>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 3e-23 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 1 MAGETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKV 60 M G TILV DD+ IR ++ L GY V + R + + LVV D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIHMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLR 119 + + ++++A ++P++++SA+ M I GA DY+ KPF+ ELI I L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RY 121 Sbjct: 121 EP 122
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 149 bits (377), Expect = 1e-44 Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 37/336 (11%) Query: 5 NYLIVGGNSFIGINLALGLLKQGQNVKVFSRHINNFPQNIISE----------VEFIKGD 54 YL+ G FIG +++ LL+ G V ++N++ + + +F K D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGID-NLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 55 LANVKDIYK--ALVSVDIIIYLAATSNVATSIEDVFGDINSSFF-FLNFMESVKNFPVKK 111 LA+ + + A + + V S+E+ +S+ FLN +E ++ ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 IVLASSGGTVYGEPEYLPIDEEHPL-KPLSPYGITKVSLENYLYFYKKKYGIDYVVCRYS 170 ++ ASS +VYG +P + + P+S Y TK + E + Y YG+ R+ Sbjct: 121 LLYASSS-SVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 171 NPYGKYQNPLKKVGAINCFLYQHLSNEKINIYGNPQEIIRDYIYIDDLVEITIQLSQLNR 230 YG + P A+ F L + I++Y ++ RD+ YIDD+ E I+L + Sbjct: 180 TVYGPWGRPDM---ALFKFTKAMLEGKSIDVYNY-GKMKRDFTYIDDIAEAIIRLQDVIP 235 Query: 231 LKSC-----------------VYNIGSGKGLSLKRIIVELEKLTERKVEFTCYKQRQENV 273 VYNIG+ + L I LE + + + +V Sbjct: 236 HADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDV 295 Query: 274 QKIILNIDRVRRECNWEPKIDFKSGIRLNKLWIEEF 309 + + + + P+ K G++ W +F Sbjct: 296 LETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 4e-23 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60 M IL+ADDD IR +L + L R Y V N + +LV+ D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIEVCRKLRDT-TNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 119 + ++ +++ ++P+L+++A++ + I GA DY+ KPF + E++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 R 120 Sbjct: 121 E 121
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 52.3 bits (125), Expect = 6e-10 Identities = 47/250 (18%), Positives = 101/250 (40%), Gaps = 25/250 (10%) Query: 52 NPQRVVVLS-SFAGNVMSLGVNLVGV------DSWSKQNPRFDSKLKNVAEVSDENVEKI 104 +P R+V L +++LG+ GV W + P DS + +V ++ N+E + Sbjct: 34 DPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVI-DVGLRTEPNLELL 92 Query: 105 AELNPDLIIGLSNIK-NVDKLKKIAPTVTYTYG----KVDYLTQHL-EIGKLLNKEKEAK 158 E+ P ++ + + + L +IAP + + + + L E+ LLN + A+ Sbjct: 93 TEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAE 152 Query: 159 TWVDDFKKRAQTAGKDIKAKIGEDATVSVVENFN--KQLYVYGENWGRGTEILYQEMKLK 216 T + ++ ++ + A ++ + + V+G N EIL + Sbjct: 153 THLAQYEDFIRSMKPRF---VKRGARPLLLTTLIDPRHMLVFGPN-SLFQEIL---DEYG 205 Query: 217 MPEKVKEKALKEGYYALSTEVLPEFAGDYLIV--SKNKDTDNSFQETESYKNIPAVKNNR 274 +P + + G A+S + L + ++ N ++ T ++ +P V+ R Sbjct: 206 IPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGR 265 Query: 275 VYEANMMEFY 284 + FY Sbjct: 266 FQRVPAVWFY 275
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 26.6 bits (58), Expect = 0.007 Identities = 7/31 (22%), Positives = 20/31 (64%) Query: 10 GDHITTFESTWRFQEGEQIFVHDDNTKRNFI 40 G +TT+ +++F+ G++ + NT++ ++ Sbjct: 403 GTEVTTYGGSYKFKNGQRYYKIGANTEKTYV 433
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.4 bits (107), Expect = 4e-07 Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 26/280 (9%) Query: 70 NLNNTIAKNKEDQAAIQRKIDETHKQI-----EQKKNEIVVLEDKVLARKDIMKKRMVSV 124 +LN ++ N D A + K+ + + E +K V + +I Sbjct: 952 HLNVSLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVP 1011 Query: 125 QNSSNTSLVVEVVVESKNFADFIQRMNAVTTILEADKEILRLQEQDLRQIEEDKKEIDEK 184 N+ + V E V A + V + + + + EQD + +E+ ++ Sbjct: 1012 SNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKE 1071 Query: 185 EASLVVDKQKLAKAQADLQDNLKKRQDNLQTVQAKYNQVASQLNLAAEEKAKVEANMKAV 244 S V + + QT + K + EEKAKVE Sbjct: 1072 AKSNVKANTQTNEV-----AQSGSETKETQTTETKETA-----TVEKEEKAKVET----- 1116 Query: 245 QETIAREQEAARIAAEERAKAEAAAKAEQEALAKAQAEFAEKQKQEKANKPAEPVANKPA 304 + QE ++ ++ K E + + +A + + K+ ++ +PA Sbjct: 1117 ----EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 305 EPVANNSSKVEPEQPKVTAGGK--EMYVHATAYTADPSEN 342 + ++N + E V G E + T T P+ N Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 3e-06 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 14/141 (9%) Query: 50 GEYHYHNKPASSGGTTSPAPSQNNNGAVEAERQAEAQRNAE------------AEKQRAA 97 G Y +N T + ++A+ + N E A + Sbjct: 976 GRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSE 1035 Query: 98 EAQRKAEEERQRAAEEQRKAEEERQRVAEEQRKAEEARKQEEAQRQADMEKGQLEGQKSG 157 + AE +Q + ++ ++ + A+ + A+EA+ +A Q + E Q G ++ Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN-EVAQS-GSETK 1093 Query: 158 ETDFKAGKNNAEGHVAGKSDA 178 ET K A K+ Sbjct: 1094 ETQTTETKETATVEKEEKAKV 1114 Score = 39.7 bits (92), Expect = 2e-05 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 10/191 (5%) Query: 78 EAERQAEAQRNAEAEKQRAAEAQRKAEEERQRAAEEQRKAEEERQRVAEEQRKAEEARKQ 137 A + AE KQ + ++ ++ + A+ + A+E + V + E A+ Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 138 ---EEAQRQADMEKGQLEGQKSGETDFKAGKNNAEGHVAGKSDAYKQAFTTAYAAAWSLE 194 +E Q E +E ++ + + + S +Q+ T A + E Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVE-TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 195 EQ-----KKAHFEKGKEQGLTQEAMDDSQITPEFKVNFAEGFQVGNKERTEKIEKEQAEL 249 K+ + Q A + S + V + GN A Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ-PVTESTTVNTGNSVVENPENTTPATT 1207 Query: 250 GEKAGKELAEK 260 E + K Sbjct: 1208 QPTVNSESSNK 1218 Score = 36.2 bits (83), Expect = 2e-04 Identities = 17/154 (11%), Positives = 50/154 (32%), Gaps = 3/154 (1%) Query: 56 NKPASSGGTTSPAPSQNNNGAVEAERQAEAQRNAEAEKQRAAEAQRKAEEERQR--AAEE 113 P +P+ + + ++N + + A+ + A+E + A + Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 114 QRKAEEERQRVAEEQRKAEEARKQEEAQRQADMEKGQLEGQKSGETDFKAGKNNAEGHVA 173 + + E Q + E + +A +E + + + + +E V Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET-VQ 1140 Query: 174 GKSDAYKQAFTTAYAAAWSLEEQKKAHFEKGKEQ 207 +++ ++ T + A E+ ++ Sbjct: 1141 PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 356 bits (916), Expect = e-126 Identities = 91/291 (31%), Positives = 150/291 (51%), Gaps = 17/291 (5%) Query: 20 VLLSCVSLIGCSNSNTQSEPPKQTNQANQIKQENTGNQSFAKLEKEYDAKLGIYALDTGT 79 + L +SL+ + P + E + ++G+ +D + Sbjct: 4 IRLCIISLLATLPLAVHASPQPL--------------EQIKLSESQLSGRVGMIEMDLAS 49 Query: 80 NQTV-AYHSDDRFAFASTSKSLAVGALLRKNSL--EALDQRITYTHEDLSNYNPITEKHV 136 +T+ A+ +D+RF ST K + GA+L + E L+++I Y +DL +Y+P++EKH+ Sbjct: 50 GRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHL 109 Query: 137 DTGMTLKELADASVRYSDSTAHNLILKQLGGPSEFEKILREMGDTVTTSERFEPELNEVH 196 GMT+ EL A++ SD++A NL+L +GGP+ LR++GD VT +R+E ELNE Sbjct: 110 ADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEAL 169 Query: 197 PGETHDTSTPEAIAKTLQSFTLGTALPIEKRELLVDWMKRNTTGDNLIRAGVPKGWEVAD 256 PG+ DT+TP ++A TL+ L + L+ WM + LIR+ +P GW +AD Sbjct: 170 PGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIAD 229 Query: 257 KTGAGSYGTRNDIAIIWPPNKKPIVLAILSNHDKEDAKYDDKLIADATKVV 307 KTGAG G R +A++ P NK ++ I ++ IA + Sbjct: 230 KTGAGERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAAL 280
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.4 bits (79), Expect = 8e-04 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 40 EFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSLII 99 + D T+ A++A LM+ + ++G +DR GRR L +S+ A I+ Sbjct: 34 DLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIM 90 Query: 100 ACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRR----GFYSSFQY 155 A P +L + R++ G++ G + Y++++ R GF S+ Sbjct: 91 ATAPFLW--------VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 156 VTLVAGQMV 164 +VAG ++ Sbjct: 142 FGMVAGPVL 150 Score = 29.0 bits (65), Expect = 0.037 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 11/82 (13%) Query: 285 VVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPMVAFLLMMVGLII--V 342 P+ G LSD+ GRRP+L+ +L A + + + T ++ +G I+ + Sbjct: 57 FACAPVLGALSDRFGRRPVLLV-----SLAGAAVDYAIMATAP---FLWVLYIGRIVAGI 108 Query: 343 TGYT-SINAIVKAELFPTEIRA 363 TG T ++ A++ + RA Sbjct: 109 TGATGAVAGAYIADITDGDERA 130
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 3e-04 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 24/131 (18%) Query: 397 EKKIDFHIEGDSALHPLPDHIKVSHLITILGNIIDNAFD-AVSERGEKN-VSFFVTDIGH 454 E ++ F + + A+ ++V ++ + +++N +++ + + T Sbjct: 237 EDRLQFENQINPAIM----DVQVPPML--VQTLVENGIKHGIAQLPQGGKILLKGTKDNG 290 Query: 455 DIVFEVIDSGAGILAEKITNIFQKGFSTKGNDRGYGLANVKEMVDLL---EGTIEIQNEK 511 + EV ++G+ L G GL NV+E + +L E I++ +EK Sbjct: 291 TVTLEVENTGSLALKNT------------KESTGTGLQNVRERLQMLYGTEAQIKL-SEK 337 Query: 512 NGGAIFTIYLP 522 G + +P Sbjct: 338 QGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.5 bits (152), Expect = 1e-13 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 5/151 (3%) Query: 3 KVAIAEDDFRVAQIQEEFLSKIK-DVKVIGKALNAKETMELLQKEEIDLLLLDNYLPDGI 61 + +A+DD + + + LS+ DV++ NA + + DL++ D +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS---NAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GTDLLPKIHADFPNVDVIMVTAANENHMLEKAIRNGVSNYLIKPVTLEKFVRTIEDYKRK 121 DLLP+I P++ V++++A N KA G +YL KP L + + I + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 KQLLHSNNEVNQEIIDNFFGTS-QIQDMKNL 151 + S E + + G S +Q++ + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRV 152
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.003 Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 26 RILNEDEYIEELCKKTQEELTEYIEAKIKPHKLEELSDLLELINALAEHEG 76 +L+ + E + ++ I+A I P LEE+ D+ L L Sbjct: 665 ELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFD 715
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 2e-11 Identities = 29/199 (14%), Positives = 62/199 (31%), Gaps = 21/199 (10%) Query: 1 MEKVDRRIIKSKEAIKNAFIELMAEKGFDKITVKDICSGADVGNRTFYLHYLDKFDLLDK 60 K + ++++ I + + L +++G ++ +I A V Y H+ DK DL + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 LVIERIEALKTLCAPLHD-------LSFREACIAWFENM--EQHYFF-----FSTMLAGK 106 + + L RE I E+ E+ F Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 107 GASAFRKHFFDYIIEQIKDDVD-IKEGINKG-----FSEDMIITFFGSAIVGVVETYFM- 159 + ++ + +E +K I I G++E + Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 160 KGLPDPPEIVAEQLGMLLD 178 D + + + +LL+ Sbjct: 182 PQSFDLKKEARDYVAILLE 200
>cloacin#Cloacin signature. Length = 551 Score = 25.4 bits (55), Expect = 0.008 Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 2 GYGGSCGGYGGSCGGGCGFGGG 23 G G GG G+ GGG G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGN 80
>PF05272#Virulence-associated E family protein Length = 892 Score = 26.2 bits (57), Expect = 0.030 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 2/44 (4%) Query: 60 FDGWSKFEK-RLPRDTK-IMKECLLDYNEEDRKDPAWKSEFLFN 101 F W E RL + ++K E R PA F+ Sbjct: 429 FGEWLDDEVARLRLRGRWLLKPRRAALIEALRSAPALAGCVAFD 472
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 68.7 bits (168), Expect = 8e-15 Identities = 70/390 (17%), Positives = 139/390 (35%), Gaps = 23/390 (5%) Query: 1 MKKVNPLLILTLAIGVFGIITTEMGIVGVLPQITEKFGISTTQA---GFLVSIFALVVAI 57 MK PL+++ + + + I+ VLP + S G L++++AL+ Sbjct: 1 MKPNRPLIVILSTVALDAVGIGL--IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFA 58 Query: 58 SGPFLILLVSSINRKIILLTAIFAFVISNIIYAYTTQFEIMLIFRILPAALHPLFFSIAL 117 P L L R+ +LL ++ + I A ++ I RI+ A + ++A Sbjct: 59 CAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV-AGITGATGAVAG 117 Query: 118 VTAAKLVPPEKSGQAVTKVFMGITVGFALGVPLTSYLADQFSLEIAFLFGALVNTLAFIG 177 A + ++ + + G G P+ L FS F A +N L F+ Sbjct: 118 AYIADITDGDERARHFGFMSACFGFGMVAG-PVLGGLMGGFSPHAPFFAAAALNGLNFLT 176 Query: 178 ILILLPSMPVKEKMSFGKQIRILGKPGLWLNILTVTFLFAAMFSVYSYFAEYLAKVTSM- 236 LLP E+ ++ W +TV A+F + + A + + Sbjct: 177 GCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 237 -------NGSLISIMLFIFGIVMILGN-HLFGSLLQKSIVNTVILFPILYS-IVYILVYY 287 + + I I L FGI+ L + G + + ++ ++ YIL+ + Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF 296 Query: 288 LGSYLVPMIFIVFIWGIVHAGGLIVGQTWL-ISEAKEAPEFGNSLFVSFSNLGITLGTTI 346 M F + + G+ Q L +E + ++L +G + Sbjct: 297 ATRG--WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLL 354 Query: 347 GGWFISNLGIHQLIWSGFIFTLLSFLLIII 376 + W+G+ + + L ++ Sbjct: 355 FTAIYA---ASITTWNGWAWIAGAALYLLC 381
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.2 bits (96), Expect = 6e-07 Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 29/179 (16%) Query: 8 KKIIANSLKYLMETESFHKISVSDIMLHCQMRRQTFYYHFKDKFELLSWIYKEETK---E 64 + I+ +L+ L + S+ +I + R Y+HFKDK +L S I++ E Sbjct: 14 QHILDVALR-LFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 65 NIIDFLD------YETWENIFDLLFDYFYEN-------------QKFYRNAFKVIE-QNS 104 +++ I + + +F V + Q + Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 105 FNHYLFEHTKNLYMKIIDELSMSCGFSLSDETKNTIASFYSHGFVGTIKDWIESKCEVD 163 ++ + I+ +D A G +++W+ + D Sbjct: 133 LCLESYDRIEQTLKHCIEA-----KMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 26.4 bits (58), Expect = 0.048 Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 69 GESAKGGYYLATVQSAYLNDSNDSIVVNVSVKNVRGQMIGLSELKYNLKDEKDGKAYEGK 128 G+ K YY T AY + SI V V + Q Y G +Y Sbjct: 78 GDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPT--YKHDTSDYGFSYG-- 133 Query: 129 VIDQNPSDIQVNPNETVELKIAFEVPGTTD 158 + +Q NP E V L ++E Sbjct: 134 ------AGLQFNPMENVALDFSYEQSRIRS 157
>PF06580#Sensor histidine kinase Length = 349 Score = 26.8 bits (59), Expect = 0.040 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%) Query: 53 NIVQHAY--KEDVGEITIVFGLYEDRLEIMVADNG 85 N ++H G+I + + + V + G Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 1e-19 Identities = 35/147 (23%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Query: 2 SILIVDDNPVNIFVIEKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDIM 61 +IL+ DD+ V+ + L +AGY D+ ++A L+ +I + DL++ D++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWI-------AAGDGDLVVTDVV 56 Query: 62 MPEIDGLEVCRRLQNEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVELLAR 121 MP+ + ++ R++ D+P++ ++A +A + GA DY+ KP + EL+ Sbjct: 57 MPDENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 122 MRVALRLKSELNWHKEQEENLRNELDL 148 + AL + E++ ++ + L Sbjct: 115 IGRALAEPKRR--PSKLEDDSQDGMPL 139
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.5 bits (63), Expect = 0.041 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 184 SNYYSTDNRFAYFNPSLLQN-IIFAQHNLVTDQSFNEFHIILCRNVLIYFTSKLQNQVQQ 242 + YY D + Y N +LQ F N V S N F + RN L + + Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNAV---SLNTFKVNATRNPLNTHARVMMGGELK 1257 Query: 243 LFYESLGHNGFLCLGN 258 L E + GF+ L N Sbjct: 1258 LAKEVFLNLGFVYLHN 1273
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 2e-15 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 777 TILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDGY 836 TIL+ DDD L AL + ++ N + + DL++ D++MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAF 63 Query: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNL 883 + + I+ ++P++ ++A+ K GA DY+ KP +L Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDL 108
>PF07132#Harpin protein (HrpN) Length = 356 Score = 28.5 bits (63), Expect = 0.015 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Query: 51 SGEKVNSETAHKADIFSATGLVAGGVAGGLGGLLTGLGILAVSGMGPIVAAGPIAAAIGG 110 G + ++ +DI + + + GGLGG L GLG G ++ G G Sbjct: 40 FGGQRSNIAEQLSDIMTTMMFMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGG------LG 93 Query: 111 AGIGGGAGSLIGAFIGLGI 129 G+G GS +G+ +G G+ Sbjct: 94 GGLGSSLGSGLGSALGGGL 112
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 40.2 bits (94), Expect = 1e-05 Identities = 62/345 (17%), Positives = 112/345 (32%), Gaps = 23/345 (6%) Query: 25 IGITSVSPLLETIRQDLNISNFSVS---FLTAIPVFCMGTFALLTGKVIKKYGAERAIMT 81 +GI + P+L + +DL SN + L A+ A + G + ++G R + Sbjct: 19 VGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFG--RRPVL 76 Query: 82 CLILIGFAT--CMRAFTSSISTLFASSLFIGIGIALAGPLLSGFIKEKFPTK-----IGL 134 + L G A + A + L+ + GI A G + +I + G Sbjct: 77 LVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADITDGDERARHFGF 135 Query: 135 MIGIYSVGMGTGASLSAGLTIPLQHVLKDDWNMALAFWGVLTIIAIIFWYPVMKRKKNTS 194 M + GM G L GL + A A G+ + K ++ Sbjct: 136 MSACFGFGMVAGPVL-GGLMGGFSPHAP--FFAAAALNGLNFLTGCFLLPESHKGERRPL 192 Query: 195 TQNKKNNSLPLRNKK-----AWLFTIFFGLQSGIFYSITTWLAPANQNMGVSSEQAGTLI 249 + N R + A L +FF +Q W+ + G + Sbjct: 193 RREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISL 252 Query: 250 TVFTVVQMIC-SFLIPTLADIYKNRALWLLGSICFVLVGLSLMIYPLTTPWIPSILLGIG 308 F ++ + + + +A R +LG I G L+ + I++ + Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADG-TGYILLAFATRGWMAFPIMVLLA 311 Query: 309 LGGVFPLALMLPLYETKTSEDASAWTAMMQSGGYIMGGFIPVLAG 353 GG+ AL L E + + + P+L Sbjct: 312 SGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356 Score = 32.9 bits (75), Expect = 0.002 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 9/150 (6%) Query: 246 GTLITVFTVVQMICSFLIPTLADIYKNRALWLLGSICFVLVGLSLMIYP-LTTPWIPSIL 304 G L+ ++ ++Q C+ ++ L+D + R + L+ + + P L +I I+ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 305 LGIGLGGVFPLALMLPLYETKTSEDASAWTAMMQSGGYIMGGFI--PVLAGIARDYFNSY 362 GI G +A + + ++ + M G + PVL G+ + S Sbjct: 106 AGIT-GATGAVAGAY-IADITDGDERARHFGFM--SACFGFGMVAGPVLGGLMGGF--SP 159 Query: 363 TQVFIIMALLSFILFLLTLVMNKRKRNAED 392 F A L+ + FL + E Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESHKGER 189
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 6e-04 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 15/123 (12%) Query: 279 RFSEATSIHVRFTIQSPPHISS-LVKEHCLYVISECLTNIAKH---SQATDVNLKVEYID 334 +F + ++F Q P I V + + E N KH + ++ Sbjct: 235 QFED----RLQFENQINPAIMDVQVPPMLVQTLVE---NGIKHGIAQLPQGGKILLKGTK 287 Query: 335 DLEKLTIEVEDNGIGFDTRYIGKNPGHYGLIGLNERVRLIKGEIHIL--SEKMKGTKVYI 392 D +T+EVE+ G K GL + ER++++ G + SEK + Sbjct: 288 DNGTVTLEVENTGSLALKN--TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345 Query: 393 QVP 395 +P Sbjct: 346 LIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 2e-19 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 5 VLIVDDHFVVREGLKLIIETSDSFQIIGEAANGEEALSFIEKKKPDVILMDLNMPKMSGL 64 +L+ DD +R L + + + + +N +I D+++ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG-YDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 ETIEALNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAI 120 + + + K + P+++++ N +K E GA YL K D L + A+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.0 bits (93), Expect = 4e-05 Identities = 32/256 (12%), Positives = 79/256 (30%), Gaps = 14/256 (5%) Query: 187 MKKIEEKMKEWQGKIGTYEKQVEQLKESEEKLASVRAEKESAERRKQDYEILVALEPLVI 246 +++ ++ + + ++ +++E E + A + E A + Sbjct: 91 TEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEK 150 Query: 247 EKSTHEKVLENENGQFPVNGMARYEAVKAKIEPLQVQVDSLQKKIETV---------QSE 297 K + + +N A +E + +++ Q ++E Sbjct: 151 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 210 Query: 298 IDSTEIDEAFLQKESYVEELRMQHMSYENARQEMRD----MTGSIANIKEEIAELQQQIG 353 ++ + +L N + A ++ AEL++ + Sbjct: 211 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 270 Query: 354 ATFEQETVLSFDISLATKELIMQTVQKARELESQKAQLDERFKTAQEQLEEQEENIRQIS 413 T S I E + +LE Q L+ ++ + L+ E +Q+ Sbjct: 271 GAMNFSTADSAKIKTLEAE-KAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE 329 Query: 414 QQMLADEEKNTLVEKE 429 + EE+N + E Sbjct: 330 AEHQKLEEQNKISEAS 345 Score = 33.1 bits (75), Expect = 0.006 Identities = 39/293 (13%), Positives = 96/293 (32%), Gaps = 17/293 (5%) Query: 153 SDALLQLDKKLEKEMNQRFKPSGRNPEINVSLQEMKKIEEKMKEWQGKIGTYEKQVEQLK 212 S + L+ + ++ + ++ + + + ++E+ Sbjct: 140 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 199 Query: 213 ESEEKLASVRAEKESAERRKQDYEILVALEPLVIEKSTHEKVLENENGQFPVNGMARYEA 272 E ++ + K + L A + + + + A A Sbjct: 200 EGAMNFSTADSAKIKTLEA--EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 273 VKAKIEPLQVQVDSLQKKIETVQSEID--STEIDEAFLQKESYVEELRMQHMSYENARQE 330 ++A+ L+ ++ ++I E +K + ++ + + ++ R++ Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 331 MRDMTGSIANIKEEIAELQQQIGATFEQETVLSFDI--SLATKELIMQTVQKARELESQ- 387 + + ++ E +L++Q + L D+ S K+ + QK E Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377 Query: 388 -------KAQLD---ERFKTAQEQLEEQEENIRQISQQMLADEEKNTLVEKEK 430 + LD E K ++ LEE + + + EE L EKEK Sbjct: 378 EASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEK 430
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 30.5 bits (68), Expect = 0.010 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 7/108 (6%) Query: 20 IKTATKGLASNGKPFLTVILQDPSGDIEAKLWDV-------SPEVEKQYVAETIVKVAGD 72 IK+ + + F +D G+I+A WD + +Y +V Sbjct: 779 IKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHKYNKTGEYEVKLT 838 Query: 73 ILNYKGRIQLRVKQIRVANENEVTDISDFVEKAPIKKEDMVEKITQYI 120 + + G I K+I+V + V I++ +K + + K + Sbjct: 839 VTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLV 886
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.7 bits (183), Expect = 7e-19 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 5/160 (3%) Query: 6 QTSQNIVEASFKLMAEHGIEKMSLSMIAKEVGISKPAIYYHFSSKEALVDFLFEEIFS-- 63 +T Q+I++ + +L ++ G+ SL IAK G+++ AIY+HF K L ++E S Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 64 GYHFASYFDKEQYTKENFAEKLIADGLHMLSEYEGQEGILRVINEFIVTASRNEKYQKRL 123 G Y K + +++ L E + ++ +I Q+ Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 124 FEIQEDFLNGFHDLLKKGVELDVVSQQATEENAHTLALVI 163 + + + LK +E ++ + A+++ Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKML---PADLMTRRAAIIM 167
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 26.9 bits (59), Expect = 0.003 Identities = 8/33 (24%), Positives = 15/33 (45%) Query: 16 YKIPGMIEAFQADKGWLALISLVWLLWFGYFIP 48 ++ I+ A WL ++ + W+LW P Sbjct: 449 WQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRP 481
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.1 bits (65), Expect = 0.041 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 24/76 (31%) Query: 15 KITDFIPLLIFMFSLNGKFPFWYLIPAGFGLLTIFSAFEKWYYTTYWVENNVLHVKQGLF 74 KI F+P++ +F L P+G L Y++ +N++ + Q Sbjct: 493 KIMTFMPVIFTVFFLW--------FPSGLVL--------------YYIVSNLVTIIQQQL 530 Query: 75 VKKESYLNKERVQTIN 90 + + L K + + Sbjct: 531 IYRG--LEKRGLHSRE 544
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.3 bits (138), Expect = 1e-12 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 6 TRQKILAAASQIVQFKGVAKLTLEAVAKEAGVSKGGLLYHFSNKEALIEGMILKGTEEYH 65 TRQ IL A ++ +GV+ +L +AK AGV++G + +HF +K L + E Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW----ELSE 67 Query: 66 GAIHNRVTEDTEKKGRWIRSFVEERL 91 I E K S + E L Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREIL 93
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 39.6 bits (92), Expect = 7e-05 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Query: 2038 LAPPGPEKPDPEKPEKPDPEKPEKPDPEKPGTTDPEKPGTTDPEKPETTDPEKPGTTDPE 2097 L PP +P PE +P+PE P+P E P + KP+ KP E Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPP------KEAPVVIEKPKPKPKPKPKPVKKVQE 108 Query: 2098 KPEKELPKTGQKMPVEPYM 2116 +P++++ + P P+ Sbjct: 109 QPKRDVKPVESR-PASPFE 126
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.013 Identities = 5/33 (15%), Positives = 11/33 (33%) Query: 9 LHQLQQALQIQQQTILNLEEQVRLLQEELNELK 41 L + + I E R+ + L++ Sbjct: 209 LDKKRAERLTVLARINRYENLSRVEKSRLDDFS 241
>PF06580#Sensor histidine kinase Length = 349 Score = 26.4 bits (58), Expect = 0.017 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%) Query: 44 EKMDMMISLVTTYMRIE-SGSTEELEALQEEIIHAQAY--IQKRKFEE 88 K M++ ++ MR S +L +E+ +Y + +FE+ Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFED 238
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.4 bits (86), Expect = 2e-04 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 405 RTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDLGSQERLKTLQRELSDLKEVASSMRAK 464 S+ +LD QLE E L ++ + R ++L+R+L +E + A+ Sbjct: 308 NANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR-QSLRRDLDASREAKKQLEAE 366 Query: 465 WEKEKEDIHKVRDLREHLERLRRELEEA-EGNYDLNKAAELRHGKIPAIEKELKEAEE 521 +K +E +K+ + + LRR+L+ + E + KA E + K+ A+EK KE EE Sbjct: 367 HQKLEEQ-NKISEAS--RQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEE 421
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.6 bits (116), Expect = 1e-08 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 44/233 (18%) Query: 12 RVLIIGALTFVGYHLVNKMIAEEVEVYGLD-FDEFDSMTKINEEKLLLIGRNALFTYYS- 69 + L+ GA F+G+H+ +++ +V G+D +++ + + + +L L+ + F ++ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDV-SLKQARLELLAQ-PGFQFHKI 59 Query: 70 -IRDEDGWRSV-EEESFDTVYFCLYEPNQ--QSGFR---------NERVILQYLKRIVRM 116 + D +G + F+ V+ + R + + +L I+ Sbjct: 60 DLADREGMTDLFASGHFERVF------ISPHRLAVRYSLENPHAYADSNLTGFLN-ILEG 112 Query: 117 CEKNKVK-LNLISSIEI-GS------TEESENKHLFSKVEEGLKKGEL---QYSA-YRVP 164 C NK++ L SS + G + + H S K EL YS Y +P Sbjct: 113 CRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLP 172 Query: 165 -------TLYGPWQPSFMMYHQLILSELHEKECRCIN-GEKGSDLLYVEDVCE 209 T+YGPW M + + L K N G+ D Y++D+ E Sbjct: 173 ATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAE 225
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 195 bits (498), Expect = 2e-62 Identities = 78/335 (23%), Positives = 142/335 (42%), Gaps = 26/335 (7%) Query: 1 MNILVTGGAGFIGSNFIHYMLKNYETYKIINYDALT--YSGNLNNVK-SIQENPNYSFVK 57 M LVTG AGFIG + +L+ ++ D L Y +L + + P + F K Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQ--VVGIDNLNDYYDVSLKQARLELLAQPGFQFHK 58 Query: 58 GKIQNGELLEHVVKECDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYSH 117 + + E + + + + V S+ENP + D+N+ G + +LE + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 118 IKLVQVSTDEVYGSLGKTGKFTEETPLA-PNSPYSSSKASSDMIALSYYETYQLPVIITR 176 L+ S+ VYG L + F+ + + P S Y+++K +++++A +Y Y LP R Sbjct: 119 QHLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 177 CSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDTVLHKGCV- 235 YGP+ P+ + LEGK + +Y G RD+ ++ D AI + Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 236 -----------------GEVYNIGGNNEKTNIDVVEQIIKILGKTKKDIEFVTDRLGHDR 278 VYNIG ++ +D ++ + LG + + + G Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI-EAKKNMLPLQPGDVL 296 Query: 279 RYAIDAQKMKNEFEWEPKYTFEQGLKETVEWYKNN 313 + D + + + P+ T + G+K V WY++ Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 45.2 bits (107), Expect = 1e-07 Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 44/237 (18%) Query: 4 RIIITGANGQLGKQLQEELNSEEYDIYPFDK--------------KLL----------DV 39 + ++TGA G +G + + L + + D +LL D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 40 TNISRIKQVVQEIKPHTIVHCAAYTKVDGAEKEQDLAYL-INAIGARNVAVASQLVGAK- 97 + + + + V + E AY N G N+ + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYS-LENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 98 LVYVSTDYVFPGDKPDGYHEFHNPA-PINIYGASKFAGEQFVKELHNKYFIVRTSW---- 152 L+Y S+ V+ ++ + + P+++Y A+K A E + Y + T Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 153 LYGKYGN------NFVKTMLRLGKERENISVVAD--QVGSPTYVADLITVINKLIHT 201 +YG +G F K ML E ++I V TY+ D+ I +L Sbjct: 181 VYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 61.6 bits (149), Expect = 2e-13 Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 19/259 (7%) Query: 4 LQGKTFVVMGVANQRSIAWGIARSLHNAGAKLI-FTYAGERLERNVRELAETLEGQESLV 62 ++GK + G A + I +AR+L + GA + Y E+LE+ V + E + + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVS--SLKAEARHAEA 61 Query: 63 LPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDDLKGEFVDTSRDGFLLAQNISA 122 P DV + + I++E+G I + + G S + + ++++ Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNS 117 Query: 123 FSLTAVAREAKKVMT--EGGNILTLTYLGGERVVKNYNVMGVAKASLEASVKYLANDLGQ 180 + +R K M G+I+T+ + +KA+ K L +L + Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 181 HGIRVNAISAGPIRT-----LSAKGVGDFNSILKEIEE---RAPLRRATTPEEVGDTAVF 232 + IR N +S G T L A G I +E PL++ P ++ D +F Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 233 LFSDLARGVTGENIHVDSG 251 L S A +T N+ VD G Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.026 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 24/198 (12%) Query: 52 SGIVSKLLGEPGDTVEVGATIAILDANGAAAAVSTPAPPAEQPKQETTEAPKAAAPSAEQ 111 + IV +++ + G++V G + L A GA A Q + E + + + Sbjct: 104 NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE--QTRYQILSRSIE 161 Query: 112 NKALQGLPNTNRPIASPAARKMARELGIDLNEVRSTDPLGRVRPHDVQAHAAAPKEAPAA 171 L L + P + + L + E ST + KE Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST-----------WQNQKYQKELNLD 210 Query: 172 PKQSP-----APVAKTEFEKPVERVKMSRRRQTIAK------RLVEVQQTSAMLTTFNEV 220 K++ A + + E VE+ ++ + K ++E + V Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 221 DMSAIMELRKERKDAFEK 238 S + ++ E A E+ Sbjct: 271 YKSQLEQIESEILSAKEE 288
>BACSURFANTGN#Yersinia/Haemophilus virulence surface antigen signature. Length = 322 Score = 28.1 bits (62), Expect = 0.045 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 4/75 (5%) Query: 26 ITETQDKAIKTIDSLTQSGDWNQYDDFRAISAFTMKFLDTAKYDLKEVIDGIHTEIKEYH 85 I Q LT G NQ R+ F+M + L + + + Y Sbjct: 55 IKHNQSGRSMLDRKLTSDGKANQ----RSSFTFSMIMYRMIHFVLSTRVPAVRESVANYG 110 Query: 86 TKILFSLAKTAREIH 100 I F A+T Sbjct: 111 GNINFKFAQTKGAFL 125
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 7e-06 Identities = 19/123 (15%), Positives = 50/123 (40%) Query: 167 DKQIQAFEKSLVDETAKQVSEAEKKKKLEESKKQEEAKKLEESKKQEEAKKLEESKKQEE 226 + A E + Q +E + + + E K+ +K+E+AK E ++ Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVP 1123 Query: 227 AKKLEESKKQEEAKKLEESKKQEEAKKLEESKKQEEAKKLEESKKQEEAKKLEESKKQEE 286 + S KQE+++ ++ + + K+ +++ + ++ AK+ + +Q Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183 Query: 287 QKE 289 + Sbjct: 1184 TES 1186 Score = 37.7 bits (87), Expect = 4e-05 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 165 EIDKQIQAFEKSLVDET-AKQVSEAEKKKKLEESKKQEEAKKL-EESKKQEEAKKLEESK 222 E+ + +++ ET E E+K K+E K QE K + S KQE+++ ++ Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 223 KQEEAKKLEESKKQEEAKKLEESKKQEEAKKLEESKKQEEAKKLEESKKQEEAKKLEESK 282 + + K+ +++ + ++ AK+ + +Q + + + E + Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 283 KQEEQKE 289 Q Sbjct: 1204 PATTQPT 1210
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.4 bits (131), Expect = 3e-10 Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 9/258 (3%) Query: 56 WSGSIVDRLNKRSIMLITDIIRAALIGCIPLFDSIWVIYIFIFLTRIATSFFDPASFTYK 115 G++ DR +R ++L++ A + +WV+YI + I + + Y Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYI 120 Query: 116 TMLIRAEERAQFNAWNNFCTSGAFIIGPALAGILLTTYSASFVIYCNSLSFLLSTILIYF 175 + +ERA+ + + C + GP L G L+ +S + + L+ + F Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 176 LPNITLQTKQNEEVSNTFLQTLRSDWKQVFSFARTETYIILIFVLFQATMLVSMALDSQE 235 L + + ++ L+ + F +AR T + + +F LV + Sbjct: 180 LLPESHKGERRP------LRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALW 233 Query: 236 VVFTNQVLFLSDIDYSMLVSITGAAY-VFGSFLVSLFAKRLPIQHCIGLGMIFTAIGYVI 294 V+F + ++ G + + + + A RL + + LGMI GY++ Sbjct: 234 VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYIL 293 Query: 295 FAFSNSFIVAASGFILLG 312 AF+ +A +LL Sbjct: 294 LAFATRGWMAFPIMVLLA 311
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.9 bits (114), Expect = 4e-08 Identities = 52/292 (17%), Positives = 110/292 (37%), Gaps = 17/292 (5%) Query: 59 LPQLLLSPFIGGIVDRFSKKKIMIFTDILRGIIVLTYLLAFYK-IEIIFVSNICLAVLSC 117 L Q +P +G + DRF ++ +++ + L G V ++A + ++++ I +A ++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVS--LAGAAVDYAIMATAPFLWVLYIGRI-VAGITG 110 Query: 118 LFEPAKQSTLKNIVHQKHLVTANSLSSTINGFMSIMGASLGGLIAQ---SLSIEIAFFIN 174 + + +I S GF + G LGGL+ A +N Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALN 170 Query: 175 SLSYFISAYIIYKIKIPSRDTFSTKKAFFTDIKDGYTYILQRKIILSLILVGISWGIIGG 234 L++ +++ + R + + + + ++ +L+ V ++G Sbjct: 171 GLNFLTGCFLLPESHKGERRPLRREA---LNPLASFRWARGMTVVAALMAVFFIMQLVGQ 227 Query: 235 AYQLLLTIYAERIFH---SNIGILYTVQGAGLMIGSLLVNLYISKN-EDKMKRAFGWAYL 290 L I+ E FH + IGI G + ++ ++ ++ G Sbjct: 228 VPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIAD 287 Query: 291 LQGIFFLGFVLSDQLIIGIITLLCMRIAGGIIVPLDTTLLQMYTEENMIGKV 342 G L F + I+ LL +GGI +P +L +E G++ Sbjct: 288 GTGYILLAFATRGWMAFPIMVLL---ASGGIGMPALQAMLSRQVDEERQGQL 336
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 56.8 bits (137), Expect = 6e-12 Identities = 23/71 (32%), Positives = 40/71 (56%) Query: 475 DTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELV 534 D ++ ++ + + G T TI+++L L + V LD EP+ I +N L+A GE+V Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 535 NVDGFFGVKVT 545 V +GV++T Sbjct: 113 VVADKYGVRIT 123
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 101 bits (253), Expect = 2e-25 Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 14/249 (5%) Query: 4 SDYNTPLSGMLAAQMGLQTTKQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQT 63 S N +SG+ AAQ L T N+S+ + GY RQ ++ G +G GV Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAG--GWVGNGVYV 59 Query: 64 LGVDRITDEVKTKQFNDQLSQFSYYAYMNSTLSRVESMVGTTGKNSLSSLMDGFFNAFRE 123 GV R D T Q +Q S +S++++M+ T+ SL++ M FF + + Sbjct: 60 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTS-SLATQMQDFFTSLQT 118 Query: 124 VAKNPEQPNYYDTLVSETGKFTSQINRLAKNLDTAEAQTTEDIEAHVNEFNRLGASLAEA 183 + N E P L+ ++ +Q + L + Q I A V++ N +A Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 184 NKKI----GQAGTQVPNQLLDERDRIVTEMSKYANIEVS---YESMNPNIASVRMNGVLT 236 N +I G PN LLD+RD++V+E+++ +EVS + N +A NG Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMA----NGYSL 234 Query: 237 VNGQDTYPL 245 V G L Sbjct: 235 VQGSTARQL 243 Score = 58.8 bits (142), Expect = 2e-11 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 358 QFIVGVASDKSAVNAY-QNIHKDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKA 416 +V +K+A +++ + ++ SI GVN++EE NL FQ+Y++AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 417 ITTMNEVFDSLFSI 430 + T N +FD+L +I Sbjct: 532 LQTANAIFDALINI 545
>FLAGELLIN#Flagellin signature. Length = 507 Score = 38.1 bits (88), Expect = 3e-05 Identities = 28/127 (22%), Positives = 60/127 (47%) Query: 1 MRVSTFQNANWAKNQMMDLNVQQQYHRNQVTSGKKNLFMSEDPLAASKSFAIQHSLANIE 60 ++T + +N + +++SG + +D + + ++ + Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QMQKDLADSKNVLTQTENTLQGVFKSLTRADQLTLQALNGTNSEKELKAIGAEIDQILKQ 120 Q ++ D ++ TE L + +L R +L++QA NGTNS+ +LK+I EI Q L++ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 VVYLANT 127 + ++N Sbjct: 122 IDRVSNQ 128
