>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.9 bits (80), Expect = 2e-04 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 3/152 (1%) Query: 152 QLQLQDNQQVEGLATLDKYLEESKSQRPEDLILKGQALYQAERYKEAIPVLKQAIAASPE 211 + QL ++G T+ E S S E L YQ+ +Y++A V + Sbjct: 10 EYQLAMESFLKGGGTIAMLNEIS-SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHY 68 Query: 212 PKDTWNQLLMASYAEAGQTGEAVAAAEALAAKTPNDKKAQLNLASMYMQADQMDKAAAVM 271 + L A GQ A+ + A + + + A +Q ++ +A + + Sbjct: 69 DSRFFLG-LGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGL 127 Query: 272 DKLRA-AGQLTEEKEYKQLYSIYANTENKEKD 302 + TE KE S +K+ Sbjct: 128 FLAQELIADKTEFKELSTRVSSMLEAIKLKKE 159
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 36.4 bits (84), Expect = 1e-04 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 3/102 (2%) Query: 96 DPNQFNAYVMQAHLAVARGDLDEAARLSRTAARLVPEHPQLLAVDGLVEMRRGQNDRALS 155 Q + + + G ++A ++ + L + G GQ D A+ Sbjct: 35 TLEQLYSLAFNQYQS---GKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 91 Query: 156 LLTRAAEQLPDDARVLFSLGFAYLQKEHFAFAERAFERVIEL 197 + A + R F LQK A AE EL Sbjct: 92 SYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQEL 133
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.009 Identities = 9/50 (18%), Positives = 21/50 (42%) Query: 13 LAWLLLVVAVAAAGVALFLSWRAWQSYQAAQLQAAQAQQQRWDGTQQMLE 62 L+ + VV V L+ W +++Y+ A++ + + L+ Sbjct: 118 LSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALK 167
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 195 bits (497), Expect = 8e-67 Identities = 64/162 (39%), Positives = 100/162 (61%), Gaps = 3/162 (1%) Query: 1 MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQR 60 MS+E AA A P I++IYVKDVSFE+PN P +F +P+L +L+ + ++ Sbjct: 1 MSEENQVNAAD-TQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQ 59 Query: 61 LNDNAFEVVLAVTLTCTA--GGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFP 118 + D+ +EV L +++ T G A++ EV+QAGVF + GL+ + L +QCPN+LFP Sbjct: 60 VGDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFP 119 Query: 119 YVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNESAS 160 Y R LVS L+ G FP L P+NF+AL+ + L++++ + Sbjct: 120 YARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQT 161
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 27.6 bits (61), Expect = 0.033 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 12/95 (12%) Query: 49 KASYAIAPNFHVFGE----YSKQNADDNNNLFENTNSDFQQWGVGVGFNHEIATSTDFVA 104 K Y I + ++ + + N + + GV E A + + Sbjct: 103 KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGV----EYAITPEIAT 158 Query: 105 RVAYRRL----DLDSPNINFDGYSVEAGLRNAFGE 135 R+ Y+ D + D + G+ FG+ Sbjct: 159 RLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQ 193
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 472 bits (1215), Expect = e-166 Identities = 177/476 (37%), Positives = 257/476 (53%), Gaps = 37/476 (7%) Query: 4 ILIIDDDAAFRTTLQATLRSFGHTVVAADNGPDGLARLSEGGIDMALVDFRMPGMDGIAV 63 IL+ DDDAA RT L L G+ V N ++ G D+ + D MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LRARLDDAQARQVPLVMLTAHVSSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALLSRA 123 L R+ A+ +P+++++A + I+A GA+D+L KP +++ ++ RAL Sbjct: 66 LP-RIKKARPD-LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 124 DAQAAATETPQAPHEDDDALVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELAARA 183 + + Q LVG S AM+ +++ + +DL ++ITGE+GTGKEL ARA Sbjct: 124 RRPSKLEDDSQDGMP----LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179 Query: 184 LHRASPRAKAPFVAVNCAAIPLELMESELFGHRKGAFSGASSDRLGLIREADGGTLFLDE 243 LH R PFVA+N AAIP +L+ESELFGH KGAF+GA + G +A+GGTLFLDE Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239 Query: 244 IGDMPLPMQAKLLRFLQEGEVTPLGGSGPQKVDVRVLAATHRDLAACVADGRFRSDLRYR 303 IGDMP+ Q +LLR LQ+GE T +GG P + DVR++AAT++DL + G FR DL YR Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299 Query: 304 LNVVPIELPPLRERGQDILLLAQHFLSTNAA---RAQSLSPAAQERLLAHRWPGNVRELR 360 LNVVP+ LPPLR+R +DI L +HF+ + A E + AH WPGNVREL Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 361 NVMQRSQVMVRGASIDAADLD----------------------------EALAEAAEATP 392 N+++R + I ++ E A+ Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 393 DVASPMTGTLPEAVARLEKQMIQSALEQSHGNRAEAARRLGIHRQLLYRKLEEYGL 448 A P +G +A +E +I +AL + GN+ +AA LG++R L +K+ E G+ Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 65/374 (17%), Positives = 123/374 (32%), Gaps = 12/374 (3%) Query: 30 PFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVVGCLAILLAT 89 P L L A G ++++ + GAL D R R V++V + Sbjct: 29 PGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGR-RPVLLVSLAGAAVDY 87 Query: 90 ALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHAHGFDHQLARNQVANHAGNVL 149 A++ P + +I + + A G + G V Sbjct: 88 AIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADITDGDERARHFGFMSACFGFGMVA 146 Query: 150 AAVLAGWLGWRYGFAAVFLLTAFFGVLALVAVLAIPAAAIDHRAARGLASNDNGDALSGW 209 VL G +G + A F A L + + + H+ R + + L+ + Sbjct: 147 GPVLGGLMG-GFSPHAPFFAAAALNGLNFLTGCFLLPES--HKGERRPLRREALNPLASF 203 Query: 210 RVLLTCRPLALLAVTLGLFHLGNAAMLPLYGMAIVAAHAGDPSALTATIIVVAQATMVVV 269 R +A L + L L+ + D + + ++ + Sbjct: 204 RWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQ 263 Query: 270 ALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAGLQSVVVPA 329 A++ G L++ +A ++ A GW FP+ +L G + +PA Sbjct: 264 AMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGG----IGMPA 319 Query: 330 LVARLLQGTGRVNVG--QGAVMTVQGIGAALSPAFGGWL-AHAFGYRTAFLALGAIALLA 386 L A L + G QG++ + + + + P + A + + + AL Sbjct: 320 LQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYL 379 Query: 387 VALWAGCRGMLQAA 400 + L A RG+ A Sbjct: 380 LCLPALRRGLWSGA 393
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 131 bits (330), Expect = 1e-37 Identities = 74/362 (20%), Positives = 129/362 (35%), Gaps = 78/362 (21%) Query: 1 MKLLVTGGGGFLGQALCRGLRARGHEVV-----------SFQRGDYPVLQSLGVGQIRGD 49 MK LVTG GF+G + + L GH+VV S ++ +L G + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 50 LADPQAVRHALA--GIDAVFHNAAKAG---AWGSYDSYHQANVVGTQNVIEACRATGVPR 104 LAD + + A + VF + + + + +Y +N+ G N++E CR + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 105 LIYTSTPSVTHRATNPVEGLGADE-VPYGDNLRAA-----YAVTKAIAERAVLAANDA-Q 157 L+Y S+ SV G + +P+ + YA TK E + Sbjct: 121 LLYASSSSV----------YGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 158 LATVALRPRLIWGP-GD-NHLLPRLAARARAGR-LRMVGDGSNLVDSTYIDNAAQAHFDA 214 L LR ++GP G + L + G+ + + G D TYID+ A+A Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 215 FEHLAVGAACA-------------GKAYFISNGEPLPMRELLNRLLAAVDAPAVTRSLSF 261 + + + Y I N P+ + + + L A+ A L Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPL 290 Query: 262 KTAYRIGAVCETLWPLLRLPGEVPLTRFLVEQLCTPHWYSMQPARRDFGYVPGISIEEGL 321 + PG+V T + G+ P ++++G+ Sbjct: 291 Q------------------PGDVLET-----------SADTKALYEVIGFTPETTVKDGV 321 Query: 322 QR 323 + Sbjct: 322 KN 323
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 24.0 bits (52), Expect = 0.029 Identities = 5/20 (25%), Positives = 9/20 (45%) Query: 28 TNIAWILFVVFLILAVISMF 47 +AW++ V LA + Sbjct: 32 KKLAWVVAGVAGALATAGVV 51
>PF05043#Transcriptional activator Length = 493 Score = 34.1 bits (78), Expect = 0.001 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCVPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F CV D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAH 139 + L+ H NTAH Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324
>cdtoxinb#Cytolethal distending toxin B signature. Length = 269 Score = 28.0 bits (62), Expect = 0.021 Identities = 12/24 (50%), Positives = 16/24 (66%) Query: 148 GVTIGDDALFGAGAVATRDVPAGA 171 G+ IG+DA F A A+A R+ A A Sbjct: 142 GIRIGNDAFFTAHAIAMRNNDAPA 165
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 65.3 bits (159), Expect = 1e-14 Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 4/247 (1%) Query: 12 NWIALATIVRREVQRILRIWGQTLVPPAITMTLYFLIFGGLIGSRVGEMGGYSYMQFIVP 71 NWIA + RR + +L+ +Y G +G VG +GG SY F+ Sbjct: 15 NWIA---VWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAA 71 Query: 72 GLVMMSVIQNS-YGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVSGAVLRGVMVGAI 130 G+V S + + + I ++F + R E +L + + I+ G ++ A + + GA Sbjct: 72 GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131 Query: 131 VLIIAMFFTPVRIPHPIVTLTTVLLGATIFSLAGFVNAVYAKKFDDVAIVPTFILTPLTY 190 + ++A + + L + L F+ G V A +D T ++TP+ + Sbjct: 132 IGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILF 191 Query: 191 LGGVFYSVKLLPGWAEAATHANPIFYMVNAFRYGLLGSSDVPIWVAYALMLGFVAVLSAL 250 L G + V LP + A P+ + ++ R +LG V + + ++ + L Sbjct: 192 LSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFL 251 Query: 251 ALWLLRR 257 + LLRR Sbjct: 252 STALLRR 258
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 28.1 bits (62), Expect = 0.041 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 15 IAPTVAHCQFVRDDGQPLDFQPGQFIQIHFDYADGTPTKRSYSLATIHD--HALGP 68 +A +A F+ D+ Q ++PG + F G+ + R+ + I D H +G Sbjct: 26 LAADLAQDPFITDNAQRQHYEPGGKYHL-FGDPRGSVSDRTGKINVIQDYTHQMGN 80
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 70.4 bits (172), Expect = 4e-16 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 1/145 (0%) Query: 180 QVEVKAKQAAEQKRLGEQQTREAAAAQQIAAQQEAARQQTAEAERQAAARRQAEAPASTP 239 + E + E + E+ + + + E ++ E + A+ + APA Sbjct: 79 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPT 138 Query: 240 AAPLPAPAATAAAAPAAQSLRPISTPAPHYPPEALRAGTSGEVLVELTVGTDGSITASRV 299 ++ A + + A+ R +S P YP A G+V V+ V DG + ++ Sbjct: 139 SSTATAATSKPVTSVAS-GPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQI 197 Query: 300 LRANPPRVFDREALNAVKHWRFEPV 324 L A P +F+RE NA++ WR+EP Sbjct: 198 LSAKPANMFEREVKNAMRRWRYEPG 222
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 66.4 bits (162), Expect = 1e-15 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 6/148 (4%) Query: 4 AEKGIVTKVQLLQQQDIAIQNQGQLEELQKHALDLRVEHCQLQLQLEQTPATLEA----K 59 K + K +L+Q++ ++ +L + + E + + + + K Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Query: 60 RNDIARQIADLAQSLSETGARCS-VVLRAPTDGMVTNLLVHA-GQPVGAQQPLITLLSKD 117 I L L++ R V+RAP V L VH G V + L+ ++ +D Sbjct: 304 LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPED 363 Query: 118 IALRAELWVPSKAVGFVTCGDRVLLRYQ 145 L V +K +GF+ G +++ + Sbjct: 364 DTLEVTALVQNKDIGFINVGQNAIIKVE 391 Score = 28.6 bits (64), Expect = 0.009 Identities = 7/32 (21%), Positives = 15/32 (46%) Query: 82 SVVLRAPTDGMVTNLLVHAGQPVGAQQPLITL 113 S ++ + +V ++V G+ V L+ L Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKL 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.2 bits (242), Expect = 1e-25 Identities = 29/117 (24%), Positives = 58/117 (49%) Query: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61 IL+ +D+A +R L L R G+ V + D+ + D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118 L+ ++ PVL+++A++++ ++ ++GA DYL KPF + EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.2 bits (68), Expect = 0.014 Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 11/141 (7%) Query: 160 LTFQGGSDLPNVSLRSIGKGGLDARQAQILSQMYDSTPLAAAARDGVALRQQVTAQLRDE 219 L+ L + GK + Q ++L + D+ L +Q + +E Sbjct: 110 LSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQALVSMAEE 169 Query: 220 MEQAAR----GAASARTFADETRRMATLMRERYRLGFVDVGG----WDT-HANQGSVEGG 270 + A + +R+ YR + G W + + Sbjct: 170 QGETIVLGARITPEAYRESQSGVNPLQPLRDTYRDAVMGYQGIYAIWSDLQKRFPNGD-- 227 Query: 271 LANNLRNLGEGLAAYADALGP 291 + + + L + L+A + Sbjct: 228 IDSVILFLQKALSADLQSQQS 248
>PF03309#Bvg accessory factor Length = 271 Score = 113 bits (284), Expect = 2e-32 Identities = 53/251 (21%), Positives = 92/251 (36%), Gaps = 23/251 (9%) Query: 5 LFDLGNSRFKYAPLHGNRAGQ--VQAWAHGAE--------AMDATALAALPSGQIAHVA- 53 D+ N+ + G+ VQ W E A+ L + ++ + Sbjct: 4 AIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAERLTGASG 63 Query: 54 SVAAPALTQRMIACLQERFTQV-RIVRTAAECAGIRIAYADPSRFGVDRFLALLGARG-- 110 P++ + L++ + V ++ GI + +P G DR + L A Sbjct: 64 LSTVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGADRIVNCLAAYHKY 123 Query: 111 DAPVLVAGVGTALTIDVLGDDGLHHGGRIAASPTTMREALHARAVQLPA---SGGDYVEL 167 +V G+++ +DV+ G GG IA +A AR+ L + V + Sbjct: 124 GTAAIVVDFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRPRSV-I 182 Query: 168 AIDTDDALTSG----CDGAAVALIERSLQHAQRSLGAPVRLLVHGGGAPPLLPLLPGA-T 222 +T + + +G G L+ R GA V ++ G AP +LP L Sbjct: 183 GKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPDLRTVEH 242 Query: 223 FRAALVLDGLA 233 + L LDGL Sbjct: 243 YDRHLTLDGLR 253
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 82.4 bits (203), Expect = 3e-19 Identities = 31/193 (16%), Positives = 70/193 (36%), Gaps = 40/193 (20%) Query: 110 LGSGVIIDAQKGYVLTNHHVIENADDVQVTL------------GDGRTVKADFIGSDADT 157 + SGV++ K +LTN HV++ L +G + Sbjct: 103 IASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 160 Query: 158 DIALIRIKAD--------NLTDIKLADSNALRVGDFVVAIGNPFG---FTQTVTSGIVSA 206 D+A+++ + + ++++ +V + G P T + G ++ Sbjct: 161 DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITY 220 Query: 207 VGRSGIRGLGYQNFIQTDASINPGNSGGALVNLQGQLVGINTASFNPQGSMAGNIGLGLA 266 + +Q D S GNSG + N + +++GI+ + N + + Sbjct: 221 L---------KGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNE----FNGAVFIN 267 Query: 267 --IPSNLARNVVE 277 + + L +N+ + Sbjct: 268 ENVRNFLKQNIED 280
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.003 Identities = 19/145 (13%), Positives = 39/145 (26%) Query: 111 QKLVSTKDAAKHKLTATTDAAKQKLSSTSAAAKKKITDTKANTKRKLEIAKANAKAEAAA 170 +K T D A + S + + AE + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 171 LSAKTAAKSAARKTAVATVNARTAAKKAAAKSAAAKKSVAKTPAKPVAKKAPVAKQTATK 230 +KT K+ T N A + + A + + + + Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 231 QAAVKKAPLKKAVTKTALKKAAKVT 255 +KA ++ T+ K ++V+ Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVS 1130
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.2 bits (94), Expect = 7e-06 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 21/85 (24%) Query: 1 MHLLITGGTGFIGQALCPALLQAGYQV----------SVLTRDVRRAQRTLPGVTAVET- 49 M L+TG GFIG + LL+AG+QV V + R PG + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 50 ----------LDGVRADAVINLAGE 64 + V Sbjct: 61 LADREGMTDLFASGHFERVFISPHR 85
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 3e-09 Identities = 24/171 (14%), Positives = 68/171 (39%), Gaps = 6/171 (3%) Query: 12 PPSRKPAISREDLIAATLSLIGPHRSLSTLSLREVAREAGIAPNSFYRQFRDMDELAVAL 71 ++ +R+ ++ L L + +S+ SL E+A+ AG+ + Y F+D +L + Sbjct: 4 KTKQEAQETRQHILDVALRLFS-QQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 72 IDLAGRSLRTIIGQARQRATSTDRSVIRVSVETFMEQLRADDK---LLHVLLREGAVGSD 128 +L+ ++ + + + + SV+R + +E +++ L+ ++ + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 129 AFKLAVERELSYFED-ELRVDLIRLAAADNAKLHAPALVSKAITRLVFAMG 178 + + E + ++ L A + +A + + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKM-LPADLMTRRAAIIMRGYIS 172
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 102 bits (255), Expect = 4e-30 Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 11/160 (6%) Query: 15 ACMSHHPELATVPSLDLNRYLGTWYEIARLPIHFEDADCTDVSAHYTLEGDGSVRVQNRC 74 C+ + V +LN YLG WYE+ARL FE + V+A Y + DG + V NR Sbjct: 15 GCLGMPESVKPVSDFELNNYLGKWYEVARLDHSFERG-LSQVTAEYRVRNDGGISVLNRG 73 Query: 75 LTAE-GELEEAIGQARAIDD-THSRLEVTFLPEGLRWIPFTKEHYWVMRID-PDYTAALV 131 + E GE +EA G+A ++ T L+V+F PF Y V +D +Y+ A V Sbjct: 74 YSEEKGEWKEAEGKAYFVNGSTDGYLKVSFFG------PFYGS-YVVFELDRENYSYAFV 126 Query: 132 GSPDRKYLWLLARLPQLDENVAQAYLAHAREQGFDLAPLI 171 P+ +YLWLL+R P ++ + ++ ++E+GFD LI Sbjct: 127 SGPNTEYLWLLSRTPTVERGILDKFIEMSKERGFDTNRLI 166
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.001 Identities = 41/242 (16%), Positives = 65/242 (26%), Gaps = 49/242 (20%) Query: 127 LAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTLLEVCATLDGSQKAPAAELVVQALGAR 186 L + R + L A+ ++A + D ++ + R Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 187 ALPDMADVRGQP----------HARRALEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLP 236 D + R L L++ G G GK L+A L Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGK 185 Query: 237 EASEA-EALETAAITSTSGRGLDLARWRQRPYRAPHHTASAVALVG-------GGTLPRP 288 + A+ AAI L G G Sbjct: 186 RRNGPFVAINMAAIPRD---------------------LIESELFGHEKGAFTGAQTRST 224 Query: 289 GEISLAHNGVLFLDEL----PEWQRQTLEVLREPLESGLVTISRAARSVDFPARFQLVAA 344 G A G LFLDE+ + Q + L VL++ + + ++VAA Sbjct: 225 GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG------EYTTVGGRTPIRSDVRIVAA 278 Query: 345 MN 346 N Sbjct: 279 TN 280
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 470 bits (1211), Expect = e-170 Identities = 168/333 (50%), Positives = 212/333 (63%), Gaps = 15/333 (4%) Query: 1 MTILVTGAAGFIGAYTCRALAARGEAVVGLDNYNRYYDPQLKHDRVAALC-PGVDIRTLD 59 M LVTGAAGFIG + + L G VVG+DN N YYD LK R+ L PG +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 60 LTDRDGLAALFDEIQPTRAVHLAAQAGVRYSLENPSAYVDSNLVGFVNMLELCRHRGVQH 119 L DR+G+ LF R + VRYSLENP AY DSNL GF+N+LE CRH +QH Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 120 LVYASSSSVYGDSATPPFSEDQRVDQPRSLYAATKAANELMGYTYAQLYGLRATGLRFFT 179 L+YASSSSVYG + PFS D VD P SLYAATK ANELM +TY+ LYGL ATGLRFFT Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 180 VYGPWGRPDMAPLIFSRAVLAGRPIEVFNHGKMQRDFTFVDDIVAGVLGALD-------- 231 VYGPWGRPDMA F++A+L G+ I+V+N+GKM+RDFT++DDI ++ D Sbjct: 181 VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQ 240 Query: 232 ------TPSSEPVPHRVFNLGNHTPVELEYFIDVIAQAAGRPAEKVYRPMQPGDMIRTMA 285 TP++ P+RV+N+GN +PVEL +I + A G A+K P+QPGD++ T A Sbjct: 241 WTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSA 300 Query: 286 DTRRAQAAFGFDPATPVERGLPQVVNWCRQYFG 318 DT+ GF P T V+ G+ VNW R ++ Sbjct: 301 DTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 388 bits (999), Expect = e-137 Identities = 155/357 (43%), Positives = 208/357 (58%), Gaps = 6/357 (1%) Query: 2 RPAQASIDLEALRHNYRLAKRLGG-SKALAVVKADAYGHGAVRCAQALEPEADGFAVACI 60 RP QAS+DL+AL+ N + ++ ++ +VVKA+AYGHG R A+ DGFA+ + Sbjct: 3 RPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIG-ATDGFALLNL 61 Query: 61 EEALELRQAGIRAPILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAAFQSPRPLRVW 120 EEA+ LR+ G + PIL+LEGFF +L + +H L T + Q++AL + PL ++ Sbjct: 62 EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIY 121 Query: 121 LKMDSGMHRLGLSPEDFRAAWLRLRGLPQIASLVLMTHLARADELDCSRTDEQAVAFALT 180 LK++SGM+RLG P+ W +LR + + + LM+H A A+ D Sbjct: 122 LKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPD--GISGAMARIEQA 179 Query: 181 AGGMRAETSLRNSPGLLGWPALRNDWSRPGLMLYGANPFPQ-DTENTAQLRPVMTLRSRI 239 A G+ SL NS L P DW RPG++LYGA+P Q LRPVMTL S I Sbjct: 180 AEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEI 239 Query: 240 ISVRDLPVGEPVGYGARFVAERPTRVGVVAMGYADGYPQFAPNGTPVLVDGQVCPLIGRV 299 I V+ L GE VGYG R+ A R+G+VA GYADGYP+ AP GTPVLVDG +G V Sbjct: 240 IGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTV 299 Query: 300 SMDMLTVDLTDHPQADIGATVQLWGQAPRVGPLATQCNISAYQLLCGL-KRVPRTYV 355 SMDML VDLT PQA IG V+LWG+ ++ +A Y+L+C L RVP V Sbjct: 300 SMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVTV 356
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 1e-14 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 506 RLLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGHARFDLMLTDIGMPGMD 565 +L +D + L + L G +V +A I DL++TD+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA---AGDGDLVVTDVVMPDEN 61 Query: 566 GYGLIRTVRENLGLDATALPAVAVTALAREDDRKRALESGFQEHLAKPYSVAQLVTAVRA 625 + L+ +++ LP + ++A +A E G ++L KP+ + +L+ + Sbjct: 62 AFDLLPRIKK----ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 626 A 626 A Sbjct: 118 A 118
>INTIMIN#Intimin signature. Length = 939 Score = 28.9 bits (64), Expect = 0.045 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 305 GDPLVEFNSSEDIRLTVVARLNKSLSYPAVGFMLKDRKGQYIL 347 G+ + + + S+DI L+ + LNK L Y + M+K GQ I+ Sbjct: 70 GETVADLSKSQDINLSTIWSLNKHL-YSSESEMMKAEPGQQII 111
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 36.8 bits (85), Expect = 5e-05 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 158 LAILPVVLF----MMGLAWLLSALGVFLRDTAQITAIITTAIMFLTPIFYPIDAIPPTFR 213 L LPV+ L +++AL ++ T I+FL+ +P+D +P F+ Sbjct: 148 LYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQ 207 Query: 214 PILNINPLAPVIAQIRNVLIWGHG--LKPLEYSLCLVISALVFIA 256 PL+ I IR +++ + +LC+ I F++ Sbjct: 208 TAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLS 252
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 191 bits (486), Expect = 2e-60 Identities = 88/346 (25%), Positives = 135/346 (39%), Gaps = 42/346 (12%) Query: 5 LVTGGAGFIGGNFVLEAVARGIRVVNLDALT--YAGNLNTL-ASLEGNPDHVFVKGDIGD 61 LVTG AGFIG + + G +VV +D L Y +L L P F K D+ D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 62 GMLVARLLQEHQPDAVLNFAAESHVDRSIEGPGAFIHTNVVGTLALLEAVRDYWKSLPTA 121 + L + V V S+E P A+ +N+ G L +LE R Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN------- 116 Query: 122 RSDAFRFLHVSTDEVYGTLGETGKFTETTPYA-PNSPYSASKAASDHLVRAFHHTYGLPV 180 L+ S+ VYG L F+ P S Y+A+K A++ + + H YGLP Sbjct: 117 --KIQHLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 181 LTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVL-- 238 YGP+ P+ + L G+ + VY GK RD+ ++ D EAI + Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 239 ----------------AKGKVGETYNVGGNSERQNIEVVQAICALLDQHRPRDDGKPRAS 282 A YN+G +S + ++ +QA+ L + Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG----------IEA 283 Query: 283 QITYVTDRPGHDRRYAIDASKLKNELGWEPSYTFEQGIAQTVQWYL 328 + + +PG + D L +G+ P T + G+ V WY Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYR 329
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.9 bits (96), Expect = 4e-06 Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 17/159 (10%) Query: 1 MTTLVFGANGQVGTELLRALAVDG----AVQATT----------RSGQLP-DGSACETAD 45 M LV GA G +G + + L G + R L G D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 46 FDAPETLTALLDRIKPSRVVNAAAYTAVDRAEQDRERATRANATAPGVIAAWCASNRVP- 104 E +T L RV + AV + ++ +N T I C N++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 105 LVHYSTDYVFDGQGTAPYREDAQTS-PLGVYGETKLAGE 142 L++ S+ V+ P+ D P+ +Y TK A E Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE 159
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.5 bits (73), Expect = 0.002 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 5/131 (3%) Query: 15 IVAGLALLLFGLWAAKYSSDRTWQQYRVVFREAVTGLSVGSPVQYNGIAVGSIT-----E 69 + G A L + A+ D+T R L + V N +A S T Sbjct: 299 MAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMR 358 Query: 70 LTLAPNDPRQVVAHVRVNSTTPIKSDTRAKLAITSLTGPSIIQLSGGTPEAPALTTIDKS 129 LT ++ V + + K+ A + TG + + T EAP L Sbjct: 359 LTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTP 418 Query: 130 DAPIIQTTPSA 140 +P PS+ Sbjct: 419 ASPPGNQNPSS 429
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 1e-05 Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 67 DEAHVLNVCIAPEAQSQGHGRVLLRALIKGACDRGARRAFLEVRPSNPSAIALYHSEGF 125 A + ++ +A + + +G G LL I+ A + LE + N SA Y F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>PF05043#Transcriptional activator Length = 493 Score = 34.9 bits (80), Expect = 7e-04 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCVPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F CV D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAH 139 + L+ H NTAH Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 32.2 bits (72), Expect = 0.017 Identities = 46/187 (24%), Positives = 71/187 (37%), Gaps = 27/187 (14%) Query: 634 PKMHRDAVHPAAPQWPVLQTASLDLQQAGLRVLA--HPTVASKSFLVTIGDRSVGGLTAR 691 P + +P P PV L+ G+ +A A+K V +G S+ Sbjct: 45 PALG--LEYPVRP--PVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIA-TGVN 99 Query: 692 EQMIGPWQLPLADCAITMAGFDTFEGEAMSIGERTPLALLNAAASARMAVGEAITNLCAA 751 IGP L D A+T T + + ++IG R + + +AVG Sbjct: 100 SVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARA------STSDTGVAVG--------- 144 Query: 752 PVQRLDSIKLSANWMAAAGHAGEDALLYDAVRAVGMELCPALELSVPVGKDSLSMQAQWV 811 +S K A A GH+ A + A+G E SV +G +SL+ Q + Sbjct: 145 ----FNS-KADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHL 199 Query: 812 EAGIGDS 818 AG D+ Sbjct: 200 AAGTKDT 206
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 61.5 bits (148), Expect = 2e-11 Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 14/225 (6%) Query: 957 AMGVDSVARRDSDTAIGTESVADGGYSTALGANAQASYDSSTALGANAMAEDYYSVALGT 1016 A+G++ R A G + A G +S A+GA A+A+ ++ A+GA ++A SVA+G Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP 105 Query: 1017 YALATGTSAISLGGQSYA------------PGTESVALGWQSNASGTRSIGLGSGAVASA 1064 + A G SA++ G S A VA+G+ S A S+ +G + +A Sbjct: 106 LSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAA 165 Query: 1065 DN--SVALGAGSIADRANAVSVGAADNARQIANVAAGTEGTDAVNLNQLNAVAETAQTTG 1122 ++ S+A+G S DR N+VS+G RQ+ ++AAGT+ TDAVN+ QL E Q Sbjct: 166 NHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENT 225 Query: 1123 KYFKASGSPDNDAGAYVEGENALAAGEGANAAGTGTTALGAGAQA 1167 A + +A A + + L + + T A +A Sbjct: 226 NKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEA 270 Score = 53.0 bits (126), Expect = 8e-09 Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 22/201 (10%) Query: 72 GRGASAPASKATAIGANSHASATGAVATGADSSASGVNSSAIGRQTNAIGENALAIGYNS 131 G ASA + AIGA + A+ AVA GA S A+GVNS AIG + A+G++A+ G S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 132 FVRQSG----------ENGVALGANAGVSGANSVALGAGSRTYEDDVVSIGSGNGRGG-- 179 ++ G + GVA+G N+ NSVA+G S + SI G+ Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 180 ---------PATRRITNVTAGVNATDAVNVAQL-RDVADVAENTAQFFKASPAEDSVGAY 229 R++T++ AG TDAVNVAQL +++ ENT + A + A Sbjct: 182 ENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYAD 241 Query: 230 VEGDSALAAGEGANAVGTATT 250 + S L +A T Sbjct: 242 NKSSSVLGIANNYTDSKSAET 262 Score = 51.1 bits (121), Expect = 4e-08 Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 5/168 (2%) Query: 1775 SITPAATSTAVGTAAVANHVTGTAIGGSAYAHGPNDTAIGSNARVNADGSTAVGANTQIA 1834 SI AT+ A AAVA A G ++ A GP A+G +A STA I Sbjct: 72 SIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIG 131 Query: 1835 AVATNA---VAMGEGAQVTAASGTAIGQGARATAQG--AVALGQGSVADRANTVSLGSVG 1889 A A+ + VA+G ++ A + AIG + A ++A+G S DR N+VS+G Sbjct: 132 ARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHES 191 Query: 1890 GERQVANVAAGTRATDAVNKGQLDNGVAAANSYTDSRYNAMADSFESY 1937 RQ+ ++AAGT+ TDAVN QL + T+ R + + +Y Sbjct: 192 LNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAY 239 Score = 49.1 bits (116), Expect = 1e-07 Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 26/165 (15%) Query: 371 GTQTRASGISSTAVGGPVVLIPGLGLFVQTQASGEASTALGAGAIASGAYATAVGTLSEA 430 G A GI S A+G +A+ A+ A+GAG+IA+G + A+G LS+A Sbjct: 62 GLNASAKGIHSIAIGA------------TAEAAKGAAVAVGAGSIATGVNSVAIGPLSKA 109 Query: 431 SGTEATAVGYFAYAPGEG------------ATAVGPESSAIGELSTALGYFS--TARGAN 476 G A G + A +G AVG S A + S A+G+ S A Sbjct: 110 LGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGY 169 Query: 477 SVALGANSVATRANTVSVGAAGTERQITNVAAATDGTDAVNLDQL 521 S+A+G S R N+VS+G RQ+T++AA T TDAVN+ QL Sbjct: 170 SIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 49.1 bits (116), Expect = 1e-07 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 3/144 (2%) Query: 834 GANAAAADTGSIAVGTYANAYGPRAISLGGQSRATGDESIALGWEAQAESDQSIALGASS 893 G NA+A SIA+G A A A+++G S ATG S+A+G ++A D ++ GA+S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 894 QAAAFSTAIGGYARASGAGATAVGNNSSAVDDRATALGSDS--MASGYFSTAVGSSSVAS 951 A AIG A S G AVG NS A + A+G S A+ +S A+G S Sbjct: 122 TAQKDGVAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTD 180 Query: 952 GRGATAMGVDSVARRDSDTAIGTE 975 + ++G +S+ R+ + A GT+ Sbjct: 181 RENSVSIGHESLNRQLTHLAAGTK 204 Score = 47.6 bits (112), Expect = 4e-07 Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 23/250 (9%) Query: 1322 GLIPARASGTGAAAFGAGAWATADYTTAIGRDSYADSVNATALGQSAAALADNTLALGGG 1381 G + A A G + A GA A A A+G S A VN+ A+G + AL D+ + G Sbjct: 61 GGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAA 120 Query: 1382 SRANAVGASVIGVNASATGINSTGVGRQVNVIGENAVSVGYNSFVRQSAVNGVALGANAG 1441 S A G + IG AS + + V+VG+NS + ++ Sbjct: 121 STAQKDGVA-IGARASTS---------------DTGVAVGFNSKADAKNSVAIGHSSHVA 164 Query: 1442 ATGADSVALGSGSRTYEADTVSIGSGNGRGGPATRRIVNVSDGQAATDAVNKGQLDAVSA 1501 A S+A+G S+T ++VSIG + R++ +++ G TDAVN QL Sbjct: 165 ANHGYSIAIGDRSKTDRENSVSIGHES-----LNRQLTHLAAGTKDTDAVNVAQLKKEIE 219 Query: 1502 DVQKTASKFKATGDAVATATGDRSTAAGSGAAA--TGARSVAIASGSRALATGASAMGVD 1559 Q+ +K A A A A D +++ G A T ++S +R A S ++ Sbjct: 220 KTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVLN 279 Query: 1560 SSASGVNSTA 1569 + + NS A Sbjct: 280 MAKAHSNSVA 289 Score = 44.9 bits (105), Expect = 3e-06 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 4/132 (3%) Query: 764 GADSNASGYFSTAVGGTSIANGRGATAIGYESIGNGTASTALGFAGVAWGDGGTAIGTES 823 G +++A G S A+G T+ A A A+G SI G S A+G A GD G S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 824 LAYGDNSTAVGANAAAADTGSIAVGTYANAYGPRAISLGGQSRATGDE--SIALGWEAQA 881 A D A+GA A+ +DTG +AVG + A ++++G S + SIA+G ++ Sbjct: 122 TAQKD-GVAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKT 179 Query: 882 ESDQSIALGASS 893 + + S+++G S Sbjct: 180 DRENSVSIGHES 191 Score = 42.6 bits (99), Expect = 1e-05 Identities = 40/148 (27%), Positives = 71/148 (47%) Query: 1131 PDNDAGAYVEGENALAAGEGANAAGTGTTALGAGAQAVVDNATAVGVGALASGIGAAALG 1190 P V A G A+A G + A+GA A+A A AVG G++A+G+ + A+G Sbjct: 45 PALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIG 104 Query: 1191 NTAQALGENSSAVGSNAVASDIGATANGAGAQALSTYTTALGSKAVASDNQAIAAGFRST 1250 ++ALG+++ G+ + A G + + + SKA A ++ AI Sbjct: 105 PLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVA 164 Query: 1251 ASNIGSAAFGGYSESSGRLSSALGYSAV 1278 A++ S A G S++ S ++G+ ++ Sbjct: 165 ANHGYSIAIGDRSKTDRENSVSIGHESL 192 Score = 41.0 bits (95), Expect = 5e-05 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 552 AAGSNALADSDYSTALGSSSAASAQGATAVGSGANATTDNATAVGFNSTAIAQNTTALGG 611 A G NA A +S A+G+++ A+ A AVG+G+ AT N+ A+G S A+ + G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 612 KSSASGDGSTAVGGASQATASGATALGYESIANGADATALGVG---------SVAFGNTS 662 S+A DG GA +T+ A+G+ S A+ ++ A+G S+A G+ S Sbjct: 120 ASTAQKDGVAI--GARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRS 177 Query: 663 TAVGGASVAFGADSAAFGANAAAGGTAST 691 SV+ G +S A GT T Sbjct: 178 KTDRENSVSIGHESLNRQLTHLAAGTKDT 206 Score = 41.0 bits (95), Expect = 5e-05 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 1516 AVATATGDRSTAAGSGAAATGARSVAIASGSRALATGASAMGVDSSASGVNSTAMGRQTN 1575 A A A + A G+G+ ATG SVAI S+AL A G S+A R + Sbjct: 77 ATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARAST 136 Query: 1576 SIGENGVALGYNSFVRQSGSNAVALGAKAGASGADSVALGSGSRTYDANTVSVG 1629 S + GVA+G+NS S A+ + A+ S+A+G S+T N+VS+G Sbjct: 137 S--DTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIG 188 Score = 40.7 bits (94), Expect = 6e-05 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%) Query: 1527 AAGSGAAATGARSVAIASGSRALATGASAMGVDSSASGVNSTAMGRQTNSIGENGVALGY 1586 A G A+A G S+AI + + A A A+G S A+GVNS A+G + ++G++ V G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 1587 NSFVRQSGSNAVALGAKAGASGADSVALGSGSRTYDANTVSVG 1629 S ++ G VA+GA+A S VA+G S+ N+V++G Sbjct: 120 ASTAQKDG---VAIGARASTSDT-GVAVGFNSKADAKNSVAIG 158 Score = 37.6 bits (86), Expect = 5e-04 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 14/144 (9%) Query: 677 AAFGANAAAGGTASTAIGANSSAFGERTVALGGASNASGEDSIALGASSQASALGTTAVG 736 A G NA+A G S AIGA + A VA+G S A+G +S+A+G S+A G Sbjct: 59 GAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG 118 Query: 737 SNANA------------SIANATAVGFNSSAGDDYATALGADSN--ASGYFSTAVGGTSI 782 + + A + AVGFNS A + A+G S+ A+ +S A+G S Sbjct: 119 AASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSK 178 Query: 783 ANGRGATAIGYESIGNGTASTALG 806 + + +IG+ES+ A G Sbjct: 179 TDRENSVSIGHESLNRQLTHLAAG 202 Score = 36.0 bits (82), Expect = 0.001 Identities = 44/187 (23%), Positives = 76/187 (40%) Query: 557 ALADSDYSTALGSSSAASAQGATAVGSGANATTDNATAVGFNSTAIAQNTTALGGKSSAS 616 A AD ++ S A+G A G N++A ++ A+G + A+ Sbjct: 23 AFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAA 82 Query: 617 GDGSTAVGGASQATASGATALGYESIANGADATALGVGSVAFGNTSTAVGGASVAFGADS 676 + AVG S AT + A+G S A G A G S A + AS + + Sbjct: 83 KGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVA 142 Query: 677 AAFGANAAAGGTASTAIGANSSAFGERTVALGGASNASGEDSIALGASSQASALGTTAVG 736 F + A A + + ++ +A ++A+G S E+S+++G S L A G Sbjct: 143 VGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202 Query: 737 SNANASI 743 + ++ Sbjct: 203 TKDTDAV 209 Score = 35.3 bits (80), Expect = 0.002 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 4/160 (2%) Query: 1174 AVGVGALASGIGAAALGNTAQALGENSSAVGSNAVASDIGATANGAGAQALSTYTTALGS 1233 A+G+ A G A A G +S A+G+ A A+ A A GAG+ A + A+G Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP 105 Query: 1234 KAVASDNQAIAAGFRSTASNIGSAAFGGYSESSGRLSSALGYSAVASSDYSTAVGAVA-- 1291 + A + A+ G STA G A G S+ A+G+++ A + S A+G + Sbjct: 106 LSKALGDSAVTYGAASTAQKDGVAI--GARASTSDTGVAVGFNSKADAKNSVAIGHSSHV 163 Query: 1292 LASGASAVAVGQFSKATGDESVAVGGSAFFGLIPARASGT 1331 A+ ++A+G SK + SV++G + + A+GT Sbjct: 164 AANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGT 203 Score = 33.3 bits (75), Expect = 0.010 Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 10/167 (5%) Query: 393 GLGLFVQTQASGEASTALGAGAIASGAYATAVGTLSEASGTEATAVGYFAYAPGEGATAV 452 G+ Q S A ALG A G + A G + A+G A A A AV Sbjct: 30 GIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAV 89 Query: 453 GPESSAIGELSTALGYFSTARGANSVALGANSVATRANTVSVGAAGTERQITNVAAATDG 512 G S A G S A+G S A G ++V GA S A + + V++GA A+ +D Sbjct: 90 GAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQK-DGVAIGAR---------ASTSDT 139 Query: 513 TDAVNLDQLTAVSDVASTTARSFVASGDGVAIAQGVDSVAAGSNALA 559 AV + + + S VA+ G +IA G S N+++ Sbjct: 140 GVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVS 186 Score = 32.2 bits (72), Expect = 0.027 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 8/113 (7%) Query: 237 AAGEGANAVGTATTALGTGANAVAENATAVGADALASGQDSAAFGHNAQANGPASVAVGG 296 A G A+A G + A+G A A A AVGA ++A+G +S A GP S A+G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAI-------GPLSKALGD 112 Query: 297 AAVNEDGEPLITNGGVPVTTGATSAGVGATAVGASAKADGFAASSFGVGAYAA 349 +AV GV + A+++ G AVG ++KAD + + G ++ A Sbjct: 113 SAVTYGAASTAQKDGVAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVA 164
