>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.9 bits (72), Expect = 0.004 Identities = 20/91 (21%), Positives = 25/91 (27%) Query: 419 PPCPAPRATSPPESSAPSTASETPGQPSVTSSPASTTPPTPSASTTPTTTSGSTAATSTP 478 PP P PE P P + ++P Sbjct: 69 PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASP 128 Query: 479 PTGTSPAAPTSPTPTLTTSSPNVTALPPPPP 509 T+PA PTS T T TS P + P Sbjct: 129 FENTAPARPTSSTATAATSKPVTSVASGPRA 159
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.018 Identities = 14/55 (25%), Positives = 21/55 (38%) Query: 88 ADDSTLVLTDDYASTRHARLSQRGSEWYVEDLGSTNGTYLDRAKVTTAVRVPMGT 142 +D T +DY R + + S GTY D+ K VR+ G+ Sbjct: 154 TEDQTQKRREDYYMPRLDKFVTEVAPIEASTASSDAGTYNDQNKYPAFVRLGSGS 208
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.008 Identities = 15/30 (50%), Positives = 15/30 (50%) Query: 123 GGGGGGFGGGGGGGGGGGARQAPAQASSPA 152 GGG G GGG G GG A AP PA Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPA 94 Score = 28.5 bits (63), Expect = 0.013 Identities = 15/46 (32%), Positives = 19/46 (41%) Query: 123 GGGGGGFGGGGGGGGGGGARQAPAQASSPAGGDDPWGSAPASGSFG 168 G G G GG G GGG G + ++P P S P +G Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 28.5 bits (63), Expect = 0.016 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%) Query: 118 NKASRGGGGGGFGGGGGGGGGGGARQA-------PAQASSPAGG 154 GGG G GGG G GG + A PA ++ AGG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 41.2 bits (96), Expect = 9e-07 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 25/177 (14%) Query: 3 AVVVGSG-AVGAAVARTLRAHDHEVVSV-----------------GRTSGDYLADLTDIG 44 A + G+ +G AVARTL + + +V R + + AD+ D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 45 SLR----RLFEAIGEFAAVACAAGDVFPAQLEMSTDKQWTDSIAAKGRGQIDLVRAALPH 100 ++ R+ +G + AG + P + +D++W + + G + R+ + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 101 IADRGSFTLISGVLGEEITAACTIGA--TVNAMVEGFVVAAATEL-PRGIRINCVSP 154 + DR S ++++ ++ A + A F EL IR N VSP Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 3e-04 Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 520 RLQIEGLRVAKAERAQGLGTALVEWAHNYGRAHGAQLAQVTTDEARERARAFYRRLGY 577 IE + VAK R +G+GTAL+ A + + + + T + A FY + + Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.0 bits (163), Expect = 7e-16 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 5/152 (3%) Query: 17 STERKGQRTRRRILDAARAVFAEVGYERATIRGIAAAAGVDKSSIIKYFGTKQALFHEAV 76 T+++ Q TR+ ILD A +F++ G ++ IA AAGV + +I +F K LF E Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 77 HWD----IPVAELTTDDAGQTTENYARAMLTAWAADPNSPMAVLLRTSMTSEDAADILRR 132 + + R +L + L + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 133 HITAQGVDAVA-ATIDASDARLRAAVAGAILM 163 + Q + + D + L+ + +L Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 131 bits (331), Expect = 3e-35 Identities = 89/413 (21%), Positives = 173/413 (41%), Gaps = 23/413 (5%) Query: 47 ICVFASVAVNLANTAVSVAQRSLIVTFGSNQAVVAWTVTAYTLTEAAAIPLSGWAADRIG 106 +C+ + +V L ++V+ + F A W TA+ LT + + G +D++G Sbjct: 19 LCILSFFSV-LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLG 77 Query: 107 TKRLFMISVLGFTLGSVLCAVAPNIACLIIF-RAVQGGGGGILMPLVITILAREAGPNRL 165 KRL + ++ GSV+ V + L+I R +QG G LV+ ++AR Sbjct: 78 IKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENR 137 Query: 166 ARLMSVMGIPLLLGPMAGPILGGWLIDDYGWQWIFWINVPIGLITVALAAIAFPGDHTAP 225 + ++G + +G GP +GG + W ++ +P+ I + Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEVRI 195 Query: 226 SETLDIIGMLLLSPGLATFLYGLSTVPARGTVADRHVLIPATAGLVLMGAFVFHALYRAD 285 DI G++L+S G+ F+ T LI + ++ FV H + Sbjct: 196 KGHFDIKGIILMSVGIVFFMLFT-------TSYSISFLIVSVLSFLI---FVKHIR-KVT 244 Query: 286 RPLIDLRLFRNR--VVTVANATIVFVAAGFSGAVLLVPSYFQQLLRETPLQVG-IHMIPL 342 P +D L +N ++ V I+F +G V +VP + + + + ++G + + P Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGT--VAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 343 GLGAAVTIPTSSVLMDRHGAGKVVLGGVTLISVGMGTLAFGAAEHAAYVPTLLIGLTIVG 402 + + +L+DR G V+ GVT +SV T +F + ++ I + V Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFM---TIIIVFVL 359 Query: 403 MGIGSIMLQLTTVAVQTLAPHQIARGSTLVSVNQQLSASASTALMSVILTSQF 455 G+ ++T+ +L + G +L++ LS A++ +L+ Sbjct: 360 GGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 49.5 bits (118), Expect = 7e-08 Identities = 51/302 (16%), Positives = 98/302 (32%), Gaps = 51/302 (16%) Query: 153 IEAVRQILARTPP--PPGIKVYVTGPSALTADMSRTGDKSL--VIVTMI--SVLVIFTML 206 +A++ LA P P G+KV D + S+ V+ T+ +LV M Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYP------YDTTPFVQLSIHEVVKTLFEAIMLVFLVMY 356 Query: 207 LLVYRSIVTVTLLLITVGIELTAARGVVAFLAWHGVIGLSTYAINLLT----TMAIAAGT 262 L +++ + I V + L ++A G S IN LT +AI Sbjct: 357 L-FLQNMRATLIPTIAVPVVLLGTFAILAAF------GYS---INTLTMFGMVLAIGLLV 406 Query: 263 DYSIFIIGRYQEARQ-AGEDAETAFYTMYRGVAHVILGSGLTIAGA---MYCLTFTRMPY 318 D +I ++ + + A + ++G + ++ M + Sbjct: 407 DDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAI 466 Query: 319 FQSMGIPCAAGMLVAVVAALTMGPAVLAL-------------GSRFGLFDPKRKIKTRGW 365 ++ I + M ++V+ AL + PA+ A G FG F+ + Sbjct: 467 YRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHY 526 Query: 366 RRIGTAVVRWPAPILTATCAVSLVGLIALPGYQTNYDDQTYVPENIPANAGYAAANRHFP 425 ++ L ++A +++PE + G P Sbjct: 527 TNSVGKILGSTGRYLLI-----YALIVAGMVVLFLRLPSSFLPEE---DQGVFLTMIQLP 578 Query: 426 PS 427 Sbjct: 579 AG 580 Score = 48.7 bits (116), Expect = 1e-07 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 7/162 (4%) Query: 761 DLIIAGLSSLCLIFIIMLLITRGFVAALVIVGTVALSLGVSFGLSVLLWQHLLRIELHWL 820 +++ ++ L+F++M L + A L+ V + L +F + + + + + Sbjct: 339 EVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM 398 Query: 821 VLAMSVIVLLAVGSDYNLLLVSRLKEEVGAGIKTGIIRAMGGTGKVVTSAGLVFA---LT 877 VLA+ ++V A+ N V R+ E K ++M + +V + + Sbjct: 399 VLAIGLLVDDAIVVVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIP 455 Query: 878 MASMAVSDLIVIGQIGTTIGLGLLFDTLIVRSLMTPSIAALL 919 MA S + Q TI + L+ L TP++ A L Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALIL-TPALCATL 496 Score = 40.2 bits (94), Expect = 4e-05 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 15/213 (7%) Query: 145 GGPLANQSIEAVRQILAR--TPPPPGIKVYVTGPSALTADMSRTGDKSLVIVTMISVLVI 202 G S ++ + P GI TG ++ +G + IS +V+ Sbjct: 828 GEAAPGTSSGDAMALMENLASKLPAGIGYDWTG---MSYQERLSG-NQAPALVAISFVVV 883 Query: 203 FTMLLLVYRSIVTVTLLLITVGIELTAARGVVAFLAWHGVIGLSTYAINLLTTMAIAAGT 262 F L +Y S +++ V + + GV+ + + LLTT+ ++A Sbjct: 884 FLCLAALYESWSIPVSVMLVVPLGIV---GVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 263 DYSIFIIGRYQEARQA-GEDAETAFYTMYRGVAHVILGSGLTIAGAMYCLTFTRMP---Y 318 +I I+ ++ + G+ A R IL + L + L + Sbjct: 941 --AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 319 FQSMGIPCAAGMLVAVVAALTMGPAVLALGSRF 351 ++GI GM+ A + A+ P + R Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 57.9 bits (140), Expect = 1e-11 Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 20/167 (11%) Query: 4 RILVTGATGYLGSTILEALVRAGERAT----------ILVQPGDPHVMSPELRSNVDVVR 53 + LVTGA G++G + + L+ AG + + ++ +++ + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA---QPGFQFHK 58 Query: 54 GDITDAQSVDEAMR--GIARVYHLAGIASPNSRLAN--QIWRTNVLGAYHVAQSAWRHGV 109 D+ D + + + RV+ + L N +N+ G ++ + + + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 110 QRLVHVSSTAAIGYPPNGVIADEDFDPRDSVLDNVYSATKRAGEQLV 156 Q L++ SS++ G + +D L Y+ATK+A E + Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSL---YAATKKANELMA 162
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.3 bits (68), Expect = 0.013 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 8/104 (7%) Query: 370 EVLLPQNYQPPPNLAPPPGTVVGPDGNLVAVGPPLINPTPNLEDPNPPLPAGVTPAPPVP 429 ++ P + +PP + PPP VV P+ + P +E P P P V Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 107 Query: 430 GTANPDLLPAAPSSFGGNVGPVGSVQERAALSLITGEQATVATQ 473 D+ P S E A + +T AT AT Sbjct: 108 EQPKRDVKPVES--------RPASPFENTAPARLTSSTATAATS 143
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 28.3 bits (62), Expect = 0.045 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 185 QTSTLTATFAGNDDALGNVIGSLDRVAGSLASQSAEFEHTIAQTRQMVSQFNSRRSELV- 243 T +T A G++I G +A S ++ T ++ Q +SQ N+R + Sbjct: 309 NTMDMTRIDARKMQMTGDLIMKNSVTVGGIAGASRQYAATQERSEQQISQVNNRVASTAS 368 Query: 244 ----ESTGNMAAVVRQLGGILADVN 264 ES+ ++++++ + +N Sbjct: 369 DEARESSRKSTSLIQEMLKTMESIN 393
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 2e-04 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 712 GIGGAGGNGGLLFSGGGV-GGAGGLGPSGGSGGTGGHGGWFGAAGTGGSGGFGFSIAGGA 770 G G G N G + G + GG GLG GG+ G G G G + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 771 GGAGGDSTSGVGGGGGAGGDSTVTGGAGG 799 G GG+ SG G G G + A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 37.0 bits (85), Expect = 3e-04 Identities = 37/111 (33%), Positives = 44/111 (39%), Gaps = 7/111 (6%) Query: 128 NGVAGAPGTGQNGGAGGWLIGNGGAGGSG-----TPPGLGSAGGTGGTGGAAGLIGNGGA 182 N A + NGG G +G G + GSG P G GS G GG+ GNGG Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH--GNGGG 67 Query: 183 AGAGGASTSGVGGAGGAGGAGGWLFGAGGTGGAGGLTVGTTGGQGGAGGAG 233 G G + G + F A T GAGGL V + G A A Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 36.6 bits (84), Expect = 4e-04 Identities = 34/110 (30%), Positives = 41/110 (37%), Gaps = 7/110 (6%) Query: 361 GSGGSGGSGGTSGFLGTGSGGAGGDGGNASLFGFGGAGGV-GGISGNDTGGVGGMGGTAG 419 G G + G+ TSG + G G G GG + G+ GG SG+ GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH--- 62 Query: 420 LLAGNGGMGGAGGEGFLTGGAGGKGGNAMFFGTAGNGGNGGYGPTFGIGG 469 GNGG G G G TGG + FG G G I Sbjct: 63 ---GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 35.5 bits (81), Expect = 9e-04 Identities = 34/104 (32%), Positives = 39/104 (37%), Gaps = 14/104 (13%) Query: 681 GGQGGQGGDGGVIFGYGGAGGTGGVTPGGTGGIGGAGGNGGLLFSGGGVGGAGGLGPSGG 740 G G G I G G GG G+G GG SG GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 741 SGGTGGHGG--------------WFGAAGTGGSGGFGFSIAGGA 770 +G +GG G F A T G+GG SI+ GA Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.5 bits (81), Expect = 0.001 Identities = 27/102 (26%), Positives = 30/102 (29%) Query: 607 GAGGAGGSGGTALLGTGGTGGAGGAGGILGGTGGQGGIGGFGETGAGDGGSGGIAGLFGS 666 G G G + G GG G G G + G G G G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 667 GNAGGAGGYANTSDGGQGGQGGDGGVIFGYGGAGGTGGVTPG 708 GN GG G S G V FG+ G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.1 bits (80), Expect = 0.001 Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 7/80 (8%) Query: 759 SGGFGFSIAGGAGGAGGDSTSGVGGGGGAGGDSTVTG-------GAGGDGGGALLLGNGG 811 SGG G GA G+ G G G GG S +G GG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 812 NGGNGGAVVTGGTPGGGGNG 831 +G GG +GG G GGN Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 34.3 bits (78), Expect = 0.002 Identities = 31/89 (34%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 172 GAAGLIGNGGAAGAGGASTSGVGGAGGAGGAG---GWLFGAGGTGGAGGLTVGTTGGQGG 228 G G N GA G G G G GGA GW GG G + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 229 AGGAGGLFGPGGTGGAGGTSFVDAGGAGG 257 G G GG+G G S V A A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.5 bits (76), Expect = 0.003 Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 7/109 (6%) Query: 151 GAGGSGTPPGLGSAGGTGGTGGAAGLIGNGGAAGAGGASTSGVGGAGGAGGAGGWLFGAG 210 G G G G S G GG GL GGA+ G S+ GG+G W G+G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 211 GTGGAGGLTVGTTGGQGGAGGAGGLFGPGGTGGAGGTSFVDAGGAGGAG 259 G G G GG G GG A G + GAGG Sbjct: 62 HGNGGGN------GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.5 bits (76), Expect = 0.003 Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 9/104 (8%) Query: 702 TGGVTPGGTGGIGGAGGNGGLLFSGGGVGGAGGLGPSGGS------GGTGGHGGWFGAAG 755 +GG G G GN +G GVGG G S GG+G W G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 756 TGGSGGFGFSIAGGAGGAGGDSTSGVGGGGGAGGDSTVTGGAGG 799 G GG G G G G + S V G + T GAGG Sbjct: 62 HGNGGGNG---NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.5 bits (76), Expect = 0.003 Identities = 36/109 (33%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 521 GGAGGSGEAGQAGGSGGAAGLLFGVGGAGGVGGSAGLVGDAGAGGSGGSGGLLWGNGGAG 580 GG G G SG G G+G GG +G + G G G+ WG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 581 GAGGLSIANTNGTGGVGGAGGDSGLLGAGGAGGSGGTALLGTGGTGGAG 629 G GG G G GG G G L A A + G L T G GG Sbjct: 63 GNGG-------GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.1 bits (75), Expect = 0.006 Identities = 31/99 (31%), Positives = 37/99 (37%) Query: 346 GDGGAGGAGGTAGLLGSGGSGGSGGTSGFLGTGSGGAGGDGGNASLFGFGGAGGVGGISG 405 G G GA T+G + G +G G G+G G S G GG G +G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 406 NDTGGVGGMGGTAGLLAGNGGMGGAGGEGFLTGGAGGKG 444 G GG GT G L+ G T GAGG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.016 Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 499 NGANAATGSGQDGGAGGWLLGDGGAGGSGEAGQAGGSGGAAGLLFGVGGAGGVGGSAGLV 558 N +T +GG G +G G + GSG + + GG +G GG G G G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG-- 67 Query: 559 GDAGAGGSGGSGGLLWGNGGAGGAGGLSIANTNGTGGVG 597 GGSG G L A A G +T G GG+ Sbjct: 68 NGNSGGGSGTGGNL--SAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.019 Identities = 23/74 (31%), Positives = 28/74 (37%) Query: 300 GRGGDGGAGGLSNSVDAVGGAGGAGGDGSRLVGSGGAGGTGGTSLAGDGGAGGAGGTAGL 359 GRG + GA S +++ G GG S G G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 360 LGSGGSGGSGGTSG 373 G+G SGG GT G Sbjct: 66 GGNGNSGGGSGTGG 79 Score = 30.5 bits (68), Expect = 0.030 Identities = 32/116 (27%), Positives = 41/116 (35%), Gaps = 2/116 (1%) Query: 519 GDGGAGGSGEAGQAGGSGGAAGLLFGVGGAGGVGGSAGLVGDAGAGGSGGSGGLLWGNGG 578 G G G + A G+ GVGG G + GGSG G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 579 AGGAGGLSIANTNGTGGVGGAGGDSGLLG--AGGAGGSGGTALLGTGGTGGAGGAG 632 G G + +GTGG A G A G+GG A+ + G A A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 30.1 bits (67), Expect = 0.042 Identities = 29/99 (29%), Positives = 37/99 (37%) Query: 272 GGGHGGLGGAGVTAGGDGGAGGDGGPLIGRGGDGGAGGLSNSVDAVGGAGGAGGDGSRLV 331 G G G GA T+G G G G G +N G+G G GS Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 332 GSGGAGGTGGTSLAGDGGAGGAGGTAGLLGSGGSGGSGG 370 GG G +GG S G + A A + + G+GG Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 4/85 (4%) Query: 432 GQGGSGGNSGAGGTNGSGGNGGLGGAGGDGGSGTADTGGGAGNGGSGGKGGTGGVSGVAG 491 G G G N+GA T+G+ GG G G G A G G + + GG+G G Sbjct: 3 GGDGRGHNTGAHSTSGNIN----GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 492 GGGAGGTGGTGGTGGAGGTGGNGAA 516 G G G GG G +GG GTGGN +A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 37.8 bits (87), Expect = 3e-04 Identities = 33/91 (36%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 703 GAGGTGGTGGNSGTGGTSGNGGTGGTGGGGGYGGPGDYNENGYAGGSGGTGGTGGDPGTG 762 G G G G T G G TG GGG G G +EN G GG+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-----GGSGSGIHWG 57 Query: 763 GTAAVGGDGGTGGIGGGGGYGGTGFDAAGAM 793 G + G GG G GGG G GG A + Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 37.0 bits (85), Expect = 5e-04 Identities = 26/84 (30%), Positives = 36/84 (42%) Query: 407 NGGTGGAGANAVAGTGDNGSDGAAGGQGGSGGNSGAGGTNGSGGNGGLGGAGGDGGSGTA 466 +GG G T N + G G G G + G+G ++ + GG G+G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 467 DTGGGAGNGGSGGKGGTGGVSGVA 490 GG GG G G +S VA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 35.8 bits (82), Expect = 0.001 Identities = 30/108 (27%), Positives = 37/108 (34%) Query: 1013 GGTGGIANGTGNGGTGGKGGTGGDGGTGGTATTAGQTGGDGGDGGKGGGGGTGGKANGGD 1072 GG G N + +G G G GG A+ + G G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1073 GGDGGDGGDGGAGGAGGNGDGAVGGIGGGGGTGGTGGTGTPPGGANGG 1120 G GG+G GG G GGN + G T G G + G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 34.7 bits (79), Expect = 0.002 Identities = 31/101 (30%), Positives = 40/101 (39%) Query: 384 GGAAGVGGFGGSAGSYGNGGGGGNGGTGGAGANAVAGTGDNGSDGAAGGQGGSGGNSGAG 443 G G S NGG G G GGA + + +N G +G GG SG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 444 GTNGSGGNGGLGGAGGDGGSGTADTGGGAGNGGSGGKGGTG 484 G+G +GG G GG+ + A G + G GG Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.7 bits (79), Expect = 0.002 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 234 GDGGAGGAGGRAGLLGYGGAGGAGGLGGSGGAGLPNQQSGNGGGGGHGGAGGAAGWFGHA 293 G G GA +G + G G G G S G+G ++ + GGG G G G G+ Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 294 GVGGDGGTG-GAGGNGQA 310 G G+ G G G GGN A Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 34.3 bits (78), Expect = 0.003 Identities = 25/80 (31%), Positives = 28/80 (35%) Query: 1005 GTGGAGGFGGTGGIANGTGNGGTGGKGGTGGDGGTGGTATTAGQTGGDGGDGGKGGGGGT 1064 G G G T G NG G G G + G G + G +G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1065 GGKANGGDGGDGGDGGDGGA 1084 GG N G G G A Sbjct: 66 GGNGNSGGGSGTGGNLSAVA 85 Score = 34.3 bits (78), Expect = 0.003 Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 5/121 (4%) Query: 300 GTGGAGGNGQAGQLSNDVGGDGGRGGAGGAAGAGGDAGLLGLNGAGGHGGGGGMGGTGGT 359 G G G N A S ++ G G GG A G GG G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 360 GAAAAAGINAAAGGTGGDGGAAGAGGAAGVGGFGGSAGSYGNGGGGGNGGTGGAGANAVA 419 G G + GTGG+ A A A FG A S GG + GA + A+A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVA-----FGFPALSTPGAGGLAVSISAGALSAAIA 117 Query: 420 G 420 Sbjct: 118 D 118 Score = 33.9 bits (77), Expect = 0.004 Identities = 27/79 (34%), Positives = 28/79 (35%) Query: 1051 GDGGDGGKGGGGGTGGKANGGDGGDGGDGGDGGAGGAGGNGDGAVGGIGGGGGTGGTGGT 1110 G G G G T G NGG G G GG G + GG G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1111 GTPPGGANGGPGKTGADGL 1129 G G N G G L Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.004 Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 155 GGAGGSAGLIGNGGIGGQGGAGGIGGAGGSAAFFGNGGAGGHGGAGGAGGIGGNGGFFGN 214 GA ++G I G G G G G+G S+ GG G G G G GNGG GN Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 215 GGAG-GAGGNGSTGGVGLAGG 234 G G G GGN S +A G Sbjct: 71 SGGGSGTGGNLSAVAAPVAFG 91 Score = 33.9 bits (77), Expect = 0.004 Identities = 25/77 (32%), Positives = 29/77 (37%) Query: 772 GTGGIGGGGGYGGTGFDAAGAMGGIGGTGGTGGNPGPGGIGGNGGDGGTGGPGGYGDTGF 831 G G G G T + G G+G GG G G G G G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 832 GTAGYAGGTGGTGGTGG 848 G G G +GG GTGG Sbjct: 63 GNGGGNGNSGGGSGTGG 79 Score = 33.5 bits (76), Expect = 0.005 Identities = 35/109 (32%), Positives = 39/109 (35%) Query: 794 GGIGGTGGTGGNPGPGGIGGNGGDGGTGGPGGYGDTGFGTAGYAGGTGGTGGTGGAPGPG 853 GG G TG + G I G G GG G GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 854 GSAAGNGGGGGIGGIGGTGGSGATTAGFAGGDGGKGGTGGTGGSAGAGA 902 G+ GNG GG G GG + A F G GG S AGA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.007 Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 454 LGGAGGDGGSGTADTGGGAGNGGSGGKGGTGGVSGVAGGGGAGGTGGTGGTGGAGGTGGN 513 + G G G + A + G NGG G G GG S G G G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGAS---DGSGWSSENNPWGGGSGSGIHWG 57 Query: 514 GAAGKSDTGDIGGSGGYGGDGGNGGNS 540 G +G + G G SGG G GGN Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.8 bits (74), Expect = 0.008 Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 7/89 (7%) Query: 966 GEGGFGGTGGNSYYAGNAGPGGQGGQGGAGANGAPGLA-------GGTGGAGGFGGTGGI 1018 G G G G +GN G G G GA+ G + GG+G +GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1019 ANGTGNGGTGGKGGTGGDGGTGGTATTAG 1047 NG GNG +GG GTGG+ G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.8 bits (74), Expect = 0.009 Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Query: 839 GTGGTGGTGGAPGPGGSAAGNGGGGGIGGIGGTG-GSGATTAGFAGGDGGKGGTGGTGGS 897 G G G GA G+ G G G+GG G G + + GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 898 AGAGAANGSGGTGGQGG 914 G SGG G GG Sbjct: 63 GNGGGNGNSGGGSGTGG 79 Score = 32.8 bits (74), Expect = 0.009 Identities = 33/83 (39%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 653 GEGGTGGNSAAGGTSGDGTQVAWGRGGDGGDGGQGGYGGAGSFEQPGGTGGAGGTGGTGG 712 G G G N+ A TSG+ + G G G GG G S P G GG+G GG Sbjct: 3 GGDGRGHNTGAHSTSGN---INGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGG 58 Query: 713 NSGTGGTSGNGGTGGTGGGGGYG 735 SG G GNG +GG G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 32.8 bits (74), Expect = 0.009 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 6/106 (5%) Query: 470 GGAGNGGSGGKGGTGGVSGVAGGGGAGGTGGTGGTGGAGGTGGNGAAGKSDTGDIGGSGG 529 GG G G + G T G + GG G GG G + N G S +G G G Sbjct: 3 GGDGRGHNTGAHSTSG--NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 530 YGGDGGNGGNSLPGGTNGAGGTGGTGGEGGGGGTGTPDTGSGGGDG 575 G+GG GNS G+G G G P + G G Sbjct: 61 GHGNGGGNGNS----GGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.8 bits (74), Expect = 0.010 Identities = 27/79 (34%), Positives = 35/79 (44%) Query: 501 TGGTGGAGGTGGNGAAGKSDTGDIGGSGGYGGDGGNGGNSLPGGTNGAGGTGGTGGEGGG 560 +GG G TG + +G + G G G G G+G +S G G+G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 561 GGTGTPDTGSGGGDGGDGG 579 G G + SGGG G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 32.8 bits (74), Expect = 0.010 Identities = 24/67 (35%), Positives = 31/67 (46%) Query: 119 GANGTTVNGVGTPGGDGGILYGNGGNGGTSTNAATAGGAGGSAGLIGNGGIGGQGGAGGI 178 GA+ T+ N G P G G + G+G +S N GG+G G G G GG G Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 179 GGAGGSA 185 GG G+ Sbjct: 72 GGGSGTG 78 Score = 32.4 bits (73), Expect = 0.011 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 527 SGGYGGDGGNGGNSLPGGTNGAGGTGG-TGGEGGGGGTGTPDTGSGGGDGGDGGYGGYGG 585 SGG G G +S G NG G GG G G + + GGG G +GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 586 SGGLPGHGDGADGVAGTGGKGGAGGAA 612 G G + G +GTGG A A Sbjct: 62 HGN-GGGNGNSGGGSGTGGNLSAVAAP 87 Score = 32.4 bits (73), Expect = 0.011 Identities = 25/82 (30%), Positives = 32/82 (39%) Query: 582 GYGGSGGLPGHGDGADGVAGTGGKGGAGGAAGTGANATAGTDRYGGYGGDGGGGGGGGYG 641 G G G G + + G G GG A G+ ++ + +GG G G GGG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 642 GNSIRGTGGVGGEGGTGGNSAA 663 GN GG G G SA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.4 bits (73), Expect = 0.012 Identities = 27/89 (30%), Positives = 33/89 (37%) Query: 576 GDGGYGGYGGSGGLPGHGDGADGVAGTGGKGGAGGAAGTGANATAGTDRYGGYGGDGGGG 635 G G G G+ G+ +G G GG G + N G G + G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 636 GGGGYGGNSIRGTGGVGGEGGTGGNSAAG 664 G GG GNS G+G G A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.4 bits (73), Expect = 0.012 Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Query: 682 GDGGQGGYGGAGSFEQPGGTGGAGGTGGTGGNSGTG-GTSGNGGTGGTGGGGGYGGPGDY 740 G G+G GA S G G G G + G+G + N GG+G G +GG + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 741 NENGYAGGSGGTGGTGGDPGTGGTAAVGGDGGTGGIGGGG 780 G G SGG GTGG+ G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.012 Identities = 28/101 (27%), Positives = 35/101 (34%) Query: 472 AGNGGSGGKGGTGGVSGVAGGGGAGGTGGTGGTGGAGGTGGNGAAGKSDTGDIGGSGGYG 531 +G G G G SG GG G G G + G+G + N G I GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 532 GDGGNGGNSLPGGTNGAGGTGGTGGEGGGGGTGTPDTGSGG 572 G G + GG+ G G G+GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.018 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 634 GGGGGGYGGNSIRGTGGV-GGEGGTGGNSAAGGTSGDGTQVAWGRGGDGGDGGQGGYGGA 692 GG G G+ + +G + GG G G A SG ++ GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 693 GSFEQPGGTGGAGGTGGTGGNSGTGGTSGNGGTGGTGGGG 732 G+ G +GG GTGG G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.018 Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 4/104 (3%) Query: 205 IGGNGGFFGNGGAGGAGGNGSTGGVGLAGGDGGAGGAGGRAGLLGYGGAGGAG----GLG 260 + G G N GA GN + G GL G G + G+G + +GG G+G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 261 GSGGAGLPNQQSGNGGGGGHGGAGGAAGWFGHAGVGGDGGTGGA 304 G G G G G GG+ A A FG + G G A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.8 bits (69), Expect = 0.032 Identities = 27/89 (30%), Positives = 32/89 (35%) Query: 925 TNGTYEGMPGGVGGTGGAGGEGGLPGTGAGTAGSIGSAGNGGEGGFGGTGGNSYYAGNAG 984 T+G G P G+G GGA G G GS + G G G GG + +G Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 985 PGGQGGQGGAGANGAPGLAGGTGGAGGFG 1013 G A A T GAGG Sbjct: 76 GTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.8 bits (69), Expect = 0.033 Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 276 GGGGHGGAGGAAGWFGHAGVGGDGGTGGAGGNGQAGQLSNDVGGDGGRGGAGGAAGAGGD 335 GG G G GA G+ G G G G + +G S + GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 336 AGLLGLNGAGGHGGGGGMGGTGGTGAAAAAGINAAAGGTGGDGGAA 381 G +GG G GG + AA A T G GG A Sbjct: 63 GNGGGNGNSGGGSGTGG----NLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.5 bits (68), Expect = 0.041 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 4/85 (4%) Query: 350 GGGMGGTGGTGAAAAAGINAAAGGTGGDGGAAGAGGAAGV----GGFGGSAGSYGNGGGG 405 GG G + + IN G G GGA+ G + GG GS +G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 406 GNGGTGGAGANAVAGTGDNGSDGAA 430 GNGG G G+ + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87
>cloacin#Cloacin signature. Length = 551 Score = 41.6 bits (97), Expect = 9e-06 Identities = 29/81 (35%), Positives = 34/81 (41%) Query: 379 GAGGHGGSGGSGGGTGGSGGSAGTLLGNGGAGGGGGSGSTTAGGGGSGGDAGALFGNGGA 438 G G G + G+ +G G L GGA G G S GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 439 GGAGGSGAATGGSGGTGGSSA 459 G GG+G + GGSG G SA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 41.2 bits (96), Expect = 1e-05 Identities = 30/78 (38%), Positives = 31/78 (39%) Query: 324 GAGGDGGNGGVFFGGGGDGGIGGHGITGSGGSGGSGGSGGFLPGGAGVAGLIGDGGAGGH 383 G G G N G G G G G S GSG S P G G I GG GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 384 GGSGGSGGGTGGSGGSAG 401 G GG+G GGSG Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 35.5 bits (81), Expect = 7e-04 Identities = 27/82 (32%), Positives = 33/82 (40%) Query: 437 GAGGAGGSGAATGGSGGTGGSSALLFGTGGVGGVGGSGGDSGGTGGAGGQGGAMFGNGGA 496 G G G + A SG G L GG G ++ GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 497 GGGGGDGINVGGKGGAGGAAAT 518 G GGG+G + GG G G +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 35.5 bits (81), Expect = 7e-04 Identities = 38/114 (33%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 406 NGGAGGGGGSGSTTAGGGGSGGDAGALFGNGGAGGAGGSGAAT--GGSGGTGGSSALLFG 463 +GG G G +G+ + G +GG G G G + G+G S GG G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 464 TGGVGGVGGSGGDSGGTGGAGGQGGAM-FGNGGAGGGGGDGINVGGKGGAGGAA 516 G GG G SGG SG G + FG G G+ V GA AA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 35.1 bits (80), Expect = 0.001 Identities = 39/123 (31%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 319 GQVSGGAGGDGGNGGVFFGGGGDGGIGGHGITGSGGSGGSGGSGGFLPGGAGVAGLIGDG 378 G G G G GG G+GG GSG S + GG G G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 379 GAGGHGGSGGSGGGTGGSGGSAGTL------LGNGGAGGGGGSGSTTAGGGGSGGDAGAL 432 GG+G SGG G G A + L GAGG S S A AL Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAAL 123 Query: 433 FGN 435 G Sbjct: 124 KGP 126 Score = 34.7 bits (79), Expect = 0.001 Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 6/109 (5%) Query: 129 NGGDGGILYGNGGAGGSGAAGGNGGAGGAAGLVGNGGAGGAGGNNAAGGSGGAGGLLYGN 188 +GGDG + GG G G G + G+G + NN GG G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 189 GGAGGIGGTSAGSGGAGGAGGLLFGTGGAGGTGGFGGGLMTSGGAGGTG 237 G G GG GG+G G L FG +++ GAGG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNL----SAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.7 bits (79), Expect = 0.001 Identities = 27/80 (33%), Positives = 31/80 (38%) Query: 498 GGGGDGINVGGKGGAGGAAATLFGSGGTGGDGGNAGAGVTFGGAGGEGGAAALLGGNGGS 557 GG G G N G +G G G GG +G GG G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 558 GGHGGIGNVGGKGGAGAAGA 577 G GG GN GG G G + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 33.5 bits (76), Expect = 0.003 Identities = 33/109 (30%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 248 GSGGAGGGSNAFTAGDGGAGGAGGLLFGTGGSGGDGGLAPGAMFGNGGHGGTGGAGGTLS 307 G G G + A + GG GL G G S G G + +G G G GG+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 308 GIGGHGGAGGLGQVSGGAGGDGGNGGVF-FGGGGDGGIGGHGITGSGGS 355 G GG G G G +GG F F G GG ++ S G+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.004 Identities = 28/90 (31%), Positives = 34/90 (37%) Query: 275 GTGGSGGDGGLAPGAMFGNGGHGGTGGAGGTLSGIGGHGGAGGLGQVSGGAGGDGGNGGV 334 G G G + G + NGG G G GG G G G SG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 335 FFGGGGDGGIGGHGITGSGGSGGSGGSGGF 364 GGG GG G G+ + + + GF Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92 Score = 32.8 bits (74), Expect = 0.005 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 7/108 (6%) Query: 126 SGANGGDGGILYGNGGAGGSGAAGGNGGAGGAAGLVGNGGAGGAGGNNAAGGSGGAGGLL 185 +GA+ G I G G G G G + G+G ++ GG G+G + G G GG Sbjct: 11 TGAHSTSGNINGGPTGLGVGG--GASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG-- 66 Query: 186 YGNGGAGGIGGTSAGSGGAGGAGGLLFGTGGAGGTGGFGGGLMTSGGA 233 G GG+ G + A + FG G G + S GA Sbjct: 67 ---GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.4 bits (73), Expect = 0.006 Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 10/105 (9%) Query: 358 SGGSGGFLPGGAGVAGLIGDGGAGGHGGSGGSGGGTGGS------GGSAGTLLGNGGAGG 411 SGG G GA +GG G G GG+ G+G S GG +G+ + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 412 GGGSGSTTAGGGGSGGDAGALFGNGGAGGAGGSGAATGGSGGTGG 456 G G G G SGG +G G + G GG Sbjct: 62 HGNGG----GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.007 Identities = 38/127 (29%), Positives = 47/127 (37%), Gaps = 11/127 (8%) Query: 144 GSGAAGGNGGAGGAAGLVGNGGAGGAGGNNAAGGSGGAGGLLYGNGGAGGIGGTSAGSGG 203 G G N GA +G + G G G A+ GSG + N GG G+ GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSE----NNPWGGGSGSGIHWGG 58 Query: 204 AGGAGGLLFGTGGAGGTGGFGGGLMTSGGAGGTGGAGGLLFGTGGSGGAGGGSNAFTAGD 263 G G GG G GGG T G F + GAGG + + +AG Sbjct: 59 GSGHGN-------GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Query: 264 GGAGGAG 270 A A Sbjct: 112 LSAAIAD 118 Score = 32.0 bits (72), Expect = 0.009 Identities = 28/108 (25%), Positives = 33/108 (30%) Query: 187 GNGGAGGIGGTSAGSGGAGGAGGLLFGTGGAGGTGGFGGGLMTSGGAGGTGGAGGLLFGT 246 G G G G + SG G L GGA G+ GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 247 GGSGGAGGGSNAFTAGDGGAGGAGGLLFGTGGSGGDGGLAPGAMFGNG 294 G GG G G + A + FG G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.2 bits (70), Expect = 0.013 Identities = 38/112 (33%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 216 GAGGTGGFGGGLMTSGGAGGTGGAGGLLFGTGGSGGAGGGSNAFTAGDGGAGGAGGLLFG 275 G G G G TSG G G+ G G S G+G S G G G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV--GGGASDGSGWSSENNPWGGG--SGSGIHWGG 58 Query: 276 TGGSGGDGGLAPGAMFGNGGHGGTGGAGGTLSGIGGHGGAGGLGQVSGGAGG 327 G G G GNG GG G GG LS + G + GAGG Sbjct: 59 GSGHGNGG--------GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.5 bits (68), Expect = 0.024 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 589 GGNSLASLAGAGGAAGN--AGLIGSGGTGGAGGQSFSGTGGKGGDGGSALLIGDGGNGGN 646 GG+ GA +GN G G G GGA S + GGS I GG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 647 GGTGATAGVGGTAGTGG 663 G G GG +GTGG Sbjct: 63 GNGGGNGNSGGGSGTGG 79
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (280), Expect = 4e-32 Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 10/252 (3%) Query: 4 LEGKTALVTGGNSGIGLAAAQRLAAEGAHVFLTGRN---QATIDAAVASIGSRAHGIRAD 60 +EGK A +TG GIG A A+ LA++GAH+ N + +++ + A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 VSNIEDLARVADAIAAAGRGLDVLFANAGGGEFVLLGDITIEHFTNGFMTNVAGTLFTVQ 120 V + + + I +D+L AG L+ ++ E + F N G + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 TMLPLLNS--GASIVLTGSTAAYNGSPAFSVYAATKAAIRSFGRTWAAELVSRNIRVNTV 178 ++ + SIV GS A + + YA++KAA F + EL NIR N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 179 VPGPVETPGLKGL-APEGQEQQLLEGEAAK----VPMGRLGKPAEIAAAVLFLASDQSSF 233 PG ET L A E +Q+++G +P+ +L KP++IA AVLFL S Q+ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 234 MTGSEMFVDGGT 245 +T + VDGG Sbjct: 246 ITMHNLCVDGGA 257
>cloacin#Cloacin signature. Length = 551 Score = 48.6 bits (115), Expect = 4e-08 Identities = 34/80 (42%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 477 RGHFGGGAPGRSGPSGGGHGGQFGGGGHGGRFGGGGHGGGFGGGRGGGGHGGGFGGFGGG 536 RGH GA SG GG G GGG G +GGG G G H GG G G Sbjct: 7 RGH-NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG----GSG 61 Query: 537 HGGGGHGGGFGGGHGGGFGG 556 HG GG G GGG G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 45.1 bits (106), Expect = 5e-07 Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 464 GRGPAGGSLGPGRRGHFGGGAPGRSGPSGGGHGGQFGGGGHGGRFGGGGHGGGFGGGRGG 523 GRG G+ G+ GG P G GG G + GG G G +GGG G Sbjct: 6 GRGHNTGAHSTS--GNINGG-PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG-SG 61 Query: 524 GGHGGGFGGFGGGHGGGGHGGGFGGGHGGGF 554 G+GGG G GGG G GG+ GF Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92 Score = 44.7 bits (105), Expect = 7e-07 Identities = 30/79 (37%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 456 GLGRIPNPGRGPAGGSL--GPGRRGHFGGGAPG-----RSGPSGGGHGGQFGGGGHGGRF 508 G GR N G G++ GP G GG + G + P GGG G GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH- 62 Query: 509 GGGGHGGGFGGGRGGGGHG 527 G GG G GGG G GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 44.7 bits (105), Expect = 7e-07 Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 488 SGPSGGGHGG---QFGGGGHGGRFGGGGHGGGFGGGRGGGGHGGGFGGFGGGHGGGGHGG 544 SG G GH G +GG G G GG G + GG G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 545 GFGGGHGGGFGGGHGG 560 GG G GGG G Sbjct: 62 HGNGGGNGNSGGGSGT 77
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 46.9 bits (111), Expect = 7e-08 Identities = 29/146 (19%), Positives = 38/146 (26%), Gaps = 18/146 (12%) Query: 313 GALAVSLAVSIRSEPGTRPDPGQSVVTHLPAPAHAAPAPQPQAPAPQAPAPQAQAPAPQA 372 GA+ L + + P P Q + + APA P Q P Sbjct: 26 GAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPP---------------- 69 Query: 373 QVPAPAPAPQAPAPRAPAPQAPAPQAQVPAPKAPAPVPVPVAQAPVPVPQAPAPVPVPIP 432 P P P+ P P AP P P P PV + P P Sbjct: 70 --PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPAS 127 Query: 433 QAPAPAPEAPVPAPVPIPVPIQIPLP 458 AP P + + Sbjct: 128 PFENTAPARPTSSTATAATSKPVTSV 153 Score = 39.6 bits (92), Expect = 1e-05 Identities = 24/107 (22%), Positives = 31/107 (28%), Gaps = 4/107 (3%) Query: 380 APQAPAPRAP---APQAPAPQAQVPAPKAPAPVPVPVAQAPVPVPQAPAPVPVPIPQ-AP 435 + PAP P APA A + P V P P+P+ P PV I + P Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 436 APAPEAPVPAPVPIPVPIQIPLPQIFGPGGGGGFPGGDDDRGGRGGG 482 P P+ V P P+ P Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146 Score = 36.9 bits (85), Expect = 1e-04 Identities = 26/121 (21%), Positives = 30/121 (24%), Gaps = 5/121 (4%) Query: 362 APQAQAPAPQAQVPAPAPAPQAPAPRAPAPQAPAPQAQVPAPKAPAPVPV---PVAQAPV 418 + APA V APA P P P P + P P P PV Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPP--PEPVVEPEPEPEPIPEPPKEAPVVIEKP 97 Query: 419 PVPQAPAPVPVPIPQAPAPAPEAPVPAPVPIPVPIQIPLPQIFGPGGGGGFPGGDDDRGG 478 P P PV + P + P P P G Sbjct: 98 KPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157 Query: 479 R 479 R Sbjct: 158 R 158
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.025 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 17/87 (19%) Query: 1 MRCTVFGT-GYLGATHAVGMAQLGHEVVGVDIDPGKVAKLAGGDIPFYEPGLRKLLRDNL 59 M+ V G G++G + + + GH+VVG+D L +Y+ L++ + L Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGID-------NLN----DYYDVSLKQARLELL 49 Query: 60 AAGRLHFTT----DYD-MAAEFADVHF 81 A F D + M FA HF Sbjct: 50 AQPGFQFHKIDLADREGMTDLFASGHF 76
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 4e-05 Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 365 GGNGGQGGTGGTLFGNGGGGGTGGAGFVGPSSAGDGGNGGGGGRAGLIGNGGAGGAGGAP 424 G N G T G + G G G GG G + + GGG +G+ GG+G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI---HWGGGSGHGN 64 Query: 425 GPNGGFSGGNGGNGGDAVLIGNGGNSGDVGLS--GAGTPGLPGNGGLLIGTIGN 476 G G SGG G GG+ + G LS GAG + + G L I + Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 35.8 bits (82), Expect = 3e-04 Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 4/111 (3%) Query: 138 GDGGAGGSGGLEQQGGT--GGAAGLFGNGGAGGAGGASTVGTGAAGGAGGAGGLLWGQGG 195 G G G + G G GG GL GGA G S+ GG+G G+ WG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS--GIHWGGGS 60 Query: 196 IGGTGGSGIDGGAGGAGGAGGALFGIGGAGGQGGIASTGLTGGGAGGDGGA 246 G GG + G G G + A G +++ G G GA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.5 bits (81), Expect = 4e-04 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 245 GAGGLFGNGGIGGTGGLASVGPGGVGGNGGAA--------GTLLGNGGGGGVGGFGATQG 296 G G N G T G + GP G+G GGA+ G G G G+ G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 297 GDGGDGGATGIFGGTGGAGGA 317 G+GG G +G GTGG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.002 Identities = 34/101 (33%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 336 GGDGRLFGNGGAGGVGGAAYTSNILMNATGGNGGQGGTGGTLFGNGGGGGTGGAGFVGPS 395 GGDGR N GA G + GG G GGG G+G G Sbjct: 3 GGDGRGH-NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 396 SAGDGGNGGGGGRAGLIGNGGAGGAGGAPGPNGGFSGGNGG 436 GGNG GG +G GN A A A G + G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.8 bits (69), Expect = 0.013 Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Query: 220 GIGGAGGQGGIASTGLTGGGAGGDGGAGGLFGNGGIGGT----GGLASVGPGGVGGNGGA 275 G G G +++G GG G G GG G GG + G GG+G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH- 62 Query: 276 AGTLLGNGGGGGVGGFGATQGGDGGDGGATGIFG----GTGGAGGAG 318 GNGGG G G G+ GG+ A FG T GAGG Sbjct: 63 -----GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.5 bits (68), Expect = 0.015 Identities = 25/71 (35%), Positives = 31/71 (43%) Query: 282 NGGGGGVGGFGATQGGDGGDGGATGIFGGTGGAGGAGGQSTNALADSVGGNGGQGGDGRL 341 +GG G GA +GG TG+ G G + G+G S N G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 342 FGNGGAGGVGG 352 GNGG G G Sbjct: 62 HGNGGGNGNSG 72 Score = 29.7 bits (66), Expect = 0.032 Identities = 21/72 (29%), Positives = 29/72 (40%) Query: 118 NGANGAAGTGANGGAAGWLLGDGGAGGSGGLEQQGGTGGAAGLFGNGGAGGAGGASTVGT 177 N + NGG G +G G + GSG + GG +G + G G G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 178 GAAGGAGGAGGL 189 + GG+G G L Sbjct: 70 NSGGGSGTGGNL 81 Score = 29.3 bits (65), Expect = 0.034 Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 12/132 (9%) Query: 186 AGGLLWGQGGIGGTGGSGIDGGAGGAGGAGGALFGIGGAGGQGGIASTGLTGGGAGGDGG 245 +GG G + I+GG G G GGA + G G + GGG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGA------SDGSGWSSENNPWGGGSGSGIH 55 Query: 246 AGGLFGNGGIGGTGGLASVGPGGVGGNGGAAGTLLGNG----GGGGVGGFGATQGGDGGD 301 GG G+G GG G S G G GGN A + G G GG + Sbjct: 56 WGGGSGHGNGGGNGN--SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Query: 302 GGATGIFGGTGG 313 I G Sbjct: 114 AAIADIMAALKG 125
>cloacin#Cloacin signature. Length = 551 Score = 35.5 bits (81), Expect = 4e-04 Identities = 26/78 (33%), Positives = 31/78 (39%) Query: 231 GAGGDGGVGGFGTFAGNGGDGGTGLFAAGGDGGAGGSGLTQGGDGGIGGAALGLFGAGGA 290 G G G G + +GN G TGL GG G GG G+ + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 291 GGTGGEGGLFGGAGGMGG 308 G GG G GG+G G Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 35.5 bits (81), Expect = 5e-04 Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 364 GAGGAGGNAGFLYGAGGAGGAGGDSVGGADGGDGGNGGKAGLVGQGGDGGAGGNNNSGFG 423 G G G N GA G+ GG G G G G + GG + SG Sbjct: 3 GGDGRGHN-------TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 424 TGGSGGKGGDAVLIGNGGNGGNAGSGGVGPGIAGAAGIGGLLIGEDGMAGL 474 GG G G GNG +GG +G+GG +A G + G GL Sbjct: 56 WGGGSGHGNGG---GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 34.7 bits (79), Expect = 8e-04 Identities = 34/115 (29%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 258 AGGDGGAGGSGLTQGGDGGIGGAALGLFGAGGAGGTGGEGGLFGGAGGMGGSAGMLFGNG 317 +GGDG +G G I G GL GGA G GG GS G Sbjct: 2 SGGDGRGHNTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 318 GDGGAGAAATIGNAAGNGGAGGNAGMLIGAG----GAGGNGGFGFSASDGGAGGA 368 G G G G +G GG + G G GG S S G A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 34.7 bits (79), Expect = 8e-04 Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 346 GAGGAGGNGGFGFSASDGGAGGAGGNAGFLYGAGGAGGAGGDSVGGADGGDGGNGGKAGL 405 G G G N G A GG G G G + G+G S GG G+G G Sbjct: 3 GGDGRGHNTG----AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 406 VGQGGDGGAGGNNNSGFGTGGSGGKGGDAVLIGNGGNGGNAGSGGVGPGIAGAA 459 G+GG GN+ G GTGG+ V G G+GG+ I+ A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPAL-STPGAGGLAVSISAGA 111 Score = 33.5 bits (76), Expect = 0.002 Identities = 31/91 (34%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 202 GRGGAGGAGGFGNNTTGGIGGLGGAGGLFGAGGDGGVGGFGTFAGNGGDGGTGLFAAGGD 261 GRG GA N GG GLG GG G G GG G+G+ GG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGG-----ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 262 GGAGGSGLTQGGDGGIGGAALGLFGAGGAGG 292 G G G G G G L A A G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.5 bits (76), Expect = 0.002 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 312 MLFGNGGDGGAGAAATIGNAAGNGGAGGNAGMLIGAGGAGGNGGFGFSASDGGAGGAGGN 371 M G+G GA +T GN G G G G + G G+S+ + GG G+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLG--------VGGGASDGSGWSSENNPWGGGSGS 52 Query: 372 AGFLYGAGGAGGAGGDSVGGADGGDGGNG 400 G G G GG+ G G GGN Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.012 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 384 AGGDSVGGADGGDGGNGGKAGLVGQGGDGGAGGNNNSGFGTGGSGGKGGDAVLIGNGGNG 443 +GGD G G +G G G GG G ++ SG+ + + GG I GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 444 GNAGSGGVGPGIAGAAGIGGL 464 G+ GG G G+ G L Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.014 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Query: 140 GAGGSGTPGTASVAGGNGGNGGAGGLLFGTGGAGGAG-GTASSLVGAIPGGNGGYGGDGG 198 G G G A GN NGG GL G G + G+G + ++ G G +GG G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 199 LLFGRGGAGGAGGFGNNTTGG 219 G GG G G G+ T G Sbjct: 62 --HGNGGGNGNSGGGSGTGGN 80 Score = 30.5 bits (68), Expect = 0.015 Identities = 27/103 (26%), Positives = 34/103 (33%), Gaps = 2/103 (1%) Query: 289 GAGGTGGEGGLFGGAGGMGGSAGMLFGNGGDGGAGAAATIGNAAGNGGAGGNAGMLIGAG 348 G G G G +G + G L GG ++ N G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 349 GAGGNGGFGFSASDGGAGGAGGNAGFLYG--AGGAGGAGGDSV 389 G GG G S G + A +G A GAGG +V Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAV 105 Score = 30.5 bits (68), Expect = 0.018 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 246 GNGGDGGTGLFAAGGDGGAGGSGLTQGGDGGIG-GAALGLFGAGGAGGTGGEGGLFGGAG 304 G G + G + +GG G G+ G G G + +G G G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 305 GMGGSAGMLFGNGGDGGAGAAA 326 G G++G G GG+ A AA Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAP 87 Score = 29.7 bits (66), Expect = 0.027 Identities = 32/109 (29%), Positives = 37/109 (33%), Gaps = 10/109 (9%) Query: 116 GNGANGAPGTGADGGAAGWLIGNGGAGGSGTPGTASVAGGNGGNGGAGGLLFGTGGAGGA 175 G G N + + G G G S G +S GG G+G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 176 GGTASSLVGAIPGGNGGYGGDGGLLFGRGGAGGAGGFGNNTTGGIGGLG 224 GG GN G G G A A GF +T G GGL Sbjct: 66 GG----------NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 29.3 bits (65), Expect = 0.041 Identities = 33/109 (30%), Positives = 38/109 (34%), Gaps = 8/109 (7%) Query: 170 GGAGGAGGTASSLVGAIPGGNGGYGGDGGLLFGRGGAGGAGGFGNNTTGGIGGLGGAGGL 229 G G A S G I GG G G GG A G+ + GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGG-------ASDGSGWSSENNPWGGGSGSGIHW 56 Query: 230 FGAGGDGGVGGFGTFAGNGGDGGTGLFAAGGDGGAGGSGLTQGGDGGIG 278 G G G GG G +G G G L A G L+ G GG+ Sbjct: 57 GGGSGHGNGGGNGN-SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 28.9 bits (64), Expect = 0.050 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 7/84 (8%) Query: 110 TGRPLIGNGANGAPGTGADGGAA----GWLIGNGGAGGSGTPGTASVAGGNGGNGGAGGL 165 TG NG P GG A GW N GG G G GNGG G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG- 69 Query: 166 LFGTGGAGGAGGTASSLVGAIPGG 189 +GG G GG S++ + G Sbjct: 70 --NSGGGSGTGGNLSAVAAPVAFG 91
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 403 GAGAVAGASGAAGTIIAGNGGNGGAGGAGYAADGPAGPAIGNGGDGGRGGAGGFYGNGGA 462 G G GA +G I NGG G G G A+DG + N GG G + G G Sbjct: 6 GRGHNTGAHSTSGNI---NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 463 GGAGGNSAPGGGNGGNGGTGGDSGAM 488 G GGN GGG+G G + + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 36.2 bits (83), Expect = 7e-04 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 462 AGGAGGNSAPGGGNGGNGGTGGDSGAMGSSGGRGGDGGVGTNGGAGGGGGNATSYGTANA 521 +GG G G + GG +G G G G N GGG G+ +G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 522 TGGAGGDGGAGSRGTGGTGGAGGGGGAAQILNGASAATATGGAGGAG 568 G GG+G +G GG+G G A + A +T GAGG Sbjct: 62 HGNGGGNGNSG----GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.7 bits (79), Expect = 0.002 Identities = 32/108 (29%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 321 SGGGGAGGNGGAGGAGGHGSALFGAAGANGNGGAGGAGGNPGAPGNGGIGGVGPDAATSG 380 SGG G G N GA G+ + G G G + P GG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNP-WGGGSGSGIHWGGGS 60 Query: 381 GMGGTGGDPGAVGGGGNGGAAGGAGAVAGASGAAGTIIAGNGGNGGAG 428 G G GG+ G G G GG + A A G G GG Sbjct: 61 GHGNGGGN----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.7 bits (79), Expect = 0.002 Identities = 28/87 (32%), Positives = 32/87 (36%) Query: 222 MFGNGGAGGMGGAGADGAVGAAGTAGTSTSAGGVGGVGGDGGNAGNGGAGGNGGLFVGVG 281 M G G G GA + G G G G G N GG G+G + G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 282 GAGGQGGAGGAGGTGGAGGAGWDATAA 308 G G GG G +GG G GG A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 34.3 bits (78), Expect = 0.003 Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 426 GAGGAGYAADGPAGPAIGNGGDGGRGGAGGFYGNGGAGGAGGNSAPGGGNGGNGGTGGDS 485 G G G+ + NGG G G GG + G+G + N+ GGG+G GG S Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 486 GAMGSSGGRGGDGGVGTNGGAGGGGGNATSYGTANATGGAGG 527 G G GG GT G A +T GAGG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.3 bits (78), Expect = 0.003 Identities = 37/117 (31%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 144 GNGGNGGSGAAGQAGGA--GGAAGLIGTGGAGGMGGAGGGAGGMGGSGGWLLGNGGAGGA 201 G G G + A G GG GL GGA G GG G + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 202 GGVGGAGVSGGVGGTGGNAVMFGNGGAGGMGGAGADGAVGAAGTAGTSTSAGGVGGV 258 G GG G SGG GTGGN A G GA G A + + + + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 33.9 bits (77), Expect = 0.004 Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Query: 864 ATGGAGGDGGSGGTGRGGTGGVGGVGINNGSGEAIGGAPGAGGTGAVGGDGGQGGAAYSY 923 +G G G G G + G G NN G G GG G GG G + Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 924 GTGDATGSAGAAGTAGTTGVGGTGGAGGAAYTLNGASTATATGGI 968 GTG SA AA A T GAGG A +++ + + A I Sbjct: 76 GTG-GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 33.9 bits (77), Expect = 0.004 Identities = 23/83 (27%), Positives = 29/83 (34%) Query: 259 GGDGGNAGNGGAGGNGGLFVGVGGAGGQGGAGGAGGTGGAGGAGWDATAAGVLAATGGDG 318 GGDG G +G + G G G GGA G + +G+ G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 319 GDSGGGGAGGNGGAGGAGGHGSA 341 G+ GG G G G G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.8 bits (74), Expect = 0.007 Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 8/117 (6%) Query: 265 AGNGGAGGNGGLFVGVGGAGGQGGAGGAGGTGGAGGAGWDATAAGVLAATGGDGGDSGGG 324 +G G G N G G G G GG G + G+GW + GG SG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSE-------NNPWGGGSGSG 53 Query: 325 GAGGNGGAGGAGGHGSALFGAAGANGNGGAGGAGGNPGAPGNGGIGGVGPDAATSGG 381 G G G GG G +G GN A A G P G G + S G Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.8 bits (74), Expect = 0.009 Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 1/101 (0%) Query: 671 GNGGTGHGGGGGSGGTAINYGAGDAFGGAAGKGGTGVVGGNGGSGGAAYNYGTGNATGAD 730 G G GH G S IN G G G+G N GG + G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGS-GSGIHWGGGSG 61 Query: 731 GAAGTDGTTGAGGSGGSGGAASVLNSASIATATSGSGGAGG 771 G GGSG G ++V + + GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.0 bits (72), Expect = 0.014 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 2/83 (2%) Query: 420 GNGGNGGAGGAGYAADGPAGPAIGNGGDGGRGGAGGFYGNGGAGGAGGNSAPGGGNGGNG 479 G G N GA +G GP G G G+G N GG G+ GG G+G Sbjct: 6 GRGHNTGAHSTSGNING--GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 480 GTGGDSGAMGSSGGRGGDGGVGT 502 GG+ + G SG G V Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAA 86 Score = 31.6 bits (71), Expect = 0.019 Identities = 36/117 (30%), Positives = 46/117 (39%), Gaps = 1/117 (0%) Query: 644 AGGDGGRTTIDGAGSRATATGGTGGDGGNGGTGHGGGGGSGGTAINYGAGDAFGGAAGKG 703 +GGDG + GG G G GG G G S G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH-WGGGS 60 Query: 704 GTGVVGGNGGSGGAAYNYGTGNATGADGAAGTDGTTGAGGSGGSGGAASVLNSASIA 760 G G GGNG SGG + G +A A A G + G G + ++ SA+IA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 31.6 bits (71), Expect = 0.021 Identities = 26/83 (31%), Positives = 36/83 (43%) Query: 713 GSGGAAYNYGTGNATGADGAAGTDGTTGAGGSGGSGGAASVLNSASIATATSGSGGAGGD 772 G G +N G + +G T G G S GSG ++ + + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 773 GTDGGNGGSGGFAFTFGTGNIIA 795 G GGNG SGG + T G + +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVA 85
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 57.8 bits (139), Expect = 2e-10 Identities = 42/250 (16%), Positives = 68/250 (27%), Gaps = 13/250 (5%) Query: 726 LDREKATLPEKGTAAKEAEKRAKAAPKAAAPAAPAPAPAEA-PAKAAEAPAAATAASPAA 784 +D T P A + + A AP P PA A P++ E A + Sbjct: 992 VDTTNITTPNNIQADVPSV-PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 785 PAKGLGMAGGAKRPGAKKAAPAPAAETAAAEAPAAPAKGLGMAAGAKKPGAKKAAAPTGE 844 K + A A+ A + A +G++ + Sbjct: 1051 VEKN------EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 845 TKPAEAAAPAAPAAPVKGLGMAS--GAKRPGAKKAAPPAAAAPEAAATASAPEAAA---A 899 T E A + + S K+ ++ P A A E T + E + Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 900 PAEPAAPAAPVKGLGIATGAKRPGAKKAPARAEAPAAAAPAQPEPEATPEPEPASKQDGE 959 A+ PA + + E P PA +P E K Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHR 1224 Query: 960 PTPPAAPAAP 969 + + P Sbjct: 1225 RSVRSVPHNV 1234 Score = 40.8 bits (95), Expect = 3e-05 Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 22/209 (10%) Query: 698 TDGVNDRQEEAGRSGVEV----LDVAQVLLGSLDREKATLPEKGTAAKEAEKRAKAAPKA 753 T N + +S V+ +VAQ GS +E T K TA E E++AK + Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQS--GSETKETQTTETKETATVEKEEKAKV--ET 1116 Query: 754 AAPAAPAPAPAEAPAKAAEAPAAATAASPAAPAKGLGMAGGAKRPGAKKAAPAPAAETAA 813 ++ K ++ A PA + A A+ + Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 814 AEAPAAPAKGLGMAAGAKKPGAKKAAAPTGETKPAEAAAPAAPAAPVKGLGMASGAKRPG 873 + + + G + P T+P + +S + Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPA-TTQPTVNSE-------------SSNKPKNR 1222 Query: 874 AKKAAPPAAAAPEAAATASAPEAAAAPAE 902 +++ E A T+S + A + Sbjct: 1223 HRRSVRSVPHNVEPATTSSNDRSTVALCD 1251
>FLAGELLIN#Flagellin signature. Length = 507 Score = 41.6 bits (97), Expect = 1e-05 Identities = 26/286 (9%), Positives = 58/286 (20%), Gaps = 2/286 (0%) Query: 566 IASQAGLAGQAGLAGQAGIASQAGIASQSGLAAGGSAGIASQAGLGIGGQAALGGQAGAA 625 +++Q G L+ + Q G + GL Sbjct: 125 VSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGD 184 Query: 626 VGGGLAGVGNVSGLTGIGGNASLGATGQAGLIASEGAALNGAATPHVSGPLGGVGVGGQA 685 + V + A + + + + + Sbjct: 185 LKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENN 244 Query: 686 GAAGGAGLGLGAGSRGGILSGDSTTLGGHPNPQPAALGAAGGTGIGAHSGAGGGMAAGLG 745 A + GG G + G ++ + Sbjct: 245 TAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTIN 304 Query: 746 GSAAGGAGVGL-GGSAAGGAGAEAAGGFGGGTHIGGQAGLGGSAAGGAGTELGGTAGSPG 804 G + G+A A + + + GQ + L + Sbjct: 305 GEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAK-LSDLEANNA 363 Query: 805 AGMGAGVGGGTHAGGQVGLGGGSTAGGQAGLGGGSSAGGSVGHGDI 850 + + G T G+ +++G S + Sbjct: 364 VKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINED 409
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 34.7 bits (80), Expect = 0.001 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 9/86 (10%) Query: 260 IRFSRNEFEQLITQPLDRFIGSVEDMLQRSGVPRPSLAA------VAAVGGGAAIPLIGN 313 + NE + + +PL + +V L++ P LA+ + GGGA + + Sbjct: 249 FTLNSNEILEALQEPLTGIVSAVMVALEQC---PPELASDISERGMVLTGGGALLRNLDR 305 Query: 314 RLSERLQVPVFTTAQPIFSAAIGAAM 339 L E +PV P+ A G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGGGK 331
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.0 bits (65), Expect = 0.020 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 196 EPLEEFRRKNDLVR-RHADAAQRDEAKIERAMAWTTPADADAYHR---EGVSLLTTEIQ 250 + ++K + + + +D A +E A TP D D EG+ L TE Sbjct: 243 KRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (284), Expect = 1e-32 Identities = 75/252 (29%), Positives = 111/252 (44%), Gaps = 12/252 (4%) Query: 1 MAGLTALITGATSGIGRATAHGLAELGATVLVSGRDEARGREVVDEVTARGGRGIFLAAE 60 + G A ITGA GIG A A LA GA + + + +VV + A A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 LRDVTGVRNLATAAADAGAGKVDILINSAGAFPFGPTADTSPDDFDAVFALNVRAPYFLV 120 +RD + + TA + G +DIL+N AG G S ++++A F++N + Sbjct: 66 VRDSAAIDEI-TARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 121 GALAPTMAKRGRGSIVNVTTMVAEFGAAGTGLYGASKAAIALLTKSWAAEYGPSGVRVNA 180 +++ M R GSIV V + A Y +SKAA + TK E +R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 181 VSPGPTRTE-----GTVEMGEA------LDQLAAAAPAGRPADPTEIASTIVYLASDAAS 229 VSPG T T+ E G L+ P + A P++IA +++L S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 230 FIHGAVVPVDGG 241 I + VDGG Sbjct: 245 HITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 64.3 bits (156), Expect = 6e-15 Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 1/158 (0%) Query: 12 VLSAARDEFRSHGYAATSVDSLAAATGLNRSSLYGSFGDKHRLFLRALDGYCEATLHDVR 71 +L A F G ++TS+ +A A G+ R ++Y F DK LF + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 72 EVLRERGVSARQRLINHVHAIVNGIVADTDRRGC-MMSRSSAELAGADPDVSGIVERSLE 130 E + L + ++ V + RR + E G V Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCL 135 Query: 131 AWRRELADCIAEAQLEGAVAGDGSPQALATVMLSLMQG 168 + + + D + A +M + G Sbjct: 136 ESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 106 bits (265), Expect = 1e-28 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 2 TRVLVIDDEPQILRALRINFSVRGYDVVTAATGAAALRAAAEQRPDVVILDLGLPDMSGI 61 +LV DD+ I L S GYDV + A R A D+V+ D+ +PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EVLAGLRGWFS-APVIVLSARSDSSDKVQALDAGADDYVTKPFGMDELLARLRAAVRR 118 ++L ++ PV+V+SA++ ++A + GA DY+ KPF + EL+ + A+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 134 bits (338), Expect = 9e-37 Identities = 74/368 (20%), Positives = 141/368 (38%), Gaps = 66/368 (17%) Query: 2 ARAVGIDLGTTNSVVAVLEGGDP-----VVVANSEGSRTTPSVVAFARNGEVLVGQPAKN 56 + + IDLGT N+++ V G VV + + + SV A VG AK Sbjct: 10 SNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA--------VGHDAKQ 61 Query: 57 QAVTNVD--RTIRSVKRHMGGDWSIEIDDKKYTAPEISARVLMKLKRDAEAYLGEDIADA 114 IR +K + D+ + ++ + ++ ++ Sbjct: 62 MLGRTPGNIAAIRPMKDGVIADF--------FVTEKMLQHFIKQVHSNS---FMRPSPRV 110 Query: 115 VITVPAYFNDAQRQATKDAGQIAGLNVLRIVNEPTAAALAYGLDKGEKEQTILVFDLGGG 174 ++ VP +R+A +++ Q AG + ++ EP AAA+ GL E + +V D+GGG Sbjct: 111 LVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS-MVVDIGGG 169 Query: 175 TFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRVVEWLVDKFKGTSGIDLTKDKMAMQRL 234 T +V+++ + V S +GGD +D+ ++ ++ + G Sbjct: 170 TTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSLIG------------- 211 Query: 235 REAAEKAKIELSSS----QSTSINLPYITVDAD--KNPLFLDEQLTRAEFQRITQDL--- 285 AE+ K E+ S+ + I + + + ++ A + +T + Sbjct: 212 EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAV 271 Query: 286 ---LDRTRKPFQSVIADTGISVSDIDHVVLVGGSTRMPAVTELVKELTGGKEPNKGVNPD 342 L++ S I++ G+ VL GG + + L+ E T G +P Sbjct: 272 MVALEQCPPELASDISERGM--------VLTGGGALLRNLDRLLMEET-GIPVVVAEDPL 322 Query: 343 EVVAVGAA 350 VA G Sbjct: 323 TCVARGGG 330
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 3e-04 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Query: 242 SGNIGNGNNGDGNLGGGNLGSYNLGWGNLGGANQGFGNAGSNNQGFANTGSNNQGFANTG 301 SG G G+N + GN+ G G GGA+ G G + NN +GS +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 302 SFNVGFGNTGSNNIGIGLSGDG-----KIGFGSLNS-GSGNIGLFNSG 343 N G G G + GF +L++ G+G + + S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 33.1 bits (75), Expect = 0.016 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 11/103 (10%) Query: 229 NVGTSNLGFGNIGSGNIGNGNNGDGNLGGGNLGSYNLGWGNLGGANQG-FGNAGSNNQGF 287 N G + GNI G G G G + G G S N WG G+ G +G N G Sbjct: 10 NTGAHSTS-GNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 288 ANTGSNNQGFANTGSFN---VGFG-----NTGSNNIGIGLSGD 322 G S V FG G+ + + +S Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.1 bits (75), Expect = 0.017 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 2024 NTGDGNIGFGNTGDGNIGIGLNGDGLRGFEALNSGTDNVGLFNSGTGNVGIGNSGTGNWG 2083 NTG + GN G G+G+ G G + G SG G G G Sbjct: 10 NTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 2084 IGNSGNYNTGVGNTGAANTGM 2104 GNSG + GN A + Sbjct: 69 -GNSGGGSGTGGNLSAVAAPV 88 Score = 32.8 bits (74), Expect = 0.020 Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 1/104 (0%) Query: 729 GFGNTGNGNIGFGNTGNGNIGIGLNGDGLQGFGGWNSGSGNIGLFNSGTDNVGIGNSGTG 788 G G+ + GN G G+G+ G G G + + G SG G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 789 NSGIGNTGSYNTGIGNVGVANTGLFNIGNLNT-GIGNPGNYNSG 831 + G TG VA F L+T G G S Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 32.4 bits (73), Expect = 0.026 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 754 GDGLQGFGGWNSGSGNIGLFNSGTDNVGIGNSGTGNSGIGNTGSYNTGIGNVGVANTGLF 813 GDG G +S SGNI N G +G+G + SG + + G G+ G Sbjct: 4 GDGRGHNTGAHSTSGNI---NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 814 NIGNLNTGIGNPGNYNSGAHNVGSTNT 840 GN GN G + N+ + Sbjct: 61 GHGNGGGN-GNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.028 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 1213 GDGLQGFGGWNSGSGNIGVFNSGTDNVGIGNSGTGNSGIGNSGSYNTGIGNSGLANTGLF 1272 GDG G +S SGNI N G +G+G + SG + + G SG+ G Sbjct: 4 GDGRGHNTGAHSTSGNI---NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG-- 58 Query: 1273 NSGSFNTGIGNVGSYNTGT 1291 SG N G +GT Sbjct: 59 GSGHGNGGGNGNSGGGSGT 77 Score = 32.0 bits (72), Expect = 0.031 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 1181 NTGSNNIGIGNTGDGNIGFGNTGNDNTGIGLNGDGLQGFGGWNSGSGNIGVFNSGTDNVG 1240 NTG+++ GN G G G G + G G + + GG SG G SG N G Sbjct: 10 NTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG--GSGHGNGG 66 Query: 1241 IGNSGTGNSGIGNSGS 1256 + G SG G + S Sbjct: 67 GNGNSGGGSGTGGNLS 82 Score = 32.0 bits (72), Expect = 0.033 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Query: 1191 NTGDGNIGFGNTGNDNTGIGLNGDGLQGFGGWNSGSGNIGVFNSGTDNVGIGNSGTGNSG 1250 NTG + GN TG+G+ G G G + + G SG G G G Sbjct: 10 NTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 1251 IGNSGSYNTGIGNSGLA 1267 + G TG S +A Sbjct: 69 GNSGGGSGTGGNLSAVA 85 Score = 32.0 bits (72), Expect = 0.037 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 722 NTGDNNIGFGNTGNGNIGFGNTGNGNIGIGLNGDGLQGFGGWNSGSGNIGLFNSGTDNVG 781 NTG ++ GN G G G G + G G + + GG SG G SG N G Sbjct: 10 NTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG--GSGHGNGG 66 Query: 782 IGNSGTGNSGIGNTGS 797 + G SG G S Sbjct: 67 GNGNSGGGSGTGGNLS 82
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 0.009 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 251 NTGNNNIGFGNTGDNNRGIGLTGTGQFGLGGLNSGSGNIGLFNSGTGNFGIGNSGTGNWG 310 NTG ++ GN G+G+ G G G + + G SG G G G Sbjct: 10 NTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 311 IGNSGNSYNTGIGNSGDA 328 GNSG TG S A Sbjct: 69 -GNSGGGSGTGGNLSAVA 85 Score = 32.4 bits (73), Expect = 0.036 Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 3/89 (3%) Query: 250 GNTGNNNIGFGNTGDNNRGIGLTGTGQFGLGGLNSGSGNIGLFNSGTGNFGIGNSGTGNW 309 G+ +N G +T N G TG GG + GSG N G G G G Sbjct: 4 GDGRGHNTGAHSTSGNING---GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 310 GIGNSGNSYNTGIGNSGDANTGFFNAGVA 338 G GN G + N+G G+ N A VA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 4e-06 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 30/184 (16%) Query: 550 AGRMLEGETAKLLRMEDEL--GHRVIGQKKAVQAVSDAVRRSRAGVADPNRPTGSFMFLG 607 GR L + ++ED+ G ++G+ A+Q + + R + + M G Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITG 167 Query: 608 PTGVGKTELAKALAEFLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYIGYDQGGQLTEA 667 +G GK +A+AL ++ V I+M+ + L G + G T A Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGA 219 Query: 668 VRRRPYTV-------ILFDEIEKAHPDVFDVLLQVLDEG---RLTDGQGRTVDFRNTILI 717 R + DEI D LL+VL +G + D R ++ Sbjct: 220 QTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IV 276 Query: 718 LTSN 721 +N Sbjct: 277 AATN 280
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.5 bits (68), Expect = 0.008 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 201 PLPQESPQEAEESEPAQSGNRSLTPSRRPELPPRRAQVDPAAGLLPDASRRTPEPMRREE 260 PLP+ SP E + PA + N P+ P+ P +P P +P R Sbjct: 327 PLPEVSPAENPANNPAPNENPGTRPNPEPD-PDLNPDANPDTDGQPGTRPDSPAVPDRPN 385 Query: 261 GRSEGSRR 268 GR R+ Sbjct: 386 GRHRKERK 393
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 68.9 bits (168), Expect = 5e-16 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 4/184 (2%) Query: 5 VALITGPTSGIGAGYARRYAQDGYDLILVARDVDRLKQLAVELEDDAGNVEILPADLADA 64 +A ITG GIG AR A G + V + ++L+++ L+ +A + E PAD+ D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 65 AGRDKVAERLSR---GVRVLVNNAGFATSGEFWETEPAALQAQLDVNVTAVMQLTRAALP 121 A D++ R+ R + +LVN AG G +A VN T V +R+ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 122 PMLAAGAGTVINIAS-VAGLLSGRGSTYSASKAWVISFSEGLSTGLEGTGVGVHAVCPGY 180 M+ +G+++ + S AG+ + Y++SKA + F++ L L + + V PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 181 VHTE 184 T+ Sbjct: 190 TETD 193
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.1 bits (73), Expect = 0.004 Identities = 39/166 (23%), Positives = 59/166 (35%), Gaps = 16/166 (9%) Query: 242 FAWLPVIVTSAGGSEALGGAMVATFSGVGFLATLVTPRLCARAANPFPIVAASALCFLVG 301 F W + G S A G + + + V RL R A ++A L+ Sbjct: 241 FHWDATTI---GISLAAFGILHSLAQA--MITGPVAARLGERRALMLGMIADGTGYILLA 295 Query: 302 FAGLLWAPLTAPIVWAIFLGLGPSTFPAAITLINLRSRTESGSAALSGFTQGMGYLLASP 361 FA W PI+ + L G PA +++ + E L G + L + Sbjct: 296 FATRGWMAF--PIM--VLLASGGIGMPALQAMLSRQVDEER-QGQLQGSLAALTSLTSIV 350 Query: 362 GPLIFGILYNATGR------WELSFGFLLVPLIALLAGGYHACKPR 401 GPL+F +Y A+ W L+ L AL G + R Sbjct: 351 GPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQR 396
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 4e-04 Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 431 TGGHGAAGAVAGGDGGRGGTGGGLAGSGGTGGNGAVGTVSGVGGDGGNAAGLFGDGGTGG 490 TG H +G + GG G G GG GSG + N G SG G G +G G+GG G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG-HGNGGGNG 69 Query: 491 NGGLATAGGAGGDGGAGGKAALIGSGGNGGAGGSG 525 N G + G A A + GAGG Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.2 bits (83), Expect = 7e-04 Identities = 37/136 (27%), Positives = 50/136 (36%) Query: 802 GGAGGTGGGAATLFGAGGAGGAGAIGLDTGGAGGAGGSAGALSGTGGAGGAGGIGVGGGG 861 GG G A GG +G+ G + G+G S+ GG+G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 862 GGGGVGGAGGNAGVVYGDGGAGGAGGGGTVAAGAAGGSGGNAAMLFGNGGAGGTGAVGAA 921 G GG G G G+ A A A + G+GG A + + + AA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 922 VGGNGGTGGDGGGLSG 937 + G G G L G Sbjct: 123 LKGPFKFGLWGVALYG 138 Score = 35.5 bits (81), Expect = 0.001 Identities = 40/128 (31%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 642 LSGGAGVGGTGGIGAVLGGAGGTGGMAGLFGAGGAGGEGGGGQSGGAGGAGGVGLFGAGG 701 +SGG G G G + G G G+ G G + G G ++ GG G G+ GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGV-GGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 702 NGGTGGFSLVTGGAGGAGGASLLSGNGGAGGAGGIGGTGAGGAGGDGGAAGAFSGNGGAG 761 +G G GG G +GG S GN A A G A G GG A + S + Sbjct: 60 SGHGNG-----GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114 Query: 762 GAGGIAPA 769 I A Sbjct: 115 AIADIMAA 122 Score = 34.3 bits (78), Expect = 0.003 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 724 LSGNGGAGGAGGIGGTGAGGAGGDGGAAGAFSGNGGAGGAGGIAPAGTEGGAGGAGGNAG 783 +SG G G G T GG G + G+G + P G GG+G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG--GGSGSGIHWGG 58 Query: 784 VFSGTGGAGGAGGAGQTVGGAGGTGGGAATLFGAGGAGGAGAIGLDTGGAGGAGGSAGA 842 G G G + G + A FG GA GL + GA +A A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 34.3 bits (78), Expect = 0.003 Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 2/119 (1%) Query: 737 GGTGAGGAGGDGGAAGAFSGNGGAGGAGGIAPAGTEGGAGGAGGNAGVFSGTGGAGGAGG 796 GG G G G +G +G G GG A G+ G G SG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGGS 60 Query: 797 AGQTVGGAGGTGGGAATLFGAGGAGGAGAIGLDTGGAGGAGGSAGALSGTGGAGGAGGI 855 GG G +GGG+ T A G GAGG A ++S + I Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 34.3 bits (78), Expect = 0.003 Identities = 39/109 (35%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 115 GNGANGAAGTGASGGDGGILIGNGGAGGSGATGLTGGAGGNGGAAGLLAGTAGAGGSGGL 174 G G N A + + +GG G G S +G + GG +G +G GGSG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG--SGIHWGGGSGHG 63 Query: 175 GAAGAGGAGGQGGTGGLFSAGGAGGTGGVGASGGTGGAGGLGLFGAGGA 223 G G +GG GTGG SA A G A T GAGGL + + GA Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPAL-STPGAGGLAVSISAGA 111 Score = 34.3 bits (78), Expect = 0.003 Identities = 36/108 (33%), Positives = 44/108 (40%), Gaps = 2/108 (1%) Query: 774 GAGGAGGNAGVFSGTGGA-GGAGGAGQTVGGAGGTGGGAA-TLFGAGGAGGAGAIGLDTG 831 G G G N G S +G GG G G G + G+G + +G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 832 GAGGAGGSAGALSGTGGAGGAGGIGVGGGGGGGGVGGAGGNAGVVYGD 879 G GG G++G SGTGG A V G GAGG A + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.9 bits (77), Expect = 0.004 Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 10/115 (8%) Query: 676 AGGEGGGGQSGGAGGAGGVGLFGAGGNGGTGGFSLVTGGAGGAGGASLLSGNGGAGGAG- 734 +GG+G G +G +G + NGG G + G + G+G +S + GG G+G Sbjct: 2 SGGDGRGHNTGAHSTSGNI-------NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI 54 Query: 735 GIGGTGAGGAGGDGGAAGAFSGNGGAGG--AGGIAPAGTEGGAGGAGGNAGVFSG 787 GG G GG G +G SG GG A +A GAGG A S Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 33.5 bits (76), Expect = 0.004 Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Query: 905 MLFGNGGAGGTGAVGAAVGGNGGTGGDGGGLSGSGGAGGNGAGGGTGGTGGDGGRARGLL 964 M G+G TGA + NGG G G G S G+G + GG G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 965 GDGGTGGDGGFGGITSGDGGNGGTGALIGDG----GNGGAGGIGLGAAPG 1010 G G GG+G GG + G A + G GAGG+ + + G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.8 bits (74), Expect = 0.007 Identities = 24/75 (32%), Positives = 31/75 (41%) Query: 196 GAGGTGGVGASGGTGGAGGLGLFGAGGAGGAGGMANATVGGTGGAGGASLLFGNGGAGGL 255 G G G ++ G G GL GGA G ++ GG+G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 256 GGGGATAGGAGGQGG 270 GG G + GG+G G Sbjct: 66 GGNGNSGGGSGTGGN 80 Score = 32.4 bits (73), Expect = 0.010 Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 940 GAGGNGAGGGTGGTGGDGGRARGLLGDGGTGGDGGFGGITSGDGGNGGTGALIGDGGNGG 999 G G G G T G+ LG GG DG + G GG+G+ I GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSG 61 Query: 1000 AGGIGLGAAPGGDGGKGGDAQLVGTGGNGGILGLGLP 1036 G G GG G GG+ V G L P Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTP 98 Score = 32.4 bits (73), Expect = 0.010 Identities = 29/84 (34%), Positives = 35/84 (41%) Query: 212 AGGLGLFGAGGAGGAGGMANATVGGTGGAGGASLLFGNGGAGGLGGGGATAGGAGGQGGD 271 +GG G GA G N G G GGAS G GGG+ +G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 272 AGTFYGDGGVGGAGGAGGNIPGSS 295 G G+G GG G GGN+ + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.4 bits (73), Expect = 0.012 Identities = 36/106 (33%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 127 SGGDG----GILIGNGGAGGSGATGLTGGAGGNGGAAGLLAGTAGAGGSG-GLGAAGAGG 181 SGGDG G G TGL G G + G+ GGSG G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 182 AGGQGGTGGLFSAGGAGGTGGVGASGGTGGAGGLGLFGAGGAGGAG 227 G GG G +GG GTGG ++ A G GAGG Sbjct: 62 HGNGGGNGN---SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.4 bits (73), Expect = 0.012 Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 865 GVGGAGGNAGVVYGDGGAGGAGGGGTVAAGAAGGSGGNAAMLFGNGGAGGTGAVGAAVGG 924 G G G N G G G G V GA+ GSG ++ N GG G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSE----NNPWGGGSGSGIHWGG 58 Query: 925 NGGTGGDGGGLSGSGGAGGNGAGGGTGGTGGDGGRARGLLGDGGTG 970 G G GG + GG+G G G A G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.014 Identities = 32/105 (30%), Positives = 37/105 (35%) Query: 397 GDGGAGGAGGIGGAAAGGKGGDGGDAATLFGSGGTGGHGAAGAVAGGDGGRGGTGGGLAG 456 G G GA G GG G G GSG + + G +G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 457 SGGTGGNGAVGTVSGVGGDGGNAAGLFGDGGTGGNGGLATAGGAG 501 G G GT + A F T G GGLA + AG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.6 bits (71), Expect = 0.021 Identities = 30/83 (36%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 310 GDGGAGGTGGVATSAGGAGGAGGNAADLVGTGGVGGAGGTSFDAGGAGGIGGSAGALFGA 369 GDG TG +TS GG G L GG G S + GG GS G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTG----LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 370 GGAGGAGGFGQVSGGAGGAGGNS 392 G G GG G GG+G G S Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLS 82 Score = 31.2 bits (70), Expect = 0.024 Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 618 AGGSGAVNGLGTGQAGGN--GGAAGLLSGGAGVGGTGGIGAVLGGAGGTGGMAGLFGAGG 675 +GG G + G GN GG GL GG G+G GG+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 676 AGGEGGGGQSGGAGGAGGVGLFGAGGNGGTGGFSLVTGGAGGAG 719 G GGG + G G G L G +L T GAGG Sbjct: 62 HGN-GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.026 Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 3/127 (2%) Query: 287 AGGNIPGSSGGAGGAGGNAGLFHGDGGAGGTGGVATSAGGAGGAGGNAADLVGTGGVGGA 346 +GG+ G + GA GN +G G GG A+ G G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGN---INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 347 GGTSFDAGGAGGIGGSAGALFGAGGAGGAGGFGQVSGGAGGAGGNSGMVYGDGGAGGAGG 406 G + GG G GG +G FG + GAGG + + + Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Query: 407 IGGAAAG 413 I A G Sbjct: 119 IMAALKG 125 Score = 30.8 bits (69), Expect = 0.034 Identities = 35/119 (29%), Positives = 41/119 (34%), Gaps = 8/119 (6%) Query: 457 SGGTGGNGAVGTVSGVGGDGGNAAGLFGDGGTGGNGGLATAGGAGGDGGAGGKAALIGSG 516 SGG G G S G G GL GG G ++ G G G GSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 517 GNGGAGGSGTVDPGGNGGRGGDAQLFGTGGNGGNPGLGVPAGTAGEAGAPGLATSNQAL 575 G G + GG G GG+ G P L P AG ++ S AL Sbjct: 62 HGNGGGNGNS---GGGSGTGGNLSAVAAPVAFGFPALSTPG-----AGGLAVSISAGAL 112 Score = 30.8 bits (69), Expect = 0.035 Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Query: 355 GAGGIGGSAGALFGAGGA-GGAGGFGQVSGGAGGAGGNSGMVYGDGGAGGAGGIGGAAAG 413 G G G + GA +G GG G G G + G+G +S GG+G GG + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 414 GKGGDGGDAATLFGSGGTGGHGAAGAVAGGDGGRGGTGGGLAGS 457 G GG G++ G+GG AA G GGLA S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 30.5 bits (68), Expect = 0.039 Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 885 AGGGGTVAAGAAGGSGGNAAMLFGNGGAGGTGAVGAAVGGNG--GTGGDGGGLSGSGGAG 942 +GG G A + GN NGG G G G A G+G GG SGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNI-----NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 943 GNGAGGGTGGTGGDGGRARGLLGDG 967 G G+G G GG G+ G G G+ Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNL 81
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 57.4 bits (138), Expect = 1e-11 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 22/210 (10%) Query: 21 GRVVVVTGANTGLGYHTAEALAGRGAHVVLAVRNPEKGNAAVAQIVAAKPQADVTLQALD 80 G++ +TGA G+G A LA +GAH+ NPEK V+ + A A+ D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF--PAD 65 Query: 81 LSSLDSVRSAADALRSAYPRIDLLINNAGV--MWTPKQVTKDGFEMQFGTNHLGHFALTG 138 + ++ + ID+L+N AGV ++ + +E F N G F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 139 LLLDHLLPVPGSRVITV-SSLGHRIRAAIHFDDLQWERSYNRVAAYGQSKLANLLFTYEL 197 + +++ ++TV S+ R ++ AAY SK A ++FT L Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSM--------------AAYASSKAAAVMFTKCL 171 Query: 198 QRRLAADSQAATIAVAAHPGGSNTELARNL 227 LA + I PG + T++ +L Sbjct: 172 GLELAEYNIRCNI---VSPGSTETDMQWSL 198
>PF06917#Periplasmic pectate lyase Length = 555 Score = 30.7 bits (69), Expect = 0.017 Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 193 FDKGYISGYFVTDAERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIQGG 242 F + Y G FV A+ + +++P L + + ++ +D L + + I G Sbjct: 477 FKRHYHRGLFVESAQHRYFRIDNPIALALLTLIAAKQDKLAAIPQFITNG 526
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 0.001 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 7/94 (7%) Query: 231 GSGNTGNSNVGLGNLGSGNVGFGNTGNGDFGFGLTGDHQFGFGGFNSGSGNVGIGNSGTG 290 G G+ ++ GN+ G G G G G G + ++ GG SG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG-- 63 Query: 291 NVGFFNSGNGNMGIGNSGSLNSGLGNSGSMSTGF 324 N G G SG+ + + ++ GF Sbjct: 64 -----NGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92 Score = 30.5 bits (68), Expect = 0.016 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 266 GDHQFGFGGFNSGSGNVGIGNSGTGNVGFFNSGNG--NMGIGNSGSLNSGLGNSGSMSTG 323 GD + G +S SGN+ G +G G G + G+G + G SG+ G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 324 FGTASMSSGMWQSMHGSDMASSTSLA----SSATYATGGTA-TLSSGILSSALA 372 G + +SG G+ A + +A + +T GG A ++S+G LS+A+A Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 30.1 bits (67), Expect = 0.023 Identities = 24/83 (28%), Positives = 34/83 (40%) Query: 197 TGNVGNNNVGNNNWGSGNTGSSNVGTGNTGSSNIGSGNTGNSNVGLGNLGSGNVGFGNTG 256 +G G + + SGN G G G ++ GSG + +N G GSG G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 257 NGDFGFGLTGDHQFGFGGFNSGS 279 +G+ G G GG S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAV 84 Score = 29.7 bits (66), Expect = 0.028 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 3/95 (3%) Query: 195 SGTGNVGNNNVGNNNWGSGNTGSSNVGTGNTGSSNIGSGNTGNSNVGLGNLGSGNVGFGN 254 SG N G +G S +G S+ G S G G S G GN G G Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS--GHGNGGGNGNSGGG 74 Query: 255 TGNGDFGFGLTGDHQFGFGGFNS-GSGNVGIGNSG 288 +G G + FGF ++ G+G + + S Sbjct: 75 SGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 52.8 bits (127), Expect = 3e-09 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 13/100 (13%) Query: 4 DLLIRNGTIVDGLGGEPYVGDVAVRDGIIVAVGP---PD--DSVN--GDAAGRVIDASGL 56 D +I N I+D G D+ ++DG I A+G PD V VI G Sbjct: 69 DTVITNALILDHWG--IVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGK 126 Query: 57 LVTPGFVDLHTHYDGQSIWSDRLTPSSAHGVTTVLMGNCG 96 +VT G +D H H+ I ++ + G+T +L G G Sbjct: 127 IVTAGGMDSHIHF----ICPQQIEEALMSGLTCMLGGGTG 162
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 46.0 bits (109), Expect = 8e-07 Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 13/209 (6%) Query: 724 AQGIASIDQIRTAAEESLKGTPLEDAKIYVAGTASVFKDIS-EGADWDLLIAGISSLCLI 782 A + + I+ A L+ + K+ + F +S L A + L+ Sbjct: 297 ANALDTAKAIK-AKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIM----LV 351 Query: 783 FIIMLILTRAFVAAAVIVGTVALSLGASFGMSVLLWQHILNIDLHYMVLAMSVIVLLAVG 842 F++M + + A + V + L +F + I + + MVLA+ ++V A+ Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 843 SDYNLLLVSRFKEEIPAGLKTGIIRAMGGTGKVVTNAGLVFAFT---MASMAVSDLRVIG 899 N V R E K ++M + +V + MA S + Sbjct: 412 VVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 900 QVGTTIGLGLLFDTLIVRAFMTPSIAALL 928 Q TI + +++V +TP++ A L Sbjct: 469 QFSITIVSAMAL-SVLVALILTPALCATL 496 Score = 44.4 bits (105), Expect = 2e-06 Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 21/225 (9%) Query: 208 VAVIFIMLLLVYRSVITVVVLLLTVGVELTAARGVVALLGHSGAIGLSTFAVSLLTSLAI 267 + ++F+++ L +++ ++ + V V L ++A G+S L+ F + L AI Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT-LTMFGMVL----AI 402 Query: 268 AAGTDYGIFIFGRYQEARQAGEDKETAFYTMYRGTAHV---ILGSGLTIAGA---TFCLK 321 D I + + EDK + + + ++G + ++ Sbjct: 403 GLLVDDAIVVVENVERVMM--EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 322 FARMPYFETLGIPCAVGMLVAVMVALTLGPA----VLTVGSRFGLFDPKRLIKV--RGWR 375 + + I M ++V+VAL L PA +L S + + Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFD 520 Query: 376 RVGTVVVRWPLPVLAATLA--VALVGLLALPGYRTNYNDRDYLPN 418 +L +T + ++A +LP Sbjct: 521 HSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPE 565 Score = 39.4 bits (92), Expect = 9e-05 Identities = 46/222 (20%), Positives = 81/222 (36%), Gaps = 13/222 (5%) Query: 144 YVQLNLAGNQGEPLANESVEAVRKIVK--ETPAPPGVTTYVTGAAALVSDMHSSGDKSMI 201 Y L QGE S +++ + P G+ TG + SG+++ Sbjct: 818 YNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTG---MSYQERLSGNQAPA 874 Query: 202 KITVTTVAVIFIMLLLVYRSVITVVVLLLTVGVELTAARGVVALLGHSGAIGLSTFAVSL 261 + ++ V+F+ L +Y S V ++L V L ++A + + F V L Sbjct: 875 LVAIS-FVVVFLCLAALYESWSIPVSVMLV--VPLGIVGVLLAATLFNQKNDV-YFMVGL 930 Query: 262 LTSLAIAAGTDYGIFIFGRYQEARQAGEDKETAFYTMYRGTAHVILGSGLTIAGATFCLK 321 LT++ ++A I F + + G+ A R IL + L L Sbjct: 931 LTTIGLSAKNAILIVEFAK-DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 322 FARMPYFET---LGIPCAVGMLVAVMVALTLGPAVLTVGSRF 360 + +GI GM+ A ++A+ P V R Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.0 bits (158), Expect = 7e-15 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 4/168 (2%) Query: 33 RTEENKRQRAAALVEAARSMASETGVASVTLTAVASRAGIHYSAVRRYFTSHKEVLLHLA 92 +T++ ++ +++ A + S+ GV+S +L +A AG+ A+ +F ++ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 93 AEGWQRWSNTVCGELSQPGPMTESRVAAALADGLAAD---PLFCDLLANLHLHLEHEVEV 149 ++ S + L L + L+ + E E+ Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 150 DRVVEVKRTSTAAVIAL-ADAIENALPALGRAGAFDVLLAAYSLGATL 196 V + +R +++ + A AA + + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 56.0 bits (135), Expect = 6e-10 Identities = 45/283 (15%), Positives = 93/283 (32%), Gaps = 54/283 (19%) Query: 175 QGEAKANESVDAVRELVNDTPA--PPGVKAYVTGPAALIADQSTAGDASIQRV------- 225 A A ++ A++ + + P G+K D + SI V Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYP------YDTTPFVQLSIHEVVKTLFEA 347 Query: 226 TFITIGVIFVMLLSVYRSLITVISVLVMVGIELMAARGVVAFLADNNVIGLSTFAVNLLV 285 + V+++ L ++ +LI I+V V++ ++ +++N L Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFA-------------ILAAFGYSINTLT 394 Query: 286 LMAIAAGT----DYAIFVLGRYQEARGEGESREKAFYTMFHGTAHV---VLGSGLTIAGA 338 + + D AI V+ + E + K + + ++G + ++ Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKE--ATEKSMSQIQGALVGIAMVLSAV 452 Query: 339 ---MYCLSFTRLPYFQTLGAPCAVGMLVAVLAALTLGPAVLVV-------------GSFF 382 M + ++ M ++VL AL L PA+ G FF Sbjct: 453 FIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFF 512 Query: 383 KLFDPKRKMRTRGWRRVGTAIVRWPGPILAVSIAIALIGLLAL 425 F+ + I+ G L + I + G++ L Sbjct: 513 GWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALI-VAGMVVL 554 Score = 45.2 bits (107), Expect = 2e-06 Identities = 32/159 (20%), Positives = 68/159 (42%), Gaps = 17/159 (10%) Query: 800 AVSLILIIMLIITRSLVAAVVIVGTVLLSLGASFGLSVLVWQDIFGVELHWMVLAMSVIL 859 A+ L+ ++M + +++ A ++ V + L +F + FG ++ + + + Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAA-----FGYSINTLTMFG---M 398 Query: 860 LLAVGS--DYNLLLV---SRLKEEIGAGLKTGIIRAMAGTGGVVTTAGLVFAAT---MAS 911 +LA+G D +++V R+ E K ++M+ G + +V +A MA Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 912 FIFSDLRVIGQVGTTIGLGLLFDTLIVRSFMTPSIAALM 950 F S + Q TI + L+ TP++ A + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALIL-TPALCATL 496 Score = 33.3 bits (76), Expect = 0.005 Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 16/216 (7%) Query: 175 QGEAKANESVDAVRELVNDTPA--PPGVKAYVTGPAALIADQSTAGDASIQRVTFITIGV 232 QGEA S L+ + + P G+ TG + ++ + A + I+ V Sbjct: 827 QGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSY--QERLSGNQAPA--LVAISFVV 882 Query: 233 IFVMLLSVYRSLITVISVLVMVGIELMAARGVVAFLADNNVIGLSTFAVNLLVLMAIAAG 292 +F+ L ++Y S I V VM+ + L ++A N + F V LL + ++A Sbjct: 883 VFLCLAALYESWS--IPVSVMLVVPLGIVGVLLAATLFNQKNDV-YFMVGLLTTIGLSAK 939 Query: 293 TDYAIFVLGRYQEA-RGEGESREKAFYTMFHGTAHVVLGSGLTIAGAMYCLSFTRLP--- 348 AI ++ ++ EG+ +A +L + L + L+ + Sbjct: 940 N--AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 349 YFQTLGAPCAVGMLVAVLAALTLGPAV-LVVGSFFK 383 +G GM+ A L A+ P +V+ FK Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 28.7 bits (64), Expect = 0.015 Identities = 11/20 (55%), Positives = 16/20 (80%) Query: 163 TALSLALMSAPFASVAAAAP 182 TA+++A+ A FA+VA AAP Sbjct: 4 TAIAIAVALAGFATVAQAAP 23
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 29.3 bits (66), Expect = 0.024 Identities = 19/105 (18%), Positives = 35/105 (33%) Query: 197 LDIIEIILAILINLIAITFFLVFAIIAYTIIFAILLIPILIALAFSVVVFAFYIAIAIII 256 L + +NL V A+I+ I + +P + L ++++ Sbjct: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 Query: 257 VTPPLLAALLPVALVSSLIGIPIALATTLPIALPVGIGQYLADQT 301 P L +A+ LIGI + A G+ + Q Sbjct: 62 DVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQM 106
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.1 bits (114), Expect = 5e-09 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 16/183 (8%) Query: 17 RRWHQHKVERRNELVDGTIVAIRRHGRF-LSMDEIAAEIGVSKTVLYRYFVDKNDLTTAV 75 R+ Q E R ++D + + G S+ EIA GV++ +Y +F DK+DL + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 76 M---MRFAQTTLIPNMAAALSSNLDGFDLAREIIRVYVETVAAEPEPYRFVMANSSASKS 132 + A L REI+ +E+ E + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVL---REILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 133 ----KVIADSERIIA---RMLAVMLRRRMAEAGMDTGGVEP--WAYLIVGGVQLATHSWM 183 V+ ++R + + EA M + A ++ G + +W+ Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179 Query: 184 SDP 186 P Sbjct: 180 FAP 182
>cloacin#Cloacin signature. Length = 551 Score = 39.7 bits (92), Expect = 1e-04 Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 1723 NGGDG-GHGNGSNIAGGNGGSGGDGGTGATGGAGGRGGAGGNGFNNGGDGGNGGNGGSGG 1781 +GGDG GH G++ GN G G G + G G + N GG G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1782 NGVVRGNGGSGGNAGNGGNG 1801 +G GNG SGG +G GGN Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 39.3 bits (91), Expect = 2e-04 Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 1562 LGGAGGAGGNGGVTAASNIVTGNGGNGGNGGNGGPGNSSTGGNSGNGGGGGLG-GYGATG 1620 + G G G N G + S + G G GG G+ + N+ GGG G G +G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1621 GTGGKGGNGGSGGIGGNGGNGGFGGGGTIRGDGGNGGNGGNGIGAGMDGGA 1671 G G GGNG SGG G GGN G G G+ + GA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 38.2 bits (88), Expect = 4e-04 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Query: 1857 NGGNGNTGGTGGRGGNGGANGAVHGGDGGNGGKGGNGVIAGAGGDGGTGGAGGGFQATGG 1916 +GG+G TG +G NG G G G G+G + GG G+G + G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1917 SGGDGGAGGSGTTGGTGGRGGAGGAADGF----RATGGAGGTG 1955 G GG G SG GTGG A A F +T GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.4 bits (86), Expect = 7e-04 Identities = 30/89 (33%), Positives = 38/89 (42%) Query: 333 GGGGAGGTGGAGGAAGLIGHGGAGGGGGAGDGGSTGGAGQTGGDGGRAGDGGVGGRGGWL 392 GG G G GA +G I G G G G G +G + + GG +G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 393 AGAGGDGGAGGAGGVGGAGGGGADGLVLG 421 GG+G +GG G GG A + G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 35.5 bits (81), Expect = 0.003 Identities = 24/71 (33%), Positives = 29/71 (40%) Query: 1545 GGAGGAGGNGGNGRNGGLGGAGGAGGNGGVTAASNIVTGNGGNGGNGGNGGPGNSSTGGN 1604 GA GN G G G G + G+G + + G+G GG G GN GN Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 1605 SGNGGGGGLGG 1615 SG G G G Sbjct: 71 SGGGSGTGGNL 81 Score = 35.5 bits (81), Expect = 0.003 Identities = 29/79 (36%), Positives = 32/79 (40%) Query: 1612 GLGGYGATGGTGGKGGNGGSGGIGGNGGNGGFGGGGTIRGDGGNGGNGGNGIGAGMDGGA 1671 G G G G GN G G G G G G + GG G+GI G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1672 GGKGGEGLTGGNGGNGGNG 1690 G GG G +GG G GGN Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 0.003 Identities = 25/83 (30%), Positives = 33/83 (39%) Query: 1104 SAGGAGGYGGNGGALAGDGGDGGDGGNGGSGGDGGSGANGGAGDNGTTTSPNGGRGGDGG 1163 S G G+ + +G+ G G G G GSG + G + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1164 HGGHGGDGGAGGHGGVAGKAQAA 1186 HG GG+G +GG G G A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAV 84 Score = 35.1 bits (80), Expect = 0.003 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Query: 1287 GAGGHGGDGGAFGDGGN--GGDGGTGGTGTAATTAGSPGAVGGHGGAGGNGGDGGYLNGN 1344 G G G + GA GN GG G G G A+ +G GG G+G G +G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1345 AGNGGSGGAGGTGGAGATGTSQAAATGLGGGRGGDGGAGGAG 1386 GG+G +GG G G ++ AA G GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.1 bits (80), Expect = 0.003 Identities = 26/85 (30%), Positives = 31/85 (36%) Query: 1670 GAGGKGGEGLTGGNGGNGGNGDNGVNGSNGGNGGKGGNAGNGTVVTGLGGNGGNGGDGGH 1729 G G+G GN G G+ G + G G ++ N G G GG GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1730 GNGSNIAGGNGGSGGDGGTGATGGA 1754 GNG GGSG G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 35.1 bits (80), Expect = 0.004 Identities = 27/84 (32%), Positives = 35/84 (41%) Query: 1347 NGGSGGAGGTGGAGATGTSQAAATGLGGGRGGDGGAGGAGGDGGNGGKAHATGFHNGTGG 1406 +GG G TG +G TGLG G G G+G + + GG + + G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1407 QGGDGGQGGKAGNGGNGADGQAAA 1430 G GG G G G G + A A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 35.1 bits (80), Expect = 0.004 Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 1700 GNGGKGGNAGNGTVVTGL-GGNGGNGGDGGHGNGSNIAGGNGGSGGDGGTGATGGAGGRG 1758 G G+G N G + + GG G G GG +GS + N GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1759 GAGGNGFNNGGDGGNGGNGGSGGNGVVRG 1787 G GG N+GG G GGN + V G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 34.7 bits (79), Expect = 0.004 Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 877 GFAGGGGGAGGAGGAGGTQAGAGGAGGDGGAGGTGGFGGS-GANGGAGDHGTAANPNGGR 935 G G G G +G G G G GGA G+ GG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 936 GGDGGSGAAGGAGGDGGNGGAGGQAQAAGY-ADGTRGAGGNGGVGGAGGLA 985 G GG+G +GG G GGN A A G+ A T GAGG AG L+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 34.7 bits (79), Expect = 0.005 Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 431 GTGGAGGTGGAGGAGGLISFFGGQGAGGAGGAGGAGGLAGDGGVGATGTFAGGGSGTGGA 490 G G G GA G I+ GG G G GG + G + GGGSG+G Sbjct: 3 GGDGRGHNTGAHSTSGNIN-------GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 491 GGDGGTPGVGGAGGAGGAGSIAGAHGSEGARPLS 524 G G G GG G G GS G + S A P++ Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 34.3 bits (78), Expect = 0.006 Identities = 21/71 (29%), Positives = 27/71 (38%) Query: 1535 GGSGGTGDVTGGAGGAGGNGGNGRNGGLGGAGGAGGNGGVTAASNIVTGNGGNGGNGGNG 1594 G +G++ GG G G GG G G G + GNGG GN Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 1595 GPGNSSTGGNS 1605 G G+ + G S Sbjct: 72 GGGSGTGGNLS 82 Score = 33.9 bits (77), Expect = 0.008 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 295 AGGQGMGLDGGAGGGGGQGGLIYGGGGDGGAGGVGGEVGGGGAGGTGGAGGAAGLIGHGG 354 +GG G G + GA G I GG G GG + G + GG+ I GG Sbjct: 2 SGGDGRGHNTGAHSTSGN---INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 355 AGGGGGAGDGGSTGGAGQTGGDG 377 G G G G++GG TGG+ Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.008 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 542 IAGDGGVGGNGGVFGNGGTGGAGGTGIAGQRGVSADTPGGSGTAGEDGGVGGNGGAGGLG 601 ++G G G N G G G TG+ GV GSG + E+ GG G+G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGL----GVGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 602 GALAGHGGDGGAGGTGGDGGAGGSGAAGTA 631 G +GHG GG G +GG G GG+ +A A Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.010 Identities = 32/102 (31%), Positives = 35/102 (34%) Query: 260 GGGGDGGAGGVGALSGGVGGAAGRAWLWGAGGAGGAGGQGMGLDGGAGGGGGQGGLIYGG 319 GG G G G + SG + G + G G GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 320 GGDGGAGGVGGEVGGGGAGGTGGAGGAAGLIGHGGAGGGGGA 361 G GG G GG G GG A A G G GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.5 bits (76), Expect = 0.011 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 1983 VAGSGGNGGNGGIGATGG--NAGRGGDGGSSTGFGGGGGMGGNGGTGGLGNAGYGGYGGD 2040 ++G G G N G +T G N G G G G G N GG +G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 2041 GGKGGDGGDTGGGVGRSGGTG 2061 G G G GG +GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 32.8 bits (74), Expect = 0.015 Identities = 27/80 (33%), Positives = 29/80 (36%) Query: 706 TGGGAGGDGGHGGDTGTGGAGGSGGAGSSNGLSGLSGHSPTSGGDGGAGGDGGDSPATGG 765 +GG G T GG G G G S SG S + GG G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 766 RGGAGGNGGKYGNGGAGGAG 785 G GGNG G G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 32.8 bits (74), Expect = 0.018 Identities = 31/81 (38%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 1067 GAYGNGGDGGDGGDGVNGTRGLTAITPGGSGTDGSAGSAGGA--GGYGGNGGALAGDGGD 1124 G G G + G N G T + GG +DGS S+ GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1125 GGDGGNGGSGGDGGSGANGGA 1145 G GGNG SGG G+G N A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 32.4 bits (73), Expect = 0.021 Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 1970 NGGKGGGATDLESVAGSGGNGGNGGIGATGGNAGRGGDGGSSTGFGGGGGMGGNGGTGGL 2029 +GG G G NGG G+G GG G G SS GGG G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 2030 GNAGYGGYGGDGGKGGDGGDTGGGV 2054 G GG G+ G G G V Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.4 bits (73), Expect = 0.022 Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 1956 GGGGNGTSTGGVGGNGGKGGGATDLESVAGSGGNGGNGGIGATGGNAGRGGDGGSSTGFG 2015 GG G G +TG +G GG T G G + G G + N GG GS +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPT-----GLGVGGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 2016 GGGGMGGNGGTGGLGNAGYGGYGG 2039 GG G G GG G G G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.023 Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 6/108 (5%) Query: 1810 DGGDGGNGGNGGDGAIRGDGGAGGNGGNGVGTLNTVNPNGGDGGNGGNGGNGNTGGTGGR 1869 + G GN G G G + G+G + N NP GG G+G + G G+ G GG Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN--NPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 1870 GGNGGANGAVHGGDGGNGGKGGNGVIAGAGGDGGTGGAGGGFQATGGS 1917 GN G G GGN V G G G + G+ Sbjct: 68 NGNSGG----GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.4 bits (73), Expect = 0.024 Identities = 23/75 (30%), Positives = 29/75 (38%) Query: 1946 RATGGAGGTGGGGGNGTSTGGVGGNGGKGGGATDLESVAGSGGNGGNGGIGATGGNAGRG 2005 R + G NG TG G G G E+ GG+G G G+ G Sbjct: 7 RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 2006 GDGGSSTGFGGGGGM 2020 G+G S G G GG + Sbjct: 67 GNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.024 Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Query: 1621 GTGGKGGNGGSGGIGGNGGNGGFGGGGTIRGDGGNGGNGGNGIGAGMDGGAGGKGGEGLT 1680 G G+G N G+ GN NGG G G G G + G+G + + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLG-----VGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 1681 GGNGGNGGNGDNGVNGSNGGNGGKG 1705 GG G+G G NG +G G GG Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.024 Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 289 AGGAGGAGGQGMGLDGGAGGGGGQGGLIYGGGGDGGAGGVGGEVGGGGAGGTGGAGGAAG 348 +GG G G G GG G + GG DG GGG+G GG +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 349 LIGHGGAGGGGGAGDGGSTGGAGQT 373 HG GG G +G G TGG Sbjct: 62 ---HGNGGGNGNSGGGSGTGGNLSA 83 Score = 32.4 bits (73), Expect = 0.025 Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 1/110 (0%) Query: 835 GAGGDGGAGGAYGDGGDGGAGGAGGDGRNGVDATTAGASGTQGFAGGGGGAGGAGGAGGT 894 G G G GA+ G+ GG G G G + +G S GGG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNIN-GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 895 QAGAGGAGGDGGAGGTGGFGGSGANGGAGDHGTAANPNGGRGGDGGSGAA 944 GG G GG GTGG + A A + P G S A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.0 bits (72), Expect = 0.029 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Query: 947 AGGDGGNGGAGGQAQAAGYADGTRGAGGNGGVGGAGGLAGDGGRGGDGA---VGFGGAGG 1003 +GGDG G + + G G G GG G + + G G+ + +GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1004 DGGHGGNTGAGGAGGTGGVGSST 1026 G GGN +GG GTGG S+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.0 bits (72), Expect = 0.032 Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 656 AGGAGGNGGAGGQALAAGYTDGVRGAGGSGGAGGAGGLAGAGGDGGDAYTTGGGAGGDGG 715 +GG G G + + G G G GGA G + G +G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 716 HGGDTGTGGAGGSGGAGSSNGLSGLSGHSPTSGGDGGAGGDGGDSPATGGRGGA 769 HG GG G+ G GS G + + +P + G G A GA Sbjct: 62 HGN----GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 31.6 bits (71), Expect = 0.037 Identities = 31/113 (27%), Positives = 39/113 (34%), Gaps = 5/113 (4%) Query: 994 GAVGFGGAGGDGGHGGNTGAGGAGGTGGVGSSTGLTGLGGHSPTSGGDGGNGGNGGRGAV 1053 G G G G GN G G G G+S G ++P GG G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS-- 60 Query: 1054 DIAGGAGGTGGNGGAYGNGGDGGDGGDGVNGTRGLTAITPGGSGTDGSAGSAG 1106 G G G G+G G G A++ G+G + SAG Sbjct: 61 ---GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.6 bits (71), Expect = 0.038 Identities = 26/80 (32%), Positives = 31/80 (38%) Query: 1791 SGGNAGNGGNGVNGLFTNRDGGDGGNGGNGGDGAIRGDGGAGGNGGNGVGTLNTVNPNGG 1850 SGG+ G + N +GG G G GG G G G G+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1851 DGGNGGNGGNGNTGGTGGRG 1870 G GGNG +G GTGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 31.6 bits (71), Expect = 0.043 Identities = 20/81 (24%), Positives = 26/81 (32%) Query: 1897 GAGGDGGTGGAGGGFQATGGSGGDGGAGGSGTTGGTGGRGGAGGAADGFRATGGAGGTGG 1956 G G + G G G GG G+ + GG+ G GG+G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1957 GGGNGTSTGGVGGNGGKGGGA 1977 GG + G G A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAA 86 Score = 31.2 bits (70), Expect = 0.050 Identities = 33/100 (33%), Positives = 37/100 (37%), Gaps = 10/100 (10%) Query: 1301 GGNGGDGGTGGTGTAATTAGSPGAVGGHGGAGGNGGDGGYLNGNAGNGGSGGAGGTGGAG 1360 GG+G TG T+ G P +G GGA G N G GSG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1361 ATGTSQAAATGLGGGRGGDGGAGGAGGDGGNGGKAHATGF 1400 G GGG G GG G GG+ A GF Sbjct: 63 ----------GNGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 133 bits (337), Expect = 3e-38 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 15/151 (9%) Query: 27 VLVTGACRFLGGYLTARLAQNPLISSVIAVDAIAPSKDMLRRMGRAE--------FVRAD 78 LVTGA F+G +++ RL + V+ +D + D+ + R E F + D Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG--HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 79 IRN-PFIAKVIRNGDVDTVVHAAAASYAPRS-GGSAALKELNVMGAMQLFAACQKAPSVR 136 + + + + +G + V + S A + N+ G + + C+ ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN-KIQ 119 Query: 137 RVVLKSTSEVYGSSPHDPVVFTEDSSSRRPF 167 ++ S+S VYG + P F+ D S P Sbjct: 120 HLLYASSSSVYGLNRKMP--FSTDDSVDHPV 148