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.5 bits (66), Expect = 0.004 Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 20 NTVSSNIANANTPGYKAQDVTFAEKMN 46 NT S+NI++ N GY Q A+ + Sbjct: 19 NTASNNISSYNVAGYTRQTTIMAQANS 45
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.9 bits (80), Expect = 5e-05 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%) Query: 5 INASGSGLTTARKWMEVTSNNIVNANTTGAPGAEPYHRRSVVLESNNSFASMLDGAPTNG 64 IN + SGL A+ + SNNI + N G Y R++ ++ NS G NG Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAG------YTRQTTIMAQANSTLGA-GGWVGNG 56 Query: 65 VKIKSIETDRNENLV 79 V + ++ + + + Sbjct: 57 VYVSGVQREYDAFIT 71 Score = 28.4 bits (63), Expect = 0.009 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 97 NIDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEI 134 +++ E N+ Q+ Y AN VL + D + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 35.4 bits (81), Expect = 5e-06 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 38 LEDMNQTQNNAQTAVYDLLTKGVG-ETHDVLIQQKKAESQMKTAALVRDNLIENYKSLIN 96 L+ ++ TQ A+T G +DV+ +KA M+ VR+ L+ Y+ +++ Sbjct: 41 LDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMS 100 Query: 97 MQI 99 MQ+ Sbjct: 101 MQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 159 bits (404), Expect = 9e-45 Identities = 97/540 (17%), Positives = 215/540 (39%), Gaps = 46/540 (8%) Query: 17 LVIGAALLAIATGALLYFTLPDKYVVVYQNLNDTDKQEITAELSKLGVDYQLAADG-SIR 75 +V G+A +AI +L+ PD Y ++ NL+D D I A+L+++ + Y+ A +I Sbjct: 28 IVAGSAAVAIVVAMVLWAKTPD-YRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIE 86 Query: 76 VQKNDAPWVRKEMNGMGLPFNSKSGEEILLESSLGSSEQDKKMKQIVGTKKQLEQDIVRN 135 V + +R + GLP G E+L + G S+ +++ + +L + I Sbjct: 87 VPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTI-ET 145 Query: 136 FATIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQVAGIQQMISAAVPGV 195 +++A V + +P+ ++F E+ +A++TV ++ G+ L Q++ + ++S+AV G+ Sbjct: 146 LGPVKSARVHLAMPKP-SLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGL 204 Query: 196 KAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQIEGKLKQDIDATLMTMFKSNE 255 V+++D ++++ + + ++ + +E ++++ I+A L + + Sbjct: 205 PPGNVTLVDQSGHLLTQSNTSGRDLNDAQ----LKFANDVESRIQRRIEAILSPIVGNGN 260 Query: 256 YKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQEESSTA-QEGADTKQGAGITANGEVP 313 +++ + E Y + ++ + + + Q GA G + + Sbjct: 261 VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPA 320 Query: 314 NYGT----------NNNQNGKVVYDNKNGNKI----------ENYEIDKTVETIKKHP-E 352 N QN + N N NYE+D+T+ K + + Sbjct: 321 PPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGD 380 Query: 353 LTKTNVVVWVDNDTLVKRKI------DMTTFKEAIGTAAGLQADPNGNFTNGQVNVVTVQ 406 + + +V V V+ TL K M ++ A G +NVV Sbjct: 381 IERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDK-----RGDTLNVVNSP 435 Query: 407 FDQPKVEKEKEPEKSGMNWWLFGGITAGLLALIGLVWFFLARRKKKREEEEYEEYLAEEE 466 F + P ++ L ++ + W + + + EE A +E Sbjct: 436 FSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQE 495 Query: 467 VAASSESIFEIPEEKI----VPEPKPEPVEPSEPTLDDQVQEATKEHVEGTAKVIKKWLN 522 A + E E ++ + + + +++E + A VI++W++ Sbjct: 496 QAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMS 555
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 205 bits (522), Expect = 7e-66 Identities = 116/336 (34%), Positives = 196/336 (58%), Gaps = 6/336 (1%) Query: 2 LDEISSKEKAAILIRTLNEEVAAKVIEYMTAEEKEVLLREIAKFRVYKPETLENVLGEFL 61 + ++ K+KAAIL+ ++ E+++KV +Y++ EE E L EIAK E +NVL EF Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71 Query: 62 YELNVKELNLVTPDKEYIRRIF-KNMPEEDLEKLLEDLWYN-KDNPFEFLNSLTDLEPLL 119 EL + + + +Y R + K++ + ++ +L + PFEF+ D +L Sbjct: 72 -ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRA-DPANIL 129 Query: 120 TVLNDESPQTIAIIASYIKPQLASQLIERLPDHKRVETVMGIAKLEQVDGELINQIGELL 179 + E PQTIA+I SY+ PQ AS ++ LP + IA +++ E++ ++ +L Sbjct: 130 NFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVL 189 Query: 180 KAKLNNMAFSAINKTDGLKTIVNILNNVSRGVEKTVFQKLDEVDYALSEKIKENMFVFED 239 + KL +++ G+ +V I+N R EK + + L+E D L+E+IK+ MFVFED Sbjct: 190 EKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFED 249 Query: 240 LLGLEDLALRRVLEEITDNGVIAKALKIAKEEIKEKLFTCMSSNRREMILEELDGLGPLK 299 ++ L+D +++RVL EI D +AKALK ++EK+F MS M+ E+++ LGP + Sbjct: 250 IVLLDDRSIQRVLREI-DGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTR 308 Query: 300 MTDAEKAQQTITGTVKKLEKEGRIIVQRG-EDDVLI 334 D E++QQ I ++KLE++G I++ RG E+DVL+ Sbjct: 309 RKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVLV 344
>FLAGELLIN#Flagellin signature. Length = 507 Score = 84.3 bits (208), Expect = 5e-22 Identities = 40/142 (28%), Positives = 64/142 (45%) Query: 3 IGTNVLSMNASQSLYENEKRMKMATDKKLNTASDTPANVAIVTRMHARASGIQVAIRKIE 62 + + A + ++ +A + + + I A + I+ Sbjct: 366 GESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASID 425 Query: 63 EALQNISLYRADLGAMMKRLQFNIENLNNQSLALTGASSRIEDADMAQEMSDFFKFKLLT 122 AL + R+ LGA+ R I NL N L A SRIEDAD A E+S+ K ++L Sbjct: 426 SALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQ 485 Query: 123 EVALSMVSQANQIPQMVSKLLQ 144 + S+++QANQ+PQ V LL+ Sbjct: 486 QAGTSVLAQANQVPQNVLSLLR 507 Score = 40.0 bits (93), Expect = 1e-06 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 1 MRIGTNVLSMNASQSLYENEKRM-----KMATDKKLNTASDTPANVAIVTRMHARASGIQ 55 I TN LS+ +L +++ + ++++ ++N+A D A AI R + G+ Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 56 VAIRKIEEALQNISLYRADLGAMMKRLQ 83 A R + + L + LQ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQ 89
>FLAGELLIN#Flagellin signature. Length = 507 Score = 128 bits (322), Expect = 6e-36 Identities = 78/271 (28%), Positives = 122/271 (45%), Gaps = 3/271 (1%) Query: 1 MRINTNINSMRTQEYMRQNQDKMNTSMNRLSSGKSINSAADDAAGLAIATRMRAKEGGLN 60 INTN S+ TQ + ++Q +++++ RLSSG INSA DDAAG AIA R + GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 VGARNTQDAMSALRTGDAALGSVSNILLRMRDLATQASSGTNNDKDIASMDKEYQALAQE 120 +RN D +S +T + AL ++N L R+R+L+ QA++GTN+D D+ S+ E Q +E Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 IDHIADKTNFNGNAFLGGTGAGGKDITIQLSDASSDTMKITAIDTKAITTATLATATATG 180 ID ++++T FNG L I + +D + T+ + ID K++ Sbjct: 122 IDRVSNQTQFNGVKVLSQD--NQMKIQVGANDGETITIDLQKIDVKSLGLDGF-NVNGPK 178 Query: 181 PDKALNAASAPAQITALDTAIQGIADARATFGSQLNRLDHNLNNVTSQATNMAASASQIE 240 + S+ +T DT G R S D V + AA+ Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238 Query: 241 DADMAKEMSNMTKFKILNEAGISMLSQANQT 271 D ++ K + A Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 80.9 bits (199), Expect = 2e-19 Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 1/252 (0%) Query: 30 LSSGKSINSAADDAAGLAIATRMRAKEGGLNVGARNTQDAMSALRTGDAALGSVSNILLR 89 + + A G K + + D + T + Sbjct: 256 TAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADI 315 Query: 90 MRDLATQASSGTNNDKDIASMDKEYQALAQEIDHIADKTNFNGNAFLGGTGAGGKDITIQ 149 A ++ + K++ + Q + + A G + Sbjct: 316 TAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGA 375 Query: 150 LSDASSDTMKIT-AIDTKAITTATLATATATGPDKALNAASAPAQITALDTAIQGIADAR 208 A++ K+T A T I +T D A S + ++D+A+ + R Sbjct: 376 EYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVR 435 Query: 209 ATFGSQLNRLDHNLNNVTSQATNMAASASQIEDADMAKEMSNMTKFKILNEAGISMLSQA 268 ++ G+ NR D + N+ + TN+ ++ S+IEDAD A E+SNM+K +IL +AG S+L+QA Sbjct: 436 SSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQA 495 Query: 269 NQTPQMVSKLLQ 280 NQ PQ V LL+ Sbjct: 496 NQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 126 bits (317), Expect = 3e-35 Identities = 77/272 (28%), Positives = 121/272 (44%), Gaps = 4/272 (1%) Query: 1 MRINTNINSMRTQEYMRQNQDKMNTSMNRLSSGKSINSAADDAAGLAIATRMRAKEGGLN 60 INTN S+ TQ + ++Q +++++ RLSSG INSA DDAAG AIA R + GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 VGARNTQDAMSALRTGDAALGSVSNILLRMRDLATQASSGTNNDKDIASMNKEYQALAQE 120 +RN D +S +T + AL ++N L R+R+L+ QA++GTN+D D+ S+ E Q +E Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 IDHIADKTNFNGNAFLGGTGAGGKDITIQLSDASSDTMTIAAIDTKDITTTKLAVGADPA 180 ID ++++T FNG L I + +D + T+ + ID K + V Sbjct: 122 IDRVSNQTQFNGVKVLSQD--NQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNG--P 177 Query: 181 SATKNLNATTAATEITALDTAIQNIADARATFGSQLNRLDHNLNNVTSQATNMAASASQI 240 + ++ +T DT R S D V + AA+ Sbjct: 178 KEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLT 237 Query: 241 EDADMAKEMSNMTKFKILNEAGISMLSQANQT 272 D ++ K + A Sbjct: 238 TDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 78.9 bits (194), Expect = 1e-18 Identities = 49/252 (19%), Positives = 94/252 (37%) Query: 30 LSSGKSINSAADDAAGLAIATRMRAKEGGLNVGARNTQDAMSALRTGDAALGSVSNILLR 89 + + A G K + + D + T + Sbjct: 256 TAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADI 315 Query: 90 MRDLATQASSGTNNDKDIASMNKEYQALAQEIDHIADKTNFNGNAFLGGTGAGGKDITIQ 149 A ++ + K++ + Q + + A G + Sbjct: 316 TAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGA 375 Query: 150 LSDASSDTMTIAAIDTKDITTTKLAVGADPASATKNLNATTAATEITALDTAIQNIADAR 209 A++ + + + + + A + ++D+A+ + R Sbjct: 376 EYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVR 435 Query: 210 ATFGSQLNRLDHNLNNVTSQATNMAASASQIEDADMAKEMSNMTKFKILNEAGISMLSQA 269 ++ G+ NR D + N+ + TN+ ++ S+IEDAD A E+SNM+K +IL +AG S+L+QA Sbjct: 436 SSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQA 495 Query: 270 NQTPQMVSKLLQ 281 NQ PQ V LL+ Sbjct: 496 NQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 131 bits (330), Expect = 4e-37 Identities = 78/272 (28%), Positives = 125/272 (45%), Gaps = 7/272 (2%) Query: 1 MRINTNINSMRTQEYMRQNQDKMNTSMNRLSSGKSINSAADDAAGLAIATRMRAKEGGLN 60 INTN S+ TQ + ++Q +++++ RLSSG INSA DDAAG AIA R + GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 VGARNTQDAMSALRTGDAALGSVSNILLRMRDLATQASSGTNNDKDIASMDKEYQALAQE 120 +RN D +S +T + AL ++N L R+R+L+ QA++GTN+D D+ S+ E Q +E Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 INHIADKTNFNGNAFLNKGTNPGEGKDITIQLSDASSDTMTIAAIDTKDITTTKLATDGT 180 I+ ++++T FNG L++ I + +D + T+ + ID K + +G Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQ----MKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGP 177 Query: 181 K---KLDATTAATEITALDTAIQEIADARATFGSQLNRLDHNLNNVTSQATNMAASASQI 237 K D ++ +T DT R S D V + AA+ Sbjct: 178 KEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLT 237 Query: 238 EDADMAKEMSNMTKFKILNEAGISMLSQANQT 269 D ++ K + A Sbjct: 238 TDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 78.9 bits (194), Expect = 9e-19 Identities = 52/252 (20%), Positives = 99/252 (39%), Gaps = 3/252 (1%) Query: 30 LSSGKSINSAADDAAGLAIATRMRAKEGGLNVGARNTQDAMSALRTGDAALGSVSNILLR 89 + + A G K + + D + T + Sbjct: 256 TAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADI 315 Query: 90 MRDLATQASSGTNNDKDIASMDKEYQALAQEINHIADKTNFNGNAFLNKGTNPGEGKDIT 149 A ++ + K++ + Q + + A + Sbjct: 316 TAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGA 375 Query: 150 IQLSDASSDTMTIAAIDTKDITTTKLATDGTKKLDATTAAT---EITALDTAIQEIADAR 206 ++A+ D +T+A T + + A + + ++D+A+ ++ R Sbjct: 376 EYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVR 435 Query: 207 ATFGSQLNRLDHNLNNVTSQATNMAASASQIEDADMAKEMSNMTKFKILNEAGISMLSQA 266 ++ G+ NR D + N+ + TN+ ++ S+IEDAD A E+SNM+K +IL +AG S+L+QA Sbjct: 436 SSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQA 495 Query: 267 NQTPQMVSKLLQ 278 NQ PQ V LL+ Sbjct: 496 NQVPQNVLSLLR 507
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.005 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 121 ELTNKY-NIQKIRSSNEGKYEDIIDRASSTYGIPKTLIQKMIE 162 + + Y + I+ + ++E+ I+ A +P L+Q ++E Sbjct: 223 TVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVE 265
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 41.5 bits (97), Expect = 4e-08 Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 64 + +P+ + F + + +L + + L L + + V +M +G G+++ N Sbjct: 228 NQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDT 287 Query: 65 MYVEIVE 71 + VEI E Sbjct: 288 LGVEIHE 294
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 144 bits (364), Expect = 2e-42 Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 10/329 (3%) Query: 4 EKLSQEQIDALLKAVNEGEEMPAFAQEAGKQDKFQEYDFNRPEKFGVEHLRSLQAIASTF 63 E LSQ++ID LL A++ G+ A+ K YDF RP+KF E +R+L + TF Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 64 GKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIVIEI 123 + T+ +LSA++R + + ++V+Q+ + E++ +P L VI + P G V+E+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTY-EEFIRSIPTPSTL-AVITMD-PLKGNAVLEV 119 Query: 124 DLAFVIYIHECWLGGDSKRNFTMRRPLTAFEFLTLDNIFLLLCKNLEQSFESVVAIEPKF 183 D + I + GG + ++R LT E ++ + + + N+ +S+ V+ + P+ Sbjct: 120 DPSITFSIIDRLFGGT-GQAAKVQRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRL 178 Query: 184 VTTETDPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSVEEIMDKLTSENIVEHS 243 ET+P +I S+++ L+ + K + IP++++E I+ KL+S+ S Sbjct: 179 GQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFW--FS 236 Query: 244 SDKRKK---YTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEGDIIPLH-TKVSDQLR 299 S +R Y + K++ V V VG ++++ +I + GDII LH T V D Sbjct: 237 SVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFV 296 Query: 300 GYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 + + KF C G G + A IE Sbjct: 297 LSIGNRKKFLCQPGVVGKKIAAQILERIE 325
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 58.0 bits (140), Expect = 5e-14 Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 13 LEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVD 72 ++ G ID + DI ++L V+LG++ +T+ ++ +L G V+ ++ G +D Sbjct: 39 FQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98 Query: 73 VYLSDMKVGIGEAIVMDEKFGIIISEIEADKKHA 106 + ++ + GE +V+ +K+G+ I++I + Sbjct: 99 ILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 163 bits (415), Expect = 4e-52 Identities = 70/203 (34%), Positives = 127/203 (62%) Query: 48 SSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLF 107 VQ +T L+ +I+L+ T FT +IV G+ R LG + PPNQVL+GLALFL+ F Sbjct: 40 LPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFF 99 Query: 108 TMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKDYMSKHTYKHDLKMMLKVRGEELP 167 M PV+ ++ D + P ++EKI++ +A E A ++++M + T + DL + ++ Sbjct: 100 IMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPL 159 Query: 168 KDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSL 227 + + + + L+P++ ++++ G I++ F+ IDL+I+++LM LGMMMVPP ++L Sbjct: 160 QGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIAL 219 Query: 228 PFKILVFVYLGGYTKIVDIMFKT 250 PFK+++FV + G+ +V + ++ Sbjct: 220 PFKLMLFVLVDGWQLLVGSLAQS 242
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 38.2 bits (89), Expect = 3e-07 Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 4 SPIIDIFQTFFYKGVMILMPIAVVSMIVVIIIAVIMAMMQIQEQTLTFLPKMASIVLVII 63 ++ Y +++ +V+ I+ +++ + + Q+QEQTL F K+ + L + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 ILGPWMFQELTMLILDLFDKI 84 +L W + L + Sbjct: 62 LLSGWYGEVLLSYGRQVIFLA 82
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 96.0 bits (239), Expect = 7e-26 Identities = 51/233 (21%), Positives = 113/233 (48%), Gaps = 1/233 (0%) Query: 10 FFAFCRITSFLYFLPFFSGRSIPAMAKVTFGLALSITVADQVDVSHIKTVWDVAA-YAGT 68 F+ R+ + + P S RS+P K+ + ++ +A + + + A A Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQ 76 Query: 69 QIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFDIFFLII 128 QI+IG++L ++ + + AG I+ +GLS A+ D + +L+ I D+ L++ Sbjct: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 Query: 129 FISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPLMGSLFI 188 F++ G + ++ ++ +F + L ++ +L + + +ALPL+ L Sbjct: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 Query: 189 INFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNMTDVLLE 241 +N L L+ + APQL++F+ + + +T GI +A +P++ +++ + Sbjct: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 287 bits (737), Expect = 1e-97 Identities = 90/343 (26%), Positives = 184/343 (53%), Gaps = 2/343 (0%) Query: 4 DNKTEKATPQKRKKSREEGNIARSKDLNNLFSILVLAVVVYFFGDWLGYEIAHSVAVLFD 63 KTE+ TP+K + +R++G +A+SK++ + I+ L+ ++ D+ + + + + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 64 QIGKNTDS--TEYFYLMGILLLKVSAPILILVYAFHLFNYMIQVGFLFSSKVLKPKASRI 121 Q + + + + P+L + + ++++Q GFL S + +KP +I Sbjct: 63 QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKI 122 Query: 122 NPKNYFTRLFSRKSLVDILKSLFYMGLIGYVSYVLFKKNLEKIVSMIGFNWTASLTEIIS 181 NP R+FS KSLV+ LKS+ + L+ + +++ K NL ++ + + Sbjct: 123 NPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQ 182 Query: 182 QIKFIFLAILIILIVLSIIDFIYQKWEYEQDIKMKKEEVKQEHKDNEGDPQVKGKRKNFM 241 ++ + + + +V+SI D+ ++ ++Y +++KM K+E+K+E+K+ EG P++K KR+ F Sbjct: 183 ILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQFH 242 Query: 242 HAILQGTIAKKMDGATFIVNNPTHISVVLRYNKQVDAAPIVVAKGEDELALYIRTLAREQ 301 I + + + ++ +V NPTHI++ + Y + P+V K D +R +A E+ Sbjct: 243 QEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEE 302 Query: 302 EIPMVENRPLARSLYYQVEEDETIPEDLYVAVIEVMRYLIQTK 344 +P+++ PLAR+LY+ D IP + A EV+R+L + Sbjct: 303 GVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 38.6 bits (90), Expect = 7e-05 Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 19/163 (11%) Query: 192 IFGIVILFVNIIFGLIVGMMQQGMSFADAAI-----------HYTQLTVGDGIVNQIGSL 240 +L V + + ++Q G + AI ++ +V + S+ Sbjct: 85 YLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSI 144 Query: 241 MLAISTGIIVTRVFDGSADTVTEGIFKELLAHEVVVYALGGLFIAMGVFTPLPFLPFALV 300 + + I++ + G+ T+ + E + LG + + V + F+ ++ Sbjct: 145 LKVVLLSILIWIIIKGNLVTLLQLPT---CGIECITPLLGQILRQLMVICTVGFVVISIA 201 Query: 301 GGTI-IFLGVRNKKRIKKEKEDELQKELE---MIQGDEEQLQQ 339 + ++ K K E + E KE+E I+ Q Q Sbjct: 202 DYAFEYYQYIKELKMSKDEIKREY-KEMEGSPEIKSKRRQFHQ 243
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.5 bits (66), Expect = 0.015 Identities = 6/40 (15%), Positives = 15/40 (37%) Query: 2 NGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSK 41 + + G+ +N SNN+++ G+ + Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 3e-17 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 3/116 (2%) Query: 14 KIKILIADDNSFIREGMKIILNTYEEFEVLDTVNDGKEAVAYCKKYEVDIALLDVRMPNM 73 IL+ADD++ IR + L+ ++V ++ + + D+ + DV MP+ Sbjct: 3 GATILVADDDAAIRTVLNQALS-RAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 74 NGVEATKLICEETKTKPLILTT-FDDDEYILDAVKNGAKGYLLKNNDPERIRDAIK 128 N + I + P+++ + + + A + GA YL K D + I Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 340 bits (873), Expect = e-122 Identities = 208/213 (97%), Positives = 212/213 (99%) Query: 1 MEAFIRSDQYNFIKSQAYILANGHATANDRGVIQALKSLAIEKIIHVFENLTDEQKELID 60 MEAFIRSDQYNFIKSQAYILANGHATANDRGVIQALKSLAIEKIIHVFENLTDEQKELID Sbjct: 7 MEAFIRSDQYNFIKSQAYILANGHATANDRGVIQALKSLAIEKIIHVFENLTDEQKELID 66 Query: 61 TVLTVQNREDAESFLLKINPYVIPFQEVTAQTLKKLFPKAKKLKLPDMEELDMKELTYLS 120 TVLTVQNREDAESFLLKINPYVIPFQEVTAQTLKKLFPKAKKLKLPDMEELDMKEL+YLS Sbjct: 67 TVLTVQNREDAESFLLKINPYVIPFQEVTAQTLKKLFPKAKKLKLPDMEELDMKELSYLS 126 Query: 121 WIDKGSSRKFIIAKNDENKFVGLQGTFQSLNKKSICSLCHGHEEVGMFLVEIKGDVPGTF 180 WIDKGSSRKFIIAKND+NKFVGLQGTFQSLNKKSICSLCHGHEEVGMFLVEIKGD+PGTF Sbjct: 127 WIDKGSSRKFIIAKNDKNKFVGLQGTFQSLNKKSICSLCHGHEEVGMFLVEIKGDIPGTF 186 Query: 181 VRKGNYICKDGVACNHNMKSLDKLQDFIERLKK 213 V+KGNYICKDGVACN NMKSLDKLQDFIERLKK Sbjct: 187 VKKGNYICKDGVACNQNMKSLDKLQDFIERLKK 219
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.2 bits (218), Expect = 5e-23 Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 21/263 (7%) Query: 2 LKGKIALVTGASRGIGRAIAKRLANDGALV-AVHYGNRKEDAEETVHEIQSNGGSAFSIG 60 ++GKIA +TGA++GIG A+A+ LA+ GA + AV Y K + + + ++ AF Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP-- 63 Query: 61 ANLESLHGVDNLYISLDNELQKRTGGTQFDILINNAGIGPGAFIEETTEQFFDRMVSVNA 120 A++ +D + +++ G DIL+N AG+ I +++ ++ SVN+ Sbjct: 64 ADVRDSAAIDEIT----ARIEREMGP--IDILVNVAGVLRPGLIHSLSDEEWEATFSVNS 117 Query: 121 KAPFFIIQQALPRLRD--NSRIINISSAATRISLPDFVAYSMTKGAINTMTFTLAKQLGA 178 F + + D + I+ + S + AY+ +K A T L +L Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 179 RGITVNAILPGFIKTDMNAELLSDP---------MMKQYATTISAFNRLGEVEDIADTAA 229 I N + PG +TDM L +D ++ + T I +L + DIAD Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIP-LKKLAKPSDIADAVL 236 Query: 230 FLSSPDSRWVTGQLIDVSGGSCL 252 FL S + +T + V GG+ L Sbjct: 237 FLVSGQAGHITMHNLCVDGGATL 259
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 103 bits (258), Expect = 2e-27 Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 51/261 (19%) Query: 66 HTLMLPPEVRFPEQVFTRDVGFTIGETVFISNMKNEVRKGE----ERIFK---KTLSEQD 118 + ++ P P +FTRD +IG V I+ M +VR+ E E IFK Sbjct: 149 NLFIIDP---MPNVLFTRDPFASIGNGVTINKMFTKVRQRETIFAEYIFKYHPVYKENVP 205 Query: 119 IAYIDCINSHIEGGDV-IIDQDIVYIGVSNRTLFNSVKKLQQLLTHYK-------IIPVP 170 I + +EGGD ++++ ++ IG+S RT SV+KL L K +P Sbjct: 206 IWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSVEKLAISLFKNKTSFDTILAFQIP 265 Query: 171 FSKDFLHLDCVFNIISKEEALIYP------------HAFSNSTLKMLSDRYNLIEVSKK- 217 ++ ++HLD VF I + + S+S + + ++ + +V Sbjct: 266 KNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVLTYNPSSSKIHIKKEKARIKDVLSFY 325 Query: 218 --------------------EQFTLATNVLSLGNKKMISLPSNTKTNKELRLRGYEVIEI 257 EQ+ NVL++ ++I+ N TNK G +V I Sbjct: 326 LGRKIDIIKCAGGDLIHGAREQWNDGANVLAIAPGEIIAYSRNHVTNKLFEENGIKVHRI 385 Query: 258 DFGEIIKSGGSFRCCTLPIQR 278 E+ + G RC ++P+ R Sbjct: 386 PSSELSRGRGGPRCMSMPLIR 406
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.4 bits (68), Expect = 0.006 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%) Query: 158 TLKESFVKAIG----KGLLY----PLDSFGFNMDDWSQNKITLRNTNSDFSQFYFCLNRL 209 TLKE+ A G G L + F FN D + I + + + Y L+++ Sbjct: 551 TLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKI 610 Query: 210 EQN 212 + N Sbjct: 611 KLN 613
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.7 bits (69), Expect = 0.017 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 13/92 (14%) Query: 739 YQQASQVLQAAIQKDMKNIELLNQLGIVYYEAGQFYETRDGAKSNAAYQQALDAYNRVVN 798 Y+ A +V QA D + LG GQ Y A+ +Y+ Sbjct: 52 YEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQ-------------YDLAIHSYSYGAI 98 Query: 799 SGTRDINTLVNIGILYDKVGQGNEAEKFFTEA 830 ++ + + G+ EAE A Sbjct: 99 MDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130 Score = 29.5 bits (66), Expect = 0.037 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 6/109 (5%) Query: 596 REIDKENNEAAYLLASANFRIGKYQEAVLNFEQALANNAKGIEPYKKDAMRDLAVSHMKM 655 EI + E Y LA ++ GKY++A F+ ++ Y L M Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCV-----LDHYDSRFFLGLGACRQAM 83 Query: 656 KEFEKAEDVIVKMSTKTNEDKAIVSYLKGQLSTATVQLDKAESFFKEAI 704 +++ A + ++ + + +L +AES A Sbjct: 84 GQYDLAIHSYSYGAIMDIKE-PRFPFHAAECLLQKGELAEAESGLFLAQ 131
>cloacin#Cloacin signature. Length = 551 Score = 42.4 bits (99), Expect = 7e-06 Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 1/80 (1%) Query: 166 GTGTEGTGTEGTGTEGTGTGGTGTGGTGTGGTGTGGTGTEGTGTGGTGTEGTGTGGTGTG 225 G G T T G GG G G G + G +E GG G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 226 GTGTGGTGTGGTGTGGTGTG 245 G G GG G G G+G G Sbjct: 63 GNG-GGNGNSGGGSGTGGNL 81 Score = 42.4 bits (99), Expect = 9e-06 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 162 TGTEGTGTEGTGTEGTGTEGTGTGGTGTGGTGTGGTGTGGTGTE-GTGTGGTGTEGTGTG 220 +G +G G +G G G G GG + G+G G G+G G G+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 221 GTGTGGTGTGGTGTGGTGTG 240 GG G G G+G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 35.8 bits (82), Expect = 8e-04 Identities = 21/70 (30%), Positives = 29/70 (41%) Query: 184 TGGTGTGGTGTGGTGTGGTGTEGTGTGGTGTEGTGTGGTGTGGTGTGGTGTGGTGTGGTG 243 +GG G G + +G TG G G G+G + GG+G+G GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 244 TGGTGTGGTG 253 G G G Sbjct: 62 HGNGGGNGNS 71
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 5e-04 Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 29/170 (17%) Query: 9 QLEQ-IAKNISEMQTHSQNIQQNLNQSMFSIQMQW--------QGATSQHFY----GEYM 55 Q E + K +E T I + + + A ++H +Y+ Sbjct: 204 QKELNLDKKRAERLTVLARIN-RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYV 262 Query: 56 RSMRLMESYIRNLQVTEKELRRIAQKFRQADEEYQKKQTEKLKETHKKEKKHEKSWWEKG 115 ++ + Y L+ E E+ ++++ + ++ + +KL++T Sbjct: 263 EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE----- 317 Query: 116 IEGAAEFIGVNDAIRAVTGKDPITG--KELS--TKERLIAAGWTLLNFVP 161 E IRA P++ ++L T+ ++ TL+ VP Sbjct: 318 -LAKNEERQQASVIRA-----PVSVKVQQLKVHTEGGVVTTAETLMVIVP 361
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.6 bits (74), Expect = 0.001 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 31 VNHFEKGKLICDKDDEIHRLYF-VIKGKVKVYTITPEGKKLILRFINPLAIVG 82 ++++E+GK + K DE + F +KG + + +L+F+ PL G Sbjct: 504 IDYYEEGKRLEKKXDEFQKQVFDPLKGNIDLSDS---KSSTLLKFVTPLLTPG 553
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 27.4 bits (60), Expect = 0.024 Identities = 13/56 (23%), Positives = 36/56 (64%) Query: 11 MNLLLNMSGTFKLLSEKSTEFTHLEQHIVEYIAQQKVAVNLKMIASYLNIPKQQLS 66 +++L+N SG++ ++ +S + + +V++ +Q A++ +M+A++ I Q++S Sbjct: 622 LSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIHRQMMAAHAAITLQEVS 677
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 78.5 bits (193), Expect = 3e-20 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 12/190 (6%) Query: 18 KSTKEIILEVATRLFLTQNYQVVSMDEVAKECGVTKATVYYYYSTKADLFTATMIQMMVR 77 + T++ IL+VA RLF Q S+ E+AK GVT+ +Y+++ K+DLF+ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 78 IRENMDQILS-TNKTLEERLLNFATVYLHATMDIDMNNFMKDAKLSLSEEQLKEL----- 131 I E + + L L +T+ + + + + E + E+ Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEI-IFHKCEFVGEMAVVQQ 128 Query: 132 --KNAEDNMYEVLEKALDNAILLGEIPKG-NPKFAAHAFVALLS--IGNFKDENHNPTLA 186 +N Y+ +E+ L + I +P + AA +S + N+ + L Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLK 188 Query: 187 NIDELAKEIV 196 I+ Sbjct: 189 KEARDYVAIL 198
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 53.3 bits (128), Expect = 3e-09 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 25/232 (10%) Query: 203 LLVATVLLVLVLLILLYRSPILAILPLLVVGFAYGIISPTLGFLADNGWIKVDAQAISIM 262 L A +L+ LV+ + L ++ ++P + V + T LA G+ +I+ + Sbjct: 344 LFEAIMLVFLVMYLFL-QNMRATLIPTIAVPVV---LLGTFAILAAFGY------SINTL 393 Query: 263 T----VLLFGAGTDYCLFLISRYKEYLLEEESKYK-ALQLAIKASGGAIIMSALTVVLGL 317 T VL G D + ++ + ++E++ K A + ++ GA++ A+ + Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 318 GTLLL--AHYGAFHR-FAVPFSVAVFIMGIAALTILPALLLIFGRVVFFPFIPRTAEMNE 374 + GA +R F++ A+ + + AL + PAL + P +AE +E Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK-------PVSAEHHE 506 Query: 375 EFARKKKKVVKVKNTKGFFSKKLGDIVVRKPWTIIMLTVFLLGGLASFVPRI 426 + ++ +++ ++ G+ R+ Sbjct: 507 NKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRL 558 Score = 38.7 bits (90), Expect = 1e-04 Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 9/161 (5%) Query: 203 LLVATVLLVLVLLILLYRSPILAILPLLVVGFAYGIISPTLGFLADNGWIKVDAQAISIM 262 L+ + ++V + L LY S + + +LVV I+ L N V + Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLG--IVGVLLAATLFNQKNDVYFM---VG 929 Query: 263 TVLLFGAGTDYCLFLISRYKEYLLEE-ESKYKALQLAIKASGGAIIMSALTVVLGLGTLL 321 + G + ++ K+ + +E + +A +A++ I+M++L +LG+ L Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 322 LAH---YGAFHRFAVPFSVAVFIMGIAALTILPALLLIFGR 359 +++ GA + + + + A+ +P ++ R Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 4e-05 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 49 YSSVEMMKYLIEELD--TYKVIMDEKVIGGIIVTISGKSYGRIDRIFVEPFLQGKGIGSR 106 Y +M +EE + ++ IG I + + Y I+ I V + KG+G+ Sbjct: 50 YEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTA 109 Query: 107 VIKLIEE---KFPNIRIWDLETSSRQINNHHFYKKMGYEI 143 ++ E + + LET I+ HFY K + I Sbjct: 110 LLHKAIEWAKENHFCGLM-LETQDINISACHFYAKHHFII 148
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.2 bits (86), Expect = 1e-05 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 11/91 (12%) Query: 54 FVAEYDGEVVGFVGLTQSPGRRSHSGDLFIGVDSEYHNKGIGKALLTKMLDLADNWLMLE 113 F+ + +G + + + + D I V +Y KG+G AL L A W E Sbjct: 68 FLYYLENNCIGRIKIRSNWNGYALIED--IAVAKDYRKKGVGTAL----LHKAIEW-AKE 120 Query: 114 RVELGV-LET---NPRAKVLYEKFGFEEEGV 140 G+ LET N A Y K F V Sbjct: 121 NHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 5e-05 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 180 GGATGATGATGAT--GATGATGATGATGATGGGATGATGATGATGATGATGATGATGATG 237 G TGA +G G TG GA+ +G + G+ G +G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 238 ATGATGATGATGATGATGATGATGATGATGVTGGGAIIPFASGTTPSALVNALIANTGTL 297 + G +G G A A A G + GG + ++G +A+ + + A G Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGP- 126 Query: 298 LGFGFSQPGVALTG 311 F F GVAL G Sbjct: 127 --FKFGLWGVALYG 138 Score = 30.8 bits (69), Expect = 0.012 Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 4/83 (4%) Query: 153 INATPGATGPTGP----TGPTGPTGPTGATGGGATGATGATGATGATGATGATGATGATG 208 IN P G G +G + P G G G +G G + G +G G Sbjct: 20 INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79 Query: 209 GGATGATGATGATGATGATGATG 231 + A A GA G Sbjct: 80 NLSAVAAPVAFGFPALSTPGAGG 102
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 28.7 bits (64), Expect = 0.042 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 15 ESIHKLNYKTFVEEIPQHEETKDRVRIDRFHEENT-YLICLDDDKLVGMVAL 65 + L +TF + + + D + D++ NT YL + D+ ++ + Sbjct: 18 GELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNTVICSLRF 69
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.9 bits (168), Expect = 1e-16 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 13/173 (7%) Query: 9 ERRNEILETAERLFVTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEII----MRI 64 E R IL+ A RLF +G + T++ +I K G+ +G Y +FK K ++ EI I Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 65 IKADVAKAKAIVSNPNIPVLDKLFRVLMEQSPKSGDVKDKMIEQFHQPNNA-EMHQKSIV 123 + ++ +P + VL ++ ++E + + M FH+ EM Sbjct: 71 GELELEYQAKFPGDP-LSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 124 QSIIHLSPV--LAEILEQGIAEGIFSTPY-PQETIELLLSSAQVIFDEGLFQW 173 Q + L + + L+ I + + ++ + W Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY----ISGLMENW 178
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 3e-06 Identities = 53/344 (15%), Positives = 126/344 (36%), Gaps = 26/344 (7%) Query: 39 DITGRADIFAGLYAVTSIPFLLAPLGGAIADRFNRRDLMVIFDFINAAIVLSFIVLLFTG 98 D+T I LYA+ F AP+ GA++DRF RR +++ AA+ + ++ Sbjct: 40 DVTAHYGILLALYALMQ--FACAPVLGALSDRFGRR-PVLLVSLAGAAV--DYAIMATAP 94 Query: 99 PVSIILIGTIMFLLAVVSAMYSPVVMASIPQLVPENKLEQANGIVNGVQSLSNIVAPVFG 158 + ++ IG I +A ++ V A I + ++ + G ++ + PV G Sbjct: 95 FLWVLYIGRI---VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG 151 Query: 159 GILYGIIGLKMLVIISCLAFFLSAILEMFIKIPFIKRARESHIIPTIVKDMKEGFIYVLK 218 G++ G + L+ + F+ +P + + + + Sbjct: 152 GLM-GGFSPHAPFFAAAALNGLNFLTGCFL-LPESHKGERRPLRREALNPLASFRWARGM 209 Query: 219 QPFI--LKSMLLAALLNLILTPLFVVGAPIIIRVTMESSDTLYGIGMGLIDFATILGALS 276 + + L+ + L+V+ R +++ + I ++ A+ Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFG--EDRFHWDATTIGISLAAFGI-LHSLAQAMI 266 Query: 277 IGFFAKKLQMKTLYYWMLLIALLVLPMALSVTPVILNLGYYPPFILFILSSILIAMIVTI 336 G A +L + ++ + T + +P +L I + + + Sbjct: 267 TGPVAARLGERRALMLGMIADGTGYILLAFATRGWM---AFPIMVLLASGGIGMPALQAM 323 Query: 337 VSIYVITVVQKKTPNENLGKVMAIITAVSQCMAPIGQVIYGFMF 380 +S V E G++ + A++ + +G +++ ++ Sbjct: 324 LSRQV--------DEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 5e-16 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 3 TIMIVEDDIKIAELLGTHIEKYGYQSVMIEDFENVLDTFQKIKPDLVLLDVNLPNFDGYY 62 TI++ +DD I +L + + GY + + + DLV+ DV +P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 WCRQIRAI-STCPIVFLSARSGEMDQVMALENGGDDYITKPFYYEVVMSKIRSQLRR 118 +I+ P++ +SA++ M + A E G DY+ KPF ++ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 2e-04 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 26/111 (23%) Query: 221 RFILNQVLSNAIKYSSSKKE---KVIVSAYSKGRAIILEVRDYGVGIPTADLPRVFHPFY 277 ++ ++ N IK+ ++ K+++ + LEV + G Sbjct: 257 PMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT--------- 307 Query: 278 TGENGRKFKESTGMGLYLVKE----VCGKLNHKIELESEVDKGTIVRIIFP 324 KESTG GL V+E + G +I+L + ++ P Sbjct: 308 --------KESTGTGLQNVRERLQMLYGT-EAQIKLSEK-QGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 100 bits (251), Expect = 8e-27 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 3 SKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPNMDGI 62 + IL+ DDD IR +++ L G + +A + + DL++ D++MP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 + +I++ R ++P++++SA++ + I+ GA DYL KPF+ ELI + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 55.2 bits (133), Expect = 1e-10 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 16/160 (10%) Query: 5 RFITIVTVLTLFCSMAVPFGRASA-ETVPAIDVEAGSAI---LVEANSGKILYQKNADES 60 R+I + + L E + + + + ++ SG+ L ADE Sbjct: 2 RYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 61 Query: 61 LAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLEN---GGSYT 117 + S K++ V VD G + ++K+ Q + P+ T Sbjct: 62 FPMMSTFKVVLCGAVLARVDAGDEQLERKI-------HYRQQDLVDYSPVSEKHLADGMT 114 Query: 118 VKELYEAMVIYSANGATIALAEEIAG-KEVN-FVKMMNDK 155 V EL A + S N A L + G + F++ + D Sbjct: 115 VGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDN 154
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 6e-18 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 3/138 (2%) Query: 3 KIMIVEDDQKISKLLQSHINKYGYEGNITEDFENILANFEKIQPDLVLLDVNLPSFDGFY 62 I++ +DD I +L +++ GY+ IT + + DLV+ DV +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 WCRQIRTV-STCPIIFISARSGEMEQVMALEHGADDYITKPFHYEVVMAKIRSHLRRIYG 121 +I+ P++ +SA++ M + A E GA DY+ KPF ++ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 EYAPKAEERVVQQSGLIL 139 P E Q ++ Sbjct: 125 R--PSKLEDDSQDGMPLV 140
>PF06580#Sensor histidine kinase Length = 349 Score = 44.1 bits (104), Expect = 4e-07 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 23/108 (21%) Query: 221 RFVIHQVISNAIKYSAGSRKN---VTITTLEEERSVILEIHDHGVGIPKEDLPRVFRPFY 277 ++ ++ N IK+ + + ++ +V LE+ + G K Sbjct: 257 PMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT--------- 307 Query: 278 TGINGRKFKESTGMGLYLVKNIIKRL---EHDIEIKSEVGKGTTICII 322 KESTG GL V+ ++ L E I++ + GK + +I Sbjct: 308 --------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 382 bits (982), Expect = e-136 Identities = 97/263 (36%), Positives = 145/263 (55%), Gaps = 3/263 (1%) Query: 47 HKNHATYKEFSQLEKKFDARLGVYAIDTGTNRTI-AYRPNERFAFASTYKALAAGVLLQQ 105 H + ++ E + R+G+ +D + RT+ A+R +ERF ST+K + G +L + Sbjct: 20 HASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLAR 79 Query: 106 NSIDK--LNEVITYTKDDLVEYSPITEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIG 163 L I Y + DLV+YSP++EKH+ GM +GE+ AA+ SDN+A N+L +G Sbjct: 80 VDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVG 139 Query: 164 GPKGYEKALRQMGDRVTIADRFEPELNEATPGDIRDTSTAKAIATNLKAFTVGNALPADK 223 GP G LRQ+GD VT DR+E ELNEA PGD RDT+T ++A L+ L A Sbjct: 140 GPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARS 199 Query: 224 RKVLTEWMKGNATGDKLIRAGVPTDWIVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILS 283 ++ L +WM + LIR+ +P W + DK+GAG G R +A++ P N+A I+ I Sbjct: 200 QRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVALLGPNNKAERIVVIYL 259 Query: 284 SKDEKEAAYDNQLIAEATEVIVK 306 A NQ IA +++ Sbjct: 260 RDTPASMAERNQQIAGIGAALIE 282