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 199 bits (508), Expect = 8e-61 Identities = 100/359 (27%), Positives = 147/359 (40%), Gaps = 69/359 (19%) Query: 156 PQLVPNDPLYAQYQWHLSNRNGGINAPGAWDLSQGAGVVVAVLDTGILPSHPDFAGNILQ 215 Q++ + + + I AP W+ ++G GV VAVLDTG HPD I+ Sbjct: 10 YQVIKQEQQVNEIPRGV----EMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDLKARIIG 65 Query: 216 GYDFITDAEVSRRPTDARVPGALDYGDWQEADNVCYVGSTAQASTWHGTHVSSTVAEATN 275 G +F D E HGTHV+ T+A AT Sbjct: 66 GRNFTDDDEGDPEIFKD--------------------------YNGHGTHVAGTIA-ATE 98 Query: 276 NGVGMAGVAPKATILPVRVVGRCG-GYTSDIVDAIVWASGGTVEGVPANTNPAEVINISL 334 N G+ GVAP+A +L ++V+ + G G I+ I +A ++I++SL Sbjct: 99 NENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYA----------IEQKVDIISMSL 148 Query: 335 GGGGPCDSATQLAINGAVSRGTTVVVAAGNGGGDAAN----HSPAGCNNTITVGATRITG 390 GG A+ AV+ V+ AAGN G P N I+VGA Sbjct: 149 GGPEDVP-ELHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDR 207 Query: 391 GITYYSNYGSKVDLSGPGGGGSVDGNPGGYIWQAGYTGATTPTSGRYAYMGLGGTSMASP 450 + +SN ++VDL PG I +T G+YA GTSMA+P Sbjct: 208 HASEFSNSNNEVDLVAPGED----------IL-------STVPGGKYATFS--GTSMATP 248 Query: 451 HVAGVVALVQSAAIGLGKGPLTPAAVKALLKKTSRRFPVTPPASTPIGSGIVDAKAALK 509 HVAG +AL++ A + LT + A L K + +P G+G++ A + Sbjct: 249 HVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKME---GNGLLYLTAVEE 304
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 433 bits (1114), Expect = e-153 Identities = 134/411 (32%), Positives = 212/411 (51%), Gaps = 12/411 (2%) Query: 1 MPLYRYKALDAHGEMLDGQMEAASDAEVALRLQEQGHLPV---ETRLATGENDSPSLRML 57 M Y Y+ALDA G+ G EA S + L+E+G +P+ E R ++ S L L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLS-L 59 Query: 58 LRKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAP 117 RK + L T+QLATL+ A PL+ AL + E +++ VR V G Sbjct: 60 RRKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 118 LSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPAIL 177 L+ A++ G F +LY MV AGE G + L RLADY E+ + +R ++ A+IYP +L Sbjct: 120 LADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVL 179 Query: 178 LAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDW--WLVLIVVPGVL 235 V + LL VVP+ + + + ALP T+ ++ + VR + W++L ++ G + Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM 239 Query: 236 G--LWLDRKRRNAAFRASLDEWLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIG 293 + L +++R +F LL ++G + L TAR RTL L + VPLL A+ Sbjct: 240 AFRVMLRQEKRRVSF----HRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMR 295 Query: 294 IARNVMSNLALVEDVANAADDVKNGHGLSMSLARGKRFPRLALQMIQVGEESGALDTMLL 353 I+ +VMSN ++ A D V+ G L +L + FP + MI GE SG LD+ML Sbjct: 296 ISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLE 355 Query: 354 KTADTFELETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDLTNAI 404 + AD + E + + AL P + + +A+VV +++++L P+ L + Sbjct: 356 RAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 136 bits (343), Expect = 3e-44 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 18/132 (13%) Query: 15 QAGMSLLEIIIVIVLIGAVLTLVGSRVLGGADRGKANLAKSQIQTLAGKIENFQLDTGKL 74 Q G +LLEI++VIV+IG + +LV ++G ++ A S I L ++ ++LD Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66 Query: 75 PSKLDDLVTQPGDSSGWLGPYAKPAELN------------DPWGHAIEYRVPGDGQPFDL 122 P+ T G S P P N DPWG+ PG+ +DL Sbjct: 67 PT------TNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDL 120 Query: 123 MSLGKDGKPGGS 134 +S G DG+ G Sbjct: 121 LSAGPDGEMGTE 132
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 30.3 bits (68), Expect = 0.002 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Query: 21 RTRGTSLLEMLLVIALIAMAGVLAAAALNGGIDGMRLRTAGKAIASQLRYTRTQAIATGT 80 R RG +LLEM+L++ L+ ++ + A D +T + A QLR+ + + + TG Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEA-QLRFVQQRGLQTGQ 60 Query: 81 PQRFLIDPQQRRWE 94 + P RW+ Sbjct: 61 FFGVSVHPD--RWQ 72
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 34.1 bits (78), Expect = 5e-05 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Query: 1 MKRQRGYTLIEVIVAFALLALALSL----LLGSLSGAARQVRAAD 41 +QRG+TL+E++V ++ + SL L+G+ A +Q +D Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSD 48
>PERTACTIN#Pertactin signature. Length = 922 Score = 33.9 bits (77), Expect = 6e-04 Identities = 19/52 (36%), Positives = 23/52 (44%) Query: 192 AVPPPQQQPQPQPQPQPQSVPPAQQPGGQAPPTVQPQRSDGAQEAPRPSDDQ 243 A PP +P PQP PQP PP Q P QP + AP+P + Sbjct: 565 AKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGR 616 Score = 31.2 bits (70), Expect = 0.004 Identities = 21/58 (36%), Positives = 22/58 (37%) Query: 160 NGHGGQPPTANAAARGAGTATAPVPSPDAAAVAVPPPQQQPQPQPQPQPQSVPPAQQP 217 NG+G A A P P P P P Q PQP PQ Q PA QP Sbjct: 555 NGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQP 612 Score = 30.1 bits (67), Expect = 0.011 Identities = 18/48 (37%), Positives = 20/48 (41%) Query: 200 PQPQPQPQPQSVPPAQQPGGQAPPTVQPQRSDGAQEAPRPSDDQMRAI 247 P+P PQP PQ P QP P PQ EAP P R + Sbjct: 571 PKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGREL 618 Score = 29.7 bits (66), Expect = 0.014 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 175 GAGTATAPVPSPDAAAVAVPPPQQQPQPQPQPQPQSVPPAQQPGGQAPPTVQPQRSDGAQ 234 GA AP P+P P P Q PQP PQP PP +QP AP + A Sbjct: 564 GAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQ-PPQRQPEAPAPQPPAGRELSAAA 622 Query: 235 EA 236 A Sbjct: 623 NA 624
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 260 bits (665), Expect = 1e-78 Identities = 124/535 (23%), Positives = 230/535 (42%), Gaps = 57/535 (10%) Query: 254 GMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANAVLVITPQPRYLDQ 313 + V P+ + A DL + + + +AG+ + E +N VL++T + + + Sbjct: 126 EVVTRVVPLTNVAA----RDLAPLLRQLN--DNAGVGSVVHYEPSN-VLLMTGRAAVIKR 178 Query: 314 IQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLAEVFGGHSSGG-------------DS 360 + ++R+D+AG + + L + A D+ + E+ S + Sbjct: 179 LLTIVERVDNAGDRS-VVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERT 237 Query: 361 NASLVPGSE------TSVLGGALGNRDSNMGGSSGMTGGSIGDSGDGSSSGSSFGGSSGS 414 NA LV G +++ +R G++ + + D + + Sbjct: 238 NAVLVSGEPNSRQRIIAMIKQL--DRQQATQGNTKVIYLKYAKASDLVEVLTGISSTM-- 293 Query: 415 SGGLGNGSLQLSPRSNGNGAVTLDVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKL 474 S + LD + + A +TN L+V + P + + VI +L Sbjct: 294 ----------QSEKQAAKPVAALD---KNIIIKAHGQTNALIVTAAPDVMNDLERVIAQL 340 Query: 475 DVMPMQVHIEAQVAEVNLTGQLSYGVNWYFENAVNAATDSNS--NGPGFKGGAGLPSAAG 532 D+ QV +EA +AEV L+ G+ W +NA ++ G G Sbjct: 341 DIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKD-G 399 Query: 533 RNIWGDIAGKVTGDGVAWSFLGKNAAAIITALDKVTDVRLLQTPSVFVRNNAEATLNVGS 592 + + +G+A F N A ++TAL T +L TPS+ +N EAT NVG Sbjct: 400 TVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQ 459 Query: 593 RIAINSTSINTGIGVDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSSPGDRPAA 652 + + + S T D+ +++V+ G+ LKV+P++ + V L+I QEVSS D Sbjct: 460 EVPVLTGSQTTS--GDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVAD---- 513 Query: 653 CTSATATVNAAACNVDINTRRVKTEAAVQSGDTIMLAGLIDDTTSDGSNGIPFLSKLPVV 712 A+ ++ NTR V V SG+T+++ GL+D + SD ++ +P L +PV+ Sbjct: 514 ----AASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVI 569 Query: 713 GALFGSKSRNSARREVIVLITPSIVHNPQEARNLTDEYGQKFKAMEPLKPSQKPQ 767 GALF S S+ ++R +++ I P+++ + E R + F + + ++ Sbjct: 570 GALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENN 624 Score = 191 bits (487), Expect = 5e-54 Identities = 73/292 (25%), Positives = 125/292 (42%), Gaps = 21/292 (7%) Query: 89 ASSGSATFNFEGESVQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEM 148 A++ + +F+G +Q + + + L + +I P V+GT+T+ + + ++ Q Sbjct: 25 AAAEEFSASFKGTDIQEFINTVSKN-LNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLS 83 Query: 149 VLG-WNNARMVFSGGRYNIVPA-DQALAGTVAPSTASPSAARGFEVRVVPLKFISASEMK 206 VL + A + + G +V + D A S A+P RVVPL ++A ++ Sbjct: 84 VLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLA 143 Query: 207 KVLEPYARPNAIVGTD---PARNVITLGGTRAELENYLRTVQIFDVDWLSGMSVGVFPIQ 263 +L NA VG+ NV+ + G A ++ L V+ VD SV P+ Sbjct: 144 PLLRQL-NDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVE--RVDNAGDRSVVTVPLS 200 Query: 264 SGKAEKVSADLEKVFGEQSKT--PSAGMFRFMPLENANAVLVI---TPQPRYLDQIQQWL 318 A V + ++ + SK+ P + + + E NAVLV + R + I+Q L Sbjct: 201 WASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQ-L 259 Query: 319 DRIDSAGGGVRLFSYELKYIKAKDLADRLAEVFGGHSSGGDSNASLVPGSET 370 DR + G ++ LKY KA DL + L + SS S Sbjct: 260 DRQQATQGNTKVIY--LKYAKASDLVEVLTGI----SSTMQSEKQAAKPVAA 305 Score = 39.9 bits (93), Expect = 3e-05 Identities = 35/236 (14%), Positives = 81/236 (34%), Gaps = 21/236 (8%) Query: 187 ARGFEVRVVPLKFISASEMKKVLEPYAR---PNAIVGT-------DPARNVITLGGTRAE 236 A V VPL + SA+++ K++ + +A+ G+ D N + + G Sbjct: 189 AGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNS 248 Query: 237 LENYLRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGM------- 289 + + ++ D + + V ++ KA + L + A Sbjct: 249 RQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDK 308 Query: 290 -FRFMPLENANAVLVITPQPRYLDQIQQWLDRIDSAGGGVRLFS--YELKYIKAKDLADR 346 NA L++T P ++ +++ + ++D V + + E++ +L + Sbjct: 309 NIIIKAHGQTNA-LIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQ 367 Query: 347 LAEVFGGHSSGGDSNASLVPGSETSVLGGALGNRDSNMGGSSGMTGGSIGDSGDGS 402 A G + +S + + G S++ + G G+ Sbjct: 368 WANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGN 423
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 71.6 bits (175), Expect = 1e-17 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 7/172 (4%) Query: 15 GPGRPKDLGKRAAILGAARAMFMELGYAGVSMDGIAARAGVSKLTVYSHFGDKESLFSEA 74 + + R IL A +F + G + S+ IA AGV++ +Y HF DK LFSE Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 75 IRAQCQHM--MPDDLFDHAPKGALRDQLTEIAHAFFVMVSTESAISTHRMMM---APGTG 129 ++ + + P G L EI TE ++ G Sbjct: 63 WELSESNIGELELEYQAKFP-GDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 130 DVHIREMFWDAGPKRTQRALADFLSARVADGQLEIP-DVARAASQFFCLLKG 180 ++ + + + + L + L RAA + G Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG 173
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 27.7 bits (61), Expect = 0.040 Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 85 GLTQISTLQGVAERLPFEAGSMDAVVSRYSAHHWSDLGQALREVRR 130 GL + + L E + RYSA ++L + +R+ R Sbjct: 98 GLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGR 143
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.9 bits (67), Expect = 0.032 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 492 HLGLPNRQDVRDGIMAYK-IAAHAADLAKGHPGAQVRDNALSKARFEFRWDDQ 543 HL L N QD+R GI+ I+ + L K G+Q + L+KA+ +W Q Sbjct: 516 HLALGNGQDLRTGILTVDEISNQSTTLNKLLGGSQCQ--PLNKAQEVQKWLSQ 566
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.021 Identities = 16/87 (18%), Positives = 34/87 (39%) Query: 79 FANRTLWPLLHFRLDLVDYDRATREGYMRVNRLFAEKLAPLLKDSDTLWIHDYHMIPLGA 138 + L + + D + ++ R + E+ + +D D + + Sbjct: 91 HVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAY 150 Query: 139 MLRELGVGCKMGFFLHVPMPSADLVQA 165 L E+ K+GF+L++P DLV + Sbjct: 151 ALSEIKSAFKIGFYLYLPFVVVDLVVS 177
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.2 bits (86), Expect = 1e-05 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 99 KDYQNSGWGSRLFETALQWLERDGPRTLWIGVWSENFGAQRLYARYGFEKVGKYD 153 KDY+ G G+ L A++W + + L + N A YA++ F +G D Sbjct: 99 KDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF-IIGAVD 152
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 28.8 bits (64), Expect = 0.031 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 17/80 (21%) Query: 8 SSSIREDDAADASIRPKRLADYLGQQPVRE----QMEIYIQAAKAR-----------GEA 52 + S + A A +AD L Q E Q E +I++ K R Sbjct: 123 NFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTL 182 Query: 53 MD--HVLIFGPPGLGKTTLS 70 +D H+L+FGP L + L Sbjct: 183 IDPRHMLVFGPNSLFQEILD 202
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 54.7 bits (131), Expect = 3e-10 Identities = 37/220 (16%), Positives = 65/220 (29%), Gaps = 17/220 (7%) Query: 39 LWSPE-----RSVEPAAGDPSMEASLDVSAADARVARQALKATPVETPPPAPLPEPAPE- 92 L++PE ++V+ DV + + A PP P E Sbjct: 980 LYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 93 --DSVPPPQPIPEPRPQDA--PTPQQAQAQERVAQPDKVDQDRVDALAISAEKAKQEQEA 148 ++ E QDA T Q + K + V A + E A+ E Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREV-------AKEAKSNVKANTQTNEVAQSGSET 1092 Query: 149 KRRQEQIDLTERKRQEEAEQKLRLAKQQEEADAKKKQAAAQQAAEDAERQKKIDDIRRQR 208 K Q ++E + K+ K QE + + Q+ +E + Q + Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 209 AQADKDMALAEQKLRQVAAARAQQSSAATATSAQPTAGQG 248 + + A+ S+ + T G Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Score = 51.6 bits (123), Expect = 3e-09 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 39/224 (17%) Query: 59 LDVSAADARVARQALKATPVETPPPAPLPEPAPE---DSVPPPQPIPEPRPQDAPTPQQA 115 L+VS V A K L P E +V TP Sbjct: 953 LNVSLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNI---------TTPNNI 1003 Query: 116 QAQERVAQPDKVDQDRVDALAIS--------------AEKAKQEQ-----------EAKR 150 QA + + RVD + AE +KQE E Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTA 1063 Query: 151 RQEQIDLTERKRQEEAEQKLRLAKQQEEADAKKKQAAAQQAAEDAERQKKIDDIRRQRAQ 210 + ++ + + Q +A+ E + + A + E + K++ + Q Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVP 1123 Query: 211 ADKDMALAEQKLRQVA--AARAQQSSAATATSAQPTAGQGGTST 252 +Q+ + A + + T +P + T+ Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167 Score = 35.0 bits (80), Expect = 4e-04 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 11/203 (5%) Query: 47 EPAAGDPSMEASLDVSAAD-----ARVARQALKATPVETPPPAPLPEPAPEDSVPPPQPI 101 + + EA +V A A+ + + ET A + E + V + Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV-EKEEKAKVETEKTQ 1120 Query: 102 PEPRPQDAPTPQQAQAQERVAQPDKVDQDRVDALAISAEKAKQEQEAKRRQEQIDLTERK 161 P+ +P+Q Q++ Q + ++ + I +++ A Q + + Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEP-ARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 162 RQEEAEQKLRLAKQQEEADAKKKQAAAQQAAEDAERQKKIDD----IRRQRAQADKDMAL 217 Q E + + A Q ++E K + R + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239 Query: 218 AEQKLRQVAAARAQQSSAATATS 240 + VA ++ S Sbjct: 1240 SSNDRSTVALCDLTSTNTNAVLS 1262
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 106 bits (266), Expect = 3e-30 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 11/112 (9%) Query: 67 VYFDLDQDSLKPEFQAIMACHAKYLR--DRPSSRITLQGNADERGSREYNMGLGERRGNA 124 V F+ ++ +LKPE QA + L D + + G D GS YN GL ERR + Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 125 VSSSLQAAGGSASQLTVVSYGEERPVCTESNE---------SCWSQNRRVEI 167 V L + G A +++ GE PV + + C + +RRVEI Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 5e-04 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%) Query: 30 RVAVLEQQQANSQANNDL---LNQLQQARSDLQALRSTVEQLQHD--NEQLKQ--QSKDQ 82 + AVLEQ+ +A N+L +QL+Q S++ + + + + NE L + Q+ D Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 83 YLDLDGRLNRLEGAGGATPSLPPATGSV 110 L L + E A+ P + V Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKV 338
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.7 bits (103), Expect = 3e-08 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Query: 4 RVLLVEDESLVAMLLEDCLTELGYEVAATVADVDAALQAVHAGNLDLALPDVNLCGTLSF 63 +L+ +D++ + +L L+ GY+V ++ + + AG+ DL + DV + +F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDV-RITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 64 PIAEELDA--CGLPYIFVTGYA 83 + + LP + ++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQN 85
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 7e-16 Identities = 23/117 (19%), Positives = 48/117 (41%) Query: 1062 RLLLVEDDATVAQVIVGLLQTRGHHVTHVVHGLAALAEVSTRRFDAGLCDLDLPGLDGVA 1121 +L+ +DDA + V+ L G+ V + ++ D + D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1122 LVAQLRARGVRFPIVAVTARADADAEPQAMAAGCNGFLRKPVTGDLLAQALARVLTE 1178 L+ +++ P++ ++A+ +A G +L KP L + R L E Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 8e-16 Identities = 24/114 (21%), Positives = 49/114 (42%) Query: 1054 RILLVEDEPTVAEVISGLLINRGHRVVHAAHGLAALAEAVDGGFDVALLDLDLPCLDGFA 1113 IL+ +D+ + V++ L G+ V ++ G D+ + D+ +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1114 LASQLRQLGHRFPLLAVTARADSAAEAQALAAGFDGFLRKPVTADLLVEAIAAA 1167 L ++++ P+L ++A+ +A G +L KP L+ I A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 5e-16 Identities = 28/115 (24%), Positives = 51/115 (44%) Query: 1070 RILLVEDDPTIAEVIVGLLRAQGHSVVHAPHGLAALTEAADNTFDLALLDLDLPGLDGFA 1129 IL+ +DD I V+ L G+ V + A DL + D+ +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1130 LARQLRAFGYEMPLIAVTARSDEVAEPKAQDAGFDSFLRKPLTGDMLADTIAEAL 1184 L +++ ++P++ ++A++ + KA + G +L KP L I AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 6e-16 Identities = 28/115 (24%), Positives = 49/115 (42%) Query: 1056 RILLVEDDPTIAEVIVGLLRAQGHSVVHAPHGLAALTEAADNTFDLALLDLDLPGLDGFA 1115 IL+ +DD I V+ L G+ V + A DL + D+ +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1116 LARQLRVFGYEMPLIAVTARSDEAAEPNAHEAGFDSFLRKPLTGDMLADTIAEAL 1170 L +++ ++P++ ++A++ A E G +L KP L I AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 131 bits (330), Expect = 2e-35 Identities = 78/316 (24%), Positives = 123/316 (38%), Gaps = 46/316 (14%) Query: 70 LTNARAAQALGFTGAGYRIGVIDTGINANHPALQGRVSDSFIYVDPRINNTA-VGDVVGH 128 + A A G G ++ V+DTG +A+HP L+ R+ + D + D GH Sbjct: 28 MIQAPAVWNQT-RGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGH 86 Query: 129 GTVVAELAAGRAVGQWPGGIAPGAGLVSARIISDRAPVDDGTGNGNEIDGPLGLGPVHAD 188 GT VA A G+AP A L+ ++++ G+G + I + Sbjct: 87 GTHVAGTIAATENENGVVGVAPEADLLIIKVLNK-----QGSGQYDWIIQGI------YY 135 Query: 189 LISAGVRIMNNSWGGLYWNDPTVTNQIAQEYRPFILSNNGLVVFASGNESRSQPSDTAAL 248 I V I++ S GG + P + + + + LV+ A+GNE Sbjct: 136 AIEQKVDIISMSLGGPE-DVPELHEAVKKAVA-----SQILVMCAAGNEGDG-------- 181 Query: 249 PSQPGPNGTLPAADLERGWLVVGAVDTANPTQLASYSNACGVAMRYCLVAPGTSLFIDPD 308 + G + + VGA++ + +SN+ LVAPG + Sbjct: 182 DDRTDELGYPGCYN---EVISVGAINFDR--HASEFSNSNN---EVDLVAPGEDIL---- 229 Query: 309 ATAGNIRYFYGSGTSFAAPLVSGAAALVWQAFPY-FNNDL----VRQTLLGTATDLGAAG 363 +T +Y SGTS A P V+GA AL+ Q F DL + L+ LG Sbjct: 230 STVPGGKYATFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG--N 287 Query: 364 VDPVFGYGLLNVGKAV 379 + G GLL + Sbjct: 288 SPKMEGNGLLYLTAVE 303
>PF05043#Transcriptional activator Length = 493 Score = 35.3 bits (81), Expect = 5e-04 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 14/86 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCVPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F CV D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAHM 140 + L+ H NTAH+ Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAHL 325
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.034 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 47 EVPSPVDGVLKEIKFEAGSTVTSNQILAIIEEGAVAAAAPAEQKKAAAPAAAAPAAAPDA 106 E+ + ++KEI + G +V +L + A+ A A + +++ A Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLT--ALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 107 AAAPAPASKSAADSLPPGARFSAITQG 133 + +K LP F +++ Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEE 182
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 28.4 bits (63), Expect = 0.033 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 213 ATSKPFLWAVLFPLLACVMLSILSAMPGVSLPIGWIWYIVGYRGLL 258 AT +PF V P L+C L + + +PG +LP G + +I+ RG L Sbjct: 86 ATERPFELPV--PHLSCRRLCVENPVPGSALPEGKLLHIMSDRGGL 129
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 136 bits (344), Expect = 4e-41 Identities = 67/178 (37%), Positives = 107/178 (60%), Gaps = 8/178 (4%) Query: 127 EIDLSILMDAVRTVFAKGTTRLTQQEAMATMQAFAS---AKQGAAGAKNREE----GNAF 179 +I+ +L ++ + LT+++ + F AK+ A K EE G+AF Sbjct: 52 DINPDVLAKGMQDGMSGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAF 111 Query: 180 LAKNKTEKGVITTASGLQYMVLRQGSGERPMRTNKVRVNYEGKLLNGQVFDSSYQRGQPA 239 L+ NK++ G++ SGLQY ++ G+G +P +++ V V Y G L++G VFDS+ + G+PA Sbjct: 112 LSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPA 171 Query: 240 EFGLDQVIPGWTEGVALMPVGSKYRFWIPSNLAYGPNGTQG-IGPDATLTFDVELMGI 296 F + QVIPGWTE + LMP GS + ++P++LAYGP G IGP+ TL F + L+ + Sbjct: 172 TFQVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229 Score = 41.5 bits (97), Expect = 2e-06 Identities = 18/72 (25%), Positives = 43/72 (59%) Query: 15 ALNASSEKSTRDNVSYAIGMDVARSFEPIAQDIDVNAMQRAIENAFKGGKPLLSDEQTQA 74 A +A+S + +D +SY+IG D+ ++F+ DI+ + + + +++ G + +L++EQ + Sbjct: 21 ATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEEQMKD 80 Query: 75 TDTALRTALAAR 86 + + L A+ Sbjct: 81 VLSKFQKDLMAK 92
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 140 bits (354), Expect = 2e-43 Identities = 91/239 (38%), Positives = 132/239 (55%), Gaps = 16/239 (6%) Query: 1 MKLRSIAVAVAALALTGNALAQDTTS---EKGKLSYYFGYDYGNNLAELTGRGEQLDINS 57 MK++ + A+ LA++ A D TS +K KLSY G D G N +G ++ + Sbjct: 1 MKMKLVTAAIMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKN---QGIDINPDV 57 Query: 58 VVKGLQDAYAKKQPAITADQLKPAVEAFQKREQGRAQQAKAEYDKAAAANKTKSDAFLAK 117 + KG+QD + Q +T +Q+K + FQK + AE++K A NK K DAFL+ Sbjct: 58 LAKGMQDGMSGAQLILTEEQMKDVLSKFQKDLMAKRS---AEFNKKAEENKAKGDAFLSA 114 Query: 118 NKGTAGVQTLPSGVQYRVIEAGKGAKPTQASTVQLEVAGPFPFGDREKARPAQQIPA-IK 176 NK G+ LPSG+QY++I+AG GAKP ++ TV +E G G + PA + Sbjct: 115 NKSKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQ 174 Query: 177 VSEVEMQAMRDTLLQMPAGSKWEVTLPPEKAYGADPRT---PFPPNVAVQFEIKLVSVK 232 VS+V + + L MPAGS WEV +P + AYG PR+ P PN + F+I L+SVK Sbjct: 175 VSQV-IPGWTEALQLMPAGSTWEVFVPADLAYG--PRSVGGPIGPNETLIFKIHLISVK 230
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 26.9 bits (59), Expect = 0.043 Identities = 9/15 (60%), Positives = 11/15 (73%) Query: 116 GTDPCDPCSRMEDAL 130 G DPCDPC+ DA+ Sbjct: 44 GGDPCDPCTTWCDAI 58
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.4 bits (63), Expect = 0.010 Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 83 LAVGPGHQRQGLGTRLVQAALATLRERGAAG 113 +AV ++++G+GT L+ A+ +E G Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCG 125
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.4 bits (66), Expect = 0.006 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 134 PLKNIETDFPPVFDHFYRSLALRTCSQCGHLHPAPERYA 172 L + FP F+ Y ++ + GHL R A Sbjct: 119 SLADAMKCFPGSFERLYCAM-VAAGETSGHLDAVLNRLA 156
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 91.6 bits (227), Expect = 7e-26 Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 11/152 (7%) Query: 24 VRAVPQLDISRYAGQWHEIAHLPVSFQKKCRSDITASYTLRDDGLVGVRN-GCRIADGSL 82 V+ V +++ Y G+W+E+A L SF++ S +TA Y +R+DG + V N G G Sbjct: 23 VKPVSDFELNNYLGKWYEVARLDHSFERGL-SQVTAEYRVRNDGGISVLNRGYSEEKGEW 81 Query: 83 TQAEGVARPVEGQP-GQLQVRFAPEWLGWLPLVWADYWVIALD-PDYQWAVVGEPDRKYL 140 +AEG A V G G L+V F + G Y V LD +Y +A V P+ +YL Sbjct: 82 KEAEGKAYFVNGSTDGYLKVSFFGPFYG-------SYVVFELDRENYSYAFVSGPNTEYL 134 Query: 141 WILSRSPQMQRAQFERLKAQAAEMGYDLSPLI 172 W+LSR+P ++R ++ + E G+D + LI Sbjct: 135 WLLSRTPTVERGILDKFIEMSKERGFDTNRLI 166
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 1e-13 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 2/118 (1%) Query: 417 TILVVEDKQDVAVVARMFLENAGYRILSASSGREAVEVLEKNPAVDALFTDLIMPGGMNG 476 TILV +D + V L AGY + S+ + D + TD++MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMP-DENA 62 Query: 477 VMLAREARRMLPKIKILLTTGYADASIQRTDVGGAEFDVVNKPYTQKELLKRIRMLLD 534 L ++ P + +L+ + +D + KP+ EL+ I L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.7 bits (92), Expect = 4e-05 Identities = 38/221 (17%), Positives = 59/221 (26%), Gaps = 28/221 (12%) Query: 45 APSAAPPASPVEAMPHAEPRIDTAAAPAVAPGTPAAARTEAAAPAPVAATPP----AATP 100 + P + +P + A AP P A T + VA Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 101 ADQLAQEIAARTGQAQSIAAVPSTPATPAAPAPTALQALPDPTPASAPSTPVTVV----- 155 +Q A E A+ + A + A + T + TV Sbjct: 1054 NEQDATETTAQNREVAK-EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 156 ---------VPPVAGQ--PQTTPTPSDAAPAQPVTPSHSAAPTVLAPPVTAPPVVAPAVA 204 VP V Q P+ + + A+P + PTV + Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN---DPTVNIKEPQSQTNTTADTE 1169 Query: 205 APAPIVPSAAAAPVAAAPANAAPTVATPAIVNTPLPTTQDS 245 PA S PV + ++V P TT + Sbjct: 1170 QPAKETSSNVEQPV----TESTTVNTGNSVVENPENTTPAT 1206 Score = 31.2 bits (70), Expect = 0.014 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 14/80 (17%) Query: 157 PPVAGQPQTTPTPSDAAPA-----QPVTPSHSAAPTVLAPPVTAPPVVAPAVAAPAPIVP 211 P V + QT T + P P PS++ +A AP V PAP P Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEE---IARVDEAP------VPPPAPATP 1033 Query: 212 SAAAAPVAAAPANAAPTVAT 231 S VA + TV Sbjct: 1034 SETTETVAENSKQESKTVEK 1053
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 29.3 bits (65), Expect = 0.033 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 25/167 (14%) Query: 13 KQPESALRRWLKERSITEVECLVPDITGNARG--KIIPADKFSHDYGTRLPEGIFATTVT 70 K A+ RW++E P+ + A K + P V+ Sbjct: 290 KNTREAVDRWIQEN---------PNAAETVEAVFNVAAAAKVAKLAKAAKPG---KAAVS 337 Query: 71 GDFPDDYYALTSPSDSDMHLRPDASTVRMVPWATDPTAQVIHDCYTKDGDPHEL-APRNV 129 GDF D Y + SDS L +A + + + D +K + E+ A N Sbjct: 338 GDFADSYKKKLALSDSARQLYQNAKYREALDIHYEDLIRRKTDGSSKFINGREIDAVTN- 396 Query: 130 LRRVLDAYAQVK--LQPVVAPELEFFLVQKNTDPDFPLLPPAGRSGR 174 DA Q K + + P + FL QKN + A + G+ Sbjct: 397 -----DALIQAKRTISAIDKP--KNFLNQKNRKQIKATIEAANQQGK 436
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 96.4 bits (240), Expect = 6e-24 Identities = 51/371 (13%), Positives = 113/371 (30%), Gaps = 83/371 (22%) Query: 81 SVAVAPRVSGYVTKVLVSDNQIVEAGQPLLQIDDRTYQATLQQAEAAIAARQADIVAATA 140 S + P + V +++V + + V G LL++ +A + ++++ + + Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 141 NVSAQESALLQARTQVTAAAASLRFAQAEVKRFAPLAASGADTHEHQES-LQHDLARARA 199 + E L + ++ EV R L T ++Q+ + +L + RA Sbjct: 156 LSRSIELNKLPELK-LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214 Query: 200 QYDAAQAQAKAGESHIQASRAQLE------------------------QAQAGVKQATAD 235 + A+ E+ + +++L+ +A ++ + Sbjct: 215 ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQ 274 Query: 236 ADQARVAVEDTRLTSRIH------------------------------------------ 253 +Q + + ++ Sbjct: 275 LEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPV 334 Query: 254 -GRVGD-KTVQVGQFLGAGTRTMTIVPQQSLYLV-ANFKETQVGLMRPGQPVEIEVDALS 310 +V K G + M IVP+ V A + +G + GQ I+V+A Sbjct: 335 SVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFP 394 Query: 311 GVK---LHGKVESLSPGTGSQFALLPPENATGNFTKVVQRVPVRIRVLAGDEARKVLVPG 367 + L GKV++++ + G V+ + L G Sbjct: 395 YTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNIP--LSSG 445 Query: 368 MSVEVTVDTRS 378 M+V + T Sbjct: 446 MAVTAEIKTGM 456
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 101 bits (254), Expect = 3e-25 Identities = 82/407 (20%), Positives = 165/407 (40%), Gaps = 20/407 (4%) Query: 25 WLAVLAGTIGSFMATLDISIVNAALPTIQGEVGASGTEGTWISTAYLVAEIIMIPLTGWF 84 WL +L SF + L+ ++N +LP I + W++TA+++ I + G Sbjct: 18 WLCIL-----SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 85 VRTLGLRNFLLICAVMFTAFSVVCGLSTS-LSMMIIGRVGQGLAGGALIPTALTIVATRL 143 LG++ LL ++ SV+ + S S++I+ R QG A + +VA + Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI 132 Query: 144 PPSQQTMGTALFGMTVIMGPVIGPLLGGWLTENVSWHYAFFINVPICVGLVALLLLGLKH 203 P + L G V MG +GP +GG + + W Y + +P+ + L+ L Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSY--LLLIPMITIITVPFLMKLLK 190 Query: 204 EKGDWAGLLNADWLGIYGLTAGLGGLTVVLEEGQRERWFESSEINTLSLIALSGFIALVI 263 ++ G D GI ++ G+ + +L F +S + ++++ F+ V Sbjct: 191 KEVRIKGHF--DIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVK 238 Query: 264 SQFRRRPPVIRLSLLVQRSFGAVFIMVMAVGMILFGVMYMIPQFLAVISGYNTEQAGYVL 323 + P + L F + + + G + M+P + + +T + G V+ Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI 298 Query: 324 LLSGLPTVLLMPMMPKLLEMVDVRILVIAGLICFAAACFVNLTLTADTVGTHFVAGQLLQ 383 + G +V++ + +L + V+ + F + F+ + +T + Sbjct: 299 IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFV 358 Query: 384 GCGLALAMMSLNQAAISSVPPELAGDASGLFNAGRNLGGSVGLALIS 430 GL+ ++ SS+ + AG L N L G+A++ Sbjct: 359 LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVG 405