>cloacin#Cloacin signature. Length = 551 Score = 39.3 bits (91), Expect = 4e-05 Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Query: 468 GAGGAGANGGLLIGHGGAGGGGGTGGNGHGRPIGSGGAGGD---GGGGGTGGWLYGNGGH 524 G G G N G G GG G G G GSG + + GGG G+G G GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 525 GGTGATGGSGRHSGASGDGGDGGDAQAIGDGGAGGSGGAGGA 566 G G G SG SG G+ A G G G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.0 bits (85), Expect = 2e-04 Identities = 33/102 (32%), Positives = 39/102 (38%) Query: 161 GAAGLIGNGGAGGTGYSPTTGSGAVGGNGGAGGTGGWLYGSGGSGGIGGVGGSGTIGAPS 220 G G N GA T + G +G GGA GW + GG G G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 221 GHGGSGGLGGGTGLFGQGGAGGNGGQGGGENFASTAGAGGPA 262 G+GG G GG G + G ST GAGG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.6 bits (84), Expect = 3e-04 Identities = 24/85 (28%), Positives = 31/85 (36%) Query: 180 TGSGAVGGNGGAGGTGGWLYGSGGSGGIGGVGGSGTIGAPSGHGGSGGLGGGTGLFGQGG 239 +G G N GA T G + G G+GG G+ + + GG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 240 AGGNGGQGGGENFASTAGAGGPAGT 264 G GG G + T G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.5 bits (81), Expect = 5e-04 Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 362 GGQGGGGHLGGAFAGGGGDGGAGAVGGTGGWLLGDGGAGGNGGDGGDGGAASGFAGDGGR 421 GG G G + G G +GG +G GG G G + N GG G+ + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 422 GGQGAVGGASGWLLGNGGAGGDGGAGGEGGDSSGGAASAGGDGGAGGAGGAG 473 G G GNG +GG G GG + A GAGG Sbjct: 63 GNGG----------GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.7 bits (79), Expect = 0.001 Identities = 36/105 (34%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 297 GVGGSGGSGGATGLLGNGGAGGTGGQGGDGGRGFDGSLGAGGAGGTGAVGGSGGWLVGDG 356 G G G + GA GN G TG G G S G+G + GG G + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGA-----SDGSGWSSENNPWGGGSGSGIHWG 57 Query: 357 GTGGDGGQGGGGHLGGAFAGGGGDGGAGAVGGTGGWLLGDGGAGG 401 G G G GG G+ GG GG A G L GAGG Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.7 bits (79), Expect = 0.001 Identities = 29/80 (36%), Positives = 36/80 (45%) Query: 416 AGDGGRGGQGAVGGASGWLLGNGGAGGDGGAGGEGGDSSGGAASAGGDGGAGGAGGAGAN 475 +G GRG SG + G G GG +G S GG G+G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 476 GGLLIGHGGAGGGGGTGGNG 495 G G+G +GGG GTGGN Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.001 Identities = 23/71 (32%), Positives = 27/71 (38%) Query: 501 GSGGAGGDGGGGGTGGWLYGNGGHGGTGATGGSGRHSGASGDGGDGGDAQAIGDGGAGGS 560 G G G + G T G + G G G G + + GG I GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 561 GGAGGAGGSGG 571 G GG G SGG Sbjct: 63 GNGGGNGNSGG 73 Score = 34.3 bits (78), Expect = 0.001 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 6/91 (6%) Query: 440 AGGDGGAGGEGGDSSGGAASAGGDGGAGGAGGAGANGGLLIGHGGAGGGGGTGGNGHGRP 499 +GGDG G S+ G + GG G G GGA G + GGG G+G + G Sbjct: 2 SGGDGRGHNTGAHSTSGNIN-GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG-- 58 Query: 500 IGSGGAGGDGGGGGTGGWLYGNGGHGGTGAT 530 G G+GGG G G G GG+ A Sbjct: 59 ---GSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.003 Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 2/81 (2%) Query: 395 GDGGAGGNGGDGGDGGAASGFAGDGGRGGQGAVGGASGWLLGNGGAGGDGGAGGEGGDSS 454 G G G N G G +G G G G G SGW N GG G+G G S Sbjct: 3 GGDGRGHNTGAHSTSGNING--GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 455 GGAASAGGDGGAGGAGGAGAN 475 G G GG+G G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 32.8 bits (74), Expect = 0.005 Identities = 24/80 (30%), Positives = 35/80 (43%) Query: 491 TGGNGHGRPIGSGGAGGDGGGGGTGGWLYGNGGHGGTGATGGSGRHSGASGDGGDGGDAQ 550 +GG+G G G+ G+ GG TG + G G ++ + G+ GG + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 551 AIGDGGAGGSGGAGGAGGSG 570 GG G SGG G GG+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.006 Identities = 23/78 (29%), Positives = 28/78 (35%) Query: 436 GNGGAGGDGGAGGEGGDSSGGAASAGGDGGAGGAGGAGANGGLLIGHGGAGGGGGTGGNG 495 G G G + GA G+ +GG G GGA G + G G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 496 HGRPIGSGGAGGDGGGGG 513 GG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 31.6 bits (71), Expect = 0.008 Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 142 GNGGAGGTGSAANPDGGNGGAAGLIGNGGAGGTGYSPTTGSGAVGGNGGAGGTGGWLYGS 201 GN G TG +G N GG+G G G+ GNGG G G GS Sbjct: 18 GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSG--GGS 75 Query: 202 GGSGGIGGVGGSGTIGAPS-GHGGSGGLG 229 G G + V G P+ G+GGL Sbjct: 76 GTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.009 Identities = 22/75 (29%), Positives = 29/75 (38%) Query: 273 GNGGAGGIGGAGGVVGSSEGGVDGGVGGSGGSGGATGLLGNGGAGGTGGQGGDGGRGFDG 332 G G G G + G+ G G S GSG ++ GG G+G G G +G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 333 SLGAGGAGGTGAVGG 347 GG+G G Sbjct: 66 GGNGNSGGGSGTGGN 80 Score = 31.6 bits (71), Expect = 0.009 Identities = 38/122 (31%), Positives = 42/122 (34%), Gaps = 5/122 (4%) Query: 255 TAGAGGPAGTGGHGGWLYGNGGAGGIGGAGGVVGSSEGGVDGGVGGSGGSGGATGLLGNG 314 + G G TG H NGG G+G GG S + G GGSG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGS 60 Query: 315 GAGGTGGQGGDGGRGFDGSLGAGGAGGTGAVGGSGGWLVGDGGTGGDGGQGGGGHLGGAF 374 G G GG G GG GS G A G + G GG G L A Sbjct: 61 GHGNGGGNGNSGG----GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Query: 375 AG 376 A Sbjct: 117 AD 118 Score = 30.1 bits (67), Expect = 0.025 Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Query: 240 AGGNG-GQGGGENFASTAGAGGPAGTGGHGGWLYGNGGAGGIGGAGGVVGSSEGGVDGGV 298 +GG+G G G + S GGP G G GG G+G + GG GS G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 299 GGSGGSGGATGLLGNGGAGGTGGQGGDGGRGFDGSLGAGGAGGTG 343 G+GG G +G G+G G GF +L GAGG Sbjct: 62 HGNGGGNGNSG-GGSGTGGNLSAVAAPVAFGFP-ALSTPGAGGLA 104 Score = 29.7 bits (66), Expect = 0.037 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 217 GAPSGHGGSGGLGGGTGLFGQGGAGGNGGQGGGENFASTAGA-GGPAGTGGHGGWLYGNG 275 G GH G G G G GG G ++S GG +G+G H G G+G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 276 GAGGIGGAGGVVGSSEGG 293 GG G +GG G+ Sbjct: 64 NGGGNGNSGGGSGTGGNL 81 Score = 29.7 bits (66), Expect = 0.042 Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 201 SGGSGGIGGVGGSGTIGAPSGHGGSGGLGGGTGLFGQGGAGGNGGQGGGENFASTAGAGG 260 SGG G G T G +G G+GGG G G + N GGG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 261 PAGTGGHGGWLYGNGGAGGIGGA 283 G GG G G G GG A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSA 83
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 51.8 bits (124), Expect = 1e-08 Identities = 48/292 (16%), Positives = 100/292 (34%), Gaps = 32/292 (10%) Query: 140 VVVYIVGKNETEAYASVHAVRHIVD--NTPAPPGLKAYVTGPSALNADQAEAGDKSIAKV 197 + I A + A++ + P G+K D SI +V Sbjct: 287 AGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP------YDTTPFVQLSIHEV 340 Query: 198 --TAITSVVIAVMLLFI-YRSVVTAFLVLIMVGIDLGAIRGTIAFLANHNIFNLSTFATN 254 T ++++ +++++ +++ + I V + + GT A LA ++++T Sbjct: 341 VKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPV---VLLGTFAILAAFG-YSINTLTMF 396 Query: 255 LLVLLAIAASTDYAIFMLGRYHEARYAGEDRETAFYTMFHGTAHV---ILGSGLTIAGA- 310 +VL AI D AI ++ R ED+ + + ++G + ++ Sbjct: 397 GMVL-AIGLLVDDAIVVVENVE--RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 311 --MYCLSFARLPYFQTLAAPCAIGMLVAVFAALTLGPAVLAV----GSAFKLFDPKRRVN 364 M + ++ + M ++V AL L PA+ A SA + Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFG 513 Query: 365 --TRRWRRVGTAIVRWPGPVLAATC--LVASIGLLALPSYKTTYDLRKFMPS 412 + G +L +T L+ ++A F+P Sbjct: 514 WFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPE 565 Score = 46.0 bits (109), Expect = 8e-07 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 7/154 (4%) Query: 772 AISLIVIIMMLITRSVVAAAVIVGTVLLSMGSSFGLSVLVWEDILGIELYWMVLAMSVIL 831 AI L+ ++M L +++ A + V + + +F + I + ++ MVLA+ +++ Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 832 LLAVGSDYNLLLISRLKEEIGAGLNTGIIRAMAGTGGVVTAAGMVF-AVTMSLFVFSDL- 889 A+ N + R+ E ++M+ G + MV AV + + F Sbjct: 407 DDAIVVVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGST 463 Query: 890 -RIIGQIGTTIGLGLLFDTLIVRSFMTPSIAALL 922 I Q TI + L+ TP++ A L Sbjct: 464 GAIYRQFSITIVSAMALSVLVALIL-TPALCATL 496
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 7e-16 Identities = 22/185 (11%), Positives = 63/185 (34%), Gaps = 12/185 (6%) Query: 5 AERGAQTRAALMAAAVAVIAERGWGAATTRMVAERAGLPPGLVHYHFASLNDLLIDAALQ 64 + +TR ++ A+ + +++G + + +A+ AG+ G +++HF +DL + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF-SEIWE 64 Query: 65 AAREEAAQVLDGLAGDSPSQGIDRLIDAVSSYDVDDRNQNPAILVFGEMLLAATRYERLR 124 + ++ P + L + + ++ + E++ + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHV-LESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 125 MGLAEILGDYRSALRQWLADQGGA----------IDPEATAALMFAAIDGLVLHRVIDPR 174 + + + + + A +M I GL+ + + P+ Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 175 LRTLA 179 L Sbjct: 184 SFDLK 188
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (278), Expect = 2e-31 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 17/251 (6%) Query: 3 ALDGRVALITGGARGQGRAHALALAGQGADIALADAPGPMAELTYPLGSEEDLLATAELV 62 ++G++A ITG A+G G A A LA QGA IA D + E L + Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDY------------NPEKLEKVVSSL 52 Query: 63 GQLGRRCLPMVVDVRDAAQVNTAVERTVRELGSLDIVLANAGIVSTGRLEEVSDQVWQQL 122 R DVRD+A ++ R RE+G +DI++ AG++ G + +SD+ W+ Sbjct: 53 KAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT 112 Query: 123 MDTNLTGVFHTLRAAIPVMRQQRFGRIVATSSMGGRMGIPELAAYNATKWGIIGLIKSVA 182 N TGVF+ R+ M +R G IV S + +AAY ++K + K + Sbjct: 113 FSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLG 172 Query: 183 LEVAKEGITANVICPTTTQTPMVQPAGIGDDQEVPDDLVRRMMKANPIPQPW---LQPED 239 LE+A+ I N++ P +T+T M ++ + +++ ++ P +P D Sbjct: 173 LELAEYNIRCNIVSPGSTETDMQWSLWADENGA--EQVIKGSLETFKTGIPLKKLAKPSD 230 Query: 240 VSRGVVYLVTD 250 ++ V++LV+ Sbjct: 231 IADAVLFLVSG 241
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.039 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 11/71 (15%) Query: 54 PIVVALADVALFTVLFTDGQRANVRELRETWTLSGRALGVGMPLTMIGIAVPAHFLTGLN 113 P +VA++ V +F L L E+W++ + + +PL ++G + A L Sbjct: 873 PALVAISFVVVFLCLAA---------LYESWSIPVSVM-LVVPLGIVG-VLLAATLFNQK 921 Query: 114 WPTAFLVGAIL 124 F+VG + Sbjct: 922 NDVYFMVGLLT 932
>cloacin#Cloacin signature. Length = 551 Score = 38.2 bits (88), Expect = 1e-04 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 13/84 (15%) Query: 564 NSGNTNTGLWNAGNVNTGFGGIGTYSGNSGFFNSGTGNSGFFNSSDDNSGFGNSSSGGHN 623 N+G +T GN+N G G+G G + G SS++N G S SG H Sbjct: 10 NTGAHSTS----GNINGGPTGLGV---------GGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 624 SGAANSGSGGYNAGFGNSNTGGGS 647 G + G+GG N G + GG+ Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGN 80
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 22/183 (12%) Query: 19 AVRRDDRILDIVVHLLQTEGYDAVQLREVARRARTSLATIYKRYANRDELILAALEFWMD 78 A ILD+ + L +G + L E+A+ A + IY + ++ +L E + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE--LS 66 Query: 79 EHHYAGLAEQTPAPGESLYAGMMRVLRTIFQPWETHPDIVKAYFRARAAPGGQRLVHRGL 138 E + L + A P +I+ + +RL Sbjct: 67 ESNIGELELEYQAKFPG-------------DPLSVLREILIHVLESTVTEERRRL----- 108 Query: 139 DMVVPAAMEVLAGVDENFIHDLDTVISSLVYGLLGRFTAGEIAITEILPSID-RTVFWLI 197 ++ + + + + Y + + I + + R ++ Sbjct: 109 -LMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM 167 Query: 198 RGY 200 RGY Sbjct: 168 RGY 170
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 40.3 bits (94), Expect = 5e-05 Identities = 49/229 (21%), Positives = 74/229 (32%), Gaps = 13/229 (5%) Query: 237 NFGSGNLGSSNFGWAN---LGSNNIGVANAGGGNQGFGNIGNVNTGFGNTGIGNFGLANT 293 N GS G F LG + G NAG G+ + + + + + +G T Sbjct: 175 NPGSEEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENET 234 Query: 294 GNNNIGIALTGDNQIGIGGLNSGVGNFGLFNSGTGNVGFF-NSGNGNFGIGNTGDFNTGV 352 G + G I + G +G GF N+ + ++ Sbjct: 235 GADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFS 294 Query: 353 WNSGSGNSGFFNPGMFNTGVLDVGNANTGYLNTGSYNMGSFNPGASNTGAFNIGDGNTGW 412 G F G N +++ + + N+ S G + A G GN Sbjct: 295 VWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNV-SIAHGVTIENAIG-GSGNDIL 352 Query: 413 F-NNGD--LNTGALN---FGDMNNGLLNTGDLNNGFFYRGVGQGSLHFA 455 N+ D L GA N +G L G + F Y G GQ S A Sbjct: 353 VGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVY-GSGQDSTVAA 400 Score = 31.1 bits (70), Expect = 0.028 Identities = 26/156 (16%), Positives = 42/156 (26%), Gaps = 21/156 (13%) Query: 202 QLIGVNLGLANVGSGNVGNANNGLGNIGN----------GNLGNGNFGSGNLGSSNFGWA 251 IG LGLA+ G N G + + G +G + ++G A Sbjct: 188 HEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENE--TGADYNGHYGGA 245 Query: 252 NLGSNNIGVANAGGGNQGFGNIGNVNTGFGNTGIGNFGLANTGNNNIGIALTGD------ 305 + + + G N +V NT + ++ I Sbjct: 246 PMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFD 305 Query: 306 --NQIGIGGLNSGVGNFGLFNSGTGNVGFFNSGNGN 339 +N G+F GNV G Sbjct: 306 FSGYSNNQRINLNEGSFSDVGGLKGNV-SIAHGVTI 340
>cloacin#Cloacin signature. Length = 551 Score = 43.5 bits (102), Expect = 6e-06 Identities = 36/84 (42%), Positives = 42/84 (50%) Query: 839 GQGGAGGDGGAGSTTGNQGGGGAGGNGGGGGAGGNGGSGANGADGSISGLGGQAGGNGGD 898 G G G + GA ST+GN GG G GGG + G+G S N G SG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 899 GGDAGVGGSGGDGGAGLSVGAHGA 922 G G G SGG G G ++ A A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 42.8 bits (100), Expect = 1e-05 Identities = 38/102 (37%), Positives = 43/102 (42%) Query: 1016 GNGGAGGTGKASSATGGIGGGGGNGGAAGQVGDGGGGGTGGNGGNGGAGRDGAMGGTGGI 1075 G G G A S +G I GG G G DG G + N GG+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1076 GGDAGMVGNGGGGGTGGNGGNGGNGNAGGGPGIGGNGAEGGA 1117 G G +GGG GTGGN A G P + GA G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 38.5 bits (89), Expect = 2e-04 Identities = 29/79 (36%), Positives = 35/79 (44%) Query: 974 GNGGAGGSSPQGSGGGGGNGGAGGTGGDAGLQEGGGGTGGNGGNGGAGGTGKASSATGGI 1033 G G G ++ S G NGG G G G +G G + N GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1034 GGGGGNGGAAGQVGDGGGG 1052 G GGGNG + G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 37.0 bits (85), Expect = 6e-04 Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 385 VSGGDGSSGGNGGNPGVGGAGGAGGTGAGGARAADGATGNSPTSGGNGGNGGAGADAIGS 444 +SGGDG G N G G G TG G A +G S + GG G+G G Sbjct: 1 MSGGDGR-GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 445 GQSGGAGGAGGNGGRVGNGGNGGA 468 G GG G +GG G GGN A Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 36.6 bits (84), Expect = 7e-04 Identities = 35/115 (30%), Positives = 43/115 (37%) Query: 449 GAGGAGGNGGRVGNGGNGGAGGNGFLGAPAFSSNPGGNGGNGGAGGAGGNGGIQAGNGGD 508 G G G N G GN G G S G + N GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 509 GGAGGHGGAGATGGSGTNGFDGAFSGADGSPGGNGGKGGTGGAGGNGGAAGLALA 563 G GG+G +G G+G N A A G P + G + GA A+A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 36.6 bits (84), Expect = 8e-04 Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 813 TGADGATVGTGVDGQDGGNGGAGGTGGQGGAGGDGGAGSTTGNQGGGGAGGN--GGGGGA 870 +G DG TG G G G GG DG S+ N GGG+G GGG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 871 GGNGGSGANGADGSISGLGGQA 892 GNGG N GS +G A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 35.5 bits (81), Expect = 0.001 Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 361 GGGGTGGSGGAGGAAGDGGDGATGVSGGDGSSGGNG----GNPGVGGAGGAGGTGAGGAR 416 GG G G + GA +G+ G TG+ G G+S G+G NP GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 417 AADGATGNSPTSGGNGGNGGAGADAIGSG 445 G GNS G GGN A A + G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 35.5 bits (81), Expect = 0.002 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 1057 NGGNGGAGRDGAMGGTGGIGGDAGMVGNGGGGGTGGNGGNGGNGNAGG---GPGIGGNGA 1113 +GG+G GA +G I G +G GGG G + N GG G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1114 EGGAGGSGGSSSGNGGAGG 1132 G GG+G S G+G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 35.5 bits (81), Expect = 0.002 Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 663 GNGGRGGNGGLVGNGGDGGTGGAGGTGLGGLTNSFPGSSGTGGDPGGTGGNGGAGGSGGF 722 G GRG N G G+ GG G G+GG + G S GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGN-INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 723 FAGDGGNGGAGGVGGTGGDGGNGAT 747 GGNG +GG GTGG+ A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 34.7 bits (79), Expect = 0.003 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 800 GAGGNAGNGGSGATGADGATVGTGVDGQDGGNGGAGGTGGQGGAGGDGGAGSTTGNQGGG 859 G G N G+ +T + TG+ G + G+G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 860 GAGGNGGGGGAGGNGGSGANGADGSISGLGGQAGGNGGDGGDA 902 G GG G G GG+G G A + G A G GG A Sbjct: 63 GNGGGNGNSG-GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.3 bits (78), Expect = 0.004 Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 1/100 (1%) Query: 316 TGADAANPTTTGQAGGDGGNGGAGGAGGDGGGGGKSGWLGLAGALGGGGTGGSGGAGGAA 375 +G D T + NGG G G GG SGW GGG+G GG + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW-SSENNPWGGGSGSGIHWGGGS 60 Query: 376 GDGGDGATGVSGGDGSSGGNGGNPGVGGAGGAGGTGAGGA 415 G G G G SGG +GGN A G GA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGA 100 Score = 34.3 bits (78), Expect = 0.004 Identities = 27/87 (31%), Positives = 32/87 (36%) Query: 738 TGGDGGNGATGGTGATAGANGQDGGNGGTGGTGGQGGAGGAGGATFTGKAGTQGAGGAGG 797 +GGDG TG + NG G G GG G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 798 DGGAGGNAGNGGSGATGADGATVGTGV 824 G GGN +GG TG + + V V Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 34.3 bits (78), Expect = 0.004 Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 7/87 (8%) Query: 1159 NGGDGRGGAGGTGGTGGTGGDGGVGGNGGAGGKAISPTGQDGAQGAGGNGGAGGTGGNGG 1218 +GGDGRG G T G G G G G S + GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1219 FGGSGGSGADGTLFSSLAGTGGTGGNG 1245 G GG+G G G GTGGN Sbjct: 62 HGNGGGNGNSG-------GGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.006 Identities = 34/94 (36%), Positives = 40/94 (42%), Gaps = 6/94 (6%) Query: 1278 AGTGGFGGNGGLGSAFGP--GGTGGNGGSGGSSSTSAGGGGGTGGAGGTGFDGSAGGAGG 1335 +G G G N G S G GG G G GG+S S GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1336 NGGQGGDGLGTAGDGGNGGTGGKGSNAPIGFSFG 1369 +G GG+G GG GTGG S +FG Sbjct: 62 HGNGGGNG----NSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.5 bits (76), Expect = 0.006 Identities = 32/79 (40%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 1086 GGGGTGGNGG-NGGNGNAGGGPGIGGNGAEGGAGGSGGSSSGNGGAGGKGGSGGTGGAGQ 1144 GG G G N G + +GN GGP G G + GSG SS N GG G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPT-GLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1145 FGNTGGNGANGTFDNGGDG 1163 GN GGNG +G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 33.5 bits (76), Expect = 0.006 Identities = 26/84 (30%), Positives = 30/84 (35%) Query: 550 GAGGNGGAAGLALAATGHDGGHGTGGAGGNGGAGGSAGNGGNGAKGVSGVNNGAGGNGGD 609 G G G G + +GG G GG G + N G SG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 610 GGTPGIGGTGGAGGDSGGGSHGAT 633 G G G +GG G G S A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.008 Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 9/112 (8%) Query: 685 AGGTGLGGLTNSFPGSSGTGGDPGGTGGNGGAGGSGGFFAGDGGNGGAGGVGGTGGDGGN 744 +GG G G T + S G P G G GGA G+ + + GG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 745 GATGGTGATAGANGQDGGNGGTGGTGGQGGAGGAGGATFTGKAGTQGAGGAG 796 GG G +GG GTGG A A A T GAGG Sbjct: 62 HGNGGGN---------GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.1 bits (75), Expect = 0.008 Identities = 34/105 (32%), Positives = 39/105 (37%), Gaps = 6/105 (5%) Query: 601 NGAGGNGGDGGTPG-IGGTGGAGGDSGGGSHGATGSDGATPHSGGNGGKGGDGADATGFG 659 +G G N G T G I G G GG S G+ S P GG+G G G Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG-----G 59 Query: 660 QTGGNGGRGGNGGLVGNGGDGGTGGAGGTGLGGLTNSFPGSSGTG 704 GNGG GN G G + A G S PG+ G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.1 bits (75), Expect = 0.009 Identities = 31/123 (25%), Positives = 40/123 (32%) Query: 1115 GGAGGSGGSSSGNGGAGGKGGSGGTGGAGQFGNTGGNGANGTFDNGGDGRGGAGGTGGTG 1174 GG G + + + GG G G G + G + GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1175 GTGGDGGVGGNGGAGGKAISPTGQDGAQGAGGNGGAGGTGGNGGFGGSGGSGADGTLFSS 1234 G GG G G G G +S A G G G S A + ++ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 1235 LAG 1237 L G Sbjct: 123 LKG 125 Score = 33.1 bits (75), Expect = 0.010 Identities = 27/73 (36%), Positives = 31/73 (42%) Query: 1071 GTGGIGGDAGMVGNGGGGGTGGNGGNGGNGNAGGGPGIGGNGAEGGAGGSGGSSSGNGGA 1130 G G G GN GG TG G G + +G G G+G G SG+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1131 GGKGGSGGTGGAG 1143 GG G SGG G G Sbjct: 66 GGNGNSGGGSGTG 78 Score = 32.8 bits (74), Expect = 0.010 Identities = 24/81 (29%), Positives = 32/81 (39%) Query: 969 SGGHGGNGGAGGSSPQGSGGGGGNGGAGGTGGDAGLQEGGGGTGGNGGNGGAGGTGKASS 1028 +G H +G G GGG + G+G + + G G GG G G G + Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 1029 ATGGIGGGGGNGGAAGQVGDG 1049 + GG G GG A V G Sbjct: 71 SGGGSGTGGNLSAVAAPVAFG 91 Score = 32.0 bits (72), Expect = 0.018 Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 642 SGGNGGKGGDGADATGFGQTGGNGGRGGNGGLVGNGGDGGTGGAGGTGLGGLTNSFPGSS 701 SGG+G GA +T GG G G GG DG + GG + S Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG----ASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 702 GTGGDPGGTGGNGGAGGSGG 721 G G G G GGSG Sbjct: 58 GGSGHGNGGGNGNSGGGSGT 77 Score = 32.0 bits (72), Expect = 0.020 Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 857 GGGGAGGNGGGGGAGGNGGSGANGADGSISGLGGQAGGNGGDGGDAGVGGSGGDGGAGLS 916 GG G G N G GN +G +GLG G + G G + GG G+G+ Sbjct: 3 GGDGRGHNTGAHSTSGN-------INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 917 VGAHGATGNVVANGGNGGQGGNGGN 941 G GN NG +GG G GGN Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 31.6 bits (71), Expect = 0.024 Identities = 35/107 (32%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 929 NGGNGGQGGNGGNALIGTSDGGAGGAGGAGGKAWLMGDGGSGGHGGNGGAGGSSPQGSGG 988 +GG+G G ++ G +GG G G GG + G G S + GG GS GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGAS--DGSGWSSENNPWGGGSGSGI-HWGG 58 Query: 989 GGGNGGAGGTGGDAGLQEGGGGTGGNGGNGGAGGTGKASSATGGIGG 1035 G G+G GG G G G G G G + +T G GG Sbjct: 59 GSGHGNGGGNGNSGG---GSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.027 Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 308 GGVGGAGATGADAANPTTTGQAGGDGGNGGAGGAGG--------DGGGGGKSGWLGLAGA 359 GG G TGA + + G G G GGA G GG G W G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 360 LGGGGTGGSGGAGGAAGDGGDGATGVSGG 388 GGG G SGG G G+ A V+ G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 30.8 bits (69), Expect = 0.044 Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 4/114 (3%) Query: 588 NGGNGAKGVSGVNNGAGGNGGDGGTPGIGGTGGAGGDSGGGSHGATGSDGATPHSGGNGG 647 +GG+G +G ++ +G G G+GG G ++ G G+ H GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 648 KGGDGADATGFGQTGGNGGRGGNGGLVGNGGDGGTGGAGGTGLGGLTNSFPGSS 701 G G G G +GG G GGN V G G GGL S + Sbjct: 62 HGNGG----GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 30.8 bits (69), Expect = 0.048 Identities = 28/104 (26%), Positives = 36/104 (34%) Query: 269 VSGTDGGAGGIGGDGGAGGAGGLLIGNGGAGGAGGLGGLGGVGGAGATGADAANPTTTGQ 328 +SG DG G +G G G G GGA G G+ + G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 329 AGGDGGNGGAGGAGGDGGGGGKSGWLGLAGALGGGGTGGSGGAG 372 G+GG G G G GG + +A T G+GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 30.2 bits (68), Expect = 0.007 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 10/46 (21%) Query: 112 KIVLGGYSQGADVIDIVAGVPLAGISFGNELPAQYADNIAAVAVFG 157 K++L GYS GA+VI V NE+PA+Y N+ + Sbjct: 118 KVILIGYSFGAEVIPFVL----------NEMPARYRKNVLGAVLLS 153
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 168 bits (428), Expect = 8e-51 Identities = 87/321 (27%), Positives = 137/321 (42%), Gaps = 54/321 (16%) Query: 72 LAGLDLPEAWRLTRGSGQRVAVIDTGV-AHHRRLA-HLVAGGDYVFTGDG----TQDCDA 125 + + P W TRG G +VAV+DTG A H L ++ G ++ +G +D + Sbjct: 26 VEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNG 85 Query: 126 HGTIVAGIIAAAPDSATDQFSGVAPDATVIGIRQSSAKFSPVGNRSSTGVGDVDTMARAV 185 HGT VAG IAA + GVAP+A ++ I+ + + G G D + + + Sbjct: 86 HGTHVAGTIAATENENG--VVGVAPEADLLIIKVLNKQ----------GSGQYDWIIQGI 133 Query: 186 RTAADLGASVINISTIACVAAESPPDDRALGAALAYAVDVKNAVIVAAAGNTGGAAQCPS 245 A + +I++S P D L A+ AV +++ AAGN G Sbjct: 134 YYAIEQKVDIISMS------LGGPEDVPELHEAVKKAVA-SQILVMCAAGNEGDGD---- 182 Query: 246 QRPETSRDTATVVVSPAWYDDYVLTVGSVNANGEPSAFTLPSPWVDVAAGGENVTSLNPV 305 D + P Y+ V++VG++N + S F+ + VD+ A GE++ S P Sbjct: 183 -------DRTDELGYPGCYN-EVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVP- 233 Query: 306 GDGTVNGLDDHGGFRPLSGTSYAAPVVSGLAALIRARFPALTAR-----QVMARIISTAH 360 G + SGTS A P V+G ALI+ A R ++ A++I Sbjct: 234 ----------GGKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRT- 282 Query: 361 HPPHGWDPFVGNGTVDVLAAV 381 P GNG + + A Sbjct: 283 IPLGNSPKMEGNGLLYLTAVE 303
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 398 bits (1024), Expect = e-140 Identities = 113/373 (30%), Positives = 178/373 (47%), Gaps = 28/373 (7%) Query: 14 AEAVVDLGAIAHNVRLLRERAGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVASVD 73 +A +DL A+ N+ ++R+ A A+V +VVKA+ YGHG + A + +++ Sbjct: 5 IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNLE 62 Query: 74 EALTLRADGITAPVL---AWLHAPGMDFGPALAADVQIAISSIRQLDEVLDAARRTGTTA 130 EA+TLR G P+L + HA ++ + + S QL + +A R Sbjct: 63 EAITLRERGWKGPILMLEGFFHAQDLEIYDQ--HRLTTCVHSNWQLKALQNA--RLKAPL 118 Query: 131 TVTVKIDTGLNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEKPINDIQS 190 + +K+++G+NR G P ++T +Q A + LM+H A+ P+ + Sbjct: 119 DIYLKVNSGMNRLGFQP---DRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMA- 174 Query: 191 QRFKQMFDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPVPRLGDM--- 247 R +Q +G+ LSNS+AT+ P+ D VRPGI +YG SP + D+ Sbjct: 175 -RIEQAA-----EGLECRR-SLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANT 227 Query: 248 GLVPAMTVKCAVALVKSVSAGEGVSYGHTWIAPHDTNVALLPIGYADGVFRSLGGRLEVL 307 GL P MT+ + V+++ AGE V YG + A + + ++ GYADG R VL Sbjct: 228 GLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVL 287 Query: 308 INGKRRPGVGRVCMDQFLVDLGPGPLDVAEGDEAILFGPGTRGEPTAQDWADLVGTIHYE 367 ++G R VG V MD VDL P P G L+G E D A GT+ YE Sbjct: 288 VDGVRTMTVGTVSMDMLAVDLTPCP-QAGIGTPVELWGK----EIKIDDVAAAAGTVGYE 342 Query: 368 VVTSPRGRITRVY 380 ++ + R+ V Sbjct: 343 LMCALALRVPVVT 355
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 28.1 bits (62), Expect = 0.046 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 14/102 (13%) Query: 20 LTAVATIVGASARRSLAERGS-VCDDPYAGEDFERLDSDRARVVTTPDGVPLAVREAGPV 78 +T A +G + R+LA +G+ + Y E E++ S + P VR++ + Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 79 D----------APLTMVFAHGFCLRMGAFHFQRMRLGEQWGS 110 D P+ ++ LR G H E+W + Sbjct: 73 DEITARIEREMGPIDILVNVAGVLRPGLIHSLSD---EEWEA 111
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.9 bits (111), Expect = 3e-09 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 8/93 (8%) Query: 53 GARCADNLVGYAGV-SRLGRVAPFEYEIHTIGVDPAYQGRGIGRRLLDELLAFA---DGG 108 +N +G + S A I I V Y+ +G+G LL + + +A Sbjct: 69 LYYLENNCIGRIKIRSNWNGYA----LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFC 124 Query: 109 VVFLEVRTDNEPAIALYRSVGFEQVGLRRRYYR 141 + LE + N A Y F + Y Sbjct: 125 GLMLETQDINISACHFYAKHHFIIGAVDTMLYS 157
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 8e-04 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 187 NANLGSGNTGIGNIGVGNSGEGNSALVPPQSGNYNIGGGNNGNNNLGAGNIGNFNFGFGN 246 + N+ G TG+G G + G G S+ P G G G + G GN G G Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS--GHGNGGGNGNSGGG 74 Query: 247 NGTGNFGFGNAGPADLSNPNLFTFHVTPGENNIGIGNTGN 286 +GTG A P P L TPG + + + Sbjct: 75 SGTGGNLSAVAAPVAFGFPAL----STPGAGGLAVSISAG 110 Score = 29.3 bits (65), Expect = 0.050 Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 27/131 (20%) Query: 223 GGGNNGNNNLGAGNIGNFNFGFGNNGTGNFGFGNAGPADLSNPNLFTFHVTPGENNIGIG 282 G G+N + +GNI G G G + G G + ENN G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSS-----------------ENNPWGG 48 Query: 283 NTGNGNFGLGNTGDGNIGGGNTGIGNIGFGLNGNNLVGVGGAYYDTAAGQFHFDGLNT-G 341 +G+G G +G GN GG G G G N + + A F F L+T G Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV---------AAPVAFGFPALSTPG 99 Query: 342 SGNIGIGNSGS 352 +G + + S Sbjct: 100 AGGLAVSISAG 110
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.022 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 5/94 (5%) Query: 386 GNSGIGNFGVGNAGAGNFGAGNSGLLNTGVGNAGSIDTGAFNGNNLNTGFLNSGKTNTGF 445 G G G+ ++ +GN G +GL GVG S +G + NN G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGL---GVGGGASDGSGWSSENNPWGGGSGSGIHW--G 57 Query: 446 GNSGHENTGFWNSGDVNTGVGATTDSGLATSGFG 479 G SGH N G + +G G + A FG Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 35.1 bits (81), Expect = 8e-04 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 6 DAIYTNGDIVTVDDEQPIAEA-VAVKDGRIVAVGAHD-----DVVREHLGPHTRRVDLAG 59 D + TN I+ D I +A + +KDGRI A+G V +GP T + G Sbjct: 69 DTVITNALIL---DHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEG 125 Query: 60 NTLLPGFIDPHSHYIN 75 + G +D H H+I Sbjct: 126 KIVTAGGMDSHIHFIC 141 Score = 31.2 bits (71), Expect = 0.012 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 487 ITINAAYQYSEEQSKGSITVGKLADLVIVD 516 TIN A + GS+ VGK ADLV+ + Sbjct: 409 YTINPAIAHGLSHEIGSLEVGKRADLVLWN 438
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.013 Identities = 17/97 (17%), Positives = 23/97 (23%), Gaps = 2/97 (2%) Query: 212 VLAPQVPPGNSLTPLVPETVSPVPPNESG--APESAPAPSASPTTTGAKPSASLPPAGAT 269 A Q PP + P P PP E+ + P P P Sbjct: 63 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVE 122 Query: 270 ATSPAPTSVPTPPVSAVVPGETPADTSVVAPGSPAAA 306 + +P P V + S A Sbjct: 123 SRPASPFENTAPARPTSSTATAATSKPVTSVASGPRA 159
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 2e-04 Identities = 34/96 (35%), Positives = 40/96 (41%), Gaps = 8/96 (8%) Query: 160 GNGGNAGLFGSGGA--GGSGGAGAAGGAGGSGGWLYGSGGNGGSGGNAVIAGGNGGAGGA 217 G G N G + G GG G G GGA GW + GG G+ + GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 218 GGAAGLWGAGGNGGQGGSGLAGSNGVNPAAVTDPAL 253 G G G +GG G+G S P A PAL Sbjct: 66 G------GNGNSGGGSGTGGNLSAVAAPVAFGFPAL 95 Score = 37.0 bits (85), Expect = 2e-04 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 445 AGGDGGWLVGNGGTGGTGGIGGQGGIGGQGGVGGNGAVGGNAHSPILDAHGGDGGAGGDA 504 +GGDG + GG G+G GG +G+ + ++P G GG + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 505 GHGGTGGDGGDGGLSGAGGRGGLLA 529 GHG GG+G GG SG GG +A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 36.2 bits (83), Expect = 3e-04 Identities = 27/77 (35%), Positives = 33/77 (42%) Query: 374 GDGGNGGAGGDGATGGSGATGGNGGAGGITTADQNGYSAVGTQAVGGDGGNGGNGGSGGS 433 G G G G +T G+ G G G +D +G+S+ GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 434 GGTGGAAGSGGAGGDGG 450 G GG SGG G GG Sbjct: 63 GNGGGNGNSGGGSGTGG 79 Score = 35.8 bits (82), Expect = 5e-04 Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 12/113 (10%) Query: 308 SGGSGATGGDGGANGGTGGAGGQAASYGYSSGGNGGTGGAGGTGADGGAGGDGGHGGAGG 367 SGG G G + GA+ +G G G G + G+G + GG G G H G Sbjct: 2 SGGDG-RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG--- 57 Query: 368 RGGWLLGDGGNGGAGGDGATGGSGATGGNGGAGGITTADQNGYSAVGTQAVGG 420 G G+G GG+G +GG TGGN A + G+ A+ T GG Sbjct: 58 ------GGSGHGNGGGNGNSGGGSGTGGNLSA--VAAPVAFGFPALSTPGAGG 102 Score = 35.5 bits (81), Expect = 7e-04 Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 143 GNGGAGFNNGATAGAAGGNGGNAGLFGSGGAGGSGGAGA-----AGGAGGSGGWLYGSGG 197 G G G N GA + + NGG GL GGA G + GG+G W GSG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 198 NGGSGGNAVIAGGNGGAGGAGGAAGL---WGAGGNGGQGGSGLAGSNGVNPAAVTD 250 G G G G + AA + + A G GG ++ S G AA+ D Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 33.9 bits (77), Expect = 0.002 Identities = 24/67 (35%), Positives = 30/67 (44%) Query: 422 GGNGGNGGSGGSGGTGGAAGSGGAGGDGGWLVGNGGTGGTGGIGGQGGIGGQGGVGGNGA 481 GN G +G G G + GSG + + W G+G GG G G GG G GG Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76 Query: 482 VGGNAHS 488 GGN + Sbjct: 77 TGGNLSA 83 Score = 33.1 bits (75), Expect = 0.003 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 13/92 (14%) Query: 356 AGGDG-GHGGAGGRGGWLLGDGGNGGAGGDGATGGSGATGGNGGAGGITTADQNGYSAVG 414 +GGDG GH + G G G GA+ GSG + N GG + + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI------- 54 Query: 415 TQAVGGDGGNGGNGGSGGSGGTGGAAGSGGAG 446 GG G+G GG+G +GG +G+GG Sbjct: 55 -----HWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.006 Identities = 31/91 (34%), Positives = 33/91 (36%) Query: 410 YSAVGTQAVGGDGGNGGNGGSGGSGGTGGAAGSGGAGGDGGWLVGNGGTGGTGGIGGQGG 469 +S G G G G G S GSG + GG G G G G G GG G GG Sbjct: 14 HSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGG 73 Query: 470 IGGQGGVGGNGAVGGNAHSPILDAHGGDGGA 500 G GG A P L G G A Sbjct: 74 GSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.008 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 280 GTGVNGGNGGAGGDANDDVANSSGGLAGSGGSGATGGDGGANGGTGGAGGQAASYGYSSG 339 G G N G G+ N +G G G S +G N GG+G G S Sbjct: 6 GRGHNTGAHSTSGNIN---GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 340 GNGGTGGAGGTGADGGAGG 358 GNGG G G G+ G Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 29.7 bits (66), Expect = 0.035 Identities = 31/111 (27%), Positives = 35/111 (31%), Gaps = 21/111 (18%) Query: 333 SYGYSSGGNGGTGGAGGTGADGGAGGDGGHGGAGGRGGWLLGDGGNGGAGGDGATGGSGA 392 S G G N G G +GG G G GGA GW + GG G G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGN-INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 393 TGGNGGAGGITTADQNGYSAVGTQAVGGDGGNGGNGGSGGSGGTGGAAGSG 443 GNGG G GG+G G G Sbjct: 61 GHGNGGGNG--------------------NSGGGSGTGGNLSAVAAPVAFG 91
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 1e-04 Identities = 39/102 (38%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 143 GNGGAGFNNGATAGAAGGNGGNAGLIGNGGAGGNGGAGA-----AGGTGGNGGWLYGSG- 196 G G G N GA + + NGG GL GGA G + GG+G W GSG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 197 GAGGAGGNALVAGGTGGNGGAGGAAGLWGNGGAGGHGGSGLA 238 G GG GN+ GTGGN A A +G G GLA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.2 bits (83), Expect = 4e-04 Identities = 29/89 (32%), Positives = 36/89 (40%) Query: 423 TGGDGGAGGTGGHGGAGGAGGAGGVGGDGGWLIGDGGAGGQGGIGGMGGTGGAGGSGVAG 482 T G+ G TG G G + G+G + W G G GG G G GG G SG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 483 AHGGNATSSIAAFGGDGGAGGDAGHGGMG 511 GGN ++ A A G GG+ Sbjct: 76 GTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.2 bits (83), Expect = 4e-04 Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 125 GAAGTATNPNGGAGGLLYGNGGAGFNNGATAGA--AGGNGGNAGLIGNGGAGGNGGAGAA 182 GA T+ N NGG GL G G + + ++ GG+G G G G GG G + Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 183 GGTGGNGGWLYGSGGAGGAGGNALVAGGTGG 213 GG G GG L G AL G GG Sbjct: 72 GGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 35.1 bits (80), Expect = 9e-04 Identities = 25/76 (32%), Positives = 28/76 (36%) Query: 376 GNGGAGGAGGAGGAGGNGAIGGDGGAAGFTGSNNDSAASTLYGAHGGTGGDGGAGGTGGH 435 G G GA G G G G GS S + G G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 436 GGAGGAGGAGGVGGDG 451 GG G +GG G GG+ Sbjct: 66 GGNGNSGGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 0.001 Identities = 28/77 (36%), Positives = 32/77 (41%) Query: 376 GNGGAGGAGGAGGAGGNGAIGGDGGAAGFTGSNNDSAASTLYGAHGGTGGDGGAGGTGGH 435 G G G GA GN G G G S+ +S GG+G GG GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 436 GGAGGAGGAGGVGGDGG 452 G GG G +GG G GG Sbjct: 63 GNGGGNGNSGGGSGTGG 79 Score = 34.7 bits (79), Expect = 0.001 Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Query: 341 GGNGGNGGTGGTGTDGLAGSGGGSGGAGGRG------GWLIGNGGAGGAGGAGGAGGNGA 394 G N G T G G G G G G + G G W G+G GG G G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 395 IGGDGGAAGFTGSNNDSAASTLYG 418 G GG +G G+ + AA +G Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.4 bits (73), Expect = 0.005 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 3/84 (3%) Query: 319 GGADGGTGGVAGVAASYNGVAIGGNGGNGGTGGTGTDGLAGSGGGSGGAGGRGGWLIGNG 378 G G G + + NG G G G + G+G GG G+G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG---GGS 60 Query: 379 GAGGAGGAGGAGGNGAIGGDGGAA 402 G G GG G +GG GG+ A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.0 bits (72), Expect = 0.006 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 160 GNGGNAGLIGNGGA--GGNGGAGAAGGTGGNGGWLYGSGGAGGAGGNALVAGGTGGNGGA 217 G G N G G GG G G GG GW + GG G+ + GG G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 218 GGAAGLWGNGGAGGHGGSGLAGNSGVNP 245 G GNG +GG G+G ++ P Sbjct: 66 G------GNGNSGGGSGTGGNLSAVAAP 87 Score = 30.5 bits (68), Expect = 0.023 Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 9/114 (7%) Query: 309 DGGNGAQGGQGGADGGTGGVAGVAASYNGVAIGGNGGNGGTGGTGTDGLAGSGGGSGGAG 368 +GG G GGA G+G +S N GG+G GG G G G SGG Sbjct: 21 NGGPTGLGVGGGASDGSGW-----SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 369 GRGGWLIGNGGAGGAGGAGGAGGNGAIGGDGGAAGFTGSNNDSAASTLYGAHGG 422 G G GN A A A G G G A + +A + + A G Sbjct: 76 GTG----GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKG 125 Score = 30.1 bits (67), Expect = 0.029 Identities = 37/131 (28%), Positives = 44/131 (33%), Gaps = 17/131 (12%) Query: 423 TGGDGGAGGTGGHGGAGGAGGAGGVGGDGGWLIGDGGAGGQGGIGGMGGTGGAGGSGVAG 482 +GGDG TG H +G +GG G G G G + G+G S Sbjct: 2 SGGDGRGHNTGAHSTSGNI---------------NGGPTGLGVGG--GASDGSGWSSENN 44 Query: 483 AHGGNATSSIAAFGGDGGAGGDAGHGGMGGDGGNGGQGASGGRGGLLSGAQGVTGTAGDG 542 GG + S I GG G G GG G G A A G G Sbjct: 45 PWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Query: 543 GTGGAGGLHGA 553 + AG L A Sbjct: 105 VSISAGALSAA 115 Score = 30.1 bits (67), Expect = 0.031 Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 11/93 (11%) Query: 352 TGTDGLAGSGGGSGGAGGRGGWLIGNGGAGGAGGAGGAGGNGAIGGDGGAAGFTGSNNDS 411 +G DG + G +G G G G GGA G G G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH------ 55 Query: 412 AASTLYGAHGGTGGDGGAGGTGGHGGAGGAGGA 444 +G G G GG G +GG G GG A Sbjct: 56 -----WGGGSGHGNGGGNGNSGGGSGTGGNLSA 83
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.4 bits (79), Expect = 2e-04 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 12/71 (16%) Query: 60 GRLGRHLAAA----GHRVVGVDV-----DPALIEA--AEQDYPGPQWLVGDLAELDLPAR 108 G +G H++ GH+VVG+D D +L +A PG Q+ DLA+ + Sbjct: 10 GFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTD 69 Query: 109 GIAE-PFDVIV 118 A F+ + Sbjct: 70 LFASGHFERVF 80
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 31.7 bits (72), Expect = 0.005 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 111 DLDSGAIIAARDPHARHRPASIIKVLVAM-----VSIKELNQNKAVPGTNDD--SAAEGT 163 DL SG + A R S KV++ V + + + D + + Sbjct: 46 DLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVS 105 Query: 164 KVGVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQLGGMQTALEKINMLAAKLGGRDTRV 222 + + A GM TV +L + S N AA+ L +GG + ++G TR+ Sbjct: 106 EKHL-ADGM-TVGELCAAAITMSDNSAANLLLATVGG----PAGLTAFLRQIGDNVTRL 158
>cloacin#Cloacin signature. Length = 551 Score = 35.8 bits (82), Expect = 8e-04 Identities = 36/107 (33%), Positives = 43/107 (40%), Gaps = 6/107 (5%) Query: 722 SGGIGGPGGFAVAASGNGGQGGHAGLLWSSGGAGGAGAFSVSGPAGAGGHGGDAGWLGNG 781 SGG G ++ GG GL G + G+G S + P G GG G W G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGS 60 Query: 782 GAGGTGGISRNGNGGDGGAGGSGGELLGVGGAGGQGGQANAGGGTGT 828 G G G GNG GG G+GG L V G A + G G Sbjct: 61 GHGNGG-----GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 35.5 bits (81), Expect = 0.001 Identities = 35/104 (33%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 200 LMGTGGAGGAGGAGGFSGTGDGGSGGAGGAGGLLGGGGVGGAGGFSNGGTG-GVGGTGGA 258 + G G G GA SG +GG G G GG G G GG+G G+ GG+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 259 GGVLSGVVGAGGGHGGTGGYGAFDGGAGGVGGHAGLLGGPGGAG 302 G G G GG GTGG + G A G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.1 bits (80), Expect = 0.001 Identities = 39/109 (35%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 537 VAGSDGAGGSGGAAGLWGTGGTGGAGARSTTGNGGAGGAGGAGGWLSGDGGTGGTGGAAT 596 ++G DG G + GA T G TG G GGA GW S + GG G+ Sbjct: 1 MSGGDGRGHNTGAHS------TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI 54 Query: 597 FNGATGGNGGDAGNGGLFGAGGNGGAGGAGLGNPGFG-GAGGNGGAGGL 644 G G+G GNG G G GG A FG A GAGGL Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 34.7 bits (79), Expect = 0.002 Identities = 31/106 (29%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 262 LSGVVGAGGGHGGTGGYGAFDGGAGGVGGHAGLLGGPGGAGGDGGDTFGGGSGGAGGAGG 321 +SG G G G G +GG G+G G G G + +GGGSG GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW--SSENNPWGGGSGSGIHWGG 58 Query: 322 DGGWAFGSGGTGGTGGYGGAGGAGGSGGDAGLLFSNGGAGGTGGFG 367 G G G GG G G F G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.003 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 754 AGGAGAFSVSGPAGAGGH-GGDAGWLGNGGAGGTGGISRNGNGGDGGAGGSGGELLGVGG 812 +GG G +G G+ G LG GG G + N GG GSG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 813 AGGQGGQANAGGGTGTGGEG 832 G GG N+GGG+GTGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.003 Identities = 31/116 (26%), Positives = 37/116 (31%), Gaps = 8/116 (6%) Query: 344 AGGSGGDAGLLFSNGGAGGTGGFGETGGEGGAGGGAGWLGDGGAGGTGGAANIGSGGDGG 403 +GG G + GG G GGA G+GW + G G + I GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 404 GGGTGGTLLGNGGAGGAGGHGPTDGGAGGTGGNAVVVGNGGNGGIGGTGPTTGTTG 459 G NGG G G G GG V G G G + Sbjct: 62 HG--------NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 33.9 bits (77), Expect = 0.003 Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 377 GGAGWLGDGGAGGTGGAANIGSGGDG-GGGGTGGTLLGNGGAGGAGGHGPTDGGAGGTGG 435 GG G + GA T G N G G G GGG + G+ + GG G GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 436 NAVVVGNGGNGGIGGTGPTTGTTGAGGIGGLLLGLDGYNAPTSTSP 481 GNGG G G G TG + + G + P + Sbjct: 63 -----GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 33.9 bits (77), Expect = 0.003 Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 2/107 (1%) Query: 217 GTGDGGSGGAGGAGGLLGGG--GVGGAGGFSNGGTGGVGGTGGAGGVLSGVVGAGGGHGG 274 G G G + GA G + GG G+G GG S+G GG SG+ GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 275 TGGYGAFDGGAGGVGGHAGLLGGPGGAGGDGGDTFGGGSGGAGGAGG 321 GG GG G GG+ + P G T G G + G Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.9 bits (77), Expect = 0.003 Identities = 24/77 (31%), Positives = 32/77 (41%) Query: 792 NGNGGDGGAGGSGGELLGVGGAGGQGGQANAGGGTGTGGEGGDGGDAGLIGDGGNGGNAG 851 +G G + GA + G + G G GG A+ G G + GG I GG G+ Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 852 TDTDGTPTGDPGTGGTG 868 +G G GTGG Sbjct: 65 GGGNGNSGGGSGTGGNL 81 Score = 33.5 bits (76), Expect = 0.004 Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 8/115 (6%) Query: 582 LSGDGGTGGTGGAATFNGATGGNGGDAGNGGLFGAGGNGGAGGAGLGNPGFGGAGGN--- 638 +SG G G GA + +G G G GG G + G+G + NP GG+G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGG----GASDGSGWSSENNPWGGGSGSGIHW 56 Query: 639 -GGAGGLLSGLVGAGGGHGGAGGLGVSPSTPAALAGGGIGGAGGDAGLLGGAGGA 692 GG+G G G GG G GG + + P A + G + + GA Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.004 Identities = 27/80 (33%), Positives = 31/80 (38%) Query: 329 SGGTGGTGGYGGAGGAGGSGGDAGLLFSNGGAGGTGGFGETGGEGGAGGGAGWLGDGGAG 388 SGG G G +G G L GGA G+ G G G+G GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 389 GTGGAANIGSGGDGGGGGTG 408 G N SGG G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 33.1 bits (75), Expect = 0.005 Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 7/85 (8%) Query: 775 AGWLGNGGAGGTGGISRNGNGGDGGAGGSGGELLGVG-------GAGGQGGQANAGGGTG 827 +G G G G S N NGG G G GG G G GG G + GGG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 828 TGGEGGDGGDAGLIGDGGNGGNAGT 852 G GG+G G G GGN Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.005 Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 1/106 (0%) Query: 136 TGANGAAGGWLLGDGGAGGSGAPGMAGGNGGAAGLWGTGGAGGAGGRTFNGDGGNGGAGG 195 TGA+ +G G G G G G WG GG+G GNGG G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSGHGNGGGNG 69 Query: 196 AGGWLMGTGGAGGAGGAGGFSGTGDGGSGGAGGAGGLLGGGGVGGA 241 G GTGG A A G + GAGG + G + A Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 32.8 bits (74), Expect = 0.007 Identities = 34/123 (27%), Positives = 41/123 (33%), Gaps = 7/123 (5%) Query: 528 GDGGAGGSAVAGSDGAGGSGGAAGLWGTGGTGGAGARSTTGNGGAGGAGGAGGWLSGDGG 587 G G G + A S +GG GL GG S+ N GG+G W G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 588 TGGTGGAATFNGATGGNGGDAGNGGLFGAGGNGGAGGAGLGNPGFGGAGGNGGAGGLLSG 647 G G GG G L G L PG GG + AG L + Sbjct: 63 GNGGGNG-------NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Query: 648 LVG 650 + Sbjct: 116 IAD 118 Score = 32.0 bits (72), Expect = 0.010 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Query: 148 GDGGAGGSGAPGMAGGNGGAAGLWGTGGAGGAGGRTFNGDGGNGGAGGAGGWLMGTGGAG 207 GDG +GA +G G G GG G + + GG G+G G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 208 GAGGAGGFSGTGDGGSGGAGGAGGLLGGGGVGGAGGFSNGGTGGVGGTG 256 G G+G SGG G GG L A GF T G GG Sbjct: 64 NGG--------GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.013 Identities = 27/82 (32%), Positives = 31/82 (37%) Query: 313 SGGAGGAGGDGGWAFGSGGTGGTGGYGGAGGAGGSGGDAGLLFSNGGAGGTGGFGETGGE 372 SGG G G + GG G G GGA G + GG G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 373 GGAGGGAGWLGDGGAGGTGGAA 394 G GGG G G G G +A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 31.6 bits (71), Expect = 0.014 Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 6/101 (5%) Query: 300 GAGGDGGDTFGGGSGGAGGAGGDGGWAFGSGGTGGTGGYGGAGGAGGSGGDAGLLFSNGG 359 G T G +GG G G GG + GSG + +GG G+G G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG------GGSG 61 Query: 360 AGGTGGFGETGGEGGAGGGAGWLGDGGAGGTGGAANIGSGG 400 G GG G +GG G GG + A G + G+GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.8 bits (69), Expect = 0.027 Identities = 21/80 (26%), Positives = 27/80 (33%) Query: 301 AGGDGGDTFGGGSGGAGGAGGDGGWAFGSGGTGGTGGYGGAGGAGGSGGDAGLLFSNGGA 360 +GGDG G +G G GG G+ G G +G+ + G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 361 GGTGGFGETGGEGGAGGGAG 380 G GG G G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.028 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 398 SGGDGGGGGTGGTLLGNGGAGGAGGHGPTDGGAGGTGGNAVVVGNGGNGGIGGTGPTTGT 457 SGGDG G TG GG G G G + G+G ++ N GG G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSE---NNPWGGGSGSGIHWGG 58 Query: 458 TGAGGIGG 465 G GG Sbjct: 59 GSGHGNGG 66
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 2e-04 Identities = 39/107 (36%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 624 AGGDGMAGTSGADATVAGATGGAGGAGGGGGAGGDGGSGGTHAGNGGDGGIGGKGGAGGL 683 +GGDG +GA +T GG G G GGGA G + GG G G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG--IHWGGG 59 Query: 684 GGHGATGGAGKQAGANGDDGGDGGVGGAGGSG----GAGGAGGGAVA 726 GHG GG G G +G G V G GAGG AV+ Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 35.1 bits (80), Expect = 0.003 Identities = 42/124 (33%), Positives = 48/124 (38%), Gaps = 4/124 (3%) Query: 514 GGDGALGGAAGEGGAGGNGAAGPTGGDGGAGGAGGDPGVGGNGGIGGDSGNGTHAASGAT 573 GGDG G G GN GPTG G G + G N GG SG+G H G+ Sbjct: 3 GGDGR-GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 574 AGDDGTGTRGISGNGGAGGRGAAATVAG---GAGGAGGAGGDGGRIGSGGAGGAGGDGMA 630 G+ G G+G G A A A GAGG I +G A D MA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Query: 631 GTSG 634 G Sbjct: 122 ALKG 125 Score = 34.3 bits (78), Expect = 0.004 Identities = 27/90 (30%), Positives = 34/90 (37%) Query: 850 AGGDGMAGTSGADAAVAGGSGGDGSAGGSGGAGGDGGKGGAGAGNGGDGGVGGNGAAGGD 909 +GGDG +GA + +GG G GGA G GG G G + G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 910 GGDGADGKLMSVHNGAGGNGGDSGAGGAGG 939 G+G +G GGN A A G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 34.3 bits (78), Expect = 0.005 Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 1064 GDGGRLGNGGTGGAGGAGRVGAEGSGGLAAGDNGGAGQAGGTGGSGGAGGKGGSEFGNGG 1123 G GR N G G G G+ G + G+G + GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNIN-GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1124 NGGAGGAGGDGGVGGTGAGGA 1144 +G GG G GG GTG + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 33.5 bits (76), Expect = 0.008 Identities = 28/100 (28%), Positives = 35/100 (35%) Query: 713 GSGGAGGAGGGAVAAGYVSGGHGAGGVGGDGALGGAAGDGGAGAAGSAAVNDGAGGAGGA 772 G G G G +G ++GG GVGG + G G + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 773 GGDPGAGGKGGIGGDSGNGTHAASGATAGDDGTGARGISG 812 G G G GG G GN + A+ G G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.1 bits (75), Expect = 0.009 Identities = 39/117 (33%), Positives = 45/117 (38%), Gaps = 6/117 (5%) Query: 983 IGGGDGSGGGTYGVDPTGGAGGSGGDSGYNGAGGAGGTGSGISFSGSTTLTAGSGNGGNG 1042 + GGDG G T G SG +G G GG S S S G G+G Sbjct: 1 MSGGDGRGHNT------GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI 54 Query: 1043 GAGADSGWSASSPNGGDGGVGGDGGRLGNGGTGGAGGAGRVGAEGSGGLAAGDNGGA 1099 G SG NG GG G GG L A G + G+GGLA + GA Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.8 bits (74), Expect = 0.013 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 6/86 (6%) Query: 1032 LTAGSGNGGNGGAGADSGWSASSPNGGDGGVGGDGGRLGNGGTGGAGGAGRVGAEGSGGL 1091 ++ G G G N GA + SG + NGG G+G GG + G+G + G G+ Sbjct: 1 MSGGDGRGHNTGAHSTSG----NINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGI 54 Query: 1092 AAGDNGGAGQAGGTGGSGGAGGKGGS 1117 G G G GG G SGG G GG+ Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 32.8 bits (74), Expect = 0.014 Identities = 25/80 (31%), Positives = 32/80 (40%) Query: 827 GGAGGAGGAGGDGGRIGSGGAGGAGGDGMAGTSGADAAVAGGSGGDGSAGGSGGAGGDGG 886 G GA G+ +G G G +G S + GGSG GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 887 KGGAGAGNGGDGGVGGNGAA 906 G +G G+G G + A Sbjct: 68 NGNSGGGSGTGGNLSAVAAP 87 Score = 32.4 bits (73), Expect = 0.016 Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 1416 GDGGNGGNGANGQTGGYIHGASGGSGGASGAGGAGGSGGADSNGTTSASGGTGAAGTWGN 1475 G G G N T G I+G G G GA G S+ GG+G+ WG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGAS----DGSGWSSENNPWGGGSGSGIHWGG 58 Query: 1476 GGNGGNGADGAGGEAGGQGGRGGDSLYGTA 1505 G GNG G GG G G S Sbjct: 59 GSGHGNGGGN-GNSGGGSGTGGNLSAVAAP 87 Score = 32.4 bits (73), Expect = 0.016 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 417 GAGGSGGSGGSGGNGGWLLGVGGAGGVGGLG--GAGGAGAAGGVGGVGGDAITPGGAGGT 474 G G G + G+ G + G GVGG G+G + GG G I GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 475 GGIGGAGGAGGDGGAGGAGGRGGARGLFGLHGSAGAGGIG 514 G GG G +GG G GG A FG + G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.019 Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Query: 782 GGIGGDSGNGTHAASGATAGDDGTGARGISGNGGAGGRGADATVAGGAGGAGGAGGDGGR 841 GG G G H+ SG G G + G+G + GG+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 842 IGSGGAGGAGGDGMAGTSGADAAVAGGSGGDGSAGGSGGAGGDGGKGGAGA 892 GG G +GG +GT G +AVA A + GAGG AGA Sbjct: 63 GNGGGNGNSGGG--SGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.4 bits (73), Expect = 0.019 Identities = 28/100 (28%), Positives = 34/100 (34%) Query: 1378 GAGGTGGVGGAGGAAGAAPAGNAGSLGAGGVGGTGGQGGDGGNGGNGANGQTGGYIHGAS 1437 G G G GA +G G G GG G + G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1438 GGSGGASGAGGAGGSGGADSNGTTSASGGTGAAGTWGNGG 1477 G GG +GG G+GG S + G A T G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.0 bits (72), Expect = 0.021 Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 11/112 (9%) Query: 1077 AGGAGRVGAEGSGGLAAGDNGGAGQAGGTGGSGGAGGKGGSEFGNGGNGGAGGAGGDGGV 1136 +GG GR +G + N G G G G + G G S N GG+G GG Sbjct: 2 SGGDGR--GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 1137 GGTGAGGAVGNALSNDIGGGTGGDGGTGGAGGSGGAGGKGGTAAAGNAGEQG 1188 G G GG G +GG GTGG + A G A G G Sbjct: 60 SGHGNGGG---------NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.028 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 7/119 (5%) Query: 936 GAGGKGGNGGTAAAGTQGHGGNGGNGGLAGIAGDGGDGATGTYDSRLIGGGDGSGGGTYG 995 G G+G N G + +GG G G+ G DG+ + ++ GGG GSG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTG----LGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 996 VDPTGGAGGSGGDSGYNGAGGAGGTGSGISFSGSTTLTAGSGNGGNGGAGADSGWSASS 1054 G G GG+ G G GG S ++ + A S G G A + S + S+ Sbjct: 59 G---SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114 Score = 31.6 bits (71), Expect = 0.031 Identities = 26/90 (28%), Positives = 33/90 (36%) Query: 1382 TGGVGGAGGAAGAAPAGNAGSLGAGGVGGTGGQGGDGGNGGNGANGQTGGYIHGASGGSG 1441 +GG G + +GN G G G G G + N G G GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1442 GASGAGGAGGSGGADSNGTTSASGGTGAAG 1471 +G G GG+ + G SA A G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 31.2 bits (70), Expect = 0.035 Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 831 GAGGAGGDGGRIGSGGAGGAGGDGMAGTSGADAAVAGGSGGDGSAGGSGGAGGDGGKGGA 890 G G G + G + G G G+ GA S + GGSG GG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG--GS 60 Query: 891 GAGNGGDGGVGGNGAAGGDGG 911 G GNGG G G G+ G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 31.2 bits (70), Expect = 0.037 Identities = 29/109 (26%), Positives = 38/109 (34%) Query: 555 NGGIGGDSGNGTHAASGATAGDDGTGTRGISGNGGAGGRGAAATVAGGAGGAGGAGGDGG 614 +GG G G H+ SG G G + G+G GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 615 RIGSGGAGGAGGDGMAGTSGADATVAGATGGAGGAGGGGGAGGDGGSGG 663 GG G +GG G + + A G + G G S G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.2 bits (70), Expect = 0.037 Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 828 GAGGAGGAGGDGGRIGSGGAGGAGGDGMAGTSGADAAVAGGSGGDGSAGGSGGAGGDGGK 887 G G GA G I G G G G + G+ + G GS G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 888 GGAGAGNGGDG-GVGGNGAA 906 G G GN G G G GGN +A Sbjct: 64 NGGGNGNSGGGSGTGGNLSA 83 Score = 30.8 bits (69), Expect = 0.048 Identities = 30/110 (27%), Positives = 33/110 (30%) Query: 1348 TGGSGGTGGVGGRGTDGVETGSTGLFGTKGGAGGTGGVGGAGGAAGAAPAGNAGSLGAGG 1407 +GG G G T G G G GGA G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1408 VGGTGGQGGDGGNGGNGANGQTGGYIHGASGGSGGASGAGGAGGSGGADS 1457 G GG G GG G G N + GAGG S A + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 30.8 bits (69), Expect = 0.048 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 8/118 (6%) Query: 584 ISGNGGAGGRGAAATVAGGAGGAGGAGGDGGRIGSGGAGGAGGDGMAGTSGADATVAGAT 643 +SG G G A + +G G G GG G + G G + + +G+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGG-------GASDGSGWSSENNPWGGGSGSG 53 Query: 644 GGAGGAGGGGGAGGDGGSGGTHAGNGGDGGIGGKGGAGGLGGHGATGGAGKQAGANGD 701 GG G G GG+G SGG +G GG+ A G G G + Sbjct: 54 IHWGGGSGHGNGGGNGNSGG-GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 3e-04 Identities = 26/72 (36%), Positives = 32/72 (44%) Query: 170 GIGGAGGSGGAGGTGGWLYGNGGAGGAGGAGAPGPVSFNGNNGGNGGNGGAAGWWGTGGA 229 G G G + GA T G + G G GG + G + NN GG+G W G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 230 GGAGGEGGAAGG 241 G GG G + GG Sbjct: 63 GNGGGNGNSGGG 74 Score = 37.4 bits (86), Expect = 3e-04 Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Query: 643 GRGGIGGQGGTGGEAGGGTGIHAGNGGTGGNGGGGGWLSGDAGAGGQGGASVASNYIAGG 702 GRG G T G GG G G GG G GW S + GG G+ + +G Sbjct: 6 GRGHNTGAHSTSGNINGGPT---GLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 703 GGAGGNGGAAGLFGAGGAGGTGGTGGNGNAPAGGDAGHGGQG 744 G GGNG + G G GG PA G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.5 bits (81), Expect = 0.001 Identities = 35/89 (39%), Positives = 41/89 (46%), Gaps = 6/89 (6%) Query: 607 GDGGTGGTGGDAVAGLPGVNGGNGGNGGAGGAAGWWGRGGIGGQGGTGGEAGGGTGIHAG 666 GDG TG + +G +NGG G G GGA+ G G G G+GIH G Sbjct: 4 GDGRGHNTGAHSTSG--NINGGPTGLGVGGGASDGSGWSSENNPWG----GGSGSGIHWG 57 Query: 667 NGGTGGNGGGGGWLSGDAGAGGQGGASVA 695 G GNGGG G G +G GG A A Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.1 bits (80), Expect = 0.001 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 822 GNGGAGGQGGVAGTPDGVDGLLGGTGGAGGTGGTAGWLYGSGGSGGAGGAGTASFYPGST 881 G G G G T ++G G G GG +GW + GG G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 882 GGNGGNGGNGGAAQVIGSGGSGGAAGTGGAGG 913 G GGNG +GG + G+GG+ A A G Sbjct: 63 GNGGGNGNSGGGS---GTGGNLSAVAAPVAFG 91 Score = 35.1 bits (80), Expect = 0.002 Identities = 35/107 (32%), Positives = 40/107 (37%), Gaps = 16/107 (14%) Query: 680 LSGDAGAGGQGGASVASNYIAGGGGAGGNGGAAGLFGAGGAGGTGGTGGNGNAPAGGDAG 739 +SG G G GA S I GG G GG G + N P GG +G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGL---------GVGGGASDGSGWSSENNPWGGGSG 51 Query: 740 HGGQGGYGGWLAGSGGAGGTGGVGGLGDSASGTGGSGGGGGAARLFG 786 G G G GG G +GG SGTGG+ A FG Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGG-------GSGTGGNLSAVAAPVAFG 91 Score = 34.7 bits (79), Expect = 0.002 Identities = 41/117 (35%), Positives = 47/117 (40%), Gaps = 10/117 (8%) Query: 436 GFGGSGGNGGTGGIGGLIGNGGAGGVGGAGNTNQVSGYSG-NGGNGGNGGAAQLIGAGGG 494 G G G N G G I NGG G+G G + SG+S N GG G+ G G G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 495 GGEGGVGGTGAAGVTGSAGASGVGGRLYSGNGIPDIFGRPLIGDGADGAPGTGQAGG 551 G GG G S G SG GG L S P FG P + G + G Sbjct: 62 HGNGGGNG-------NSGGGSGTGGNL-SAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 34.3 bits (78), Expect = 0.003 Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 382 GDGAAGGAGGAGG-ASQTFTGDGGAGGTGGAGGWLYGNGGAGGSGGAGGAGIGTGGFGGS 440 G G GA G + TG G GG GW N GG G+G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 441 GGNGGTGGIGGLIGNGGA 458 GGNG +GG G GN A Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 33.1 bits (75), Expect = 0.005 Identities = 29/79 (36%), Positives = 35/79 (44%) Query: 154 GGAGGAAGLIGNGGAGGIGGAGGSGGAGGTGGWLYGNGGAGGAGGAGAPGPVSFNGNNGG 213 G GA GN G G G G + G+G N GG+G G S +GN GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 214 NGGNGGAAGWWGTGGAGGA 232 NG +GG +G G A A Sbjct: 68 NGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.005 Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 3/115 (2%) Query: 403 GGAGGTGGAGGWLYGNGGAGGSGGAGGAGIGTGGFGGSGGNGGTGGIGGL-IGNGGAGGV 461 GG G G GG G G G + G G S N GG G I GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 462 GGAGNTNQVSGYSGNGGNGGNGGAAQLIG--AGGGGGEGGVGGTGAAGVTGSAGA 514 G G G SG GGN A G A G GG+ + +AG +A A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 33.1 bits (75), Expect = 0.005 Identities = 23/64 (35%), Positives = 27/64 (42%) Query: 122 ADGTAPGQAGGAGGLLYGNGGNGAAGTNPGVAGGAGGAAGLIGNGGAGGIGGAGGSGGAG 181 G G G G + G+G + N GG+G G G G GG G SGG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 182 GTGG 185 GTGG Sbjct: 76 GTGG 79 Score = 33.1 bits (75), Expect = 0.006 Identities = 31/116 (26%), Positives = 37/116 (31%) Query: 719 GAGGTGGTGGNGNAPAGGDAGHGGQGGYGGWLAGSGGAGGTGGVGGLGDSASGTGGSGGG 778 G G G G + + G G G GG GSG + GG S GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 779 GGAARLFGDGGSGGNGGVGGPGTVVFAGGGGSGGTGGAAGWLIGNGGAGGQGGVAG 834 G GG G GG A G + T GA G + +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 32.0 bits (72), Expect = 0.014 Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 384 GAAGGAGGAGGASQTFTGDGGAGGTGGAGGWLYGNGGAGGS---GGAGGAGIGTGGFGGS 440 G G G S + +GG G G GG G+G + + GG G+GI GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 441 GGNGGTGGIGGLIGNGGAG 459 G GG G GG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 30.5 bits (68), Expect = 0.033 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 2/84 (2%) Query: 140 NGGNGAAGTNPGVAGGAGGAAGLIGNGGAGG--IGGAGGSGGAGGTGGWLYGNGGAGGAG 197 NGG G G + G+G ++ GG G I GGSG G G G G G Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 198 GAGAPGPVSFNGNNGGNGGNGGAA 221 + PV+F G GG A Sbjct: 81 LSAVAAPVAFGFPALSTPGAGGLA 104
>cloacin#Cloacin signature. Length = 551 Score = 39.3 bits (91), Expect = 7e-05 Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 440 GGNGGTGGIGGLIGNGGAGGAGGAGSASGPSGYSGGNGGNGGNGGAAQLIGAGGGGGVAG 499 G N G G I NGG G G G AS SG+S N GG G+ G G G G G Sbjct: 8 GHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 500 VGGAGGTGAAAGVTGSAGASGV 521 G G G+ G SA A+ V Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPV 88 Score = 39.3 bits (91), Expect = 8e-05 Identities = 43/132 (32%), Positives = 48/132 (36%), Gaps = 9/132 (6%) Query: 767 GGSGGAGGTGGTGGSGDIYAGAGGTGGSGGAARLFGTGGTGGAGGVGGASDFQFAGSGGS 826 GG G TG SG+I G G G GGA+ G G G S + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 827 GGTGGAAGWLIGNGGSGGQGGLAGTADPVTGLFGGTGGAGGAGGAAGWLYGAGGSGGAGG 886 G GG GGSG G L+ A PV F G G A S GA Sbjct: 63 GNGGGNGN---SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSI------SAGALS 113 Query: 887 AGTASVYPGLSG 898 A A + L G Sbjct: 114 AAIADIMAALKG 125 Score = 37.8 bits (87), Expect = 2e-04 Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 11/124 (8%) Query: 400 GAGGAGGTGGAGGWLYGNGGAGGAGGVGGAGIGTGGLGSNGGNGGTGGIGGLIGNGGAGG 459 G G G G + NGG G G GGA G+G N G G G+G Sbjct: 6 GRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWG---------GGSGSGI 54 Query: 460 AGGAGSASGPSGYSGGNGGNGGNGGAAQLIGAGGGGGVAGVGGAGGTGAAAGVTGSAGAS 519 G GS G G +G +GG G GG + A G + G G A ++ A ++ Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114 Query: 520 GVGG 523 + Sbjct: 115 AIAD 118 Score = 36.6 bits (84), Expect = 5e-04 Identities = 30/101 (29%), Positives = 38/101 (37%) Query: 713 GGSTGGSGGAGGNGGTAGLFGAGGAGGTGGTAGAGIAVGSNGGHGGQGGYGGWLGGSGGA 772 G G + GA G G G G + G+G + +N GG G W GGSG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 773 GGTGGTGGSGDIYAGAGGTGGSGGAARLFGTGGTGGAGGVG 813 G G G G + + A F T GAGG+ Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.1 bits (80), Expect = 0.002 Identities = 26/85 (30%), Positives = 33/85 (38%) Query: 838 GNGGSGGQGGLAGTADPVTGLFGGTGGAGGAGGAAGWLYGAGGSGGAGGAGTASVYPGLS 897 G G G G T+ + G G G GGA +GW GG G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 898 GGNGGNGGNGGAAQVIGNGGSGGTA 922 G GGNG +GG + GN + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 34.7 bits (79), Expect = 0.002 Identities = 35/106 (33%), Positives = 39/106 (36%), Gaps = 9/106 (8%) Query: 568 GSGAAGQAGGAGGAAGLIGNGGAGGTGGSGAAGGNGGAGGWLFGNGGNGGTGGDAVAGLP 627 G G GA +G I G G G GA+ G+G W N GG G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG----WSSENNPWGGGSGSGIHWGG 58 Query: 628 GLNGGNGGNGGAGGAAGWWGHGGIGGQGGTGGAAGGFANTAPSTNG 673 G GNGG G G G G GG A F A ST G Sbjct: 59 GSGHGNGGGNGNSG-----GGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 33.9 bits (77), Expect = 0.004 Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 381 GNGAAGGAGGAGG-ASQTFTGAGGAGGTGGAGGWLYGNGGAGGAGGVGGAGIGTGGLGSN 439 G G GA G + TG G GG GW N GG G G G G G+ Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 440 GGNGGTGGIGGLIGNGGAGGA 460 GGNG +GG G GN A A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.005 Identities = 38/116 (32%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 213 GNGGNGGAAGWWGT--GGAGGAGGEGGAAGGDPAGIAYGSTGGVGGNGGSGGNGGWFAGN 270 G G N GA G GG G G GGA+ G GG G+G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG---- 61 Query: 271 AGAGGNGGVGGDGNAADSGLVGGAGGVGGAGGAAGLFGDGGAGGQGGDGAVSDALA 326 G GG G G G+ L A V A G GG GA+S A+A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 33.1 bits (75), Expect = 0.005 Identities = 23/64 (35%), Positives = 27/64 (42%) Query: 122 ADGTAPGQAGGAGGLLYGNGGNGAAGTNPGVAGGAGGAAGLIGNGGAGGIGGAGGSGGAG 181 G G G G + G+G + N GG+G G G G GG G SGG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 182 GTGG 185 GTGG Sbjct: 76 GTGG 79 Score = 32.4 bits (73), Expect = 0.009 Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 3/110 (2%) Query: 308 GDGGAGGQGGDGAVSDALAASHGGTGGDGGRS---GWLSGNAGAGGAGGAGGSTNGIGNF 364 G G G G + S + G G GG S GW S N GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 365 AGNGGAGGNGGAAGLFGNGAAGGAGGAGGASQTFTGAGGAGGTGGAGGWL 414 GG G +GG +G GN +A A A G T G + G L Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112 Score = 31.6 bits (71), Expect = 0.016 Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 721 GAGGNGGTAGLFGAGGAGGTGGTAGAGIAVGSNGGHGGQGGYGGWLGGSGGAGGTGGTGG 780 G G G G G GG G G+ G++ G G W GGSG GG G Sbjct: 3 GGDGRGHNTGAHSTSG-NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 781 SGDIYAGAGGTGGSGGAARLFGTGGTGGAGGVGGASDFQFAGSGGSGGTG 830 G GG G SGG + GTGG A A F + G+GG Sbjct: 62 HG----NGGGNGNSGGGS---GTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.017 Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 4/107 (3%) Query: 354 AGGSTNGIGNFAGNGGAGGNGGAAGLFGNGAAGGAGGAGGASQTFTGAGGAGGTGGAGGW 413 +GG G A + NGG GL G A G + + G G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 414 LYGNGGAGGAGGVGGAGIGTGGLGSNGGNGGTGGIGGLIGNGGAGGA 460 G GG G G G GTGG S G L G G A Sbjct: 62 ----HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.022 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 425 GVGGAGIGTGGLGSNGG-NGGTGGIGGLIGNGGAGGAGGAGSASGPSGYSGGNGGNGGNG 483 G G G TG ++G NGG G+G G G + G+G + + G SG GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV--GGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 484 GAAQLIGAGGGGGVAGVGGAGGTGAAA 510 G G G GG +G GG AA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 31.2 bits (70), Expect = 0.024 Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 554 GGDGGWLYGNGGNGGSGAAGQAGGAGGAAGLIGNGGAGGTGGSGAAGGNGGAGGWLFGNG 613 GG G G G + GSG + + GG +G GG G G GGNG +GG G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSG--SGIHWGGGSGHGNGGGNGNSGGGSGTGG 79 Query: 614 GNGGTGGDAVAGLPGLNGGNGGNGGAGGAAG 644 G P L+ G +AG Sbjct: 80 NLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.2 bits (70), Expect = 0.025 Identities = 36/125 (28%), Positives = 43/125 (34%), Gaps = 1/125 (0%) Query: 736 GAGGTGGTAGAGIAVGS-NGGHGGQGGYGGWLGGSGGAGGTGGTGGSGDIYAGAGGTGGS 794 G G G GA G+ NGG G G GG GSG + GG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 795 GGAARLFGTGGTGGAGGVGGASDFQFAGSGGSGGTGGAAGWLIGNGGSGGQGGLAGTADP 854 G +GG G GG A A + T GA G + +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 855 VTGLF 859 + G F Sbjct: 123 LKGPF 127
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 5e-14 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 1/139 (0%) Query: 1 MSERSQYHHGGLRDAILTEAATLVAERGVGAVSVRELARRAGVSHNAYGHHFTDRRGLFT 60 M+ +++ R IL A L +++GV + S+ E+A+ AGV+ A HF D+ LF+ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ALAAQGFMLLAEALREARGNFLDGARAYVRFAIGHPGHYAV-MFDWSLIDRTDSDLAAAH 119 + + E E + F + +R + H V L+ Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 AAASMELARGASLLQDPKA 138 ++ +L + Sbjct: 121 GEMAVVQQAQRNLCLESYD 139
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 35.0 bits (80), Expect = 0.004 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 2518 ATPSETTDSTRNLAASTVDQIRQVFAEVLGLP--SVGADDNFFDIGGDSMHAVQLSAKAR 2575 A +T+ +T T + IR+ AE+L + ++ D G DS+ + L + R Sbjct: 215 ADVQKTSANTGKKNVFTCENIRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWR 274 Query: 2576 ALGLAVEVQDLFQCQTPEQ 2594 G V +L + T E+ Sbjct: 275 REGAEVTFVELAERPTIEE 293
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 26.8 bits (59), Expect = 0.012 Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 8/43 (18%) Query: 51 TEQELAALVAVLGSLRSTAPAAAPEPSRWGLPVDRLRYPVFSW 93 T Q L +LV AP P + + R P W Sbjct: 69 TNQGLESLV--------EAPTLPPLAANYNKEGYIKRLPADPW 103
>FLAGELLIN#Flagellin signature. Length = 507 Score = 40.4 bits (94), Expect = 3e-05 Identities = 34/272 (12%), Positives = 51/272 (18%), Gaps = 5/272 (1%) Query: 202 NAGAGGAGGPGLFGFNGGAGGAGGAGGLLGAG-GLGGAGGYGPGGVGGTGGAGGAGGLLA 260 + GL GFN G L + + G Y G + Sbjct: 158 DLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTD 217 Query: 261 GLVGAGGGHGGTGGFGAGGTGGDGGAGGNAGLFGGPGGAGGTGGVGTGGDGGNGGAGGNA 320 T D LF GT GG G+ Sbjct: 218 TTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDT 277 Query: 321 GALFGTGGAGGAGGSGVAGAGGVGGAGGNAGLLFSAGGVGGAGGYGSSDGGAGGAGGNGG 380 G +G G G V + + + + Sbjct: 278 FDYKGVTFTIDT-KTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTS 336 Query: 381 LLYSNGGVGGTGGYGAAAAGGAGGAGGRAGLAIGGGGAGGAGGEGATTGGDGGAGGTGVL 440 G + + A GD + Sbjct: 337 ---VVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTM 393 Query: 441 IGNGGNAGVGGTGPAAGATGVGGTSGLLLGLD 472 + +GV A T+ L +D Sbjct: 394 FIDKTASGVSTLINEDAAAAKKSTANPLASID 425
>PERTACTIN#Pertactin signature. Length = 922 Score = 32.0 bits (72), Expect = 0.009 Identities = 18/72 (25%), Positives = 25/72 (34%) Query: 280 WGVGATAAGPAPQPTYAPNPQETQVAFNGYAPVRPQYPPPPTPPPAGKRPGRRPVVVVAA 339 W + A PAP+P P PQ P +P PP P + P + Sbjct: 560 WSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELS 619 Query: 340 VVATALLIGSGI 351 A A + G+ Sbjct: 620 AAANAAVNTGGV 631
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 27.6 bits (61), Expect = 0.016 Identities = 8/31 (25%), Positives = 13/31 (41%) Query: 33 NGGAVETSSDVWELYPFFDTSDKKRLKRTCN 63 G A T + +E Y F +D + L + Sbjct: 219 RGAAYSTPDEKYEKYKFDTIADNENLNISSK 249
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 0.001 Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 1344 LSGANSAGARGGAGGAGGAGITGGAGGAGGAGSNGDGTSNQVEGQPGGDGGSGGIGGTGT 1403 +SG + G GA G I GG G G G DG+ E P G G GI G Sbjct: 1 MSGGDGRGHNTGAHSTSG-NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 1404 AGAGGTGGAGGDGGAGG 1420 +G G GG G GG G Sbjct: 60 SGHGNGGGNGNSGGGSG 76 Score = 36.2 bits (83), Expect = 0.001 Identities = 29/100 (29%), Positives = 33/100 (33%) Query: 573 GASGGGGQAGGSGGSGGAGGAGGALAGTGGAGGEGGTGGDGGTGGNGAGGAPGAAAGAAG 632 G G G G SG G L GGA G + G G+G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 633 GNGGNGGVGGSGGIGGNGGAAGVALAGSGHDGAQGAGGAG 672 GNGG G G G G +A A G G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.7 bits (79), Expect = 0.003 Identities = 35/109 (32%), Positives = 42/109 (38%) Query: 426 GAGGVGGTGGLISFLGGHGTGGAGGEGGSGGIAGDGGKGAAGTFGGGDGVGGAGGRGGDP 485 G G G G S G G G G G G G +GGG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 486 GLGGAGGAGGTGSTIGAHGADGARPNSGGNGGAGGQGADALGPAFTSGA 534 G GG G G GS G + + A P + G GA L + ++GA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 34.7 bits (79), Expect = 0.003 Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 1/103 (0%) Query: 1308 GGAGDGSSGGAGGRGGDGGAGITGAGGQGGAGGDGGLSGANSAGARGGAGGAGGAGITGG 1367 GG G G + GA G+ G TG G GGA G S N+ GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSG 61 Query: 1368 AGGAGGAGSNGDGTSNQVEGQPGGDGGSGGIGGTGTAGAGGTG 1410 G GG G++G G+ + G T GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.3 bits (78), Expect = 0.004 Identities = 35/106 (33%), Positives = 41/106 (38%), Gaps = 4/106 (3%) Query: 286 GGAGEGSGNGGVGGEGGRGGQWFGHGGGGGAGGAGGADAADGGHGGAGGAARLWGTGGHG 345 GG G G G G G G G GGGA G + + GG G+ WG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 346 GSGGAGGVGALGGAGESGGAGGAAGDGGAGGRGGWLIGTGGAGGLG 391 G+GG G G SG G + G + T GAGGL Sbjct: 63 GNGGGNG----NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.3 bits (78), Expect = 0.004 Identities = 29/82 (35%), Positives = 33/82 (40%) Query: 1195 GDGGAGGNGGDAIGFGSGNGGLGGGGGAGGTGANGGTGGHGGVGGFGDIGGKGGSGGTGG 1254 G G G N G G+ NGG G G GG G G G G GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1255 TGLTGAGGAGGAGGTGGQADSV 1276 G G +GG GTGG +V Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 33.9 bits (77), Expect = 0.005 Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 3/98 (3%) Query: 536 GGTGGDGGAGGLVGDGGNGGAGGRGATGGVGASATAPGASGGGGQAGGSGGSGGAGGAGG 595 G G G + G G G GA+ G G S+ GG G GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 596 ALAGTGGAGGEGGTGGDGGTGGNGAGGAPGAAAGAAGG 633 GG G G A G P + AGG Sbjct: 68 ---NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.9 bits (77), Expect = 0.005 Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 7/96 (7%) Query: 705 GAGGRGGDPGLGGAGGAGGAGSTTGAPGADGTRPTTGGNGGEGGRGADAVGAGGSGAAGG 764 G GRG + G G G T G G + G G + GGSG+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-------GASDGSGWSSENNPWGGGSGSGIH 55 Query: 765 AGGDGGLVGDGGHGGDGGHGATGAAGASAVAPGASG 800 GG G GG+G GG TG ++ AP A G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.9 bits (77), Expect = 0.005 Identities = 24/83 (28%), Positives = 28/83 (33%) Query: 549 GDGGNGGAGGRGATGGVGASATAPGASGGGGQAGGSGGSGGAGGAGGALAGTGGAGGEGG 608 GDG G +G + T G GG G G G G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 609 TGGDGGTGGNGAGGAPGAAAGAA 631 GG G G G+G +A AA Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.007 Identities = 29/92 (31%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Query: 899 GNGGRGEVGGLPGNGGDGGNGALGGGAGGNGGNGGNPGDSGTGGAGGTGSTTGMNGVSNS 958 G GRG G G+ G G G GG +G GG+GS G S Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 959 RIVVGGLWGNGGHGGTGGTGSAAGGPGGSGGA 990 GNGG G G GS GG + A Sbjct: 63 --------GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.009 Identities = 26/66 (39%), Positives = 32/66 (48%) Query: 1188 TGSTPDGGDGGAGGNGGDAIGFGSGNGGLGGGGGAGGTGANGGTGGHGGVGGFGDIGGKG 1247 T +GG G G GG + G G + GGG+G GG GHG GG G+ GG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 1248 GSGGTG 1253 G+GG Sbjct: 76 GTGGNL 81 Score = 32.8 bits (74), Expect = 0.013 Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 2/101 (1%) Query: 1033 AGGDGGAGGVGGTGGQGGTQAGNGGVGGAGGAG-GKGADGGNGANGD-SGNGVGSDGFAG 1090 +GGDG G G G G+G GGA G G N G SG+G+ G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1091 GNGGAGGSGGTGGDGGAGGLALADTGQDGAQGAGGDGGAGG 1131 G G GG G G L+ A GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.015 Identities = 27/81 (33%), Positives = 32/81 (39%) Query: 755 GAGGSGAAGGAGGDGGLVGDGGHGGDGGHGATGAAGASAVAPGASGGNGQTGGSGGAGGA 814 G G G GA G + G G G GA+ +G S+ GG+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 815 GGAGGTLAGHGGDGGAGGNGA 835 G GG GG G G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 32.4 bits (73), Expect = 0.015 Identities = 38/116 (32%), Positives = 47/116 (40%), Gaps = 9/116 (7%) Query: 615 TGGNGAGGAPGAAAGAAGGNGGNGGVGGSGGIG-GNGGAAGVALAGSGHDGAQGAGGAGG 673 +GG+G G GA + + NGG G+G GG G+G ++ G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 674 SGGMGGVAGDGGKGAAGAFAGGGGGGNDGVGGAGGRGGDPGLGGAGGAGGAGSTTG 729 G GG GG G G GGN A G P L G G A S + Sbjct: 62 HGNGGGNGNSGG--------GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 32.4 bits (73), Expect = 0.015 Identities = 22/61 (36%), Positives = 24/61 (39%) Query: 968 NGGHGGTGGTGSAAGGPGGSGGAGGTGGAGGHGGLWGNGGDGGTGGQGADGGAGISASAQ 1027 NGG G G G A+ G G S GG G G WG G G GG + G G Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 1028 G 1028 Sbjct: 81 L 81 Score = 32.4 bits (73), Expect = 0.015 Identities = 31/102 (30%), Positives = 38/102 (37%) Query: 677 MGGVAGDGGKGAAGAFAGGGGGGNDGVGGAGGRGGDPGLGGAGGAGGAGSTTGAPGADGT 736 M G G G A + +G GG G+G GG G G GS +G G+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 737 RPTTGGNGGEGGRGADAVGAGGSGAAGGAGGDGGLVGDGGHG 778 GG G G G+ G + AA A G L G G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.016 Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 799 SGGNGQTGGSGGAGGAGGAGGTLAGHGGDGGAGGNGANGGIGANGAHGTLGIAAGADGST 858 SGG+G+ +G +G G G G GGA + +G N G + G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGA--SDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 859 GGNGGVGGNGGVGGNGGNGGNGG--AAGVALGSGQDGAEGAGG 899 G+G GGNG GG G GGN AA VA G GAGG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.0 bits (72), Expect = 0.020 Identities = 34/106 (32%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 602 GAGGEGGTGGDGGTGGNGAGGAPGAAAGAAGGNGGNGGVGGSGGIGGNGGAAGVALAGSG 661 G G G G T GN GG G G G + G G S GG +G + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGP----TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 662 HDGAQGAGGAGGSGGMGGVAGDGGKGAAGAFAGGGGGGNDGVGGAG 707 G GG G SGG G G+ AA G G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.027 Identities = 24/76 (31%), Positives = 28/76 (36%) Query: 1245 GKGGSGGTGGTGLTGAGGAGGAGGTGGQADSVLLGDSGGGEGGSGGFGGTGLTTGGEGGR 1304 G+G + G T GG G G GG +D GG G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1305 GGIGGAGDGSSGGAGG 1320 GG G +G GS G Sbjct: 66 GGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.041 Identities = 28/81 (34%), Positives = 34/81 (41%) Query: 386 GAGGLGGVGGVGGSGGFGANAVTPGGAGGQGGAGGDGGAGGAGGVGGTGGLISFLGGHGT 445 G G G G + G T G GG G + GG+G I + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 446 GGAGGEGGSGGIAGDGGKGAA 466 G GG G SGG +G GG +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 30.8 bits (69), Expect = 0.043 Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 517 GAGGQGADALGPAFTSGATGGTGGDGGAGGLVGDGGNGGAGGRGATGGVGASATAPGASG 576 G G+G + + + GG G G GG G+G + GG S G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 577 GGGQAGGSGGSGGAGGAGGALAGTGGAGGEG----GTGGDGGTGGNGAGGAPGAA 627 G G GG+G SGG G GG L+ G T G GG + + GA AA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 30.8 bits (69), Expect = 0.048 Identities = 25/84 (29%), Positives = 28/84 (33%) Query: 1255 TGLTGAGGAGGAGGTGGQADSVLLGDSGGGEGGSGGFGGTGLTTGGEGGRGGIGGAGDGS 1314 +G G G GA T G + G GG G + G G GI G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1315 SGGAGGRGGDGGAGITGAGGQGGA 1338 G GG G GG TG A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.6 bits (64), Expect = 0.048 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 19/114 (16%) Query: 126 FVHDPAL-------IDAHGVNPDADVVDAYSYLALTID--TDWYLAWLAHEAEVAGVTAV 176 + DP L I+ +N + + + + + Y+ A + V Sbjct: 80 VLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEYMK-----ERAADIRDV 134 Query: 177 QRRIRGPLLEQEQRLRAEYGAEVIVNCAGLGARELADDSTLDLHRCALLRIVND 230 +R+ G L+ E A E + + A +L T L++ + D Sbjct: 135 SKRVLGHLIGVETGSLATIAEETV-----IIAEDLTPSDTAQLNKQFVKGFATD 183
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 26.7 bits (58), Expect = 0.012 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 10/81 (12%) Query: 4 ALHSQATRVPRGVGSE-GRVAPPFPNTAGKVSDGYPPNFLLTLAMAMALATATAWSAMSP 62 ALH+ T V G+ S PP P + G+ A ATA S +SP Sbjct: 138 ALHAPGTPVREGLRSHLDPRTPPLPPRERPHTSGH---------HGAGEARATAPSTVSP 188 Query: 63 FGPSLKPLSSQQLAVMRECVA 83 +GP + S +L +R +A Sbjct: 189 YGPEARAELSSRLTTLRNTLA 209
>cloacin#Cloacin signature. Length = 551 Score = 40.5 bits (94), Expect = 1e-04 Identities = 37/114 (32%), Positives = 48/114 (42%) Query: 786 TGGAGGNAGTGAGAAGNNGDGGAGGTGGNSGAQAGDGGAGAANTTIGGTGGAGGSGGNIG 845 +GG G TGA + N +GG G G GA G G + N GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 846 AGGAGGQGGAAGTTSGVGGASGTSGTSGQSIGTGGDGGAGGDGGTGTTGADAAA 899 G GG G + G + G S + GAGG + + GA +AA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 35.5 bits (81), Expect = 0.005 Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 272 AGGDNGGFAGGDGGHGGLLCGAGGDGGLGGGDGGNAGWLLGFGGHGGAGGDGGFAGGEGG 331 +GGD G G G + G G+GGG +GW GG G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 332 NGGWLLGFGGHGGTGGIGGGTGGAGGAGGLVMGFG 366 +G GG G G G GTGG A + FG Sbjct: 62 HGN-----GGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 34.7 bits (79), Expect = 0.007 Identities = 28/84 (33%), Positives = 38/84 (45%) Query: 884 AGGDGGTGTTGADAAAGSGLGGDIGGTGGAGGAGGTGGSGGTDSGVGGSGGVGGVGGTGG 943 +GGDG TGA + +G+ GG G G G + G+G S + GGSG GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 944 QGGAGSDNSANAGVAGGAGGQGGA 967 G G + ++ G G A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 34.3 bits (78), Expect = 0.010 Identities = 25/81 (30%), Positives = 32/81 (39%) Query: 1251 GTGGAGGQGGTGGAAGTGTGGIQGAGGQGGTGGTGGTGGSGGDGTDNSTTPGAAGGAGGQ 1310 G G G T G G G+ GG G G G+ + G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1311 GGTGGTGGAAGSGGTGSTMGA 1331 GG G +GG +G+GG S + A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAA 86 Score = 33.9 bits (77), Expect = 0.015 Identities = 27/78 (34%), Positives = 34/78 (43%) Query: 575 GGDGGTGGTGGEGTDAAAGSGLTGGTGYAGGTGGTGGAGGNSGLGGTNGSGGHGGTGGTG 634 GGDG TG T G TG G + G+G + N+ GG +GSG H G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 635 GTGGTGGSGADNTTGIGG 652 G GG G+ + G Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 33.5 bits (76), Expect = 0.016 Identities = 25/86 (29%), Positives = 33/86 (38%) Query: 1944 GTGGAGGTGGTGGAAGTGTGGIQGAGGQGGTGGTGGQGGTGGDGTDNSTTPGAAGGAGGQ 2003 G G G T G G G+ GG G + G G+ + G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 2004 GGTGGTGGAAGQGGTGSTSGSAGSSG 2029 GG G +GG +G GG S + + G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.5 bits (76), Expect = 0.017 Identities = 26/84 (30%), Positives = 33/84 (39%) Query: 1364 GQGASGGAGGTGGTGGAAGTGTGGIQGAGGQGGTGGTGGQGGTGGDGTDNSTTPGAAGGA 1423 G G G T G G G+ GG G + G G+ + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1424 GGQGGTGGTGGAAGTGGTGSTMGA 1447 G GG G +GG +GTGG S + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.019 Identities = 25/79 (31%), Positives = 36/79 (45%) Query: 910 TGGAGGAGGTGGSGGTDSGVGGSGGVGGVGGTGGQGGAGSDNSANAGVAGGAGGQGGAGG 969 +GG G TG + + GG G+G GG G S+N+ G +G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 970 TGGAAGSGGTGSVAGADGS 988 G G+G +G +G G+ Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 33.1 bits (75), Expect = 0.021 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 726 GAGGAGGNSGLGGTNGSGGHGGTGGTGGTGGTGGSGADALDGSGASGHDGGDSGAGGDG- 784 G G G N+G T+G+ G TG G G + GSG + + G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 785 GTGGAGGNAGTGAGAAGNN 803 G GG GN+G G+G GN Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 33.1 bits (75), Expect = 0.025 Identities = 27/77 (35%), Positives = 33/77 (42%) Query: 693 GGDGGTGGTGGQGTDAAAGTGLTGGTGYAGGTGGAGGAGGNSGLGGTNGSGGHGGTGGTG 752 GGDG TG T G TG G + G+G + N+ GG +GSG H G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 753 GTGGTGGSGADALDGSG 769 G GG G+ G Sbjct: 63 GNGGGNGNSGGGSGTGG 79 Score = 33.1 bits (75), Expect = 0.026 Identities = 25/84 (29%), Positives = 32/84 (38%) Query: 2634 GQGASGGAGGTGGTGGAAGTGTGGIQGAGGQGGTGGAGGSGGTGGDGTDNSTTPGAAGGA 2693 G G G T G G G+ GG G G G+ + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 2694 GGQGGTGGTGGAAGSGGTGSTMGA 2717 G GG G +GG +G+GG S + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.8 bits (74), Expect = 0.032 Identities = 31/82 (37%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Query: 153 AGGSAGLWGNGGSGGSGGIGGGTGGNGGSGGWLLGRGGIGGAGGTGGGSGGSGGGAWLFG 212 +GG G SG I GG G G GG G G + GGSG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG---ASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 213 DGGAGGMGGTGGSGGGFGGTGG 234 G G GG G SGGG G G Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGN 80 Score = 32.4 bits (73), Expect = 0.037 Identities = 25/84 (29%), Positives = 32/84 (38%) Query: 2402 GQGASGGAGGTGGTGGAAGTGTGGTQGAGGQGGTGGTGGQGGTGGDGTDNSTTPGAAGGA 2461 G G G T G G G GG G + G G+ + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 2462 GGQGGTGGTGGAAGSGGTGSTMGA 2485 G GG G +GG +G+GG S + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.037 Identities = 25/84 (29%), Positives = 32/84 (38%) Query: 2518 GQGASGGAGGTGGTGGAAGTGTGGTQGAGGQGGTGGTGGQGGTGGDGTDNSTTPGAAGGA 2577 G G G T G G G GG G + G G+ + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 2578 GGQGGTGGTGGAAGSGGTGSTMGA 2601 G GG G +GG +G+GG S + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.038 Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 148 GQAGGAGGSAGLWGNGGSGGSGGIGGGTGGNGGSGGWLLGRGGIGGAGGTGGGSGGSGGG 207 G G A +GG G+G G G + GSG W GG G+G GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSGH 62 Query: 208 AWLFGDGGAGGMGGTGGSGGGFGGTGGHGGLLYGNGGAGGAGAT 251 G+G +GG GTGG+ G GAGG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 32.4 bits (73), Expect = 0.041 Identities = 27/86 (31%), Positives = 35/86 (40%) Query: 462 AGGDGGAGGAGADGSNGVGDGGNGATGGGGGVGGDGGAGGQAALLFGCGGTGGHAGAGGA 521 +GGDG GA ++G +GG G GGG G + G G+G H G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 522 GGGGGTGADSLTGIGGAGGDGGIGGA 547 G GG +S G G G + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 32.4 bits (73), Expect = 0.042 Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 744 GHGGTGGTGGTGGTGGSGADALDGSGASGHDGGDSGAGGDGGTGGAGGNAGTGAGAAGNN 803 G G G G T G+ G G G SG + G G +G G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 804 GDGGAGGTGGNSGAQAGDGGAGAANTTIG----GTGGAGGSGGNIGAG 847 G+GG G G G+ A AA G T GAGG +I AG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.4 bits (73), Expect = 0.045 Identities = 33/106 (31%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 2588 GAAGSGGTGSTMGAEGSSGDGGTGGLGGAGGTGGQGTTAVNPGDTGGQGASGGAGGTGGT 2647 G G G G+ G TG G G + G G ++ N GG G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 2648 GGAAGTGTGGIQGAGGQGGTGGAGGSGGTGGDGTDNSTTPGAAGGA 2693 G G G G GG G G G +TPGA G A Sbjct: 63 GNGGGNGNSG----GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.047 Identities = 28/78 (35%), Positives = 31/78 (39%) Query: 212 GDGGAGGMGGTGGSGGGFGGTGGHGGLLYGNGGAGGAGATGQTGGSGGWAALWGRGGAGG 271 GDG G SG GG G G + G+G + GG G WG G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 272 AGGDNGGFAGGDGGHGGL 289 GG NG GG G G L Sbjct: 64 NGGGNGNSGGGSGTGGNL 81