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.2 bits (104), Expect = 7e-08 Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 10 TKKNISNTLITLLNEKEFGRITTKDICIHAMVSKSTFYSHFADKYDLLEKLVQ 62 T+++I + + L +++ + +I A V++ Y HF DK DL ++ + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64
>BORPETOXINA#Bordetella pertussis toxin A subunit signature. Length = 269 Score = 27.8 bits (61), Expect = 0.009 Identities = 12/41 (29%), Positives = 23/41 (56%) Query: 8 SSQQSNPKIPSQQVNANTKQGNNKKTRRRIITTLAFILPII 48 +++ SN + SQQ AN ++++ I+ TL + P+I Sbjct: 192 TTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVI 232
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.5 bits (66), Expect = 0.005 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 7/110 (6%) Query: 36 TYPLNEQQLEKYTESANTLAFKIMDEETKAVIGHISLGQIDNINKSARIGKVLVGNTNMR 95 Y ++ + E ++ IG I + N N A I + V R Sbjct: 49 QYEDDDMDVSYVEEEGKAAFLYYLENN---CIGRIKIRS--NWNGYALIEDIAVAKDY-R 102 Query: 96 GRSIGKHMMKAVLRIAFDELKLHRVTLGVYDFNKSAISCYERIGFVKEGL 145 + +G ++ + A E + L D N SA Y + F+ + Sbjct: 103 KKGVGTALLHKAIEWA-KENHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 36.7 bits (85), Expect = 9e-05 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 19/159 (11%) Query: 39 ILIDTNSGEIV--YKKNEETPIQSATLSKLMTEYIALEQLNEGKIQLDELVKISNEVFRA 96 I +D SG + ++ +E P+ S K++ L +++ G QL+ + + Sbjct: 43 IEMDLASGRTLTAWRADERFPMMST--FKVVLCGAVLARVDAGDEQLERKIHYRQQDLV- 99 Query: 97 ETSPIQVTSKDKT-TVRDLLHALFLTGNNRSALALAEHIAGNEDNFTLLMNDKAKQL--- 152 + SP+ TV +L A +N +A L + G + +Q+ Sbjct: 100 DYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAG-----LTAFLRQIGDN 154 Query: 153 --KLSQPSPFLNATGINNDTNKQSTTTSIDAAKLATQLV 189 +L + LN + D + TTT A +L+ Sbjct: 155 VTRLDRWETELN-EALPGD--ARDTTTPASMAATLRKLL 190
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 8e-24 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 5 ILIIDDDKDIVELLAVYLRNEGYNIYKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLEV 64 IL+ DDD I +L L GY++ + + I + DL++ D++MP N ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 CQEVRE-NNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARV-KALLRRSSF 122 +++ +P+L++SA+ M I GA DY+ KPF+ EL+ + +AL Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 123 QNATSQKNEDG 133 + ++DG Sbjct: 126 PSKLEDDSQDG 136
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.5 bits (97), Expect = 9e-07 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 47 NSLEHSFLALDGDKCVGVIL--GGIKVYESIKTMRCGTLAVHPEFRGIGVSQKLFELHKE 104 + +FL + C+G I Y I+ +AV ++R GV L E Sbjct: 62 EEGKAAFLYYLENNCIGRIKIRSNWNGYALIED-----IAVAKDYRKKGVGTALLHKAIE 116 Query: 105 EATQNKCKQLFLEVIVGNDRAIHFYNKLGY 134 A +N L LE N A HFY K + Sbjct: 117 WAKENHFCGLMLETQDINISACHFYAKHHF 146 Score = 40.3 bits (94), Expect = 2e-06 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 17/136 (12%) Query: 150 KIMNKDNKKIEVKQLEFPTFKVEI---------QKWLNFHINWQNDIDYIEKTNHTFYGA 200 K NK N+ V P F+ + + + + + D+ Y+E+ + Sbjct: 11 KDFNKPNEPFVVFGRMIPAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLY 70 Query: 201 YVDSDIKGSVCV----NEQGKISFIFIDKDYRNIGVGTKLLQVASE---ELKLSSLSIGF 253 Y++++ G + + N I I + KDYR GVGT LL A E E L + Sbjct: 71 YLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLET 130 Query: 254 PNNNLLK-GFLKKSGF 268 + N+ F K F Sbjct: 131 QDINISACHFYAKHHF 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.9 bits (186), Expect = 1e-18 Identities = 66/261 (25%), Positives = 107/261 (40%), Gaps = 28/261 (10%) Query: 1 MSITTLKDTRIVIIGGSSGIGLVTVKQALEQGAHVIIAGRSEEKLK--ISRELINNNHLQ 58 M+ ++ I G + GIG + QGAH+ + EKL+ +S H + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 59 TYVLD----NQNKEQLQDFFKTVGNFDHLFTPGASYTLGPI-TATEEIAESSFIGKFWPQ 113 + D E + +G D L G I + ++E E++F Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 114 YYAVKYAIPFLSN--SGSIVLMSGAFSQRPLKGAPAYGACNGAIESLGKALAVELAP--I 169 + A + ++ + SGSIV + + P AY + A K L +ELA I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 170 RVNVVSPGTIRRENEQS--------EKRLAAY-EDYKS---LSLVQRPGYNDEIAHTVLY 217 R N+VSPG+ + + S E+ + E +K+ L + +P +IA VL+ Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPS---DIADAVLF 237 Query: 218 LM--QNGFTTGNVLFPDGGYT 236 L+ Q G T + L DGG T Sbjct: 238 LVSGQAGHITMHNLCVDGGAT 258
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 78.5 bits (193), Expect = 2e-20 Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 2/170 (1%) Query: 2 RKGELTKRMILDRSSALFNVKGYSGSSISDIMRETGLEKGGIYRHFKNKDDLAVQAFQHA 61 ++ + T++ ILD + LF+ +G S +S+ +I + G+ +G IY HFK+K DL + ++ + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 62 TSQMGVRYVEEIKKASNTLDKL--KTFISVFTSLIHNDPLPGGCPIMNVTLEADDSHPLM 119 S +G +E K + + I V S + + I+ E ++ Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 120 AEQAQIAMNQLLGIIEKIITYGIEQGELKPDTQAKQFAIIWISSLEGALA 169 + + + IE+ + + IE L D ++ AII + G + Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.4 bits (58), Expect = 0.047 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 7/97 (7%) Query: 43 ERTISRINNLDGGFYKIFVNTNLVGAICISRKEEASKFWISPMFIIPNYQGNGIAQKVLI 102 + +S + + ++ N +G I I R I + + +Y+ G+ +L Sbjct: 54 DMDVSYVEEEGKAAFLYYLENNCIGRIKI-RSNWNGYALIEDIAVAKDYRKKGVGTALLH 112 Query: 103 LIEEMFPEITNWELATILEEERN----CFLYEKMGYI 135 E E N +LE + C Y K +I Sbjct: 113 KAIEWAKE--NHFCGLMLETQDINISACHFYAKHHFI 147
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 27.4 bits (61), Expect = 0.037 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 8/39 (20%) Query: 62 TIPIRVDTLHSDLDIVMEVHNYD--------FFEQEIRS 92 T P V+TL LD++M H+ F E IR Sbjct: 303 TRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRK 341
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.004 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 27 IYDIATKEEMRGKGFGSTMFNFLLQEAKQLKNTYCVLQASPD---GINIYKKSGFQVVG 82 I DIA ++ R KG G+ + + ++ AK+ +L+ + Y K F + Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.2 bits (94), Expect = 5e-06 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 26/129 (20%) Query: 1 MKVLVTGANGNLGSKIVEYLLTRLSIEEIIVGVRDD---------KSEKALSYKEQGLEV 51 MK LVTGA G +G + + LL +VG+ D+ K + + G + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEA---GHQVVGI-DNLNDYYDVSLKQARLELLAQPGFQF 56 Query: 52 RVTDFENQETLFSAFKDVD-------------RLFIMSTFGDFDTVIRQHTNAVEAAKAT 98 D ++E + F R + + D+ + N +E + Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 99 GVKQIIYPS 107 ++ ++Y S Sbjct: 117 KIQHLLYAS 125
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 7e-07 Identities = 69/392 (17%), Positives = 140/392 (35%), Gaps = 28/392 (7%) Query: 13 LLLSGVGIANLGAWIYLIALNVLVYNMGGSALAVA---TLYVIKPLATLFTNAWSGSMID 69 ++LS V + +G + + L L+ ++ S A L + L G++ D Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 70 RLNKRKLMIHLDIYRVVFIAILPLVPSLWIVYLLVFFISMASAIYEPTAMTYMTKLIPVE 129 R +R +++ V AI+ P LW++Y+ + A A Y+ + + Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGD 127 Query: 130 QRQRFNSLRSLIGSGAFLIGPAVAGILLITGTPE---FAIYMNAIAFLLSGFITLLLPNL 186 +R R S + GP + G++ A +N + FL F LLP Sbjct: 128 ERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF---LLPES 184 Query: 187 DKKDDSNTSNDKFSLTVLKKDWNIVLNFSEKSMYIVCVYFLFQGMMVLATAIDSLELSFA 246 K + + + + + + +F M ++ +L + F Sbjct: 185 HKGERRPLRREALNPLA-----SFRWARGMTVVAA--LMAVFFIMQLVGQVPAALWVIFG 237 Query: 247 KEVLLLTDSEYGFLVSIAGAGFILGAITNTILSKKLAPSF----LIGIGSLFIAIGYLIY 302 ++ + G S+A G IL ++ +++ +A + +G + GY++ Sbjct: 238 EDRFHWDATTIGI--SLAAFG-ILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL 294 Query: 303 AFSSEFLIAAIGFFILSFSMAYANTGFYTFYQNNVPVHMMGRIGSIYGLIIAVLTIFITI 362 AF++ +A +L+ V G++ + ++ +I + Sbjct: 295 AFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 363 LFGV---ATQFTSMQLVVIVGVLVMLLITIIL 391 LF A+ T I G + LL L Sbjct: 354 LFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 9e-22 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 1/125 (0%) Query: 3 HILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALEKNYDLILLDLMLPGLNGLE 62 IL+ +D+ ++ L L GY V I + + DL++ D+++P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VCRRLRAT-KSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121 + R++ P+++++A+++ M + + GA DYLPKPF + EL+ + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 TEQKH 126 K Sbjct: 125 RPSKL 129
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.040 Identities = 7/18 (38%), Positives = 12/18 (66%) Query: 35 VLIAGRSGSGKSTLAHCI 52 ++I G SG+GK +A + Sbjct: 163 LMITGESGTGKELVARAL 180
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 1e-04 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 18/102 (17%) Query: 474 QVFI-NILQNSIEAMLDGGKISIHIKEIHKKGVIISVIDEGIGIPEERIKRLGEPFYSTK 532 Q + N +++ I + GGKI + + + V + V + G + Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDNGT-VTLEVENTGSLALKN------------T 307 Query: 533 EKGTGIGLMLSY---KIIEGHQGTISIMSEVGVGTTVTIYLP 571 ++ TG GL +++ G + I + + G + +P Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.026 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 11/84 (13%) Query: 61 IIAENGALIYTDKKMMKRYPIQNTQALEIIEYLEENDLYYQLYTNKGVYVPDYGVESVRN 120 I ++G +I D +K+ ++ Q Y+ ND Y ++G + + N Sbjct: 930 IFDKSGRIITPDS--LKKA-LEYQQRNNKASYVYGNDA--LAYGSQG------DLNPLIN 978 Query: 121 EIEYVKNSKENFNLKELETIAALY 144 EI + ++ +F++KE T A+L Sbjct: 979 EISKIISAAGSFDVKEERTAASLL 1002
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 4e-04 Identities = 45/302 (14%), Positives = 105/302 (34%), Gaps = 25/302 (8%) Query: 70 FIFSFIGGTFADRWKPKKTMIWCETLSSISVFAVLITLMFGTWKIVFFVTLISAILSQFS 129 F + + G +DR+ + ++ +++ + T +V I I++ + Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYA------IMATAP-FLWVLYIGRIVAGIT 109 Query: 130 QPSG---MKLFKQHLSTEQIQLAMSLYQTIFAIFMVLGPIIGTF---IFHSFGIYISIII 183 +G ++ F MV GP++G + + + Sbjct: 110 GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAAL 169 Query: 184 TGIAFLLAAAVLLFLPKDLENDNEKKEITLLQEMLDGIKYVKKKKALTLLGLCFMAAGLG 243 G+ FL LL E ++E L ++ + + L F L Sbjct: 170 NGLNFLT-GCFLLPESHKGERRPLRREAL---NPLASFRWARGMTVVAALMAVFFIMQLV 225 Query: 244 IGLIQPLGIFIVTEQLGLSKESLQWLLTVNGAGMIVGGALAM-VFAKNVAPQKMLIIGML 302 + L + ++ ++ L G + A+ A + ++ L++GM+ Sbjct: 226 GQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMI 285 Query: 303 GQAIGIGIIGYSTNLWVTLTAQLF---SGLALPCIQIGINTLIIQNSDTDFIGRVNGILS 359 G ++ ++T W+ + G+ +P +Q ++ + D + G++ G L+ Sbjct: 286 ADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQ----AMLSRQVDEERQGQLQGSLA 341 Query: 360 PL 361 L Sbjct: 342 AL 343 Score = 31.3 bits (71), Expect = 0.008 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 6/182 (3%) Query: 224 VKKKKALTLLGLCFMAAGLGIGLIQPLGIFIVTEQL--GLSKESLQWLLTVNGAGMIVGG 281 +K + L ++ +GIGLI P+ ++ + + LL + Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 282 ALAMVFAKNVAPQKMLIIGMLGQAIGIGIIGYSTNLWVTLTAQLFSGLALPCIQIGINTL 341 + + + +L++ + G A+ I+ + LWV ++ +G+ Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAY 119 Query: 342 IIQNSDTDFIGRVNGILSPLFTGSMVVTMSIAGSLKEMFSLSTMYEGTAL---LFIIGLL 398 I +D D R G +S F MV + G + + + AL F+ G Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 399 FI 400 + Sbjct: 180 LL 181 Score = 30.6 bits (69), Expect = 0.012 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 60 MISVAEFAPIFIFSFIGGTFADRWKPKKTMIWCETLSSISVFAVLITLMFGTWKIVFFVT 119 ++ + I G A R ++ ++ I L F T + F Sbjct: 251 SLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG----YILLAFATRGWMAFPI 306 Query: 120 LISAILSQFSQPSGMKLFKQHLSTEQIQLAMSLYQTIFAIFMVLGPIIGTFIF 172 ++ P+ + + + E+ + ++ ++GP++ T I+ Sbjct: 307 MVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.9 bits (114), Expect = 4e-08 Identities = 66/362 (18%), Positives = 128/362 (35%), Gaps = 22/362 (6%) Query: 17 MFLIITTTGFARMAYGII---LPFMQEGLHLSTAQAGMLGTILFLGYLLTVGTS---GIL 70 + +I++T + G+I LP + L S G +L L L+ + G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 71 TIRFGAKSVLLIGSWLVVISLIGLAFVSSFWIASICMLCAGAGSALVYTPLMSITVGWFP 130 + RFG + VLL+ + +A W+ I + AG A I Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDG 126 Query: 131 EKRGTAMGLLLSGAGIGMLFSGIIVPYIVRAFPEYSWRGSWLLFGVITCIVVFVASIVLK 190 ++R G + + G GM + P + +S + + + +L Sbjct: 127 DERARHFGFMSACFGFGM----VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 191 NPEVTEDEGERNN-----KSFLWKTKELYIIAWMYFIVGVVYLIPNLYQTSFMI--NNGI 243 E R SF W + ++A + + ++ L+ + ++I + Sbjct: 183 ESHKGERRPLRREALNPLASFRWARG-MTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 244 AASISGTVYSIAGMFSIVGAPVWGLISDRVGIKKTLCIALLLAVIGDMIPIIFGHTIG-- 301 + S+A F I+ + +I+ V + AL+L +I D I Sbjct: 242 HWDATTIGISLAA-FGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300 Query: 302 -FIMSAIIWGSSLGGILLLIQVAASKQVSPKYVSMAISFISVFYAVGQMIGPGLAGWIIG 360 ++ +S G + +Q S+QV + ++ ++ ++GP L I Sbjct: 301 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 361 ES 362 S Sbjct: 361 AS 362
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 5e-27 Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 3/188 (1%) Query: 14 KIAIITGASSGFGLLTTLELAKKDYFVIATMRNLEKQIDLISQATKLDLQQNIKVQQLDV 73 KIA ITGA+ G G LA + + A N EK ++S + DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA--EAFPADV 66 Query: 74 TDQGSIHNF-QLFLNEINRIDILINNAGYANGGFIEEIPVEDYRKQFETNLFGAISITQL 132 D +I E+ IDIL+N AG G I + E++ F N G + ++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 133 VLPYMRKQKSGKIINISSISGKVGFPGLSPYVSSKYALEGWSESLRLEVKPFGIDVALLE 192 V YM ++SG I+ + S V ++ Y SSK A +++ L LE+ + I ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 193 PGSYNTNI 200 PGS T++ Sbjct: 187 PGSTETDM 194
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.1 bits (70), Expect = 0.001 Identities = 15/46 (32%), Positives = 24/46 (52%) Query: 43 IAIGVWEENELIGFARVVTDGVFRAYIEDVVVHESVRNKGIGEKML 88 A + EN IG ++ ++ A IED+ V + R KG+G +L Sbjct: 66 AAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALL 111
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 2e-04 Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 38/182 (20%) Query: 282 IIKQTDQISNLIEELLRFSKLERDILQKEEFPIEPLVQSI--IDKHKIELESKEL--KLQ 337 I++ + ++ L S+L R L+ L + +D + ++L S + +LQ Sbjct: 186 ILEDPTKAREMLTSL---SELMRYSLRYSNARQVSLADELTVVDSY-LQLASIQFEDRLQ 241 Query: 338 VNYSVGDTIVYADLNKMRMVFQNLISNAIKYTTNQ-----NIKIILEEKNGIVYFQIQN- 391 + I+ + M + Q L+ N IK+ Q I + + NG V +++N Sbjct: 242 FENQINPAIMDVQVPPM--LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299 Query: 392 -GIAAEGIKEIDKIWEPFYVLESSRSKEKSGTGLGLAIVKSILE-RHGFEYGVSVEDGEI 449 +A + KE TG GL V+ L+ +G E + + + + Sbjct: 300 GSLALKNTKE--------------------STGTGLQNVRERLQMLYGTEAQIKLSEKQG 339 Query: 450 QF 451 + Sbjct: 340 KV 341
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 8e-23 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 2 KVLIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKSSGIT 61 +L+ADD+ + +L + G++V + + + DL + D +MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VCQEIKK-NSSVKVLMLTAKSESEDELAALQTGADEYVKKPFHPGVLITRAKKLVQHE 118 + IKK + VL+++A++ + A + GA +Y+ KPF LI + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.4 bits (63), Expect = 0.008 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 38 TGECLYGIFREDTLIGIGGLNQDPYTKNNKIGRLRRFYIAKDYRRKGLGKLLLGRILSDA 97 G+ + + E+ IG + + N + +AKDYR+KG+G LL + + A Sbjct: 63 EGKAAFLYYLENNCIGRIKIRSNW----NGYALIEDIAVAKDYRKKGVGTALLHKAIEWA 118 Query: 98 K-IYFTIVVLHTDTEQ--GDKFYTSSGFTKG 125 K +F ++L T FY F G Sbjct: 119 KENHFCGLMLETQDINISACHFYAKHHFIIG 149
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 30.4 bits (68), Expect = 0.020 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 15/130 (11%) Query: 16 LYPQEQNFTFSIETIERLKIEYKATKDSVILSQLIQAIEKAEYYLYCRAAEDEKHPEN-- 73 + P +Q FT+ ++ E+ Y+ K S + ++ +E Y + E P + Sbjct: 260 ILPMDQEFTYRVKNREQ---AYRINKKSGLNEEINNTDLISEKYYVLKKGEKPYDPFDRS 316 Query: 74 -------TLLSVKVNQLKKEVQLLIESSKG---QSVNTNHSSIKLIENELKAWEDMYTQL 123 + V N+L K QLL S + + + KL+ N L A+ M L Sbjct: 317 HLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAKLLYNNLDAFGIMDYTL 376 Query: 124 RNKIEVIHDK 133 K+E HD Sbjct: 377 TGKVEDNHDD 386
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.002 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 9/108 (8%) Query: 31 PDFDSTPKETISETHLKEFNVRSFYSYIDGKLVSYAGVVRKTIHHNGQIFNIAGLSCVAT 90 P F + + ++++E +F Y++ + + R + I +IA Sbjct: 45 PYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKI-RSNWNGYALIEDIA------V 97 Query: 91 DPDYHGQGLGLQTVAAATEWIEKQ--CNIDFGIFTCKPSLAHFYNRAG 136 DY +G+G + A EW ++ C + S HFY + Sbjct: 98 AKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHH 145
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.010 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 28/164 (17%) Query: 26 SREIREKKESKETESKKEDKVIGIEKESEKTGLTKENKAMGIEKESKETESKKEDKVIGI 85 E + T S+ + V K+ KT E A TE+ +++ + Sbjct: 1020 VDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDA---------TETTAQNREVAK 1070 Query: 86 EKESEKTGLTKENKAMGIEKESKETESKKEDKVIGIEKESEKTGLTKENKAIGLEEEEVK 145 E +S T+ N+ E+KET++ + + A +EE+ K Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTE-----------------TKETATVEKEEKAK 1113 Query: 146 IESNKESEETEPAKEN--KVIGLEKVEVANESEKKSEETESKRE 187 +E+ K E + + K E V+ E ++++ T + +E Sbjct: 1114 VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 27.7 bits (61), Expect = 0.040 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 14/91 (15%) Query: 1 MMKVYMKVLIFFLTLTCVAALTAC----TNAEEKKQTNSTSENSTEKKSDTSEKSKK--- 53 M K+ + + F +T VA+L A T+ E TN S T+ K +TS KSKK Sbjct: 1 MNKLIRRAVTIF-AVTSVASLFASGVLETSMAESLSTNVISLADTKAKDNTSHKSKKARK 59 Query: 54 ---NEETAPKKENEPVEKPKGQESVKPSTES 81 E +KE PV + ++ P +S Sbjct: 60 NHSKETPVDRKEVAPVHE---SKATGPKQDS 87
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 33.5 bits (76), Expect = 4e-05 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 6 IVGGILGWFASLITGKDVPGGVIG-NIIAGIVGSWLGTALLGKFGPVIG 53 V ++ SL+ G G+ G I+ GI+ S++ L V+G Sbjct: 475 GVSYVVALLFSLLAG--TTLGIWGIAIVTGILCSYIDKNKLNTINEVLG 521
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.1 bits (112), Expect = 7e-08 Identities = 66/342 (19%), Positives = 118/342 (34%), Gaps = 11/342 (3%) Query: 1 MWRNKNVWIVLIGEFIAGLGLWLGILGNLEFMQKYVPSDFMKS---VILFIGLLAGVLVG 57 M N+ + ++L + +G+ L + ++ V S+ + + ++L + L Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 58 PMAGRVIDQYEKKKVLLYAGFGRVISVIFMFFAIQYESIAFMIAFMVALQISAAFYFPAL 117 P+ G + D++ ++ VLL + G + M A + I +VA A Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVL--YIGRIVAGITGATGAVAG- 117 Query: 118 QSVIPLIVREHELLQMNGVHMNVGTIARIAGTSLGGILLVVMSLQYMYAFSMAAYALLFL 177 + I I E + G +AG LGG L+ S + + A L FL Sbjct: 118 -AYIADITDGDERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAALNGLNFL 175 Query: 178 STFFLQFEDKKSTTSSKESAKDNSFMEVFRILKGIPIAFTALILSIIPLLFIAGFNLMVI 237 + FL E K N +A + I+ L+ L VI Sbjct: 176 TGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI 235 Query: 238 -NISEMQHDPTIKGFIYTIEGVAFMLG-AFVIKRLSDHFKPEKLLYFFAVCTAFAHLSLF 295 D T G G+ L A + ++ + L + ++ L Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA 295 Query: 296 FSDIKWMALTSFGLFGFSVGCFFPIMSTIFQTKVEKSYHGRL 337 F+ WMA L G P + + +V++ G+L Sbjct: 296 FATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQVDEERQGQL 336 Score = 28.6 bits (64), Expect = 0.044 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 4/108 (3%) Query: 48 IGLLAGVLVGPMAGRVIDQYEKKKVLLYAGFGRVISVIFMFFAIQYESIAFMIAFMVALQ 107 G+L + + G V + +++ L+ I + FA + +M ++ L Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG----WMAFPIMVLL 310 Query: 108 ISAAFYFPALQSVIPLIVREHELLQMNGVHMNVGTIARIAGTSLGGIL 155 S PALQ+++ V E Q+ G + ++ I G L + Sbjct: 311 ASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.2 bits (63), Expect = 0.033 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 13/109 (11%) Query: 19 VVKDRDYVVFYGKIGTAGSVKAKECETEEECIKEANKLIASKRKKGYTDPIL-GEDYIKE 77 VVK Y +G ++ A + ++EA L R++G+ PIL E + Sbjct: 33 VVKANAY--GHGIERIWSAIGATDG-FALLNLEEAITL----RERGWKGPILMLEGFFHA 85 Query: 78 KTITEEEFWELLARAKSKGEDQEEQIEWLTSHLAKRTVHEIVAFDTHMH 126 + + + L S Q++ L + K + + ++ M+ Sbjct: 86 QDLEIYDQHRLTTCVHS-----NWQLKALQNARLKAPLDIYLKVNSGMN 129
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.3 bits (71), Expect = 0.005 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 1 MKILILGGTRFLGRAFVEEALNRGHEV 27 MK L+ G F+G + L GH+V Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQV 27
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 6e-06 Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 61 SQTHKDEAYVHFIGVNPKFRRKGIASTLYSYFFDSARANNRKVVKAITSSVNKKSIRFHQ 120 A + I V +R+KG+ + L + A+ N+ + T +N + F+ Sbjct: 83 RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYA 142 Query: 121 EIGFKIEAGD 130 + F I A D Sbjct: 143 KHHFIIGAVD 152
>PF06580#Sensor histidine kinase Length = 349 Score = 32.5 bits (74), Expect = 0.004 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 21/110 (19%) Query: 469 QLHVHKQLSKIEVVANPHRIEQVVTNFITNAIRYTPEHEDIIISTIEENKRVKVCVENKG 528 + ++ + ++V P ++ +V N I + I P+ I++ ++N V + VEN G Sbjct: 243 ENQINPAIMDVQVP--PMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 529 AHIAPEHVEKIWDRFYRGDTSRQRSKGGTGLGLA-ISKNILELHGAEYGV 577 + +K TG GL + + + L+G E + Sbjct: 301 SLALKN------------------TKESTGTGLQNVRERLQMLYGTEAQI 332
>cloacin#Cloacin signature. Length = 551 Score = 46.2 bits (109), Expect = 1e-07 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 21/198 (10%) Query: 18 AGANSAHAEVTDATPQQSTGDRLAEIKQHKQELDAK--LQQHKENVDQTLNELNQVKENV 75 +G N+ + V+D R E + +QE DA ++ + N ++ ELNQ E+V Sbjct: 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDV 337 Query: 76 DTKVNELHERKQVADEKIGEIKQHKQELDAKLQQDKQIAEDKIAEIKEHKKQVDEKVAEI 135 ++ +Q ++ K ELDA +K +A D IAEIK+ + + +A Sbjct: 338 AR-----NQERQAKAVQV--YNSRKSELDAA---NKTLA-DAIAEIKQFNRFAHDPMAGG 386 Query: 136 KEHKQTVDEKVNEIKEHKQTVDEKVNEIKQHKENIDAKVNELKEVKKQVDDKLAELKKAK 195 Q K + + + K + DA ++ E +K+ +DK K Sbjct: 387 HRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDK-------K 439 Query: 196 QTAEDKLAEIKENKPNTG 213 ++AE+ L + ++NKP G Sbjct: 440 RSAENNLND-EKNKPRKG 456
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 4e-05 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 22/102 (21%) Query: 359 NIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEKEEMDRIFDRFYKVDTARARN 418 N + I GG I + + + + + G K Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT------------------ 307 Query: 419 IEGSGLGLSIVQKIVELHNGN---VSVYSTKGEGTTVRVELP 457 E +G GL V++ +++ G + + +G V +P Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 4e-19 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 2 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 61 IL+ADDD IR +L+ L + G+ V + + + L + D++MP + + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 TLCEEIRK-YHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 L I+K D+PV++++A++ + K G DY+ KPF+ E+I + L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 75.2 bits (185), Expect = 5e-17 Identities = 68/358 (18%), Positives = 124/358 (34%), Gaps = 21/358 (5%) Query: 16 FSSLFL-FLTFYMLMTTLPVYVIDSLKGK--PEEIGLVATVFLISSVLCRPFTGKWLDDL 72 S++ L + ++M LP + D + G++ ++ + C P G D Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF 70 Query: 73 GRKKILFISLSLFLAATVMYFGTQSLFLLLALRFLHGIGFGMATTATGTIVTDVAPAHRR 132 GR+ +L +SL+ + L++L R + GI G G + D+ R Sbjct: 71 GRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDER 129 Query: 133 GEALAYYGVFMSLPMVIGPFLGLTIISHFSFTVLFIVCSVFSLLAFLLG-LLVNIPHEAP 191 + MV GP LG ++ FS F + + L FL G L+ H+ Sbjct: 130 ARHFGFMSACFGFGMVAGPVLG-GLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 192 VNKQKRE------KMKWKELIEPSSIPIALTGFVLAFSYSGILSFIPIYAKELGLSEIA- 244 +RE +W + + +A+ + ++ Sbjct: 189 RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI 248 Query: 245 ----SYFFILYALVVVISRPFTGKIFDRFGENVLIYPAIIIFTIGMFILSQAQTSFWFLG 300 + F IL++L + TG + R GE + +I G +IL T W Sbjct: 249 GISLAAFGILHSLAQAM---ITGPVAARLGERRALMLGMIADGTG-YILLAFATRGWMAF 304 Query: 301 AGMLIGLGYGTLIPSFQTIAISAAPNHRRGSATATYYSFFDSGIGFGSFILGIVAAKS 358 M++ G +P+ Q + R+G + + G + + A S Sbjct: 305 PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 30.8 bits (69), Expect = 0.006 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 12/63 (19%) Query: 141 SVKSFFDKFRSIFKQGEFFQEQFITMCPIKNFFNDDLGLSVY--------YPVLNDTEME 192 V + D+ ++ F+ G +E+ + D+LG +V + + Sbjct: 54 LVYRYLDQEKNTFQLGGQARERL----SLIGNKLDELGHTVMRFEQAIAASLCMGAVLVA 109 Query: 193 HVD 195 HV+ Sbjct: 110 HVN 112
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.038 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Query: 92 NKDTLYGIGSVSKMYATAAVMKLVDEGKVDLDAPVVHYVPD 132 D + + S K+ AV+ VD G L+ +HY Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLER-KIHYRQQ 96
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.5 bits (69), Expect = 0.010 Identities = 12/56 (21%), Positives = 18/56 (32%) Query: 75 GGKTWSYAAGVADLSSKQPMKTDFRFRIGSVTKTFTATVVLQLVGENRLNLDDYIE 130 G+ +A + + D RF + S K VL V L+ I Sbjct: 37 SGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIH 92
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 65.8 bits (160), Expect = 5e-15 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 17/196 (8%) Query: 3 VLITGGNRGLGLQLVKVFHENGHIV----YRLVRTEVAVTQLKKM-FSSRCFPILADLSI 57 ITG +G+G + + G + Y + E V+ LK + FP AD+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP--ADVRD 68 Query: 58 DESTEQIKNQLEEYTKYIDLVINNAGITGKETEISRTNSEELMELFNVHCLGVIRAVKGT 117 + ++I ++E ID+++N AG+ + I + EE F+V+ GV A + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 118 YVALTKSNQPRIINVSSRLGSLHKMANKEFPQGKFSYSYRIAKAAQNMLTLCLQQEFENK 177 + I+ V S + + + +Y +KAA M T CL E Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMA---------AYASSKAAAVMFTKCLGLELAEY 178 Query: 178 GIRVTAIHPGKLKTDI 193 IR + PG +TD+ Sbjct: 179 NIRCNIVSPGSTETDM 194
>cloacin#Cloacin signature. Length = 551 Score = 34.7 bits (79), Expect = 8e-04 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 1/81 (1%) Query: 293 GNNGRGSQGNNGNGQGNNGRGSQGNNGNQQGNNGHQQENTGRESQGNNGNGQGNNGRESQ 352 G +GRG + GN G G ++G + G +G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 353 GNNGNGQGNNGRGSQGNNGNQ 373 GN G GN+G GS Sbjct: 63 GNGGGN-GNSGGGSGTGGNLS 82 Score = 34.3 bits (78), Expect = 0.001 Identities = 24/87 (27%), Positives = 30/87 (34%), Gaps = 9/87 (10%) Query: 280 NGRGLQGNNGNGQGNNGRGSQGNNGNGQGNNGRGSQGNNGNQQGNNGHQQENTGRESQGN 339 +GRG + GN G G G ++G G N G +G G GN Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 340 NGNGQGNNGRESQGNNGNGQGNNGRGS 366 G GN+G G G G S Sbjct: 65 GGGN---------GNSGGGSGTGGNLS 82 Score = 33.9 bits (77), Expect = 0.001 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%) Query: 360 GNNGRGSQGNNGNQQGNNGRESQGNNGNGQGNNGRE-SQGNNGNGQGNNGRESQGNNGNQ 418 G +GRG + GN G G ++G S NN G G+ G+ + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGS------GSGIHW 56 Query: 419 QGNNGRGSQGNNGNQQENNGRGSQGNN 445 G +G G+ G NGN G G+ GN Sbjct: 57 GGGSGHGNGGGNGNS--GGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.001 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 308 GNNGRGSQGNNGNQQGNNGHQQENTGRESQGNNGNGQGNNGRESQGNNGNGQGNNGRGSQ 367 G +GRG + GN G ++G+G + G +G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 368 GNNGNQQGNNGRESQGNNGNGQ 389 GN G N G GN Sbjct: 63 GNGGG--NGNSGGGSGTGGNLS 82 Score = 33.5 bits (76), Expect = 0.002 Identities = 19/80 (23%), Positives = 29/80 (36%) Query: 338 GNNGNGQGNNGRESQGNNGNGQGNNGRGSQGNNGNQQGNNGRESQGNNGNGQGNNGRESQ 397 G +G G + GN G G G ++G+ + G +G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 398 GNNGNGQGNNGRESQGNNGN 417 GN G + G G N + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 32.0 bits (72), Expect = 0.005 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 353 GNNGNGQGNNGRGSQGNNGNQQGNNGRESQGNNGNGQGNNGRESQGNNGNGQGNNGRESQ 412 G +G G + GN G ++G+G + G +G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 413 GNNGNQQGNNGRGSQGNNGNQQ 434 GN G N G G GN Sbjct: 63 GNGGG--NGNSGGGSGTGGNLS 82 Score = 29.3 bits (65), Expect = 0.032 Identities = 17/80 (21%), Positives = 27/80 (33%) Query: 323 GNNGHQQENTGRESQGNNGNGQGNNGRESQGNNGNGQGNNGRGSQGNNGNQQGNNGRESQ 382 G +G + GN G G ++G+G + G +G+ G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 383 GNNGNGQGNNGRESQGNNGN 402 GN G + G G N + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.017 Identities = 10/36 (27%), Positives = 20/36 (55%) Query: 156 ALDLLANRKENKFTVKKICEVTGVSRTVLYERAKEK 191 AL L + + + ++ +I + GV+R +Y K+K Sbjct: 20 ALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 5e-07 Identities = 61/343 (17%), Positives = 115/343 (33%), Gaps = 69/343 (20%) Query: 104 FIIFTIISVITIMFRYLSPTYFKEKKILLSILLILICTTSL-SICGIVTQINTG------ 156 I + V+T +R K + I+L ++ + + V + Sbjct: 46 IAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFI 105 Query: 157 GKIDSTLIEFLFNYIIINIFTVLLS---VYLIEGMIEKYKIKERMQ-RAEKFYIASELAA 212 L II N+ V +Y + YK E Q + ++L A Sbjct: 106 NTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMA 165 Query: 213 SIA----HEIHNPLTTVRGFTQLLNEDESAKMSQD--KYLEIMLLEMQQIQST------- 259 A H + N L +R L + ++ +M + + L Q + Sbjct: 166 LKAQINPHFMFNALNNIRALI-LEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTV 224 Query: 260 INNYLSLTKPQ--NIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYINANTE 317 +++YL L Q + ++ E IN + V+ + P+ + VE Sbjct: 225 VDSYLQLASIQFEDRLQFENQINPAIMDVQ--VPPMLVQTLVE----------------- 265 Query: 318 KLKICLTNIIQNGIEAMKNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIKRIALPFYST 377 N I++GI + GG + + K G + +++ +TG Sbjct: 266 -------NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA------------LKN 306 Query: 378 TEKGTGLGTMIAYSIIKELNGD---IEIESELGKGTHFSITIP 417 T++ TG G ++ L G I++ + GK + IP Sbjct: 307 TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 2e-04 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 21/99 (21%) Query: 351 NILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDDQKRIFDRFFKADRSHSRK 410 N +++ I G I + +D VT+ + +TG + L + K Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKE--------------- 309 Query: 411 YDGSGMGLAIVKQIVSLHQGD---IRVKSEPGQGTTFIV 446 +G GL V++ + + G I++ + G+ ++ Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 2e-24 Identities = 42/120 (35%), Positives = 63/120 (52%) Query: 2 PTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGW 61 TILVADDDA IR ++ L G+ ++ + + DLVV D++MP + + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 121 L +++A PDLP+L+++A+ +K E G DYL KPFD EL + L K Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 70.6 bits (173), Expect = 3e-16 Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 42/220 (19%) Query: 3 KILVTGAAGKIGQDVTRFLDKQGN-----------YQLRLADINLSALETFKDTNHEIIY 51 K LVTGAAG IG V++ L + G+ Y + L L L + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA---QPGFQFHK 58 Query: 52 LDVSDLAACQEF--TKGIDIVIHLAG---------NPSPNADFYGSLLENHIKGTYNIFR 100 +D++D + + + V NP + ++++ G NI Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENP-------HAYADSNLTGFLNILE 111 Query: 101 AASDNNVSKVIVASSAQTIEGYPLDYQPHAYSPTRPKNMYGVSKCFAEAVASYFAYEEGL 160 N + ++ ASS+ S P ++Y +K E +A +++ GL Sbjct: 112 GCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 161 QSLAIRIGAYDDYNPYGKPLTARDMSAYLSPEDFMDLLLK 200 + +R + Y P+G+P DM+ + F +L+ Sbjct: 172 PATGLRF--FTVYGPWGRP----DMALFK----FTKAMLE 201
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.013 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 39 LESGTTRTVTT---NSIFNSCSISKFITSMLVLTLSDQGIVHLDEDVN---DRLTSWN 90 ++ + RT+T + F S K + VL D G L+ ++ L ++ Sbjct: 45 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYS 102
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 78.4 bits (193), Expect = 7e-18 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 1/181 (0%) Query: 9 LWLMIILVAFPQISETIYTPSLPDISKALHVSNNEVQLTLSVYFAGFALGVFFIGWLSDI 68 L + IL F ++E + SLPDI+ + + + F++G G LSD Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 69 IGRRPAMLFGIVVYGAGSFLCYIANS-IEFLLFSRFIQAFGASAGSVVTQTILRESVEGH 127 +G + +LFGI++ GS + ++ +S L+ +RFIQ GA+A + ++ + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 128 KRHVMFAQISAVIAFTPAIGPLIGGFLDQMFGFKIVFLSLVVMSVGILLYTFVSLPETKT 187 R F I +++A +GP IGG + + + L ++ + + + E + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRI 195 Query: 188 D 188 Sbjct: 196 K 196
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 40.5 bits (95), Expect = 2e-05 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Query: 4 DVVLINGEVITVDQKNTVVEAVAIKNNHIVVVGSN------QEVKSFIGENTDVIDLQGK 57 D V+ N + +D V + +K+ I +G V +G T+VI +GK Sbjct: 69 DTVITN--ALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGK 126 Query: 58 TILPGFIDSHLHIIS 72 + G +DSH+H I Sbjct: 127 IVTAGGMDSHIHFIC 141 Score = 36.3 bits (84), Expect = 3e-04 Identities = 22/57 (38%), Positives = 28/57 (49%) Query: 459 EVGANQSISVMEAIKLYTWNGAYASFEEEIKGSIEAGKLADLVILNDSILSVNPNQI 515 E G N + V I YT N A A GS+E GK ADLV+ N + V P+ + Sbjct: 393 ETGDNDNFRVKRYIAKYTINPAIAHGLSHEIGSLEVGKRADLVLWNPAFFGVKPDMV 449
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 44.3 bits (105), Expect = 1e-06 Identities = 19/31 (61%), Positives = 22/31 (70%) Query: 517 IDAYTIKPAKALGLDNVTGSIEVGKSADMVL 547 I YTI PA A GL + GS+EVGK AD+VL Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVL 436
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 54/324 (16%), Positives = 104/324 (32%), Gaps = 10/324 (3%) Query: 55 GLLISAVNIGPLFCMLFAGRLLDRYNERILIGVSAVLLGGALLLAHMARG-FIGLLFVLL 113 G+L++ + C G L DR+ R ++ VS L G A+ A MA F+ +L++ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVS--LAGAAVDYAIMATAPFLWVLYIGR 103 Query: 114 LIGTFYSVSQPGGSKVILKWFPKEMRGLAMGIRQAGIPIGGALAGVTIPLLTLKFSLSYT 173 ++ + I + R G A G +AG + L FS Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGF-GMVAGPVLGGLMGGFSPHAP 162 Query: 174 INVIATICIIGGLLFFIFYKESYVREHTSREDVRLSFWMQLKKVICKKELYPIFITGICM 233 A + + L ES+ E L+ + + + M Sbjct: 163 FFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIM 222 Query: 234 SSLQMILVGHFIKFLVIEKSITPIVAGKVFSVMLVAGMVGRIILATISDTYYKGDRRTPL 293 + + ++ F G + + + + ++ G+RR + Sbjct: 223 QLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARL-GERRALM 281 Query: 294 LITVCISFCLILVVVMSINTMTLEALFVMSGLLGFFAIGWFSLFMVEVAESASEELVGVT 353 L + IL+ + M + +++ G ++ +V E +L G Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQVDEERQGQLQGSL 340 Query: 354 VSFALTLNQIAIIFAPALFGYIVD 377 + + I P LF I Sbjct: 341 AAL----TSLTSIVGPLLFTAIYA 360