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 9e-06 Identities = 32/217 (14%), Positives = 58/217 (26%), Gaps = 12/217 (5%) Query: 73 TLTQLVTQALADSPNLRAAQARLRANRALAQRRRAERLPTLNASALYAYAEPPQTIVDTL 132 LT L +A QARL R R E L L Sbjct: 126 KLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELN-KLPELKLPDEPYFQNV----- 179 Query: 133 GGLQQQGQAGQPPAAGNQALDLEKTQIYSAGFDASWELDVFGRRRRAAEGALAQAQ---A 189 ++ + +K Q E R E + Sbjct: 180 -SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 190 SEAELADAQVQLAAEVGQVYLNYRGLQARLAIADANLDKIRQTLQLVQQRRGQGAASDLQ 249 + L Q V + Y L + + L++I + ++ + Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL-VTQLFK 297 Query: 250 VEQIATQVQQQQAQRLPLEMQSQEAQDQLALMVGRAP 286 +I +++Q L ++ + +++ V RAP Sbjct: 298 -NEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAP 333
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 277 bits (711), Expect = 7e-86 Identities = 139/574 (24%), Positives = 235/574 (40%), Gaps = 84/574 (14%) Query: 260 KAIRMVYSDVPGERVRTEDTPVE---LRSTFSISDEDVQELSKQAL---------VIEKH 307 KA + +V E+ D E L + S E+++ + Q + H Sbjct: 18 KAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAAH 77 Query: 308 YGRPMDIEWAKDGVSGKLFIVQARPETVKSRSHATQIERFSLEAKDAKILVEGRAVGAKI 367 D E + GK+ Q E + F E+ D + + E RA A I Sbjct: 78 LLVLDDPELVDG-IKGKIENEQMNAEYALKEVSDMFVSMF--ESMDNEYMKE-RA--ADI 131 Query: 368 GSGVARVVRSLDDMNRVQAGD-----VLIA-DMTDPDWEPVMK-RASAIVTNRGGRTCHA 420 RV+ L + V+IA D+T D + K T+ GGRT H+ Sbjct: 132 RDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHS 191 Query: 421 AIIARELGVPAVVGSGNATDVLSDGQEVTVSCAEG---------DTGFIYEGLLPFERTT 471 AI++R L +PAVVG+ T+ + G V V EG + E FE+ Sbjct: 192 AIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQK 251 Query: 472 TDLGNMPPAP--------LKIMMNVANPERAFDFGQLPNAGIGLARLEMIIAAHIGIHPN 523 + + P +++ N+ P+ GIGL R E + + Sbjct: 252 QEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDR-----D 306 Query: 524 ALLEYDKQDADVRKKIDAKIAGYGDPVSFYVNRLAEGIATLTASVAPNTVIVRLSDFKSN 583 L ++Q ++ + G PV ++R D + Sbjct: 307 QLPTEEEQFEAYKEVVQRM---DGKPV-----------------------VIRTLDIGGD 340 Query: 584 EYANLIGGSRYEPHEENPMIGFRGASRYVDPSFTKAFALECKAVLKVRNEMGLDNLWVMI 643 + + + P E NP +GFR ++ F + +A+L+ NL VM Sbjct: 341 KELSYL----QLPKELNPFLGFRAIRLCLE--KQDIFRTQLRALLRAS---TYGNLKVMF 391 Query: 644 PFVRTIEEGRKVIEVLEQNGLKQ-GDGADGKPGLKIIMMCELPSNALLADEFLDIFDGFS 702 P + T+EE R+ ++++ K +G D +++ +M E+PS A+ A+ F D FS Sbjct: 392 PMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFS 451 Query: 703 IGSNDLTQLTLGLDRDSSIVAHLFDERNPAVKKLLSMAIKSARAKGKYVGICGQGPSDHP 762 IG+NDL Q T+ DR + V++L+ +PA+ +L+ M IK+A ++GK+VG+CG+ D Sbjct: 452 IGTNDLIQYTMAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-E 510 Query: 763 ELAEWLMQEGIGSVSLNPDTVVDTWLRLAKLKSE 796 L+ G+ S++ +++ +L KL E Sbjct: 511 VAIPLLLGLGLDEFSMSATSILPARSQLLKLSKE 544
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 31.6 bits (71), Expect = 0.003 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 2/64 (3%) Query: 3 TIRPVFYVSDGTGITAETIGHSLLTQF--SGFNFVTDRMSFIDDAEKARDAAMRVRAAGE 60 + V+ G T+E I S+ F + T S A +V A Sbjct: 78 SKEVSINVNFSVGFTSEFIQASVEYGFGITIGEQNTIERSVSTTAGPNEYVYYKVYATYR 137 Query: 61 RYQV 64 +YQ Sbjct: 138 KYQA 141
>BACTRLTOXIN#Bacterial toxin signature. Length = 266 Score = 28.3 bits (63), Expect = 0.012 Identities = 7/30 (23%), Positives = 14/30 (46%) Query: 73 YDLCDPVTGEPDPSAYVRLYRDARQAETTH 102 YD+ + D S Y+ +Y D + ++ Sbjct: 225 YDMMPAPGDKFDQSKYLMMYNDNKTVDSKS 254
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (264), Expect = 1e-29 Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 11/255 (4%) Query: 2 RSILITGAGSGIGAGIATQLATDGHHLIVSDMELPAAERTAHALRQAGGSAEALALDVTD 61 + ITGA GIG +A LA+ G H+ D E+ +L+ AEA DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 62 ADSIAQALASASRTPQ---VLVNNAGLQHVAALDEFPMRQWALLVDVMLTGAARLSRAVL 118 + +I + A R +LVN AG+ + +W V TG SR+V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PGMRAAGYGRIVNIGSIHSLVASPYKSAYVAAKHGLVGLAKVIALETADCDITVNTLCPS 178 M G IV +GS + V +AY ++K V K + LE A+ +I N + P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 YVRTPLVERQIADQARTSGIAEEAVIRDVMLK---PMPKGAFIDYDELAGTVAFLMSHAA 235 T + AD+ E VI+ + +P ++A V FL+S A Sbjct: 189 STETDMQWSLWADEN-----GAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 236 RNITGQSIAIDGGWT 250 +IT ++ +DGG T Sbjct: 244 GHITMHNLCVDGGAT 258
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 9e-05 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 19/189 (10%) Query: 140 QEAAQTLQKWREENA-PWLDMPAFGLNRN----HQSRLQKLARAQ----QDFQAQSEAYG 190 Q Q L + E N P L +P +N RL L + Q Q+ + Q E Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Query: 191 EQLKAAIEQAFARFASKLSEHESSGSQLTSARALFD------LWIEAAEESYADVALSNQ 244 ++ +A AR + S+L +L + E Y + Sbjct: 210 DKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA---VN 266 Query: 245 FREVYGGFANAHMRLRAALQEEIEQLSERIGMPTRSEMDAAHRRIAELE-RLVRRMLRTA 303 VY + +EE + +++ ++ I L L + R Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326 Query: 304 ASPARKPAA 312 AS R P + Sbjct: 327 ASVIRAPVS 335
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 2e-17 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 1002 RLLLVDDDQDSREAVMQFLTLAGAQVQAAGSVDAAEQCLANAHFDVLVSDIAMPLRDGYD 1061 +L+ DDD R + Q L+ AG V+ + + +A D++V+D+ MP + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1062 LIRTVRSGRADLPRQIPAIALTAYVREEDRDRAVVAGFDAHMGKPVEPPGLVDLIERLIL 1121 L+ ++ R DLP + ++A +A G ++ KP + L+ +I R + Sbjct: 65 LLPRIKKARPDLPV----LVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 1122 PTRAVRDAVE 1131 + +E Sbjct: 121 EPKRRPSKLE 130
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 634 bits (1637), Expect = 0.0 Identities = 257/1120 (22%), Positives = 468/1120 (41%), Gaps = 132/1120 (11%) Query: 1 MLLFGLIALRSLKVNLLPDLSYPTLTVRTEYTGAAPAEIETLVTEPVEEAVGVVKNLRKL 60 +++ G +A+ L V P ++ P ++V Y GA ++ VT+ +E+ + + NL + Sbjct: 19 LMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYM 78 Query: 61 KSIS-RTGQSDVVLEFAWGTNMDQASLEVRDKMEAL--SLPLETRPPVLLRFNPSTEPIM 117 S S G + L F GT+ D A ++V++K++ LP E + + S+ +M Sbjct: 79 SSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLM 138 Query: 118 RLALSPKQAPASDTDAIRQLTGLRRYADEDLKKKLEPVAGVAAVKVGGGLEDEIQVDIDQ 177 + + Y ++K L + GV V++ G + +++ +D Sbjct: 139 VAGFV-------SDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYAMRIWLDA 190 Query: 178 QKLAQLNLPIDNVITRLKEENVNISGGRL------EEGSQRYLVRTVNQFVDLDEIRNML 231 L + L +VI +LK +N I+ G+L + +F + +E + Sbjct: 191 DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVT 250 Query: 232 VTTQSSSGSAAEAAMLQMYAIAASTGSQAALAAAAEVQSTSSSSSSSIAGGMPVRLKDVA 291 + S G VRLKDVA Sbjct: 251 LRVNSD--------------------------------------------GSVVRLKDVA 266 Query: 292 QVSQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALRKRLQQLKATVPGDVEITTI 351 +V G + I R+ GK A L I AN + TA A++ +L +L+ P +++ Sbjct: 267 RVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP 326 Query: 352 EDQSHFIEHAISDVKKDAVIGGVLAILIIFLFMRDGWSTFVISLSLPVSIITTF----FL 407 D + F++ +I +V K +L L+++LF+++ +T + ++++PV ++ TF Sbjct: 327 YDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAF 386 Query: 408 GLSLNVMSLGGLALATGLGVDDSIVVLESIAKA-RERGLSVLDAAIAGTREVSMAVMAST 466 G S+N +++ G+ LA GL VDD+IVV+E++ + E L +A ++ A++ Sbjct: 387 GYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIA 446 Query: 467 LTTIAVFVPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTLIPMLSSLKGAPPMAFPDE 526 + AVF+P+ F G G ++R ++T+ A+A+S++V++ L P L + Sbjct: 447 MVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA------------ 494 Query: 527 PSHPQWQPERRWLKPVAAGRRGAGASVRYAFFGAAWAVVKVWRGLSRVVGPVMRKASDLA 586 LKPV+A + FFG Sbjct: 495 ----------TLLKPVSAEHHEN----KGGFFGWFNTT---------------------- 518 Query: 587 MAPYARAERGYLAMLPAALRRPGLVLGLAAAAFIGTVFLVPMLGADLIPQLAQDRFEMTV 646 + + Y + L G L + A G V L L + +P+ Q F + Sbjct: 519 ---FDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMI 575 Query: 647 KLPSGTPLAQTDALVRELQ--LAHDKDPGVASLYGVSGSGTRLDANPTESGENIGKLTVV 704 +LP+G +T ++ ++ ++ V S++ V+G +G L Sbjct: 576 QLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSF--SGQAQNAGMAFVSLKPW 633 Query: 705 MAGCGSPAVEAAATERLRSSMVGHPSAQV-DFARPALFSF--STPLEVEL---RGQDLSE 758 G A R + + V F PA+ +T + EL G Sbjct: 634 EERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDA 693 Query: 759 LERAGQKLAAMLRAN-GHYADVKSTGEEGFPEIQIRFDQERAGALGLTTRQIADVIVKKV 817 L +A +L M + V+ G E + ++ DQE+A ALG++ I I + Sbjct: 694 LTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTAL 753 Query: 818 RGDVATRYSFRDRKIDVLVRAQQSDRASVDAIRQLIVNPGSSRPVRLAAVAKVLAATGPS 877 G + R R + V+A R + + +L V + V +A G Sbjct: 754 GGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSP 813 Query: 878 QIHRADQTRVAIVSASL-KDIDLGGAVREVETMVRKAPLAAGVGMHIGGQGEELAQSVKS 936 ++ R + + G A+ +E + K P AG+G G + S Sbjct: 814 RLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLP--AGIGYDWTGMSYQERLSGNQ 871 Query: 937 LLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMTGKPISVVVFIGLI 996 ++ +V+L +A+ +ES P ++ +PL +VG +LA + + V +GL+ Sbjct: 872 APALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLL 931 Query: 997 LLVGLVTKNAIILIDKVNQLRE-DGVPKREALIEGARSRLRPIIMTTLCTLFGFLPLAVA 1055 +GL KNAI++++ L E +G EA + R RLRPI+MT+L + G LPLA++ Sbjct: 932 TTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAIS 991 Query: 1056 MGEGAEVRAPMAITVIGGLLVSTLLTLLVIPVVYDLLDRR 1095 G G+ + + I V+GG++ +TLL + +PV + ++ R Sbjct: 992 NGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.9 bits (66), Expect = 0.013 Identities = 16/36 (44%), Positives = 22/36 (61%) Query: 161 RQLQQQVAQLDARIAQQLAARAELQVLRQVTGVGPV 196 RQL ++ +LD R+ + LA+ A L L Q GVG V Sbjct: 369 RQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKV 404
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 6e-18 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 2 LVVDDDQAMAQVVMGHIRSHGMEAFVATNSSELAEALRRREPDILLLDLMLKHEDGLDLL 61 LV DDD A+ V+ + G + + +N++ L + + D+++ D+++ E+ DLL Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLL 66 Query: 62 RALRKE-SDIPVIIMTGHRRDEIDRVV-GLELGADDYLPKPFGLHELTARIRAVLRR 116 ++K D+PV++M+ + + E GA DYLPKPF L EL I L Sbjct: 67 PRIKKARPDLPVLVMSAQ--NTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 35.4 bits (81), Expect = 7e-05 Identities = 13/91 (14%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 2 RQDDQRLIRLLAATLTRRPRSNLT--ELAAGAGISRATLYRFAPTRAAIVEKVTAEAWVR 59 ++ Q ++ + +++ S+ + E+A AG++R +Y ++ + ++ + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 60 LQAALPG--GDASPDPMARLRRMTHALVEDL 88 + DP++ LR + ++E Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLEST 100
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 28/213 (13%) Query: 100 EAALARARGELTRSEAELENATAQFERSQQLVQRQVISRQDFDT-ARSNFKSTQAAVASA 158 E A EL +++LE ++ +++ + Q F + T + Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKE---EYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 159 RAALKTAQLDLGFATVRAPIDGRIGRALV-TEGALVGQGGDATEMALVQQLDPIFADFNR 217 L + + +RAP+ ++ + V TEG +V T M +V + D + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA--ETLMVIVPEDDTLEVTALV 372 Query: 218 PVAEALKLRGRARKGDAPLKVVIDIPELGETREGDL------LFADMRVDETTDTV--SL 269 K G G +I + TR G L + D D+ V + Sbjct: 373 QN----KDIGFINVG---QNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425 Query: 270 RAQ------FDNRDNLLLPGMFVRVRTPNGTAS 296 + N++ L GM V G S Sbjct: 426 ISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRS 458 Score = 40.6 bits (95), Expect = 8e-06 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 8/133 (6%) Query: 55 PGRVSPM-RVAQVRARVAGIVLARRFEEGSDVKAGQVLFQIDPAPFEAALARARGELTRS 113 G+++ R +++ IV +EG V+ G VL ++ EA + + L ++ Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 114 EAELENATAQFERSQQLVQRQVISRQDFDTARS----NFKSTQAAVASARAALK--TAQL 167 E RS +L + + D ++ + + + + Q Sbjct: 147 RLEQTRYQIL-SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Query: 168 DLGFATVRAPIDG 180 +L RA Sbjct: 206 ELNLDKKRAERLT 218
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1072 bits (2774), Expect = 0.0 Identities = 503/1030 (48%), Positives = 696/1030 (67%), Gaps = 10/1030 (0%) Query: 1 MSRFFIDRPNFAWVVAIFISLAGVLALRTLPVEKYPEVAPPQISIMATYPGASAQVVNDA 60 M+ FFI RP FAWV+AI + +AG LA+ LPV +YP +APP +S+ A YPGA AQ V D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTSVIEQELNGVRDMLYYDSSS-SNGSAQITIMFQPGTDPNIAQVDVQNRIRQSESRLPA 119 VT VIEQ +NG+ +++Y S+S S GS IT+ FQ GTDP+IAQV VQN+++ + LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 AVTQLGLQVEQTTAGFLMLYSLVYKDATAAQDVVRLNDYAARVVNDEIRRVPGVGRVQFF 179 V Q G+ VE++++ +LM+ V + QD ++DY A V D + R+ GVG VQ F Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQD--DISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 180 GAEAAMRVWVDTQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAQDQELTTTLVVRG 239 GA+ AMR+W+D L Y L+ VDV N ++ QN Q+AAG LG P Q+L +++ + Sbjct: 179 GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 240 QMESPQEFGQIVLRAQANGAVVHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGN 299 + ++P+EFG++ LR ++G+VV L DVA++ELG ENY + NG PAAG ++LA G N Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 300 AVATVAAVRKRLQELSQSFPADIAYSVPFDSSTFVNVAIKKVLHTLLEAMALVFLVMFVF 359 A+ T A++ +L EL FP + P+D++ FV ++I +V+ TL EA+ LVFLVM++F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 360 LQNIRYTLIPAIVVPVCLLGTFAVMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENVER 419 LQN+R TLIP I VPV LLGTFA++ G+S+N ++MF MVLAIG+LVDDAIVVVENVER Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 420 LMADEGLLPRDASMKAMTQVGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSI 479 +M ++ L P++A+ K+M+Q+ GA+VGI +VL+AVF+P+AF GS G IYRQFS + ++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 480 LFSGFLALTMTPALCATCLAPI--DGHQEKKGFFGWFDRNFNALTSRFDRLNHRLVHRAG 537 S +AL +TPALCAT L P+ + H+ K GFFGWF+ F+ + + +++ G Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 538 RCMLVYAVLLGVLGLAYVRLPEAFVPQEDEGYMIVDMQLPPGASYSRTRAVGQQVNDYL- 596 R +L+YA+++ + + ++RLP +F+P+ED+G + +QLP GA+ RT+ V QV DY Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 597 -AARPSMQDVTLVYGFSFSGSGANAAMAFPSLKDWSER-GDSESVANEVAAANVALGRIS 654 + +++ V V GFSFSG NA MAF SLK W ER GD S + A + LG+I Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 655 DVTIMAVMPPPIEGLGNSGGFSLRVQDRGNLGRDALMQAVNQLLRAANQSP-KLAYAMVE 713 D ++ P I LG + GF + D+ LG DAL QA NQLL A Q P L Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 714 GLADAPQLRLEVDRGKAEALGVSFQSAMDVLSSAFGSTIVNDFVNRGRLQRVVVQGAAGD 773 GL D Q +LEVD+ KA+ALGVS +S+A G T VNDF++RGR++++ VQ A Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 774 RATPQSLDTLHVTSSTGRQVPLTAFTTQRWEQGPVQIARYNGYASVNLTGEAAPGISSGD 833 R P+ +D L+V S+ G VP +AFTT W G ++ RYNG S+ + GEAAPG SSGD Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 834 ALAEMERLAAALPQGIGYAWSALSYQEKAAGTQAPMLLGLALLVVFLLLVALYESWAIPF 893 A+A ME LA+ LP GIGY W+ +SYQE+ +G QAP L+ ++ +VVFL L ALYESW+IP Sbjct: 839 AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 894 SVMLIVPIGAVGATAAVWVAGLSNDVYFKVGLITIIGLAAKNAILIVEFAKELHAR-GAR 952 SVML+VP+G VG A + NDVYF VGL+T IGL+AKNAILIVEFAK+L + G Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 953 VPEAAMQAARLRFRPIVMTSLAFILGVIPLVIARGAGAASQNALGTGVIGGMLAASTLGV 1012 V EA + A R+R RPI+MTSLAFILGV+PL I+ GAG+ +QNA+G GV+GGM++A+ L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1013 VFTPIFFTWV 1022 F P+FF + Sbjct: 1019 FFVPVFFVVI 1028 Score = 61.4 bits (149), Expect = 1e-11 Identities = 85/509 (16%), Positives = 173/509 (33%), Gaps = 48/509 (9%) Query: 540 MLVYAVLLGVLGL-AYVRLPEAFVPQEDEGYMIVDMQLPPGASYSRTRAVGQQVNDYL-A 597 V A++L + G A ++LP A P + V P GA + V V + Sbjct: 12 AWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GAD---AQTVQDTVTQVIEQ 67 Query: 598 ARPSMQDVTLVYGFSFSGSGANAAMAFPSLKDWSERGDSESVANEVAAANVALGRISDVT 657 + ++ + S S + F D + +V L + + Sbjct: 68 NMNGIDNLMYMSSTSDSAGSVTITLTFQ------SGTDPDIAQVQVQNK---LQLATPLL 118 Query: 658 IMAVMPPPIEGLGNSGGF---SLRVQDRGNLGRDALMQAVNQLLRAANQSPKLAYAMVEG 714 V I +S + + V D +D + V ++ L+ + G Sbjct: 119 PQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK-----DTLS--RLNG 171 Query: 715 LADAP------QLRLEVDRGKAEALGVSFQSAMDVLSS-----AFGSTIVNDFVNRGRLQ 763 + D +R+ +D ++ ++ L A G + +L Sbjct: 172 VGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231 Query: 764 RVVVQGAAGDRATPQSLDTLHVTSST-GRQVPLTAFTTQRW-EQGPVQIARYNGYASVNL 821 ++ A P+ + + ++ G V L + IAR NG + L Sbjct: 232 ASII--AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGL 289 Query: 822 TGEAAPGISSGDAL----AEMERLAAALPQG--IGYAWSALSYQEKAAGTQAPMLLGLAL 875 + A G ++ D A++ L PQG + Y + + + + L + Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIM 349 Query: 876 LVVFLLLVALYESWAIPFSVMLIVPIGAVGATAAVWVAGLSNDVYFKVGLITIIGLAAKN 935 LV ++ + L ++ + VP+ +G A + G S + G++ IGL + Sbjct: 350 LVFLVMYLFL-QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDD 408 Query: 936 AILIVE-FAKELHARGARVPEAAMQAARLRFRPIVMTSLAFILGVIPLVIARGAGAASQN 994 AI++VE + + EA ++ +V ++ IP+ G+ A Sbjct: 409 AIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 995 ALGTGVIGGMLAASTLGVVFTPIFFTWVM 1023 ++ M + + ++ TP ++ Sbjct: 469 QFSITIVSAMALSVLVALILTPALCATLL 497
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.5 bits (71), Expect = 0.015 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 736 KLDRAALPAPDTQALDLHSYVTPQGELEQMLATLWSGLLGAAQVGRNDDFFALGGHSLLA 795 +L A T A V + + +A L + +D G S+ Sbjct: 209 QLQNAPADVQKTSANTGKKNVFTCENIRKQIAELLQ--ETPEDITDQEDLLDRGLDSVRI 266 Query: 796 VKLIERLRRLGWQIDVRALFARPTLAGLAENLQAASTNMVP 836 + L+E+ RR G ++ L RPT+ + L S ++P Sbjct: 267 MTLVEQWRREGAEVTFVELAERPTIEEWQKLLTTRSQQVLP 307
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 121 bits (305), Expect = 4e-32 Identities = 72/325 (22%), Positives = 120/325 (36%), Gaps = 43/325 (13%) Query: 78 NADLAQQAGAKGKGVKLAVLDDNLVQSYTPISGKVDSFNDYTASPGTPESSANALRGHGT 137 A +G+GVK+AVLD + + ++ ++T GHGT Sbjct: 30 QAPAVWNQT-RGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGT 88 Query: 138 IVSALVLGSAQDGFAGGVAPDADLFYARICAENSCGTQATRRAAVDLAAA-GVRIANLSI 196 V+ + + + GVAP+ADL ++ + G + A V I ++S+ Sbjct: 89 HVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSL 148 Query: 197 GASYPDAAASANAALAWKYALTPLVQADALIVASTGNEGAAEAS-----YPAATPVQEAS 251 G A K A V + L++ + GNEG + YP Sbjct: 149 GGPEDVPELHE----AVKKA----VASQILVMCAAGNEGDGDDRTDELGYPGCYN----- 195 Query: 252 VRNNWLAVGAINIDSAGNAAGLTSYSNHCGAAAQWCLVAPGSYTVPALAGSELGGQIAGT 311 ++VGAIN D + +SN + LVAPG + + G + +GT Sbjct: 196 ---EVISVGAINFDR-----HASEFSNSN---NEVDLVAPGEDILSTVPGGKY-ATFSGT 243 Query: 312 SFSTAAVSGVAAQVLGVYPW-----MTASQLQQTLLTTATDLGDPGVDALYGWGLVNAAK 366 S +T V+G A + + +T +L L+ LG + G GL+ Sbjct: 244 SMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG--NSPKMEGNGLLYLTA 301 Query: 367 AIKGPGQFASNWAVNVTSGYDSTFS 391 + + + +G ST S Sbjct: 302 V----EELSRIFDTQRVAGILSTAS 322
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 56.0 bits (135), Expect = 9e-11 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 114 SAELATAYSDAGKARAMLQQARLELARQKVLAADSIAAARDLQAAQQAFDSAQNDARAAS 173 EL S + + + A+ E L + I L+ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD--KLRQTTDNIGLLTLELAKNE 322 Query: 174 DRLAQLGVAAQATSHRRYVLRAPIAGRVVDLSAALGGFWNDTSAPLMTVADISQV-WLTA 232 +R + V+RAP++ +V L G T+ LM + +TA Sbjct: 323 ERQ------------QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 233 SVPEREIGQVFEGQQVTASLDAYPGQ---HFTGLVQHL--DDLLDPTTRTL-KVRVALNN 286 V ++IG + GQ ++A+P + G V+++ D + D + V +++ Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEE 430 Query: 287 HDGL-------LKPGMFARAQFQTR 304 + L GM A+ +T Sbjct: 431 NCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 36.0 bits (83), Expect = 2e-04 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 9/136 (6%) Query: 76 VLPERLVRVVPPLAGRVVALPKTLGDTVRAGDVLCVLDSAELATAYSDAGKARAMLQQAR 135 R + P V + G++VR GDVL L + A +D K ++ L QAR Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA---LGAEADTLKTQSSLLQAR 147 Query: 136 LELARQKVLAADSIAAARDLQAAQQAFDSAQNDARAASDRLAQLGVAAQATSHRR---YV 192 LE R S + + + D + + L + + S + Y Sbjct: 148 LEQTR---YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ 204 Query: 193 LRAPIAGRVVDLSAAL 208 + + + L Sbjct: 205 KELNLDKKRAERLTVL 220
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 639 bits (1651), Expect = 0.0 Identities = 233/1034 (22%), Positives = 426/1034 (41%), Gaps = 43/1034 (4%) Query: 11 QRRGIVWLVFVLIALYGTWSWTQLPVEAYPDIADVTSQVVTQVPGLGAEEVEQQITVPLE 70 +R W++ +++ + G + QLPV YP IA V PG A+ V+ +T +E Sbjct: 7 RRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIE 66 Query: 71 RALMGTPGLHVLRSRSLFA-LSLITLVFDDGTEGYFARQRVLERIQAVT--LPYGA-IPG 126 + + G L + S S A ITL F GT+ A+ +V ++Q T LP G Sbjct: 67 QNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQG 126 Query: 127 LDPYTSPTGEIYRYTLES--KTRSLRELSDLQFWTVIPRLQKVQGVADVTNFGGLTTQFS 184 + S + + S + ++SD V L ++ GV DV FG Sbjct: 127 ISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYAMR 185 Query: 185 LALEPDRLTRYGVSLQQVKSAITSNNAD------GGGSVMDRGEQSYVIRGIGLLGSLQD 238 + L+ D L +Y ++ V + + N GG + + + I + ++ Sbjct: 186 IWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEE 245 Query: 239 IGDVVV-SNSNGVPVLVKDLGEVRYDNVERRGILGKDKNPDTIEGIALLLKDSNPSVALQ 297 G V + NS+G V +KD+ V I + P L +N + Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKP-AAGLGIKLATGANALDTAK 304 Query: 298 GIHSAVEELNNSLLPKDVKVVPYLDRTALIDATLHTVSATLTEGMLLVCVVLLIFLGSPR 357 I + + EL P+ +KV+ D T + ++H V TL E ++LV +V+ +FL + R Sbjct: 305 AIKAKLAELQPFF-PQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 358 AAAIVSLTIPLSLLIAFIFMHHLKIPANLLSLG--AIDFGILVDGAVVLVENVLRLREEN 415 A I ++ +P+ LL F + N L++ + G+LVD A+V+VENV R+ E+ Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 416 SERALTAGDAIDATLHVARPIFFGMAVIGCAYLPLLAFERIEYKLFSPMAYAVGAALIGA 475 A + + + V+ ++P+ F ++ + + +A+ + Sbjct: 424 KLPPKEA--TEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 476 LLVALMLIPALAWLAFRKPRKMMH-----------NRVLEALGQRYRALLERSVGRRGWL 524 +LVAL+L PAL KP H N + Y + + +G G Sbjct: 482 VLVALILTPALCAT-LLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 525 LACAALALCVLAVLGGSIGRDFLPYIDEGSLWLQVQMPPGITLDKAARMANALRTATL-- 582 L AL + + VL + FLP D+G +Q+P G T ++ ++ + + L Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 583 EFPEVSYVVTQTGRNDDGTDYWTPSHIEASVGLRPYKDWPS-GMDKQGLIAALGARYAQM 641 E V V T G + G + A V L+P+++ + +I ++ Sbjct: 601 EKANVESVFTVNGFSFSGQ---AQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 642 PGYTVSMMQPMIDGVQDKLSGAHSDLTIKVFGDDLQQVRGVAEQVATALHAVPGA-ADIA 700 V +G +L I G + Q+ P + + Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFEL-IDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 701 VDVEPPLPNLQVRFDREAAARYGINAADVSDLIATGIGGSPIGQMYIGEKSYDLTVRFPQ 760 + ++ D+E A G++ +D++ I+T +GG+ + + L V+ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 761 RYRNDPQAIGALRLRTAAGAEIPLSAVASITTTSGQSVIVREMGRRNIIVRLNVRGRDLS 820 ++R P+ + L +R+A G +P SA + G + R G ++ ++ Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP---G 833 Query: 821 SFLSDAQATLVRHVRIDPQHMQLVWGGQFENLQRAQARLLVVLPTTLCIMFVLLFGAFGN 880 + DA A + P + W G + + + ++ + ++F+ L + + Sbjct: 834 TSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYES 893 Query: 881 LRQPTLVLAAVPLAMIGGLAALHLRGMTLNVSSAVGFIALFGVAVLNAVLMLAQINRLRQ 940 P V+ VPL ++G L A L +V VG + G++ NA+L++ L + Sbjct: 894 WSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLME 953 Query: 941 DPGMSLREAVVAGAVSRMRPVLMTATVAALGLTPAMLAAGLGSDVQRPLATVVVGGLITA 1000 G + EA + R+RP+LMT+ LG+ P ++ G GS Q + V+GG+++A Sbjct: 954 KEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSA 1013 Query: 1001 TALTLLLLPSLYYL 1014 T L + +P + + Sbjct: 1014 TLLAIFFVPVFFVV 1027 Score = 82.6 bits (204), Expect = 5e-18 Identities = 62/351 (17%), Positives = 139/351 (39%), Gaps = 29/351 (8%) Query: 682 VAEQVATALHAVPGAADIAVDVEPPLPNLQVRFDREAAARYGINAADVSDLIATG----I 737 VA V L + G D+ + +++ D + +Y + DV + + Sbjct: 158 VASNVKDTLSRLNGVGDVQLFGAQYA--MRIWLDADLLNKYKLTPVDVINQLKVQNDQIA 215 Query: 738 GGSPIGQMYIGEKSYDLTVRFPQRYRNDPQAIGALRLRTAA-GAEIPLSAVASITTTS-G 795 G G + + + ++ R++N P+ G + LR + G+ + L VA + Sbjct: 216 AGQLGGTPALPGQQLNASIIAQTRFKN-PEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274 Query: 796 QSVIVREMGRRNIIVRLNVRG--------RDLSSFLSDAQATLVRHVRID-PQHMQLVWG 846 +VI R G+ + + + + + + L++ Q + +++ P Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334 Query: 847 GQFENLQRA--QARLLVVLPTTLCIMFVLLFGAFGNLRQPTLVLAAVPLAMIGGLAALHL 904 + + +A +LV L +M++ L N+R + AVP+ ++G A L Sbjct: 335 LSIHEVVKTLFEAIMLVFL-----VMYLFL----QNMRATLIPTIAVPVVLLGTFAILAA 385 Query: 905 RGMTLNVSSAVGFIALFGVAVLNAVLMLAQINRLRQDPGMSLREAVVAGAVSRMRPVLMT 964 G ++N + G + G+ V +A++++ + R+ + + +EA ++ Sbjct: 386 FGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGI 445 Query: 965 ATVAALGLTPAMLAAGLGSDVQRPLATVVVGGLITATALTLLLLPSLYYLM 1015 A V + P G + R + +V + + + L+L P+L + Sbjct: 446 AMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 2e-25 Identities = 28/153 (18%), Positives = 61/153 (39%) Query: 5 APVVYLIDDDASMRAALEDLFASVGLQVCAFGSTDQFLAHRLQDAPACLVLDIRMPGQSG 64 + + DDDA++R L + G V + +V D+ MP ++ Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 65 MEFHRRMVESGFALPTIFITGHGDIAMGVEAMKNGAIEFLTKPFRDQALLDAIQDGIRRD 124 + R+ ++ LP + ++ ++A + GA ++L KPF L+ I + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 125 RTRRQSDAVAAELRARWESLSSGEQDVTRLVVQ 157 + R ++ S+ Q++ R++ + Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>FLAGELLIN#Flagellin signature. Length = 507 Score = 32.7 bits (74), Expect = 0.027 Identities = 48/325 (14%), Positives = 84/325 (25%), Gaps = 12/325 (3%) Query: 518 GNNTYSGGTTLGAGSVLLETSGALGTGTVTAAGGSLDTTAPLSLTNNFALTNTLGLGPSG 577 ++G L + + GA T+T +D + N +G Sbjct: 127 NQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLK 186 Query: 578 NALTLSGTLAGVGGVNKTGAGTLTLGGLNTYSGGTNLASGTLQLGTASALGTGALNVTGA 637 ++ + G + T + + L T A Sbjct: 187 SSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTA 246 Query: 638 SNLSTTAPLTVANAISLAAALNLPSTQALTLTGAISGAGSLIKSGAGDLTLTNANAYTGG 697 +L T T A + A A + G G K + N G Sbjct: 247 VDLFKTTKSTAGTAEAKAI--------AGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298 Query: 698 TTLSAGRLVVGSNAALGTGTLTASGGELDATTATTLGNAMALTGTMGVGSSGNALNLTGT 757 + + G L +TA +DA T + N N + Sbjct: 299 VSTTIN----GEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAK 354 Query: 758 ISGAGALNKLGTGTLTLGGLNTYSGGTSLNAGTLQVASGTALGTGALDVTGAATLQNTAA 817 +S A N + + Y+ + + TL + T + T A Sbjct: 355 LSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAK 414 Query: 818 ATLNNAVTLSTGTLTLDGAQALTLG 842 + N + L+ A +LG Sbjct: 415 KSTANPLASIDSALSKVDAVRSSLG 439
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.4 bits (159), Expect = 2e-15 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 10/142 (7%) Query: 9 TKDRILGAAEELFAQHGFAGTSLRQLTTQADVNIAAVNYHFGSKENLVNEVFRRRMDEMT 68 T+ IL A LF+Q G + TSL ++ A V A+ +HF K +L +E++ + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 69 TARLQQLEAAKKSQPGELTAVLAAFVEPALALAQDRQNGGAFVRVIAR-----AYAEKND 123 L+ PG+ +VL + L + + +I Sbjct: 72 ELELEYQAK----FPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 124 NL-RTFLSDHYGHVLREFGKAI 144 R + Y + + I Sbjct: 128 QAQRNLCLESYDRIEQTLKHCI 149
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.3 bits (84), Expect = 8e-04 Identities = 31/211 (14%), Positives = 59/211 (27%), Gaps = 23/211 (10%) Query: 182 AHAQTLQAAREQLALRARRAANLSDSISVLTRERAALLQQLHGCNVQTDAVSAAMQDLQA 241 A Q++ Q L R LS SI + L + + NV + V ++ Sbjct: 134 ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193 Query: 242 NILSARAALHALPVDPQLRAVVTHASKSAANTHQSADSSPLQLTCTRLENALRDARARGD 301 + + K + A+ + R EN R ++R D Sbjct: 194 QFSTWQNQK---------------YQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 302 ALAKAVFFGRGSAQA--------AEAEQALARTNAQIYQLQSAYAQARDALQSDQASSSA 353 + + + A EA L +Q+ Q++S A++ Q Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 354 SAPASRTLASHLAAEQSQEIQALRTQLARDE 384 + + E+ + Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASV 329
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 71.1 bits (174), Expect = 5e-16 Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 16/118 (13%) Query: 162 INSDILFGTGSAALAGNARTTLSTLASVLRD---APNGVRVEGYTDNQPIATAQFPSNWE 218 + SD+LF A L + L L S L + V V GYTD I + + N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272 Query: 219 LSAARAASVVHLFADDGVAPQRLAMVGYGEFRARADNSTEAGRNA---------NRRV 267 LS RA SVV G+ +++ G GE N+ + + +RRV Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 330
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 32.1 bits (72), Expect = 0.003 Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 16/160 (10%) Query: 28 PPAAVAVETAALAHADLALAEPPVQAAALPEAAAVSEAATSNAIAAVLS--------ADA 79 P + V A A+ + + E P + A + A+AAV AD Sbjct: 63 PLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAAVADKNTTKDEKADD 122 Query: 80 IAADFLAEMDADPAFGPPVVAAPSAADIAADFLAEMDADPAFGTAPTAVDLLTADLLAEM 139 + D A + A A P P D + L PT LT++ L Sbjct: 123 LNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPT--------EKPTLFTKLTSEQLTTA 174 Query: 140 DADPAFGLETAPVAVPAPAPAPKPEPHAAPAPMRAAPAPT 179 D A G P+ K E + P+P+ AA +P Sbjct: 175 QPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPL 214
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.3 bits (70), Expect = 0.019 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 709 QNAALVEEATAAARSMEEQAGHLAEAVSVFKLDQSAAPVAQTARVRPIASRPAAVKGAAA 768 AA AAA EQA AEA + + A + + + V AA Sbjct: 207 LTAAKASIEAAAANKAREQAA--AEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAG 264 Query: 769 KPLARAAATAARPAKS 784 + L + A AA A++ Sbjct: 265 RGLIQVAQGAASLAQA 280
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 8e-15 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%) Query: 8 RVLIVDDSAVVRQMLTEILSRDAGIEVVGSAADPLLAREKIKRLNPDVITLDVEMPRMDG 67 +L+ DD A +R +L + LSR AG +V ++ I + D++ DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSR-AGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 68 LVFLENLMRLRP-TPVVMISSLTERGADTTLQALSLGAVDFVSKP 111 L + + RP PV+++S+ T ++A GA D++ KP Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 4e-21 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 5/150 (3%) Query: 462 RMLVADDHEANRMVLQRLLEKAGHRVMCVNGAEQVLDAMADEDFDAVIVDLHMPGMSGLD 521 +LVADD A R VL + L +AG+ V + A + +A D D V+ D+ MP + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 522 MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTVAELAV 581 +L +++ + PV+V+SA T + GA +L KP +L+ + A+ Sbjct: 65 LLPRIKKARP----DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII-GRAL 119 Query: 582 STRPLATQAPVVQAPTSFEGVLDASVLDEL 611 + + V ++ + E+ Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 6e-20 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 11/161 (6%) Query: 30 IVIVDDQMSARTMLRHVIEDIAPELKVYDFGDPLDALAWCEAGRVDLLLLDYRMPGMDGL 89 I++ DD + RT+L + V + W AG DL++ D MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 90 EFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVKPIRPRELRARCSNLLQL 149 + R+++ D+P+++++ A E G D+L KP EL L Sbjct: 64 DLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 150 RQQSESVKQRALSLEQRLL---ASMNEVEERERETLSRLAR 187 ++ S + L+ A+M E+ L+RL + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEI----YRVLARLMQ 158