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.2 bits (130), Expect = 3e-11 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 19 RRLRYRDRRGEILDAVMAHLLEHGISGMSFRTLAAAAGVSHITLRHHFGTKDELLVEIFG 78 + ++ R ILD + + G+S S +A AAGV+ + HF K +L EI+ Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 79 -----VIGARVQIPDHFGADDVESLVRKMWQRWTEPQSDRRSRLVFEAYAH 124 + ++ F D + L + ++ R RL+ E H Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFH 115
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.8 bits (77), Expect = 3e-04 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 19/146 (13%) Query: 9 ECLNQAAGQLENIGTALGAAN-AAAAPPTTG-IAAAAGDEVSAAVASL-FAEHGQGFQHL 65 E + G + + A AA T+ A V+ A++ L F F+ Sbjct: 274 ELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLSFLSIADKFKR- 332 Query: 66 CGEAAAFHSRFVQALG------------GAGSAFAASEATNAAL--MSASAAAASAAAIP 111 + + RF + LG G+ A+ + L +S+ +AA+ ++ Sbjct: 333 ANKIEEYSQRF-KKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSLV 391 Query: 112 VPPLPPLPPIINELINWAFDVVNWAI 137 P+ L + +I+ + A+ Sbjct: 392 GAPVSALVGAVTGIISGILEASKQAM 417
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.3 bits (169), Expect = 1e-16 Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 5/147 (3%) Query: 17 RRRGDKQRQAILQAVRELLEERPFAELSVATISNRAGVARSGFYFYFDSKYSVLAQLMAE 76 ++ + RQ IL L ++ + S+ I+ AGV R Y++F K + +++ Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 77 AVEELEERTQYFAPRQPGESPQEFAKRM--VGSAAIVYTHNDPVMMACN--AARHTDIEI 132 + + E + + PG+ + + V + + +M ++ + Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 133 RDILDQQFDVVLRE-IVGVIDAEMRAG 158 + + + I + + A Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAK 152
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 93.6 bits (232), Expect = 1e-24 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 2/189 (1%) Query: 9 GKRCLVTGAASGIGRATALRLAEQGAELYLTDRDGDGLAQTVSAARALGAQVPEHRVLDI 68 GK +TGAA GIG A A LA QGA + D + + L + VS+ +A A+ E D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADV 66 Query: 69 SDYDEVAAFAADIHASHPSMDVVLNIAGISAWGTVDRLSHEHWSKMVAVNLMGPIHVIET 128 D + A I +D+++N+AG+ G + LS E W +VN G + + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 129 FVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKYGLRGLSEVLRFDLARHRIGVSVV 188 M+ R G +V V S V AAY++SK ++ L +LA + I ++V Sbjct: 127 VSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 189 VPGAVDTPL 197 PG+ +T + Sbjct: 186 SPGSTETDM 194
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.0 bits (176), Expect = 8e-18 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 14 ARQERGDAARNRELLLQAARRLVAKRGAEAVTTDDIAAEAGVGKGTLFRRFGSRAGLMMV 73 AR+ + +A R+ +L A RL +++G + + +IA AGV +G ++ F ++ L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 74 LLDEDERASQQAF--LFGPPPLGPEAAPLDRLIAFGRERICFVHAHHELLSEANRNPLTR 131 + + E + P P + + LI LL E + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLES--TVTEERRRLLMEIIFHKCEF 119 Query: 132 YGAAASVHRR 141 G A V + Sbjct: 120 VGEMAVVQQA 129
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 5e-09 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 23 RWREHRKKVRNEIVEAAFRAIDRLGPE-LSVREIAEEAGTAKPKIYRHFTDKSDLFVAIG 81 + ++ ++ R I++ A R + G S+ EIA+ AG + IY HF DKSDLF I Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 82 ERLRDMLWTSIFPSINLATDSAREVIRRSVEEYVSLVDKHPNVLRVFI 129 E + V+R + + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLME 111
>cloacin#Cloacin signature. Length = 551 Score = 45.1 bits (106), Expect = 3e-06 Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 5/111 (4%) Query: 1540 GSGGSGGNGGAGGSGGTTGTGGAGGGGGNGGNGGTGFSTNNVASGGMGGGGGKGGGGGDG 1599 G G G N GA + G G G G G G + G+G+S+ N GG G G GGG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1600 LIGGAGGGGGDGGNGAAGLTSGGNGGAGG-----AGGAGGAGRTTSGDGGS 1645 GG G G G L++ A G GAGG + S S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 36.6 bits (84), Expect = 0.001 Identities = 34/109 (31%), Positives = 42/109 (38%) Query: 333 GGGGVGGTGGAGGAAGLIGRGGDGGGGGAGDGGSTGGAGQTGGDGGRAGDGGVGGRGGWL 392 GG G G GA +G I G G G G G +G + + GG +G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 393 AGAGGDGGAGGVGGVGGAGGGGADGLVLGGDGGDGGDGGTGGAGGSGGA 441 GG+G +GG G GG A + G G S GA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 36.2 bits (83), Expect = 0.001 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Query: 1485 GAGGNGLDGTAKAAGGN--GGNGGVGGAGGVAGGAG-GAGGAGGAGGNGPGGLFGPDGGS 1541 G G G + A + GN GG G+G GG + G+G + GG+G G +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1542 GGSGGNGGAGGSGGTTGTGGA 1562 G GGNG +GG GT G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 35.1 bits (80), Expect = 0.003 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 1142 GDGGRGGNGAATASGNGGDGGNGGDPGVGGAGGKGGIGETIGLSGLGGYNPTSGGNGGDG 1201 GDG GA + SGN G G G G + G G E G G GG G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 1202 GDGGSGSDGDFNHLAGSDGGNGGHGGSGGAFG 1233 GG+G+ G + GGN + AFG Sbjct: 64 NGGGNGNSGGGS----GTGGNLSAVAAPVAFG 91 Score = 34.7 bits (79), Expect = 0.004 Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Query: 431 GTGGAGGSGGAGGAGGLISLFGGQGAGGAGGAGGAGGLAGDGGVGAAGTFAGGGSGTGGA 490 G G G + GA G I+ GG G G GG + G + GGGSG+G Sbjct: 3 GGDGRGHNTGAHSTSGNIN-------GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 491 GGDGGTPGVGGAGGAGGAGSVAGAHGSEGARPLS 524 G G G GG G G GS G + S A P++ Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 34.7 bits (79), Expect = 0.004 Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 542 IAGDGGVGGNGGVFGNGGSGGAGGTGVAGQRGVSADTAGGSGTAGEDGGVGGDGGAGGLG 601 ++G G G N G G+ G TG+ GV + GSG + E+ GG G+G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGL----GVGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 602 GALAGHGGDGGAGGIGGAGGDGGSGAAGAA 631 G +GHG GG G GG G GG+ +A AA Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 34.7 bits (79), Expect = 0.004 Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 996 GNGGAYGNGGAGGDGGDGVNGTRGLTAIAPGGSGTDGGAGSAGGAGGYGGNGGALAGDGG 1055 G G N GA G+ +NG + G S G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGN-INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1056 DGGDGGNGGSGGDGGSGANGGAGTNGTTTGIPDGGRGGDGG 1096 G GGNG SGG G+G N A G P G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.3 bits (78), Expect = 0.005 Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 375 GDGGRAGDGGVGGRGGWLAGAGGDGGAGGVGGVGGAGGGGADGLVLGGDGGDGGDGGTGG 434 G GR + G G + G G GG G G+G + GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 435 AGGSGGAGGAGGLISLFGGQGAGGAGGAGGAGGLAGDGGVGAAGTFAGG 483 G GG G +GG G A A A G L+ G G A + + G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 34.3 bits (78), Expect = 0.005 Identities = 33/104 (31%), Positives = 41/104 (39%) Query: 1585 GMGGGGGKGGGGGDGLIGGAGGGGGDGGNGAAGLTSGGNGGAGGAGGAGGAGRTTSGDGG 1644 G G G +G G G GGG + GG G+G G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 1645 SGGNGGTGGEGGGDILVAPVVAGTGGAGGEGGAGGYSNTVGGVA 1688 +G +GG G GG VA VA A GAGG + ++ A Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 34.3 bits (78), Expect = 0.006 Identities = 33/88 (37%), Positives = 37/88 (42%), Gaps = 3/88 (3%) Query: 1065 SGGDGGSGANGGAGTNGTTTGIPDGGRGGDGGHGGHGGDGGAGGHGGVAGKAQAAGYTDG 1124 SGGDG G T+G G P G G G G G GG +G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG---G 58 Query: 1125 THGAGGVGGNGGAGGLAGDGGRGGNGAA 1152 G G GGNG +GG +G GG AA Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.008 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 4/85 (4%) Query: 781 GGDGGAGGDGVTGSQGLTATTPGGSGTNGGAGSAGGAGGS----GGLGGTLAGHGGDGGA 836 GGDG G + G P G G GGA G GG G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 837 GGAGGDGGFGGSGATGSSGDQGSAA 861 G GG+G GG TG + +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 33.5 bits (76), Expect = 0.010 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 295 AGGQGVGLDGGAGGGGGQGGLVYGGGGDGGAGGVGGEVGGGGVGGTGGAGGAAGLIGRGG 354 +GG G G + GA G + GG G GG + G GG+ I GG Sbjct: 2 SGGDGRGHNTGAHSTSGN---INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 355 DGGGGGAGDGGSTGGAGQTGGDG 377 G G G G++GG TGG+ Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 33.5 bits (76), Expect = 0.010 Identities = 26/79 (32%), Positives = 29/79 (36%) Query: 1263 GGAGGAGGDGGYLAGNGGTGGTGGAGGAGGTGAAGEPQFENGQNGGAGGIGRAGGAGGDG 1322 GG G G + GG G G GG EN GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1323 GNGGHAHAAGFQNGAGGAG 1341 GNGG +G +G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 33.1 bits (75), Expect = 0.010 Identities = 36/110 (32%), Positives = 39/110 (35%), Gaps = 3/110 (2%) Query: 260 GGGGDGGTGGVGAVSGGVGGGAGRAWLWGAGGAGGAGGQGVGLDGGAGGGGGQGGLVYGG 319 GG G G G + SG + GG G GG G + GGG G G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGL---GVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 320 GGDGGAGGVGGEVGGGGVGGTGGAGGAAGLIGRGGDGGGGGAGDGGSTGG 369 G G GG G GG G GG A A G G G S Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 33.1 bits (75), Expect = 0.013 Identities = 30/102 (29%), Positives = 36/102 (35%) Query: 1317 GAGGDGGNGGHAHAAGFQNGAGGAGGDGGQGGTGGGGGFGGDGKAGYNQRAGGDGGAGGD 1376 G G G N G +G NG G GG G G + G + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1377 GGFGGTGGTGGLNGDGTTRATSGANGIRGDGGSGGTGGNGLG 1418 G GG G +GG +G G + A G G GL Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.013 Identities = 25/83 (30%), Positives = 32/83 (38%) Query: 813 SAGGAGGSGGLGGTLAGHGGDGGAGGAGGDGGFGGSGATGSSGDQGSAANPNGGRGGDGG 872 S G G + +G+ G G G G GSG + + G + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 873 SGADGGAGGTGGDGGAGGQAQAA 895 G GG G +GG G GG A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.8 bits (74), Expect = 0.014 Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 1/111 (0%) Query: 1032 GGAGSAGGAGGYGGNGGALAGDGGDGGDGGNGGSGGDGGSGANGGAGTNGTTTGIPDGGR 1091 GG G G + +G G G G GG G G G+ G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1092 GGDGGHGGHGGDGGAGGHGGVAGKAQAAGYTD-GTHGAGGVGGNGGAGGLA 1141 G GG+G GG G GG+ A G+ T GAGG+ + AG L+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 32.8 bits (74), Expect = 0.015 Identities = 27/89 (30%), Positives = 33/89 (37%) Query: 1201 GGDGGSGSDGDFNHLAGSDGGNGGHGGSGGAFGNGGNGGDGGTGGDGSRAFQPEIAGGAA 1260 GGDG + G + +GG G G GGA G + G GS + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1261 GHGGAGGAGGDGGYLAGNGGTGGTGGAGG 1289 G+GG G G G GN A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.8 bits (74), Expect = 0.017 Identities = 39/121 (32%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 128 GADGVAGTGQAGGAGGLLWGNGGSGGSGGVGQSGGAGGSAGLIGRGGAGGAGGFSGGSGA 187 G DG A G + G G GG G S GG+G + GGSG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 188 GGAGGVGGNGGWLWGAGGDGGAGGVGAVSGGVGGGAGRAWLWGAGGAGGAGGQGVGLDGG 247 G GG G +GG G G G + AV+ V G + A GAGG V + G Sbjct: 63 GNGGGNGNSGG------GSGTGGNLSAVAAPVAFG------FPALSTPGAGGLAVSISAG 110 Query: 248 A 248 A Sbjct: 111 A 111 Score = 32.4 bits (73), Expect = 0.022 Identities = 34/109 (31%), Positives = 40/109 (36%), Gaps = 4/109 (3%) Query: 202 GAGGDGGAGGVGAVSGGVGGGAGRAWLWGAGGAGGAGGQGVGLDGGAGGGGGQGGLVYGG 261 G G G G + SG + GG + G G GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 262 GGDGGTGGVGAVSGGVGGG----AGRAWLWGAGGAGGAGGQGVGLDGGA 306 G GG G G SG G A A+ + A GAGG V + GA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.0 bits (72), Expect = 0.025 Identities = 28/103 (27%), Positives = 35/103 (33%) Query: 1620 SGGNGGAGGAGGAGGAGRTTSGDGGSGGNGGTGGEGGGDILVAPVVAGTGGAGGEGGAGG 1679 SGG+G G +G G G G GG G P G+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1680 YSNTVGGVAGNGGAGGSGGTGGTLAAHKVVYTSSGRGGVGGTG 1722 + N G GG+G G A + + G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.028 Identities = 36/102 (35%), Positives = 41/102 (40%), Gaps = 4/102 (3%) Query: 1427 GHGGKGGVGGYGSVGGV--GGSGGHGGNGGQSGTPRFGG-HGGDGGAGGAGVVTGGTGGT 1483 G G+G G S G GG G G GG S + + GG G+G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1484 GGAGGNGLDGTAKAAGGNGGNGGVGGAGGV-AGGAGGAGGAG 1524 G GGNG G GGN A G A GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.028 Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 3/105 (2%) Query: 359 GGAGDGGSTGGAGQTGGDGGRAGDGGVGGRGGWLAGAGGDGGAGGVGGVGGAGGGGADGL 418 GG G G +TG +G G GVGG +G + G G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG- 61 Query: 419 VLGGDGGDGGDGGTGGAGGSGGAGGAGGLISLFGGQGAGGAGGAG 463 G+GG G+ G G G + A + F GAGG Sbjct: 62 --HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.031 Identities = 22/79 (27%), Positives = 29/79 (36%) Query: 846 GGSGATGSSGDQGSAANPNGGRGGDGGSGADGGAGGTGGDGGAGGQAQAAGYADGTRGAG 905 GG G ++G ++ N NGG G G G G + G +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 906 GNGGAGGSGGLAGDGGRGG 924 GNGG G+ G G Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 31.6 bits (71), Expect = 0.032 Identities = 37/121 (30%), Positives = 41/121 (33%), Gaps = 5/121 (4%) Query: 1407 GGSGGTGGNGLGGRTENGDGGHGGKGGVGGYGSVGGVGGSGGHGGNGGQSGTPRFGGHGG 1466 GG G G + N +GG G G GG G G G SG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1467 DGGAGGAGVVTGGTGGTGGAGGNGLDGTAKAAGGNGGNGGVGGAGGVAGGAGGAGGAGGA 1526 G G G +GG G GGN A A G G G + GA A A Sbjct: 63 GNGGGN-----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Query: 1527 G 1527 Sbjct: 118 D 118 Score = 31.6 bits (71), Expect = 0.032 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Query: 658 GSGGNGGAGGQAQAAGYADGVRGAGGSGGAGGAGGLAGAGGAGGDAYTTGGGAGGDGGHG 717 G G G G +G +G G G G GG + G + GGG+G G Sbjct: 3 GGDGRGHNTGAHSTSGNING-----GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 718 GDTGAGGAGGSGGVGSSTGLTG 739 G +G G GG+G G +G G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGG 79 Score = 31.6 bits (71), Expect = 0.033 Identities = 24/79 (30%), Positives = 31/79 (39%) Query: 656 AGGSGGNGGAGGQAQAAGYADGVRGAGGSGGAGGAGGLAGAGGAGGDAYTTGGGAGGDGG 715 +GG G G + + G G G GGA G + G +G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 716 HGGDTGAGGAGGSGGVGSS 734 HG G G +GG G G + Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 31.6 bits (71), Expect = 0.037 Identities = 31/100 (31%), Positives = 38/100 (38%) Query: 1602 GGAGGGGGDGGNGAAGLTSGGNGGAGGAGGAGGAGRTTSGDGGSGGNGGTGGEGGGDILV 1661 GG G G G + +G +GG G G GGA +S + GG G+G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1662 APVVAGTGGAGGEGGAGGYSNTVGGVAGNGGAGGSGGTGG 1701 GG G G S VA A + G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.2 bits (70), Expect = 0.048 Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 1415 NGLGGRTENGDGGHGGKGGVGGYGSVGGVGGSGGHGGNGGQSGTPRFGGHGGDGGAGGAG 1474 +G GR N G H G + G + GVGG G P GG G GG Sbjct: 2 SGGDGRGHNT-GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1475 VVTGGTGGTGGAGGNGLDGTAKAA 1498 G G GG+G G A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAV 84
>PF04183#IucA / IucC family Length = 580 Score = 27.2 bits (60), Expect = 0.048 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 42 SPRRWQRAVVVVVVAVGLFA------AVIAGWALRSGLSAAALLQPAAWSQAIPDIGHLQ 95 +P RW + V+ L + + RSGL A L + + + HL Sbjct: 354 NPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLT-QLFRVVVVPLYHLL 412 Query: 96 LAHG 99 +G Sbjct: 413 CRYG 416
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 9e-05 Identities = 35/111 (31%), Positives = 45/111 (40%) Query: 256 LAGLFGSGGGNGGNGGFGSVNGGAGGDGGDGGALAGPGGSGGSGAFGGTLGGDGGAGGAA 315 ++G G G G + G++NGG G G GGA G G S + +GG G GG + Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 316 GLLFGPGGSGGAGGATFSGTGGVGGAGGHAGLFGDGGAGAVGGFSSVDGGA 366 G G G GG+ G A G GA G S+ GA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 37.8 bits (87), Expect = 2e-04 Identities = 32/113 (28%), Positives = 44/113 (38%) Query: 373 AGWFGNGGIGGAGGAGYFSSGGVGGGGGTGGVLFGNGGAGGNGGTASTGGAGGGGGAGVL 432 +G G G GA +GG G G GG G+G + N G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 433 IGNGGNAGIGGAGVTVGGTGVGGTSGLLLGLDGFNAPASASPIHALQQQALTA 485 GNGG G G G GG + + G + P + ++ AL+A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114 Score = 37.0 bits (85), Expect = 3e-04 Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 10/114 (8%) Query: 670 LGGAGGAGGTGGYSDDAPSSNGGAGGNAGLLFGNGGHGGSGGASRGFAGTGGAGGNAGLL 729 + G G G G + + NGG G G G GSG +S GG+G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGV---GGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 730 FGSGGFGGFGGFGSGGGSGGNGGNAGL-------FGSGGDGGAGGFGVFIDGGS 776 GSG G G SGGGSG G + + F + GAGG V I G+ Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.1 bits (80), Expect = 0.001 Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 551 TGGAGGTSTGGLGGAGGE--GGAGGFLAGTGGAGGAGGFSPATGTGAGGVGGAGGAGGLF 608 +GG G G G GG G G G + G+G S G G G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 609 GGGGGGGVGGGSLAGPGGGGGAGGAGGPLSGLVGAGGGAGG 649 G GGG G +G GG A A + GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.9 bits (77), Expect = 0.003 Identities = 34/98 (34%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 547 GTGGTGGAGGTSTGGLGGAGGEGGAGGFLAGTGGAG----GAGGFSPATGTGAGGVGGAG 602 G G GA TS GG G G GG G+G + GG G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 603 GAGGLFGGGGGGGVGGGSLAGPGGGG----GAGGAGGP 636 G G GGG G G ++A P G GAGG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 33.5 bits (76), Expect = 0.004 Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 593 TGAGGVGGAGGAGGLFGGGGGGGVGGGSLAGPGGGGGAGGAGGPLSGLVGAGGGAGGHGG 652 +G G G GA G GG G G G G G P G G+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 653 PGDTDGGDGGAGGNGGLLGGAGGAG 677 G+GG GN G G GG Sbjct: 62 -----HGNGGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.008 Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 6/92 (6%) Query: 743 SGGGSGGNGGNAGLFGSGGDGGAGGFGVFIDGGSGGSGGSGGPLLGTGGSGGAGGECDLG 802 SGG G+ A +GG G GV G G S GSG GG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGV----GGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 803 GFGDGGDGGDGGGAMLIGNGGNGGNGAAGATA 834 G G+GG G + G G GGN +A A Sbjct: 58 GGSGHGNGGGNGNSG--GGSGTGGNLSAVAAP 87 Score = 32.4 bits (73), Expect = 0.008 Identities = 42/106 (39%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Query: 324 SGGAGGATFSGTGGVGGA--GGHAGLFGDGGAGAVGGFSSVDG-GAGGAGGDAGWFGNGG 380 SGG G +G G GG GL GGA G+SS + GG+G W G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 381 IGGAGGAGYFSSGGVGGGGGTGGVLFGNGGAGGNGGTA-STGGAGG 425 G GG +G GGG GTGG L G A ST GAGG Sbjct: 62 HGNGGG-----NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.009 Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 575 LAGTGGAGGAGGFSPATGTGAGGVGGAGGAGGLFGGGGGGGVGGGSLAGPGGGGGAGGAG 634 ++G G G G +G GG G G GGG G G S P GGG G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGV-----GGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 635 GPLSGLVGAGGGAGGHGGPGDTDGG 659 G GGG G GG T G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 32.0 bits (72), Expect = 0.012 Identities = 32/110 (29%), Positives = 38/110 (34%), Gaps = 2/110 (1%) Query: 228 GAGGLGGTGGASGMDTGGDGGAGGAGGLLAGLFGSGGGNGGNGGFGSVNGGAGGDGGDGG 287 G G G GA +GG G G GSG + N G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 288 ALAGPGGSGGSGAFGGTLGGDGGAGGAAGLLFGPGGSGGAGGATFSGTGG 337 G G+ G G+ GT G F + GAGG S + G Sbjct: 63 GNGGGNGNSGGGS--GTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.6 bits (71), Expect = 0.013 Identities = 31/119 (26%), Positives = 41/119 (34%), Gaps = 1/119 (0%) Query: 201 TGGAGGYSNFLTASGGVGGTGGTGGLFGAGGLGGTGGASGMDTGGDGGAGGAGGLLAGLF 260 +GG G N S GG GL GG G S + GG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 261 GSGGGNGGNGGFGSVNGGAGGDGGDGGALAGPG-GSGGSGAFGGTLGGDGGAGGAAGLL 318 GG GN G GS GG A P + G+G ++ + A ++ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIM 120 Score = 31.6 bits (71), Expect = 0.014 Identities = 45/133 (33%), Positives = 52/133 (39%), Gaps = 11/133 (8%) Query: 148 SGAAGSGQNGGAGGAAGLF--GSGGAGGTGGSS-----STGNGGAGGAGGAGGLLLGNAG 200 SG G G N GA +G G G G GG+S S+ N GG G+G G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 201 TGGAGGYSNFLTASGGVGGTGGTGGLFGAGGLGGTGGASGMDTGGDGGAGGAGGLLAGLF 260 G GG N SGG GTGG A G S GG + AG L A + Sbjct: 62 HGNGGGNGN----SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Query: 261 GSGGGNGGNGGFG 273 G FG Sbjct: 118 DIMAALKGPFKFG 130 Score = 31.2 bits (70), Expect = 0.018 Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 349 GDGGAGAVGGFSSVDGGAGGAGGDAGWFGNGGIGGAGGAGYFSSGGV-GGGGGTGGVLFG 407 G G G G S G G G G G + G+G+ S GGG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG----VGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 408 NGGAGGNGGTASTGGAGGGGGAG 430 G G GG ++GG G GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 31.2 bits (70), Expect = 0.019 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 717 AGTGGAGGNAGLLFGSGGF-GGFGGFGSGGGSGGNGGNAGLFGSGGDGGAGGFGVFIDGG 775 +G G G N G SG GG G G GGG+ G + G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 776 SGGSGGSGGPLLGTGGSGG 794 G GG+G G+G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 31.2 bits (70), Expect = 0.021 Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 621 LAGPGGGGGAGGAGGPLSGLVGAGGGAGGHGGPGDTDGGDGGAGGNGGLLGGAGGAGGTG 680 ++G G G GA + G G G GG D G GG G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 681 GYSDDAPSSNGGAGGNAGLLFGNGGHGGSGGASRGFA----GTGGAGGNA 726 G NGG GN+G G GG+ + A F T GAGG A Sbjct: 61 G------HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.8 bits (69), Expect = 0.029 Identities = 22/75 (29%), Positives = 25/75 (33%) Query: 114 TGRPLIGNGANGTPGTGADGAAGGWLLGNGGAGGSGAAGSGQNGGAGGAAGLFGSGGAGG 173 TG NG P G G GSG GG +G GG G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 174 TGGSSSTGNGGAGGA 188 +GG S TG + A Sbjct: 71 SGGGSGTGGNLSAVA 85 Score = 30.1 bits (67), Expect = 0.045 Identities = 33/120 (27%), Positives = 40/120 (33%) Query: 522 DGGAGGSAPLFTAQDAGAGGAAGLWGTGGTGGAGGTSTGGLGGAGGEGGAGGFLAGTGGA 581 +GG G A D + GG+G G G GG G G +GTGG Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 582 GGAGGFSPATGTGAGGVGGAGGAGGLFGGGGGGGVGGGSLAGPGGGGGAGGAGGPLSGLV 641 A A G A GAGG G +A G G G L G++ Sbjct: 81 LSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGPFKFGLWGVALYGVL 140
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 2e-04 Identities = 30/81 (37%), Positives = 36/81 (44%) Query: 274 GAGGTGGAGGAGGTGGDGLAATTAGGTGGNAGDGGGGGTGGNAGDGGAGGQGGLFGNAGT 333 G G G GA T G+ T G GG A DG G + N GG+G G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 334 TGAGGDGGNGGNGGLAGNGGA 354 GG+G +GG G GN A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 37.0 bits (85), Expect = 5e-04 Identities = 35/99 (35%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 893 GGDGRNGSTGAIGGNGGTGGTGGIGGTAGTGGTGGSAGSAGTGGTGGNGGAGDSGASGGT 952 GGDGR +TGA +G I G G GG A + N G SG+ Sbjct: 3 GGDGRGHNTGA------HSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 953 GGTGGEGGAGIGGKDGGTGGTGGTGGTGGAGVVSGLSAF 991 GG G G G G GG GTGG A V G A Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPAL 95 Score = 36.2 bits (83), Expect = 9e-04 Identities = 32/102 (31%), Positives = 37/102 (36%) Query: 308 GGGGTGGNAGDGGAGGQGGLFGNAGTTGAGGDGGNGGNGGLAGNGGAGGNGDASNPNGGT 367 GG G G N G G G G G+G + GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 368 GGNGANPGAGGAGGAGGNGSRTGAPGTTGNTPTTAAGHGGKG 409 G G N +GG G GGN S AP G + G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.5 bits (81), Expect = 0.001 Identities = 29/80 (36%), Positives = 35/80 (43%) Query: 859 AGGTGGNGGTGGNSGPGGTNGTGGHGGNGGTGGDGGDGRNGSTGAIGGNGGTGGTGGIGG 918 +GG G TG +S G NG G GG DG + + GG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 919 TAGTGGTGGSAGSAGTGGTG 938 GG G S G +GTGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 0.002 Identities = 30/97 (30%), Positives = 36/97 (37%) Query: 507 GAGGNAGAGGLSGTGDSTGNAGTGGNGGAGGNGGTGGDGSDGGPGGAGGKGGNSGPGGTN 566 G G G T + TG G G + G+G + GG G G + G G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 567 GTGGHGGNGGTGGDGGDGASGVGLGKAGGTGATGGNG 603 G GG GN G G G S V A G A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 34.7 bits (79), Expect = 0.003 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 756 AGGTGGAGGTGGNSGPGGTNGTGGHGGNGGTGGDGGDGASGVGQGKAGGTGATGGSGGNA 815 +GG G TG +S G NG G GG G G G S GG+G+ GG + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 816 GSGGAAGTGGNGGTNGNAGTG 836 G G G G +GG +G G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.005 Identities = 32/102 (31%), Positives = 39/102 (38%) Query: 819 GAAGTGGNGGTNGNAGTGGTGGTGGNGGDGDKGAVGDSGFAGGTGGNGGTGGNSGPGGTN 878 G G G N G + +G G TG G G G S GG G+G + G G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 879 GTGGHGGNGGTGGDGGDGRNGSTGAIGGNGGTGGTGGIGGTA 920 G GG GN G G G + + T G GG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.5 bits (76), Expect = 0.005 Identities = 32/97 (32%), Positives = 38/97 (39%) Query: 610 GAAGTGGTGGTNGSAGTGGTGGTGGNGGAGDKGAVGDSGFAGGTGGAGGTGGNSGPGGTN 669 G G G G + ++G G TG G G G S GG G+G + G G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 670 GTGGHGGNGGTGGDGGDGASGVGQGKAGGTGATGGNG 706 G GG GN G G G S V A G A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 33.5 bits (76), Expect = 0.006 Identities = 25/73 (34%), Positives = 32/73 (43%) Query: 1110 GNAGNAGDGGNGGQGGTGGQGAAAPSAAKAAGNGGAGGVGGDGGNGADASGGGNGGDGGK 1169 A + NGG G G G A+ + ++ N GG G G + SG GNGG G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 1170 SGGGGTGGTGGKS 1182 SGGG G + Sbjct: 71 SGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.006 Identities = 33/105 (31%), Positives = 37/105 (35%), Gaps = 5/105 (4%) Query: 381 GAGGNGSRTGAPGTTGNTPTTAAGHGGKGGDGFSPATSGQDGGSGGKGGDAGRFGNGGNG 440 G G G TGA T+GN G G GG S ++ GG G +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 441 GNGGNGAAGDAAGSGHTGGNGGAGGGGGNAGQFGEPGTGGSGGNG 485 GNGG SG G GG FG P G G Sbjct: 63 GNGGGN-----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.1 bits (75), Expect = 0.007 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 548 GGPGGAGGKGGNSGPGGTNGTGGHGGNGGTGGDGGDGASGVGLGKAGGTGATGGNGGNAG 607 GG G G +S G NG G GG G G G S GG+G+ GG +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 608 SGGAAGTGGTGGTNGSAGTG 627 G G G +GG +G+ G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 32.8 bits (74), Expect = 0.009 Identities = 26/86 (30%), Positives = 36/86 (41%) Query: 527 AGTGGNGGAGGNGGTGGDGSDGGPGGAGGKGGNSGPGGTNGTGGHGGNGGTGGDGGDGAS 586 +G G G G T G+ + G G G G + G G ++ GG G+G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 587 GVGLGKAGGTGATGGNGGNAGSGGAA 612 G G +G G GGN + A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 32.8 bits (74), Expect = 0.010 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 650 AGGTGGAGGTGGNSGPGGTNGTGGHGGNGGTGGDGGDGASGVGQGKAGGTGATGGNGGNA 709 +GG G TG +S G NG G GG G G G S GG+G+ GG + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 710 GSGGAAGTGGDASGGGTNGS 729 G G G G G GT G+ Sbjct: 61 GHGNGGGNGNSGGGSGTGGN 80 Score = 32.8 bits (74), Expect = 0.010 Identities = 26/80 (32%), Positives = 35/80 (43%) Query: 403 AGHGGKGGDGFSPATSGQDGGSGGKGGDAGRFGNGGNGGNGGNGAAGDAAGSGHTGGNGG 462 +G G+G + + +TSG G G G +G + N G + H GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 463 AGGGGGNAGQFGEPGTGGSG 482 G GGGN G GTGG+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 32.8 bits (74), Expect = 0.012 Identities = 23/81 (28%), Positives = 32/81 (39%) Query: 480 GSGGNGGKGGDGAAGGLAQAGGNGGEGGAGGNAGAGGLSGTGDSTGNAGTGGNGGAGGNG 539 G G G G + G G G G G + G+G S G +G+G + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 540 GTGGDGSDGGPGGAGGKGGNS 560 G GG + G G G ++ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 32.4 bits (73), Expect = 0.012 Identities = 24/79 (30%), Positives = 29/79 (36%) Query: 757 GGTGGAGGTGGNSGPGGTNGTGGHGGNGGTGGDGGDGASGVGQGKAGGTGATGGSGGNAG 816 G GA T GN G T G G + G+G + G G G G G G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 817 SGGAAGTGGNGGTNGNAGT 835 +G + G G GG Sbjct: 68 NGNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.014 Identities = 26/83 (31%), Positives = 36/83 (43%) Query: 995 IGGAGGAGGQGGQATGGGNAGDGGTGGQGGTGGQGATSLFEASSGGTGGAGGAGGLGGQA 1054 + G G G G + GN G TG G G + ++ GG+G GG + Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1055 ADGGNAGDGGTGGQGGTGGQGAA 1077 G G+G +GG GTGG +A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSA 83 Score = 32.4 bits (73), Expect = 0.014 Identities = 32/84 (38%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 878 NGTGGHGGNGGTGGDGGDGRNGSTGAIGGNGGTGGTGGIGGTAGTGGTGGSAGSAGTGGT 937 +G G G N G G+ G TG G G + G+G GG GS G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 938 GGNGGAGDSGASGGTGGTGGEGGA 961 GNGG G SGG GTGG A Sbjct: 62 HGNGGGN--GNSGGGSGTGGNLSA 83 Score = 32.0 bits (72), Expect = 0.016 Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Query: 951 GTGGTGGEGGAGIGGKDGGTGGTGGTGGTGGAGVVSGLSAFPGGIGGAGGAGGQGGQATG 1010 G G G G TG G G + G+G S + + GG G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1011 GGNAGDGGTGGQGGTGGQGATSL-FEASSGGTGGAGGAG 1048 GGN GG G GG A + F + T GAGG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.016 Identities = 31/98 (31%), Positives = 38/98 (38%) Query: 715 AGTGGDASGGGTNGSAGTGGTGGTGGNGGDGDKGAVGDSGFAGGTGGAGGTGGNSGPGGT 774 +G G G + ++G G TG G G G S GG G+G + G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 775 NGTGGHGGNGGTGGDGGDGASGVGQGKAGGTGATGGSG 812 +G GG GN G G G S V A G A G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 32.0 bits (72), Expect = 0.018 Identities = 28/77 (36%), Positives = 33/77 (42%) Query: 692 GQGKAGGTGATGGNGGNAGSGGAAGTGGDASGGGTNGSAGTGGTGGTGGNGGDGDKGAVG 751 G G+ TGA +G G G GG AS G S GG+G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 752 DSGFAGGTGGAGGTGGN 768 + G G +GG GTGGN Sbjct: 64 NGGGNGNSGGGSGTGGN 80 Score = 31.6 bits (71), Expect = 0.021 Identities = 25/84 (29%), Positives = 30/84 (35%) Query: 470 AGQFGEPGTGGSGGNGGKGGDGAAGGLAQAGGNGGEGGAGGNAGAGGLSGTGDSTGNAGT 529 +G G G+ G G G G + G G + N GG SG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 530 GGNGGAGGNGGTGGDGSDGGPGGA 553 GNGG GN G G A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 31.6 bits (71), Expect = 0.023 Identities = 25/85 (29%), Positives = 33/85 (38%) Query: 1175 TGGTGGKSLGNLPSGDGGVGGNAGTGGNGGNATDGGAGGKGGDGAAGGTGGNAGEFQSLL 1234 +GG G S G + G G GG A+DG + GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1235 GIGKGGDGGTGGDGGNGGTGTPVGA 1259 GG+G +GG G GG + V A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 31.6 bits (71), Expect = 0.025 Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 667 GTNGTGGHGGNGGTGGD--GGDGASGVGQGKAGGTGATGGNGGNAGSGGAAGTGGDASGG 724 G +G G + G T G+ GG GVG G + G+G + N G G+ G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 725 GTNGSAGTGGTGGTGGNGGDGDKGAVGDSGFAGGTGGAGGTG 766 G G G G G G V A T GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.025 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 8/96 (8%) Query: 1041 TGGAGGAGGLGGQAADGGNAGDGGTGGQGGTGGQGAAGPTVNDTAGDGGAGGDGGVGGAG 1100 +GG G G + G G G GG G+ + N+ G G G GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1101 GQGGQATDGGNAGNAGDGGNGGQGGTGGQGAAAPSA 1136 GN G G+ G G G AAP A Sbjct: 62 --------HGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 31.2 bits (70), Expect = 0.028 Identities = 31/102 (30%), Positives = 37/102 (36%) Query: 220 HGGDGGTGGTGASGVAGANGGAGQTGLAGTDGGTGGVGGAGGKGGLLFGAGGEGGAGGTG 279 + G T G G G G G + +G GG G G G G G GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 280 GAGGAGGTGGDGLAATTAGGTGGNAGDGGGGGTGGNAGDGGA 321 +GG GTGG+ A G A G G + GA Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 31.2 bits (70), Expect = 0.033 Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 438 GNGGNGGNGAAGDAAGSGHTGGNGGAGGGGGNAGQ-FGEPGTGGSGGNGGKGGDGAAGGL 496 G G G N A +G+ + G G GGG + G + GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 497 AQAGGNGGEGGAGGNAGAGGLSGTGDSTGNAGTGGNGGAG 536 GGNG GG G G + G G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.2 bits (70), Expect = 0.034 Identities = 33/123 (26%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 934 TGGTGGNGGAGDSGASGGTGGTGGEGGAGIGGKDGGTGGTGGTGGTGGAGVVSGLSAFPG 993 +GG G G SG G G G G DG + GG+G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG------SGIH 55 Query: 994 GIGGAGGAGGQGGQATGGGNAGDGGTGGQGGTGGQGATSLFEASSGGTGGAGGAGGLGGQ 1053 GG+G G G +GGG+ G G +L +GG + AG L Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Query: 1054 AAD 1056 AD Sbjct: 116 IAD 118 Score = 30.8 bits (69), Expect = 0.038 Identities = 24/81 (29%), Positives = 31/81 (38%) Query: 1147 GVGGDGGNGADASGGGNGGDGGKSGGGGTGGTGGKSLGNLPSGDGGVGGNAGTGGNGGNA 1206 G G G N S GN G G G G + G + + GG G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1207 TDGGAGGKGGDGAAGGTGGNA 1227 +GG G G G+ G +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 30.8 bits (69), Expect = 0.042 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Query: 632 TGGNGGAGDKGAVGDSGFAGG--TGGAGGTGGNSGPGGTNGTGGHGGNGGTGGDGGDGAS 689 +GG+G + GA SG G TG G G + G G ++ GG G+G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 690 GVGQGKAGGTGATGGNGGNAGSGGAA 715 G G +G G GGN + A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 30.8 bits (69), Expect = 0.043 Identities = 24/79 (30%), Positives = 28/79 (35%) Query: 595 GTGATGGNGGNAGSGGAAGTGGTGGTNGSAGTGGTGGTGGNGGAGDKGAVGDSGFAGGTG 654 G G N G + G G TG G + G+G + N G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 655 GAGGTGGNSGPGGTNGTGG 673 G GG GNSG G G Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.043 Identities = 24/85 (28%), Positives = 29/85 (34%) Query: 790 GGDGASGVGQGKAGGTGATGGSGGNAGSGGAAGTGGNGGTNGNAGTGGTGGTGGNGGDGD 849 GGDG + GG G GGA+ G N G G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 850 KGAVGDSGFAGGTGGNGGTGGNSGP 874 G+ GG+G G + P Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87
>cloacin#Cloacin signature. Length = 551 Score = 39.3 bits (91), Expect = 5e-05 Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 5/90 (5%) Query: 624 GAGGQGGDGAQGGDGGAGVDTTTGAGGDGGAGAGGGTSGFLYGNGGAGGAGGHGGGGPGM 683 G G+G + G TG G GGA G G S GG G+G H GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 684 GGDGGDGGDGGRAQLIGNGGNGGAGGTAAP 713 G GG+G GG G+G G AAP Sbjct: 63 GNGGGNGNSGG-----GSGTGGNLSAVAAP 87 Score = 37.0 bits (85), Expect = 3e-04 Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 246 GSGGQGGNGGSAIETGN--GGAAGAGGTGGAGGHGGWLVGNGGIGGDGGSGGVGGDAGAY 303 G G+G N G+ +GN GG G G GGA GW N GG GSG G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 304 GPPANGGAGGHGGMGGVGGDA 324 G G G G G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 35.8 bits (82), Expect = 6e-04 Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 2/125 (1%) Query: 297 GGDAGAYGPPANGGAGG-HGGMGGVGGDAGLLFGSGGAGGVGGNGAIGGTGVMSGAGGAG 355 GGD + A+ +G +GG G+G G GSG + G G+G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 356 GDGGNGGYAQLIGDGGGGGAGGAGASGAGDGDPGTAGGDGLLLSSASAAPLYAVEQQVLG 415 G+GG G + GG + A G T G GL + S SA L A ++ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAV-SISAGALSAAIADIMA 121 Query: 416 AINAP 420 A+ P Sbjct: 122 ALKGP 126 Score = 35.1 bits (80), Expect = 0.001 Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 9/109 (8%) Query: 225 GAGGSGGSGGAARLFGN------GGAGGSGGQGGNGGSAIETGNGGAAGAG-GTGGAGGH 277 G G G + GA GN G G G G+G S+ GG +G+G GG GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 278 GGWLVGNGGIGGDGGSGGVGGDAG--AYGPPANGGAGGHGGMGGVGGDA 324 G GG G G + A A+G PA G G + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.1 bits (80), Expect = 0.001 Identities = 24/79 (30%), Positives = 29/79 (36%) Query: 612 GSGGVGGSAGLWGAGGQGGDGAQGGDGGAGVDTTTGAGGDGGAGAGGGTSGFLYGNGGAG 671 G G G + G G G G G G +G + GG SG +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 672 GAGGHGGGGPGMGGDGGDG 690 G GG G G G GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.002 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 200 GNGGAGGIGGTGGSGLDGPDSGAAGGAGGSGGSGGAARLFGNGGAGGSG-GQGGNGGSAI 258 G G G T G+ ++G +G G G S GSG ++ GG GSG GG G Sbjct: 6 GRGHNTGAHSTSGN-INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 259 ETGNGGAAGAGGTGGAG 275 GNG + G GTGG Sbjct: 65 GGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.007 Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 648 AGGDGGAGAGGGTSGFLYGNGGAGGAGGHGGGGPGMG-GDGGDGGDGGRAQLIGNGGNGG 706 +GGDG G S NGG G G GG G G + GG I GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 707 AGGTAAPGGTDGTSGAAGKG 726 G G + G SG G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.008 Identities = 30/109 (27%), Positives = 33/109 (30%), Gaps = 6/109 (5%) Query: 478 GAGGAGYSASGLPPAGIGAPGGAGGAGGSGGWLVGNGGAGGIGGIGASGSFGAPSGQGGN 537 G +S SG G G GGA GW N GG G G G+ G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 538 GGIGGAAGLFGQGGAGGNGGQGGGDDFALSAGAGGAGGAGGHGGQLYGD 586 G G G G A A GAGG + Sbjct: 68 NGNSGG------GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.0 bits (72), Expect = 0.010 Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 186 GGSGGVGGTGGWLYGNGGAGGIGGTGGSGLDGPDSGAAGGAGGSGGSGGAARLFGNGGAG 245 G + G T G + NGG G+G GG DG + G GGSG G G G Sbjct: 8 GHNTGAHSTSGNI--NGGPTGLGVGGG-ASDGSGWSSENNPWG-GGSGSGIHWGGGSGHG 63 Query: 246 GSGGQGGNGGSAIETGNGGAAGA 268 GG GN G TG +A A Sbjct: 64 NGGG-NGNSGGGSGTGGNLSAVA 85 Score = 30.8 bits (69), Expect = 0.023 Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 566 LSAGAGGAGGAGGHGGQLYGDGGGGGAGGVGGSVDIAESGVTGGRGGSGGVGGSAGLWGA 625 +S G G G H +GG G G GG+ D SG + GG GS WG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASD--GSGWSSENNPWGGGSGSGIHWGG 58 Query: 626 GGQGGDGAQGGDGGAGVDTTTGAGGDGGAGAGGGTSGF 663 G G+G G+ G G +G GG+ A A GF Sbjct: 59 GSGHGNGGGNGNSGGG----SGTGGNLSAVAAPVAFGF 92 Score = 30.5 bits (68), Expect = 0.030 Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Query: 513 NGGAGGIGGIGASGSFGAPSGQGGNGGIGGAAGLFGQGGAGGNGGQGGGDDFALSAGAGG 572 +GG G GA + G +G G+GG A G G + N GGG + G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGAS-DGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 573 AGGAGGHGGQLYGDGGGGGAGGVGGSV 599 G GG G GGG G GG +V Sbjct: 61 GHGNGGGNG---NSGGGSGTGGNLSAV 84 Score = 30.1 bits (67), Expect = 0.034 Identities = 39/120 (32%), Positives = 47/120 (39%), Gaps = 15/120 (12%) Query: 452 GGAGGTGTAAHPTGGS--GGSAGLIGNGGAG-GAGYSASGLPPAGIGAPGGAGGAGGSGG 508 G G T AH T G+ GG GL GGA G+G+S+ P GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNP------------WGGGSG 51 Query: 509 WLVGNGGAGGIGGIGASGSFGAPSGQGGNGGIGGAAGLFGQGGAGGNGGQGGGDDFALSA 568 + GG G G G +G+ G SG GGN A FG G G + A Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 30.1 bits (67), Expect = 0.035 Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 154 HPTGGSGGSAGLIGTGGAGGAGYGPAAQTGATGGSGGVGGTGGWLYGNGGAGGIGGTGGS 213 H TG S + G G G G + +G + + GG G GG G G GG+ Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 214 GLDGPDSGAAGGAGGSGGSGGAARLFGNGGAGGSGGQG 251 G +SG G GG+ + A FG G G Sbjct: 69 G----NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.1 bits (67), Expect = 0.040 Identities = 28/105 (26%), Positives = 36/105 (34%) Query: 134 GGDGGLLWGNGGAGGVGTAAHPTGGSGGSAGLIGTGGAGGAGYGPAAQTGATGGSGGVGG 193 G + G +G G T GG+ +G G G G G G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 194 TGGWLYGNGGAGGIGGTGGSGLDGPDSGAAGGAGGSGGSGGAARL 238 G G+G G + G + + GAGG S A L Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 7e-05 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 245 GAGGHGGTGGTSASGTGATGGSGGAGGLLFSPGGAGGDGGAGFSGADGGAGGNGGAGGLL 304 G G G G ++ GG G G G G G+G+S + GG G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV------GGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 305 FGTGGGGGEGGATSPSSSTGSGGDGGIGGTSGLFG--TGGTGGAGGAAANATGG 356 G G G GG + +G+GG+ FG T GAGG A + + G Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 35.5 bits (81), Expect = 7e-04 Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 339 GTGGTGGAGGAAANATGGNGGAGGGGLWFGNGGAGGIGGFDAHGNGGDGGAGGNAGIYGG 398 G G G GA + + NGG G G GGA G+ + N GG+G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG---VGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 399 NGGAGGTGGVGVGGNLFTGGQGGAGGNA---GLLAGNGGAGGNGGVRFSGNA 447 +G G G GG TGG A G A + G V S A Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.1 bits (80), Expect = 8e-04 Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 3/85 (3%) Query: 461 MFGNGGAGGAGGDRVAGSQGNGGDGGDGGHGGTYFGSGGAGGH---GGYDDSGSGGQGGH 517 M G G G G NGG G G GG GSG + + GG SG GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 518 GGDGGAAGTIGNGGDGGTGGDALVS 542 G G GG G G + V+ Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 34.7 bits (79), Expect = 0.001 Identities = 27/90 (30%), Positives = 35/90 (38%) Query: 279 AGGDGGAGFSGADGGAGGNGGAGGLLFGTGGGGGEGGATSPSSSTGSGGDGGIGGTSGLF 338 +GGDG +GA +G G L GG G +S ++ G G GI G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 339 GTGGTGGAGGAAANATGGNGGAGGGGLWFG 368 G G + TGGN A + FG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.9 bits (77), Expect = 0.002 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Query: 309 GGGGEGGATSPSSSTGSGGDGGIGGTSGLFGTGGTGGAGGAAANATGGNGGAGGGGLWFG 368 GG G G T S++G+ GG +GL GG G ++ GG+G G W G Sbjct: 3 GGDGRGHNTGAHSTSGNIN----GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 369 NGGAGGIGGFDAHGNGGDGGAGGNA 393 G G GG G G G +A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 32.8 bits (74), Expect = 0.004 Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 397 GGNGGAGGTGGVGVGGNLFTGGQGGAGGNAGLLAGNG--GAGGNGGVRFSGNAGAGGAGG 454 G N GA T G GG G GGA +G + N G G G+ + G +G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 455 TGGDAGMFGNGGAGGAGGDRVA 476 G G G GG A VA Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVA 89 Score = 31.6 bits (71), Expect = 0.009 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 8/81 (9%) Query: 509 SGSGGQGGHGGDGGAAGTIGNGGDGGTGGDALVSGGTGGD-------GGDGGDAREIGNG 561 SG G+G + G +G I NGG G G S G+G GG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 562 GNGGNAGAGATAGNEGTGGTG 582 G+G G G + G GTGG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 31.2 bits (70), Expect = 0.013 Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 217 IGGAGGEGGNSATTAGVGGA-GGAGGLLVGAGGHGGTGGTSASGTGATGGSGGAGGLLFS 275 + G G G N+ + G GG GL VG G G+G +S + GG G+G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN--NPWGGGSGSGIHWGG 58 Query: 276 PGGAGGDGGAGFSGADGGAGGNGGA 300 G G GG G SG G GGN A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 30.8 bits (69), Expect = 0.016 Identities = 23/86 (26%), Positives = 31/86 (36%) Query: 445 GNAGAGGAGGTGGDAGMFGNGGAGGAGGDRVAGSQGNGGDGGDGGHGGTYFGSGGAGGHG 504 G GA T G+ G G G +G G G G ++G G G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 505 GYDDSGSGGQGGHGGDGGAAGTIGNG 530 G + + GG G G A + G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 30.5 bits (68), Expect = 0.020 Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 4/107 (3%) Query: 320 SSSTGSGGDGGIGGTSGLFGTGGTGGAGGAAANATGGNGGAGGGGLWFGNGGAGGIGGFD 379 S G G + G TSG G TG G A+ G +G G GI Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNP---WGGGSGSGIHWGG 58 Query: 380 AHGNGGDGGAGGNAGIYGGNGGAGGTGGVGVGGNLFTGGQGGAGGNA 426 G+G GG GN+G G GG V GAGG A Sbjct: 59 GSGHGNGGG-NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.1 bits (67), Expect = 0.029 Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 5/85 (5%) Query: 125 GADGTAPGQAGGDGGLLYGNGGAGGPGGAGGNAGLIGNGGAGGSGAALGLFGGTGGNGGL 184 GA T+ GG GL G G + G G + N N GGSG+ + GG+G G Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSEN-----NPWGGGSGSGIHWGGGSGHGNGG 66 Query: 185 LFGNGGTGGAAGDLASGVGLPGGAG 209 GN G G G S V P G Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 29.7 bits (66), Expect = 0.039 Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 6/106 (5%) Query: 397 GGNGGAGGTGGVGVGGNLFTGGQGGAGGNAGLLAGNGGAGGNGGVRFSGNAGAGGAGGTG 456 GG+G TG GN+ GG G G G G+G + N +G GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 457 GDAGMFGNGGAGGAGGDRVAGSQGNGGDGGDGGHGGTYFGSGGAGG 502 GNGG G G G + GAGG Sbjct: 62 H-----GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 29.3 bits (65), Expect = 0.048 Identities = 23/61 (37%), Positives = 27/61 (44%) Query: 209 GGHAGLFGIGGAGGEGGNSATTAGVGGAGGAGGLLVGAGGHGGTGGTSASGTGATGGSGG 268 GG GL GGA G S+ GG G+G G GHG GG SG G+ G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 269 A 269 + Sbjct: 82 S 82
>cloacin#Cloacin signature. Length = 551 Score = 36.6 bits (84), Expect = 8e-04 Identities = 31/101 (30%), Positives = 38/101 (37%) Query: 516 SGGDGGAGGAGGAGGDGGLVAGNGGVGGAGGIGGVGGTGGDGSVGVDAAGAGQDGGVGGA 575 SGGDG G G + G G+G GG G + + +G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 576 GGAGGAGGAGGAGGEGGAGGHALAAGYADGSQGAGGAGGAG 616 G GG G G G G A+AA A G G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 35.1 bits (80), Expect = 0.002 Identities = 34/88 (38%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Query: 144 GSGGVGQAGGAGGAAGLIGSGGAGGAGGAGGTGGAGGAGGWLYGNGGAGGVGGAGAVGGA 203 G G G GA +G I GG G G GGA GW N GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNIN----GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 204 GGNTWLWGNGGAGGSGGVGSGSGGAGGS 231 G GNGG G+ G GSG+GG + Sbjct: 59 GSGH---GNGGGNGNSGGGSGTGGNLSA 83 Score = 33.9 bits (77), Expect = 0.006 Identities = 32/120 (26%), Positives = 46/120 (38%) Query: 425 GAGGAGGTGGSGAGGSRAATGATGSTPSSGGNGGAGGAGADSITTGGAGAAGGTGGDGGL 484 G G G G+ + G TG G + G+G + ++ GG+G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 485 VGDGGAGGDGGAGLGGAPGTSVIFPGGQPGSSGGDGGAGGAGGAGGDGGLVAGNGGVGGA 544 GG G GG G ++V P + GAGG + G L A + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Score = 33.5 bits (76), Expect = 0.006 Identities = 26/87 (29%), Positives = 31/87 (35%) Query: 551 GGTGGDGSVGVDAAGAGQDGGVGGAGGAGGAGGAGGAGGEGGAGGHALAAGYADGSQGAG 610 GG G + G + +GG G G GGA G E G +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 611 GAGGAGGIGGDGAAGGKGAEGAAAAGA 637 G GG G G G+ G AA A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 32.8 bits (74), Expect = 0.010 Identities = 23/86 (26%), Positives = 31/86 (36%) Query: 1026 GDGGAGGAGGAGGDGGAVAGDGGRGGAGGDGAMGGNGGNGFDGLHGTTPGANGQYGGDGG 1085 G G GA G+ G GG DG+ + N + G G+ G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1086 EGGRGGVGGAGGAGGAAAAGQAGSQG 1111 G GG+G G +A + G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.8 bits (74), Expect = 0.012 Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 4/115 (3%) Query: 1250 GHGGDGGDAGDSGSSAFGVGSPGGGGGQGGFGVAGGGDGGDGGNGGAGGFGQNGGPGGRG 1309 G G G + G +S G P G G GG G + GG G G + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1310 GGGGHSLVGPGGDGGLGGTGGNGGNGSQPPFGSTPAGSGGDGGNGGAGGSSGFVS 1364 G GG + G GG GTGGN + P PA S G S+G +S Sbjct: 63 GNGGGN----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 32.0 bits (72), Expect = 0.018 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 1094 GAGGAGGAAAAGQAGSQGDGGNGGDGGDGGTPGNGGSGADGANSAIGVSAGDGGYGGAGG 1153 G G G A +GG G G GG + GSG N+ G +G G + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1154 NAGAGGLGGEGGAGSTSGASG 1174 G GG G G GS +G + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.019 Identities = 25/79 (31%), Positives = 31/79 (39%) Query: 413 GTGGNGGNGGDPGAGGAGGTGGSGAGGSRAATGATGSTPSSGGNGGAGGAGADSITTGGA 472 G G G N G G G +G G A+ +G + + GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 473 GAAGGTGGDGGLVGDGGAG 491 G GG G GG G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 31.6 bits (71), Expect = 0.023 Identities = 29/69 (42%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 216 GGSGGVGSGSGGAGGSGGWLYGNGGAGGTGGVADGVGEGGGHGGAGGNARLLGTGGAGGD 275 GG G+G G G + GS GW N GG G G G GHG GGN G G GG+ Sbjct: 22 GGPTGLGVGGGASDGS-GWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 276 GGAGLAGAA 284 A A A Sbjct: 81 LSAVAAPVA 89 Score = 31.6 bits (71), Expect = 0.024 Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 872 GAGGAGGAGGLAQATGYLDGSHGSGGSGGAGGQAGNAGDGGDGADATVAGGKGGAGGNGG 931 G G G G +G ++G G GG G G+ + +G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 932 DAGVGGSGGLGGDSGNGTHAANGASAGAYGTGGNGGAGGDGADATAAGQAGGAGGAG 988 GG+G GG SG G + + A+ A+G G G + + A A A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 31.6 bits (71), Expect = 0.025 Identities = 27/89 (30%), Positives = 31/89 (34%) Query: 1147 GYGGAGGNAGAGGLGGEGGAGSTSGASGLDGSQAAGGDGGNGGFGGTGGLFEAAGSGGAG 1206 G G G N GA G G T G S +G N +GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1207 GVGGDGSQGGDGGDGGAGGSSPGATGGWG 1235 G GG G G G S+ A +G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 31.6 bits (71), Expect = 0.027 Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 4/112 (3%) Query: 1284 GGGDGGDGGNGGAGGFGQNGGPGGRGGGGGHSLVGPGGDGGLGGTGGNGGNGSQPPFGST 1343 G G G + G G NGGP G G GGG S G GG+GS +G Sbjct: 4 GDGRGHNTGAHSTSG-NINGGPTGLGVGGGAS---DGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 1344 PAGSGGDGGNGGAGGSSGFVSGQSGTDGQDGGDPSGQFGGTGGAGGSGGAGA 1395 G G GGS + + G P+ G GG S AGA Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 31.2 bits (70), Expect = 0.036 Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 1183 GDGGNGGFGGTGGLFEAAGSGGAGGVGGDGSQGGDGGDGGAGGSSPGATGGWGGQGGLGG 1242 G G N G T G G G G GG G + G G+ WGG G G Sbjct: 6 GRGHNTGAHSTSGNING-GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 1243 VGTAGVGGHGGDGGDAGDSGSSAFGVGSPG-GGGGQGGFGVAGGGD 1287 G G G G G + ++ G P G GG V+ Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 30.8 bits (69), Expect = 0.049 Identities = 31/101 (30%), Positives = 35/101 (34%), Gaps = 1/101 (0%) Query: 1088 GRGGVGGAGGAGGAAAAGQAGSQGDGGNGGDGGDGGTPGNGGSGADGANSAIGVSAGDGG 1147 G G G GA + G G G GG G G+ S I G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH-WGGGSG 61 Query: 1148 YGGAGGNAGAGGLGGEGGAGSTSGASGLDGSQAAGGDGGNG 1188 +G GGN +GG G GG S A G A G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102
>PERTACTIN#Pertactin signature. Length = 922 Score = 27.4 bits (60), Expect = 0.036 Identities = 16/49 (32%), Positives = 22/49 (44%) Query: 56 HIATLIGYTRGDGGFQWENAMGDLAIGVVGIMAYWFRGHFWLATIVVLS 104 H+ L GYTRGD GF + ++ V G Y F+L + S Sbjct: 703 HLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYATYIANSGFYLDATLRAS 751
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 5e-04 Identities = 29/91 (31%), Positives = 37/91 (40%) Query: 332 VSGAAGSGGHGGTGGAAGLWGVGGHGGDGAHGGAGASGGAGDAGSGGGDAGDGGAGGRGG 391 +SG G G + G +G G G G + SG + + GG +G G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 392 WLVGGGGAGGSAGSGGGGGAGGSGANAVTLG 422 GGG G S G G GG + A V G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 37.0 bits (85), Expect = 5e-04 Identities = 39/109 (35%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 999 GNGGKGGNGGAGG-----NGAAGSNASGAGATGGTGLMGGTGGSGGAGGEGGALAGNGGQ 1053 G G+G N GA NG G GA+ G+G GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1054 GGSGGSGGIGGTGGQGGGGSAGGAGVA-GVQDGAGGAGGGGGLGGSGGA 1101 G GG+G GG G GG SA A VA G + GG + S GA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 36.2 bits (83), Expect = 0.001 Identities = 29/86 (33%), Positives = 36/86 (41%) Query: 1169 GGGGTGGAGGAGGTSGDGVTVAGAGPTGGTGAGGAGGNGGAGGNADGGGIVNPEYGDGGA 1228 GG G G GA TSG+ GG + G+G + G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1229 GGNGGNGSSGGDGGSGGTGGRSGAGI 1254 G GGNG+SGG G+GG A + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 35.8 bits (82), Expect = 0.001 Identities = 33/99 (33%), Positives = 36/99 (36%) Query: 1033 GTGGSGGAGGEGGALAGNGGQGGSGGSGGIGGTGGQGGGGSAGGAGVAGVQDGAGGAGGG 1092 G G + GA G + G G GG G GG+G G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1093 GGLGGSGGAGGAGGVGGIGGQAHAGGAFHDGDAGAGGLG 1131 GG G SGG G GG A G GAGGL Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.1 bits (80), Expect = 0.002 Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 432 GDGGAGGVGGAGGRGGWISFLSGQGAGGAGGDGGAGGGAGN---GGDGAVGTFFGGTGAG 488 G G G GA G I+ G G G+G + N GG G +GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 489 GNGGHGGDPGSGGAGGAGGAGSSAGAAGAGGL 520 GNGG G SGG G GG S+ A A G Sbjct: 63 GNGGGNG--NSGGGSGTGGNLSAVAAPVAFGF 92 Score = 34.7 bits (79), Expect = 0.003 Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 4/103 (3%) Query: 806 TGGDGSTGGTGGTGGAGGSGGAMAGKGGDGGAG---GMGGGGGVGGNGSNGDHGVSGGNV 862 +GGDG TG +G G G G GGA G G GS GG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 863 NGGTGGDGGKGGSGGQGGNGGAAGKALAASY-ADGAEGAGGAG 904 +G GG+G GG G GGN A +A + A GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.005 Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 704 SGGNGIGGTGGDGGDNGAGGAGGTGGSGSTTGSDGASGTTTTSGGNGGNGGRGADSVMIG 763 SGG+G G G +G G TG SDG SG ++ + GG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDG-SGWSSENNPWGGGSGSGIHWGGGS 60 Query: 764 GKGAAGGDGGDGGLYGNGGKG 784 G G GG+G GG G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.005 Identities = 26/99 (26%), Positives = 34/99 (34%) Query: 1251 GAGIYNKGGTGGVGGDGGNGTNGAGGKGGSGGNGGRGADASLFADAGDGGTGGDGGDGGT 1310 G G + G G+ G G G GG+ G ++ + + G GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 1311 GTTGAGRGGTGGAGGGGGTGTGTPPPFGTGAPGGSGGTG 1349 G G G G GG + P FG A G G Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.5 bits (76), Expect = 0.006 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 589 GIGGSGGEGGAGGMGGAMAGHGGDGGAGGHGGQGGSGGSGSRGADGVTGPNPNGGGGGDG 648 G G G GA G + G G GG G S + G +G + GGG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 649 GAGGAGGQGGNG---GLAGHAQAAGYSDGVQGVGGAGGKGGAGGLAGDGGTGA 698 G GG G G G G A AA + G + G G A ++ + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 33.5 bits (76), Expect = 0.006 Identities = 33/124 (26%), Positives = 38/124 (30%) Query: 1071 GGSAGGAGVAGVQDGAGGAGGGGGLGGSGGAGGAGGVGGIGGQAHAGGAFHDGDAGAGGL 1130 GG G GG GLG GGA G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1131 GGKGGTGGTGGKGGTGGGGADATVFEPFAGNGGHGGAGGGGGTGGAGGAGGTSGDGVTVA 1190 G GG G +GG GTGG + F GG + GA + + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 1191 GAGP 1194 GP Sbjct: 123 LKGP 126 Score = 33.5 bits (76), Expect = 0.006 Identities = 33/108 (30%), Positives = 42/108 (38%) Query: 598 GAGGMGGAMAGHGGDGGAGGHGGQGGSGGSGSRGADGVTGPNPNGGGGGDGGAGGAGGQG 657 G G G H G G G GG S G+ + NP GGG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 658 GNGGLAGHAQAAGYSDGVQGVGGAGGKGGAGGLAGDGGTGAAGTFASG 705 GNGG G++ + G A G L+ G G A + ++G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.5 bits (76), Expect = 0.006 Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 6/113 (5%) Query: 144 GNGGSGGSGAAGQAGGA--GGAAGLIGNGGAGGAGGQGMFN----GGSGGAGGWAGLIGA 197 G G G + A G GG GL GGA G N GGSG W G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 198 GGAGGVGGTGVALDGGAGGAGGNAGVLFGPGGIGGSGGQGMASGGAGGAGGAS 250 G GG G +G G + A V FG + G G+A + GA A+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 33.1 bits (75), Expect = 0.008 Identities = 39/112 (34%), Positives = 47/112 (41%), Gaps = 9/112 (8%) Query: 483 GGTGAGGNGGHGGDPGSGGAGGAGGAGSSAGAAGAGGLSPTTGGNGGNGGRGADGYGTGI 542 GG G G N G G+ GG G G GA+ G S GG G G+GI Sbjct: 3 GGDGRGHNTGAHSTSGNIN-GGPTGLGVGGGASDGSGWSSENNPWGG-------GSGSGI 54 Query: 543 SGASGGAGGDGGRYGNGGDG-GAGGDGMGGASGFSIVFPPGQDGGGGGIGGS 593 G G+GG GN G G G GG+ A+ + FP G GG+ S Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 33.1 bits (75), Expect = 0.008 Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 5/107 (4%) Query: 1103 GAGGVGGIGGQAHAGGAFHDGDAGAGGLGGKGGTGGTGGKGGTGGGGADATVFEPFAGNG 1162 G G G G G + G G G GG G + GGG+ + + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI-----HWG 57 Query: 1163 GHGGAGGGGGTGGAGGAGGTSGDGVTVAGAGPTGGTGAGGAGGNGGA 1209 G G G GGG G +GG GT G+ VA G G G A Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.010 Identities = 27/103 (26%), Positives = 36/103 (34%) Query: 939 NGAGGAGGKGGTGLTTGADGATGSRLTAGGNGGDGGDGGSAATAGAKGGAGGVGGDGGLY 998 +G G G G T+G + L GG DG S G G+ GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 999 GNGGKGGNGGAGGNGAAGSNASGAGATGGTGLMGGTGGSGGAG 1041 G G GG+G G+ ++ A T G+GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.4 bits (73), Expect = 0.013 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 946 GKGGTGLTTGADGATGS-RLTAGGNGGDGGDGGSAATAGAKGGAGGVGGDGGLYGNGGKG 1004 G G G TGA +G+ G G GG + + GG G G +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1005 GNGGAGGNGAAGSNASGAGATGGTGLMGGTGGSGGAGGEGGALAGNGG 1052 GNGG GN GS G + + G G G A++ + G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.4 bits (73), Expect = 0.013 Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 12/100 (12%) Query: 1195 TGGTGAGGAGGNGGAGGNADGGGIVNPEYGDGGAGGNGGNGSSGGDGGSGGTGGRSGAGI 1254 +GG G G G GN +GG G G G + SG + GG SG+GI Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGP-------TGLGVGGGASDGSGWSSENNPWGGGSGSGI 54 Query: 1255 YNKGGTGGVGGDGGNGTNGAGGKGGSGGNGGRGADASLFA 1294 + GG+G GNG GGSG G A A+ A Sbjct: 55 HWGGGSGH-----GNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 32.4 bits (73), Expect = 0.015 Identities = 27/74 (36%), Positives = 32/74 (43%) Query: 1190 AGAGPTGGTGAGGAGGNGGAGGNADGGGIVNPEYGDGGAGGNGGNGSSGGDGGSGGTGGR 1249 GA T G GG G G GG +DG G + GG G+G + G G+GG G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 1250 SGAGIYNKGGTGGV 1263 SG G G V Sbjct: 71 SGGGSGTGGNLSAV 84 Score = 32.0 bits (72), Expect = 0.017 Identities = 27/90 (30%), Positives = 34/90 (37%) Query: 582 GQDGGGGGIGGSGGEGGAGGMGGAMAGHGGDGGAGGHGGQGGSGGSGSRGADGVTGPNPN 641 G DG G G G G + GG G + G GS G + + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 642 GGGGGDGGAGGAGGQGGNGGLAGHAQAAGY 671 G GGG+G +GG G GGN A G+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92 Score = 31.6 bits (71), Expect = 0.027 Identities = 29/120 (24%), Positives = 34/120 (28%) Query: 1040 AGGEGGALAGNGGQGGSGGSGGIGGTGGQGGGGSAGGAGVAGVQDGAGGAGGGGGLGGSG 1099 +GG+G +GG G G GG G G G G GGSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1100 GAGGAGGVGGIGGQAHAGGAFHDGDAGAGGLGGKGGTGGTGGKGGTGGGGADATVFEPFA 1159 G G GG G A G G G G A + + A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Score = 31.6 bits (71), Expect = 0.028 Identities = 25/81 (30%), Positives = 31/81 (38%) Query: 296 SGSGGAGGDGGLGGLVYGNGGGGGAGGVGGAGGAGIVSGAAGSGGHGGTGGAAGLWGVGG 355 SG G G + G GG GVGG G + + GG+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 356 HGGDGAHGGAGASGGAGDAGS 376 HG G +G +G G G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 31.6 bits (71), Expect = 0.028 Identities = 41/120 (34%), Positives = 47/120 (39%), Gaps = 12/120 (10%) Query: 784 GGDGGTGGTGQGGISFLAPGGQTGGDGSTGGTGGTG------------GAGGSGGAMAGK 831 GGDG TG S GG TG G + G+G G+G G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 832 GGDGGAGGMGGGGGVGGNGSNGDHGVSGGNVNGGTGGDGGKGGSGGQGGNGGAAGKALAA 891 G GG G GGG G GGN S V+ G T G GG S G A +AA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Score = 30.8 bits (69), Expect = 0.039 Identities = 24/72 (33%), Positives = 27/72 (37%) Query: 376 SGGGDAGDGGAGGRGGWLVGGGGAGGSAGSGGGGGAGGSGANAVTLGSAGGNGGNGGDGG 435 SGG G + GG G G G G+G S N G +G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 436 AGGVGGAGGRGG 447 G GG G GG Sbjct: 62 HGNGGGNGNSGG 73 Score = 30.8 bits (69), Expect = 0.046 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 915 NGGDGADAAAGSAGTGGNGGHGGNNGAGGAGGKGGTGLTTGAD---GATGSRLTAGGNGG 971 +GGDG G+ T GN G G G G+G ++ + G +GS + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 972 DGGDGGSAATAGAKGGAGG 990 G GG+ + G G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 30.8 bits (69), Expect = 0.046 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 1139 TGGKGGTGGGGADATVFEPFAGNGGHGGAGGGGGTGGAGGAGGTSGDGVTVAGAGPTGGT 1198 +GG G GA +T G G G GGG G + G + +G GG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTG-LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1199 GAGGAGGNGGAGGNADGGG 1217 G G GGNG +GG + GG Sbjct: 61 GHGNGGGNGNSGGGSGTGG 79 Score = 30.8 bits (69), Expect = 0.047 Identities = 38/120 (31%), Positives = 44/120 (36%), Gaps = 7/120 (5%) Query: 213 GAGGAGGNAGVLFGPGGI-GGSGGQGMASGGAGGAGGASGLVGNGAVGGAGGIGTTDGGA 271 G G G N G G I GG G G+ G + G+G +S G G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 272 GGQGGNARLFGTGGVGGHGGTGAGSGSGGAGGDGGLGGLVYGNGGGGGAGGVGGAGGAGI 331 G GGN G GG GTG + A G L GG GA A I Sbjct: 63 GNGGGN------GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116
>cloacin#Cloacin signature. Length = 551 Score = 45.5 bits (107), Expect = 6e-07 Identities = 38/109 (34%), Positives = 42/109 (38%), Gaps = 12/109 (11%) Query: 127 NGAPGTGQAGGA----GGILWGNGGAGGSGAPGQQGGSGGNAGLIGNGGVGGVGGIGGGV 182 +G G G GA G I NGG G G G G S G+ N GG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNI---NGGPTGLGVGG--GASDGSGWSSENNPWGGGSGSGIHW 56 Query: 183 GGVGGTGGWLLGNGGTGGTGGVGTGNIAGGAGGFGGSALSLLGNPGATG 231 GG G G GG+G G + FG ALS PGA G Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS---TPGAGG 102 Score = 41.2 bits (96), Expect = 1e-05 Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 15/109 (13%) Query: 148 AGGSGAPGQQGGSGGNAGLIGNGGVGGVGGIGGGV------------GGVGGTG-GWLLG 194 +GG G G G+ +G I NGG G+G GG GG G+G W G Sbjct: 2 SGGDGR-GHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 195 NGGTGGTGGVGTGNIAGGAGGFGGSALSLLGNPGATGTPGGHADVLYLS 243 +G G G +G +G G A + A TPG + +S Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSIS 108 Score = 40.9 bits (95), Expect = 2e-05 Identities = 35/111 (31%), Positives = 42/111 (37%), Gaps = 13/111 (11%) Query: 123 GEGANGAPGTGQA---GGAGGILWGNGGAGGSGAPGQQ----GGSGGNAGLIGNGGVGGV 175 G G N + GG G+ G G + GSG + GGSG G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN- 64 Query: 176 GGIGGGVGGVGGTGGWLLGNGGTGGTGGVGTGNIAGGAGGFGGSALSLLGN 226 GG G GG GTGG + V G A G GG A+S+ Sbjct: 65 GGGNGNSGGGSGTGG-----NLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 37.4 bits (86), Expect = 2e-04 Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 10/94 (10%) Query: 127 NGAPGTGQAGGAG--GILWG-----NGGAGGSGAPGQQGGSGGNAGLIGNGGVGGVGGIG 179 NG P GG G W GG GSG G GN G GNG GG G G Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG--GNGNSGGGSGTG 78 Query: 180 GGVGGVGGTGGWLLGNGGTGGTGGVGTGNIAGGA 213 G + V + T G GG+ +I+ GA Sbjct: 79 GNLSAVAAPVAFGFPALSTPGAGGLAV-SISAGA 111
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 9e-04 Identities = 45/121 (37%), Positives = 52/121 (42%), Gaps = 22/121 (18%) Query: 153 SGGLQNGGSGGSAGLIGNGGNGGNGFLGGTGGAGGSGGWLAGSGGNGGAGGSVSGIGEIA 212 SGG G + G+ GN NGG LG GGA GW S N GGS SGI Sbjct: 2 SGGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGW--SSENNPWGGGSGSGIHWGG 58 Query: 213 GAGGAGGNAPLLGWGGNGGVGGNAPQGTGGIGGAGGAGGALSAVGGTG----GTGGSGGV 268 G GNGG GN +GG G GG A++A G T G+GG+ Sbjct: 59 G-----------SGHGNGGGNGN----SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Query: 269 A 269 A Sbjct: 104 A 104 Score = 32.8 bits (74), Expect = 0.005 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 1/115 (0%) Query: 326 GIGGFANDTGGLGGQGGDATALLGVGVGGAGSIG-GAGNAAASAGGAGGAGAALVGVGVG 384 G G ++TG G G+GVGG S G G + GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 385 GIGGIGGFANGTSGAGGAGGSGAAVMGLGVGGAGSIGGAANSTAGAGGDGGEGVA 439 G GG G + G SG GG + AA + G + G + + + G +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 32.4 bits (73), Expect = 0.005 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 143 GNGGNGYSFTSGGLQNGGSGGSAGLIGNGGNGGNGFLGGT----GGAGGSGGWLAGSGGN 198 G G N + ++ G NGG G G G + G+G+ GG+G W GSG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGV--GGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 199 GGAGGSVSGIGEIAGAGGAGGNAPL 223 G G SG G G + AP+ Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 32.0 bits (72), Expect = 0.007 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 461 AGGQGGQGAVLIGAGFGGAGGDGGSATVNAVGNGGDGGNAGALFGIGAGGHGGNAGSGVG 520 G G +G G G + G G S+ N G GG G G G G GGN SG G Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSGHGNGGGNGNSGGG 74 Query: 521 AANGGNGGSV 530 + GGN +V Sbjct: 75 SGTGGNLSAV 84 Score = 31.6 bits (71), Expect = 0.010 Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 12/104 (11%) Query: 474 AGFGGAGGDGGSATVNAVGNGGDGGNAGALFGIGAGGHGGNAGSGVGAANGGNGGSVGVI 533 +G G G + G+ + + NGG G G G + GSG + N GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTG--------LGVGGGASDGSGWSSENNPWGG----G 49 Query: 534 SDGSFTPTPVGYGGNGGNGVNGGTGGTGGTGGTLIGTDGTNGSP 577 S GNGG N G G G + + G P Sbjct: 50 SGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFP 93 Score = 30.8 bits (69), Expect = 0.015 Identities = 28/80 (35%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 225 GWGGNGGVGGNAPQGTGGIGGAGGAGGALSAVGGT------GGTGGSGGVAGGDGGAGGA 278 G G N G + GG G G GGA G + GG GSG GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 279 GRGLFYGLGGAGGMGGSATA 298 G G G G SA A Sbjct: 66 GGNGNSGGGSGTGGNLSAVA 85 Score = 30.5 bits (68), Expect = 0.021 Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 5/120 (4%) Query: 258 GTGGTGGSGGVAGGDGGAGGAGRGLFYGLGGAGGMGGSATAVTPHTGGTGGVGGEGGAVF 317 G G G + G G G GL G G + G G S+ GG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSE-----NNPWGGGSGSGIHWG 57 Query: 318 GYAQGGTGGIGGFANDTGGLGGQGGDATALLGVGVGGAGSIGGAGNAAASAGGAGGAGAA 377 G + G GG G + G GG A + G + G G A + + GA A A Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 30.1 bits (67), Expect = 0.026 Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Query: 125 GANGTATSPNGGAGGILYGNGGN-GYSFTSGGLQNGGSGGSAGLIGNGGNGGNGFLGGTG 183 GA+ T+ + NGG G+ G G + G ++S GG GS G G GNG G Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 184 GAGGSGGWLAGSGGNGGAGGSVSGIGEIA-GAGGAGGNA 221 G G +G+GGN A + G A GAGG A Sbjct: 72 GGG------SGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.1 bits (67), Expect = 0.026 Identities = 27/90 (30%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 123 GNGANGTATSPNGGAGGILYGNGGNGYSFTSGGLQNGGSGGSAGLIGNGGNGGNGFLGGT 182 G G N A S +G NGG GG +G S GG+G GG Sbjct: 6 GRGHNTGAHSTSGNI------NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 183 GGAGGSGGWLAGSGGNGGAGGSVSGIGEIA 212 G G GG GG+G G + +A Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89
>cloacin#Cloacin signature. Length = 551 Score = 40.5 bits (94), Expect = 2e-05 Identities = 40/119 (33%), Positives = 49/119 (41%), Gaps = 10/119 (8%) Query: 153 SGGTQSGGTGGSAGLIGNGGNGGNGFLGGAGGAAGSGGWLAGSGGNGGAGGSVTGVGEVG 212 SGG G G+ GN NGG LG GGA+ GW S N GGS +G+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGW--SSENNPWGGGSGSGIHWGG 58 Query: 213 GAGGAGGSAPLLGWGGNGGAGGDSTQGAGGMGGAGGAGGALASIGGAGGAGGTGTTSGG 271 G+G G GGNG +GG S G A ++ G G + S G Sbjct: 59 GSGHGNG-------GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 36.6 bits (84), Expect = 2e-04 Identities = 39/138 (28%), Positives = 49/138 (35%), Gaps = 7/138 (5%) Query: 225 GWGGNGGAGGDSTQGAGGMGGAGGAGGALASIGGAGGAGGTGTTSGGDGGVGGEGSGRLF 284 G G N GA S GG G G GGA G + G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGA-----SDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 285 GLGGAGGAGGTGITSGGVGGDGGAGGGLLFGLGG--SGGAGGVATDATGIGGTGGAGGES 342 G G GG G +G SG G + FG + GAGG+A + + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIM 120 Query: 343 GVIIGYAQSGAGGIGGYG 360 + G + G G+ YG Sbjct: 121 AALKGPFKFGLWGVALYG 138 Score = 35.5 bits (81), Expect = 5e-04 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 459 NGGDG-GNGGGLFNIGRGGDGGNGGNAGATGGNGGNGGNIGVVANGTFTQTLFGDGGNGG 517 +GGDG G+ G + +GG G G + G+G + G + + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 518 NGGTGGTPGTGGTGGSGG 535 +G GG +GG G+GG Sbjct: 62 HGNGGGNGNSGGGSGTGG 79 Score = 33.5 bits (76), Expect = 0.002 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 455 GAGGNGGDGGNGGGLFNIGRGGDGGNGGNAGATGGNGGNGGNIGVVANGTFTQTLFGDGG 514 G G N G G + N G G G GG + +G + N G +G G G Sbjct: 6 GRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 515 NGGNGGTGGTPGTGGTGGS 533 GGNG +GG GTGG + Sbjct: 65 GGGNGNSGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.002 Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 421 GTATGGDGGAGGQGAALWGAGFGGDGAVGGNSFVGAGGNGGDGGNGGGLFNIGRGGDGGN 480 G GG G G G A G+G+ + G G+G GG G G GG GN Sbjct: 18 GNINGGPTGLGVGGGASDGSGWSSENNPWGG---GSGSGIHWGGGSGH----GNGGGNGN 70 Query: 481 GGNAGATGGNG 491 G TGGN Sbjct: 71 SGGGSGTGGNL 81 Score = 33.1 bits (75), Expect = 0.003 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 2/99 (2%) Query: 421 GTATGGDGGAGGQGAALWGAGFGGDGAVGGNSFVGAGG--NGGDGGNGGGLFNIGRGGDG 478 G G + GA + G G G + G N GG+G G+ G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 479 GNGGNAGATGGNGGNGGNIGVVANGTFTQTLFGDGGNGG 517 GGN + GG+G G V A F G GG Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.1 bits (75), Expect = 0.003 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 192 LAGSGGNGGAGGSVTGVGEVGGAGGAGGSAPLLGWGGNGGAGGDSTQGA-GGMGGAGGAG 250 ++G G G G+ + G + G G +G G + G+G S GG G+G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLG----VGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 251 GALASIGGAGGAGGTGTTSGGDGGVGGEGSGRLFGLGG--AGGAGGTGITSGG 301 G + G GG G +G SG G + + FG GAGG ++ Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 32.8 bits (74), Expect = 0.004 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 2/118 (1%) Query: 261 GAGGTGTTSGGDGGVGGEGSGRLFGLGGAGGAGGTGITSGGVGGDGGAGGGLLFGLGGSG 320 G G G +G G G G G + G+G +S GG+G G+ +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 321 GAGGVATDATGIGGTGGAGGESG--VIIGYAQSGAGGIGGYGGDIGGTGGAGGVAGVL 376 G GG ++ G GTGG V G+ G GG I + +A ++ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIM 120 Score = 32.0 bits (72), Expect = 0.006 Identities = 36/120 (30%), Positives = 43/120 (35%), Gaps = 12/120 (10%) Query: 240 AGGMGGAGGAGGALASIGGAGGAGGTGTTSGGDGGVGGEGSGRLFGLGGAGGAGGTGITS 299 +GG G G S GG G G G G G +G G G G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 300 GGVGGDGGAGGGLLFGLGGSGGAGGVATDATGIG------GTGGAGGESGVIIGYAQSGA 353 G GG G G GGSG G ++ A + T GAGG + I A S A Sbjct: 62 HGNGGGNGNSG------GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 31.2 bits (70), Expect = 0.010 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 415 GGVGGFGTATGGDGGAG-GQGAALWGAGFGGDGAVGGNSFVGAGGNGGDGGNGGG 468 GG G G G G+G WG G G GG S G GG G+ G G G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76 Score = 30.5 bits (68), Expect = 0.022 Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 10/121 (8%) Query: 285 GLGGAGGAGGTGITSGGVGGDGGAGGGLLFGLGGSGGAGGVATDATGIGGTGGAGGESGV 344 G G G G TSG + G G G G S G+G + + GG+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV---GGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 345 IIGYAQSGAGGIGGYGGDIGGTGGAGGVAGVLVGAGVGGFGGMGGAGTTGGAGGVGGQGV 404 G GG G+ GG G GG + GF + G G A + + Sbjct: 60 -------SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112 Query: 405 T 405 + Sbjct: 113 S 113 Score = 29.7 bits (66), Expect = 0.032 Identities = 28/99 (28%), Positives = 30/99 (30%) Query: 123 GDGANGTATSPNGGAGGFLYGNGGNGYSFTSGGTQSGGTGGSAGLIGNGGNGGNGFLGGA 182 G G N A S +G G G G G + G S G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 183 GGAAGSGGWLAGSGGNGGAGGSVTGVGEVGGAGGAGGSA 221 GG SGG G V GAGG A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 134 bits (340), Expect = 6e-39 Identities = 82/353 (23%), Positives = 132/353 (37%), Gaps = 50/353 (14%) Query: 1 MKVLVTGSAGFINGYVVQELLQAGHEVVGIDNYSKYGKVTKSYD-----DHPNYHFVEGD 55 MK LVTG+AGFI +V + LL+AGH+VVGIDN + Y V+ P + F + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 56 VKDVDLMFELVE--GCEQMVASAARIGGITYFHEYAYDLLAENERIAAAHFDTAIYAYRK 113 + D + M +L E++ S R + Y E + N F + R Sbjct: 61 LADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNL----TGFLNILEGCRH 115 Query: 114 GWLKKINVISSSMVFENASIFPTPEKHITECPPPTSTYGFQKLACEYFAHGAYEQYGLPY 173 ++ + SSS V+ P + P S Y K A E AH YGLP Sbjct: 116 NKIQHLLYASSSSVYGLNRKMPFSTDDSVD--HPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 174 TIIRPFNCVGTGEQRALGGREIPSGNVKLAMSHVVPDLVQKVVKGQDPLHILGDGSQVRH 233 T +R F G P G +A + + +++G+ + + G R Sbjct: 174 TGLRFFTVYG------------PWGRPDMA----LFKFTKAMLEGK-SIDVYNYGKMKRD 216 Query: 234 YTYGGDLARGIRTCMEHPAALNGD-----------------FNLSTPEATTVLELAEVIW 276 +TY D+A I + + +N+ +++ + + Sbjct: 217 FTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE 276 Query: 277 RKMRPDTPFRYESDPPFEHDVQLRSPDVHKATQVLGFEATTTLDAMLDEVIPW 329 + + P DV S D +V+GF TT+ + + W Sbjct: 277 DAL--GIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 28.6 bits (64), Expect = 0.028 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 3/25 (12%) Query: 108 ILPSFPSVATPEVFQNAFHQDFPRV 132 I+P P VA VF AFHQ P Sbjct: 136 IMPDVPMVA---VFDTAFHQTMPDY 157
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 4e-12 Identities = 24/164 (14%), Positives = 46/164 (28%), Gaps = 15/164 (9%) Query: 9 KARIRNAAVARFARDGFQKVNLRAIATSAGVSEALIFHHFGSKDGL-RAACDEYVLNVLV 67 + I + A+ F++ G +L IA +AGV+ I+ HF K L + N+ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 68 GRARTAGRPTAM-----ADLLGVYLSNPEEYR---------LQVQYMARAIEDDAPAAGT 113 + ++L L + + A Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 114 FVDTMVEESEAIFRAGAADGSMRPSSDPRALAVLNLLVALGLLT 157 + E + + R A++ GL+ Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (298), Expect = 7e-35 Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 33/246 (13%) Query: 13 ALVTGAARGIGRSVADTLESKGITVL----RPGRQE-----------------LDLSIPE 51 A +TGAA+GIG +VA TL S+G + P + E D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 52 SVADYLTGLDQVV---DILVLNAGINNPEPLQTLSADNWSSTQQVNVTANLLLLQGLLPR 108 ++ + +++ + DILV AG+ P + +LS + W +T VN T + + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 109 MAAAGFGRVVAVSSVYAHRARTGRVAYSASKAAIEEVVRSVAVEYGPYGVLANCVAPGFV 168 M G +V V S A RT AY++SKAA + + +E Y + N V+PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 169 LTDL-----TYQNNDAKQLQALAER----VPVGRLAEPEEIAVFISWLVSAENSYITGQS 219 TD+ +N + ++ E +P+ +LA+P +IA + +LVS + +IT + Sbjct: 191 ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHN 250 Query: 220 ITIDGG 225 + +DGG Sbjct: 251 LCVDGG 256
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 38.3 bits (89), Expect = 9e-05 Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 16/198 (8%) Query: 89 SVEATAQQDL--SMAEQGLVNAVNAPAQALLGHPIIGTGGSGSQSATTGTSTSGVTSGSV 146 ++ + ++ +Q L VN P L S S + +G + Sbjct: 576 TLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLA 635 Query: 147 -ASGSA--AGSVSSGATAGTVSTGATTGSVSSGATA------GTVSAGATDGAVTSGTTA 197 G+ ++S G G + AT G + G + Sbjct: 636 GVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYY 695 Query: 198 SSSDGTTVSAGGVAATDPGSDGGVAVSDPGSDGGVAVSGSGSGS----GVAVGGTDTPGT 253 S G A GV P +D V V PG+ V G AV T Sbjct: 696 GVSGGVLAHANGVTLGQPLNDTVVLVKAPGA-KDAKVENQTGVRTDWRGYAVLPYATEYR 754 Query: 254 SAPAPVTPNTFGDVVAAP 271 + NT D V Sbjct: 755 ENRVALDTNTLADNVDLD 772
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 1e-04 Identities = 39/131 (29%), Positives = 50/131 (38%), Gaps = 13/131 (9%) Query: 125 GANATVAGGDGRPGGILMGKGGDGAPG--GPGQPGGNGGAAGLIGTGGAGGKEAPSMPGG 182 GA++T +G P G+ +G G G P G G +G+ GG+G GG Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG-----NGG 66 Query: 183 LGGRGGLLWGDGGKGGDGGAPVYDAWGYLLAEAGTGGAGGLPGMFGGLPGVAGAWGGEVP 242 G G G GG APV A+G T GAGGL G A ++ Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPV--AFG--FPALSTPGAGGLAVSISA--GALSAAIADIM 120 Query: 243 TALAAPMALSA 253 AL P Sbjct: 121 AALKGPFKFGL 131
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 32.4 bits (73), Expect = 0.004 Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 86 LNPGARRSAPVQQQAAVPAPAPPNPANQAPNATQIAPDAAPIPAPAPPPPPD-GSDAGGA 144 L PG+ AP Q +PA NPAN AP+ P P P P PD DA Sbjct: 315 LTPGSAE-APNAQPLPEVSPAE-NPANNP------APNENPGTRPNPEPDPDLNPDANPD 366 Query: 145 LGGATTSLAEWVTGPDSPNKTLERFGISGTDLGIL 179 G + + PD PN + G D G+L Sbjct: 367 TDGQPGTRPDSPAVPDRPNGRHRKERKEGEDGGLL 401
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (276), Expect = 4e-31 Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 14/252 (5%) Query: 14 RVAVVTGGAGGIGAATSRLFAQHGAQVVIADIDAELAHRTVDEIGGAAWV---VGTDVRD 70 ++A +TG A GIG A +R A GA + D + E + V + A DVRD Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 71 ADQVSALAQRVLDRYGRVDILVNNVGHWLRHPGNFVDTDPQLWDELYRVNLHHVLLATHA 130 + + + R+ G +DILVN G + PG + W+ + VN V A+ + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAG--VLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 131 FLPAMIEQHGGAIVNVSSVEGLRGYPEDPVYAAFKAAVIHFTRSLAVQVGNHGVRINAIA 190 M+++ G+IV V S YA+ KAA + FT+ L +++ + +R N ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 191 PDVTESLQVPYSQWLSD--AEQT------QWPGWVPVGRMGVPEDQARVILFLACELSAF 242 P TE+ + +S W + AEQ + +P+ ++ P D A +LFL + Sbjct: 187 PGSTET-DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 243 VTGHTIPTDGGT 254 +T H + DGG Sbjct: 246 ITMHNLCVDGGA 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.0 bits (106), Expect = 3e-08 Identities = 21/188 (11%), Positives = 60/188 (31%), Gaps = 20/188 (10%) Query: 11 DRRRAAADRIYDAATDLIAHEGINQLDIDRLATLVHCSRATVYRYVGGKNDIRNVVVKRA 70 + I D A L + +G++ + +A +R +Y + K+D+ + + + + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 71 AARIADSVRSAVENLSG------RERVVAAI-----------ILSVQRIRADPLGQLMIS 113 + I + G RE ++ + ++ + + + +G++ + Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 114 SIHGGTQEVAWLADSPLLAGVASDLTGL-AGGDPHAAKWVVRIVLSLMY--WPAESEDVE 170 + + L A A ++R +S + W + + Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186 Query: 171 RLMVEKFV 178 + Sbjct: 187 LKKEARDY 194
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 7e-09 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 3/131 (2%) Query: 10 DRSAVAAELIYDAAAELIASDGLSAFDIDKLAARVHCSRATIYRYAGGKAKIRDVVIARA 69 + + I D A L + G+S+ + ++A +R IY + K+ + + + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 70 AARIVESVRAQAESLTG--AERVVASVEFALAGVRSDPLGRHLVGSFPKSANGA-EWFVG 126 + I E G + + L ++ R L+ E V Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 127 SKLVANFAADL 137 + N + Sbjct: 127 QQAQRNLCLES 137
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 2e-04 Identities = 28/80 (35%), Positives = 35/80 (43%) Query: 1202 GNGGNGGTGGTGSTGTAGSSDVMGANGGAGGSGWAGGDGGAGGMGGTLAGHGGDGGDGGS 1261 G G N G T G + + G + GSGW+ + GG G+ GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1262 GGTGGTGGRGGNGFNGSTKA 1281 GG G +GG G G N S A Sbjct: 66 GGNGNSGGGSGTGGNLSAVA 85 Score = 35.1 bits (80), Expect = 0.003 Identities = 28/102 (27%), Positives = 34/102 (33%) Query: 1404 VAGGAGGAGGDGGLYGDGGDGGSGGNGGAGKAGAAGVSAGSNGEAGGQAGAGGVGGAGGN 1463 ++GG G G G G G G + G S G G+ GG+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1464 GGANAGNGGTGGNGGDGGVGGTGGAGKVGTTGPAGGAGGEGG 1505 G N G G G G G + A V PA G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.3 bits (78), Expect = 0.005 Identities = 33/99 (33%), Positives = 37/99 (37%) Query: 171 GNGGAGGAGGISAAGNGGSGGVGGRGGLVYGSGGAGGAGGQGALSGGAGGAGGGAWLWGA 230 G G GA S NGG G+G GG GSG + G SG GGG+ Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 231 GGAGGSGGEGLASAGGVGGAGGNAGLIGTGGLGGAGGVG 269 GG G SGG A A GAGG+ Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.3 bits (78), Expect = 0.006 Identities = 27/101 (26%), Positives = 34/101 (33%) Query: 1444 SNGEAGGQAGAGGVGGAGGNGGANAGNGGTGGNGGDGGVGGTGGAGKVGTTGPAGGAGGE 1503 S G+ G NGG G G + G G G +G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1504 GGDGGKGGTGGRGGNGGAGGTAQAAGYSDGSQGVGGDGGAG 1544 G+GG G G G G +A AA + G + G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.3 bits (78), Expect = 0.007 Identities = 28/82 (34%), Positives = 35/82 (42%) Query: 1511 GTGGRGGNGGAGGTAQAAGYSDGSQGVGGDGGAGGTGGTAGNGGKGGAGTWAVNNGIGGK 1570 G GRG N GA T+ GVGG G + N GG+G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1571 GGNGGNAGTGGTGGSFGTGSQI 1592 G GGN +GG G+ G S + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 33.5 bits (76), Expect = 0.010 Identities = 28/78 (35%), Positives = 33/78 (42%) Query: 286 GRGGTGGVGGASDGGNGGAGGDGGVGGGLFGSGGAGGSGGAGGVLGTGGDGGSGGAAAGL 345 GRG G S NGG G G GG GSG + + GG G+G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 346 WGAGGSGGAGGNGADGIS 363 G G SGG G G + + Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 33.1 bits (75), Expect = 0.013 Identities = 26/81 (32%), Positives = 34/81 (41%) Query: 1170 NGGDGGNGGSGTTGTTGSKGGAGGAGGDGGRYGNGGNGGTGGTGSTGTAGSSDVMGANGG 1229 +GGDG +G T+G+ G G GG +G + G +GS G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1230 AGGSGWAGGDGGAGGMGGTLA 1250 G G G GG G GG L+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 33.1 bits (75), Expect = 0.014 Identities = 32/117 (27%), Positives = 42/117 (35%) Query: 1236 AGGDGGAGGMGGTLAGHGGDGGDGGSGGTGGTGGRGGNGFNGSTKAGLNGGDAGDGGAGG 1295 +GGDG G +GG G G GG G + G +G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1296 VGGAGGNGGAAGLAQAAGFSDGIQGAGGAGGDGGAGGGAGDGGDGANAAAGSGAVGG 1352 G GGNG + G + G + G + GAG +A A S A+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 32.8 bits (74), Expect = 0.016 Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 5/113 (4%) Query: 1298 GAGGNGGAAGLAQAAGFSDGIQGAGGAGGDGGAGGGAGD----GGDGANAAAGSGAVGGN 1353 G G G G +G +G G GG G G G G+ + G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1354 GGDGGDPGLGGGGGAGGTGATTGAHGADGLSP-TTGGNGGKGGNGGSGAIGVA 1405 G GG+ GGG G GG + A A G +T G GG + +GA+ A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 32.4 bits (73), Expect = 0.021 Identities = 39/104 (37%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 270 GQNGGAGGDGGNAPLLGRGGTGGVGGASDGG--------NGGAGGDGGVGGGLFGSGGAG 321 G N GA GN G G G GGASDG GG G G GG G G G Sbjct: 8 GHNTGAHSTSGNING-GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 322 GSGGAGGVLGTGGDGGSGGAAAGLWGAGGSGGAGGNGADGISGG 365 G+G +GG GTGG+ + A S G A IS G Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.4 bits (73), Expect = 0.026 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 1673 GAGGAGGNGGTSRGDGGAGGAGGTGGVGGSGGDGA--DGTSGLFGGADGTAGGAGGDGGD 1730 G G G N G G G GVGG DG+ + +GG G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1731 GGAGGAGGAGGKAVSG 1746 G GG G +GG + +G Sbjct: 63 GNGGGNGNSGGGSGTG 78 Score = 31.6 bits (71), Expect = 0.036 Identities = 30/84 (35%), Positives = 32/84 (38%) Query: 1870 AGGAGGAGGTGSTQGSAGTTGAWRAGGDGGSGGDGGDGFGLWNPGEGGRGGSGGDGGTGG 1929 +GG G TG+ S G G GG DG NP GG G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1930 DGGDGGNGRVEIWEGRGGNGGNGA 1953 G GGNG G GGN A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 31.6 bits (71), Expect = 0.040 Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 1750 NGSQGAGGNGGAAGDGGDGGNGGNGHDGNNGSVPSGGTDRDGGDGQGGGDGGAGGAGGAG 1809 +G G G N GA G+ G G V G +D G + GG G+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTG-----LGVGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 1810 GNGGAAGAGGGGTRGAGGDGGDGGNGGFAGDGGLGMDGLDA 1850 G G G GGG GG G G A G L Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALST 97
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.3 bits (65), Expect = 0.037 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 10/99 (10%) Query: 54 GDGWLGPASESMEAAVFPYLAW--MNITGMQAEQTARQAAAAAGAFEAAFAMTVPPAQVA 111 G G G SES AA+ W + QAEQ AR AAA +A A Sbjct: 37 GGGKGGSKSES-SAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAK-------ANRD 88 Query: 112 ANRTQLQTLVATNLLGQNTPAIAATEAAYGEMWAQDAAA 150 A +L+ +V L + +ATE A+ A A Sbjct: 89 ALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAED 127