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 46.6 bits (110), Expect = 1e-06 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 38/165 (23%) Query: 623 YTVTIENTGNVLATNVIFQDPTPIGTTFIPNSVTVDGVSQPGANPATGFTVANISPGGSR 682 Y + I N G A NV+ ++P P DG + FT+ ++ PG R Sbjct: 229 YKINIVNQGTATARNVVVENPVP------------DGYAHSSGQRVLTFTLGDMQPGEHR 276 Query: 683 TVTFQV------RVTSTPSGGTIANRGNVAANFVVIPNQPPVTINRQTNTVVTQVNTGGL 736 T+T + R T+ + N A+ + N+P V QV+ G Sbjct: 277 TITVEFCPLKRGRATNIATVSYCGGHKN-TASVTTVINEPCV-----------QVSIAGA 324 Query: 737 NVIKEVNTAQAAVGDTLTYTIAVQNTGNVPLTNVFFQDTISSAVS 781 + + V + Y I+V N G++ L +V +DT+S V+ Sbjct: 325 D--------WSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVT 361 Score = 37.4 bits (86), Expect = 7e-04 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 28/160 (17%) Query: 359 YTITVPNTGTGSAENVVLQDSIPNGTTFIAGSVTVGGVTQPSANPASGINLGTIPNNAQR 418 Y I + N GT +A NVV+++ +P+ G S LG + R Sbjct: 229 YKINIVNQGTATARNVVVENPVPD------------GYAHSSGQRVLTFTLGDMQPGEHR 276 Query: 419 VVTFQVRVMSFPSPNPISNRAMVSYQFRPFVGSPPITSTASSNTVQTTVNRANVS-LQKS 477 +T + + +N A VSY + +T+ + VQ ++ A+ S + K Sbjct: 277 TITVEFCPL---KRGRATNIATVSY-CGGHKNTASVTTVINEPCVQVSIAGADWSYVCKP 332 Query: 478 VDLQTATLNDILTYTVNVTNNGNVAANNVIFVDSIPAGTT 517 V+ Y ++V+N G++ +V+ D++ G T Sbjct: 333 VE-----------YVISVSNPGDLVLRDVVVEDTLSPGVT 361 Score = 32.4 bits (73), Expect = 0.028 Identities = 63/339 (18%), Positives = 118/339 (34%), Gaps = 58/339 (17%) Query: 481 QTATLNDILTYTVNVTNNGNVAANNVIFVDSIPAGTTFVTNSVTVNGVARPGANPASSIN 540 + A L + Y +N+ N G A NV+ + +P +G A + Sbjct: 219 ENACLRCPVVYKINIVNQGTATARNVVVENPVP------------DGYAHSSGQRVLTFT 266 Query: 541 LGSINASQTTVVRFQVRVTSNPLVNPIPNRASATFNFIPVPGQQPVSGQATSNTVFTTIN 600 LG + + + V P + N V G + +V T IN Sbjct: 267 LGDMQPGEHRTI----------TVEFCPLKRGRATNIATV---SYCGGHKNTASVTTVIN 313 Query: 601 IADIRTRKTVDRAFATINDVLTYTVTIENTGNVLATNVIFQDPTPIGTTFIPNSVTVDGV 660 ++ ++ + + Y +++ N G+++ +V+ +D G T + Sbjct: 314 EPCVQV-SIAGADWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVTVL--------- 363 Query: 661 SQPGANPATG---FTVANISPGGSRTVTFQVRVTSTPSGGTIANRGNVAANFVVIPNQPP 717 GA + +TV ++PG ++ ++V + + G N V + + Sbjct: 364 EAAGAQISCNKVVWTVKELNPG--ESLQYKV-LVRAQTPGQFTNNVVVKSC----SDCGT 416 Query: 718 VTINRQTNTVVTQVNTGGLNVIKEVNTAQAAVGDTLTYTIAVQNTGNVPLTNVFFQDTIS 777 T + T V + V+ + VG+ Y I V N G+ TNV S Sbjct: 417 CTSCAEATTYWKGVAATHMCVVDTCDP--VCVGENTVYRICVTNRGSAEDTNVSLMLKFS 474 Query: 778 SAVSFVA-----------NTVTINGVPQSGLNPNTGFSL 805 + V+ NTV + +P+ G FS+ Sbjct: 475 KELQPVSFSGPTKGTITGNTVVFDSLPRLGSKETVEFSV 513 Score = 31.6 bits (71), Expect = 0.046 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 26/161 (16%) Query: 885 LVYTIEVINAGSVPATNVFFQDSIPQGTLFIENSVFVNGVLQEGADPELGFPLNNLPTGA 944 +VY I ++N G+ A NV ++ +P +G L F L ++ G Sbjct: 227 VVYKINIVNQGTATARNVVVENPVP------------DGYAHSSGQRVLTFTLGDMQPGE 274 Query: 945 SVIVTFEVLIDEIPQGNNVVNNANVTGDFLVNPTEPPITVTVPSNTVMTVVNSSGLNVMK 1004 +T E + + N+ + G + +V TV+N + V Sbjct: 275 HRTITVEFCPLKRGRATNIATVSYCGGH-------------KNTASVTTVINEPCVQVSI 321 Query: 1005 SVSATEAGVGDTLTYTVRIQNSGTVAATNVSFLDPIPSGTT 1045 + A + V + Y + + N G + +V D + G T Sbjct: 322 A-GADWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVT 361
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.1 bits (171), Expect = 2e-16 Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 18/241 (7%) Query: 2 RYVIVTGTSQGLGEAIATQLLEENTSIISISRRENKELAKLAEQYNSNCIFHS----IDL 57 + +TG +QG+GEA+A L + I ++ N E + H+ D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDY--NPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 58 QDVHNLETHFNEVFSSIQKDNVSSIHLINNAGTVAPMKPIEKSESEQFITNVHINLIAPM 117 +D ++ E+ + I+++ L+N AG V I E++ +N Sbjct: 67 RDSAAID----EITARIEREMGPIDILVNVAG-VLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 118 ILTSTFMKQTKDWKVDKRIINISSGAGKNPYFGWGAYCTTKAGVNMFTQCVATEEVEKEY 177 + + K D + I+ + S P AY ++KA MFT+C+ E EY Sbjct: 122 NASRSVSKYMMD-RRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA--EY 178 Query: 178 PVKTVAFAPGVVDTNMQAQI--RDTNKEDFI--NLDRFTALKEEGKLLSPEYVAKAIRNL 233 ++ +PG +T+MQ + + E I +L+ F KL P +A A+ L Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 234 L 234 + Sbjct: 239 V 239
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.2 bits (65), Expect = 0.019 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 14/73 (19%) Query: 206 NNITVNFVYTPKEARKKG---------YASSCVAALSQRMLDEGYKTTTLYTDLANPTSN 256 N I +NFV P+ +++G A VAA + R+L+ + LY DL Sbjct: 328 NQIHLNFVMPPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKDLV----- 382 Query: 257 KIYQEIGYEKMME 269 K+ + G K ME Sbjct: 383 KLQRHAGIRKAME 395
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.8 bits (80), Expect = 4e-04 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 17/163 (10%) Query: 13 IFVLLISGNFLVKKVWSSNNDDAQYIASFIE-EHKDEKNSALLIKRNDKVVYSVNPDVVL 71 I + +IS + + E + + + + + + D Sbjct: 4 IRLCIIS-LLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERF 62 Query: 72 PVASTMKLIVALEYTKQVTEGKIDPSSFVSINDVNRYYVPGTDGGAQDRWQNYLQKKEKI 131 P+ ST K+++ +V G + Q +Y EK Sbjct: 63 PMMSTFKVVLCGAVLARVDAGDEQLERKIHYR--------------QQDLVDYSPVSEKH 108 Query: 132 TEGAVSLEEVAKGMVKFSSNANTEYLMEVL-GLDNINRNLQSL 173 +++ E+ + S N+ L+ + G + L+ + Sbjct: 109 LADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQI 151
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 28.3 bits (63), Expect = 0.043 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 9/108 (8%) Query: 45 RVHMMFISAAVLTLSIVSMSEFSIQSFAQNGGMFNYVKKNAFSDYENEEEIKSNVNYPDK 104 R + + A + + IQ +N GM + N+ I Y Sbjct: 343 RRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQF--TNSGLPIST--AIAGANQYNKD 398 Query: 105 EKIHQKMLDSIDHFQNVSGQFEEYSSSTRIATTYKYAIETEKQSGISS 152 + + ++ F ++ F + + + + A+ + ++ I + Sbjct: 399 GTVSSSLASALSSFNGIAAGFYQGNWAMLLT-----ALSSSTKNDILA 441
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 94.1 bits (234), Expect = 4e-23 Identities = 69/355 (19%), Positives = 120/355 (33%), Gaps = 71/355 (20%) Query: 278 ILVTGAGGSIGSEICRQIAKFRPKKLILLGHGE------NSIYSIEMELNRKYGDMKGTF 331 LVTGA G IG + K+L+ GH N Y + ++ R + F Sbjct: 3 YLVTGAAGFIGFHVS--------KRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGF 54 Query: 332 IPEIADIQDEKKMQLIMSKHLPNVVYHAAAHKHVPLMENNPEEAVKNNLIGTMNVSEAAR 391 D+ D + M + + V+ + V NP +NL G +N+ E R Sbjct: 55 QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 392 AHGVGTFVMISS---------------DKAVNPTSVMGATKKLAEMVIQHKDKISHTKFV 436 + + + SS D +P S+ ATKK E++ + Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 437 TVRFGNVLGSRGS---VIPLFKKQIQNGGPVTV-THPDMVRYFMTI-------------- 478 +RF V G G + F K + G + V + M R F I Sbjct: 175 GLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 479 ----PEASRLVVQAGALAKGGEIFVLDMGEPVKIVDLAKNLIRLSGNSVDEIGIEFTGIR 534 + + A ++ + PV+++D + L G E ++ Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNMLPLQ 291 Query: 535 PGEKLFE----ELLKEDEMNEKQIHPRIYVGQEMNVRIEE-IEEFISSYTDLNEV 584 PG+ L + L E +G +++ ++ F++ Y D +V Sbjct: 292 PGDVLETSADTKALYEV------------IGFTPETTVKDGVKNFVNWYRDFYKV 334
>PF05043#Transcriptional activator Length = 493 Score = 32.2 bits (73), Expect = 0.003 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 19/123 (15%) Query: 196 AIKNSAVVKWILKFKSVLKQEDIDS------QVKNFVNNYLNISNDGGAAASSDPRYDLE 249 I+N + W L + L ++++ + Q N + N+ NI SD + +L Sbjct: 308 EIENKDNLIWHLHNTAHLYRQELFTEFILFDQKGNTIRNFQNIF----PKFVSDVKKELS 363 Query: 250 QVKPEAFVPDSKQMQETIQRIYNFFNTNENIIQSKYNEDEWNAYYESEIEVFAMQLAGEY 309 V S M Y F ++++ + +++V M +Y Sbjct: 364 HYLETLEVCSSSMM--VNHLSYTFITHTKHLVINLLQNQP-------KLKVLVMSNFDQY 414 Query: 310 TRK 312 K Sbjct: 415 HAK 417
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 27.4 bits (61), Expect = 0.006 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Query: 16 DEVLTTPEVMDVLGISKARISKMIKDGKL 44 D V+T ++D GI KA I +KDG++ Sbjct: 69 DTVITNALILDHWGIVKADIG--LKDGRI 95
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 27.1 bits (60), Expect = 0.027 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 3/47 (6%) Query: 1 MQDLIKQYNTTLKQLRETQMDAKQEDVKILTDIISDITYSLE---WM 44 +Q L+ Y + + A++ D+ + +E WM Sbjct: 101 VQALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWM 147
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 25.2 bits (55), Expect = 0.047 Identities = 7/29 (24%), Positives = 15/29 (51%) Query: 23 LRDKRLSELLKRCRRLENEGFDYLFPIRK 51 +++K + KR + E ++L P R+ Sbjct: 281 VQEKIFKNMSKRAASMLKEDMEFLGPTRR 309
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.002 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%) Query: 90 LHMLFRGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERA----DLVG-EYIGH----- 139 L ++ G GTGK VAR + + G V A DL+ E GH Sbjct: 161 LTLMITGESGTGKELVARAL----HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 140 -TAQKTRD-LIKKAMGGILFIDE 160 AQ ++A GG LF+DE Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDE 239
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 72.9 bits (179), Expect = 8e-17 Identities = 59/285 (20%), Positives = 94/285 (32%), Gaps = 54/285 (18%) Query: 8 LITGANGFTGRHACQYFLEQGFHVI----------PMF-QNRSHREKIENG--ITCDLTN 54 L+TGA GF G H + LE G V+ Q R DL + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 55 KSEVMKVIKQIKPDYVLHLAGRNSVNESWTASLEYIEINVIGTLYLLEAIKQEASHCKTL 114 + + + + V R +V S Y + N+ G L +LE + + + L Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH--NKIQHL 121 Query: 115 VIGSA-----------LQADSMKNIKVSNPYSLSKTMQVIIAEAWGGLMDSNIIIAKPSN 163 + S+ D + VS Y+ +K ++A + L + Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS-LYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 164 LIGP-GVSNGVCSILAKKMIDIESGRSKAIIEVNSLKDSRDFLDVRDAVKA----YHVLL 218 + GP G + K M++ K+I N K RDF + D +A V+ Sbjct: 181 VYGPWGRPDMALFKFTKAMLE-----GKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235 Query: 219 RDGIN--------------GKQYNIGSGVKRSLLD---VLEQYKG 246 + YNIG+ L+D LE G Sbjct: 236 HADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG 280
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 79.8 bits (197), Expect = 5e-19 Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 25/223 (11%) Query: 6 ILITGGTGSWGHELIKQLLEKSPKEIRVFSRNE--TVQFEM-QQQFINEERLKFIIGDIR 62 L+TG G G + K+LLE + + + + N+ V + + + + + +F D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 63 DKEQL--VYACQGVHYVFHLAALKHVPVCEYYPYEAIKTNIHGTQNVIEASIQNQVEKVI 120 D+E + ++A VF V P+ +N+ G N++E N+++ ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 121 YVST---------------DKAADPSNTYGMTKAIGEKLMVHANVQTKKTKFICVRGGNV 165 Y S+ D P + Y TK E LM H +R V Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE-LMAHTYSHLYGLPATGLRFFTV 181 Query: 166 LGTSGS---VVPLFKKQIKQSSKVGI-TDANMTRFFLTIEDAV 204 G G + F K + + + + M R F I+D Sbjct: 182 YGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIA 224
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 29.9 bits (67), Expect = 0.034 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 357 FAACGLLFR--QNGEYIFKTHSFVRKEFVDIYYGYSKKAGEYKKQKFAPIKDWEEQGLLT 414 LLFR E+ +EF++ SK + I D +G +T Sbjct: 15 LIFAALLFRPAAAEEFSASFKGTDIQEFIN---TVSKNLNK------TVIIDPSVRGTIT 65 Query: 415 VVDEPTINPQHIVDWFVEMREQYGVKKIIADNFRMEAIRP 454 V +N + +F+ + + YG I +N ++ +R Sbjct: 66 VRSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRS 105
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 30.2 bits (68), Expect = 0.004 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 3/39 (7%) Query: 6 PIRNPEQIQQIKEYLKEKSNRNYILFVMGINTGLRISDI 44 I+ I +K+Y + N I ++ G+ ++ Sbjct: 99 EIKTDFTINLLKDYFSSLTIDNMISKMIS---GVVTEEL 134
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.017 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 399 KKRIAKGSGTTVQEINRLIKQFDDMKKMMKTMTGMQKGK 437 K++ G +V +IN KQ + + +TG+ G Sbjct: 154 DKQVNIAIGASVDQINNYAKQIASLNDQISRLTGVGAGA 192
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.8 bits (113), Expect = 2e-07 Identities = 38/274 (13%), Positives = 82/274 (29%) Query: 667 KQAKSSLLGRQRELEEWTKKLTDMEEKTTKLENFVKAVKQEIQEKEVQIRELRQGVETER 726 ++ ++ ++ LE T K LE A+ + E + + Sbjct: 116 QELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 175 Query: 727 VDEQKLREEINRLELDEHRINDRLSIYDLEIEGFLQDQVKMQGRKEELEKILATLQAEIG 786 + L E LE + + L ++ K L A L+ + Sbjct: 176 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 235 Query: 787 ELDSKIVVLTKQKSEQYSSKEKVQKEMTELKVQAAEQQQRLSNQKEKVERLTKEKEETDA 846 + + + + K ++ EL+ + K++ L EK +A Sbjct: 236 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA 295 Query: 847 TLVKTKEDLAFLKQEMTSNSSGEEQITNMIEKKAYDRNQTSELIRSRREQRVSLQERVEH 906 + L S + ++ + + E + R SL+ ++ Sbjct: 296 EKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA 355 Query: 907 LERGVKETIGKHKYILEMLKDQEVKINRLDVELE 940 K+ +H+ + E K E L +L+ Sbjct: 356 SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLD 389 Score = 47.4 bits (112), Expect = 3e-07 Identities = 36/291 (12%), Positives = 86/291 (29%), Gaps = 11/291 (3%) Query: 232 HEIEELHEKWEALRNQFGHNKDEEAKMSANLQKSEEELEELRGQLQAVDESVNSLQEVLL 291 ++ + L+ + + + + EEL + +L+ D+S++ + Sbjct: 57 ERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQ 116 Query: 292 LSSKELEKLEGQRELLKERKQNATTHCAQLEKLIVELTEKTTSYDGEIETSTEALMQFVN 351 LE E + LE L + + +E + Sbjct: 117 ELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 176 Query: 352 QVKELEKKLHDNEQLLATFAENLEEQIENLKGDYIELLNQQASLRNELSMIEEQSKQQNS 411 ++K LE + LE + L+ +N + ++ +E + + Sbjct: 177 KIKTLEAEK-----------AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 412 KNERLDEENEKYVQMRVEITAKKAKLVDSYEQAREKIAGIISNIQKTETALGKCKSQYSE 471 + L++ E + +AK L + A + ++ ++ Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 472 NETKLYQAYQFVQQARSRKEMLEEMQEDYSGFYQGVREVLKARENRLQGIE 522 E + + ++L ++ RE K E Q +E Sbjct: 286 LEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Score = 39.7 bits (92), Expect = 7e-05 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 1/161 (0%) Query: 153 KSEERRGVFEEAAGVLKYKLRKKKAEGKLAETQEN-LNRVQDIIHELSSQVEPLERQASI 211 E + E L+ L + L + + + +E A Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 212 AKDYLEKKEELEKVEAALIVHEIEELHEKWEALRNQFGHNKDEEAKMSANLQKSEEELEE 271 K + + E A + EL + E N + + + A E E + Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 272 LRGQLQAVDESVNSLQEVLLLSSKELEKLEGQRELLKERKQ 312 L Q Q ++ + SL+ L S + ++LE + + L+E+ + Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Score = 35.4 bits (81), Expect = 0.001 Identities = 43/330 (13%), Positives = 99/330 (30%), Gaps = 34/330 (10%) Query: 150 LSSKSEERRGVFEEAAGVLKYKLRKKKAEGKLAETQENLNRVQDIIHELSSQVEPLERQA 209 +SK +E + L+ + + + L + + + +E A Sbjct: 111 KASKIQELEARKADLEKALEGAMNFST---ADSAKIKTLEAEKAALAARKADLEKALEGA 167 Query: 210 SIAKDYLEKKEELEKVEAALIVHEIEELHEKWEALRNQFGHNKDEEAKMSANLQKSEEEL 269 K + + E A + EL + E N + + + A Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Query: 270 EELRGQLQAVDESVNSLQEVLLLSSKELEKLEGQRELLKERKQNATTHCAQLEKLIVELT 329 +L L+ + + LE L Sbjct: 228 ADLEKALEGAMNFSTADSAKI----------------------------KTLEAEKAALE 259 Query: 330 EKTTSYDGEIETSTEALMQFVNQVKELEKKLHDNEQLLA---TFAENLEEQIENLKGDYI 386 + + +E + ++K LE + E A ++ L ++L+ D Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 387 ELLNQQASLRNELSMIEEQSKQQNSKNERLDEENEKYVQMRVEITAKKAKLVDSYEQARE 446 + L E +EEQ+K + + L + + + + ++ A+ KL + + + Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 379 Query: 447 KIAGIISNIQKTETALGKCKSQYSENETKL 476 + ++ + A + + E +KL Sbjct: 380 SRQSLRRDLDASREAKKQVEKALEEANSKL 409 Score = 32.3 bits (73), Expect = 0.014 Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 7/183 (3%) Query: 666 VKQAKSSLLGRQRELEEWTKKLTDMEEKTTKLENFVKAVKQEIQEKEVQIRELRQGVETE 725 + + +L G + K+ +E + LE ++ + Q + LR+ ++ Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 726 RVDEQKLREEINRLELDEHRINDRLSIYDLEIEGFLQDQVKMQGRKEELEKILATLQAEI 785 R +++L E +LE ++ I + + +D + K++LE L+ + Sbjct: 322 REAKKQLEAEHQKLE-------EQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQN 374 Query: 786 GELDSKIVVLTKQKSEQYSSKEKVQKEMTELKVQAAEQQQRLSNQKEKVERLTKEKEETD 845 ++ L + +K++V+K + E + A ++ +E + KEK E Sbjct: 375 KISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQ 434 Query: 846 ATL 848 A L Sbjct: 435 AKL 437
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.1 bits (60), Expect = 0.023 Identities = 8/30 (26%), Positives = 13/30 (43%) Query: 22 FFILRKDTTIICIVFIFLLALTATSSLPLA 51 FFI R + + + + A LP+A Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVA 33
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.8 bits (75), Expect = 0.003 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 20/83 (24%) Query: 17 IVATDLLVQDGKIAKV--AEN---------ITADNAEVIDVNGKLIAPGLVDVHVHLREP 65 IV D+ ++DG+IA + A N I EVI GK++ G +D H+H P Sbjct: 83 IVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFICP 142 Query: 66 GGEHKETIETGTLAAAKGGFTTI 88 + IE A G T + Sbjct: 143 -----QQIEE----ALMSGLTCM 156
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 180 bits (458), Expect = 4e-51 Identities = 100/476 (21%), Positives = 196/476 (41%), Gaps = 96/476 (20%) Query: 8 LRNIAIIAHVDHGKTTLVDQLLRQAGTFRANEHIEE--RAMDSNDLERERGITILAKNTA 65 + NI ++AHVD GKTTL + LL +G +++ D+ LER+RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 66 IHYEDKRINILDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTRFVLKKALEQNLT 125 +E+ ++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + + Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 126 PIVVVNKIDRDFARPDEVVDEVVDLF---------IELG-------------------AN 157 I +NKID++ V ++ + +EL N Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 158 EDQLE--------------------------FPVVFASAMNGTASLDSNPANQEENMKSL 191 +D LE FPV SA N + +L Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNN------------IGIDNL 230 Query: 192 FDTIIEHIPAPIDNSEEPLQFQVALLDYNDYVGRIGVGRIFRGTMKVGQQVALMKVDGSV 251 + I + + L +V ++Y++ R+ R++ G + + V + + + Sbjct: 231 IEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKE--- 287 Query: 252 KQFRVTKLFGYIGLKRQEIEEAKAGDLVAVSGMEDINVGETVCPVEHEEALPLLRIDEPT 311 + ++T+++ I + +I++A +G++V + E + + + + + P Sbjct: 288 -KIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPL 345 Query: 312 LQMTFLVNNSPFAGREGKFITSRKIEER------LRSQLETDVSLRVDNTDSPDAWIVSG 365 LQ T + K ++R L ++D LR + I+S Sbjct: 346 LQTT---------------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSF 390 Query: 366 RGELHLSILIENMRRE-GYELQVSKPEVIIKDVDGVRSEPVERVQIDVPEEYTGSI 420 G++ + + ++ + E+++ +P VI + ++E +++ P + SI Sbjct: 391 LGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 39.8 bits (93), Expect = 3e-05 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 403 EPVERVQIDVPEEYTGSIMESMGARKGEMLDMVNNGNGQVRLTFMVPARGLIGYTTEFLT 462 EP +I P+EY ++D N +V L+ +PAR + Y ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNN-EVILSGEIPARCIQEYRSDLTF 595 Query: 463 LTRGYGILNHTFDCYQP 479 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHV 612
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 34.1 bits (78), Expect = 0.001 Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 1/151 (0%) Query: 133 EQFNHLLMYYRTYGIQISINKVGTGTSN-LERISVLAPDILKVDLTNLRQTALLQSYQDI 191 + + +K+ TG S L +DL+ +++ +D+ Sbjct: 179 DMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDL 238 Query: 192 LYSLSLLARRIGATLLYEEIDAFYQLQYAWKNGGRYYQGNYLKECLPDFIETNVLKERLG 251 + FY L K + Q + + L +F +RL Sbjct: 239 FKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLK 298 Query: 252 NECHQFILHEKKKLQKIYNLTEMLRDRIGDV 282 ++ + + ++L + + Sbjct: 299 SKSSDLQKIVMNNINRCTKKDKILNNTLKKC 329
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.4 bits (247), Expect = 4e-27 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 11/257 (4%) Query: 11 VKEKVVIITGGSSGMGKGMAIRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQVLSVQMD 70 ++ K+ ITG + G+G+ +A A +GA + EKLE+ ++ + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 71 VRNTDDIQKMIEHIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQ 130 VR++ I ++ I+ + G IDIL+N A LS W + ++ G F S+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 131 AIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVN 190 ++ KY +++ G+I+ + + A + A++KA + TK L +E +Y IR N Sbjct: 126 SVSKYMMDRR-SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA-EYNIRCN 183 Query: 191 AIAPGPIERTGGADKLWISEEMAKRTLQ--------SVPLGRMGTPEEIAGLAYYLCSDE 242 ++PG T LW E A++ ++ +PL ++ P +IA +L S + Sbjct: 184 IVSPGST-ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 243 AAYINGTCMTMDGGQHL 259 A +I + +DGG L Sbjct: 243 AGHITMHNLCVDGGATL 259
>PERTACTIN#Pertactin signature. Length = 922 Score = 25.1 bits (54), Expect = 0.041 Identities = 13/38 (34%), Positives = 15/38 (39%) Query: 38 GLLGGALAFGPRPFYPPYPPPFPPPAPFPCYGGPCQQP 75 L+G P+P P P P P P P P Q P Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPP 598
>PF06580#Sensor histidine kinase Length = 349 Score = 36.0 bits (83), Expect = 2e-05 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 13/82 (15%) Query: 29 QLDPTMEELTEIKTVVSEAVTNAIIHGYEGNAE-GVVYISVILEEAMVKLTIRD------ 81 Q++P + ++ +V V N I HG + G + + + V L + + Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL 304 Query: 82 ------EGIGIFNLDEARQPLF 97 G G+ N+ E Q L+ Sbjct: 305 KNTKESTGTGLQNVRERLQMLY 326
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 45.9 bits (109), Expect = 1e-07 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 14/145 (9%) Query: 7 ILVCFM-LLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSA----IVIEQDTGKVLFDK 61 I +C + LL + A + +Q K L+E S I ++ +G+ L Sbjct: 4 IRLCIISLLATLPLAVHASPQPLEQIK-------LSESQLSGRVGMIEMDLASGRTLTAW 56 Query: 62 NPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGSQIFLE-PGEEMTV 120 +E+ P S K++ ++ +V+ G +L K+ + + S + + + MTV Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQ-QDLVDYSPVSEKHLADGMTV 115 Query: 121 NEMLKGIAIASGNDASVAVAEHIAG 145 E+ S N A+ + + G Sbjct: 116 GELCAAAITMSDNSAANLLLATVGG 140
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 229 bits (585), Expect = 4e-74 Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 36/344 (10%) Query: 5 RILVINPGSTSTKIGVFDNE------RPVLEE--------TIRHDVEQIGKYKRIIDQYE 50 +ILVIN GS+S K + +++ + + E T + E+I K + D + Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 51 FRKETILEVLHSHGINISKLNAVCGRGGLLRPIEGGTYTVNDAMLED--LKNGFSG---- 104 K + +++S I ++ + G R + GG Y + ++ D LK Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGH--RVVHGGEYFTSSVLITDDVLKAITDCIELA 119 Query: 105 --HHASNLGGILAY-EIASGLNIPAFIVDPVVVDEMEPIARISGI------AGMERKSIF 155 H+ +N+ GI A +I + + A + D M A + I RK F Sbjct: 120 PLHNPANIEGIKACTQIMPDVPMVA-VFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGF 178 Query: 156 HALNQKAVARKVADELNHKYEDLNLLVTHMGGGITVGAHKKGKVIDVNNGLNG-EGPFSP 214 H + K V+++ A+ LN E L ++ H+G G ++ A K GK ID + G EG Sbjct: 179 HGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMG 238 Query: 215 ERAGTVPVGQLVEMCFSGEYYRDEMVKKLVGQGGLVSLIGTNDAIK--VEQMVEKGDPEA 272 R+G++ + + +E+V L + G+ + G + + + + GD A Sbjct: 239 TRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRA 298 Query: 273 TLIYKAMAYQVAKEIGGASAVLHGKIDAIVLTGGLAYSKILVDE 316 L AY+V K IG +A + G +D IV T G+ + + E Sbjct: 299 QLALNVFAYRVKKTIGSYAAAM-GGVDVIVFTAGIGENGPEIRE 341
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 399 bits (1027), Expect = e-135 Identities = 135/497 (27%), Positives = 221/497 (44%), Gaps = 73/497 (14%) Query: 229 VTDLKEIQTLLEAIIN----------SSEEAISVVDEKGRGLVINPAYTKLTGLTEEEII 278 D I+T+L ++ ++ + LV+ Sbjct: 9 ADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVV---------------- 52 Query: 279 GKPATTDIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIV----NVAPVIVDGILKGSV 334 TD+V + +L + R V+V N + KG+ Sbjct: 53 -----TDVVMPDENAFDLLPRIKKAR--------PDLPVLVMSAQNTFMTAIKASEKGAY 99 Query: 335 GVIRDVSEIQKLTNELNRA-----RQIIRTLEAKYSFDDIVGDSDETTAAIEQAKLGANT 389 + ++ +L + RA R+ + + +VG S T Sbjct: 100 DYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQT 159 Query: 390 PATVLLRGESGTGKELFAHAIHNSSNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGA 449 T+++ GESGTGKEL A A+H+ R+ FV +N AAI L+ESELFG+E+GAF+GA Sbjct: 160 DLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA 219 Query: 450 KRGGKRGFFEEANNGSVFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAA 509 + G FE+A G++FLDEIG++ + Q +LLRVLQ+ E VGG I +VR++AA Sbjct: 220 QTRST-GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAA 278 Query: 510 THVNLEKGILEGEFREDLYYRLNKIPIQIPSLRQRKGDIPAIAERLIQKINQDYGRNVEG 569 T+ +L++ I +G FREDLYYRLN +P+++P LR R DIP + +Q+ ++ G +V+ Sbjct: 279 TNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKR 337 Query: 570 LTDSAVSYLQSYEWPGNVRELENILGRAIIFMNYNEIYIDVHH----------------- 612 A+ ++++ WPGNVRELEN++ R + I ++ Sbjct: 338 FDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAA 397 Query: 613 ------LPPLHKEEQVEPKQNNLLPELEEKALEHLVTEFEGNIICEYLEKFDGNKTKTAK 666 + +E + + + ++ E E +I L GN+ K A Sbjct: 398 RSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAAD 457 Query: 667 ALGISVRNLYYKLEKYD 683 LG++ L K+ + Sbjct: 458 LLGLNRNTLRKKIRELG 474
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 27.9 bits (62), Expect = 0.017 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Query: 137 EGEIV-EILVNNGQLVEYGQPLFLVKA 162 E IV EI+V G+ V G L + A Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTA 129
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.027 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 24 VTTPDKMNTAAPATGEKMGQEKQGVDKAVTKETTKETTNKETTKENTSKETTNKETDKKE 83 +TTP+ + P+ +E VD+A T ++ T + + +K +K E Sbjct: 997 ITTPNNIQADVPSVPSN-NEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE 1055 Query: 84 NDKKETSKKEASVTVQSSDENFTALRMQMEDQRSVEKEKLQNVMKSSKSS--AEEKSKAK 141 D ET+ + V ++ + Q E ++ Q ++ EEK+K + Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 1e-04 Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 7/110 (6%) Query: 104 KENKEAAEQEETVVEATPKKEVVVEAPKAVTPAPKPITRVETPAAPKPTPVPTPKSVSVE 163 E KE A E+ ++ +PK +P P E Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 164 AAIELSTPAP-------VKKAVPTPVTKQETAPVTPVKPKQPALTETNTK 206 + +T A V PVT+ T + P T T Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 29.6 bits (66), Expect = 0.010 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 93 VIVSEDHPNMPKTVTEAYRIISQGLLDGFKALGLE-AYYAVPKTEADRENLKNPRSG-VC 150 V V + +P+T AY + K LGLE A Y + R N+ +P S Sbjct: 140 VTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI------RCNIVSPGSTETD 193 Query: 151 FDAPSWYEIVVEGRKIAGSAQTRQKGVILQHGSIPLEI 188 W + + I GS +T + G+ L+ + P +I Sbjct: 194 MQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDI 231
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 1e-14 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 6/166 (3%) Query: 2 TANRIKAVALSHFARYGYEGTSLANIAQEVGIKKPSIYAHFKGKEELYFTCLESALQKDL 61 T I VAL F++ G TSL IA+ G+ + +IY HFK K +L+ E + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 62 QSFTDDIENFSKSSTEELLVNLLKGYAKRFGESEESMFWLRTSYFPPDAFRE-QIIDK-- 118 + + F +L +L + E + + + E ++ + Sbjct: 72 ELELEYQAKFPGDP-LSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 119 ANVHIENVGKLLFPVFKRASEQDELH-NIEVKDALEAFLCLLDGLM 163 N+ +E+ ++ K E L ++ + A + GLM Sbjct: 131 RNLCLESYDRIE-QTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 29.5 bits (66), Expect = 0.017 Identities = 15/64 (23%), Positives = 24/64 (37%) Query: 399 DIAKRLLDFGYHPPTIYFPLNVEECIMIEPTETESKETLDGFIDKMIQIAKEVEENPEVV 458 IA+RLL G P I ET + E + ++ QI+ E + + Sbjct: 63 TIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLA 122 Query: 459 QEAP 462 +E Sbjct: 123 EENQ 126
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 28.3 bits (63), Expect = 0.031 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 14/77 (18%) Query: 5 YLPMTEEDKKEMLQTIGVQTIDELFSDIPESVR------------FKGDLKIKEAKSEPE 52 Y +++ +++ + + + F+ + E V+ K ++ AK + Sbjct: 48 YTSKEPINERRVIRIV--NKLTKKFTWLGECVKEFDITEIGEQYSLKETIQDLCAKDFHQ 105 Query: 53 LLKELSQMASKNANLKE 69 LKE ++ KN LK+ Sbjct: 106 KLKEFTEKTPKNQKLKD 122
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 153 bits (388), Expect = 1e-43 Identities = 75/355 (21%), Positives = 133/355 (37%), Gaps = 44/355 (12%) Query: 2 SKIIGIDLGTTNSCVAVMEGGEPKVIPNPEGNRTTPSVVAFKNEERQVGEVAKRQAITNP 61 S + IDLGT N+ + V G P+ R VG AK+ P Sbjct: 10 SNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDR--AGSPKSVAAVGHDAKQMLGRTP 67 Query: 62 NTIMSVKRHMGTDYKVEVEGKDFTPQEISAIILQNLKASAEAYLGETVTKAVITVPAYFN 121 I +++ K V F +++ ++ + +++ + ++ VP Sbjct: 68 GNIAAIR-----PMKDGVIADFFVTEKMLQHFIKQVHSNS---FMRPSPRVLVCVPVGAT 119 Query: 122 DAERQATKDAGRIAGLEVERIINEPTAAALAYGLEKQDEEQKILVYDLGGGTFDVSILEL 181 ER+A +++ + AG +I EP AAA+ GL E +V D+GGGT +V+++ L Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGL-PVSEATGSMVVDIGGGTTEVAVISL 178 Query: 182 ADGTFEVISTAGDNRLGGDDFDQVIIDHLVAEFKKENSIDLSQDKMALQRLKDAAEKAKK 241 + + R+GGD FD+ II+++ + + AE+ K Sbjct: 179 NG-----VVYSSSVRIGGDRFDEAIINYVRRNYG-------------SLIGEATAERIKH 220 Query: 242 DLSGVTQ----TQISLPFISAGAAGPLHLELTLTRAKFEEISAGLVERTLEPTRRALKDA 297 ++ +I + + P L + E + L + AL+ Sbjct: 221 EIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-SNEILEALQEPLTG-IVSAVMVALEQ- 277 Query: 298 GFAPSELDK------VILVGGSTRIPAVQEAIKRETGKEPYKGVNPDEVVALGAA 346 P EL ++L GG + + + ETG +P VA G Sbjct: 278 --CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGG 330
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.0 bits (75), Expect = 4e-04 Identities = 20/122 (16%), Positives = 36/122 (29%) Query: 83 EQFAEAKAVFEQAMQVGLQSADVTFMLGITHVQLGNDRLALPFLQRATELDEGDVEAVFQ 142 E F + ++ + + + L Q G A Q LD D Sbjct: 16 ESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLG 75 Query: 143 CGLCFARLEHIQEAKPYFEKVLEMDEEHADAYYNLGVAYVFEENNEKALTLFKKATEIQA 202 G C + A + MD + ++ + + +A + A E+ A Sbjct: 76 LGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIA 135 Query: 203 DH 204 D Sbjct: 136 DK 137 Score = 31.8 bits (72), Expect = 0.001 Identities = 17/91 (18%), Positives = 33/91 (36%) Query: 8 GIKYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAIVFYKRALELDGK 67 Q G +E+A K F + D+ ++ +G + AI Y +D K Sbjct: 43 AFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIK 102 Query: 68 SAAAYYGLGNVYYGQEQFAEAKAVFEQAMQV 98 + + + AEA++ A ++ Sbjct: 103 EPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>PF05043#Transcriptional activator Length = 493 Score = 24.9 bits (54), Expect = 0.019 Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 25 FISKEQNNTSMELASEFGISLQDVKRLKKQIE 56 FI + + + EF IS + R+ QI Sbjct: 94 FIFFNEGCQAESICKEFYISSSSLYRIISQIN 125
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.4 bits (63), Expect = 0.011 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 16/118 (13%) Query: 16 DGEIVGQIPFGLTLLVGITHEDTEKDATYIAEKIANLRIFEDESGKMNHSVLDMKGQVLS 75 DG+ +PF + V + HE T + + A L ++++ESG +N ++ D+ G ++ Sbjct: 352 DGDGQTFLPFSGGIDV-VGHELTHA----VTDYTAGL-VYQNESGAINEAMSDIFGTLVE 405 Query: 76 ----------ISQFTLYGDCRKGRRPNFMDAAKPDYAEHLYDFFNEEVRKQGLHVETG 123 I + + D AK +H + G+H +G Sbjct: 406 FYANRNPDWEIGEDIYTPGVAGDALRSMSDPAKYGDPDHYSKRYTGTQDNGGVHTNSG 463
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 270 bits (693), Expect = 1e-86 Identities = 96/312 (30%), Positives = 161/312 (51%), Gaps = 20/312 (6%) Query: 450 INFVNIGHKFFLFSIVVVIAGAIILPIFKMNLGIDFASGTRIDLQSKQATTVSNIHKDLK 509 +F F +IV++IA I+ + +N GIDF GT I +S A V L+ Sbjct: 14 FDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALE 73 Query: 510 ELNID---VKEEDIVPTGDDNKGFAVR-----------TLGVLSKDEIAKTKTFFN--DK 553 L + + E +D +R G ++ + K +T D Sbjct: 74 PLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDP 133 Query: 554 YGTEPNVSTVSPTIGKEIARNAFIAVLIASLVIILYVSIRFRFTYALSAVIALLHDAFVM 613 + +V P + E+ A ++L A++VI+ Y+ +RF + +AL AV+AL+HD + Sbjct: 134 ALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLT 193 Query: 614 IVMFSLFQIEVDLTFIAAILTIIGYSINDSIVTFDRNRELYKQKKRVRDIKDLEEIVNSS 673 + +F++ Q++ DLT +AA+LTI GYSIND++V FDR RE + K L +++N S Sbjct: 194 VGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKT----MPLRDVMNLS 249 Query: 674 IRQTIGRSINTVLTVLFPVIALLIFGSESLRNFSLALLIGLVVGTYSSIFVASQIWLMLE 733 + +T+ R++ T +T L ++ +LI+G + +R F A++ G+ GTYSS++VA I L + Sbjct: 250 VNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIG 309 Query: 734 NRRLKRGKTKKK 745 R K K Sbjct: 310 LDRNKEKKDPSD 321 Score = 63.7 bits (155), Expect = 7e-13 Identities = 35/176 (19%), Positives = 81/176 (46%), Gaps = 3/176 (1%) Query: 250 SVGAKFGQQALEQTIFASAIGIAIIFLFMLV-FYRLPGLVAVIMLGLYIFVTLLVFNWMH 308 SVG K + + +++ +I ++ V F L AV+ L + +T+ +F + Sbjct: 142 SVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQ 201 Query: 309 AVLTLPGIAALVLGVGIAVDANIITYERLKEELKI--GKSMMSAFRAGNHRSLSTILDAN 366 L +AAL+ G +++ ++ ++RL+E L + + +LS + Sbjct: 202 LKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTG 261 Query: 367 ITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLLGLLVKSRYFDKK 422 +TT+ A + +G ++GF +++ + G ++V+ + ++ + R +KK Sbjct: 262 MTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKK 317
>PF06580#Sensor histidine kinase Length = 349 Score = 27.5 bits (61), Expect = 0.006 Identities = 8/39 (20%), Positives = 19/39 (48%) Query: 7 NIVMIVAMFAIFYFLLIRPQQKRQKAVAQMQNEIKKGDA 45 N+V++ M+++ YF + +Q + Q + +A Sbjct: 123 NVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEA 161
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 24.4 bits (53), Expect = 0.037 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Query: 1 MTEMPKLLITAGILLIVVGLAWKFIGRLPGDIFVKKGNVTFYFPIITCIVLSIALSFIM 59 M+++ L+ ++L V + F G G I+ + F I++ + LS+ ++ I+ Sbjct: 435 MSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ-----FSITIVSAMALSVLVALIL 488