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 5e-05 Identities = 55/306 (17%), Positives = 83/306 (27%), Gaps = 65/306 (21%) Query: 73 FGMSDQAAFAAATFLGLF-----VGAALLSPFADRFGRRPVFTFALIWYTAATVAMGLQS 127 S+ L L+ A +L +DRFGRRPV +L M Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP 94 Query: 128 TAAGVIVLRFVVGIGLGIELVTIDTYLSELVPRHMRGAAFAF---AFFVQFLAVPTVALT 184 + + R V GI G Y++++ R F F F +A P + Sbjct: 95 FLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL 153 Query: 185 AWLLVPHAPLGVSGWRWVVLLSGAFALAIWWLRRRLPESARWLAAHDRHAEADAVVTELE 244 PHAP + L F + L E Sbjct: 154 MGGFSPHAPFFAAA----ALNGLNFLTGCFLLP--------------------------E 183 Query: 245 ARCMRDAGAPLPEPQTATSLPAGVVPTALLWRAPYRARIGMLVVFHVFQAIGFFG----- 299 + S W ++ VF + Q +G Sbjct: 184 SHKGERRPLRREALNPLAS---------FRWARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 300 -FG----NWLPALISAQGAGAGVTKSLAYSFAISLAYPLAPLLLLRFAQRWENKWQITAS 354 FG +W I A G+ SLA + + + R +R + A Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAM-------ITGPVAARLGERRALMLGMIAD 287 Query: 355 ALGAVL 360 G +L Sbjct: 288 GTGYIL 293
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 152 bits (386), Expect = 1e-44 Identities = 86/289 (29%), Positives = 126/289 (43%), Gaps = 37/289 (12%) Query: 173 QRGFIDTDAASAQTVTQGRGVVIAVVDTGVDTNHPDLKARIRDVHDLVD----DKPVMTS 228 RG A + T+GRGV +AV+DTG D +HPDLKARI + D D + Sbjct: 23 PRGVEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKD 82 Query: 229 TDSHGTEVAGIIAAGSNNHQGIVGMAPKAMLSVYKACWYAPTVGATARCNTFTLAKALAA 288 + HGT VAG IAA N + G+VG+AP+A L + K + + + + Sbjct: 83 YNGHGTHVAGTIAATENEN-GVVGVAPEADLLIIKVLNKQGSGQYDW------IIQGIYY 135 Query: 289 INNSSARVINLSLGGPAD-PLLSKMLEQLVQQGRIVVAAM------PPNERLDGFPNDVP 341 +I++SLGGP D P L + +++ V +V+ A G+P Sbjct: 136 AIEQKVDIISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYN 195 Query: 342 GVLVV--------RSSSATPAMPGVLSAPGKDILTTQPNGRYDFTSGSSMATAHVSGMAA 393 V+ V S + L APG+DIL+T P G+Y SG+SMAT HV+G A Sbjct: 196 EVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALA 255 Query: 394 LLLSLQPSMDAKALRELMQRTSKVS-----------NGQLQVNAGAAVQ 431 L+ L + + L E + G + A + Sbjct: 256 LIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLYLTAVEE 304
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.9 bits (166), Expect = 5e-14 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 568 QGQQVLVVEDDEQVRLLVTELLSELGYQADVVADADAALPILASPRRIDLLVTDVGLPGL 627 G +LV +DD +R ++ + LS GY + ++A +A+ DL+VTDV +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDE 60 Query: 628 NGRQLAEIARQSRRDLPVIFMTGYAETARDRGEFLGEGMSMIAKPFTLGEFSGKLHEVLG 687 N L +++R DLPV+ M+ + KPF L E G + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 688 P 688 Sbjct: 121 E 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 5e-19 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 2 LVEDDDAIREMAADILGDEGYHVVVSADAEQALTQLTEACPFDLLLSDICLPGMNGRDLA 61 + +DD AIR + L GY V ++++A + DL+++D+ +P N DL Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENAFDLL 66 Query: 62 DQARSICPALPIVFMTGYAGEIAKRADFLDTGMR-LLTKPFSLRDLLVIVQTAL 114 + + P LP++ M+ + G L KPF L +L+ I+ AL Sbjct: 67 PRIKKARPDLPVLVMSAQ-NTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 76.2 bits (187), Expect = 1e-18 Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 10/156 (6%) Query: 87 PAQPTAGAPADDTIA---PLPAPLPAQDGASDMPQAKPPADTPTLVDTAPPAPPAPRPLT 143 +P P + + P P P P + Q K +P AP Sbjct: 79 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAP---- 134 Query: 144 EDAAPGAPGSAAPSKAPVAGGDRPVPIEGQMPPPRYPSAALRRGDSGDVVVRVDVDATGN 203 A P + + A + PV P P+YP+ A G V V+ DV G Sbjct: 135 --ARPTSSTATAATSKPVTSVASG-PRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGR 191 Query: 204 PGGVTLVQRSGSRDLDRAAMEAVRHWRFHPAQRNGQ 239 V ++ + +R A+R WR+ P + Sbjct: 192 VDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSG 227
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 47.7 bits (113), Expect = 3e-09 Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 5/120 (4%) Query: 26 AKDPQPLPAASRQILPTTDGPRAMTMVAHQPARPAVSSVEAKPLP---GNAMPSYPPAVA 82 P SR P + A + A + P P YP Sbjct: 113 QPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQ 172 Query: 83 HAGVQGNRTARLQLDVQGRVSDVTIVDRGGSDDPRLDAAVVESLRQWRFEPATRDGHAVV 142 ++G + + GRV +V I+ + + V ++R+WR+EP VV Sbjct: 173 ALRIEGQVKVKFDVTPDGRVDNVQILSAKPA--NMFEREVKNAMRRWRYEPGKPGSGIVV 230
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 31.1 bits (70), Expect = 0.005 Identities = 15/72 (20%), Positives = 21/72 (29%) Query: 174 SVIAGAALATLAVMAVLELRPPAPAPAALRTAVSSPAPAPARPVASNTPSATTAQPTPPP 233 SV A+ + + PAPA + P A P +P P P Sbjct: 21 SVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEP 80 Query: 234 AAVPMPLAPVTP 245 +P P Sbjct: 81 EPIPEPPKEAPV 92
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.9 bits (62), Expect = 0.011 Identities = 9/22 (40%), Positives = 18/22 (81%), Gaps = 2/22 (9%) Query: 12 RTKGFSLLEVLIAIVVLAFGLL 33 + +GF+LLE+++ IV++ G+L Sbjct: 6 KQRGFTLLEIMVVIVII--GVL 25
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 36.8 bits (85), Expect = 1e-05 Identities = 11/31 (35%), Positives = 21/31 (67%) Query: 4 RRFAGFTLVELMITIVVLAILLTIAFPSFRG 34 + GFTL+E+M+ IV++ +L ++ P+ G Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMG 35
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 71.2 bits (174), Expect = 7e-17 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 3/194 (1%) Query: 12 ALAGRVVLITGAAGGLGAAAAQACAAAGATVVLLGRKLRPLERVYDAVAALGSEPLLYPL 71 + G++ ITGAA G+G A A+ A+ GA + + LE+V ++ A +P Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 72 DLAGATPDDYATLARRLQTELGGLHGLLQCAADFAGLTPAELAAPADFARTLHVNLTARA 131 D+ + R++ E+G + L+ A + ++ T VN T Sbjct: 65 DV--RDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 132 WLTQACLPLLRQQHDAAVVFVVDDPARVGQAYWGAYGAAQHAQRGLIASLHHETAAGPVR 191 +++ + + ++V V +PA V + AY +++ A L E A +R Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 192 VSGLQPGPMRTALR 205 + + PG T ++ Sbjct: 182 CNIVSPGSTETDMQ 195
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 93.1 bits (231), Expect = 2e-27 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 9/111 (8%) Query: 5 ILNVVYVLVALAMIALILMQRGAGAAAGSGFGAGASGTVFGSQGASNFLSKSTKWLAVVF 64 L VV+++VA+ ++ LI++Q+G GA G+ FGAGAS T+FGS G+ NF+++ T LA +F Sbjct: 4 ALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLF 63 Query: 65 FSISLFMAWYATHGARPTDQNLGVMSQSATPAPAAAGELTQPLPQAPAAGA 115 F ISL + ++ + + APA + Q P APA Sbjct: 64 FIISLVLGNINSNKTNKGSEWENL------SAPA---KTEQTQPAAPAKPT 105
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 64.7 bits (157), Expect = 2e-14 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 2/179 (1%) Query: 8 ALITGASSGIGREIARAYAKRGVPLLLTARREDRLHALADELRSAVRV-EVLPADLADPA 66 A ITGA+ GIG +AR A +G + ++L + L++ R E PAD+ D A Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 67 AAEALATQIQRNGWTVGTLVNNAGYGVPGRYLHNDWPTHARFLQVMVTAVCELTWRLLPM 126 A + + +I+R + LVN AG PG V T V + + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 127 IRASGQGRILNVASFAALTPSADGQTLYAASKSFMLRFSESLALENADCGVKVCALCPG 185 + G I+ V S A P YA+SK+ + F++ L LE A+ ++ + PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRT-SMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.3 bits (60), Expect = 0.012 Identities = 8/40 (20%), Positives = 15/40 (37%) Query: 20 PILEQARKRTKPVTVDMYEVWCAVLYLLRTGRPWRALPSD 59 P+L R + +++ L+L G + P D Sbjct: 710 PVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPSPED 749
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.0 bits (78), Expect = 0.001 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 66 ADTLFAIASNTKAFTAASLSILADEGKLSLEDKVI----DHLPWFRMSDPYVSGEMRIRD 121 AD F + S K ++ D G LE K+ D + + +S+ +++ M + + Sbjct: 58 ADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGE 117 Query: 122 LLAHRSGLS-LGAGDLLF 138 L A +S A +LL Sbjct: 118 LCAAAITMSDNSAANLLL 135
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 29.7 bits (66), Expect = 0.006 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%) Query: 70 HALLGDQIAANAVANGWAGVLIHG---CVRDVEMLA 102 +LLGD N V GWA I C DV LA Sbjct: 363 CSLLGDNFLKNGVIGGWAAEAIEKNPPCKNDVIYLA 398
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 29.7 bits (66), Expect = 0.010 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Query: 181 PCTQRLKFVDSSVSFQPTADQHRLIFVIDRLGQ 213 PC +FV S + PTAD +L++ IDRLGQ Sbjct: 141 PC--EAEFVRSDPATTPTADG-KLVWKIDRLGQ 170
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 36.7 bits (85), Expect = 4e-04 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 15/113 (13%) Query: 133 MVLFLSSRRNGRSLGD---LVREEMGQVPGTIAL------------FGAFLIMIIILAVL 177 + G S GD L+ ++P I ++ I V+ Sbjct: 823 SMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 178 AMVVVKALAESPWGMFTVIATMPIALMMGVYMRYIRVGKIGEISVVGLILLLG 230 + + AL ES +V+ +P+ ++ + + K +VGL+ +G Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 27.6 bits (61), Expect = 0.043 Identities = 11/34 (32%), Positives = 15/34 (44%) Query: 77 FGNRDADVDTDTDTDTSASSSANVSANQTGTVAG 110 FGN ADV+ + AN S +GT+ Sbjct: 117 FGNARADVEASGGNTFNGKGGANASNTFSGTLTV 150
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.2 bits (203), Expect = 3e-20 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 4/136 (2%) Query: 2 RLLVIEDNRNMVANLFDYFEARGYTLDAAPDGITGLHLATTQHYDALILDWMMPRMDGPA 61 +LV +D+ + L GY + + T D ++ D +MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRRLREQHQSELPVIMLTARDELPDKIAGFRAGADDYLTKPFALPE---LEVRIEALLA 118 +L R+++ + +LPV++++A++ I GA DYL KPF L E + R A Sbjct: 65 LLPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 119 RAHGRRRGKLLQVADL 134 R + L Sbjct: 124 RRPSKLEDDSQDGMPL 139
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 113 bits (285), Expect = 7e-30 Identities = 66/395 (16%), Positives = 125/395 (31%), Gaps = 48/395 (12%) Query: 51 GTVVPADGMIAITTPQSGVVANVGVVQGQRVAAGQVLFVL-AAEHRDDRGRPSQQAAAVL 109 G + + I ++ +V + V +G+ V G VL L A D + Sbjct: 88 GKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQAR 147 Query: 110 AEQQRLTAEAM--------------------------VQLRAQGRLQQQAAARALAGLRN 143 EQ R + ++L + + Q Sbjct: 148 LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKEL 207 Query: 144 RLEQVDAEL-GVLRHRQQLTQSIE------QRYRTALTRGLVSQQFVDEKQADVLDQRAH 196 L++ AE VL + + + L + +++ V E++ ++ Sbjct: 208 NLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE 267 Query: 197 ALELQRERLTLADALAQAQAELQQLPVSLRQQLA--LAGASLQADRRTAIEQAAA---SR 251 + + + + A+ E Q + + ++ L + T Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQA 327 Query: 252 WEVRAPRAGRVA-LRPLQRGQAVGQGQRLADLLPTSTATEVVLYAPSRAAGLIGPGIPVQ 310 +RAP + +V L+ G V + L ++P EV ++ G I G Sbjct: 328 SVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387 Query: 311 LRFDALPYQHYGQFAGRVVEIAA-APEPPRADAALVSEPLYRVRVRLAGDAALRAGHAAV 369 ++ +A PY YG G+V I A E R ++ V + + + Sbjct: 388 IKVEAFPYTRYGYLVGKVKNINLDAIEDQR------LGLVFNVIISIEENCLSTGNKNIP 441 Query: 370 LRPGMRVQGTLALEWRRFSQWAFEPLS-SLHGTLR 403 L GM V + R + PL S+ +LR Sbjct: 442 LSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLR 476
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.045 Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 14/145 (9%) Query: 422 ISLDETTTRADVVAL-AQLFGAMADVDALDAATADALPQGLLRSSAFLTHPVF------- 473 + L AD + + L A + + ++ L P F Sbjct: 125 LKLTALGAEADTLKTQSSLLQARLEQ-TRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 474 ---NTHHSEHELLRYMRSLADKDLAMDRTMIPLGSCTMKLNATAEMIPVTWPEFGAIHPL 530 T + + + K+L +D+ + ++N + V L Sbjct: 184 VLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243 Query: 531 APAEQSAGYAQLIDELEAMLVECTG 555 +Q+ ++ E E VE Sbjct: 244 L-HKQAIAKHAVL-EQENKYVEAVN 266
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.003 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 25/173 (14%) Query: 4 IESTKQALPDPAQLVQTAPTPSGSASVAS------TSADSAVPSAQLGGLSIRPRLLGRA 57 +++T P+ Q + PS + +A A PS ++ + + Sbjct: 992 VDTTNITTPNNIQADVPS-VPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 58 STANPSAASSSNAQNVRAALFAAQSVPQGPDPSEVLVKASSRLKRFNDLAQKVVPTEPSD 117 N A+ + AQN A A +V +EV ++ Q E + Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV-----AQSGSETKETQTTETKETAT 1105 Query: 118 IKALE------------ARLRSGTSALESARQALQALAELNIKKRMPVDNIEE 158 ++ E ++ S S + + +Q AE ++ P NI+E Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA-RENDPTVNIKE 1157
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 33.5 bits (76), Expect = 0.001 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 19/96 (19%) Query: 174 GAGVAGLQAIATAKRLGAQVEGFDVRPETREQIASLGARFLDLGVSAAGEGGYARQLTDD 233 G G A + +A+ GA + D PE E++ S S E +A D Sbjct: 19 GIGEAVARTLASQ---GAHIAAVDYNPEKLEKVVS----------SLKAEARHAEAFPAD 65 Query: 234 ER-----AEQQRRLAEHLKGVDVVVCTAAVPGRPAP 264 R E R+ + +D++V A V RP Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGL 100
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 28.0 bits (62), Expect = 0.048 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%) Query: 116 GNRQLMASDRQQRIDAIFAP------YHARITAELDARAKRNQPTIV 156 + S Q+RI+AI +P HA++TA+LD K Sbjct: 235 KFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHY 281
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 31.2 bits (70), Expect = 0.011 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 2 LDANLKTQLTAYLERVTRPIQINASIDDSP-GSREMLELLEELVLLSDTISLD 53 DAN K + +++E I+ N +D + G+ E+ + + + +L S I + Sbjct: 109 FDANGKENIASFMESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYN 161
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 115 bits (290), Expect = 1e-37 Identities = 39/74 (52%), Positives = 55/74 (74%) Query: 16 KSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGI 75 + PLR+ V Q+++ Y L+G D +D+YE+VL E+E PL V+ + GNQ+RAA M+GI Sbjct: 24 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGI 83 Query: 76 HRATLRKKLKEYGM 89 +R TLRKKLK+YGM Sbjct: 84 NRGTLRKKLKKYGM 97
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.5 bits (97), Expect = 3e-07 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 76 STWLGRNGLYLEDLFVRPEARGRGAGLALLRHLAQLAVQRGCGRFEWSVLDWNQPAIDFY 135 S W G +ED+ V + R +G G ALL + A + D N A FY Sbjct: 84 SNWNGY--ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFY 141 Query: 136 RAVG 139 Sbjct: 142 AKHH 145
>PF05043#Transcriptional activator Length = 493 Score = 33.4 bits (76), Expect = 0.002 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCLPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F C+ D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAH 139 + L+ H NTAH Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (284), Expect = 1e-32 Identities = 75/260 (28%), Positives = 113/260 (43%), Gaps = 9/260 (3%) Query: 1 MSNTALRPQRVLIAGGSRGIGLAIAEGFVRNGAQVSICARTAAGLAQAAAALAAHGAPVH 60 M+ + + I G ++GIG A+A GA ++ L + ++L A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 61 TRPCDLADATQIDAYVHAAAQALGGLDVVINNAS----GFGHGNDDASWQAGLDVDLMAA 116 P D+ D+ ID + +G +D+++N A G H D W+A V+ Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 117 VRCNRAALPYLRSSDAAVILNISSINAQRPTPRAIAYSTAKAALNYYTTTLAAELARERI 176 +R+ Y+ + I+ + S A P AY+++KAA +T L ELA I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 177 RVNAISPGSIE--FPDGLWDKRSREEPELY---ARIRDSIPFGGFGQVQHVADAALFLAS 231 R N +SPGS E LW + E + + IP + +ADA LFL S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 232 PQASWITGQVLAVDGGQSLG 251 QA IT L VDGG +LG Sbjct: 241 GQAGHITMHNLCVDGGATLG 260
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 244 bits (625), Expect = 9e-85 Identities = 79/219 (36%), Positives = 129/219 (58%), Gaps = 8/219 (3%) Query: 3 MPDVGSLLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVS 62 M + SL+ ++ LLPF T + K +V ++RNA+G+QQ+P NM LNGVALL+S Sbjct: 1 MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60 Query: 63 CFVMAPVGMEAFKA-AQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQ 121 FVM P+ +A+ +D S + +D + +R +L+K++ FF + Sbjct: 61 MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120 Query: 122 QIWPKDKAAT-------LKSDDLLILAPAFTLGELTEAFRIGFLLYLVFIVIDLVVANAL 174 + ++ T ++ + L PA+ L E+ AF+IGF LYL F+V+DLVV++ L Sbjct: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180 Query: 175 MAMGLSQVTPTNVAIPFKLLLFVAMDGWSMLIHGLVLSY 213 +A+G+ ++P ++ P KL+LFVA+DGW++L GL+L Y Sbjct: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 63.6 bits (155), Expect = 3e-17 Identities = 25/78 (32%), Positives = 44/78 (56%) Query: 4 DDLVRFTSEALLLCLKVSLPVVGVAALTGLLIAFFQAVMSLQDASISFALKLVVVVAAIA 63 DDLV ++AL L L +S VA + GLL+ FQ V LQ+ ++ F +KL+ V + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 VTAPWGASAIMQFGQALM 81 + + W ++ +G+ ++ Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.002 Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 7/70 (10%) Query: 88 RPQYRPPRPNGSFYNGSRPADSRPQQPDQSPATGAQPSRPPPRIGAPPRVIREIQRQTP- 146 +PQ P R N N PQ + A QP++ P Sbjct: 1140 QPQAEPARENDPTVNI-----KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194 Query: 147 -PRNTREQIP 155 N P Sbjct: 1195 VVENPENTTP 1204
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 26.3 bits (58), Expect = 0.037 Identities = 7/27 (25%), Positives = 16/27 (59%) Query: 55 LPAHTRSLLTLAMMVALGHDEEFKLHV 81 +PA R + A++++ +F++HV Sbjct: 138 MPARYRKNVLGAVLLSPSQSSDFEIHV 164
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.1 bits (130), Expect = 5e-10 Identities = 96/379 (25%), Positives = 142/379 (37%), Gaps = 43/379 (11%) Query: 75 VQPVLPEFARAFHVDAATAS-LPLSLATGALALAIFC--TGAVSENLGRRGLMFASIAIA 131 + PVLP R + + LA AL GA+S+ GRR ++ S+A A Sbjct: 24 IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGA 83 Query: 132 AVLNLIAAFLPHWGALVVIRTLSGIALGGVPAVAMVYLGEELPANK-------MGAATGL 184 AV I A P L + R ++GI G AVA Y+ + ++ M A G Sbjct: 84 AVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 185 -YVAGNAFGGMSGRIVMSVLTDHTDWRTALAVLSGFDLLCALAFFWLLPP---SRNFVRR 240 VAG GG+ G + H + A A L+G + L F L R +RR Sbjct: 143 GMVAGPVLGGLMGGF-----SPHAPFFAA-AALNGLNFL--TGCFLLPESHKGERRPLRR 194 Query: 241 HGINLRFHLRAWAGHLRDRNLPFLFALPFLLM---GVFVCLYNYAGFRLGGPEFGLSQSQ 297 +N R WA + + L A+ F++ V L+ G F + Sbjct: 195 EALNPLASFR-WARGM--TVVAALMAVFFIMQLVGQVPAALWVI----FGEDRFHWDATT 247 Query: 298 IGMIFSAYVFGIVSS----SVAGAASDRFGRGPVVTAGIVLCVLGVTLTLAHVLAVVVAG 353 IG+ + FGI+ S + G + R G + G++ G L + Sbjct: 248 IGISLA--AFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFP 305 Query: 354 IVLLTIGFFIAHSAASAWVSRLGGAHRSHAASLYLLAYYAGASTIGALGGWFWQHGGWGA 413 I++L I A A +SR R L A + S +G L + A Sbjct: 306 IMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI----YAA 361 Query: 414 LVGMWLTLLAIAFAAAYIL 432 + W IA AA Y+L Sbjct: 362 SITTWNGWAWIAGAALYLL 380
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.018 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 12/169 (7%) Query: 12 MSVVVAM--SIPVAMAVTPADSATLPAPDTALQVAING---NWRDRVYVQR-DQYRHPGQ 65 +++V AM S+ VA+ +TPA ATL P +A G W + + + Y + Sbjct: 472 ITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVG 531 Query: 66 TLAFFGIKPTQTVIEITPGGGW-YSEILAPYL-REKGKYVAAVVDPASAPEGRSRDYAQR 123 + + I G + + + +L E ++ P G +++ Q+ Sbjct: 532 KILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQ---LPAGATQERTQK 588 Query: 124 ARDDLEKKLQAKPQVYGKPSFVSYVPKSPSFGVDNSADLVLTFRNVHNW 172 D + + S + S S N+ ++ + Sbjct: 589 VLDQVTDYYLKNEKA-NVESVFTVNGFSFSGQAQNAGMAFVSLKPWEER 636
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.0 bits (109), Expect = 2e-07 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 3/148 (2%) Query: 92 VDRQVLGVLAPFLQTQIGWNEIQYGYIVTAFQAAYALGLLCSGAVIDRFGTRLGYALAIG 151 ++ VL V P + ++ TAF +++G G + D+ G + I Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 152 IWSLAAMGHALATSVVGFAI-ARFFLGLGESGNFPAALK-TVAEWFPRRERALATGIFNS 209 I ++ + S I ARF G G + FPA + VA + P+ R A G+ S Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVVARYIPKENRGKAFGLIGS 146 Query: 210 GSNIGAVVAPLLVPLIATAWGWQSAFLF 237 +G V P + +IA W L Sbjct: 147 IVAMGEGVGPAIGGMIAHYIHWSYLLLI 174
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 66.6 bits (162), Expect = 2e-16 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 12/157 (7%) Query: 26 ALPRAETV----DVPRFMGDWYVIAHIPTRPERNAYDAVESYALRPDGRIQTT---FTFR 78 +P + ++ ++G WY +A + ER Y +R DG I ++ Sbjct: 18 GMPESVKPVSDFELNNYLGKWYEVARLDHSFERGLSQVTAEYRVRNDGGISVLNRGYSEE 77 Query: 79 KGSFQAPLKSMHPIGQVAKEGNGALWSMQFLWPFKAEYVIAWLD-AGYTQTIVARSKRDY 137 KG ++ + + G L + F PF YV+ LD Y+ V+ +Y Sbjct: 78 KGEWKEAEGKAYFVNGSTD---GYL-KVSFFGPFYGSYVVFELDRENYSYAFVSGPNTEY 133 Query: 138 VWYMARTPQVSDADYQQAVQRIAAMGYDVSQLRRVPQ 174 +W ++RTP V + ++ G+D ++L V Q Sbjct: 134 LWLLSRTPTVERGILDKFIEMSKERGFDTNRLIYVQQ 170
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 243 bits (622), Expect = 6e-79 Identities = 150/403 (37%), Positives = 222/403 (55%), Gaps = 19/403 (4%) Query: 17 ALIFIFITVLIDVLSFGVIIPVLPGLVRHFTGGDYVQAAVWIGWFGFLFAAIQFVCSPLQ 76 LI I TV +D + G+I+PVLPGL+R + G L+A +QF C+P+ Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSN--DVTAHYGILLALYALMQFACAPVL 63 Query: 77 GALSDRFGRRPVILLSCLG--LDFILMAVAHSLPMLLLARVISGVCSASFSTATAYIADV 134 GALSDRFGRRPV+L+S G +D+ +MA A L +L + R+++G+ A+ + A AYIAD+ Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI 123 Query: 135 TPADKRAGAFGMLGAAFGIGLVAGPLIGGWLGSMGLRWPFWFAAGLALLNVLYGWFVLPE 194 T D+RA FG + A FG G+VAGP++GG +G PF+ AA L LN L G F+LPE Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 195 SLPVERRTARLDWSHANPLGALKLLRRYPQVFGLASAVFLANLAHYVYPSIFLLFAGYQY 254 S ERR R + NPL + + R V L + F+ L V +++++F ++ Sbjct: 184 SHKGERRPLRREAL--NPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 255 HWGPREVSWVLAGVGVCSIIVNVLLVGRLVRWLGERRALMLGLGCGVIGFVIYGLADSGA 314 HW + LA G+ + ++ G + LGERRALMLG+ G+++ A G Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 315 AFLIGVPISALWALAAPSAQALITREVGADAQGRVQGALTGLVSLAGIAGPLLFANVFAW 374 + + A + P+ QA+++R+V + QG++QG+L L SL I GPLLF ++A Sbjct: 302 MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Query: 375 FIGS--------GAPLHLPGAPWLLAGVLLAAGWGMAWKRAGR 409 I + GA L+L P L G+ W A +RA R Sbjct: 362 SITTWNGWAWIAGAALYLLCLPALRRGL-----WSGAGQRADR 399
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 1e-04 Identities = 10/17 (58%), Positives = 11/17 (64%) Query: 7 NDPCPCGRPADYARCCG 23 NDPCPCG Y +C G Sbjct: 882 NDPCPCGSGKKYKQCHG 898
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 39.7 bits (92), Expect = 1e-05 Identities = 41/128 (32%), Positives = 52/128 (40%), Gaps = 22/128 (17%) Query: 132 PPQGSASGGRIKVDFVGDTSQPDQLVPSPTPVPPTPTPTPVQPPPAASPVQSTLVQQAKN 191 P Q A+ GR D G+T+ Q++P P P + QP P SP ++ A N Sbjct: 288 PVQVVATFGR---DSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENP----ANN 340 Query: 192 PVPPQGNTAPGSLAERRQPRRQQRPTPP-QPPAPPAASAQP--RPDTWT--GRPPGMLEE 246 P P N PG+ R P P P A P QP RPD+ RP G + Sbjct: 341 PAP---NENPGT-------RPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPNGRHRK 390 Query: 247 PADGAEDG 254 EDG Sbjct: 391 ERKEGEDG 398
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.3 bits (60), Expect = 0.015 Identities = 8/44 (18%), Positives = 16/44 (36%) Query: 20 PILEQARKRTKPVTVDMYEVWCAVLYLLRTGCPWRALPSDFPKW 63 P+L R + +++ L+L G + P D + Sbjct: 710 PVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPSPEDEEIY 753
>PF05043#Transcriptional activator Length = 493 Score = 35.3 bits (81), Expect = 4e-04 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 14/86 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCVPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F CV D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAHM 140 + L+ H NTAH+ Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAHL 325
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 132 bits (333), Expect = 4e-36 Identities = 80/437 (18%), Positives = 148/437 (33%), Gaps = 75/437 (17%) Query: 47 LAGVLIIALIVLFLATFSTSR---KVQWQGVVVPAGGTVSVIAPSAGSVSKVLVREGEQV 103 L I+ +V+ + G + +G + + V +++V+EGE V Sbjct: 59 LVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESV 118 Query: 104 HAGQAMFMLSE------------SLGNARLEG------------------------GDGA 127 G + L+ SL ARLE Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 128 IPELLDERRQSLKRETIERQRKAELLKNSMLERLGDYDEEIRASSQQEQLQVQIIALAEQ 187 + E R SL +E + + K L++ E + + + + Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKK---RAERLTVLARINRYENLSRVEKS 235 Query: 188 TARTYSDLESSRYVSGIAVREKHL-------DLLGKKQQLVDIRRQIQQLRRERSSLASD 240 +S L + ++ AV E+ +L K QL I +I + E + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 241 MQSQM------AQSKLDSLDLQRKTFELDQQLTENTGTRTVVVRALGKGVVGTINVAA-G 293 ++++ + L L+ E QQ + +RA V + V G Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASV--------IRAPVSVKVQQLKVHTEG 347 Query: 294 QGVGALLSLAVLIPEGRPLEVEMYAPSQAVGLMREGMDVSLRYSAFPYQKFGQQKGRVKA 353 V +L V++PE LEV ++ +G + G + ++ AFPY ++G G+VK Sbjct: 348 GVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKN 407 Query: 354 ISRSTMRVEEVRLPASLMKSGAEPLYRVRIDIGSPTVRVYGREVPLRPGMLVEGSVNLER 413 I+ + + + L + V I I + + +PL GM V + Sbjct: 408 INLDAIEDQRLGLV-----------FNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGM 456 Query: 414 RKLYEWIIDPLFTVTGR 430 R + +++ PL Sbjct: 457 RSVISYLLSPLEESVTE 473
>PF05043#Transcriptional activator Length = 493 Score = 34.5 bits (79), Expect = 8e-04 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 96 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCVPCDPSSLTRWRQRLGEAGM 155 +A ++ L +E VC+ ++ FF E +F CV D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 156 E-------------ELLAHTINTAH 167 + L+ H NTAH Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 28.7 bits (64), Expect = 0.025 Identities = 7/21 (33%), Positives = 12/21 (57%) Query: 100 GGWRQFEQLVADAFRRQGYSV 120 GGW ++ V ++QG+ V Sbjct: 61 GGWATLDKAVGGILQQQGWPV 81
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 243 bits (621), Expect = 1e-81 Identities = 83/249 (33%), Positives = 115/249 (46%), Gaps = 14/249 (5%) Query: 94 FDALYGSTTPQAGANGAPAQPGAAPAYDPWERYNRGMHRFNMAV-DRGVARPLATAYTKV 152 AL TT G + DP E +NR M+ FN V D + RP+A A+ Sbjct: 5 LSALALGTTLLVGCASSGTD--QQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDY 62 Query: 153 VPSPARLGVTNFFDNLGTPLTMVNQLLQGHPVYAVQSLGRFVMNSTLGVAGLFDPASAAG 212 VP PAR G++NF NL P MVN LQG P + RF +N+ LG+ G D A A Sbjct: 63 VPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMAN 122 Query: 213 IPRR---SEDFGQTLGAWGWRNSRYFELPLFGPRTVRDTFGLAGDI---PLSWIRHVDDG 266 + FG TLG +G Y +LP +G T+RD G D LSW+ Sbjct: 123 PKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPVLSWL----TW 178 Query: 267 GTRFALQGLQLVDTRAQLMSLDSLRDQAPDEYALTRDAWMQRRNYQITRDLRSHNEKKNN 326 L+ ++TRAQL+ D L Q+ D Y + R+A+ QR ++ E N Sbjct: 179 PMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPNA 238 Query: 327 E-LPDYLRE 334 + + D L++ Sbjct: 239 QAIQDDLKD 247
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.004 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 67 LADDLRQAWQAEQLRKPLQALLAQDRRGQLLKTLSVWSVAGMRMAPTAKALGIHRNTLSY 126 + A +LA+ +L L+ A LG++RNTL Sbjct: 412 MRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTA---TRGNQIKAADLLGLNRNTLRK 468 Query: 127 RMQRI 131 +++ + Sbjct: 469 KIREL 473
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.1 bits (67), Expect = 0.013 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 207 NERPSTDVIAFRDRLEEATYTARANRGTDAAAAGAPPAPRPQTPPPAQAQQPTTVPPANE 266 N+ D+ +R RL A N A APPAP+P P Q PP Sbjct: 538 NKDGKVDIGTYRYRL-----AANGNGQWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPP 592 Query: 267 ASTVPMQPSATPPAKQGFQPVSEGEI 292 P QP P QP + E+ Sbjct: 593 QPPQPPQPPQRQPEAPAPQPPAGREL 618
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 31.1 bits (70), Expect = 2e-04 Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 1 MGGFSIWHWLIVLVIVLLVFGTKRLTSGAKDLGSAVKEFKK 41 M L+V +I L+V G +RL K + ++ + Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRS 41
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 82.4 bits (203), Expect = 3e-22 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELK 60 MFDIG EL L+ ++ LVVLGP+RLP A + W+R R +V+ EL +EL+ +E + Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 RSLQDVQ-ASLREAEDQLRNKQQQVEQGA 88 SL+ V+ ASL +L+ ++ Q A Sbjct: 61 DSLKKVEKASLTNLTPELKASMDELRQAA 89
>PF05043#Transcriptional activator Length = 493 Score = 34.5 bits (79), Expect = 8e-04 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCVPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F CV D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAH 139 + L+ H NTAH Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 30.1 bits (67), Expect = 0.019 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 117 DEAALSANPFRVFTSLLRLELIEDATLRAQAEQILQQRQIFTAGVLQLIERYEQQGGLDA 176 D ++ R + LLR L AT + +L +L +++ E++GG+D Sbjct: 436 DVRRITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDT----MLVALDKAEREGGVDK 491 Query: 177 DQARQFVAEALETFR 191 DQ + F + L+T+R Sbjct: 492 DQLKSFNSLILKTYR 506
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 732 bits (1890), Expect = 0.0 Identities = 282/1035 (27%), Positives = 483/1035 (46%), Gaps = 28/1035 (2%) Query: 3 ISAPFIKRPIGTSLLAIGLFVIGLMCYLRLGVASLPNIQIPIIFVHATQSGTDASTMAST 62 ++ FI+RPI +LAI L + G + L+L VA P I P + V A G DA T+ T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTAPLERHLGQLPGIDRMRSSSSEN-SSVVVLVFQSSRNIDSAAQDIQTAINASQSDLPS 121 VT +E+++ + + M S+S S + L FQS + D A +Q + + LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 GLGTPMYSKANPNEDPVIAIALTSET--QSADELYNVADSLLAQRLRQITGISLVDIAGA 179 + S + ++ S+ + D++ + S + L ++ G+ V + GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 STPAVRVDVDLRALNALGLTTDNLRNAVRAANVTSPTGFL------SDGNTTMAIIANDS 233 A+R+ +D LN LT ++ N ++ N G L +IIA Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 VSKAADFAQLAIATQSNGRIVRLGDVATVYDGQQDAYQAAWFNGKPAVVMYAFTRAGANI 293 +F ++ + S+G +VRL DVA V G ++ A NGKPA + GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 VETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQAALMISLAMVILTMALFL 353 ++T +KA++ EL+ + G + +D TP ++ S+HEV L ++ +V L M LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 RRLAPTLIAAIAVPLSLAGSALVMYVLGFTLNNLSLLALVIAIGFVVDDAIVVIENVMRH 413 + + TLI IAVP+ L G+ ++ G+++N L++ +V+AIG +VDDAIVV+ENV R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 L-DEGMSRMEAALAGAREIGFTIVSITASLVAVFIPMLFASGMIGAFFREFTVTLVAAIV 472 + ++ + EA +I +V I L AVFIPM F G GA +R+F++T+V+A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 VSMLVSLTLTPALCSRFLSAHAEP--EKPGRLGAWLDRMHERMLRVYTVALDFSLRHALL 530 +S+LV+L LTPALC+ L + E G W + + + YT ++ L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 531 LSLTPLLLIAATIFLVGAVKKGSFPAQDTGLIWGRANSSATVPFADMVSRQRRITDMLMA 590 L L++A + L + P +D G+ A ++TD + Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 591 DPA------VKTVGARLGSSRQGSSASFNIELKKRDE--GRRDTTADVVARLSAKADRYP 642 + G Q + +F + LK +E G ++ V+ R + + Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAF-VSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 643 DLDLRLRAIQDLPSDGGGGTSQGAQYRVSLQGNDLAQLQEWLPKLQAALKKNP-RLRNVG 701 D + G + + G L + +L ++P L +V Sbjct: 659 --DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 702 TDVDTSGLRQNIVIDRAKAARLGVSVGAIDGALYGAFGQRSISTIYSDLNQYSVVVNALP 761 + + + +D+ KA LGVS+ I+ + A G ++ + V A Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 762 SQTATPKALDQIFVPNRAGRMVPITAVATQVPGLAPPQIIHENQYTTMDLSYNLAPGVNT 821 P+ +D+++V + G MVP +A T P++ N +M++ APG ++ Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 822 GEADLIIKSTVDGLRMPDGIRLS-GGDSFNVQLSPNSMGILLLAAVLTVYIVLGMLYESL 880 G+A ++++ ++P GI G S+ +LS N L+ + + V++ L LYES Sbjct: 837 GDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 881 IHPVTILSTLPAAGVGALLALFITNTELSVISMIALVLLIGIVKKNAIMMIDFALVAQRV 940 PV+++ +P VG LLA + N + V M+ L+ IG+ KNAI++++FA Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 941 HGMDARAAAREASIVRFRPIMMTTMVAILAAVPLAVGLGEGAELRRPLGIAMIGGLMFSQ 1000 G A A +R RPI+MT++ IL +PLA+ G G+ + +GI ++GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1001 SLTLLSTPALYVIFS 1015 L + P +V+ Sbjct: 1015 LLAIFFVPVFFVVIR 1029 Score = 106 bits (266), Expect = 3e-25 Identities = 79/506 (15%), Positives = 163/506 (32%), Gaps = 31/506 (6%) Query: 2 NISAPFIKRPIGTSLLAIGLFVIGLMCYLRLGVASLPNIQIPIIFVHA-TQSGTDASTMA 60 N + L+ + ++ +LRL + LP + +G Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 STVT----------APLERHLGQLPGIDRMRSSSSENSSVVVLVFQSSRNIDS-AAQDIQ 109 + + + G + + + V L RN D +A+ + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 110 TAINASQSDLPSGLGTPMYSKANPNEDPVIAIALTSETQSA-----DELYNVADSLLAQR 164 + G P + A E D L + LL Sbjct: 648 HRAKMELGKIRDGFVIPF--NMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 165 LRQITGISLVDIAG-ASTPAVRVDVDLRALNALGLTTDNLRNAVRAANVTSPTGFLSDGN 223 + + V G T +++VD ALG++ ++ + A + D Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 224 TTMAIIA---NDSVSKAADFAQLAIATQSNGRIVRLGDVATVYDGQQDAYQAAWFNGKPA 280 + D +L + + +NG +V T + + + +NG P+ Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRS-ANGEMVPFSAFTTSHWVYG-SPRLERYNGLPS 823 Query: 281 VVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQAALMI 340 + + G + A + L S L G + + R S ++ A + I Sbjct: 824 MEIQGEAAPGTS----SGDAMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPALVAI 878 Query: 341 SLAMVILTMALFLRRLAPTLIAAIAVPLSLAGSALVMYVLGFTLNNLSLLALVIAIGFVV 400 S +V L +A + + + VPL + G L + + ++ L+ IG Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 401 DDAIVVIENVM-RHLDEGMSRMEAALAGAREIGFTIVSITASLVAVFIPMLFASGMIGAF 459 +AI+++E EG +EA L R I+ + + + +P+ ++G Sbjct: 939 KNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 460 FREFTVTLVAAIVVSMLVSLTLTPAL 485 + ++ +V + L+++ P Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVF 1024