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 2e-04 Identities = 33/92 (35%), Positives = 40/92 (43%), Gaps = 3/92 (3%) Query: 171 GAGGAGGNSPLGNTANGGNGGTGGAGGLLFGPGGVGGAGGASFLTGGTGGDGGAGGLFGA 230 G G G N+ +T+ NGG G G G G G+G +S GG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV---GGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 231 GGLGGVGGSGNVGGNGGAGGAGGLLAGLVGAG 262 G G GG+GN GG G GG +A V G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 36.6 bits (84), Expect = 4e-04 Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 376 GGGGAGGAGGFGTISDGGAGGRGGVGGQLLGNGGAGGAGGQGGNDGGAGGLGGNGVLIGN 435 GG G G G + S GG G+G G G + G+G N+ GG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV---GGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 436 GGNGGVGGVGETPGGDGGGGISGLLLGADGFNAPASSSP 474 G+G GG G + GG G GG + F PA S+P Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTP 98 Score = 35.8 bits (82), Expect = 9e-04 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 733 IGGAGGRGGNAGLLFSDAGV-GGFGGFGGTGGGTGGTGGNAGWLGSGGSGGAGGGSNGDG 791 + G GRG N G + + GG G G GG + G+G ++ GG G+G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 792 GAGGTGGSGGQIVGDGGAGGAGGQGDLLAAG 822 G G GG+G G G G +A G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 35.5 bits (81), Expect = 0.001 Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 7/110 (6%) Query: 760 GTGGGTGGTGGNAGWLGSGGSGGAGGGSNGDGGA------GGTGGSGGQIVGDGGAGGAG 813 G G T GN G G G GG S+G G + GG GSG G G G G Sbjct: 8 GHNTGAHSTSGNING-GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 814 GQGDLLAAGGSGGDGGQGGDAVLIGTGGNGGNGASGVLAGIGGDAGSGGL 863 G G+ G+GG+ V G GA G+ I A S + Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Score = 33.9 bits (77), Expect = 0.003 Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 5/111 (4%) Query: 229 GAGGLGGVGGSGNVGGNGGAGGAGGLLAGLVGAGGGDGGSGGLGAAGGDGGNGGRAGLFG 288 G G G G+ + GN G G + G GA G G S GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG--GASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 289 GAGGAGGMGATGGHSGGDGGAGGDAGLL---FGTGGAGGAGGHAFDGDGGA 336 G G GG G +GG SG G A + F GAGG A GA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.9 bits (77), Expect = 0.003 Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 321 GAGGAGGHAFDGDGGAGGAGGNAGLMFSSGGSGGVGGAGSIDGGAGGAGGDAGWLGGGGA 380 G G G + GG GL G S G G + + GG+G W GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 381 GGAGGFGTISDGGAGGRGGVGGQLLGNGGAGGAGGQGGNDGGAGGLG 427 G GG +G +GG G GG L G + GAGGL Sbjct: 63 GNGGG-----NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.1 bits (75), Expect = 0.005 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 3/112 (2%) Query: 523 GGAGGSAAATPGAAGGAGGAAGLVGAGGAGGAGANTGISNPGFGGAGGDGGAGGFLLGDG 582 G G +G G +G GG G+ N +GG G G G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 583 GAGGAGGAGAGAGGGVGGAGGAGGL---LGAGGTGGGGGVAPSLVDGGTGGA 631 GG G +G G+G G + A + A T G GG+A S+ G A Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 33.1 bits (75), Expect = 0.005 Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Query: 547 GAGGAGGAGANTGISNPGFGGAGGDGGAG---GFLLGDGGAGGAGGAGAGAGGGVGGAGG 603 G G GA + +G N G G G GGA G+ + GG G+G GGG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 604 AGGLLGAGGTGGGGGVAPSLVDGGTG-GAGGAGGAGGL 640 G GG+G GG ++ G A GAGGL Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 33.1 bits (75), Expect = 0.006 Identities = 35/104 (33%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Query: 300 GGHSGGDGGAGGDAGLLFGTGGAGGAGGHAFDGDGGAG-----GAGGNAGLMFSSGGSGG 354 G G + GA +G + G G GG A DG G + G G +G+ + G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 355 VGGAGSIDGGAGGAGGDAGWLGGGGAGGAGGFGTISDGGAGGRG 398 GG G +GG G G L A A GF +S GAGG Sbjct: 64 NGGGN---GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.007 Identities = 35/100 (35%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 144 GNGGAGGSGAAGQAGGD--GGAAGLIGAGGAGGAGGNSPLGNTANGGNG-GTGGAGGLLF 200 G G G + A G+ GG GL GGA G S N GG+G G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 201 GPGGVGGAGGASFLTGGTGGDGGAGGLFGAGGLGGVGGSG 240 G GG G G TGG A FG L G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.009 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 349 SGGSGGVGGAGSIDGGAGGAGGDAGWLGGGGAGGAGGFGTISDGGAGGRGGVGGQLLGNG 408 SGG G G+ GG G GGGA G+ + ++ GG G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS-GIHWGGGS 60 Query: 409 GAGGAGGQGGNDGGAGGLGGN 429 G G GG G + GG+G G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 31.6 bits (71), Expect = 0.014 Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 5/108 (4%) Query: 587 AGGAGAGAGGGVGGAGG-AGGLLGAGGTGGGGGVAPSLVDGGTGGAGGAGGAGGLFGGIF 645 +GG G G G G G G GGG GG+G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG-- 59 Query: 646 GAGGGDGGAGGFTGGIDGAGGVGGAGGNAGLLGGPG-GSGGSGGDGIA 692 +G G+GG G +GG G GG A G P + G+GG ++ Sbjct: 60 -SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 31.2 bits (70), Expect = 0.020 Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 263 GGDGGSGGLGAAGGDGG-NGGRAGLFGGAGGAGGMGATGGHSGGDGGAGGDAGLLFGTGG 321 GGDG GA G NGG GL G G + G G + ++ GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW-GGGSG 61 Query: 322 AGGAGGHAFDGDGGAGGAGGNA 343 G GG+ G G G +A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 30.1 bits (67), Expect = 0.044 Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 15/92 (16%) Query: 681 GGSGGSGGDGIAKLGLNADGGAGGAGGNGGFLFGSG-GTGGFGGVGGVGTSTGIGGAGGR 739 GG G G N +GG G G GG GSG + GG G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 740 GGNAGLLFSDAGVGGFGGFGGTGGGTGGTGGN 771 G GG G GG GTGGN Sbjct: 63 GN--------------GGGNGNSGGGSGTGGN 80
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.5 bits (76), Expect = 0.003 Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 456 LVITGRSGSGKTTLLRSLAELWPFASGTLSRPDGANDTMFLSQLPYVPLGSL 507 +V+ G G GK+TL+ +L L F+ G + ++ + L + Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEM 650
>SECA#SecA protein signature. Length = 901 Score = 839 bits (2170), Expect = 0.0 Identities = 282/813 (34%), Positives = 398/813 (48%), Gaps = 112/813 (13%) Query: 46 RLLGATTEKNQNRSLAQVTASADFDKEAADLNDEKLR-KAAGLLNLEDLADSAD--IPQF 102 ++ G+ ++ R V + E L+DE+L+ K A + + + IP+ Sbjct: 8 KVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEA 67 Query: 103 LAIAREAGERATGLRPFDVQLLGALRMLAGDVIEMATGEGKTLAGAIAAAGYALGGRHVH 162 A+ REA +R G+R FDVQLLG + + + EM TGEGKTL + A AL G+ VH Sbjct: 68 FAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVH 127 Query: 163 VVTINDYLARRDAEWMAPLLEAMDLTVGWITAESTGADRRAAYECDVTYASVNEIGFDVL 222 VVT+NDYLA+RDAE PL E + LTVG +R AY D+TY + NE GFD L Sbjct: 128 VVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYL 187 Query: 223 RDQLVTDVADLVSPNPDVALIDEADSVLVDEALVPLVLAGTTHRETPRLEII-KLVGQLV 281 RD + + V AL+DE DS+L+DEA PL+++G + + + K++ L+ Sbjct: 188 RDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 247 Query: 282 KDKD-------ADEYFATDADSRNVHLTEAGARKVEKAL-------GGIDLYSEEHVGTT 327 + + + +F+ D SR V+LTE G +E+ L G LYS ++ Sbjct: 248 RQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI-ML 306 Query: 328 LTEVNVALHAHVLLQRDVHYIVRDDAVHLINASRGRIAQLQRWPDGLQAAVEAKEGIETT 387 + V AL AH L RDV YIV+D V +++ GR Q +RW DGL AVEAKEG++ Sbjct: 307 MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQ 366 Query: 388 ETGEVLDTITVQALINRYVTVCGMTGTALAAGEQLRQFYKLGVSPIPPNTPNIREDESDR 447 + L +IT Q Y + GMTGTA + YKL +P N P IR+D D Sbjct: 367 NENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDL 426 Query: 448 VYITAAAKNDAIVEHIAEVHDTGQPVLVGTRDVAESEDLHERLLRRDIPAVVLNAKNDAE 507 VY+T A K AI+E I E GQPVLVGT + +SE + L + I VLNAK A Sbjct: 427 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHAN 486 Query: 508 EAAVIAEAGTLSRVTVSTQMAGRGTDIRLGGSDEA----------------------DHD 545 EAA++A+AG + VT++T MAGRGTDI LGGS +A HD Sbjct: 487 EAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHD 546 Query: 546 QVAELGGLHVVGTGRHHTQRLDNQLRGRAGRQGDPGSSVFFSSWEDDVV----AANLDG- 600 V E GGLH++GT RH ++R+DNQLRGR+GRQGD GSS F+ S ED ++ + + G Sbjct: 547 AVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGM 606 Query: 601 -NKLPMETDEDGQIVSAKAAGLLDHAQRVAEGRMLDVHANTWRYNQLIAQQRAIIVDRRN 659 KL M+ E I + +AQR E R D+ Y+ + QR I +RN Sbjct: 607 MRKLGMKPGE--AIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRN 664 Query: 660 TLLRTATAREELAD-------------LAPKRYKEL------------------------ 682 LL + E + + P+ +E+ Sbjct: 665 ELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWL 724 Query: 683 ---SETVSEDRLEKIC-----------------------RMIMLYHLDRGWADHLAYLAD 716 E E E+I + +ML LD W +HLA + Sbjct: 725 DKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDY 784 Query: 717 IRESIHLRALGRQNPLDEFHRMAVDAFASLAAD 749 +R+ IHLR +++P E+ R + FA++ Sbjct: 785 LRQGIHLRGYAQKDPKQEYKRESFSMFAAMLES 817
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 7e-14 Identities = 26/202 (12%), Positives = 68/202 (33%), Gaps = 10/202 (4%) Query: 6 NRHELRRRSTHEALRRAALKSFACKGFAQVTVTELAREAGVTERTFFRHFPTKEAVLFQD 65 + + + T + + AL+ F+ +G + ++ E+A+ AGVT + HF K + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 66 YENQLEWLAQALAQRPVSEP------LFDAVLASVAAFPHDLEVVRQAATARSELISADR 119 +E + + + P L + ++ + + + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 120 IANHLRVVQSSFAQVLTAFVRDRYADVANVDLVA----EVAGATIAAALVVAVENWGRNG 175 +A + ++ + + + L A A + + +ENW Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 176 CAVDLGELVAASLDLVRSGLAP 197 + DL + + ++ Sbjct: 183 QSFDLKKEARDYVAILLEMYLL 204
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 6e-04 Identities = 25/80 (31%), Positives = 33/80 (41%) Query: 215 GNVGNGNNGFGNFGSGNLGSGNFGSGNFGSSNIGASNLGSNNFGFGNLGSFNNGFANIGA 274 G G G+N + SGN+ G G G G ++ G+ NN G GS + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 275 GNFGFGNNGNNNIGIGLNGN 294 GN G N G G N + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82
>cloacin#Cloacin signature. Length = 551 Score = 38.2 bits (88), Expect = 5e-06 Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 63 GPSGTGGPEGGGGGVPGGPTGSGGPGGGGGSIPGGPTGGGGPGGGGGTIPGVGGGGG-GP 121 G G G + GGPTG G GGG G + GGG G+ GGG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTG-LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 122 GGGGGCIGNICGS 134 GGG G G G+ Sbjct: 65 GGGNGNSGGGSGT 77 Score = 34.3 bits (78), Expect = 1e-04 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 5/73 (6%) Query: 54 ATESSPAPGGPSGTGGPEGGGGGVPGGPTGSGGPGGGGGSIPGGPTGGGGPGGGGGTIPG 113 A +S G G GG G + + GGG GS G G GGG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN---- 68 Query: 114 VGGGGGGPGGGGG 126 G GGG G GG Sbjct: 69 -GNSGGGSGTGGN 80 Score = 29.7 bits (66), Expect = 0.004 Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 50 SSSPATESSPAPGGPSGTGGPEGGGGGVPGGPTGSGGPGGGGGSIPGGPTGGGGPGGGGG 109 S+S P G G G +G G P G GG G G G G GG G G Sbjct: 15 STSGNINGGPTGLGVGG-GASDGSGWSSENNPWG-GGSGSGIHWGGGSGHGNGGGNGNSG 72 Query: 110 TIPGVGGGG 118 G GG Sbjct: 73 GGSGTGGNL 81 Score = 27.0 bits (59), Expect = 0.025 Identities = 32/99 (32%), Positives = 35/99 (35%), Gaps = 6/99 (6%) Query: 25 GGGENKGPSSTTPTTTPTTT---VPSSPSSSPATESSPAP-GGPSGTGGPEGGGGGVPGG 80 G G N G ST+ T V S S P GG SG+G GGG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG--HG 63 Query: 81 PTGSGGPGGGGGSIPGGPTGGGGPGGGGGTIPGVGGGGG 119 G G GGG G + P G G GG Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 33.6 bits (77), Expect = 0.001 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 12/83 (14%) Query: 136 GVLGIADLATNKKVTK---DTVFDIGSVSKQFTATAVLLLINEGRLTLDDPLAHYVPDLP 192 G++ + DLA+ + +T D F + S K AVL ++ G L+ + + DL Sbjct: 41 GMIEM-DLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLV 99 Query: 193 DWS--------SAVTVAQLMHHT 207 D+S +TV +L Sbjct: 100 DYSPVSEKHLADGMTVGELCAAA 122
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 34.3 bits (79), Expect = 9e-04 Identities = 14/29 (48%), Positives = 18/29 (62%) Query: 371 TVGGARCLGRDQDLGSLEVGKLADIALWQ 399 T+ A G ++GSLEVGK AD+ LW Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLVLWN 438 Score = 30.1 bits (68), Expect = 0.022 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 19/74 (25%) Query: 17 LVIDRVSIATVDPKAAEFSEGHIIVEDDLIVAVGDGPAPEV---------PGATVIDGRG 67 L++D I D I ++D I A+G P++ PG VI G G Sbjct: 76 LILDHWGIVKAD----------IGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEG 125 Query: 68 CLATPGLVNTHEHL 81 + T G +++H H Sbjct: 126 KIVTAGGMDSHIHF 139
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.014 Identities = 16/43 (37%), Positives = 19/43 (44%) Query: 22 PVTPPPLPRPVTFDQRWSDLTFVHWPVLPDSVAHMYPPGTRPD 64 P P P PRPV + W + V +P S H P G PD Sbjct: 118 PPRPEPPPRPVVEKECWETIQPVPEHAVPPSFWHPAPKGREPD 160
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 143 bits (361), Expect = 7e-44 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 14/256 (5%) Query: 9 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCD 68 + GK A ITGA+ GIG+ VA A GA +A + + L+ V + A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 69 VTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQ 128 V + + ++ E+G IDI V AG++ + + EE++ N TGVF ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 129 AAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRV 188 + ++ M+D+ G+I+T S + ++ Y +SKAA V TK + +ELA + IR Sbjct: 126 SVSKYMMDRR-SGSIVTVGSNPAGVPRT--SMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 189 NSVSPGYIRTELVEPL-----------ADYHALWEPKIPLGRMGRPEELTGLYLYLASAA 237 N VSPG T++ L ++ IPL ++ +P ++ L+L S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 238 SSYMTGSDIVIDGGYT 253 + ++T ++ +DGG T Sbjct: 243 AGHITMHNLCVDGGAT 258
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 34.6 bits (79), Expect = 7e-04 Identities = 24/114 (21%), Positives = 32/114 (28%), Gaps = 15/114 (13%) Query: 365 VPPPALPVAAPAAPPVALTPNVPPTPPAPAPVDASTLTLTQAPPPPPSTAPPPVSGAGLG 424 P P P PV + P P P PV P A P + A Sbjct: 77 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTA--- 133 Query: 425 VGMENFGYMVGGLGADAKSAARASARKKAPRPDGAEVPVVAPAPSEPARSQRRR 478 A A ++ ++ PR + P PAR+Q R Sbjct: 134 ------PARPTSSTATAATSKPVTSVASGPR------ALSRNQPQYPARAQALR 175
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 1/115 (0%) Query: 140 GDGGAGGSGATGQVGG-NGGAAGLLGSGGAGGAGGGSTVGNGGAGGVGGTGGWLSGSGGV 198 GDG +GA G NGG GL GGA G S+ N GG G W GSG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 199 GGAGGATSDVGAAGGAGGDGGAGGLLGAGGTGGAGGAGRLGSGATGGAGGAGGAG 253 G G S G+ G A + GAG L + GA A A Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 37.0 bits (85), Expect = 4e-04 Identities = 38/103 (36%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 535 SGAAGSGIAGGDGGAAGLIGTGGTGGAGAGSASDDGGGGGSGGAGGWLSGAG-GVGGVGG 593 SG G G G +G I G TG G ASD G G SG+G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 594 FSLTGGTGGSGGAGGAGGLLGAAGLGGAGGAGVNGDGGGGGSG 636 GG G SGG G GG L A A G G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.2 bits (83), Expect = 5e-04 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 12/109 (11%) Query: 650 GGDGGAGGASESANGGAGGAGGHAGAFGGPGGAGGSGGFGDVAGGIGGTGGNAGTLFGSG 709 G + GA S + NGG G G GA G G + + +G +G GG +G G+G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH--GNG 65 Query: 710 GAGGDGGFGLSVVGGHGGDGGNAGLLFSSAGSGGFGGSSTKTAGDGGMG 758 G G+ GG G GGN L + A FG + T G GG+ Sbjct: 66 GGNGNS-------GGGSGTGGN---LSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.2 bits (83), Expect = 6e-04 Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 7/125 (5%) Query: 388 GGVGGSSTGGVGGQGGT--GGRAGLLIGNAGAGGAGGEGTAAGGDGGNGGNGVLIGNGGN 445 GG G G G GG GL +G + G+G GG+G G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 446 AGTGGAGPSNGGNGVGGTGGVLLGADGFNAPASSSP-----LHSLQQQALTAVNAPIQAA 500 GG G S GG+G GG + F PA S+P S+ AL+A A I AA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 501 TGRPL 505 P Sbjct: 123 LKGPF 127 Score = 35.8 bits (82), Expect = 7e-04 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 11/114 (9%) Query: 618 LGGAGGAGVNGDGGGGGSGGAGGLLGGLVGAGGGDGGAGGASESANGGAGGAGGHAGAFG 677 + G G G N GG G VG G DG + + GG G+G H G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 678 GPGGAGGSGGFGDVAGGIGGTGGNAGTL-------FGSGGAGGDGGFGLSVVGG 724 G G GG+G +GG GTGGN + F + G GG +S+ G Sbjct: 61 GHGNGGGNGN----SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 34.7 bits (79), Expect = 0.002 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 771 GAGGFGGVVGAGDGGSGGNGGAGGQLLGIGGAGGAGGQSLSSGVGGDGGTGGNAVLIGNG 830 G G G GA NGG G +G G + G+G S ++ GG G+G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 831 GNGGNGGNGGNVGTGTPGAGGS 852 GNGG GN G G+GT G + Sbjct: 63 GNGGGNGNSGG-GSGTGGNLSA 83 Score = 34.3 bits (78), Expect = 0.002 Identities = 37/107 (34%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 120 NGANGAPGTGANGGDGGWLLGDGGAGGSGATGQVGGNGGAAGLLGSGGAGGAGGGSTVGN 179 N + NGG G +G G + GSG + + GG +G G GG+G G+ GN Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS-GIHWGGGSGHGNGGGN 68 Query: 180 GGAGGVGGTGGWLSGSGGVGGAGGATSDVGAAGGAGGDGGAGGLLGA 226 G +GG GTGG LS G AGG AG L A Sbjct: 69 GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 34.3 bits (78), Expect = 0.002 Identities = 25/90 (27%), Positives = 29/90 (32%) Query: 728 DGGNAGLLFSSAGSGGFGGSSTKTAGDGGMGGAAGWLGFGGAGGAGGFGGVVGAGDGGSG 787 +GG GL S G G SS GG G W G G G GG G G G Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 788 GNGGAGGQLLGIGGAGGAGGQSLSSGVGGD 817 + A G G L+ + Sbjct: 81 LSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 34.3 bits (78), Expect = 0.003 Identities = 37/105 (35%), Positives = 40/105 (38%), Gaps = 4/105 (3%) Query: 235 AGRLGSGATGGAGGAGGA--GGPWAGLVGAGGGDGGIGGMGQDNGGAGGTGGSAGVLGGP 292 +G G G GA G GGP VG G DG G +N GG GS GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGG 59 Query: 293 GGAGGTGGYGGVTGGSGGSGGDAGGMFGVRGLFGTGGAGGTGGFG 337 G G GG G GGSG G + V F G GG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.5 bits (76), Expect = 0.004 Identities = 39/107 (36%), Positives = 47/107 (43%), Gaps = 5/107 (4%) Query: 528 GDGGAGGSGAAGSGIAGGDGGAAGLIGTGGTGGAGAGSASD-DGGGGGSGGAGGWLSGAG 586 G G G+ + I GG G G G + G+G S ++ GGG GSG G SG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGV--GGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 587 GVGGVGGFSLTGGTGGSGGAGGAGGLLGAAGLG--GAGGAGVNGDGG 631 GG G GTGG+ A A G L GAGG V+ G Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.5 bits (76), Expect = 0.004 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 2/118 (1%) Query: 582 LSGAGGVGGVGGFSLTGGT--GGSGGAGGAGGLLGAAGLGGAGGAGVNGDGGGGGSGGAG 639 +SG G G G T G GG G G GG +G G G G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 640 GLLGGLVGAGGGDGGAGGASESANGGAGGAGGHAGAFGGPGGAGGSGGFGDVAGGIGG 697 G G G G G + SA G A + G GG S G ++ I Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 33.5 bits (76), Expect = 0.004 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 508 NGAPGATGSGASGSPGGWLLGDGGAGGSGAAGSGIAGGDGGAAGLIGTGGTGGAGAGSAS 567 N +T +G P G +G G + GSG + G G +G+ GG+G G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG-- 67 Query: 568 DDGGGGGSGGAGGWLSGAGGVGGVGGFSLTGGTGGSGGAGGAGGLLGAA 616 +G GG G GG LS G +L+ G + G L AA Sbjct: 68 -NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 33.1 bits (75), Expect = 0.005 Identities = 36/126 (28%), Positives = 43/126 (34%), Gaps = 5/126 (3%) Query: 554 GTGGTGGAGAGSASDDGGGGGSGGAGGWLSGAGGVGGVGGFSLTGGTGGSGGAGGAGGLL 613 G G GA + S + +GG G G GG G+G GGSG GG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW-----SSENNPWGGGSGSGIHWGGGS 60 Query: 614 GAAGLGGAGGAGVNGDGGGGGSGGAGGLLGGLVGAGGGDGGAGGASESANGGAGGAGGHA 673 G GG G +G GG S A + G G S SA + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIM 120 Query: 674 GAFGGP 679 A GP Sbjct: 121 AALKGP 126 Score = 32.4 bits (73), Expect = 0.010 Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 18/117 (15%) Query: 261 GAGGGDGGIGGMGQDNGGAGGTGGSAGVLGGPGGAGGTGGYGGVTGGSGGSGGDAGGMFG 320 G G G G NGG G G G G G + +GG +G GG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG------- 58 Query: 321 VRGLFGTGGAGGTGGFGSTSGAAGGTGGDGGLFFSSGGAGGEGGAGATAGPGGGGGA 377 G G GG SG GTGG+ S+ A G A + PG GG A Sbjct: 59 -------GSGHGNGGGNGNSGGGSGTGGNL----SAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.010 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 154 GGNGGAAGLLGSGGAGGAGGGSTVGNGGAGGVGGTGGWLSGSGGVGGAGGATSDVGAAGG 213 GG+G +G GG T G G G+ GW S + GG G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS-GWSSENNPWGGGSGSGIHWGGGSG 61 Query: 214 AGGDGGAGGLLGAGGTGGAGGAGRLGSGATGGAGGAGGAGGP 255 G GG G G GTGG A A GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 31.2 bits (70), Expect = 0.019 Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 326 GTGGAGGTGGFGSTSGAAGGTGGDGGLFFSSGGAGGEGGAGATAGPGGGGGAGGLLFSDG 385 G G G G STSG GG GL G + G G + GGG G+G Sbjct: 3 GGDGRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 386 GVGGVGGSSTGGVGGQGGTGGRA 408 G G GG+ G G G A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSA 83 Score = 31.2 bits (70), Expect = 0.021 Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 2/110 (1%) Query: 599 GTGGSGGAGGAGGLLGAAGLGGAGGAGVNGDGGGGGSGGAGGLLGGLVGAGGGDGGAGGA 658 G G G GA G G G G G G GG G+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 659 SESANGGAGGAGGHAGAFGGPGGAGGSGGFGDVAGGIGGTGGNAGTLFGS 708 GG G +GG +G G FG A G GG A ++ Sbjct: 63 GNG--GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 30.5 bits (68), Expect = 0.034 Identities = 39/141 (27%), Positives = 46/141 (32%), Gaps = 9/141 (6%) Query: 192 LSGSGGVGGAGGATSDVGAAGGAGGDGGAGGLLGAGGTGGAGGAGRLGSGATGGAGGAGG 251 +SG G G GA S G G G GG G + G+G + G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGG----GASDGSGWSSENNPWGGGSGSGIHW 56 Query: 252 AGGPWAGLVGAGGGDGGIGGMGQDNGGAGGTGGSAGVLGGPG-GAGGTGGYGGVTGGSGG 310 GG G GG G G G GG + G P G GG Sbjct: 57 GGGSGHG----NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112 Query: 311 SGGDAGGMFGVRGLFGTGGAG 331 S A M ++G F G G Sbjct: 113 SAAIADIMAALKGPFKFGLWG 133 Score = 30.5 bits (68), Expect = 0.034 Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 12/105 (11%) Query: 164 GSGGAGGAGGGSTVGNGGAGGVGGTGGWLSGSGGVGGAGGATSDVGAAGGAGGDGGAGGL 223 G G GA S NGG G+G GG G+G ++ + GG+G GG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGG------ASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 224 LGAGGTGGAGGAGRLGSGATGGAGGAGGA----GGPWAGLVGAGG 264 G G GG G +G G TGG A A G P GAGG Sbjct: 60 SGHGNGGGNGNSG--GGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 50.0 bits (119), Expect = 6e-10 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 82 QVHTLQAGDGPVVPGTARVSVCYMGVNGRDGSVFDSSYERGAPVVFPLNGVVPGFQKAIA 141 Q + AG G + V+V Y G DG+VFDS+ + G P F ++ V+PG+ +A+ Sbjct: 129 QYKIIDAGTGAKPGKSDTVTVEYTG-TLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQ 187 Query: 142 GQKVGSTVAVAMTSADGYPDGQPSAGIRPGDTLVFAIKVLS 182 GST V + + Y I P +TL+F I ++S Sbjct: 188 LMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLIS 228
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.4 bits (120), Expect = 6e-10 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 16/195 (8%) Query: 7 RQRMVAGAAEMISRRGLNATSVRELAKHTQAPLGSTYHYFPGGKYDLATEAVRWADDLTV 66 RQ ++ A + S++G+++TS+ E+AK G+ Y +F K DL +E ++ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHF-KDKSDLFSEIWELSESNIG 71 Query: 67 GVLARELAAGPQAGLSAFLAMWRKIVIDSNFHAGCPVLAVSVEDLPEEHHA---PRRAAA 123 + A P LS + ++ + +L + E ++A Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 124 TAFQRWTSMLADSLRDAGAAEQ-----DAQQVATLIVASVEGTVAMCRAQQSIAPLDLVT 178 + +L+ A+ ++ A ++ + G + + Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME-----NWLFAPQSFD 186 Query: 179 A--QLGRAIDAVLPG 191 + + +L Sbjct: 187 LKKEARDYVAILLEM 201
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 136 bits (344), Expect = 4e-36 Identities = 84/414 (20%), Positives = 169/414 (40%), Gaps = 20/414 (4%) Query: 44 VLLVAAFGAFLAFLDSTIVNVAFPDIQRYFHSGISDLSWVLNAYNIVFAAFLVAAGKLAD 103 +L+ +F + L+ ++NV+ PDI F+ + +WV A+ + F+ GKL+D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 104 LLGRKRLFVYGVVLFTIASGLCAAADS-VEQLVAFRVLQGIGAAVLVPASLGLVVESFPA 162 LG KRL ++G+++ S + S L+ R +QG GAA + +V P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 163 ERRAHGVNLWGAAGAIAAGLGPPIGGALVEALNWRWVFLVNLPLGIVAVLAARRALVESR 222 E R L G+ A+ G+GP IGG + ++W ++ L+ + + I+ V + L + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKE- 192 Query: 223 ACGRRRVP-DVRGAAMLATALGLLTLGLIKGPDWGWSSLPAIGSLVAAALAMIGFVMSSR 281 R + D++G +++ + L ++ +I L+ + L+ + FV R Sbjct: 193 --VRIKGHFDIKGIILMSVGIVFFMLF---------TTSYSISFLIVSVLSFLIFVKHIR 241 Query: 282 NHPTPLVEPALLRIRSFVAGSALTAIASAGFYAYLLTHVLFLNYVWGYTLLQAGLAVC-P 340 P V+P L + F+ G I ++ + V + + G + P Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 341 AAIIAAVTAGLLGRVADRHGYRVIIGVGALIWAGSLLWYLTCVGTTPNFLGEWLPGQILQ 400 + + + G + DR G ++ +G + S L ++ I+ Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFL----TASFLLETTSWFMTIIIVF 357 Query: 401 GIGVGAAFPLLGSAALAGLASGSSYATASAVTGTIRQVGAVIGVALLVILVGTP 454 +G + + S ++ ++ + G+A++ L+ P Sbjct: 358 VLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 149 bits (377), Expect = 2e-41 Identities = 79/413 (19%), Positives = 166/413 (40%), Gaps = 19/413 (4%) Query: 39 VCVLGSIMTMVDTSVVTVAQRTFVDTFGSTQAVVAWTITGYTLALAAVVPLAGWAADRFG 98 +C+L S ++++ V+ V+ + F A W T + L + + G +D+ G Sbjct: 19 LCIL-SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLG 77 Query: 99 TKRMFMGSILVFTLSSLLCAIAPNIA-LLIASRVVQGLGGGMLAPLALTIVNREAGPKRV 157 KR+ + I++ S++ + + LLI +R +QG G L + +V R + Sbjct: 78 IKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENR 137 Query: 158 GRVMAVLGIPGVLAPAFGPALGGWLIDSYSWQWIFWVNLPVGVVAVGLAAVVFPRDTPAP 217 G+ ++G + GPA+GG + W ++ +P+ + + + Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEVRI 195 Query: 218 SETFDVVGMLLLSPGLPAFLYGMSEIPIYGTVADRHVWVPAGIGIALIVGFMFHALYRAD 277 FD+ G++L+S G+ F+ + + + + F+ H + Sbjct: 196 KGHFDIKGIILMSVGIVFFMLF----------TTSYSISFLIVSVLSFLIFVKHIR-KVT 244 Query: 278 KPLIDLRLLTNRALTLANVAMFLYIVSTFGAGVLFPSYFQQLLDHTPLQAGMS-LLPRGI 336 P +D L N + + + + G + P + + + + G + P + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 337 GAALAVPLAGALVDRRGARGVLVIGVTLIATGMGVFAFGVATQRDYLPMLLIGLTILGMG 396 + + G LVDRRG VL IGVT ++ +F + T + I + + G Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT---SWFMTIIIVFVLGG 361 Query: 397 MGCTRMPLVAVAMQSLAPNQIARGSTLIKVNQQMAAAVGTALMSVILTSQLNN 449 + T+ + + SL + G +L+ ++ G A++ +L+ L + Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLD 414
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 1e-04 Identities = 38/120 (31%), Positives = 40/120 (33%), Gaps = 11/120 (9%) Query: 168 GSGGAGGAGGIDGGGGAGTGGTGGRGGLIFGDAGAGGQGGLGFAPNPNGGGGGAGGTGGA 227 G G G G G GG G G GA G NP GGG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV----GGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 228 GGLFGAGGPGGNGAPSVSGGGSGDGGDGGRGGVFGPGGRGGDGAPNPGGGSPGSGGNGGA 287 G G GG GN G G G G V P G PG G + GA Sbjct: 59 GSGHGNGGGNGN-------SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 37.0 bits (85), Expect = 3e-04 Identities = 27/81 (33%), Positives = 33/81 (40%) Query: 237 GGNGAPSVSGGGSGDGGDGGRGGVFGPGGRGGDGAPNPGGGSPGSGGNGGAGGLFGAGGA 296 GG+G +G S G G G GG DG+ +P GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 297 GGNGAPDVGGGSPGSGGNGGA 317 G G GG G+GGN A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 35.8 bits (82), Expect = 6e-04 Identities = 38/109 (34%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 198 GDAGAGGQGGLGFAPNPNGGGGGAGGTGGAGGLFGAGGPGGNGAPSVSGGGSGDGGDGGR 257 GD G + N NGG G G GGA + G G + + GGGSG G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGA-----SDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 258 GGVFGPGGRGGDGAPNPGGGSPGSGGNGGAGGLFGAGGAGGNGAPDVGG 306 G G GG G+ GG G+GGN A A G P GG Sbjct: 59 GSGHGNGGGNGNS-----GGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 35.1 bits (80), Expect = 9e-04 Identities = 27/83 (32%), Positives = 32/83 (38%) Query: 267 GGDGAPNPGGGSPGSGGNGGAGGLFGAGGAGGNGAPDVGGGSPGSGGNGGAGGLFFGDGG 326 GGDG + G SG G G GG +G+ +P GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 327 AGGNGAPNVGGGSPGAGGNGGDA 349 G G N GGGS G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVA 85 Score = 34.7 bits (79), Expect = 0.001 Identities = 25/72 (34%), Positives = 30/72 (41%) Query: 124 NGANGAPGTGANGEAGGILFGSGGSGGSGGVGQNGGNGGDAGLFGSGGAGGAGGIDGGGG 183 N + NG G+ G G S GSG +N GG +G G G G GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 184 AGTGGTGGRGGL 195 GG+G G L Sbjct: 70 NSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.007 Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 7/120 (5%) Query: 479 GVGGAGGAAALSGAGNGGTGGAGGLFFGVGGAGGAAPLFGGGTGGTGGAGGLLFGLGGAG 538 G G GA + SG NGG G +G GGA+ G + GG G+ G Sbjct: 6 GRGHNTGAHSTSGNINGGPTG-------LGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 539 GNAPVFGGGSGGTGGRAGLIGIGGAGGSSSVFAGGDGGAGGAGGTFIGFGGAGGDGGVSG 598 G+ GGG+G +GG +G G A + F GAGG + ++ Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 32.4 bits (73), Expect = 0.007 Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 1/115 (0%) Query: 430 SAGRSVGTIGSVGGAGGNGGLFGTGGAGGSGGQDGYNYGGNGGAGGLLFGVGGAGGAAAL 489 S G G GN TG G G DG + G G G G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 490 SGAGNGGTGGAGGLFFGVGGAGGAAPL-FGGGTGGTGGAGGLLFGLGGAGGNAPV 543 G G G GG G + AAP+ FG T GAGGL + +A + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Score = 32.0 bits (72), Expect = 0.009 Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 6/113 (5%) Query: 397 GGDNQNTNTGPGGVGGAGGDAGLFSGAIGGAGGSAGRSVGTIGSVGGAGGNGGLFGTGGA 456 GGD + NTG G G GGA +G S GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 457 GGSGGQDGYNYGGNGGAGGLLFGVGGAGGAAALSGAGNGGTGGAGGLFFGVGG 509 G GG GN G G G A A G T GAGGL + Sbjct: 63 GNGGG------NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 31.2 bits (70), Expect = 0.013 Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 5/109 (4%) Query: 559 GIGGAGGSSSVFAGGDGGAGGAGGTFIGFGGAGGDGGVSGNGGAGGKAGLIGVGGNGGNG 618 G G G+ S +GG G G G+G + GG G G G GNG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 619 GNGGNGGAGGDAQLIGIGGNGGNGGDGQLGGPGTGGTGGTGGTLLGLNG 667 G GN G G G GGN G T G GG + ++ Sbjct: 66 GGNGNSGGGS-----GTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 31.2 bits (70), Expect = 0.013 Identities = 33/103 (32%), Positives = 36/103 (34%), Gaps = 9/103 (8%) Query: 217 GGGGAGGTGGAGGLFGA--GGPGGNGAPSVSGGGSGDGGDGGRGGVFGPGGRGGDGAPNP 274 GG G G GA G GGP G G V GG S G +G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG---VGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 275 GGGSPGSGGNGGAGGLFGAGGAGGNGAPDVGG----GSPGSGG 313 G G G GG G AP G +PG+GG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.8 bits (69), Expect = 0.018 Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 296 AGGNGAPDVGGGSPGSGG-NGGAGGLFFGDGGAGGNGAPNVGGGSPGAGGNGGDAGLFGA 354 +GG+G G SG NGG GL G G + G+G + +P GG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN--NPWGGGSGSGIHWGGG 59 Query: 355 GGAGGRGGNNLANPATDGGAGGAGGNGGAGGLFAGAGGPGGQG 397 G G GGN + + G + F PG G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.1 bits (67), Expect = 0.030 Identities = 32/108 (29%), Positives = 35/108 (32%), Gaps = 11/108 (10%) Query: 283 GNGGAGGLFGAGGAGGNGAPDVGGGSPGSGGNGGAG----GLFFGDGGAGGNGAPNVGGG 338 G G G GA GN G G G + G+G +G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 339 SPGAGGNGGDAGLFGAGGAGGRGGNNLANPATDGGAGGAGGNGGAGGL 386 G G GG G GGN A A A GAGGL Sbjct: 63 GNGGGNGNS-------GGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 29.7 bits (66), Expect = 0.039 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 8/87 (9%) Query: 571 AGGDGGAGGAGGTFIGFGGAGGDGGVSGNGGAGGKAGLIGVGGNGGNGGNGGNGGAGGDA 630 +GGDG G GG G+ GGA G+G + N GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGAS--------DGSGWSSENNPWGGGSGSG 53 Query: 631 QLIGIGGNGGNGGDGQLGGPGTGGTGG 657 G G GNGG G G+G G Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGN 80
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 30.4 bits (68), Expect = 5e-04 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 10/92 (10%) Query: 7 WHWAILAVVVIVLFGAKKLPDAARSLGKSMRIFKSEMREMQSETKAEPSAIE-------- 58 ++ ++ +V+ G ++LP A +++ +R +S +Q+E E E Sbjct: 7 SELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKV 66 Query: 59 --TNTANPTPVQSQRIDPAAATGQDQTEARPA 88 + N TP +D + + A Sbjct: 67 EKASLTNLTPELKASMDELRQAAESMKRSYVA 98
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 51.6 bits (123), Expect = 1e-08 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 9/163 (5%) Query: 1740 VLITGGTGMVAAALARHLVSSHGVRHLVLVSRRGDAAAGASKLVDELTAAGATVRVVACD 1799 ITG + A+AR L S H+ V + K+V L A D Sbjct: 11 AFITGAAQGIGEAVARTLASQGA--HIAAVDYNPEKL---EKVVSSLKAEARHAEAFPAD 65 Query: 1800 VADPAAVSRLMNQLPEQCPPLSAVIHAAGTLDDALITSLTPQRVDAVLRAKVDGAWNLHE 1859 V D AA+ + ++ + P+ +++ AG L LI SL+ + +A G +N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 1860 AT----RDLGLSAFVLCSSIAATLGAPGQANYAAGNAFLDALA 1898 + D + V S A + A YA+ A Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFT 168
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.8 bits (80), Expect = 0.005 Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 35/148 (23%) Query: 2393 TVLITGGTGMVASVLARHLVSSYGVKHVVLASRRADATAGVAEL------------VADL 2440 L+TG G + +++ L+ G+ L + L Sbjct: 2 KYLVTGAAGFIGFHVSKRLL------------EAGHQVVGIDNLNDYYDVSLKQARLELL 49 Query: 2441 AAAGAAVAVVACDVADRAAVTRLLDHVSTCHPPLTGVIHAAGTLDDAVIASLTPDRVDAV 2500 A G D+ADR +T L V + AV SL A Sbjct: 50 AQPG--FQFHKIDLADREGMTDLFASGHFER-----VFISPH--RLAVRYSLENPH--AY 98 Query: 2501 LRAKVDGAWNLHEATRHLGLSMFVLCSS 2528 + + G N+ E RH + + SS Sbjct: 99 ADSNLTGFLNILEGCRHNKIQHLLYASS 126
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 119 bits (301), Expect = 2e-31 Identities = 78/408 (19%), Positives = 157/408 (38%), Gaps = 18/408 (4%) Query: 39 IAAIMANLDISIVTVAQRTFTVAFHSTQATVAWTVAGYMLGMATATPMTGWAADRLGAKR 98 I + + L+ ++ V+ F+ A+ W +ML + T + G +D+LG KR Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 99 LFMGAVATFTLGSMLCA-SAPNIGLLITFRVVQGIGGGVLGPLVLAIVTHQAGPRRLGRL 157 L + + GS++ LLI R +QG G LV+ +V G+ Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 158 LAVGAIPMLTAPMLGPILGGWLIDSYGWQWIFLINVPAGLLAFGLAAILVPEDPPKPSER 217 + + +GP +GG + W +L+ +P + + + + + Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGH 198 Query: 218 FDFIGMLLLLPGIAMLLLGVSAIPGSGTVTDHRVWVPAISGAVLITAFALHAWYRTDHPL 277 FD G++L+ GI +L ++ I + F H + P Sbjct: 199 FDIKGIILMSVGIVFFMLFTTS----------YSISFLIVSVLSFLIFVKHI-RKVTDPF 247 Query: 278 IDLRLFTDRVVRLANLALLLYVAGAAGASLLLPSYFQQLLHQTPMRSG-LMMVPIGFGAM 336 +D L + + L + AG ++P + + + G +++ P + Sbjct: 248 VDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVI 307 Query: 337 LTMPLTGAFMDSRGPRKVVLIGLTLIAAGTGTFVFGVANEADYLPTLLAGLTIAGMGLGC 396 + + G +D RGP V+ IG+T ++ T F + + T++ + GL Sbjct: 308 IFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF-LLETTSWFMTIIIVFVL--GGLSF 364 Query: 397 TGLLLAASVMRVLAPHQIARGSALISVNQQISGSIGAALMSMILTNQF 444 T +++ V L + G +L++ +S G A++ +L+ Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.5 bits (172), Expect = 2e-16 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 8/201 (3%) Query: 18 AVVTGAGSGIGRAFAVELARRGGRVVCADKDPITAKESAELVRQAGGEGFDVVCDVTDLE 77 A +TGA GIG A A LA +G + D +P ++ ++ DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 78 QVRNLADASEDWFGKAASLVINNAGIGAGGNRIGAT---SVEDWNAAISVNLWGVIYGCE 134 + + E G LV N AG+ R G S E+W A SVN GV Sbjct: 71 AIDEITARIEREMGPIDILV-NVAGV----LRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 135 TFVPRLRSNGRGGVINVASAASFGSAPRMGAYNVSKAGVLALSETLAAELSGTNVNVTVL 194 + + G ++ V S + M AY SKA + ++ L EL+ N+ ++ Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 195 CPTFVKTNIAKNPQIEESAAK 215 P +T++ + +E+ A+ Sbjct: 186 SPGSTETDMQWSLWADENGAE 206
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 7e-12 Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 15/180 (8%) Query: 14 RTGAERRAERRQQLIEAATEIWSESGWAAVTMRGVCARTGLNDRYFYEDFKTREDLLVAA 73 R + E RQ +++ A ++S+ G ++ ++ + G+ Y FK + DL Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 74 WDGVRNDMLGEVSALFDERVDRPPIETITAAIAIVVDRIARDPGRAHIL-----LAQHVG 128 W+ +GE+ + + P+ + + V++ + R ++ + VG Sbjct: 63 WEL-SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 129 SSPLQDRRAVALQEAT-----QLVVEA-SRPHLREDADETALRMDTLVAVGGFVEVITAW 182 + + L + Q + L D + + G ++ W Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI---IMRGYISGLMENW 178
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 3e-10 Identities = 26/177 (14%), Positives = 65/177 (36%), Gaps = 13/177 (7%) Query: 14 QRDAQRRALLIDAAVALMGKQGAAACTVTAVCTESGVTSRYFYQQFRDRDALLRAMFTKI 73 Q + R ++D A+ L +QG ++ ++ + +GVT Y F+D+ L ++ Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 74 STTFQAVITKAIPDDTVAPQELAYAPIKALVQMIENDPSMARILFV------ESGAEPLL 127 + + + P + + +++ + ++ + G ++ Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 128 RQLRSELMSEFAELVLREARLHLDIPSEVIQVADLAATYGVGGLFEILRRWIDGQLN 184 +Q + L E + + + + I+ L A I+R +I G + Sbjct: 127 QQAQRNLCLESYDRIEQTLK-------HCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.4 bits (146), Expect = 1e-13 Identities = 20/114 (17%), Positives = 38/114 (33%) Query: 11 RRHIREQVLRATRELTIEKGWEQVRVSEVAELVGVSRPTLYKEFGDKQGLGDALVVAEGQ 70 + R+ +L L ++G + E+A+ GV+R +Y F DK L + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 71 RFLEGIHAILAEHTGDVQGGITAAVRFTLREAEASPLLKSVLTSSHSGDDRAGA 124 E A+ GD + + L + ++ + G Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.9 bits (168), Expect = 1e-16 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 7/169 (4%) Query: 10 DRDSARDRLLDAAERCLESCGVVGTTMEDIGRTAGVSRATVYRYFPNREAVMSGVIIRAA 69 + R +LD A R GV T++ +I + AGV+R +Y +F ++ + S + + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 70 ERYLDRINPRIAE-----HTDLGSALVDFVEYTVEAARREEIIGLLFGSDEELAGVGLAA 124 + A+ + L L+ +E TV RR ++ ++F E + + + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 125 GTSTSLFELVTEFLRPIFRRHWS--YVEPGVSVDDAAEWVLRTILSLLT 171 +L + + + + + AA + I L+ Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 51.0 bits (122), Expect = 2e-08 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 30/260 (11%) Query: 175 PPGVKVYVTGPAALQADLI-HSAERTVRTIKIATFTVIIVLMLFFFRSVPTVLVLLGVVG 233 P G+KV + S V+T+ A V +V M F +++ L+ V Sbjct: 318 PQGMKVLYPYD---TTPFVQLSIHEVVKTLFEAIMLVFLV-MYLFLQNMRATLIPTIAVP 373 Query: 234 IQLSAATGVAAVIGYLGVVELSTFAVNLV--VAMAIATGT--DYAIFLIGRYQEARA-AG 288 + ++G ++ +++N + M +A G D AI ++ + Sbjct: 374 V---------VLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDK 424 Query: 289 VDRESAYYEMWHGTAHVVLASGLTIAGAALCMSL---TRMPYLQSLGVPTAVAMLVALSV 345 + + A + ++ + ++ + M+ + + + AM +++ V Sbjct: 425 LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484 Query: 346 ALTLGPAAVTVASRFGLLEPKRAIR------IRFWRRIGTAVVRWPAPILLASLAA--AL 397 AL L PA + E + IL ++ Sbjct: 485 ALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIY 544 Query: 398 VGLIALPFYQPSYNDRRYIP 417 ++A ++P Sbjct: 545 ALIVAGMVVLFLRLPSSFLP 564 Score = 34.0 bits (78), Expect = 0.003 Identities = 40/242 (16%), Positives = 83/242 (34%), Gaps = 36/242 (14%) Query: 707 DGKSLRMIISHRGDPASAEGISR---------VDPIKLAAIEALKGTPLENAKVSLGGTA 757 G++ +I G PA+ GI IK A + L+ + KV Sbjct: 271 GGENYNVIARINGKPAAGLGIKLATGANALDTAKAIK-AKLAELQPFFPQGMKVLYPYDT 329 Query: 758 SVYHDLS-EGTRYDLVIAVIATVCLIFAIMLLITRSLVAAMVIVGTVLLSLGASVGLSVL 816 + + LS L A++ L+F +M L +++ A ++ V + L + + Sbjct: 330 TPFVQLSIHEVVKTLFEAIM----LVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAA 385 Query: 817 LWQYIVGLPLQWMVMSMAVIILLAVGADYNLMMV---ARFKEEMPAGLKTGIIRAMGGAG 873 G + + M +++ + + D +++V R E K ++M Sbjct: 386 F-----GYSINTLTM-FGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQ 439 Query: 874 SVVTAAGLVFAFTMTSMVVSDLRTIGQIGTF-------IGLGLLFDTLIVRSFMVPSIAA 926 + A ++++ + G G I + L+ P++ A Sbjct: 440 GALVGI----AMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALIL-TPALCA 494 Query: 927 LL 928 L Sbjct: 495 TL 496
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.007 Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 19/180 (10%) Query: 36 ENELTRLIEENSDLRQRIAELDQELAAGAGGGAAVTAQPTQAMPVYEPEPEPAKPAAPVA 95 N L + R + + + A V + P+ + + P P AP Sbjct: 974 VNGRYDLYNPEVEKRNQTVDTTN-ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT 1032 Query: 96 SAATNEEQAMKAARVLSLAQDTADRLTSTAKAESDKMLSDARANADQILSEARHT--AET 153 + T E A + + S ++++ ++ A ++ EA+ A T Sbjct: 1033 PSETTETVAENSKQE------------SKTVEKNEQDATETTAQNREVAKEAKSNVKANT 1080 Query: 154 TVTE-ARQRADGMLADAQARSESQLRQAQEKADAL---QADAERKHSEIMGTINQQRTVL 209 E A+ ++ E+ + +EKA + + S++ Q TV Sbjct: 1081 QTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 2e-25 Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 1/185 (0%) Query: 328 VAVTGAGSGIGRETALAFAREGAEVVLSDIDEATVKDTAAEIAARGGVAHPYVLDVSDTE 387 +TGA GIG A A +GA + D + ++ + + A A + DV D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 388 AVEAFADQVSATHGLPDIVVNNAGVGQAGRFLDTPAEQFDRVLDVNLGGVVNGCRAFGQR 447 A++ ++ G DI+VN AGV + G E+++ VN GV N R+ + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 448 LVERGTGGHIVNVSSMAAYAPLQSLSAYCTSKAATFMFSDCLRAELDAADVGLTTICPGV 507 +++R G IV V S A P S++AY +SKAA MF+ CL EL ++ + PG Sbjct: 131 MMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 508 INTNI 512 T++ Sbjct: 190 TETDM 194
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 9e-06 Identities = 42/310 (13%), Positives = 82/310 (26%), Gaps = 34/310 (10%) Query: 93 PEAE----PAAAAQPEPEAEPEPQPEAKPQSGGSSAAGGDATPVLMPELGESVAEGTVTR 148 PE E + S A D PV P A T + Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQAD-VPSVPSNNEEIARVDEAPVPPP------APATPSE 1035 Query: 149 WLKKVGDSVQVDEALVEVSTDKVDTEIPSPVAGVLLSITAEEDDVVQVGGELARIGSGSA 208 + V ++ + + VE + + + E+A+ GS + Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATE--TTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 209 AAAPPESKPAPAPEAAPETKA-------APEPKAAPEPKPAPEPKAAPEPKPAPAATPQP 261 E+K E + K P+ + PK P+ +PA P Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 262 AAAPAPSAGDGTPYVTPLVRKLAEENNIDLDSVTGTGVGGRI------------RKQDVL 309 S + T ++ + + T G + + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 310 AAAEKKKERPEAKPAAAQASAPASPSKAAAPAAAAALAHLRGTKQKASRIRQITAIKTRE 369 ++ K K R + + + ++ + AL L + + + A Sbjct: 1214 ESSNKPKNR-HRRSVRSVPHNVEPATTSSNDRSTVALCDL-TSTNTNAVLSDARAKAQFV 1271 Query: 370 SLQATAQLTQ 379 +L ++Q Sbjct: 1272 ALNVGKAVSQ 1281 Score = 29.6 bits (66), Expect = 0.047 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 8/162 (4%) Query: 15 TEGTVTRWLKQEGDTVEIDEPLVEVSTDKVDTEIPSPAAGVLTKIVAKEDDTVEVGGELA 74 T K+ V+ + EV+ +T+ T V KE+ E Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV---ETE 1117 Query: 75 IIGDAAESGGGDAPSQPEPEAEPAAAAQPEPEAEPEPQPEAK-PQS-GGSSAAGGDATPV 132 + + +P Q + E A EP E +P K PQS ++A Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQPQA---EPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 133 LMPELGESVAEGTVTRWLKKVGDSVQVDEALVEVSTDKVDTE 174 + + V E T V ++ + T ++ Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.5 bits (87), Expect = 5e-05 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 32/150 (21%) Query: 6 VAIAGSSGLIGSALAAALRAADHRVLRI--------VRRTPANSEELHWNPESGEF---- 53 + G++G IG ++ L A H+V+ I V A E L + G Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELL---AQPGFQFHKI 59 Query: 54 ---DPDALTD------VDVVINLC---GVGIGRRRWSGAFKQSLRDSRITPTEVLSSAVA 101 D + +TD + V V R+S + DS +T + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNILEGCR 114 Query: 102 DAGVPTLINASAVGYYGDTRDRVVDENDPA 131 + L+ AS+ YG R +D Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSV 144
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.008 Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 38/143 (26%) Query: 3 RSQSAVEVIDLVKRRGSVTAVDGISFAVPPG----GVLGLLGPNGAGKTTTVRMLATLTR 58 + ++ G + ++ + PG + L G G GK+T + L Sbjct: 562 PDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLV---- 617 Query: 59 PTSGAAWVAGH--DVCAAPESVRREIGLTCQEATLDGLLTARENINMIGSLRGIRRKELA 116 G + + D+ +S + G+ E + + RR + Sbjct: 618 ---GLDFFSDTHFDIGTGKDSYEQIAGIVAYE---------------LSEMTAFRRADAE 659 Query: 117 SLTDRLLDQFSIAEFADRRVDTY 139 ++ F R D Y Sbjct: 660 ----------AVKAFFSSRKDRY 672
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 46.0 bits (109), Expect = 7e-07 Identities = 47/289 (16%), Positives = 104/289 (35%), Gaps = 42/289 (14%) Query: 212 IGVIVVMLLVIYGSVTTALVVLVMVVLQLAAARGVVALLGYHGLVGLSIFSTNVLVTLVI 271 I ++ +++ + ++ L+ + V + L ++A GY ++ + + +V+ Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY----SINTLT---MFGMVL 400 Query: 272 AAGT--DYAIFLVGRYQEARSAGQD--RESAFFTMFGGTAHVVLGSGLTIAGAMLCLSF- 326 A G D AI +V + + +E+ +M ++G + ++ + ++F Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSM-SQIQGALVGIAMVLSAVFIPMAFF 459 Query: 327 --TRLPYLQTLGVPLAVGMTVGVLAALTLGPALIAV------------TSRFGKVLEPRR 372 + + + + M + VL AL L PAL A F Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTF 519 Query: 373 QLRVRRWRKLGAAIARWPGPILITASVLALGGLLVLPGYRASFDDRNYLPKDVPANIGYA 432 V + I G L+ L + G++VL ++LP++ + G Sbjct: 520 DHSVNHYTNSVGKILGSTGRYLL-IYALIVAGMVVL----FLRLPSSFLPEE---DQGVF 571 Query: 433 AAERGFGAARMNPDVLLVESNHDLRNSADLLVIDKIA--KAIFAVEGIS 479 ++ + L D + ++ A +++F V G S Sbjct: 572 -----LTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFS 615 Score = 37.5 bits (87), Expect = 3e-04 Identities = 40/237 (16%), Positives = 80/237 (33%), Gaps = 39/237 (16%) Query: 148 YVQVNLMGLQGHARSIRSVKAVQRIVDSTPA--PDGVTTFVTGSAALMVDQQTVGSRSMR 205 Y + M +QG A S ++++ + P G+ TG M Q+ + Sbjct: 818 YNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTG----MSYQERLSGNQAP 873 Query: 206 LVELVTIGVIVVMLLVIYGSVTTALVVLVMVVLQLAAARGVVALLGYHGLVGLSIFSTNV 265 + ++ V+ + L +Y S + + V+++V L + L ++ Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQK----NDVYFMVG 929 Query: 266 LVTLVIAAGTDYAIFLVGRYQEARSA-GQDRESA---------------FFTMFGGTAHV 309 L+T + + + AI +V ++ G+ A G + Sbjct: 930 LLTTIGLSAKN-AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPL 988 Query: 310 VLGSGLTIAGAMLCLSFTRLPYLQTLGVPLAVGMTVGVLAALTLGPALIAVTSRFGK 366 + +G AG+ +G+ + GM L A+ P V R K Sbjct: 989 AISNG---AGSGA---------QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 34.0 bits (78), Expect = 0.004 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 7/171 (4%) Query: 781 IAALSLIFLIMLNITRSAIAALVIVGSVAASLGASVGLSVLLWQHLIGIELHWLVLSMSV 840 A+ L+FL+M ++ A L+ +V L + + + + + +VL++ + Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 841 IVLLAVGADYNLLLVSRLKEELHAGINTAIIRTVGATGSVATSAGLVFAFTMISMAV--- 897 +V A+ N V R+ E A +++ +V + I MA Sbjct: 405 LVDDAIVVVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGG 461 Query: 898 SDLTVIAQIGTTIGMGLLFDTFVVRALMTPSIAVLLGRWFWWPHHVRPRPI 948 S + Q TI + V L TP++ L + HH Sbjct: 462 STGAIYRQFSITIVSAMALSVLVALIL-TPALCATLLKPVSAEHHENKGGF 511
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 44.4 bits (105), Expect = 2e-06 Identities = 47/293 (16%), Positives = 103/293 (35%), Gaps = 42/293 (14%) Query: 208 LLVTFAVIVVMLLVIYGSVTTALAVLVMVVLQLAAARGVVALLGYHGLVGLSIFSTNVLV 267 L ++ +++ + ++ L + V + L ++A GY ++ + + Sbjct: 344 LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY----SINTLT---MF 396 Query: 268 TLVIAAGT--DYAIFLVGRYQEARSAGQD--RESAFFTMFGGTAHVVLGSGLTIAGAMLC 323 +V+A G D AI +V + + +E+ +M ++G + ++ + Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSM-SQIQGALVGIAMVLSAVFIP 455 Query: 324 LSF---TRLPYLQTLGVPLAVGMTVGVLAALTLGPALIAV------------TSRFGKVL 368 ++F + + + + M + VL AL L PAL A F Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWF 515 Query: 369 EPRRQLRVRRWRKLGAAIARWPGPILITASVLALGGLLVLPGYRASFDDRNYLPKDVPAN 428 V + I G L+ L + G++VL ++LP++ + Sbjct: 516 NTTFDHSVNHYTNSVGKILGSTGRYLL-IYALIVAGMVVL----FLRLPSSFLPEE---D 567 Query: 429 IGYAAAERGFGAARMNPDVLLVESNHDLRNSADLLVIDKIA--KAIFAVEGIS 479 G ++ + L D + ++ A +++F V G S Sbjct: 568 QGVF-----LTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFS 615 Score = 37.9 bits (88), Expect = 2e-04 Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 39/219 (17%) Query: 164 ESVAAVQGTLRDMPGPDGVNAFLTGPAVVLADQQIAGDRSMRLILLVTFAVIVVMLLVIY 223 +++A ++ +P G+ TG ++ Q+ ++ ++F V+ + L +Y Sbjct: 838 DAMALMENLASKLP--AGIGYDWTG----MSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 224 GSVTTALAVLVMVVLQLAAARGVVALLGYHGLVGLSIFSTNVLVTLVIAAGTDYAIFLVG 283 S + ++V+++V L + L ++ L+T + + + AI +V Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQK----NDVYFMVGLLTTIGLSAKN-AILIVE 946 Query: 284 RYQEARSA-GQDRESA---------------FFTMFGGTAHVVLGSGLTIAGAMLCLSFT 327 ++ G+ A G + + +G AG+ Sbjct: 947 FAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG---AGSGA----- 998 Query: 328 RLPYLQTLGVPLAVGMTVGVLAALTLGPALIAVTSRFGK 366 +G+ + GM L A+ P V R K Sbjct: 999 ----QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 34.0 bits (78), Expect = 0.003 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 7/171 (4%) Query: 781 IAALSLIFLIMLNITRSAIAALVIVGSVAASLGASVGLSVLLWQHLIGIELHWLVLSMSV 840 A+ L+FL+M ++ A L+ +V L + + + + + +VL++ + Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 841 IVLLAVGADYNLLLVSRLKEELHAGINTAIIRTVGATGSVATSAGLVFAFTMISMAV--- 897 +V A+ N V R+ E A +++ +V + I MA Sbjct: 405 LVDDAIVVVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGG 461 Query: 898 SDLTVIAQIGTTIGMGLLFDTFVVRALMTPSIAVLLGRWFWWPHHVRPRPI 948 S + Q TI + V L TP++ L + HH Sbjct: 462 STGAIYRQFSITIVSAMALSVLVALIL-TPALCATLLKPVSAEHHENKGGF 511
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 26.9 bits (59), Expect = 0.014 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 37 LNMSPGSIDVDLPLPECGIDSAMSLSLCADLQREHGIEADATIVWDYPTIRA 88 L +P I L + G+DS ++L +RE E + + PTI Sbjct: 243 LQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGA-EVTFVELAERPTIEE 293
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 27.1 bits (60), Expect = 0.006 Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 8 ITGSSGLIGSALAAALRVADHRALRI 33 +TG++G IG ++ L A H+ + I Sbjct: 5 VTGAAGFIGFHVSKRLLEAGHQVVGI 30
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.0 bits (65), Expect = 0.014 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%) Query: 47 LPYMIGAFVLIVGISVAVGVWAGGLTMITMIPFG--LLLGGLVAFI 90 LP ++ L+ + IPFG L + G +A + Sbjct: 231 LPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALL 276
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 7e-05 Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 361 GAGGAAGNAGLISGTGGVGGQGGVGGFGEGGAGGSGGGAGLIGNGGSGGTGGNAVGNSGV 420 G G N G S +G + G G G G + GSG + GG G+G + G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 421 GGHGGAGGQGGRLYGNGGVGGNGGFSGPITAGGAGGTGGTGGSAGLFGDGGAGGAGGASG 480 G GG G GG G+G G + P+ G + G + GA A A Sbjct: 63 GNGGGNGNSGG---GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Query: 481 FAS 483 A+ Sbjct: 120 MAA 122 Score = 35.1 bits (80), Expect = 0.001 Identities = 33/85 (38%), Positives = 38/85 (44%), Gaps = 9/85 (10%) Query: 468 GDGGAGGAGGASGFASGGTGGIGGTGGLLFGAAGDGGNGGFGAGGRGGSGGAGGDAWLFG 527 G G GA SG +GG G+G GG A DG G+ + GG+G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGG-----ASDGS--GWSSENNPWGGGSGSGIHWGG 58 Query: 528 SGGSGGGGGAGAINDGGSGGAGGNG 552 G G GGG G N GG G GGN Sbjct: 59 GSGHGNGGGNG--NSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.001 Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 5/107 (4%) Query: 132 GGDGGILFGSGGAGGSGAGGQDGGAGGRAGLFGNGGAGGAGGTGQTQGGAGGAGGLFFGN 191 GGDG G S +G +GG G G G GG G+G + G Sbjct: 3 GGDGR---GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 192 GGAGGPGGSGGLNGGAGGAGGVGGLLFGAGGAGGAGGTGTSGIGGLG 238 G G GG+G GG+G G + + A A G T G GGL Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAV--AAPVAFGFPALSTPGAGGLA 104 Score = 33.5 bits (76), Expect = 0.003 Identities = 23/77 (29%), Positives = 31/77 (40%) Query: 582 GGAGGNGGSAGLVGNGGAGGAGGQGGLIVSADGNNGGAGGDGGGAGLLLGAGGAGGQGGL 641 G G ++G + G G G G S + G G G+G+ G G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 642 GGNTGDGGNGGNGGNAA 658 GN+G G G +A Sbjct: 68 NGNSGGGSGTGGNLSAV 84 Score = 33.5 bits (76), Expect = 0.003 Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 7/100 (7%) Query: 164 GNGGAGGAGGTGQTQGGA-GGAGGLFFGNGGAGGPGGS------GGLNGGAGGAGGVGGL 216 G G G G T G GG GL G G + G G S GG +G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 217 LFGAGGAGGAGGTGTSGIGGLGGDGGSAGALSISAGGAGG 256 G G GG+GT G + G ++S GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.007 Identities = 31/109 (28%), Positives = 37/109 (33%) Query: 144 AGGSGAGGQDGGAGGRAGLFGNGGAGGAGGTGQTQGGAGGAGGLFFGNGGAGGPGGSGGL 203 +GG G G G + G G GG G + G G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 204 NGGAGGAGGVGGLLFGAGGAGGAGGTGTSGIGGLGGDGGSAGALSISAG 252 +G GG G GG G G L G A+SISAG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.0 bits (72), Expect = 0.009 Identities = 33/102 (32%), Positives = 39/102 (38%), Gaps = 10/102 (9%) Query: 618 GAGGDGGGAGLLLGAGGAGGQGGLGGNTGDGGNGGNGGNAALIGDGGSGGAGGDAGSGDA 677 G G + G G G+GG DG + N G G GG +G G+ Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 678 GDGGDGGDARLVGSGGNGGNGGFSATPAAGG-----TGGAGG 714 G G+ G G G GGN A P A G T GAGG Sbjct: 66 GGNGNSG-----GGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.014 Identities = 24/75 (32%), Positives = 26/75 (34%) Query: 279 GHGGGGGAGGTGTGMGVDNDGIGGAGGAGGSGGWLIGTGGTGGTGGFGDGPLGGQGGDGG 338 G G GA T + G+G GGA GW GG G G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 339 NAGLFGVGGDGGLGG 353 GG G G Sbjct: 66 GGNGNSGGGSGTGGN 80 Score = 30.8 bits (69), Expect = 0.019 Identities = 31/104 (29%), Positives = 34/104 (32%) Query: 206 GAGGAGGVGGLLFGAGGAGGAGGTGTSGIGGLGGDGGSAGALSISAGGAGGNGGTGLSGF 265 G G G G +G G G G G G S+ G G G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 266 GGAGGAGGNAGLYGHGGGGGAGGTGTGMGVDNDGIGGAGGAGGS 309 G GG G + G G GG A G GAGG S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 30.8 bits (69), Expect = 0.019 Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 352 GGTGFFGVGGAGGAAGNAGLISGTGGVGGQGGVG-GFGE-----GGAGGSGGGAGLIGNG 405 GG G GA +GN GVGG G G+ GG GSG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 406 GSGGTGGNAVGNSGVGGHGGA 426 G+GG GN+ G SG GG+ A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 30.8 bits (69), Expect = 0.020 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 330 LGGQGGDGGNAGLFGVGGDGGLGGTGFFGVGGAGGAAGNAGLISGTGGVGGQGGVGGFGE 389 + G G G N G G+ G TG GGA +G + + GG G G +G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI--HWGG 58 Query: 390 GGAGGSGGGAGLIGNGGSGGTGGNAV 415 G G+GGG G G G G +AV Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 30.5 bits (68), Expect = 0.029 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 5/106 (4%) Query: 322 TGGFGDGPLGGQGGDGGNAGLFGVGGDGGLGGTGFFGVGGAGGAAGNAGLISGTGGVGGQ 381 +GG G G G GN GG GLG G G+G ++ N G+G Sbjct: 2 SGGDGRGHNTGAHSTSGNIN----GGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHW 56 Query: 382 GGVGGFGEGGAGGSGGGAGLIGNGGSGGTGGNAVGNSGVGGHGGAG 427 GG G G GG G+ GG G S A G + G G Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.1 bits (67), Expect = 0.036 Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 372 ISGTGGVGGQGGVGGFGEGGAGGSGGGAGLIGNGGSGGTGGNAVGNSGVGGHGGAGGQGG 431 +SG G G G GG G G G S G+G ++ N GG G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGV--GGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 432 RLYGNGGVGGNGGFSGPITAGGAGGTGGTGGSAGLFGDGGAGGAGGASGFASG 484 G+G GGNG G GG + G G G A ++G Sbjct: 59 G-SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 30.8 bits (69), Expect = 0.008 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 67 VLVGALAQVT---RRLKFVTTVYIPAMRNPYSAAKAIGTAALLAS 108 LVGAL +T F TTV IPA+ + A+GT + L Sbjct: 18 ALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGLLG 62
>cloacin#Cloacin signature. Length = 551 Score = 39.3 bits (91), Expect = 6e-05 Identities = 31/102 (30%), Positives = 39/102 (38%) Query: 372 GGVGTSTNGGAAGGTGGRGGLSGGVGGTDGAGGDGGQGGSGGAVGTGATAGAGGAGGAGA 431 GG G N GA +G G G+G GA G G G+ +G GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 432 AATSGGPGYGGGGGGGGGGARVLPTSGGITSGTATGGEGGVG 473 G GGG G GG + V +T G GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.8 bits (87), Expect = 2e-04 Identities = 33/102 (32%), Positives = 39/102 (38%) Query: 413 GAVGTGATAGAGGAGGAGAAATSGGPGYGGGGGGGGGGARVLPTSGGITSGTATGGEGGV 472 G G G GA G +G GG G G + P GG SG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 473 GGAGTTVAAGGVGGHGGNATLAASDAGSSADGTATGGAGGAG 514 G G +GG G GGN + A+ +T GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.8 bits (82), Expect = 7e-04 Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 10/113 (8%) Query: 329 TGGNGGDGGSGGVAGAGGSGGFLGSAGATGGAGDGGRGGTGGLGGVGTSTNGGAAGGTGG 388 +GG+G +G + +G G G GGA DG G S+ GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS----------GWSSENNPWGGGSG 51 Query: 389 RGGLSGGVGGTDGAGGDGGQGGSGGAVGTGATAGAGGAGGAGAAATSGGPGYG 441 G GG G GG+G GG G G + A A G A +T G G Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.7 bits (79), Expect = 0.002 Identities = 31/113 (27%), Positives = 39/113 (34%) Query: 398 GTDGAGGDGGQGGSGGAVGTGATAGAGGAGGAGAAATSGGPGYGGGGGGGGGGARVLPTS 457 G DG G + G + G + G T G G + + S GGG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 458 GGITSGTATGGEGGVGGAGTTVAAGGVGGHGGNATLAASDAGSSADGTATGGA 510 G +GG G GG + VAA G +T A S A A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 34.3 bits (78), Expect = 0.002 Identities = 21/82 (25%), Positives = 31/82 (37%) Query: 567 NGAGSSASGSAIGGYGGAGTTGGLGGVGGYAQVSASNGGTATGTVSGGYGGAGTTGGHGG 626 N S SG+ GG G G GG G++ + GG + + G G GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 627 GGGNAFLRANGAGSSASGISIG 648 G + A+ ++ G Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.9 bits (77), Expect = 0.003 Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 2/106 (1%) Query: 279 GHGGPGGVGGVGGRVVGLFGSGGGGGAGGDGGVGGTGAQGAPGTQSFSAGTGGNGGDGGS 338 G G G G + G G GG DG + G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 339 GGVAGAGGSGGFLGSAGATGGAGDGGRGG--TGGLGGVGTSTNGGA 382 GG +GG G G+ A G T G GG+ S + GA Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.9 bits (77), Expect = 0.003 Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Query: 501 SADGTATGGAGGAGGTNHASGGRGGDATISTSGGGTITGGTATGGVGGAGTTGGSGGGGG 560 S G GG G G AS G G + + GGG+ +G GG G G GGG Sbjct: 15 STSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGG 74 Query: 561 SGALFANGAGSSASGSAIGGYGGAGTTGGLGGVG 594 SG G SA + + A +T G GG+ Sbjct: 75 SGT----GGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.003 Identities = 27/84 (32%), Positives = 35/84 (41%) Query: 594 GGYAQVSASNGGTATGTVSGGYGGAGTTGGHGGGGGNAFLRANGAGSSASGISIGGAGGA 653 GG + + + +G ++GG G G GG G G + G S SGI GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 654 GTAGGYGGSGNYASIRGYSGATVT 677 G GG G SG + G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.004 Identities = 26/82 (31%), Positives = 31/82 (37%) Query: 532 SGGGTITGGTATGGVGGAGTTGGSGGGGGSGALFANGAGSSASGSAIGGYGGAGTTGGLG 591 + G T G GG G G GG+ G G + G S SG GG G G GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 592 GVGGYAQVSASNGGTATGTVSG 613 GG + + A G Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.1 bits (75), Expect = 0.005 Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 140 GGPGGWLWGDGGDGGSGTPGTATSPAGGAGGAGGSAFLFGSGGHGGSGGTAYAGSGAVGG 199 GGP G G G S G ++ GG+G G GHG GG +G G+ G Sbjct: 22 GGPTG---LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Query: 200 TGGNGGAGGLIFG--GGGAGGVGGLGAAGSATA 230 + A + FG G GGL + SA A Sbjct: 79 GNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.005 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 512 GAGGTNHASGGRGGDATISTSGGGTITGGTATGGVGGAGTTGGSGGGGGSGALFANGAGS 571 G G H +G I+ G GG A+ G G + GGG GSG + G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 572 SASGSAIGGYGGAGTTGGLGGVG-----GYAQVSASNGGTATGTVSGG 614 G GG+GT G L V G+ +S G ++S G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.2 bits (70), Expect = 0.019 Identities = 31/113 (27%), Positives = 38/113 (33%) Query: 233 GMGGHGGAGGTSYQLGGAAGAGGAGGQGGLGYDAAADPMAAAGASGGHGGPGGVGGVGGR 292 G G + GA TS + G G GG G +++ G SG GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 293 VVGLFGSGGGGGAGGDGGVGGTGAQGAPGTQSFSAGTGGNGGDGGSGGVAGAG 345 GG G G V A G P + AG G+ A A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 31.2 bits (70), Expect = 0.021 Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 8/89 (8%) Query: 305 AGGDGGVGGTGAQGAPGTQSFSAGTGGNGGDGGSGGVAGAGGSGGFLGSAGATGGAGDGG 364 +GGDG TGA G NGG G G GA G+ GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNI--------NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG 53 Query: 365 RGGTGGLGGVGTSTNGGAAGGTGGRGGLS 393 GG G NG + GG+G G LS Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 30.8 bits (69), Expect = 0.026 Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 168 AGGAGGSAFLFGSGGHGGSGGTAYAGSGAVGGTGGNGGAGGLIFGGGGAGGVGGLGAAGS 227 G S + G G GG A GSG GG G GG G G G G+ Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 228 ATAAPGMGGHGGAGGTSYQLGGAAGAGGAGGQGGLGYDAAADPMAAAGA 276 + G GG+ A G A + G GGL +A ++AA A Sbjct: 71 SGGGSGTGGNLSAVAAPVAFGFPALS--TPGAGGLAVSISAGALSAAIA 117 Score = 30.5 bits (68), Expect = 0.029 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 148 GDGGDGGSGTPGTATSPAGGAGGAGGSAFLFGSGGHGGSGGTAYAGSGAVGGTGGNGGAG 207 GDG +G T+ + GG G G G GSG+ GG G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 208 GLIFGGGGAGGVGGLGAAGSATAAP 232 G G +GG G G SA AAP Sbjct: 64 NG-GGNGNSGGGSGTGGNLSAVAAP 87 Score = 30.1 bits (67), Expect = 0.045 Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 1/83 (1%) Query: 301 GGGGAGGDGGVGGTGAQGAPGTQSFSAGTGGNGGDGGSGGVAGAGGSGGFLGSAGATGGA 360 GG G G + G T G G G + G G S GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 361 GDGGRGGTGGLGGVGTSTNGGAA 383 G+GG G G GG GT N A Sbjct: 63 GNGGGNGNSG-GGSGTGGNLSAV 84
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.005 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 21/156 (13%) Query: 35 SAFEQVRVQHEAVSDRLAAVRIALEDLDAQVSRLEDEIDAVRKREDRDRSLLTSGAVDAK 94 F + Q L R + A+++R E+ + R D SLL A+ Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA-- 250 Query: 95 QLADLQHELETLERRQASLEDSLLEVMERREELQAQQNTEIAALEVLQAELTAAQQSVDA 154 +H + E + E + + LE +++E+ +A++ Sbjct: 251 -----KHAVLEQENKYV--------------EAVNELRVYKSQLEQIESEILSAKEEYQL 291 Query: 155 ALAELDQSRQEHSSRRDTLAASLNPDLAALYERLRA 190 + + L +LA ER +A Sbjct: 292 VTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQA 327 Score = 29.0 bits (65), Expect = 0.017 Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 5/132 (3%) Query: 62 DAQVSRLEDEIDAVRKREDRDRSLLTSGAVDAKQLADLQHE--LETLERRQASLEDSLLE 119 +A + + + R + R + L S ++ L E + + + SL++ Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192 Query: 120 VMERREELQAQQNTEIAALEVLQAELTAAQQSVDAALAELDQSRQEHSSRRDTLAASLNP 179 E+ Q Q+ + L+ +AE ++ + L Sbjct: 193 --EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 180 DLAAL-YERLRA 190 A L E Sbjct: 251 KHAVLEQENKYV 262
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.025 Identities = 12/47 (25%), Positives = 18/47 (38%) Query: 87 HQDAFPLLITHGWPGSVVEFHKVIEPLTNPTAHGGRAEDAFHVVCPS 133 Q+A L+ H WPG+V E ++ LT + S Sbjct: 339 DQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRS 385
>cloacin#Cloacin signature. Length = 551 Score = 36.6 bits (84), Expect = 5e-04 Identities = 30/83 (36%), Positives = 35/83 (42%) Query: 442 GSGGNGGNGGISGLIGNGGAGGAGGNGSAAGYNGYSGNGGNGGNGGAAQLIGAGGGGGVA 501 G G N G SG I G G G G++ G S N GG G+ G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 502 GIGGAGGTGAAAGVTGSAGASGV 524 G G G G+ G SA A+ V Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPV 88 Score = 35.5 bits (81), Expect = 0.001 Identities = 35/108 (32%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Query: 421 NGGAGGAGGASGAGIGGDSLGGSGGNGGNGGISGLIG----NGGAGGAGGNGSAAGYNGY 476 +GG G G+ GG G G GG S G N GG G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 477 SGNGGNGGNGGAAQLIGAGGGGGVAGIGGAGGTGAAAGVTGSAGASGV 524 GNGG GN G G+G GG ++ + G A T AG V Sbjct: 62 HGNGGGNGNSGG----GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAV 105 Score = 34.7 bits (79), Expect = 0.002 Identities = 26/76 (34%), Positives = 33/76 (43%) Query: 170 GIGGAGGSGGAGGTGGWLYGNGGAGGAGGAGAPGLVSFNGSNGGNGGNGGAAGWWGTGGA 229 G G G + GA T G + G G GG + G + +N GG+G W G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 230 GGAGGEGGAAGGGPAG 245 G GG G + GG G Sbjct: 63 GNGGGNGNSGGGSGTG 78 Score = 34.3 bits (78), Expect = 0.002 Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 308 GDGGAGGQGGDGGGVTGLVGAGHGGAGGDGGRAGWLSGNAGAGGGGGAGGAVDNHGSGGD 367 G G G G + G G G G +GW S N GGG G+G + G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDG-SGWSSENNPWGGGSGSG---IHWGGGSG 61 Query: 368 YAGGGGAGGSGGAAGLFGNGAAGGAGGAGGASQTFTGAGGAGGTGGAGGWL 418 + GGG G SGG +G GN +A A A G T G + G L Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112 Score = 33.9 bits (77), Expect = 0.004 Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 385 GNGAAGGAGGAGG-ASQTFTGAGGAGGTGGAGGWLYGNGGAGGAGGASGAGIGGDSLGGS 443 G G GA G + TG G GG GW N GG G+ GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 444 GGNGGNGGISGLIGNGGAGGA 464 GGNG +GG SG GN A A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.005 Identities = 23/64 (35%), Positives = 27/64 (42%) Query: 122 ADGTAPGQAGGAGGLLYGNGGNGAAGTNPGVAGGAGGAAGLIGNGGAGGIGGAGGSGGAG 181 G G G G + G+G + N GG+G G G G GG G SGG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 182 GTGG 185 GTGG Sbjct: 76 GTGG 79 Score = 33.1 bits (75), Expect = 0.006 Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Query: 571 GSGAAGQAGGAGGAAGLIGNGGAGGTGGSGAAGGSGAAGGN---GGAGGWLFGNGGTGGT 627 G G GA +G I G G G GA+ GSG + N GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 628 GGDAVAGLPGLNGGNGGNGGAGGAAGWWGHGGIGGQGGTGGA 669 G G G G GGN A A +G + G G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.1 bits (75), Expect = 0.006 Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 351 GGGGAGGAVDNHGSGGDYAGG-GGAGGSGGAAGLFGNGAAGGAGGAGGASQTFTGAGGAG 409 GG G G H + G+ GG G G GGA+ G + G G S G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 410 GTGGAGGWLYGNGGAGGAGGASGAGI 435 G GG G G G GG A A + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 33.1 bits (75), Expect = 0.006 Identities = 30/100 (30%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 604 GSGAAGGNGGAGGWLFGNGGTGGTGGDAVAGLPGLNGGNGGNGGAGGAAGWWGHGGIGGQ 663 G G G G + G G GG A G G + N GG G+ WG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDG-SGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 664 GGTGGAAGGNPGIYAGNAGTGGDGGAGGWLFGDAGAGGQG 703 GG G +GG G + G GAGG Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.4 bits (73), Expect = 0.009 Identities = 28/108 (25%), Positives = 34/108 (31%) Query: 546 GADGAPGTGQAGGDGGWLYGNGGAGGSGAAGQAGGAGGAAGLIGNGGAGGTGGSGAAGGS 605 G DG A G + G G G G + GG+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 606 GAAGGNGGAGGWLFGNGGTGGTGGDAVAGLPGLNGGNGGNGGAGGAAG 653 G GGNG +GG G G P L+ G +AG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.0 bits (72), Expect = 0.012 Identities = 26/99 (26%), Positives = 30/99 (30%) Query: 331 GGAGGDGGRAGWLSGNAGAGGGGGAGGAVDNHGSGGDYAGGGGAGGSGGAAGLFGNGAAG 390 G G A SGN G G G + GSG GGSG G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 391 GAGGAGGASQTFTGAGGAGGTGGAGGWLYGNGGAGGAGG 429 GG G + G + + GAGG Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.2 bits (70), Expect = 0.024 Identities = 28/113 (24%), Positives = 35/113 (30%), Gaps = 8/113 (7%) Query: 211 NGGNGGNGGAAGWWGTGGAGGAGGEGGAAGGGPAGIAYGQTGGVGGNGGNGGNGGWFAGN 270 +GG+G +G G G GG G + G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 271 AGAGGNGGVGGDGNAADNGLVGGTGGVGGAGGSAGLFGDGGAGGQGGDGGGVT 323 G GG G G G+ GTGG A + FG G G V+ Sbjct: 62 HGNGGGNGNSGGGS--------GTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 30.8 bits (69), Expect = 0.028 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 280 GGDGNAADNGLVGGTGGVGGAGGSAGLFGDGGAGGQGGDGGGVTGLVGAGHGGAGGDGGR 339 GGDG + G +G + G G+ GG G G G G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV---GGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 340 AGWLSGNAGAGGGGGAGGAVDNHGSGGDYAGGGGAGGSGGAAGL 383 +G +G GGG+G + A G A + GA GL Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 30.8 bits (69), Expect = 0.029 Identities = 37/105 (35%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 641 GNGGNGGAGGAAGWWGHGGIGGQGGTGGAAGGNPGIYAGNAGTGGDGGAGGWLFGDAGAG 700 G G N GA +G +GG G G GGA+ G G + N GG G+G G +G G Sbjct: 6 GRGHNTGAHSTSGNI-NGGPTGLGVGGGASDG-SGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 701 GQGGTGGAANDPLVTSSTGGSGGAGGNGGAAGL--FGAGGAGGTG 743 GG G + S TGG+ A A G GAGG Sbjct: 64 NGGGNGNSGG----GSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 93.3 bits (232), Expect = 9e-24 Identities = 61/359 (16%), Positives = 111/359 (30%), Gaps = 73/359 (20%) Query: 17 TIFITGANGFIGRAMAARFRALGAVVRGVD----------------LAADPAGDVVAGDI 60 +TGA GFIG ++ R G V G+D L A P D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 61 TRPETWAAGPTGLEGADTVIHTAALLGAAFPLKQAW---HVNVLGTSRVLRAAIDAGVRR 117 E + V + L + L+ N+ G +L ++ Sbjct: 62 ADRE-GMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 118 FVHFSSVAAYGFEFPDGADETYPVHVNGDVYTDTKVNSEAVVLAAHGAGEIDVTVIRPGD 177 ++ SS + YG V +Y TK +E + + T +R Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 178 VWGPGSVWVRSPIA------EMRKRTGFPLPNGGNGIFSPVYIDNFVDGMVLAV------ 225 V+GP W R +A M + + N G YID+ + ++ Sbjct: 181 VYGP---WGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 226 -----------SSDDAVGQIFNITDGKGVRCADFFGRMASMSDGTIHTLPIRVAAPAAEL 274 ++ A +++NI + V D+ I L Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDY-----------IQALE---------- 276 Query: 275 LGSLLRRLGQKTDLSAGTMWLLNRPGTY-SIEKAQKMLGYQPRVSIEEGMARVHEWARA 332 LG + + + + T + +++G+ P ++++G+ W R Sbjct: 277 -----DALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 100 bits (250), Expect = 3e-26 Identities = 71/362 (19%), Positives = 124/362 (34%), Gaps = 82/362 (22%) Query: 17 KIFITGANGFIGANLAARLRQLGARVTGVD----------------LVADPANGIIAGST 60 K +TGA GFIG +++ RL + G +V G+D L+A P Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 61 ADPAAWASALD--GVDAVVHLAALVSTVVAVETAW---DVNVLGTKKVIDAAVDAGVRRF 115 AD + V ++ ++E D N+ G +++ ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 116 VHLSSIAAYGWDFPDHVTEDYPTRVTGGLSTYVDTKTNSELVALA-NANRGMEMVVVRPA 174 ++ SS + YG + + D +S Y TK +EL+A + G+ +R Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHP--VSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 175 DVYGPGSVWIREPIAMAKANQLILPERGSGVF-------DVIYIDNFVDAMVLVL----- 222 VYGP W R +A+ K + +L + V+ D YID+ +A++ + Sbjct: 180 TVYGP---WGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 223 ------------ATEGIAGEVFNLGEELAVSCQEYFGEVASWTG--AKVRSVPIRIG-AP 267 A V+N+G V +Y + G AK +P++ G Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVL 296 Query: 268 ALGAIGRIQRRLGMSSELGPALLHMLNRRYVVSNDKARDRLGFKPVVSYHEGMARSKEWA 327 A + +GF P + +G+ W Sbjct: 297 ETSA----------------------------DTKALYEVIGFTPETTVKDGVKNFVNWY 328 Query: 328 RH 329 R Sbjct: 329 RD 330
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 5e-04 Identities = 28/92 (30%), Positives = 34/92 (36%) Query: 206 AGGAGGYTTSGTGGAGGAGGTGGLLGGGGVGGAGGMAYSAGTTGGAGGAGGAGGVLSGLV 265 +GG G +G G G G G G + G +S+ GG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 266 GAGGGHGGTGGAGSGTGGAGGAGGPAGLLGGP 297 GG G G GSGTGG A G P Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFP 93 Score = 35.5 bits (81), Expect = 0.001 Identities = 33/81 (40%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 268 GGGHGGTGGAGSGTGGAGGAGGPAGLLGGPGGAGGDGGYGDTGGAGGAGGAGGWLFGNGG 327 G G G GA S +G G GP GL G G + G G + GG G+G G G Sbjct: 4 GDGRGHNTGAHSTSGNING--GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 328 AGGTGGTSIGSTGGAGGTGGN 348 G GG G++GG GTGGN Sbjct: 62 HGNGGGN--GNSGGGSGTGGN 80 Score = 35.1 bits (80), Expect = 0.001 Identities = 30/82 (36%), Positives = 34/82 (41%) Query: 559 GGRGGTGGDGGAGGAGGWFSGDGGVGGIGGGSTAAGATGGTGGTGGAGGLFGAGGNGGAG 618 GG G G GGA GW S + GG G G G G GG G G G GG Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 619 GAGTYFISAFGGAGGTGGSGGL 640 A ++ A T G+GGL Sbjct: 82 SAVAAPVAFGFPALSTPGAGGL 103 Score = 34.7 bits (79), Expect = 0.002 Identities = 29/104 (27%), Positives = 39/104 (37%) Query: 261 LSGLVGAGGGHGGTGGAGSGTGGAGGAGGPAGLLGGPGGAGGDGGYGDTGGAGGAGGAGG 320 +SG G G G +G+ GG G G G G G + + +G G+G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 321 WLFGNGGAGGTGGTSIGSTGGAGGTGGNAGWLGNGGTGGTGGFS 364 GG G +GG S + A T G GG + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.3 bits (78), Expect = 0.002 Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Query: 661 NSGAGGAGG-AGGDAGLLGGPGGAGGTGGPGDFGTTHGGAGGAGGNAGLLFGSGGTGGTG 719 N+GA G G LG GGA G GG G+G + G G G GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 720 GYGASAGDGGHGGSAG----LLFSGAGAGGAGGVGLSGPGGA 757 G +G GG+ + F GAGG+ +S GA Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.9 bits (77), Expect = 0.003 Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 5/82 (6%) Query: 331 TGGTSIGSTGGAGGTGGNAGWLGNGGTGGTGGFSRYGLGGD-----GGTGGNAGWLGNGG 385 +GG G GA T GN G G G G + GG+G W G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 386 TGGTGGFSGSGLGGDGGYGGTA 407 G GG SG G G +A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 33.9 bits (77), Expect = 0.003 Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 7/108 (6%) Query: 148 GDGGAGGSGAPGKAGGAGGAAGLWGSGGAGGAGGSTSSGVAGAGGAGGAGGWLLGTGGAG 207 GDG +GA +G G G GG G SS GG G+G G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 208 GAGGYTTSGTGGAGGAGGTGGLLGGGGVGGAGGMAYSAGTTGGAGGAG 255 G G G +GG GTGG V + A +T GAGG Sbjct: 64 NGG-----GNGNSGGGSGTGG--NLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.003 Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 202 GTGGAGGAGGYTTSGTGGAGGAGGTGGLLGGGGVGGAGGMAYSAGTTGGAGGAGGAGGVL 261 G G GA + + GG G G GG G G + G+ G GG+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENN-PWGGGSGSGIHWGGGSGHGN 64 Query: 262 SGLVGAGGGHGGTGGAGSGTGGAGGAGGPAGLLGGPGGAG 301 G G GG GTGG S G PA G GG Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.003 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 724 SAGDGGHGGSAGLLFSGAGAGGAGGVGLSGPGGAGGRGGDAGWLGDGGAGGTGGSSHYGD 783 S GDG + SG GG G+G+ G G +GW + G G S Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDG-----SGWSSENNPWGGGSGSGIHW 56 Query: 784 GGDGGAGGAAGQLSGGGGAGGQGGQGNIAGAV 815 GG G G G + GGG+G G +A V Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 33.9 bits (77), Expect = 0.003 Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 3/124 (2%) Query: 560 GRGGTGGDGGAGGAGGWFSGDGGVGGIGGGSTAAGATGGTGGTGGAGGLFGAGGNGGAGG 619 G G G + GA G +G G+GGG++ G G G GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 620 AGTYFISAFGGAGGTGGSGGLLSGLVGAGG---GHGGAGGTAISNSGAGGAGGAGGDAGL 676 GG GTGG+ ++ V G GAGG A+S S + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 677 LGGP 680 L GP Sbjct: 123 LKGP 126 Score = 33.1 bits (75), Expect = 0.005 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 507 NGTPGATGSGADGTPGGWLLGDGGAGGSGLAGRD---GGAGGAAGLWGTGGTGGAGGRGG 563 N +T +G P G +G G + GSG + + GG G+ WG G G GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 564 TGGDGGAGGAGG 575 G G G Sbjct: 70 NSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.011 Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 298 GGAGGDGGYGDTGGAGGAGGAGGWLFGNGGAGGTGGTSIGSTGGAGGTGGNAGWLGNGGT 357 GG G G +G G L GGA G S + GG+G W G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 358 GGTGGFSRYGLGGDGGTGGNAGWLGNGGTGGTGGFSGSGLGG 399 G GG GG GTGGN + G S G GG Sbjct: 63 GNGGGNG--NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.014 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 764 AGWLGDGGAGGTGGSSHYGDGGDGGAGGAAGQLSGGGGAGGQGGQGNIAGAVTRTGGDGG 823 +G G G G +S +GG G G G G G + G +G+ GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 824 AGGDAVLIGNGGNGGNGGTDGTGAPTGSPGAGG 856 G GNG +GG GT G + +P A G Sbjct: 62 HGNGG---GNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 31.6 bits (71), Expect = 0.016 Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 5/113 (4%) Query: 231 GGGGVGGAGGMAYSAGT-TGGAGGAGGAGGVLSGLVGAGGGHGGTGGAGSGTGGAGGAGG 289 GG G G G ++G GG G G GG G + + GG+GSG GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 290 PAGLLGGPGGAGGDGGYGDTGGAGGAGGAGGWLFGNGGAGGTGGTSIGSTGGA 342 G G GG G G + F G GG ++ + GA Sbjct: 63 G----NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 30.8 bits (69), Expect = 0.027 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 782 GDGGDGGAGGAAGQLSGGGGAGGQGGQGNIAGAVTRTGGDGGAGGDAVLIGNGGNGGNGG 841 G G + GA +G ++GG G GG + + G GG I GG G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSGHGN 64 Query: 842 TDGTGAPTGSPGAGGTG 858 G G G G GG Sbjct: 65 GGGNGNSGGGSGTGGNL 81 Score = 30.5 bits (68), Expect = 0.037 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 678 GGPGGAGGTGGPGDFGTTHGGAGGAGGNAGLLFGSGGTGGTGGYGASAGDGGHGGSAGLL 737 GG G TG G +GG G G G GSG + +G +G G H G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG----- 57 Query: 738 FSGAGAGGAGGVGLSGPGGAGGRGGDA 764 G+G G GG G SG G G A Sbjct: 58 -GGSGHGNGGGNGNSGGGSGTGGNLSA 83
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (251), Expect = 1e-27 Identities = 70/253 (27%), Positives = 108/253 (42%), Gaps = 21/253 (8%) Query: 12 VTGASSGIGLATVGRLLEQGCAVVGAD--------VVTPPHDLGPRFTFVTADVTDEDAV 63 +TGA+ GIG A L QG + D VV+ ADV D A+ Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 64 AGV---FDAVPDRLDGVVHSAGVAGGGPVHLLARAEWDRVIGVNLTGTFLVAKAALARMI 120 + + +D +V+ AGV G +H L+ EW+ VN TG F +++ M+ Sbjct: 73 DEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMM 132 Query: 121 EQPRVDGERGSIVTLASIEGLEGTAGGSSYNAAKGGVVLLTKNIALDYGPSGIRANAICP 180 ++ GSIVT+ S ++Y ++K V+ TK + L+ IR N + P Sbjct: 133 DR-----RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 181 GFIATPLAEGVFGMPGMEGPRASITNEH-----ALQRLGKPEEIAAMAAFLLSPDASFVT 235 G T + ++ + E L++L KP +IA FL+S A +T Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 236 GQAIAVDGGYTAG 248 + VDGG T G Sbjct: 248 MHNLCVDGGATLG 260
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.5 bits (89), Expect = 5e-06 Identities = 16/90 (17%), Positives = 35/90 (38%) Query: 1 MTARERLIESAIELLRRNGVAGTGLADLLEHSGTARRSVYVNFPGGKSELMTEATRTAGR 60 R+ +++ A+ L + GV+ T L ++ + +G R ++Y +F + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 LMDSTLASIAAGGDQPLVAFADSWKQTLRA 90 + + L A PL + L + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLES 99
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 109 bits (274), Expect = 9e-31 Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 8/193 (4%) Query: 7 VALITGVSSGIGAAIAVRLASAGFRVVGTSRAPQRLAPIPGV--------ETLALDVTDD 58 +A ITG + GIG A+A LAS G + P++L + E DV D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 59 TAVRSVVSEVIDRTGRIDVLVNNAGLGIAGAAEESSIDQARSLFDTNFFGLIRLTNEVLP 118 A+ + + + G ID+LVN AG+ G S ++ + F N G+ + V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 119 HMRRRGSGRIINISSVLGFLPAPYAALYAASKHAVEGYTESLDHELREYGVRALLVEPSY 178 +M R SG I+ + S +P A YA+SK A +T+ L EL EY +R +V P Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 179 TRTDFESNMWEAD 191 T TD + ++W + Sbjct: 190 TETDMQWSLWADE 202
>PERTACTIN#Pertactin signature. Length = 922 Score = 37.8 bits (87), Expect = 7e-05 Identities = 22/44 (50%), Positives = 23/44 (52%) Query: 293 PPRAPAPTPQPQLRPPRPQAPTPPPPQDVPPPQQLEPPVVAPQP 336 P PAP P PQ P PQ P PP P P P Q +P APQP Sbjct: 569 PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQP 612 Score = 35.8 bits (82), Expect = 2e-04 Identities = 18/43 (41%), Positives = 20/43 (46%) Query: 294 PRAPAPTPQPQLRPPRPQAPTPPPPQDVPPPQQLEPPVVAPQP 336 P AP P PQP +P P PPQ PPQ + AP P Sbjct: 568 PPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAP 610 Score = 33.9 bits (77), Expect = 9e-04 Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 280 LPAQPPPPAHILIPPRAPAPTPQPQLRPPRPQAPTPPPPQDVPPPQQLEPPVVAPQPG 337 L PPA P AP P PQP +PP+P P PP PP +Q E P P G Sbjct: 562 LVGAKAPPA----PKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAG 615 Score = 33.2 bits (75), Expect = 0.002 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 258 ADPAPLVKAVPAGETVAPMP-PQLPAQPPPPAHILIPPRAPAPTPQPQLRPPRPQAPTPP 316 A+ V A AP P PQ QP P P P PQP R P AP PP Sbjct: 554 ANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPP 613 Query: 317 PPQDV 321 +++ Sbjct: 614 AGREL 618 Score = 29.7 bits (66), Expect = 0.019 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 274 APMPPQLPAQPPPPAHILIPPRAPAPTPQPQLRPPRPQAPTPPPPQDVPPPQQ 326 A PP P P P P PQP +PP+P P P PP + Sbjct: 565 AKAPPAPKPAPQPGPQPGPQPPQPPQPPQPP-QPPQPPQRQPEAPAPQPPAGR 616
>cloacin#Cloacin signature. Length = 551 Score = 48.9 bits (116), Expect = 7e-08 Identities = 41/119 (34%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 417 SGTGGSGGTGGTGGSSFIGSGGTGGAGGAGGTATGSGASGAGGAGGSGGYNGFIGAGGTG 476 SG G G G +S +GG G G GG + GSG S G GG I GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGS 60 Query: 477 GAGGDGGGGNQGAAAGDGGSGGTAAGL----FGAGGTGGTGGTGGTTTANGGTGGAAGV 531 G G GG GN G +G GG+ A F A T G GG + +A + A + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 43.9 bits (103), Expect = 2e-06 Identities = 30/110 (27%), Positives = 40/110 (36%) Query: 348 GNGGNGGVGGNASLVGNGGAGGAGGAGGTGSSLSYGGHGGNGGNGGTDGLLFGKGGAGGD 407 G G N G + + G G G G + S + GG G+ G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 408 GGAGGGTTSSGTGGSGGTGGTGGSSFIGSGGTGGAGGAGGTATGSGASGA 457 GG G SGTGG+ + + T GAGG + + S A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 43.5 bits (102), Expect = 3e-06 Identities = 32/102 (31%), Positives = 39/102 (38%) Query: 363 GNGGAGGAGGAGGTGSSLSYGGHGGNGGNGGTDGLLFGKGGAGGDGGAGGGTTSSGTGGS 422 G G G GA T +++ G G G G +DG + GG+G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 423 GGTGGTGGSSFIGSGGTGGAGGAGGTATGSGASGAGGAGGSG 464 G GG G S G + A A G A GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 41.2 bits (96), Expect = 2e-05 Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 9/93 (9%) Query: 162 GNGGAGGNGGDYLVGG---GGAGGAGGNGGVLYGNGGTGGAGGSGTTSYGAAGVGGNALL 218 G G G N G + G GG G G G G + G+G S + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG------GASDGSGWSSENNPWGGGSGSGIHW 56 Query: 219 FGNGGTGGSGLGGGGNGGNAVFGNGGAGGAGVA 251 G G G G G GG+ GN A A VA Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 40.1 bits (93), Expect = 3e-05 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 14/116 (12%) Query: 452 SGASGAGGAGGSGGYNGFIGAGGTGGAGGDGGGGNQGAAAGD---GGSGGTAAGLFGAGG 508 SG G G G+ +G I G TG G G G ++ + GG G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 509 TGGTGGTGGTTTANGGTGGAAGVGGSGGDASSLIALG----GTGGVGGVGGAATGG 560 G GG NG +GG +G GG+ ++ +A G T G GG+ + + G Sbjct: 62 HGNGGG-------NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 38.9 bits (90), Expect = 9e-05 Identities = 33/117 (28%), Positives = 47/117 (40%) Query: 137 GNGGNGYSQTDGGLAGGKGGNAGLIGNGGAGGNGGDYLVGGGGAGGAGGNGGVLYGNGGT 196 G G G++ +G G +G GG +G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 197 GGAGGSGTTSYGAAGVGGNALLFGNGGTGGSGLGGGGNGGNAVFGNGGAGGAGVAGI 253 G GG+G + G+ G + + G L G GG AV + GA A +A I Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 38.9 bits (90), Expect = 9e-05 Identities = 36/120 (30%), Positives = 41/120 (34%), Gaps = 21/120 (17%) Query: 478 AGGDGGGGNQGAAAGDGGSGGTAAGLFGAGGTGGTGGTGGTTTANGGTGGAAGVGGSGGD 537 +GGDG G N GA + G G GL GG G GG G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS--------- 52 Query: 538 ASSLIALGGTGGVGGVGGAATGGGATIGADGGTGGNGGNATGLLNFG----GSGGAGGAG 593 G GG G GG G GTGGN + FG + GAGG Sbjct: 53 --------GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.8 bits (87), Expect = 2e-04 Identities = 36/118 (30%), Positives = 42/118 (35%), Gaps = 8/118 (6%) Query: 384 GHGGNGGNGGTDGLLFGKGGAGGDGGAGGGTTSSGTGGSGGTGGTGGSSFIGSGGTGGAG 443 G G N G T G + GG G G GG + SG G G S I GG G G Sbjct: 6 GRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 444 GAGGTATGSGASGAGGAGGSGGYNGFIGAGGTGGAGGDGGGGNQGAAAGDGGSGGTAA 501 GG +GG G+GG + A G G G A +AA Sbjct: 64 NGGG------NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 37.4 bits (86), Expect = 3e-04 Identities = 36/126 (28%), Positives = 43/126 (34%), Gaps = 7/126 (5%) Query: 435 GSGGTGGAGGAGGTATGSGASGAGGAGGSGGYNGFIGAGGTGGAGGDGGGGNQGAAAGDG 494 G G GA G G G G G GG + G G G G G G Sbjct: 6 GRGHNTGAHSTSGNING----GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 495 GSGGTAAGLFGAGGTGGTGGTGGTTTANGGTG-GAAGVGGSGGDASSLIALGGTGGVGGV 553 G G +GG GTGG A G A G+GG A S+ A + + + Sbjct: 62 HGNGGGNG--NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Query: 554 GGAATG 559 A G Sbjct: 120 MAALKG 125 Score = 37.0 bits (85), Expect = 4e-04 Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 8/135 (5%) Query: 506 AGGTGGTGGTGGTTTANGGTGGAAGVGGSGGDASSLIALGGTGGVGGVGGAATGGGATIG 565 +GG G TG +T+ GG G+G GG + G G +G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDG----SGWSSENNPWGGGSGSGIHWG 57 Query: 566 ADGGTGGNGGNATGLLNFGGSGGAGGAGGAGATTGVQGAGGMGGTPGGQPGAAAVSALLP 625 G G GGN N GG G GG A A G + G + + L Sbjct: 58 GGSGHGNGGGNG----NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Query: 626 GGLASSTAAVGGAYQ 640 +A AA+ G ++ Sbjct: 114 AAIADIMAALKGPFK 128 Score = 36.6 bits (84), Expect = 4e-04 Identities = 32/107 (29%), Positives = 39/107 (36%), Gaps = 11/107 (10%) Query: 119 GIDGTATNPNGGDGGLLYGNGGN---GYSQTDGGLAGGKGGNAGLIGNGGAGGNGGDYLV 175 G T+ N NGG GL G G + G+S + GG G G G G G Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG----- 66 Query: 176 GGGGAGGAGGNGGVLYGNGGTGGAGGSGTTSYGAAGVGGNALLFGNG 222 G G +GG G GG G + G GG A+ G Sbjct: 67 GNGNSGGGSGTGG---NLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 35.1 bits (80), Expect = 0.001 Identities = 28/82 (34%), Positives = 33/82 (40%) Query: 208 GAAGVGGNALLFGNGGTGGSGLGGGGNGGNAVFGNGGAGGAGVAGIGGNGGNTFIGTGGA 267 G G G N G G G G GG A G+G + G G G + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 268 GGAGGGTILGGGSHAGGDGGSV 289 G GG GGGS GG+ +V Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 33.5 bits (76), Expect = 0.004 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 544 LGGTGGVGGVGGAATGGGATIGADGGTGGNGGNATGLLNFGGSGGAGGAGGAGATTGVQG 603 + G G G GA + G G G G GG + G G G G+ +G+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDG----SGWSSENNPWGGGSGSGIHW 56 Query: 604 AGGMGGTPGGQPGAAAVSALLPGGLASSTAAVGGAYQDLFT 644 GG G GG G + + G L++ A V + L T Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALST 97 Score = 33.1 bits (75), Expect = 0.005 Identities = 29/92 (31%), Positives = 33/92 (35%), Gaps = 10/92 (10%) Query: 242 NGGAGGAGVAGIGGNGGNTFIGTGGAGGAGGGTILGGGSHAGGDGGSVGLWGSGGVGGAG 301 +GG G G GN G G G GG S G WG GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVG------GGASDGSGWSSENNPWG----GGSG 51 Query: 302 TTPDADSGYAGGDGGNGGNGGLLYGDGGAGGA 333 + G G+GG GN G G GG A Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 31.6 bits (71), Expect = 0.017 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 309 GYAGGDGGNGGNGGLLYGDGGAGGAGGLGSDYSSLFYNAGNGGNGGV--GGNASLVGNGG 366 G+ G GN G GG GS +SS G G G+ GG + GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 367 AGGAGGAGGTGSSLS 381 G +GG GTG +LS Sbjct: 68 NGNSGGGSGTGGNLS 82 Score = 31.6 bits (71), Expect = 0.018 Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 6/89 (6%) Query: 293 GSGGVGGAGTTPDADSGYAGGDGGNGGNGGLLYGDGGAGGAGGLGSDYSSLFYNAGNGGN 352 G G G GG G G GG G G + G S + G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 353 GGVGGNASLVGNGGAGGAGGAGGTGSSLS 381 G G GNG +GG G GG S+++ Sbjct: 63 GNGG------GNGNSGGGSGTGGNLSAVA 85
>cloacin#Cloacin signature. Length = 551 Score = 40.9 bits (95), Expect = 2e-05 Identities = 37/94 (39%), Positives = 46/94 (48%), Gaps = 13/94 (13%) Query: 434 MNGGDGGNGGTGLGVGGAGGAGGTGNINGGDGGNGGNGGKALIIGAAGGAGGTGDINGGG 493 M+GGDG TG +GNINGG G G GG A+ G+G + + N G Sbjct: 1 MSGGDGRGHNTG-------AHSTSGNINGGPTGLGVGGG------ASDGSGWSSENNPWG 47 Query: 494 GGNGGNSLGVGGAGGAGGEGSTEDGGAGGTGGNG 527 GG+G GG+G G G+ GG GTGGN Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 39.7 bits (92), Expect = 4e-05 Identities = 34/97 (35%), Positives = 40/97 (41%), Gaps = 19/97 (19%) Query: 509 AGGEGSTEDGGAGGTGGNGVVTGGAGGAGGNGDINGGVGGNGGTGGFAAGTGGAGGNGDN 568 +GG+G + GA T GN INGG G G GG + G+G + N Sbjct: 2 SGGDGRGHNTGAHSTSGN---------------INGGPTGLGVGGGASDGSGWSSENNPW 46 Query: 569 IGGDGGNGGDALMIGGAGGAGGNGDFNGSGGHGGTGG 605 GG G GG G G G SGG GTGG Sbjct: 47 GGGSGSGIHW----GGGSGHGNGGGNGNSGGGSGTGG 79 Score = 37.8 bits (87), Expect = 1e-04 Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 3/108 (2%) Query: 334 GNGGHGGNGGDGGTTGIARGDNGGDGGNGGNGGWFGTAGNGGIGGDGIGGGYGGDGGGGL 393 G G G N G T+G G G G GG G + G G G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 394 TIGGAGGAGGEGSMGDGGIGGDG---GFGGFAAGSGGAGGDGAMNGGD 438 GG G G GS G + FG A + GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 37.8 bits (87), Expect = 2e-04 Identities = 39/110 (35%), Positives = 47/110 (42%), Gaps = 16/110 (14%) Query: 480 AGGAGGTGDINGGGGGNGGNSLGVGGAGGAGGEGSTEDGGAGGTGGNGVVTGGAGGAGGN 539 G +G+INGG G LGVGG G S+E+ GG G+G+ GG G Sbjct: 11 TGAHSTSGNINGGPTG-----LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG---- 61 Query: 540 GDINGGVGGNGGTGGFAAGTGGAGGNGDNIGGDGGNGGDALMIGGAGGAG 589 GNGG G + G G GGN + G AL GAGG Sbjct: 62 -------HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.4 bits (86), Expect = 2e-04 Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 357 GDGGNGGNGGWFGTAGNGGIGGDGIGGGYGGDGGGGLTIGGAGGAGGEGS---MGDGGIG 413 G G G N G T+GN G G+G G G G G + GG GS G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 414 GDGGFGGFAAGSGGAGGDGAMNGGDGGNGGTGLGVGGAGGAG 455 G+GG G + G G GG+ + G L GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.6 bits (84), Expect = 3e-04 Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 315 SGWFGNGGNGGDGGTSGWF--GNGGHGGNGGDGGTTGIARGDNGGDGGNGGNGGWFGTAG 372 SG G G N G TSG G G G GG +G + +N GG+G W G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 373 NGGIGGDGIGGGYGGDGGGG 392 +G GG+G GG G G GG Sbjct: 62 HGNGGGNGNSGG--GSGTGG 79 Score = 35.1 bits (80), Expect = 0.001 Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Query: 279 GNGGGAGDTGLFGHGGNGGNARGLFGHGGNGGDGGTSGWFGNGGNGGDGGTSGWFGNGGH 338 G G +TG GN G GG DG N GG G W G GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 339 GGNGGDGGTTGIARGDNGGDGGNG 362 G GG+G + G G GGN Sbjct: 63 GNGGGNGNS-----GGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 0.001 Identities = 31/115 (26%), Positives = 43/115 (37%) Query: 395 IGGAGGAGGEGSMGDGGIGGDGGFGGFAAGSGGAGGDGAMNGGDGGNGGTGLGVGGAGGA 454 + G G G +GG G G G + G G + + GG+G G+ GG+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 455 GGTGNINGGDGGNGGNGGKALIIGAAGGAGGTGDINGGGGGNGGNSLGVGGAGGA 509 G G+ G G G L AA A G ++ G G S+ G A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 34.3 bits (78), Expect = 0.002 Identities = 31/103 (30%), Positives = 42/103 (40%) Query: 422 AAGSGGAGGDGAMNGGDGGNGGTGLGVGGAGGAGGTGNINGGDGGNGGNGGKALIIGAAG 481 + G G GA + NGG G G + G+G + + GG+G G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 482 GAGGTGDINGGGGGNGGNSLGVGGAGGAGGEGSTEDGGAGGTG 524 G G+ N GGG G +L A A G + GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.5 bits (76), Expect = 0.003 Identities = 31/83 (37%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 161 GAGAVGGAGGAAGLFGNGGNGGTGGWSGHGGAGGRGGWLIGNGGTGGNGGLSGNGAAGGT 220 G G GA GN NGG G GGA GW N GG G SG GG+ Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSG-SGIHWGGGS 60 Query: 221 GGWLAGNGGNGGTGVLGGNGGDA 243 G G GN G G G A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.003 Identities = 37/108 (34%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 377 GGDGIGGGYGGDGGGGLTIGGAGGAGGEGSMGDGGIGGDGGFGGFAAGSGGAGGDGAMNG 436 GGDG G G G GG G G G DG G+ GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS-----GWSSENNPWGGGSGSGIHWG 57 Query: 437 GDGGNGGTGLGVGGAGGAGGTGNINGGDGGNGGNGGKALIIGAAGGAG 484 G G+G G G G +GG GTG G AL AGG Sbjct: 58 GGSGHGNGG-GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.008 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 176 GNGGNGGTGGWSGHGGAGGRGGWLIGNGGTGGNGGLSGNGAAGGTGGWLAGNGGNGGTGV 235 G G N G SG+ GG G +G G + G+G S N GG G GG G G Sbjct: 6 GRGHNTGAHSTSGNIN-GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 236 LGGNGGDARGLFGHGGNAGGA 256 GGNG G G + A Sbjct: 65 GGGNGNSGGGSGTGGNLSAVA 85 Score = 30.8 bits (69), Expect = 0.018 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 6/96 (6%) Query: 239 NGGDARGLFGHGGNAGGANDYRLFDTGGNGGHSGRLYGNGGNGGGAGDTGLFGHGGNGGN 298 +GGD RG + G + GG G + G+G + + G G+G + Sbjct: 2 SGGDGRGHNTGAHSTSGNIN------GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 299 ARGLFGHGGNGGDGGTSGWFGNGGNGGDGGTSGWFG 334 G GHG GG+G + G G GGN FG Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 30.5 bits (68), Expect = 0.024 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 147 GNGGNGAAGAIEQHGAGAVGGAGGAAGLFGNGGNGGTGGWSGHGGAGGRGGWLIGNGGTG 206 G G G GG G G G + G+G S + GG G I GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV--GGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 207 GNGGLSGNGAAGGTGG 222 G+G GNG +GG G Sbjct: 61 GHGNGGGNGNSGGGSG 76