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.1 bits (86), Expect = 2e-04 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 14/101 (13%) Query: 349 LCLVGPPGVGKTSLARSI-ATSLNRN--FVRVSLGGVRD---ESEIRGHRRTYVGAMPGR 402 L + G G GK +AR++ RN FV +++ + ESE+ GH + GA G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEK---GAFTGA 219 Query: 403 IIQGMKKAKTVNP-VFLLDEIDKMSNDFRGDPSAALLEVLD 442 + + + LDEI M D + LL VL Sbjct: 220 QTRSTGRFEQAEGGTLFLDEIGDMPMDAQ----TRLLRVLQ 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 9e-11 Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 41/214 (19%) Query: 43 ELEQLRKMREVSLTEPLAEKVR----PTSFIDIVGQEDGIKSLK--AALCGPNPQHVIIY 96 +L +L + +L EP + + +VG+ ++ + A ++I Sbjct: 107 DLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166 Query: 97 GPPGVGKTAAARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIY 156 G G GK AR + + KR F+ ++ A I L G Sbjct: 167 GESGTGKELVARALHDYGKRRNGP-------FVAINM--AAIPRDLIESELFGHE----- 212 Query: 157 QGAGAMGQAGIPQPKKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYS 216 GA G G A GG LF+DEIG++ ++L+VL+ + Sbjct: 213 --KGAF--TGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGG--- 265 Query: 217 EENSMIPTYIHDIFQKGLPADFRLVGATTRSPEE 250 + + +D R+V AT + ++ Sbjct: 266 --------------RTPIRSDVRIVAATNKDLKQ 285
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.014 Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 38/198 (19%) Query: 86 VPKPVEIREILDEY--VIGQDNAK-KALAVAVYNHYKRINSNSKIDDV-----ELAKSNI 137 +PKP ++ E++ + + + L + + ++ + ++ L ++++ Sbjct: 102 LPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161 Query: 138 S--LIGPTGSGKTLLAQTL---ARILNVPF------AIADATSLTEAGYVGEDVENILLK 186 + + G +G+GK L+A+ L + N PF AI L E+ G + Sbjct: 162 TLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR--DLIESELFGH-EKGAFTG 218 Query: 187 LIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 246 + E+AE G +++DEI D+ Q LL++L+ Sbjct: 219 AQTRSTGRFEQAEGGTLFLDEIG-------------DMP-MDAQTRLLRVLQQG--EYTT 262 Query: 247 QGGRKHPHQEFIQIDTTN 264 GGR + + TN Sbjct: 263 VGGRTPIRSDVRIVAATN 280
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 112 bits (281), Expect = 3e-33 Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 10/192 (5%) Query: 5 RPKYNQIIDAAVIVIAENGYHQAQVSKIAKQAGVADGTIYLYFKNKEDILISLFQEKMGE 64 + I+D A+ + ++ G + +IAK AGV G IY +FK+K D+ +++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 65 FVETIRQKIAGIESAVAKLFMLVETHFLLLSQNDPL--AIVTQLELRQSNQDLRLKINEV 122 E + A + + H L + + ++ + + + + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 123 LKGY----LQVMDEILETGIKQGEFQADLNVRVARQMIFGTVDEVVTNWVMSDHKYDLVA 178 + +++ L+ I+ ADL R A ++ G + ++ NW+ + +DL Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL-- 187 Query: 179 LSKTVHGLLIAA 190 K +A Sbjct: 188 --KKEARDYVAI 197
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 180 bits (458), Expect = 5e-57 Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 11/258 (4%) Query: 52 AKKVVVLEWVYSEDLLALGVQPVGMADIKNYNKWVNTATKPGKDVVDVGTRQQPNLEEIS 111 ++V LEW+ E LLALG+ P G+AD NY WV+ P V+DVG R +PNLE ++ Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLP-DSVIDVGLRTEPNLELLT 93 Query: 112 RLKPDLIITASFRSKAIKNELEQIAPTVMFDPSTSNNDHFAEMTETFKQIAKAVGKEEEG 171 +KP ++ S L +IAP F+ S A ++ ++A + + Sbjct: 94 EMKPSFMVW-SAGYGPSPEMLARIAPGRGFNFSDGKQP-LAMARKSLTEMADLLNLQSAA 151 Query: 172 KKVLADMDKTFADAKAKIDKADLKDKNIAMVQAFTAKNVPTFRILTDNSTALQVTKKLGL 231 + LA + K + K + + + +++ + NS ++ + G+ Sbjct: 152 ETHLAQYEDFIRSMKPRFVKRGARP--LLLTTLIDPRHM---LVFGPNSLFQEILDEYGI 206 Query: 232 TNTFEAGKSEADGFKQTTVESLQSVQNSNFIYIVADDDNIFDTQLKGNPAWEGLNFKKED 291 N ++ G++ G +++ L + ++ + + D+ D L P W+ + F + Sbjct: 207 PNAWQ-GETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMD-ALMATPLWQAMPFVRAG 264 Query: 292 KMYKLKGDTWIFGGPESA 309 + ++ W +G SA Sbjct: 265 RFQRVP-AVWFYGATLSA 281
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 31/137 (22%) Query: 185 LEKKEVISVEKAMAELDELIGLQSVKQKVKEIYNLVIFNQMRKEQGMKTDNLSLHMIFTG 244 K+ +E + L+G + Q++ + M+TD L ++ TG Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYR----------VLARLMQTD---LTLMITG 167 Query: 245 NPGTGKTTVARLV-------AKIFKAL--GVLSKGHLVETDRSELVG----EFIGHTAPK 291 GTGK VAR + F A+ + + L+E SEL G F G Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPR-DLIE---SELFGHEKGAFTGAQTRS 223 Query: 292 TMKKIKEALGGVLFVDE 308 + ++A GG LF+DE Sbjct: 224 -TGRFEQAEGGTLFLDE 239
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 24.7 bits (54), Expect = 0.025 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%) Query: 19 DQLQETIVDAIQSGEEKMLPGLGVLFEVIWKNA 51 D + + + GE+ L G G FEV + A Sbjct: 27 DAVFSAVSSYLAKGEKVQLIGFGN-FEVRERAA 58
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 142 bits (360), Expect = 5e-39 Identities = 86/402 (21%), Positives = 175/402 (43%), Gaps = 18/402 (4%) Query: 106 FVSILNQTIINVALPPLMNEFNVSTSTAQWLITGFMLVNGILVPISAFLVSRFTYRKLFI 165 F S+LN+ ++NV+LP + N+FN ++ W+ T FML I + L + ++L + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 166 AAMLFFTVGSIICATSGN-FTMMMTGRVVQAVGAGILMPVGMNIFMTLFPPNKRGAAMGL 224 ++ GS+I + F++++ R +Q GA + M + P RG A GL Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 225 LGVAMILAPAIGPTVTGWVIENYSWNLMFYGMFVIGLIITFLSFKFFTLAQPVSKTKLDV 284 +G + + +GP + G + W+ + + + IIT + K D+ Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 285 FGVISSSIGLGSLLYGFSEAGNNGWTSAEVVITLIIGVIGLAVFIWRELTTDNKMLDLQV 344 G+I S+G+ + + + LI+ V+ +F+ + +D + Sbjct: 202 KGIILMSVGIVFFMLF---TTSYSISF------LIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 345 FKYPTFTFTLVINAIVTMALFGGMLLLPVYLQNIRGFTPMESG-LLLLPGSLIMGIMGPV 403 K F ++ I+ + G + ++P ++++ + E G +++ PG++ + I G + Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 404 AGKLFDKYGIRPLAIVGLAITTFATYKFTTLSMDTPYSVIMTDYIIRSI--GMSFIMMPI 461 G L D+ G + +G+ + + F T S + II + G+SF I Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVS---FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVI 369 Query: 462 MTAGMNALPMKLISHGTATQNTSRQVAGSIGTAILITLMTQQ 503 T ++L + G + N + ++ G AI+ L++ Sbjct: 370 STIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 75.3 bits (185), Expect = 4e-18 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 22/140 (15%) Query: 87 QTVDVTIPQNATVVQSNATT-NAFVGAGSPIAYAFDMS------NLWVTANIEETNIDDV 139 Q + P + V Q T V + M L VTA ++ +I + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETL-----MVIVPEDDTLEVTALVQNKDIGFI 380 Query: 140 QKGQTVDVYVDAYPDTT---LTGKVEQVGLTTANTFSMLPSSNATANYTKVKQVVPVKVS 196 GQ + V+A+P T L GKV+ + L V + Sbjct: 381 NVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI-------EDQRLGLVFNVIISIEENCL 433 Query: 197 LDHSKSVNIVPGMNVSVRIH 216 +K++ + GM V+ I Sbjct: 434 STGNKNIPLSSGMAVTAEIK 453
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 9e-14 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 9 PRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLEKSIEEM 68 + TRQ I D + L ++G + ++ IA+ A V R Y H+ DK DL + E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 69 LEKLAAVIKPQNRNKEDFQLTFDSPHPTFLALFEHIAD 106 + + E P + H+ + Sbjct: 67 ESNIGELE------LEYQAKFPGDPLSVLREILIHVLE 98
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.8 bits (173), Expect = 3e-17 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 9/174 (5%) Query: 2 KQTKQKVIDAAIALFNTKGYDGTSVREIAKRADVNVANISYYFAGKQGLLEQLITDFLEG 61 ++T+Q ++D A+ LF+ +G TS+ EIAK A V I ++F K L ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 62 YIHVIETSFEQREYLSAKDVMVQMVRGI-LRYQFDNRELTRFFYRELSL---DTTLIREV 117 + + + ++ + + R L + ++++ Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 118 MTVYFSRERYYIEQIIKQGQMNQEFK-----KVSFTMFMTQLKGMMNMPFLYPQ 166 IEQ +K + + + + + G+M PQ Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 141 bits (358), Expect = 1e-46 Identities = 74/135 (54%), Positives = 96/135 (71%), Gaps = 10/135 (7%) Query: 1 MWNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLGGVNFTDLKLTFG 60 + EF++FA +GNV+DLAVGV+IGAAFGKIVSSLV DII P LG+++GG++F +T Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 61 KS-------SIMYGNFIQTIFDFLIIAAAIFMFVKVFNKLTSKREEEEKKEELPEPTKEE 113 + + YG FIQ +FDFLI+A AIFM +K+ NKL K+EE P PTKEE Sbjct: 63 DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEP---AAAPAPTKEE 119 Query: 114 EILGEIRDLLKQQNS 128 +L EIRDLLK+QN+ Sbjct: 120 VLLTEIRDLLKEQNN 134
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 48.8 bits (116), Expect = 6e-10 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 4/123 (3%) Query: 30 YNVPITKEEQPDLLEIETFYQRDNGNFWVATYDGKVVGTIALLDIGKHQVALRKMFVKKE 89 ++ P K+ + D +++ + + + ++ + +G I + + + V K+ Sbjct: 42 FSKPYFKQYEDDDMDVS-YVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKD 100 Query: 90 FRGKEWGASYTLLQTAISWAKEKNLKDIYLGTTVKFLAAHRFYEKNNFQSVSIDE-LPKS 148 +R K G LL AI WAKE + + L T ++A FY K++F ++D L + Sbjct: 101 YRKK--GVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSN 158 Query: 149 FPV 151 FP Sbjct: 159 FPT 161
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 72.0 bits (176), Expect = 2e-14 Identities = 63/329 (19%), Positives = 106/329 (32%), Gaps = 6/329 (1%) Query: 378 VELEKSEKATEEVVELEKSEEAAEEVVELEKSEEAAEEVVELEKPEEATEEVVELEETEE 437 VE T + + A V E A + + P AT E Sbjct: 985 VEKRNQTVDTTNITTPNNIQ-ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 438 AIEEVAELEEAEEAAEE--VVELEETKEATEEVVELEKSEEVTEEVVELEETKEATEEVA 495 + +E +E+ E+ A E E KEA V ++ EV + E +ET+ + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 496 ELEEAEEEAAEEVVELEKSEEATEEVVELEEAEEATEEVAELEKSEEVTEEVVEL-EETK 554 E EE+A E + ++ + T +V +E E + AE + + T + E +T Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 555 EATEEVAELEEAEEAAEEVVELEKSEEATEEVVE--LEEAEEATEEVVELEEAEEATEEV 612 + +E E+ V + VVE T+ V E + + Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 613 AELEGTKEEEPTSQETVIEETMNTDLVENTPVAEQPVISQQETITFKEESEVFVPVSETD 672 + T + L + T V+S V VS+ Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHI 1283 Query: 673 EQTKKDVQNFANVLVEEAEEKKQVAEEQP 701 Q + + + NV V K + Q Sbjct: 1284 SQLEMNNEGQYNVWVSNTSMNKNYSSSQY 1312 Score = 67.0 bits (163), Expect = 4e-13 Identities = 58/325 (17%), Positives = 110/325 (33%), Gaps = 9/325 (2%) Query: 319 AEVAANQVEEETLEDVVIVKADEKLEETITIEIPDAFEEAKEAEEVVELEATEEAIEEVV 378 E V+ + ++AD + EI +EA + E E V Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-RVDEAPVPPPAPATPS--ETTETVA 1041 Query: 379 ELEKSEKATEEVVELEKSEEAAEEVVELEKSEEAAEEVVELEKPEEATEEVVELEETEEA 438 E K E T E E + +E A+ E ++EA V + E + E +ET+ Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNR---EVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 439 IEEVAELEEAEEAAEEVVELEETKEATEEVVELEKSEEVTEEVVELEETKEATEEVAELE 498 + E EE A+ VE E+T+E + ++ +E +E V E + ++ Sbjct: 1099 ETKETATVEKEEKAK--VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 499 EAEEEAAEEVVELEKSEEATEEVVELEEAEEATEEVAELEKSEEVTEEVVELEETKEATE 558 E + + + ++E + V + + ++ E T + Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 559 EVAELEEAEEAAEEVVELEKSEEATEEVVELEEAEE-ATEEVVELEEAEEATEEVAELEG 617 + +E + ++ + + + +T L +A + VA G Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVG 1276 Query: 618 TKEEEPTSQETVIEETMNTDLVENT 642 + SQ + E V NT Sbjct: 1277 KAVSQHISQLEMNNEGQYNVWVSNT 1301 Score = 59.3 bits (143), Expect = 1e-10 Identities = 55/290 (18%), Positives = 87/290 (30%), Gaps = 33/290 (11%) Query: 632 ETMNTDLVENTPVAEQPVISQQETITFKEESEVFVPVSETDEQTKKDVQNFANVLVEEAE 691 +T N N V S E I +E+ V P T +T + V + + E Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 692 EKKQVAEEQPALQIEEPKREKKRHVPFNVVMLKQDRKKLMERHAARTNVMQSTVSERVEE 751 + +Q A E Q E +E K +V N + + + Sbjct: 1053 KNEQDATE-TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT-------------- 1097 Query: 752 KPMQQVVVEPQAEEKPMQQVVVEPQAEEKPMQQVVVEPQAEEKPMQQVVVEPQAEEKPMQ 811 E EK + V + +E P V P+ E+ Q EP E P Sbjct: 1098 ----TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 812 QVVVEPQAE-------EKPMQQMVVDPQVEEKPVQQVVVDPQVEESPVQQVVVEAQVEEK 864 + EPQ++ E+P ++ + + V V E+P Q Sbjct: 1154 N-IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ---- 1208 Query: 865 PMPQVVVEPQVEEKPMQQVVVAGQVQEPISSTEVQEKAYVVNQKENDMRN 914 P V E + K + V +T V + N Sbjct: 1209 --PTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTN 1256 Score = 44.3 bits (104), Expect = 4e-06 Identities = 51/298 (17%), Positives = 89/298 (29%), Gaps = 36/298 (12%) Query: 496 ELEEAEEEAAEEVVELEKSEEATEEVVELEEAEEATEEVAELEKSEEVTEEVVELEETKE 555 +L E E + V+ ++ EE+A + +E E Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA---RVDEAPVPPPAPATPSE 1035 Query: 556 ATEEVAELEEAEEAAEEVVELEKSE------EATEEVVELEEAEEATEEVVEL-EEAEEA 608 TE VAE + E E E + +E E +E +A T EV + E +E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 609 TEEVAELEGTKEEEPTSQETVIEETMNTDLVENTPVAEQPVISQQETITFKEESEVFVPV 668 + T E+E ++ VE E P ++ Q + +E+SE P Sbjct: 1096 QTTETKETATVEKEEKAK------------VETEKTQEVPKVTSQVSPK-QEQSETVQP- 1141 Query: 669 SETDEQTKKDVQNFANVLVEEAEEKKQVAEEQPALQIEEPKREKKRHVPFNVVMLKQDRK 728 Q + +N V ++E + + + E+P +E +V V + Sbjct: 1142 -----QAEPARENDPTVNIKEPQSQTNTTADT-----EQPAKETSSNVEQPVT--ESTTV 1189 Query: 729 KLMERHAARTNVMQSTVSERVEEKPMQQVVVEPQAEEKPMQQVVVEPQAEEKPMQQVV 786 ++ VEP + V Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 1e-05 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Query: 23 EEPKKETTSSIQEKNKDNKEDAPVEKQQEEQEKKEQPQAIQTNEQVEHKQEEVPAEEKKE 82 E K+ + ++++ +D E ++ ++ K QTNE + E + + Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100 Query: 83 ETTPLQPTEQPLQNNEQKVESNEKQE 108 + T E+ + KVE+ + QE Sbjct: 1101 KETATVEKEE-----KAKVETEKTQE 1121 Score = 31.2 bits (70), Expect = 0.007 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%) Query: 22 QEEPKKETTSSIQEKNKDNKEDAPVEKQQEEQEKKEQPQAIQTNEQVEHKQEEVPAEEKK 81 +EE K T QE K + +P ++Q E QPQA E + P + Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVSPKQEQSET----VQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 82 EETTPLQPTEQPLQNNEQKVESNEKQEK 109 QP ++ N EQ V + Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNT 1191 Score = 30.4 bits (68), Expect = 0.012 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 5/92 (5%) Query: 23 EEPKKETTSSIQEKNKDNKEDAPVEKQQEE-----QEKKEQPQAIQTNEQVEHKQEEVPA 77 +E K ++ Q E Q E +KE+ ++T + E + Sbjct: 1070 KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV 1129 Query: 78 EEKKEETTPLQPTEQPLQNNEQKVESNEKQEK 109 K+E++ +QP +P + N+ V E Q + Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Score = 28.5 bits (63), Expect = 0.043 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 4/110 (3%) Query: 21 SQEEPKKETTSSIQEKN-KDNKEDAPVEKQQEEQEKKEQPQAIQTNEQVEHKQEEVPAEE 79 ++ + + T +I+E + N + +E EQP T + E P Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 80 KKEETTPLQPTE---QPLQNNEQKVESNEKQEKFLVVIDPGHQQKANLNL 126 T P +E +P + + V S + A +L Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 122 bits (308), Expect = 2e-32 Identities = 95/416 (22%), Positives = 174/416 (41%), Gaps = 28/416 (6%) Query: 4 KVMMSLMLMTFLSAVEGTIVSTAIPRITSDLSGVE-LVSWVYAIYMLATAVSTPIYGKLA 62 ++++ L +++F S + +++ ++P I +D + +WV +ML ++ T +YGKL+ Sbjct: 14 QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 63 DLFGRKKVLLIGATIFLIGSALCGVVTSM-EQLIFFRALQGIGAGAVMPITMTIIGDLYS 121 D G K++LL G I GS + V S LI R +QG GA A + M ++ Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 122 EAKDRAKAQGWMSAVWGVSGVIGPLVGGFLVDSLSWRYIFFLNVPFGIIACLMFATSYKE 181 + R KA G + ++ + +GP +GG + + W Y+ +P I + F + Sbjct: 134 KEN-RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLK 190 Query: 182 SVKSAAKQHIDYLGATVFSLSTIALLYALLTGSSKQNWGDISIIGLLIFAAVSFIIFLYI 241 K H D G + S+ + + + S I LI + +SF+IF+ Sbjct: 191 KEVR-IKGHFDIKGIILMSVGIVFFMLFTTSYS----------ISFLIVSVLSFLIFVKH 239 Query: 242 EKKSPEPLIPLALFSNRTLSTINILTLIAGAMIISITV-----YLPIWSQGVLGKNATEA 296 +K +P + L N + + II TV +P + V + E Sbjct: 240 IRKVTDPFVDPGLGKNIP-----FMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEI 294 Query: 297 GLILM-PIPVMWTFGAIFSGNLVGKLQTKQIILLGASILSVATFLLFTLSTDSPSFLIYV 355 G +++ P + G LV + ++ +G + LSV+ L + F+ + Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTII 354 Query: 356 AVGLFGLGMGLVTPIYMVTIQAAVPANTRGTAVGLNTFINTFSQTLGAAIFGTIFN 411 V + G T I + + G + L F + S+ G AI G + + Sbjct: 355 IVFVLGGLSFTKTVISTIVSSSLKQQEA-GAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 122 bits (306), Expect = 1e-35 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 12/257 (4%) Query: 5 LEGKVVVITGSATGLGRAMGVRFAKEKAKVV-INYRSRESEANDVLEEIKKVGGEAIAVK 63 +EGK+ ITG+A G+G A+ A + A + ++Y + E V+ +K A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEK--VVSSLKAEARHAEAFP 63 Query: 64 GDVTVEADVVNLIQSAVKEFGTLDVMINNAGIENAVPSHEMPLEDWNKVIHTNLTGAFLG 123 DV A + + +E G +D+++N AG+ H + E+W N TG F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 124 SREAIKYFVEHDIKGSVINMSSVHEKIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRV 183 SR KY ++ GS++ + S +P YA+SK + T+ L LE A IR Sbjct: 124 SRSVSKYMMDRR-SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 184 NNIGPGAINTPINAEKFADPKKRDDV--------ESMIPMGYIGKPEEIAAVATWLASAE 235 N + PG+ T + +AD + V ++ IP+ + KP +IA +L S + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 236 ASYVTGITLFADGGMTL 252 A ++T L DGG TL Sbjct: 243 AGHITMHNLCVDGGATL 259
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 0.007 Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 7/92 (7%) Query: 169 IQGPQGPSGNTGATGVTGQGISGPTGITGPTGITGPSGGPPGPTGATGATGPGGGPSGST 228 + G G NTGA +G GPTG+ G GG +G + P GG SGS Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGL-------GVGGGASDGSGWSSENNPWGGGSGSG 53 Query: 229 GATGATGNTGVTGSAGVTGNTGSTGSTGETGA 260 G G G G +G TG A Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85
>PF07675#Cleaved Adhesin Length = 1358 Score = 25.4 bits (55), Expect = 0.023 Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 33 IYAGAGGSSAAVFLNGKRQPEAVIRTSVFLPPLATSTRTLG 73 +YA + G+ A+ F N + +T V P TR G Sbjct: 1175 VYASSTGNDASNFANALLEEVLTAKTVVTAPEAIRGTRAQG 1215
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 55.5 bits (133), Expect = 5e-10 Identities = 28/134 (20%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 18 KETDDTKQQSNDQKGNNQKQTRSMKHNQDKNSQQKNVEQTEGSSQNKQQQSTQEDSSQSK 77 K + +Q + + N++ + K N N+Q V Q+ ++ Q T+E ++ K Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 78 QQQSTQEDSSQNKQQQSTQEDSSQDKQQQSTQEDSSQDKQQPAAQKNPSQDKQQPAAQKN 137 ++++ E + + T + S + +Q ++ Q + +PA + +P+ + ++P +Q N Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA-----EPARENDPTVNIKEPQSQTN 1163 Query: 138 PSQDKQQPAAQKNP 151 + D +QPA + + Sbjct: 1164 TTADTEQPAKETSS 1177 Score = 39.3 bits (91), Expect = 6e-05 Identities = 27/172 (15%), Positives = 68/172 (39%), Gaps = 25/172 (14%) Query: 4 NWLRKKKKSNTADRKETDDTKQQSNDQKGNNQKQTRSMKHNQDKNSQQKNVEQTEGSSQN 63 N T + + D SN N++ R + + E TE ++N Sbjct: 989 NQTVDTTNITTPNNIQADVPSVPSN-----NEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 64 KQQQSTQEDSSQSKQQQSTQEDSSQNKQQQSTQEDSSQ----DKQQQSTQEDSSQDKQQP 119 +Q+S + ++ ++T ++ K+ +S + ++Q + T+E + + ++ Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 120 A---------AQKNPSQDKQQPAAQKNPSQDKQ-------QPAAQKNPSQSA 155 A + +Q+ + +Q +P Q++ +PA + +P+ + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155
>PF06291#Lambda prophage Bor protein Length = 102 Score = 27.7 bits (61), Expect = 0.027 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 16/108 (14%) Query: 1 MEKIKRKLMLLSCISVLSLTGCLQKNIIDDVNLIQGTVFDTAKDNKVKVTFVCPI-QKKG 59 M+ K K ML S + +TGC Q+ + T K+ FV I QKK Sbjct: 1 MQDNKMKKMLFSAALAMLITGCAQQTF----TVGNKPTAVTPKETITHHFFVSGIGQKKT 56 Query: 60 -NKVQVFEGVGNAVKQVKADTSLESSQPFASGQM---RFALFTTRIAK 103 + ++ G N VK E+ Q F +G + ++T A+ Sbjct: 57 VDAAKICGGAENVVK-------TETQQTFVNGLLGFITLGIYTPLEAR 97
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.0 bits (83), Expect = 8e-05 Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 20/157 (12%) Query: 66 NDGKDSNQAIMPKLEQATKSIDEREKVWNKEK----EAFGKAQEEVKSVHKTIDKMEDAA 121 D ++ + T I E+ W +K K + E +V I++ E+ + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 122 --LQKQAKNIQDIYKKRYASFSKINDSYQKLMKSERELYKSLGEKETNLKKVSEKIKGVN 179 + + + + K+ + + + K +++ EL + + Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ--------------LE 276 Query: 180 QMNEDIQREKEKFNRYTQEYNKEKLDFYKQAKIKMKE 216 Q+ +I KE++ TQ + E LD +Q + Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 31.5 bits (71), Expect = 0.003 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 8 KKILLFLSIILLALLMVYVCTNNKHVQNIVHNIEDIYKVYKENQVLKEKIEHQESLKSKV 67 KKILL LS I L V V N NI +DI K N K+ +++ E LK K Sbjct: 5 KKILLGLSPIAAILPAVAVSCGNNDESNISFKEKDISKYTTTNANGKQVVKNAELLKLKP 64 Query: 68 QMLSEE----KENFNK 79 ++++E ++FN+ Sbjct: 65 VLITDEGKIDDKSFNQ 80
>cloacin#Cloacin signature. Length = 551 Score = 25.4 bits (55), Expect = 0.015 Identities = 12/26 (46%), Positives = 13/26 (50%) Query: 36 GASCFGGGGGGCGYGGYGGYGGGYGG 61 G+ GGG G G GG G GG G Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSG 76
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.004 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 17/85 (20%) Query: 19 DIVIENNKIAQVTKAG-----------AGEGGKVLDYSGTYVSSGWIDLHVHAFPEFDPY 67 DI +++ +IA + KAG G G +V+ G V++G +D H+H Sbjct: 87 DIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI------ 140 Query: 68 GDEVDEIGVKQGVTTIVDAGSCGAD 92 + E + G+T ++ G+ A Sbjct: 141 CPQQIEEALMSGLTCMLGGGTGPAH 165
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 32.4 bits (73), Expect = 0.003 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 31/204 (15%) Query: 94 IHHLANGDFSNQVRVSSNDEFGYIAREINVASEKLKEAVERGDFAESSKDQLIVNL---- 149 H+AN S V + F I + A K + ER A + ++L+ Sbjct: 200 SDHIANMWLSKVVDDEGKEIFSGIRHGVISAYGLKKNSSERAVAARNKAEELVSAALYSR 259 Query: 150 -----------AHDLRTPLTSVLGYLDLILKDENLTKEQIKHFSTIAFTKSERLEILIDE 198 DL+ TS+L L +E++ K+Q+ + + E ++LI Sbjct: 260 PELLSQALSGKTVDLKIVSTSLLTPTSLTGGEESMLKDQVNALKGLNSKRGEPTKLLI-- 317 Query: 199 LFEITRMNYGMLQIEKRSIDISELLIQLDEELYPLLEKKGLGARLNMDSYLPINGDGKLL 258 R + G+L+ ++ + ++E L K GLG R N+D D + Sbjct: 318 -----RNSDGLLKEVSVNLKVVTFNFGVNE----LALKMGLGWR-NVDKL----NDESIC 363 Query: 259 ARVFENLLTNAIRYGYDGKFVDVN 282 + + +N L N + G+ + ++ N Sbjct: 364 SLLGDNFLKNGVIGGWAAEAIEKN 387
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99 bits (249), Expect = 2e-26 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 M +IL+ADD+A I ++ L + GY V ++ I DLVV D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGYEVTRQIR-GKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 + +++ +I+ + +P++ +SA+ + + GA DY+ KPF EL+ + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 R 120 Sbjct: 121 E 121
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 40.7 bits (95), Expect = 1e-06 Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 7 LTLQKIVETAAEIADINGIQEVTLASLAQTLGVRSPSLYNHVK 49 L + +++ A E+ + GI +T LAQ LG+ P+LY HVK Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVK 46
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 31.0 bits (70), Expect = 0.003 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 16/85 (18%) Query: 92 TTLAAYEESLKKLELDYLDLYL----VHWPVEGK-YKDSWRALETLYKE---------ER 137 T E SL ++ LY HW V+G + E LY ER Sbjct: 8 TNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAER 67 Query: 138 VRAIGVSNFQIHHLKDVLEGAEIKP 162 + AIG +K+ E A I Sbjct: 68 LLAIGGQPVAT--VKEYTEHASITD 90
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 66.0 bits (161), Expect = 5e-14 Identities = 72/336 (21%), Positives = 126/336 (37%), Gaps = 20/336 (5%) Query: 11 VQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISEDLHVSVTTA---GLTVSLYALGV 67 ++ NR + L +A+ A GIG + + +LP + DL S G+ ++LYAL Sbjct: 1 MKPNRPLIVILSTVALDAVGIG----LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQ 56 Query: 68 AFGAPVLTSLTASMSRKTLLMWIMIVFIIGNGIAAVATSFTVLLIARVVSAFAHGVFMSI 127 APVL +L+ R+ +L+ + + I A A VL I R+V+ Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVA 116 Query: 128 GSTIAAALVPENKRASAIAFMFTGLTVATITGVPIGTFIGQQFGWRASFMVIVVIGIIAL 187 G+ I A + ++RA FM + G +G +G F A F + + Sbjct: 117 GAYI-ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG-GFSPHAPFFAAAALNGLNF 174 Query: 188 VANSMLIPSNLKKGTRVSFRDQFKLITNGRLLLVFVITALGYGGTF-------VTFTYLS 240 + L+P + K R R+ + + R + A F V Sbjct: 175 LTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 241 PLLQEVTGFKSSAVTIILLVYGIAIAIGN-MVGGKLSNH-NPIRALFYMFFIQAIVLFVL 298 ++ + ++ + I L +GI ++ M+ G ++ RAL +L Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL 294 Query: 299 TFTAPFQVAGLITIIFMGLFTFMNVPGLQVYVVILA 334 F +A I ++ M P LQ + Sbjct: 295 AFATRGWMAFPIMVLLASGGIGM--PALQAMLSRQV 328
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 27.1 bits (60), Expect = 0.024 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Query: 53 VNILTKSYDFAQTVATDEVLKSDTVSAITELVEPVKDTVKSMAATAIEAKDRADESNEVI 112 IL + A + LKS + I + E + D K + T + ++R D + ++ Sbjct: 23 AYILANGHATANDRGVIQALKSLAIEKIIHVFENLTDEQKELIDTVLTVQNREDAESFLL 82 Query: 113 GLFGLL---KLLKDPQAQKMFR 131 + + + + +K+F Sbjct: 83 KINPYVIPFQEVTAQTLKKLFP 104
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 29.9 bits (67), Expect = 0.021 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 333 DEIEQGFKEMPTFQSSKETKNIVEWLVDLGIEPSRRQAREDINNGAISMN---------- 382 D I+ KEMP + KE K + + S E+IN+ S+N Sbjct: 77 DMIKLAPKEMPLESAEKEEKKSED------NKKSEEDHTEEINDKIYSLNYNELEVLAKN 130 Query: 383 GEKVTDVSRDVTVENSFDGRFIIIRKGKKNYS 414 GE + + +FI+I + KKN + Sbjct: 131 GETIENFV--PKEGVKKADKFIVIERKKKNIN 160
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.5 bits (63), Expect = 0.040 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 18 HVKQDEMLKNHTHIKVGGKADVFVSPTNYDEIQEVIKYANQYNIPVTFLGNGSNVIIKDG 77 VK D+ K+ K VS YD + +++K + + FL D Sbjct: 418 SVKYDDWAKHLDQFAKYLKITGHVS-FGYDVVSDILKIKDTGDWKPLFLTLEKKAA--DA 474 Query: 78 GLRGITVSLIHITNVT---VTGTAIVAGCGAAIIDVSRI 113 G+ + L + T + G AIV G + ID +++ Sbjct: 475 GVSYVVALLFSLLAGTTLGIWGIAIVTGILCSYIDKNKL 513
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 39.5 bits (92), Expect = 7e-08 Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Query: 1 MHTLLSVLLIIVSILMIVMVLMQSSNSSGLSGAISGGAE-QLFGKQKARGIEAVLNRVTV 59 M+ L V+ +IV+I ++ ++++Q + + + GA LFG + G + R+T Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG---SSGSGNFMTRMTA 57 Query: 60 VLAVLFFVLTIGVTYLN 76 +LA LFF++++ + +N Sbjct: 58 LLATLFFIISLVLGNIN 74
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 30.5 bits (68), Expect = 0.003 Identities = 16/73 (21%), Positives = 37/73 (50%) Query: 24 FWKVMKNFIIIQIARYTPFLSVKNWLYRTFLRMEVGKKTSFALMVMPDIMFPEKITVGDN 83 F ++++ +++ R L V L +F + +++S+ L+++ + P ++ Sbjct: 243 FGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSLLA 302 Query: 84 SIIGYNTTLLAHE 96 IIG N LL+H+ Sbjct: 303 DIIGLNALLLSHK 315
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 26.2 bits (57), Expect = 0.028 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Query: 50 QMYLQIGLNLEETERMLRCLEIEP---HLYENPCSSILALYEDKLDEVTKQITLLSN 103 Q++ Q+ L++ +T + +++ H+ E+P IL LD ++ TLLS+ Sbjct: 10 QLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSH 66
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 29.7 bits (66), Expect = 0.028 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 210 GKDIGYMQITSFAENTAKEFKDQLKELEKKNIKGLVIDVRGNPG 253 GKDI F + T++ K+QL EL NI ++ ++ N Sbjct: 573 GKDITEFDFN-FDQQTSQNIKNQLAELNATNIYTVLDKIKLNAK 615
>SECA#SecA protein signature. Length = 901 Score = 1156 bits (2993), Expect = 0.0 Identities = 437/897 (48%), Positives = 592/897 (65%), Gaps = 65/897 (7%) Query: 1 MIGILKKVF-DVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTIEFKERLTKGETVD 59 +I +L KVF N R ++RM+K V I+A+E ++ L+DE+LKGKT EF+ RL KGE ++ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 DLLPEAFAVVREAANRVLGMRPYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNAL 119 +L+PEAFAVVREA+ RV GMR + VQL+GG+ L+E I+EM+TGEGKTLT+TLP YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 TGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEKQAAYAADITYSTNNE 179 TGKGVHVVTVN+YLAQRDA L EFLGLTVGINL M K+ AYAADITY TNNE Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 LGFDYLRDNMVLYREQCVQRPLNFAIIDEVDSILVDEARTPLIISGQAQKSAELYMFANA 239 GFDYLRDNM E+ VQR L++A++DEVDSIL+DEARTPLIISG A+ S+E+Y N Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNK 241 Query: 240 FVRTL-----------ENEKEYSFDVKTKNVMLTEDGITKAEKAFHI-------DNLFDL 281 + L + E +S D K++ V LTE G+ E+ ++L+ Sbjct: 242 IIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 301 Query: 282 KHVALLHHINQALRAHVVMHLDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKE 341 ++ L+HH+ ALRAH + D DY+V++GE++IVD+ TGR M+GRR+S+GLHQA+EAKE Sbjct: 302 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 361 Query: 342 GVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRSIYNMNVIVIPTNKDIIRD 401 GV+IQNE+ TLA+ITFQNYFR+YEKL+GMTGTA TE EF SIY ++ +V+PTN+ +IR Sbjct: 362 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 421 Query: 402 DRADLIFKSMEGKFNAVVEDIVNRHKQGQPILVGTVAIETSELISKMLTRKGVRHNILNA 461 D DL++ + K A++EDI R +GQP+LVGT++IE SEL+S LT+ G++HN+LNA Sbjct: 422 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 481 Query: 462 KNHAREADIIAEAGMKGAVTIATNMAGRGTDIKLGDDIRNV------------------- 502 K HA EA I+A+AG AVTIATNMAGRGTDI LG + Sbjct: 482 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 541 Query: 503 -----------GLAVIGTERHESRRIDNQLRGRSGRQGDPGVTQFYLSMEDELMRRFGSD 551 GL +IGTERHESRRIDNQLRGRSGRQGD G ++FYLSMED LMR F SD Sbjct: 542 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASD 601 Query: 552 NMKAMMDRLGMDDSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYK 611 + MM +LGM + IE V++A+ +AQ++VE N+D RKQLL+YDDV QR IY Sbjct: 602 RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYS 661 Query: 612 QRQEVMDSENLRSIIEGMMKSTIERAV-ALHTQEEIEEDWSIKGLVDYLNTNLLEEGDVK 670 QR E++D ++ I + + + + A + +EE W I GL + L + + + Sbjct: 662 QRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIA 721 Query: 671 E--EELRRLAPEEMSESIIAKLLERYNEREKLLPEEQTREFEKVVVFRVVDTKWTDHIDA 728 E ++ L E + E I+A+ +E Y +E+++ E R FEK V+ + +D+ W +H+ A Sbjct: 722 EWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAA 781 Query: 729 MDHLREGIHLRAYGQIDPLREYQMEGFAMFESMIASIEEEISRYIMKAEI---------- 778 MD+LR+GIHLR Y Q DP +EY+ E F+MF +M+ S++ E+ + K ++ Sbjct: 782 MDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELE 841 Query: 779 -EQNLERQEVVQGEAVHPSSDGEDAKKKPVVKGDQ--MGRNDLCKCGSGKKYKNCCG 832 ++ +E + + Q + + D A + + +GRND C CGSGKKYK C G Sbjct: 842 QQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHG 898
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 102 bits (257), Expect = 1e-27 Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 1/136 (0%) Query: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVMLPDTDGYE 60 ILV DD+++IR ++ L GY+V ++ D+++ DV++PD + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 61 LLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKK 120 LL ++ D+PVL+++A++ + + GA DY+ KPF+ ELI + K+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 KEVPLNHEVIGAGNLL 136 + L + L+ Sbjct: 125 RPSKLEDDSQDGMPLV 140
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 175 bits (445), Expect = 2e-54 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 44/344 (12%) Query: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI---------TEGAKFYNGDL 53 L+ G AG+IG H K+L++ G VV +DNL ++ ++ G +F+ DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 54 RDKEFLRDVFKQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVEKF 113 D+E + D+F + E V V S+E P Y ++N+ G L +LE K++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 114 IFSSTAATYGEVDVDLITEETKTN-PTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNV 172 +++S+++ YG + + + P + Y TK A E M H YS L R+F V Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 173 AGATPSGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVA 232 G P G RP+ L + G+ + YN G RD+ +++D+ Sbjct: 182 YG--PWG------RPDMALFKFTKAMLEGKSIDV------YN--YGKMKRDFTYIDDIAE 225 Query: 233 AHFLGLKDLQNGGESDF----------------YNLGNGNGFSVKEIVDAVREVTKHEIP 276 A + L+D+ ++ + YN+GN + + + + A+ + E Sbjct: 226 A-IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 277 AEMAPRRAGDPARLVASSQKAKEKLGWNPEYVNVKTIIEHAWDW 320 M P + GD A ++ E +G+ PE VK +++ +W Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNW 327
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.5 bits (63), Expect = 0.040 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 17/108 (15%) Query: 19 VVSGKLYWNKKVANA--TGQTSEVTKTKAEVKDSGAKKE--EKKEEKKQDAKSSFNEAYA 74 +V L +NK VA+A TG EV K + +++ S K+E EK+ EKK ++KS Sbjct: 584 LVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSG-----N 638 Query: 75 KNLPDAVKEKLKKAAQDKKAVNLVIVGDEASSSEKDAWVAKFTANLEA 122 KN K + K A +K ++ EA+ +DA + NL+ Sbjct: 639 KN-----KMEAKAQANSQKDEIFALINKEAN---RDARAIAYAQNLKG 678
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 503 bits (1296), Expect = 0.0 Identities = 192/329 (58%), Positives = 242/329 (73%), Gaps = 12/329 (3%) Query: 11 TYLITGAAGFIGMHLSKKLLEMGCKVIGYDNLNDYYDISLKESRLNILNQYNNFTFHKAD 70 YL+TGAAGFIG H+SK+LLE G +V+G DNLNDYYD+SLK++RL +L F FHK D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKID 60 Query: 71 LTDKEYLEKLFNENNIHIVVNLAAQAGVRYSIENPDAYIQSNVVGFLNILEMCRHHKVEH 130 L D+E + LF + V + VRYS+ENP AY SN+ GFLNILE CRH+K++H Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 131 LLYASSSSVYGANKKIPFSTEDKVDNPVSLYAATKKSNELMAHTYSHLYNVPTTGLRFFT 190 LLYASSSSVYG N+K+PFST+D VD+PVSLYAATKK+NELMAHTYSHLY +P TGLRFFT Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 191 VYGPYGRPDMAYFSFTKAITEGKPIKVFNEGDMYRDFTYIDDIVDGIIKLLENSPVLNNK 250 VYGP+GRPDMA F FTKA+ EGK I V+N G M RDFTYIDDI + II+L + P + + Sbjct: 181 VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQ 240 Query: 251 -----------ELPYKVYNIGNNKPVKLLDFIQAIESAVGKEAVKEYYPMQPGDVYQTYA 299 PY+VYNIGN+ PV+L+D+IQA+E A+G EA K P+QPGDV +T A Sbjct: 241 WTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSA 300 Query: 300 DVSDLINDVGFKPDTPIQEGINKFVDWFK 328 D L +GF P+T +++G+ FV+W++ Sbjct: 301 DTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 476 bits (1226), Expect = e-172 Identities = 180/330 (54%), Positives = 244/330 (73%), Gaps = 5/330 (1%) Query: 1 MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVAIDRNSG----KVLAVGEEARSMVGRTP 56 MF+ D+ IDLGTAN LI+VKG+GIVLNEPSVVAI ++ V AVG +A+ M+GRTP Sbjct: 8 MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTP 67 Query: 57 GNIVAIRPLKDGVIADFEITEAMLKYFINKLDVKSFFS-KPRILICCPTNITSVEQKAIR 115 GNI AIRP+KDGVIADF +TE ML++FI ++ SF PR+L+C P T VE++AIR Sbjct: 68 GNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIR 127 Query: 116 EAAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSMGDIVTSSSI 175 E+A+ +G + VFL EEP AA+GAG+ + + +G+MVVDIGGGTT++AV+S+ +V SSS+ Sbjct: 128 ESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSV 187 Query: 176 KMAGDKFDMEILNYVKRKYKLLIGERTSENIKIKVGTVFPGARSEELEIRGRDMVTGLPR 235 ++ GD+FD I+NYV+R Y LIGE T+E IK ++G+ +PG E+E+RGR++ G+PR Sbjct: 188 RIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPR 247 Query: 236 TITVCSEEITEALKEDAAIIVQAAKGVLERTPPELSADIIDRGVILTGGGALLHGIDMLL 295 T+ S EI EAL+E IV A LE+ PPEL++DI +RG++LTGGGALL +D LL Sbjct: 248 GFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL 307 Query: 296 AEELKVPVLIAENPMQCVAIGTGIMLENID 325 EE +PV++AE+P+ CVA G G LE ID Sbjct: 308 MEETGIPVVVAEDPLTCVARGGGKALEMID 337