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 732 bits (1892), Expect = 0.0 Identities = 298/1072 (27%), Positives = 497/1072 (46%), Gaps = 65/1072 (6%) Query: 4 STIFIRRPIATSLLMAGVLLLGILGYRQLPVSALPEIDAPSLVVTTQYPGANATTMASLV 63 + FIRRPI +L +++ G L QLPV+ P I P++ V+ YPGA+A T+ V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TTPLERQFGQISGLKMMTSDS-SAGLSTIILQFSMERDINIASQDVQAAIRQAT--LPSS 120 T +E+ I L M+S S SAG TI L F D +IA VQ ++ AT LP Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 121 LPYQPVYNRVNPADAAILTLKLTSDS--LPLREVNRYADAILAQRLSQVPGVGLVSIAGN 178 + Q + + + ++ SD+ +++ Y + + LS++ GVG V + G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 179 VRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLN------GKTQSYSIGTNDQ 232 A+RI ++ L+ LT + + L N G L G+ + SI + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 233 LTDAAEYRQTII-SYKDGRPVRLADVANVVDGVENDQLAAWADNKPAVLLEIRRQPSANI 291 + E+ + + DG VRL DVA V G EN + A + KPA L I+ AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 292 VQTVEQIRSILPQLQSVLPADVHLEVLSDRTETIRASVHEVKFTLVLTIALVVAVIFVFL 351 + T + I++ L +LQ P + + D T ++ S+HEV TL I LV V+++FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 352 RRLWATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRY 411 + + AT+IP++AVP+ L GTFA++A G S++ L++ +V+A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 412 IEQGKSGP-EAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVV 470 + + K P EA E QI ++ + + L AVF+P+ G TG ++ +F+ + A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 471 TSMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKRNLWTRTVGTYERSLDWVLAHQ 530 S+LV+L LTP +CA LLKP + E ++ + +V Y S+ +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHE--NKGGFFGWFNTTFDHSVNHYTNSVGKILGST 537 Query: 531 PLTLAVAIGAVALTVVLYVAIPKGLLPEQDTGLITGVVQADQNVAFPQMEQRTQAVAAAL 590 L + VA VVL++ +P LPE+D G+ ++Q + ++ V Sbjct: 538 GRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 591 QKDPA--VTGVAAFIGAGTMNPTLNQGQLSIVLKTRSDRDG----LDEVLPRLQKAVAGI 644 K+ V V G N G + LK +R+G + V+ R + + I Sbjct: 598 LKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 645 PGVALFLKPVQDV-TLDTRVAATEYQYSISDVDSSELATWAGRMAEAMRKLP-ELADVDN 702 + + + L T + + L ++ + P L V Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 703 NLANQGRALELSIDRDKASMLGVPMQTIDDTLYDAFGQRQISTIFTELNQYRVVLDVAPE 762 N +L +D++KA LGV + I+ T+ A G ++ ++ + + Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 763 FRSSTALMNQLAVASNGSGALTGTNATSFGQVTSSNSSTATGVGAQNTGIVVGAGSIIPL 822 FR +++L V S G ++P Sbjct: 778 FRMLPEDVDKLYVRSA-------------------------------------NGEMVPF 800 Query: 823 AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKARQELNIPTQVHAQF 882 +A + + LP++ I APG S A+A +E +L P + + Sbjct: 801 SAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKL--PAGIGYDW 858 Query: 883 VGKAAEFTGSQTDIIWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 942 G + + S L+ S VV+++ L LYES+ P++++ +P VG LLA + Sbjct: 859 TGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF 918 Query: 943 GLSLSVDGIVGIVLLIGIVKKNAIMMIDFAIDA-RREGANAHDAIRRACLLRFRPIMMTT 1001 V +VG++ IG+ KNAI++++FA D +EG +A A +R RPI+MT+ Sbjct: 919 NQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTS 978 Query: 1002 AAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053 A +LG LPLA+ G GS + +GI ++GG++ + L+ ++ PV ++ + R Sbjct: 979 LAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030 Score = 75.3 bits (185), Expect = 9e-16 Identities = 76/460 (16%), Positives = 160/460 (34%), Gaps = 52/460 (11%) Query: 611 TLNQGQLSIVLKTRSDRD---GLDEVLPRLQKAVAGIPGVALFLKPVQDVTLDTRVAATE 667 + + G ++I L +S D +V +LQ A +P + + + + Sbjct: 82 SDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAG 141 Query: 668 YQYSISDVDSSELATWAGR-MAEAMRKLPELADVDNNLANQGRALELSIDRDKASMLGVP 726 + +++ + + + + +L + DV L A+ + +D D Sbjct: 142 FVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDV--QLFGAQYAMRIWLDADL------- 192 Query: 727 MQTIDDTLYDAFGQRQISTIFTELNQYRVVL-DVAPEFRSSTALMNQLAVASNGS-GALT 784 LN+Y++ DV L Q + G G Sbjct: 193 -----------------------LNKYKLTPVDV------INQLKVQNDQIAAGQLGGTP 223 Query: 785 GTNATSFGQVTSSNSSTATGVGAQNTGIVVGA-GSIIPLAALAEAKVT--NTPLVVSHQQ 841 + + + V + GS++ L +A ++ N ++ Sbjct: 224 ALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING 283 Query: 842 QLPAVTISFNLAPGHSLSQAVAAIEKARQELN--IPTQVHAQFVGKAAEF-TGSQTDIIW 898 + PA + LA G + AI+ EL P + + F S +++ Sbjct: 284 K-PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 342 Query: 899 LLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMCGLSLSVDGIVGIVLLI 958 L +I+++++V+ + ++ L +P +G L G S++ + G+VL I Sbjct: 343 TLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 959 GIVKKNAIMMIDFAIDARRE-GANAHDAIRRACLLRFRPIMMTTAAAMLGALPLALGTGI 1017 G++ +AI++++ E +A ++ ++ +P+A G Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 1018 GSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMERGGER 1057 + R I IV + LS LV L TP + + + Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSA 502
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 6e-09 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 22/149 (14%) Query: 64 ASALGTVTAL-NTVTVSPQVSGQLMSLNFKEGQEVKKGDLLAQIDPRT-------LQASY 115 A+A G +T + + P + + + KEG+ V+KGD+L ++ Q+S Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143 Query: 116 DQALAAKRQNQALLA---TSRVNYQRSNDPAYKQYVS-----------RTDLDTQRNQVA 161 QA + + Q L +++ + D Y Q VS + T +NQ Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY 203 Query: 162 QYEAAVSANDAQMRSAQVQLQFTRITAPI 190 Q E + A+ + ++ + + Sbjct: 204 QKELNLDKKRAERLTVLARINRYENLSRV 232 Score = 37.1 bits (86), Expect = 1e-04 Identities = 23/178 (12%), Positives = 63/178 (35%), Gaps = 29/178 (16%) Query: 93 EGQEVKKGDLLAQIDPRTLQASYDQ-------ALAAKR----------QNQALLATSRVN 135 + + ++ +LA+I+ + ++ +L K+ +N+ + A + + Sbjct: 210 DKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELR 269 Query: 136 YQRSNDPAYKQYVSRTDLD-TQRNQVAQYEAAVSANDAQMRSAQV---------QLQFTR 185 +S + + + Q+ + E + + Q + Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASV 329 Query: 186 ITAPIDGIAGIRGV-DVGNIVSSTSTLVTLT-QIRPIYVSFNLPERELQAVRAGQAAT 241 I AP+ V G +V++ TL+ + + + V+ + +++ + GQ A Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAI 387
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 359 bits (924), Expect = e-123 Identities = 146/470 (31%), Positives = 226/470 (48%), Gaps = 49/470 (10%) Query: 7 MYRLSCAIIDDDVEFCDQVVELATDSGFRAKGIHTLGEASRWLDSNFPDLLVVDVGLPDG 66 M + + DDD + + + +G+ + RW+ + DL+V DV +PD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 67 SGFDLIERL-DPDHTPQIVVVSGDYARETQGRAQQFGVSEFLTKPFAPER---------- 115 + FDL+ R+ ++V+S T +A + G ++L KPF Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 116 -LERVLGGLREAQQGNLGIVGNSDSIAMLRKEIVRVAPTDLNVLVTGETGTGKDLVARAI 174 +R L + Q + +VG S ++ + + + R+ TDL +++TGE+GTGK+LVARA+ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 175 HRVSGRSGR-FVPVNCGAIPEELLASQLFGHERGSFTGADRRHAGFLEQAAGGTLFLDEI 233 H R FV +N AIP +L+ S+LFGHE+G+FTGA R G EQA GGTLFLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 234 GEMPKRLQVYLLRAIESRSFMRVGGNEEIALDARVVAATHQHVQRE--QAVLREDLFYRL 291 G+MP Q LLR ++ + VGG I D R+VAAT++ +++ Q + REDL+YRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 292 NEYPLQVPPLRERRGDARLLGLRVIDELNVKYGKRKLPTKALLRYLACHAWPGNVRELRS 351 N PL++PPLR+R D L + + + K + L + H WPGNVREL + Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 352 FIHYLYLRSDGDLLSAPDVEQAVPQ----------------------------------A 377 + L D+++ +E + Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 378 DEDGLLIPAGWTMRQAEDAMIESALARTRFNKKAAARELGISVRTLHNRL 427 D + + E +I +AL TR N+ AA LG++ TL ++ Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 26.1 bits (57), Expect = 0.013 Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 20 NETSKPLETLRTAHQSAVELLNQLGEAERALQQAD 54 ++ +PL R + +LLN AE L Q + Sbjct: 125 SDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYE 159
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 3e-05 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 6 LTGRRILVVEDDFLLAESLNDLLVEAGVRVLGPVGNVPDALSLVASGQAIDGALLDVNVR 65 +TG ILV +DD + LN L AG V N +A+G D + DV + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGD-GDLVVTDVVMP 58 Query: 66 GHAVFPVADALMER--GVPFSFCSGY 89 F + + + +P S Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQ 84
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.4 bits (81), Expect = 0.001 Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 2/113 (1%) Query: 630 QEVEARELMELPAPRDHEHDDSRVHV--LESELRITRERLQSMIEEIESTNEQLKSSNEE 687 E M + LE+E + Q + +S L +S E Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREA 324 Query: 688 LQSANEDLETSKEELQSVNEEVTTVNGELAHRVQELAHANSDLKNLLESTQIA 740 + + + +E+ + ++ +L + ++ + L E +I+ Sbjct: 325 KKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377 Score = 30.4 bits (68), Expect = 0.049 Identities = 11/85 (12%), Positives = 34/85 (40%) Query: 656 LESELRITRERLQSMIEEIESTNEQLKSSNEELQSANEDLETSKEELQSVNEEVTTVNGE 715 LE+ + L+ + + + ++K+ E + + + + Q +N ++ + Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 716 LAHRVQELAHANSDLKNLLESTQIA 740 L + ++ + L E +I+ Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKIS 342
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 73.4 bits (180), Expect = 1e-17 Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 1/241 (0%) Query: 7 AAIYRFEMARAFRTLTQSIASPVLSTSLYFVVFGAAIGARMGDIDGISYGAFIIPGLVML 66 A++R + S+ + +Y GA +G +G + G+SY AF+ G+V Sbjct: 17 IAVWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVAT 76 Query: 67 SLLNESISNASFGIYMPRWA-GTIYEVLSAPVAWWEIVIGYVGAAATKSVMLGLLILLTA 125 S + + + + T +L + +IV+G + AATK+ + G I + A Sbjct: 77 SAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVA 136 Query: 126 RLFVPYQIAHPVWMLGFLVLTALTFSLFGFIIGIWADGFEKLQVIPLMVVTPLTFLGGSF 185 Q ++ L + LT L F+ G ++ A ++ +V+TP+ FL G+ Sbjct: 137 AALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAV 196 Query: 186 YSINMLPPLWQKVTLFNPVVYLISGFRWSFYGKADVHIAVSTGMTFLFLVVCLGVVAAIF 245 + ++ LP ++Q F P+ + I R G V + G +++V+ + A+ Sbjct: 197 FPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALL 256 Query: 246 R 246 R Sbjct: 257 R 257
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 194 bits (495), Expect = 7e-59 Identities = 109/367 (29%), Positives = 150/367 (40%), Gaps = 68/367 (18%) Query: 175 YQWHMQDSAGGIRAPKAWETSTGGGVVVAVIDTGILPDHPDLKNNDHILQGYDFITNAIV 234 + I+AP W + G GV VAV+DTG DHPDLK I+ G +F Sbjct: 18 QVNEIPRGVEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDLKAR--IIGGRNF------ 69 Query: 235 SRRATDDRVPGALDYGDWIDDDNTCLQRARASSWHGTHTTGTIGELTNNGIGGVGAAHDA 294 DDD + + + HGTH GTI T N G VG A +A Sbjct: 70 ------------------TDDDEGDPEIFKDYNGHGTHVAGTIA-ATENENGVVGVAPEA 110 Query: 295 QILPIRALGQCG-GMSSDIADAIVWASGGHVDGVPDNTHPAEVISMSLGGFGSCDSNTQQ 353 +L I+ L + G G I I +A VD +ISMSLGG + Sbjct: 111 DLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVD----------IISMSLGGPEDVPE-LHE 159 Query: 354 AINTAVANGTTVVVAAGNDGIDAAE----SSPASCSNVITVGATRITGGIAFYSNFGSVV 409 A+ AVA+ V+ AAGN+G P + VI+VGA + +SN + V Sbjct: 160 AVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNNEV 219 Query: 410 DLAGPGGGQDQDTGHGGWDGLVLSTGYSGKTTPTSGQYKYLGYAGTSMASPHVAAVAALV 469 DL PG +LST G KY ++GTSMA+PHVA AL+ Sbjct: 220 DLVAPGED-------------ILSTVPGG---------KYATFSGTSMATPHVAGALALI 257 Query: 470 QSALASTGKTPLNPSQLQAVLKQTARAFPVPPPTATPIGTGIVDATAAMDYVRTNCSGSS 529 + ++ + L +L A L + P G G++ TA + R + Sbjct: 258 KQLANASFERDLTEPELYAQLIKRTIPLGNSPKME---GNGLLYLTAVEELSRIFDTQRV 314 Query: 530 CKPVSTA 536 +STA Sbjct: 315 AGILSTA 321
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 54.9 bits (131), Expect = 1e-09 Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 5/140 (3%) Query: 736 VAATSTATGSTAVANDVTGTAIGGSAYAHGPNDTAIGSNARVNADGSTAVGANTQIAAVA 795 + AT+ A AVA A G ++ A GP A+G +A STA I A A Sbjct: 75 IGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARA 134 Query: 796 TNA---VAMGEGAQVSAASATAIGQGARATAQG--AVAVGQGAVADRANTVSVGSVGAER 850 + + VA+G ++ A ++ AIG + A ++A+G + DR N+VS+G R Sbjct: 135 STSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNR 194 Query: 851 QITNVAAGRSDTDAANVAQV 870 Q+T++AAG DTDA NVAQ+ Sbjct: 195 QLTHLAAGTKDTDAVNVAQL 214 Score = 39.1 bits (90), Expect = 7e-05 Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 23/254 (9%) Query: 312 SNYAIALGYNANVFPNLPGNTDSVAIGHSAGSFAPNTVSLGAYALASDQDGIAVGHNSWA 371 ++ A+ L Y G ++ A G + + + A+A IA G NS A Sbjct: 43 ADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVA 102 Query: 372 LRANSVVLGSGAISSWFNPNSTALGAATRTDGVDATSIGYGAKVGSWVDDAWNRAPVSAV 431 + S LG A+ + + + DGV + + G V ++V Sbjct: 103 IGPLSKALGDSAV-------TYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSV 155 Query: 432 ALGAFSH--ATRNYSVAVGDVA------------SGLTRQITSVAAGTEATDAVNKGQLD 477 A+G SH A YS+A+GD + L RQ+T +AAGT+ TDAVN QL Sbjct: 156 AIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLK 215 Query: 478 ALAADVQATSGVLQANGEGTASATGEH--STAAGAGASASGARSAAVAAGSRASAAGASA 535 Q + A A+A ++ S+ G + + ++SA +R A S Sbjct: 216 KEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSK 275 Query: 536 LGVDSSANGVNSTA 549 ++ + NS A Sbjct: 276 DVLNMAKAHSNSVA 289 Score = 39.1 bits (90), Expect = 8e-05 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 4/105 (3%) Query: 491 QANGEGTASATGEHSTAAGAGASASGARSAAVAAGSRASAAGASALGVDSSANGVNSTAM 550 G ASA G HS A GA A A+ + AV AGS A+ + A+G S A G ++ Sbjct: 58 PGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTY 117 Query: 551 GYNSFVRQSGVNGVALGANAGASGADSVALGSGSRTYEANTVSVG 595 G S ++ +GVA+GA A S VA+G S+ N+V++G Sbjct: 118 GAASTAQK---DGVAIGARASTSDT-GVAVGFNSKADAKNSVAIG 158 Score = 38.3 bits (88), Expect = 1e-04 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 18/175 (10%) Query: 192 ALGGGAKATAALATAVGSGSEARNVQSTALGYRARAFEDGATAVGGLSVASGYLSTANGY 251 ALG + A G + A+ + S A+G A A + A AVG S+A+G S A G Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP 105 Query: 252 FARATGTSSVALGNTALASGIDSVAIGGVSTAAAAAGNSSSLTAATGVGSVALGAGAVTQ 311 ++A G S+V G + A D VAIG A+T VA+G + Sbjct: 106 LSKALGDSAVTYGAASTAQK-DGVAIGA--------------RASTSDTGVAVGFNSKAD 150 Query: 312 SNYAIALGYNANVFPNLPGNTDSVAIGHSAGSFAPNTVSLGAYALASDQDGIAVG 366 + ++A+G++++V N + S+AIG + + N+VS+G +L +A G Sbjct: 151 AKNSVAIGHSSHVAAN---HGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202 Score = 32.6 bits (73), Expect = 0.009 Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 12/178 (6%) Query: 94 LQIVGGSDPAEDVGAFAAEPYAVAIGEASNALGEGGIALGAGATVTAKHAIATGYAAAAS 153 +QI +DPA + P A G ++A G IA+GA A A+A G + A+ Sbjct: 37 VQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIAT 96 Query: 154 GESAVAIGGTTEIFDYNDAGEIIGSHQDSTEASQFGAVALGGGAKATAALATAVGSGSEA 213 G ++VAIG ++ D+ G + +Q VA+G A +T+ AVG S+A Sbjct: 97 GVNSVAIGPLSKAL--GDSAVTYG----AASTAQKDGVAIGARA-STSDTGVAVGFNSKA 149 Query: 214 RNVQSTALGYRARAFEDGATAVGGLSVASGYLSTANGYFARATGTSSVALGNTALASG 271 S A+G+ + + G S+A G S + + + G S+ T LA+G Sbjct: 150 DAKNSVAIGHSSHVAAN-----HGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 4e-13 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 15 SVAVLEDDALLREDILIPGLREFGFRVSGAGTAGELYRLMLQQAFDLVVLDLGLPDESGL 74 ++ V +DDA +R L L G+ V A L+R + DLVV D+ +PDE+ Sbjct: 5 TILVADDDAAIRTV-LNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 75 SVVTYLRSLFAGLGIVVLTGNCGRSDHARALHGGADAFLRKPTD-PEILALTLRNLAQRL 133 ++ ++ L ++V++ +A GA +L KP D E++ + R LA+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 134 R 134 R Sbjct: 124 R 124
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.010 Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 126 QNANADEDGDADAEDAADAAGTDADAEDAAAENATASADDSAADAEASDDAEGDSAGKKA 185 Q A D + A DAA +DADA ++A + +D AE + + E + K Sbjct: 398 QRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGF 457 Query: 186 K 186 K Sbjct: 458 K 458
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 39.1 bits (91), Expect = 2e-05 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 17/116 (14%) Query: 174 FDIGRDQLKPYTVAILHELSNFINQV-PNHISIT--GHTDTTAYSSDAGYTNWELSADRA 230 F+ + LKP A L +L + ++ + P S+ G+TD SDA N LS RA Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIG--SDA--YNQGLSERRA 278 Query: 231 NAARRALVGGGMSDAKVTRV-VGLSSSVLFDKTDPQNP---------INRRISIVV 276 + L+ G+ K++ +G S+ V + D +RR+ I V Sbjct: 279 QSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 27.0 bits (59), Expect = 0.044 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 3/68 (4%) Query: 13 LATALAGCSAGSPPPTTEAAKPAGTEPATANSADTRP-PAVGTDASVAGPLPRPGRT--P 69 LA AG ++ S P + A A A T+P LP G T P Sbjct: 455 LAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANP 514 Query: 70 AHTAPAAA 77 TA A Sbjct: 515 FFTAAALT 522
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 149 bits (378), Expect = 3e-44 Identities = 80/367 (21%), Positives = 131/367 (35%), Gaps = 62/367 (16%) Query: 5 VIVTGGAGFIGCALSGQLKAFGLPVVAIDNLHP--QIHAESKRPEAL-DEAAHLHIGDVT 61 +VTG AGFIG +S +L G VV IDNL+ + + R E L H D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 62 EENTWGQVLENWQPTVVVHLAAETGTGQSLTEATRHAHVNVVGTTAMLDAFSARKLVPEH 121 + + + V SL +A N+ G +L+ R +H Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEG--CRHNKIQH 120 Query: 122 VLLASSRAVYGEGAWLDANGTTFYPPPRSHEVLARSQWNPLSPSGGGAASPLSHRADTVF 181 +L ASS +VYG P S + D Sbjct: 121 LLYASSSSVYGLNR----------KMPFSTD----------------------DSVDH-- 146 Query: 182 PNPTSVYGATKLAQEHILAAWCGAMQVPLSVFRLQNVYGPGQSPFNSYTGIITLFHRMAR 241 P S+Y ATK A E + + +P + R VYGP P + F + Sbjct: 147 --PVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMAL----FKFTKAML 200 Query: 242 KAQTLEIYEDGEIGRDFVFIDDVVVALMAGLRQPP-----------------AGLRTLDV 284 + +++++Y G++ RDF +IDD+ A++ P A R ++ Sbjct: 201 EGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNI 260 Query: 285 GSGVVTTIAEAAKSIAAMHGAPDPQISGKFRDGDVRWAVADGAPLEQSLGVQARINFQEG 344 G+ + + +++ G + + GDV AD L + +G ++G Sbjct: 261 GNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDG 320 Query: 345 ANRVGEW 351 W Sbjct: 321 VKNFVNW 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 1e-18 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 2 RLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGLR 61 +L+ +D+A + + + + R+G+ V ++ + DLVV D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREF-EARCRVLLRRNR 120 +L +++ PVL+++A++ ++A + GA DYL KPFD E R L R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GQA 123 + Sbjct: 125 RPS 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.8 bits (150), Expect = 3e-12 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 364 MADLTILVADDHPLFRAAVLHVLQQTLPQAN--VVEASSAATLSAMLRSHPQAELVLLDL 421 M TILVADD R VL Q L +A V S+AATL + + +LV+ D+ Sbjct: 1 MTGATILVADDDAAIRT----VLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDV 55 Query: 422 AMPGARGFSALLHVRGEHPDIPVVVISSNDHPRVIRRAQQFGAAGFIPKS 471 MP F L ++ PD+PV+V+S+ + +A + GA ++PK Sbjct: 56 VMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.4 bits (79), Expect = 8e-04 Identities = 71/369 (19%), Positives = 127/369 (34%), Gaps = 62/369 (16%) Query: 76 LMRPLGAVILGAYIDDVGRRKGLIVTL-------AIMASGTVLIVLVPGYASIGLWAPAL 128 LM+ A +LGA D GRR L+V+L AIMA+ L VL Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVL-------------- 99 Query: 129 VLLGRLLQGFSAGAEMGGVSVYLAEMATPGRRGFYASWQSASQQLAIVAAAAIGFALNQL 188 +GR++ G + GA Y+A++ R + + SA +VA +G Sbjct: 100 -YIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---- 153 Query: 189 MAPQDLAQWGWRIPFGICCVIIPFIFLLRRSLEETAEFAQRRQPVTMKQVMRGLANNASI 248 + + PF + FL L + +RR +++ + Sbjct: 154 -----MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERR---PLRREALNPLASFRW 205 Query: 249 VIAGGLMVALTTTAFYLI-------TVYAPTFGKTVLKLSTGDALIVTLLVGVSN-FMWL 300 ++ AL F + ++ FG+ I G+ + Sbjct: 206 ARGMTVVAALMAVFFIMQLVGQVPAALWV-IFGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 301 PIGGTLSDRFGRKPLLVTMSVMCILTAYPVLAFLAAAPSFAHMLQALLWLSFIYGLYNGA 360 I G ++ R G + L + ++ T Y +LAF + + G Sbjct: 265 MITGPVAARLGERRAL-MLGMIADGTGYILLAFATRGWMA--------FPIMVLLASGGI 315 Query: 361 MIPALTEQMPAHV------RVAGFSLAYSLATAVFGGFTPVISTWLIHVTGDKAAPGYWL 414 +PAL + V ++ G A + T++ G P++ T + + W+ Sbjct: 316 GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG---PLLFTAIYAASITTWNGWAWI 372 Query: 415 IFASVCALA 423 A++ L Sbjct: 373 AGAALYLLC 381 Score = 30.6 bits (69), Expect = 0.015 Identities = 13/27 (48%), Positives = 18/27 (66%) Query: 291 LVGVSNFMWLPIGGTLSDRFGRKPLLV 317 L + F P+ G LSDRFGR+P+L+ Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLL 77
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 4e-10 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 3/120 (2%) Query: 762 RVWCVDDEPLVCEATRTLLERWECRVDFAGGPDEALSAANAEEVPELLLLDVRMGAHYGP 821 + DD+ + L R V A + +L++ DV M Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 822 MLLPQLVERWRREPRLILVTAEPDPALREHALDLG-WGLLSKPVRPPALRALVTQMLMRR 880 LLP++ + P ++++A+ A + G + L KP L ++ + L Sbjct: 64 DLLPRIKKARPDLPV-LVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 33.6 bits (77), Expect = 9e-04 Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 45/210 (21%) Query: 153 RQSALELGGLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGR 212 R+SA G +++ E A A + + LPV+ +VDIG T ++V+ Sbjct: 127 RESAQGAGAREVFLIE-EPMA-----AAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNG 180 Query: 213 SLYSREQVFGGKQLTDEVM----RRYGL-----TYEEA----GLAKRQG----------- 248 +YS GG + + ++ R YG T E G A Sbjct: 181 VVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRN 240 Query: 249 ---GLPESYEV---EVLEPFKE---ATVQQISRLLQFF---YAGSEFNRVDCIVLAGGCA 296 G+P + + E+LE +E V + L+ A R +VL GG A Sbjct: 241 LAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISER--GMVLTGGGA 298 Query: 297 ALACLPEMVEEQLGVTTVVA-NPLAQMTLG 325 L L ++ E+ G+ VVA +PL + G Sbjct: 299 LLRNLDRLLMEETGIPVVVAEDPLTCVARG 328
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 29.0 bits (64), Expect = 0.019 Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 4/98 (4%) Query: 166 AGQPGASSMDTKTLPYVFTLKVKLANPNEADKNGTAPGAVDPAAPGTAAPG---AAPAGA 222 P K + +L D GT + P + + P+ Sbjct: 148 TDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPV 207 Query: 223 TPAA-PAAAPAPATPPAAAPAPTQAAPAPANRPQQGAS 259 T AA P P P AP +AP ++ QQ S Sbjct: 208 TAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLS 245
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 222 bits (568), Expect = 6e-66 Identities = 99/436 (22%), Positives = 169/436 (38%), Gaps = 49/436 (11%) Query: 230 VPWDQALDIVLRAKGLDKRRDGGVVWVAPQPELAKFEQDKEDARIAIENREDLITDYVQ- 288 + W A D+V L+K + + + E+ N I ++ Sbjct: 199 LSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQ 258 Query: 289 ---------------INYHNAAVIFKALTEAKGIGGGGGSGAGQGGQGGAGQQDNGFLSP 333 + Y A+ + + LT G + + D + Sbjct: 259 LDRQQATQGNTKVIYLKYAKASDLVEVLT-----GISSTMQSEKQAAKPVAALDKNII-- 311 Query: 334 RGRLVADERTNTLMISDIPKKVAQMRELISHIDRPVDQVLIESRIVIATDTFARDLGARF 393 + A +TN L+++ P + + +I+ +D QVL+E+ I D +LG ++ Sbjct: 312 ---IKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQW 368 Query: 394 GITGATGRGILSGSLDSNTNYLNTSAKRASEIANGGTSTTLPAHLFPSGLNVNLGAGGGF 453 A + L +T A +G S++L + L G GF Sbjct: 369 ANKNAGMTQFTNSGLPISTAI----AGANQYNKDGTVSSSLASALSSFN-----GIAAGF 419 Query: 454 TTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGEVVSNPRIVTANQREGVIKQGREIGYVT 513 N + L+A+ + ++++ P IVT + E G+E+ +T Sbjct: 420 --------------YQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLT 465 Query: 514 ISGGGAGGGSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVARLIDLPLYGTVPE 573 S +G V+ K V ++LKV P I + V L + + VA Sbjct: 466 GSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGAT 525 Query: 574 INRREINTAVLVGDGETVVIGGVYEFTDRESVAKVPFLGDIPFLGNLFKKRGRSKEKAEL 633 N R +N AVLVG GETVV+GG+ + + ++ KVP LGDIP +G LF+ + K L Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 634 LVFVTPKVLRVASATR 649 ++F+ P V+R R Sbjct: 586 MLFIRPTVIRDRDEYR 601 Score = 50.7 bits (121), Expect = 1e-08 Identities = 31/209 (14%), Positives = 75/209 (35%), Gaps = 30/209 (14%) Query: 175 AAAQIAARGYSGRPVTFNFQDVPVRTVLQLIAEESNLNIVASDTVQGNVTLR----LMNV 230 A + R + + +F+ ++ + +++ N ++ +V+G +T+R L Sbjct: 16 IFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEE 75 Query: 231 PWDQALDIVLRAKGLDK-RRDGGVVWVAPQPELAKFEQDKEDARIAIENREDLITDYVQI 289 + Q VL G + GV+ V + AK + A ++++T V + Sbjct: 76 QYYQFFLSVLDVYGFAVINMNNGVLKVVRSKD-AKTAAVPVASDAAPGIGDEVVTRVVPL 134 Query: 290 NYHNAAVIFKALTEAKGIGGGGGSGAGQGGQGGAGQQDNGFLSPRGRLVADERTNTLMIS 349 A + L + G G +V E +N L+++ Sbjct: 135 TNVAARDLAPLLRQLNDNAGV------------------------GSVVHYEPSNVLLMT 170 Query: 350 DIPKKVAQMRELISHIDRPVDQVLIESRI 378 + ++ ++ +D D+ ++ + Sbjct: 171 GRAAVIKRLLTIVERVDNAGDRSVVTVPL 199
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 7e-04 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 24/158 (15%) Query: 35 IVGQS----ALVERLLIALLADGHLLVEGAPGLAKTT---AIRALASRLEADFARVQ--- 84 +VG+S + L + D L++ G G K A+ R F + Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198 Query: 85 FTPDLLPADLTG------TEIWRPQDSRFEFMPGPIFHPILLADEINRAPAKVQSALLEA 138 DL+ ++L G T RFE G L DEI P Q+ LL Sbjct: 199 IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGT----LFLDEIGDMPMDAQTRLLRV 254 Query: 139 MGERQVT-VGRHTYALPQLFLVMATQNPIEQ---EGTF 172 + + + T VG T + +V AT ++Q +G F Sbjct: 255 LQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLF 292
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 61.2 bits (148), Expect = 4e-13 Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 2/188 (1%) Query: 3 LHGKCIILTGATGGIGSALCAGLVEAGATVVAVGRTEETLRRLSAAHAPGGVVP--VVAD 60 + GK +TGA GIG A+ L GA + AV E L ++ ++ AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 LASESGRAVLLARAHEMRPAPSVLVLAHAQSHFGLLQDQDPAALTALVHLNLTVPMLLVQ 120 + + + AR +LV GL+ A +N T + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 ALLPAFVRQPDAAMVAVGSTFGSIGFAGFAGYSASKFGLRGLFEALAREHAGTSVRFQYL 180 ++ + + ++V VGS + A Y++SK + L E A ++R + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 SPRATATA 188 SP +T T Sbjct: 186 SPGSTETD 193
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 2e-20 Identities = 36/143 (25%), Positives = 58/143 (40%) Query: 2 RILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGIE 61 IL+ +DD ++ + AL RA Y V + + + DLV+ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VIRTARARAVDTPILVLSARERAADRALGLDVGADDYLGKPFDTNELLARTRALLRRSAG 121 ++ + D P+LV+SA+ + GA DYL KPFD EL+ L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 RAQPALQAGALRLDPAGMSVRWH 144 R + G S Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQ 147
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 5e-04 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 21/104 (20%) Query: 348 SLLLRNLLENAVRY----TPAGGRIRV-GTHNAPQPTLVVEDSGPGIPEAARARVFHRFH 402 +L++ L+EN +++ P GG+I + GT + TL VE++G + + Sbjct: 257 PMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK-------- 308 Query: 403 RELGTGVEGSGLGLSIVHD-IAVAHAARVQLDESPALGGLRVRV 445 E +G GL V + + + + Q+ S G + V Sbjct: 309 -------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 66.9 bits (163), Expect = 8e-15 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 5/79 (6%) Query: 309 PPKYPADAIAAGLAGFVELQVAVSPNGTPDHIAIVRSTPAGVFDRAVLDAARHWRFAPAV 368 P+YPA A A + G V+++ V+P+G D++ I+ + PA +F+R V +A R WR+ P Sbjct: 164 QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGK 223 Query: 369 VDGEAVASDVRVPVKFELD 387 + V + F+++ Sbjct: 224 PGSG-----IVVNILFKIN 237
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.023 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 25 VVALVGPSGAGKTTVLNAIAGL 46 V L G G GK+T++N + GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL 619
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 60.6 bits (147), Expect = 1e-11 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 19/156 (12%) Query: 61 VDDGKSTLIGRLLYDSKRLFDDQLAALESDSRRHGTQGESIDYALLMDGLAAEREQGITI 120 VD GK+TL LLY+S + +L +++ + R D ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAI--TELGSVDKGTTR-------------TDNTLLERQRGITI 56 Query: 121 DVAYRYFDTDRRKFIVADCPGHEQYTRNMATGASTADVAVVLVDARKGLLAQTRRHSYIV 180 F + K + D PGH + + S D A++L+ A+ G+ AQTR + + Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 181 SLLGIGHVVLAVNKMDL--VDYDAQVFADIAQRYGA 214 +GI + +NK+D +D V+ DI ++ A Sbjct: 117 RKMGIPTIFF-INKIDQNGIDLS-TVYQDIKEKLSA 150
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.4 bits (92), Expect = 2e-05 Identities = 34/181 (18%), Positives = 70/181 (38%), Gaps = 24/181 (13%) Query: 99 QAALTAAQATFEETDQLYRRQLSLVGQQLVAKSTVDTQRALRDAAQARVQQMRAEITDRE 158 ++ + +A+ ++ QL++ ++ +Q + T A+ +Q + I Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLEL----AKNEERQQASVI---- 330 Query: 159 VRAPFSG-VLGMRQISPGALITS-STVIATLDDVARMYVDFKVPESQFGLVQVGNAVSGS 216 RAP S V ++ + G ++T+ T++ + + + V V G + VG Sbjct: 331 -RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 217 AAAYPGAQF---EGEVVTI--DSRIDETTRSVT-VRADFP-------NDDRRLRPGMLLD 263 A+P ++ G+V I D+ D+ V V N + L GM + Sbjct: 390 VEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVT 449 Query: 264 V 264 Sbjct: 450 A 450 Score = 35.2 bits (81), Expect = 4e-04 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 6/88 (6%) Query: 72 VVEQVYFDSGDEVKAGQLLLRLRGNSQQAALTAAQATF------EETDQLYRRQLSLVGQ 125 +V+++ G+ V+ G +LL+L +A Q++ + Q+ R + L Sbjct: 106 IVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKL 165 Query: 126 QLVAKSTVDTQRALRDAAQARVQQMRAE 153 + + + + R+ + E Sbjct: 166 PELKLPDEPYFQNVSEEEVLRLTSLIKE 193