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 29.7 bits (66), Expect = 0.006 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%) Query: 74 GLKRRPTGATALSADGLHDLLVRLRADYYCQ-RNDLVDPI 112 GL+ TA G+ L+ LRA YY N + + Sbjct: 144 GLEDSGRTYTADDDKGIPTLVEFLRAGYYLGFYNKQLSYL 183
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 1e-04 Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 10/181 (5%) Query: 270 VLEELDKRAVGLDRDERKLQRSDERASAAIERAEAAGESEATLARAQTVLSRLLSDLPEL 329 VL +L A+G + D K Q S +A R + S + L E Sbjct: 123 VLLKLT--ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP------DEP 174 Query: 330 AAEKTRLEEERQALELEAKQLVSDEESLQLLRAAALEKERALKTIEKEVLAASNALQKAS 389 + EE + L +Q + + +K T+ + N + Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 390 ERLEEYRRLALEERTAAKTLAALEVEQQGAEKNLAKARAAEHQARSEAETAAAALAHIQR 449 RL+++ L + A A LE E + E + E+E +A + Sbjct: 235 SRLDDFSSLL--HKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLV 292 Query: 450 K 450 Sbjct: 293 T 293
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 29.0 bits (65), Expect = 0.017 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 175 AVMPLIPYLLGFG-SLSAGLIFGGAGLLIAGGVTARFTRK 213 ++ L+P + G S FGG +LI GV ++ Sbjct: 383 GLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQ 422
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 31.0 bits (70), Expect = 0.012 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 5/49 (10%) Query: 237 VDNGRITFDHVR-IPRVNLLNRYGDVATDGT----YSSPIDNPNRRFFT 280 G++ I R+ LL +YG + D T P F Sbjct: 124 WQEGKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKVPNYIVESNRFM 172
>cloacin#Cloacin signature. Length = 551 Score = 32.8 bits (74), Expect = 0.004 Identities = 27/79 (34%), Positives = 32/79 (40%) Query: 307 GVGNIGNTNIGSGNIGDTNFGSGNIGSLNFGSGNSGSNNIGFGNFGSSNFGFGNTGNNNI 366 G G+ + SGNI G G G + GSG S NN G GS G +G+ N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 367 GFGLTGDGQFGIGGLNSGS 385 G G G GG S Sbjct: 66 GGNGNSGGGSGTGGNLSAV 84 Score = 32.0 bits (72), Expect = 0.009 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 472 NSGDVNT-GFLNAGNINSGFGNAGNVNTGWANAGDINTGGFNGGVLNTGFFSATTHAGPN 530 N+G +T G +N G G G + +GW++ + GG G+ H G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI----------HWGGG 59 Query: 531 SGYFNVGTGNSGFGHNDPSGSGNSGLQNSGFG 562 SG+ N G + G + G+ ++ FG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 30.1 bits (67), Expect = 0.030 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 6/105 (5%) Query: 297 GSGNIGSINFGVGNIGNTNIGSGNIGDTNFGSGNIGSLNFGSGNSGSNNIGFGNFGSSNF 356 G G+ + GNI G G G + GSG N G SGS G G N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 357 GFGNTGNNNIGFGLTGDG-----QFGIGGLNS-GSGNIGLFNSGD 395 G G G FG L++ G+G + + S Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>cloacin#Cloacin signature. Length = 551 Score = 33.1 bits (75), Expect = 0.003 Identities = 26/77 (33%), Positives = 33/77 (42%) Query: 281 TGNTGSGNAGDYNFGSGNFGSGNLGSGNIGSLNLGSGNFGTLNLFGGNNGDLGLGSGNTG 340 +G G G+ + SGN G G G G + GSG N +GG +G G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 341 DVNVGSGNNGGGNIGFG 357 N G N GG G G Sbjct: 62 HGNGGGNGNSGGGSGTG 78 Score = 31.6 bits (71), Expect = 0.011 Identities = 29/100 (29%), Positives = 38/100 (38%) Query: 235 GIGNVGTFNLGSGNLGNTNLGSGNVGNQNVGSGNYGSGNWGGGNTGTGNTGSGNAGDYNF 294 G G+ + SGN+ G G G + GSG N GG +G+G G +G N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 295 GSGNFGSGNLGSGNIGSLNLGSGNFGTLNLFGGNNGDLGL 334 G G G+G S FG L G L + Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAV 105 Score = 31.6 bits (71), Expect = 0.012 Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 256 SGNVGNQNVGSGNYGSGNWGGGNTGTGNTGSGNAGDYNFGSGNFGSGNLGSGNIGSLNLG 315 SG G + + SGN GG TG G G + G N G GSG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 316 SGNFGTLNLFGGNNGDLGLGSGNTGD 341 GN GG NG+ G GSG G+ Sbjct: 62 HGN-------GGGNGNSGGGSGTGGN 80 Score = 31.6 bits (71), Expect = 0.012 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 327 GNNGDLGLGSGNTGDVNVGSGNNGGGNIGFGNLGDNNIGFGNKGSGNIGFGLTGDGQFGI 386 G+N SGN G G GG + G G +NN G GSG G +G G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 387 GGFNSGTGN 395 G NSG G+ Sbjct: 68 NG-NSGGGS 75
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 26.0 bits (57), Expect = 0.037 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 6 VRSTRQRAAISALLETVDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASAGTVDTLRT 65 + ++ I ++ T ++ + EL D L++ G N+ TV R ++ + V T Sbjct: 1 MNKGQRHIKIREII-TANEIETQDELVDILKKDGYNVTQATVSRDIKEL---HLVKV-PT 55 Query: 66 DTGESVY 72 + G Y Sbjct: 56 NNGSYKY 62
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-04 Identities = 35/105 (33%), Positives = 38/105 (36%), Gaps = 3/105 (2%) Query: 484 GGGGRGGTGGAGGIGGTTTGGGDAGAGGGGGAGGTGGSGGEGGAGGFGGDGGAGGTGGKA 543 GG GRG GA G GG GGG + G+G S GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 544 GAGGDGGNATDGGNAGAGGDGGTGGAGGTGGGIVTGINGGAGGAG 588 G GG GN G G + A G GAGG Sbjct: 63 GNGGGNGN---SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 38.5 bits (89), Expect = 1e-04 Identities = 33/101 (32%), Positives = 40/101 (39%) Query: 440 TGGDGGKGGGGGNATDGGHGGNGGTGGTAGDGGNGQSGDLNANGGGGGRGGTGGAGGIGG 499 +GGDG G ++T G G G G +G N GGG G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 500 TTTGGGDAGAGGGGGAGGTGGSGGEGGAGGFGGDGGAGGTG 540 GGG+ +GGG G GG + A GF G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 37.8 bits (87), Expect = 2e-04 Identities = 39/116 (33%), Positives = 43/116 (37%), Gaps = 4/116 (3%) Query: 558 AGAGGDGGTGGAGGTGGGIVTGINGGAGGAGG-DGGDSGNGGNATGGGNGGNGGTAGTGG 616 +G G G GA T G I G G G G DG + N GGG+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 617 AGGLGGGGFRVGHGGGGGNGGNGGVGGTATAGGDAGSGGTGGVGGDGSVGGDASDA 672 G GG G GGG G GGN A G G G S+ A A Sbjct: 62 HGNGGGNG---NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114 Score = 37.0 bits (85), Expect = 3e-04 Identities = 29/90 (32%), Positives = 34/90 (37%) Query: 531 GGDGGAGGTGGKAGAGGDGGNATDGGNAGAGGDGGTGGAGGTGGGIVTGINGGAGGAGGD 590 GGDG TG + +G G T G G DG + G +G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 591 GGDSGNGGNATGGGNGGNGGTAGTGGAGGL 620 G GNG + G G GGN A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92 Score = 36.6 bits (84), Expect = 4e-04 Identities = 28/80 (35%), Positives = 36/80 (45%) Query: 539 TGGKAGAGGDGGNATDGGNAGAGGDGGTGGAGGTGGGIVTGINGGAGGAGGDGGDSGNGG 598 +GG G ++T G G G GG G G + N GG+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 599 NATGGGNGGNGGTAGTGGAG 618 + GGGNG +GG +GTGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 36.6 bits (84), Expect = 4e-04 Identities = 28/85 (32%), Positives = 34/85 (40%) Query: 461 NGGTGGTAGDGGNGQSGDLNANGGGGGRGGTGGAGGIGGTTTGGGDAGAGGGGGAGGTGG 520 +GG G G + SG++N G G GG G + G+G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 521 SGGEGGAGGFGGDGGAGGTGGKAGA 545 G GG G GG G GG A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 34.7 bits (79), Expect = 0.002 Identities = 25/72 (34%), Positives = 31/72 (43%) Query: 723 GHGGGAGGAGGDAGDGGKGGDALDGGTAGAGGAGGKAGNGGGAGSGGKGTFDGGAGGAGG 782 GH GA G+ G G G + G+G + GGG+GSG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 783 DGGKAGNGGAGG 794 +G G G GG Sbjct: 68 NGNSGGGSGTGG 79 Score = 34.3 bits (78), Expect = 0.002 Identities = 26/80 (32%), Positives = 33/80 (41%) Query: 371 AGNTGTGGTGGTGGTGGNGDLHTNGGNGGTGGSGGAGIAGVGGGNGGTGGDGGKGGTGAN 430 +G G G G T GN + G G G S G+G + GG G G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 431 GAPLGASGGTGGDGGKGGGG 450 G +G +GG G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.003 Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 631 GGGGNGGNGGVGGTA-TAGGDAGSGGTGGVGGDGSVGGDASDAVAGGDGGTGGRGGSGGA 689 GG G G N G T+ G G GG DGS ++ GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 690 GGIATGGGSAGHGGVGGGG 708 G G S G G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.003 Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 353 AGRGGAAGAGGPLVTPGHAGNTGTGGTGGTGGTGGNGDLHTNGGNGGTGGSGGAGIAGVG 412 +G G G T G+ TG G G + G+G N GG GSG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 413 GGNGGTGGDGGKG-GTGANGAPLGA 436 GNGG G+ G G GTG N + + A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.004 Identities = 24/80 (30%), Positives = 30/80 (37%) Query: 526 GAGGFGGDGGAGGTGGKAGAGGDGGNATDGGNAGAGGDGGTGGAGGTGGGIVTGINGGAG 585 G G G + GA T G G G G + G+G GG G + G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 586 GAGGDGGDSGNGGNATGGGN 605 G GG G+SG G G + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 33.1 bits (75), Expect = 0.005 Identities = 29/110 (26%), Positives = 37/110 (33%) Query: 415 NGGTGGDGGKGGTGANGAPLGASGGTGGDGGKGGGGGNATDGGHGGNGGTGGTAGDGGNG 474 +GG G G +G G G G GG G G +++ G G G GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 475 QSGDLNANGGGGGRGGTGGAGGIGGTTTGGGDAGAGGGGGAGGTGGSGGE 524 GGG G G + G A + G G S G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.005 Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 265 AGSGGSGGAGGDGAPGDTAGAGGTGGTGSAGGAGGTGGAGGANQFFGHAGDGGHGGTGGT 324 +G G G G + G TG G + G+G + N + G +G G H G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 325 GGTGGAGGSGVGSGLAGGAGGDGGAGGAAGRGGAA--GAGGPLVT 367 G GG G+ G GG A A G + GAGG V+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 31.6 bits (71), Expect = 0.017 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 395 GGNGGTGGSGGAGIAGVGGGNGGTGGDGGKGGTGANGAPLGASGGTGGDGGKGGGGGNAT 454 G N G + G G G G G G G + N G SG GG G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN--- 64 Query: 455 DGGHGGNGGTGGTAGDGGNGQS 476 GG GN GG +G GGN + Sbjct: 65 -GGGNGNS--GGGSGTGGNLSA 83 Score = 30.8 bits (69), Expect = 0.025 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 1/89 (1%) Query: 321 TGGTGGTGGAGGSGVGSGLAGGAGGDGGAGGAAGRGGAAGAGGPLVTPGHAGNTGTGGTG 380 +GG G G + GG G G GGA+ G + P G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPW-GGGSGSGIHWGGGS 60 Query: 381 GTGGTGGNGDLHTNGGNGGTGGSGGAGIA 409 G G GGNG+ G GG + A +A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 30.8 bits (69), Expect = 0.026 Identities = 24/79 (30%), Positives = 29/79 (36%) Query: 146 GSGAPGQRGGAGGAGGLLLGNGGAGGAGGVGALGQASGTGGNGGAGGLLFGKGGAGGAGG 205 G G GA G + G G GG + G + N GG G GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 206 VGGLGQAGGTGGNGGAGGL 224 G G GG+G G L Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.028 Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 2/95 (2%) Query: 213 GGTGGNGGAGGLLFGNGGAGGVGGAGGVGGVDSAGGTGGTGGTGGANGLFGAAGSGGSGG 272 G G G + G GVGG G S+ GG+G G +G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 273 AGGDGAPGDTAGAGGTGGTGSAGG--AGGTGGAGG 305 G G T G A G A T GAGG Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.5 bits (68), Expect = 0.031 Identities = 33/103 (32%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Query: 171 GAGGVGALGQASGTGGNGGAGGLLFGKGGAGGAGGVGGLGQAGGTGGNGGAGGLLFGNGG 230 G G G A T GN G G GG G + G G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 231 AGGVGGAGGVGGVDSAGGTGGTGGTGGANGLFGAAGSGGSGGA 273 G GG G GG GG A G + G G A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.5 bits (68), Expect = 0.032 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 651 AGSGGTGGVGGDGSVGGDASDAVAGGDGGTGGRGGSGGAGGIATGGGSAGHGGVGGGGGN 710 +G G G G S G+ + G G G GSG + GG G G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGG--GSGSGIHWGGG 59 Query: 711 GGHGTDGTAGVAGHGGGAGGAG 732 GHG G G +G G G GG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNL 81
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 2e-11 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 11/167 (6%) Query: 6 RNAQANRRQRREQMECRLLEATERLMNNGASFTELSVDRLATEAGISRASFYIYFDDKGH 65 R + ++ R+ +L+ RL + + S+ +A AG++R + Y +F DK Sbjct: 3 RKTKQEAQETRQ----HILDVALRLFSQQ-GVSSTSLGEIAKAAGVTRGAIYWHFKDKSD 57 Query: 66 LLRRLAGQVFDDLATGAQHWWDVAWRHDPDDVRAAMRAII------ARYRRHQPILIALN 119 L + ++ + +R + ++ R R I+ Sbjct: 58 LFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC 117 Query: 120 EMAGYDPQTAQTYRDILTAISARLARVIEDGQADGSIRPELSATTTA 166 E G Q R++ R+ + ++ + +L A Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 5e-04 Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 4/118 (3%) Query: 649 IGGAGGDGGAGGKAQAAGFADGTEGVGGAGGEGGAGGVAGD----GGKGADAAAFSGAAG 704 + G G G G +G +G G GG G G G+ + G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 705 GNGGHGGDNGAGGAGGTGGAGSTVGAHGADGFSPITGGNGGDGGNGASGPAASAGVAG 762 G+G GG+ +GG GTGG S V A A GF ++ G S A SA +A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 37.0 bits (85), Expect = 7e-04 Identities = 38/119 (31%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 423 NGGNGGVGGAGGVGGSGGQGGFLRFLGGQGDGGAGGAGGAGGVAGDGGKGADAAAFSGAA 482 +GG+G G SG G LG G G + GG G+ G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 483 GGNGGHGGDNGAGGAGGTGGAGSTVGAHGADGFSPITGGNGGDGGNGASGPAASAGVAG 541 GNGG G +GG GTGG S V A A GF ++ G S A SA +A Sbjct: 62 HGNGGGNG--NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 37.0 bits (85), Expect = 8e-04 Identities = 34/81 (41%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Query: 234 AGGQGLGLNGGAGGAGGN--GGLFGIGGTGGAGGDSAGSGSAGAGGDG-GHGGLWGRGGA 290 +GG G G N GA GN GG G+G GGA S S G G G G WG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 291 GGIGGVNSDSGDGGAGGGGGA 311 G GG N +SG G GG + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 35.8 bits (82), Expect = 0.002 Identities = 30/89 (33%), Positives = 33/89 (37%) Query: 1618 GNGGSGGNGGIGGNATGFNAPGTGGAGGNGGNGAFGGSGGTGGRGGSSSVGTGGAGGDGG 1677 G G G N G + N TG G G + G S GG S G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1678 DGGMGFGGIGGGGGTGGQGGSGVDAQGIG 1706 G G G GGG GTGG + G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 34.7 bits (79), Expect = 0.004 Identities = 36/103 (34%), Positives = 41/103 (39%), Gaps = 1/103 (0%) Query: 798 AGASGENGGDGGAGGMGGAGGMGGVLGGHGGAGGIGGVGATGGSGGLGATGAEGVTGGNL 857 +G G G G G LG GGA G + G G+ GG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 858 HGGDGGNGGKGGIGGAGGDGGAGGKAQAAGF-ADGTEGAGGAG 899 HG GGNG GG G GG+ A A GF A T GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.3 bits (78), Expect = 0.005 Identities = 34/118 (28%), Positives = 40/118 (33%) Query: 1018 NGGDGHTGLTGGDGGAGGKGGALAGHGGDGGTGGVGGTGGTGGSGGTGTSGIFSSANGGD 1077 +GGDG TG +G G G G GG G G G+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1078 GGNGGDGGTGGTGGVGGLGGQAQAAGFADGTQGVGGAGGVGGTGGNAGNGGHGANADV 1135 GNGG G G G G A AA A G + G G + A AD+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 33.9 bits (77), Expect = 0.007 Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 5/116 (4%) Query: 1240 GTGGTGGQGGAGGSGGALAGHGGDGGSGGDGGTGGTGGTGRNGANGITGADI----DGGS 1295 G G G GA + G + G G GG G + N G +G+ I G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1296 GGKGGNGGTGGAGGAGGQGGQAQAAGYSDGTQGVGGAGGDGGTAGIGGDGGDGANA 1351 G GGNG +GG G GG A AA + G + G G I A A Sbjct: 63 GNGGGNGNSGGGSGTGG-NLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 33.9 bits (77), Expect = 0.007 Identities = 27/81 (33%), Positives = 35/81 (43%) Query: 993 GNGGTGGTGGTGGIGFNGSTTIGGGNGGDGHTGLTGGDGGAGGKGGALAGHGGDGGTGGV 1052 G G G T G G T +G G G +G + + GG G+ GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1053 GGTGGTGGSGGTGTSGIFSSA 1073 GG G +GG GTG + +A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.010 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 870 IGGAGGDGGAGGKAQAAGFADGTEGAGGAGGEGGAGGVAGD----GGKGADAAAFSGAAG 925 + G G G G +G +G G GG G G G+ + G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 926 GNGGHGGDNGAGGAGGTGGAGSTVGAHGADGF 957 G+G GG+ +GG GTGG S V A A GF Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92 Score = 33.1 bits (75), Expect = 0.010 Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 577 AGASGENGGDGGAGGMGGAGGMGGVLGGHGGAGGIGGVGATGGSGGLGATGAEGVTGGNL 636 +G G G G G LG GGA G + G G+ GG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 637 HGGDGGNGGKGGIGGAGGDGGAGGKAQAAGF-ADGTEGVGGAG 678 HG GGNG GG G GG+ A A GF A T G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.014 Identities = 28/83 (33%), Positives = 36/83 (43%) Query: 1584 GGDGGGGGPGGLGGQGGLSGDGSSTGAAGELGTFGNGGSGGNGGIGGNATGFNAPGTGGA 1643 GGDG G G G ++G + G G S N GG+ +G + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1644 GGNGGNGAFGGSGGTGGRGGSSS 1666 G GGNG GG GTGG + + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.4 bits (73), Expect = 0.019 Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Query: 1201 SGGDGGLYGNGGDGGDGG-NGGKGQVGSTGPVAGSAGGTGGTGGTGGQGGAGGSGGALAG 1259 SGGDG + G G NGG +G G + +G + GG G+G G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1260 HGGDGGSGGDGGTGGTGGTGRNGA 1283 HG GG+G GG GTGG A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.0 bits (72), Expect = 0.025 Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 1/117 (0%) Query: 1058 TGGSGGTGTSGIFSSANGGDGGNGGDGGTGGTGGVGGLGGQAQAAGFADGTQGVGGAGGV 1117 +GG G +G S++ +GG G G GG G + G G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1118 GGTGGNAGNGGHGANADVGSGKAGGNGGDGGDPGVGGIGGQGGAGSIAGVEGAAGVA 1174 G GG GN G G + G+ A G P + G G A SI+ +A +A Sbjct: 62 HGNGGGNGNSG-GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 32.0 bits (72), Expect = 0.025 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 1415 GAGGAGGDGGLYGNGGN--GGDGGTGGKGTVGD-SGATLSADGDRGGAGATGGVGGAGGD 1471 G G G + G + GN GG G G G D SG + + GG+G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1472 GGAKGGNGGLGGSGGTGGMGGTGGDGAHGADMASGSGANG 1511 G G GGSG G + A G S GA G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.0 bits (72), Expect = 0.029 Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 3/99 (3%) Query: 261 GGAGGDSAGSGSAGAGGDGGHGGLWGRGGAG---GIGGVNSDSGDGGAGGGGGAGGRLFG 317 G G + G+ S +GG GL GGA G N+ G G G GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 318 SGGAGGAGGTGAVAGSGGDGGAGGAAVGLWGLGGHGGAG 356 +GG G G G+ G A A G L G G Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.032 Identities = 22/83 (26%), Positives = 30/83 (36%) Query: 1116 GVGGTGGNAGNGGHGANADVGSGKAGGNGGDGGDPGVGGIGGQGGAGSIAGVEGAAGVAP 1175 G G G N G N + G G GG G G GS +G+ G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1176 TSGGNGGDGGNGASGATGVNGGA 1198 +GG G+ G G+ ++ A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVA 85 Score = 31.6 bits (71), Expect = 0.033 Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 941 GTGGAGSTVGAHGADGF--SPTTGGNGGDGGSGGSGFQGVKGGAGGVGGDGGLYGNGGTG 998 G G G GAH G TG G G S GSG+ GG G G +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 999 GTGGTGGIGFNGSTTIGGGN 1018 G GG G GS T G + Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 31.6 bits (71), Expect = 0.034 Identities = 23/73 (31%), Positives = 29/73 (39%) Query: 1193 GVNGGAGGSGGDGGLYGNGGDGGDGGNGGKGQVGSTGPVAGSAGGTGGTGGTGGQGGAGG 1252 G N GA + G+ G G G + G G P G +G GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 1253 SGGALAGHGGDGG 1265 +G + G G G Sbjct: 68 NGNSGGGSGTGGN 80
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 38.7 bits (90), Expect = 2e-05 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 156 DNDRLSALVAHLVGADALVLLSDIDGLYDADPGKFQNARFIPEVSGPADLDGVVAGQGSH 215 D D +A V AD ++L+D++G G + +++ EV +L + H Sbjct: 214 DKDLAGEKLAEEVNADIFMILTDVNGAA-LYYGT-EKEQWLREVK-VEELRKYY--EEGH 268 Query: 216 LGTGGMASKMSSALLAADA-GVPVLLAPAADAAAALTDASVGTV 258 G M K+ +A+ + G ++A A AL + GT Sbjct: 269 FKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEAL-EGKTGTQ 311
>SECA#SecA protein signature. Length = 901 Score = 31.4 bits (71), Expect = 0.009 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 29/101 (28%) Query: 387 IGQTNFDNDEAVGYLADRLARLGVEEELL---------RLGAKPGC--AVTIGEMTFDWE 435 +G + + E +++ L + G++ +L + A+ G AVTI Sbjct: 454 VGTISIEKSE---LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIA------- 503 Query: 436 PQTPAGGHVAMSGRGTDVRLERSDRVGAAERKAARRQRRER 476 M+GRGTD+ L S + A + ++ E+ Sbjct: 504 --------TNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 536
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 34.2 bits (78), Expect = 3e-04 Identities = 24/115 (20%), Positives = 32/115 (27%) Query: 49 PAAPGAFEPPAPQDAPPAPELADADPDLPPPAPDAMIAPVDMPEAPAPEEAPPAPQDAPP 108 PA P + P D P + + P P+ P EAP E P P Sbjct: 41 PAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 100 Query: 109 APEAMIAPVDMPDGPAPEDAPPAPDAFAPPAPEDVPPAPEPVAFEPPAPDVAPPP 163 P + D E P +P PA A + + P Sbjct: 101 KPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 155 Score = 27.6 bits (61), Expect = 0.042 Identities = 28/111 (25%), Positives = 35/111 (31%), Gaps = 12/111 (10%) Query: 74 PDLPPPAPDAMIAPVDMPEAPAPEEAPPAPQDAPPAPEAMIAPVDMPDGPAPEDAPPAPD 133 P P M+ P D+ A + P + P PE P PE AP Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPE-----------PIPEPPKEAPV 87 Query: 134 AFAPPAPEDVP-PAPEPVAFEPPAPDVAPPPAPKVYTVNWDAIAQCESGGN 183 P P+ P P P E P DV P + A A+ S Sbjct: 88 VIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTA 138
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 35.4 bits (81), Expect = 1e-04 Identities = 21/84 (25%), Positives = 33/84 (39%) Query: 138 LTANSWGAAILDGLVVDDIDIHVNKHRMSGFWDTELDSILRNLGVRHLFLCGVNVDQCVY 197 L + + I+ L +D D+ + K R S F T L ++R G L + G+ Sbjct: 99 LNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCL 158 Query: 198 ATLIDAACAGYDCLLITDASATTS 221 T +A + DA A S Sbjct: 159 VTACEAFMEDIKAFFVGDAVADFS 182
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.8 bits (75), Expect = 0.011 Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 38/149 (25%) Query: 1381 TVLITGGTGMAGGWLARHVVDHYGVRHVLLASRSGDRAGGSAEIA-----------AELA 1429 L+TG G G +++ +++ G + G + EL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEA------------GHQVVGIDNLNDYYDVSLKQARLELL 49 Query: 1430 ARGVQVEVVACDVADRDAVTALLARLPQQYPLTGVIH---AAGVLDDAVITSLTPDRVDT 1486 A+ + D+ADR+ + L V V + + Sbjct: 50 AQP-GFQFHKIDLADRE----GMTDLFASGHFERVFISPHRLAV-------RYSLENPHA 97 Query: 1487 VLRAKVDAAWNLHELTRDLGVSAFVLFSS 1515 + + N+ E R + + SS Sbjct: 98 YADSNLTGFLNILEGCRHNKIQHLLYASS 126
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 32.3 bits (73), Expect = 0.016 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 10/164 (6%) Query: 1432 VLITGGTGVLGMALARHLATHHHCEHLLLVSRRGVAADGAQELRAELAGHGCQVEFAACD 1491 ITG +G A+AR LA ++ + +++ + L E D Sbjct: 11 AFITGAAQGIGEAVARTLA-----SQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 1492 TADSDQLSTLLQSIPVE-HPLGAVIHAAGVLSDGVIEGLGREQVEQVLRPKLDAALLLHE 1550 DS + + I E P+ +++ AGVL G+I L E+ E Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 1551 LT----QDLDLSAFVLFSSAAGVLGSPGQANYAAANAFLDALAQ 1590 D + V S + A YA++ A + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTK 169
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 49.7 bits (118), Expect = 1e-07 Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 27/230 (11%) Query: 3276 ALVTGVTGHLGQHIARWLAQAGASHLVLLSRTAAEHPQVAELEKELNSAGITTTSISVDV 3335 A +TG +G+ +AR LA GA ++ ++ ++ L + + DV Sbjct: 11 AFITGAAQGIGEAVARTLASQGAH----IAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 3336 TDRDALAAVVAETRIEHGPIHTVVHAAAHIGLVTTAETTIDEFIKSFAAKALGAENLI-- 3393 D A+ + A E GPI +V+ A + + +E+ +F+ + G N Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 3394 --AVLEDQPPQTFIMFSSAAATWGGTRQGAYAAANAYIEALVT----RLRGRG--CRAIA 3445 + D+ + + S A T AYA++ A L C ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 3446 PA-------WGAWTDDRTTTQEVVGYFSR----IGLNQIS--PDIAFAAL 3482 P W W D+ Q + G I L +++ DIA A L Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 29.4 bits (65), Expect = 0.012 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 18/107 (16%) Query: 88 AMPLLLAGALALSAFLGWQQWQQ---HQVKLAGQQAQQAA--------IAYAQVLTSIDS 136 PL A LSA LG +WQQ + L +Q QQ+A + Q+ +D Sbjct: 220 TQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDD 279 Query: 137 NNVD-------QNFRQVLDGATGEFKDMYTQSSVQLRQLLIDNKASA 176 N Q+ R L+ A + +S +QL Q I ++ + Sbjct: 280 NQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFS 326
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.005 Identities = 19/101 (18%), Positives = 27/101 (26%), Gaps = 7/101 (6%) Query: 155 TSNPLTAIPPLGQPYIQAALDAAAPPHDPGTYPFVADRWTPDKVYSGGYRAWA----LTP 210 N Q L A D G+ FV DR ++ G Y WA + Sbjct: 260 FGNSKEEHSDPKGILSQDPLTNYAVLGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSW 319 Query: 211 DELVLYLPDYPVG---HDEPIDFTPGAAQWSMDGGAVVAHI 248 E +Y + D +S + I Sbjct: 320 QEWNIYKSQFTKDVLNKDSAGSLIGSKTDYSWSSNGKTSTI 360
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 5e-04 Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 6/83 (7%) Query: 163 MIGNGGAGGNGGPAGLILGNLYRGGAGGMGGAGGWLIGDGGAGGTGGFAGIDNGRGGWGG 222 M G G G N G A GN+ GG G+G GG G G + + G WGG Sbjct: 1 MSGGDGRGHNTG-AHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 223 WGGPATMFGSGGAGGNGGDANAG 245 G G+GG GN G + Sbjct: 59 GSGH----GNGGGNGNSGGGSGT 77 Score = 31.6 bits (71), Expect = 0.003 Identities = 31/91 (34%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 156 GAGGMGGMIGNGGAGGN--GGPAGLILGNLYRGGAGGMGGAGGWLIGDGGAGGTGGFAGI 213 G G G G GN GGP GL G GG GW + GG G +GI Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGL-------GVGGGASDGSGWSSENNPWGGGSG-SGI 54 Query: 214 DNGRGGWGGWGGPATMFGSGGAGGNGGDANA 244 G G G GG G G G A A Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 28.1 bits (62), Expect = 0.044 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 7/77 (9%) Query: 140 GNGGRGGDSTAVGIAGGAGGMGGMIGNGGAGGNGG-------PAGLILGNLYRGGAGGMG 192 G GRG ++ A +G G +G GG +G P G G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 193 GAGGWLIGDGGAGGTGG 209 G GG GG GTGG Sbjct: 63 GNGGGNGNSGGGSGTGG 79
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.006 Identities = 18/73 (24%), Positives = 27/73 (36%) Query: 176 DIDFNQTKTTLGSTPTPNPLPTVNNLTVGTIAATTVDLSWTDIPIADSFKVQQSPTGAGT 235 +D L S N + N LTV +++ TD+ KV + + G Sbjct: 864 QLDLANGHIHLNSADNSNNVTKYNTLTVNSLSGNGSFYYLTDLSNKQGDKVVVTKSATGN 923 Query: 236 WTDVTALNGGEPT 248 +T A GEP Sbjct: 924 FTLQVADKTGEPN 936
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 29.3 bits (65), Expect = 0.005 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 17 RLRDNVKDVKPDYERLVDTQMRLA------AVEGEAYMKEHAPWLDSTGNRKDRVPGAAR 70 ++ N D + +R+ D L A E M EH LD GN + + G A Sbjct: 174 SIKLNPTDTRSIRQRISDNYSNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAA 233 Query: 71 SGLN 74 LN Sbjct: 234 GALN 237
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 29.2 bits (65), Expect = 0.037 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 80 KGFAKTELMALIAYAELHPESPVRFDGFNRDGGL-KQGRPVFDPYIPMLANAKLQVNELA 138 + FAK + Y + +PV F G + G+ +G P+F P + KL +L+ Sbjct: 62 EAFAKKDWFDFYGYID----APVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLS 117 Query: 139 FGALK 143 FG K Sbjct: 118 FGPFK 122
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 28.7 bits (63), Expect = 0.044 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 160 VTHYSEYVQTTKVDGVAQPNSMWSKMPRNQLAKCAEALALQRAYPDELSGIVLEDAAQVI 219 +TH + + T VAQ K N + AE LA AY D S VL A Sbjct: 196 LTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYT 255 Query: 220 DSDGQIINETQRPPARARGAAALRDRAKAEA 250 DS E R A A+ L + AKA + Sbjct: 256 DSKSAETLENARKEAFAQSKDVL-NMAKAHS 285
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 28.8 bits (64), Expect = 0.031 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 19/58 (32%) Query: 71 EWLAA-------ITPSKVAAILGVSRFESPYRLWHRMKGLVDPEPPKDIFDVGHDFEP 121 EWL I P VA + YRLW + +P P + DVG EP Sbjct: 42 EWLPVELLLALGIVPYGVADTIN-------YRLW-----VSEPPLPDSVIDVGLRTEP 87
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 31.3 bits (70), Expect = 5e-04 Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 72 YGSRSTAQKRADLLESYGATAIVERSSRI 100 YGS TAQ+R+DL YG+T+ S + Sbjct: 804 YGSTQTAQERSDLTTGYGSTSTAGADSSL 832 Score = 29.0 bits (64), Expect = 0.004 Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 72 YGSRSTAQKRADLLESYGATA 92 YGS TAQ+ +DL YG+T+ Sbjct: 900 YGSTQTAQENSDLTTGYGSTS 920 Score = 28.2 bits (62), Expect = 0.006 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 72 YGSRSTAQKRADLLESYGATAIVERSSRIS 101 YGS TA ++ L YG+T E SS ++ Sbjct: 980 YGSTQTAGYQSTLTAGYGSTQTAEHSSTLT 1009 Score = 28.2 bits (62), Expect = 0.008 Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 72 YGSRSTAQKRADLLESYGATA 92 YGS TAQ +DL+ YG+T+ Sbjct: 516 YGSTQTAQNESDLITGYGSTS 536 Score = 28.2 bits (62), Expect = 0.008 Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 72 YGSRSTAQKRADLLESYGATAIVERSSRI 100 YGS TAQ+ +DL YG+T+ S + Sbjct: 852 YGSTQTAQENSDLTTGYGSTSTAGYDSSL 880 Score = 27.8 bits (61), Expect = 0.009 Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 72 YGSRSTAQKRADLLESYGATA 92 YGS TA++++ L YG+T+ Sbjct: 756 YGSTQTAREQSVLTTGYGSTS 776 Score = 27.8 bits (61), Expect = 0.010 Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 72 YGSRSTAQKRADLLESYGAT 91 YGS TAQK +DL YG+T Sbjct: 372 YGSTQTAQKGSDLTAGYGST 391 Score = 27.8 bits (61), Expect = 0.011 Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 72 YGSRSTAQKRADLLESYGATA 92 YGS TAQK +DL YG+T Sbjct: 276 YGSTQTAQKGSDLTAGYGSTG 296 Score = 27.8 bits (61), Expect = 0.011 Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 72 YGSRSTAQKRADLLESYGATA 92 YGS TA++++ L YG+T+ Sbjct: 612 YGSTQTAREQSVLTTGYGSTS 632 Score = 27.4 bits (60), Expect = 0.011 Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 72 YGSRSTAQKRADLLESYGAT 91 YGS TAQK +DL YG+T Sbjct: 420 YGSTQTAQKGSDLTAGYGST 439 Score = 27.4 bits (60), Expect = 0.012 Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 72 YGSRSTAQKRADLLESYGAT 91 YGS TAQK +DL YG+T Sbjct: 324 YGSTQTAQKGSDLTAGYGST 343 Score = 27.4 bits (60), Expect = 0.014 Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 72 YGSRSTAQKRADLLESYGATA 92 YGS TAQK +DL YG+T+ Sbjct: 468 YGSTQTAQKGSDLTAGYGSTS 488 Score = 27.0 bits (59), Expect = 0.017 Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 72 YGSRSTAQKRADLLESYGATA 92 YGS TAQ+ +DL YG+T+ Sbjct: 660 YGSTQTAQEGSDLTAGYGSTS 680
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 133 bits (337), Expect = 4e-36 Identities = 93/421 (22%), Positives = 188/421 (44%), Gaps = 18/421 (4%) Query: 27 RRNFIFLALVLGILLSSLDQTIVAIALPTIVADLGEAGRQ-SWVVTSYLLASTIATALVG 85 R N I + L + S L++ ++ ++LP I D + +WV T+++L +I TA+ G Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 86 KLGDMFGRKRVFQVAALLFVAGSVSCGLTQSM-TMLVASRALQGVGGGAITVTAIALIGE 144 KL D G KR+ ++ GSV + S ++L+ +R +QG G A + ++ Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130 Query: 145 VVPLRDRGRYQGILGAVIGIATIGGPLLGGYFTDCLSWRWAFWINLPVSAVVICVATAAI 204 +P +RG+ G++G+++ + GP +GG + W++ + +P+ ++ + Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH--WSYLLLIPMITIITVPFLMKL 188 Query: 205 PALAATTRPVIDYAGIMFIGLSLAALTLATSLGGSVYAWGSAPIIGLFTAAGVTLAVFVW 264 + D GI+ + + + L T + Y+ + L +FV Sbjct: 189 LKKEVRIKGHFDIKGIILMSVGIVFFMLFT----TSYSISFLIVSVLS------FLIFVK 238 Query: 265 VETIAAQPILPIRLFAAPVFSVCCVLAFVVGFAMLGALIFVPTFMQYVNGVS-ATASGLR 323 P + L F + + ++ + G + VP M+ V+ +S A + Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI 298 Query: 324 ILPMVIGMLITSIGSGSMVGRTGRYKIFPVLGTALMTLAFLLMSRMDESTSAAVQSVYLL 383 I P + ++I G +V R G + +G ++++FL S + E+TS + + + Sbjct: 299 IFPGTMSVIIFGYIGGILVDRRGPLYVL-NIGVTFLSVSFLTASFLLETTSWFMTIIIVF 357 Query: 384 ILGSAIGMSSQVLVIIVQNTSEFEDLGVATSGVSLFRTIGGSFGAAIFGSLF-VNFLNSR 442 +LG + + V+ IV ++ + ++ G S ++ + G AI G L + L+ R Sbjct: 358 VLGG-LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQR 416 Query: 443 L 443 L Sbjct: 417 L 417
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 62.5 bits (152), Expect = 3e-12 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 44/209 (21%) Query: 662 LVTGATGFLGLYLASRLVELLPE---LDVFCLIRAQSEEQARERLRQSCLRYGMSVALLD 718 LVTGA GF+G +++ RL+E + +D + + ++ R L Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNL----NDYYDVSLKQARLELLAQ-------P 52 Query: 719 RVSVVAGDIEDSALALTDDVYSTLAGRVDTVYHCAADISYVKPYSVMRGP------NVTG 772 D+ D D++++ G + V+ ++ YS + P N+TG Sbjct: 53 GFQFHKIDLAD--REGMTDLFAS--GHFERVFISPHRLAV--RYS-LENPHAYADSNLTG 105 Query: 773 TQNLLKFAVEGHAKSFHYVSTAAVFGATGTFLGINSVDEGFNIDQSLELMSVENGYTQSK 832 N+L+ + Y S+++V+G ++D + L Y +K Sbjct: 106 FLNILEGCRHNKIQHLLYASSSSVYGLNRKM----PFSTDDSVDHPVSL------YAATK 155 Query: 833 WVAETMVQAASH------RGLR-VSIYRP 854 E M SH GLR ++Y P Sbjct: 156 KANELMAHTYSHLYGLPATGLRFFTVYGP 184
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 1e-04 Identities = 27/81 (33%), Positives = 32/81 (39%) Query: 499 GGDGSSSGTGAGGSGGDATDGGTGGDGGSGGGFGTGGAGGTGGWLIGHSGTNGIGGTGGA 558 GGDG TGA + G+ G TG G G G+G + W G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 559 GGAGAVGGDGGVGGDPGVGTT 579 G G G GG G G + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 37.4 bits (86), Expect = 2e-04 Identities = 29/74 (39%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 470 GNGGDGGAGGDGGV--GGTGGIGGAGGNGGVGGDGSSSGTGAGGSGGDATDGGTGGDGGS 527 G G + GA G GG G+G GG G S + GGSG GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 528 GGGFGTGGAGGTGG 541 GG +GG GTGG Sbjct: 66 GGNGNSGGGSGTGG 79 Score = 35.8 bits (82), Expect = 5e-04 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 339 SGGEG-GTGGVAIASGGNAYGGSGGTGGNGATGASGGTGGTGGTGGDG-GHGGLLIGNGG 396 SGG+G G A ++ GN GG G G G G G G G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 397 IGGIGGTGGVGGIGGTGGDG 416 G GG G GG GTGG+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 35.5 bits (81), Expect = 7e-04 Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 291 GNGGSGADGGAGVTGGT--GGVGGFANNEGSGDANGGFGGTGGNGGAPGASGGEGGTGGV 348 G G G + GA T G GG G G+ D +G GG G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 349 AIASGGNAYGGSGGTGGNGATGAS 372 G GG GTGGN + A+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.1 bits (80), Expect = 9e-04 Identities = 32/91 (35%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 471 NGGDGGAGGDGGVGGTGGIGGAGGNGGVGGDGSSSGTGAGGSGGDATDGGTGGDGGSGGG 530 +GGDG G +G I G GVGG S GSG + + GG GSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASD------GSGWSSENNPWGGGSGSGIH 55 Query: 531 FGTGGAGGTGGWLIGHSGTNGIGGTGGAGGA 561 +G G G GG G +G GG A A Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 35.1 bits (80), Expect = 9e-04 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 438 GGDGGDAGTGGDGGTGGV-GGVGGSGGAGGLLFGNGGDGGAGGDGGVGGTGGIGGAGGNG 496 GGDG TG +G + GG G G GG G+G GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 497 GVGGDGSSSGTGAGGSGG 514 G GG +SG G+G G Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 33.9 bits (77), Expect = 0.002 Identities = 27/84 (32%), Positives = 28/84 (33%) Query: 456 GGVGGSGGAGGLLFGNGGDGGAGGDGGVGGTGGIGGAGGNGGVGGDGSSSGTGAGGSGGD 515 GG G G +GG G G GG G G GS SG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 516 ATDGGTGGDGGSGGGFGTGGAGGT 539 GG G GG G G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.9 bits (77), Expect = 0.002 Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 303 VTGGTGGVGGFANNEGSGDANGGFGGTGGNGGAPGASGGE------GGTGGVAIASGGNA 356 ++GG G + SG+ NGG G G GGA SG GG G I GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG- 59 Query: 357 YGGSGGTGGNGATGASGGTGGTG 379 G G GGNG +G GTGG Sbjct: 60 -SGHGNGGGNGNSGGGSGTGGNL 81 Score = 31.2 bits (70), Expect = 0.012 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 420 GVGGSALNTGSGVADANIGGDGGDAGTGGDGGTGGVGGVGGSGGAGGLLFGNGGDGGAGG 479 G G NTG+ NI +GG G G GG G G G+G GG Sbjct: 3 GGDGRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWG--GGSGSGIHWGG 58 Query: 480 DGGVGGTGGIGGAGGNGGVGGDGSSSGT 507 G G GG G +GG G GG+ S+ Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 30.8 bits (69), Expect = 0.016 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 2/82 (2%) Query: 155 GTGGSAGLIGAGGT--GGAGGLGAAGGAGGNGGWLFGQGGAGGIGGSGAAGGAGGNGGWL 212 G G + G G GG GLG GGA GW GG GSG G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 213 YGDGGAGGQGGAAAESINDGSP 234 G+G +GG G +P Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAP 87 Score = 30.5 bits (68), Expect = 0.020 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 2/112 (1%) Query: 131 SGGDGGILYGNGGDGGSGASGQIGGTGGSAGLIGAGGTGGAGGLGAAGGAGGNGGWLFGQ 190 SGGDG +G G G G + G+G + GG G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 191 GGAGGIGGSGAAGGAGGNGGWLYGDGGAGGQGGAAAESINDGSPGQGGNGGS 242 G G GG+G +GG G GG L G A + G + G+ Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 29.7 bits (66), Expect = 0.037 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 317 EGSGDANGGFGGTGGNGGAPGASGGEGG-TGGVAIASGGNAYGGSGGTGGNGATGASGGT 375 +G G G +G G P G GG + G +S N +GG G+G + G+ G Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 376 GGTGGTGGDGGHGG 389 GG G G G G Sbjct: 65 GGGNGNSGGGSGTG 78 Score = 29.7 bits (66), Expect = 0.039 Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 6/110 (5%) Query: 259 LAGADGVNYSNGTAGPGAWGNNVTTSIGDANGGNGGSG------ADGGAGVTGGTGGVGG 312 ++G DG ++ G N T +G G + GSG GG +G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 313 FANNEGSGDANGGFGGTGGNGGAPGASGGEGGTGGVAIASGGNAYGGSGG 362 N G +GG GTGGN A A G +GG A S G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 40.1 bits (93), Expect = 3e-05 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 35/197 (17%) Query: 134 GVMHRDVKPPNILITR-DDFAYLVDFGIASATGDEKLTQLGTAVGTWKYMAPER-FANEE 191 GV+H D+KP N++ R ++D G+ S +G++ T + APE N Sbjct: 265 GVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQP------KGFTESFKAPELGVGNLG 318 Query: 192 VTYRADIYALACVLFECLTG---SPPYRSDSAGTLVT---AHLMD----PV--PQVSTVR 239 + ++D++ + L C+ G +P + + +T AH+MD P+ P ++ V Sbjct: 319 ASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHVMDENGYPIHRPGIAGVE 378 Query: 240 SGIPKAFDAVIARGMAKKPEERYASAGDLARAAHDALSNP--DQDHAADILRRSRESTLP 297 + + ++ +P+ A H+ LS+ D++ A IL+ TL Sbjct: 379 TAYTRFITDILGVSADSRPDSNEAR-------LHEFLSDGTIDEESAKQILK----DTL- 426 Query: 298 GTAAITPQPPTMPAVTP 314 T ++P + +TP Sbjct: 427 -TGEMSPLSTDVRRITP 442
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 8e-12 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 19/155 (12%) Query: 10 ARIRDAAIEQFGQHGF-GVSLRAIAEGAGVSAALVIHHFGSKEGLRKACDNYVAEEIRSE 68 I D A+ F Q G SL IA+ AGV+ + HF K L I E Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG-E 72 Query: 69 KLTAMQSNDPATWLGQLAQV-----------ESYAPLMAYLVRSMQSGGELAMM------ 111 Q+ P L L ++ E LM + + GE+A++ Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 112 LWQQMIDNAEEYLAVGVRAGTIKASRDPKARAKFL 146 L + D E+ L + A + A + A + Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM 167
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 7e-05 Identities = 25/81 (30%), Positives = 33/81 (40%) Query: 483 GGGGTGGDGGNNIIGANVGGDGGAGGAGGLGGNGTDGGWLSGNGGDGGAGGQGGDGGHGG 542 GG G G + G + N+ G G GG +G+ + G G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 543 SPGGFDGKSGVGGDGGDGGNA 563 GG +G SG G G +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 35.5 bits (81), Expect = 6e-04 Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 127 DGAPGQAGGDGGLLYGNGGNGGTSTTAGVAGGDGGAAGLIGNGGAGGGGGAGALGGNGGA 186 +G P G GG + G+G +S GG G G G G GGG G GG G Sbjct: 21 NGGPTGLGVGGG---ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77 Query: 187 GGWLFGQGGAGGNGGTATLAGGAGGAG 213 GG L G A GAGG Sbjct: 78 GGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 34.7 bits (79), Expect = 0.001 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 247 GGGDGGRGGWLYGNGGVGGTGGTGGIGLQGASGGDGGAGGGTGLWGTGGVGGNGGTGGIG 306 G G G G +G + G G+G GGA G+G G G GI Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVG--------GGASDGSGWSSENNPWGGGSGSGIH 55 Query: 307 LDGVAGHIGGGNAGNAGNGGTGGSGG 332 G +GH GG GN+G G G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.001 Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 7/86 (8%) Query: 406 GNAGVAGNGGAGGSAAMLFGNGGAGGNGGSGGDGGHGGNSTVSVPGGIGGDAGAGGTGGS 465 G G N GA ++ + NGG G G GG G S+ + P G G +G GGS Sbjct: 3 GGDGRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 466 AGKSGLLFGAGGAGGQGGGGGTGGDG 491 +G GG G GGG GTGG+ Sbjct: 61 GHGNG-----GGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.002 Identities = 31/86 (36%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 337 NGGDG-GHGGTGGGGGRGINGADGGHGGDGGTGGAAGSAGLLFGDGGTGGHGGAGFGGGN 395 +GGDG GH ING G G G GGA+ +G + GG G+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNING---GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 396 GSDSPQGGQGGNAGVAGNGGAGGSAA 421 GS GG GN+G G SA Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 33.5 bits (76), Expect = 0.003 Identities = 37/105 (35%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 142 GNGGNGGTSTTAGVAGGDGGAAGLIGNGGAGGGGGAGALGG-NGGAGGWLFGQGGAGGNG 200 G G N G +T+G +GG GL GGA G G + GG G GG G+G Sbjct: 6 GRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 201 GTATLAGGAGGAGGVGGSAGLWGTGGAGGNGGFGALNLAGDGGAG 245 GG G +GG G+ G A GF AL+ G GG Sbjct: 64 N----GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.005 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 297 GGNGGTGGIGLDGVAGHIGGGNAGNAGNGGTGGSGGLLLGN----GGDGGHGGTGGGGGR 352 GG+G G +G+I GG G GG G N GG G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 353 GINGADGGHGGDGGTGGAAGSA 374 G G +G GG GTGG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.4 bits (73), Expect = 0.006 Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 275 QGASGGDGGAGGGTGLWGTGGVGGNGGTGGIGLDGVAGHIGGGNAGNAGNGGTGGSGGLL 334 +G + G G TG G G + G G GGG+ GG G G Sbjct: 7 RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN-G 65 Query: 335 LGNGGDGGHGGTGGGG 350 GNG GG GTGG Sbjct: 66 GGNGNSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.007 Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 7/125 (5%) Query: 348 GGGGRGINGADGGHGGDGGTGGAAGSAGLLFGDGGTGGHGGAGFGGGNGSDSPQGGQGGN 407 GG GRG N G+ G G DG +GGG+GS GG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 408 AGVAGNGGAGGSAAMLFGNGGAGGNGGSGGDGGHGGNSTVSVPGGIGGDAGAGGTGGSAG 467 GNG +GG + G GGN + G +S PG G SA Sbjct: 63 GNGGGNGNSGGGS-------GTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Query: 468 KSGLL 472 + ++ Sbjct: 116 IADIM 120 Score = 31.6 bits (71), Expect = 0.010 Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Query: 192 GQGGAGGNGGTATLAGGAGGAGGVGGSAGLWGTGGAGGNGGFGALNLAGDGGAGAGGGDG 251 G G G N G + +G G G GL GGA G+ + N GG+G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNING-----GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 252 GRGGWLYGNGGVGGTGGTGGIG 273 G G G G GG+G G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGG 79 Score = 31.6 bits (71), Expect = 0.011 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 3/105 (2%) Query: 453 IGGDAGAGGTGGSAGKSGLLFGAGGAGGQGGGGGTGGDGGNNIIGANVGGDGGAGGAGGL 512 + G G G G+ SG + G G GGG G + N G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSE---NNPWGGGSGSGIHWG 57 Query: 513 GGNGTDGGWLSGNGGDGGAGGQGGDGGHGGSPGGFDGKSGVGGDG 557 GG+G G +GN G G G GF S G G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102
>cloacin#Cloacin signature. Length = 551 Score = 36.6 bits (84), Expect = 3e-04 Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 154 GVAGGAGGSAGLIGNGGAGGGGGAGAVGGNGGAGGWLFGNGGAGGAGGATPGIGGGGGAG 213 G GA ++G I G G G G GA G+G W N GG G+ GGG G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSG----WSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 214 GAGGIGGAAGLFGNGGAG 231 GG G + G G GG Sbjct: 64 NGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.001 Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 4/83 (4%) Query: 304 GTGGTGLNGNAPFADGQHPVILDGGHGGTGGNGGAAGNGGLLFGNGGNGGLGGMGGGGGN 363 G G G N A G ++GG G G GGA+ G N GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGN----INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 364 GLPSTGVGGDGGDGGNGGTAGNG 386 G GG+G GG GT GN Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.001 Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 127 DGAPGQAGGDGGLLYGNGGNGGTSTTAGVAGGAGGSAGLIGNGGAGGGGGAGAVGGNGGA 186 +G P G GG + G+G +S GG+G G G G GGG G GG G Sbjct: 21 NGGPTGLGVGGG---ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77 Query: 187 GGWLFGNGGA---GGAGGATPGIGGGGGAGGAGGIGGA 221 GG L G +TPG GG + AG + A Sbjct: 78 GGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 34.3 bits (78), Expect = 0.001 Identities = 36/115 (31%), Positives = 45/115 (39%), Gaps = 7/115 (6%) Query: 328 GHGGTGGNGGAAGNGGLLFGNGGNGGLGGMGGGG-GNGLPSTGVGGDGGDGGNGGTAGNG 386 G G G N GA G + NGG GLG GG G+G S GG G G Sbjct: 3 GGDGRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 387 GWLIGNGGTGGQGGAGFAGGTGADNVSAGRPGGAGGTGGIGAGGGNAGLIGTGGS 441 G +G GG G +G GTG + + P G G G + + G+ Sbjct: 61 G----HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 34.3 bits (78), Expect = 0.001 Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 271 GDGGRGLPGGDGGSGGAGGGTGLWGSGGAGGQGGTGGTGLNGNAPFADGQHPVILDGGHG 330 G GRG G + G G G G G+G + + N P+ G I GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWS--SENNPWGGGSGSGIHWGGGS 60 Query: 331 GTGGNGGAAGNGGLLFGNGGNGGLGGMGGGGGNGLPSTGVGGDGG 375 G G GG +GG G+G G L + G P+ G GG Sbjct: 61 GHGNGGGNGNSGG---GSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.3 bits (78), Expect = 0.001 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 1/114 (0%) Query: 484 GSGSRGGDGGDGGNGGEGRGGFSVPQHGVGGQGGTGGNGSDGGWLYGDGGAGGAGGNGGF 543 G RG + G G GG + G G G+G + + W G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 544 GGSGVQNGAGGDAGSGGDSRLIGDGGAAGAGGTGAP-PGADGHSGADGLLSAAL 596 G G +GG +G+GG+ + A G P G S + G LSAA+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Score = 33.9 bits (77), Expect = 0.002 Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 8/87 (9%) Query: 371 GGDGGDGGNGGTAGNGGWLIGNGGTGGQGGAGFAGGTGADNVSAGRPGGAGGTGGIGAGG 430 GGDG G + +G G G G GGA G ++N P G G GI GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN----NPWGGGSGSGIHWGG 58 Query: 431 GNAGLIGTGGSGGNGGMGGHGGDSGYG 457 G+ G G GGNG GG G G Sbjct: 59 GS----GHGNGGGNGNSGGGSGTGGNL 81 Score = 33.5 bits (76), Expect = 0.002 Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 452 GDSGYGDQTGGQGGNGGM-GGAGGAAGNGGLLLGSGSRGGDGGDGGNGGEGRGGFSVPQH 510 G G G TG +G + GG G GG GSG + GG G G H Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 511 GVGGQGGTGGNGSDGG 526 G GG G G GS G Sbjct: 63 GNGGGNGNSGGGSGTG 78 Score = 33.5 bits (76), Expect = 0.003 Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Query: 134 GGDGGLLYGNGGNGGTSTTAGVAGGAGGSAGLIGNGGAGGGGGAGAVGGNGGAGGWLFGN 193 G + G +G G T GV GGA +G GGG + GG+G GN Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH---GN 64 Query: 194 GGAGGAGGATPGIGGGGGAGGAGGIGGAAGLFGNGGAG 231 GG G G G GG A A G L G G Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.2 bits (70), Expect = 0.013 Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 419 GAGGTGGIGAGGGNAGLIGTGGSGGNGGMGGHGGDSGYGDQTGGQGGNGGMGGAGGAAGN 478 G G G + GN TG G G G G S GG G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 479 GGLLLGSGSRGGDGGDGGNG 498 G G+G+ GG G GGN Sbjct: 66 G----GNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.018 Identities = 28/81 (34%), Positives = 33/81 (40%) Query: 234 GGDGGLNYYGDGGVAGAGGDGGRGGWLHGDGGDGGAGGDGGRGLPGGDGGSGGAGGGTGL 293 GGDG + G +G G G + G DG GG G GGG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 294 WGSGGAGGQGGTGGTGLNGNA 314 GG G GG GTG N +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 29.7 bits (66), Expect = 0.044 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 415 GRPGGAGGTGGIGAGGGNAGLIGTGGSGGNGGMGGHGGDSGYGDQTGGQGGNGGMGGAGG 474 G GA T G GG +G G S G+G + G GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 475 AAGNGGLLLGSGSRGG 490 +GG GSG+ G Sbjct: 68 NGNSGG---GSGTGGN 80
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 62.9 bits (153), Expect = 4e-13 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 18/125 (14%) Query: 1 MRILVTGATGYVGSRLVTALLADGHEVLA---------ATRNMARLSRLAWFDDVTPVIL 51 M+ LVTGA G++G + LL GH+V+ + ARL LA + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKI 59 Query: 52 DATDRASAQAAMNAAGQIDVVYYLVH------GIGQPD-FRDRDKTAAANLAVAARDTGV 104 D DR + A+G + V+ H + P + D + T N+ R + Sbjct: 60 DLADRE-GMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 105 RRIVY 109 + ++Y Sbjct: 119 QHLLY 123
>SECA#SecA protein signature. Length = 901 Score = 28.7 bits (64), Expect = 0.039 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 15/86 (17%) Query: 243 VAGRVLLVGDAAGYEDALTGEGISLAVKQAAA-------AVRAIADND-PASYEAAWHRV 294 + G VL A + TGEG +L A V + ND A +A Sbjct: 89 LGGMVLNERCIA---EMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEN--N 143 Query: 295 TRSYRWL--TRGLVLASAPRPARRAI 318 + +L T G+ L P PA+R Sbjct: 144 RPLFEFLGLTVGINLPGMPAPAKREA 169
>cloacin#Cloacin signature. Length = 551 Score = 40.1 bits (93), Expect = 1e-04 Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 1212 IGGAGGQGGSGGAAGTGGDVGGSPGEVGGAGGGGGFGGAGGAGGVGGGAGGSG-GVGGSG 1270 + G G+G + GA T G++ G P +G GG G GG GSG GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1271 GNGGLGVATGGAGGVGGQGGAAGAGGAAGAGATAAGAGGVGGLG 1314 G+G G GG G G + G A G GGL Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 39.3 bits (91), Expect = 2e-04 Identities = 29/88 (32%), Positives = 35/88 (39%) Query: 1057 TGGAGGGAGSGAGGLGAGGDGGTGGAGGAGGVGSSAGWGSGLAGQVGGAGGVGGAGGDSG 1116 +GG G G +GA +GG G G GG +GW S GG+G GG SG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1117 GLGGTNGDGGAGGLGGRGGAGGSSTTVA 1144 G GG G G + VA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 38.2 bits (88), Expect = 3e-04 Identities = 37/112 (33%), Positives = 45/112 (40%), Gaps = 2/112 (1%) Query: 1193 GRGGDGGAGGIGGG--GGLSGIGGAGGQGGSGGAAGTGGDVGGSPGEVGGAGGGGGFGGA 1250 GRG + GA G GG +G+G GG G + GG G GGG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1251 GGAGGVGGGAGGSGGVGGSGGNGGLGVATGGAGGVGGQGGAAGAGGAAGAGA 1302 GG G GGG+G G + G G GG + AG + A A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 37.4 bits (86), Expect = 7e-04 Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 509 AGGDGGAGGVGAEGAAGAGVVGGGAGGDGGAGGAAGAGGSGGGGIGGGKAGTG-GDGGIG 567 +GGDG GA +G + GG G G G + G+G S GG +G+G GG Sbjct: 2 SGGDGRGHNTGAHSTSG-NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 568 GAGGTGGGGGNGDTYSTGGAGGDGGAGGAAGSAGGAGAGSGGAAGSAGSG 617 G G GG G +G TGG A A G + G+GG A S +G Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 37.0 bits (85), Expect = 8e-04 Identities = 31/101 (30%), Positives = 44/101 (43%) Query: 545 AGGSGGGGIGGGKAGTGGDGGIGGAGGTGGGGGNGDTYSTGGAGGDGGAGGAAGSAGGAG 604 +GG G G G + +G G G GGG +G +S+ GG+G GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 605 AGSGGAAGSAGSGGSGGDGGAGGASGRELGSNLGYAGGVGG 645 G+GG G++G G G + A+ G G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 35.5 bits (81), Expect = 0.002 Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 6/118 (5%) Query: 1616 NGGRGGAGGAGGFAGDGEGSGGTAGSGGNGGKGGNAGAGGNGVPAAGAAAGNGGLGGSGG 1675 +GG G G + G +GG G G GG +G P G + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1676 AGGSGAIGAAAGGAGGAGGNGGTGGNAGIGVMRGASTPALAGDGGVGGAGGLGGVARS 1733 G G G GG+G G + + PAL+ G G A + A S Sbjct: 62 HGNGG------GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 34.7 bits (79), Expect = 0.004 Identities = 36/103 (34%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Query: 970 GSGGGVGNAGVGGAGGVGGAGGAGGAADGPGLFGYDG--GAGGAGGIGGAAGVGGSNGAG 1027 G G + GG G G GGA+DG G + G G GI G G NG G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 1028 GTGGAGGVGGVGADSGLASRPGGAGGAGGTGGAGGGAGSGAGG 1070 GG G G S +A+ A T GAGG A S + G Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 34.7 bits (79), Expect = 0.005 Identities = 27/80 (33%), Positives = 37/80 (46%) Query: 485 AGGAGGAGGAGGAAAAGGTAGVGGAGGDGGAGGVGAEGAAGAGVVGGGAGGDGGAGGAAG 544 +GG G G + +G G G GG G+ ++ GGG+G GG +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 545 AGGSGGGGIGGGKAGTGGDG 564 G GG G GG +GTGG+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 34.3 bits (78), Expect = 0.005 Identities = 25/77 (32%), Positives = 27/77 (35%) Query: 1104 GAGGVGGAGGDSGGLGGTNGDGGAGGLGGRGGAGGSSTTVAGAGGGGGRGGDGGSAGGGV 1163 G G GA SG + G G GG G S G G G G GGS G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1164 GGGGVGGAAGSGGAGGA 1180 GG G G G + Sbjct: 66 GGNGNSGGGSGTGGNLS 82 Score = 34.3 bits (78), Expect = 0.006 Identities = 35/108 (32%), Positives = 41/108 (37%), Gaps = 1/108 (0%) Query: 1451 GAGGAGGQGGAANGGVAGDGGVGGNGGVGGVGGRGGDGANGAPGGGIDGTG-RPGGAGGQ 1509 G G G GA + +GG G G GG G + P GG G+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1510 GGSGGRAGFGGAAGAGEGGEYGAAGVGGNGGDGGAGGRGGYGTTGSGG 1557 G GG GG +G G AA V G GG + S G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.9 bits (77), Expect = 0.006 Identities = 27/85 (31%), Positives = 35/85 (41%) Query: 440 AAGQGRGGTVGAAGVGGTGGVGGDGGAGDSGAAASAPGGAGGTGWAGGAGGAGGAGGAAA 499 + G GRG GA G G G GA+ + + W GG+G GG + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 500 AGGTAGVGGAGGDGGAGGVGAEGAA 524 G G G +GG G GG + AA Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.009 Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 2/104 (1%) Query: 660 LAGAAGSGGNGGAGGAGGASAVALVGGAGGAGGAGGQGGTAGDGPGGVGGHGGSGGSGGI 719 ++G G G N GA G G G G + G G ++ + P G GG G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGG 59 Query: 720 GGTGGDGYQSGDVGGQGGEGGAGGAAGAGGEAGAQGLAGAGGTG 763 G G G +G+ GG G GG A A G L+ G G Sbjct: 60 SGHGNGG-GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.1 bits (75), Expect = 0.011 Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 1496 GIDGTGRPGGAGGQGGS--GGRAGFGGAAGAGEGGEYGAAGVGGNGGDGGAGGRGGYGTT 1553 G DG G GA G+ GG G G GA +G + + GG G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1554 GSGGLFGGSGGHGGVGGIGGNGGSAAAGG 1582 G+GG G SGG G GG + A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.8 bits (74), Expect = 0.017 Identities = 40/115 (34%), Positives = 45/115 (39%), Gaps = 10/115 (8%) Query: 346 GGAGGAGGVGGAGTSGGDAVVPGGVGGVGGSGGAGG--------AGGSGGGAGWLGTAGD 397 GG G G TSG P G+G GG+ G GGSG G W G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 398 GGVGGVGGGGGGGGVGASGVGHQLAGGAGGAGGAGGAAGAGGAAGQGRGGTVGAA 452 G G G G GGG G G +A A GAGG A G + AA Sbjct: 63 GNGG--GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 32.4 bits (73), Expect = 0.019 Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 5/103 (4%) Query: 600 AGGAGAGSGGAAGSAGSGGSGGDGGAGGASGRELGSNLGYAGGVGGDGGQGGQGGAAVGG 659 +GG G G A S +GG G G G GS G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 660 LAGAAGSGGNGGAGGAGG-----ASAVALVGGAGGAGGAGGQG 697 G+G +GG G GG A+ VA A GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.4 bits (73), Expect = 0.019 Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Query: 1148 GGGGRGGDGG--SAGGGVGGGGVGGAAGSGGAGGAGGRGIDSYAAAGGRGG--DGGAGGI 1203 GG GRG + G S G + GG G G G + G+G ++ G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1204 GGGGGLSGIGGAGGQGGSGGAAGTGGDVGGSPGEVGGAGG 1243 G GGG GG G GG+ A G GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.020 Identities = 28/81 (34%), Positives = 32/81 (39%) Query: 1145 GAGGGGGRGGDGGSAGGGVGGGGVGGAAGSGGAGGAGGRGIDSYAAAGGRGGDGGAGGIG 1204 G G G G+ GG G GVGG A G + + +G G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1205 GGGGLSGIGGAGGQGGSGGAA 1225 GG G SG G G S AA Sbjct: 66 GGNGNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.021 Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 1869 GAGGVGGFGGVGGTGASGLGGSGGIGGDGGA--GGVGGDCSVPLSPGNGGDGGAGGDGGD 1926 G G G G T + GG G+G GGA G + P G+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1927 GGDGGNGQPGGPGGAGGGAASGGA 1950 G GGNG GG G GG ++ A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.021 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 2/101 (1%) Query: 1567 GVGGIGGNGGSAAAGGVNGNGGNGGIGGNAGDAGNGANGSLLHHAGDGGNGGRG-GAGGA 1625 G G G N G+ + G N NGG G+G G + S + G G G G G Sbjct: 3 GGDGRGHNTGAHSTSG-NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1626 GGFAGDGEGSGGTAGSGGNGGKGGNAGAGGNGVPAAGAAAG 1666 G G SGG +G+GGN A G + A G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.022 Identities = 35/107 (32%), Positives = 43/107 (40%), Gaps = 3/107 (2%) Query: 1249 GAGGAGGVGGGAGGSGGVGGSGGNGGLGVATGGAGGVGGQGGAAGAGGAAGAGATAAGAG 1308 G G G G SG + +GG GLGV G + G G GG +G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1309 GVGGLGGDGGNGGNGVRGAAGVAGGDGAVGGGGGAGGAGGQGGAGVT 1355 G G GG GN G G ++ V G A G GG V+ Sbjct: 61 GHGN-GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 32.4 bits (73), Expect = 0.022 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 1771 GAGGVGGNGGFAALGTGGAAGSGGGGGTGGAGGVSDSPTTSRSVGGAGGVGGVGGNGGIG 1830 G G G N G + G G G GGA S + + GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1831 GNGQIGGDGGSGGAAGAGGAGA 1852 GNG GG+G SGG +G GG + Sbjct: 63 GNG--GGNGNSGGGSGTGGNLS 82 Score = 32.0 bits (72), Expect = 0.025 Identities = 39/135 (28%), Positives = 46/135 (34%) Query: 756 LAGAGGTGGTGGQGGTGGIGAQGSNGHGVGGRPGTAGAVGGAGGAGGQGGAAGLDGTAGD 815 ++G G G G T G G G GVGG G G +G+ G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 816 GGVGGTGGRGGAGGDGAGGVGHQLAGGAGGDGGAGGAAGVGGAAGAGSGGVVGAAGTGGT 875 G G G GG G GG +A A G GG A + S G + AA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIM 120 Query: 876 GGAGGNGGAGDTGVA 890 G G GVA Sbjct: 121 AALKGPFKFGLWGVA 135 Score = 32.0 bits (72), Expect = 0.029 Identities = 22/81 (27%), Positives = 30/81 (37%) Query: 539 AGGAAGAGGSGGGGIGGGKAGTGGDGGIGGAGGTGGGGGNGDTYSTGGAGGDGGAGGAAG 598 +GG +G G G G+GG G G + + GG+G GG +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 599 SAGGAGAGSGGAAGSAGSGGS 619 G G G+ G G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 32.0 bits (72), Expect = 0.032 Identities = 32/114 (28%), Positives = 38/114 (33%), Gaps = 6/114 (5%) Query: 1425 GGNGGAGDAGVAGADGGGAGGSGWAGGAGGAGGQGGAANGGVAGDGGVGGNGGVGGVGGR 1484 GG+G + G G GG G GGA G ++ GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1485 GGDGANGAPGGGIDGTGRPGGAGGQGGSGGRAGFGGAAGAGEGGEYGAAGVGGN 1538 G G NG GGG G G FG A + G A + Sbjct: 63 GNGGGNGNSGGG------SGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.6 bits (71), Expect = 0.034 Identities = 31/80 (38%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 224 SGGAGGAGDVGVAGGAGGV-GGRGGWVFGDGGSGGVGGSGGVGVVGGVGGVGGGTGVFGG 282 SGG G + G +G + GG G G G S G G S GG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 283 GGAGGAGGVGGGTGGSGGNG 302 G GG G GG G+GGN Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 31.6 bits (71), Expect = 0.034 Identities = 32/108 (29%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 929 GDGGTGGAGGAGAGGDRTDGGRGGVGGAGGDAGAGGVTGAGGSGGGVGNAGVGGAGGVGG 988 G G G GA + +GG G+G GG + G + GG +G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 989 AGGAGGAADGPGLFGYDGGAGGAGGIGGAAGVGGSNGAGGTGGAGGVG 1036 G G G G G AA V A T GAGG+ Sbjct: 63 GNGGGNGNSG------GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.039 Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 5/122 (4%) Query: 1596 AGDAGNGANGSLLHHAGDGGNGGRGGAGGAGGFAGDGEGSGGTAGSGGNGGKGGNAGAGG 1655 +G G G N +G+ G G G G G G S GG+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1656 NGVPAAGAAAGNGGLGGSGGAGGSGAIGAAAGGAGGAGGNGGTGGNAGIGVMRGASTPAL 1715 +G GNG GG G GG+ + AA G + G + + GA + A+ Sbjct: 62 HG-----NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Query: 1716 AG 1717 A Sbjct: 117 AD 118 Score = 31.2 bits (70), Expect = 0.047 Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 1/112 (0%) Query: 571 GTGGGGGNGDTYSTGGAGGDGGAGGAAGSAGGAGAGSGGAAGSAGSGGSGGDGGAGGASG 630 G G G N +ST G +GG G G + + + GGSG GG SG Sbjct: 3 GGDGRGHNTGAHSTSG-NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 631 RELGSNLGYAGGVGGDGGQGGQGGAAVGGLAGAAGSGGNGGAGGAGGASAVA 682 G G +GG G GG A V A + G GG + A A++ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113
>cloacin#Cloacin signature. Length = 551 Score = 33.9 bits (77), Expect = 0.002 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 458 MGFGNGGGGNTGFY------NSGTYNTGFSNAGETNTGWENSGNVNTGGYNSGGLNTGIG 511 M G+G G NTG + N G G +GW + N GG SG G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 512 SPDTQAGPNSGFGHSGSGNSG 532 G + G SG+G + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.019 Identities = 23/89 (25%), Positives = 30/89 (33%), Gaps = 11/89 (12%) Query: 225 GSGNTGSANLGGGNIGNGNLGSGNTGNVNLGNGNNGFFNFGNGNLGDTNFGSGNSGNLNL 284 G G+ A+ GNI G G G G + G+G N G + Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-----------WSSENNPWGGGSGSGI 54 Query: 285 GSGNRFGSGNIGFGNRFGDGNFGSGNAGS 313 G G GN G G G+ GN + Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 30.1 bits (67), Expect = 0.032 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Query: 378 MGFGNAGDNNVGFFNSGSNNIGFFNSGDGNFGFANAGSTNTGFWNSGGTNTGFGNGGSLN 437 M G+ +N G ++ N N G G S +G W+S G G+G ++ Sbjct: 1 MSGGDGRGHNTGAHSTSGN----INGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIH 55 Query: 438 FGFGNGGVENMGHGNAGSFNMGFGNGGGGN 467 +G G G N G N G G+G GGN Sbjct: 56 WG-GGSGHGNGGGNG----NSGGGSGTGGN 80
>cloacin#Cloacin signature. Length = 551 Score = 35.8 bits (82), Expect = 0.001 Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 757 GSGNHGDANLGFGNFGNGNIGSGNHGAGNFGSGNTGSRNLGSGNAGSTNFGSGNHGNSNV 816 G G++ A+ GN G G G G + GSG + N G +GS G G+ N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 817 GLGNFGNNNLGLGNNGSNN---IGFGLTGDNLVGIGAL 851 G G G N S + FG + G G L Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 34.3 bits (78), Expect = 0.003 Identities = 24/77 (31%), Positives = 30/77 (38%) Query: 717 GFGNIGQANLGSGNAGNTNLGSGNTGSTNFGSGNIGALNLGSGNHGDANLGFGNFGNGNI 776 G G+ A+ SGN G G G + GSG N G G G G+GN Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 777 GSGNHGAGNFGSGNTGS 793 G + G G+G S Sbjct: 66 GGNGNSGGGSGTGGNLS 82 Score = 34.3 bits (78), Expect = 0.003 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Query: 737 GSGNTGSTNFGSGNIGALNLGSGNHGDANLGFGNFGNGNIGSGNHGAGNFGSGNTGSRNL 796 G G+ + SGNI G G G A+ G G N G G+G G +G N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 797 GSGNAGSTNFGSGNHGNSNVGLGNFGNNNLGLGNNGSNNIGFGLTGDNL 845 G G+G + ++ FG L G+ + ++ L Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFP--ALSTPGAGGLAVSISAGAL 112 Score = 33.5 bits (76), Expect = 0.005 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 3/109 (2%) Query: 942 NSGSYNT-GSFNSGTLNTGDFNGGDHNTGWGNSGNTNTGGINSGDLNTGFGSSADQAVTN 1000 N+G+++T G+ N G G G +GW + N GG SG G S Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI--HWGGGSGHGNGGG 67 Query: 1001 SGFGNNGSGNSGFNNTGDTNSGFHNANTSALFSGHSGLLNAGGSQSVGI 1049 +G GSG G + F S +G + + G+ S I Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Score = 32.4 bits (73), Expect = 0.013 Identities = 23/78 (29%), Positives = 29/78 (37%) Query: 727 GSGNAGNTNLGSGNTGSTNFGSGNIGALNLGSGNHGDANLGFGNFGNGNIGSGNHGAGNF 786 G G+ + SGN G G G + GSG + N G G+G G G GN Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 787 GSGNTGSRNLGSGNAGST 804 G G+G S Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 30.5 bits (68), Expect = 0.040 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Query: 707 GSGNTGDANFGFGNIGQANLGSGNAGNTNLGSGNTGSTNFGSGNIGALNLGSGNHGDANL 766 G G+ A+ GNI G G G + GSG + N G G+ G G N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 767 GFGNFGNGNIGSGNHGAGNFGS 788 G GNGN G G+ GN + Sbjct: 66 G----GNGNSGGGSGTGGNLSA 83
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 2e-04 Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Query: 560 TGGTGGAGGSGGTDSISGIAGGDGGAGGAGGWLSGTGGAG-----GSGGAGGDGGVLGSG 614 +GG G +G + I GG G G GG G+G + G G G GSG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 615 DGGAGGAGGSGGAGGLLGAGGTGGTGAIGGFSGLLASGDGGAGGAGGAGGAGGLLGGLVG 674 G GG G SGG G G GF L G GG + AG + ++ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Query: 675 A 675 A Sbjct: 122 A 122 Score = 37.0 bits (85), Expect = 3e-04 Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 10/122 (8%) Query: 399 GSGGNGGAGGAGGVFFGNGGAGGAGGTGGDG----------GGIGGAGGAAGNGVLIGNG 448 G G N GA G G G GG DG GG G+G G G GNG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 449 GNGGIGGIGLTPGADGIGGTSGLVLGLDGFNAPASTSPLHTLQQQALNAINAPVEAATGR 508 G G G G G + + + G + P + ++ AL+A A + AA Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKG 125 Query: 509 PL 510 P Sbjct: 126 PF 127 Score = 35.8 bits (82), Expect = 8e-04 Identities = 37/104 (35%), Positives = 43/104 (41%), Gaps = 10/104 (9%) Query: 264 GGGHGGTGGYGGGAGGAGGNAGLLAGTGGSGGTGGYGGGAGGAGGNAGLLFGNGGAGGAG 323 G H +G GG G G G G+G S +GGG+G G G G G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW----GGGSGHGNGG 66 Query: 324 ATGGGNTGGIGGDGGNAGMLFSNGGAGGAGGASELADGGAGGAG 367 G GN+GG G GGN S A A G L+ GAGG Sbjct: 67 --GNGNSGGGSGTGGN----LSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.1 bits (80), Expect = 0.001 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 352 AGGASELADGGAGGAGGNGGWLLSNGGVGGAGGAGADAVGPPFGIPAGSGGNGGAGGAGG 411 +GG + GA GN NGG G G G + G G + + GG G+G Sbjct: 2 SGGDGRGHNTGAHSTSGN-----INGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGI 54 Query: 412 VFFGNGGAGGAGGTGGDGGGIGGAGG 437 + G G G GG G GGG G G Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 34.7 bits (79), Expect = 0.002 Identities = 38/107 (35%), Positives = 41/107 (38%), Gaps = 15/107 (14%) Query: 293 SGGTG-GYGGGAGGAGGNAGLLFGNGGAGGAGATGGGNTGGIGGDGGNAGMLFSNGGAGG 351 SGG G G+ GA GN NGG G G GG + G S G Sbjct: 2 SGGDGRGHNTGAHSTSGNI-----NGGPTGLGVGGGASDGSGWS---------SENNPWG 47 Query: 352 AGGASELADGGAGGAGGNGGWLLSNGGVGGAGGAGADAVGPPFGIPA 398 G S + GG G G GG S GG G G A A FG PA Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPA 94 Score = 34.3 bits (78), Expect = 0.003 Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Query: 272 GYGGGAGGAGGNAGLLAGTGGSGGTGGYGGGAGGAGGNAGLLFGNGGAGGAGATGGGNTG 331 G+ GA GN GG G G GG + G+G ++ GG+G GGG+ Sbjct: 8 GHNTGAHSTSGNI-----NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 332 GIGGDGGNAGMLFSNGGAGGAGGASELADGGAGGAGGNGGWLLSNGG 378 G GG GN+G GG A A A G GG +S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 33.1 bits (75), Expect = 0.005 Identities = 29/97 (29%), Positives = 34/97 (35%) Query: 230 GAGGLGGAGGFGGSAGGAGGQGGAGGLLSGLVGAGGGHGGTGGYGGGAGGAGGNAGLLAG 289 G G GA G+ G G GG S G + GG G GG +G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 290 TGGSGGTGGYGGGAGGAGGNAGLLFGNGGAGGAGATG 326 G GG G G + A + FG GA G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.0 bits (72), Expect = 0.011 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 215 GKGGAGGAGGSGGLFGAGGLGGAGGFGGSAGGAGGQ------GGAGGLLSGLVGAGGGHG 268 G+G GA + G G G G G S G GG+G + G+G G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 269 GTGGYGGGAGGAGGNAGLLAGTGGSGGTGGYGGGAGGAG 307 G G GG G GGN +A G GAGG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.011 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 123 NGAPGTGANGGAGGWLIGNGGAGGSGAPGLNGGAGGAAGLIGTGGAGGAGGSSSTVNGGV 182 +G G G N GA GG G+ GGA +G G G S GG Sbjct: 2 SGGDGRGHNTGAHS--TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 183 GGTGGAGGWLLGNGGAGGAGGASAI 207 G G GG GG+G G SA+ Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.0 bits (72), Expect = 0.012 Identities = 27/81 (33%), Positives = 32/81 (39%) Query: 533 GDGGAGGSSTAGSGLDGGTGGAAGLWGTGGTGGAGGSGGTDSISGIAGGDGGAGGAGGWL 592 G G G ++ A S GG GL GG G ++ G G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 593 SGTGGAGGSGGAGGDGGVLGS 613 GG G SGG G GG L + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 31.6 bits (71), Expect = 0.017 Identities = 23/78 (29%), Positives = 29/78 (37%) Query: 701 GTGGAGGDAGLLGGPGGAGGTGGTGGPNIDAGGVLGAPGNSGAGGAGGNAGTLFGSGGVG 760 G G G + G G G G A G + G G +G +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 761 GDGGSGHGNGGDGGGGGN 778 G+GG +GG G GGN Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 31.2 bits (70), Expect = 0.022 Identities = 35/113 (30%), Positives = 38/113 (33%), Gaps = 11/113 (9%) Query: 597 GAGGSGGAGGDGGVLGSGDGGAGGAGGSGGAGGLLGAGGTGGTGAIGGFSGLLASGDGGA 656 G G G G G+ +GG G G GGA G G SG+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 657 GGAGGAGGAGGLLGGLVGAGGGDGGAGGTGGFHGDAVTGTAGAGGTGGAGGDA 709 G GG G GG G GG V A T GAGG A Sbjct: 63 GNGGGNGN-----------SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.8 bits (69), Expect = 0.025 Identities = 39/120 (32%), Positives = 50/120 (41%), Gaps = 16/120 (13%) Query: 717 GAGGTGGTGGPNIDAGGVLGAPGNSGAGGAGGNAGTLFGSGGVGGDGGSGHGNGGDGGGG 776 G G G G + +G + G P G GG G + G+ + S GGSG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 777 GNAGLLFSDAGGGGFGGFGLAGGGGTGGSGGDAGWLGSGG-----AGGAGGISVNGDAGA 831 G G G GG GTGG+ + G GAGG++V+ AGA Sbjct: 62 H----------GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 30.8 bits (69), Expect = 0.028 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 649 LASGDGGAGGAGGAGGAGGLLGGLVGAGGGDGGAGGTG-GFHGDAVTGTAGAGGTGGAGG 707 ++ GDG G +G + GG G G G G + G+G + G +G+G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 708 DAGLLGGPGGAGGTGGTGGPN 728 G GG G +GG GTGG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 30.1 bits (67), Expect = 0.048 Identities = 31/113 (27%), Positives = 38/113 (33%), Gaps = 12/113 (10%) Query: 760 GGDGGSGHGNGGDGGGGGNAGLLFSDAGGGGFGGFGLAGGGGTGGSGGDAGWLGSGGAGG 819 G SG+ NGG G G G G+ GGSG W G G G Sbjct: 12 GAHSTSGNINGGPTGLGVGGG-------ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 820 AGGISVNGDAGAGGAGGTSGQLLGDGGAGGAGGEAELAAGGAGGSGGVGGDAV 872 GG + +GG GT G L G A G G + + A+ Sbjct: 65 GGG-----NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGAL 112
>cloacin#Cloacin signature. Length = 551 Score = 38.2 bits (88), Expect = 2e-04 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 2/106 (1%) Query: 410 GGTGGLLLGNGGAGGAGGTSGNG--GGTGGAGGAAGSGVLIGNGGNGGIGGAGPTPGGNG 467 GG GL +G G + G+G +S N GG G+G G G GNGG G G G GGN Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 468 IGGTSGLLLGLDGFNAPTSTSPIHTLQQQALNAINAPIQAATGRPL 513 + + G + P + ++ AL+A A I AA P Sbjct: 82 SAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGPF 127 Score = 37.8 bits (87), Expect = 2e-04 Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 164 GSGGAGGAGGSSTSTNGGAGGAGGAGG------WLSGNAGVGGAGGASTVANGGAGGAGG 217 G G GA +S + NGG G G GG W S N GG G+ GG+G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 218 AGGLLGGGGLGGAGGASTSATA 239 G GGG G G S A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAP 87 Score = 37.8 bits (87), Expect = 2e-04 Identities = 36/110 (32%), Positives = 37/110 (33%), Gaps = 8/110 (7%) Query: 639 GAGGTGGPAGLGVFVGVPTFGDGGGGGAGGAGGAGGLLSGLVGAGGGDGGAGGQGGIGFG 698 G G G G G G G G GGA G S GGG G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 699 GSGGSGGGGGVGGNAGLLGGPGGAGGSGGAAGPALFGIGVDGTAGVGGAG 748 G+GG G G GG G G A P FG T G GG Sbjct: 63 GNGGGNGNSG--------GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.8 bits (87), Expect = 2e-04 Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 536 GDGGAGGSGGTGLDGG-DGGAAGLMGTGGTGGAGGWGGTDEITGGTGGAGGTGGGGGWLS 594 GDG +G G +GG GL GG GW + GG G+G GGG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 595 GSGGIGGGGGAGGYGG 610 GG G GG G GG Sbjct: 64 NGGGNGNSGGGSGTGG 79 Score = 36.6 bits (84), Expect = 4e-04 Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 258 GADGGHGGAGGHGAAGGDGGAGGDGGPLAGAGGSGGTGGSGNAGGGAGGAGGNAGLLFGD 317 G DG G H +G G G GA G N GG G+G + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 318 GGVGGTGGTSGQGVGGIGGDGGSAGLLFSNGGAGGAGGAGTALISGNGGA 367 G GG G SG G G G A + A GAG +S + GA Sbjct: 63 GNGGG-NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 36.6 bits (84), Expect = 4e-04 Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 698 GGSGGSGGGGGVGGNAGLLGGPGGAGGSGGAAGPALFGIGVDGTAGVGGAGGNAGLLFGS 757 GG G G + + GGP G G GGA+ G G G G +G+ +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASD----GSGWSSENNPWGGGSGSGIHWGG 58 Query: 758 GGAGGDGGFGPGAGGTGGRGGNAGLLFSSAGAGGFGGYGTTGGGTGGAGGDAGWLGCGGA 817 G G+GG +GG G GGN ++ A GF T G G AG L A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGN-LSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Query: 818 G 818 Sbjct: 118 D 118 Score = 36.2 bits (83), Expect = 7e-04 Identities = 32/111 (28%), Positives = 38/111 (34%) Query: 593 LSGSGGIGGGGGAGGYGGAIIPGNGGAGGSAGAGGAGGLFGGGGTGGAGGTGGPAGLGVF 652 +SG G G GA G I G G G GA G G G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 653 VGVPTFGDGGGGGAGGAGGAGGLLSGLVGAGGGDGGAGGQGGIGFGGSGGS 703 G+G GG G GG ++ V G G GG+ S G+ Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.8 bits (82), Expect = 7e-04 Identities = 36/118 (30%), Positives = 43/118 (36%), Gaps = 10/118 (8%) Query: 564 TGGAGGWGGTDEITGGTGGAGGTGGGGGWLSGSGGIGGGGGAGGYGGAIIPGNGGAGGSA 623 TG G + G G GG G GW S + GGG G+G GG + Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI----------HWGGGS 60 Query: 624 GAGGAGGLFGGGGTGGAGGTGGPAGLGVFVGVPTFGDGGGGGAGGAGGAGGLLSGLVG 681 G G GG GG G GG V G P G GG + AG L + + Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 34.3 bits (78), Expect = 0.002 Identities = 36/119 (30%), Positives = 42/119 (35%), Gaps = 16/119 (13%) Query: 615 GNGGAGGSAGAGGAGGLFGGGGTGGAGGTGGPAGLGVFVGVPTFGDGGGGGAGGAGGAGG 674 G G G + GA G GG TG G G G G +G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG--------- 53 Query: 675 LLSGLVGAGGGDGGAGGQGGIGFGGSGGSGGGGGVGGNAGLLGGPGGAGGSGGAAGPAL 733 + GGG G G G GG G+GG G P A + GA G A+ Sbjct: 54 -----IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFP--ALSTPGAGGLAV 105 Score = 33.9 bits (77), Expect = 0.003 Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Query: 223 GGGGLGGAGGA-STSATASGGAGGQGGAAGLLSGFVGADGGHGGAGGHGAAGGDGGAGGD 281 GG G G GA STS +GG G G G A G G + + GG G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG-------ASDGSGWSSENNPWGGGSGSGIH 55 Query: 282 GGPLAGAGGSGGTGGSGNAGGGAGGAGGNA 311 G +G G GG G SG G G A Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 33.5 bits (76), Expect = 0.004 Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 10/114 (8%) Query: 192 LSGNAGVGGAGGASTVANGGAGGAGGAGGLLGGGGLGGAGGASTSATASGGAGGQGGAAG 251 +SG G G GA + + GG G G GGG G+G +S + GG+G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGV--GGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 252 LLSGFVGADGGHGGAGGHGAAGGDGGAGGDGGPLAGAGGSGGTGGSGNAGGGAG 305 GHG GG+G +GG G GG+ +A G S GG Sbjct: 59 --------GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.006 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 303 GAGGAGGNAGLLFGDGGVGGTGGTSGQGVGGIGGDGGSAGLLFSNGGAGGAGGAGTALIS 362 G G G N G G + GG +G GVGG DG + G G G S Sbjct: 3 GGDGRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 363 GNGGAGGNGGNGGWLFSNGGVGGAGGAGAPAMPSLGISAGSGGVG 407 G+G GGNG +GG + G + A P+L + G+GG+ Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS-TPGAGGLA 104 Score = 32.4 bits (73), Expect = 0.009 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 827 GTGGTGGAGGTGGQLLGA-GGAGGAGGQTDPLGGSTGGSGGVGGNAVLIGTGGNGGNGGA 885 G G GA T G + G G G GG +D G S+ + GG+ I GG G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 886 GTAKGTPGTGGTGG 899 G + G GTGG Sbjct: 66 GGNGNSGGGSGTGG 79 Score = 31.2 bits (70), Expect = 0.024 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 772 GTGGRGGNAGLLFSSAGAGGFGGYGTTGGGTGGAGGDAGWLGCGGAGGAGGITIGGTGGT 831 G GRG N G + + +G G T G GGA +GW G G + GG Sbjct: 3 GGDGRGHNTG---AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 832 GGAGGTGGQLLGAGGAGGAGG 852 G G GG GG+G G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGN 80 Score = 30.8 bits (69), Expect = 0.024 Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 760 AGGDG-GFGPGAGGTGGR--GGNAGLLFSSAGAGGFGGYGTTGGGTGGAGGDAGWLGCGG 816 +GGDG G GA T G GG GL + G G GG+G W G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 817 AGGAGGITIGGTGGTGGAGGTGGQLLGAGGAGGAGGQTDPLGGSTGGS 864 G GG G G G G + A A G + P G S Sbjct: 62 HGNGGG---NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 30.8 bits (69), Expect = 0.029 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 4/93 (4%) Query: 272 AGGDGGAGGDGGPLAGAGGSGGTGGSGNAGGGAGGAG-GNAGLLFGDGGVGGTGGTSGQG 330 +GGDG G +GG G G GG + G+G + +G G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 331 VGGIGGDGGSAGLLFSNGGAGGAGGAGTALISG 363 G GG+G S G +G G + G Sbjct: 62 HGNGGGNGNSGG---GSGTGGNLSAVAAPVAFG 91 Score = 30.5 bits (68), Expect = 0.035 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 2/97 (2%) Query: 120 NGANGTPGTGADGAPGGWLLGDGGAGGSGAPGLNGGAGGAAGLLGSGGAGGAGGSSTSTN 179 N + +G P G +G G + GSG N GG +G G G G+ Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 180 GGAGGAGGAGGWLSGNAGVGGAGGASTVANGGAGGAG 216 GG+G G + A V A G ++ GAGG Sbjct: 70 NSGGGSGTGGNLSAVAAPV--AFGFPALSTPGAGGLA 104 Score = 30.5 bits (68), Expect = 0.035 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 516 NGTPGDAGSGTDGTPGGWLLGDGGAGGSGGTGLDGGDGGAAGLMGTGGTGGAGGWGGTDE 575 N +G P G G G S G+G + G G+G G G G Sbjct: 10 NTGAHSTSGNINGGPTG---LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 576 ITGGTGGAGGTGGGG 590 G +GG GTGG Sbjct: 67 GNGNSGGGSGTGGNL 81
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 46.4 bits (110), Expect = 5e-07 Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 23/231 (9%) Query: 127 TAAGAQSDDGKAVTVQLSLGGNRGESLANESVEAVRKIVAETPA--PPGIKTYVTGPSAL 184 A + ++L+ G N A ++ +A++ +AE P G+K + Sbjct: 277 VIARINGKPAAGLGIKLATGAN-----ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTP 331 Query: 185 MVDMQRSGDKSMLKITLTTVTVIFFMLLLVYRSVSTVIALLSMVGVALTASRGIVALIGH 244 V + ++K + ++F ++ L +++ + V V L + I+A G+ Sbjct: 332 FV---QLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY 388 Query: 245 SGGIGLTTFAVTLLTSLTIAAGTDYGIFVFGRYHEARLIGEDEETAFYTMYRGTTHV--- 301 S LT F + L I D I V R++ ED+ + + + Sbjct: 389 SINT-LTMFGMVL----AIGLLVDDAIVVVENVE--RVMMEDKLPPKEATEKSMSQIQGA 441 Query: 302 ILGTGLTIAAATLCLLF---ARLPSFQTLAIPCAVGTLVTVAVALTLTPAV 349 ++G + ++A + + F + ++ +I ++V VAL LTPA+ Sbjct: 442 LVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 36.4 bits (84), Expect = 7e-04 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 13/212 (6%) Query: 149 RGESLANESVEAVRKIV--AETPAPPGIKTYVTGPSALMVDMQRSGDKSMLKITLTTVTV 206 +GE+ S ++ + P GI TG S + SG+++ + ++ V Sbjct: 827 QGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMS---YQERLSGNQAPALVAIS-FVV 882 Query: 207 IFFMLLLVYRSVSTVIALLSMVGVALTASRGIVALIGHSGGIGLTTFAVTLLTSLTIAAG 266 +F L +Y S S I + M+ V L ++A + + F V LLT++ ++A Sbjct: 883 VFLCLAALYESWS--IPVSVMLVVPLGIVGVLLAATLFNQKNDV-YFMVGLLTTIGLSAK 939 Query: 267 TDYGIFVFGRYHEARLIGEDEETAFYTMYRGTTHVILGTGLTIAAATLCLLFARLP---S 323 I F + G+ A R IL T L L L + + Sbjct: 940 NAILIVEFAK-DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 324 FQTLAIPCAVGTLVTVAVALTLTPAVLVVGSR 355 + I G + +A+ P VV R Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.6 bits (230), Expect = 1e-23 Identities = 33/131 (25%), Positives = 62/131 (47%) Query: 27 SPIRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVD 86 + +L+ DD+ A+ ++ AL G+DV I N D++V D+++PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 87 GLQILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRR 146 +L R++ + P L ++A+++ M + GA DY+ KPF L EL+ + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 147 SSHLAPPADES 157 ++ Sbjct: 122 PKRRPSKLEDD 132
>cloacin#Cloacin signature. Length = 551 Score = 34.7 bits (79), Expect = 0.001 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%) Query: 214 GGNIGNFNFGSGNRGGNVNFGNGNNGFFNLGGGNIGSNNFGSGNRGNGNIGFGNYQSTGG 273 GG+ N G+ + GN+N G LG G S+ G + N G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTG-----LGVGGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 274 ANIGGGNSGSGNKGFGNTGNYNIGSGNFGS 303 G GN G GN+G + GN + Sbjct: 58 GGSGHGNGGGN----GNSGGGSGTGGNLSA 83 Score = 33.9 bits (77), Expect = 0.002 Identities = 26/86 (30%), Positives = 38/86 (44%) Query: 189 AGNLGFGNTGIANLGNGNTGNLNFGGGNIGNFNFGSGNRGGNVNFGNGNNGFFNLGGGNI 248 +G G G+ A+ +GN G G G + GSG N +G G+ + GGG+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 249 GSNNFGSGNRGNGNIGFGNYQSTGGA 274 N G+GN G G+ GN + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 31.6 bits (71), Expect = 0.012 Identities = 22/72 (30%), Positives = 25/72 (34%) Query: 272 GGANIGGGNSGSGNKGFGNTGNYNIGSGNFGSFNFGDGNRGSNNFGFGNTNSGNVGFGNL 331 GA+ GN G G G G + GSG N G GS G + GN G Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 332 GANNVGFGNLGS 343 G G S Sbjct: 71 SGGGSGTGGNLS 82 Score = 30.8 bits (69), Expect = 0.019 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 495 SGSDNTGFLNSGSVNTGFLNSGSTNTGAGNSGEVNTGFGIATD--SGATNSG---FGNTG 549 SG D G +G +N G T G G +G+ + G + SG G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 550 SGNSGFNNDGNDNSGFQNTGTSS 572 GN G N + SG ++ Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAV 84 Score = 30.1 bits (67), Expect = 0.036 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Query: 203 GNGNTGNLNFGGGNIGNFNFGSGNRGGNVNFGNGNNGFFNLGGGNIGSNNFGSGNRGNGN 262 G G+ + GNI G G GG + G+G + N GG GS G G+GN Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 263 IGFGNYQSTGGANIGGGNSGSGN 285 G G N GGG+ GN Sbjct: 65 GG-------GNGNSGGGSGTGGN 80 Score = 29.7 bits (66), Expect = 0.045 Identities = 25/86 (29%), Positives = 32/86 (37%) Query: 461 GLGNAGSFNMGFGNAGSGNVGYENAGGANVGFGNSGSDNTGFLNSGSVNTGFLNSGSTNT 520 G G+ + GN G G GGA+ G G S +N SGS SG N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 521 GAGNSGEVNTGFGIATDSGATNSGFG 546 G + +G G + A FG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 29.7 bits (66), Expect = 0.046 Identities = 24/80 (30%), Positives = 27/80 (33%) Query: 244 GGGNIGSNNFGSGNRGNGNIGFGNYQSTGGANIGGGNSGSGNKGFGNTGNYNIGSGNFGS 303 GG G N GN N G GGA+ G G S N G +G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 304 FNFGDGNRGSNNFGFGNTNS 323 N G G G S Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 29.7 bits (66), Expect = 0.047 Identities = 22/81 (27%), Positives = 30/81 (37%) Query: 283 SGNKGFGNTGNYNIGSGNFGSFNFGDGNRGSNNFGFGNTNSGNVGFGNLGANNVGFGNLG 342 SG G G+ + SGN G G G + G G ++ N G G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 343 SGNVGFGNTGNNNFGIGLSGN 363 GN G G G + + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 64.3 bits (156), Expect = 2e-14 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 9/190 (4%) Query: 6 ILITGASSGLGAGMARAFAARGRDLALCARRTDRLEELKSELAQ--KHPEITIAIAELDV 63 ITGA+ G+G +AR A++G +A ++LE++ S L +H E DV Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF----PADV 66 Query: 64 NDHDQVPKVFAELRDELGGIDRVIVNAGIGKGAPLGSGKLWANKATIETNLVAALVQIET 123 D + ++ A + E+G ID ++ AG+ + + S +AT N + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 124 ALEMFHKSGSGHLVLISSVLASKGVPGVK-AAYAASKAGLSSLGESLRAEYDKGPITVSV 182 + SG +V + S A GVP AAYA+SKA + L E + I ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 183 MEPGYIESEM 192 + PG E++M Sbjct: 185 VSPGSTETDM 194
>cloacin#Cloacin signature. Length = 551 Score = 45.9 bits (108), Expect = 2e-07 Identities = 35/101 (34%), Positives = 43/101 (42%), Gaps = 4/101 (3%) Query: 210 GLGGNGGTVGTGQSTNGGAGGDGGSGGSAGLFGGGGAGALGGDGGNGVGSDGSGGGAGSG 269 G G N G T + NGG G G GG++ G G G G G G G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 270 GDGGNGGFFYGDGGNGADAGSPGAGQSSFGSLGIAGEGDGG 310 G GN G G GGN + +P A FG ++ G GG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVA----FGFPALSTPGAGG 102 Score = 37.4 bits (86), Expect = 8e-05 Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Query: 188 GNGGNGGNAGLLQGVAG-NGAAGGLGGNGG-TVGTGQSTNGGAGGDGGSGGSAGLFGGGG 245 G G G N G NG GLG GG + G+G S+ G GGSG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG-GGSGSGIHWGGGSG 61 Query: 246 AGALGGDGGNGVGSDGSGGGAGS 268 G GG+G +G GS G + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAV 84 Score = 35.8 bits (82), Expect = 2e-04 Identities = 35/113 (30%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 228 AGGDG-GSGGSAGLFGGGGAGALGGDGGNGVGSDGSGGGAGSGGDGGNGGFFYGDGGNGA 286 +GGDG G A G G G G G SDGSG + + GG G GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 287 DAGSPGAGQSSFGSLGIAGEGDGGDGGNAFLIGNGGNGGAAAAFGFPGFGGNG 339 G G+G GG + GN A AFGFP G Sbjct: 62 HGN---------------GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 33.5 bits (76), Expect = 0.001 Identities = 36/129 (27%), Positives = 43/129 (33%), Gaps = 13/129 (10%) Query: 125 AAGTGQNGGDGGWLIGSGGRGGSGGVGQKGG-NGGSAGLWGNGGNGGLGGEGVQGGPGHP 183 + G G+ G GG G+G GG + GS N GG G G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 184 GQAGGNGGNGGNAGLLQGVAGNGAAGGLGGNGGTVGTGQSTNGGAGGDGGSGGSAGLFGG 243 GG GN G G GGN V + A G+GG A Sbjct: 62 HGNGGGNGNSGG------------GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Query: 244 GGAGALGGD 252 G A D Sbjct: 110 GALSAAIAD 118