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 1e-05 Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 25/229 (10%) Query: 16 ARHAKEEARKRL-AAKHGAEMSKLEGEHREKEKALPKDKGINVEEAKAKAAA-----AAK 69 R +EA+ + A E+++ E +E + K+ +E KAK K Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 70 AAALAKQKREGSEEVTDEERAKAKAKAAAAAKAKAAVLAKQ----------KREGSEEVT 119 + K+E SE V + + K + + VT Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 120 ---------DEEKAKAKAKAAAAAKAKAAALAKQKREGSEEVTDEEKAKAKAKAAAAAKA 170 + A + + + + + ++ Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244 Query: 171 KAAALAKQKREGSEEVTDEEKAKAKAKAAAAAKAKAAALAKQKREGSEE 219 AL + V + +AKA+ A KA + +++ + + Sbjct: 1245 STVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293 Score = 38.5 bits (89), Expect = 6e-05 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 11/151 (7%) Query: 178 QKREGSEEVTDEEKAKAKAKAAAAAKAKAAALAKQKREGSEEVTDEEKVKAKAKAAAAAK 237 +KR + + T+ + + +A+ + A +K Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 238 AKAAVLAKQKREGLEEVTDEEKVKAKAKAAAAAKAKAAALAKQKASQGEGDSGDEKAKAI 297 ++ + K +++ E +V +AK+ A + +A+ + E + + K A Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 298 AAAKAKAAAAARAKGSVNKIEDELQQEEPSV 328 + KA K+E E QE P V Sbjct: 1106 VEKEEKA-----------KVETEKTQEVPKV 1125
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.003 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 49 TNEIDAAERSNAEAKKLVEEQREMLKQSRVEAQELIERAKKQAVDQKDVIVAAAKEEAES 108 TNE+ +S +E K+ + + E + +E K Q V + V+ +E++E+ Sbjct: 1082 TNEVA---QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138 Query: 109 IKTSAVQEIQREKEQAIAALQEQ 131 ++ A E RE + + + Q Sbjct: 1139 VQPQA--EPARENDPTVNIKEPQ 1159 Score = 28.9 bits (64), Expect = 0.012 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 53 DAAERSNAEAKKLVEEQREMLKQSRVEAQELIERAKKQAVDQKDVIVAAAKEEAESIKTS 112 + +++ + +K ++ E Q+R A+E ++ +A Q + + + E E+ T Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKE--AKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 113 AVQEIQREKEQAIAALQEQVASLSVHIASKVIEKELKEEDQVK 155 + EKE+ E+ + + ++E E Q + Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 2e-04 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 178 ESPEEGEVKEQDEEVVDVPEKKEGKVKETKVVKPEKAEKVTAQEKKVVKHETQVEEQPVK 237 S V E ++ EK E ET E A+ + K VK TQ E Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK----EAKSNVKANTQTNEVAQS 1088 Query: 238 KVETKTVEKVEKPVEQKQEKQNEYVTVEEEEKPEV 272 ETK + E EK+ E VE E+ EV Sbjct: 1089 GSETKETQTTETKETATVEKE-EKAKVETEKTQEV 1122 Score = 32.7 bits (74), Expect = 0.002 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 1/105 (0%) Query: 167 AVRKEEHVVKAESPEEGEVKEQDEEVVDVPEKKEGKVKETKVVKPEKAEKVTAQEKKVVK 226 ++E V+ + E Q+ EV + +T V +E Q K Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT-ETK 1101 Query: 227 HETQVEEQPVKKVETKTVEKVEKPVEQKQEKQNEYVTVEEEEKPE 271 VE++ KVET+ ++V K Q KQ + TV+ + +P Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Score = 29.3 bits (65), Expect = 0.025 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 5/117 (4%) Query: 167 AVRKEEHVVKAESPEEGEVKEQDEEVVDVPEKKEGKVKETKVVKPEKAEKVTAQEKKVVK 226 V K E + + EV ++ + V + +V ++ + ++ E K Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKA-NTQTNEVAQSG----SETKETQTTETKETA 1104 Query: 227 HETQVEEQPVKKVETKTVEKVEKPVEQKQEKQNEYVTVEEEEKPEVKLFIVEAFTSL 283 + E+ V+ +T+ V KV V KQE+ E + ++ S Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 109 bits (275), Expect = 1e-31 Identities = 31/117 (26%), Positives = 56/117 (47%) Query: 3 GKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGI 62 IL+ DD IR +L++ + GY +N + + DLVV D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRDQLA 119 ++L +K+ + V++M+A +A + GA + KPFD+ E+ + LA Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.4 bits (159), Expect = 2e-15 Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 6/141 (4%) Query: 19 RREQMIKGAVQLFKQKGFPRTTTREIAKAAGFSIGTLYEYIRTKDDVLYLVCDSIYEHVK 78 R+ ++ A++LF Q+G T+ EIAKAAG + G +Y + + K D+ + + ++ Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 79 ERLEEV-VCTEKGSIESLKIAIMNYFKVMDELQEE---VLIMYQEVRFLPKESLPYVLEK 134 E E + L+ +++ + + + I++ + F+ + ++ ++ Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 135 EF--QMVGMFEDILEQCTENG 153 + E L+ C E Sbjct: 132 NLCLESYDRIEQTLKHCIEAK 152
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.0 bits (231), Expect = 3e-24 Identities = 39/219 (17%), Positives = 85/219 (38%), Gaps = 31/219 (14%) Query: 2 KIKVLLVDDHTVVLKGLAFFLSTQEDFELVGEANNGKEALVKVGETSPDVVLMDLYMPEM 61 +L+ DD + L L ++ +++ +N + D+V+ D+ MP+ Sbjct: 3 GATILVADDDAAIRTVLNQAL-SRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGIEATACIKKEYPNVKVIVLTSFSDQAHVLPALKAGASGYILKDIEPDQLVEAIRSAYK 121 + + IKK P++ V+V+++ + + A + GA Y+ K + +L+ I Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG---- 116 Query: 122 GNIQLHPDIANALLSQTLPQEEKEEEPSVQVDVL--TARENEVLQLLAKGMSNKEIASVL 179 AL + E++ + ++ +A E+ ++LA+ M +++ Sbjct: 117 ----------RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD--LTLM 164 Query: 180 VITE----KTVKAHMSSILSKLH-LSDRTQAALYAVKNG 213 + E K + A LH R A+ Sbjct: 165 ITGESGTGKELVARA------LHDYGKRRNGPFVAINMA 197
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.005 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Query: 447 NVSKHA---NVREATIYFKVTEKNVSLEIVDQGNGFVE-KDIKEKKSLGMTTMRERVELV 502 N KH + I K T+ N ++ + + G + K+ KE G+ +RER++++ Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQML 325 Query: 503 GG---TIKIVSSKKRTSIKVNVP 522 G IK+ + + + V +P Sbjct: 326 YGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.1 bits (112), Expect = 3e-08 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 12/134 (8%) Query: 2 KILLIMEETEERRKLVENFTENIRNVECFEAKTGTESLLIMKKHTPDFVFLNSQLMDGTG 61 IL+ ++ R L + + + + D V + + D Sbjct: 5 TILVADDDAAIRTVLNQAL--SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 FEYSSLLREVNCYTKFIFIGE--DIEEAITAFRFQAFYYLLRPFREEDLQFILYKMGKEQ 119 F+ +++ + + AI A A+ YL +PF +L I+ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII------- 115 Query: 120 GEKAKSHLRKLPIE 133 +A + ++ P + Sbjct: 116 -GRALAEPKRRPSK 128
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 55.6 bits (134), Expect = 1e-10 Identities = 64/369 (17%), Positives = 132/369 (35%), Gaps = 13/369 (3%) Query: 7 ISKRKLLGIAGLGWLFDAMDVGMLSFVIVALQKDWGLSTQEMGWIG---SVNSIGMAVGA 63 + + L + DA+ +G++ V+ L +D S G ++ ++ A Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 64 LLFGILSDKIGRKSVFIITLLLFSIGSGLTALTTTFAMFLVLRFLIGMGLGGELPVASTL 123 + G LSD+ GR+ V +++L ++ + A + + R + G+ G VA Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAY 119 Query: 124 VSESVEAHERGKIVVLLESFWAGGWLIAALISYF---VIPKYGWEVAMVLSAVPALYALY 180 +++ + ER + + + + G + ++ P + A L+ + L + Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 181 LRWNLPDS-PRFQKVAKRPSVIENIKSVWSVEYRKATIMLWILWFCVVFSYYGMFLWLPS 239 L LP+S ++ +R ++ W+ ++ + + + LW+ Sbjct: 180 L---LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 240 VMVLKGFSLIK-SFQYVLIMTLAQLPGYFTAAWFIERLGRKFVLVTYLIGTACSAYVFGI 298 + L L RLG + L+ +I + Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF 296 Query: 299 ADSLTALIVAGMLLSFFNLGAWGALYAYTPEQYPTTIRGTGAGMAAAFGRIGGILGPLLV 358 A +LL+ +G AL A Q +G G AA + I+GPLL Sbjct: 297 ATRGWMAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLF 355 Query: 359 GYLVASQAS 367 + A+ + Sbjct: 356 TAIYAASIT 364 Score = 33.3 bits (76), Expect = 0.001 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 5/125 (4%) Query: 274 ERLGRKFVLVTYLIGTACSAYVFGIADSLTALIVAGMLLSFFNLGAWGALYAYTPEQYPT 333 +R GR+ VL+ L G A + A L L + G +++ AY + Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI-GRIVAGITGATGAVAGAYIADITDG 126 Query: 334 TIRGTGAG-MAAAFGRIGGILGPLLVGYLVASQASLSLIFTIFCGSILIGALAVVILGQE 392 R G M+A FG G + GP+L G + + L L E Sbjct: 127 DERARHFGFMSACFG-FGMVAGPVLGGLMGGFSPHAPFFAAAALN--GLNFLTGCFLLPE 183 Query: 393 TKQRE 397 + + E Sbjct: 184 SHKGE 188
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.4 bits (86), Expect = 1e-04 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Query: 289 LSEQNVAQQGQKEKEIKEKIKKEEKQHKVEKPEEKAKVEAEVKKELEKEQKKE 341 VAQ G + KE + KE VEK EEKAKVE E +E+ K + Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETAT--VEK-EEKAKVETEKTQEVPKVTSQV 1129
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.3 bits (84), Expect = 4e-04 Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 41/179 (22%) Query: 185 RKFAEVGARIPKGVLLVGPPGTGKTLLARAV---AGEAGVPFFS-----ISGSDFVEMFV 236 + + +++ G GTGK L+ARA+ PF + I Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELF 209 Query: 237 GV------GASRVRD-LFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLL 289 G GA FE A+ +F+DEI + L + Sbjct: 210 GHEKGAFTGAQTRSTGRFEQAEGGT---LFLDEIGDMPMDAQTRLLRVLQQG-------- 258 Query: 290 VEMDGFGANEGII----IIAATNRPDILDPALLRPGRFDRQITVDRPDVNGREAVLKVH 344 E G I I+AATN+ L + G F R D+ R V+ + Sbjct: 259 -EYTTVGGRTPIRSDVRIVAATNKD--L-KQSINQGLF-------REDLYYRLNVVPLR 306
>PF03309#Bvg accessory factor Length = 271 Score = 377 bits (970), Expect = e-135 Identities = 97/269 (36%), Positives = 163/269 (60%), Gaps = 12/269 (4%) Query: 1 MIFVLDVGNTNAVLGVF----EEGELRQHWRMETDRHKTEDEYGMLVKQLLEHEGLSFED 56 M+ +DV NT+ V+G+ + ++ Q WR+ T+ T DE + + L+ G E Sbjct: 1 MLLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLI---GDDAER 57 Query: 57 VKGIIVSSVVPPIMFALERMCEKYFKIKP-LVVGPGIKTGLNIKYENPREVGADRIVNAV 115 + G S VP ++ + M E+Y+ P +++ PG++TG+ + +NP+EVGADRIVN + Sbjct: 58 LTGASGLSTVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADRIVNCL 117 Query: 116 AGIHLYGSPLIIVDFGTATTYCYINEEKHYMGGVITPGIMISAEALYSRAAKLPRIEITK 175 A H YG+ I+VDFG++ ++ + ++GG I PG+ +S++A +R+A L R+E+T+ Sbjct: 118 AAYHKYGTAAIVVDFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTR 177 Query: 176 PGSVIGKNTVSAMQSGILYGYVGQVEGIVKRMKEEA----KQEPKVIATGGLAKLISEES 231 P SVIGKNTV MQ+G ++G+ G V+G+V R++++ + V+ATG A L+ + Sbjct: 178 PRSVIGKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPDL 237 Query: 232 NVIDIVDPFLTLKGLYMLYERNANLQHEK 260 ++ D LTL GL +++ERN Q K Sbjct: 238 RTVEHYDRHLTLDGLRLVFERNRANQRGK 266
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.040 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query: 191 ILYTPSLETGILNGITRAFIIKAAEELDIEVKEGFFTKDELLSADEVFVTNSIQEIVPL 249 IL P G + + +++ A+EL IEV+ + K+ +VF + ++++ L Sbjct: 50 ILLIPKDYKGQGSSLND--LVRTADELGIEVQ--YDEKNGTAITKQVF--GTAEKLIGL 102
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.010 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 152 ILMHNRDNMNYRNLMADMIADLYESIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRN 211 L + + +L+ + + E G R I +++ L+ +R+ Sbjct: 145 ALKGRPELAHLSHLVEQALVSMAEEQGETIVLGAR----ITPEAYRESQSGVNPLQPLRD 200 Query: 212 LEQLNVLGYPVL 223 + V+GY + Sbjct: 201 TYRDAVMGYQGI 212
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 8e-04 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 34 LVGKNGIGKSTLLRLLTGELIHDDGNIE 61 L G GIGKSTL+ L G D + + Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFD 628
>cloacin#Cloacin signature. Length = 551 Score = 27.4 bits (60), Expect = 0.006 Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 57 HDGGSHDCGGSFGGDSGGSCGGGGGGD 83 H+ G+H G+ G G GGG D Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGGGASD 35 Score = 25.8 bits (56), Expect = 0.022 Identities = 13/33 (39%), Positives = 15/33 (45%) Query: 50 GSDNDSSHDGGSHDCGGSFGGDSGGSCGGGGGG 82 GS + GGS G G+SGG G GG Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 83.9 bits (207), Expect = 2e-22 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 8/198 (4%) Query: 1 MRRSAEEIKKEIAYKAESLFSQKGYAATSMEEICEITERSKGSIYYHFKSKEELFLFVVK 60 ++ A+E ++ I A LFSQ+G ++TS+ EI + ++G+IY+HFK K +LF + + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 QHTYDWLEKWNEK-EKLYSTSTEKLYGLAEYYVEDIQQPISN----AIEEFSMSQVVSKE 115 + E E K L + + +E I V Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 116 ILDELLALT-RESYVMVEKLIEAGIQSGEFQED-DTRDLMYIVNGLLSGL-GVLYYELDY 172 ++ + ESY +E+ ++ I++ D TR I+ G +SGL + Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQS 184 Query: 173 KELKRIYKKAIDVLLKGM 190 +LK+ + + +LL+ Sbjct: 185 FDLKKEARDYVAILLEMY 202
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.7 bits (90), Expect = 3e-05 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 34 FIMERTNNDPVSVSL-LSVMEYAPIFIFSFIGGALADRWNPKRTMVAGDVLSVLSIVGIV 92 F +R + D ++ + L+ + I G +A R +R ++ G + I+ Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGY--IL 293 Query: 93 LLLKLDYWQAIFFATLISAIVGQFSQPSSSRIFKRYVKEEQVANAIAFNQTLQSLFMIFG 152 L W + F ++ G P+ + R V EE+ L SL I G Sbjct: 294 LAFATRGW--MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351 Query: 153 PVVGSLVYTQ 162 P++ + +Y Sbjct: 352 PLLFTAIYAA 361 Score = 33.6 bits (77), Expect = 0.001 Identities = 58/342 (16%), Positives = 122/342 (35%), Gaps = 22/342 (6%) Query: 58 FIFSFIGGALADRWNPKRTMVAGDVLSVLSIVGIVLLLKLDYWQAIFFATLISAIVGQFS 117 F + + GAL+DR+ + ++ + V ++ + ++ +++ I G + Sbjct: 57 FACAPVLGALSDRFGRRPVLLVS---LAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-T 112 Query: 118 QPSSSRIFKRYVKEEQVANAIAFNQTLQSLFMIFGPVVGSL---VYTQLGLFTSLYSLII 174 + ++ A F M+ GPV+G L F + + Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGL 172 Query: 175 LFLLSAIALSFLPKWVEQEQVARGSLKNDIKEGWKYVLHTKNLHMITITFTIMGLAVGLT 234 FL LP+ + E+ + +++ + + F IM L + Sbjct: 173 NFLTGCF---LLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 235 NPLEVFLVIERLGMEKEAVQYLAAADGI-GMLIGGIVAAVFASKVNPKKMFVFGMSILAM 293 L V +R + + AA GI L ++ A+++ ++ + GM Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 294 SFLVEGLSTSFWITSFMRFGTGICLACVNI---VVGTLMIQLVPENMIGRVNGTILPLFM 350 +++ +T W M F + LA I + ++ + V E G++ G++ L Sbjct: 290 GYILLAFATRGW----MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTS 345 Query: 351 GAMLIGTSLAGGLKEMTSLV---TVFCIAMALILFAIGPVLR 389 ++G L + + + AL L + P LR Sbjct: 346 LTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL-PALR 386
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 48.0 bits (114), Expect = 4e-08 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 3/158 (1%) Query: 264 DLGISATNLLIILFVTQIVACPFALLYGKLSETFTGKKMLYVGIIIYIIICTYAYFLKTT 323 D + + + +YGKLS+ K++L GIII + + Sbjct: 43 DFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSF 102 Query: 324 FDFWILAMLV-ATSQGGIQALSRSYFAKLVPKESANEFFGFYNIFGKFAAIMGPVLVGVT 382 F I+A + AL A+ +PKE+ + FG +GP + G+ Sbjct: 103 FSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMI 162 Query: 383 TQLTGKTNAGVLSIIVLFIIGGFLLTRVPENDTSVTPP 420 + +L I ++ II L ++ + + + Sbjct: 163 AHYIHWSY--LLLIPMITIITVPFLMKLLKKEVRIKGH 198
>cloacin#Cloacin signature. Length = 551 Score = 48.6 bits (115), Expect = 3e-08 Identities = 36/81 (44%), Positives = 41/81 (50%) Query: 231 SGGNGSGGNGSGGNGSGGNGSGGNGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSG 290 SGG+G G N + SG G G G G GSG S GGSGSG GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 291 SGGSGSGGSGSGGSGSGGSGS 311 G G G+ GGSG+GG+ S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 48.6 bits (115), Expect = 3e-08 Identities = 36/81 (44%), Positives = 41/81 (50%) Query: 226 SGGNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSG 285 SGG+G G N + SG G G G G GSG S GGSGSG GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 286 SGGSGSGGSGSGGSGSGGSGS 306 G G G+ GGSG+GG+ S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 48.2 bits (114), Expect = 3e-08 Identities = 36/81 (44%), Positives = 42/81 (51%) Query: 221 SGGNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGSGSGGSGSGGSGSGGSGSGGSG 280 SGG+G G N + SG G G G G +GSG S GGSGSG GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 281 SGGSGSGGSGSGGSGSGGSGS 301 G G G+ GGSG+GG+ S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 47.0 bits (111), Expect = 8e-08 Identities = 38/103 (36%), Positives = 47/103 (45%) Query: 211 SGGSGSGDNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGSGSGGSGSGGSG 270 SGG G G N + SG G G G G +GSG + GGSGSG GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 271 SGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSQG 313 G G G+ GGSG+GG+ S + G + G+G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 46.6 bits (110), Expect = 1e-07 Identities = 35/81 (43%), Positives = 42/81 (51%) Query: 166 SGDNGSGGNGSGGNGSGGNGSGGRGSGGNGSGGNGSGGSGSGGNGSGGSGSGDNGSGGNG 225 SG +G G N + SG G G G G +GSG S GGSGSG + GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 226 SGGNGSGGNGSGGNGSGGNGS 246 G G GN GG+G+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 46.6 bits (110), Expect = 1e-07 Identities = 34/80 (42%), Positives = 39/80 (48%) Query: 236 SGGNGSGGNGSGGNGSGGNGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSG 295 SGG+G G N + SG G +G G G GSG S GGSGSG GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 296 SGGSGSGGSGSGGSGSQGGN 315 G G G+ GGSG+ G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 46.2 bits (109), Expect = 1e-07 Identities = 35/81 (43%), Positives = 42/81 (51%) Query: 116 SGGNGSDGNGSGGNGSGDNGSGGNGSGGNGSGGNGSGGSGSGGNGSGGSGSGDNGSGGNG 175 SGG+G N + SG+ G G G G +GSG S GGSGSG + GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 176 SGGNGSGGNGSGGRGSGGNGS 196 G G GN GG G+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 46.2 bits (109), Expect = 2e-07 Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 2/116 (1%) Query: 176 SGGNGSGGNGSGGRGSGGNGSGGNGSGGSGSGGNGSGGSGSGDNGSGGNGSGGNGSGGNG 235 SGG+G G N G + GN +GG G G G + G S +N GG G GG Sbjct: 2 SGGDGRGHNT-GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 236 SGGNGSGGNGSGGNGSGGNGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGS 291 GNG GGNG+ G GSG G+ + + G G+GG S S + Sbjct: 61 GHGNG-GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 45.9 bits (108), Expect = 2e-07 Identities = 35/81 (43%), Positives = 43/81 (53%) Query: 156 SGGNGSGGSGSGDNGSGGNGSGGNGSGGNGSGGRGSGGNGSGGNGSGGSGSGGNGSGGSG 215 SGG+G G + + SG G G G G GSG + GGSGSG + GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 216 SGDNGSGGNGSGGNGSGGNGS 236 G+ G GN GG+G+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 45.9 bits (108), Expect = 2e-07 Identities = 33/81 (40%), Positives = 41/81 (50%) Query: 171 SGGNGSGGNGSGGNGSGGRGSGGNGSGGNGSGGSGSGGNGSGGSGSGDNGSGGNGSGGNG 230 SGG+G G N + SG G G G G GSG + G +GSG + GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 231 SGGNGSGGNGSGGNGSGGNGS 251 G G GN GG+G+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 45.1 bits (106), Expect = 3e-07 Identities = 34/81 (41%), Positives = 41/81 (50%) Query: 131 SGDNGSGGNGSGGNGSGGNGSGGSGSGGNGSGGSGSGDNGSGGNGSGGNGSGGNGSGGRG 190 SG +G G N + SG G +G G G GSG + GG+GSG + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 191 SGGNGSGGNGSGGSGSGGNGS 211 G G GN GGSG+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 45.1 bits (106), Expect = 3e-07 Identities = 37/109 (33%), Positives = 49/109 (44%) Query: 206 SGGNGSGGSGSGDNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGSGSGGSG 265 SGG+G G + + SG G G G G +GSG + GG+GSG GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 266 SGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSQGG 314 G G G+ GGSG+GG+ S + G + G+G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 43.9 bits (103), Expect = 7e-07 Identities = 32/81 (39%), Positives = 42/81 (51%) Query: 146 SGGNGSGGSGSGGNGSGGSGSGDNGSGGNGSGGNGSGGNGSGGRGSGGNGSGGNGSGGSG 205 SGG+G G + + SG G G G G +GSG + GG+GSG + GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 206 SGGNGSGGSGSGDNGSGGNGS 226 G G G+ G +G+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 43.5 bits (102), Expect = 9e-07 Identities = 34/81 (41%), Positives = 43/81 (53%) Query: 106 SGGNGSGGSGSGGNGSDGNGSGGNGSGDNGSGGNGSGGNGSGGNGSGGSGSGGNGSGGSG 165 SGG+G G + + S G G G G +GSG + GGSGSG + GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 166 SGDNGSGGNGSGGNGSGGNGS 186 G+ G GN GG+G+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 42.8 bits (100), Expect = 2e-06 Identities = 33/81 (40%), Positives = 41/81 (50%) Query: 81 SGGNGSGGSGSDGSGSDGNGSDGNGSGGNGSGGSGSGGNGSDGNGSGGNGSGDNGSGGNG 140 SGG+G G + S S G G G GSG + + GG+GSG + GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 141 SGGNGSGGNGSGGSGSGGNGS 161 G G GN GGSG+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 42.8 bits (100), Expect = 2e-06 Identities = 32/81 (39%), Positives = 39/81 (48%) Query: 101 SDGNGSGGNGSGGSGSGGNGSDGNGSGGNGSGDNGSGGNGSGGNGSGGNGSGGSGSGGNG 160 S G+G G N S SG G G G +GSG + GG+GSG GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 161 SGGSGSGDNGSGGNGSGGNGS 181 G G N GG+G+GGN S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 42.4 bits (99), Expect = 2e-06 Identities = 40/116 (34%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 191 SGGNGSGGNGSGGSGSGGNGSGGSGSGDNGSGGNGSGGNGSGGNGSGGNGSGGNGSGGNG 250 SGG+G G N S SG G +G G G +GSG S N G GSG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW--SSENNPWGGGSGSGIHWGGG 59 Query: 251 SGGNGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGSGGSGS 306 SG GG+G+ G GSG G+ + + G G+GG S S + Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 39.3 bits (91), Expect = 2e-05 Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 136 SGGNGSGGNGSGGNGSGGSGSGGNGSGGSGSGDNGSGGNGSGGNGSGGNGSGGRGSGGNG 195 SGG+G G N + SG G G G G +GSG S N GG G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW-SSENNPWGGGSGSGIHWGGGS 60 Query: 196 SGGNGSGGSGSGGNGSGGSGSGDNGSGGNGSGGNGSGGNGSGG 238 GNG G G+ G GSG G+ + G G+GG Sbjct: 61 GHGNGGGN-GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 38.2 bits (88), Expect = 5e-05 Identities = 27/68 (39%), Positives = 34/68 (50%) Query: 64 SGSGGNGSGGNGSGGSGSGGNGSGGSGSDGSGSDGNGSDGNGSGGNGSGGSGSGGNGSDG 123 S SG G G G G +GSG S + G+GS + GG+G G G GN G Sbjct: 15 STSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGG 74 Query: 124 NGSGGNGS 131 +G+GGN S Sbjct: 75 SGTGGNLS 82 Score = 36.6 bits (84), Expect = 2e-04 Identities = 37/85 (43%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Query: 246 SGGNGSGGNGSGGSGSGGSGSGGSGSGGSGSGGS-GSGGSGSGGSGSGGSGSGGSGSGGS 304 SGG+G G N G + G+ +GG G G G S GSG S GGSGSG GGS Sbjct: 2 SGGDGRGHNT-GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 305 GSGGSGSQGGNRVKGDSSSQGGNGS 329 G G G G + G S GGN S Sbjct: 61 GHGNGGGNGNS---GGGSGTGGNLS 82 Score = 34.7 bits (79), Expect = 6e-04 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Query: 66 SGGNGSGGNGSGGSGSGGNGSGGSGSDGSGSDGN---GSDGNGSGGNGSGGSGSGGNGSD 122 +G + + GN +GG G G G S G S+ N G G+G G G G+GG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN-- 68 Query: 123 GNGSGGNGSGDNGS 136 GN GG+G+G N S Sbjct: 69 GNSGGGSGTGGNLS 82 Score = 30.1 bits (67), Expect = 0.016 Identities = 28/64 (43%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 58 NGSQDDSGSGGNGSGGNGSGGSGSGGNGSGGSGSDGSGSDGNGSDGNGSGGNGSGGSGSG 117 NG G GG S +GSG S GGSGS G+G G GN GGSG+G Sbjct: 21 NGGPTGLGVGGGAS--DGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Query: 118 GNGS 121 GN S Sbjct: 79 GNLS 82
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.8 bits (108), Expect = 9e-07 Identities = 49/287 (17%), Positives = 93/287 (32%), Gaps = 26/287 (9%) Query: 705 QVPVYDLEGETIENIKLTSEGGTFNNGVMKWSTPGEKVYKFDLESDETSICFNGTVIQNI 764 ++ ++D +++ ++ G T + G K+ ++DL + E Sbjct: 939 ELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVN-GRYDLYNPE------------- 984 Query: 765 VEKEEVTEPTKEVEEI-KEEVKEPIKEVEETKEEVKEPVKEIEEIKEEVKEPVKEVEETK 823 VEK T T + + P + E V E P + E Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVP---SVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 824 EEVKEPVKEIEETKEEVKEPAKEVAGTKEEVKEPAK------EVAGTKEEVKEPVKEVEE 877 E K+ K +E+ +++ E + +E K K EVA + E KE + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 878 IKEEVKEPAKEVAGTKEEVKEPAKEVEEIKEEVKEEVKEPAKEVAGTKEEVKESATGLDQ 937 V++ K T++ + P + ++ + E +P E A + Q Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 938 EPKGNNQVGPVKVVGQ--ESAKEKDSNKRHANKQEENQKSLAATGGQ 982 + P K E + + N EN ++ Q Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Score = 41.2 bits (96), Expect = 2e-05 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 12/173 (6%) Query: 820 EETKEEVKEPVKEIEETKEEVKEPAKEVAGTKEEVKEPAKEVAGTKEEVKEPVKEVEEIK 879 + E V E P++ E K+ +K V +++ E + E+ Sbjct: 1010 VPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVA 1069 Query: 880 EEVKEPAK------EVAGTKEEVKEPAKEVEEIKEEVKEEVKEPAKEVAGTKEEVKESAT 933 +E K K EVA + E KE + E KE E +E AK +EV + + Sbjct: 1070 KEAKSNVKANTQTNEVAQSGSETKE--TQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 934 GLDQEPKGNNQVGPVKVVGQESAKEKDSNKRHANKQEENQKSLAATGGQANTP 986 + + + + V P E A+E D Q + + T Sbjct: 1128 QVSPKQEQSETVQP----QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Score = 38.5 bits (89), Expect = 2e-04 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 14/168 (8%) Query: 769 EVTEPTKEVEEIKEEVKEPIKEVEETKEEVKEPVKEIEEIKEEVKEPVKEVE-ETKEEVK 827 EV + E +E + + VE+ ++ E K E K + K+ + ET + Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 828 EPVKEIEETKEEVKEPAKEVAGTKEEVKEPAKEVAGTKEEVKEPVKE---VEEIKEEVKE 884 EP +E + +KEP + T + ++PAKE T V++PV E V V+ Sbjct: 1144 EPARE-NDPTVNIKEPQSQ-TNTTADTEQPAKE---TSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 885 PAKEVAGTKEEVKEPAKEVEEIKEEVKEEVKEPAKEVAGTKEEVKESA 932 P T + E + K + + V E S+ Sbjct: 1199 PENTTPATTQP-----TVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241 Score = 32.0 bits (72), Expect = 0.017 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 14/159 (8%) Query: 835 ETKEEVKEPAKEVAGTKEEVKEPAKEVAGTKEEVKEPVKEVEEIKEEVKEPAKEVAGTKE 894 E + + + + P+ + E V E P++ E Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVP---SNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 895 EVKEPAKEVEEIKEEVKEEVKEPAKEVAGTKEEVKESATGLDQEPKGNNQVGPVKVVGQE 954 K+ +K VE+ +++ E T + +E A K N Q V G E Sbjct: 1043 NSKQESKTVEKNEQDATE-----------TTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 955 SAKEKDSNKRHANKQEENQKSLAATGGQANTPTLLSGLA 993 + + + + + E+ +K+ T P + S ++ Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 750 bits (1936), Expect = 0.0 Identities = 413/912 (45%), Positives = 581/912 (63%), Gaps = 20/912 (2%) Query: 70 KVGDFSQRPASITKNSAVKQAKEGYSMADLNKMNDQELIETLGSIKWHQITDLFQFNEDA 129 +V + RP + + + + Y+ +LN+MN +L+E + +I + + DLF FN+ + Sbjct: 69 EVATDNNRPLGPSIAPSRARNNKIYTFDELNRMNYSDLVELIKTISYENVPDLFNFNDGS 128 Query: 130 KAFYKDNGKMQVIIDELAHRGSTFTKDDSKGIQTFTEVLRSAFYLAFYNNELSDLNERSF 189 F+ + ++Q II L G T+T DD KGI T E LR+ +YL FYN +LS LN Sbjct: 129 YTFFSNRDRVQAIIYGLEDSGRTYTADDDKGIPTLVEFLRAGYYLGFYNKQLSYLNTPQL 188 Query: 190 QDKCLPALKAIAKNPNFKLGTNEQDTVVSAYGKLISNASSDVETVQYASDILKQYNDNFN 249 +++CLPA+KAI N NF+LGT QD VV A G+LI NAS+D E + +L + DN + Sbjct: 189 KNECLPAMKAIQYNSNFRLGTKAQDGVVEALGRLIGNASADPEVINNCIYVLSDFKDNID 248 Query: 250 AYVDDRMKGQAVYDMMQGIDYDIQSYLNEARKE-ANETMWYGKVDGFINEINRIALL-NQ 307 Y + KG AV+++M+GIDY S + + A T +Y ++D ++ + + + ++ Sbjct: 249 KYGSNYSKGNAVFNLMKGIDYYTNSVIYNTKGYDAKNTEFYNRIDPYMERLESLCTIGDK 308 Query: 308 VTPENKWLVNNGIYFASRLGKFHSNPNKGLEVVTQAMHMYPRLSEPYFVAVEQITTNYNG 367 + +N WLVNN +Y+ R+GKF +P+ + +AM YP LS Y A + N+ G Sbjct: 309 LNNDNAWLVNNALYYTGRMGKFREDPSISQRALERAMKEYPYLSYQYIEAANDLDLNFGG 368 Query: 368 KDYSGNTVDLEKIRKEGKEQYLPKTYTFDDGSIVFKTGDKVSEEKIKRLYWAAKEVKAQY 427 K+ SGN +D KI+ + +E+YLPKTYTFDDG V K GDKV+EEKIKRLYWA+KEVKAQ+ Sbjct: 369 KNSSGNDIDFNKIKADAREKYLPKTYTFDDGKFVVKAGDKVTEEKIKRLYWASKEVKAQF 428 Query: 428 HRVIGNDKALEQGNADDVLTIVIYNTPDEYQLNRQLYGYETNNGGIYIEETGTFFTYERT 487 RV+ NDKALE+GN DD+LT+VIYN+P+EY+LNR + G+ T+NGGIYIE GTFFTYERT Sbjct: 429 MRVVQNDKALEEGNPDDILTVVIYNSPEEYKLNRIINGFSTDNGGIYIENIGTFFTYERT 488 Query: 488 PEQSIYSLEELFRHEFTHYLQGRYEVPGLFGRGDMYQNERLTWFQEGNAEFFAGSTRTNN 547 PE+SIY+LEELFRHEFTHYLQGRY VPG++G+G+ YQ LTW++EG AEFFAGSTRT+ Sbjct: 489 PEESIYTLEELFRHEFTHYLQGRYVVPGMWGQGEFYQEGVLTWYEEGTAEFFAGSTRTDG 548 Query: 548 VVPRKSIISGLSSDPASRYTAERTLFAKYGSWDFYNYSFALQSYLYTHQFETFDKIQDLI 607 + PRKS+ GL+ D +R + L AKYGSWDFYNY FAL +Y+Y + F+K+ + I Sbjct: 549 IKPRKSVTQGLAYDRNNRMSLYGVLHAKYGSWDFYNYGFALSNYMYNNNMGMFNKMTNYI 608 Query: 608 RANDVGNYDTYRETLSKDSKLNKEYQEYMQQLIDNQDKYNVPEVADDYLAEHAPKALTEV 667 + NDV Y Y ++S D LN +YQ+YM L++N D +VP V+D+Y+ H K + E+ Sbjct: 609 KNNDVSGYKDYIASMSSDYGLNDKYQDYMDSLLNNIDNLDVPLVSDEYVNGHEAKDINEI 668 Query: 668 KKEISETLSMKDTKMTKHTSQFFNTFTLEGTFTGSVTKGESEDWKAMSKRVNEALEQLTQ 727 +I E ++KD SQFF T+ + GT+ G ++GE DWK M+ ++N+ L++L++ Sbjct: 669 TNDIKEVSNIKDLSSNVEKSQFFTTYDMRGTYVGGRSQGEENDWKDMNSKLNDILKELSK 728 Query: 728 KEWSGYKTVTAYFVNYRVNSSNEFEYDVVFHG----IAKDDRENKAPTVNVNGPYNGFVK 783 K W+GYKTVTAYFVN++V+ + + YDVVFHG D NK P + + V+ Sbjct: 729 KSWNGYKTVTAYFVNHKVDGNGNYVYDVVFHGMNTDTNTDVHVNKEPKAVIKSDSSVIVE 788 Query: 784 EGIQFKSDGSKDEDGKIVSYLWDFGDGRTSKEVNPVHAYEREGTYKVALVVKDDKGKESR 843 E I F SKDEDG+I +Y WDFGDG S E H Y + G Y+V L V D+ G Sbjct: 789 EEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHKYNKTGEYEVKLTVTDNNG--GI 846 Query: 844 SETTVTIKDGS------VTESEPNNRPEEANRIG-LNTTIKGSLIGGDHTDVYTFNVASA 896 + + IK + ESEPNN E+AN+I N +KG+L D++D Y F+VA Sbjct: 847 NTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDYSDKYYFDVAKK 906 Query: 897 KDIDISVLNEYGIGMTWVLHHESDMQNYAAYGQANGNHIEAK---FNAKPGKYYLYVYKY 953 ++ I++ N +G+TW L+ E D+ NY Y A GN +PG+YYL VY Y Sbjct: 907 GNVKITLNNLNSVGITWTLYKEGDLNNYVLY--ATGNDGTVLKGEKTLEPGRYYLSVYTY 964 Query: 954 DNGDGTYALSVK 965 DN GTY ++VK Sbjct: 965 DNQSGTYTVNVK 976 Score = 98.6 bits (245), Expect = 5e-23 Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 47/250 (18%) Query: 762 KDDRENKAPTVNVNGPYNGFVKEGIQFKSD----GSKDEDGKIVSYLWDF---------- 807 K + +N + P N F K KS+ G+ E+ Y +D Sbjct: 854 KVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDYSDKYYFDVAKKGNVKITL 913 Query: 808 ---------------GDGRT-SKEVNPVHAYEREGTYKVA-----LVVKDDKGKES---- 842 GD +G + L V + Sbjct: 914 NNLNSVGITWTLYKEGDLNNYVLYATGNDGTVLKGEKTLEPGRYYLSVYTYDNQSGTYTV 973 Query: 843 ------RSETTVTIKDGSVTESEPNNRPEEANRIGLNTTIKGSLIGGDHTDVYTFNVASA 896 ++E T KD ++ E E NN ++A ++ N+ I G+L D D+Y+ ++ + Sbjct: 974 NVKGNLKNEVKETAKD-AIKEVENNNDFDKAMKVDSNSKIVGTLSNDDLKDIYSIDIQNP 1032 Query: 897 KDIDISVLNEYGIGMTWVLHHESDMQNYAAYGQANGNHIEAKFNAKPGKYYLYVYKYDN- 955 D++I V N I M W+L+ D+ NY Y A+GN + PGKYYL VY+++N Sbjct: 1033 SDLNIVVENLDNIKMNWLLYSADDLSNYVDYANADGNKLSNTCKLNPGKYYLCVYQFENS 1092 Query: 956 GDGTYALSVK 965 G G Y ++++ Sbjct: 1093 GTGNYIVNLQ 1102
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.8 bits (95), Expect = 1e-05 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 12/194 (6%) Query: 201 QPQIAMVKRDATVANAEREKEARIEKARAEKEAKEAEYQRDAQIAEAEKHKELKVQSYKR 260 P + T AE K+ + E++A E Q EA+ + + Q+ + Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 261 DQEQARADADLSYELQQAKAQQGVTEEQMRVKIIEREKQIELEEKEIARREKQYDAEVKK 320 Q + E Q + ++ T E+ E + ++E E+ + + + ++ Sbjct: 1086 AQSGSETK-----ETQTTETKETATVEK------EEKAKVETEKTQEVPKVTSQVSPKQE 1134 Query: 321 KADADRYAVEQSAEAEKVKQMKKADADQYKIEAEARARAEEVRVEGLAKAEIEKAQGQAK 380 +++ + E + E + +K+ + A+ A+E Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTNT-TADTEQPAKETSSNVEQPVTESTTVNTGN 1193 Query: 381 AEVQKAQGTAEADV 394 + V+ + T A Sbjct: 1194 SVVENPENTTPATT 1207
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.041 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 19/105 (18%) Query: 426 ILGNLITNAFE-AIERNHEHNKKVRMFVTDIGEEILIEVEDSGQGVHDEIITSIFYKGFS 484 ++ L+ N + I + K+ + T + +EVE++G Sbjct: 259 LVQTLVENGIKHGIAQL-PQGGKILLKGTKDNGTVTLEVENTGSLALKN----------- 306 Query: 485 TKAGEKRGYGLAKVKELVEDLNG---SIAIEKGDLGGALFIIALP 526 E G GL V+E ++ L G I + + G ++ +P Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQ-GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 4e-18 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 4 GIEVLIVEDDIRIAEIHRRFTEKIEGFKVIGTATTGEQAKEWLEFVKPQLVLLDVYLPDM 63 G +L+ +DD I + + + G+ V + W+ LV+ DV +PD Sbjct: 3 GATILVADDDAAIRTVLNQALSR-AGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 64 QGTELVTYIRHNLHDTDIIMITAASETDVVRHALRGGVTDYIVKPLTFDR 113 +L+ I+ D +++++A + A G DY+ KP Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTE 110
>PF05272#Virulence-associated E family protein Length = 892 Score = 37.0 bits (85), Expect = 1e-04 Identities = 14/33 (42%), Positives = 16/33 (48%) Query: 33 VLVGPSGCGKSTLLRMLAGLEEISSGDLIINEH 65 VL G G GKSTL+ L GL+ S I Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 37.0 bits (85), Expect = 1e-04 Identities = 71/327 (21%), Positives = 119/327 (36%), Gaps = 43/327 (13%) Query: 131 IKKDKYDTSKLEKAITNYYSVDEKMYSMPFNSSTPVLIYNKDAFAKAGLDPEKAPQTYDE 190 I DK KL + + K+ + P LIYNKD P+T++E Sbjct: 105 ITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP-------NPPKTWEE 157 Query: 191 LKEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKDAAKKAVFNGK 250 + K+L K G + + + W L+A G ENG+ D V N Sbjct: 158 IPALDKELKAK-GKSALMFNLQEPYFTW---PLIAADGGYAFKYENGKYDIKDVGVDNAG 213 Query: 251 EGQKVFGMLDELNKAGALGKYGASWDDIRAAFQSGQVAMYLDSSAGVRDLIDASKFNVGV 310 + ++D + + AAF G+ AM ++ + ID SK N GV Sbjct: 214 AKAGLTFLVDLIKNKHM--NADTDYSIAEAAFNKGETAMTINGPWAWSN-IDTSKVNYGV 270 Query: 311 SYIPYPEDSKQN---GVVIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGY 367 + +P + GV+ G + N K L K ++ T G Sbjct: 271 TVLPTFKGQPSKPFVGVLSAGINAASPN--------------KELAKEFLENYLLTDEGL 316 Query: 368 FSINPD----AYNEPLVKEQYEKYPQLKVTVEQLQATKQSPATQGALISVFPESRDAVVK 423 ++N D A +E+ K P++ T+E Q +G ++ P+ Sbjct: 317 EAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQ--------KGEIMPNIPQMSAFWYA 368 Query: 424 ALEAMYDGKNSKEALDEAAKATDRAIS 450 A+ + + ++ +DEA K I+ Sbjct: 369 VRTAVINAASGRQTVDEALKDAQTRIT 395
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.3 bits (237), Expect = 6e-25 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60 +LV +D+A++ + Q L ++V N D ++ DV+MP+ + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARI-RALLRRSG 119 ++ +I+ + + PVL ++A+++ +K + G DY+ KPF EL I RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 SLTTQQTIRYKGIELFGKDKDIQ 142 + + G+ L G+ +Q Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQ 147