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 841 bits (2173), Expect = 0.0 Identities = 337/1033 (32%), Positives = 544/1033 (52%), Gaps = 27/1033 (2%) Query: 3 LSDLSITRPVMAVVMSLLLIVLGVTSFTRLTLRELPAIDPPIVSVNVEYTGASAAVVESR 62 +++ I RP+ A V++++L++ G + +L + + P I PP VSV+ Y GA A V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITQVLEDGLAGIEGISTIEAHS-RNGSSDISIEFVQSRDVEAAANDVRDAVSRVSDRMPD 121 +TQV+E + GI+ + + + S GS I++ F D + A V++ + + +P Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 QARAPEISKVEADADPILWLNMSSSTMDTLQ--LSDYAERYVVDRFSSLDGVAQVRIGGR 179 + + IS ++ + ++ S T Q +SDY V D S L+GV V++ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 QRYAMRIWLDRDQLAARELTVADVEAALQNENVEVPAGSIESA------QRDFTLRVERS 233 Q YAMRIWLD D L +LT DV L+ +N ++ AG + Q + ++ + Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 YLKPEDFAKLPLNKGEGGYVVRLGDVARVELSSAERRAYFQSNGVPNVGLGIVRNSTANA 293 + PE+F K+ L G VVRL DVARVEL + NG P GLGI + ANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 LDVAREARARAIEVQKSLPQGTNIFVAFDTTTFIDAAVERVYHTLVEAVVLVLVVIWVFL 353 LD A+ +A+ E+Q PQG + +DTT F+ ++ V TL EA++LV +V+++FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 GSARAASIPAVTVPVCLIASFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENVQRR 413 + RA IP + VPV L+ +F L AF +SIN LT+ +VL IGL+VDDAIVVVENV+R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 I-DLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLQGDTGRLFRELAVALAAAVA 472 + + PP A ++ Q+ A++ VL AVF+P+ F G TG ++R+ ++ + +A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAFVALTLTPMMSSKLLR---AHGQAKPNRFHQWFDGRMQAVSGAYGRSLERHVHRTWV 529 +S VAL LTP + + LL+ A F WF+ Y S+ + + T Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 530 FALLMLLALGASAWLMGRIPSEVAPAEDRGNFQIMIDGPEGAGFDYTVGQMHQVEDILRP 589 + L+ L + L R+PS P ED+G F MI P GA + T + QV D Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY--- 596 Query: 590 FVGPDKPIVRANPRVPGSFGSSEEMHTGRVSVFLQDWKKRTRPTTEVADEVQQKLNALSG 649 ++ +K V + V G S + + G V L+ W++R + + L Sbjct: 597 YLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGK 656 Query: 650 VR-ARTQ------VSGGLVRSRGQPFQLVLGGPDYAEIAQWRDRIMQRMEANPG-LVGPD 701 +R + + + G + + Q R++++ +P LV Sbjct: 657 IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 702 SDYKETRPQMRVNIDRVRAADLGVPVTAIGGALEALMGSRRVTTFVDNGEEYDVMLQAGR 761 + E Q ++ +D+ +A LGV ++ I + +G V F+D G + +QA Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 762 EGRMSPEDLTAIRVRSNRGELIPLSNLVTLSEVAEAGTLNRFNRLRAITIMAGLAPGYPL 821 + RM PED+ + VRS GE++P S T V + L R+N L ++ I APG Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 822 GDAIAWAQQAAQEELPEYAQVDWKGESREYQQSGSAVLFTFGMALLVVYLLLAAQFESFA 881 GDA+A + A +LP DW G S + + SG+ ++ +VV+L LAA +ES++ Sbjct: 837 GDAMALMENLA-SKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 882 HPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVMLVGLAAKNGILIVEFANQLRD-E 940 P+ +ML VPL ++G L+ L +++ +G++ +GL+AKN ILIVEFA L + E Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 941 GRSVHAAIVASASVRLRPILMTSIATVVGAIPLVVAGGPGSASRATIGVVVIFGVSLSTV 1000 G+ V A + + +RLRPILMTS+A ++G +PL ++ G GS ++ +G+ V+ G+ +T+ Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1001 LSLYVVPAFYSLI 1013 L+++ VP F+ +I Sbjct: 1016 LAIFFVPVFFVVI 1028
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 142 bits (360), Expect = 6e-47 Identities = 74/136 (54%), Positives = 97/136 (71%), Gaps = 7/136 (5%) Query: 1 MGMVSEFKQFAIRGNVIDLAVGVVIGAAFGKIVTALVEKIIMPPIGWAIGNVDFSRLAWV 60 M ++ EF++FA+RGNV+DLAVGV+IGAAFGKIV++LV IIMPP+G IG +DF + A Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT 60 Query: 61 LKPAGVDATGKDIPAVAIGYGDFINTVVQFVIVAFAIFLLVKLINRVTNRK--PDAPKGP 118 L+ A DIPAV + YG FI V F+IVAFAIF+ +KLIN++ +K P A P Sbjct: 61 LRDA-----QGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAAPAP 115 Query: 119 SEEVLLLREIRDSLKN 134 ++E +LL EIRD LK Sbjct: 116 TKEEVLLTEIRDLLKE 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 2e-22 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 RILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 61 ILV +D++ I L L G+ V ++ T + D +V D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQE-VEVRLNALSRR 119 + +++ +AR PVL+++A+++ + + GA DYL KPF L E + + AL+ Sbjct: 65 LLPRIK-KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 329 bits (845), Expect = e-116 Identities = 130/282 (46%), Positives = 175/282 (62%), Gaps = 1/282 (0%) Query: 1 MAFLDQHPGLGFPAAAGLGLLIGSFLNVVILRLPRRMEWQWRRDAREILELPDI-YEPPP 59 + P L F L+IGSFLNVVI RLP +E +W+ + R D + PP Sbjct: 5 LELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPP 64 Query: 60 PGIVVEPSHDPVTGDQLKWWENIPLFSWLMLRGKSRYSGKPISIQYPLVELLTSILCVAS 119 ++V S P + ENIPL SWL LRG+ R PIS +YPLVELLT++L VA Sbjct: 65 YNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAV 124 Query: 120 VWRFGFGWQGFGAIVLSCFLVAMSGIDLRHKLLPDQLTLPLMWLGLVGSMDNLYMPAKPA 179 GW A++L+ LVA++ IDL LLPDQLTLPL+W GL+ ++ ++ A Sbjct: 125 AMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDA 184 Query: 180 LLGAAVGYVSLWTVWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILFSSLVGAI 239 ++GA GY+ LW+++W FK LTGKEGMG+GDFKLLAALGAW G + + ++L SSLVGA Sbjct: 185 VIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAF 244 Query: 240 LGSAWLVAKGRDRATPIPFGPYLAIAGWVVFFWGNDLVDGYL 281 +G ++ + ++ PIPFGPYLAIAGW+ WG+ + YL Sbjct: 245 MGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 382 bits (982), Expect = e-133 Identities = 115/405 (28%), Positives = 212/405 (52%), Gaps = 9/405 (2%) Query: 22 TFVWEGADKRGVKMKGEQQARNANMLRAELRRQGIVPSMV-------KQKPKPLLGAA-G 73 + ++ D +G K +G Q+A +A R LR +G+VP V ++ L Sbjct: 3 QYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRK 62 Query: 74 KKITPKDIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYE 133 +++ D+A +RQ+AT++ + +P+ +L+ + + + P + +++ +R+ + G SL + Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 134 SISKHPVQFDELYRNLVRAGEGAGVLETVLETVATYKENIEALKGKIKKAMFYPATVVAV 193 ++ P F+ LY +V AGE +G L+ VL +A Y E + ++ +I++AM YP + V Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 194 AIIVSAILLIFVVPQFEQVFKSFGAELPAFTQLLVNASRFMVSYWWLTLMVTVGSVVGFI 253 AI V +ILL VVP+ + F LP T++L+ S + ++ L+ + + F Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFR 242 Query: 254 FAYKRSPRMQHGLDRLILKVPVIGKIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGAT 313 R + + R +L +P+IG+I AR+ART ++ + VPL++A+ I Sbjct: 243 VML-RQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVM 301 Query: 314 GNKLYEEAVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYF 373 N + D V G ++ A++Q LFP M+ M A GE +G LD+ML + A+ Sbjct: 302 SNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQ 361 Query: 374 EEEVNNAVDALSSLLEPLIMVFIGTIVGGIVIGMYLPIFKLGAVV 418 + E ++ + L EPL++V + +V IV+ + PI +L ++ Sbjct: 362 DREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 43.3 bits (102), Expect = 3e-08 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 1 MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETSSSL 60 KQ+GFTL+E+M+V+ II +LA++ +P +A + AV++ + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKAD----------KQKAVSDIVALE 53 Query: 61 GGLTNVTLANSGY 73 L L N Y Sbjct: 54 NALDMYKLDNHHY 66
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 510 bits (1316), Expect = 0.0 Identities = 170/479 (35%), Positives = 255/479 (53%), Gaps = 18/479 (3%) Query: 4 MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD 63 M+ LV DD+ IR +L L R G + +N A +A DL +TD+ +PD Sbjct: 1 MTGAT-ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 64 GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHAL 123 N +L+ I + P PV +++A + A++A + GA+D++ KP D+ L G++ AL Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 124 ELNNRDRPAPPPPPPEQASSLLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVAR 183 R RP+ + L+G S+AM+ + + ++ ++ + I GESG GKELVAR Sbjct: 120 AEPKR-RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 184 TIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD 243 +H+ G R GPFV +N AIP +L+ESE FGH+KG+FTGA G F+ A GGTLFLD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 244 EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYY 303 E+ ++P+ Q +LLR +Q+ VG DVRI++AT+KDL ++ G FR DLYY Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 304 RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRE 363 R+NV+ LR+PPLR+R D+P L + + A G + Q AL+ + + +PGNVRE Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 364 LENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAAVEPRE--------------- 408 LEN++ R AL D I+ + + +AA Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 409 AVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME 467 + D P S + ++E I AL R N+ K A LG+ LR K+++LG+ Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 13/70 (18%) Query: 431 ILTALVHNALKYG-RVMDEPARVKLRVERLERMAVIDVMDRGPGIPKAVAAQLFRPFYTT 489 ++ LV N +K+G + + ++ L+ + ++V + G K Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK------------N 306 Query: 490 SEHGTGLGLY 499 ++ TG GL Sbjct: 307 TKESTGTGLQ 316
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 28.7 bits (63), Expect = 0.012 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Query: 69 RDTAKSKRQAGDLAGAAAALDQALGLVSGDPAILQERAEVSVLQADWPAAERFAKQAIAL 128 R A+ + GDL + + S A QER+E + Q + A + +A Sbjct: 315 RIDARKMQMTGDLIMKNSVTVGGIAGASRQYAATQERSEQQISQVNNRVASTASDEARES 374 Query: 129 GSKTGPLCRRHWATIEQSRLARGEKENAASARAQIAG 165 K+ L + T+E ++ ASA A IAG Sbjct: 375 SRKSTSLIQEMLKTMESI------NQSKASALAAIAG 405
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.039 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 25/121 (20%) Query: 10 EALSEGGALARQLDAFAPRAAQLR-----LTGAIAEAFEQRDVLLAEAGTGTGKTYAYLV 64 + E A+ R+ + R +R L G + +R + AE TG GKT + Sbjct: 62 NLIPEAFAVVREA---SKRVFGMRHFDVQLLGGMV--LNERCI--AEMRTGEGKTLTATL 114 Query: 65 PALLSGLKTIVSTGTH--ALQDQLFHRD---LPRVRAALG--VGLRSALL---KGRANYL 114 PA L+ L G H + D L RD + LG VG+ + R Y Sbjct: 115 PAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYA 171 Query: 115 C 115 Sbjct: 172 A 172
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 133 bits (336), Expect = 6e-40 Identities = 40/262 (15%), Positives = 86/262 (32%), Gaps = 37/262 (14%) Query: 11 MDDGRRLMMTLVISLLLHGVLILGVVFAVSEDAPLVPTLDVIFSQTSTPLTPKQADFLAQ 70 +D RR ++S+ +HG ++ G+++ +P P P +A Sbjct: 8 LDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPA----------PAQPISVTMVAP 57 Query: 71 ANQQGGGNHDTAQRPRDSQPGVVPQDRTGLAPQAQRATSVNAPTPTQTRVVTSRRGEQAV 130 A D P P+ P+ + P + Sbjct: 58 A--------DLEPPQAVQPP---PEPVVEPEPEPEPIPEPPKEAPVV------------I 94 Query: 131 PTPQPNPQTDPLTPADAQRLQHDAEMARLAAEVHLRSEQYAKRPNRKFVSASTREYAYAN 190 P+P P+ P ++ + D + + A+ + +A+++ Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154 Query: 191 YLRAWVDRAERVGNLNYPDDARRRRLGGKVVISVGVRRDGSVESSRVLVSSGVPLLDDAA 250 + R YP A+ R+ G+V + V DG V++ ++L + + + Sbjct: 155 SGPRALSRN----QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREV 210 Query: 251 LRVVQLAQPFPPLPKTKDDVDI 272 ++ + P P + V+I Sbjct: 211 KNAMRRWRYEPGKPGSGIVVNI 232
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 2e-18 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 15 KVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQ 74 ++V DD IR L R G +V ++ IA ++ D++MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 75 TCALIKGNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRT 129 IK + PV+++S+++ + G+ YL KPF EL+ I Sbjct: 65 LLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 9e-23 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 2 ARIILIEDSPTDSAVFSQWLEKAGHTVVATDNAEEGLELVRSQVPDLVLMDVVLPGMSGF 61 A I++ +D V +Q L +AG+ V T NA + + DLV+ DVV+P + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRALARDQATKDIPVLLVSTKGMETDRAWGLRQGASDYIVKPPREDDLIARIRQ 117 + + + D+PVL++S + +GA DY+ KP +LI I + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 7e-13 Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 4/117 (3%) Query: 1949 QVPLVMVVDDSLTMRKVTGRVLERHNLDVTTARDGVEALELLEERVPDLMLLDIEMPRMD 2008 ++V DD +R V + L R DV + + DL++ D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 2009 GYELATAMRA-DPRFKAVPIVMITSRSGEKHRQRAFQIGVERYLGKPYQELDLMRNV 2064 ++L ++ P +P++++++++ +A + G YL KP+ +L+ + Sbjct: 62 AFDLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 32.0 bits (72), Expect = 0.011 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%) Query: 49 SREEKVAQAMNDAPAIPRLGIP-AYEWWSEGLHGIARNGYATVFPQAIGLAASWNTHLMQ 107 SR+++ A P GIP + E GY + W +++ + Sbjct: 192 SRKKRSTSAGPTVPDRDNDGIPDSLE----------VEGYTVDVKNKRTFLSPWISNIHE 241 Query: 108 QVGTVVSTEARAKFNQAGRPGKDHKRYAGLTIWSPNINI-FRDP 150 + G + K++ A P D ++ G N++ R P Sbjct: 242 KKGLTKYKSSPEKWSTASDPYSDFEKVTGR--IDKNVSPEARHP 283
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 29.7 bits (67), Expect = 0.045 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 1 MPLFRPRSVPAPARLGLALALAI 23 P+ RSVP +LGLA+ + Sbjct: 30 APILSERSVPKRVKLGLAMMITF 52
>PF05043#Transcriptional activator Length = 493 Score = 34.5 bits (79), Expect = 0.001 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCVPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F CV D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAH 139 + L+ H NTAH Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 72.3 bits (177), Expect = 6e-16 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 28/163 (17%) Query: 136 AGKSMGSGFIISADGYVLTNHHVVDGASEVTVKLTDRR-----------EFKA-KVVGSD 183 G + SG ++ +LTN HVVD L F A ++ Sbjct: 99 TGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 157 Query: 184 EQYDVALLKIEA--------KGLPTVRLGDSNTLKPGQWVVAIGSPFGLDHSVTAGIVSA 235 + D+A++K + + + ++ + Q + G P V+ Sbjct: 158 GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-------VAT 210 Query: 236 TGRSNPYADQRYVPFIQTDVAINQGNSGGPLLNTRGEVVGINS 278 S +Q D++ GNSG P+ N + EV+GI+ Sbjct: 211 MWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 146 bits (370), Expect = 2e-39 Identities = 95/455 (20%), Positives = 179/455 (39%), Gaps = 85/455 (18%) Query: 8 NIRNFSIIAHVDHGKSTLADRIIQLCGG---LQAREMEAQVLDSNPIERERGITIKAQSV 64 I N ++AHVD GK+TL + ++ G L + + D+ +ER+RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 65 SLPYTAKDGQVYHLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQSVANCYTA 124 S + +N IDTPGH+DF EV RSL+ +GA+L++ A GV+AQ+ + Sbjct: 62 SFQWEN-----TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 125 VEQGLEVVPVLNK-----IDLP----------TADVDRAKA----------------EIE 153 + G+ + +NK IDL +A++ + + + Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176 Query: 154 AVIG--------------IDAEDAVAV----------------SAKTGLNIDLVLEAIVH 183 VI ++A + SAK + ID ++E I + Sbjct: 177 TVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITN 236 Query: 184 RIPPPTPRDTDKLQALIIDSWFDNYLGVVSLVRVMQGEIKPGSKILVMSTGRTHLVDKVG 243 + T R +L + + ++ +R+ G + + + + + + Sbjct: 237 KFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYT 296 Query: 244 VFTPKRKELSALGAGEVGWINASIKDVHGAPVGDTLTLAVDPAPHALPGFQEMQPRVFAG 303 + ++ +GE+ + + + +GDT L + P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKL-NSVLGDTKLLPQRERI------ENPLPLLQTT 349 Query: 304 LFPVDAEYYPDLREALDKLRLNDAALRFE--PESSEAMGFGFRCGFLGMLHMEIVQERLE 361 + P + L +AL ++ +D LR+ + E + FLG + ME+ L+ Sbjct: 350 VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEII-----LSFLGKVQMEVTCALLQ 404 Query: 362 REYNLNLISTAPTVVY--EVLKTDGSVIPMDNPSK 394 +Y++ + PTV+Y LK I ++ P Sbjct: 405 EKYHVEIEIKEPTVIYMERPLKKAEYTIHIEVPPN 439
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.7 bits (72), Expect = 0.004 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%) Query: 62 LVDTPGLHREQKRAMNRVMNRAARGSLEGVDAAVLVIEAGRWDEEDT-LAFRVLSDAEVP 120 ++DTPG H + + R SL +D A+L+I A + T + F L +P Sbjct: 72 IIDTPG-HMDFLAEVYR--------SLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 121 VVLVVNKVDR 130 + +NK+D+ Sbjct: 123 TIFFINKIDQ 132
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 1e-14 Identities = 27/127 (21%), Positives = 46/127 (36%) Query: 7 SHPRLLLVEDDPISRGFLQAVLEGLPATLDCADSLSSALDRARERRHDLWLIDVNLPDGT 66 + +L+ +DD R L L + + ++ DL + DV +PD Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 67 GSGLLRALRLLHPDVPALAHTADTSTAMQSGLQSDGFLQVLIKPLTSERLLQAVRRGLAR 126 LL ++ PD+P L +A + G L KP L+ + R LA Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 127 GRSGVAP 133 + + Sbjct: 122 PKRRPSK 128
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 44.9 bits (106), Expect = 1e-08 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Query: 38 MALYERINHEMEEETEHADALLRRILFLEGDPDMRPAEFA---------PGKTVVEMLER 88 L+E+ + E D + R+L + G P E+ + EM++ Sbjct: 44 FTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQA 103 Query: 89 DLVVEYEVRAALAAGMKLCEDHGDYVSRDILLKQLQDTEEDHAWWLEQQLG 139 + ++ + + L E++ D + D+ + +++ E+ W L LG Sbjct: 104 LVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK-QVWMLSSYLG 153
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 74.5 bits (183), Expect = 1e-16 Identities = 48/293 (16%), Positives = 95/293 (32%), Gaps = 36/293 (12%) Query: 82 VERGQLLVQLDPADTEAAMQQAEANLAKTVRQVRGLYRSVEGAQAELSAREVALRRARSD 141 V R L++ + + Q E NL K + A ++ E R +S Sbjct: 184 VLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER-------LTVLARINRYENLSRVEKSR 236 Query: 142 FARRKDLAATGAIS--------------NEELAHARDELAAAEAAVSGSRESFERNRAL- 186 L AI+ EL + +L E+ + ++E ++ L Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 187 ---VDDSAVANQPDVQTAAAQLRQAYLNHARTGVVAPVSGYVARRAAQ-VGQRVQPGSVL 242 + D ++ +L + + + APVS V + G V L Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL 356 Query: 243 MVVVPLEQV-WVEANFKETQLKHMRLGQEVELHSDLYGGGVSYTGRIQSLGLGTGSAFSL 301 MV+VP + V A + + + +GQ + + + + G + G Sbjct: 357 MVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPY--TRYGYL------VGK-VKN 407 Query: 302 LPAQNASGNWIKIVQRVPVRIAVDSKQLASNPLRIGLSMKVEVKLHDQQGSVL 354 + + +V V + I + + + + M V ++ SV+ Sbjct: 408 INLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVI 460
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 117 bits (295), Expect = 1e-30 Identities = 93/400 (23%), Positives = 164/400 (41%), Gaps = 26/400 (6%) Query: 33 LAMASFMQVLDSTIANVSLPTIAGNLGASSQQATWVITSFAVSTAIALPLTGWLSRRFGE 92 L + SF VL+ + NVSLP IA + WV T+F ++ +I + G LS + G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 93 TKLFVWSTLAFTIASLLCGLAQSM-GMLVVARALQGFVAGPMYPITQSLLVSIY-PREKR 150 +L ++ + S++ + S +L++AR +QG +P ++V+ Y P+E R Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKENR 137 Query: 151 GHALALLSMITVVAPIAGPILGGWITDNYSWEWIFLINVPLGIIASSIVGSQLRH--RPE 208 G A L+ I + GP +GG I W +L+ +P + + I L + E Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIP---MITIITVPFLMKLLKKE 192 Query: 209 QLEKPRMDYIGLILLVAGVGALQLVLDLGNDEDWFSSDKIVVLACIAAVALVVFVIWELT 268 K D G+IL+ G+ L F++ + ++ ++ ++FV Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRK 242 Query: 269 DKDPIVDLKLFRHRNFRTGTLAMVVAYAAFFSVSLLIPQWLQRDMGYTAIWAGLATAPIG 328 DP VD L ++ F G L + + ++P ++ + G G Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 329 ILPVLMT-PFVGKYALRFDLRLLATIAFIFMSFTSFFRSNFNLQVDFSHVATIQLVMGVG 387 + V++ G R + I F+S SF ++F L + + +++ V Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS-VSFLTASFLL--ETTSWFMTIIIVFVL 359 Query: 388 VALFFMPVL--HILLSDLDGREIAAGSGLATFLRTLGGSF 425 L F + I+ S L +E AG L F L Sbjct: 360 GGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 37.9 bits (87), Expect = 2e-04 Identities = 46/263 (17%), Positives = 83/263 (31%), Gaps = 20/263 (7%) Query: 410 VMSGGGSSRVDVTINGGNAVPGITPTTWPGPVIIHPSSPLQALRAALPNAQIDYVDGKDR 469 + G++ + I+ AV G + P + + +S + R A D Sbjct: 268 IQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQT----PDS 323 Query: 470 AAAARAAKAADVAIVFATQWST-----ESVDLPDMRLPDNQDALIEAVA-KANPKTTVVL 523 A AA + + + + +VDLP MRL + ++ + +V Sbjct: 324 VRYALGMDAAKLGLPPSVNLNAVAKASGTVDLP-MRLTNEARGNTTTLSVVSTDGVSVPK 382 Query: 524 ETNGPVRMPWAERVPAVLQAWYPGIGGGEAIANLLTGAVNPSGHLPVTWPVDESQLPRPS 583 PVRM + + P L +P G+ + P P Sbjct: 383 AV--PVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPSSTTPVVPKPVPV 440 Query: 584 IPGLGFKPVEPGEDTIDYAIEGANVG-YKWFAARKLTPRYPFGHGLSYTQFRMGGLRVEA 642 G PV+ +T I + A + P Y + + R Sbjct: 441 YEGATLTPVKATPETYPGVITLPEDLIIGFPADSGIKPIY-----VMFRDPRDVPGAATG 495 Query: 643 NGSQLTASFEVENIGQREGAAVP 665 G ++ ++ + Q EGA +P Sbjct: 496 KGQPVSGNW-LGAASQGEGAPIP 517
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.7 bits (59), Expect = 0.033 Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 16 EDARASTAQIARRLGLSRTTVQSRIEKL 43 R + + A LGL+R T++ +I +L Sbjct: 446 TATRGNQIKAADLLGLNRNTLRKKIREL 473
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 87.6 bits (217), Expect = 6e-21 Identities = 36/175 (20%), Positives = 83/175 (47%), Gaps = 3/175 (1%) Query: 439 VIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV-ALLFNLLIVVAVMSLFG 497 +GP + E V V +++ + + + + + + A+ +V AL+ ++L+ V + ++ Sbjct: 142 SVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQ 201 Query: 498 ATMTLPGFAGLALSVGLSVDANVLINERIREELRL--GVPAKSAIAAGYEKAGGTILDAN 555 L A L G S++ V++ +R+RE L +P + + + + Sbjct: 202 LKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTG 261 Query: 556 LTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610 +T L+ V + +G ++GF M+ G+F ++++ V++ + + I R K K Sbjct: 262 MTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEK 316
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 283 bits (725), Expect = 1e-96 Identities = 98/320 (30%), Positives = 160/320 (50%), Gaps = 10/320 (3%) Query: 4 FPLHLIPNDTKIDFMRWRKPVLILMLVLAVVSVGIIVGKGFNYALEFTGGTLVQTSFQKT 63 F L L+P T DF RW+ +V+ + SV + + G N+ ++F GGT ++T Sbjct: 3 FRLKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTA 62 Query: 64 VDVDQVREKLSKAGFENAQVQNAR------GGNEVMIRLQPHGQSNNRDDAAR---TVAE 114 +DV R L + + R + MIR+Q + + Sbjct: 63 IDVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVN 122 Query: 115 DVRKAVTSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVA 174 V A+T+ + + E VGP+V +L V++ + V + YI RFEW+FA+ A Sbjct: 123 KVETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGA 182 Query: 175 SLTALFDLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRALRVEPL 234 + + D+L+TV ++ +FDLT +A LL++ G++IND +VVFDR+REN + PL Sbjct: 183 VVALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPL 242 Query: 235 -EVLNRSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIGAVIVVISSVIVAV 293 +V+N S+N+TLSRTV+T + L+ + + I+GG+ + G + G SSV VA Sbjct: 243 RDVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAK 302 Query: 294 PMLSIGPFAVTKQDLLPKAK 313 ++ K+ P K Sbjct: 303 NIVLFIGLDRNKEKKDPSDK 322
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.1 bits (70), Expect = 0.016 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 53 LASGITQILVVGDADADTARFGDAQLVRLSLGAVLDDPAAALNQLAAP--AAATASTGAG 110 + S I+ ++ +ADADT A V L+ + + + A A +++ A Sbjct: 248 ILSAISASFILSNADADTRTKAAAG-VELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAA 306 Query: 111 GESASSKRIVAITSCP-TGIAHTFMAAEGLQQAA---KKLGYQ 149 +S +AI+ IA F A +++ + KKLGY Sbjct: 307 AGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYD 349
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 580 bits (1496), Expect = 0.0 Identities = 211/568 (37%), Positives = 324/568 (57%), Gaps = 11/568 (1%) Query: 274 AIVGIGASPGVAIGIVHRLRAAQTEVADQPV-GLGDGGAQLHDALTRTRQQLAAIQDDTQ 332 I GI AS GVAI ++ + + +L AL +++++L AI+D T+ Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTE 63 Query: 333 RQLGASDAAIFKAQAELLNDTDLITR-TCQLMVEGHGVAWSWHQAVEQIASGLAALGNPV 391 +GA A IF A +L+D +L+ ++ E ++ + + S ++ N Sbjct: 64 ASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEY 123 Query: 392 LAGRAADLRDVGRRVLAQLDPAAAGAGLTDLPAQPCILLASDLSPSDTANLDTARVLGLA 451 + RAAD+RDV +RVL L G+ L + + +++A DL+PSDTA L+ V G A Sbjct: 124 MKERAADIRDVSKRVLGHLIGVETGS-LATIA-EETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 452 TAQGGPTSHTAILSRTLGLPALVAVGGQLLDIEDGVTAIIDGSSGRLYLNPSELDLDAAR 511 T GG TSH+AI+SR+L +PA+V I+ G I+DG G + +NP+E ++ A Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 512 THIAEQQAIRQREAAQRALPAETTDGHHIDIGANVNLPDQVAMALTQGAEGVGLMRTEFL 571 A + +Q A P+ T DG H+++ AN+ P V L G EG+GL RTEFL Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 572 FLESGRTPSEDEQHATYLAMAQVLDGRPLIVRALDIGGDKQVAHLELPHEENPFLGVRGA 631 +++ + P+E+EQ Y + Q +DG+P+++R LDIGGDK++++L+LP E NPFLG R Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 632 RLLLRRPDLLEPQLRALYRAVKDGARLSIMFPMITSVPELIALRAICARIRAELDA---- 687 RL L + D+ QLRAL RA G L +MFPMI ++ EL +AI + +L + Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYG-NLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVD 420 Query: 688 --PEVPIGIMIEVPAAAAQADVLARHADFFSIGTNDLTQYVLAIDRQNPELAAEADSLHP 745 + +GIM+E+P+ A A++ A+ DFFSIGTNDL QY +A DR N ++ HP Sbjct: 421 VSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHP 480 Query: 746 AVLRMIRSTIEGARTHGRWVGVCGGLAGDAFGASLLAGLGVQELSMTPNDIPAVKARLRG 805 A+LR++ I+ A + G+WVG+CG +AGD LL GLG+ E SM+ I +++L Sbjct: 481 AILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLK 540 Query: 806 AALHQLQELAEQALACETAEQVRALEAK 833 + +L+ A++AL +TAE+V L K Sbjct: 541 LSKEELKPFAQKALMLDTAEEVEQLVKK 568
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1080 bits (2794), Expect = 0.0 Identities = 512/1038 (49%), Positives = 705/1038 (67%), Gaps = 17/1038 (1%) Query: 1 MPKFFIEHPVFAWVVAILISLAGVISILNLGIESYPTIAPPQVTVTANFPGASADTAEKS 60 M FFI P+FAWV+AI++ +AG ++IL L + YPTIAPP V+V+AN+PGA A T + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNKVSLATPRLPS 120 VTQVIEQ + GID+L+Y +S+S + G VTITLTF++GTD DIAQVQVQNK+ LATP LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVTQQGVVVAKANAGFLMVAALRSDNPSINRDALNDIVGSRLLEQISRVPGVGSTNQFGA 180 EV QQG+ V K+++ +LMVA SDNP +D ++D V S + + +SR+ GVG FGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGISFTATVSAEGRF 240 +YAM IWL+ + L Y L+ V+ ++ QN Q AAG +G P G A++ A+ RF Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 SSPEQFENIILRTDNNGATVRLKDVARVTVGPSSYGFDTQYNGKPTGAFGIQLLPGANAL 300 +PE+F + LR +++G+ VRLKDVARV +G +Y + NGKP GI+L GANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 NVSDAVGAKLDELQPTFPQGVTWFAPYESTTFVRISIEEVIHTLVEAIVLVFLVMLLFLQ 360 + + A+ AKL ELQP FPQG+ PY++T FV++SI EV+ TL EAI+LVFLVM LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLFAMVLAIGIVVDDAIVVIENVERIM 420 N RAT+IPT+ +PV LLGTF + G++IN LT+F MVLAIG++VDDAIVV+ENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPSSLQPGASGAIYKQFALTIAMSMGF 480 E+ L PK AT+K+M+QI GA+V I +VL+AVFIP + G++GAIY+QF++TI +M Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SAFLALSFTPALCGAFL---TSTHSTKKNWVYRTFDKYYDKLAHRYVGVVGHTLKRSPPW 537 S +AL TPALC L ++ H K + F+ +D + Y VG L + + Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 538 MIAFVALMVLCGFLFTRMPGSFLPDEDQGFAVAIVQLPPGATKIRTNEAFAQMRAVLEKQ 597 ++ + ++ LF R+P SFLP+EDQG + ++QLP GAT+ RT + Q+ K Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 PA--VEGLLQIAGFSFLGSGENVGMGFIRLKPWEERDV---TAEQLIQQLNGAFYGIKGA 652 VE + + GFSF G +N GM F+ LKPWEER+ +AE +I + I+ Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 653 QIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVLGKAAKKQDTLVGVRPNGL 712 + N+P + LG GFD L D++G G +AL ARN +LG AA+ +LV VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 713 ENSPQLQLHVDRVQAQSMGLNVSDIYNSIQLMLAPVYVNDYFAEGRIKRVNMRADDQFRA 772 E++ Q +L VD+ +AQ++G+++SDI +I L YVND+ GR+K++ ++AD +FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 773 GPESLRNFFTPSTTATGADGQPAMIPLSNVVKAEWNYASPALNRYNGYSAVNIVGNPAPG 832 PE + + S A+G+ M+P S + W Y SP L RYNG ++ I G APG Sbjct: 781 LPEDVDKLYVRS-----ANGE--MVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 833 GSSGQAMSAMEEIINNDLPPGFGFDWSGMSYQEIIAGNAATLLLALSVVVVFLCLAALYE 892 SSG AM+ ME + + LP G G+DW+GMSYQE ++GN A L+A+S VVVFLCLAALYE Sbjct: 834 TSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 893 SWSIPVAVLMVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFALE-Q 951 SWSIPV+V++VVP+G++G + + L ND+YF +G++T IGL+AKNAILIVEFA + Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLM 952 Query: 952 RAAGKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANARHSIGTGVIGGMVF 1011 GK + EATL A +R RPILMTS AFILGVLPLAIS GAG+ A++++G GV+GGMV Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 1012 ATVLGLIFIPLFFVVVRR 1029 AT+L + F+P+FFVV+RR Sbjct: 1013 ATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 7/108 (6%) Query: 59 RSADVRARVDGVVLKRLYTEGANVKEGQPLFQIDPSQLKATLLQAQGQLAAAEATYTNAK 118 RS +++ + +V + + EG +V++G L ++ L A+ +++ A+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA-------LGAEADTLKTQSSLLQAR 147 Query: 119 IAATRARSLAPQQYVSRADIDTAEANERSSGASVQQARGAVEAARIQL 166 + TR + L+ +++ S ++ + Q Sbjct: 148 LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF 195 Score = 31.0 bits (70), Expect = 0.010 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 59 RSADVRARVDGVVLK-RLYTEGANVKEGQPLFQIDPSQLKATLLQAQGQLA 108 +++ +RA V V + +++TEG V + L I P L+ + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPED---DTLEVTALVQ 373
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 4e-11 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 9/170 (5%) Query: 7 RAARRSDCDRRIHAAVHALLAERGMR-LSMDAVAERAGCSKQTLYSYYGCKENLLRDVLQ 65 + + I L +++G+ S+ +A+ AG ++ +Y ++ K +L ++ + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 66 DHVH----LAVGPLGTVSGDLRADLLAFARGHLDRLNNPDV---LQTCRLVEAESHRFPD 118 L + GD + L L+ + L + E Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 119 QSQQIFHDGVVGMQQRLAHRFEQAIEAGQLRHD-DPRFMAELLLSMIVGL 167 QQ + + R+ + IEA L D R A ++ I GL Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.9 bits (70), Expect = 0.008 Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 25/180 (13%) Query: 180 AALDDAQFMQWGWRVPFLASALLVLTGLWVRLSITETPDFQKTLDSKTRVTLPLGTVVSQ 239 A L A M LA L+LT + V L+ + D D T L G + + Sbjct: 118 ALLSVAVAMTLAPGWGTLA--ALLLTWVLVALTFIDL-DKMLLPDQLTLPLLWGGLLFNL 174 Query: 240 HGP--ALVIGTLGAFATFVLFYLMT-VFALGYGTKTLGYDKEQFLLLQMAGIVFFVLGIP 296 G +L +GA A +++ + + F L G + +GY F LL G LG Sbjct: 175 LGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYG--DFKLLAALG---AWLGWQ 229 Query: 297 LSAKFGDRHGAPLAMLLASIAIVAFGLAFAPLFQANHPLQVLAF---LSLGFFFMGLTYG 353 P+ +LL+S+ G+ L + +H + + F L++ ++ L +G Sbjct: 230 ---------ALPIVLLLSSLVGAFMGIGLI-LLRNHHQSKPIPFGPYLAIA-GWIALLWG 278
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 4e-16 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 3/111 (2%) Query: 120 RIAALVVDDSLSARTYAGALLSMYGYRVVLAADGPAGLEAIERDPSIRLTIVDQEMPGMD 179 LV DD + RT LS GY V + ++ I L + D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDEN 61 Query: 180 GVEFTRRLRAIRSRDKVALIGISGNSDSSLIPRFLKNGANDFLRKPFSREE 230 + R++ R V + +S + + + GA D+L KPF E Sbjct: 62 AFDLLPRIKKARPDLPVLV--MSAQNTFMTAIKASEKGAYDYLPKPFDLTE 110
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 31.6 bits (72), Expect = 0.006 Identities = 13/26 (50%), Positives = 18/26 (69%) Query: 356 TLGGARALGFGDTIGSIEIGKQADLI 381 T+ A A G IGS+E+GK+ADL+ Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLV 435
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 27.3 bits (60), Expect = 0.047 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 54 LAGARVLDVGCGGGL---LSESMARLGAQVTAIDLAPELVKVARLHGLESGVQVDYRVQS 110 + G G G+ ++ ++A GA + A+D PE +L + S ++ + R Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPE-----KLEKVVSSLKAEARHAE 60 Query: 111 VEDLAAEQPGSFDAVTCMEMLEHVPDPTAIIRACARLLKPG 151 + D + + + P I+ A +L+PG Sbjct: 61 AFPADVRDSAAIDEI-TARIEREM-GPIDILVNVAGVLRPG 99
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 31.6 bits (71), Expect = 0.003 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 49 APIALASLRPVVSKGARAMLGVAFAELDAEACVALVPEFLQRYEDVIGTQSQLF-DGVEE 107 A +A+ + VV KGA A LG A +++ E LVP L++ S+LF G++ Sbjct: 418 AMVAVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQ---NGSKLFTQGMQR 474 Query: 108 LLVRLENAGCVWGIVTN 124 + L N G G+ TN Sbjct: 475 ITSGLGNVGSKMGLQTN 491