>cloacin#Cloacin signature. Length = 551 Score = 39.3 bits (91), Expect = 4e-05 Identities = 37/92 (40%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Query: 356 GGDGAQGGNGGKAGFFYGNGGNGGFGGNGANGGDNSGTSSAVNGAGGMGGWGGAGGQAGL 415 GGDG G + NGG G G G D SG SS N GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGS- 60 Query: 416 IGNGGTGGAGGSGGAGGSGGTENGDAGPGGFG 447 G+G GG G SGG G+GG + A P FG Sbjct: 61 -GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 38.2 bits (88), Expect = 9e-05 Identities = 42/137 (30%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Query: 185 LTGGNGGIGGAGGFLYGLGGNGGIGGHGGDGGAAIGTGTDGGNGGNGGLAGAGGLLFGNG 244 ++GG+G G NGG G G GGA+ G+G N GG +G+G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 245 GVGGQGGDGGDATGGTATFSGGLAGSGGNGGNGGQSGWLYGNGGDGGNSGSGGTFESAGG 304 G G GG+G SGG GSG G + + G+GG S Sbjct: 61 GHGNGGGNGN---------SGG--GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Query: 305 SVLSGAQGGGFAASAGN 321 LS A AA G Sbjct: 110 GALSAAIADIMAALKGP 126 Score = 37.4 bits (86), Expect = 1e-04 Identities = 30/97 (30%), Positives = 36/97 (37%) Query: 154 GGNGGSAGLLGNGGAGGAGGAGASGAAGDSGLTGGNGGIGGAGGFLYGLGGNGGIGGHGG 213 G N G+ GN G G GA+ SG + N GG G GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 214 DGGAAIGTGTDGGNGGNGGLAGAGGLLFGNGGVGGQG 250 +G + G+GT G G G GG Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.4 bits (86), Expect = 2e-04 Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 397 VNGAGGMGGWGGAGGQAGLIGNGGTGGAGGSGGAGGSG-GTENGDAGPGGFGGHGGDALL 455 ++G G G GA +G I G TG G G + GSG +EN G GG G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG----GGSGSGIHW 56 Query: 456 FGNGGNGANGGNTGAPGTLSGGGTGT 481 G G+G GGN + G GG + Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 37.0 bits (85), Expect = 2e-04 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 226 GNGGNGGLAGAGGLLFGNGGVGGQGGDGGDATGGTATFSGGLAGSGGNGGNGGQSGWLYG 285 G G N G G + G G GG D +G ++ + GSG GG SG +G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG--HG 63 Query: 286 NGGDGGNSGSGGTFESAGGSVLSGAQGGGFAASAGNG 322 NGG GNSG GG+ S ++ GF A + G Sbjct: 64 NGGGNGNSG-GGSGTGGNLSAVAAPVAFGFPALSTPG 99 Score = 35.5 bits (81), Expect = 7e-04 Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 6/83 (7%) Query: 269 GSGGNGGNGGQSGWLYGNGGDGGNSGSGGTFESAGGSVLSGAQGGGFAASAGNGGNSGLF 328 G G N G SG + NGG G GG + +G S + GGG + GG SG Sbjct: 6 GRGHNTGAHSTSGNI--NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG-- 61 Query: 329 GNGGSGGNGGNGGLGQAASGDDS 351 G+GG GN G G G+ S Sbjct: 62 --HGNGGGNGNSGGGSGTGGNLS 82 Score = 33.1 bits (75), Expect = 0.003 Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 3/114 (2%) Query: 320 GNGGNSGLFGNGGSGGNGGNGGLGQAASGDDSQGGIGGDGAQGGNGGKAGFFYGNGG--N 377 G G N+G G+ NGG GLG D G + GG G + G G N Sbjct: 6 GRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 378 GGFGGNGANGGDNSGTSSAVNGAGGMGGWGGAGGQAGLIGNGGTGGAGGSGGAG 431 GG GN G G SAV G + AG + + GA + A Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 30.8 bits (69), Expect = 0.014 Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 7/113 (6%) Query: 379 GFGGNGANGGDNSGTSSAVNGAGGMGGWGGAGGQAGLIGNGGTGGAGGSGGAGGSGGTEN 438 G G G N G +S + + G G+G GGA G+G + GG GSG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASD-----GSGWSSENNPWGGGSGSGIHWG 57 Query: 439 GDAGPGGFGGHGGDALLFGNGGNGANGGNTGAPG--TLSGGGTGTVYLTSNGG 489 G +G G GG+G G GGN + A G LS G G + ++ + G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 30.5 bits (68), Expect = 0.024 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 131 SGGDGGWLLGNGGNGGSGAAGQAGGNGGSAGL-LGNGGAGGAGGAGASGAAGDSGLTGGN 189 +GG G +G G + GSG + + GG +G + GG G G G +G +G TGGN Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 190 G 190 Sbjct: 81 L 81
>PF07520#Virulence protein SrfB Length = 1041 Score = 31.9 bits (72), Expect = 0.007 Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 2/76 (2%) Query: 46 MSAALRLVKSSTGNHDGQLPPIATSYRCAAAAWASRTIKHTA--APKTRQRLPHRIHAAV 103 +S AL LVK G DG W + + Q+ RI + Sbjct: 518 VSGALTLVKEMLGTKDGTSTIAVEGKPELLVDWDEASCTQLVYLYSELTQKFDGRIDTFL 577 Query: 104 DHLATPRRRAPGSPSP 119 D PR G SP Sbjct: 578 DLKGQPRPDPAGGESP 593
>FLAGELLIN#Flagellin signature. Length = 507 Score = 42.7 bits (100), Expect = 8e-06 Identities = 35/284 (12%), Positives = 50/284 (17%), Gaps = 2/284 (0%) Query: 755 GSGGAGSNGGNNTGSTGGVGADGGKGGTGGTAGAAGVGVDGGAAGSIGTGGVGGQGGDGG 814 G N G T + + G G G G + + G D Sbjct: 139 QDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTY 198 Query: 815 SGGTGALGADGTNPTGGGRGGQGGQGGQGGDGGSGIGGVGGGAGGHGGVGGSGGTGGTGG 874 + G D +G + G Sbjct: 199 AVGANKYRVDVN--SGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKST 256 Query: 875 SNTASTGGVGADGGKGGTGGTAGAAGVGVDGGAAGSIGTGGVGGTGGEGGSGGTGVAGAS 934 + TA + G G T GV G T G VA + Sbjct: 257 AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT 316 Query: 935 GITPAVGGPGGQGGAGGTGGDGGAGIDGVGGGAGGQGGQGGAGGNGGMGGTYTGTGPGSS 994 V Q N + G T G+ Sbjct: 317 AGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAE 376 Query: 995 ASGGTGGAGGAGGDGGAPGAGSTTGGVGGNGGKGGNGGFGAGNS 1038 + G + +G N Sbjct: 377 YTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANP 420 Score = 42.7 bits (100), Expect = 9e-06 Identities = 28/272 (10%), Positives = 46/272 (16%), Gaps = 3/272 (1%) Query: 644 GSGGAGSNGGNNTGSTGGVGADGGKGGTGGTAGAAGVGVDGGAAGSIGTGGVGGTGGNGG 703 G N G T + + + G G V+G ++G G Sbjct: 139 QDNQMKIQVGANDGETITIDL---QKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGY 195 Query: 704 AGADNDVNGTSGTAPTAGGQGGQGGQGGQGGDGGSGIGGVGGGAGGHGGVGGSGGAGSNG 763 N + + G + Sbjct: 196 DTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKS 255 Query: 764 GNNTGSTGGVGADGGKGGTGGTAGAAGVGVDGGAAGSIGTGGVGGQGGDGGSGGTGALGA 823 T + G G T GV G +G Sbjct: 256 TAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADI 315 Query: 824 DGTNPTGGGRGGQGGQGGQGGDGGSGIGGVGGGAGGHGGVGGSGGTGGTGGSNTASTGGV 883 Q + + G + + G Sbjct: 316 TAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGA 375 Query: 884 GADGGKGGTGGTAGAAGVGVDGGAAGSIGTGG 915 G T + +D A+G Sbjct: 376 EYTANAAGDKVTLAGKTMFIDKTASGVSTLIN 407 Score = 31.2 bits (70), Expect = 0.034 Identities = 32/243 (13%), Positives = 42/243 (17%), Gaps = 3/243 (1%) Query: 939 AVGGPGGQGGAGGTGGDGGAGIDGVGGGAGGQGGQGGAGGNGGMGGTYTGTGPGSSASGG 998 G G + G D GA +G T + Sbjct: 174 VNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAAN 233 Query: 999 TGGAGGAGGDGGAPGAGSTTGGVGGNGGKGGNGGFGAGNSSGSS---AGFGFGGGGGGGG 1055 + A TT G G G G + G F G Sbjct: 234 GQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGN 293 Query: 1056 AGGHGGNGGGGGASGGQGGAGGDGGLGGTAVSPTTGSAAGGGFGGGGGGGGNATGAAGGT 1115 G + G A G + S G + Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353 Query: 1116 GGGGGGGGAGAAAAVAAAGGGGGGGGAAGGPGGTAGNGGVGGNAFGGGSSGTGGTAGAGA 1175 G A G T + + G S A A Sbjct: 354 KLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAA 413 Query: 1176 PGG 1178 Sbjct: 414 KKS 416
>ENTEROTOXINB#Heat labile enterotoxin B chain signature. Length = 124 Score = 31.2 bits (70), Expect = 0.002 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 157 SQLVSAQAKAIERVRDVLIVERIALIGTFALCLW 190 SQ + +Q KAIER++D L + + LC+W Sbjct: 76 SQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVW 109
>cloacin#Cloacin signature. Length = 551 Score = 39.7 bits (92), Expect = 2e-04 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 683 GGNVGGGNVGVANVGDGNVGGANVGGANVGGANTGDG----NWGWGNTGGGNIGWGNTGV 738 GG+ G N G + GN+ G G GGA+ G G N WG G I WG Sbjct: 3 GGDGRGHNTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 739 GNFGFGNQGSGNIGIGLSGDHQ 760 G GN SG G G G+ Sbjct: 62 HGNGGGNGNSGG-GSGTGGNLS 82 Score = 38.5 bits (89), Expect = 4e-04 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 1621 GNVGDGNVGVANVGDGNVGGANVGGANVGGANTGDG----NWGWGNTGGGNIGWGNTGVG 1676 G G G+ A+ GN+ G G GGA+ G G N WG G I WG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1677 NFGFGNQGSGNIGIGLSGDHQ 1697 G GN SG G G G+ Sbjct: 63 GNGGGNGNSGG-GSGTGGNLS 82 Score = 38.5 bits (89), Expect = 4e-04 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 2552 GNVGDGNVGVANVGDGNVGGANVGGANVGGANTGDG----NWGWGNTGGGNIGWGNTGVG 2607 G G G+ A+ GN+ G G GGA+ G G N WG G I WG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 2608 NFGFGNQGSGNIGIGLSGDHQ 2628 G GN SG G G G+ Sbjct: 63 GNGGGNGNSGG-GSGTGGNLS 82 Score = 35.5 bits (81), Expect = 0.004 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 13/109 (11%) Query: 663 SANVGDANLGSANVGSANVGGGNVGGGNVGVANVGDGNVGGANV-GGANVGGANTGDGNW 721 S G + A+ S N+ GG G G G A+ G G N GG + G + G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 722 GWGNTGGGNIGWGNTGVGN---------FGF---GNQGSGNIGIGLSGD 758 G GN G G+ GN FGF G+G + + +S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 33.1 bits (75), Expect = 0.019 Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 4/109 (3%) Query: 239 GSGNWGGFNLGSGNIGSYNFGPGNLGSYNIGFGNAGDYNVGFGNSGLGNIGFGNSGSNNL 298 G G+ G + SGNI G G G + G G + + N G SG G G SG N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 299 GIGLTGSGQVGFGGWNSGSGNVGLFNSGVGNVGLFNSGTGNWGVGNSGE 347 G G G GG S F G L G G V S Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAF----GFPALSTPGAGGLAVSISAG 110 Score = 33.1 bits (75), Expect = 0.019 Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 4/109 (3%) Query: 1183 GSGNWGGFNLGSGNIGSYNFGPGNLGSYNIGFGNAGDYNVGFGNSGLGNIGFGNSGSNNL 1242 G G+ G + SGNI G G G + G G + + N G SG G G SG N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1243 GIGLTGSGQVGFGGWNSGSGNVGLFNSGVGNVGLFNSGTGNWGVGNSGE 1291 G G G GG S F G L G G V S Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAF----GFPALSTPGAGGLAVSISAG 110 Score = 33.1 bits (75), Expect = 0.019 Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 4/109 (3%) Query: 2111 GSGNWGGFNLGSGNIGSYNFGPGNLGSYNIGFGNAGDYNVGFGNSGLGNIGFGNSGSNNL 2170 G G+ G + SGNI G G G + G G + + N G SG G G SG N Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 2171 GIGLTGSGQVGFGGWNSGSGNVGLFNSGDGNVGLFNSGTGNWGVGNSGE 2219 G G G GG S F G L G G V S Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAF----GFPALSTPGAGGLAVSISAG 110 Score = 32.4 bits (73), Expect = 0.032 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 226 GNVGFGNVGGLNFGSGNWGGFNLGSGNIGSYNFGPGNLGSYNIGFGNAGDYNVG-FGNSG 284 G G G+ G + SGN G G G G + G G S N +G + G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSG 61 Query: 285 LGNIGFGNSGSNNLGIGLTGS 305 GN G + G G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 32.4 bits (73), Expect = 0.032 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 1170 GNVGFGNVGGLNFGSGNWGGFNLGSGNIGSYNFGPGNLGSYNIGFGNAGDYNVG-FGNSG 1228 G G G+ G + SGN G G G G + G G S N +G + G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSG 61 Query: 1229 LGNIGFGNSGSNNLGIGLTGS 1249 GN G + G G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 32.4 bits (73), Expect = 0.032 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 2098 GNVGFGNVGGLNFGSGNWGGFNLGSGNIGSYNFGPGNLGSYNIGFGNAGDYNVG-FGNSG 2156 G G G+ G + SGN G G G G + G G S N +G + G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSG 61 Query: 2157 LGNIGFGNSGSNNLGIGLTGS 2177 GN G + G G S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 32.4 bits (73), Expect = 0.036 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 719 GNWGWGNTGGGNIGWGNTGVGNFGFGNQGSGNIGIGLSGDHQVGFGGWNSGSGNVGLFNS 778 G G G+ G + GN G G G G + G G S ++ GG SG G S Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG--GS 60 Query: 779 GDGNIGFFNSGSGNFGIANSGS 800 G GN G + G G + S Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLS 82 Score = 32.4 bits (73), Expect = 0.036 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 1656 GNWGWGNTGGGNIGWGNTGVGNFGFGNQGSGNIGIGLSGDHQVGFGGWNSGSGNVGLFNS 1715 G G G+ G + GN G G G G + G G S ++ GG SG G S Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG--GS 60 Query: 1716 GDGNIGFFNSGSGNFGIANSGS 1737 G GN G + G G + S Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLS 82 Score = 32.4 bits (73), Expect = 0.036 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 2587 GNWGWGNTGGGNIGWGNTGVGNFGFGNQGSGNIGIGLSGDHQVGFGGWNSGSGNVGLFNS 2646 G G G+ G + GN G G G G + G G S ++ GG SG G S Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG--GS 60 Query: 2647 GDGNIGFFNSGSGNFGIANSGS 2668 G GN G + G G + S Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLS 82 Score = 32.0 bits (72), Expect = 0.046 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 13/109 (11%) Query: 1600 SANVGDANLGSANVGSANVGGGNVGDGNVGVANVGDG-------NVGGANVG---GANVG 1649 S G + A+ S N+ GG G G G A+ G G GG+ G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1650 GANTGDGNWGWGNTGGGNIGWGNTGVGNFGF---GNQGSGNIGIGLSGD 1695 N G G +G G FGF G+G + + +S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.0 bits (72), Expect = 0.046 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 13/109 (11%) Query: 2531 SANVGDANLGSANVGSANVGGGNVGDGNVGVANVGDG-------NVGGANVG---GANVG 2580 S G + A+ S N+ GG G G G A+ G G GG+ G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 2581 GANTGDGNWGWGNTGGGNIGWGNTGVGNFGF---GNQGSGNIGIGLSGD 2626 N G G +G G FGF G+G + + +S Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.7 bits (82), Expect = 2e-04 Identities = 27/124 (21%), Positives = 31/124 (25%), Gaps = 3/124 (2%) Query: 216 PPAPEDVAAPAPADLPPAPEDVAPPVELVGNDVPAPVDLPPAPEDLPPAPEDLAPPAPAD 275 P P V APADL P PP +V + P E + P P Sbjct: 46 PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 105 Query: 276 LPPAPEDLAPPAPADLPPAPEDLAPPAPADLPPAPEDLAPPAPADLPPAPEDLPPAPEDL 335 P D+ P A P P P A P P Sbjct: 106 KPVKKV---EQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSR 162 Query: 336 PPPA 339 P Sbjct: 163 NQPQ 166 Score = 33.0 bits (75), Expect = 0.002 Identities = 21/87 (24%), Positives = 29/87 (33%) Query: 262 PPAPEDLAPPAPADLPPAPEDLAPPAPADLPPAPEDLAPPAPADLPPAPEDLAPPAPADL 321 P P + APADL P PP P P + P P + P E P Sbjct: 46 PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 105 Query: 322 PPAPEDLPPAPEDLPPPADADNPPVDV 348 P + P + P + +P + Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENT 132 Score = 31.5 bits (71), Expect = 0.004 Identities = 26/131 (19%), Positives = 31/131 (23%), Gaps = 3/131 (2%) Query: 172 DVPAPADLPPAPEDLPPAPEDLAPPAPADLPPAPEDLPPAPQDLPPAPEDVAAPAPADLP 231 V AP DL PP PP P P + P P AP + Sbjct: 39 QVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP---KEAPVVIE 95 Query: 232 PAPEDVAPPVELVGNDVPAPVDLPPAPEDLPPAPEDLAPPAPADLPPAPEDLAPPAPADL 291 P + V D+ P E+ AP P P Sbjct: 96 KPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVAS 155 Query: 292 PPAPEDLAPPA 302 P P Sbjct: 156 GPRALSRNQPQ 166 Score = 31.1 bits (70), Expect = 0.006 Identities = 18/90 (20%), Positives = 23/90 (25%) Query: 253 DLPPAPEDLPPAPEDLAPPAPADLPPAPEDLAPPAPADLPPAPEDLAPPAPADLPPAPED 312 AP DL P PP P P + P P + P E P P + Sbjct: 52 VTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 111 Query: 313 LAPPAPADLPPAPEDLPPAPEDLPPPADAD 342 P + P P + Sbjct: 112 EQPKRDVKPVESRPASPFENTAPARPTSST 141 Score = 29.6 bits (66), Expect = 0.016 Identities = 21/117 (17%), Positives = 30/117 (25%), Gaps = 3/117 (2%) Query: 125 DVPAPAALDAPLDAPGINGEPAPLAPPPGDDVPPPADPAPPVELAANDVPAPADLPPAPE 184 + APA L+ P + P P+ P + P P P + P P P + Sbjct: 53 TMVAPADLEPPQA---VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Query: 185 DLPPAPEDLAPPAPADLPPAPEDLPPAPQDLPPAPEDVAAPAPADLPPAPEDVAPPV 241 + D+ P P P P P P Sbjct: 110 KVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQ 166 Score = 29.6 bits (66), Expect = 0.019 Identities = 21/112 (18%), Positives = 27/112 (24%), Gaps = 1/112 (0%) Query: 130 AALDAPLDAPGINGEPAPLAPPPGDDVPPPADPAPPVELAANDVPAPADLPPAPEDLPPA 189 L AP + PP PPP P P + P E P Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 190 PEDLAPPAPADLPPAPEDLPPAPQDLPPAPEDVAAPAPADLPPAPEDVAPPV 241 P+ P + D+ P E+ A P P Sbjct: 101 PKP-KPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVT 151
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 32.9 bits (75), Expect = 5e-04 Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 19/160 (11%) Query: 23 ERRRAWLHKLTPGKVVVAVVGLLVAAALGLLAALFVFSYRPDRE------VDAQAAGAAV 76 ++ AW+ + +A G++ AAL L + + DR A + Sbjct: 31 SKKLAWV--VAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDATI 88 Query: 77 SA--------ASDGAIAILSYSPDTLDRDFSSARSHLTGEFLSYYDQF--TQQIVAPAAK 126 + + + + F + + +F T +P Sbjct: 89 TYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQSPQNI 148 Query: 127 RKSVRTSAVVLRAAISELHPDSAVVLLFVNQTTQSADRPE 166 + V ++ +S L + A V T S Sbjct: 149 LANRTDVFVEIK-RVSFLGGNVAQVYFTKESVTGSNSTKT 187
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.018 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 13/153 (8%) Query: 20 AADSRSAPVDEDEIGGTAAEMRALAEEAEAEAAEAEALAAAAGARARALQLRRRAERAEA 79 A AP E T AE + E E E +A A R A + + + Sbjct: 1023 APVPPPAPATPSETTETVAE-NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 80 AAEVD-----------AACEATHEGAADGQATASHNGAEEPSANSADVLESDDVAETEEL 128 EV + T + +A +E ++ V + +ET + Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 129 SADDD-EPAAAGSAEADESEADELADESERSRR 160 A+ E + + +S+ + AD + ++ Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 8e-11 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%) Query: 4 ARRIGAPDAKNRGVLLDTAEELMIEEGYAAVTSRRVASEAGLKPQLVHYYFRTMEELFLE 63 AR+ + R +LD A L ++G ++ + +A AG+ ++++F+ +LF E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 64 LFRRRAEEGLRAQAQALQSPKPLWALWRLGSDPAFARISMEFMALANHRKALRAEIAHYA 123 ++ + Q+ P L L +E R+ L I H Sbjct: 62 IWELSESN-IGELELEYQAKFPGDPLSVLR---EILIHVLESTVTEERRRLLMEIIFHKC 117 Query: 124 ERFRD 128 E + Sbjct: 118 EFVGE 122
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.9 bits (142), Expect = 4e-12 Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 16/208 (7%) Query: 8 LQGKVAVVTGGAGGIGRALGKRFGMEGMKVVLADVLAEPLDRATRALTDEGIEAVGVVTD 67 ++GK+A +TG A GIG A+ + +G + D E L++ +L E A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 VTDYSSVEALAKETLHRFGAVHVVCNNAGTGGVSEGYMWEHDLADWHWGIDVNVVGVIHG 127 V D ++++ + G + ++ N AG + G + +W VN GV + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGV--LRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 128 IKAFVPILLERGEGHVVNTCSGNGGFAPIARGAMGGP--AMAVYPMTKAAVLCLTESLYT 185 ++ +++R G +V + G P +MA Y +KAA + T+ L Sbjct: 124 SRSVSKYMMDRRSGSIVT----------VGSNPAGVPRTSMAAYASSKAAAVMFTKCL-- 171 Query: 186 HLEMTGTRVRAHALFPGGFLNTGIWESW 213 LE+ +R + + PG W W Sbjct: 172 GLELAEYNIRCNIVSPGSTETDMQWSLW 199
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 2e-04 Identities = 37/114 (32%), Positives = 43/114 (37%), Gaps = 7/114 (6%) Query: 220 GDGGPGSPGAASFDPTVAGGAGGPGGDARGIGDGGRGGDGGPGATGAPGGRGSDGGPGGK 279 GDG + GA S + GG G G GG G + P G GS G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVG------GGASDGSGWSSENNPWGGGSGSGIH-W 56 Query: 280 GGNAGDYGNGGTGGTGGIGGAGGPGSPGGTPGAQGFRAGDAGNGGVGGIGGDGG 333 GG +G GG G +GG G GG S P A GF A G + G Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 36.6 bits (84), Expect = 3e-04 Identities = 31/88 (35%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 275 GPGGKGGNAGDYGNGGTGGTGGIGGAGGPGSPGGTPGAQGFRAGDAGNGGVGGIGGDGGH 334 G G+G N G + G GG G G GG G+ + + GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNIN----GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 335 IKGHGGAGGIGGQGGAGGIGGDGQAGSA 362 GHG GG G GG G GG+ A +A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.1 bits (75), Expect = 0.003 Identities = 22/68 (32%), Positives = 28/68 (41%) Query: 449 NGGQGGLSGDGATRAAHGVQGTMGDGGDGGDGGNGSTTSDQPDIDGGNGGYGGWGFNGGN 508 +GG G GA + + G G GG +GS S + + GG G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 509 GGNGGDGG 516 GNGG G Sbjct: 62 HGNGGGNG 69 Score = 33.1 bits (75), Expect = 0.003 Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 2/84 (2%) Query: 475 GDGGDGGNGSTTSDQPDIDGGNGGYGGWGFNGGNGGNGGDGGTRPKGTVFFRSGGDGGFG 534 G G G N S +I+GG G G G G + G+G P G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG--GASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 535 GWGGNGYGGVGGDGGNGGWGGNGV 558 G G G G G G G + V Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 32.8 bits (74), Expect = 0.004 Identities = 23/81 (28%), Positives = 28/81 (34%) Query: 372 SGGDGARGGNGGDGGAGGAGGQALAEGFHDGAAGTGGVGGNGGDGGNGADGGDGHSGDPS 431 SGGDG G +G G G GA+ G G G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 432 WRSGGDGGNGGNGAYGGNGGQ 452 +GG GN G G+ G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 31.2 bits (70), Expect = 0.013 Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 354 GGDGQAGSAGEFPGDRGGSGGDGARGGNGGDGGAGGAG------GQALAEGFHDGAAGTG 407 GGDG+ + G +GG G GG G G G H G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 408 GVGGNGGDGGNGADGGDGHS 427 G GG G+ G G+ G S Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 30.5 bits (68), Expect = 0.021 Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Query: 322 NGGVGGIGGDGGHIKGHGGAGGIGGQGGAGGIGGDGQAGSAGEFPGDRGGSGGDGARGGN 381 NGG G+G GG G G + GG G G GS G GG+G GG Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH------GNGGGNGNSGGG 74 Query: 382 GGDGGAGGAGGQALAEGFHDGAAGTGGVGG 411 G GG A +A GF A T G GG Sbjct: 75 SGTGGNLSAVAAPVAFGF--PALSTPGAGG 102 Score = 30.5 bits (68), Expect = 0.024 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 543 GVGGDGGNGGWGGNGVNRYGVLNPGWGGDGGNGGAGGTAYTS--GGVYAGGPVQPGTEGT 600 G G G N G N G G G + G+G ++ + GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 601 GPSGDHGGFGGSGGIGGHG 619 G G +G GG G GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.3 bits (169), Expect = 7e-17 Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 7/189 (3%) Query: 12 LPAAAELFAERGLNDTKIEDVAATTGIAKATLYYYFAGKEEILAFLLEDVLQHVAD-EVT 70 L A LF+++G++ T + ++A G+ + +Y++F K ++ + + E ++ + E+ Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76 Query: 71 AIVEADGTAAQRLHTVINAQLRVMAQRPAVCRALI---GELGRAARMPAIADMITTAYFE 127 + G L ++ L + + M + E Sbjct: 77 YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLE 136 Query: 128 PVET---LLRAGAADGSLVALDKPRAAAIALFGAVTISALTYLITDDALNEELIARTIHD 184 + L+ L A R AAI + G ++ +L + + + AR Sbjct: 137 SYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVA 196 Query: 185 VAFIGLRPR 193 + Sbjct: 197 ILLEMYLLC 205
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 3e-14 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 12/155 (7%) Query: 18 PRRLRSRTRLLDAATKLLSAGGIEAVTIDAVTKASKVARTTLYRHFSSSTQLLAATFERL 77 +R +LD A +L S G+ + ++ + KA+ V R +Y HF + L + +E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 78 LPQVHPPPAT------GSMRDQLIELLSRQATLFQEAPLHVTTLAWVALGPTPDGTQETQ 131 + G L E+L L + + E Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEER--RRLLMEIIFHKCEFVGEMA 124 Query: 132 DRHALRARIIDQYRQPFVALL----QSPEARADLD 162 + + + L ++ ADL Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLM 159
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 57.9 bits (140), Expect = 2e-10 Identities = 34/229 (14%), Positives = 85/229 (37%), Gaps = 23/229 (10%) Query: 212 IASAEEDLVVISIATAGLIAMILLVVYRSVFTALLPLLVIGVSLAVGRGVLSALGESGMP 271 + + ++V L+ +++ + +++ L+P + + V L +L+A G S Sbjct: 333 VQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYS--- 389 Query: 272 VSQFTIAFMTVILLGAGTDYSVFLISRYHEQRR-QNVPPDLSVINATATIGRVILASAAT 330 ++ T+ M V+ +G D ++ ++ +PP + + + I ++ A Sbjct: 390 INTLTMFGM-VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMV 448 Query: 331 VAFAFLAMVFAKLS---VFAALGPACAIAVFVGFAATVTLFPPVLALAAKRGIGEPKADR 387 ++ F+ M F S ++ A+ + + L P + A K E ++ Sbjct: 449 LSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK 508 Query: 388 TRRYWNWIAV--------------AVVRRPVPLLVASLALVLGLAAVAL 422 ++ W ++ L+ +V G+ + L Sbjct: 509 -GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFL 556 Score = 39.4 bits (92), Expect = 8e-05 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 11/174 (6%) Query: 210 DQIASAEEDLVVISIATAGLIAMILLVVYRSVFTALLPLLVIGVSLAVGRGVLSALGESG 269 Q + + + ++ + L +Y S + +LV+ + + GVL A Sbjct: 863 YQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIV---GVLLAATLFN 919 Query: 270 MPVSQFT-IAFMTVILLGAGTDYSVFLISRYHE-QRRQNVPPDLSVINATATIGRVILAS 327 + + +T +G ++ ++ + ++ + + A R IL + Sbjct: 920 QKNDVYFMVGLLT--TIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMT 977 Query: 328 AATVAFAFLAMVFAKLSVFAALGPACAIAVFVG-FAATVT--LFPPVLALAAKR 378 + L + + + A I V G +AT+ F PV + +R Sbjct: 978 SLAFILGVLPLAIS-NGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 34.8 bits (80), Expect = 0.002 Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 27/183 (14%) Query: 841 IQRLLSADFHQLAFATLVIVGLILVVL--LRA-----LVAPLYLLGTVVLNYGAALGLGT 893 +Q + L A +++ ++ + L +RA + P+ LLGT + + T Sbjct: 333 VQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT 392 Query: 894 LVFQYGLGKEIAWPVPLLAFIILVAVGADYNMLL---ISRLREESAHNIRVGVLRTVANT 950 L + ++ + + D +++ + R+ E + ++++ Sbjct: 393 LT--------------MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQI 438 Query: 951 GSVITSAGLIFAASM--FGLIAGSIA-IMIQAGFIIGCGLLLDTFVVRTLTVPAIATLLR 1007 + ++ +A GS I Q I + L V LT ATLL+ Sbjct: 439 QGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498 Query: 1008 EAS 1010 S Sbjct: 499 PVS 501
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.0 bits (106), Expect = 5e-08 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 2/86 (2%) Query: 19 AAVLDATRAVATLGGFKAVHFKSVAKQAGVTVGSVYDHFTSKTHLLVTLLAREFVRLDE- 77 +LD + + G + +AK AGVT G++Y HF K+ L + + E Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 78 -ERDWSTCAASPIRRVESLTRRLHDE 102 + P+ + + + + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLES 99
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 3/97 (3%) Query: 51 ANTGSLRDRRRAELLSQIQGTAHQLFAERGFAAVTTEDIAAASGISISTYFRYAPTKEDL 110 A + + I A +LF+++G ++ + +IA A+G++ + + K DL Sbjct: 2 ARKTKQEAQETRQ---HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL 58 Query: 111 LIAPLRQTVAEIVAAYGTQPSDQSAADALIALFAETA 147 + + I + + Sbjct: 59 FSEIWELSESNIGELELEYQAKFPGDPLSVLREILIH 95
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 3e-09 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 8/154 (5%) Query: 20 RRRNRRQEETFRRVLAAGMDTLRASSYPDLTVRMVAARAGVSPATAYTYFSSKNHLIAEV 79 R+ + +ET + +L + ++ +A AGV+ Y +F K+ L +E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 80 YLDLVRKV-PFFTDVNVAMRDRVVQALRHLALVVADEPEVGAACTAAL-------LGGGA 131 + + + + LR + + V + + G Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 132 DPAVRAVRDQIGAEIHRRIASAIGPGAQPGTIAA 165 V+ + + E + RI + + + A Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPA 156
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (283), Expect = 3e-32 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 4/229 (1%) Query: 13 AIVAGASSGIGAATAVELAAHGFPVALGARRVQKCEEIVEKIRADGGDAVALALDVTDAD 72 A + GA+ GIG A A LA+ G +A +K E++V ++A+ A A DV D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 73 SVKDFVHQATERLGDIEVLVAGAGDTYFGRLYEIDTETFESQVQIHLIGANRLATAVLPG 132 ++ + + +G I++LV AG G ++ + E +E+ ++ G + +V Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 133 MLERQRGDLIFVGSDVALRQRPHMGAYGAAKAALVAMVTNLQMELEGTGLRASIVHPGPT 192 M++R+ G ++ VGS+ A R M AY ++KAA V L +EL +R +IV PG T Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 193 KTAMGWSLPVESIGPALEDWAKWGQARHDYFL----RASDIARAITFVA 237 +T M WSL + G + L + SDIA A+ F+ Sbjct: 191 ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.008 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 28/114 (24%) Query: 361 PRLRQVLSNLVGNALQH----TPDSADVTVRVGTAGQNAVLEVADKGPGMPAEDAARVFE 416 P + ++ LV N ++H P + ++ LEV + G Sbjct: 256 PPM--LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT------ 307 Query: 417 RFYRTDSSRARASGGTGLGLSIVHS-LVKAHGGD--VTLTTAPGEGCCFRVTLP 467 TG GL V L +G + + L+ G+ V +P Sbjct: 308 ------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA-MVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 109 bits (273), Expect = 9e-30 Identities = 36/136 (26%), Positives = 63/136 (46%) Query: 14 ARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGF 73 A ILV DD+ I +L+ +L G++V +N A D V+ DV+MP + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 74 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133 +L R++ D P L ++A+++ I G DY+ KPF L E++ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 134 KGSAEPRNSRLTFADI 149 + ++ + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.4 bits (190), Expect = 1e-18 Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 10/201 (4%) Query: 6 NVTDLSGRVAVVTGAAAGLGRAEAVGLARLGATVVVNDIGSALDASDVIDEISAVGAKAI 65 N + G++A +TGAA G+G A A LA GA + D V+ + A A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPE-KLEKVVSSLKAEARHAE 60 Query: 66 AVAGDISQRATADELIAT-ADGLGGLDVVVNNAGITRDRMLFNMTDEDWDQVIGVHLRGH 124 A D+ A DE+ A +G +D++VN AG+ R ++ +++DE+W+ V+ G Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 125 FLLTRNAATYWRQKAKAAGGSIFGRLVNTSSEAGLVGPVGQANYGAAKAGITALTLSAAR 184 F +R+ + Y + G +V S V A Y ++KA T Sbjct: 121 FNASRSVSKYMMDRRS-------GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173 Query: 185 ALGRYGVCANAICP-RARTAM 204 L Y + N + P T M Sbjct: 174 ELAEYNIRCNIVSPGSTETDM 194
>cloacin#Cloacin signature. Length = 551 Score = 38.2 bits (88), Expect = 2e-04 Identities = 34/121 (28%), Positives = 46/121 (38%) Query: 1192 TGGTGGAGNDGTINAGTGGNGGAGGRAGSGGANGGNGGTGGTGGDGGKGGGGAVGGSGGD 1251 +GG G N G + NGG G GGA+ G+G + GG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1252 GGDGGINNGAGANGNGGGGGTGGTGSIGAAGGNGGQGGSGGAAGSGGGTAGNGGAGGVGG 1311 G+GG N +G GG + + G+GG A S A + + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Query: 1312 A 1312 A Sbjct: 122 A 122 Score = 37.0 bits (85), Expect = 6e-04 Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 1/114 (0%) Query: 1247 GSGGDGGDGGINNGAGANGNGGGGGTGGTGSIGAAGGNGGQGGSGGAAGSGGGTAGNGGA 1306 G G G + G ++ +G G G G G+ +G + GG +GSG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1307 GGVGGAGGTGGVGGGGGDGGAGALAGTGGTGGSGGTGGASGAGGSGGGGGLSGS 1360 G GG G +GG G GG+ A A G T GA G S G LS + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPAL-STPGAGGLAVSISAGALSAA 115 Score = 37.0 bits (85), Expect = 6e-04 Identities = 33/102 (32%), Positives = 37/102 (36%) Query: 1292 GAAGSGGGTAGNGGAGGVGGAGGTGGVGGGGGDGGAGALAGTGGTGGSGGTGGASGAGGS 1351 G G G T + +G + G GVGGG DG + GGSG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1352 GGGGGLSGSGQSGANGGTGGASQEGQDGQASTDSDGGAGGAG 1393 G GGG SG GG A S GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.8 bits (82), Expect = 0.001 Identities = 29/101 (28%), Positives = 39/101 (38%) Query: 661 GKGGDGGAGGAAGANGGTGGGGGIGGGGGVGGDGGNGGSGNTGTSSAPAGGTGGIGGTGA 720 G+G + GA +G G G G+GGG G + + G S + GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 721 DGGAGGNGGAAGGAGGTGGQGGTGGGAGKGGTGGAGGAAVT 761 G GG+ G + G T GAGG AV+ Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 35.1 bits (80), Expect = 0.002 Identities = 26/83 (31%), Positives = 32/83 (38%) Query: 1283 GNGGQGGSGGAAGSGGGTAGNGGAGGVGGAGGTGGVGGGGGDGGAGALAGTGGTGGSGGT 1342 G G+G + GA + G G GVGG G + G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1343 GGASGAGGSGGGGGLSGSGQSGA 1365 G G G SGGG G G+ + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVA 85 Score = 34.7 bits (79), Expect = 0.003 Identities = 26/79 (32%), Positives = 34/79 (43%) Query: 207 GGMGGNGGSGSWLIGGGGAGGAGGIGGTGGGTGGVGGTGGDAGWLVGAGGSGGSGGIGAT 266 GG G +G+ G GG G+G GG + G G + + W G+G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 267 GTGSGGAAGNGGNGGAGGL 285 G G G GG+G G L Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.003 Identities = 30/97 (30%), Positives = 34/97 (35%) Query: 1226 GNGGTGGTGGDGGKGGGGAVGGSGGDGGDGGINNGAGANGNGGGGGTGGTGSIGAAGGNG 1285 G G G G GG G G G G + N GGG G+G G+ GNG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1286 GQGGSGGAAGSGGGTAGNGGAGGVGGAGGTGGVGGGG 1322 G G+ G GG A G G GG Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.3 bits (78), Expect = 0.004 Identities = 28/86 (32%), Positives = 35/86 (40%) Query: 774 TGGTGGHGGTGGHGGTGGAAGNGGAGGAGGQAGDGGSGGEGGDGGTGAQGTTVSLPGSGG 833 +GG G TG H +G G G GG A DG + G G+ + G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 834 NAGNGGNAGGGGVGGTGGAGATGAPA 859 + GGN GG GTGG + A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 34.3 bits (78), Expect = 0.004 Identities = 26/80 (32%), Positives = 30/80 (37%) Query: 727 NGGAAGGAGGTGGQGGTGGGAGKGGTGGAGGAAVTPGLGIGDEPAGGTGGTGGHGGTGGH 786 +GG G G G G GGA+ G + P GG G+G H G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 787 GGTGGAAGNGGAGGAGGQAG 806 G GG GN G G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 33.9 bits (77), Expect = 0.005 Identities = 26/81 (32%), Positives = 33/81 (40%) Query: 1164 SPAGGNGSAGGDGGDGGDVASGATGTAGTGGTGGAGNDGTINAGTGGNGGAGGRAGSGGA 1223 S G G G G++ G TG GG + N GG G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1224 NGGNGGTGGTGGDGGKGGGGA 1244 +G GG G +GG G GG + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 33.5 bits (76), Expect = 0.006 Identities = 34/97 (35%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 294 AGGQGGDGAAGAAAAAAGGTGGDGGLGGNGGAGGAGGGGPVLFGHGGAGGLG-GQGGTGG 352 +GG G GA + + GG GLG GGA G GG G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 353 IGGTGGAGTTSIAAGTGGNGGAGGAAGGGGTAGAAGP 389 G GG G + +GTGGN A A G + P Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTP 98 Score = 33.1 bits (75), Expect = 0.008 Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 631 GGHGGAGGNGVDGADANVFTGDNGGDGTAGGKGGDGGAGGAAGANGGTGGGGGIGGGGGV 690 GG G G N+ G G G G G + GG+G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 691 GGDGGNGGSGNTGTSSAPAGGTGGIGGTGADGGAGGNGGAAGGAGGTG 738 G GGNG SG +G G + A G + GAGG Sbjct: 63 GNGGGNGNSGGG------SGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.011 Identities = 24/80 (30%), Positives = 32/80 (40%) Query: 497 GGAAGSGGGGQTGSLGIGGTGGHGGAGGDGTPGGNGAAGPTAGTGDPGVDGGAGGNGGAG 556 G G G + S I G G GG + G ++ G G GG G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 557 GQGGSNGTGGDGGTGGSGAT 576 GG+ +GG GTGG+ + Sbjct: 64 NGGGNGNSGGGSGTGGNLSA 83 Score = 32.8 bits (74), Expect = 0.012 Identities = 23/76 (30%), Positives = 27/76 (35%) Query: 433 GGNGGNGGAGGAALGGGAAGDGGQGGHGGAGGMGGAGANGITGGGVTGAGGNGGDGGQGG 492 G N G G GG G G G+G G G GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 493 EPGTGGAAGSGGGGQT 508 +GG +G+GG Sbjct: 68 NGNSGGGSGTGGNLSA 83 Score = 32.8 bits (74), Expect = 0.013 Identities = 30/101 (29%), Positives = 37/101 (36%) Query: 451 AGDGGQGGHGGAGGMGGAGANGITGGGVTGAGGNGGDGGQGGEPGTGGAAGSGGGGQTGS 510 +G G+G + GA G G TG GV G +G P GG+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 511 LGIGGTGGHGGAGGDGTPGGNGAAGPTAGTGDPGVDGGAGG 551 G GG G+ G G + A P A GAGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.013 Identities = 33/79 (41%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Query: 1176 GGDGGDVASGATGTAGT--GGTGGAGNDGTINAGTG---GNGGAGGRAGSGGANGGNGGT 1230 GGDG +GA T+G GG G G G + G+G N GG +GSG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1231 GGTGGDGGKGGGGAVGGSG 1249 G GG+G GGG GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.018 Identities = 28/78 (35%), Positives = 32/78 (41%) Query: 166 GAGGAGGTGGARGGNGGSGGLLFGGGGIGGTGGTGAAGAGMGGMGGNGGSGSWLIGGGGA 225 G G G GA +G G G G GG + GG GSG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 226 GGAGGIGGTGGGTGGVGG 243 G GG G +GGG+G G Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 32.0 bits (72), Expect = 0.020 Identities = 31/97 (31%), Positives = 35/97 (36%) Query: 427 GTNGYIGGNGGNGGAGGAALGGGAAGDGGQGGHGGAGGMGGAGANGITGGGVTGAGGNGG 486 G N GN G LG G G G GG +GI GG +G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 487 DGGQGGEPGTGGAAGSGGGGQTGSLGIGGTGGHGGAG 523 +G GG GTGG + T G GG Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.0 bits (72), Expect = 0.021 Identities = 33/103 (32%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 712 TGGIGGTGADGGAGGNGGAAGGAGGTGGQGGTGGGAGKGGTGGAGGAAVTPGLGIGDEPA 771 +GG G G +G GG G G GG G+G G G GI Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGG--SGSGIHWGGG 59 Query: 772 GGTGGTGGHGGTGGHGGTGGAAGNGGAGGAGGQAGDGGSGGEG 814 G G GG+G +GG GTGG A A G G G Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 31.6 bits (71), Expect = 0.026 Identities = 34/102 (33%), Positives = 38/102 (37%), Gaps = 5/102 (4%) Query: 139 GSGGNGAAGAAGQAGGS--GGSAGLLGNGGAG---GAGGTGGARGGNGGSGGLLFGGGGI 193 G G G A G+ GG GL GGA G GG GSG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 194 GGTGGTGAAGAGMGGMGGNGGSGSWLIGGGGAGGAGGIGGTG 235 G GG G +G G G G + + G A G GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.8 bits (69), Expect = 0.042 Identities = 24/80 (30%), Positives = 28/80 (35%) Query: 1149 NGGNGGNANNGTIEGSPAGGNGSAGGDGGDGGDVASGATGTAGTGGTGGAGNDGTINAGT 1208 +GG+G N G S G G G G SG + G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1209 GGNGGAGGRAGSGGANGGNG 1228 GNGG G +G G GGN Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.045 Identities = 35/104 (33%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 1297 GGGTAGNGGAGGVGGA--GGTGGVGGGGGDGGAGALAGTGGTGGSGGTGGASGAGGSGGG 1354 G G N GA G GG G+G GGG G+ + GG+G GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1355 GGLSGSGQSGANGGTGGASQEGQDGQASTDSDGGAGGAGGTGGS 1398 G G+G SG GTGG A GAGG S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 30.8 bits (69), Expect = 0.049 Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Query: 551 GNGGAGGQGGSNGTGGDGGTGGSGATGGDGGTGGAGTATDAGGTGGQGGVGGAGGAPGAA 610 G G G G++ T G+ G +G G G + G+G +++ GG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG--------- 53 Query: 611 GLAGTGGQAGNEGVGGNGGQGGHGGAGGNGVDGADANVF 649 GG +G+ GGNG GG G GGN A F Sbjct: 54 --IHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.008 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Query: 73 AITESDNAAAEQLWSQLGDPLDAAQQVQAVIGTAGDECTRVE 114 AIT SDN+AA L + +G P + A + GD TR++ Sbjct: 122 AITMSDNSAANLLLATVGGP----AGLTAFLRQIGDNVTRLD 159
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 2e-04 Identities = 32/80 (40%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 1443 GAAGTGGIGGAAGAGGNGNGGAGGTGGVGGGGGDGGTGGSSGKGGDGGTGGTGAVGGMGG 1502 G G G GA GN NGG G GVGGG DG S GG+G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTG-LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1503 AGGSGTGTGTGGTGGDGGDG 1522 G G +GG G GG+ Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 37.4 bits (86), Expect = 4e-04 Identities = 36/120 (30%), Positives = 46/120 (38%) Query: 1116 GSGGDGGAGGIGGVAGAGGQGGNAGAGGNGTGGDGGNGGIGGTGGVGGDAEPGAGGNGGA 1175 G G + GA G G G G G + G G G G G G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1176 GGHGGTGGAAGAGGSGSGSGADGSSGMGGTGGQGGDGGAGSTGANAANGSGATGKAGFAG 1235 GG+G +GG +G GG+ S A + G G G A S A A + + A A G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKG 125 Score = 37.4 bits (86), Expect = 5e-04 Identities = 30/100 (30%), Positives = 34/100 (34%) Query: 1411 GAAGAGGTGGNGGKGGNARLNGNGDGGMGGQGGAAGTGGIGGAAGAGGNGNGGAGGTGGV 1470 G G G G GN G G GG +G G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1471 GGGGGDGGTGGSSGKGGDGGTGGTGAVGGMGGAGGSGTGT 1510 G GGG+G +GG SG GG+ G G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 37.0 bits (85), Expect = 6e-04 Identities = 25/75 (33%), Positives = 27/75 (36%) Query: 1337 GAGGAGGAGGAGGDGIGSTGGGTGGVGGNAGDGGDGGNGSNGGNGNSDGGTGGTGGAAGA 1396 G G GA G+ G G G G + G G N GG S GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1397 GGTGGVGGSGGGDGG 1411 GG G GG G G Sbjct: 66 GGNGNSGGGSGTGGN 80 Score = 36.2 bits (83), Expect = 0.001 Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 1202 MGGTGGQGGDGGAGSTGANAANGSGATGKAGFAGGKGGGGGDGGAGIGGVGGGDGGNGGS 1261 M G G+G + GA ST N G G G A G + GG G G GGS Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1262 GGLGGDGGNGGSGGTNQTGGKGGAGGT 1288 G G GGNG SGG + TGG A Sbjct: 61 GHGNG-GGNGNSGGGSGTGGNLSAVAA 86 Score = 36.2 bits (83), Expect = 0.001 Identities = 33/79 (41%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 1241 GGDGGAGIGGVGGGDGG-NGGSGGLGGDGG-NGGSGGTNQTGGKGGAGGTGGDGGAAGAG 1298 GGDG G G NGG GLG GG + GSG +++ GG G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1299 GAGGGANGSGGTGGTGGTG 1317 G GGG SGG GTGG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 35.8 bits (82), Expect = 0.001 Identities = 27/81 (33%), Positives = 35/81 (43%) Query: 1129 VAGAGGQGGNAGAGGNGTGGDGGNGGIGGTGGVGGDAEPGAGGNGGAGGHGGTGGAAGAG 1188 ++G G+G N GA +GG G+G GG + + N GG G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1189 GSGSGSGADGSSGMGGTGGQG 1209 G G+G G S G GTGG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 0.002 Identities = 24/79 (30%), Positives = 31/79 (39%) Query: 1232 GFAGGKGGGGGDGGAGIGGVGGGDGGNGGSGGLGGDGGNGGSGGTNQTGGKGGAGGTGGD 1291 G G G+ G G+G G G + GSG + GG G+ G G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 1292 GGAAGAGGAGGGANGSGGT 1310 G +G G GG + Sbjct: 68 NGNSGGGSGTGGNLSAVAA 86 Score = 35.1 bits (80), Expect = 0.002 Identities = 28/80 (35%), Positives = 35/80 (43%) Query: 1355 TGGGTGGVGGNAGDGGDGGNGSNGGNGNSDGGTGGTGGAAGAGGTGGVGGSGGGDGGAAG 1414 +GG G A NG G G G + G+G ++ GG GSG GG +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1415 AGGTGGNGGKGGNARLNGNG 1434 G GGNG GG + GN Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 34.3 bits (78), Expect = 0.004 Identities = 25/58 (43%), Positives = 27/58 (46%) Query: 438 NGGTGGAGAGGTDGGGSGGAGGAGGNGGAGGRAPLLFGRGGTGGYGGSGGSGGHGGTG 495 NGG G G GG GSG + GG G G G G GG+G SGG GTG Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Score = 33.9 bits (77), Expect = 0.005 Identities = 27/82 (32%), Positives = 31/82 (37%) Query: 976 GDGGTGGTAGTGGTGSTMGATGTGGTGGVGGSGGTGGHGGHGPLNSDPGGAGGKGGDGGT 1035 G G G G T + TG G G S G+G + P G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1036 GGTGGAGIGTSGGGTGGDGGAA 1057 G GG G G GTGG+ A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 33.9 bits (77), Expect = 0.005 Identities = 31/86 (36%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 1264 LGGDGGNGGSGGTNQTGG--KGGAGGTGGDGGAAGAGGAGGGANGSGGTGGTGGTGGDGG 1321 + G G G + G + T G GG G G GGA+ G N GG G+G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1322 KGGTVTGNGKAGTTGGAGGAGGAGGA 1347 G GNG +G G GG A A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.9 bits (77), Expect = 0.006 Identities = 35/103 (33%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Query: 1316 TGGDGGKGGTVTGNGKAGTTGGAGGAGGAGGAG-GDGIGST----GGGTGGVGGNAGDGG 1370 +GGDG T + GG G G GGA G G S GGG+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1371 DGGNGSNGGNGNSDGGTGGTGGAAGAGGTGGVGGSGGGDGGAA 1413 G G NG +G G G A G S G GG A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.5 bits (76), Expect = 0.007 Identities = 30/102 (29%), Positives = 36/102 (35%) Query: 1370 GDGGNGSNGGNGNSDGGTGGTGGAAGAGGTGGVGGSGGGDGGAAGAGGTGGNGGKGGNAR 1429 G G G N G ++ G G G GG G + G G G GG+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1430 LNGNGDGGMGGQGGAAGTGGIGGAAGAGGNGNGGAGGTGGVG 1471 NG G+G GG G G A A G G GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.011 Identities = 26/81 (32%), Positives = 28/81 (34%) Query: 1403 GGSGGGDGGAAGAGGTGGNGGKGGNARLNGNGDGGMGGQGGAAGTGGIGGAAGAGGNGNG 1462 GG G G A + NGG G G DG GG G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1463 GAGGTGGVGGGGGDGGTGGSS 1483 G GG G GGG G S+ Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 32.8 bits (74), Expect = 0.013 Identities = 33/116 (28%), Positives = 42/116 (36%), Gaps = 1/116 (0%) Query: 1303 GANGSGGTGGTGGTGGDGGKGGTVTGNGKAGTTGGAGGAGGAGGAGGDGIGSTGGGTGGV 1362 G +G G G T G+ G T G G + G + GG G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1363 GGNAGDGGDGGNGSNGGNGNSDGGTGGTG-GAAGAGGTGGVGGSGGGDGGAAGAGG 1417 G G+G GG GGN ++ G A G GG+ S +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 32.8 bits (74), Expect = 0.014 Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 153 AGGSGGLLGNGGNGGAGGIGGGAGGVGGNGGWLYGRGGVGGAGGMGGGTGGAGGHAWLFG 212 +GG G G + +G I GG G+G GG G G GGG+G G W G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG--SGIHWGGG 59 Query: 213 HGGTGGLGGGGGIGAGGAGGNG 234 G G G G G G GGN Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.015 Identities = 34/118 (28%), Positives = 39/118 (33%), Gaps = 4/118 (3%) Query: 431 MHGGAGGNGGTGGAGAGGTDGGGSGGAGGAGGNGGAGG----RAPLLFGRGGTGGYGGSG 486 M GG G TG G GG G G GG G P G G +GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 487 GSGGHGGTGLDGNLAGLGGDGGGGGTGGDGGAPGTGGAGGARHLFSHNGRSGSTGIGG 544 G G GG G G +G GG+ G P G S + + S I Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 32.4 bits (73), Expect = 0.016 Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 3/107 (2%) Query: 1024 GGAGGKGGDGGTGGTGGAGIGTSGGGTGGDGGAAGDGGTGGDGGEVGGTGGVGGAAGTGG 1083 G G G G G+G GG + G G ++ + GG G GG G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH---GN 64 Query: 1084 DGGDGGTGGGDGGKGGTGGTGGTGGIGDPRVGGSGGDGGAGGIGGVA 1130 GG+G +GGG G G G P + G G A I A Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.0 bits (72), Expect = 0.022 Identities = 30/94 (31%), Positives = 36/94 (38%) Query: 137 GNGGNGAAGAAGQAGGAGGSGGLLGNGGNGGAGGIGGGAGGVGGNGGWLYGRGGVGGAGG 196 GN G G G + GSG N GG G G GG G+G GG+G Sbjct: 18 GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77 Query: 197 MGGGTGGAGGHAWLFGHGGTGGLGGGGGIGAGGA 230 G + A A+ F T G GG + GA Sbjct: 78 GGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.0 bits (72), Expect = 0.022 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 1179 GGTGGAAGAGGSGSGSGADGSSGMGGTGGQGGDGGAGSTGANAANGSGATGKAGFAGGKG 1238 GG G G + +G G GG G G+G + N G G+ + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1239 GGGGDGGAGIGGVGGGDGGNGGS 1261 G G G GG G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAV 84 Score = 31.6 bits (71), Expect = 0.027 Identities = 31/108 (28%), Positives = 35/108 (32%) Query: 1083 GDGGDGGTGGGDGGKGGTGGTGGTGGIGDPRVGGSGGDGGAGGIGGVAGAGGQGGNAGAG 1142 G G G G G G G+G GSG GG +G+G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 1143 GNGTGGDGGNGGIGGTGGVGGDAEPGAGGNGGAGGHGGTGGAAGAGGS 1190 GNG G GG G G + A P A G G G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 31.2 bits (70), Expect = 0.040 Identities = 31/93 (33%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 1483 SGKGGDGGTGGTGAVGGMGGAGGSGTGTGTGGTGGDGGDGGDGGDGGGGDGGAIPGTGGG 1542 SG G G G + G G +G G G G + G G + GGG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 1543 DGGSGDTGNLPVGVTGGTGGTGGTAGTAGAGGL 1575 G G GN G GTGG A G Sbjct: 62 HGNGGGNGN--SGGGSGTGGNLSAVAAPVAFGF 92 Score = 31.2 bits (70), Expect = 0.040 Identities = 24/64 (37%), Positives = 30/64 (46%) Query: 397 GTGGLGGAGGAAASTGTAGGVGGDGGAGGRGGLFMHGGAGGNGGTGGAGAGGTDGGGSGG 456 G GLG GGA+ +G + GG G G + G GNGG G GG+ GG+ Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Query: 457 AGGA 460 A A Sbjct: 83 AVAA 86 Score = 30.8 bits (69), Expect = 0.044 Identities = 27/83 (32%), Positives = 33/83 (39%) Query: 220 GGGGGIGAGGAGGNGGLLYGHGGAGAAGGAGQAGGDGGSAGLWGRGGAGGAAGVGGSTGG 279 G G G G +G + G G G GGA G WG G G GGS G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 280 SGGNGGLLIGAGASGGAGTSGGA 302 +GG G G +GG ++ A Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAA 86
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.2 bits (187), Expect = 2e-18 Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 30/267 (11%) Query: 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPAGGGSAAHGVVDEITAA 63 ++G++ +TGA GIG A A A++GA + +D +P VV + A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA------AVDYNP----EKLEKVVSSLKAE 55 Query: 64 GGEAVANGSDVSNWQQAADLISTAVDTFGGLDVLVNNAGIVRDRMMANTSEEEFDAVIAV 123 A A +DV + ++ + G +D+LVN AG++R ++ + S+EE++A +V Sbjct: 56 ARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSV 115 Query: 124 HLKGHFATMRHAASYWRGLSKAGKAVDARIINTSSGAGLQGSVGQANYSAAKAGIAALTL 183 + G F R + Y I+ S A Y+++KA T Sbjct: 116 NSTGVFNASRSVSKYMMDRRSGS------IVTVGSNPAGVPRTSMAAYASSKAAAVMFTK 169 Query: 184 VGAAEMGRYGVTVNAIAPAA-RTRMTETVFAEMMAKPD--EGFDAM-----------APE 229 E+ Y + N ++P + T M +++A+ +G P Sbjct: 170 CLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPS 229 Query: 230 NVSPLVVWLASAEAGAVTGKVFEVEGG 256 +++ V++L S +AG +T V+GG Sbjct: 230 DIADAVLFLVSGQAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.8 bits (243), Expect = 1e-26 Identities = 70/254 (27%), Positives = 106/254 (41%), Gaps = 23/254 (9%) Query: 13 GLAGRVVLVTGGVRGVGAGISSVFAEQGATV------------ITCARRAVENSPHEFHC 60 G+ G++ +TG +G+G ++ A QGA + + + +A F Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 61 CDIRDEDSVKRLMGSIAERHGRLDVLVNNAGGSPYALAAEATPRFHSKIVELNLLAPLLV 120 D+RD ++ + I G +D+LVN AG L + +N Sbjct: 65 -DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 121 SQHAYGLMQEQPTGGSIVNVCSVSGRRPTPGTAAYGAAKAGFESLTSTLAVEWAP-KIRV 179 S+ M ++ GSIV V S P AAY ++KA T L +E A IR Sbjct: 124 SRSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 180 NALVVGMVATE-QSELF---YGDAESIARVAAT----VPLGRLAQPADIGWAAAFLASDL 231 N + G T+ Q L+ G + I T +PL +LA+P+DI A FL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 232 ASYISGATLEVHGG 245 A +I+ L V GG Sbjct: 243 AGHITMHNLCVDGG 256
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 42.6 bits (100), Expect = 5e-06 Identities = 43/132 (32%), Positives = 54/132 (40%), Gaps = 17/132 (12%) Query: 469 GQGVAGIDG-DGGDGGNGGNGSTTDHGVIPQGWGGNGGNGGRGFNGGDGGDGGNGGSGPT 527 G I+G DG D G G+ T G GNG GGDG D G +G Sbjct: 743 ADGDDLIEGNDGNDRLYGDKGNDTLSG----------GNGDDQLYGGDGNDKLIGVAGNN 792 Query: 528 TLRLFGRVGGDGGDG-GRGGDAYGGNAGWGGDGGNGGRGAYGSGLIPPARGGDGGNGGDG 586 L GGDG D G++ N +GG G + G+ G+ L+ G D GG G Sbjct: 793 YL-----NGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYG 847 Query: 587 GDLYINGVMYQH 598 D+Y Y H Sbjct: 848 NDIYRYLSGYGH 859 Score = 35.3 bits (81), Expect = 8e-04 Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 15/121 (12%) Query: 511 FNGGDGGDGGNGGSGPTTLRLFGRVGGDGGDGGRGGDAYGGNAGWGGDGGNGGRGAYGSG 570 F+G DG D G G RL+G G D GG G D +GGDG + G G+ Sbjct: 740 FHGADGDDLIEGNDGND--RLYGDKGNDTLSGGNGDDQL-----YGGDGNDKLIGVAGNN 792 Query: 571 LIPPARGGDGGNGGDGGDLYINGVMYQ--HGGAGFDGLPGEPPDIPPIGGLGGKGGSGGL 628 + +GG+G D + N + GG G D L G GG G GG Sbjct: 793 YL------NGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Query: 629 G 629 G Sbjct: 847 G 847 Score = 34.9 bits (80), Expect = 0.001 Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 6/122 (4%) Query: 440 GGNGGDGGNGGYGNLGGYGGLSGDGSTRAGQGVAGIDG-DGGDGGNGGNGSTTDHGVIPQ 498 G +G D G GN YG G+ + G G + G DG D G G+ +G Sbjct: 742 GADGDDLIEGNDGNDRLYGD-KGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGD 800 Query: 499 G--WGGNGGNGGRGFNGGDGGDGGNGGSGPTTLRLFGRVGGDGGDGGRGGDAYGGNAGWG 556 GG G D G G L G G D GG G D Y +G+G Sbjct: 801 DEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLD--GGEGDDLLKGGYGNDIYRYLSGYG 858 Query: 557 GD 558 Sbjct: 859 HH 860 Score = 31.9 bits (72), Expect = 0.011 Identities = 37/117 (31%), Positives = 39/117 (33%), Gaps = 1/117 (0%) Query: 245 GGDARGIGDGGRGGDGGPGATGAPGGRGSDGGPGGKGGNAGDYGNGGTGGTGGIGGAGGP 304 G I G G D G G G G GGN D GG G IG AG Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN 792 Query: 305 GSPGQSWGDPGSQGGLGGRGGAGGIGGDGGQLSGSGGAGGI-GGEGGHGGAGGDGKD 360 G D G G +L GS GA + GGEG GG G D Sbjct: 793 YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGND 849
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 5e-04 Identities = 35/99 (35%), Positives = 38/99 (38%) Query: 509 GFGGAGGFGGASGFGTGGAGGVGGAGGALFGVGGVGGNGAWGAGGIGGDGGVGGAGSALG 568 G G G SG GG G+G GGA G G N WG G G GG+G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 569 FGLGGAGGAGGASGLGDGGAGGTGGAGGLLGGNGGGGGA 607 G G +GG G G A L G GG A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.0 bits (85), Expect = 5e-04 Identities = 35/99 (35%), Positives = 38/99 (38%) Query: 1191 GFGGAGGFGGASGFGTGGAGGVGGAGGALFGVGGVGGNGAWGAGGIGGDGGVGGAGSALG 1250 G G G SG GG G+G GGA G G N WG G G GG+G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1251 FGLGGAGGAGGASGLGDGGAGGTGGAGGLLGGNGGGGGA 1289 G G +GG G G A L G GG A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.6 bits (84), Expect = 8e-04 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Query: 1356 GSGGAGGIGGAVGTGGTVAGAGGDGGGAGWVGNAGNGGAGGDGW-TNGNGGDGGDGGDVG 1414 G G G GA T G + G G G G + G GW + N GG G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-------GASDGSGWSSENNPWGGGSGSGIH 55 Query: 1415 LFGAGGNGGNGGTGVTAGTGGTGGSG 1440 G G+G GG G + G GTGG+ Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 35.5 bits (81), Expect = 0.002 Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 3/112 (2%) Query: 167 GAGGAGGNTDLFGNNGAVGGAGGAGGWLIGSGGAGGTGGIGAFNGGAGGAGGSAWLFGTG 226 G G G NT +G + G G GGA G + N GG GS +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG---VGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 227 GVGGTGGIGTLGVGGAGGAGGGSGVLSFADGGAGGFGGSGANAGGVGGSGGA 278 G GG GG+G G S V + G GA V S GA Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 35.5 bits (81), Expect = 0.002 Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 3/112 (2%) Query: 849 GAGGAGGNTDLFGNNGAVGGAGGAGGWLIGSGGAGGTGGIGAFNGGAGGAGGSAWLFGTG 908 G G G NT +G + G G GGA G + N GG GS +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG---VGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 909 GVGGTGGIGTLGVGGAGGAGGGSGVLSFADGGAGGFGGSGANAGGVGGSGGA 960 G GG GG+G G S V + G GA V S GA Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 34.3 bits (78), Expect = 0.004 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 568 GFGLGGAGGAGGASGLGDGGAGGTGGAGGLLGGNGGGGGAGGAGAVGFLDNTADGAGGAG 627 G G G GA SG +GG G G GG + G G + G + GG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGG---ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 628 GAGGSGGLLFGDGGVGGAGGAGGISTSSSVNNGGAGGAGGNAGGLFGSGGAGGIGGAV 685 G G GG G+ G G G + ++ V G + AGGL S AG + A+ Sbjct: 61 GHGNGGG--NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Score = 34.3 bits (78), Expect = 0.004 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 5/118 (4%) Query: 1250 GFGLGGAGGAGGASGLGDGGAGGTGGAGGLLGGNGGGGGAGGAGAVGFLDNTADGAGGAG 1309 G G G GA SG +GG G G GG + G G + G + GG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGG---ASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 1310 GAGGSGGLLFGDGGVGGAGGAGGISTSSSVNNGGAGGAGGNAGGLFGSGGAGGIGGAV 1367 G G GG G+ G G G + ++ V G + AGGL S AG + A+ Sbjct: 61 GHGNGGG--NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Score = 34.3 bits (78), Expect = 0.004 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 1340 NNGGAGGAGGNAGGLFGSGGAGGIGGAVGTGGTVAG---AGGDGGGAGWVGNAGNGGAGG 1396 +N GA GN G G GG G + G+G + GG G G W G +G+G GG Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 1397 DGWTNGNGGDGGDGGDV 1413 +G + G G GG+ V Sbjct: 68 NGNSGGGSGTGGNLSAV 84 Score = 33.9 bits (77), Expect = 0.005 Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 350 GVGGIGGTGGTGFSGVGGNAGAGGDGGLLWGSGGAGARGGQGGAGAGGIG-GAGGGGGLF 408 G G G T + GG G G GG GSG + GG GI G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 409 GGDGGAGGVGGTGAGGPGGAGGVGGDAGLFGVGGAGGVG 447 GG+G +GG GTG A V GAGG+ Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.005 Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 1032 GVGGIGGTGGTGFSGVGGNAGAGGDGGLLWGSGGAGARGGQGGAGAGGIG-GAGGGGGLF 1090 G G G T + GG G G GG GSG + GG GI G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 1091 GGDGGAGGVGGTGAGGPGGAGGVGGDAGLFGVGGAGGVG 1129 GG+G +GG GTG A V GAGG+ Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.005 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 658 NNGGAGGAGGNAGGLFGSGGAGGIGGAVGTGGTVAG---AGGDGGGAGWVGNAGNGGAGG 714 +N GA GN G G GG G + G+G + GG G G W G +G+G GG Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 715 DGWTNGNGGDGGDG 728 +G + G G GG+ Sbjct: 68 NGNSGGGSGTGGNL 81 Score = 33.5 bits (76), Expect = 0.007 Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 674 GSGGAGGIGGAVGTGGTVAGAGGDGGGAGWVGNAGNGGAGGDGWTNGNGGDGGDGGDAV- 732 G G G GA T G + G G G G + G GW++ N GG G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-------GASDGSGWSSENNPWGGGSGSGIH 55 Query: 733 LVGNGGNGGNGGTGLVAGSTGTGG 756 G G+G GG G G +GTGG Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGG 79 Score = 33.5 bits (76), Expect = 0.007 Identities = 36/104 (34%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 476 GLGGNGGTGGFSGPLSAGAGGGDGGAGGGVGLIGFGGAGGFGGASGFGTGGAGGVGGAGG 535 G G N G SG ++ G G G G G +GG SG G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH--- 62 Query: 536 ALFGVGGVGGNGAWGAGGIGGDGGVGGAGSALGFGLGGAGGAGG 579 G GG GN G+G GG+ A A GF GAGG Sbjct: 63 ---GNGGGNGNSGGGSGT-GGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.5 bits (76), Expect = 0.007 Identities = 36/104 (34%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 1158 GLGGNGGTGGFSGPLSAGAGGGDGGAGGGVGLIGFGGAGGFGGASGFGTGGAGGVGGAGG 1217 G G N G SG ++ G G G G G +GG SG G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH--- 62 Query: 1218 ALFGVGGVGGNGAWGAGGIGGDGGVGGAGSALGFGLGGAGGAGG 1261 G GG GN G+G GG+ A A GF GAGG Sbjct: 63 ---GNGGGNGNSGGGSGT-GGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.8 bits (74), Expect = 0.013 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 621 DGAGGAGGAGGSGGLLFG-DGGVGGAGGAGGISTSSSVNNGGAGGAGGNAGGLFGSGGAG 679 DG G GA + G + G G+G GGA S SS NN GG+G GSG Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 680 GIGGAVGTGGTVAGAGGDGGGA 701 G G GG+ G A Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.8 bits (74), Expect = 0.013 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 1303 DGAGGAGGAGGSGGLLFG-DGGVGGAGGAGGISTSSSVNNGGAGGAGGNAGGLFGSGGAG 1361 DG G GA + G + G G+G GGA S SS NN GG+G GSG Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 1362 GIGGAVGTGGTVAGAGGDGGGA 1383 G G GG+ G A Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.016 Identities = 34/100 (34%), Positives = 38/100 (38%), Gaps = 3/100 (3%) Query: 120 NGANGAPGTGQNGGDGGLLFGNGGAGGSGADGQNGGAGGNAGFFGSGGAGGAGGNTDLFG 179 N + NGG GL G G + GSG +N GG +G G G GN G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG---G 66 Query: 180 NNGAVGGAGGAGGWLIGSGGAGGTGGIGAFNGGAGGAGGS 219 NG GG G GG L G GAGG S Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 32.0 bits (72), Expect = 0.021 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 215 GAGGSAWLFGTGGVGGTGGIGTLGVGGAGGAGGGSGVLSFADGGAGGFGGSGANAGGVGG 274 G G G G G G+G GGA GSG S + GG GSG + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSG 61 Query: 275 SGGAAGIFGTGGAGGTGGAG 294 G G +GG GTGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 32.0 bits (72), Expect = 0.021 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 897 GAGGSAWLFGTGGVGGTGGIGTLGVGGAGGAGGGSGVLSFADGGAGGFGGSGANAGGVGG 956 G G G G G G+G GGA GSG S + GG GSG + GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSG 61 Query: 957 SGGAAGIFGTGGAGGTGGAG 976 G G +GG GTGG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.048 Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Query: 802 NGTPGAAGSGADGTAGGWLLGNGGAGGSGADGQNGGAGGNAGFFGSGGAGGAGGNTDLFG 861 N + +G G +G G + GSG +N GG +G G G GN G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG---G 66 Query: 862 NNGAVGGAGGAGGWLIGSGGAGGTGGIGAFNGGAGGAGGS 901 NG GG G GG L G GAGG S Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 244 bits (624), Expect = 2e-81 Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 28/333 (8%) Query: 1 MRALVTGAAGFIGSTLVDRLLADGHTVVGLDNFATGRATNLEH----LVDNLAHVFVEAD 56 M+ LVTGAAGFIG + RLL GH VVG+DN +L+ L+ F + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 IVDAD-LQAIFEQHRPEVIFHLAAQIDVRHSVADPQFDASVNVIGTLRLAEAARLTGVRK 115 + D + + +F E +F ++ VR+S+ +P A N+ G L + E R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 116 VVHTSSGGSIYGTPPQYPTSERVPTD-PASPYAAGKVAGEIYLNTFRHLYGLECSHIAPA 174 +++ SS S+YG + P S D P S YAA K A E+ +T+ HLYGL + + Sbjct: 121 LLYASS-SSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 175 NVYGPRQDPHGEAGVVAIFAQALLSGKPTKVFGDGTNTRDYVFVDDVVDAFVRA------ 228 VYGP P + F +A+L GK V+ G RD+ ++DD+ +A +R Sbjct: 180 TVYGPWGRPD---MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 229 ------------GSDVGGGQRFNIGTGVETSDRQLHSAVAAAVGGPDDPEFHPPRLGDLK 276 + + + +NIG A+ A+G P + GD+ Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVL 296 Query: 277 RSCLDISRAEEVLGWRPQVELADGVRRTVDYFR 309 + D EV+G+ P+ + DGV+ V+++R Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 2e-04 Identities = 25/81 (30%), Positives = 36/81 (44%) Query: 424 AGVGGIGGDGGDATAASSATGGHGGDGGDSDPSVGTGGNGGTGGNGGNGGAASLLFGNGG 483 +G G G + G + + + GG G G S G+G + GG G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 484 SGGDGGVGGTGGTGGAGGSGA 504 G GG G +GG G GG+ + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLS 82 Score = 35.8 bits (82), Expect = 6e-04 Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 267 LTGGNGDTGDTGGTGETGGTGGAGGSATASSGSATGGKGGAGGDPGGGANGGAGGAGGDA 326 ++GG+G +TG +G G G++ G + +P GG +G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG-- 58 Query: 327 ESFSGQAHGGAGGDGSQGGIPGGSGGAGGDGGKATGLASGIGGDGGDGGRGFATDVSGG 385 G HG GG+G+ GG GSG G A +A G G G A +S G Sbjct: 59 ----GSGHGNGGGNGNSGG---GSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 35.1 bits (80), Expect = 9e-04 Identities = 28/111 (25%), Positives = 32/111 (28%) Query: 404 GSGGNGGTGGTGGTGGTGAAAGVGGIGGDGGDATAASSATGGHGGDGGDSDPSVGTGGNG 463 G G G G T G G G G + S+ G G S G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 464 GTGGNGGNGGAASLLFGNGGSGGDGGVGGTGGTGGAGGSGAGGGVGGDGSS 514 G GG GN G S GN + G G G + S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALS 113 Score = 35.1 bits (80), Expect = 0.001 Identities = 32/93 (34%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Query: 499 AGGSGAGGGVGGDGSSRGGIGGNGGSGANSMAIGGEGGVGGRGGDAGTSGLLIGNGGDGG 558 +GG G G G +S GG G G A G G G SG I GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 559 SGGAGGTGGTGGAGGAGAAGGAGGNGSTQIAFG 591 G GG G +GG G GG + +AFG Sbjct: 62 HGNGGGNGNSGGGSG---TGGNLSAVAAPVAFG 91 Score = 33.9 bits (77), Expect = 0.002 Identities = 30/95 (31%), Positives = 36/95 (37%) Query: 553 NGGDGGSGGAGGTGGTGGAGGAGAAGGAGGNGSTQIAFGGDGGNGGDGGDGAQGGEGGAT 612 N G + G G TG G GA+ G+G + GG G GG G GG Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 613 GSVGGIGSQGGILFSHAGADGSTGAPGAGGAGGAG 647 S GG G+ G + A A GAGG Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.005 Identities = 24/76 (31%), Positives = 30/76 (39%) Query: 249 TGTAGTGAAGGNVSGNGPLTGGNGDTGDTGGTGETGGTGGAGGSATASSGSATGGKGGAG 308 +G G G G S +G + GG G GG + G SGS GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 309 GDPGGGANGGAGGAGG 324 GGG GG+G Sbjct: 62 HGNGGGNGNSGGGSGT 77 Score = 32.4 bits (73), Expect = 0.006 Identities = 27/102 (26%), Positives = 38/102 (37%) Query: 238 LAGADGVNPTPTGTAGTGAAGGNVSGNGPLTGGNGDTGDTGGTGETGGTGGAGGSATASS 297 ++G DG + +G G +G G G + +G + GG G+G S Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 298 GSATGGKGGAGGDPGGGANGGAGGAGGDAESFSGQAHGGAGG 339 G GG G G G + A A F + GAGG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.4 bits (73), Expect = 0.007 Identities = 34/115 (29%), Positives = 40/115 (34%) Query: 226 GDGGTGGQGGTGLAGADGVNPTPTGTAGTGAAGGNVSGNGPLTGGNGDTGDTGGTGETGG 285 GDG G +G PT G G + G S GG +G G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 286 TGGAGGSATASSGSATGGKGGAGGDPGGGANGGAGGAGGDAESFSGQAHGGAGGD 340 GG G++ SG+ A G GAGG A S S A A D Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 32.0 bits (72), Expect = 0.009 Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 7/96 (7%) Query: 349 GSGGAGGDGGKATGLASGIGGDGGDGGRGFATDVSGGTAGGGGTGGDGGRGGLLIGSGGN 408 G G G + G + + GG G G G A+D SG ++ GG G G I GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG---IHWGGG 59 Query: 409 GGTGGTGGTGGTGAAAGVGGIGGDGGDATAASSATG 444 G G GG G +G +G GG A AA A G Sbjct: 60 SGHGNGGGNGNSGGGSGTGG----NLSAVAAPVAFG 91 Score = 31.6 bits (71), Expect = 0.012 Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 480 GNGGSGGDGGVGGTGGTGGAGGSGAGGGVGG-DGSSRGGIGGNGGSGANSMAIGGEGGVG 538 G G G + G T G G +G G G G DGS G G+ S G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 539 GRGGDAGTSGLLIGNGGDGGSGGAGGTGGTGGAGGAGAAGGA 580 G GG G SG G GG+ + A G GA G A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.017 Identities = 36/99 (36%), Positives = 42/99 (42%), Gaps = 9/99 (9%) Query: 481 NGGSGGDGGVGGTGGTGGAGGSGAGGGVGGDGSSRGGIGGNGGSGANSMAIGGEGGVGGR 540 +GG G G +G G G GVGG S G+G S N+ GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASD-----GSGWSSENNPWGGGSGSGIHW 56 Query: 541 GGDAGTSGLLIGNGGDGGSGGAGGTGGTGGAGGAGAAGG 579 GG +G GG+G SGG GTGG A A A G Sbjct: 57 GGGSGHG----NGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 31.2 bits (70), Expect = 0.017 Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Query: 150 GSGAPGQNGGAGGNAGLLGSGGTGGVGGAGATGGTG-GTGGLLWGNG-----GIGGQGGT 203 G G N GA +G + G TG G GA+ G+G + WG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 204 AMAGVNGGSPGHGGNGGN 221 G NG S G G GGN Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 30.8 bits (69), Expect = 0.020 Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 2/92 (2%) Query: 441 SATGGHGGDGGDSDPSVGTGGNGGTGGNGGNGGAASLLFGNGGSGGDGGVGGTGGTGGAG 500 S G G + G S G G GG S G G G GG+G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 501 GSGAGGGVGGDGSSRGGIGGNGGSGANSMAIG 532 GG G S G GGN + A +A G Sbjct: 62 HGNGGGNGNSGGGS--GTGGNLSAVAAPVAFG 91 Score = 30.8 bits (69), Expect = 0.020 Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 2/114 (1%) Query: 538 GGRGGDAGTSGLLIGNGGDGGSGGAGGTGGTGGAGGAGAAGGAGGNGS-TQIAFGGDGGN 596 GG G T +GG G G GG G + G GS + I +GG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 597 GGDGGDGAQGGEGGATGSVGGIGSQGGILFSHAGADGSTGAPGAGGAGGAGGAA 650 G GG+G GG G G++ + + F G+ G + GA AA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGA-GGLAVSISAGALSAA 115 Score = 30.8 bits (69), Expect = 0.022 Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 1/103 (0%) Query: 577 AGGAGGNGSTQIAFGGDGGNGGDGGDGAQGGEGGATGSVGGIGSQGGILFSHAGADGSTG 636 +GG G +T NGG G G GG +G GG S G +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 637 APGAGGAGGAGGAAGGFGAGGSGATAGADGKAGTAGTAGATGP 679 GG G +GG +G G + A A G + T GA G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS-TPGAGGL 103 Score = 30.1 bits (67), Expect = 0.038 Identities = 29/85 (34%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 315 ANGGAGGAGGDAESFSGQAHGGAGGDGSQGGIPGGSGGAGGDGGKATGLASGIGGDGGDG 374 + G G A S SG +GG G G GG GSG + + G SGI GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 375 GRGFATDVSGGTAGGGGTGGDGGRG 399 GG GG G GG Sbjct: 62 HGN-----GGGNGNSGGGSGTGGNL 81 Score = 29.7 bits (66), Expect = 0.045 Identities = 23/84 (27%), Positives = 28/84 (33%) Query: 123 GNGADGAPGSGANGADGGILIGNGGTGGSGAPGQNGGAGGNAGLLGSGGTGGVGGAGATG 182 G G + S + +GG G G S G + G GSG G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 183 GTGGTGGLLWGNGGIGGQGGTAMA 206 G G G G GG +A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVA 89
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 44.5 bits (105), Expect = 1e-06 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 18/119 (15%) Query: 4 IATAGHVDHGKSTLVHRLT---------------DMWPDRLAEEQRRGLTIDLGFAWTEL 48 I HVD GK+TL L D E++RG+TI G + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 49 DGRQLAFVDVPGHERFVTNMLAGSGAMPPDSPVLFVVAATEGWMPQSEEHLAALDALRV 107 + ++ +D PGH F+ + + D +L +++A +G Q+ AL + + Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYRSLSVL--DGAIL-LISAKDGVQAQTRILFHALRKMGI 121
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 155 bits (392), Expect = 3e-43 Identities = 85/422 (20%), Positives = 176/422 (41%), Gaps = 25/422 (5%) Query: 19 HQGLVLAVTCLALGTVVAAMASLNVALPDIARQTHADQTQQAWIVDAYSLVFASLLLPAG 78 H +++ + L+ +V+ M LNV+LPDIA + W+ A+ L F+ G Sbjct: 12 HNQILIWLCILSFFSVLNEMV-LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 79 AVGDRYGRRLALLVGLVVFGAGSGVATLT-TDPTALAGLRALLGVGAALIMPATLSTITS 137 + D+ G + LL G+++ GS + + + + L R + G GAA PA + + + Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAF-PALVMVVVA 129 Query: 138 SF-PAQRRAAAVSIWTAVAGASGVVGLLASGLLLQWWSWQSIFWLNVLLAAVALTGTLLF 196 + P + R A + ++ VG G++ + W + L + + + L+ Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMK 187 Query: 197 VPESAERDPAPLDVVGAVLAAAGIAVLVYAVIEAPAYGWTDPVTVGGIAVGLLILAGFVV 256 + + R D+ G +L + GI + +Y + + + +L+ + Sbjct: 188 LLKKEVRIKGHFDIKGIILMSVGIVFFMLFT---TSYSISFLI--------VSVLSFLIF 236 Query: 257 IEMGRR--YPLLDPRLFTNRRFAAGSLSITLQFFALFGFLFVIMQYLQSVRHYSALTAAL 314 ++ R+ P +DP L N F G L + F + GF+ ++ ++ V S TA + Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLS--TAEI 294 Query: 315 GLLAMPIGM---IPSSRLSPYLTERFGIRLPWVAGLLIVAEGLMVLAHLDSADPYWHIAS 371 G + + G I + L +R G G+ ++ + + L ++ + Sbjct: 295 GSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWF-MTI 353 Query: 372 GLIPLGAGLGLAMPPATTAITGALPSRLQNVGSAVNDLARELGGALGIAVLGSLLTATYR 431 ++ + GL +T ++ +L + G ++ + L GIA++G LL+ Sbjct: 354 IIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLL 413 Query: 432 NH 433 + Sbjct: 414 DQ 415
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.9 bits (168), Expect = 2e-16 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 16/177 (9%) Query: 6 ARGRRAGKPDTRAKILEVARRRFLEGGYQGVKLRSVAAEAGVDLALISYYFGSKRGLVGE 65 AR + +TR IL+VA R F + G L +A AGV I ++F K L E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 66 ALALSANPADVLDQAVAKGDPATFPQRVLAGLLALWEDPASGASLRALV------AGAAH 119 LS + L+ P + L+ + E + R L+ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 120 DPALANRVKEMVERELIDKIAAQL----------SGTDARKRASMFCSQIAGLIVTR 166 + A+ + + + E D+I L + R+ A + I+GL+ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENW 178
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 38.6 bits (89), Expect = 4e-05 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%) Query: 237 LAGLVVVILVGVAAAANGATAALLGFPLVLLVGLLVAYLYTVLMFA-----PVL-IVLER 290 L L+ ++ V A GA+ AL L ++V + T + F P++ VL+ Sbjct: 321 LGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEHVLK- 379 Query: 291 LPLVDAITRSFALVTGGFWRVLGIRLLTAIVVGLVGGAISAPFGIVGQILLGATASEGST 350 PL++ I ++ G LG+ TA + G + GAI A +V I++ A +G+ Sbjct: 380 -PLMELIGKAITKALEG----LGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAA 434 Query: 351 GMFLVGMTLSSIGSAISQII 370 + +G+A+S+++ Sbjct: 435 ---------AKLGNALSKMM 445
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.0 bits (83), Expect = 2e-04 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 117 DEINRTPPKTQAALLEAMEERQVSVEGQAKPLP-DPFIVAATQNPIE 162 DEI P Q LL +++ + + G P+ D IVAAT ++ Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLK 284
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.2 bits (70), Expect = 0.005 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 242 ARLRPAGAGAPPGWPPQTPPAPVWWPGQPAPQPQIQPQFAPD-PAPSPPQG 291 A+ PA AP P P P PQP PQ P+ PAP PP G Sbjct: 565 AKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAG 615 Score = 30.1 bits (67), Expect = 0.014 Identities = 17/45 (37%), Positives = 18/45 (40%) Query: 248 GAGAPPGWPPQTPPAPVWWPGQPAPQPQIQPQFAPDPAPSPPQGP 292 GA APP P P P P P P QP P P P+ P Sbjct: 564 GAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAP 608
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.023 Identities = 15/37 (40%), Positives = 16/37 (43%) Query: 55 PLGFGGGFGPGFGPGLGFGFGPGGARGGGRRGGPGRG 91 P G G G G +G G G G G G GG G G Sbjct: 45 PWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 9e-05 Identities = 41/108 (37%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 571 GGGGSGGGGGASGGTGG-TGGAGGLLSAGGAGGVGGAGFNDGGDGGAGGSGGLLGGLVGA 629 GG G G GA +G GG GL GGA G + GG GSG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 630 GGGAGGNGGAGFGGTPGNGGAGGDAGLLGGPG-GTGGAGGYNTSGPGG 676 G G G G GT GN A G P T GAGG S G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 37.8 bits (87), Expect = 2e-04 Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 6/110 (5%) Query: 657 LGGPGGTGGAGGYNTSGPGGNGGSGGNAGTLFGSGGGGGNGGSGYSGIGGTGGTGGSAGL 716 + G G G G +++ NGG G GGG + GSG+S G G +G+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTG------LGVGGGASDGSGWSSENNPWGGGSGSGI 54 Query: 717 VFSDAGAGGFGGFGSTAGGTGGTGGNAVLLGGGGAGGAGGISFTGAGGQG 766 + G GG +GG GTGGN + A G +S GAGG Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.4 bits (86), Expect = 2e-04 Identities = 35/115 (30%), Positives = 42/115 (36%) Query: 513 AGGSGAANTGASGGAGGAAGLLGTGGTGGAGARLAGGAGGTGGAGGAGGWLLGDGGGGGG 572 +GG G + + G TG G GA G G G GGG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 573 GGSGGGGGASGGTGGTGGAGGLLSAGGAGGVGGAGFNDGGDGGAGGSGGLLGGLV 627 G+GGG G SGG GTGG ++A A G G S G L + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Score = 37.4 bits (86), Expect = 3e-04 Identities = 36/109 (33%), Positives = 43/109 (39%), Gaps = 2/109 (1%) Query: 125 NGGAGGSGAAGSAGGAGGAAGLIGAGGAGGAGGSSTGGAGGTGGAGGAGGWLFGPGGVGG 184 N GA + + G G G + G+G + ++ G G G GG G GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 185 AGGSSSSAGGAGGVGGAGGLFGGGGLG--GAGGAGVSASGGAGGAGGAG 231 G S GG A FG L GAGG VS S GA A A Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 37.4 bits (86), Expect = 3e-04 Identities = 43/124 (34%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 152 AGGAGGSSTGGAGGTGGAGGAGGWLFGPGGVGGAGGSSSSAGGAGGVGGAGGLFGGGGLG 211 +GG G GA T G G G GG G SS G G G+ GGG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 212 GAGGAGVSASGGAGGAGGAGGALAGFLGAGG---GDGGAGGSGVNHEGGAGGAGGAGGLI 268 G G SGG G GG A+A + G GAGG V+ GA A A + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Query: 269 AGTG 272 A G Sbjct: 122 ALKG 125 Score = 37.0 bits (85), Expect = 3e-04 Identities = 27/80 (33%), Positives = 31/80 (38%) Query: 747 GGGGAGGAGGISFTGAGGQGGAGGTGGQLSGNGGSGGTGGEGDYVGGADSGGAGGTGGNA 806 GG G G G T GG G G + GSG + + GG+ SG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 807 GLTGDGGNGGNGGSGGTPGS 826 G G GN G G G S Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 37.0 bits (85), Expect = 4e-04 Identities = 24/71 (33%), Positives = 33/71 (46%) Query: 614 GGAGGSGGLLGGLVGAGGGAGGNGGAGFGGTPGNGGAGGDAGLLGGPGGTGGAGGYNTSG 673 G SG + GG G G G G + G+G+ G G +G+ G G G GG N + Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 674 PGGNGGSGGNA 684 GG+G G + Sbjct: 72 GGGSGTGGNLS 82 Score = 35.8 bits (82), Expect = 7e-04 Identities = 28/76 (36%), Positives = 32/76 (42%) Query: 761 GAGGQGGAGGTGGQLSGNGGSGGTGGEGDYVGGADSGGAGGTGGNAGLTGDGGNGGNGGS 820 G G GA T G ++G G GG G S GG+ GG G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 821 GGTPGSPGGGGTGGAL 836 GG S GG GTGG L Sbjct: 66 GGNGNSGGGSGTGGNL 81 Score = 35.1 bits (80), Expect = 0.001 Identities = 41/125 (32%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 630 GGGAGGNGGAGFGGTPGNGGAGGDAGLLGGPGGTGGAGGYNTSGPGGNGGSGGNAGTLFG 689 G G G N GA NGG G G GG G +S GG G+ G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTG-----LGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 690 SGGGGGNGGSGYSGIGGTGGTGGSAGLVFSDAGAGGFGGFGSTAGGTGGTGGNAVLLGGG 749 G G GG+G SG G G SA FG A T G GG AV + G Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSA--------VAAPVAFGFPALSTPGAGGLAVSISAG 110 Query: 750 GAGGA 754 A Sbjct: 111 ALSAA 115 Score = 34.3 bits (78), Expect = 0.002 Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 549 GAGGTGGAGGAGGWLLGDGGGGGGGGSGGGGGASGGT----GGTGGAGGLLSAGGAGGVG 604 G G GA G + G G G GG G GG G+G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 605 GAGFNDGGDGGAGGSGGLLGGLVGAGGGAGGNGGAGFGGTPGNGGA 650 G N GG G GG+ + V G A GAG + GA Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.9 bits (77), Expect = 0.003 Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 2/104 (1%) Query: 578 GGGASGGTGGTGGAGGLLSAGGAGGVGGAGFNDGGDGGAGGSGGLLGGLVGAGGGAGGNG 637 GG G G G ++ G G G G +DG G GG G+G GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGGS 60 Query: 638 GAGFGGTPGNGGAGGDAGLLGGPGGTGGAGGYNTSGPGGNGGSG 681 G G GG GN G G G A G+ G GG Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 32.8 bits (74), Expect = 0.007 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 3/112 (2%) Query: 242 GGDGGAGGSGVNHEGGAGGAGGAGGLIAGTGGNGGAGGTDAYSRGGAGGAGGDAGLLFGS 301 GGDG +G + G G G + G +G ++ GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG---GG 59 Query: 302 GGAGGTGGTGGTDMSDSGGTGGAGGNAGLLFGSGGAGGAGGAAVALNDVGGA 353 G G GG G + G + A + FG G +A++ GA Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 32.4 bits (73), Expect = 0.008 Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 206 GGGGLGGAGGAGVSASGGAGGAGGAGGALAGFLGAGGGDGGAGGSGVN-HEGGAGGAGGA 264 G G GA + +GG G G GGA G + + GGSG H GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 265 GGLIAGTGGNGGAGGTDAYSRGGAGG 290 GG GG+G G A + A G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 30.8 bits (69), Expect = 0.026 Identities = 35/115 (30%), Positives = 41/115 (35%), Gaps = 6/115 (5%) Query: 310 TGGTDMSDSGGTGGAGGNAGLLFGSGGAGGAGGAAVALNDVGGAGGAGGNAGLFGNGGVG 369 +GG + G GN G G G GGA +D G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNIN--GGPTGLGVGGGA----SDGSGWSSENNPWGGGSGSGIH 55 Query: 370 GVGGVGAGDGGAGGRAGLVIGNGGAGGAGGESFGFGAGVGGAGGNGGNGVLIGNG 424 GG G G+GG G +G G GG A FG G GG V I G Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 30.1 bits (67), Expect = 0.047 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 489 NGTPGAAGSGTDGTPGGWLLGDGGAGGSGAANTGASGGAGGAAGLLGTGGTGGAGARLAG 548 N + +G P G +G G + GSG ++ G G +G+ GG+G G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG---G 66 Query: 549 GAGGTGGAGGAGG 561 G G +GG G GG Sbjct: 67 GNGNSGGGSGTGG 79
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.6 bits (129), Expect = 3e-10 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 9/126 (7%) Query: 6 MHVLVTGGTGFVGGWTAKAIADAGHSVRFL-----VRNPAKLESSVAKLGVDVSDFIIGD 60 M LVTG GF+G +K + +AGH V + + + ++ + L F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 61 IKDRDLVRE--ALTGCDAVVHSAAL--VATDQRQTQDMLSTNMEGARNVLGQAVALGLDP 116 + DR+ + + A + V S V +N+ G N+L + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 117 IVHVSS 122 +++ SS Sbjct: 121 LLYASS 126
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.016 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 232 LVGRGWEVAAVSTMLDRAIHGRGSVVGVTGPVGIGKSRLVREAIGL 277 LVG+ + V+ +++ SVV + G GIGKS L+ +GL Sbjct: 575 LVGKYILMGHVARVMEPGCKFDYSVV-LEGTGGIGKSTLINTLVGL 619
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 38.1 bits (88), Expect = 1e-04 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 933 CTEIERTVAAAIGQVLGIAQVSRDDGFLALGGDSVSAMRLAARVRAEGLPLTPELLFEHA 992 C I + +A + ++ + L G DSV M L + R EG +T L E Sbjct: 232 CENIRKQIAELLQ--ETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERP 289 Query: 993 TVRQIAAALQEAANQ 1007 T+ + L + Q Sbjct: 290 TIEEWQKLLTTRSQQ 304
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 39.3 bits (91), Expect = 1e-04 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 11/164 (6%) Query: 2009 VLITGGTGMAGGVLARHVVGAGGVRHVVLASRQGEQAPGVAELVSELSAAGAEVLVLACD 2068 ITG G +AR + G H+ E+ + ++VS L A D Sbjct: 11 AFITGAAQGIGEAVARTLASQGA--HIAAVDYNPEK---LEKVVSSLKAEARHAEAFPAD 65 Query: 2069 VADRDAVAQMMEQVRRRCPPLTGVIHAAGVLDDTVIASLTPDRMNPVLRAKVDGAWHLHQ 2128 V D A+ ++ ++ R P+ +++ AGVL +I SL+ + G ++ + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 2129 -----LTRGLGLSMFVLCSSIAGVMGSPGQGNYAAANTFLDALA 2167 + S+ + S+ AGV YA++ Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGV-PRTSMAAYASSKAAAVMFT 168
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 42.3 bits (99), Expect = 1e-05 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 11/164 (6%) Query: 1738 VLITGGTGLVGSVLARHLVSAYGVRNLVLVSRMGEQGAGVAELVDELSDAGARVLVAACD 1797 ITG +G +AR L S G ++ + + ++V L D Sbjct: 11 AFITGAAQGIGEAVARTLASQ-GAH----IAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 1798 VADQSAVEKLIAGWGREYPALTGVIHAAGVLDDAVITSMTPDQVDSVLRAKVDGAWNLHH 1857 V D +A++++ A RE + +++ AGVL +I S++ ++ ++ G +N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 1858 AT-----RGLGLSMFVLCSSIAGVVGAPGQGNYAAANAFLDALV 1896 + S+ + S+ AGV YA++ A Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRT-SMAAYASSKAAAVMFT 168
>PF06580#Sensor histidine kinase Length = 349 Score = 28.3 bits (63), Expect = 0.003 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 10 LARIH--AKRSFWWHLGAYILGNAALVAIWFFTSGGYFWPIWPALGWGIGLVFHGLGVFL 67 +A H A + +W+ +G F + Y P ++ + I + GL + Sbjct: 1 MASTHRQANKYYWY---CQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTH 57 Query: 68 GMR 70 R Sbjct: 58 AYR 60
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 6e-09 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 10/118 (8%) Query: 11 ADGRQLRYQHRRGEIFDAVMAHVLEHGITGLSFRTLAAAVGVSHVTLRHHFGTKDQLLVE 70 A + Q R I D + + G++ S +A A GV+ + HF K L E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 71 ILGAIGTRIV-IPEQLGADDVEALWRRWNEPGAQRRSQLLFEAYAQAVRHPDEYRGFL 127 I + I + + A E + ++ + R + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLRE---------ILIHVLESTVTEERRRLLM 110
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 78.1 bits (192), Expect = 5e-20 Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 11/210 (5%) Query: 1 MGARGEQTRQRIITAAMRCVAEAGPAQASIREIAKAADMTSGSLYHYFPNKSELLNATAT 60 ++TRQ I+ A+R ++ G + S+ EIAKAA +T G++Y +F +KS+L + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 EIEEIVLPRLHA-AAASSDDIVDRLDAVLDESKRLMRDYPYLAGFLRAVRAENADQTG-- 117 E + A D + L +L + + + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 118 ---GGRRTYPGSKALRDVITEIVDDARGRGVLSAGIAPGAAVDAICALTRGLTEQAANLG 174 +R D I + + +L A + A + GL E Sbjct: 125 VVQQAQRNLCL--ESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF-- 180 Query: 175 PQSYDVTLDSAKQLLRGSLFAGAKPTATHR 204 L + L T R Sbjct: 181 -APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.3 bits (182), Expect = 1e-18 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 2/177 (1%) Query: 6 LGRPVGASGEETRQRIIVATMQCVSKVGYARATIREIARTANVTSASLYNYFPNKSELIK 65 + R +ETRQ I+ ++ S+ G + ++ EIA+ A VT ++Y +F +KS+L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 66 ETIAARADAAMPRLR-RAAEGGGNIVDRIEAVLDECGELIREYPQLAAFEFAIRAEDGIA 124 E A+ G+ + + +L E + I + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC-EF 119 Query: 125 LDAQEGSGQLGEVGFTAFREIIRGLVEDARRRGELAEQADTAGAIEAIYALIYGLTE 181 + Q + I ++ L T A + I GL E Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 31.1 bits (70), Expect = 0.011 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 9/64 (14%) Query: 465 TQCQSYFRSPSGRIVT-QWPYTELEYARRTWR--IKPRDWLHHKGVSPAAQRGGAGSAAS 521 T+CQ + R + T Q + L A + W IKP DWL H VSPA AG+A S Sbjct: 20 TECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWLEH--VSPAL----AGAAVS 73 Query: 522 AQTE 525 A E Sbjct: 74 AGAE 77
>cloacin#Cloacin signature. Length = 551 Score = 45.1 bits (106), Expect = 6e-07 Identities = 27/82 (32%), Positives = 33/82 (40%) Query: 144 GNGGDGGSGAAGQVGGNGGNAGLIGTGGAGGQGGSGVSTTSAQAGGRGGSGGLLFGNGGL 203 G G G + A GN G G GSG S+ + GG GSG G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 204 GGQGGSGGTSGTGGPGGPGGSA 225 G GG+G + G G GG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAV 84 Score = 42.8 bits (100), Expect = 3e-06 Identities = 30/80 (37%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 178 SGVSTTSAQAGGRGGSGGLLFGNGGLGGQGGSGGTSGTGGPGGP--GGSAQGIGDGGNGG 235 SG G SG + G GLG GG+ SG P GGS GI GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 236 SGGSGVDPGAGGAAGNGGRL 255 G G + +GG +G GG L Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81 Score = 34.7 bits (79), Expect = 0.001 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 135 DGGPGGLLYGNGGDGGSGAAGQVGGNGGNAGL-IGTGGAGGQGGSGVSTTSAQAGGRGGS 193 +GGP GL G G GSG + + GG +G I GG G G G + S G GG+ Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 194 G 194 Sbjct: 81 L 81 Score = 31.2 bits (70), Expect = 0.011 Identities = 21/71 (29%), Positives = 29/71 (40%) Query: 117 TGRQLIGDGADGAPGTGRDGGPGGLLYGNGGDGGSGAAGQVGGNGGNAGLIGTGGAGGQG 176 T + G G G G G N GGSG+ GG G+ G G +GG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGS 75 Query: 177 GSGVSTTSAQA 187 G+G + ++ A Sbjct: 76 GTGGNLSAVAA 86
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 46.6 bits (110), Expect = 3e-08 Identities = 62/278 (22%), Positives = 103/278 (37%), Gaps = 49/278 (17%) Query: 3 RDVLTVIGVGGMGQAIARRLGS-GKTVLLADNNADTLASVSETLAAEGHDVKSRGVDVCA 61 + G+G+A+AR L S G + D N + L V +L AE ++ DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 62 AESVHDL-AQYAATLGAVTQLAHTAGL-------SPAQASAQAILAVDLLGVALVLQEFG 113 + ++ ++ A+ +G + L + AG+ S + +A +V+ GV + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 114 AVIAP--GGAGVIIASMAGHLLPPPSAEQERELAHRPPGQLLELDFVGSIVEPAFAYPFA 171 + G+ V + S + P S AY + Sbjct: 129 KYMMDRRSGSIVTVGSNPAGV-PRTSMA---------------------------AYASS 160 Query: 172 KQANSIRVRAASRQWGQREARVNSISPGIISTPMGQQELASPVGDGMRAMIAMSGT---- 227 K A + + + + R N +SPG T M A +G +I S Sbjct: 161 KAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADE--NGAEQVIKGSLETFKT 218 Query: 228 ----GRIGTPDDIAAAAAFLLGPEATFITGADLLVDGG 261 ++ P DIA A FL+ +A IT +L VDGG Sbjct: 219 GIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.1 bits (140), Expect = 5e-12 Identities = 61/279 (21%), Positives = 102/279 (36%), Gaps = 66/279 (23%) Query: 6 ITGSASGMGNATASRLREAGHRVIGVDLDGADVVADLSTQQGRLRAAS----DV------ 55 ITG+A G+G A A L G + VD + + +S+ + R A DV Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 56 ------IAACDGRLDGAVLAAGLGPSPGPGRLHRIAQ--------VNYLGVVELLQAWRP 101 I G +D V AG+ PG +H ++ VN GV ++ Sbjct: 73 DEITARIEREMGPIDILVNVAGV---LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 102 ALAAAERAKAVVIASNSTTTVPMVPRRSVRALLDHDADKAVRAVRLFGKAAPSLMYAASK 161 + V + SN PR S+ A YA+SK Sbjct: 130 YMMDRRSGSIVTVGSNPAGV----PRTSMAA------------------------YASSK 161 Query: 162 IAVSHWVRRQAVLPEWAGSGVRLNALAPGAIMTPLLAEQL--SDPTQAKAVRSFP----- 214 A + + + E A +R N ++PG+ T + L + + ++ Sbjct: 162 AAAVMFTK--CLGLELAEYNIRCNIVSPGSTETD-MQWSLWADENGAEQVIKGSLETFKT 218 Query: 215 -IPIGGFGEVTHMADWICFMLSDSADFLCGSVVFVDGGS 252 IP+ + + +AD + F++S A + + VDGG+ Sbjct: 219 GIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGA 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.7 bits (165), Expect = 3e-16 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 9/203 (4%) Query: 16 KVREAQRLRTRARVFDAAVAEIGRRGLAGADVAAIAAAAGVARGTFYFHFPTKEHVLVEL 75 + + + TR + D A+ ++G++ + IA AAGV RG Y+HF K + E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 76 -ERAEELAIVAKLRDPTADPTDLVSVLSSLVHQVVAV------ERRLGPVVFRDMLGLHF 128 E +E +L P D +SVL ++ V+ R L ++F + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 129 APTRPVEDQLGEHPLAEFVIETIARAQRANRVPPDADAGELGVIFLTGLFALLATGATTP 188 + + + +T+ A +P D +I + L+ P Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 189 DARTAL--LNRFVTTVVHGMEAR 209 + +V ++ Sbjct: 183 QSFDLKKEARDYVAILLEMYLLC 205
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.1 bits (184), Expect = 4e-18 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 3/184 (1%) Query: 10 RAAIVTGASSGIGEEFARILSQRGYQVVLVARSADRLEALAGRL---GSDTHPLPADLSV 66 + A +TGA+ GIGE AR L+ +G + V + ++LE + L PAD+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 67 RSDRAGLVDRVAALGLVPDILINNAGLSTLGPVAKSVPEQELNLVEVDVAAVVDLCSRFL 126 + + R+ DIL+N AG+ G + E+ V+ V + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 127 PAMVERGRGAVLNVASVAGFAPLPGQAAYGAAKAFVLSYTHSLRGELHGSGVSVTALSPG 186 M++R G+++ V S P AAY ++KA + +T L EL + +SPG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 187 PVDT 190 +T Sbjct: 189 STET 192
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 43.7 bits (103), Expect = 4e-06 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 32/269 (11%) Query: 208 TVAVILIMLLFVYRSPVTVFLLLVTVGLELTAARGAVALLGHSGLIGLSTFAVSLLTSLA 267 + V L+M LF ++ + + V + L +A G+S L+ F + L A Sbjct: 348 IMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT-LTMFGMVL----A 401 Query: 268 IAAGTDYGIFIVGRYQEARQAGEDRESAFYTMYRGTAHV---ILGSGLTISAA---TFCL 321 I D I +V + ED+ + + + ++G + +SA Sbjct: 402 IGLLVDDAIVVVENVERVMM--EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFF 459 Query: 322 SFTRMPYFQTLGIPCSVGMLVALLVALTLAPAVLVV-------------GGRFGAFDPKR 368 + ++ I M +++LVAL L PA+ GG FG F+ Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTF 519 Query: 369 VLQVRGWRRVGTAIVRWPLPILAVTCAVALVGLITLPGYRPS----YNDRAYLPSFIPAN 424 V + I+ L + A+ + G++ L PS D+ + I Sbjct: 520 DHSVNHYTNSVGKILGSTGRYLLIY-ALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLP 578 Query: 425 QGLAVADRHFSQARINPEILMIESDHDMR 453 G ++ L E + Sbjct: 579 AGATQERTQKVLDQVTDYYLKNEKANVES 607 Score = 40.2 bits (94), Expect = 4e-05 Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 15/210 (7%) Query: 154 QGELLANESVEAVRKIVD--ATPAPPGVKAYVTGGPAMAADLHKSGDRSMAKITLTTVAV 211 QGE S +++ A+ P G+ TG M+ SG+++ A + ++ V Sbjct: 827 QGEAAPGTSSGDAMALMENLASKLPAGIGYDWTG---MSYQERLSGNQAPALVAIS-FVV 882 Query: 212 ILIMLLFVYRSPVTVFLLLVTVGLELTAARGAVALLGHSGLIGLSTFAVSLLTSLAIAAG 271 + + L +Y S +++ V L + A L + F V LLT++ ++A Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV---YFMVGLLTTIGLSAK 939 Query: 272 TDYGIFIVGRYQEARQA-GEDRESAFYTMYRGTAHVILGSGLTISAATFCLSFTRMP--- 327 I IV ++ + G+ A R IL + L L+ + Sbjct: 940 N--AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 328 YFQTLGIPCSVGMLVALLVALTLAPAVLVV 357 +GI GM+ A L+A+ P VV Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027 Score = 39.4 bits (92), Expect = 7e-05 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 10/160 (6%) Query: 773 LIAGIASLCLIFVIMLILTRALVAAGVIVGTVAISLGASFGLSVLLWQHIIGMPLHWLVI 832 L I L+F++M + + + A + V + L +F + I + + +V+ Sbjct: 344 LFEAIM---LVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 833 AMSVIVLLAVGSDYNLLLVSRFKQEIPAGINTGIIRSMGGTGKVVTNAGLVFAFT---MA 889 A+ ++V A+ N V R E +SM + +V + MA Sbjct: 401 AIGLLVDDAIVVVEN---VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMA 457 Query: 890 SMVVSDVRMIGQVGTTIGLGLLFDTLVVRAFMTPAIAALL 929 S + Q TI + LV TPA+ A L Sbjct: 458 FFGGSTGAIYRQFSITIVSAMALSVLVALIL-TPALCATL 496