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 42/155 (27%) Query: 268 LLEEI--INPYKEI--ASYQEKAMILKVERDITFMGDRERIHQMMV------ILLDNAMK 317 L +E+ ++ Y ++ ++++ L+ E I I + V L++N +K Sbjct: 218 LADELTVVDSYLQLASIQFEDR---LQFENQIN-----PAIMDVQVPPMLVQTLVENGIK 269 Query: 318 Y----TNEDGHIQIDCTQTSNSIRIRVKDNGIGVKEEDIPNLFDRFYQGDKARSMSEGAG 373 + + G I + T+ + ++ + V++ G + E G Sbjct: 270 HGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK-----------------ESTG 312 Query: 374 LGLSIANWIVEKHYGK---ISVESKWGEGTCFEVI 405 GL ++ YG I + K G+ +I Sbjct: 313 TGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 1e-04 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 19/99 (19%) Query: 434 LIDNALEAVIHCKKKQVEVGIQYQ---NALTITVQDTGKGIEEDAVDALFTKGYSTKGDN 490 L++N ++ I + ++ ++ +T+ V++TG ++ ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------TKES 310 Query: 491 RGYGLYLVKESIQRINGE---IHISSLLGEGTTITIEIP 526 G GL V+E +Q + G I +S G + IP Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 2/105 (1%) Query: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVHAVNSVKEAIEVLERSRVDFILLDIFMPEET 61 +L+ +DD + + L + G V ++ + D ++ D+ MP+E Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPF 106 F+LL I+ ++ ++++SA + + KA + G DYL KPF Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 1e-05 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%) Query: 59 GAFKDGTLIGVATLETKPYVKQEHKAKIGSVYVSPKARGLGAGKALIKECLELAKSLEVE 118 + + IG + + A I + V+ R G G AL+ + +E AK Sbjct: 69 LYYLENNCIGRIKIRSN----WNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFC 124 Query: 119 QVMLDVVVGNDGAKKLYESLGFKTFGV 145 +ML+ N A Y F V Sbjct: 125 GLMLETQDINISACHFYAKHHFIIGAV 151
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 1e-24 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62 IL+ DD+ + +L+ LS GY ++ I D D+++ DV+MP+ + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121 +I++ ++P+++++A+N +K GA DY+ KPFD L+ I L K+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 D 122 Sbjct: 125 R 125
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 47.6 bits (113), Expect = 2e-09 Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 7/119 (5%) Query: 27 EAFSSSYEDVLKQENPVAAMAKRLSNPDKYTLGVFKDNDLIGIATLETKPFIKQEHKAKI 86 E FS Y KQ + K + +N+ IG + + A I Sbjct: 40 ERFSKPY---FKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSN----WNGYALI 92 Query: 87 GSVFVSPKARGLGAGRALIKAIIENADKLHVEQLMLDVVADNTAAKKLYESLGFQTYGV 145 + V+ R G G AL+ IE A + H LML+ N +A Y F V Sbjct: 93 EDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 29.6 bits (66), Expect = 0.015 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%) Query: 215 SKIGCEIVLSK---SAPTKLALQLAHDLGITVVGFIRNGSCNIYTHPE 259 SKI +I L K S P + +++DL T+ GF+R G YTHP+ Sbjct: 312 SKIPVKIELYKADISYPYEFKADVSYDL--TLSGFLRWGGNAWYTHPD 357
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 95.8 bits (238), Expect = 6e-25 Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 27/255 (10%) Query: 58 NPKRVVILTNEGTEALLELGVKPVGAV-----KSWTGDPWYPHIKDKMKDVKVVGDEGQV 112 +P R+V L E LL LG+ P G + W +P P V VG + Sbjct: 34 DPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLP------DSVIDVGLRTEP 87 Query: 113 NVETIASLKPDLIIGNKMRHEKVYEQLKAIAPTV---FSETLR--GEWKDNFTFYAKALN 167 N+E + +KP ++ + + E L IAP FS+ + + + T A LN Sbjct: 88 NLELLTEMKPSFMVWS-AGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLN 146 Query: 168 KEKEGQKVLANYEKRMKDLKGQLGDKVNQEISMVRFM-PGDVRIYHGDTFSGVILKELGF 226 + + LA YE ++ +K + + + + + + P + ++ ++ IL E G Sbjct: 147 LQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 227 KRPGDQNKDDFAERNVSKERISAM-DGDVLFYFTFDKGNEKKGSELEKEYINDPLFKNLN 285 + + VS +R++A D DVL FD N K L PL++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLC---FDHDNSKDMDALMA----TPLWQAMP 259 Query: 286 AVKNGKAYKVDDVIW 300 V+ G+ +V V W Sbjct: 260 FVRAGRFQRVPAV-W 273
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 33.2 bits (76), Expect = 0.001 Identities = 24/173 (13%), Positives = 65/173 (37%), Gaps = 16/173 (9%) Query: 100 GAAFFIVVAIVLFSVTSLSAFTWIAFL-------GAAVAAVLVFASSSLGKEGTTPLKLT 152 A + ++ +L ++ + + + L + ++ E Sbjct: 31 STALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPL 90 Query: 153 LAGVAISALFSSLTQGLLVLNEKAFE------EVLFWLAGSVQGRKL-EILQSVFPYLLI 205 L A+ A+ S + Q +++ +A + + + L E L+S+ +L+ Sbjct: 91 LTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLL 150 Query: 206 GWIASFMMAGKVNTLMMGEDVAKGLGQRTILMKSFVLLIIVLLSGGSVAVAGP 258 + ++ G + TL+ + G+ T L+ + ++V+ + G V ++ Sbjct: 151 SILIWIIIKGNLVTLL--QLPTCGIECITPLLGQILRQLMVICTVGFVVISIA 201
>BORPETOXINA#Bordetella pertussis toxin A subunit signature. Length = 269 Score = 29.4 bits (65), Expect = 0.021 Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 286 PHISRRLVGSFYGALLPVAAIIGAILVLAAD 316 P+ SRR V S G L+ +A +IGA + A+ Sbjct: 211 PYTSRRSVASIVGTLVRMAPVIGACMARQAE 241
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.1 bits (216), Expect = 1e-21 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 17/241 (7%) Query: 3 KILVTGSLGQIGSELVMKLRD----VYGASNVIA---TDIRETDSEVVTSGPFE--TLDV 53 K LVTG+ G IG + +L + V G N+ +++ E++ F+ +D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 54 TDGQKLHDIAKRNEVDTIIHLAALLSAT-AEKNPLFAWNLNMGGLVNALEAARELNCKFF 112 D + + D+ + + L+ + +NP + N+ G +N LE R + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 113 T-PSSIGAFGPSTPKDNTPQDTIQRPTTMYGVNKVAGELLCDYYHQKFGVDTRGVRFPGL 171 SS +G + + D++ P ++Y K A EL+ Y +G+ G+RF Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF--- 178 Query: 172 ISYVAPPGGGTTDYAVEIYYEAIKKGTYTSYIAEGTYM-DMMYMPDALQAIISLMEADPN 230 V P G D A+ + +A+ +G G D Y+ D +AII L + P+ Sbjct: 179 -FTVYGP-WGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 231 K 231 Sbjct: 237 A 237
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.0 bits (75), Expect = 2e-04 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 42 LYVMKEGEEVVGVAGLHVLGEDLAEVRSLVVSHTYAGKGIGRKLVNHVMNEAAKIKVNRV 101 ++ +G + A + + V+ Y KG+G L++ + A K N Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWA---KENHF 123 Query: 102 ISLTYETE--------FFQKCGF 116 L ET+ F+ K F Sbjct: 124 CGLMLETQDINISACHFYAKHHF 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 46.6 bits (110), Expect = 3e-08 Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 18/223 (8%) Query: 2 KYTVITGASSGIGYESALAFASRGKNLILV--ARRQAELEELKLKINEMHPE---LDVVI 56 K ITGA+ GIG A AS+G ++ V + E LK H E DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV-- 66 Query: 57 RRTDLSVTEEVYKFYESLQSFQIETWINNAGFGNFASIAEQNLNKIETMLHVNIEALTIL 116 R ++ E + + I +N AG I + + E VN + Sbjct: 67 -RDSAAIDEITARIEREMGPIDI--LVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 117 SSLFVRDYSMTAGTQLINVSSGGGYTIVADAVTYCATKFYVSAFTEGLSHELKEQGAKLQ 176 S + ++ V S Y ++K FT+ L EL E ++ Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN--IR 181 Query: 177 AKVLAPAATETEFAKRSFDIDEFQYDNVVPKFHTAKQMAQFML 219 +++P +TET+ + S DE + V+ + F Sbjct: 182 CNIVSPGSTETDM-QWSLWADENGAEQVIKGS-----LETFKT 218
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 27.3 bits (60), Expect = 0.013 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 12/87 (13%) Query: 3 TISEVAKLLGVSTHTLRYY--EKENILIANRDVNGNRLYEESHIKWLQFVMKL--KQTQM 58 ++ E+AK GV+ + ++ +K ++ ++E S + ++ K Sbjct: 33 SLGEIAKAAGVTRGAIYWHFKDKSDLFSE--------IWELSESNIGELELEYQAKFPGD 84 Query: 59 PIAKIREYARLYLEGEHTTEARLQLLE 85 P++ +RE LE T E R L+E Sbjct: 85 PLSVLREILIHVLESTVTEERRRLLME 111
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 77.7 bits (191), Expect = 4e-20 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 8/168 (4%) Query: 1 MNKKEKIVYAAIEVFQEKGVEKTKISDIVKLAGIAQGTFYLYFPSKLSVMPAIAEVMVEK 60 ++ I+ A+ +F ++GV T + +I K AG+ +G Y +F K + I E+ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 MILAVKEKVQNDSPFSSK-VEQVIDAVFTFIAEYREIQALMYAGLASTEHIKEWEAV--- 116 + E + +++ V + LM E + E V Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 117 ----YEPLYIWLSDFLSEAKESGEIRDSVHAERTAKLFIALVESAAEQ 160 Y + L E+ + + R A + + E Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 256 bits (655), Expect = 5e-84 Identities = 93/380 (24%), Positives = 170/380 (44%), Gaps = 15/380 (3%) Query: 12 LIILLSNIFIAFLGIGLIIPVMPSFMNDMNLTGK---TMGYLVAVFAMAQLITSPITGRW 68 LI++LS + + +GIGLI+PV+P + D+ + G L+A++A+ Q +P+ G Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 69 VDIYGRKKMIIIGLFIFGVSELLFGLGTDVWMLYAARVLGGISAAFIMPGVTAYVADITS 128 D +GR+ ++++ L V + +W+LY R++ GI+ A AY+ADIT Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADITD 125 Query: 129 IQERPKAMGYLSAAISTGFIIGPGIGGFIAEYGIRVPFFVAAVIAFVACVISIFILKEPL 188 ER + G++SA G + GP +GG + + PFF AA + + + F+L E Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 189 TKEE--LAEISANTKESSFIGDLKKSLNPMYAIAFIIVFVLAFGLSAYETVFSLFSDHKF 246 E L + N S + + A+ FI+ V ++ +F + +F Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP----AALWVIFGEDRF 241 Query: 247 GFTPKDIAAIITISSIFGVVVQVFMFGKLVDMFGEKVLIQICLIVGAVLAFVSTVVFNYW 306 + I + I + Q + G + GE+ + + +I + W Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 307 IVLLVTCFIFLAFDLLRPALTTFLSKAAGKE-QGFVAGMNSTYTSLGNIAGPAMGGILFD 365 + + + + + PAL LS+ +E QG + G + TSL +I GP + ++ Sbjct: 302 MAFPIM-VLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 366 ININYPYAFSGVVLIVGLGI 385 +I ++G I G + Sbjct: 361 ASITT---WNGWAWIAGAAL 377
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 2e-04 Identities = 25/102 (24%), Positives = 43/102 (42%) Query: 170 TKIGEEEKTAKSVTTAAKAQKNDAVTSQKVATEKNQKAETEKNQKAVTEKNQKTETEKNQ 229 T+ E +S T Q T+Q K K+ + N + +ET++ Q Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 230 KVVTEKNQKTETEKNQKVVTEKNQKVETGKNQDAFTFEKAKE 271 T++ E E+ KV TEK Q+V +Q + E+++ Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138 Score = 31.2 bits (70), Expect = 0.007 Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 6/142 (4%) Query: 170 TKIGEEEKTAKSVTTAAKAQKNDAVTSQKVATEKNQ---KAETEKNQKAVTEKNQK--TE 224 I + + S V AT AE K + EKN++ TE Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 225 TEKNQKVVTEKNQKTETEKNQKVVTEKNQKVETGKNQDAFTFEKAKEYIKNEYKEEYNYT 284 T + V ++ K+ + N + ET + Q T E A + + K E T Sbjct: 1061 TTAQNREVAKE-AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 285 LEDTQVENGKKYYQIRVRTTYK 306 E +V + Q + T Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQP 1141
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 78.5 bits (193), Expect = 2e-20 Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 7/194 (3%) Query: 2 AIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLIT 61 A + ++ I++ A + FS G +T++ ++AK A V +G IY FK+K +LF EI + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 62 EMKQVAENAIRSDIS-----FFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKE-VQE 115 + ++ E + L S + + LM + + +G VQ+ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 116 VMQQVDVEIVSVIQSYLEIAIEKGEISK-CDPEITAFIMLRLYVSLIFDWEKNHEPLEKE 174 + + +E I+ L+ IE + A IM L+ +W + + + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLK 188 Query: 175 KISELFELYLLKGL 188 K + + LL+ Sbjct: 189 KEARDYVAILLEMY 202
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 34.5 bits (79), Expect = 0.001 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 698 SIPYFILFSIVTSLAFISLIQCLVTAFGDA-GRFIAIITLIIQ--LTTSAGTFPLELIPK 754 S+ Y + +T LAF SL +VTA + FI TL+I L S FP++ +P Sbjct: 146 SLLYALPVIALTGLAFASL-GMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPI 204 Query: 755 YLQPFNAWLPMTYSVSGLKAVVSSGDFNFMWQNIGILMIFIVV 797 Q +LP+++S+ ++ ++ + Q++G L I+IV+ Sbjct: 205 VFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVI 247
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.004 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 11/97 (11%) Query: 15 PSIFGIFTSPTLQFKRMKNQRNILFPLALLMVLIIISSALMSWN-----------ALNNP 63 I +T + Q + NQ L ++ ++V + +++ SW+ + Sbjct: 852 AGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGV 911 Query: 64 ALSMFHDKTGFAVPKYITFFTTFGFSAVSGIVAILFA 100 L+ V + TT G SA + I+ + FA Sbjct: 912 LLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.0 bits (88), Expect = 6e-06 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 6/117 (5%) Query: 25 TTTKFFISSPNKLPNDIDSEREKIQTSSEKGNLYIVYEVDSKVVGFLVFKRYELERLRHA 84 T T+ S P D + + E + +Y +++ +G + + +A Sbjct: 36 TYTEERFSKP-YFKQYEDDDMDVSYVEEEGKAAF-LYYLENNCIGRIKIRS---NWNGYA 90 Query: 85 GTMGMGIREAYCNQGIGTKLIEFLISWAKGQKGLEKICLGVVSINDRAIKVYKRTGF 141 + + + Y +G+GT L+ I WAK + + L IN A Y + F Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAK-ENHFCGLMLETQDINISACHFYAKHHF 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 110 bits (277), Expect = 2e-30 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 1 MSKYNVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEM 60 M+ +LV DD++ +R ++ L GY+ N R + D VV D++MP+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGLSVCKEIRKT-SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 + + I+K D+P++ ++A+ + GA DY+ KPF ELI + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RYTKQEQQEE 129 ++ + E Sbjct: 121 EPKRRPSKLE 130
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 2e-04 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 32/188 (17%) Query: 275 EKVTQLIHKEAGRMQRLVHDLLD-----LAQLEGEHFPLKKQPIVFSQLIEDVLNTYELQ 329 + LI ++ + + ++ L + L L + +++ L +Q Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADE----LTVVDSYLQLASIQ 235 Query: 330 FVEKNLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIITLKQIDDYCEL 388 F ++ L+ +NP I+ V + +Q ++ N + + I Q G I++ + + L Sbjct: 236 FEDR-LQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 389 HIKDTGIGIDREHLENLGERFYRVDKARSRQHGGTGLGLAIVRQ-IVHIHDGEWR--IES 445 +++TG + TG GL VR+ + ++ E + + Sbjct: 295 EVENTGSLALKN------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSE 336 Query: 446 EKGKGTTV 453 ++GK + Sbjct: 337 KQGKVNAM 344
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.1 bits (67), Expect = 0.023 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%) Query: 88 KTKEDAAKYIQDVAKKKQAKKVVKSKSMVTEEISMNHALEEIGCEVLE--SDLGEYILQV 145 KT+++ K + K + K T+++ L++I +VLE S+LG I Sbjct: 53 KTEKEKFKDSINNLVKTEFTNETLDKIQQTQDL-----LKKIPKDVLEIYSELGGEIYFT 107 Query: 146 DNDPPSHIIAPALHKNRTQIRDVFKEK 172 D D H L + + EK Sbjct: 108 DIDLVEHKELQDLSEEEKNSMNSRGEK 134
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.9 bits (64), Expect = 0.018 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 50 LLEVFKK--QCTNIHTTVVETTNDRLREDIQKVIVENGGGPIILSADERFDSYGLTSLFK 107 L EV KK + T I TV D+L E +V G II A +RF Y + L Sbjct: 46 LAEVGKKFEKDTGIKVTVEHP--DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLA 103 Query: 108 EELPKQ 113 E P + Sbjct: 104 EITPDK 109
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 133 bits (337), Expect = 5e-40 Identities = 67/264 (25%), Positives = 124/264 (46%), Gaps = 35/264 (13%) Query: 13 YLYALLIGMVFGSFFMVIAMRVPV------------------------GESIITPRSYCH 48 + L ++ GSF V+ R+P+ +++ PRS C Sbjct: 16 FSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCP 75 Query: 49 YCKYTLQPKELIPIISFCIQKGRCTNCKSKISSLYIVFEFVTGSLFFLTVYVIGMERELI 108 +C + + E IP++S+ +GRC C++ IS+ Y + E +T L + + Sbjct: 76 HCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTL 135 Query: 109 IILSLFSLLLIISVTDLVYMLIPNCI---LIWFALLLILECIFVPLVTWTDSIVGSGVIF 165 L L +L+ ++ DL ML+P+ + L+W LL L FV L D+++G+ + Sbjct: 136 AALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLG---DAVIGAMAGY 192 Query: 166 ILLYCMQKIY-----PEGLGGGDIKLLSLLGFIVGLKGIFMILFLASCFSLCFFGAGIVL 220 ++L+ + + EG+G GD KLL+ LG +G + + ++L L+S I+L Sbjct: 193 LVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILL 252 Query: 221 KRMKKRSQIPFGPFISLGAICYML 244 + + IPFGP++++ +L Sbjct: 253 RNHHQSKPIPFGPYLAIAGWIALL 276
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 66.9 bits (163), Expect = 4e-15 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%) Query: 112 SIVIVDNLIFDTGDANVKPEAKEVISQLVGFFQSVPNP---IVVEGHTDSRPIHNENFPS 168 + +++F+ A +KPE + + QL ++ +VV G+TD N Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQG- 272 Query: 169 NWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVASN---------DSPQNWEKNR 219 LS RA +++ +LI + +++A G ++ PV N +R Sbjct: 273 ---LSERRAQSVVDYLIS-KGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDR 328 Query: 220 RVVIYIK 226 RV I +K Sbjct: 329 RVEIEVK 335
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 5e-22 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 4 KILVVDDAMFMRTMIKNLLKSNSEFEVIGEAENGVEAIQKYKELQPDIVTLDITMPEMDG 63 ILV DD +RT++ L + + N + D+V D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQAL--SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 LEALKEIMKIDSSAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQADRVIEA 115 + L I K V++ SA + A + GA D++ KPF +I Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 1e-04 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 53/136 (38%) Query: 385 LIRNAIDHGIETVENRRDAGKNETGTIKLEAFHSGNHVVIQITDDGNGIHKGKVLEKAIK 444 L+ N I HGI + G I L+ V +++ + G+ K Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALK--------- 305 Query: 445 NGVVTESEANKLTDREVFDLIFQPGFSTAEVVSDLSGRGVGLDVVKHTIHSLGG---HLI 501 + G GL V+ + L G + Sbjct: 306 --------------------------------NTKESTGTGLQNVRERLQMLYGTEAQIK 333 Query: 502 IDSEEGKGSTFRIELP 517 + ++GK + +P Sbjct: 334 LSEKQGKV-NAMVLIP 348
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 1e-05 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 10/224 (4%) Query: 13 PPQKEKGLEVQSKNENSSFDNTMRIENKKQPKTEKPKREEAPEEEKQEYILAKKTVTKEE 72 Q+ K +E ++ + + + + + + + E + T TKE Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 73 PIVKKEEK-KEEKKETEQLLLAVSEQMVAIEQLR-VQPELLYQYIQKIQALYKEYGNIKL 130 V+KEEK K E ++T+++ S+ EQ VQP+ KE Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ--SQ 1161 Query: 131 NELPAAELQQLQELFSNMNIKNAICLEDTMQMVLDKVTMPEQTLQVLKVVETETCNIAKK 190 A Q +E ++ N++ + T+ V PE T T + K Sbjct: 1162 TNTTADTEQPAKE--TSSNVEQPVTESTTVNTGNSVVENPENTTPA-TTQPTVNSESSNK 1218 Query: 191 QEESKEVELQKAESDDVKLELPEVDQLNDSSSAGAELLNKATGT 234 + ++ + E + S+ A +L + T Sbjct: 1219 PKNRHRRSVRSVPHNV---EPATTSSNDRSTVALCDLTSTNTNA 1259
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 40.3 bits (94), Expect = 1e-05 Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 5 LYTSITGMNATQNALSVTSNNIANAQTVGYKKQK 38 + +++G+NA Q AL+ SNNI++ GY +Q Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37 Score = 37.2 bits (86), Expect = 9e-05 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 335 GNYTATNTTGILALGASGQNGAGKIRGGAQEGANVDLSVEFVDLMLYQRGFQGNAKVIKI 394 GN TAT T A+ N ++ Q + V+L E+ +L +Q+ + NA+V++ Sbjct: 479 GNKTATLKT----SSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQT 534 Query: 395 SDEVLNEVVNL 405 ++ + + ++N+ Sbjct: 535 ANAIFDALINI 545
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 48.3 bits (115), Expect = 2e-08 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 176 IYIAEDSAMLRQILEETLSSAGYTKMNFFSNGAEALAQIEKLAKEQGEKMYEHIHLLITD 235 I +A+D A +R +L + LS AGY + A I L++TD Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSN-AATLWRWIAA----------GDGDLVVTD 54 Query: 236 IEMPKMDGHHLTKVIKDSEVMNQLPVIIFSSLITNELFHKGEAVGANAQVSKP-DIQELI 294 + MP + L IK + LPV++ S+ T K GA + KP D+ ELI Sbjct: 55 VVMPDENAFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 295 GLVDK 299 G++ + Sbjct: 113 GIIGR 117
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.7 bits (72), Expect = 0.003 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 1 MRILVLGAGG-VGGFFGGRLVEKGEDVTFL----------VRSKRKQQLEEKGLVIRSVN 49 M+ LV GA G +G RL+E G V + ++ R + L + G Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQF--HK 58 Query: 50 GDFSFQPKLVTKEDRTTPFDVIL 72 D + + +T + F+ + Sbjct: 59 IDLADRE-GMTDLFASGHFERVF 80
>PF05844#YopD protein Length = 295 Score = 29.6 bits (66), Expect = 0.018 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 22/145 (15%) Query: 182 SIKADEAI-KTLQGSSGDIVKLREDIKRIQGEIQAELTTILNRPQEIIKGSINIGKQVFT 240 +I ++ + K + G + I + + + E + + + Q ++ + F Sbjct: 148 AISQEKTLQKNIDGRNELIDAKMQALGKTSDEDRKIVGKVWAADQAQDSVALRAAGRAFE 207 Query: 241 ITNQTAQTKTIDFVSIGTLSNEIVNA------ADSQTREAALRIQQKQK----------- 283 N Q S ++N V A ++ E I Q QK Sbjct: 208 SRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQSQKQKVEDQMSFDA 267 Query: 284 ----ELLPLIQKLSQTESEATQITF 304 ++L LIQ+ +Q+ ++A + Sbjct: 268 GFMKDVLQLIQQYTQSHNQAWRAAA 292
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.6 bits (66), Expect = 0.027 Identities = 27/275 (9%), Positives = 65/275 (23%), Gaps = 6/275 (2%) Query: 92 VSSVDAALKGKVIQHQDTARGNAKQWLDVLKPQLISTNQNIINYNTKFQ-----NYYDTL 146 + D K + DT A ++ + + T+ K T Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 147 VAAVDAKDKATLTKGLTRLSSSINENKAQVDQLVEDLKKFRNKMTSDTQNFKGDANQITS 206 A + T T ++ + E +T G+ Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKV 299 Query: 207 ILASQDAGIPLLQNQITTYNEAISKYNAIIIGSSVATALGPIAIIGGAVVIATGAGTPLG 266 + L IT + + + + + + L Sbjct: 300 STTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLE 359 Query: 267 VALIAGGAAAVGGGTAGIVLAKKELDNAQAEIQKITGQVTTAQLEVAGLTNIKTQTEYLT 326 G + + A D + + T + + + + Sbjct: 360 ANNAVKGESKITVNGAEYTANAAG-DKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTA 418 Query: 327 NTIDTAITALQNISNQWYTMGSKYNSLLQNVDSIS 361 N + + +AL + ++G+ N + ++ Sbjct: 419 NPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLG 453
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.9 bits (64), Expect = 0.036 Identities = 45/326 (13%), Positives = 98/326 (30%), Gaps = 24/326 (7%) Query: 35 IKTLQESAKNYSLGPAGLQDVMAQTTSSIFAMDSYAKLIQNQQETDLSKISSINGNLRGN 94 TL+ + S L+D + T + + SKI + Sbjct: 66 NNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADL 125 Query: 95 --MIQHQKDAKINAAYWLNNMKPQIMKTDQNIIDYNNTFQAYYSDMLLAIDQKDSVKLKA 152 ++ + + + ++ + D + + D L+A Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNF--STADSAKIKTLEA 183 Query: 153 DLEKLYADILKNQNEVDVLLGNLKAFRDRMAKDTNSFKEDTNQLTAILASTNAGIPALEQ 212 + L A + + L F + + + + L A A + Sbjct: 184 EKAALEARQAELEKA----LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 213 QINTYNDSIKKSNDMVIAGGVLCVALITCLAGGPMIAIAKKDIANAEREIASLKNRISGA 272 + IK A L A +K + A + +I Sbjct: 240 FSTADSAKIKTLE-----------AEKAALE--ARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 273 QAEVAILTDVKNKTTNMTETIDAAITALQ---NISNQWYTVGAKYNNLLQNVKGISPEEF 329 +AE A L K + ++ ++A +L+ + S + + L+ IS Sbjct: 287 EAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR 346 Query: 330 TFIKEDLNTAKDSWKDVKDYTEKLHE 355 ++ DL+ ++++ K ++ +KL E Sbjct: 347 QSLRRDLDASREAKKQLEAEHQKLEE 372
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.0 bits (244), Expect = 8e-26 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 1/125 (0%) Query: 3 PKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIMMPNMDGF 62 IL+ DDD IR +++ L R G+ + R I ++ + D++MP+ + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 DLCYELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQ 121 DL ++K D+P+L+++A+ +K G DYL KPFD EL+ + L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 ITVSQ 126 S+ Sbjct: 124 RRPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 5e-05 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 26/105 (24%) Query: 255 LIHNSIKF----TPNGGMITIHLKEHKEFLEVSIHDTGIGISEEQKQHIFERFYKADSSR 310 L+ N IK P GG I + + + + + +TG + K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 311 NRAYGGSGLGLAIVKKVLDLHQGK---IKVESVEGNGTEFIVRIP 352 +G GL V++ L + G IK+ +G +V IP Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA-MVLIP 348
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (272), Expect = 6e-31 Identities = 65/208 (31%), Positives = 111/208 (53%) Query: 2 AELLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARSEENLKAVAKEVEAEGVKAVIA 61 A+ ++GK A ITGA +GIG AVA LA +G ++ + + E L+ V ++AE A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 62 TADVSSYEEVTTAIETLKNGLGSIDILINNAGISKFGKFLELEVADWEKIIQVNLMGVYY 121 ADV + ++ +G IDIL+N AG+ + G L +WE VN GV+ Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 122 ATRAALPSMIEQQSGDIINISSTAGQKGAPVTSAYSASKFGVLGLTESLAMEVRKHNIRV 181 A+R+ M++++SG I+ + S +AY++SK + T+ L +E+ ++NIR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 182 TALTPSTVATDMAVDLGLTDGNPDKVMQ 209 ++P + TDM L + ++V++ Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIK 210
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.4 bits (63), Expect = 0.039 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 176 FIRPPYGEILE--NQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSVILQ 233 I G++L NQ+ A V + +GV D N +S+ G LQ Sbjct: 200 MIDAADGKVLNKWNQMDEAKPGGAQPVAGTSTVGVGRGVLGDQKYINTTYSSYYGYYYLQ 259 Query: 234 HSTPGG 239 +T G Sbjct: 260 DNTRGS 265
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.003 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 2/116 (1%) Query: 10 PQQPLYPQHQEQRYAEQYEEQETQHQEPQYEQNPYATPQNQETEYPQNPYDTRPNYEYPQ 69 + E+ + E E + P+ + ET PQ + Sbjct: 1097 TTETKETATVEKE-EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 70 NPYVAQPSQEPQFQGNPYETQPQYQQNPYQQQMYQPNYDARVSPPKPPTIDPTQPQ 125 +Q + P + + P + ++ V P+ T TQP Sbjct: 1156 KEPQSQTNTTAD-TEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT 1210
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 27.9 bits (62), Expect = 0.033 Identities = 8/38 (21%), Positives = 19/38 (50%) Query: 57 LHDVADEKLNESEEAGMKKVSDWLEELRVEEEESKHVL 94 + D+ E L S K +S ++ E ++ + + ++L Sbjct: 72 IEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLL 109
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.030 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 23/125 (18%) Query: 513 EGEVREFLGSYTEYLEMEKTRELI-----------EKAEVQKEKKVVEEAPKQQRKRKLS 561 E E F +Y E KT++LI +K ++KEK+ E+A K Q+ ++ Sbjct: 109 EKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREK 168 Query: 562 YNEQREWETIEDTIAQLEEKLESIGEELTNVGSDFTKAQELSE-AGQKIEEELEKTMERW 620 E+R A+ LE++ ++N + + + LSE Q+ E EL++ MER Sbjct: 169 RKEER---------AKNRANLENLTNAMSN-PQNLSNNKNLSELIKQQRENELDQ-MERL 217 Query: 621 SELSD 625 ++ + Sbjct: 218 EDMQE 222
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.0 bits (184), Expect = 6e-19 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 13/201 (6%) Query: 3 RETRKKELKELIFLKAVQLFQERGYENVTVQDITTACGIAKGTFFNYFPKKENILLFLGD 62 + +E ++ I A++LF ++G + ++ +I A G+ +G + +F K ++ + + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 63 SQIELWNESLKTYENVEH--PKERIKLVLGDLLDRFTGHGELMKHAVFEIIKSNYLVENE 120 E Y+ P ++ +L +L+ T E + + EII E Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLE-STVTEERRR-LLMEIIFHKCEFVGE 122 Query: 121 LKSIQQLQ--------ESLSSIITTAKETGKLNSQWDINIITSTIMSTYFYTLMSQSLLN 172 + +QQ Q + + + E L + + Y LM L Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRG-YISGLMENWLFA 181 Query: 173 SNETNAKNILNQQLDVVWEGI 193 + K + ++ E Sbjct: 182 PQSFDLKKEARDYVAILLEMY 202
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 4e-07 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 8/195 (4%) Query: 206 MLGTKQVYLLFIMLFTSCMSGLYLIGMVKDIGVQLVGLSAATAANAVAMVAIFNTLGRI- 264 M + + ++ + + G+ LI V ++ + S A+ ++A++ + Sbjct: 1 MKPNRPLIVILSTVALDAV-GIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFAC 59 Query: 265 --ILGPLSDKIGRLKIVTGTFVAMAASVLVLSFVDLNYGIYFVCVASVAFCFGGNITIFP 322 +LG LSD+ GR ++ + A +++ + +Y + VA G + Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRI--VAGITGATGAVAG 117 Query: 323 AIVGDFYGMKNHSKNYGIVYQGFGFGALAGSFIGAVLGGFKP--TFMVIGVLCVVSFIIA 380 A + D ++++G + FGFG +AG +G ++GGF P F L ++F+ Sbjct: 118 AYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTG 177 Query: 381 LLIQVPKQKKEKEEE 395 + K E+ Sbjct: 178 CFLLPESHKGERRPL 192 Score = 35.6 bits (82), Expect = 3e-04 Identities = 50/317 (15%), Positives = 104/317 (32%), Gaps = 38/317 (11%) Query: 63 FASKLQEKWGLRKLIMIAGLALGIGLILSSQASSLLMLYVLAGVVVGYADGT-------- 114 L +++G R +++++ + + + A L +LY + +V G T Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLY-IGRIVAGITGATGAVAGAYI 120 Query: 115 AYITSLSNLIKWFPKRKGLIAGISVSAYGSGSLIFKYINAQLIESVGVSQAFIYWGLIVT 174 A IT + F G + +G G + + + F + Sbjct: 121 ADITDGDERARHF--------GFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNG 171 Query: 175 AMIVLGACLI---HQAADQGAVHETKTQEYTTKEMLGTKQVYLLFIMLFTSCMSGLYLIG 231 + G L+ H+ + E + + G V L + F + G Sbjct: 172 LNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAA 231 Query: 232 MVKDIGVQLVGLSAATAANAVAMVAIFNTLGRIIL-GPLSDKIGRLKIVTGTFVAMAASV 290 + G A T ++A I ++L + ++ GP++ ++G + + +A Sbjct: 232 LWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGY 291 Query: 291 LVLSFVDLNYGIYFVCVASVAFCFGGNITIFPAIVGDFYGMKNHSKNYGIVYQGFGFGAL 350 ++L+F + + PA+ S+ QG G+L Sbjct: 292 ILLAFATRGW-----MAFPIMVLLASGGIGMPALQAML------SRQVDEERQGQLQGSL 340 Query: 351 A-----GSFIGAVLGGF 362 A S +G +L Sbjct: 341 AALTSLTSIVGPLLFTA 357 Score = 35.6 bits (82), Expect = 3e-04 Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 7/151 (4%) Query: 8 PWLVVLGTVIVQMGLGTIYTWSLFNQPLVSKYGWSLNAVAITFSITSLSLA-FSTLFASK 66 L+ + ++ +G W +F + ++ W + I+ + + + + Sbjct: 213 AALMAVFFIMQLVGQVPAALWVIFGE---DRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 67 LQEKWGLRKLIMIAGLALGIGLILSSQASSLLMLYVLAGVVVGYADGT-AYITSLSNLIK 125 + + G R+ +M+ +A G G IL + A+ M + + ++ G A LS + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVD 329 Query: 126 WFPKRKGLIAGISVSAYGSGSLIFKYINAQL 156 +R+G + G + S++ + + Sbjct: 330 --EERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 330 bits (846), Expect = e-117 Identities = 163/260 (62%), Positives = 195/260 (75%) Query: 1 MNLGEFDGKTVLVTGAAQGIGSVVAKMFLERGATVIAVDQNEEGLNVFLNENELNETRMK 60 MN +GK +TGAAQGIG VA+ +GA + AVD N E L ++ + + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 61 TFHLDVSDSTAVEDMVNGIENDIAPIDILINVAGVLRMGPIHSLSDEDWNKTFSVNSTGV 120 F DV DS A++++ IE ++ PIDIL+NVAGVLR G IHSLSDE+W TFSVNSTGV Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 121 FYMSRAVSKHMMQRRSGAIVTVGSNAANTPRMEMAAYAASKAATTMFMKCLGLELAAYNI 180 F SR+VSK+MM RRSG+IVTVGSN A PR MAAYA+SKAA MF KCLGLELA YNI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 181 RCNLVSPGSTETEMQRLLWADENGAENIIAGSQNTYRLGIPLQKIAQPSEIAEAVLFLAS 240 RCN+VSPGSTET+MQ LWADENGAE +I GS T++ GIPL+K+A+PS+IA+AVLFL S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 241 DKASHITMHNLCVDGGATLG 260 +A HITMHNLCVDGGATLG Sbjct: 241 GQAGHITMHNLCVDGGATLG 260
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 393 bits (1010), Expect = e-140 Identities = 175/306 (57%), Positives = 234/306 (76%), Gaps = 9/306 (2%) Query: 1 MAIPSISVYKMPIESELPKNKVNWTPNPKRAVLLIHDMQEYFLDAYSDTESPKVELISNI 60 MAIP+I Y+MP S++P+NKV+W P+P RAVLLIHDMQ YF+DA++ SP EL +NI Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 KVIRERCKELGIPVVYTAQPGGQTLEQRGLLQDFWGDGIPAGPDKKKIVDELTPDEDDIF 120 + ++ +C +LGIPVVYTAQPG Q + R LL DFWG G+ +GP ++KI+ EL P++DD+ Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 121 LTKWRYSAFKKTNLLEILNEQGRDQLIICGIYAHIGCLLTACEAFMDGIQPFFVADAVAD 180 LTKWRYSAFK+TNLLE++ ++GRDQLII GIYAHIGCL+TACEAFM+ I+ FFV DAVAD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 181 FSLEHHKQALQYASNRCAVTTSTNLLLKDLQSLKGD---------ESEGITLQEVHELVA 231 FSLE H+ AL+YA+ RCA T T+ LL LQ+ D + T + + + +A Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240 Query: 232 QLLRESVESIEVDEDLLNRGLDSVRIMSLVEKWRREGKGITFADLAERPTVDDWYRLLSS 291 +LL+E+ E I EDLL+RGLDSVRIM+LVE+WRREG +TF +LAERPT+++W +LL++ Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLTT 300 Query: 292 QAAQVL 297 ++ QVL Sbjct: 301 RSQQVL 306
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 125 bits (315), Expect = 1e-33 Identities = 91/398 (22%), Positives = 173/398 (43%), Gaps = 14/398 (3%) Query: 20 FMAAMDATIVNVALQTISKELQVPPSAMGTVNVGYLVSLAIFLPISGWLGDRFGTKKVFL 79 F + ++ ++NV+L I+ + PP++ VN ++++ +I + G L D+ G K++ L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 80 TALFVFTIASALCGIANDITSLNIF-RIIQGAGGGLLTPVGMAMLFRTFSPEERPKISRF 138 + + S + + + SL I R IQGAG + M ++ R E R K Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 139 IVLPIAVAPAIGPIIGGFFVDQMSWRWAFYINLPFGIIALLFGLLFLAEHIEKSAGRFDS 198 I +A+ +GP IGG + W++ + +P I + L+ L + + G FD Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIH--WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 199 LGFVLSAPGFAMLIYALSQGPSKGWVSPEIISIGIAGIVLLTLFIIVELKVKQPMLDLRL 258 G +L + G + + IS I ++ +F+ KV P +D L Sbjct: 202 KGIILMSVGIVFFMLF---------TTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 259 LKEPVFRKMSLISLFSSAGLLGMLFIFPLMYQNVIGVSALESG-LTTFPEAIGLMISSQI 317 K F L + G + + P M ++V +S E G + FP + ++I I Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 318 VPWSYKKLGARKVISIGLVSTAVIFILLSFVNHDTNPWQIRALLFGIGIFLGQSVGAVQF 377 + G V++IG+ +V F+ SF+ T+ + ++F +G L + + Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTVIST 371 Query: 378 SAFNNIAPPSMGRATTIFNVQNRLGSAIGVAVLASILS 415 +++ G ++ N + L G+A++ +LS Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 38.5 bits (89), Expect = 1e-05 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 17/126 (13%) Query: 53 RARFIIGCVISRLVLGKVLSMSPVQVPIDRMCPVCKLQHGRPQLPEGMPQISVSHSGEWV 112 +A + G + + L + + + V D+ +P P+G+ S+SH Sbjct: 47 KAEHLAGRIAAVHALRE-VGVRTVPGMGDK---------RQPLWPDGLFG-SISHCATTA 95 Query: 113 VVAFTKSAPVGVDVEQMNPNVDVMKMAEGVLTDIE--IAQVMKLPDEQRLEGFLTYWTRK 170 + A +G+D+E++ ++A ++ E I Q LP L L + + K Sbjct: 96 L-AVISRQRIGIDIEKIMSQHTATELAPSIIDSDERQILQASLLPFPLALT--LAF-SAK 151 Query: 171 EAVLKA 176 E+V KA Sbjct: 152 ESVYKA 157
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 124 bits (312), Expect = 6e-41 Identities = 56/89 (62%), Positives = 74/89 (83%) Query: 2 NKTELVKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTGR 61 NK +L+ VA++ ++++KD++AAV +VF +++ L G+KVQLIGFG FEVRER+AR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 NPQTGEEI+I A KVPAFKAGK LK+AVK Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.011 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 36 LVGPSGSGKTTLIKMIAGINESTTGDVIVFNTNMPNLNEMKRIGYMAQADALYE--ELSA 93 L G G GK+TLI + G++ F+ ++ K YE E++A Sbjct: 601 LEGTGGIGKSTLINTLVGLD--------FFSDTHFDIGTGKDSYEQIAGIVAYELSEMTA 652 Query: 94 YENAD 98 + AD Sbjct: 653 FRRAD 657
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 51.5 bits (123), Expect = 1e-09 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 9/163 (5%) Query: 166 SFVRERLSGTLERLLSTPVRRWEIVLGYIIGFGIFAFIQSIIIVSFSVYILDLYVAGSIW 225 +F R T E +L T +R +IVLG + A + I + + Y Sbjct: 90 AFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALG--YTQW--L 145 Query: 226 LTLLITCMLSLTAL---TLGTFLSAYANNEFQMIQFIPLVIVPQVFFSG-LFPMESMNTW 281 L +++LT L +LG ++A A + I + LVI P +F SG +FP++ + Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIV 205 Query: 282 LQMLGKLFPLTYGADAMRQVMIRNQGFTEIALDLTVLLLFSLL 324 Q + PL++ D +R +M+ + ++ + L ++ ++ Sbjct: 206 FQTAARFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVI 247