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 29.5 bits (66), Expect = 0.011 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 14/72 (19%) Query: 114 QQALGTLHAFAEAV------VAVEAVLFARTQPGDAAAVAVQWLDARQRVAGDSAAPGGV 167 + L L F V + +E ++F Q GDA + R VA GGV Sbjct: 178 KDILDNLPQFLSTVDLPTDQILIEGLIF-EVQQGDALDFSFAAGSQRGTVA------GGV 230 Query: 168 ATAAWLTQLLQA 179 T LT +L + Sbjct: 231 NTDR-LTSVLSS 241
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 70.8 bits (173), Expect = 7e-17 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 14/147 (9%) Query: 65 RSVRKRQAEYFFGRLAARHALHQQGLVVHPDTVQIATGNAREPIWPKTAVGSISHTHRLA 124 + RKR+AE+ GR+AA HAL + G+ P G+ R+P+WP GSISH A Sbjct: 41 SAGRKRKAEHLAGRIAAVHALREVGVRTVP-----GMGDKRQPLWPDGLFGSISHCATTA 95 Query: 125 MSAVAPADRWRGIGIDLEHLADPDAQAALRATVVNASELALLQTLHDAGDATLDALLTLV 184 ++ ++ + IGID+E + L +++++ E +LQ LTL Sbjct: 96 LAVISR----QRIGIDIEKIMSQHTATELAPSIIDSDERQILQASLL----PFPLALTLA 147 Query: 185 FSAKESLFKASFAAVRRYFDFSAAQVT 211 FSAKES++KA F+ F++A+VT Sbjct: 148 FSAKESVYKA-FSDRVTLPGFNSAKVT 173
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 61.2 bits (148), Expect = 3e-14 Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 9/104 (8%) Query: 38 GTGAEATPGAMVTVHYTGWLYDENAADKHGKKFDSSLDRAEPFQFLLGGHQVIRGWDDGV 97 GTGA+ VTV YTG L D G FDS+ +P F + QVI GW + + Sbjct: 136 GTGAKPGKSDTVTVEYTGTLID-------GTVFDSTEKAGKPATFQVS--QVIPGWTEAL 186 Query: 98 AGMRVGGKRTLMIPPDYGYGDNGAGGVIPPGASLVFDVELLGVQ 141 M G + +P D YG GG I P +L+F + L+ V+ Sbjct: 187 QLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 5e-14 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 3/122 (2%) Query: 3 IRVFLIDDHALVRTGMKMILSKEVDVDVVGEAESGEAALPQIRQLKPDIVLCDLHLPGVS 62 + + DD A +RT + LS+ DV + I D+V+ D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLEITERIVKGDYGTRVIIVSVLEDGPLPKRLLEAGASGYVGKGGDAHELLRAVREVALG 122 ++ RI K V+++S + E GA Y+ K D EL+ + AL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR-ALA 120 Query: 123 RR 124 Sbjct: 121 EP 122
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.8 bits (95), Expect = 4e-05 Identities = 41/278 (14%), Positives = 68/278 (24%), Gaps = 16/278 (5%) Query: 878 TVRAKPEPTAQAAAKPRPVPKERAEPQVGNDTSSTTAPVSNTVPASQPPVATPVAK---- 933 TV T P E ++ + P + P+ +K Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNE-EIARVDEAPVPPPAPATPSETTETVAENSKQESK 1049 Query: 934 -ADTDHERPAAPTV-------AADAPAKPAPAATASTAVNADVAATQAVEQRPAPVAQHA 985 + + + T A + K ++ TQ E + + Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 986 PAAPAPVAAPAPVASTPVPAVAVVAPVAETASTAPVAAPSAPAPTVASPVSNVAATSTQQ 1045 A V A A + P + P S T+ + Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 1046 QPLGSVSARAAASDTDKAAAPNADRQQRAAAADVATPATTQAAPVQTTPVKQTADLSAPV 1105 QP S+ T+ + + TPATTQ + K V Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVE--NPENTTPATTQPTVNSESSNKPKNRHRRSV 1227 Query: 1106 AAMPAAQAEVVTATSPHAEPPAAQAPSSEVAVTATSTL 1143 ++P E T +S A +S S Sbjct: 1228 RSVP-HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDA 1264 Score = 39.7 bits (92), Expect = 8e-05 Identities = 43/277 (15%), Positives = 78/277 (28%), Gaps = 20/277 (7%) Query: 519 NIPAPPAVTSIKPSQPAPVREETPAPMAPVAAPAPVVTVPIPAPVTGVVGWL-------- 570 NI P + + PS P+ E APV PAP P+ T V Sbjct: 996 NITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT----PSETTETVAENSKQESKTV 1051 Query: 571 -KRIFGGVEPLAPAPESIPRPRQNDAGRNHRNERGERGGQRRDGRDARNGGHSGNQQRGN 629 K E A E + N NE + G + ++ + + ++ Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 630 GNGANKERRDERRQPASGQGAQNGAQAQQQAQTPKPPRNEAQAPKQ-QQPQQAQQQKPKP 688 ++ ++ + + Q ++ Q P + K+ Q +P Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 689 QNQTPRPPRTP--AQQDGAQAERQPRPARQDEGMAAAQTVTSTAAMATTS----SVVAAI 742 +T P TV S ++ + SV + Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 743 TDAAAPATAQTNANEAAQAHAVDVTVSASTADPGADA 779 + T+ + + A +A +D A A Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA 1268 Score = 33.5 bits (76), Expect = 0.007 Identities = 37/280 (13%), Positives = 68/280 (24%), Gaps = 32/280 (11%) Query: 840 NDLDSDSEGDDAAAQAHASAAPRAGQPEFDFDDDAPAPTVRAKPEPTAQAAAKPRPVPKE 899 +S E + A E + + E + E Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 900 RAEPQVGNDTSSTTAPVSNTVPASQPPVATPVAKADTDHERPAAPTVAADAPAKPAPAAT 959 E T + + ++ +P A + P Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 960 ASTAVNADVAATQAVEQRPAPVAQHAPAAPAPVAAPAPVASTPVPAVAVVAPVAETASTA 1019 + T AD P + + PV V + V P T +T Sbjct: 1160 SQTNTTADTE---------QPAKETSSNVEQPVTESTTVNTGNSV---VENPENTTPATT 1207 Query: 1020 PVAAPSAPAPTVASPVSNVAATSTQQQPLGSVSARAAASDTDKAAAPNADRQQRAAAADV 1079 PTV S SN ++ SV + + A +++ + A D+ Sbjct: 1208 --------QPTVNSESSNKPKNRHRR----SVRSVPH---NVEPATTSSNDRSTVALCDL 1252 Query: 1080 ATPATTQA-----APVQTTPVKQTADLSAPVAAMPAAQAE 1114 + T A Q + +S ++ + Sbjct: 1253 TSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEG 1292
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 2e-04 Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 11/151 (7%) Query: 444 ASVTPLERVKDMQAAQQRMAQLHADSRAAQEKAAAANRAHAAMPPRDAFASRDARDSPFR 503 A+V E+ K Q + ++ + QE++ D + S Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 504 SQA---QPARWKPPVQEQ---RQLPPRQQFAFAASPRGEHAQPSQPRYEPRPVMKPEPQQ 557 + A QPA+ EQ + +P +QP KP+ Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK--- 1220 Query: 558 HMQRMASFTPPRAAPARPADTHQQHPHPAAQ 588 R PA T A Sbjct: 1221 --NRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 31.6 bits (71), Expect = 0.013 Identities = 20/142 (14%), Positives = 37/142 (26%), Gaps = 16/142 (11%) Query: 451 RVKDMQAAQQRMAQLHADSRAAQEKAAAANRAHAAMPPRDAFAS-RDARDSPFRSQAQPA 509 + Q + +EKA +P + S + + + QA+PA Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 510 RWKPPVQEQRQLPPRQQFAFAASPRGEHAQPSQPRYEPRPVMKPEPQQHMQRMASFTPPR 569 R P ++ S A QP E ++ + + Sbjct: 1147 RENDPTVNIKE---------PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 570 ------AAPARPADTHQQHPHP 585 A +P + P Sbjct: 1198 NPENTTPATTQPTVNSESSNKP 1219 Score = 29.6 bits (66), Expect = 0.041 Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 27/177 (15%) Query: 417 AVPLTTVAHAMQAPPAIHSPHVQAPAFASVTPLERVKDMQAAQQRMAQLHADSRAAQEKA 476 +TT + P++ S + + A P+ ++ + A++ + K Sbjct: 994 TTNITTPNNIQADVPSVPSNN-EEIARVDEAPVPPPAPATPSET--TETVAENSKQESKT 1050 Query: 477 AAANRAHAAMPPRDA--FASRDARDSPF-RSQAQPARWKPPVQEQRQLPPRQQFAFAASP 533 N A A + + A+ +E + Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ-------------- 1096 Query: 534 RGEHAQPSQPRYEPRPVMKPEPQQHMQRMASFTPPRAAPARPADTHQQHPHPAAQPQ 590 E + + E + ++ E Q + ++ S P+ + P A+P Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV-------QPQAEPA 1146
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 53.8 bits (129), Expect = 1e-11 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 5/96 (5%) Query: 25 QQAAAPTVAPTELAAVKTPPPEYAPQLACAGIGGTTVLRVVVGTQGTPTDVLVAQSSGQP 84 + T + A+ P+Y + I G ++ V G +V + + Sbjct: 145 ATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN 204 Query: 85 VLDEAARTRVREWQFKAATRNGQAVPQTIQVPVSFK 120 + + + +R W+++ V V + FK Sbjct: 205 MFEREVKNAMRRWRYEPGKPGSGIV-----VNILFK 235
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.9 bits (103), Expect = 2e-06 Identities = 45/282 (15%), Positives = 78/282 (27%), Gaps = 37/282 (13%) Query: 153 QPATEASTQAASAAVSSPAQAGASAAKSEPAPSPTPTPTPARPARPAADLVERPDTDQAP 212 T + QA +V S + + +P P P PA P+ + E + Sbjct: 996 NITTPNNIQADVPSVPS-----NNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 213 ENAPEPVQAASEPVTADVPQVTVQVPPVTIESPLQVTETPVATNDFVVPPPPTITLTPPA 272 E Q A+E TA +V + + + Sbjct: 1051 VEKNE--QDATET-TAQNREVAKEAKSNVKANTQTNEVAQSGSE---------------- 1091 Query: 273 IERAAPQVQVRQRDIQTVTERPQVRQLQRPATEVAVRSAAAPAVRERDIVIPERPQRTAL 332 + ++ TV + + + EV ++ +E+ E Q A Sbjct: 1092 TKETQTTET---KETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ----SETVQPQAE 1144 Query: 333 AARPREISPKVRMPDVAVRTAALPSVPDPAPAPVAVPPAVPAASATANPTPTAAAAQPAQ 392 AR + P V + + +T PA + S T N + P Sbjct: 1145 PAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN-SVVENPEN 1201 Query: 393 PAPQPAQSQANPAPPERSSNASAAASSAAKPAASGPKPADRS 434 P Q N + N + + +PA S Sbjct: 1202 TTPATTQPTVNSESSNKPKNRHR---RSVRSVPHNVEPATTS 1240 Score = 38.9 bits (90), Expect = 7e-05 Identities = 29/201 (14%), Positives = 55/201 (27%), Gaps = 16/201 (7%) Query: 234 TVQVPPVTIESPLQVTETPVATNDFVVPPPPTITLTPPAIERAAPQVQVRQRDIQTVTER 293 TV +T + +Q V +N+ + + PPA + + + + ++ Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 294 PQVRQLQRPATEVAVRSAAAPAVRERDIVIPERPQRTALAARPREISPKVRMPDVAVRTA 353 + + Q A A + + + + +E T Sbjct: 1051 VEKNE-QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE--------TK 1101 Query: 354 ALPSVPDPAPAPVAVPPAVPAASATANPTPTAAAAQPAQPAPQPAQSQANPAPPERSSNA 413 +V A V T+ P Q + Q QA PA + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQ-------VSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 414 SAAASSAAKPAASGPKPADRS 434 S A +PA + Sbjct: 1155 IKEPQSQTNTTADTEQPAKET 1175 Score = 35.4 bits (81), Expect = 8e-04 Identities = 22/164 (13%), Positives = 45/164 (27%), Gaps = 12/164 (7%) Query: 153 QPATEASTQAASAAVSSPAQAGASAAKSEPAPSPTPTPTPARPARPAADLVERPDTDQAP 212 + AT + A + ++ P + T P D Q+ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 213 ENAPEPVQAASEPVTADVPQVTVQVPPVTIESPLQVTETPVATNDFVVPPPPTITLTPPA 272 N + ++ +++V PVT + + N V P T T Sbjct: 1162 TNTTADTEQPAKETSSNVE------QPVTESTTVN------TGNSVVENPENTTPATTQP 1209 Query: 273 IERAAPQVQVRQRDIQTVTERPQVRQLQRPATEVAVRSAAAPAV 316 + + + R ++V P + ++ A Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLT 1253
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.013 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 4/121 (3%) Query: 688 ASLLLLCDDAAELDRLEEMLAALGHEPVALLELPAAVAMATSDPMRFDGVLLK-RDRAGD 746 A++L+ DDAA L + L+ G++ + D V+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDEN 61 Query: 747 AEHAIDALHAAAPKLPLILATRAMSLATR-KGLGGAITEIIAQPFDLSALALALERALGR 805 A + + A P LP+++ + + T K + + +PFDL+ L + RAL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 806 T 806 Sbjct: 122 P 122
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 4e-05 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 10/84 (11%) Query: 609 NALRHA---CAGEVHLRLHSI-DSDSFRLEVSDDGDGFEPEGPR--GLGLIVMRERAQTV 662 N ++H + L D+ + LEV + G G GL +RER Q + Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQML 325 Query: 663 GG---TLAIESAPGAGTRVTLRLP 683 G + + G + +P Sbjct: 326 YGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99 bits (249), Expect = 2e-24 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 447 TLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLATNDVQVILSDQRMSDMSGTE 506 T+L+ DD+ + L + R GY + N + +A D ++++D M D + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 507 FLGRVKMLYPDTVRLVLSGYTDLATVTEAINRGAIYRFLTKPWNDDELREHIRQA 561 L R+K PD LV+S T +A +GA Y +L KP++ EL I +A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA-YDYLPKPFDLTELIGIIGRA 118
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.8 bits (61), Expect = 0.009 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 34 QDKLSALHALEAAMPAGEEERLRELAEANRANGALLARRRREVNWALRHLGRTESAPSYD 93 Q +++ L A +A++ A + RE A A A R++ A T + P+ Sbjct: 201 QIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRA----ANTYAMPANG 256 Query: 94 AKGQSSVLRG 103 + ++ RG Sbjct: 257 SVVATAAGRG 266
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 3e-05 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 9/75 (12%) Query: 184 VLVVDDSRVARQQIRSVLDQLGVSATLLSDGRQALDHLLQVAASGENPADRYAMVISDIE 243 +LV DD R + L + G + S+ + A +V++D+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA---------AGDGDLVVTDVV 56 Query: 244 MPAMDGYTLTTEIRR 258 MP + + L I++ Sbjct: 57 MPDENAFDLLPRIKK 71
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.8 bits (103), Expect = 8e-07 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 4 NTSLSGISAANADLNVTSNNIANVNTTGFKESRAEFADMFQSTSYGLSRNAVGSGVRVSN 63 N ++SG++AA A LN SNNI++ N G+ A Q+ S + VG+GV VS Sbjct: 5 NNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA---QANSTLGAGGWVGNGVYVSG 61 Query: 64 VAQQFSQ 70 V +++ Sbjct: 62 VQREYDA 68 Score = 42.6 bits (100), Expect = 2e-06 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 15/155 (9%) Query: 264 MQLNVSGSTQYGEQFALRDTRQDGYASGKLNEISIDTSGVVFARYSNGADKPLGQVALSS 323 ++L +G+ + F L+ A ++ + D + + A + D + Sbjct: 396 LELTFTGTPAVNDSFTLKPVSD---AIVNMDVLITDEAKIAMASEEDAGDSDNRNGQ-AL 451 Query: 324 FVNPQGLQSQGNNMWA-ESY----------TSGAARTGAPNTSDLGQIESGSLESSTVDL 372 ++ G ++Y T+ + A + + Q+ + S V+L Sbjct: 452 LDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNL 511 Query: 373 TEQLVNMIVAQRNFQANSQMISTQDQVTQTIINIR 407 E+ N+ Q+ + AN+Q++ T + + +INIR Sbjct: 512 DEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/31 (29%), Positives = 19/31 (61%) Query: 5 LYVAMTGARASLQAQSTVSHNLANVDTVGFK 35 + AM+G A+ A +T S+N+++ + G+ Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYT 34
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 39.9 bits (93), Expect = 6e-06 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 219 LEGSNVNTVEELVSMIETQRAYEMNAKAISTTDAMLGYLNN 259 S VN EE ++ Q+ Y NA+ + T +A+ L N Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 37.6 bits (87), Expect = 4e-05 Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 5 LWVAKTGLDAQQTRMSVISNNLANTNTTGFKRDR 38 + A +GL+A Q ++ SNN+++ N G+ R Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 147 bits (373), Expect = 3e-46 Identities = 78/196 (39%), Positives = 108/196 (55%), Gaps = 9/196 (4%) Query: 39 VPVVAPVA-----QPTAGAIYAAGPGLNLYGDRRARDVGDLLTVNLVESTTASSTANTSI 93 VP PVA Q Y P L+ DRR R++GD LT+ L E+ +AS +++ + Sbjct: 40 VPGPTPVANGSIFQSAQPINYGYQP---LFEDRRPRNIGDTLTIVLQENVSASKSSSANA 96 Query: 94 SKKDATTMGAPTLLGAPLTVGGLNVLENSTSGDRSFAGKGNTAQSNRMQGSVTVTVMQRL 153 S+ T G T+ + G + SG +F GKG SN G++TVTV Q L Sbjct: 97 SRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVL 156 Query: 154 PNGNLVIQGQKNLRLTQGDELVQVQGIVRAADIAPDNTVPSSKVADARIAYGGRGAIAQS 213 NGNL + G+K + + QG E ++ G+V I+ NTVPS++VADARI Y G G I ++ Sbjct: 157 VNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEA 216 Query: 214 NAMGWLSRFFNSRLSP 229 MGWL RFF + LSP Sbjct: 217 QNMGWLQRFFLN-LSP 231
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (926), Expect = e-125 Identities = 156/368 (42%), Positives = 221/368 (60%), Gaps = 9/368 (2%) Query: 6 LSFRLLATAVALCAIAAPASAERIKDLAQVGGVRGNALVGYGLVVGLDGSGDRTSQAPFT 65 + + + L A A RIKD+A + R N L+GYGLVVGL G+GD +PFT Sbjct: 8 AAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFT 67 Query: 66 VQSLKNLLGELGVNVPANVNPQLKNVAAVAIHAELPPFAKPGQPIDITVSSIANAVSLRG 125 QS++ +L LG+ KN+AAV + A LPPFA PG +D+TVSS+ +A SLRG Sbjct: 68 EQSMRAMLQNLGITTQGG-QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRG 126 Query: 126 GSLLMAPLKGADGQVYAMAQGNLVVGGFGAQGKDGSRVSVNVPSVGRIPNGAIVERALPD 185 G+L+M L GADGQ+YA+AQG L+V GF AQG D + ++ V + R+PNGAI+ER LP Sbjct: 127 GNLIMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPS 185 Query: 186 VFAGTGEITLNLHQNDFTTVSRMVAAIDS----SFGAGTARAVDGVTVAVRSPTDPGARI 241 F + + L L DF+T R+ +++ +G A D +AV+ P Sbjct: 186 KFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKP-RVADLT 244 Query: 242 GLLSRLENVELSPGDAPAKVVVNARTGTVVIGQLVRVMPAAIAHGSLTVTISENTNVSQP 301 L++ +EN+ + D PAKVV+N RTGT+VIG VR+ A+++G+LTV ++E+ V QP Sbjct: 245 RLMAEIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQP 303 Query: 302 GAFSGGRTAVTQQSTITATSEGSRMFKFEGGTTLDQIVRAVNEVGAAPGDLVAILEALKQ 361 FS G+TAV Q+ I A EGS++ E G L +V +N +G ++AIL+ +K Sbjct: 304 APFSRGQTAVQPQTDIMAMQEGSKVAIVE-GPDLRTLVAGLNSIGLKADGIIAILQGIKS 362 Query: 362 AGALSAEL 369 AGAL AEL Sbjct: 363 AGALQAEL 370
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 130 bits (328), Expect = 5e-37 Identities = 64/140 (45%), Positives = 83/140 (59%), Gaps = 4/140 (2%) Query: 218 FVAKIWTHAQKAARELGVDPRALVAQAALETGWGRRGI--GNGGDSNNLFGIKATG-WSG 274 F+A++ AQ A+++ GV ++AQAALE+GWG+R I NG S NLFG+KA+G W G Sbjct: 152 FLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKG 211 Query: 275 DKVTTGTHEYVNGVKTTETADFRVYGSAEESFADYVRLLKNNSRYQPALQAGTDIKGFAR 334 T EY NG A FRVY S E+ +DYV LL N RY A+ + A+ Sbjct: 212 PVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYA-AVTTAASAEQGAQ 270 Query: 335 GLQQAGYATDPGYAAKIAAI 354 LQ AGYATDP YA K+ + Sbjct: 271 ALQDAGYATDPHYARKLTNM 290 Score = 71.3 bits (174), Expect = 5e-16 Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 16/137 (11%) Query: 4 AASPIDLNPSTKADPA-KIDKVSRQLEGQFAQMLVKSMRNASSGDPMFPGENQ-MFREMY 61 A S +L DPA I V+RQ+EG F QM++KSMR+A D +F E+ ++ MY Sbjct: 15 AQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLYTSMY 74 Query: 62 DQQMAKALTQGKGLGLSAMISKQLSGDTGGPALNTSL--------------NTAEAAKAY 107 DQQ+A+ +T GKGLGL+ M+ KQ++ + P +T N A + Sbjct: 75 DQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALSQLVQ 134 Query: 108 SLVAGKRDASLPLPTRD 124 V D SLP ++ Sbjct: 135 KAVPRNYDDSLPGDSKA 151
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 221 bits (564), Expect = 1e-66 Identities = 140/437 (32%), Positives = 219/437 (50%), Gaps = 8/437 (1%) Query: 2 SIMSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITD 61 S+++ S L A Q AL+T S+N+++ N GY+RQ A T +VGNG ++ Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 62 VGRVADQLAISRLLDSGGELSRLQQLSSLSNRVDALYSNTATNVAGLWSNFFDSTSAVSS 121 V R D ++L + + S L +++D + S + +++A +FF S + S Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVS 121 Query: 122 NASSTAERQSMLDSGNSLATRFKQLNGQMDGLSNEVNSGLTSSVDEVNRLTQQIAKLNGT 181 NA A RQ+++ L +FK + + +VN + +SVD++N +QIA LN Sbjct: 122 NAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQ 181 Query: 182 I----GSSAQNAAPDMLDQRDALVSKLVGYTGGTAVMQDGGFINVFTAGGQALVVATTSS 237 I G A + ++LDQRD LVS+L G +QDGG N+ A G +LV +T+ Sbjct: 182 ISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAR 241 Query: 238 KLTTVADPYQPSKLQVAMQTQGQNVSLSANSL--GGQIGGLLEFRSSVLEPTQAELGRLA 295 +L V PS+ VA L G +GG+L FRS L+ T+ LG+LA Sbjct: 242 QLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLA 301 Query: 296 VGMASTFNAGHRQGMDLYGAMGGNFFNIGSPTTAANPSNTGSASLSASFSNMSAVDGQNV 355 + A FN H+ G D G G +FF IG P N N G ++ A+ ++ SAV + Sbjct: 302 LAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDY 361 Query: 356 TLSFDGTNWKATNASTGSAVPMTGTGTAANPLVLNGVSMVVGGTPASGDKFLLQPTAGLA 415 +SFD W+ T ++ + T T A + +G+ + GTPA D F L+P + Sbjct: 362 KISFDNNQWQVTRLASNTT--FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 419 Query: 416 GSLSVAITDPSRIAAAT 432 ++ V ITD ++IA A+ Sbjct: 420 VNMDVLITDEAKIAMAS 436 Score = 82.7 bits (204), Expect = 1e-18 Identities = 38/105 (36%), Positives = 55/105 (52%) Query: 517 AGSSDNGNAKLLAKIDDAKALSGGTVTLNGALSGLTTSVGSAARAANYSADAQKVINDQA 576 AG SDN N + L + GG + N A + L + +G+ S+ Q + Q Sbjct: 440 AGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQL 499 Query: 577 QASRDSISGVNLDEEAANMLKLQQAYQAAAQMISTADTIFQAILG 621 + SISGVNLDEE N+ + QQ Y A AQ++ TA+ IF A++ Sbjct: 500 SNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLAGELLIN#Flagellin signature. Length = 507 Score = 53.1 bits (127), Expect = 9e-10 Identities = 56/349 (16%), Positives = 107/349 (30%), Gaps = 6/349 (1%) Query: 4 RISTSMMYSQSVASMGAKQARLSQIEAQLASGQRLVTAKDDPVAAGTAVGLDRALAAITR 63 I+T+ + + ++ Q+ LS +L+SG R+ +AKDD A + +T+ Sbjct: 3 VINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQ 62 Query: 64 FGENANNVQNRLGLQENALSQAGDKMARVTELAVQANNSSLSPDDRKAIAAELTALRDSM 123 NAN+ + E AL++ + + RV EL+VQA N + S D K+I E+ + + Sbjct: 63 ASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEI 122 Query: 124 VSLANSTDGTGRYLFGGTADGSAPFIKSSG---NVTYNGDQTQKQVEVAPDTFVSDTLPG 180 ++N T G + + G + + + Sbjct: 123 DRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATV 182 Query: 181 SEIFMRIRTGDGTVDAHANAANTGTGLLLDFSRDTSTGSWNGASYSVQFTAANTYEVRDS 240 ++ + G A + +T V Sbjct: 183 GDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 241 TNALVSTGTYKEG--QDINAAGVRMRISGAPAVGDSFQIGASGSKDVFSTID-DMVGALN 297 N V + A + I G G + + D + D + + Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTT 302 Query: 298 SDTLTAPQKASMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANS 346 + + I +++ SSK + G N Sbjct: 303 INGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNE 351 Score = 36.2 bits (83), Expect = 2e-04 Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 1/269 (0%) Query: 127 ANSTDGTGRYLFGGTADGSAPFIKSSGNVTYNGDQTQKQVEVAPDTFVSDTLPGSEIFMR 186 AN T D ++G + DTF + + Sbjct: 232 ANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKT 291 Query: 187 IRTGDGTVDAHANAANTGTGLLLDFSRDTSTGSWNGASYSVQFTAANTYEVRDSTNALVS 246 G+G V N + + + + S +T+ + Sbjct: 292 GNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNE 351 Query: 247 TGTYKEGQDINAAGVRMRISGAPAVGDSFQIGASGSKDVFSTIDDMVGALNSDTLTAPQK 306 + + + NA +I+ A + G + + D + TL Sbjct: 352 SAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTAS-GVSTLINEDA 410 Query: 307 ASMINTLQSSMRDIAQASSKMIDARASGGAQLSAIDNANSLLESNEVTLKTTLSSIRDLD 366 A+ + + + I A SK+ R+S GA + D+A + L + L + S I D D Sbjct: 411 AAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDAD 470 Query: 367 YASAIGQYQLEKASLQAAQTIFQQMQSSS 395 YA+ + + QA ++ Q Sbjct: 471 YATEVSNMSKAQILQQAGTSVLAQANQVP 499
>FLAGELLIN#Flagellin signature. Length = 507 Score = 124 bits (313), Expect = 1e-33 Identities = 120/400 (30%), Positives = 182/400 (45%), Gaps = 10/400 (2%) Query: 2 AQVINTNVMSLNAQRNLNTNSSSLALSIQQLSSGKRITSFAVDAAGGAIAERFTTQIRGL 61 AQVINTN +SL Q NLN + SSL+ +I++LSSG RI S DAAG AIA RFT+ I+GL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 DVASRNANDGISLSQTAEGAMQEIGNNLQRIRELSVQSANATNSSTDREALNSEVKQLTS 121 ASRNANDGIS++QT EGA+ EI NNLQR+RELSVQ+ N TNS +D +++ E++Q Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 EIDRVANQTSFNGTKLLDGSFSGALFQVGADAGQTIGINSIADANIDTLGRANFAAAVSG 181 EIDRV+NQT FNG K+L QVGA+ G+TI I + ++ +LG F Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGETITI-DLQKIDVKSLGLDGFNVNGPK 178 Query: 182 AGVTGTATASGSVSGISLSFKDASGSAKSITIADVKVGAGDTAADVNKKVASAINDKLDQ 241 G +S ++ + + + V +K +A N +L Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238 Query: 242 TGMYASIKSDGSVQIESLKAGQDFTSLSAG--------TSSAAGITVGAGITTASAASGS 293 + D +S + +++ T G+T T + +G Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298 Query: 294 TASTLGSLDISTFSGAQQALEIVDKALTTVNSSRADMGAVQNRFTSTIANLSATSENLSA 353 ++T+ ++ A A T +S V +FT + +++ Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL 358 Query: 354 SRSRIADTDYAKTTAELTRTQILQQAGTAMLAQAKSVPQN 393 + + T T + + + + Sbjct: 359 EANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKT 398 Score = 93.2 bits (231), Expect = 9e-23 Identities = 67/301 (22%), Positives = 121/301 (40%), Gaps = 3/301 (0%) Query: 99 SANATNSSTDREALNSEVKQLTSEIDRVANQTSFNGTKLLDGSFSGALFQVGADAGQTIG 158 ++ A + T + +V + + N L + A A Sbjct: 210 NSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Query: 159 INSIADANIDTLGRANFAAAVSGAGVTGTATASGSVSGISLSFKDASGSAKSITIADVKV 218 D G +G G + + + ++L+ D + A ++ A ++ Sbjct: 270 KGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQS 329 Query: 219 GAGDTAADVNKKVASAINDKLDQTGMYASIKSDGSVQIESLKAGQDFTSLSAGTSSAAGI 278 + VN + K + + ++ + + ++ + Sbjct: 330 SKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVN---GAEYTANAAGDKV 386 Query: 279 TVGAGITTASAASGSTASTLGSLDISTFSGAQQALEIVDKALTTVNSSRADMGAVQNRFT 338 T+ + ++ + + L +D AL+ V++ R+ +GA+QNRF Sbjct: 387 TLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFD 446 Query: 339 STIANLSATSENLSASRSRIADTDYAKTTAELTRTQILQQAGTAMLAQAKSVPQNVLSLL 398 S I NL T NL+++RSRI D DYA + +++ QILQQAGT++LAQA VPQNVLSLL Sbjct: 447 SAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506 Query: 399 Q 399 + Sbjct: 507 R 507
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.8 bits (176), Expect = 6e-17 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 9/160 (5%) Query: 2 RVIIVDDHTLVRAGLSRLLQTFAGIDVVGEASNAQQALDMTSLHRPDLVLMDLSLPGRSG 61 +++ DD +R L++ L + AG DV SNA + DLV+ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQAL-SRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 LDAMTDVLRAAPRTHVVMMSMHDDPVHVRDALDRGAVGFVVKDAAPLELELALRAAAAGQ 121 D + + +A P V++MS + + A ++GA ++ K EL + A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA---- 118 Query: 122 VFLSPQISSKMIAPMLGREKPVGIAALSPRQREILREIGR 161 + + + + + S +EI R + R Sbjct: 119 ---LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.6 bits (134), Expect = 2e-12 Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 1 MSKLTVLLVDDHEGFINAAMRHFRKVEWLNIVGSAANGLEAIERSESLRPNVVLMDLAMP 60 M+ T+L+ DD + + + V +N + ++V+ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMGGLQATRLIKTQDDPPYIVIASHFDDAEHREHALRAGADNFVSKLSYIQEVMPILE 118 + IK +++ S + A GA +++ K + E++ I+ Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 434 bits (1117), Expect = e-151 Identities = 175/489 (35%), Positives = 252/489 (51%), Gaps = 16/489 (3%) Query: 1 MSESRILLIDSDAVRAERTVSLLEFMDFNPRWVTDGADINPGRHRHDEWMAVMVGSAQDA 60 M+ + IL+ D DA L ++ R ++ A + R ++V Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLW--RWIAAGDGDLVVTDVVMP 58 Query: 61 -AQADKFFDWLADAKLPPPVLLMEGSPTAFAQAHGLHEANVWALDTPLRHAQLEALLRRA 119 A + A+ PVL+M T + L P +L ++ RA Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 120 S--LKRLDAEHQAGVQQDSGPTGNSEAVTRLRRLIDQVAAFDTTVLVLGESGTGKEVVAR 177 KR ++ + Q G S A+ + R++ ++ D T+++ GESGTGKE+VAR Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 178 AIHQHSPRRDGPFVAINCGAIPPDLLESELFGHEKGAFTGALTTRKGRFEMAEGGTLLLD 237 A+H + RR+GPFVAIN AIP DL+ESELFGHEKGAFTGA T GRFE AEGGTL LD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 238 EIGDMSLPMQVKLLRVLQERSFERVGGGQTIRCNVRVIAATHRNLETRISDGQFREDLFY 297 EIGDM + Q +LLRVLQ+ + VGG IR +VR++AAT+++L+ I+ G FREDL+Y Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 298 RLNVFPIEMPALRERVDDLAMLVQTIAVQLARTGRGEVRFAEEALQALRSYNWPGNVREL 357 RLNV P+ +P LR+R +D+ LV+ Q + G RF +EAL+ ++++ WPGNVREL Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVREL 358 Query: 358 TNLVERLAVLHPGGLVRVQDLPARYRGDFASAIPVELPPEPALLAAPVQVTDLPSNVVTL 417 NLV RL L+P ++ + + R + P ++ Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEI-----------PDSPIEKAAARSGSLSISQA 407 Query: 418 PPKTADAEPATAASLPDDGIDLRGHMANIELALINEALERTQGVVAHAAQLLGLRRTTLV 477 + A+ +A +E LI AL T+G AA LLGL R TL Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 478 EKLRKYGID 486 +K+R+ G+ Sbjct: 468 KKIRELGVS 476
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 4e-29 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 15/254 (5%) Query: 13 LQGKRILVTGASSGIGRQIALSCAQIGAQLVITGRNEGR--LAETFALLEGTGHAQVIAN 70 ++GK +TGA+ GIG +A + A GA + N + + E A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 71 LDKQEDIDHLVT----SVGVLDGVAHAAGIARLAPFRMINRAHLDETFASNVYAPLLLTR 126 + ID + +G +D + + AG+ R ++ + TF+ N +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 GLLAKKRINANGSILFISAVGSHIGPVATAAYSASKAALLGAMRTLALEVAKHGIRANCI 186 + +GSI+ + + + + + AAY++SKAA + + L LE+A++ IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 187 VPGYVRTPMLEGL--KQSG------GSIDEHAKLTPLG-LGEPEDVAYAAVFYLSDASRW 237 PG T M L ++G GS++ PL L +P D+A A +F +S + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 238 VTRNYFLVDGGLTV 251 +T + VDGG T+ Sbjct: 246 ITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (250), Expect = 1e-27 Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 14/257 (5%) Query: 8 AFSLEGKTILITGASSGLGQEIALTCARRGGRLVISGRDSERLQQTHAQLAGNGHVQVQ- 66 A +EGK ITGA+ G+G+ +A T A +G + + E+L++ + L Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 67 -ADL----TVSEDRERLVQASQRIDGVVHCFGGQMLSPIRQLKEELMTRMYQVHFLAPVM 121 AD+ + E R+ + ID +V+ G I L +E + V+ Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 122 LTQRLLQANAINAQGSIVFMLSTSAHIGTRGVGPYSAMKSGLLGIIRCLALEQAKHRVRV 181 ++ + + GSIV + S A + + Y++ K+ + +CL LE A++ +R Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 182 NGISPSAVPTP---RLW----GEDNRLNEMLNQQRARHPLG-LGTPHDVANAAVYLLADA 233 N +SP + T LW G + + L + PL L P D+A+A ++L++ Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 234 SRWVTGTSLVMDGGAVL 250 + +T +L +DGGA L Sbjct: 243 AGHITMHNLCVDGGATL 259
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 62.0 bits (150), Expect = 3e-16 Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 22 AGAQGTPATQAPSFSETLRGAIGGVNEAQQKAGALSKAFEMGDPNADLARVMVASQQSQV 81 A AQ + SF+ L A+ +++ Q A ++ F +G+P L VM Q++ V Sbjct: 20 ARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASV 79 Query: 82 AFRATVEVRNRLVQAYQDVMNMPL 105 + + ++VRN+LV AYQ+VM+M + Sbjct: 80 SMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 351 bits (903), Expect = e-117 Identities = 189/574 (32%), Positives = 302/574 (52%), Gaps = 43/574 (7%) Query: 16 KAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAAD 75 K +W +R+R+ ++ ++ + AVA +A+ W++ P Y++L++ L ++ Sbjct: 11 KPLEWLNRLRANP---RIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVA 67 Query: 76 LLRIAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQF 135 L IPY+ G+GAI VP D++++ RL+LA GL K GFEL++++ FG+SQF Sbjct: 68 QLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLP-KGGAVGFELLDQEK-FGISQF 125 Query: 136 VENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGL 195 E YQ ALE EL+RTI TL PV+ ARVHLA+PKPS F R++ SASV + L G+ L Sbjct: 126 SEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRAL 185 Query: 196 ERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSY 255 + Q+ A+V+LV+S++ + P VT+VDQSG +L+ ++ + AQ + ES Sbjct: 186 DEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLN-DAQLKFANDVESRI 244 Query: 256 NQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYN----GEPAKLRSEQVND-TSTT 310 +RI +L P+ G G V+ + + +DF+ E+ E Y+ A LRS Q+N Sbjct: 245 QRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVG 304 Query: 311 ATGPQGPPGATSNSPGQP-------PAPAAAGAPGTPAAANGQATAAAAPTESSKSATRN 363 A P G PGA SN P P P A TP + + +A P + ++ T N Sbjct: 305 AGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSN 364 Query: 364 YELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVG 423 YE+DRT++HT+ G I+R+SVAV+++ K PLTA ++ +IE L ++A+G Sbjct: 365 YEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMG 420 Query: 424 FDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQNGLRLLVGAVVVLALLF----GVV 479 F RGDT++V+N+PF G E P W + + L ++VL + + V Sbjct: 421 FSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAG-RWLLVLVVAWILWRKAV 479 Query: 480 RPTLRQLTGVTPIKEKQRKGGNDGTPQNADVRMVDDEDSLLPQMGEDTASIGQERKPAIA 539 RP L + ++Q + + + +VR+ DE Q+R+ Sbjct: 480 RPQLTRRVEEAKAAQEQAQVRQETE-EAVEVRLSKDEQL-------------QQRRANQR 525 Query: 540 LPDAYEERMRVAREAVKADSKRVAQVVKGWVASE 573 L E + RE D + VA V++ W++++ Sbjct: 526 LG--AEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 307 bits (789), Expect = e-106 Identities = 104/329 (31%), Positives = 200/329 (60%) Query: 1 MSGVQRAAVLLLSLGESDAAEVLKHMDPKEVQKIGIAMATMTGISRDQVEKVMDDFNGEL 60 ++G Q+AA+LL+S+G +++V K++ +E++ + +A + I+ + + V+ +F + Sbjct: 15 LTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELM 74 Query: 61 AGKTSLGVGADDYIRNVLIQALGADKAGGLIDRILLGRNTTGLDTLKWMDPRAVADLVRN 120 + + G DY R +L ++LG KA +I+ + + + ++ DP + + ++ Sbjct: 75 MAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQ 134 Query: 121 EHPQIIAIVMAHLDSDQAAEALKLLPERTRADVLLRIATLDGIPPNALSELNDIMERQFA 180 EHPQ IA+++++LD +A+ L LP + +V RIA +D P + E+ ++E++ A Sbjct: 135 EHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLA 194 Query: 181 GNQNLKSSNVGGIKVAANILNFLDTGSDQGVLGEIGKIDADLAGKIQDLMFVFDNLVDLD 240 + ++ GG+ I+N D +++ ++ + + D +LA +I+ MFVF+++V LD Sbjct: 195 SLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLD 254 Query: 241 DRGLQTLLREVSGERLGLALRGADVKVREKITRNMSQRAAEILLEDMEARGPVRLADVEA 300 DR +Q +LRE+ G+ L AL+ D+ V+EKI +NMS+RAA +L EDME GP R DVE Sbjct: 255 DRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEE 314 Query: 301 AQKEILTIVRRLADEGAISLGGAGAEAMV 329 +Q++I++++R+L ++G I + G E ++ Sbjct: 315 SQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 45.6 bits (107), Expect = 3e-08 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 51 QEGFARGHAEGFAQGQSEVRRLTAQIDGILDNFTRPLARLENEVVGALGELAVRIAGQLV 110 QEG A+G +G A+ +S+ + A++ ++ F L L++ + L ++A+ A Q++ Sbjct: 73 QEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 111 GRAYQADPQLLAELVGEAVDAVGGAGREVEVRLHPDDITALLPHLAPSSTT---RVAPDM 167 G+ D L + + + + + ++R+HPDD+ + L + + R+ D Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 168 SLSRGDLRVHAESVRIDGTLDARLRAALETVMRKSGAGL 206 +L G +V A+ +G LDA + + + R + G+ Sbjct: 193 TLHPGGCKVSAD----EGDLDASVATRWQELCRLAAPGV 227