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 30.8 bits (69), Expect = 4e-04 Identities = 20/57 (35%), Positives = 28/57 (49%) Query: 19 IDETDLIDGDATDLRDLGLDSVRFVLLMKRLGVDRESELPSRLAENLSIEGWVSELS 75 + ET D DL D GLDSVR + L+++ + LAE +IE W L+ Sbjct: 243 LQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.4 bits (76), Expect = 0.001 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 8/109 (7%) Query: 271 TPITAPVAAPA--------ERSVADLAGPQPVVGLTPAASAFAPPSPQATSPAPSAPSPA 322 PI+ + APA + + P+P P AP + P P Sbjct: 48 QPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 107 Query: 323 PTGSPPSSPAISYAVLGPAPPGVSSGPRATTGAAATATDTTRAAAPAAL 371 + PA P ++ P T + ATA + + A+ Sbjct: 108 VKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASG 156
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 118 bits (298), Expect = 1e-35 Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 22/213 (10%) Query: 3 SETGLSRREELLAVATKLFAARGYHGTRMDDVADVIGLNKATVYHYYASKSLILFDIY-- 60 + R+ +L VA +LF+ +G T + ++A G+ + +Y ++ KS + +I+ Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 61 -----RQAAEGTLGALHAEPSWTAREALYQYTVRLLTGIADNPER---AAVYFQEQPYIA 112 + +P RE L + +L R + F + ++ Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREIL----IHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 113 EWFTPEQVAEVREKEAQVHEHVHGLIDRGIASGEFYE-CDSHVVA---LGYIGMTLGSYR 168 E +Q R + ++ + + I + + A GYI + + Sbjct: 122 EMAVVQQAQ--RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN-- 177 Query: 169 WLRPHGRRTAREIAAEFSTALLRGLIRDESIRN 201 WL ++ A ++ LL + ++RN Sbjct: 178 WLFAPQSFDLKKEARDYVAILLEMYLLCPTLRN 210
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.7 bits (69), Expect = 0.015 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 22/118 (18%) Query: 20 GIAATLQVANSAAAAPTSGLLAAAQDEVSAAIA-------------KVFSAYGQEYQAAI 66 A L + +AA S + A +IA + F G + + + Sbjct: 295 RAAQGLSTSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLL 354 Query: 67 AQ-------ASAFHTEFTRALAAAGAAYAQAEAANASLITAGVSDALTAITTPIQSLL 117 A A T + LA+ + + A SL+ A VS + A+T I +L Sbjct: 355 AAFHKETGAIDASLTTISTVLASVSSGISAAATT--SLVGAPVSALVGAVTGIISGIL 410
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 30.5 bits (68), Expect = 0.010 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 54 TGIAAINDLDAVLATAPECVVYCAMGDTRLPDAMADVMRILAAGSNV---VGSSPGLLQY 110 + + IN+ + A + E + R DAM + M AG+ V VGSS + Sbjct: 177 SSVEYINNWEQAKALSVELEINFETRGKRGQDAMYEYMAQACAGNRVRRSVGSSLSCINL 236 Query: 111 PWGVIPDKYIARVQRAAEQG 130 W VI DK +++ E G Sbjct: 237 DWDVIRDKTKTKIESLKEHG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (320), Expect = 6e-38 Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 18/251 (7%) Query: 4 VDGKVALISGGARGMGASHARLLVQEGAKVVIGDILDEEGKALAEEIGDAARYVH---LD 60 ++GK+A I+G A+G+G + AR L +GA + D E+ + + + AR+ D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 VTQPDQWEAAVATAVDEFGKLDVLVNNAGIVALGQLKKFDLGKWQKVIDVNLTGTFLGMR 120 V + A E G +D+LVN AG++ G + +W+ VN TG F R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 AAVEPMTAAGSGSIINVSSIEGLRGAPAVHPYVASKWAVRGLTKSAALELAPLNIRVNSI 180 + + M SGSI+ V S ++ Y +SK A TK LELA NIR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 HPGFIRTPMTANLPDD---------------MVTIPLGRPAESREVSTFVVFLASDDASY 225 PG T M +L D IPL + A+ +++ V+FL S A + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 226 ATGSEFVMDGG 236 T +DGG Sbjct: 246 ITMHNLCVDGG 256
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.8 bits (67), Expect = 0.029 Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 26/159 (16%) Query: 30 GRYRGRASALVRPASADQVAEVLRVCRDAGAHVTVQGGRTSLVAGTVP-EHDDVLLSTER 88 G+ LV A + +V G +G +++ + V L T Sbjct: 711 GQPLNDTVVLV---KAPGAKDA-KVENQTGVRTDWRG--YAVLPYATEYRENRVALDTNT 764 Query: 89 ICDVADVDTLERRVAVGAGA---------TLAAVQRAATAAG--LVFGVDLSARESATVG 137 + D D+D V GA + T L FG +++ S + G Sbjct: 765 LADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSG 824 Query: 138 -----GMA---STNAGGLRTVRYGNMGEQVVGLDVALPD 168 G G V++G + LP Sbjct: 825 IVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPP 863
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 2e-12 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Query: 17 TRQRILAATAEVLARSGKTKLSLSEVAAQAGVSRPTLYRWFASKEELL-ATFSRYERQVF 75 TRQ IL + ++ G + SL E+A AGV+R +Y F K +L + E + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 76 ESGLSKATAGLKG-VDKLDAALRFIVDYQYSYSGVR 110 E L + L L +++ + R Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRR 107
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 28.0 bits (62), Expect = 0.041 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 14/111 (12%) Query: 58 LSRVVVDLIGAVPADGDLWVSSRIERGGKQIELVSAELAAPGPDGRPRAVARASGWRLAQ 117 + + VD G + AD + I + K L P P P ++A R Sbjct: 105 VGKGEVDSKGEIKADSGGGTDAPIRKPFK--------LTPPQPTMSPISIAD----RDFG 152 Query: 118 LDTQELRHAAEQPPRPLAEARNRKLAPMSWDRNYVHSLDWRWLTEPMTPGP 168 +D + A Q +P + R A ++W +N +D+ + +P PG Sbjct: 153 IDIPNIPQAQRQAAQPPLNDQKRAAARIAWLKNCA-GIDYM-VKDPNNPGH 201
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.5 bits (84), Expect = 2e-04 Identities = 18/77 (23%), Positives = 19/77 (24%), Gaps = 1/77 (1%) Query: 423 SSPPNPNGLPPTPGIPIAGRPGEPAPDAPGTPVPLPPDAPPGARTEPVGPAGPTPPPSTF 482 PP P P PI P E P P P P + P S Sbjct: 67 QPPPEPVVEPEPEPEPIPEPPKEAPVVIE-KPKPKPKPKPKPVKKVEQPKRDVKPVESRP 125 Query: 483 APGLPPGPPAPPGPGPQ 499 A PA P Sbjct: 126 ASPFENTAPARPTSSTA 142 Score = 33.8 bits (77), Expect = 0.001 Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 2/104 (1%) Query: 415 PAPLDGVESSPPNPNGLPPTPGI-PIAGRPGEPAPDAPGTPVPLPPDAPPGARTEPVGPA 473 PAP + + P L P + P EP P+ P P P +AP P Sbjct: 44 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVIEKPKPKPK 102 Query: 474 GPTPPPSTFAPGLPPGPPAPPGPGPQLPDPYITPGGTGGSGATG 517 P P P + + + A Sbjct: 103 PKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146 Score = 30.3 bits (68), Expect = 0.014 Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 10/94 (10%) Query: 433 PTPGIPIAGRPGEPAPDAPGTPVPLPPDAPPGARTEPVGPAGPTP----PPSTFAPGLPP 488 P P PI+ PA P PP EP P P P Sbjct: 44 PAPAQPISVTMVAPA----DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 489 GPPAPPGPGPQLP--DPYITPGGTGGSGATGGSQ 520 P P P ++ + P + + + Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFENTA 133
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.0 bits (75), Expect = 0.002 Identities = 15/44 (34%), Positives = 15/44 (34%) Query: 485 LPPIGLQAPVPIQPPPPGPEVIPGPVAPTPAPGPAPAPVGAPLP 528 L P P P P PE P P P AP P P P Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 98 Score = 29.2 bits (65), Expect = 0.031 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 8/80 (10%) Query: 460 PDIEPVQSTLQTPPGPPNAYDEYPVLPPIGLQAPVPIQPPPPGPEVIPGPVA-----PTP 514 + VQ + P + P P +APV I+ P P P+ P PV P Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Query: 515 APGPAPAPVGAPLPAEAGAG 534 P + +P A A Sbjct: 113 DVKPVESRPASPFENTAPAR 132 Score = 29.2 bits (65), Expect = 0.034 Identities = 15/52 (28%), Positives = 15/52 (28%) Query: 477 NAYDEYPVLPPIGLQAPVPIQPPPPGPEVIPGPVAPTPAPGPAPAPVGAPLP 528 D P PV P P P P AP P P P P P Sbjct: 51 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 102
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 28.3 bits (63), Expect = 0.034 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 5/91 (5%) Query: 219 TYDPSTLQEDFARARSLTTDKYREQLAVQQETVAKGHPV-----LNEYWVTDSSIQAATP 273 + + +E F ++ +++ + +T P + +V + Sbjct: 108 GWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGG 167 Query: 274 DHATMLMFMQGRRGSPPEIRYISATVRVSFA 304 + A + + GS AT++ Sbjct: 168 NVAQVYFTKESVTGSNSTKTDAVATIKYKVD 198
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 27.5 bits (61), Expect = 0.030 Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 19/102 (18%) Query: 24 KRQWGLPLAATAAAVLMAAAITVCSLM---------------FASHVTRYHAARKDHEVV 68 K W + A A A A+ + + AS + H Sbjct: 33 KLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDATITYDE 92 Query: 69 NSVKSFMSEFT----SVDPYHANEYIEGILAHATGDFAKQYR 106 K F++ + EY + ++ + ++ Sbjct: 93 AVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWS 134
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 33.2 bits (75), Expect = 0.001 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 40 PAAEAEPAEGAADDEATTDSVEDTGEASADSTDPDTDADADADAEADGAKGKAAARRARP 99 P E PAE A++ A ++ + + +PD D + DA+ + DG G A P Sbjct: 327 PLPEVSPAENPANNPAPNEN-----PGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVP 381 Query: 100 KRLTGR 105 R GR Sbjct: 382 DRPNGR 387
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 31.6 bits (71), Expect = 0.008 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 5/113 (4%) Query: 102 DRAQVYGSAVIPPTFSSQLRDFAVSAVQPGSTDRPVITISTNPRAGTLGASIAGQTLTQA 161 D +V G I S + R V+A D I +S N T + QT T + Sbjct: 264 DFEKVTGR--IDKNVSPEARHPLVAAYPIVHVDMENIILSKNEDQST--QNTDSQTRTIS 319 Query: 162 MAAANSK-VGERVTAEVAAQTGGAPLSGASALGLASPIDVKTTVYNPLPNGTG 213 + S+ V + G+ + G ++ + + L Sbjct: 320 KNTSTSRTHTSEVHGNAEVHASFFDIGGSVSAGFSNSNSSTVAIDHSLSLAGE 372
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.9 bits (101), Expect = 1e-06 Identities = 71/334 (21%), Positives = 118/334 (35%), Gaps = 27/334 (8%) Query: 59 GTLLSWYALVAALTTVPLVRWTAHWPRRHALMVSLVCLTISQLISALAPNFAVLAAGRAL 118 G LL+ YAL+ L + + RR L+VSL + I A AP VL GR + Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 119 CAITHG---LLWSVIAPIATRLVPPSHAGRATTSIYIGTSLALVIGSPLTAALSLMWGWR 175 IT + + IA I H G + G V+G L S + Sbjct: 106 AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFF 164 Query: 176 LAAVCVTVAAAVVTVAARLLLPEMVLSAD---QLQYVGPRSRHHRNRALIIVSLITMVGV 232 AA + LLPE + + + P + R + +V+ + V Sbjct: 165 AAAALNGLNFLTGC----FLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 233 TGHFVSY---TYIVVIIRQVVGVRGPSLAWLLAAYGVAGVVAVALVARPLDRRPKGTIIF 289 V V+ ++ LAA+G+ +A A++ P+ R G Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAAR-LGERRA 279 Query: 290 CVAGLTFAFVLLTALAFGGH--LAPMTALVVGTGAIVLWGAAATAVSPMLQSAAMRSGAD 347 + G+ LAF +A +++ +G I + P LQ+ R + Sbjct: 280 LMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM---------PALQAMLSRQVDE 330 Query: 348 DPDGASGLYVTAFQ-VGIMAGSLIGGLLYERSVA 380 + G + A + + G L+ +Y S+ Sbjct: 331 ERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT 364
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.3 bits (73), Expect = 0.002 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 2/88 (2%) Query: 42 GDPPVIAPAEPAPDPLAPPPGPLALPPMPDPLAPPPFPDPLAPPPLVPVAAGPVAGQDP- 100 PP EP P+P P P P + + P P P P + + Sbjct: 66 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRP 125 Query: 101 -TPFFGPPPFRPPSFNPVDGAMVGVAKP 127 +PF P RP S V Sbjct: 126 ASPFENTAPARPTSSTATAATSKPVTSV 153 Score = 31.5 bits (71), Expect = 0.004 Identities = 11/81 (13%), Positives = 15/81 (18%) Query: 32 PAVADPDDAPGDPPVIAPAEPAPDPLAPPPGPLALPPMPDPLAPPPFPDPLAPPPLVPVA 91 P+ P VI +P P P P + P P Sbjct: 79 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPT 138 Query: 92 AGPVAGQDPTPFFGPPPFRPP 112 + P Sbjct: 139 SSTATAATSKPVTSVASGPRA 159
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.1 bits (88), Expect = 8e-06 Identities = 18/152 (11%), Positives = 52/152 (34%), Gaps = 14/152 (9%) Query: 5 RERMVISAVLLIRERGARATAISDVLQHSGAPRGSAYHYFPGGRTQLLCEAVDYAGAHVA 64 R+ ++ A+ L ++G +T++ ++ + +G RG+ Y +F ++ L E + + +++ Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHF-KDKSDLFSEIWELSESNIG 71 Query: 65 KIIGSANRSLDLLDTLIDQYREQLRATDFRAGCPVAAVSVEAGEPSDRERMAPVVEHAAA 124 ++ + RE L + R + ++ H Sbjct: 72 ELE--LEYQAKFPGDPLSVLREILIHV-LES----------TVTEERRRLLMEIIFHKCE 118 Query: 125 VFDRWSDLIAQRFVSDGIPLDSAHELAVTAMS 156 + + + D + + Sbjct: 119 FVGEMAVVQQAQRNLCLESYDRIEQTLKHCIE 150
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.6 bits (71), Expect = 0.002 Identities = 33/131 (25%), Positives = 40/131 (30%), Gaps = 8/131 (6%) Query: 60 ADLAIVSTKADELRQASKIARDGAGTIGIAQRRVLHAVEDAHNAGFTVGEDFSVTDIRTS 119 +D +V A Q R+ +L A FT+ DI T Sbjct: 491 SDKLVVMRDASG--QHRLWVRNSGSEPASGNTMLLVQTPRGSAATFTLANKDGKVDIGTY 548 Query: 120 RSSAEQAARQAQAQAQALATDIRQRAVEPLPPPAPGRLPPLTPGEMATPRLPAPPPQPPI 179 R + A A P P P PG P P + P P PPQPP Sbjct: 549 RYRLAANGNGQWSLVGAKAPP------APKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQ 602 Query: 180 RGGADLAPAEP 190 R AP P Sbjct: 603 RQPEAPAPQPP 613
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 2e-04 Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 135 GNGGNGGSGAPGQRGGDGGDAGLLGKGGYGGNGGAGQT------GGTGGSVGLFGNGGGG 188 G+G +GA G G LG GG G + G+G + GG GS +G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 189 GGGGAGGGAGGLGGDAGLVFGVGGPGGDGGDGGGTGGAGGAGGTFWG 235 G GG G +GG G G + V P G T GAGG + Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 36.2 bits (83), Expect = 2e-04 Identities = 37/110 (33%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 159 GKGGYGGNGGAGQTGGTGGSVGLFGNGGGGGGGGAGGGAGGLGGDAGLVFGVGGPGGDGG 218 G G G N GA T G GG G G GGGA G + GG G G Sbjct: 3 GGDGRGHNTGAHSTSGN--------INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI 54 Query: 219 DGGGTGGAGGAGGTFWGPGGAGGSGGHGGAGIAGNGGAGGPGGAVFGTGG 268 GG G G GG G G G G + +A G P + G GG Sbjct: 55 HWGGGSGHGNGGGN--GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 34.3 bits (78), Expect = 6e-04 Identities = 30/108 (27%), Positives = 36/108 (33%) Query: 122 GTGQDGGDGGILWGNGGNGGSGAPGQRGGDGGDAGLLGKGGYGGNGGAGQTGGTGGSVGL 181 G G+ G NGG G GG +G + G G GGS Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 182 FGNGGGGGGGGAGGGAGGLGGDAGLVFGVGGPGGDGGDGGGTGGAGGA 229 G G G GGG+G G A + FG G G + GA Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 3e-14 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 2/157 (1%) Query: 13 RRAAIVEAAEAEFGAHGFSQGSLNVIARRARVAKGSLFQYFADKRDLYAYIADIASQRVR 72 R I++ A F G S SL IA+ A V +G+++ +F DK DL++ I +++ + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 73 THIEGLIREL--DSSRPFFEFLTDLLDGWVAYFAEHPRERALHAAATLEVDTDARISVRS 130 + D E L +L+ V + + + Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 131 VIHRHYLEVLRPLVRDALARGDLRADSDTDALLSLLL 167 + + + ++ + L AD T ++ Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMR 168
>cloacin#Cloacin signature. Length = 551 Score = 35.8 bits (82), Expect = 7e-04 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 439 GAGTGGAGGAGAHGFGLLSGTAGAGGAGGAASAGTGGAGGL----GGTGFGLIAAGGDGG 494 G G G GA + G ++G G GG AS G+G + GG+G G+ GG G Sbjct: 4 GDGRGHNTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 495 GAGTGVGSNGGDGGGGGGAHAVLAAIA 521 G G G G++GG G GG AV A +A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 34.7 bits (79), Expect = 0.001 Identities = 33/113 (29%), Positives = 38/113 (33%), Gaps = 1/113 (0%) Query: 133 GDAGGPGGLLFGNGGNGGSGSAGMAGGAGGSAGLIGNGGAGGAGGADAAGGPGGAGGWLW 192 GD G GN G G+ G G S G G G + G GG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDG-SGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 193 GGGGAGGLGGAASGAGNGGAGGAGGAGGAFIAIGGVGGDGGAASSGTGGVGGA 245 G GG G G SG G + A F A+ G G A S G + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 33.9 bits (77), Expect = 0.003 Identities = 32/118 (27%), Positives = 38/118 (32%) Query: 633 TGTAGSGGNGGFVENFDFFGFGVAHGGDGGSGGAASGAGGIGGAGGNGGSGTTPLFGAYS 692 +G G G N G G G GG SG G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 693 GGAGGDGGAATGTGGAGGNGGAGGAASGLGVGIGGAGGHGGAAPTGNGGSGGAGAGGL 750 G GG G + G G GGN A A G G GG A + + G+ A + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Score = 33.5 bits (76), Expect = 0.003 Identities = 25/79 (31%), Positives = 29/79 (36%) Query: 691 YSGGAGGDGGAATGTGGAGGNGGAGGAASGLGVGIGGAGGHGGAAPTGNGGSGGAGAGGL 750 ++ GA G G G GG SG GG G+ GGSG GG Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 751 GLIGAGGNGGDAGAGVAAA 769 G G G G + VAA Sbjct: 69 GNSGGGSGTGGNLSAVAAP 87 Score = 33.1 bits (75), Expect = 0.005 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 324 GQGGAGGIGGAASTGMAGAGGSGGSCVAFDFVGFAAAHGGAGGTGGAATGVGATAGAAGS 383 G+G G + G G G A D G+++ + GG G+ G +G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 384 GGLGVAIVGSGVGGVGGVGGAATGAGATA-AAGGAGGLGLAAVGSGTGGA 432 GG G + GSG GG A G A + GAGGL ++ A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 33.1 bits (75), Expect = 0.005 Identities = 38/114 (33%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 489 AGGDGGGAGTGVGSNGGDGGGGGGAHAVLAAIAGSGGQGQAGTSGFGGFGGSGGSAESLF 548 +GGDG G TG S G+ GG V G G +S +GG GS Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGV----GGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 549 FSIGGAGGAGGDASTGGGGLGGNGGVAVAHSPIGID-IGIGGAGGHGGSGTSGA 601 G G G S GG G GGN A G + GAGG S ++GA Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.005 Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 670 AGGIGGAGGNGGSGTTPLFGAYSGGAGGDGGAATGTGGAGGNGGAGGAASGLGVGIGGAG 729 +GG G G T+ G G GGA+ G+G + N GG G G GI G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGG---GSGSGIHWGG 58 Query: 730 GHGGAAPTGNGGSGGAGAGGLGL 752 G G GNG SGG G L Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 33.1 bits (75), Expect = 0.005 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 2/112 (1%) Query: 456 LSGTAGAGGAGGAASAGTGGAGGLGGTGFGLIAAGGDGGGAGTGVGSNGGDGGGGGGAHA 515 +SG G G GA S GG G G G DG G + GG G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVG--GGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 516 VLAAIAGSGGQGQAGTSGFGGFGGSGGSAESLFFSIGGAGGAGGDASTGGGG 567 G G G SG GG + + + F GAGG A + G Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 32.8 bits (74), Expect = 0.006 Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 728 AGGHGGAAPTGNGGSGGAGAGGLGLIGAGGNGGD-AGAGVAAADGGDGGNAGLVINGTYE 786 +GG G TG + G GG +G GG D +G G G +G+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 787 ASPYGNGGNGGNGVNGGSGGKGGSAGQVGGTP 818 G GN G G G +A G P Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFP 93 Score = 32.8 bits (74), Expect = 0.007 Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 3/119 (2%) Query: 652 GFGVAHGGDGGSGGAASGAGGIGGAGG-NGGSGTTPLFGAYSGGAGGDGGAATGTGGAGG 710 G G G SG G G+G GG + GSG + + GG+G G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS--GIHWGGGSGHG 63 Query: 711 NGGAGGAASGLGVGIGGAGGHGGAAPTGNGGSGGAGAGGLGLIGAGGNGGDAGAGVAAA 769 NGG G + G G G GAGGL + + G A A + AA Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Score = 32.0 bits (72), Expect = 0.010 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 5/90 (5%) Query: 391 VGSGVGGVGGVGGAATGAGATAAAGGAGGLGLAAVGSGTGGAGGAGGVGAGTGGAGGAGA 450 + G G+G GGA+ G+G ++ GG + + G G G GG +GG G G Sbjct: 20 INGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGG 79 Query: 451 HGFGLLSGTAGAGGAGGAASAGTGGAGGLG 480 + A A G + T GAGGL Sbjct: 80 NL-----SAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.6 bits (71), Expect = 0.014 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 697 GDGGAATGTGGAGGNGGAGGAASGLGVGIGGAGGHG-GAAPTGNGGSGGAGAGGLGLIGA 755 G G TG +G G +GLGVG G + G G + GG G+G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 756 GGNGGDAGAGVAAADGGDG 774 G GG+ +G + GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 30.8 bits (69), Expect = 0.026 Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 172 AGGAGGADAAGGPGGAGGWLWGGGGAGGLGGAASGAG----NGGAGGAGGAGGAFIAIGG 227 +GG G G +G G G G GGA+ G+G N GG G+G + G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 228 VGGDGGAASSGTGGVGGAGGNADGLIVSLG-GAGGHGGDATTGIGGAGGAGGMATARIPA 286 G GG +SG G G +A V+ G A G + + GA A A I A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Query: 287 GI 288 + Sbjct: 122 AL 123 Score = 30.5 bits (68), Expect = 0.028 Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 12/118 (10%) Query: 193 GGGGAGGLGGAASGAGN--GGAGGAGGAGGAFIAIGGVGGDGGAASSGTGGVGGAGGNAD 250 GG G G GA S +GN GG G G GG DG SS G GG+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG--------ASDGSGWSSENNPWG--GGSGS 52 Query: 251 GLIVSLGGAGGHGGDATTGIGGAGGAGGMATARIPAGINFNVGGAGGHGGAGATGGAG 308 G+ G G+GG GG+G G ++ P F G GG + AG Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 30.5 bits (68), Expect = 0.034 Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 263 GGDATTGIGGAGGAGGMATARIPAGINFNVGGAGGHGGAGATGGAGGGGGSAYSGYVGIA 322 GGD GA G P G+ G + G G + GGG GS G Sbjct: 3 GGDGRGHNTGAHSTSGNINGG-PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 323 FGQGGAGGIGGAASTGMAGAGGSGGSCVAFDFVGFAAAHGGAGGTGGAATGVGATAGAAG 382 G GG G G S G G + + VAF F + GAGG + + +A A Sbjct: 62 HGNGGGNGNSGGGS-GTGGNLSAVAAPVAFGFPALSTP--GAGGLAVSISAGALSAAIAD 118 Score = 30.1 bits (67), Expect = 0.048 Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 6/131 (4%) Query: 156 MAGGAGGSAGLIGNGGAGGAGGADAAGGPGGAGGWLWGGGGAGGLGGAASGAGNGGAGGA 215 M+GG G + +G G G GG G G SG+G GG+ Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 216 GGAGGAFIAIGGVGGDGGAASSGTGGVGGAGGNADGL-IVSLGGAGGHGGDATTGIGGAG 274 G G GG G GG + +G A A G +S GAGG + G A Sbjct: 61 GHGNG-----GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Query: 275 GAGGMATARIP 285 A MA + P Sbjct: 116 IADIMAALKGP 126
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 41.1 bits (96), Expect = 6e-06 Identities = 28/125 (22%), Positives = 40/125 (32%), Gaps = 3/125 (2%) Query: 470 VVPSVGPLPAPSRSIAASSAPPKALEP--SFVPPPASAAR-APSAAPAPTSVAPPPPPPR 526 V V LPAP++ I+ + P LEP + PPP P P P P Sbjct: 36 SVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 95 Query: 527 PVATATTTVAPPVTTTKTTVPPTTAATTTPTTTPPPTTTAPPTTTAPPSTTSTVKMTTEW 586 PV + + P + T A PT++ + TS + Sbjct: 96 KPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVAS 155 Query: 587 LHVPL 591 L Sbjct: 156 GPRAL 160 Score = 29.6 bits (66), Expect = 0.030 Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 3/102 (2%) Query: 467 QSPVVPSVGPLPAPSRSIAASSAPPKALEPSFVPPPASAARAPSAAPAPTSVAPPPPPPR 526 Q P P V P P P P +E P P + P Sbjct: 67 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEK---PKPKPKPKPKPVKKVEQPKRDVKPVES 123 Query: 527 PVATATTTVAPPVTTTKTTVPPTTAATTTPTTTPPPTTTAPP 568 A+ AP T+ T T+ T+ + P + P Sbjct: 124 RPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQP 165
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.7 bits (92), Expect = 3e-05 Identities = 35/241 (14%), Positives = 52/241 (21%), Gaps = 34/241 (14%) Query: 262 AGALAYSALADDGE-----DAVEGRRRPLVLAGSAMLGIAAFAAGLMVVTLTSDVRPAAA 316 GA Y +G VE R + + A V Sbjct: 964 LGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTP--NNIQAD------VPSVPSNNE 1015 Query: 317 TQPSPREGVLTPASPAAPPKTAAPVPAKAPAQVP--------APGPAPAASPVPVAAPPS 368 E + P +PA P +T V + + A V A + Sbjct: 1016 EIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSN 1075 Query: 369 VVQPPPVVRAPR---------PTVVKPPP----QYIAPATQPRRTPAPQAPALTPVQAPA 415 V + T K + A + P+ + + Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Query: 416 PEVRPPVAVPEPAPAPPVPTQAPMTMYLHLPFVSIPIPINPPPPPAPPPEPAPVEPPPPE 475 E P A P P V + P + P P E V Sbjct: 1136 SETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSV 1195 Query: 476 P 476 Sbjct: 1196 V 1196 Score = 35.8 bits (82), Expect = 4e-04 Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 7/121 (5%) Query: 313 PAAATQPSPREGVLTPASPAAPPKTAAPVPAKAPAQVPAPGPAPAASPVPVAAPPSVVQP 372 P +Q SP++ P A P P + + A + P S V+ Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARE-NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 373 PPVVRAPR---PTVVKPPPQYIAPATQPRRTPAPQAPALTPVQAPAPEVRPPVAVPEPAP 429 P +VV+ P TQP + P VR EPA Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQPTVN---SESSNKPKNRHRRSVRSVPHNVEPAT 1238 Query: 430 A 430 Sbjct: 1239 T 1239
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.035 Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 5/40 (12%) Query: 53 YQPPPGSVPPSYGYQPAFPGATP-----RSSSGNRAFWII 87 Y+ G + Q T +GNR FW + Sbjct: 672 YRGAYGRYVQDHPRQVVIWCTTNKRQYLFDITGNRRFWPV 711
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.033 Identities = 8/35 (22%), Positives = 18/35 (51%) Query: 13 RRPSGLVQPGDTMLVTMPAPEPADGEALLRTTYVG 47 G+V +T++V +P + + AL++ +G Sbjct: 344 HTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIG 378
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 34.7 bits (80), Expect = 6e-04 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 328 PNRPKATGALHGLRLANATPAHLARAAVEGLLCALADGLAQLT---EHGVVARRVLLIGG 384 R A G G L + + + G++ A+ L Q + R ++L GG Sbjct: 237 RGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGG 296 Query: 385 GARSQALREIAPLIFGVPVLV-PDPAEYVALGAAR 418 GA + L + G+PV+V DP VA G + Sbjct: 297 GALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>cloacin#Cloacin signature. Length = 551 Score = 39.7 bits (92), Expect = 3e-05 Identities = 41/117 (35%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 145 GANPGVAGGAGGAAGLIGNGGAGGSGGAGAAASGSGDGGDGGAGGAGGSGGWLYGTGGAG 204 G G GA +G I NGG G G G A+ GSG + G G G +G G Sbjct: 4 GDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 205 GSGGAGGVSGMNPGNHGGLGGNGGAGGAAGIVG--EGGAGGAGGMGGSGFTSAVTTA 259 G+GG G N G G GGN A A G GAGG+ S A++ A Sbjct: 63 GNGGGNG----NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 37.8 bits (87), Expect = 9e-05 Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 5/111 (4%) Query: 222 GLGGNGGAGGAAGIVGEGGAGGAGGMGGSGFTSAVTTAGGNGGNGGTGGGGGLLAGNAGA 281 G G N GA +G + G G G G S + + GG G+G G +G+ Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 282 GGAGGDGGGPVGDLGGNGGIGGDGGAAGLFGNGGAGGAGGGGGAAPVSGAA 332 GG G GGG G GG A FG G GG A +S A Sbjct: 66 GGNGNSGGG-----SGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 37.8 bits (87), Expect = 9e-05 Identities = 39/117 (33%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Query: 165 GAGGSGGAGAAASGSGDGGDGGAGGAGGSGGWLYGTGGAGGSGGAGGVSGMNPGNHGGLG 224 G G G A S SG+ +GG G G GG G+G + + GG SG GG G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 225 GNGGAGGAAGIVGEGGAGGAGGMGGSGFTSAVTTAGGNGGNGGTGGGGGLLAGNAGA 281 G G G +GG G GG+ A A G G GG ++ +AGA Sbjct: 62 HGNGGGN-------GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 33.9 bits (77), Expect = 0.002 Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 295 LGGNGGIGGDGGAAGLFGN--GGAGGAGGGGGAAPVSGAAAAGGAGGGGGAGGLLYGDGG 352 + G G G + GA GN GG G G GGGA+ SG ++ GGG G+ GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGI--HWGG 58 Query: 353 LGGAGGAGGEALDGGVGGSGGAG 375 G G GG GG G+GG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNL 81 Score = 33.5 bits (76), Expect = 0.002 Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 4/106 (3%) Query: 241 AGGAGGMGGSGFTSAVTTAGGNGGNGGTGGGGGLLAGNAGAGGAGGDGGGPVGDLGGNGG 300 +GG G +G S G G GGG +G + G G G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 301 IGGDGGAAGLFGNGGAGGAGGGGGAAPVSGAAAAGGAGGGGGAGGL 346 G GG GN G G GG +A + A A GAGGL Sbjct: 62 HGNGGGN----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 32.8 bits (74), Expect = 0.004 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 119 GADGTAPGQAGGAGGLLYGNGGNGAPG---ANPGVAGGAGGAAGLIGNGGAGGSGGAGAA 175 GA T+ GG GL G G + G N GG+G G G G GG G + Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 176 ASGSGDGGDGGAGGAGGSGGW-LYGTGGAGGSG 207 GSG GG+ A A + G+ T GAGG Sbjct: 72 GGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.5 bits (68), Expect = 0.018 Identities = 24/74 (32%), Positives = 26/74 (35%) Query: 406 RGGTGGTGGNGGVGGLLYGNGGRGGAGGDGANLAGGGNGGNGGDTRLIGNGGDGGHGGSG 465 RG G G G GG DG+ + N GG I GG GHG G Sbjct: 7 RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 466 ALVGGAGGSGGIGG 479 GGSG G Sbjct: 67 GNGNSGGGSGTGGN 80 Score = 29.3 bits (65), Expect = 0.041 Identities = 26/99 (26%), Positives = 34/99 (34%) Query: 126 GQAGGAGGLLYGNGGNGAPGANPGVAGGAGGAAGLIGNGGAGGSGGAGAAASGSGDGGDG 185 G+ G NG P G + G+ N GG G+G G G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 186 GAGGAGGSGGWLYGTGGAGGSGGAGGVSGMNPGNHGGLG 224 G G G G G A + A G ++ GGL Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.5 bits (60), Expect = 0.033 Identities = 18/82 (21%), Positives = 25/82 (30%) Query: 97 APTKTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTPTTTTTTTTAPTTTTTTTTNPMS 156 A TT T +TT T T + P++TT P T Sbjct: 390 AYNATTGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPSSTTPVVPKPVPVYEGATLTPV 449 Query: 157 PGAMPTFPSQLTPSIPTVINLP 178 T+P +T +I P Sbjct: 450 KATPETYPGVITLPEDLIIGFP 471
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.8 bits (82), Expect = 8e-05 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 10/73 (13%) Query: 27 PAGPPPSRPAGPQSGPPPQAPPGPDSLSPSEQFASAEGYDQEKPESEPKPWYRNPVT--- 83 A + + Q+ P A PG ++ Q A + + + P T Sbjct: 455 LAKLRAGKASDSQT---PDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGET 511 Query: 84 ----LTGWALLVM 92 T AL VM Sbjct: 512 ANPFFTAAALTVM 524
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 28.2 bits (62), Expect = 0.020 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 32 PIATPGAGPTEPSFPTRRPTTSP---PPPTSTSPSQPTSPASPTSPAGAIPLPPDDNGYV 88 P +P P P P T P P P + P + P + + +P NG Sbjct: 329 PEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPNGRH 388 Query: 89 FIETKSGQT---RCQINHDSVGCEAPFTNSPIKD 119 E K G+ C+ D + C+ +P +D Sbjct: 389 RKERKEGEDGGLLCKFFPDILACDRLPEPNPAED 422
>cloacin#Cloacin signature. Length = 551 Score = 39.3 bits (91), Expect = 8e-05 Identities = 31/100 (31%), Positives = 34/100 (34%) Query: 706 GAGGRGGDGGAYGNGGVGGNGGAGGAGSPGAHGGTAGEDGFNAGDGGHGGAGGTGGGGGA 765 G GRG + GA+ G G G GA G+ N GG G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 766 KGGVGGAGGSGGVGGQGGTGGDGATGLSGKAGTGTDGESG 805 G G GG G G A G T G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 36.2 bits (83), Expect = 7e-04 Identities = 41/116 (35%), Positives = 48/116 (41%), Gaps = 11/116 (9%) Query: 133 GSGQAGGNGGLLWGNGGNGGSGGVGQTGGAGGSAGLLGHGGAGGAGGVSGVSAVGATGGA 192 G G+ G NGG G+G GGA +G G G SG+ G +G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH- 62 Query: 193 GGNGGWLYGNGGAGGLGGQGVLTGGNGGAGGAARFFG--AGGTGGAGGLGLGDTGG 246 GNGG G G G TGGN A A FG A T GAGGL + + G Sbjct: 63 --------GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 35.1 bits (80), Expect = 0.001 Identities = 29/88 (32%), Positives = 36/88 (40%) Query: 779 GGQGGTGGDGATGLSGKAGTGTDGESGGRGGHAGNGGNGGDGGAGGVSHAPGFLDGADGA 838 GG G GA SG G G G G G+G + + GG S + G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 839 GGSGGAGGNGGNGANGGNGGSAPNPIGF 866 G GG G +GG GGN + P+ F Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Score = 34.7 bits (79), Expect = 0.002 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 3/92 (3%) Query: 881 GAAGGVGGTGGISGDGSTHAAPGDDGIMGNGGHGGHGGDGSRDNPDGGGHPGDGGYGGNG 940 G G TG S G+ + P G+ GG G S +NP GGG +GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPT--GLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 941 GSGFNAGNGGNGGRGGSAHASLVGKAGNGGFG 972 G G N G GN G G +L A FG Sbjct: 61 GHG-NGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 34.7 bits (79), Expect = 0.002 Identities = 28/91 (30%), Positives = 33/91 (36%) Query: 741 AGEDGFNAGDGGHGGAGGTGGGGGAKGGVGGAGGSGGVGGQGGTGGDGATGLSGKAGTGT 800 +G DG G H +G GG G GGA G + G G+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 801 DGESGGRGGHAGNGGNGGDGGAGGVSHAPGF 831 G GG G G G GG+ A A GF Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGF 92 Score = 33.5 bits (76), Expect = 0.005 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 11/92 (11%) Query: 798 TGTDGESGGRGGHAGNGGNGGDGGAGGVSHAPGFLDGADGAGGSGGAGGNGGNGANGGNG 857 +G DG G H+ +G G GV G G S G+G + N GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGV-----------GGGASDGSGWSSENNPWGGGS 50 Query: 858 GSAPNPIGFENGHNGGNGGNGGYGAAGGVGGT 889 GS + G NGG GN G G+ G + Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 32.8 bits (74), Expect = 0.007 Identities = 31/101 (30%), Positives = 37/101 (36%) Query: 368 TGGDGGVGGTGGVGGTGGEGGFLGQRGAGGAGGAGGAGGLAGDGGRGAAGTFAGGTGIGG 427 +GGDG TG +G G G GG G + G +G+ G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 428 AGGDGGNAGVGGAGGAGGAGSVTGAHGAEGARPIGGNGGAG 468 G GGN GG G GG S A A G + G G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 32.8 bits (74), Expect = 0.008 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 557 IGGNGGAGTTGLAGHIGIDMNGGAGGVGGAGGNGGAGGTGGDAGHAQAGGYSDGLQGAGG 616 + G G G A ++NGG G+G GG + G+G + + GG S GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGG--ASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 617 DGGHGGSGGVAGDGGRGADAAAGSGLA 643 GHG GG GG S +A Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 32.8 bits (74), Expect = 0.008 Identities = 24/79 (30%), Positives = 31/79 (39%) Query: 281 GDGGAGGAAGLYGLGGAGGAGGDGGAGLSGGAGDAGGAGGHAGNGGAGGRGGWLVGNGGV 340 G G G G + G G G G + +G + + GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 341 GGLGGVGGTGGAGGAGGDG 359 G GG G +GG G GG+ Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 32.4 bits (73), Expect = 0.010 Identities = 26/78 (33%), Positives = 30/78 (38%) Query: 229 GAGGTGGAGGLGLGDTGGIGGIGGNAGALFGPGGAGGAGGAGGPGGANGTNGGDGGAGGA 288 G G GA GG G+G GA G G + GG G+ GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 289 AGLYGLGGAGGAGGDGGA 306 G GG G GG+ A Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 32.4 bits (73), Expect = 0.010 Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 6/115 (5%) Query: 466 GAGGRGADAIAAGKSGGAGGAGGNGGLFGHGGDGGDGGVGKAGEAGASGLLPGEAGFAGE 525 G GRG + A SG G G+ G DG G SG G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 526 AGGAGGNGGAGGSGGALAGDGGDGGAGGAGGIGGNGGAGTTGLAGHIGIDMNGGA 580 G G GGSG G + A + A +T AG + + ++ GA Sbjct: 63 GNGGGNGNSGGGSG------TGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGA 111 Score = 31.6 bits (71), Expect = 0.016 Identities = 31/120 (25%), Positives = 40/120 (33%) Query: 494 GHGGDGGDGGVGKAGEAGASGLLPGEAGFAGEAGGAGGNGGAGGSGGALAGDGGDGGAGG 553 G G + G G +GL G G + N GGSG + GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 554 AGGIGGNGGAGTTGLAGHIGIDMNGGAGGVGGAGGNGGAGGTGGDAGHAQAGGYSDGLQG 613 G GG+GT G + + G + G G A A A L+G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKG 125 Score = 31.6 bits (71), Expect = 0.020 Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 3/106 (2%) Query: 655 AGGEGGAAGGGSVAGTAGLDGIGPTSGGNGGNGGHGGSGAVGVEGGAGSAGGAGGRGGDG 714 +GG+G G+ + + ++G GPT G GG G GSG G G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNING-GPTGLGVGG-GASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 715 GAYGNGGVGGNGGAGGAGSPGAHGGTAGEDGFNAGDGGHGGAGGTG 760 +GNGG GN G GG+G+ G A F GAGG Sbjct: 60 SGHGNGGGNGNSG-GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.022 Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 280 GGDGGAGGAAGLYGLGGAGGAGGDGGAGLSGGAGDAGGAGGHAGNGGAGGRGGWLVGNGG 339 G + GA +G G G G G + SG + + GG +G+G G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 340 VGGLGGVGGTGGAGGAGGDGVVLG-SAGGTGGDGGVG 375 G GG GTGG A V G A T G GG+ Sbjct: 68 NGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.024 Identities = 21/68 (30%), Positives = 24/68 (35%) Query: 870 HNGGNGGNGGYGAAGGVGGTGGISGDGSTHAAPGDDGIMGNGGHGGHGGDGSRDNPDGGG 929 H+ NGG G GG SG S + G G GG G N + GG Sbjct: 14 HSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGG 73 Query: 930 HPGDGGYG 937 G GG Sbjct: 74 GSGTGGNL 81 Score = 31.2 bits (70), Expect = 0.026 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 840 GSGGAGGNGGNGANGGNGGSAPNPIGFENGHNGGNGGNGGYGAAGGVGGTGGISGDGSTH 899 G G G N G + GN P +G G + G+G + GG G+G G GS H Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 900 AAPGDDGIMGNGGHGGHGGDGS 921 G +G +GG G GG+ S Sbjct: 63 GNGGGNG--NSGGGSGTGGNLS 82 Score = 31.2 bits (70), Expect = 0.027 Identities = 24/78 (30%), Positives = 31/78 (39%) Query: 595 TGGDAGHAQAGGYSDGLQGAGGDGGHGGSGGVAGDGGRGADAAAGSGLAGGDGGRGGDPG 654 +GGD G +S GG G G GG + G ++ G +G GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 655 AGGEGGAAGGGSVAGTAG 672 G GG G +GT G Sbjct: 62 HGNGGGNGNSGGGSGTGG 79 Score = 30.8 bits (69), Expect = 0.030 Identities = 22/79 (27%), Positives = 25/79 (31%) Query: 236 AGGLGLGDTGGIGGIGGNAGALFGPGGAGGAGGAGGPGGANGTNGGDGGAGGAAGLYGLG 295 +GG G G G GN G GG G + G G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 296 GAGGAGGDGGAGLSGGAGD 314 G G G SG G+ Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 30.8 bits (69), Expect = 0.030 Identities = 26/81 (32%), Positives = 31/81 (38%) Query: 685 GNGGHGGSGAVGVEGGAGSAGGAGGRGGDGGAYGNGGVGGNGGAGGAGSPGAHGGTAGED 744 G G G + G + G G G G + G+G N GG G H G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 745 GFNAGDGGHGGAGGTGGGGGA 765 G G+G GG GTGG A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83 Score = 30.8 bits (69), Expect = 0.030 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Query: 792 LSGKAGTGTDGESGGRGGHAGNGGNGGDGGAGGVSHAPGFLDGADGAGGSGGAGGNGGNG 851 +SG G G + + G+ NGG G G GG S G+ + GG G+G + G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 852 ANGGNGGSAPNPIGFENGHNGGNGGNGGYGAAGGVGGTGGISGDGS 897 + GNGG N +G G GGN AA G +S G+ Sbjct: 60 SGHGNGGGNGN-----SGGGSGTGGNLSAVAAPVAFGFPALSTPGA 100 Score = 30.8 bits (69), Expect = 0.033 Identities = 31/115 (26%), Positives = 39/115 (33%), Gaps = 15/115 (13%) Query: 762 GGGAKGGVGGAGGSGGVGGQGGTGGDGATGLSGKAGTGTDGESGGRGGHAGNGGNGGDGG 821 GG +G GA + G G TG G S +G ++ G G +G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 822 AGGVSHAPGFLDGADGAGGSGGAGGNGGNGANGGNGGSAPNPIGFENGHNGGNGG 876 G GG G G G + +AP GF G GG Sbjct: 63 ---------------GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.5 bits (68), Expect = 0.037 Identities = 26/93 (27%), Positives = 29/93 (31%) Query: 908 MGNGGHGGHGGDGSRDNPDGGGHPGDGGYGGNGGSGFNAGNGGNGGRGGSAHASLVGKAG 967 M G GH + + G P G GG G + N GGS G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 968 NGGFGGTGGNSFGGVSGNGGNGGDGGHALHGQP 1000 G GG GNS GG G G P Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFP 93
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 3e-11 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 3/106 (2%) Query: 7 SPTQRSGVRDEMLHAAVALLDAHGPDALQTRKVAGAAGTSTMAVYTHFGGMPELIAEVAE 66 + + R +L A+ L G + ++A AAG + A+Y HF +L +E+ E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 67 EG---LRQFDTALAVPPSDDPVADLVATGAAYRRYAIERPHMYRLM 109 + + + DP++ L + LM Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM 110
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.049 Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 32 VSVLLGPSGTGKSVFLKSLIGL 53 VL G G GKS + +L+GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL 619
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.007 Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 2/153 (1%) Query: 147 ELSTLEAEMMVERKAVEDQRDA--DLEARAQKLEADLAELEAEGAKADARRKVRDSGERE 204 E + L A KA+E + A+ + LEA+ A LEA A+ + + + Sbjct: 149 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 208 Query: 205 MRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENLYRELQDRYGEYFTGAMGAESIQKL 264 + E L + K + +++ E ++K Sbjct: 209 DSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA 268 Query: 265 IETFDIDAEAEILRDVIRNGKGQKKLRALKRLK 297 +E + A+ + + L+ Sbjct: 269 LEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 48.4 bits (115), Expect = 3e-09 Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 24 AKLSRDAIVDGALTFLDREGWDSLTINALATQLGTKGPSLYNHV 67 A+L+R++++D AL L+ G D LT LA +LG + P+LY HV Sbjct: 2 ARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHV 45
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 587 bits (1516), Expect = 0.0 Identities = 163/676 (24%), Positives = 303/676 (44%), Gaps = 71/676 (10%) Query: 12 KVRNIGIMAHIDAGKTTTTERILYYTGISYKIGEVHDGAATMDWMEQEQERGITITSAAT 71 K+ NIG++AH+DAGKTT TE +LY +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 72 TCFWNDNQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSEQVWRQADKYDV 131 + W + ++NIIDTPGH+DF EV RSL VLDGA+ + K+GV+ Q+ ++ K + Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 132 PRICFVNKMDKIGADFYFSVRTMEERLGANVIPIQLPVGSEGDFEGVVDLVEMKAKVWSA 191 P I F+NK+D+ G D + ++E+L A ++ Q Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------------- 156 Query: 192 DAKLGEKYDVVDIPADLQEKADEYRTKLLEAVAETDEALLEKYLGGEELTEAEIKGAIRK 251 +L V + Q + V E ++ LLEKY+ G+ L E++ Sbjct: 157 KVELYPNMCVTNFTESEQ----------WDTVIEGNDDLLEKYMSGKSLEALELEQEESI 206 Query: 252 LTITSEAYPVLCGSAFKNKGVQPMLDAVIDYLPSPLDVPAAIGHVPGKEDEEVVRKPSTD 311 +PV GSA N G+ +++ + + S Sbjct: 207 RFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH--------------------RGQ 246 Query: 312 EPFSALAFKVATHPFFGKLTYVRVYSGKVDSGSQVINSTKGKKERLGKLFQMHSNKENPV 371 FK+ +L Y+R+YSG + V S K K ++ +++ + + + Sbjct: 247 SELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKI 305 Query: 372 ETASAGHIYAVIG----LKDTTTGDTLSDPNNQIVLESMTFPDPVIEVAIEPKTKSDQEK 427 + A +G I + L GDT P E + P P+++ +EP +E Sbjct: 306 DKAYSGEIVILQNEFLKLNS-VLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREM 360 Query: 428 LSLSIQKLAEEDPTFKVHLDQETGQTVIGGMGELHLDILVDRMRREFKVEANVGKPQVAY 487 L ++ ++++ DP + ++D T + ++ +G++ +++ ++ ++ VE + +P V Y Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Query: 488 KETIKRLVEKVEFTHKKQTGGSGQFAKVLISIEPFTGEDGATYEFESKVTGGRIPREYIP 547 E + K E+T + + +A + +S+ P G+ ++ES V+ G + + + Sbjct: 421 MERPLK---KAEYTIHIEVPPNPFWASIGLSVSP--LPLGSGMQYESSVSLGYLNQSFQN 475 Query: 548 SVDAGAQDAMQYGVLAGYPLVNLKVTLLDGAFHEVDSSEMAFKIAGSQVLKKAAAAAHPV 607 +V G + + G L G+ + + K+ G ++ S+ F++ VL++ A Sbjct: 476 AVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTE 534 Query: 608 ILEPIMAVEVTTPEDYMGDVIGDLNSRRGQIQAMEERSGARVVKAHVPLSEMFGYVGDLR 667 +LEP ++ ++ P++Y+ D I + ++ ++ +P + Y DL Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLT 594 Query: 668 SKTQGRANYSMVFDSY 683 T GR+ Y Sbjct: 595 FFTNGRSVCLTELKGY 610
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 79.9 bits (197), Expect = 2e-18 Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 13/155 (8%) Query: 13 VNIGTIGHVDHGKTTLTAAITKVLH-----DKYPELNESRAFDQIDNAPEERQRGITINI 67 +NIG + HVD GKTTLT ++ L+ + +++ + DN ERQRGITI Sbjct: 4 INIGVLAHVDAGKTTLTESL---LYNSGAITELGSVDKGTT--RTDNTLLERQRGITIQT 58 Query: 68 SHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQ 127 +Q E +D PGH D++ + + +DGAIL+++A DG QTR R+ Sbjct: 59 GITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK 118 Query: 128 VGVPYILVALNKSDAVDDEELLELVEMEVRELLAA 162 +G+P I +NK D + L V +++E L+A Sbjct: 119 MGIPTI-FFINKIDQNGID--LSTVYQDIKEKLSA 150
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (279), Expect = 1e-31 Identities = 88/271 (32%), Positives = 131/271 (48%), Gaps = 25/271 (9%) Query: 8 LDGRVAFVTGAARAQGRSHAVRLAREGADIIAMDICGPVSETITYAPATAADLSETIRAV 67 ++G++AF+TGAA+ G + A LA +GA I A+D Y P + +++A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD----------YNPEKLEKVVSSLKA- 54 Query: 68 ESEGRKVLARQADVRDSAALQQLVADGVEEFGRLDVVVANAGVLGWGRLWELTDEQWDTV 127 E R A ADVRDSAA+ ++ A E G +D++V AGVL G + L+DE+W+ Sbjct: 55 --EARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT 112 Query: 128 IGVNLSGTWRTLRAAVPAMIEAGNGGSIIVVSSSAGLKATPGNGHYAASKHGLVALTNTL 187 VN +G + R+ M GSI+ V S+ YA+SK V T L Sbjct: 113 FSVNSTGVFNASRSVSKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171 Query: 188 AIELGEYDIRVNSIHPYSVETPM-----IEPDVMMQVF-GEHPRFLHSFPPMPLQYKGLM 241 +EL EY+IR N + P S ET M + + QV G F P K L Sbjct: 172 GLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIP-----LKKLA 226 Query: 242 TSEEVSDVVVWLAGDGSGTLSGAQIPVDKGA 272 +++D V++L +G ++ + VD GA Sbjct: 227 KPSDIADAVLFLVSGQAGHITMHNLCVDGGA 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 93.5 bits (232), Expect = 5e-26 Identities = 34/203 (16%), Positives = 76/203 (37%), Gaps = 15/203 (7%) Query: 4 ESRAGRRPSTTKRHIADVAIDLFAARTFAEVSVDDVAQAAGIARRTLFRYYASKNAIPWG 63 + + T++HI DVA+ LF+ + + S+ ++A+AAG+ R ++ ++ K+ + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 64 DFDTHLAQLQDLLERIDGHVR--LGKALREALLAFNTYDESETIRHRQRMRIILQTAELQ 121 ++ + + +L LRE L+ +E R+ + I+ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTE--ERRRLLMEIIFHKCEF 119 Query: 122 AYSMTMYAGWRAVIAGFV----------ARRLSVKPTDLVPQTVAWTMLGVALSAYEHW- 170 M + + + + P DL+ + A M G E+W Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179 Query: 171 LSDESVSLPEALGNAFDVVGAGL 193 + +S L + + ++ Sbjct: 180 FAPQSFDLKKEARDYVAILLEMY 202
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 1e-16 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 4/146 (2%) Query: 27 SLLLVEDDRADAMLVEELIADAAVDIQVVWARSMAHAERELSAARPDCVLLDLNLPDASG 86 ++L+ +DD A ++ + ++ A D V + A R ++A D V+ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 87 IDALDRIANRDATVPVVVLTGLNDEYFGATAVAAGAQDYLVKGRVDPEM--LRRAMLYAI 144 D L RI +PV+V++ N A GA DYL K E+ + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 145 ERKRAELIAADLHATQLRARENALLE 170 +R+ ++L L R A+ E Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQE 148
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 28.4 bits (63), Expect = 0.049 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Query: 26 VLSIMGVMVLAGTVAGAVLLNRTDDVSRELSDNIEPARVAAFQLQ-----SALRDQESGI 80 +L +M +++L G AG VLL SR+ S AR A QL+ Q G+ Sbjct: 8 LLEMMLILLLMGVSAGMVLL--AFPASRDDSAAQTLARFEA-QLRFVQQRGLQTGQFFGV 64 Query: 81 R 81 Sbjct: 65 S 65
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 1e-13 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 10 ILLIEDDPGDELITREAFEHNKVNNRLHVAHDGEEGLDYLYQRGKYQQARRPDLILLDLN 69 IL+ +DD + +A + + + + ++ A DL++ D+ Sbjct: 6 ILVADDDAAIRTVLNQALS--RAGYDVRITSNAATLWRWI-------AAGDGDLVVTDVV 56 Query: 70 LPKYDGRQLLEKIKSDSELCRIPVVVLTTSSAEEDILRSYNLHANAYVTKPVDLDQFMTA 129 +P + LL +IK +PV+V++ + +++ A Y+ KP DL + + Sbjct: 57 MPDENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 130 VRQ 132 + + Sbjct: 115 IGR 117
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.5 bits (110), Expect = 2e-08 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 3/107 (2%) Query: 20 GAASRAQTRHLLLTAAAEEFARVGYVASTVSRIAEGAGVTVQTLYLAWGSKRALLRGYLE 79 +TR +L A F++ G ++++ IA+ AGVT +Y + K L E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 80 ---STLAPDAAPSGQHFAAQLQPDSPAGTLAQVSALVCDAARRSAIA 123 S + F + + + V + RR + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLME 111
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.9 bits (67), Expect = 0.020 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 3/109 (2%) Query: 289 PVQPTKPPKANEVKIDPPAQAKPPEQIVVPPGPDPVPAP---ADDWPVDEALPNPTDMPV 345 P QP ++PP +PP + VV P P+P P P + V E Sbjct: 46 PAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 105 Query: 346 VPFAGSPQLPGNTLADSFAGRGGGTGLSAGAPKLKPASFGGAGAASMRP 394 P Q + + P A+ + + Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 37.7 bits (87), Expect = 1e-04 Identities = 27/123 (21%), Positives = 34/123 (27%), Gaps = 6/123 (4%) Query: 184 PAAPSQRRDVQTGQPIEQEPAPPAPAQPVPVTPVIVPEAEQSTPGAAEPGWIPPAPAAMS 243 PA + VQ EP P P P V + +P P Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP------KPKPKPKPKPVKK 105 Query: 244 PVGQPMMPSSPAHPVPGSVAGPASPAPAAADGGAQGPVLRAAAARSAPGAGGRGNPMAPA 303 QP P P S +PA + + S P A R P PA Sbjct: 106 VQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPA 165 Query: 304 PSQ 306 +Q Sbjct: 166 RAQ 168
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.5 bits (172), Expect = 2e-16 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 10/191 (5%) Query: 3 LNGKTMFISGASRGIGLAIAKRAAQDGANIALIAKTAEPHPKLPGTVYTAAKELEEAGGQ 62 + GK FI+GA++GIG A+A+ A GA+IA + E K+ ++ A+ E Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE----- 60 Query: 63 ALPIVGDVRDPDSVSAAVAKTVEQFGGIDICVNNASAINLGSITEVPMKRFDLMNGIQVR 122 A P DVRD ++ A+ + G IDI VN A + G I + + ++ + Sbjct: 61 AFPA--DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST 118 Query: 123 GTYAVSQACIPHLKGRENPHILTL-SPPVQLDKKWLKPTAYMMAKFGMTLCALGIAEEMR 181 G + S++ ++ R + I+T+ S P + + AY +K + + E+ Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPR--TSMAAYASSKAAAVMFTKCLGLELA 176 Query: 182 DEGIASNTLWP 192 + I N + P Sbjct: 177 EYNIRCNIVSP 187
>adhesinb#Adhesin B signature. Length = 310 Score = 29.4 bits (66), Expect = 0.011 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 8/50 (16%) Query: 169 VEALEALPDTEIKEALQALPEEFRMAV-------YYADVEGFPYKEIAEI 211 VE L AL D E KE +P E +M V Y++ P I EI Sbjct: 178 VEKLSAL-DKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEI 226
>PF06580#Sensor histidine kinase Length = 349 Score = 44.9 bits (106), Expect = 5e-07 Identities = 37/225 (16%), Positives = 88/225 (39%), Gaps = 40/225 (17%) Query: 282 EVKRRDRALISKDATIREIHHRVK-----NNLQTVAALLRLQARRTTNAEGREALIESVR 336 E+ + A ++++A + + ++ N L + AL+ + ++ S+ Sbjct: 148 EIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALIL------EDPTKAREMLTSL- 200 Query: 337 RVSSIALVHDALSMSVDEQVNLDEVIDRILPIMNDVASVDRPIRIN--RVGD-LGV---L 390 L+ +L S QV+L + ++ VD +++ + D L + Sbjct: 201 ----SELMRYSLRYSNARQVSLAD----------ELTVVDSYLQLASIQFEDRLQFENQI 246 Query: 391 DSDRATALI--MVITELVQNAIEHAFDPAAQGA-VTIRAERSARWLDVVVHDDGRGLPSG 447 + + M++ LV+N I+H QG + ++ + + + V + G Sbjct: 247 NPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK- 305 Query: 448 FSLEKSDSLGLQIVRTLVSAEL--DGSLGMREAPGRGTDVVLRVP 490 + ++S GLQ VR + + + + E G+ ++ +P Sbjct: 306 -NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.6 bits (144), Expect = 3e-13 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 2 RAASTRERLVTEAMRLFGERGYHATSVAQIEAAAGLASGSGALYHHFDSKESLLEAGIDR 61 A TR+ ++ A+RLF ++G +TS+ +I AAG+ GA+Y HF K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT--RGAIYWHFKDKSDLFSEIWEL 65 Query: 62 QLDRRRAMGDLRA 74 + Sbjct: 66 SESNIGELELEYQ 78
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.039 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 12/122 (9%) Query: 83 SAAAAQAQQTATQARAAA-AAFEEAFAATVPPPLIAANRNQLVSLAAANTLGQNSPAIEA 141 + QA + + A +E A VPPP A + A Q S +E Sbjct: 999 TPNNIQADVPSVPSNNEEIARVDE---APVPPPAPATPSET--TETVAENSKQESKTVEK 1053 Query: 142 AQAEYAEMWAQDAAAMYSYAGASEAASMLTPFNQPSQTVDPAGPLTQAAAAAATNAQTAL 201 + + E AQ+ A EA S + Q ++ + T Sbjct: 1054 NEQDATETTAQNREV------AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 202 AQ 203 + Sbjct: 1108 KE 1109
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 45.4 bits (107), Expect = 2e-08 Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 1 MTREVERRPRDPAGRRQTIIEAAGRLIARHGLGDLTHRRVAAEADVPVGSTTYYFSDLGE 60 M R+ ++ ++ RQ I++ A RL ++ G+ + +A A V G+ ++F D + Sbjct: 1 MARKTKQEAQE---TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSD 57 Query: 61 LREAALAHVATSATDWLEH-WERDLDESTDIP-ATLARLTADYLTDPDRHRTLNELYVAA 118 L ++ + + + + L + +T+ R + ++ Sbjct: 58 LFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC 117 Query: 119 SHQPELQSLAQL 130 E+ + Q Sbjct: 118 EFVGEMAVVQQA 129
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 93.6 bits (232), Expect = 9e-25 Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 9/185 (4%) Query: 5 LITGCSTGLGRALAEAVIDAGHHTVATARSVGGVADLVQ------RSPERVLPLALDITE 58 ITG + G+G A+A + G H A + + +V R E D+ + Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA---FPADVRD 68 Query: 59 PDQITAAVQAAQQRFGGIDVLVNNAGYGYRAAVEEGDDAEVRDLFETHFFGTVALIKAVL 118 I ++ G ID+LVN AG + D E F + G ++V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PDMRARRSGAIVNISSIAVALTPVGSGYYAAAKAAMEGMSGALHGELAPLGISVTVVEPG 178 M RRSG+IV + S + YA++KAA + L ELA I +V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 AFRTD 183 + TD Sbjct: 189 STETD 193
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 67.5 bits (165), Expect = 2e-14 Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 68/376 (18%) Query: 3 VGIDFGTTHTVAAVVDRGNYPVVSFDGVDAWPSAIAANAAGE------LRFGLDATA-VR 55 + ID GT +T+ V +G V PS +A G DA + Sbjct: 13 LSIDLGTANTLIYVKGQGI--------VLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLG 64 Query: 56 RDPGWSVLRSFKRLLNDAGPHTEVSLAGRSYRLTELLARFLEQLKDDLQHRSNAGLTPGE 115 R PG R + D G + + ++L F++Q+ SN+ + P Sbjct: 65 RTPGNIAA---IRPMKD-GVIADFFVT------EKMLQHFIKQVH------SNSFMRPSP 108 Query: 116 PVEAAISVPANASSAQRFLTLDAFVAAGFQVVALLNEPSAASLEYAHRYRSTITAKREYV 175 V + VP A+ +R ++ AG + V L+ EP AA++ ++ + Sbjct: 109 RV--LVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP----VSEATGSM 162 Query: 176 VIYDLGGGTFDASLLKMTGHVNDVVRSEGIQRLGGDDFDEAILQLVAARLP-EIAELAAT 234 V+ D+GGGT + +++ + G VV S + R+GGD FDEAI+ V I E A Sbjct: 163 VV-DIGGGTTEVAVISLNG----VVYSSSV-RIGGDRFDEAIINYVRRNYGSLIGEATAE 216 Query: 235 DVTGYDVLREECAARKEAVG---PQTRRFLMDLTGI----GGDRPPFSCDIDDVYSACAP 287 + K +G P +++ G G R F+ + +++ A Sbjct: 217 RI-------------KHEIGSAYPGDEVREIEVRGRNLAEGVPR-GFTLNSNEILEALQE 262 Query: 288 LVDDTIGVLSRVLRDPAPGGDGVAWSEVAGIYLAGGAGSFPLISRMLRATFGDKRVKRSP 347 + + + L P + + G+ L GG + R+L G V + Sbjct: 263 PLTGIVSAVMVALEQCPP--ELASDISERGMVLTGGGALLRNLDRLLMEETG-IPVVVAE 319 Query: 348 HAFAATAIGLAVFLDH 363 A G L+ Sbjct: 320 DPLTCVARGGGKALEM 335
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.036 Identities = 44/182 (24%), Positives = 66/182 (36%), Gaps = 20/182 (10%) Query: 114 DYVPTDRRVVFGHHFAAIAGAGPLVGPVLATQMGYLPGTIWIVAGAVFAGCVHDYLVLWI 173 D D R +A G G + GPVL MG A A G + Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 174 --STRRRGRSLGQMVRDEL------GATAGVAALIGVPVIITIIIAV-LALVVVRALSQS 224 S + R L + + L VAAL+ V I+ ++ V AL V+ + Sbjct: 182 PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 225 PWGVFSIAMTIPI---------ALFMGCYLRFLRPGRVAEVSVI--GIGLLLLAVVSGGW 273 W +I +++ A+ G L R + +I G G +LLA + GW Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 274 VA 275 +A Sbjct: 302 MA 303
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 26.7 bits (59), Expect = 0.006 Identities = 6/21 (28%), Positives = 12/21 (57%) Query: 36 SSRLGWRLEVNDGGQWAFFDD 56 RL W ++ DG ++ +D+ Sbjct: 29 KDRLNWAVQCTDGMEFDQYDN 49
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 34.3 bits (78), Expect = 0.001 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 112 GEVLEIVAPVADALDYAHQRGLVHGDVKPADIVMTNAGEGQPRILLKGFGIAAPHGAPGD 171 G + I + D ++ + G+VH D+KP ++V A G+P ++ G + G Sbjct: 245 GTIKFIAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRA-SGEPVVIDLGLHSRSGEQPKGF 303 Query: 172 ATGFVAPEQLTG-AEADGRSDQYALAATAMILLTG 205 F APE G A +SD + + +T + + G Sbjct: 304 TESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEG 338
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.8 bits (75), Expect = 0.005 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 15/88 (17%) Query: 4 DVIIRDGLWFDGTGSAPQTRTLGIRDGVVATVSAGPLDETGCAQVIDAAGKWVMPGFIDV 63 D+ ++DG G A GV V G +VI GK V G +D Sbjct: 87 DIGLKDGRIA-AIGKAGNPDMQ---PGVTIIVGPG-------TEVIAGEGKIVTAGGMDS 135 Query: 64 HTHYDAEVLLDPGLRESVRHGVTTVLLG 91 H H+ ++ E++ G+T +L G Sbjct: 136 HIHFICPQQIE----EALMSGLTCMLGG 159
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 6e-09 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 1 MARTQQQRREETVARLLQASIDTIVEVGYARASAAIITKRAGVSVGALFRHFETMGDFMA 60 MAR +Q +ET +L ++ + G + S I K AGV+ GA++ HF+ D + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ATAYEVLRRQLDIFTKQVAEIPAD-RPALEAAL 92 ++ + A+ P D L L Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREIL 93
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 35.9 bits (83), Expect = 1e-04 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 48 DLDTGQVLAGRDQNVTHPPASTIKVLLALVALDELD-----LNSTVVADEADTHVECNCV 102 DL +G+ L + P ST KV+L L +D L + + D V+ + V Sbjct: 46 DLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDL-VDYSPV 104 Query: 103 GVK-AGHTYTARQLLDGLLLVSGNDAANTLAQMLGGQDA 140 K T +L + +S N AAN L +GG Sbjct: 105 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAG 143
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 33.1 bits (75), Expect = 0.005 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 612 DELGTAGPVVTSAGAWPAAPGDPLLASVRDQVAAVFGIRAARVDIDQPLSEQGLDSVGFV 671 D+L A V A ++R Q+A + + + L ++GLDSV + Sbjct: 208 DQLQNAPADVQKTSANTGKKNVFTCENIRKQIAELLQETPEDITDQEDLLDRGLDSVRIM 267 Query: 672 KLASRLSQAFDRDVPPVDVFNHPTVR 697 L + + +V V++ PT+ Sbjct: 268 TLVEQWRRE-GAEVTFVELAERPTIE 292
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 41.7 bits (98), Expect = 2e-05 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 35/216 (16%) Query: 204 AAVIFIMLLLVYRSPLTVVLLLLTVGAEFTVARGVVALLGQVGAIALSTFAVSLLT---- 259 ++F+++ L ++ ++ + V V LLG +A ++++ LT Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAV---------PVVLLGTFAILAAFGYSINTLTMFGM 398 Query: 260 SLAIAAGTDYGIFIIGRYQEARQAGEDRETAFYTMYRGVAHVIAGSGLTIAGATSCLSLA 319 LAI D I ++ + ED+ + ++ + + G LS Sbjct: 399 VLAIGLLVDDAIVVVENVERVMM--EDKLPPKEATEKSMSQI----QGALVGIAMVLSAV 452 Query: 320 RLP----------YFRTLGIPCAVGMLLAVVVALTLGPAVLAIGSRFGVFDPKRMIK--- 366 +P +R I M L+V+VAL L PA+ A + + Sbjct: 453 FIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFF 512 Query: 367 ---IRGWRRIGTVVVRWPGPVLAATIAIALIGLLAL 399 + G +L +T LI L + Sbjct: 513 GWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIV 548 Score = 38.3 bits (89), Expect = 2e-04 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 14/162 (8%) Query: 768 LIAGIASLCLIFIIMLILTRALIAATVIVGTVALSLGASFGLSVLVWQHIFGIKLHWLVL 827 L I L+F++M + + + A + V + L +F + FG ++ L + Sbjct: 344 LFEAIM---LVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAA-----FGYSINTLTM 395 Query: 828 PMSVIVLLAVGSDYNLLL--VSRFKQEIGAGLNTGIIRAIGGTGKVVTNAGLVFAIT--- 882 V+ + + D +++ V R E +++ + +V + Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIP 455 Query: 883 MASMIVSDLRIIGQVGTTISLGLLFDTLIVRAFMTPSIAALL 924 MA S I Q TI + +++V +TP++ A L Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMAL-SVLVALILTPALCATL 496 Score = 34.0 bits (78), Expect = 0.003 Identities = 48/235 (20%), Positives = 85/235 (36%), Gaps = 39/235 (16%) Query: 140 YVQLNLAGNQGEPLGNESVEAVRSIVDGA--KPPPGIAVYVTGTAALVADMQHSGDRSLA 197 Y L QGE S ++++ K P GI TG + + SG+++ A Sbjct: 818 YNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSY---QERLSGNQAPA 874 Query: 198 RITVTTAAVIFIMLLLVYRSPLTVVLLLLTVGAEFTVARGVVALLGQVGAIALSTFAVSL 257 + ++ V+F+ L +Y S V ++L V L Q + F V L Sbjct: 875 LVAIS-FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY---FMVGL 930 Query: 258 LTSLAIAAGTDYGIFIIGRYQEARQA-GEDRETAFY---------------TMYRGVAHV 301 LT++ ++A I I+ ++ + G+ A GV + Sbjct: 931 LTTIGLSAKN--AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPL 988 Query: 302 IAGSGLTIAGATSCLSLARLPYFRTLGIPCAVGMLLAVVVALTLGPAVLAIGSRF 356 +G AG+ + +GI GM+ A ++A+ P + R Sbjct: 989 AISNG---AGSGA---------QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 150 bits (379), Expect = 3e-42 Identities = 89/412 (21%), Positives = 173/412 (41%), Gaps = 18/412 (4%) Query: 17 HRDTLWAIAIGIFMTSVDDTVVYVANPSIMAGLNTSYHMVIWVTSGYVLAYTVPSLVAGR 76 H L + I F + +++ V+ V+ P I N WV + ++L +++ + V G+ Sbjct: 12 HNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71 Query: 77 LGDRFGVKNLYLAGLAVFTVSSLWCGVSGT-IEILIAARVAQGIGAALLYTQTFTIVTRA 135 L D+ G+K L L G+ + S+ V + +LI AR QG GAA +V R Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 136 FPPERRGAAATVWAAAAGFGNLVGPLLGGALVDTLGWQWIFFVNIPVGIVGLVLAVRFVP 195 P E RG A + + G VGP +GG + + W ++ + + + I+ + ++ + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLK 190 Query: 196 ALPTHARRFDLIGVGLSGLGLLLIVFGLQQGHAAGWSPWIWAMIAVGVGFVTVFVYWQSV 255 FD+ G+ L +G++ + + + + V V +FV Sbjct: 191 KEVRIKGHFDIKGIILMSVGIVFFMLFTTS--------YSISFLIVSVLSFLIFVKHIR- 241 Query: 256 NTSEPLIPLRIFGDRNFALCSF--GVAVIAFVAAAMMLPGVFYMQTVRGLSP-TRTALLM 312 ++P + + + F + G+ M+P + M+ V LS ++++ Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVP--YMMKDVHQLSTAEIGSVII 299 Query: 313 APLPIVVGLLTPFIGKILDRAHPRAVAGFGFSVVAISLIWFSIEMAPATPVWRLAVPIAF 372 P + V + G ++DR P V G + +++S + + T W + + I F Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS--FLTASFLLETTSWFMTIIIVF 357 Query: 373 LGVGMVFAWPVLTVTATRDLPAELVGASSGVYNAARALGATLGSAGMAALMT 424 + G+ F V++ + L + GA + N L G A + L++ Sbjct: 358 VLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.004 Identities = 30/145 (20%), Positives = 48/145 (33%), Gaps = 16/145 (11%) Query: 31 VLIRGEKGTAKSTAVRGLAALLSAATGSSGPGLVEMPLGATEDRVVGSLDLQRVLR---D 87 ++I GE GT K R L G V + + A ++ S +L + Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGP----FVAINMAAIPRDLIES-ELFGHEKGAFT 217 Query: 88 GEHAFAPGLLARAHGGVLYVDEVNLLHDHLVDILLDAAAMGRVHVERDGISHSHEARFVL 147 G + G +A GG L++DE+ + LL G G + + Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRI 275 Query: 148 IGTMNP------EEGELRPQLLDRF 166 + N +G R L R Sbjct: 276 VAATNKDLKQSINQGLFREDLYYRL 300
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.3 bits (221), Expect = 3e-23 Identities = 84/269 (31%), Positives = 124/269 (46%), Gaps = 23/269 (8%) Query: 9 LSGRVAFITGAARGQGRAHALRLARDGADVIAVDLCDQIASVPYPLGTAEELATTVKLVE 68 + G++AFITGAA+G G A A LA GA + AVD E+L V ++ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDY------------NPEKLEKVVSSLK 53 Query: 69 DTGARIVASQADVRDREALAAALQAGIDELGQVDIVVANAGIAPM----QSGDDGWRDVI 124 A ADVRD A+ E+G +DI+V AG+ D+ W Sbjct: 54 AEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATF 113 Query: 125 DVNLSGAYYTVEVAIPTMIEQGRGGSIVLISSAAGLVGISSADAGAIGYAASKHALVGLM 184 VN +G + M+++ R GSIV + S V +S A YA+SK A V Sbjct: 114 SVNSTGVFNASRSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAA----YASSKAAAVMFT 168 Query: 185 RVYANLLAPHSIRVNSLHPSGVDTPMINNEFIRRWLADLVAETGSGPGAGNALPV-QILQ 243 + LA ++IR N + P +T M + + A+ V + GS +P+ ++ + Sbjct: 169 KCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIK-GSLETFKTGIPLKKLAK 227 Query: 244 ADDIAGALAWLVSDEARYITGVALPVDAG 272 DIA A+ +LVS +A +IT L VD G Sbjct: 228 PSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 32.9 bits (75), Expect = 0.005 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 8/100 (8%) Query: 152 PIVLAGTAI----VLMRTEPNPDTRPRLILGSSLIALSFLGLRHLWAGSPESPELRQRAA 207 P+V TA+ V M P T L+L L+AL+F+ L + P+ L Sbjct: 111 PLVELLTALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLL--PDQLTLPLLWG 168 Query: 208 GFIGFTIGGPLSDGLTVWIAAP--LLFIGALFGLLLLTGT 245 G + +GG +S G V A L+ + LLTG Sbjct: 169 GLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGK 208
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 3e-06 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 58 IQGNVIGCGALHVLWSDLGEVRTVAVDPAMTGHGIGHAIVDRLLEVARELQLERLFVLTF 117 ++ N IG + W+ + +AV G+G A++ + +E A+E L + T Sbjct: 72 LENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQ 131 Query: 118 ET-----EFFTAHGFT 128 + F+ H F Sbjct: 132 DINISACHFYAKHHFI 147
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.002 Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 11/230 (4%) Query: 24 ADPKVQIQQAIEEAQRTHQALTQQA--AQVIGNQRQLEMRLNRQLADIEKLQVNVRQALT 81 + Q ++ +EA+ +A TQ AQ ++ + ++ A +EK + + + Sbjct: 1059 TETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE---KAKVE 1115 Query: 82 LADQATAAGDAAKAVEYNNAAEAFAAQLVTAEQSVEDLKALHDQAL-NAAAQAKRAVEQN 140 ++ +E Q A ++ + Q+ N A ++ ++ Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175 Query: 141 SMVLQQKIAERTKLLSQLEQAKMQEQVSSSLRSMSELAAPGNVPSLDEVRDKIERRYATA 200 S ++Q + E T + + + E + + + + N P + R + R + Sbjct: 1176 SSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP---KNRHRRSVR--SV 1230 Query: 201 LGQAELAQSSVQGRMLEVQQAGVQMAGHSRLEQIRASMRGESLPAGGAAT 250 E A +S R ++ L RA + +L G A + Sbjct: 1231 PHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVS 1280
>PF06580#Sensor histidine kinase Length = 349 Score = 24.4 bits (53), Expect = 0.039 Identities = 5/23 (21%), Positives = 9/23 (39%) Query: 4 GVRLTEFHERITLRFGAAYGASV 26 G L ER+ + +G + Sbjct: 312 GTGLQNVRERLQMLYGTEAQIKL 334
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 38.9 bits (90), Expect = 9e-06 Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 221 RNSCCLYYRLPGAGKCGDCPL 241 R +CC YRLP +CGDC L Sbjct: 241 RRTCCQRYRLPDVQQCGDCTL 261
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 29.8 bits (67), Expect = 0.016 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 11/88 (12%) Query: 48 SDPHRFGRVDDDGTVWLITTAGERIVGSWQAGDA------EAAFAHFGRRFDDLNTEITL 101 +D F + D++ T +L ++ S + + F + F ++N Sbjct: 39 TDGMEFDQYDNNNTTYLFGIKDNTVICSLRFIETKYPNMITGTFFPY---FKEINIPEGN 95 Query: 102 MEE--RLAAGTGDARKIRANAAALAETL 127 E R A+ I N ++ L Sbjct: 96 YLESSRFFVDKSRAKDILGNEYPISSML 123
>PERTACTIN#Pertactin signature. Length = 922 Score = 37.0 bits (85), Expect = 2e-04 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 13/89 (14%) Query: 352 LFDASTSSWGDLTAAPPPQAPPAPPTPPTPPVPPTPPQPPKQTSDTSPSGPGPHSLAARL 411 L A P PQ P PP PP PP PP PPQPP++ P P P A R Sbjct: 562 LVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQ----PEAPAPQPPAGR- 616 Query: 412 RNPWMLLGAAALVALI---VFAAQGIWLS 437 L AAA A+ V A +W + Sbjct: 617 -----ELSAAANAAVNTGGVGLASTLWYA 640
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 1e-04 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 144 AVLARLVARLARDVQPVPAPAYAAYAPEADQTAEEEPQDEPESKDPKSKDEATEEEAPKE 203 +V + D PVP PA A + + AE Q+ + K++ +ATE A Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE--KNEQDATETTAQNR 1066 Query: 204 PEASEAEAETE 214 A EA++ + Sbjct: 1067 EVAKEAKSNVK 1077
>cloacin#Cloacin signature. Length = 551 Score = 43.9 bits (103), Expect = 2e-06 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 535 TGGTASSSNTGPTPSAGTGGGGTGGGGGGGASASGAVGGTGGG--GGGGGAGAAAGTGAV 592 +GG NTG ++G GG G G GG ++ G+ + GGG G+G G G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 593 GGGGGGGGAAGGAGGTAGNGGAGGNAIAFAGSTSFSSASGGAG 635 G GGG G +GG GT GN A +AF + +GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 42.0 bits (98), Expect = 8e-06 Identities = 35/115 (30%), Positives = 44/115 (38%) Query: 506 GGGGAGGHGGNGGGNGALGGQGGTGGTGGTGGTASSSNTGPTPSAGTGGGGTGGGGGGGA 565 GG G G + G +G + G G GG S ++ P G G G GGG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 566 SASGAVGGTGGGGGGGGAGAAAGTGAVGGGGGGGGAAGGAGGTAGNGGAGGNAIA 620 G G +GGG G GG +A G G + + GA AIA Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 40.9 bits (95), Expect = 2e-05 Identities = 36/113 (31%), Positives = 46/113 (40%) Query: 455 GNGGAGGNGGAPGAANAIGGQGGQGGIGGNGGNGGNNTSGIDTAVGYAGGGGGGGAGGHG 514 G G G N GA + I G G+GG +G +S + G +G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 515 GNGGGNGALGGQGGTGGTGGTGGTASSSNTGPTPSAGTGGGGTGGGGGGGASA 567 GNGGGNG GG GTGG + + G GG G ++A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 39.7 bits (92), Expect = 4e-05 Identities = 37/116 (31%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Query: 509 GAGGHGGNGGGNGALGG-QGGTGGTGGTGGTASSSNTGPTPSAGTGGGGTGGGGGGGASA 567 G G G N G + G GG G G GG + S + GG G+G GGG+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 568 SGAVGGTGGGGGGGGAGAAAGTGAVGGGGGGGGAAGGAGGTAGNGGAGGNAIAFAG 623 G GGG G G + A G + GAGG A + AG + A A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 39.7 bits (92), Expect = 4e-05 Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 3/101 (2%) Query: 552 TGGGGTGGGGGGGASASGAVGGTGGGGGGGGAGAAAGTGAVG---GGGGGGGAAGGAGGT 608 +GG G G G +++ GG G G GGGA +G + GGG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 609 AGNGGAGGNAIAFAGSTSFSSASGGAGGTGAPGGTGGGGGG 649 GNGG GN+ +G+ SA G P + G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 38.5 bits (89), Expect = 1e-04 Identities = 31/89 (34%), Positives = 35/89 (39%) Query: 363 GGIGTGGNGGLGGNGGAGSIGTTGTDGTAPTTGGPGGAGGAGGDGGAGGAGIGGVGGGSG 422 GG G G N G G + G TG + G G + GG G+GI GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 423 GNGGLGGNGGAGGHGGINTGTGGTASASG 451 GNGG GN G G G N A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 35.5 bits (81), Expect = 7e-04 Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 5/108 (4%) Query: 500 GYAGGGGGGGAGGHGGNGGGNGALGGQGGTGGTGGTGGTASSSNTGPTPSAGTGGGGTGG 559 G+ G +GG G G G+G + S +G G+G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 560 GGGGGASASGAVGGTGGGGGGGGAGAAAGTGAVGGGGGGGGAAGGAGG 607 G G + GTGG A A G A+ G GG A + G Sbjct: 68 NGNSGGGS-----GTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 34.7 bits (79), Expect = 0.002 Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 17/128 (13%) Query: 427 LGGNGGAGGHGGINTGTGGTASASGGTGGNGGAGGNGGAPGAANAIGGQGGQGGIGGNGG 486 + G G G + G ++ +G G G GGA G N GG G G G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 487 NGGNNTSGIDTAVGYAGGGGGGGAGGHGGNGGGNGALGGQGGTG----GTGGTGGTASSS 542 GN GGG G +GG G GG A+ G T G GG A S Sbjct: 61 GHGN-------------GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSI 107 Query: 543 NTGPTPSA 550 + G +A Sbjct: 108 SAGALSAA 115 Score = 34.3 bits (78), Expect = 0.002 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 399 GAGGAGGDGGAGGAGIGGVGGGSGGNGGLGGNGGAGGHGGINTGTGGTASASGGTGGNGG 458 G G G + GA G + GG G G GG G N GG + + GG G Sbjct: 3 GGDGRGHNTGAHSTS-GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 459 AGGNGGAPGAANAIGGQGG 477 G GG + G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80 Score = 33.9 bits (77), Expect = 0.002 Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 132 GTGAAGGDGGWLVGNGGNGGSGAPGQAGGAGGSAGLWGAGGAGGAGGSATTPGGAGGAGG 191 G G G NGG G GGA +G W + GGS + GG+G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSGH 62 Query: 192 TGGANGLIGGGNGGVGGAGGAGAAGGAGAVGSTAQAGGAG 231 G GG G GG A AA A + + G G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.5 bits (76), Expect = 0.003 Identities = 27/76 (35%), Positives = 35/76 (46%) Query: 419 GGSGGNGGLGGNGGAGGHGGINTGTGGTASASGGTGGNGGAGGNGGAPGAANAIGGQGGQ 478 GG G G + +G G TG G AS G+G + GG G+ GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 479 GGIGGNGGNGGNNTSG 494 G GGNG +GG + +G Sbjct: 63 GNGGGNGNSGGGSGTG 78 Score = 32.8 bits (74), Expect = 0.006 Identities = 25/71 (35%), Positives = 31/71 (43%) Query: 624 STSFSSASGGAGGTGAPGGTGGGGGGGPLASTLSIDAGNGADGVNGGTGGTGTTSGGSGG 683 +T S SG G G GGG G S+ + G G+ GG+G +GG G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 684 TGGGAGGQGGN 694 GG G GGN Sbjct: 70 NSGGGSGTGGN 80 Score = 32.4 bits (73), Expect = 0.007 Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Query: 479 GGIGGNGGNGGNNTSGIDTAVGYAGGGGGGGAGGHGGNGGGNGALGGQGGTGGTGGTGGT 538 GG G G ++TSG G GGG + G G + N GG G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG- 61 Query: 539 ASSSNTGPTPSAGTGGGGTGGGGGGGASASGAVGGTGGGGGGGGAGAA 586 G G GGG+G GG A A+ G G G A Sbjct: 62 -----HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.5 bits (68), Expect = 0.024 Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 9/110 (8%) Query: 258 AGADGAAGTLGSAGVTGQIGGFGGAGGTGGAGGADQSLIGGSSGGGGAGGLGGAGGLGGN 317 +G DG G+ +G I G G GG G S G G + GG G+ Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGG---------GASDGSGWSSENNPWGGGSGS 52 Query: 318 GGDATGFGMTGGDGAMGGAGGAAGAAGAAGAVTVPVNFLAHAGSDGGIGT 367 G G G G G +GG +G G AV PV F A S G G Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.1 bits (67), Expect = 0.031 Identities = 32/113 (28%), Positives = 40/113 (35%), Gaps = 14/113 (12%) Query: 595 GGGGGGAAGGAGGTAGNGGAGGNAIAFAGSTSFSSASGGAGGTGAPGGTGGGGGGGPLAS 654 GG G G GA T+GN G +G G GA G+G P Sbjct: 3 GGDGRGHNTGAHSTSGNINGG--------------PTGLGVGGGASDGSGWSSENNPWGG 48 Query: 655 TLSIDAGNGADGVNGGTGGTGTTSGGSGGTGGGAGGQGGNSFQFVPSAAGGAG 707 G +G GG G + GGSG G + +F F + GAG Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.5 bits (87), Expect = 3e-04 Identities = 51/252 (20%), Positives = 77/252 (30%), Gaps = 77/252 (30%) Query: 780 TVLLTGATGFLGRYLALEWLERMDLV-------DGKLICLVRA-------------KSDT 819 L+TGA GF+G +++ LE V D + L +A K D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 820 EARARLDKTFDSGDPELLAHYRALAGDHLEVLAGDKGEADLGLDRQTWQRLADTVDLIVD 879 R + F SG E + R + + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLA-----------------VRYSLE----------N 94 Query: 880 PAALVNHVLPYSQLFGPNALGTAELLRLALTSKIKPYSYTSTIGVADQIPPSAFTEDADI 939 P A + N G +L +KI+ Y S+ V F+ D + Sbjct: 95 PHAYAD----------SNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSV 144 Query: 940 RVISATRAVDDSYANGYSNSKWAGEVLLREAHDLCGLPVAVFRCDMILADTTWAGQLNVP 999 D + Y+ +K A E++ L GLP R T G P Sbjct: 145 ----------DHPVSLYAATKKANELMAHTYSHLYGLPATGLRF------FTVYGPWGRP 188 Query: 1000 DM----FTRMIL 1007 DM FT+ +L Sbjct: 189 DMALFKFTKAML 200
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 56.8 bits (137), Expect = 1e-10 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 24/197 (12%) Query: 386 QLANVLKYGSLPLSFESSEAQTVSATLGLTSLRAGLIAGAIGLALVLLY-SLLYYRVLGL 444 ++ L L S E +V + + + + +++ Y + + L Sbjct: 123 KVETALTAVDPALKITSFE--SVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFAL 180 Query: 445 LTALSLIASGAMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIRE 504 ++L+ + + +L + L +A L+ G + + VV F+R+++ + + Sbjct: 181 GAVVALVHDVLLTVGLFAVLQLKFD----LTTVAALLTITGYSINDTVVVFDRLRENLIK 236 Query: 505 GRSFR------SAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTIL 558 ++ +V +R T ++ T LA + ++GF F + Sbjct: 237 YKTMPLRDVMNLSVNETLSRTVMTGMT----TLLALVPMLIWGGDVIRGFVFAM------ 286 Query: 559 DIVVVFLVTWPLVYLAS 575 + VF T+ VY+A Sbjct: 287 -VWGVFTGTYSSVYVAK 302 Score = 36.4 bits (84), Expect = 2e-04 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 12/126 (9%) Query: 14 LSVFLVLLIGVYLLVF-LTGDKKAAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQ 72 ++ +++ + LV L GID +GGT + + T R AL + + Sbjct: 26 AAIVMMIASVILPLVIGLN--------FGIDFKGGTTIRTESTTAIDVGVYRAAL-EPLE 76 Query: 73 IISARVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRPVMNSM-PAQPAA 131 + ++ + S ++ DG A G + + V ++ PA Sbjct: 77 LGDVIISEVR-DPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDPAL 135 Query: 132 QEPQQE 137 + E Sbjct: 136 KITSFE 141
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 258 bits (660), Expect = 5e-85 Identities = 75/310 (24%), Positives = 146/310 (47%), Gaps = 20/310 (6%) Query: 60 FEVVGRRKLWYGISGAIMAIAILSIIVRGFTFGIDFKGGTTVSFP----------RGDSQ 109 F+ + +G + +M +++ +V G FGIDFKGGTT+ R + Sbjct: 14 FDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALE 73 Query: 110 VTQVEEVFHNVVGSDPESVVTVGSGASATVQIRSETLSNEQTEKLRDALFDAFHPKGADG 169 ++ +V + V S A +Q++ + E L + Sbjct: 74 PLELGDVIISEVRD--PSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAV 131 Query: 170 KPSKKAISDAAVSETWGGQITKKAVIALVVFLVLVAIYITVRYERYMTISAIAAMIFDLT 229 P+ K S +V G++ AV +L+ V++ YI VR+E + A+ A++ D+ Sbjct: 132 DPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVL 191 Query: 230 VTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANL 289 +T G+++++ + TV LLTI G+S+ DTV+VFD++ EN ++ R + NL Sbjct: 192 LTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLR---DVMNL 248 Query: 290 AVNQTFMRSINTSLISVLPVLSLMVVAVWLLGVGTLKDLALVQLIGIIVGTYSSIFFATP 349 +VN+T R++ T + ++L ++ +++ G ++ + G+ GTYSS++ A Sbjct: 249 SVNETLSRTVMTGMTTLLALVPMLI-----WGGDVIRGFVFAMVWGVFTGTYSSVYVAKN 303 Query: 350 LLVTLRERTE 359 +++ + Sbjct: 304 IVLFIGLDRN 313
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 29.9 bits (67), Expect = 0.020 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 82 ARDRVLSARGLDVLLTDLEKQQALMAEVADDAARDRAIRRYGQLEERFVALGG 134 D ++ GLD L D E+ + M +AD + R GQ ++ ++ GG Sbjct: 220 DNDMAVALNGLD--LRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYMEFGG 270
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 2e-16 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 14/177 (7%) Query: 1 MPKVSEDHLAARRRQILDGARRCFAEYGYDKATVRRLEQAIGMSRGAIFHHFRDKDALFF 60 M + ++ R+ ILD A R F++ G ++ + +A G++RGAI+ HF+DK LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ALAHEDAERMADVAS--------------REGLIQVMRDMLAAPDQFDWLATRLEIARKL 106 + + ++ RE LI V+ + + + + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 107 RNDPEFSRGWAERSAELAAATTDRLRRQKQANRVRDDVPNEVLQCYLDLVLDGLVAR 163 + E L+ +A + D+ + + GL+ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 53.9 bits (129), Expect = 7e-10 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 8/195 (4%) Query: 44 DSIAALIADVARANQRLDDLSAAVELEQEGVNKAMVAVETARDEAAAAEHELEASQQAVK 103 AAL A A + L+ + + A E LE + Sbjct: 218 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 277 Query: 104 DANAAIAAAQHRFD----TFAAATYMNGPSDSYLTATSPDEIIAAATAAKTLAASAQTVM 159 +A I + A + + ++ + D + A+ A K L A Q + Sbjct: 278 ADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD-LDASREAKKQLEAEHQKLE 336 Query: 160 ANL---ERARTRQVNKESASRLAKQKADKAAEEAKTSQDAAVTALTDTQRKFDQQREEVN 216 E +R ASR AK++ + ++ + + + +R D RE Sbjct: 337 EQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 396 Query: 217 RLAAERDEAEAKLQA 231 ++ +EA +KL A Sbjct: 397 QVEKALEEANSKLAA 411 Score = 48.9 bits (116), Expect = 3e-08 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 8/194 (4%) Query: 46 IAALIADVARANQRLDDLSAAVELEQEGVNKAMVAVETARDE-------AAAAEHELEAS 98 AAL A A + L+ + + A + A Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 99 QQAVKDANAAIAAAQHRFDTFAAATYMNGPSDSYLTATSPDEIIAAATAAKTLAASAQTV 158 +K A AA + R A + +A + A A + A + Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI-KTLEAEKAALEAEKADLEHQ 303 Query: 159 MANLERARTRQVNKESASRLAKQKADKAAEEAKTSQDAAVTALTDTQRKFDQQREEVNRL 218 L R ASR AK++ + ++ + + + +R D RE +L Sbjct: 304 SQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQL 363 Query: 219 AAERDEAEAKLQAA 232 AE + E + + + Sbjct: 364 EAEHQKLEEQNKIS 377 Score = 42.7 bits (100), Expect = 2e-06 Identities = 55/257 (21%), Positives = 85/257 (33%), Gaps = 31/257 (12%) Query: 44 DSIAALIADVARANQRLDDLSAAVELEQEGVNKAMVAVETAR-------DEAAAAEHELE 96 I L A+ A R +L A+E ++T E A EH+ + Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ 305 Query: 97 ASQQAVKDANAAIAAAQHRFDTFAA----ATYMNGPSDSYLTATSPDEIIAAATAAKTLA 152 + + A++ A N S++ + D + A+ AK Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD--LDASREAKKQL 363 Query: 153 ASAQTVMANL----ERARTRQVNKESASRLAKQKADKAAEEAKTSQDAAVTALTDTQRKF 208 + + E +R ASR AK++ +KA EEA + A + + Sbjct: 364 EAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESK 423 Query: 209 DQQREEVNRLAAERDEAEAKL-------QAARLVAWSSAGAEGPPPGAMWDPGARPGN-G 260 +E L A+ EAEAK QA L + A P A+PGN Sbjct: 424 KLTEKEKAELQAKL-EAEAKALKEKLAKQAEELAKLRAGKASDSQT-----PDAKPGNKA 477 Query: 261 RRWDGWDPTLPQIPSAN 277 G P P+ N Sbjct: 478 VPGKGQAPQAGTKPNQN 494 Score = 37.7 bits (87), Expect = 9e-05 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 4/196 (2%) Query: 38 NADSRTDSIAALIADVARANQRLDDLSAAVELEQEGVNKAMVAVETARDEAAAAEHELEA 97 A + + + +A I + L+ A +E E AM + E E A Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALE---GAMNFSTADSAKIKTLEAEKAA 222 Query: 98 SQQAVKDANAAIAAAQHRFDTFAAATYMNGPSDSYLTATSPDEIIAAATAAKTLAASAQT 157 D A+ A + +A + L A E+ A A + + Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA-ELEKALEGAMNFSTADSA 281 Query: 158 VMANLERARTRQVNKESASRLAKQKADKAAEEAKTSQDAAVTALTDTQRKFDQQREEVNR 217 + LE + +++ Q + + + DA+ A + + + E+ Sbjct: 282 KIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 341 Query: 218 LAAERDEAEAKLQAAR 233 A R L A+R Sbjct: 342 SEASRQSLRRDLDASR 357
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.003 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 23/153 (15%) Query: 48 IVGQD----QLVERMLVGLLAKGHVLLEGVPGVAKTL---AVETFARVVGGSFARIQ--- 97 +VG+ ++ + + +++ G G K L A+ + + G F I Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198 Query: 98 FTPDLVPTDIVGTRIYRQGKEEFDTELGPVVANF-------LLADEINRAPAKVQSALLE 150 DL+ +++ G K F F L DEI P Q+ LL Sbjct: 199 IPRDLIESELFGHE-----KGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLR 253 Query: 151 VMAERHVS-IGGKTFPMPNPFLVMATQNPIEQE 182 V+ + + +GG+T + +V AT ++Q Sbjct: 254 VLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (279), Expect = 9e-32 Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 21/252 (8%) Query: 24 RSVLVTGGNRGIGLAIAQRLAADGHRVAVTHRGSGAPEGLFGVE-----------CDVTD 72 + +TG +GIG A+A+ LA+ G +A E + DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 73 NDAVDRAFKEVEEHQGPVEVLVSNAGLSADAFLIRMTEERFEKVIDANLTGAFRVAQRAS 132 + A+D +E GP+++LV+ AG+ + +++E +E N TG F ++ S Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 133 RSMQRKKFGRLIFIGSVSGSWGIGNQANYAASKAGVIGMARSIARELSKVNVTANVVAPG 192 + M ++ G ++ +GS + A YA+SKA + + + EL++ N+ N+V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 193 YIDTDMTRAL-------DERIQEGALQF---IPAKRVGTAAEVAGVVSFLASEDASYISG 242 +TDM +L ++ I+ F IP K++ +++A V FL S A +I+ Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 243 AVIPVDGGMGMG 254 + VDGG +G Sbjct: 249 HNLCVDGGATLG 260
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 45.8 bits (108), Expect = 6e-08 Identities = 50/275 (18%), Positives = 101/275 (36%), Gaps = 38/275 (13%) Query: 5 LEGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD----RMRLIQRIVDRLPQKAPL 60 +EGK ++G I +AR QGA + D ++ + + + A Sbjct: 6 IEGKIAFITG--AAQGIGEAVARTLASQGAHI--AAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 61 IELDVQNEEHLASLAGRVTEVIGEGNNLDGVVHSIGFMPQSGMGINPFFDAPYEDVSKGI 120 DV++ + + R+ +G +D +V+ G + E+ Sbjct: 62 FPADVRDSAAIDEITARIEREMG---PIDILVNVAGVLR-----PGLIHSLSDEEWEATF 113 Query: 121 HISAYSYASLAKALLPIM--NPGGSIVGMDFD----PTRAMPAYNWMTVAKSALESVNRF 174 +++ + ++++ M GSIV + + P +M AY +K+A + Sbjct: 114 SVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYA---SSKAAAVMFTKC 170 Query: 175 VAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEE-----AGAQIQLLEDGWDQRAPVG 229 + E +Y +R N+V+ G T ++ G E + + P+ Sbjct: 171 LGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKT-------GIPLK 223 Query: 230 WNMKDPTPVAKTVCAVLSEWLPATTGDIIFADGGA 264 + P+ +A V ++S T + DGGA Sbjct: 224 -KLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGA 257
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.9 bits (64), Expect = 0.045 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 24/211 (11%) Query: 158 LRVARVELRSIDPPPS---IQASMEKQMKADREKRAMILTAEGTREAAIKQAEGQKQSQI 214 VA+ + + + A++EK+ KA E Q + SQ+ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEK-------------TQEVPKVTSQV 1129 Query: 215 LAAEGAKQAAILAAEADRQSRMLRAQGERAAAYLRAQGEAKAIQKTFAAIKAGRPTPEML 274 + + AE R++ E + + ++T + ++ + Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE-----QPVT 1184 Query: 275 AYQYLQTLPEMARGDANKVWVVPSDFNAALQGFTRMLGKPGEDGVFRFEASPVEDLPKHA 334 + T + N P+ + + K R VE + Sbjct: 1185 ESTTVNTGNSVVE---NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241 Query: 335 TDGDDDEVSDWFSTETDPAIAQAVAKAEAIA 365 D + D ST T+ ++ A AKA+ +A Sbjct: 1242 NDRSTVALCDLTSTNTNAVLSDARAKAQFVA 1272
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 2e-12 Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 8 RTARARIRDEALRLFAERGPDAVTMRDIATAAGVSPALLIRHYGSKDGLVEAV 60 + R I D ALRLF+++G + ++ +IA AAGV+ + H+ K L + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 2e-21 Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 26 APRVLVVEDSETIREMVNEALADVGYHTDTRSDGEGLERVLQGLRPDLVVLDVMLPGRDG 85 +LV +D IR ++N+AL+ GY S+ L R + DLVV DV++P + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 86 FALIDVIREWG-DIGIVLITARDGLPDRLRGLDGGADDYVVKPFELAELVSRVGAVLRRR 144 F L+ I++ D+ +++++A++ ++ + GA DY+ KPF+L EL+ +G L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 145 GRLPRVVQV 153 R P ++ Sbjct: 123 KRRPSKLED 131
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 35.4 bits (81), Expect = 5e-04 Identities = 19/58 (32%), Positives = 22/58 (37%) Query: 104 SPDTTAGPAVPALPGPPPLIPPGGHQGPHGPPPPPPPPPGGPPPGPPPDATATAAVHT 161 + + P P P G Q P P P P P PP G A A AAV+T Sbjct: 559 NGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNT 616
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 48.5 bits (115), Expect = 1e-08 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 31/170 (18%) Query: 125 DGSGGMGCTAGFLVRTNAGRTGILTAGHCNKE--GEASKVSINYSA------GGGYVNIG 176 +G + G +V G+ +LT H G+ + SA G Sbjct: 97 APTGTFIAS-GVVV----GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAE 151 Query: 177 TFSQSVSEGLNGEAHDIGLITLDSGKIPQSPAIKAAVPVTGIAT--DLKVGQLLCKFGMK 234 ++ EG D+ ++ Q+ I V ++ + +V Q + G Sbjct: 152 QITKYSGEG------DLAIVKF--SPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP 203 Query: 235 TGRAEC------GQVTDISASKVAFLAASECGDSGGPVYRLDDDGTAVAV 278 + G++T + + + ++ G+SG PV+ ++ + + Sbjct: 204 GDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVF--NEKNEVIGI 251
>cloacin#Cloacin signature. Length = 551 Score = 38.9 bits (90), Expect = 6e-05 Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 4/93 (4%) Query: 398 GNGGAGHDGHIGGGAGGTGGAGGNGTSADGVGHGGNGGIGGNGNSASNGGGDGGNGGAGG 457 G G GH+ GA T G G + GVG G + G G + + GGG G GG Sbjct: 3 GGDGRGHNT----GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 458 TGGHGGLLIGNGGAGGIGGTGGSGGAGAPGGIG 490 GHG GG G G AP G Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 37.0 bits (85), Expect = 2e-04 Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 4/99 (4%) Query: 546 GFGGNGGASGTGG--AGGAGGAGGAGGAGGAGGTSSVSGNIGAVGGNGGVGGDGGDGGDG 603 G G N GA T G GG G G GGA G SS + G G+G G G G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 604 GDGGAAGAAGGAGGQGGFLGSAGSAGGSGVG--GAGGAA 640 G G +G G GG + + + G + GAGG A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 36.6 bits (84), Expect = 3e-04 Identities = 44/140 (31%), Positives = 55/140 (39%), Gaps = 15/140 (10%) Query: 444 SNGGGDGGNGGAGGTGGHGGLLIGNGGAGGIGGTGGSGGAGAPGGIGGGGGGGGIGTATN 503 S G G G N GA T G+ NGG G+G GG A G G G + Sbjct: 2 SGGDGRGHNTGAHSTSGNI-----NGGPTGLGVGGG-----ASDGSGWSSENNPWGGGSG 51 Query: 504 LGIAAEGGLGGDGGGGGDTTAVGGNGGTGGVGGNGGNASAVFGFGGNGGASGTGGAGGAG 563 GI GG G GGG G +GG G GGN +A FG ++ G Sbjct: 52 SGIHWGGGSGHGNGGGN-----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Query: 564 GAGGAGGAGGAGGTSSVSGN 583 + GA A A +++ G Sbjct: 107 ISAGALSAAIADIMAALKGP 126 Score = 35.5 bits (81), Expect = 8e-04 Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Query: 373 NGGDG-GRGGDALSDYSTVTGPSATGGNGGAGHDGHIGGGAGGTGGAGGNGTSADGVGHG 431 +GGDG G A S + G G GG DG G + GG+G+ G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS-GWSSENNPWGGGSGSGIHWGGGS 60 Query: 432 GNGGIGGNGNSASNGGGDGGNGGAGGTGGHGGLLIGNGGAGGIG 475 G+G GGNGNS G G G + GAGG+ Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 35.5 bits (81), Expect = 8e-04 Identities = 32/94 (34%), Positives = 34/94 (36%), Gaps = 5/94 (5%) Query: 567 GAGGAGGAGGTSSVSGNIGAVGGNGGVGGDGGDGGDGGDGGAAGAAGGAGGQGGFLGSAG 626 G G G G S SGNI GG G+G GG G GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNIN--GGPTGLGVGGGASDGSGWSSENNPWGGGSGSG---IHWG 57 Query: 627 SAGGSGVGGAGGAAGNGGSAGAGGDGGVAAGTFG 660 G G GG G +G G G A FG Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 34.3 bits (78), Expect = 0.002 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 4/109 (3%) Query: 390 VTGPSATGGNGGAGHDGHIGGGAGGTGGAGGNGTSADGVGHGGNGGIGGNGNSASNGGGD 449 ++G G N GA G GG G G G ++DG G G G+ + G Sbjct: 1 MSGGDGRGHNTGAHSTS--GNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS--GIHW 56 Query: 450 GGNGGAGGTGGHGGLLIGNGGAGGIGGTGGSGGAGAPGGIGGGGGGGGI 498 GG G G GG+G G+G G + G P G GG + Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAV 105 Score = 34.3 bits (78), Expect = 0.002 Identities = 28/86 (32%), Positives = 35/86 (40%) Query: 489 IGGGGGGGGIGTATNLGIAAEGGLGGDGGGGGDTTAVGGNGGTGGVGGNGGNASAVFGFG 548 + GG G G A + GG G G GGG + G + GG G+ G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 549 GNGGASGTGGAGGAGGAGGAGGAGGA 574 G+G G G +GG G GG A A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 33.5 bits (76), Expect = 0.003 Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 7/113 (6%) Query: 527 GNGGTGGVGGNGGNASAVFGFGGNGGASGTGGAGGAGGAGGAGGAGGAGGTSSVSGNIGA 586 G G G GN + GG G GGA G G G S + G+ Sbjct: 6 GRGHNTGAHSTSGNIN-----GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 587 VGGNGGVGGDGGDGGDGGDGGAAGAAGGAGGQGGFLGSAGSAGGSGVGGAGGA 639 GNGG G+ G G G +A AA A G S AGG V + GA Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPAL--STPGAGGLAVSISAGA 111 Score = 33.1 bits (75), Expect = 0.003 Identities = 24/73 (32%), Positives = 30/73 (41%) Query: 140 GNGGNGGSGATGQVGGSGGAAGLIGTGGTGGAGGTGAAGGNGGAGGWLFGDGGIGGTGGA 199 G G N G+ +T G +G G + G+G + GG G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 200 GATGGSGGAGGVG 212 G G SGG G G Sbjct: 66 GGNGNSGGGSGTG 78 Score = 32.8 bits (74), Expect = 0.005 Identities = 22/72 (30%), Positives = 26/72 (36%) Query: 356 GGNGGDGGAAGLFAIGGNGGDGGRGGDALSDYSTVTGPSATGGNGGAGHDGHIGGGAGGT 415 G N G +G G G G G S +S+ P G G G G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 416 GGAGGNGTSADG 427 G G G+ G Sbjct: 68 NGNSGGGSGTGG 79 Score = 32.4 bits (73), Expect = 0.007 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Query: 189 GDGGIGGTGGAGATGGS--GGAGGVGFGSGGTGGFGGAGAA---GGTGGDGALLWGNGGA 243 G G G GA +T G+ GG G+G G G + G G + GG G G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 244 GGQGGTGMTGINGGSAGHGGSGGNAVGL----LGSGGAGGQG 281 G GG G +G G+ G+ + V L + GAGG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.8 bits (69), Expect = 0.017 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 7/121 (5%) Query: 194 GGTGGAGATGGSGGAGGVGFGSGGTGGFGGAGAAGGTGGDGALLWGNGGAGGQGGTGMTG 253 GG G TG +G + G G G GGA G + WG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNP-WGGGSGSGIHWGG--- 58 Query: 254 INGGSAGHGGSGGNAVGLLGSGGAGGQGGTGLA-GIDGVSSHGSGTASTGAAGTNVEHST 312 G G+GG GN+ G G+GG +A G +S+ G+G + + + + Sbjct: 59 --GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAI 116 Query: 313 A 313 A Sbjct: 117 A 117 Score = 30.1 bits (67), Expect = 0.039 Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 11/106 (10%) Query: 120 NGTDGAAGTGANGGDGGLLWGNGGNGGSGATGQVGGSGGAAGLIGTGGTGGAGGTGAAGG 179 N + NGG GL G G + GSG + + GG +G +G G G GG Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG---SGIHWGGGSGHGNGG 66 Query: 180 NGGAGGWLFGDGGIGGTGGAGATGGSGGAGGVGFGSGGTGGFGGAG 225 G G GG+G G GF + T G GG Sbjct: 67 GNGNSG--------GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 2e-11 Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 18 SNTREHILTCARELFALNGLDRTSVRSVAAAAGVDASLVHHYYGTKQQLFAAAIQI 73 TR+HIL A LF+ G+ TS+ +A AAGV ++ ++ K LF+ ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 2e-11 Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 18 SNTREHILTCARELFALNGLDRTSVRSVAAAAGVDASLVHHYYGTKQQLFAAAIQI 73 TR+HIL A LF+ G+ TS+ +A AAGV ++ ++ K LF+ ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 46.9 bits (111), Expect = 1e-08 Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 2/172 (1%) Query: 53 TMQRERASGTLERVLTTPLRRLDMLAGYGTAFSLAAAAQATVACIVSFWLLGFDTAGSPV 112 R T E +L T LR D++ G A++ AA A V LG+ S + Sbjct: 90 AFGRMEGQRTWEAMLYTQLRLGDIVLGE-MAWAATKAALAGAGIGVVAAALGYTQWLSLL 148 Query: 113 WVFVIAVVNAILGVGLGLLFSAFARTEFQAVQFIPLVMVPQLLLAGIIVPRAVMPTWLEW 172 + + + + LG++ +A A + + + LV+ P L L+G + P +P + Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208 Query: 173 VSNAMPASYALEALQQVGAHPELTYIALRDIVVVVVFAVASLCLAAATLRRR 224 + +P S++++ ++ + + + + + ++ V L+ A LRRR Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQH-VGALCIYIVIPFFLSTALLRRR 259