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 84.3 bits (208), Expect = 3e-22 Identities = 32/182 (17%), Positives = 74/182 (40%), Gaps = 5/182 (2%) Query: 16 DKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLFAVVMPT 75 + E + IL+ A+ +F ++G +STS EIAK AGV G I+ ++K K DL + + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 76 LTKFAAPFFVQAFAKEIFKTEYESYEVLLRVIIQNRFEFAKKHFPMIKILIQEVPFQPEL 135 + + + +L ++++ ++ +++I+ + F E+ Sbjct: 67 ESNIGE--LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRL-LMEIIFHKCEFVGEM 123 Query: 136 KSEIQ--QLIETELLVHFKKLIAKFQEEGEIIELPPSSVLRLTLSAVLGLLLTRFLLLPE 193 Q + + E ++ + E + + + + + L+ +L P+ Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 194 EK 195 Sbjct: 184 SF 185
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 34.4 bits (79), Expect = 0.001 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 97 EEGIVFIGPSEEIITKMGSKIESRIAMQA--ADVPVVPGITTNIETAEEAIEIAKQIGYP 154 EGIV + P+EE + K + + A + P T + +E+A IG P Sbjct: 224 IEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKD----GAHVELAANIGTP 279 Query: 155 LMLKASAGGGGIGMQLMETE 174 + GG G+ L TE Sbjct: 280 KDVDGVLANGGEGIGLYRTE 299
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 1e-04 Identities = 13/30 (43%), Positives = 19/30 (63%) Query: 42 IVSEEAGTVMKINVQEGDFVNEGDVLLEIE 71 I E V +I V+EG+ V +GDVLL++ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 30.4 bits (68), Expect = 0.006 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 5/49 (10%) Query: 46 VGSGR-----VIIPFLEAGFKVDGIDYSPEMLDSCRMRCKERGLHPNLY 89 G+ + V G + +DY+PE L+ K H + Sbjct: 14 TGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 146 bits (369), Expect = 9e-41 Identities = 93/406 (22%), Positives = 166/406 (40%), Gaps = 16/406 (3%) Query: 19 ILMASMDNTIVVTAMGTIVGDLGGLENFV-WVVSAYMVAEMAGMPIFGKLSDMYGRKRFF 77 + ++ ++ ++ I D WV +A+M+ G ++GKLSD G KR Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 78 IFGLIVFMIGSALCGTAENITQLGIY-RAIQGIGGGALVPIAFTIVFDIFPPEKRGKMGG 136 +FG+I+ GS + + L I R IQG G A + +V P E RGK G Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 137 LFGAVFGLSSIFGPLLGAYITDYISWHWVFYINLPLGILALIFITLFYKESRVHREQKID 196 L G++ + GP +G I YI HW + + +P+ + + + + V + D Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFD 200 Query: 197 WFGAITLVGAVVCLMFALELGGQKYDWDSSFILSLFAGFAILVIAFIVIERKVEEPIISF 256 G I + +V M L Y S + + F+ RKV +P + Sbjct: 201 IKGIILMSVGIVFFM----LFTTSYSI------SFLIVSVLSFLIFVKHIRKVTDPFVDP 250 Query: 257 EMFKQRLFGMSTIIALCYGAAFMSATVYIPLFIQGVYG-GTATNSGLLLLPMMLGSVVTA 315 + K F + + +P ++ V+ TA +++ P + ++ Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310 Query: 316 QLGGFLTSKLSYRNIMIISAVIMLIGLFLLSTLTPETSRILLTIYMVIIGFGVGFSFSVL 375 +GG L + ++ I + + FL ++ ET+ +TI +V + G+ F+ +V+ Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVI 369 Query: 376 SMAAIHNFGMEQRGSATSTSNFIRSLGMTLGITIFGMIQRTGFQDQ 421 S + ++ G+ S NF L GI I G + DQ Sbjct: 370 STIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.004 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Query: 12 LELTGISYGQLYRWKRKNLIPEDWFVRKSTFTGQETFFPKEKILERIDKIQTM 64 L+ + G KNL P D R T G +K+L KI ++ Sbjct: 97 LDKADAALGPA-----KNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSL 144
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 71.4 bits (175), Expect = 9e-16 Identities = 61/321 (19%), Positives = 115/321 (35%), Gaps = 15/321 (4%) Query: 50 LLFGLQPLADIVFTLIAGGVTDKYGRKKIMLLGLLLQAFAVSGFVFAESVAFFALLY--V 107 +L L L + G ++D++GR+ ++L+ L AV + A + + L + Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAG--AAVDYAIMATAPFLWVLYIGRI 104 Query: 108 VNGIGRSLYIPAQRAQIADLTKEEQQAEIFAVLHTTGAIGSVIGPLIGAFFYTSHPEYLF 167 V GI + A IAD+T +++A F + G V GP++G P F Sbjct: 105 VAGITGAT-GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF 163 Query: 168 ILQGVALTLYAILVWTQLPETVPLRQSVNKTKEVYSPKQFISKHYAVFGLMVSTLPISFF 227 L + LPE+ + + + S +A +V+ L FF Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREA---LNPLASFRWARGMTVVAALMAVFF 220 Query: 228 YAQ-----TESNYRIFAESVFPNFLFILVFISTCKAIMEVMLQIFLV-KWSERFSMPKII 281 Q + + IF E F + I+ + Q + + R + + Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 282 VISYTCYTLAAIGYGYSTTIWSLFFTLLFLVIGQSIALNHLLRFVSQIAPSHRRGLYFSI 341 ++ I ++T W F ++ L G I + L +S+ R+G Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGS 339 Query: 342 YGIHWDISRTCGPFVGALLLS 362 ++ GP + + + Sbjct: 340 LAALTSLTSIVGPLLFTAIYA 360
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.9 bits (98), Expect = 3e-07 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 4 PKKEDPRTVRSREMFKNAVFSLLCENPSISSLTVQKVATKAGLNRTTFYLHYQDIQDLLD 63 +K +R+ + L + +SS ++ ++A AG+ R Y H++D DL Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQG-VSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 64 QITNEISNELSNKIADL 80 +I + + + Sbjct: 61 EIWELSESNIGELELEY 77
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 136 bits (343), Expect = 3e-37 Identities = 91/413 (22%), Positives = 180/413 (43%), Gaps = 14/413 (3%) Query: 13 ILIVLISGCFLSTLNQTLLNVAMSNLMEVFDVTAATVQWLSTGFMLINGVLVPITAFLMK 72 ILI L F S LN+ +LNV++ ++ F+ A+ W++T FML + + L Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 73 RFTTRQLFICSMLSLFIGTVLCACAMN-FGILLTGRMIQAVGAGIIMPLMMTVILYLYPS 131 + ++L + ++ G+V+ + F +L+ R IQ GA L+M V+ P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 132 EKRGSIMGTIGFAIIFAPAIAPTLSGFIIEYVSWRWLFIGFAPFVLIVIILALKYLMNVA 191 E RG G IG + + P + G I Y+ W +L + P + I+ + L L+ Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLL--IPMITIITVPFLMKLLKKE 192 Query: 192 ETTKAKLDIVSVILSTIGFGCIIFGFSSAGSKGWDHPVVITTIIIGIIVTTLFCLRQIKS 251 K DI +IL ++G + +S I+ +I+ ++ +F K Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTTSY---------SISFLIVSVLSFLIFVKHIRKV 243 Query: 252 SDPLLNLSVFKYKIFTLTSVINVLITMIMYADLILLPIYLQNGRGFTAFESG-LLLLPGA 310 +DP ++ + K F + + +I + + ++P +++ + E G +++ PG Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303 Query: 311 VINAFLSPITGKMFDKYGAKPLFIIGLICIIISMWGVIDLTESTTYMYLMVRTIILRIGL 370 + I G + D+ G + IG+ + +S TT ++ + + + GL Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLT-ASFLLETTSWFMTIIIVFVLGGL 362 Query: 371 SFISMPLNTAGLNALPRELGSHGSAVNNTVRQLAGAIGTAVIITVYTIQSTSH 423 SF ++T ++L ++ G ++ N L+ G A++ + +I Sbjct: 363 SFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 48.3 bits (115), Expect = 2e-07 Identities = 39/199 (19%), Positives = 80/199 (40%), Gaps = 20/199 (10%) Query: 170 FLTSSQEGVKKTEVISIIFILVVLIIV---FRSPVVPIISLLTVGVSYLISMGIIAHLVD 226 F+ S V KT +I+ + +V+ + R+ ++P I+ V V L + I+A Sbjct: 332 FVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIA---VPVVLLGTFAILAA--- 385 Query: 227 QFNFPFSNFTQVFVVVVLFGVGTDYNILLYTRFKEELSKQENAYL-ATKETFKSAGKTVL 285 F + + T +F +V+ G+ D I++ + + + + AT+++ ++ Sbjct: 386 -FGYSINTLT-MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALV 443 Query: 286 YSGIAVLIGFASLALAS---FKLYQSTS-AVAIGVAVLLLVLTTLNPFFMVLLGKGMFYP 341 + + F +A +Y+ S + +A+ +LV L P L K P Sbjct: 444 GIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK----P 499 Query: 342 VKTFKGHEDSRLWGFFAKN 360 V +G+F Sbjct: 500 VSAEHHENKGGFFGWFNTT 518 Score = 44.1 bits (104), Expect = 3e-06 Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 6/148 (4%) Query: 184 ISIIFILVVLIIVFRSPVVPIISLLTVGVSYLISMGIIAHLVDQFNFPFSNFTQVFVVVV 243 IS + + + L ++ S +P+ +L V + I ++A + FN + V ++ Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLG--IVGVLLAATL--FNQKNDVYFMV-GLLT 932 Query: 244 LFGVGTDYNILLYTRFKEELSKQ-ENAYLATKETFKSAGKTVLYSGIAVLIGFASLALAS 302 G+ IL+ K+ + K+ + AT + + +L + +A ++G LA+++ Sbjct: 933 TIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISN 992 Query: 303 FKLYQSTSAVAIGVAVLLLVLTTLNPFF 330 + +AV IGV ++ T L FF Sbjct: 993 GAGSGAQNAVGIGVMGGMVSATLLAIFF 1020
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 76.2 bits (187), Expect = 2e-19 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 18/191 (9%) Query: 1 MAKNKQED-------IFDAAIKLFAERGYDGTTIPMIAEKANVGAGTIYRYFENKEALVN 53 MA+ +++ I D A++LF+++G T++ IA+ A V G IY +F++K L + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 54 SLFSKSMLQLSETIKT---DFP--VEANIREQFSHTYNRLF-EFARNNVDAFLFT--NSH 105 ++ S + E FP + +RE H E R + +F Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 106 CDSYFLDEQSKKIFDDFIGFFMNIIEDGIEKGFLRP-LPIIALIIIVYQPLEKLIK--VM 162 + + + + + + ++ IE L L II+ + L++ + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 163 ATGQLEYSKEL 173 A + KE Sbjct: 181 APQSFDLKKEA 191
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 53.5 bits (128), Expect = 4e-10 Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 3/154 (1%) Query: 57 SKSITPEEKLAMDKKREEQQIAKEQEKKKKAEEKKIQQENEKKEKEENERKQKEAKEKKA 116 SK++ E+ A + + +++AKE + KA Q + E + Q ++ A Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKAN---TQTNEVAQSGSETKETQTTETKETA 1104 Query: 117 QEEAEVKVKKEAEEQQKQAELEKKKQEQQEKKAQEEAEAKVKKEAEEQQKLAQIEKEKEQ 176 E E K K E E+ Q+ ++ + +QE+ + +A+ +E + + + + + Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 177 PKTPATPNGTTADVNGGSYSKDAIKTTLNRLNDN 210 P T+ ++ T N + +N Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Score = 50.1 bits (119), Expect = 5e-09 Identities = 24/130 (18%), Positives = 57/130 (43%), Gaps = 4/130 (3%) Query: 64 EKLAMDKKREEQQIAKEQEKKKKAEEKKIQQENEKKEKEENERKQKEAKEKKAQ-EEAEV 122 E +A + K+E + + K ++ + + + E K + + E + ++ +E + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 123 KVKKEAEEQQKQAELEKKKQEQQEKKAQEEAEAKVKKEAEEQQKLAQIEKEKE---QPKT 179 KE +K+ + + + ++ QE + ++++E Q A+ +E + K Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 180 PATPNGTTAD 189 P + TTAD Sbjct: 1158 PQSQTNTTAD 1167 Score = 48.1 bits (114), Expect = 2e-08 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 15/120 (12%) Query: 81 QEKKKKAEEKKIQQENEKKEKEENERKQKEAKEKKAQEEAEVKVK---KEAEEQQKQAEL 137 + + AE K QE++ EK E + + A+ ++ +EA+ VK + E Q +E Sbjct: 1035 ETTETVAENSK--QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 138 EKKKQEQQEKKAQEEAEAKVKKEAEEQQKLAQIEKE----KEQPKT------PATPNGTT 187 ++ + + ++ A E E K K E E+ Q++ ++ + +EQ +T PA N T Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Score = 38.5 bits (89), Expect = 3e-05 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 9/123 (7%) Query: 67 AMDKKREEQQIAKEQEKKKKAEEKKIQQENEKKEKEENERKQKEAKEKKAQEEAEVKVKK 126 + + E + EK++KA+ E ++ +E + + K+ Q E V+ + Sbjct: 1092 TKETQTTETKETATVEKEEKAKV-------ETEKTQEVPKVTSQVSPKQEQSE-TVQPQA 1143 Query: 127 EAEEQQKQAELEKKKQEQQEKKAQEEAEAKVKKEAEEQQKLAQIEKEKEQPKTPATPNGT 186 E + K+ Q Q A E AK + + +Q + + P T Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAK-ETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 187 TAD 189 T Sbjct: 1203 TPA 1205 Score = 37.0 bits (85), Expect = 8e-05 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 11/165 (6%) Query: 30 ATRTRRRVLLITVPTILVSFIFASYFASKSITPEEKLAMDK---KREEQQIAKEQEKKKK 86 T R V + + S S T E + K E+++ AK + +K + Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 87 AEEKKIQQENEKKEKEENERKQKEAKEKKAQEEAEVKVKKEAEEQQKQAELEKKKQEQQE 146 K Q + K+E+ E + Q E + + V +K+ + A+ EQ Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEP---ARENDPTVNIKEPQSQTNTTAD-----TEQPA 1172 Query: 147 KKAQEEAEAKVKKEAEEQQKLAQIEKEKEQPKTPATPNGTTADVN 191 K+ E V + + +E + P + N Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 31.5 bits (71), Expect = 0.006 Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 31 PKPKNLPIAIVNEDQGVEIPNQPK 54 P+P PI+I + D G++IPN P+ Sbjct: 137 PQPTMSPISIADRDFGIDIPNIPQ 160
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.9 bits (155), Expect = 8e-15 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 14/195 (7%) Query: 12 RTKTAIRNALVELIEEKGFDAITVKDITTKANINRGTFYTHYQDKFDLMTKCQEEIMYEF 71 T+ I + + L ++G + ++ +I A + RG Y H++DK DL EI Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF----SEIWELS 66 Query: 72 SSIAKQRLPEVIADLGSSPSPTMPFILIASI-LEFLNENSDFMKAVLSPK----GDLSFQ 126 S + E A P + ILI + E + ++ K G+++ Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 127 TKLKD---FMWKTLFEDTNGPLINKENLL--VPSQYLASYMASAHIGVIQQWLNNGQKET 181 + + E T I + L + ++ A M G+++ WL Q Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186 Query: 182 PEEIARILSTIAVHG 196 ++ AR I + Sbjct: 187 LKKEARDYVAILLEM 201
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 65.2 bits (159), Expect = 6e-13 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 793 EEGDILVTAFTDPGWTPLFVS-IKGLVTEVGGLMTHGAVIAREYGLPAVVGVENATKLIK 851 EE I+ T L +KG T++GG +H A+++R +PAVVG + T+ I+ Sbjct: 155 EETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQ 214 Query: 852 DGQRIRVHGTEGYIEV 867 G + V G EG + V Sbjct: 215 HGDMVIVDGIEGIVIV 230
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 4e-23 Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 2/132 (1%) Query: 1 MQR-TILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPEL 59 M TIL+ +D+ +R ++ L GY+V + + L++ D+++P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 DGWAVCRRIRK-KSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIE 118 + + + RI+K + ++P+++++A+ + E GA DY+ KP+ L+ R + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 119 SRYSSTINVSTA 130 + Sbjct: 121 EPKRRPSKLEDD 132
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 27.6 bits (61), Expect = 0.008 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 47 AIEYFQKEKQLDVVITKVGVVGEIGYKVWIEGHELNNEQQKIDAIIDV 94 A+E+ E L + I GV I Y++W+ +E D++IDV Sbjct: 40 ALEWLPVELLLALGIVPYGVADTINYRLWV------SEPPLPDSVIDV 81
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.033 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 156 LMGTCFVLIAFFIQTNTITIESVLISIPIGILV-GAINMSNNIRDIEEDIKGGRKTLVIL 214 L+GT +L AF NT+T+ + + IG+LV AI + N+ + + K K Sbjct: 376 LLGTFAILAAFGYSINTLTM--FGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEK 433 Query: 215 LGRE--KAVVTLAVAFFIAYLWIAVI 238 + A+V +A+ ++ +A Sbjct: 434 SMSQIQGALVGIAMVLSAVFIPMAFF 459
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.017 Identities = 11/20 (55%), Positives = 12/20 (60%) Query: 327 LVGKNGTGKSTLLTILAGLQ 346 L G G GKSTL+ L GL Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 62.8 bits (152), Expect = 3e-13 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 14/196 (7%) Query: 28 EKKAEPKQEEQKEVAKQEEQKDVPKPEEKQAEPEQKP--------------QEEQKDKQE 73 E AE ++E K V K E+ + ++ E K E K+ Q Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 74 QKVEEKPKEEKAQEQPEVKKEEKPKEQPAANKQPEQQKVQEEKPQQPKAPEVKEEAKVVN 133 + +E EK ++ ++ + + + P+Q++ + +PQ A E + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 134 QPKETPKQEQKEDPNKEEKTIPTPVVPTPEPPKPVPVPKPQSKQVTISVKGNEGYLLGAK 193 +T E P KE + V + T + + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 194 KVDVQEGDTVYSVLQS 209 K + +V SV + Sbjct: 1218 KPKNRHRRSVRSVPHN 1233 Score = 52.0 bits (124), Expect = 1e-09 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 13/175 (7%) Query: 22 ETAVKPEKKAEPKQEEQKEVAKQEEQKDVPKPEEKQAEPEQKPQEEQKDKQE--QKVEEK 79 T + +E+A+ +E P +E + E K + + +K E+ Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD 1057 Query: 80 PKEEKAQEQPEVKKEEKPKEQPAANKQPE----QQKVQEEKPQQPKAP---EVKEEAKV- 131 E AQ EV KE K A + E + +E + + K E +E+AKV Sbjct: 1058 ATETTAQ-NREVAKEAKS-NVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115 Query: 132 VNQPKETPKQEQKEDPNKEE-KTIPTPVVPTPEPPKPVPVPKPQSKQVTISVKGN 185 + +E PK + P +E+ +T+ P E V + +PQS+ T + Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Score = 51.6 bits (123), Expect = 2e-09 Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 28/180 (15%) Query: 24 AVKPEKKAEPKQEEQKEVAKQEEQKDVPKPEEKQAEPEQKPQEEQKDKQEQKVEE----- 78 K KA + E + + ++ + E + + +E+ K + E+ E Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKET---QTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 79 --KPKEEKA---QEQPEVKKEEKPKE-----QPAANKQPEQQKVQEEKPQQPKAPEVKEE 128 PK+E++ Q Q E +E P Q N + ++ +E + P + Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 129 -AKVVNQPKETPKQEQKED---------PNKEEKTIPTPVVPTPEPPKPVPVPKPQSKQV 178 N E P+ NK + V P +P V Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Score = 47.8 bits (113), Expect = 2e-08 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 19/151 (12%) Query: 25 VKPEKKAEPKQEEQKEVAKQEEQKDVPKPEEKQAEPEQKPQEEQKDKQEQKVEEKPKEEK 84 V P + + +++ + +E P P + + V E K+E Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEA---PVPPPAPATPSETTETVAENSKQES 1048 Query: 85 AQEQPEVKKEEKPKEQPAANKQPEQQKVQEEKPQQPKAPEVKEEAKVVNQPKETPKQEQK 144 + K E+ E A N++ +E K + E A+ ++ KET E K Sbjct: 1049 KTVE---KNEQDATETTAQNRE----VAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 145 EDPNKE---------EKTIPTPVVPTPEPPK 166 E E EKT P V + PK Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132 Score = 46.6 bits (110), Expect = 5e-08 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 6/131 (4%) Query: 21 EETAVKPEKKAE--PKQEEQKEVAKQEEQKDVPKP----EEKQAEPEQKPQEEQKDKQEQ 74 E+T P+ ++ PKQE+ + V Q E P +E Q++ EQ K+ Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 75 KVEEKPKEEKAQEQPEVKKEEKPKEQPAANKQPEQQKVQEEKPQQPKAPEVKEEAKVVNQ 134 E+P E E P+ A QP KP+ V+ V Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Query: 135 PKETPKQEQKE 145 + Sbjct: 1237 ATTSSNDRSTV 1247
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 43.4 bits (102), Expect = 1e-06 Identities = 11/60 (18%), Positives = 16/60 (26%) Query: 154 EEPKPEEPKTEKPDGKPEEPKTEKPDGKPEEPKTEKPDGKPEEPKTEKPDGKPDGKPEDK 213 EP+ E + KP+ KP + + K D KP Sbjct: 64 PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123 Score = 42.3 bits (99), Expect = 3e-06 Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 11/97 (11%) Query: 153 VEEPKPEEPKT---------EKPDGKPEEPKTEKPDGKPEEPKTEKPDGKPEEPKTEKPD 203 +E P P +P + E P P+ EP E P P + KP Sbjct: 36 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 95 Query: 204 GKPDGKPEDKVTEQPKEE--KVEIPAAQLNEAISKTS 238 KP KP KV EQPK + VE A E + Sbjct: 96 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR 132
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 27.7 bits (61), Expect = 0.020 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Query: 12 EKELQICRQSFRSFGKKKQFYGKIATVKVKDD-NVLVKEGLQTLPE 56 KE+ +S + K+ +G++ TVKV DD NV E Q +PE Sbjct: 69 RKEVAPVHESKATGPKQDSCFGRMYTVKVNDDRNV---EITQAVPE 111
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 29.5 bits (66), Expect = 0.012 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 8 KIIADKRKEKGITQEELAAYIGITKASVSKWETGQ----SYPDITFVPLLASYFNISIDE 63 K + K I ++ I + +W+ G+ + DI + LL Y + ID Sbjct: 94 KKNSGDFKVIIIDGNNYKEWVDIPDFLIKRWQEGKMLDAWFSDILRLFLLCKYGGLWIDA 153 Query: 64 LICYTLQMEQEDIK 77 + ++ ++ Sbjct: 154 TVYMFDKVPNYIVE 167
>cloacin#Cloacin signature. Length = 551 Score = 28.9 bits (64), Expect = 0.016 Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 66 VQEGKDNNQAVKDKLDQAVKNTAEREKVLIKEKEALNKAQEEVKSADKHVKKIEDNK 122 V+ + N + + +L+QA ++ A ++ K + N + E+ +A+K + Sbjct: 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEI 372
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 40.7 bits (95), Expect = 4e-07 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 1 MKQKGFTLLEMLLVLFAISVLSVVTHFNVTSLHEKQKVEQFLKQFSNDILYMQQLAIKRQ 60 M+Q+GFTLLEM+L+L + V + + + + + L +F + ++QQ ++ Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQT-LARFEAQLRFVQQRGLQTG 59 Query: 61 QHYTLR 66 Q + + Sbjct: 60 QFFGVS 65
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 50.3 bits (120), Expect = 3e-11 Identities = 18/68 (26%), Positives = 39/68 (57%) Query: 1 MQNEEGFTLLEMLLVMVVITVLLLLIIPNVVTQRSSVQGKGCAAYVKSIEAQIQAYHLQH 60 + GFTLLE+++V+V+I VL L++PN++ + + + + ++E + Y L + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 61 NKIPSIEE 68 + P+ + Sbjct: 64 HHYPTTNQ 71
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 73.7 bits (181), Expect = 1e-16 Identities = 61/357 (17%), Positives = 154/357 (43%), Gaps = 26/357 (7%) Query: 4 FKRKWSLSDQALLCKRLSDLLEKGYSLLQALEFLQLQLPLGKKLQLQRMIEGLKN----G 59 K + S SD ALL ++L+ L+ L +AL+ + Q +K L +++ +++ G Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQ---SEKPHLSQLMAAVRSKVMEG 117 Query: 60 QSLHASFHQLMFHSEMLSYLFYA-----ERHGDISFALQQGSVLLYKKDKYRKDMMKVMR 114 SL + + L+ A E G + L + + ++ + R + + M Sbjct: 118 HSLADA---MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 115 YPMFLSFFLMIMLSVFNLILLPQFEMMYSSLRSTAPPLTEQILVAIKLLPYFIYMIVLIV 174 YP L+ + ++S+ +++P+ + ++ P T ++ + F ++L + Sbjct: 175 YPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLAL 234 Query: 175 ITGFSIYIFYFRKLPPTQKVKI---MIRIPLMKTFLILNHSHYFSTQLSGLLHGGLSVHE 231 + GF + R+ ++V ++ +PL+ ++ ++ LS L + + + Sbjct: 235 LAGFMAFRVMLRQ--EKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQ 292 Query: 232 ALTIMMKQNYHPFFQYEADRIERQLIAGEPLQSIIDKSGYYEKELSYIITHGQANGNLAN 291 A+ I + + ++ + G L ++++ + + ++I G+ +G L + Sbjct: 293 AMRISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDS 352 Query: 292 EL---GDYSELIIEKVEQKIKRMLFVIQPILFTCLGVIVILMYLAMIMPMFQMMNSI 345 L D + + ++ L + +P+L + +V+ + LA++ P+ Q+ + Sbjct: 353 MLERAADNQD---REFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.016 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 6/50 (12%) Query: 138 GLLVFTGPTGSGKTTTMYALLEVARKWQTRRIITLEDPVEQRKDGLLQIQ 187 +V G G GK+T + L V + + + KD QI Sbjct: 597 YSVVLEGTGGIGKSTLINTL--VGLDFFSDTHFDIGT----GKDSYEQIA 640
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.011 Identities = 31/226 (13%), Positives = 76/226 (33%), Gaps = 44/226 (19%) Query: 3 NTNLQAMIESAILAAFALIIDILPLSLKLPTGGSISFAMIPIFIIAYRWGFKIAF--LGG 60 + ++ + E+ +L + + + + L ++ ++ F I +G+ I + G Sbjct: 338 HEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG 397 Query: 61 LIWGLLQIVVGDAIIV-------------------------------TPTQTIIEYFVAF 89 ++ + ++V DAI+V + F+ Sbjct: 398 MVLAI-GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 90 AFI-GFAGLFYKPIQQTLMNNQRKKTIAYIIF-----ATFIGSLARYFWHFIAGIIFWG- 142 AF G G Y+ T+++ + +I AT + ++ G W Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFN 516 Query: 143 ---QYAPKGQSAVLYSLIVNGSTMLASFTLCTVLLILLFTTSPRLF 185 ++ + + ++ + L + L +++LF P F Sbjct: 517 TTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSF 562
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.040 Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 168 KPLEKKISEIREEKEKKKADQEPLVKEKKQVTQEQAAQERANQEQ 212 + E K + E++EK K + E + K +Q QE++ Q Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 2e-22 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 2/130 (1%) Query: 1 MSK-NILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPEL 59 M+ IL+ +D+ +R +L Y V + + DLV+ D+++P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 DGWSVCRRIRKT-SGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118 + + + RI+K +P+++++A+ + E GA DY+ KP+ L+ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 119 SRQASKKPLE 128 + LE Sbjct: 121 EPKRRPSKLE 130
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 5e-04 Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 2/109 (1%) Query: 24 ASTGTLTKEESAQMQQDKAKKEEAIKEQQKSEVEKKEAAQVQEKSDMAKKEEAIKAGQKN 83 + T E S Q + K E+ E E + A+ K++ E A + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 84 DTAKKEV-TPQVQEKEALAKKEAAIKAGQKNDAAKQEVAKQAVQGEKLP 131 +T E EKE AK E K + Q KQ P Sbjct: 1094 ETQTTETKETATVEKEEKAKVETE-KTQEVPKVTSQVSPKQEQSETVQP 1141
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 30.3 bits (68), Expect = 0.002 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 49 DVYYAVVDSDGEYEVKSK--GFGRWSYKFKGY-DESGKEQKIMLTTTKHLRIGAYLKIKS 105 D Y V GE ++ + G+G+W Y + E L+ G Y Sbjct: 53 DQTYMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDY 112 Query: 106 KRTYG 110 R YG Sbjct: 113 GRNYG 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 3e-23 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 1 MSKETILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKI 60 M+ TIL+ DD+ IR ++ L GY+V + + D L+V D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIHMCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLR 119 + + ++++ ++P++++SA+ M I GA DY+ KPF+ ELI I L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RY 121 Sbjct: 121 EP 122
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 0.009 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 41/213 (19%) Query: 116 SLIIGIAIGSVLSKLFLELLVSMMGLNLNVHFEVPMA----AIVDTAIIFFVIILYTSLQ 171 +LI IA+ VL F +++ G ++N M +VD AI+ Sbjct: 365 TLIPTIAVPVVLLGTFA--ILAAFGYSINTLTMFGMVLAIGLLVDDAIV----------- 411 Query: 172 GYRLIYRFKLIE-LFRAEREGEAMPK-------GSVIMALISVFLIGSGYFLALMFMKAV 223 ++E + R E + PK + AL+ + ++ S F+ + F Sbjct: 412 ---------VVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 224 ---MYANF-MAVALYILLATVLGTYLLFMFFTVFVLKRAR---NNKSSFYNGMNMVTTSQ 276 +Y F + + + L+ ++ L + + NK F+ N Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS 522 Query: 277 LLYRIKGNAKSLATISILSAVTLTAVGTSVTMY 309 + + K L + + V V ++ Sbjct: 523 VNHYTNSVGKILGSTGRYLLIYALIVAGMVVLF 555
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.003 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 41 GPSGSGKTTLLNVLSTIDNATDGEILI-DGKD 71 G G GK+TL+N L +D +D I GKD Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.4 bits (68), Expect = 5e-04 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Query: 9 ADPTRRKILD----LLKEG---DLTAGEIAEQFNMTKPSISHH 44 A TR+ ILD L + + GEIA+ +T+ +I H Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWH 51
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 3 KILIVEDDPNISSLLQSHIQKYGYDAVVAENFDDIMESFNAVKPHLVLLDVNLPKFDGFY 62 IL+ +DD I ++L + + GYD + N + A LV+ DV +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 WCRQIR-HESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRR 118 +I+ P++ +SA+ M I A E GA DY+ KPF ++ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 42.2 bits (99), Expect = 2e-06 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 23/113 (20%) Query: 216 DAKWLKFIIYQLMTNAVRY---SGERGKKVFLSAYRNGKDIILEVRDEGVGIPQEDVRRV 272 D + ++ L+ N +++ +G K+ L ++ + LEV + G + Sbjct: 252 DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT---- 307 Query: 273 FEPFYTGKNGRTFGESTGMGLYIVSK-ICDYLG--HSVKLDSEVGKGTTIKII 322 ESTG GL V + + G +KL + GK + +I Sbjct: 308 -------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 20/195 (10%) Query: 80 PTKGKVKDIAVKEGQEVEKGTKLFSYDNEEINLQMKQAE---LDQKMADMRYDQGKKKID 136 VK+I VKEG+ V KG L + + L ++ RY + I+ Sbjct: 102 IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE 161 Query: 137 SLKKEIKKVKDSGAGKEVTDPMEEQVSEL----------EMAQKTTDLEKEKGKLQ--KE 184 K K+ D + V++ +++ L + QK +L+K++ + Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA 221 Query: 185 ELSKKQKELTIYSNFTGVVQKLDKDAAQSSSQALGGQGK-----AFLQVASKDPFQVQGT 239 +++ + + + L A + L + K L+V Q++ Sbjct: 222 RINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESE 281 Query: 240 LTELQKSQIQKDQTF 254 + ++ Q F Sbjct: 282 ILSAKEEYQLVTQLF 296
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.4 bits (84), Expect = 2e-04 Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 11/163 (6%) Query: 48 FNLSTTYLVDEYGFSTTQIGLLGAVMAVVYGLSKFFMGNLSDKAFAQRFIAVGLFLSGLV 107 N+S + +++ + + + + G LSD+ +R + G+ ++ Sbjct: 33 LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFG 92 Query: 108 NICFGFASSFGMILTLLVLNGIVQGMGAPP----CSIVMTKWFSKKERGTKTGLWNISHN 163 ++ SF +LL++ +QG GA +V+ ++ K+ RG GL S Sbjct: 93 SVIGFVGHSF---FSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIG-SIV 148 Query: 164 VGGLLVPPFIGIGVGIFGESHWQGGVFIFPAIIVMVIAVLVWI 206 G V P IG G+ + + P I ++ + L+ + Sbjct: 149 AMGEGVGPAIG---GMIAHYIHWSYLLLIPMITIITVPFLMKL 188
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 1e-13 Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 2 KEKERLIIEMAMKLFATKGVNATSVQEIVTACGISKGAFYLYFKSKDELLLATLRYYYDK 61 +E + I+++A++LF+ +GV++TS+ EI A G+++GA Y +FK K +L Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 62 IQ 63 I Sbjct: 70 IG 71
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 666 bits (1719), Expect = 0.0 Identities = 234/1066 (21%), Positives = 458/1066 (42%), Gaps = 68/1066 (6%) Query: 4 LINFSLKNKFAVWLLTIIVTIAGIYSGMNMKLETIPDITTPIVTVTTVYPGATPEEVADK 63 + NF ++ W+L II+ +AG + + + + P I P V+V+ YPGA + V D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 ISKPMEEQLQNLSGVNVVSSSSYQNASS-IQVEYDFDKNMEKAETEIKESLANVK--LPE 120 +++ +E+ + + + +SS+S S I + + + + A+ +++ L LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 GVKDPKVSRVNF--NAFPVISLSVASKNESLAALTENVEKNVVPGLKGLDGVASVQIAGQ 178 V+ +S + V + + +++ V NV L L+GV VQ+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 179 QVDEVQLVFKKDKMKELGLSEDTVKNMIKGSDVSLPLGLYTFKDT------EKSVVVDGN 232 Q +++ D + + L+ V N +K + + G S++ Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 233 ITTIKALKELKIPAIPSSPNGQGSQNAGAGTQAPQMNPAAMNGIPTVTLEEIADIKEVGK 292 + ++ + + +G V L+++A ++ G+ Sbjct: 240 FKNPEEFGKVTLRV---NSDGS-----------------------VVRLKDVARVELGGE 273 Query: 293 A-ESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKDLEKKY-KDLEIISTFDQGAPI 350 I+R NGK A G+ I A AN +D A+K K+ +L+ + + ++++ +D + Sbjct: 274 NYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFV 333 Query: 351 EKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNIM 410 + S+ ++ + +++ LFL+N+R TLI +++P+ LL ++ ++N + Sbjct: 334 QLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTL 393 Query: 411 TLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTIA 470 T+ M +AIG +VDD+IVV+EN+ R M E+KL K+ ++ ++ ++ +V A Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVM--MEDKLPPKEATEKSMSQIQGALVGIAMVLSA 451 Query: 471 VFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHH-- 528 VF+P+ G G ++ F++TIV A+ S+LVA+ + P L +L K S E Sbjct: 452 VFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGF 511 Query: 529 ----EEKPSKLANGYKRILEWALNHKIITSSITVLLLVGSLALVPIIGVSFLPSEEEKMI 584 N Y + L I L++ G + L + SFLP E++ + Sbjct: 512 FGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVF 571 Query: 585 IATYKPEPGQTLDDVEKIATKAEKHFQDKKDVKTIQ--FSLGGENPMSPGQTNQAMFFVQ 642 + + G T + +K+ + ++ K + ++ F++ G + Q N M FV Sbjct: 572 LTMIQLPAGATQERTQKVLDQVTDYYL-KNEKANVESVFTVNGFSFSGQAQ-NAGMAFVS 629 Query: 643 YD--NDTKNFEKEKEQVVKDLQKMSGKGEWKN---------QDFGAGGGSNEIKLYVYGD 691 + E E V+ + GK + G G + + G Sbjct: 630 LKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGL 689 Query: 692 SSEEIKPVVKDIQNIMKKN-KDLKDIDSSVAKTYAEYTLVADQEKLSKMGLTAAQIGMGL 750 + + + + ++ L + + + A++ L DQEK +G++ + I + Sbjct: 690 GHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTI 749 Query: 751 SNQHDRPVLTTIKKDDKDINVYVETEKQNYETIDDLTNRKITTPLGNEVAVKDVMTVKEG 810 S + + +YV+ + + +D+ + + G V T Sbjct: 750 STALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWV 809 Query: 811 ETSNTVTHRDGRVYAEVSAKLTSDDVSK-ASAAVQKEVDKMDLPSGIDVSMGGVTQDIQE 869 S + +G E+ + S A A ++ K LP+GI G++ + Sbjct: 810 YGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERL 867 Query: 870 SFKQLGLAMLAAIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVALLISGETLSVSAM 929 S Q + + +V+ L + P +++ +P I+G L+A + + V M Sbjct: 868 SGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFM 927 Query: 930 IGALMLIGIVVTNAIVLIDRVIH-KENDGLSTREALLEAGTTRLRPILMTAIATIGALIP 988 +G L IG+ NAI++++ E +G EA L A RLRPILMT++A I ++P Sbjct: 928 VGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 989 LALGFEGSGLISKGLGVTVIGGLTSSTLLTLLIVPIVYEALSKFKK 1034 LA+ +G+ V+GG+ S+TLL + VP+ + + + K Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 6e-14 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 3 KVLVVDDEMLARDELKYLLEKTK-EVEIIGEADCVEDALEELMKNKPDIVFLDIQLSDDN 61 +LV DD+ R L L + +V I A + D+V D+ + D+N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNA---ATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GFEIANILKKMKNPPSIVFATAYDQY--ALQAFEVDALDYILKPFDEERIVQTLKKYKKQ 119 F++ +KK + ++ +A + + A++A E A DY+ KPFD ++ + + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 120 KQIKLETKQD 129 + + +D Sbjct: 122 PKRRPSKLED 131
>PF06580#Sensor histidine kinase Length = 349 Score = 224 bits (572), Expect = 3e-70 Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 13/216 (6%) Query: 359 QLELGEAELQSKLLQDAEIKALQAQINPHFLFNAINTVSALCRTDVEKARKLLLQLSVYF 418 Q E+ + ++ + Q+A++ AL+AQINPHF+FNA+N + AL D KAR++L LS Sbjct: 146 QAEIDQWKMA-SMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELM 204 Query: 419 RCNLQGARQLLIPLEQELNHVHAYLSLEQARFPNKYEVNMYIEEALKVTLVPPFVLQLLV 478 R +L+ + + L EL V +YL L +F ++ + I A+ VPP ++Q LV Sbjct: 205 RYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLV 264 Query: 479 ENALRHAFPKKQPVCQVEVHVFEKEGMVHFEVKDNGQGIESERLEQLGKMVVPSKKGTGT 538 EN ++H + ++ + + G V EV++ G + +K+ TGT Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL-----------ALKNTKESTGT 313 Query: 539 ALYNINERLIGLFGKETMLQIESELEQGTKILFVIP 574 L N+ ERL L+G E +++ + + ++ +IP Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV-LIP 348
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.1 bits (130), Expect = 5e-10 Identities = 77/418 (18%), Positives = 145/418 (34%), Gaps = 42/418 (10%) Query: 35 LDMLLLSFVLVYILKEFHLSPVEGGNLTLATTIGMLIGSYLFGFIADLFGRIRTMAFTIL 94 L+ ++L+ L I +F+ P + A + IG+ ++G ++D G R + F I+ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 95 LFSLATALIYFATDYWQLLIL-RFLVGMGVGGEFGIGMAIVTETWSKEMRAKATSVVALG 153 + + + + ++ LLI+ RF+ G G + M +V KE R KA ++ Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 154 WQFGVLVASLLPAFIVPHFGWRAVFLFGLIPALLAVYVRKSLSEPKIWEQKQRYKKELL- 212 G V + I + W + L +I + ++ K L + + K +L Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILM 207 Query: 213 -----------QKEAKGNLTTT-------EAEQLKQMKKFPLRKLFANKKVTITTIGLII 254 + L + K F L N I ++ Sbjct: 208 SVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMI----GVL 263 Query: 255 MSFIQNFGYYGIFTWMPTILANKYNYTLAKA-SGWMFISTIGMLIGIATFGILADKIGRR 313 I G + +P ++ + + + A+ S +F T+ ++I GIL D+ G Sbjct: 264 CGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPL 323 Query: 314 KTFTIYYVGGTIYCLIYFFL-FTDSTSLLWGSALLGFFANGMMGGFGAVLAENYPAEARS 372 +G T + + F T+ + + F + + + Sbjct: 324 YVL---NIGVTFLSVSFLTASFLLETTSWF--MTIIIVFVLGGLSFTKTVISTIVSSSLK 378 Query: 373 TAENFIFGTGRGL--------AGFGPVIIGLLAAGGNLMGALSLIFIIYPIGLVTMLL 422 E G G L G G I+G L + L L + + L + LL Sbjct: 379 QQEA---GAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLL 433
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 35.5 bits (82), Expect = 3e-04 Identities = 13/26 (50%), Positives = 17/26 (65%) Query: 3 KVLVLGGTRFFGKHLVEVLLQAGHEV 28 K LV G F G H+ + LL+AGH+V Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQV 27