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 26.3 bits (57), Expect = 0.045 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 4/140 (2%) Query: 1 MMQSKRIDPLLRRAQEQEDKVARDLAERQRTLETNQSRLEELRRYVEEYANSQMAGTSAV 60 M + + L A+++ + AR L E +R + + +L+ L Y EY N+ + SA Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 ALTNR----RAFLDRLDSAVLQQAQTVQSNIAKVEAERTRLLLASREKQVLEQLAASYRA 116 +NR + F+ L+ A+ Q Q + KV+ + Q + L Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 117 QENKVIERRDQREMDDLGAR 136 R DQ++MD+ R Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 51.4 bits (122), Expect = 3e-09 Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 6/176 (3%) Query: 257 AAKALEPAADDSTAPAAPDAPAFALPTTTAPALSRLQDAAPIFSASPTPTPDLGSDNFDD 316 A+ L P ++ + A + + +P ++ Q A+P + LGS + Sbjct: 183 PAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQ 242 Query: 317 AIGARMSWLADQKIGHAHIKVTPNEMGPVEVRLHLDGDRVNASFTAANADTRQALEQSLP 376 ++ +S Q A +++ P ++G V++ L +D ++ + + R ALE +LP Sbjct: 243 SLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALP 302 Query: 377 RLREMLGQNGFQLGQADV------GQQQQHPSGNRTGGNGNGNGLTLDDSPPVGIP 426 LR L ++G QLGQ+++ GQQQ ++ N L +D + +P Sbjct: 303 VLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVP 358
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 255 bits (653), Expect = 2e-85 Identities = 91/327 (27%), Positives = 162/327 (49%), Gaps = 14/327 (4%) Query: 3 VSDLLSQDEIDALLHGVDSGAVNTEPEPLPGEARQ-----YDLSSQDRIIRGRMPTLEMV 57 ++++LSQDEID LL + SG + E + YD D+ + +M TL ++ Sbjct: 1 MTEVLSQDEIDQLLTAISSG--DASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLM 58 Query: 58 NERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIV 117 +E FARL L +R + V +D + + E++ S+ P+ L +I PL+G ++ Sbjct: 59 HETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLE 118 Query: 118 FEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVDL 177 +P++ F+++D FGG G+ R+ T E V++ ++ + A+++E+W V+D+ Sbjct: 119 VDPSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRP 176 Query: 178 EYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAG--IQ 235 E NP FA IV P E VV+ ++ G ++ +PY +EPI L + Sbjct: 177 RLGQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFS 236 Query: 236 SDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDIL---PIDLPAQVP 292 S R + +LR++L T ++ + + + S R+S+R + GL+VGDI+ + Sbjct: 237 SVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFV 296 Query: 293 LCVEEIPLFTGEFGVSNGNNAVKITAV 319 L + F + GV A +I Sbjct: 297 LSIGNRKKFLCQPGVVGKKIAAQILER 323
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 114 bits (286), Expect = 3e-36 Identities = 50/90 (55%), Positives = 74/90 (82%) Query: 22 DQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTL 81 D + A ++D+I+D+PV L++E+GR R+ I+ LL+L QGSVV L+ AGEPLD+ +NG L Sbjct: 46 DVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYL 105 Query: 82 IAHGEVVVINDRFGIRLTDVVSPSERIRRL 111 IA GEVVV+ D++G+R+TD+++PSER+RRL Sbjct: 106 IAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 240 bits (615), Expect = 7e-82 Identities = 123/228 (53%), Positives = 162/228 (71%), Gaps = 1/228 (0%) Query: 51 PAGSNQLPSLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLR 110 P QLP + + + G Q SLP+QTL+ +T++T +P++LL++T+FTRI IV GLLR Sbjct: 17 PLAFAQLPGITSQPL-PGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLR 75 Query: 111 QALGTGQTPSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLR 170 ALGT P NQVLLGL++FLT +M PV K++ QP+ +I A QPLR Sbjct: 76 NALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLR 135 Query: 171 AFMLAQIRETDLMTFAGMAGDGKYVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVI 230 FML Q RE DL FA +A G GP+AVP +L+ ++VTSELKTAF+IGF IFIPF+I Sbjct: 136 EFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLI 195 Query: 231 IDLVVASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278 IDLV+ASVLM++GMMM+ P I+ PFK++LF+LVDGW L+VG+LA SF Sbjct: 196 IDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 44.0 bits (104), Expect = 1e-09 Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 13 GLVTVLWIAGPMLLAVLVVGVVIGVVQAATQLNEPTISFVAKAVALTATLFATGSMLLGH 72 L VL ++G + ++G+++G+ Q TQL E T+ F K + + LF Sbjct: 11 ALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSGWYGEV 70 Query: 73 LVEFTIALF 81 L+ + + Sbjct: 71 LLSYGRQVI 79
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 123 bits (311), Expect = 2e-36 Identities = 79/239 (33%), Positives = 129/239 (53%), Gaps = 2/239 (0%) Query: 23 WTMLRTGALLTAMPLIGTRTVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSIAR 82 W +LR AL++ P++ R+VP RV++ LA + +AP LP L++ + Sbjct: 18 WPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAV-Q 76 Query: 83 ELAVGASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYIGFGLL 142 ++ +G ++GF ++ F A AGE++ GLSFA DP + V+A+ + LL Sbjct: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 Query: 143 FFAANGHLAVIALLVDSYKALPIGTALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAML 202 F NGHL +I+LLVD++ LPIG ++ AF + I GL LALP++ +L Sbjct: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALT-KAGSLIFLNGLMLALPLITLLL 195 Query: 203 AVNLAFGALAKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPPVQRMFDTAFDAARKL 261 +NLA G L + AP L+ +G PLT+ +G+ L+++ AP + +F F+ + Sbjct: 196 TLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADI 254
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.0 bits (80), Expect = 0.002 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 14/125 (11%) Query: 762 LLLAVVAVIALLRWRTAKLLRRKRELEQLVAERTAELEQDKRDLEAARAEL-SLKATHDE 820 A A I L A L K +LE A + +RDL+A+R L+A H + Sbjct: 275 FSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQK 334 Query: 821 LTGLLNRAGILAALREML---LHAARSGGPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGV 877 L I A R+ L L A+R A ++ +H KL + +A + Sbjct: 335 LEEQN---KISEASRQSLRRDLDASRE----AKKQLEAEHQKLEEQ---NKISEASRQSL 384 Query: 878 GRRMD 882 R +D Sbjct: 385 RRDLD 389
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 349 bits (898), Expect = e-121 Identities = 104/344 (30%), Positives = 184/344 (53%), Gaps = 2/344 (0%) Query: 8 GERRELPTEKRLREAREQGNIPQSRELSTAAVFGAGVFALMALARGIGDGATAWMKTALS 67 GE+ E PT K++R+AR++G + +S+E+ + A+ A LM L+ + + M + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM--LIP 60 Query: 68 PDPTMRENPMALFGHFGDLLLQLLWVMLPLIGICLAAGLAGPLLMSGLHFSGKAIMPDLT 127 + + AL ++LL+ ++ PL+ + +A ++ G SG+AI PD+ Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 128 KLNPANGLKRMWGSNSLAELVKSVLRLLFVGLAASFCISKSLPGLRSLVSQPLEQAVGNG 187 K+NP G KR++ SL E +KS+L+++ + + I +L L L + +E Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 188 LDFTKSLLFYTAGALVLLAAIDAPYQKWNWMRKLKMTREEIKREMKESEGSPEVKGRIRQ 247 + L+ V+++ D ++ + ++++LKM+++EIKRE KE EGSPE+K + RQ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 248 MQMQMSQRQMMEAVPKADVVLMNPTHYAVALKYEGGKMRAPIVVAKGVDEMAFRIREAGE 307 ++ R M E V ++ VV+ NPTH A+ + Y+ G+ P+V K D +R+ E Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 308 QHRVAIVTAPPLARALYREAQIGKEIPVRLYSVVAQVLSYVYQL 351 + V I+ PLARALY +A + IP A+VL ++ + Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQ 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 4e-25 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 2 RILIVDDFSTMRRIVKNLLGDLGFTNTAEAEDGNSALAALRAGPFDFVVTDWNMPGMTGI 61 IL+ DD + +R ++ L G+ + + + AG D VVTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DLLRNIRADAKLKHLPVMMVTAEAKREQIIEAAQCGVNGYIIKPF 106 DLL I+ LPV++++A+ I+A++ G Y+ KPF Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>PF06580#Sensor histidine kinase Length = 349 Score = 44.1 bits (104), Expect = 1e-06 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 53/136 (38%) Query: 284 LVRNAIDHGIESPALREATGKPRSGHVRLSAQQEGDYVSIEIQDDGAGIDPERLREIARN 343 LV N I HGI P+ G + L ++ V++E+++ G+ Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKN-------- 306 Query: 344 KGLIDAEAAARLSTDECLHLIFMPGFSTKVEVTDISGRGVGMDVVQSRIRELSG---QIQ 400 G G+ V+ R++ L G QI+ Sbjct: 307 ---------------------------------TKESTGTGLQNVRERLQMLYGTEAQIK 333 Query: 401 IQSELGRGSRFMIRVP 416 + + G+ M+ +P Sbjct: 334 LSEKQGKV-NAMVLIP 348
>PF05043#Transcriptional activator Length = 493 Score = 33.0 bits (75), Expect = 0.002 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%) Query: 68 IAGLLYLKHAYDLSDEAVCERWLENPYWQFFTGEVVFQTCLPCDPSSLTRWRQRLGEAGM 127 +A ++ L +E VC+ ++ FF E +F C+ D S + + L + Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKD-SYVEKSYHLLSDFID 299 Query: 128 E-------------ELLAHTINTAH 139 + L+ H NTAH Sbjct: 300 QISVKYQIEIENKDNLIWHLHNTAH 324
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 8e-23 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 ARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGI 62 A ILV DD A++R +++ AL+ AG+ V + A + VVTDV MP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 SLIRELRQLPDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVLG 121 L+ +++ P+L+++ ++ + GA +L KPF+ +LI + + L Sbjct: 64 DLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>PF06580#Sensor histidine kinase Length = 349 Score = 44.9 bits (106), Expect = 6e-07 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 50/133 (37%) Query: 397 LVRNSIDHGLEMPDARRASGKDETGTITLAASHQGGHIVIEVSDDGRGLNRAKILEKAAE 456 LV N I HG+ + G I L + G + +EV + G + Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------ 308 Query: 457 RGIAVPDNPTDAQVWDLIFAPGFSTADAVTDLSGRGVGMDVVRRNIQGLGGE---VQLES 513 G G+ VR +Q L G ++L Sbjct: 309 --------------------------------ESTGTGLQNVRERLQMLYGTEAQIKLSE 336 Query: 514 NAGSGTRVLIRLP 526 G ++ +P Sbjct: 337 KQG-KVNAMVLIP 348
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 26.8 bits (59), Expect = 0.029 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 99 DTFQRLSHDVPLSEATDAIRSII 121 FQ + +PLS + D IR I+ Sbjct: 204 IVFQTAARFLPLSHSIDLIRPIM 226
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 30.7 bits (69), Expect = 0.002 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Query: 10 RGYTAVQLLIVMAIVGIGAAIGIPSFKSLIEWQRATTRVHVLTAHLAMARSFAVTQGAPV 69 RG+T +++++++ ++G+ A + + +F + + A + A L + + G Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFPASRD-DSAAQTLARFEAQLRFVQQRGLQTGQFF 62 Query: 70 SICPSTDGVRCRTDR 84 GV DR Sbjct: 63 -------GVSVHPDR 70
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 53.7 bits (129), Expect = 4e-12 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 11 LSRQLRQRAGTGGFTLIELMIVVAIIGILAAVAYPSYADYVRKSRRAQAKADLVEYSQLL 70 + +QR GFTL+E+M+V+ IIG+LA++ P+ K+ + +A +D+V L Sbjct: 1 MRATDKQR----GFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENAL 56 Query: 71 ERSHTTNNTYAS 82 + N+ Y + Sbjct: 57 DMYKLDNHHYPT 68
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.1 bits (65), Expect = 0.020 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 13 GISLVEMMIAMVIGLVLMLGVIQVFSASRTASMLAEGSARAQENGRFAMDFLQRDIRMAG 72 G +L+EMM+ +++ V V+ F ASR S A+ AR + RF + + G Sbjct: 5 GFTLLEMMLILLLMGVSAGMVLLAFPASRDDS-AAQTLARFEAQLRFVQQRGLQTGQFFG 63
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 441 bits (1137), Expect = e-140 Identities = 231/1044 (22%), Positives = 426/1044 (40%), Gaps = 73/1044 (6%) Query: 13 LTLFAAALILIGGIVAFVGFPSQEEPSVTVRDTLVSVAYPGMPSEQVENLLARPVEAQLR 72 A ++++ G +A + P + P++ VS YPG ++ V++ + + +E + Sbjct: 11 FAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMN 70 Query: 73 ELAGIKRIV-TTVRPGSAIVQLTAYDDVRDLPALWQRVRAKAAEAGAQLPAGTLGPFVDD 131 + + + T+ GS + LT D +V+ K A LP + Sbjct: 71 GIDNLMYMSSTSDSAGSVTITLTFQSGT-DPDIAQVQVQNKLQLATPLLPQEVQQQGISV 129 Query: 132 DFGRVS---VASIAVTAPGFSMSEMRGPL-RRMREQLYGVPGVEQVKVFGLQDERVYVSF 187 + S VA PG + ++ + +++ L + GV V++FG + + Sbjct: 130 EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQYAMRIWL 188 Query: 188 DRARLLASGLTPSSVMAQLRAQNVVGSGGQV----AVSG--LALTVATSGEIRTPEQLRD 241 D L LTP V+ QL+ QN + GQ+ A+ G L ++ + PE+ Sbjct: 189 DADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGK 248 Query: 242 VLLSVPGASVGGAREVTLGELAQVQVMQADPPQSAAVYQGQPAVVVSVSMQPGSNIADVG 301 V L V V L ++A+V + + A G+PA + + + G+N D Sbjct: 249 VTLRV----NSDGSVVRLKDVARV-ELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 302 KALRAKLDDTARQLPVGFTQHVVSFQADVVEREMGKMHHVMGETIVIVMAVVMLFLG-WR 360 KA++AKL + P G V+ + ++ + E I++V V+ LFL R Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 361 TGLIVGAIVPLTIFASLIVMRVLDVELQTVSIAAIILALGLLVDNGIVIAEDIERRLV-A 419 LI VP+ + + ++ + T+++ ++LA+GLLVD+ IV+ E++ER ++ Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 420 GEERRQACIDAGRTLATPLLTSSLVIVLAFSPFFFGQTSTNEYLRSLAIVLGVTLLGSWL 479 ++A + + L+ ++V+ F P F ST R +I + + S L Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 483 Query: 480 LSITVTPLLCMYFAKVHVTKRDEAESRFYR-----------GYRRVIERVLQHKALFIGA 528 +++ +TP LC K + E + F+ Y + ++L ++ Sbjct: 484 VALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLI 543 Query: 529 MAAMLAVAITVLVSIPYDFLPKSDRLQFQMPVTLQAGSDARETLRTVSELSRW-LGDRRA 587 A ++A + + + +P FLP+ D+ F + L AG+ T + + +++ + L + +A Sbjct: 544 YALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKA 603 Query: 588 NPEVVDSIGYVADGGPRIVLGLNPPLPAANQAYFTVSVRPGTD-------IDAVIARVRT 640 N E V ++ + G A N VS++P + +AVI R + Sbjct: 604 NVESVFTVNGFSFSGQ-----------AQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 641 H---VRSHFPALRAEPKRFSLG-ATEAGMAVYRVVGPDEAVLRSSAAAIARALRAVPGTV 696 +R F P LG AT + G L + + P ++ Sbjct: 653 ELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 697 -DVQDDWQARIPRYVVQVDQLKARRAGVSSEDIAQALQARYSGVDATLIRDDGTDVPVIV 755 V+ + ++ ++VDQ KA+ GVS DI Q + G D G + V Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYV 772 Query: 756 RGSAQERAANGNPAD--TLVYPQVGSAPVPLAAIATVLRDSEPSAIQRRNLSRAITVTAR 813 + A+ R P D L VP +A T ++R N ++ + Sbjct: 773 QADAKFR---MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGE 829 Query: 814 NLQ----LTATEIVERLSAPIAALKLPPGYSVEIGGELEDSAEANQALLHYMPHALGAIL 869 A ++E L++ KLP G + G + + + + Sbjct: 830 AAPGTSSGDAMALMENLAS-----KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 870 LLFVWQFNSFRKLCIVLSAVPFVLIGAALALVLTGYPFGFMATFGLLALAGIIVNNAVLL 929 L + S+ V+ VP ++G LA L GLL G+ NA+L+ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 930 LERI-EAELADGLPRREAVVAAAVKRLRPIVMTKLTCIVGLVPLMLFAGP---LWTGMAI 985 +E + +G EA + A RLRPI+MT L I+G++PL + G + I Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 986 TMIGGLALGTLVTLGLIPILYDLL 1009 ++GG+ TL+ + +P+ + ++ Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVVI 1028 Score = 99.1 bits (247), Expect = 4e-23 Identities = 88/423 (20%), Positives = 159/423 (37%), Gaps = 30/423 (7%) Query: 618 QAYFTVSVRPGTDIDAVIARVR---THVRSHFPALRAEPKRFSLGATEAGMAVYRVVGPD 674 T++ + GTD D +V+ P + ++ + + V V + Sbjct: 87 SVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDN 146 Query: 675 EAVLRSS-----AAAIARALRAVPGTVDVQDDWQARIPRYVVQVDQLKARRAGVSSEDIA 729 + A+ + L + G DVQ R + D L ++ D+ Sbjct: 147 PGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKY--KLTPVDVI 204 Query: 730 QALQARYSGVDATLIRDDGTDVPVIVRGSAQERAANGNPAD----TLVYPQVGSAPVPLA 785 L+ + + A + + S + NP + TL GS V L Sbjct: 205 NQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGS-VVRLK 263 Query: 786 AIATVLRDSEP-SAIQRRNLSRAITVTARNLQLTAT-EIVERLSAPIAALK--LPPGYSV 841 +A V E + I R N A + + + + + A +A L+ P G V Sbjct: 264 DVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKV 323 Query: 842 EIGGELEDSAEANQALLHYMPHAL-GAILLLFVWQF---NSFRKLCIVLSAVPFVLIGAA 897 D+ Q +H + L AI+L+F+ + + R I AVP VL+G Sbjct: 324 LY---PYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTF 380 Query: 898 LALVLTGYPFGFMATFGLLALAGIIVNNAVLLLERIEAELAD-GLPRREAVVAAAVKRLR 956 L GY + FG++ G++V++A++++E +E + + LP +EA + + Sbjct: 381 AILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQG 440 Query: 957 PIVMTKLTCIVGLVPLMLFAG---PLWTGMAITMIGGLALGTLVTLGLIPILYDLLFGLR 1013 +V + +P+ F G ++ +IT++ +AL LV L L P L L Sbjct: 441 ALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPV 500 Query: 1014 MRR 1016 Sbjct: 501 SAE 503
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 3/134 (2%) Query: 67 GRLSAVLVDVGDRVTRGQVLARLDDEPLRLREQQADAHVRAALAQSGERQLQLRQQQAMF 126 + ++V G+ V +G VL +L + + + A + Q+ R + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 127 DDGASSNATLTAARAAADAASAQLQAARADLAMARRGTRLGELRAPFDGSVVARLQQPQA 186 + + + + + EL A A Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL---DKKRAERLTVLA 221 Query: 187 DVAAGQTVLQVEGQ 200 + + + +VE Sbjct: 222 RINRYENLSRVEKS 235 Score = 33.3 bits (76), Expect = 0.002 Identities = 14/136 (10%), Positives = 34/136 (25%), Gaps = 9/136 (6%) Query: 94 LRLREQQADAHVRAALAQSGERQLQLRQQQAMFDDGASSNATLTAARAAADAASAQLQAA 153 + + + +S + Q L + +L Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN 321 Query: 154 RADLAMARRGTRLGELRAPFDGSVVA-RLQQPQADVAAGQTVLQVEGQGHVQLV-ATLPA 211 + +RAP V ++ V +T++ + + V A + Sbjct: 322 EERQQAS-------VIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 212 AAGADLVPGQTVRARL 227 + GQ ++ Sbjct: 375 KDIGFINVGQNAIIKV 390
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 8e-24 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 1 MTGKKVLLVEDDADSASILEAYLRRDGFDVAMAGDGERAIQLHRQWAPDLVLLDVMLPKL 60 MTG +L+ +DDA ++L L R G+DV + + + DLV+ DV++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIEVLSAIR-RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119 + ++L I+ D PV++++A + A GA DY+ KP+ E++ + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RSVAVRAPGE 129 + E Sbjct: 121 EPKRRPSKLE 130
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 28.6 bits (64), Expect = 0.040 Identities = 7/32 (21%), Positives = 11/32 (34%) Query: 6 RFHAWRNQAPLWWWVGLRMSVLAVLTMMVIAF 37 + A L W V LA ++ +A Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAA 55
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 51.5 bits (123), Expect = 1e-10 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%) Query: 33 DLSKIMGTWYVIARMPNAVERGHVTSRDEYTLVEDGKVAVRYLYRDGFGEPE---KEVNA 89 +L+ +G WY +AR+ ++ ERG EY + DG ++V G+ E + KE Sbjct: 30 ELNNYLGKWYEVARLDHSFERGLSQVTAEYRVRNDGGISV---LNRGYSEEKGEWKEAEG 86 Query: 90 RASVDADSGNRDWRVWFYKVIPAKQRILEIAPDG-SWMLISYPGRDLAWIFARTPDMSRD 148 +A S + +V F+ + E+ + S+ +S P + W+ +RTP + R Sbjct: 87 KAYFVNGSTDGYLKVSFFGPFYGSYVVFELDRENYSYAFVSGPNTEYLWLLSRTPTVERG 146
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 27.9 bits (62), Expect = 0.048 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%) Query: 31 DPAAALMPSPW-SGSSGEFGYAAANGNSTTDSLNGRVRLRYTDGDWIHSLDATALRSSSE 89 + P W G + +GNS + + G Y + ++ A LR ++ Sbjct: 168 RARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTT 227 Query: 90 YTNTNEDGSTTRERQ-----TTAERYTGSVGSALQLGE 122 ++ + D S+ + + T ER + S L LG+ Sbjct: 228 WSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGD 265
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.6 bits (147), Expect = 9e-13 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 1 MTATQVRVLIADDEPLARERLRMLLG-EHPQVEVIGEAENGQQVVQQCEHLHPDLVLLDI 59 MT +L+ADD+ R L L V + N + + DLV+ D+ Sbjct: 1 MTGA--TILVADDDAAIRTVLNQALSRAGYDVRI---TSNAATLWRWIAAGDGDLVVTDV 55 Query: 60 AMPGVDGLETARLLRQSQPPPAVVFCTAYD--QHALSAFDAAALDYLMKPVRPERLASAL 117 MP + + +++++P V+ +A + A+ A + A DYL KP L + Sbjct: 56 VMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 118 EK 119 + Sbjct: 116 GR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 155 bits (393), Expect = 2e-46 Identities = 71/305 (23%), Positives = 130/305 (42%), Gaps = 22/305 (7%) Query: 59 LWLALAVSVLLCVLRPRLSRLPPRLGGLAALLIAAVVAMLG---AGIVHGLYAVLGQAPL 115 + L L + + R +L L L V+ M+ + L A + P+ Sbjct: 51 MGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPV 110 Query: 116 GALVGFWRFTLGSAGTVVLIT-ALALRYFYVS----------DRWEAQVQANARAEADAL 164 L VV++T +L YF D+W+ A A+ AL Sbjct: 111 AFT---LPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQ-EAQLMAL 166 Query: 165 QARIRPHFLFNSMNLIASLLRRDPVVAEQAVLDLSDLFRAALGAGEG-VSTLRAECELAE 223 +A+I PHF+FN++N I +L+ DP A + + LS+L R +L +L E + + Sbjct: 167 KAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVD 226 Query: 224 RYLAIESLRLGERLQVRWHRQEPLPWELPMPRLVLQPLVENAVLHGVSRMPEGGTLYLSL 283 YL + S++ +RLQ + ++ +P +++Q LVEN + HG++++P+GG + L Sbjct: 227 SYLQLASIQFEDRLQFENQINPAI-MDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKG 285 Query: 284 RQRGSQLQIRIVNPAPQPGTQLPLLAGAGHAQASISHRLAFQFGAGARMAASWAEGYYAC 343 + + + + N G ++ RL +G A++ S +G Sbjct: 286 TKDNGTVTLEVENTGSLALKNTKE--STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343 Query: 344 EITLP 348 + +P Sbjct: 344 MVLIP 348
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.4 bits (86), Expect = 4e-05 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 1/79 (1%) Query: 55 EAALQQAQRSQAQQRRQIEQLQQRQVNLAMSDKISRAANTEVQASLAERDEQIAALRADV 114 A Q +R R +QL+ L +KIS A+ ++ L E L A+ Sbjct: 308 NANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEH 367 Query: 115 AFYERLVG-STAQRKGLNA 132 E S A R+ L Sbjct: 368 QKLEEQNKISEASRQSLRR 386
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 1e-13 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 65 RVLIVEDDRSQALFAQSVLHGAGMHAQVEMTPASVPQAIQDYHPDLILMDLHMPELDGIR 124 +L+ +DD + L AG ++ A++ + I DL++ D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 125 LTTLIRQQPGQQLLPIVFLTGDPDPERQFEVLDSGADDFLTKPIRPRHLIAAVSNRIRRA 184 L I++ + LP++ ++ + + GA D+L KP LI + + Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 185 RRQ 187 +R+ Sbjct: 123 KRR 125
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 2e-10 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 498 RILLVEDNPVNLLIAQKLLAVLGFEADTATDGEAALTRMESICYDMVFMDCQMPVLDGYA 557 IL+ +D+ + + L+ G++ ++ + + D+V D MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 558 ATRRWRAMETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617 R + + +P++ M+A + G DYL KP +L + R L Sbjct: 65 LLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 618 PRQTLLPGP 626 P Sbjct: 120 AEPKRRPSK 128
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 29.1 bits (65), Expect = 0.005 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 11/110 (10%) Query: 37 LKELAEREYKESIDEMKHADKLSDRILFLEGLPNF---QALGKLRIGENP-----TEMFR 88 L E E Y + + D +++R+L + G P + I + +EM + Sbjct: 46 LHEKFEELYDHAAE---TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQ 102 Query: 89 CDLTLEREAVVVLREAVAYAETVKDYVSRQLLVDILESEEEHIDWLETQL 138 + ++ + + AE +D + L V ++E E+ + L + L Sbjct: 103 ALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 333 bits (855), Expect = e-108 Identities = 100/299 (33%), Positives = 158/299 (52%), Gaps = 13/299 (4%) Query: 309 SKARRDESNPIDAGGGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNRPKL 368 + ++ + A AS +EADP NAI++RD PERM Y LI LD Sbjct: 222 ATIQQVTVDNQRIPQAATRASAQARVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSAR 281 Query: 369 LQIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVG 428 +++ +I++I + +LGVDWR I+TG+ + G S A++GA Sbjct: 282 IEVALSIVDINADQLTELGVDWR-----VGIRTGNNHQVVIKTTGDQSNIASNGAL---- 332 Query: 429 GTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYAS 488 G+L G YL+ RV+ LE A++VS P + T +N +AV+DH + +V+V+G Sbjct: 333 GSLVDARGL--DYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEV 390 Query: 489 ADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQLGSNT--VDGIPVITSSEIKTQA 546 A+L ++ G LR+ P V+ ++ L++ IEDG N+ ++GIP I+ + + T A Sbjct: 391 AELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEGIPTISRTVVDTVA 450 Query: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVV 605 V GQSL+I G D L+ VP L IP +G LF+ + + R RLF++ P ++ Sbjct: 451 RVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVRLFIIEPRII 509 Score = 239 bits (611), Expect = 6e-73 Identities = 69/212 (32%), Positives = 110/212 (51%), Gaps = 6/212 (2%) Query: 15 LAAVLLLSLLPLFSPQADAAQVPWHSRTFKYVADNKDLKEVLRDLSASQSIATWISPEVT 74 VL +LL L S + A ++ W + YVA + L+++L D A+ +S ++ Sbjct: 9 FKRVLTGTLL-LLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKIN 67 Query: 75 GTLSGKFE-TSPQKFLDDLAATYGFVWYYDGAVLRIWGANESKSATLSLGTASTKSLRDA 133 +SG+FE +PQ FL +A+ Y VWYYDG VL I+ +E S + L + L+ A Sbjct: 68 DKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQA 127 Query: 134 LARMRLDDSRFPVRYDEAAHVAVVSGPPGYVDTVSAIARQVEQGARQR----DATEVQVF 189 L R + + RF R D + + VSGPP Y++ V A +EQ + R A +++F Sbjct: 128 LQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIF 187 Query: 190 QLHYAQAADHMTRIGGQDVQIPGMASLLRSIY 221 L YA A+D +V PG+A++L+ + Sbjct: 188 PLKYASASDRTIHYRDDEVAAPGVATILQRVL 219
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 174 bits (442), Expect = 1e-55 Identities = 51/240 (21%), Positives = 105/240 (43%), Gaps = 3/240 (1%) Query: 8 LLALSSQGVSLLTLLALCGVRVFVMFIVLPATAQDSLPGIARNGVIYVLSSFIAYGQPAD 67 L S Q +S L L +RV + P ++ S+P + G+ +++ IA PA+ Sbjct: 2 LQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPAN 61 Query: 68 ALAKIQTVGLVGVVFKEAFIGLLMGFAASTVFWIAESVGLLIDDLAGYNNVQMTNPLSGQ 127 + L + ++ IG+ +GF F + G +I G + +P S Sbjct: 62 DVPVFSFFAL-WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 Query: 128 QSTPVSTVLLQLAIVSFYALGGMLMLLGALFESFRWWPLTQLGPNMGAVAESFVIQQYDS 187 ++ ++ LA++ F G L L+ L ++F P+ + + A + + Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSL 178 Query: 188 MMAAVVKLSAPVMLVLVLVDLAIGLVARAADKLEPSNLSQPIRGVLALLLLALLTSVFIA 247 + + L+ P++ +L+ ++LA+GL+ R A +L + P+ + + L+A L + Sbjct: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.014 Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 93 AEQAQAAADQSLQSARDELASVQQALSKLQAQAQVYADKAASARRARQAQRDAAEEEDAI 152 +E + A+ S Q ++ + Q A +V + ++ + Q A + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 153 ET 154 ET Sbjct: 1094 ET 1095
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 31.3 bits (70), Expect = 0.002 Identities = 55/239 (23%), Positives = 88/239 (36%), Gaps = 47/239 (19%) Query: 4 WLRSTPDAIGMDCDVIPREALASVLALDAVTV--EVHARCEQALSQAQARAQTLIDEAQQ 61 W TPD D+ P +A + T+ E EQ L+Q Q +A +Q Sbjct: 7 WKTWTPD------DLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAH------EQ 54 Query: 62 QAEAILHDARQKAERSARLGYAAGLRRQLDEWNESGLRHAFAAETAAHRARERLAEIVAR 121 +A + + RQ+ + GY GL + L E GL A + + H ++L Sbjct: 55 GYQAGIAEGRQQGHKQ---GYQEGLAQGL----EQGLAEAKSQQAPIHARMQQLVSEFQT 107 Query: 122 TCEHI------------------ILGHDPA----ALYARAAQALEGALDEAKALRVSVHP 159 T + + ++G P AL + Q L+ + ++ VHP Sbjct: 108 TLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHP 167 Query: 160 DALDAARRAFDAAATEAGWTLQVELCGDADLAVGACVCEWDTGVFETDLRDQLRSLRRV 218 D L A + GW L+ GD L G C D G + + + + L R+ Sbjct: 168 DDLQRVDDMLGATLSLHGWRLR----GDPTLHPGGCKVSADEGDLDASVATRWQELCRL 222
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 79.6 bits (196), Expect = 3e-19 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 11/188 (5%) Query: 3 ALRYLVVLLLALLLSACSQQ---LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAV 59 A V +++A++L A + L+S L++ D ++ L + + G A+ Sbjct: 30 AGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPY-RFANGSG---AI 85 Query: 60 NAPHDQVSYSLEALRAHGLPHERHANLG-EMFKKDGLISTPTEERVRFIYGVSQQLSQTL 118 P D+V L GLP + +G E+ ++ + E+V + + +L++T+ Sbjct: 86 EVPADKVHELRLRLAQQGLP--KGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTI 143 Query: 119 SNIDGVISADVEIVLPNNDPLATSVKPSSAAVFIKFRVGSDLT-SLVPNIKTMVMHSVEG 177 + V SA V + +P K SA+V + G L + + +V +V G Sbjct: 144 ETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAG 203 Query: 178 LTYENVSV 185 L NV++ Sbjct: 204 LPPGNVTL 211
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 331 bits (850), Expect = e-114 Identities = 112/345 (32%), Positives = 191/345 (55%), Gaps = 2/345 (0%) Query: 1 MSEEKTEKPTEKKLRDARKDGEVPVSPDVTAAAVLFGALLVMKSAGDYFSDHMRALTRIG 60 MS EKTE+PT KK+RDARK G+V S +V + A++ ++ DY+ +H L I Sbjct: 1 MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIP 60 Query: 61 FDFPENTRDATAINRALAHIGIQGLLLMLPFLAACLVAGLVGGAFQTGLNASLKPVAPKF 120 + + A++ + ++ ++ L P L + + Q G S + + P Sbjct: 61 AE-QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDI 119 Query: 121 DSLNPANGVKKLFSLRSLINLLKLIIKAVLIGVVLWVGIRALMPMIIGLAYETPLDISQI 180 +NP G K++FS++SL+ LK I+K VL+ +++W+ I+ + ++ L I+ + Sbjct: 120 KKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPL 179 Query: 181 AWRTLSMLFALGVLLFILVGAADWSVQHWLFIRDKRMSKDEQKREHKESEGDPEIKGKRK 240 + L L + + F+++ AD++ +++ +I++ +MSKDE KRE+KE EG PEIK KR+ Sbjct: 180 LGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRR 239 Query: 241 EFAKELVFGDPRERVAKAKVMVVNPTHYAVALAYEPDDFGVPQVVAKGVDDGALELRAFA 300 +F +E+ + RE V ++ V+V NPTH A+ + Y+ + +P V K D +R A Sbjct: 240 QFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA 299 Query: 301 HNQGIPIVANPPLARALY-QVELGDAIPEQLFETVAVVLRWVDEL 344 +G+PI+ PLARALY + IP + E A VLRW++ Sbjct: 300 EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQ 344
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 65.0 bits (158), Expect = 3e-14 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 144 PAQLPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTAAAAVTSGEVLWG----I 199 PA LR R IG +LL + GDVLL T+ A V G + Sbjct: 138 PAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTSRAEVYCYAKKLGHFNRV 197 Query: 200 AGGAVLRAPVRLNMQQMILEASPTMQHDTFEPEVAPSTSNVAELELPVQLEVDQLALSLS 259 GG ++ L++Q + E + T E A + + +L + ++ + + ++L+ Sbjct: 198 EGGIIVET---LDIQHIEEENNTT--------ETAETLPGLNQLPVKLEFVLYRKNVTLA 246 Query: 260 TLSGLQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQI 306 L + Q+L L + ++ ++ G +G G L+ + + LGV+I Sbjct: 247 ELEAMGQQQLLSLPTNAEL-NVEIMANGVLLGNGELVQMNDTLGVEI 292
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.3 bits (84), Expect = 7e-04 Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 8/130 (6%) Query: 306 REQRRLALLDARLHALDVNDQGLAGEEGQRRAAVDNHQQRLSDLEAQRRSQGGERIDALE 365 Q + + L + + + RL D + Q + LE Sbjct: 197 TWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLE 256 Query: 366 REQ--LQVQGELARRSDKRAKAEQACRQLDQSLADNAHGFAEQ------SAQARAALEDG 417 +E ++ EL + + E + F + L Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316 Query: 418 QRLAAEQDEA 427 + E+ + Sbjct: 317 ELAKNEERQQ 326
>FLAGELLIN#Flagellin signature. Length = 507 Score = 29.6 bits (66), Expect = 0.031 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Query: 104 TQAIQAIRFADGLEQ-ARGAATESRLAL-VMQQLSQLAALTETNPDARLSALRDERDRID 161 TQA + + Q GA E L +++LS + A TN D+ L +++DE + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELS-VQATNGTNSDSDLKSIQDEIQQRL 119 Query: 162 AEIARVAAGKVASLDGKRAL 181 EI RV+ +G + L Sbjct: 120 EEIDRVSNQ--TQFNGVKVL 137