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.018 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 230 ASPTLLNHTAKSAARAYANMELPLAEVKAVAKATDTSINDVVMTIVDDALHHYLDEHRAP 289 ++ L A+ AARA A AE +A AKA ++ + IV++AL H + R P Sbjct: 58 STAQLKKTQAEQAARAKA-----AAEAQAKAKANRDALTQRLKDIVNEALRH--NASRTP 110 Query: 290 ADRPLVALMPMSMRSQA 306 + L +M+++ Sbjct: 111 SATELAHANNAAMQAED 127
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.3 bits (200), Expect = 3e-20 Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 1/194 (0%) Query: 9 NTSDLAGRVVAITGAGSGIGRELALLCAQRGADLALCDINDTAVADTAQTARGFGHDVIT 68 N + G++ ITGA GIG +A A +GA +A D N + + + Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 69 RRVDVSDPEQMTAFADATLGHFGGVDLLVNNAGVGLIGGFLDTSRKDWDWLVSINVMGVV 128 DV D + G +D+LVN AGV G S ++W+ S+N GV Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 129 HGCEAFLPAMIESGRGGHVVNLSSAAGLLANSALSAYSATKFAVLGLSEALRIELEPHRI 188 + + M++ R G +V + S + ++++AY+++K A + ++ L +EL + I Sbjct: 122 NASRSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 189 GVTAICPGVINTAI 202 + PG T + Sbjct: 181 RCNIVSPGSTETDM 194
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 52.1 bits (125), Expect = 2e-09 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 4/184 (2%) Query: 2 RVIVLLALVVGLEGASNGTIGALAVALKQAFGITNLQV---GLLVTASTAIGIVVMLVSG 58 R ++++ V L+ G I + L + +N G+L+ + V G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 59 TLADRVNRTRVLWITVLIWSVAMALGGISAGYGWLLASRVALGVVVAVGGPVVASLMGDF 118 L+DR R VL +++ +V A+ + L R+ G+ A G V + + D Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADI 123 Query: 119 FAQHERGRIYGFVLAGEGICTALGVLVSGWLAAITWRLSFLWLAVAGLLLTLALARTVPE 178 ER R +GF+ A G G ++ G + + F A L L +PE Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 179 PARG 182 +G Sbjct: 184 SHKG 187
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.6 bits (74), Expect = 0.006 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 170 TDLLVIMGANPAASQGSLLAAP------DVMGLIDAIRQRGKVIVIDPVRTVTAARADEW 223 T L + AA+ SL+ AP V G+I I + K + + V + A EW Sbjct: 373 TVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGILEASKQAMFEHVASKMADVIAEW 432
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 27.0 bits (59), Expect = 0.019 Identities = 9/14 (64%), Positives = 10/14 (71%) Query: 83 APLPEDYPPPPPPP 96 AP+ PPPPPPP Sbjct: 360 APVNNMMPPPPPPP 373
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 34.2 bits (78), Expect = 2e-04 Identities = 23/100 (23%), Positives = 37/100 (37%) Query: 68 LTRGEPGWEIIPEMEPLPGEMVVDKLGKGSFYATDLELILTTRRITHLIFTGIATDVCVH 127 L G +II E+ P ++V+ K +F T+L ++ LI TGI + Sbjct: 99 LNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCL 158 Query: 128 TTMREANDRGYECLLLSDCTGATDYANHLAALKMITMQGG 167 T EA + + D H AL+ + Sbjct: 159 VTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCA 198
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.1 bits (101), Expect = 3e-06 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 21/232 (9%) Query: 309 DRHAAARAQRERAELDADTAIAVKRAEVRQAAEIMWAEHQLNQTRMAIEAQAEIDRAQQR 368 + AR A A AE Q ++T E A AQ R Sbjct: 1013 NNEEIARVDEA---PVPPPAPATPSETTETVAE---NSKQESKTVEKNEQDATETTAQNR 1066 Query: 369 RRVIEA-LELPVHASSQRTDEPVEEDMYLPIAAEAEAAASRAVAELPA-GAAKADTDTTH 426 EA + + + + E E + ++ A + AK +T+ T Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSE------TKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 427 HLPA-QVESSPTVERHEQDRAAPLIPSIPDATKAAARWIRPLVPPFVARVIDNTTQPIRS 485 +P + SP E+ E + D T +T QP + Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT------ADTEQPAKE 1174 Query: 486 ARQVFEEVEEIAFSFKRTRKVTVNTESSDDHREQPAPQSAGADAPAPVNRIA 537 E+ + + V N E++ QP S ++ P +R + Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Score = 39.3 bits (91), Expect = 5e-05 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 11/200 (5%) Query: 364 RAQQRRRVIEALELPVHASSQRTDEPVEEDMYLPIAAEAEAAASRAVAELPAGAAKADTD 423 ++R + ++ + + Q D P P E A A PA A ++T Sbjct: 984 EVEKRNQTVDTTNITTPNNIQ-ADVPSV-----PSNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 424 TTHHLPAQVESSPTVERHEQDRAAPLIPSIPDATKAAARWIRPLVPPFVARVIDNTTQPI 483 T ++ ES TVE++EQD + A +A + VA+ T + Sbjct: 1038 ETVAENSKQESK-TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 484 RSARQVFEEVEEIAFSFKRTRKVTVNTESSDDHREQPAPQSAGADAPAPVNRIASSRGDA 543 + + VE+ ++ + T T+ Q +P+ ++ P A Sbjct: 1097 TTETKETATVEKE----EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 544 ESGSWAEDGEGLETHQGQPS 563 + + QP+ Sbjct: 1153 VNIKEPQSQTNTTADTEQPA 1172
>SOPEPROTEIN#Salmonella type III secretion SopE effector protein signature. Length = 239 Score = 32.0 bits (72), Expect = 0.004 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 293 QQYSLVLTDGVQTLPPL--VAQILQNAGRPGNTKPVTVQPSSLAKMPVVNRLDLSAYPDD 350 Q +L+++ G+ P L + + +NAG PG TK PS P + L SA Sbjct: 124 QCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKY 183 Query: 351 P 351 P Sbjct: 184 P 184
>PERTACTIN#Pertactin signature. Length = 922 Score = 37.4 bits (86), Expect = 7e-05 Identities = 22/57 (38%), Positives = 23/57 (40%) Query: 55 ADPNAAPPPADPNAPPPPPADPNAPPPPPADPNAPPPPPADPNAPPPPVVDPNAPEP 111 A+ N APP P P P P P PP PP P P PP P AP P Sbjct: 554 ANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAP 610 Score = 33.9 bits (77), Expect = 0.001 Identities = 22/48 (45%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 37 ASADPAPAPAPSTTAAPPADPNAAPPPADPNAPPPPPA-DPNAPPPPP 83 A A PAP PAP P P P P P PP PP P AP P P Sbjct: 565 AKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQP 612 Score = 30.1 bits (67), Expect = 0.014 Identities = 17/51 (33%), Positives = 19/51 (37%) Query: 31 IALPATASADPAPAPAPSTTAAPPADPNAAPPPADPNAPPPPPADPNAPPP 81 + A + PAP P P PP P PP P P P P PP Sbjct: 563 VGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPP 613
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 25.9 bits (57), Expect = 0.030 Identities = 11/54 (20%), Positives = 22/54 (40%) Query: 40 KGGGSGILMNIVIGVVGALIGGFLLSFFVDTAAGGWWFTLFTAILGSVILLWIV 93 +G G+G+ + + I + T AGGW +G +++ +V Sbjct: 184 RGIGNGMSILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGLIMVALVV 237
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.8 bits (243), Expect = 3e-26 Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 23/236 (9%) Query: 11 VRDKVIVITGGARGIGLATATALHKLGAKVAIGDVDEPAVKEAGADLGLEVYG----KLD 66 + K+ ITG A+GIG A A L GA +A D + +++ + L E D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 VTDPNSFSDFLDQVERQLGPLDVLVNNAGIMPVGRIVDEPDSVTRRILDINVYGVMVGSK 126 V D + + ++ER++GP+D+LVN AG++ G I D +N GV S+ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 LAAQRMVPRGRGHVINVASLAGEIYVVGLATYCASKHAVIAFTDAARIEYRSTGVKFSMV 186 ++ M+ R G ++ V S + +A Y +SK A + FT +E ++ ++V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 187 LPTFVNTELA--------SGTPGMKGF-----------KNAEPSDIADAIVALVAN 223 P T++ +KG K A+PSDIADA++ LV+ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 5e-06 Identities = 14/56 (25%), Positives = 21/56 (37%) Query: 104 IYVDPEHVCTGVGRLLMTAARERLRRVGVTAAVLWVLDGNARARRFYERDGWNFDG 159 I V ++ GVG L+ A E + +L D N A FY + + Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.0 bits (119), Expect = 8e-09 Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 17/188 (9%) Query: 4 ERLLRAAADHLS--GRPNATLDEIGAAAGVSHSTLYRHFDGRTALLEALDHAAIEQMRDA 61 + +L A S G + +L EI AAGV+ +Y HF ++ L + + + + Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 62 L-----KTSHWQEYSPIDALRILVAACEPVAGYLTLRYVQGQS---FETRKSVAEWR--- 110 K + L ++ + L + V + + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 111 --EINSEIEEIFLRGQRAGEFRTDVTADWLTEAFFSLVSG--AGWSVQHGRVARREFTHM 166 E IE+ A D+ +SG W ++ Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARD 193 Query: 167 ITALFLDG 174 A+ L+ Sbjct: 194 YVAILLEM 201
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.9 bits (111), Expect = 6e-09 Identities = 31/192 (16%), Positives = 53/192 (27%), Gaps = 17/192 (8%) Query: 4 DRDRILREAAECLGKRPT--ATQDEIAAAVGVSRATLHRHFAKRGALLEALDRLAISQLG 61 R IL A ++ + EIA A GV+R ++ HF + L + L+ S +G Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 62 EAM--TISRCQEGTAAEALQRLVAACRPVSGYLRLLYIRAQDFESDQLTEGWAEIDAQLR 119 E ++ + + L+ R + F + A + R Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 120 QLFL-----------RGQRSGEFRRDLPTLWLNQAFFSLVAG--AGRSANTGRIARSDFT 166 L L + DL T ++G Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEA 191 Query: 167 GMVTELLLRGAR 178 +LL Sbjct: 192 RDYVAILLEMYL 203
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 4e-12 Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 17/188 (9%) Query: 4 ERLLRAAADHLSTRP--NATLDEIGAAAGVSHSTLYRHFDGRTALLEALDHAAIEQMRDA 61 + +L A S + + +L EI AAGV+ +Y HF ++ L + + + + Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 62 L-----KTSHWQEYSPIDALRILVAACEPVAGYLTLRYVQGQS---FETRKSVAEWR--- 110 K + L ++ + L + V + + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 111 --EINSEIEEIFLRGQRAGEFRTDVTADWLTEAFFSLVSG--AGWSVQHGRVARREFTHM 166 E IE+ A D+ +SG W ++ Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARD 193 Query: 167 ITALFLDG 174 A+ L+ Sbjct: 194 YVAILLEM 201
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 6e-04 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 251 VRPQFQGRGVGSALMRRVEATLFERHAA-IRL-TTDGSSRAAGFYRKLGWSAAG 302 V ++ +GVG+AL+ + E H + L T D + A FY K + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 2e-04 Identities = 38/103 (36%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 443 GRGGNGG---TGGWLFGNGGVGGAGGTGADGGGMSTTGGHGGTGGTGGSARLIGAGGAGG 499 GRG N G T G + G G GG +DG G S+ G GGS I GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG----GGSGSGIHWGGGSG 61 Query: 500 EGGAGGIGIDVGESGGGGGLGGTGGTGGVLFGAGGDGGSGGAG 542 G GG G G SG GG L F A G+GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.9 bits (77), Expect = 0.002 Identities = 37/100 (37%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 349 GTGGAGGNGGNGVEAAAMVGGTGGTGGAGGVG---GWLYGN---GGAGGAGGHGGTHAGL 402 G G G N G + + GG G G GG GW N GG G+G H G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 403 GSTGGIGGAGGAAGLIGAGGAGGAGGAGGPSYLTADGAAG 442 G+ GG G +GG +G G A A A G L+ GA G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.1 bits (75), Expect = 0.003 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 6/94 (6%) Query: 515 GGGGLGGTGGTGGVLFGAGGDGGSGGAGGTGVLDADGGNGGGGGNGGTAIVIGNGGSGGA 574 G G G T G + G G GG G + N GGG+G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 575 GGTGGSGLADGTGGAGGNGGSGGLIGSDGASGTP 608 GG G SG G G GG+ + + A G P Sbjct: 66 GGNGNSG------GGSGTGGNLSAVAAPVAFGFP 93 Score = 32.8 bits (74), Expect = 0.004 Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 473 MSTTGGHGGTGGTGGSARLIGAGGAGGEGGAGGIGIDVGESGGGGGLGGTGGTGGVLFGA 532 MS G G G ++ I GG G G GG G S GG G+G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNIN-GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 533 GGDGGSGGAGGTGVLDADGGNGGGGGNGGTAIVIGNG----GSGGAGGTGGSGLADGTGG 588 G G GG G +G GG+G GG A + G + GAGG S A Sbjct: 60 SGHGNGGGNGNSG-----GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSA 114 Query: 589 A 589 A Sbjct: 115 A 115 Score = 32.8 bits (74), Expect = 0.004 Identities = 34/102 (33%), Positives = 37/102 (36%), Gaps = 14/102 (13%) Query: 254 GDGGAGGTGGDSIGGRANGGDGGAAGLIGVGGTGGTGGDALGTFGQAAGNGGAGGHGGLL 313 GDG TG S G NGG G G GG D G + GG G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTG-------LGVGGGASDGSGWSSENNPWGGGSGSGIHW 56 Query: 314 IGAGGDGGTGGVGGTNSPGGGPGGDGGSGGNAGLIGTGGAGG 355 G G G GG G GG G+GGN + A G Sbjct: 57 GGGSGHGNGGG-------NGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.8 bits (74), Expect = 0.004 Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 497 AGGEGGAGGIGIDVGESGGGGGLGGTGGTGGVLFGAGGDGGSGGAGGTGVLDADGGNGGG 556 +GG+G G GG G G GG G+G + GG G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 557 GGNGGTAIVIGNGGSGGAGGTGGSGLADGTGGAGG 591 GNGG GNG SGG GTGG+ A A G Sbjct: 62 HGNGG-----GNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.4 bits (73), Expect = 0.006 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Query: 289 TGGDALGTFGQAAGNGGA--GGHGGLLIGAGGDGGTGGVGGTNSPGGGPGGDGGSGGNAG 346 +GGD G A G GG GL +G G G+G N+P GG G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW-SSENNPWGGGSGSGIHWGGGS 60 Query: 347 LIGTGGAGGNGGNG 360 G GG GN G G Sbjct: 61 GHGNGGGNGNSGGG 74 Score = 31.6 bits (71), Expect = 0.009 Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 3/114 (2%) Query: 316 AGGDGGTGGVGGTNSPG---GGPGGDGGSGGNAGLIGTGGAGGNGGNGVEAAAMVGGTGG 372 +GGDG G ++ G GGP G G GG + G G G + GG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 373 TGGAGGVGGWLYGNGGAGGAGGHGGTHAGLGSTGGIGGAGGAAGLIGAGGAGGA 426 G GG G G+G G A GAGG A I AG A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115 Score = 31.6 bits (71), Expect = 0.011 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 125 GANGTAADPNGEAGGLLYGNGG-DGYSFTSGTTSEAGGAGGAAGLIGNGGAGGAGYLGGI 183 GA+ T+ + NG GL G G DG ++S GG+G G G G G G Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Query: 184 GGAGGNGG 191 GG G GG Sbjct: 72 GGGSGTGG 79 Score = 30.8 bits (69), Expect = 0.017 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 406 GGIGGAGGAAGLIGAGGAGGAGGAGGPSYLTADGAAGGRGGNGGTGGWLFGNGGVGGAGG 465 G GA +G I G G G G GG G+G G G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 466 TGADGGGMSTTGGHGGTGGTGGSARLIGAGGAGGEGGAGGIGIDV 510 G GGG T G + +A + A GAGG+ + + Sbjct: 68 NGNSGGGSGTGGN-----LSAVAAPVAFGFPALSTPGAGGLAVSI 107 Score = 30.8 bits (69), Expect = 0.019 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 1/106 (0%) Query: 419 GAGGAGGAGGAGGPSYLTADGAAGGRGGNGGTGGWLFGNGGVGGAGGTGADGGGMSTTGG 478 G G GA G G G G + G+G W N GG G+G GG S G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG-WSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 479 HGGTGGTGGSARLIGAGGAGGEGGAGGIGIDVGESGGGGGLGGTGG 524 GG G +GG + G A A G GG + + G Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110 Score = 30.5 bits (68), Expect = 0.020 Identities = 33/125 (26%), Positives = 41/125 (32%), Gaps = 6/125 (4%) Query: 213 GMGGNAGLIGAGGA--GGAGGAGSSLGGAGGTGGAGGRGGWLYGDGGAGGTGGDSIGGRA 270 G G N G G GG G G G + G+G + W G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPW--GGGSGSGIHWGGGSGHG 63 Query: 271 NGGDGGAAGLIGVGGTGGTGGDALGTFGQAAGNGGAGGHGGLLIGAGGDGGTGGVGGTNS 330 NGG G +G G GTGG G GGL + + + + Sbjct: 64 NGGGNGNSG--GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Query: 331 PGGGP 335 GP Sbjct: 122 ALKGP 126 Score = 30.5 bits (68), Expect = 0.023 Identities = 33/104 (31%), Positives = 37/104 (35%), Gaps = 1/104 (0%) Query: 493 GAGGAGGEGGAGGIGIDV-GESGGGGGLGGTGGTGGVLFGAGGDGGSGGAGGTGVLDADG 551 G G G GA ++ G G G GG G GG G+G + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 552 GNGGGGGNGGTAIVIGNGGSGGAGGTGGSGLADGTGGAGGNGGS 595 GNGGG GN G G S A A T GAGG S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106 Score = 30.1 bits (67), Expect = 0.028 Identities = 31/101 (30%), Positives = 38/101 (37%), Gaps = 22/101 (21%) Query: 144 NGGDGYSFTSGTTSEAGGAGGAAGLIGNGGAGGAGYLGGIGGAGGNGGWLYGNGGAGGAG 203 +GGDG +G S +G G G LG GGA GW Sbjct: 2 SGGDGRGHNTGAHSTSGNING-----------GPTGLGVGGGASDGSGW----------- 39 Query: 204 GADGNAATGGMGGNAGLIGAGGAGGAGGAGSSLGGAGGTGG 244 ++ N GG G G G G GG G+S GG+G G Sbjct: 40 SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 130 bits (329), Expect = 4e-39 Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 18/259 (6%) Query: 2 AGRLTGKVALVSGGARGMGASHVRALVAEGAHVVLGDILDDEGRAVAAELGDAARYVH-- 59 A + GK+A ++G A+G+G + R L ++GAH+ D ++ V + L AR+ Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 60 -LDVTQPEQWTAAVDTAVNEFGGLHVLVNNAGILNIGTIEDYALSEWQRILDINVTGVFL 118 DV E G + +LVN AG+L G I + EW+ +N TGVF Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 119 GIRAAVKPMKEAGRGSIINISSIEGLAGTIASHGYTVSKFAVRGLTKSTALELGPSGIRV 178 R+ K M + GSI+ + S + Y SK A TK LEL IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 179 NSIHPGLVKTPM--TEWVPED-----------LFQTA--LGRAAEPMEVSNLVVYLASDE 223 N + PG +T M + W E+ F+T L + A+P ++++ V++L S + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 224 SSYSTGAEFVVDGGTVAGL 242 + + T VDGG G+ Sbjct: 243 AGHITMHNLCVDGGATLGV 261
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 41/199 (20%), Positives = 60/199 (30%), Gaps = 17/199 (8%) Query: 12 ANRSERRKRRTRTALLRAAQRLIAE-GKLNVPVLEITQAADVGMGSFYNHFDSKEQLFEA 70 A ++++ + TR +L A RL ++ G + + EI +AA V G+ Y HF K LF Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 71 AVADVLDAHGALLDRCTASI-EDPAETFAASFRLTG---------RLFRRRPQESEILLA 120 G L A DP RL + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 121 NGAALLSSDRGLAPRALRDIKAASDAGRFRVE-----DPELALAMAGGALLGL-GTLLRA 174 A + + R L + I+ A + G + GL L A Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 175 DPQRDGCAAADAVTEDLLR 193 D A LL Sbjct: 182 PQSFDLKKEARDYVAILLE 200
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 31.9 bits (72), Expect = 0.005 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 193 QQRWLVVDVATECDLAQWDGVYQVCDPFRAATYMRIGQSRYRWEFQLRPGERTEDFN--- 249 ++ WL+ ATEC + + P R ++R+ + RW ++PG+ E + Sbjct: 10 RREWLLAQTATECQRHGREATLEY--PTRQGMWVRLSDAEKRWSAWIKPGDWLEHVSPAL 67 Query: 250 ---SISA-LRPLIAPW 261 ++SA L+ PW Sbjct: 68 AGAAVSAGAEHLVVPW 83
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 6e-05 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%) Query: 57 ALTVAVAENLPVGFSGIADG-----KLEMLFIDQQFRGRGAGSALLRAALA-----AIPD 106 A + EN +G I +E + + + +R +G G+ALL A+ Sbjct: 66 AAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCG 125 Query: 107 LLVDVNEQNPQAVGFYHRHGFVTFGRSETDGDGRP 141 L+++ + N A FY +H F+ P Sbjct: 126 LMLETQDINISACHFYAKHHFIIGAVDTMLYSNFP 160
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 25.8 bits (56), Expect = 0.020 Identities = 11/60 (18%), Positives = 20/60 (33%) Query: 18 AKGKAKEVFGAVTGRDDVKREGQAQQDKADAQRDAAKKEAEAEAARRGADVAEERQKANQ 77 + AKE V Q+ + + Q K+ A E + E+ Q+ + Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.018 Identities = 10/36 (27%), Positives = 15/36 (41%) Query: 64 CAVQQLLDALGVDDGEHTAGTPARVARAWREMLWGY 99 + L+ ALG D G+ + +V E W Y Sbjct: 798 VTIADLVQALGADPGKSSPMLEGQVRDWLNENGWEY 833
>cloacin#Cloacin signature. Length = 551 Score = 40.1 bits (93), Expect = 3e-05 Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 635 LGGGGGVGGNGGQGGAGGQGITGGSGGAGGSGGNGGTGGDDTENAEPSAGGAGGEGGMGG 694 + GG G G N G G G +G G G + G+G N P GG+G GG Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENN--PWGGGSGSGIHWGG 58 Query: 695 GGGDGVVGTGGMGGGGGQGGAGGDAI 720 G G G G G GGG G A+ Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAV 84 Score = 36.2 bits (83), Expect = 5e-04 Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 460 GDGKAGGGGGAGGRGGDGGDGDTGGAAGNGGDGGEGGNAVANSGRGGGTGGAGGVGGDGG 519 GDG+ G GA G+ G TG G G G G ++ N GG G GG G Sbjct: 4 GDGR-GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 520 NGTNGVGGAGGHGGMGGNAGSSDAA 544 G G +GG G GGN + A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 36.2 bits (83), Expect = 5e-04 Identities = 39/106 (36%), Positives = 43/106 (40%), Gaps = 10/106 (9%) Query: 592 GNGGDGGAGGDGGIGTLGPGGDGGAGG-NGGSGGDGNTQPVGHSLGGGGGVGGNGGQGGA 650 G G + GA G GP G G GG + GSG P G G G GG G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN- 64 Query: 651 GGQGITGGSGGAGGSGGNGGTGGDDTENAEPSAGGAGGEGGMGGGG 696 GG G SGG GTGG+ + A P A G G GG Sbjct: 65 --------GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 35.8 bits (82), Expect = 6e-04 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 469 GAGGRGGDGGDGDTGGAAGNGGDGGEGGNAVANSGRGGGTGGAGGVGGDGGNGTNGVGGA 528 G GRG + G T G NGG G G A+ G G + GG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 529 GGHGGMGGNAGSSDAANGAVGS 550 G+GG GN+G G + + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSA 83 Score = 35.5 bits (81), Expect = 8e-04 Identities = 35/98 (35%), Positives = 37/98 (37%) Query: 194 SGGAGGLGAVGGQGGGAGTLSLVGSGGDGGHGGEGTPGGSGGTGGGGGSAGLFGRGGFGG 253 +GG GLG GG G+G S G G G GGSG GGG G G G Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 254 SGGTGGDGVVGSPAALDGGAGGTGGSGGRGGLFAVGGD 291 G PA GAGG S G L A D Sbjct: 81 LSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 34.3 bits (78), Expect = 0.002 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 2/78 (2%) Query: 551 RGGDGGAGGKGGQGTTGGDGGNGGSAGKGGTGGSAVQTNDAGNGGDGGAGGDGGIGTLGP 610 RG + GA G G G G G+G S+ N+ GG G GG G Sbjct: 7 RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSS--ENNPWGGGSGSGIHWGGGSGHGN 64 Query: 611 GGDGGAGGNGGSGGDGNT 628 GG G G G G + Sbjct: 65 GGGNGNSGGGSGTGGNLS 82 Score = 33.9 bits (77), Expect = 0.003 Identities = 33/97 (34%), Positives = 39/97 (40%), Gaps = 1/97 (1%) Query: 139 GNGGNGYDNSASAGVAGGAGGSAGLIG-NGGIGGAGGALAAGGAGGTGGLLFGNGGSGGA 197 G G N +S S + GG G G + G G + GG G+G G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 198 GGLGAVGGQGGGAGTLSLVGSGGDGGHGGEGTPGGSG 234 GG G GG G G LS V + G TPG G Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 33.5 bits (76), Expect = 0.004 Identities = 26/86 (30%), Positives = 31/86 (36%) Query: 401 AGGHGARGADGLLDGEAGSKGGAGGGGGAGGAGGAGSQAGSDGVGGAGGDGGDGGHGAYG 460 +GG G G GG G G GGA + + G G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 461 DGKAGGGGGAGGRGGDGGDGDTGGAA 486 G GG G +GG G GG+ A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 33.1 bits (75), Expect = 0.004 Identities = 26/76 (34%), Positives = 28/76 (36%) Query: 706 MGGGGGQGGAGGDAIDSVGGIGGKGGGGADGGGGGASSTSTGGAPGGVGGDGDDGDPPTG 765 M GG G+G G S GG G G GG S S+ P G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 766 QTGGGGGTGGGGGAPG 781 G GGG G GG G Sbjct: 61 GHGNGGGNGNSGGGSG 76 Score = 32.4 bits (73), Expect = 0.008 Identities = 22/77 (28%), Positives = 28/77 (36%) Query: 702 GTGGMGGGGGQGGAGGDAIDSVGGIGGKGGGGADGGGGGASSTSTGGAPGGVGGDGDDGD 761 G G G G G+ G+G GG G ++ GG+ G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 762 PPTGQTGGGGGTGGGGG 778 G G GG G GG Sbjct: 63 GNGGGNGNSGGGSGTGG 79 Score = 32.0 bits (72), Expect = 0.009 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 316 AGGNGGAGGAGGVGGTGILSGSDGVGGGGGNGGRGGDGIRGADGVLDGESGYLGGSGGAG 375 +GG+G G +G ++G G G G G G G + G SG GG Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPT-GLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 376 GAGGAGGGGSQVGSDGVGGAGGTGGA 401 G G GG G+ G G GG A Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.0 bits (72), Expect = 0.011 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Query: 490 GDGGEGGNAVANSGRGGGTGGAGGVGGDGGNGTNGVGGAGGHGGMGGNAGSSDAANGAVG 549 G G G N A+S G GG G+G GG ++G G + + GG +GS G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGI---HWGG 58 Query: 550 SRGGDGGAGGKGGQGTTGGDGGNGGSAGKGGTGGSAVQTNDAG 592 G G G G +G G A G A+ T AG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101 Score = 30.8 bits (69), Expect = 0.026 Identities = 22/78 (28%), Positives = 26/78 (33%) Query: 527 GAGGHGGMGGNAGSSDAANGAVGSRGGDGGAGGKGGQGTTGGDGGNGGSAGKGGTGGSAV 586 G G G G +S NG G GGA G + G G +G GGS Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 587 QTNDAGNGGDGGAGGDGG 604 GG+G G Sbjct: 63 GNGGGNGNSGGGSGTGGN 80 Score = 30.1 bits (67), Expect = 0.036 Identities = 31/108 (28%), Positives = 37/108 (34%), Gaps = 6/108 (5%) Query: 510 GAGGVGGDGGNGTNGVGGAGGHGGMGGNAGSSDAANGAVGSRGGDGGAGGKGGQGTTGGD 569 G G G + G + GG G+G G+SD GS GG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASD------GSGWSSENNPWGGGSGSGIHW 56 Query: 570 GGNGGSAGKGGTGGSAVQTNDAGNGGDGGAGGDGGIGTLGPGGDGGAG 617 GG G GG G S + GN A G L G GG Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 29.7 bits (66), Expect = 0.047 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 275 GTGGSGGRGGLFAVGGD--GGHGGIGGNGARGADGVGDGESGTAGGNGGAGGAGGVGGTG 332 G G G G + G+ GG G+G G +DG G G G G GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGG-ASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 333 ILSGSDGVGGGGGNGGRGG 351 +G GGG+G G Sbjct: 62 HGNGGGNGNSGGGSGTGGN 80
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.4 bits (76), Expect = 0.002 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 7/149 (4%) Query: 387 FINIGYVIGLLPVTGLQLPLISAGGTSTATTLAMIGIIANAARHEPEAVAALRAGRDDRV 446 I+ V GLL + Q+ + A + T+ +A A P+AV + Sbjct: 23 CIHGAVVAGLLYTSVHQVIELPAPAQPISVTM-----VAPADLEPPQAVQPPPEPVVEPE 77 Query: 447 NRMLRLPLPKPYAPTRLEVFRDRKRVQPPAARPPAKQAAARKAPKAATRLAEEPLRPALP 506 +P P AP +E + + + +P + + K ++ E PA P Sbjct: 78 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARP 137 Query: 507 RRPDRPGARSGQQGAGQRYAGQRHSGRVR 535 + + +G R R + Sbjct: 138 --TSSTATAATSKPVTSVASGPRALSRNQ 164
>cloacin#Cloacin signature. Length = 551 Score = 39.3 bits (91), Expect = 4e-05 Identities = 32/80 (40%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 356 SGIPGVGGNGGAGGTSGLIGSGGAGGAGGTGGANHASTNSIGGVGGAGGTGGAARLFGSG 415 SG G G N GA TSG I +GG G G GGA+ S S GG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 416 GSGGTGGVGGIGNTIGGTGG 435 G G GG G G G G Sbjct: 61 GHGNGGGNGNSGGGSGTGGN 80 Score = 39.3 bits (91), Expect = 4e-05 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 7/88 (7%) Query: 416 GSGGTGGVGGIGNTIGGTGGVGGGGGAAGLIGDGGAGGAGGNGGDGTGAGGLGGNGASAD 475 G G G G +T G G G G G G + G+G GG+G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLG-------VGGGASDGSGWSSENNPWGGGSGSGIH 55 Query: 476 WIGNGGSGGAGGSGGLGAHAGAGGNGGS 503 W G G G GG+G G +G GGN + Sbjct: 56 WGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 37.0 bits (85), Expect = 2e-04 Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 487 GSGGLGAHAGAGGNGGSLYGNGGSGGVGGTGASGAG------GNGGGGGAAGLIGDGGAG 540 G G G + GA G++ G GVGG + G+G GGG G+ G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 541 GDGGDGSGAGGLGGDGGNADWMGNGGAGGSGGAGVPPATG 580 G+GG +GG G GGN + A G P A G Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 36.2 bits (83), Expect = 4e-04 Identities = 39/122 (31%), Positives = 44/122 (36%), Gaps = 15/122 (12%) Query: 378 GAGGAGGTGGANHASTNSIGGVGGAGGTGGAARLFGSGGSGGTGGVGGIGNTIGGTGGVG 437 G G G GA+ S N GG G G GGA+ G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG--------------G 48 Query: 438 GGGGAAGLIGDGGAGGAGGNGGDGTGAGGLGGNGASADWIGNGGSG-GAGGSGGLGAHAG 496 G G G G G GGNG G G+G G A A + G G+GGL Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSIS 108 Query: 497 AG 498 AG Sbjct: 109 AG 110 Score = 33.9 bits (77), Expect = 0.002 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 462 TGAGGLGGNGASADWIGNGGSGGAGGSGGLGAHAGAGGNGGSLYGNGGSGGVGGTGASGA 521 +G G G N + GN G G G GA G+G + + GGSG G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 522 GGNGGGGGAAGLIGDGGAGGDGGDGSGA 549 GNGGG G +G GG+G G + A Sbjct: 62 HGNGGGNGNSG----GGSGTGGNLSAVA 85 Score = 33.1 bits (75), Expect = 0.003 Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 3/104 (2%) Query: 437 GGGGGAAGLIGDGGAGGAGGNGGDGTGAGGLGGNGASADWIGNGGSGGAGGSGGLGAHAG 496 G G G GG G G G G G+G S++ GG G+G G G+ G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 497 AGGNGGSLYGNGGSGGVGGTGASGAGGNGGGGGAAGLIGDGGAG 540 GG G +GG G GG ++ A G A G GG Sbjct: 64 NGGGNG---NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 33.1 bits (75), Expect = 0.003 Identities = 33/101 (32%), Positives = 41/101 (40%) Query: 300 GNGGAGGHGGFGGTATAPVGDGGVGGNGGAGGNGGLFYGDGGAGGAGGTGGGLLQGSGIP 359 G+G G + G G+G GGA G + GG G+G GSG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 360 GVGGNGGAGGTSGLIGSGGAGGAGGTGGANHASTNSIGGVG 400 GGNG +GG SG G+ A A G ST GG+ Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 31.2 bits (70), Expect = 0.013 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Query: 268 GGGDAGLNNQIFGAKGTPNGAAGGYGGNAGLW-GNGGAGGHGGFGGTATAPVGDGGVGGN 326 GG G N G NG G G G G+G + + +GG + + + GG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 327 GGAGGNGGLFYGDGGAGGAGGTGGGLLQGSGIP 359 G GGNG G G GG L P Sbjct: 63 GNGGGNGN--------SGGGSGTGGNLSAVAAP 87 Score = 30.5 bits (68), Expect = 0.021 Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 319 GDGGVGGNGGAGGNGGLFYGDGGAGGAGGTGGGLLQGSGIPGVGGNGGAGGTSGLIGSGG 378 G G G N GA G G G GGG GSG G G SG+ GG Sbjct: 3 GGDGRGHNTGAHSTSG---NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 379 AGGAGGTGGANHASTNSIGGVGGAGGT 405 +G G G N + GG A Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLSAVAA 86
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.036 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 2 SRGESRQARPSHSSRSRRVSGKAHSAHEPRQPRSSGKTRADRSPKQVREPKRLPQAKQAK 61 S E+++ + + + + V + + E + + K + SPKQ + PQA+ A+ Sbjct: 1088 SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 62 KTRPAARTEVAPPGRSARERRTRQAVEVASR 92 + P + P ++ T Q + S Sbjct: 1148 ENDPTVNIK-EPQSQTNTTADTEQPAKETSS 1177
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.5 bits (68), Expect = 0.015 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 201 LVQAPDGNWVVVGTPKPADGVPPPPLNTKLPEEGPPAPPKPAALPPEVPVRVMPGPDDPA 260 L +G W +VG P P P + + P P P PP+ P P+ PA Sbjct: 552 LAANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQ--PPQPPQPPQRQPEAPA 609 Query: 261 LLPRTGPQL 269 P G +L Sbjct: 610 PQPPAGREL 618
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.6 bits (74), Expect = 0.004 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%) Query: 87 ISASAATLILANAAVPWTGALVAAVFFVTATASGVVAGVSGVAYTDMISNKLSVLRRGEL 146 +SA +A+ IL+NA T AA + + V+ V IS + R + Sbjct: 249 LSAISASFILSNADAD-TRTKAAAGVEL---TTKVLGNV-----GKGISQYIIAQRAAQG 299 Query: 147 LLTQGAVGSLLATGVTLVIVP 167 L T A L+A+ VTL I P Sbjct: 300 LSTSAAAAGLIASAVTLAISP 320
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 59.7 bits (144), Expect = 9e-13 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 9/191 (4%) Query: 21 GVHVRTIAVDLVDPEAVALICSETADLEVGLLIYNAGANTCREQFLDA-ELTELGRVIDL 79 H D+ D A+ I + + I A R + + E + Sbjct: 56 ARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSV 115 Query: 80 NVTRMLELVQHFGRPMRARRRGGIVLVGSTAATYGAMRQSAYAGAKAFSRLFAESLWLEL 139 N T + + + M RR G IV VGS A +AYA +KA + +F + L LEL Sbjct: 116 NSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 140 RETGVDVLELVLGVTRTPAMQRAGLNFDAPGISVSDPADVAREGL--------DNLANGP 191 E + + G T T + + + + + G+ ++A+ Sbjct: 176 AEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235 Query: 192 VVIAGDNAAHV 202 + + A H+ Sbjct: 236 LFLVSGQAGHI 246
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 32.2 bits (73), Expect = 0.004 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 248 GWTQVTSELSFERSGPERFLSTFVLLAATAESMAEQRFTRDQQLGRLVARIAGLHQMSAA 307 GW S SGP R+L L+ TA ++ +Q R ++ G L I L SA+ Sbjct: 139 GWRPDASNRLVYVSGPPRYLE---LVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASAS 195
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 37.7 bits (87), Expect = 3e-05 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 17/179 (9%) Query: 4 EALVAVVTGASRGAGRGIAAALAARGWRVYA----------TSRSVADAPPGGVAVRVDH 53 E +A +TGA++G G +A LA++G + A S+ A D Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 54 RDDTATAALFERVQQESGRLDLLVNNAAAISDDLVD--PKPFWEKPLALADVLDVGLRSS 111 RD A + R+++E G +D+LVN A + L+ WE ++ + V S Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSV-NSTGVFNASR 125 Query: 112 YVASWYAAPLLVAGGRGLIAFTSSPGSVCYMHGPAYGAQKAGIDKMAADMAVDFHDTGV 170 V+ + ++ S+P V AY + KA + ++ + + Sbjct: 126 SVSKYMMD----RRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 55.8 bits (134), Expect = 2e-11 Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 6/175 (3%) Query: 6 VIGASSGLGRCIGVGLARRGDHVA---LLARRRERTEAAAKEAGPGTVAVECDVTDEASC 62 + GA+ G+G + LA +G H+A + E+ ++ K A DV D A+ Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 63 RSALAAAADALGGIDNLVYAPAISPLVRLAETDADTWRRVFDTNVIGASLATAAALPHLR 122 A +G ID LV + + + W F N G A+ + ++ Sbjct: 73 DEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMM 132 Query: 123 AA-AGKAVYLSSDAGSHAPPWPGLGAYGVSKAALERLVEAWRAEHPEIGFTCVIV 176 +G V + S+ P + AY SKAA + E E C IV Sbjct: 133 DRRSGSIVTVGSNPAG--VPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 38.2 bits (88), Expect = 2e-04 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 11/112 (9%) Query: 176 RVGVVHRDVKPANVLLTD-YGEPALCDFGIARMEAGFETGPGMFVGSPAYTAPELLAGE- 233 + GVVH D+KP NV+ GEP + D G+ P F S + APEL G Sbjct: 263 KAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSG---EQPKGFTES--FKAPELGVGNL 317 Query: 234 SPNAASDVYALGASLFAGLTGHAAFERRNGEQVVAQFLRIANESIPDLRDNN 285 + SDV+ + ++L + G FE +N E Q LR + D N Sbjct: 318 GASEKSDVFLVVSTLLHCIEG---FE-KNPEIKPNQGLRFITSEPAHVMDEN 365
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.9 bits (155), Expect = 2e-14 Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 73 PGRPRGNSSDTRQRILASARELFASNGIDRTSIRAVAAAADVDAALVHHYFGTKQQLFAA 132 + + + +TRQ IL A LF+ G+ TS+ +A AA V ++ +F K LF+ Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 133 AIH 135 Sbjct: 62 IWE 64
>cloacin#Cloacin signature. Length = 551 Score = 37.8 bits (87), Expect = 8e-05 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 4/121 (3%) Query: 207 GAARAGGAANSAGGTDAAASSSGAGGGGSAGQGVAST----GGDHGAGATSSASGHSPGH 262 G GA +++G + + G GGG S G G +S GG G+G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 263 GVGLGSGLGRSLDGYGTAALAGGPLGAVGSGAPGAVGGVGELSAPTATSALPTAASATAE 322 G SG G G +A A G PGA G +SA ++A+ +A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKG 125 Query: 323 P 323 P Sbjct: 126 P 126 Score = 29.7 bits (66), Expect = 0.028 Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 11/119 (9%) Query: 172 AAGNGDAASVGTGVQHGGAGGGSGDGMASSHVSDGGAARAGGAANSAGGTDAAASSSGAG 231 +GN + G GV G G G G +S + GG + +G G G G Sbjct: 16 TSGNINGGPTGLGV---GGGASDGSGWSSENNPWGGGSGSGIHWGGGSG-------HGNG 65 Query: 232 GGGSAGQGVASTGGDHGAGATSSASGHSPGHGVGLGSGLGRSLDGYGTAALAGGPLGAV 290 GG G + TGG+ A A A G G G GL S+ +A + A+ Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG-GLAVSISAGALSAAIADIMAAL 123
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.0 bits (67), Expect = 0.007 Identities = 20/53 (37%), Positives = 23/53 (43%) Query: 94 PAPVPAGAPVPLPAGAPVPVPVAVGAPVPAAAPAPAAAPLLLQAGGKGEPTAI 146 PAP PA P P P P P P A PA AAA + GG G + + Sbjct: 573 PAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTL 625
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.049 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 606 AVSEGDVVVIIEAMKMEHPLVAPISGRV-EVLVAVGDQVKVEQVLARLIPDTEQAQSKDS 664 A + G + + +++ + V E++V G+ V+ VL +L +A + + Sbjct: 84 ATANGKLTHSGRSKEIKPIE----NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.1 bits (65), Expect = 0.017 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 14/69 (20%) Query: 124 GTQIADGGLPWRYDASGAVAVVSPPKETREF--DGATYVLE-----RGIRTD------FA 170 + I + WR DAS + VS P E A LE R +T F Sbjct: 130 RSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAA-ALEQQTQIRSEKTGALAIEIFP 188 Query: 171 LVHAWKGDR 179 L +A DR Sbjct: 189 LKYASASDR 197
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.7 bits (183), Expect = 1e-18 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 9/183 (4%) Query: 13 PNRRSQQKSDRRLQLLSAAERLFAERGFLAVRLEDIGAAAGISGPAIYRHFPNKESLLVE 72 + Q+ + R +L A RLF+++G + L +I AAG++ AIY HF +K L E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 73 LLVGISSRLLAGARQVTTN-SNDAAAALDGLIDFHLDFALGEPDLIRIQDRDLGHLPAAA 131 + S + + D + L ++ L+ + E + + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 132 ERQ-VRKAQRQYVEIWVGVLRQL------DPGLAEA-DARLMAHAAFGLLNSTPHSMKSA 183 E V++AQR + Q L R A G ++ + A Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 184 DTK 186 Sbjct: 182 PQS 184
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 30.4 bits (68), Expect = 0.008 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 5/119 (4%) Query: 128 ALEPLPPIAGPSSTIAPPTTRTSPTPSSSPAPTTTSGSATPTTTPTAGAMQTVVYTVTGE 187 AL + PIA + + TT + + ++ TP+ + A ++ Sbjct: 14 ALLAVAPIAATAMPVNAATTINADSAINANTNAKYDVDVTPSISAIAAVAKSDTMPAIPG 73 Query: 188 GRAISVTYMDTGDVIQTEFNVALPWSKEVSLSRSANHPASVTIVNIGHNVTCSVTVSGV 246 S++ G S +++ S N+ + T VTV V Sbjct: 74 SLTGSISASYNGKSYTANLP---KDSGNATITDSNNNTVKPAELEADKAYT--VTVPDV 127
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 79.7 bits (196), Expect = 8e-20 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 3/185 (1%) Query: 12 AVVTGASQNIGEALATELAARGHNLIVTARRESLLNELAARLTDKYRVTVEVRPADLADP 71 A +TGA+Q IGEA+A LA++G ++ L ++ + L + R E PAD+ D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR-HAEAFPADVRDS 69 Query: 72 QERTKLTDELAAR--PISILCANAGTATFGPVASLDPAGEKAQVQLNAVAVHDLTLAVLP 129 ++T + PI IL AG G + SL +A +N+ V + + +V Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 130 GMIERRAGGILISGSAAGNSPIPYNATYAATKAFANTFSESLRGELRGSGVHVTLLAPGP 189 M++RR+G I+ GS P A YA++KA A F++ L EL + +++PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 190 VRTDL 194 TD+ Sbjct: 190 TETDM 194
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.6 bits (66), Expect = 0.029 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 6/104 (5%) Query: 409 RMRAPRSLMGAIGSEAIRAVAQASPLQAVYGQTIDRESAHEMLSAKYAPATEAAEPPATA 468 R P L I + + S Q + + + M++ EPP Sbjct: 8 RFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVTP------ADLEPPQAV 61 Query: 469 PQPPRGKYDPLPWPQDFDLPPMPTPVEPQGPPLWEEVLKNPTVK 512 PP +P P P+ PP PV + P + P K Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 105
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 3e-10 Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 13/190 (6%) Query: 28 IQQTAHRLFAERGFDAVTTEDIAAAAGVSISTYFRHAPTKEGLLVDPVRQAITEIVSSYR 87 I A RLF+++G + + +IA AAGV+ + H K L + + + I Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 88 ---------SWPADESAVEALIALFVSYARDAGDLKLDTWRRAIATAPYLLSKSALVSED 138 + ++ V+ R +++ + ++ ++ Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCL 135 Query: 139 DQHRFIEHVASRMGV--DARTDIRPALLVHTSLATVKFVFDRWLSTDPPSSPIFHVQMDQ 196 + + IE D+ + + + WL P S + Sbjct: 136 ESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF--APQSFDLKKEARD 193 Query: 197 ALRIALAGFR 206 + I L + Sbjct: 194 YVAILLEMYL 203
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.1 bits (67), Expect = 0.023 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 9/73 (12%) Query: 383 PPKDLAPPPGTAVGPDGN-LVALGP---PLINPSPNL---TDPNPPLPAWLTPSPRVPGT 435 P DL P G+A P+ L + P P NP+PN T PNP L P Sbjct: 311 PRPDLTP--GSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTD 368 Query: 436 GDPDDAPPAPPAP 448 G P P +P P Sbjct: 369 GQPGTRPDSPAVP 381
>PF07675#Cleaved Adhesin Length = 1358 Score = 28.9 bits (64), Expect = 0.040 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 115 SPDQLAPGSVIPVQRTEPSFDVTALLNGYEPLFSLLNPRDADNL--TKGIIESLQGD 169 D GSVIP T P F TA N Y F L P +AD + T+ II + QG+ Sbjct: 409 DADHNTFGSVIPA--TGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGE 463
>PERTACTIN#Pertactin signature. Length = 922 Score = 34.3 bits (78), Expect = 0.001 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 429 APDGTPLW----PGLPPAPPPGAPRESGPTPGSEPFVVPAPAQAQPTPLPPAPLPQEVAP 484 A +G W PPAP P + GP PG +P P P Q P PP P+ AP Sbjct: 553 AANGNGQWSLVGAKAPPAPKPAP--QPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAP 610 Query: 485 SP 486 P Sbjct: 611 QP 612
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 31.0 bits (69), Expect = 0.007 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Query: 117 GSPKQLKPGDTIPMTHTSPALDLDALIGGFRPLLKALDPEQVNALSGQLIRALQGEGATI 176 G+ D ++ + ++L G + K + PE LS +L +++ + Sbjct: 252 GTDATKNLNDATLKSNAGTSA-TESL--GIKNSNKQISPEHQAILSKRLE-SVESDIRLE 307 Query: 177 NSFLAQTAALTTTLADRDQLIGDVIINLNVVLGSLGDQNKQFAKAVDALAELMEGLQARK 236 T +T A + Q+ GD+I+ +V +G + ++Q+A + + + + R Sbjct: 308 Q----NTMDMTRIDARKMQMTGDLIMKNSVTVGGIAGASRQYAATQERSEQQISQVNNRV 363 Query: 237 EDITKGVAYTNAAASS 252 A ++ S+ Sbjct: 364 ASTASDEARESSRKST 379
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 32.3 bits (73), Expect = 0.005 Identities = 15/49 (30%), Positives = 15/49 (30%) Query: 388 PLPAPPPGGPPPGPPAPAPPELASIPQPTPSSVLVPAPGEVSAPQTAGA 436 P P P P P P P P A PQP L A G Sbjct: 573 PAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGL 621
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.7 bits (69), Expect = 0.008 Identities = 12/44 (27%), Positives = 16/44 (36%) Query: 390 PPQAIPPQAIPPQQAPPAAAPPAQAPPPAVGPPLPAEAPATPDP 433 PPQA+ P P + P P + P A + P P Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP 100
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.4 bits (92), Expect = 2e-05 Identities = 91/411 (22%), Positives = 146/411 (35%), Gaps = 45/411 (10%) Query: 8 PAFLILFATLAACAGNGISIVAFPWLVLEREGSAGQAS---IVAGAITLPLLFSTLVAGT 64 P +IL G G+ + P L+ + S + I+ L V G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 65 AVDYFGRRPVSMVSDALSGSAVAIVPLIAWAFGDDAVSVAVLAAL--GACSATFD-PAGI 121 D FGRRPV +VS L+G+AV + A + V + + G AT Sbjct: 66 LSDRFGRRPVLLVS--LAGAAVDYAIM---ATAP-FLWVLYIGRIVAGITGATGAVAGAY 119 Query: 122 TARQSMLPEAAARAGWSLDRINSSYEAILNLAFVVGPGIGGLMIATVGGITTM--WITAG 179 A + E A G+ A V GP +GGLM GG + + A Sbjct: 120 IADITDGDERARHFGF--------MSACFGFGMVAGPVLGGLM----GGFSPHAPFFAAA 167 Query: 180 AFGLSLLAIGALRLEGAGRPHHETRPDGLV-SGVTQGLRFVWNLRVLRALALIDLTVTAL 238 A G L + + E RP R+ + V+ AL + + L Sbjct: 168 ALNGLNFLTGCFLLPESHKG--ERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ-L 224 Query: 239 YLPMESVLFPTYFSDRQQ--PAQLGSVLVALS-LGSLVGALGYGMLSNYVSRRTIMLTAV 295 + + L+ + DR +G L A L SL A+ G ++ + R ++ Sbjct: 225 VGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM--- 281 Query: 296 LTLGAATTGIALLPPLP----VILVLCALIGVVYGPIQPIYNYVMQTRAPHYLRGRVVGV 351 L + A TG LL ++ L G P ++ + +G++ G Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLASG--GIGMPALQAMLSRQVDEERQGQLQGS 339 Query: 352 MTSLAYAAGPLGLLLAGPVADAAGLKVAFFALALPIAITGLMCIRLPSLRE 402 + +L +G LL + A+ + + IA L + LP+LR Sbjct: 340 LAALTSLTSIVGPLLFTAIYAAS---ITTWNGWAWIAGAALYLLCLPALRR 387
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 5e-14 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 10/163 (6%) Query: 11 RSEVAADRILDAAERLYTEHDPASIGMNEIARAAGCSRATLYRYFESREALRTAYVHRET 70 ++ ILD A RL+++ +S + EIA+AAG +R +Y +F+ + L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 71 LRLGREIMQQIGDI-DDPRDQLITSITATLRMVRQRPALAAWFASTRPPIGGELAGQSEV 129 +G ++ DP L + L E G+ V Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHK--CEFVGEMAV 125 Query: 130 IAGLAAAFLQ-------SLGPEAPAAVERRARWTVRVIVSLLM 165 + A A R ++ Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMR 168
>cloacin#Cloacin signature. Length = 551 Score = 40.5 bits (94), Expect = 2e-05 Identities = 41/112 (36%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 202 GGDGTGNGFGSLSGGGNGGSGGGAGLWGVGGAGGNGGAGGSPTVPGHAGGNGGSGGIGGA 261 GGDG G+ G+ S GN GG G G GG+ G + N GG G+ Sbjct: 3 GGDGRGHNTGAHSTSGNIN----------GGPTGLGVGGGASDGSGWSSENNPWGGGSGS 52 Query: 262 GGVFGNGGAGGNGGIGGTGGTGGNGGIGGNGAAGGAGGLWGDGGVGGNGAVG 313 G +G G GNG GG G +GG G GGN +A A +G + GA G Sbjct: 53 GIHWGGGSGHGNG--GGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 39.7 bits (92), Expect = 3e-05 Identities = 24/77 (31%), Positives = 29/77 (37%) Query: 284 GNGGIGGNGAAGGAGGLWGDGGVGGNGAVGGNSGGGFGVMNDGGSGGHGGDARLFGNGGN 343 G G G N A G G G G + G G+ N+ GG G G G+ Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 344 GGAGAVGGAGGNGADGG 360 G G G +GG GG Sbjct: 63 GNGGGNGNSGGGSGTGG 79 Score = 37.8 bits (87), Expect = 1e-04 Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 593 NGGVGGAGGVGAFGSGGTGGNGGAGGAVGNGGAGGDAGSSGNLSPAGGGKGGNAKLVGNG 652 +GG G GA + G NGG G GGA +G S +P GGG G G Sbjct: 2 SGGDGRGHNTGAHSTSGNI-NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 653 GDGGAGVFGGLGGDGGTGGQL 673 G G G G GG GTGG L Sbjct: 61 GHGNGGGNGNSGGGSGTGGNL 81 Score = 37.8 bits (87), Expect = 1e-04 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 125 GANGTAANPNGGDGGLLYGNGGNGFTQTGNNNVAGGNGGNAGLIGNGGAGGGGGTAFAGG 184 GA+ T+ N NGG GL G G + + + N G G +G+ GG+G G GG Sbjct: 12 GAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN-----GG 66 Query: 185 NGGHGGLLYGNGGAGAIGGDGTGNGFGSLSGGGNGGSG 222 G+ G G GG + GF +LS G GG Sbjct: 67 GNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 37.0 bits (85), Expect = 2e-04 Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 160 GNGGNAGLIGNGGAGGGGGTAFAGGNGGHGGLLYGNGGAGAIGGDGTGNGFGSLSGGGNG 219 G G N G G GG T G G G + + GG G+G +G SG GNG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 220 GSGGGAGLWGVGGAGGNGGAGGSPTVPG 247 G G +G G G GGN A +P G Sbjct: 66 GGNGNSG--GGSGTGGNLSAVAAPVAFG 91 Score = 36.6 bits (84), Expect = 3e-04 Identities = 26/78 (33%), Positives = 33/78 (42%) Query: 251 GNGGSGGIGGAGGVFGNGGAGGNGGIGGTGGTGGNGGIGGNGAAGGAGGLWGDGGVGGNG 310 G G + G G G G G G + G+G + G G+G WG G GNG Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 311 AVGGNSGGGFGVMNDGGS 328 GNSGGG G + + Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 35.8 bits (82), Expect = 5e-04 Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Query: 173 AGGGGGTAFAGGNGGHGGLLYGNGGAGAIGGDGTGNGFGSLSGGGNGGSGGGAGLWGVGG 232 +GG G G + G + G G G GG G+G+ S + GGSG G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 233 AGGNGGAGGSPTVPGHAGGNGGSGGIGGAGGVFG 266 G GG G S G G GG+ A FG Sbjct: 62 HGNGGGNGNS----GGGSGTGGNLSAVAAPVAFG 91 Score = 33.1 bits (75), Expect = 0.004 Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 562 GDGGLGGDGGIGLAGTGGNGGNGGDAVGVIGNGGVGGAGGVGAFGSG-----GTGGNGGA 616 G G G + G NGG G VG + G G + +G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 617 GGAVGNGGAGGDAGSSGNLSPAGGGKGGNAKLVGNGGDGGAGV 659 G GNG +GG +G+ GNLS + G GG V Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAV 105 Score = 32.8 bits (74), Expect = 0.005 Identities = 35/130 (26%), Positives = 43/130 (33%), Gaps = 19/130 (14%) Query: 323 MNDGGSGGHGGDARLFGNGGNGGAGAVGGAGGNGADGGIGGQFFGNGGDGGAGGIGTAGL 382 M+ G GH A NGG +G GG G + GG G+G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG------- 53 Query: 383 AGSGGTGGSAVGLVGNGGTGGAGGLGPIGGAGGNGGGGGLIGNGGNGGAGGAASATVGTP 442 + G G G GG G GG+G GG L G A +T G Sbjct: 54 ----------IHWGGGSGHGNGGGNG--NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101 Query: 443 APGVGGNGGA 452 V + GA Sbjct: 102 GLAVSISAGA 111 Score = 32.0 bits (72), Expect = 0.009 Identities = 30/100 (30%), Positives = 33/100 (33%) Query: 231 GGAGGNGGAGGSPTVPGHAGGNGGSGGIGGAGGVFGNGGAGGNGGIGGTGGTGGNGGIGG 290 GG G G T GG G G GGA G G G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 291 NGAAGGAGGLWGDGGVGGNGAVGGNSGGGFGVMNDGGSGG 330 G G G G AV GF ++ G+GG Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGG 102 Score = 30.8 bits (69), Expect = 0.020 Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 269 GAGGNGGIGGTGGTGGNGGIGGNGAAGGAGGLWGDGGVGGNGAVGGNSGGGFGVMNDGGS 328 G G G G T GN G G G G G G N GG G G G+ GGS Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGG--GSGSGIHWGGGS 60 Query: 329 GGHGGDARLFGNGGNGGAGAVGGAGGN 355 G G G GN G G+ G + Sbjct: 61 GHGNG-----GGNGNSGGGSGTGGNLS 82 Score = 30.5 bits (68), Expect = 0.023 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 424 GNGGNGGAGGAASATVGTPAPGVGGNGGAAGLFGDGGNGGAGAPGLSGLGGAGGRGGYLI 483 G G N GA + G P G+G GGA+ +G + + GG G G + Sbjct: 6 GRGHNTGAHSTSGNINGGPT-GLGVGGGAS-------DGSGWSSENNPWGGGSGSGIHWG 57 Query: 484 GSGGNGGAGAGGGDGGYLSGNGGNGGDGVIVGNG----SAGGAGGNALGLFG 531 G G+G G G GG G V G S GAGG A+ + Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISA 109 Score = 30.1 bits (67), Expect = 0.030 Identities = 21/79 (26%), Positives = 28/79 (35%) Query: 143 GNGGNGFTQTGNNNVAGGNGGNAGLIGNGGAGGGGGTAFAGGNGGHGGLLYGNGGAGAIG 202 G G N + + N+ GG G G G G G G+ +G G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 203 GDGTGNGFGSLSGGGNGGS 221 G +G GS +GG Sbjct: 66 GGNGNSGGGSGTGGNLSAV 84 Score = 30.1 bits (67), Expect = 0.034 Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 4/80 (5%) Query: 464 AGAPGLSGLGGAGGRGGYLIGSGGNGGAGAGGGDGGYLSG----NGGNGGDGVIVGNGSA 519 +G G GA G + G G G G DG S GG G G+ G GS Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 520 GGAGGNALGLFGHGGAGGAG 539 G GG G G GG Sbjct: 62 HGNGGGNGNSGGGSGTGGNL 81
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 43.2 bits (101), Expect = 5e-07 Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 186 SSGGSPSPTPNPNPDPSPTPDPTPTPTPDPTPTPTPDPTPAPTPEPTPAPAPEPAPEPTP 245 + G + +P P P+ SP +P P P+ P P+P P P P P + P P Sbjct: 316 TPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRP 375 Query: 246 VEPA 249 PA Sbjct: 376 DSPA 379 Score = 40.9 bits (95), Expect = 3e-06 Identities = 18/51 (35%), Positives = 22/51 (43%) Query: 195 PNPNPDPSPTPDPTPTPTPDPTPTPTPDPTPAPTPEPTPAPAPEPAPEPTP 245 P P+ P P P P+ +P P PAP P P PEP P+ P Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNP 361 Score = 39.0 bits (90), Expect = 1e-05 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 2/72 (2%) Query: 177 LLPGCKAPSSSGGSPSPTPNPNPDPSPTPDPTPTPTPDPTPTPTPDPTPAPTPEPTPAPA 236 L PG + + P P +P +P+ P P P P P P PD P P+ P Sbjct: 315 LTPG--SAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPG 372 Query: 237 PEPAPEPTPVEP 248 P P P Sbjct: 373 TRPDSPAVPDRP 384 Score = 38.6 bits (89), Expect = 2e-05 Identities = 17/55 (30%), Positives = 21/55 (38%) Query: 191 PSPTPNPNPDPSPTPDPTPTPTPDPTPTPTPDPTPAPTPEPTPAPAPEPAPEPTP 245 P P P +P P P +P P P P P P P P P+ P+ P Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANP 365 Score = 33.2 bits (75), Expect = 0.001 Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 166 SQWPPLQQLLRLLPGCKAPSSSGGSPSPTPNPNPDPSPTPDPTPTPTPDPTPTPTPDPTP 225 ++ P Q L + P ++ + +P PNP+P P +P P D P PD Sbjct: 320 AEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPA 379 Query: 226 AP 227 P Sbjct: 380 VP 381 Score = 32.8 bits (74), Expect = 0.001 Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Query: 204 TPDPTPTPTPDPTPTPTPDPTPAPTPEPTPA--PAPEPAPEPTP-VEPAP 250 T D P PD TP P P PE +PA PA PAP P P P Sbjct: 304 TVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNP 353 Score = 28.9 bits (64), Expect = 0.022 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 206 DPTPTPTPDPTPTPTPDPTPAPTPEPTPAPAPEPAPEPTPV-EPAP 250 D T D P PD TP P P PE +P P PAP Sbjct: 298 DSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAP 343
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 51.7 bits (123), Expect = 3e-09 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 12/157 (7%) Query: 152 RLYAAPVTTNTQLLWYRPDLVAQPPETWNAVVAEAGRLRAAGQPTWIAVQANQGEGLMVW 211 +L A P+ L Y DL+ PP+TW + A L+A G+ A+ N E W Sbjct: 128 KLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKS---ALMFNLQEPYFTW 184 Query: 212 FNTVLSSVGGQVLSDDGTRVTLTDTPAHRAATVAALRVLKSVATAP--GADPSITRAEAG 269 ++++ GG + + + D A A L L + AD + AEA Sbjct: 185 --PLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEA- 241 Query: 270 TARLAFEQGKAALELNWPYVFASMLENAVKGGVPFLP 306 AF +G+ A+ +N P+ ++++ + V GV LP Sbjct: 242 ----AFNKGETAMTINGPWAWSNIDTSKVNYGVTVLP 274
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.9 bits (67), Expect = 0.006 Identities = 23/109 (21%), Positives = 25/109 (22%), Gaps = 1/109 (0%) Query: 19 PPPGEQPSEQPFSPPPDAPWAAPEAASPADDYPAPSYPPPAYPPEPVGPGGYPPDYATGY 78 PP QP +P P P PE A P P P+PV P Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121 Query: 79 PPPPGYPPPGYPPYGAAAGEYGGTPYPPPPPPPAPMAAPYGAPPPNYPP 127 P P P A P YP Sbjct: 122 ESRPASPFEN-TAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPA 169
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.6 bits (92), Expect = 1e-05 Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 3/113 (2%) Query: 332 PQMPAPPPPMFPWMQP---TPQPLAPQPGCTLICVTNPPEAVPPPAPMPFGLMPPPPAPA 388 ++PAP P+ M P A QP + P P P ++ P P Sbjct: 41 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 100 Query: 389 APPPPDPLAPLGAPPVGGPPAAPAPAPAGPAPAPAGPAPAPGAPVPAGPAPTP 441 P P P+ + P P PA APA P + + P + Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSV 153 Score = 30.7 bits (69), Expect = 0.008 Identities = 25/130 (19%), Positives = 34/130 (26%), Gaps = 6/130 (4%) Query: 319 DPLSHMPLIDFAPPQMPAPPPPMFPWMQPTPQPLA-PQPGCTLICVTNPPEAVPPPAPMP 377 P + + AP + P QP P+P+ P+P I V P P Sbjct: 45 APAQPISVTMVAPADLEPPQAV-----QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 378 FGLMPPPPAPAAPPPPDPLAPLGAPPVGGPPAAPAPAPAGPAPAPAGPAPAPGAPVPAGP 437 P P P + P+ + P P A P Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRA 159 Query: 438 APTPTPSGPA 447 P PA Sbjct: 160 LSRNQPQYPA 169 Score = 29.2 bits (65), Expect = 0.031 Identities = 17/79 (21%), Positives = 19/79 (24%), Gaps = 9/79 (11%) Query: 382 PPPPAPAAPPPPDPLAPLGA---------PPVGGPPAAPAPAPAGPAPAPAGPAPAPGAP 432 PP A PP P PV P P P P Sbjct: 61 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKP 120 Query: 433 VPAGPAPTPTPSGPAPGEP 451 V + PA + PA Sbjct: 121 VESRPASPFENTAPARPTS 139
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 79.7 bits (196), Expect = 4e-22 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Query: 1 MLVLVVVGLVVLGPERLPGAIRWSSGALRQARDYLSGVTSQLRDDMG-PEFDDLRGQLGE 59 +L++ ++GLVVLGP+RLP A++ +G +R R + V ++L ++ EF D ++ E Sbjct: 9 LLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKV-E 67 Query: 60 LQKLRGMTPR 69 L +TP Sbjct: 68 KASLTNLTPE 77
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 74.7 bits (183), Expect = 1e-16 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 204 RFTKVAAAVADSVVTIETKSDQEGMQGSGVIVDGRGYIVTNNHVISEAANNPSQFKTTVV 263 + T V I+ ++ SGV+V G+ ++TN HV+ +P K Sbjct: 78 QITDTTNGHYAPVTYIQVEAPTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPS 136 Query: 264 FNDGKEVP------ASLVGRDPKTDLAVLKVDNV-------DNLTVARLGNSDKVRVGDE 310 + P + + DLA++K + + A + N+ + +V Sbjct: 137 AINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQN 196 Query: 311 VLAVGAPLGLRSTVTEGIVSALHRPVPLSGEGSDTDTVIDAIQTDASINHGNSGGPLIDM 370 + G P V+ + +G T +A+Q D S GNSG P+ + Sbjct: 197 ITVTGYPGDKP-------VATMWE-----SKGKITYLKGEAMQYDLSTTGGNSGSPVFNE 244 Query: 371 DSQVIGINTAG 381 ++VIGI+ G Sbjct: 245 KNEVIGIHWGG 255
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 0.002 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 571 NTGLWNT-GNVNTGVGGTGTHSGNSGFGNSGTGNSGFFNSGSYNSGLINSSAGGYSSGVG 629 NTG +T GN+N G G G G S + N+ + S G G G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG 69 Query: 630 NSGGGGYNVGFFNSSAGGTDTGF 652 NSGGG G ++ A GF Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGF 92 Score = 33.5 bits (76), Expect = 0.003 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 415 SGSDNWGLANTGSTNWGAVNSGSLNTGIGNTGSTNTGWWNAGSVNDGLFNAGNANLGLAN 474 SG D G + G +N G G+G S +GW + + G +G G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 475 SGNGNLGGFNSGGGTSA 491 GNG G NSGGG+ Sbjct: 62 HGNGGGNG-NSGGGSGT 77 Score = 30.1 bits (67), Expect = 0.033 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 7/100 (7%) Query: 205 GGNSGPSSTSGGIGNIGFGNYGNSNVGAGNGNAALGVPGSSYPGASSYNVGAGNIGQFNI 264 G N+G STSG NI G G G + + + + G S + G Sbjct: 8 GHNTGAHSTSG---NINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 265 GLGNFGSGNIGFGNGNLVTAVA----GNPSASNVGAANIG 300 G GN SG GNL A G P+ S GA + Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 29.7 bits (66), Expect = 0.046 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 184 GIGNIGNFNVGSGNFGSYNFGGGNSGPSSTSGGIGNIGFGNYGNSNVGAGNGNAALGVPG 243 G + N G G + GG G GG GN G G+ N+ A A G P Sbjct: 38 GWSSENNPWGGGSGSGIHWGGGSGHGNG---GGNGNSGGGSGTGGNLSAVAAPVAFGFPA 94 Query: 244 SSYPGA 249 S PGA Sbjct: 95 LSTPGA 100
>cloacin#Cloacin signature. Length = 551 Score = 48.2 bits (114), Expect = 1e-07 Identities = 30/79 (37%), Positives = 34/79 (43%) Query: 329 GGSGDGSGTGTGGTGSGSGGTGDTGGTGSGTGDTGGTGSGGTGDTGGTGSGTGDTGGTGT 388 GG G G TG T G G G G D G S GG+GSG GG+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 389 GTGSGTGDTGDTGDTGGTG 407 G G G G++G TGG Sbjct: 63 GNGGGNGNSGGGSGTGGNL 81 Score = 45.1 bits (106), Expect = 1e-06 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 332 GDGSGTGTGGTGSGSGGTGDTGGTGSGTGDTGGTGSGGTGDTGGTGSGTGDTGGTGTGTG 391 GDG G TG + G G G G G + G+G + G GSG+ G G G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGS----GIHWGGG 59 Query: 392 SGTGDTGDTGDTGGTGGTGGTG 413 SG G+ G G++GG GTGG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNL 81 Score = 44.7 bits (105), Expect = 1e-06 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%) Query: 306 QGAQTGSYSEPTNLIVNGVSVGGGGSGDGSGTGTGGTGSGSGGTGDTGGTGSGTGDTGGT 365 +G TG++S N +NG G G G S G+G S GG+GSG GG+ Sbjct: 7 RGHNTGAHSTSGN--INGGPTGLGVGGGASD----GSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 366 GSGGTGDTGGTGSGTGDTGG 385 G G G G +G G+G G Sbjct: 61 GHGNGGGNGNSGGGSGTGGN 80 Score = 42.0 bits (98), Expect = 9e-06 Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 4/117 (3%) Query: 105 MGGGGAQGDS--AAQSGGGGNAGQAAEGASSGQAAASGGAVSPNSIAAGATNTTAASAVM 162 M GG +G + A + G N G G G + SG + N G+ + Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 163 SGGTGNGGAISGGGAAGSGGASGATTAAATGGGELG--GSGGVAALSSAAATTATVS 217 G G G SGGG+ G S A G L G+GG+A SA A +A ++ Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIA 117 Score = 38.9 bits (90), Expect = 8e-05 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 350 GDTGGTGSGTGDTGGTGSGGTGDTGGTGSGTGDTGGTGTGTGSGTGDTGDTGDTGGTGGT 409 GD G +G T G +GG G G + +G + G G GG+G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG 63 Query: 410 GGTGGTGDTGDTGDTGGTGDGTGT 433 G GG G++G TGG Sbjct: 64 NG-GGNGNSGGGSGTGGNLSAVAA 86 Score = 38.5 bits (89), Expect = 1e-04 Identities = 22/71 (30%), Positives = 32/71 (45%) Query: 383 TGGTGTGTGSGTGDTGDTGDTGGTGGTGGTGGTGDTGDTGDTGGTGDGTGTGTGDGGDTG 442 +GG G G +G T + G TG G G + +G + + G G+G+G GG +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 443 GSGTGGTVGDG 453 GG G Sbjct: 62 HGNGGGNGNSG 72 Score = 32.0 bits (72), Expect = 0.011 Identities = 26/79 (32%), Positives = 27/79 (34%) Query: 307 GAQTGSYSEPTNLIVNGVSVGGGGSGDGSGTGTGGTGSGSGGTGDTGGTGSGTGDTGGTG 366 GA GS N G S G G GSG G GG SGG TGG S G Sbjct: 32 GASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Query: 367 SGGTGDTGGTGSGTGDTGG 385 G G + G Sbjct: 92 FPALSTPGAGGLAVSISAG 110
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.020 Identities = 44/195 (22%), Positives = 69/195 (35%), Gaps = 49/195 (25%) Query: 11 LTAAASDVAGIGTTISSANAAASAPTTGVLAAAGDQVSAQVAALFSSHGEIY---QRLSS 67 L + ++ I + +NA A T AAAG +++ +V Y QR + Sbjct: 242 LDTVSGILSAISASFILSNADAD---TRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQ 298 Query: 68 QLSTFHDQFAAALNTSANSYA---------SAEANAAKTL------LSAVNSPAEKLLGQ 112 LST AA L SA + A + + A + + + LL Sbjct: 299 GLST--SAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAA 356 Query: 113 PLMGQGGIVANAVSQVQSVFAGAGSNALGANASMLALAPTGGAATAAASGSLLGPIASAA 172 G I A +++ + +V LA +AAA+ SL+G Sbjct: 357 FHKETGAIDA-SLTTISTV-----------------LASVSSGISAAATTSLVG------ 392 Query: 173 AAPAAILPVSVATAI 187 AP + L V T I Sbjct: 393 -APVSAL-VGAVTGI 405
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 3e-12 Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 10/192 (5%) Query: 13 RSRRRGEVLERALYSATLAELIAVGYGRLTMEGIAARAQTGKAALYRRWASKHDLVQAAL 72 ++++ + + + L G ++ IA A + A+Y + K DL Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 73 QYAVPPPPE------PRPGRSARENLLTVFTAHRDVLAGKTEFPGLVAI----GQLIHEP 122 + + E + L + + + L+ I + + E Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 123 ELRAIFANSVVHPRLKIIDSVLRAAIREGDLDPDTVTPFTARIGPALMNQHFILTGTPPN 182 + ++ I+ L+ I L D +T A I ++ P Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 183 RRELALIVDTVI 194 +L + Sbjct: 184 SFDLKKEARDYV 195
>PF07132#Harpin protein (HrpN) Length = 356 Score = 32.4 bits (73), Expect = 0.006 Identities = 58/217 (26%), Positives = 88/217 (40%), Gaps = 6/217 (2%) Query: 189 LLGGQVPGAQIGAGLSGVVQTGQSLAGSFNAALSGMGTQLSAALSGSLSAGLPDLSSLGV 248 L GG I AG +G + QS + + S G Q S ++ LS + + +G Sbjct: 5 LGGGASLQITIKAGGNGGLFPSQSSQNGGSPSQSAFGGQRSN-IAEQLSDIMTTMMFMGS 63 Query: 249 QLGAGLSGDLSA---GLPSVSGLVQTGQVLAGSFNDAVGGLGSRVAGVLSGAVGGELPDL 305 +G GL G L L + G + G + G + GLGS + G L GA+G + + Sbjct: 64 MMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGMNAM 123 Query: 306 SGLVQAGAVLMGGVGTALSGLGAQLSAALSGSLGTAVPGLSALIQ-TGESLAGGFNAALG 364 + G++L + L G +Q L G+ + P +SA Q ++L+ L Sbjct: 124 NPSAMMGSLLFSALEDLLGGGMSQQQGGLFGNKQPSSPEISAYTQGVNDALSAILGNGLS 183 Query: 365 -TLGTQVSGMLSGGLGGGLPGLAALIQTGESLAGGFG 400 T G L GL G A Q G +L G Sbjct: 184 QTKGQTSPLQLGNNGLQGLSGAGAFNQLGSTLGMSVG 220 Score = 30.8 bits (69), Expect = 0.020 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 1/139 (0%) Query: 283 VGGLGSRVAGVLSGAVGGELPDLSGLVQAGAVLMGGVGTALSGLGAQLSAALSGSLGTAV 342 +G + G G +G L L G + G + G + SGLG+ L L G+LG + Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGAGM 120 Query: 343 PGLSALIQTGESLAGGFNAALGTLGTQVSGMLSGGLGGGLPGLAALIQ-TGESLAGGFGT 401 ++ G L LG +Q G L G P ++A Q ++L+ G Sbjct: 121 NAMNPSAMMGSLLFSALEDLLGGGMSQQQGGLFGNKQPSSPEISAYTQGVNDALSAILGN 180 Query: 402 GLTGFMGGVDVLGNLGGEL 420 GL+ G L L Sbjct: 181 GLSQTKGQTSPLQLGNNGL 199
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.7 bits (69), Expect = 0.020 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 21/129 (16%) Query: 416 GGISKDGRQLTLVIGVAANDPTSVAVANTAADQLRNVGIAASV--LALDPVTLYGDALND 473 G + K Q + A TS A A G+ AS LA+ P++ A Sbjct: 281 GNVGKGISQYIIAQRAAQGLSTSAAAA----------GLIASAVTLAISPLSFLSIADKF 330 Query: 474 NRVDAIVGWHQA----GGNLATLLASRY---GC--PALQTTEVWEPTIPANTPAATTGSM 524 R + I + Q G + +LLA+ + G +L T ++ + AA T S+ Sbjct: 331 KRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSL 390 Query: 525 PSAVPSAVT 533 A SA+ Sbjct: 391 VGAPVSALV 399
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 190 bits (485), Expect = 1e-54 Identities = 106/447 (23%), Positives = 174/447 (38%), Gaps = 62/447 (13%) Query: 1 MLFRNVAIVAHVDHGKTTLVDAMLRQSGALTERGEVQE--RVMDSGDLEREKGITILAKN 58 M N+ ++AHVD GKTTL +++L SGA+TE G V + D+ LER++GITI Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 59 TAVHRHHPDGTVTVINVIDTPGHADFGGEVERGLSMVDGVLLLVDASEGPLPQTRFVLRK 118 T+ + T +N+IDTPGH DF EV R LS++DG +LL+ A +G QTR + Sbjct: 61 TSFQWEN-----TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 119 ALSAHLPVILVVNKTDRPDARIKEVVEASHDLLLDVA----------------SDLDDEA 162 +P I +NK D+ + V + + L ++ Sbjct: 116 LRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQW 175 Query: 163 AAAAEHALGLPTLYASG------------RAGIAS-TIEPA-DGQAPDGTNLDPLFDVLL 208 E L Y SG + ++ P G A + +D L +V+ Sbjct: 176 DTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT 235 Query: 209 EHVPPPQGDSEAPLQALVTNLDASAFLGRLALVRIYNGKLRKGQQVAWLREVDGVPVVTS 268 ++ L V ++ S RLA +R+Y+G L V + Sbjct: 236 NKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR-------ISEKEK 288 Query: 269 AKITELLATEGVERSTTDEAVAGDIVAVAGLP---EIMIGDTLADPDHAHALPRITVDEP 325 KITE+ + E D+A +G+IV + ++GDT P I P Sbjct: 289 IKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRER----IENPLP 344 Query: 326 AISVTVGTNTSPLAGKVSGHKLTARMVRGRLDTELIGNVSIRVVDIGRPDAWEVQGRGEL 385 + TV + + L + +R + G++ Sbjct: 345 LLQTTVEPSKPQQREM----------LLDALLEISDSDPLLRYYVDSATHEIILSFLGKV 394 Query: 386 ALAVLVETMRRE-GFELTVGKPQVVTK 411 + V ++ + E+ + +P V+ Sbjct: 395 QMEVTCALLQEKYHVEIEIKEPTVIYM 421 Score = 42.9 bits (101), Expect = 3e-06 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 416 QLHEPFEAMTIDCPDEFVGAITQLMAGRKGRMEEMTNHAAGWVRMDFIVPSRGLIGFRTD 475 +L EP+ + I P E++ + + T V + +P+R + +R+D Sbjct: 534 ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVD-TQLKNNEVILSGEIPARCIQEYRSD 592 Query: 476 FLTLTRGTGIANAVFDGYRPWAGE 499 T G + GY GE Sbjct: 593 LTFFTNGRSVCLTELKGYHVTTGE 616
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.034 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 18/87 (20%) Query: 343 LVPLMIWLLSGPLRDRLGARILGW---------GWLALTVIGVPWLLSFAQPTIWQI--- 390 + LM +L+ R + + A VIG+ W A +IW++ Sbjct: 47 AISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWF--VANTSIWRLLAF 104 Query: 391 ----GRPWYLAWAGLVYVVATLATLGW 413 + L A + + T W Sbjct: 105 INTKPVAFTLPLALSIIFNVVVVTFMW 131
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 33.3 bits (76), Expect = 0.001 Identities = 10/56 (17%), Positives = 21/56 (37%) Query: 46 LPALAQLSPIIQQAAGNPEQATQLLMAAAQAFAHNPAAPTESRNVASSVNQFVQEP 101 +L+QL ++ + P + ++L A P S V ++ +E Sbjct: 115 NISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQALVSMAEEQ 170
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.7 bits (165), Expect = 6e-16 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 11/164 (6%) Query: 9 ARAPRGSGDLLRHEILDAATELLLQTRQARAVSIRSVAERVGVTPPSIYLHFQDKDALLD 68 AR + R ILD A L Q + + S+ +A+ GVT +IY HF+DK L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQ-QGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 69 AVCARYLARLDE-EMERAAMGHTCVVEVLRAQGLAYVRFALQTPELYRLATM-------- 119 + + + E E+E A + VLR + + + L + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 GEWRSGSNVDSALDSSAFRHMCASVQAMMDEGIYRAD-DPTTIA 162 GE L ++ + +++ ++ + AD A Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 53.3 bits (128), Expect = 4e-09 Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 29/233 (12%) Query: 186 LIAIPLSFLVLVWVFGGLLAAALPMALGALAVVGSMSVLRLVTFTTDVSIFALNLSTALG 245 AI L FLV+ + A +P + ++G+ ++L ++ +N T G Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYS-------INTLTMFG 397 Query: 246 LALAI-----DYTLLIISRYRDELAEGSSREEALVRTMATSGRTVLFSAVT---VALSMS 297 + LAI D +++ + R + + +EA ++M+ ++ A+ V + M+ Sbjct: 398 MVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMA 457 Query: 298 ATVAFPMYFLKSFAYAGVATVAFVATASIVVTPAAIVLLGPRLDALNVRRLARRMLGRPE 357 + F+ V+ +A ++++TPA L ++ ++ Sbjct: 458 FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL--------LKPVSAEHHENKG 509 Query: 358 PQHKPVDQLF------WYRSTKFVMRRALPVGLAVVAVLVILGLPFFSVKWGF 404 + F + S ++ L ++ + + F + F Sbjct: 510 GFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSF 562 Score = 40.6 bits (95), Expect = 3e-05 Identities = 42/233 (18%), Positives = 81/233 (34%), Gaps = 27/233 (11%) Query: 116 SAPDLVSKDGKSGL-IVVNIKGGES--NAQKNAQTLADEIVHDRDGVTVRAGGSAMEYAQ 172 +P L +G + I G S +A + LA ++ G+ G + + Sbjct: 811 GSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLP---AGIGYDWTGMSYQERL 867 Query: 173 INKQNQDDLLVMELIAIPLSFLVLVWVFGGLLAAALPMALGALAVVGSMSVLRLVTFTTD 232 Q + I+ + FL L ++ M + L +VG + L D Sbjct: 868 SGNQ----APALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKND 923 Query: 233 VSIFALNLSTALGLALAIDYTLLIISRYRDEL-AEGSSREEALVRTMATSGRTVLFSAVT 291 V F + L T +G L+ +LI+ +D + EG EA + + R +L +++ Sbjct: 924 V-YFMVGLLTTIG--LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLA 980 Query: 292 VALSMSATVAFPMYF--------LKSFAYAGVATVAFVATASIVVTPAAIVLL 336 L + P+ + + + +I P V++ Sbjct: 981 FILGV-----LPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.8 bits (178), Expect = 2e-17 Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 19/205 (9%) Query: 3 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE---DVVADLGDRARFA---AAD 56 I +A +TG A G+G A + L GA + +D E VV+ L AR A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 57 VTDEAAVASALD-LAETMGTLRIVVNCAGTGNAIRVLSRDGVFPLAAFRKIVDINLVGSF 115 V D AA+ + MG + I+VN AG +R + + +N G F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGV---LRPGLIHSL-SDEEWEATFSVNSTGVF 121 Query: 116 NVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIAR 175 N R ++ + G I+ S A + AAY++SK V T + Sbjct: 122 NASRSVSKYM--------MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173 Query: 176 DLASHRIRVMTIAPGLFDTPLLASL 200 +LA + IR ++PG +T + SL Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSL 198
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 60.2 bits (146), Expect = 4e-12 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 18/123 (14%) Query: 9 LVTGATGYIGARLVPRLLDEGHRVRAL---------ARDPGKLADVPWRDRAEVVRGDLG 59 LVTGA G+IG + RLL+ GH+V + + +L + + + + DL Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKIDLA 62 Query: 60 DTDSLEAAFA--GMDVVYYLVH------SMGSAKHFADEEARAAHNVVLAARRSGVRRVV 111 D + + FA + V+ H S+ + +AD N++ R + ++ ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 112 YLS 114 Y S Sbjct: 123 YAS 125
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.021 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 43 EVADASKTDMHRAIDAARRAFDETDWSTNRALRKRCLEQLQEAIEAEREELREEL 97 +V +A++ + R +DA+R A + + + LE+ + EA R+ LR +L Sbjct: 305 QVLNANRQSLRRDLDASREAKKQLE------AEHQKLEEQNKISEASRQSLRRDL 353
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 1e-13 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 4/191 (2%) Query: 16 RRTEILQTAAALIASSGLR-TSLQEIADAAGILPGSLYHHFESKEAILIELIRRYQDDLH 74 R IL A L + G+ TSL EIA AAG+ G++Y HF+ K + E+ + ++ Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 75 Q-IGQSWQAKLDQPDSRTVAEKITQLGAAIANCAVAHRAALQMSFYEGPSADPELMKLTS 133 + + P S I L + + + E + + Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 134 QRPLAIQEAMLQTLRAGRWSGCIRTEIDLPTLADRI--CQTMLQVGLDMMRRNASADQVS 191 L + + QTL+ + + ++ A + + L ++ + + Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEA 191 Query: 192 GLMCRTILQGL 202 +L+ Sbjct: 192 RDYVAILLEMY 202 Score = 46.2 bits (109), Expect = 6e-08 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 7/149 (4%) Query: 234 ADPSDKAAHVRAVARIEFGRKGYEVTTIRDIASASGLATGTVYRVIGSKDKLLASIM-RS 292 + + H+ VA F ++G T++ +IA A+G+ G +Y K L + I S Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 293 FGQKVEAGWVAVLRSNATPIEKLDALSWVNINALDQFSDEFRIQLAWMRQSPPDTPNPGW 352 E + P+ L + + + + + Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 353 LYAARLRQ------MKSLLSEGLRSAEIQ 375 A R ++ L + + + Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.1 bits (140), Expect = 4e-12 Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 54/277 (19%) Query: 10 DGKRALIVGGATGMGAAAAKSAAELGAEIIVMDYAPVGYDA-----------AQTLSVDL 58 +GK A I G A G+G A A++ A GA I +DY P + A+ D+ Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 59 RDPASIDSAVERLG---GPVHAVFSAAGVADGPDLMKINFIGHRHLIDRLLANDQLPSGS 115 RD A+ID R+ GP+ + + AGV R L Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVL------------------RPGLIHSLSD-E 107 Query: 116 AVCFISSVAGMGWENDLPRLTEFLATPDYGAAQDWVS--AHEAE-GIIHYGFSKKAINAY 172 SV G N +++++ G+ S A + Y SK A + Sbjct: 108 EWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMF 167 Query: 173 VATRAYPLLKRGIRINAICPGPTDTPLAQANADLWLT----------FAQDYRDETG--- 219 L + IR N + PG T+T + + LW + ++ TG Sbjct: 168 TKCLGLELAEYNIRCNIVSPGSTETDMQWS---LWADENGAEQVIKGSLETFK--TGIPL 222 Query: 220 SKVHTPEQMGDVMVFLNSAAAFGISGITLLVDYGHTM 256 K+ P + D ++FL S A I+ L VD G T+ Sbjct: 223 KKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGATL 259
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.3 bits (84), Expect = 5e-05 Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 35/185 (18%) Query: 3 RVVVFGGHGKVALLLGHILADRGDQVSSV-----FRNP---DHRDDIAAT-GATPVQADI 53 + +V G G + + L + G QV + + + R ++ A G + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 54 EGLDTAALAGLLTGH--DAVVFSAGAGG-----GNPARTYAVDRDAAIRVIDAATRAGVQ 106 D + L + V S NP + + +++ +Q Sbjct: 62 A--DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 107 RFVMVS---YFGAGPNHGVSVDDS----FFPYAQAKAAAD--AHLRASNLD--------W 149 + S +G S DDS YA K A + AH + + Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 150 TVLGP 154 TV GP Sbjct: 180 TVYGP 184
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 76.4 bits (188), Expect = 9e-17 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 5/99 (5%) Query: 389 LAYTDVDEALDAADRGEQVILVRDHTRPEDVSGMLA--AQGIVTEIGGAASHAAVVSREL 446 L + E A E+ +++ + P D + + +G T+IGG SH+A++SR L Sbjct: 139 LGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSL 198 Query: 447 GRVAVVGCGDGVATSLAGKRITVDGYTGEVREGILAPSA 485 AVVG + G + VDG G V I+ P+ Sbjct: 199 EIPAVVGTKEVTEKIQHGDMVIVDGIEGIV---IVNPTE 234
>cloacin#Cloacin signature. Length = 551 Score = 33.5 bits (76), Expect = 0.002 Identities = 26/73 (35%), Positives = 31/73 (42%) Query: 154 GGNGGSAGLLGNGGNGGAGGAGAAGASGVSGQAGGSGGMGGSGGLLYGLGGTGGLGGLGG 213 G N G+ GN G G GAS SG + + GG G GG G G GG Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 214 NGGAATTAGTNGG 226 NG + +GT G Sbjct: 68 NGNSGGGSGTGGN 80 Score = 33.5 bits (76), Expect = 0.002 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 15/104 (14%) Query: 207 GLGGLGGNGGAATTAGTNGGAGGDGGLGGRGGFLFGDGGLGGQGGDGGDATGSTNAAGTG 266 G G G N GA +T+G G G+GG G G G + + G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGG-----------GASDGSGWSSENNPWGGGSG 51 Query: 267 GTAGSAGNGGDGGHSGWLYGNGGNGGNTGNGGTFQASADTILSG 310 G G G G NG +GG +G GG A A + G Sbjct: 52 SGIHWGGGSGHGNGGG----NGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 33.5 bits (76), Expect = 0.002 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 406 GFGGTGGQGGLFGNGGN--GGSGGNGGDGGGGARNGADAGPGALGGQGGSALLFGNGGAG 463 G G G G GN GG G G GG +G + GG GS + +G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 464 GDGGATGTPGTYSDGTGTGS 483 G+GG G G S G S Sbjct: 63 GNGGGNGNSGGGSGTGGNLS 82 Score = 32.8 bits (74), Expect = 0.004 Identities = 27/102 (26%), Positives = 32/102 (31%) Query: 354 AGAGGDGAFGGNGGNGGFIWGNGGVGGDAGDGAAGGAGTNNFQSYAGAGGFGGFGGTGGQ 413 +G G G G G I G G G + G ++ + G G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 414 GGLFGNGGNGGSGGNGGDGGGGARNGADAGPGALGGQGGSAL 455 G G GN G G G G AL G L Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103 Score = 32.4 bits (73), Expect = 0.005 Identities = 27/90 (30%), Positives = 33/90 (36%) Query: 186 AGGSGGMGGSGGLLYGLGGTGGLGGLGGNGGAATTAGTNGGAGGDGGLGGRGGFLFGDGG 245 +GG G +G GG GLG GGA+ +G + GG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 246 LGGQGGDGGDATGSTNAAGTGGTAGSAGNG 275 G GG+G GS A G Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 32.4 bits (73), Expect = 0.006 Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 22/107 (20%) Query: 250 GGDG-GDATGSTNAAGT--GGTAGSAGNGGDGGHSGWLYGNGGNGGNTGNGGTFQASADT 306 GGDG G TG+ + +G GG G GG SGW N GG +G+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG--------- 53 Query: 307 ILSGAGGGNFAVTGGNGGDSGLFGMGGAGGNGGNGGAGQAAAGDVTF 353 GGG+ GG G+S GG G GG A A V F Sbjct: 54 --IHWGGGSGHGNGGGNGNS--------GGGSGTGGNLSAVAAPVAF 90 Score = 31.6 bits (71), Expect = 0.010 Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Query: 274 NGGDG-GHSGWLYGNGGN--GGNTGNGGTFQASADTILSGAGGGNFAVTGGNGGDSGLFG 330 +GGDG GH+ + GN GG TG G AS SG N GG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDG---SGWSSENNPWGGGSGSGIHWGG 58 Query: 331 MGGAGGNGGNGGAGQAAAGDVTFAGAGGDGAFG 363 G G GGNG +G + + AFG Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91 Score = 31.2 bits (70), Expect = 0.011 Identities = 22/78 (28%), Positives = 27/78 (34%) Query: 120 NGANGAAGTGAAGGDGGWLYGNGGNGGSGAAGQAGGNGGSAGLLGNGGNGGAGGAGAAGA 179 +G +G A G + G G G G S GG+G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 180 SGVSGQAGGSGGMGGSGG 197 G G G SGG G+GG Sbjct: 62 HGNGGGNGNSGGGSGTGG 79 Score = 31.2 bits (70), Expect = 0.013 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 120 NGANGAAGTGAAGGDGGWLYGNGGNGGSGAAGQAGGNGGSAGLLGNGGNGGAGGAGAAGA 179 N + GG G G G + GSG + + GG +G GG G G G Sbjct: 10 NTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSG--SGIHWGGGSGHGNGGG 67 Query: 180 SGVSGQAGGSGGMGGS 195 +G SG G+GG + Sbjct: 68 NGNSGGGSGTGGNLSA 83 Score = 31.2 bits (70), Expect = 0.014 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 422 NGGSGGNGGDGGGGARNGADAGPGALGGQGGSALLFGNGGAGGDGGATGTPGTYSDGTGT 481 +GG G G + GP LG GG + G+G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGG-----ASDGSGWSSENNPWGGGSGSGIHW 56 Query: 482 GSVYQTSDGGGGGDGGFFFGNGGKGGA-AGSIPAGFMAPSENGIGGTG 528 G +GGG G+ G G GG A A + GF A S G GG Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 30.5 bits (68), Expect = 0.021 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 120 NGANGAAGTGAAGGDG-GWLYGNGGNGG-SGAAGQAGGNGGSAGLLGNGGNGGAGGAGAA 177 NG G G DG GW N GG SG+ GG G GNG +GG G G Sbjct: 21 NGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Query: 178 GASGVSGQAGGSGGMGGSGGLLYGLGGTGG 207 ++ + A G + G + + G Sbjct: 81 LSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 30.2 bits (68), Expect = 0.019 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 149 GVFASWGSLGHVTVAEPGALIGFLGP-RVYELLYD 182 +F+ G L V + PG + L P + L+D Sbjct: 9 NIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFD 43
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 88.0 bits (218), Expect = 8e-21 Identities = 81/408 (19%), Positives = 151/408 (37%), Gaps = 33/408 (8%) Query: 26 FIVYLDTTVLLVAFGAISESFPEASSSARSWVLDAYFIVFAALMVPGGRWADQFGSRNVF 85 F L+ VL V+ I+ F ++ +WV A+ + F+ G+ +DQ G + + Sbjct: 24 FFSVLNEMVLNVSLPDIANDF-NKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 86 AIGVSTFILSSAGCAVAPTLGA-LVAARAAQAVGAALMGPASLALILPYFGRGSRATAVS 144 G+ S V + + L+ AR Q GAA + ++ Y + +R A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 145 LWGTSAALAAALGPPLGGFLADTVGWRGIFLINVPIGLAV-LAGLRNVDNRGDAVAGQLV 203 L G+ A+ +GP +GG +A + W +L+ +P+ + + L + + + G Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFD 200 Query: 204 NTSAIVLIASGVGALTAGILEGPSWGWGRRRTLLLLIAGAILLAAAMVRVARHHRRAE-P 262 I++ + +L S+ I+ + + +H R+ P Sbjct: 201 IKGIILMSV----GIVFFMLFTTSYSISF----------LIVSVLSFLIFVKHIRKVTDP 246 Query: 263 IHDFD--KGRFFAANAATA--IFGAGFYGLLLAVVFFLTSHWHYSTFEAG-LAMMPIFVA 317 D K F IFG G + V + + ST E G + + P ++ Sbjct: 247 FVDPGLGKNIPFMIGVLCGGIIFGT-VAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 318 AALAAIPAGRIADARGHRWAVIPGCWVFTLGVFLFWLLTTSRADYASRWLP--GSILCGI 375 + G + D RG + + G ++ LT S + W + Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVS-----FLTASFLLETTSWFMTIIIVFVLG 360 Query: 376 GIGCVMPVLASAAIDAMPGQLLGTANALNSMLRQFGAALGTAAVGTLL 423 G+ V+++ ++ Q G +L + G A VG LL Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.5 bits (141), Expect = 7e-13 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 7/180 (3%) Query: 11 ARVTKRRAE-TRARLVDAAFRVFADKGFGHVRIEDVCAAAGYTRGAFYSQFDSLEELFFT 69 AR TK+ A+ TR ++D A R+F+ +G + ++ AAG TRGA Y F +LF Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 70 LYDQRATLISEQVGTAMASV-DDPTDVPGTVDRIASTLLLDRDWLLIKTDFLMHAARHPD 128 +++ + I E A DP V + + + + + + H Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 129 LAQRLAAHRAQLRAAVEDRLAGSDVELPAAIGSVAD-----AARAVVAAYDGVSIQLLLD 183 + + L DR+ + A AD AA + G+ L Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 102 bits (257), Expect = 2e-27 Identities = 35/119 (29%), Positives = 58/119 (48%) Query: 11 PRVLVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGV 70 +LV DDD+ + L + L +G++V + A R D +V D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 71 SVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 129 ++ ++ D+PV V+SA+++ + E GA DYL KPF L EL+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 22/101 (21%) Query: 354 IANAVKHGGSTR-----VQLSAVSSRAGVEIAVDDNGSGVPEAERQMVFERFSRGSTASH 408 + N +KHG + + L V + V++ GS + ++ Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE-------------- 309 Query: 409 SGSGLGLALVAQQ-AHLHGGTASLQ-NSPLGGARLLLKLPG 447 +G GL V ++ L+G A ++ + G ++ +PG Sbjct: 310 -STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.001 Identities = 13/54 (24%), Positives = 21/54 (38%) Query: 24 IVTVSIKPVATTAEAVEAEQTEQPEQTEQTEQTEQTEQTEEPDPAESHQTEVAQ 77 I V PV A A +E TE + + E + ++ + EVA+ Sbjct: 1017 IARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Score = 25.0 bits (54), Expect = 0.039 Identities = 8/45 (17%), Positives = 16/45 (35%) Query: 33 ATTAEAVEAEQTEQPEQTEQTEQTEQTEQTEEPDPAESHQTEVAQ 77 T Q + P E+ + ++ P PA + +E + Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 105 bits (263), Expect = 4e-28 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 16/146 (10%) Query: 197 GQPAGSTPPTGPAATGACADLQAAVTALTGGAIAFGNDGVSLTPDSNKVLTQVVDKLRAC 256 G+ A P A ++Q L + F + +L P+ L Q+ +L Sbjct: 194 GEAAPVVAPAPAPA----PEVQTKHFTLKS-DVLFNFNKATLKPEGQAALDQLYSQLSNL 248 Query: 257 --PDAKVTVNGYTDNSGSEGLNIPLSAQRAQTVADFLVAHGVPTDHITAKGLGSANPIAS 314 D V V GYTD GS+ N LS +RAQ+V D+L++ G+P D I+A+G+G +NP+ Sbjct: 249 DPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTG 308 Query: 315 NDTAEGR---------IKNRRVEIVV 331 N + +RRVEI V Sbjct: 309 NTCDNVKQRAALIDCLAPDRRVEIEV 334
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.5 bits (66), Expect = 0.028 Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 97 LPNTDQLAQFTGRIQRHTMLHEDLKRFFDGFPRNA 131 LPN+ + Q +IQ E+L+ FDG+ NA Sbjct: 291 LPNSASIEQIQSKIQELGDTLEELRDSFDGYINNA 325
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 6e-14 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 5/164 (3%) Query: 20 KTAKLRAAQRVQRFLDAAQAIIIEKGSTDFTVQEVVDRSRQSLRSFYLQFDGKHELLLAL 79 + K A + Q LD A + ++G + ++ E+ + + + Y F K +L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 80 FEDALSRSADQIRAATE-THADPLERLKVAVELLYEASRPDPTAKRPLFTDFAPRLLVSH 138 +E + S + DPL L+ + + E++ + + + F V Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 139 PAEV----KVAHAPLVALLTELMEAAAEAGELREDLNPRRIAAM 178 A V + + + ++ EA L DL RR A + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAII 166
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (250), Expect = 2e-27 Identities = 82/282 (29%), Positives = 121/282 (42%), Gaps = 36/282 (12%) Query: 9 VAGKVAFITGAARGQGRSHAVRLAQEGADIIAVDVCKPIVENTTIPASTPEDLAETADLV 68 + GK+AFITGAA+G G + A LA +GA I AVD P E S+ + A A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVD-YNP--EKLEKVVSSLKAEARHAEAF 62 Query: 69 KGHNRRIFTAEADVRDYDALKAAVDAGVDELGRLDIIVANAGIGNGGATLDKTSEHDWQE 128 ADVRD A+ E+G +DI+V AG+ G S+ +W+ Sbjct: 63 P----------ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLI-HSLSDEEWEA 111 Query: 129 MIDVNLSGVWKSVKAAVPHLIAGGNGGSIVLTSSVGGMKAYPHCGNYVAAKHGVVGLMRS 188 VN +GV+ + ++ +++ GSIV S Y ++K V + Sbjct: 112 TFSVNSTGVFNASRSVSKYMMD-RRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKC 170 Query: 189 FAVELGQHMIRVNSVHPTHVRTPM-----LHNEGTFKMFRPDLENPGPDDMAPICQLFHT 243 +EL ++ IR N V P T M G ++ + LE Sbjct: 171 LGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLET-------------FK 217 Query: 244 LPIPW---VEAEDISNAVLFLASDESRYITGVTLPVDAGGCL 282 IP + DI++AVLFL S ++ +IT L VD G L Sbjct: 218 TGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.1 bits (210), Expect = 1e-21 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 1/188 (0%) Query: 3 GFAGRGAVITGGASGIGLATATEFARRGAKVVLADIDKPGLERSVEHLRGKGFDAHGVMC 62 G G+ A ITG A GIG A A A +GA + D + LE+ V L+ + A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVRHLSEVNHLAAESARLLGQIDVVFSNAGIVVAGPIADMTHDDWRWVIDIDLWGSIHTV 122 DVR + ++ + A R +G ID++ + AG++ G I ++ ++W ++ G + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 EAFLPKLL-EHGGHIAFTASFAGLVPNAGLGAYGVAKYGVVGLAETLSREMKDRGVGVTV 181 + ++ G I S VP + AY +K V + L E+ + + + Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 LCPMVVET 189 + P ET Sbjct: 185 VSPGSTET 192
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (266), Expect = 1e-29 Identities = 74/255 (29%), Positives = 119/255 (46%), Gaps = 19/255 (7%) Query: 10 LNGRVAVVTGAGSGIGRGVAAGLAAFGASVAIWERDPQTCAQAAAELGGLG-----IATD 64 + G++A +TGA GIG VA LA+ GA +A + +P+ + + L D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 65 VRSGDQVDAALQRTQAELGEVTILVNNVGGVFWSPLLQTSEKGWDALYRSNLGHVLLCTQ 124 VR +D R + E+G + ILVN G + + S++ W+A + N V ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 125 RVARRLVAAELPGSIMAITSIEGVRAAPGYAAYAAAKAGVVNYTKTAALELAHHGIRVNA 184 V++ ++ GSI+ + S AAYA++KA V +TK LELA + IR N Sbjct: 126 SVSKYMMDRR-SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 185 IAPDITMTEGLAQL-----------GGAAALERIGSLVPLGRPGDIDEIASVAVFLASDM 233 ++P T T+ L G+ + G +PL + +IA +FL S Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG--IPLKKLAKPSDIADAVLFLVSGQ 242 Query: 234 ARYVTGQTIHVDGGT 248 A ++T + VDGG Sbjct: 243 AGHITMHNLCVDGGA 257
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 17/108 (15%) Query: 11 ERASSTQEAILVAAERLFAEHGVFAVSNRQVSEAAGQGNNAAVGYHFGTKTDLVRAI--- 67 + A T++ IL A RLF++ GV + S ++++AAG A+ +HF K+DL I Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGV-TRGAIYWHFKDKSDLFSEIWEL 65 Query: 68 -------------EQKHRVPVERLREQMVAAAAAKGVAATMRDWVACL 102 + P+ LRE ++ + R + + Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEII 113
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 115 bits (289), Expect = 3e-33 Identities = 80/259 (30%), Positives = 123/259 (47%), Gaps = 7/259 (2%) Query: 5 LAGKIAIVTGGASGIGRATVARFIAEGARVVIADVEEERGESLAAALGADAMFC---RTD 61 + GKIA +TG A GIG A ++GA + D E+ E + ++L A+A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VSQPEQVAAVVAAAVENFGGLHVMVNNAGVSGVMHRRFLDDDLADFHRVMAVNVLGVMAG 121 V + + A G + ++VN AGV L D+ ++ +VN GV Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE--EWEATFSVNSTGVFNA 123 Query: 122 TRDAARHMAAHGGGSIVNLTSIGGIQAGGGVMTYRASKAAVIQFTKSAAIELAHYEIRVN 181 +R +++M GSIV + S + Y +SKAA + FTK +ELA Y IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 182 AIAPGNIPTPLLASSAAGMDQEQVERFTAQIRQTMREDRPLKREGTPEDIAEAALYFAGE 241 ++PG+ T + S A D+ E+ +T + PLK+ P DIA+A L+ Sbjct: 184 IVSPGSTETDMQWSLWA--DENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 242 RSRYVTGTVLPVDGGTVAG 260 ++ ++T L VDGG G Sbjct: 242 QAGHITMHNLCVDGGATLG 260
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.3 bits (71), Expect = 0.003 Identities = 13/29 (44%), Positives = 15/29 (51%) Query: 1 MKILVIGGSGLIGSQVVAQLTGLAHQAVA 29 MK LV G +G IG V +L HQ V Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVG 29
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.0 bits (135), Expect = 9e-11 Identities = 64/294 (21%), Positives = 108/294 (36%), Gaps = 9/294 (3%) Query: 11 NRPSRVLMINQFGINVGFYMLMPYLADYLA--GPLGLAAWAVGLVMGVRNFSQQGMFFVG 68 NRP V++ VG ++MP L L G+++ + Q V Sbjct: 4 NRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 69 GTLADRFGYKPLIVAGCLIRTGGFALLVVAQSLPSVLIASAATGFAGALFNPAVRAYVAA 128 G L+DRFG +P+++ +A++ A L + I G GA AV A Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG--AVAGAYIA 121 Query: 129 DS--GDRKLEAFAMFNIFYQAGILLGPLVGLALLTLDFRMTVLGASAVFAVLTAAQLMAL 186 D GD + F + + G++ GP++G + A+A+ + L Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 187 PQ-HLADPGTKNESILQGWKAIVRNRSFLGFAAAMTGAYVLSF--QVYLALPMQASLLAP 243 P+ H + L + R AA M +++ QV AL + Sbjct: 182 PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 244 GHQSVLVAAMFAVSGLIAIAGQLRITRWFAAHWRVSRSLVVGAAILAIAFVPLA 297 + + A G++ Q IT AA R+L++G ++ LA Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA 295