PredictBias

identification of genomic and pathogenicity islands in prokaryotic genome
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A) Input parameters
Genomesequence-10.gbThreshold dinucleotide bias2
Threshold codon bias4Threshold %GC bias3
E-value (RPSBlast)0.05Genome (non-pathogenic)
 
B) Compare a potential GI or PAI in related non-pathogenic sp. (phylogenetic tree)
Potential GI or PAI start    end  
Select Organism     
 
C) Potential GIs and PAIs in ABAK02000001 (download)
S.NoStartEndBiasVirulenceInsertion elementsPrediction
1SeKA_A0001SeKA_A0016Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A00014210.052318DNA topoisomerase IV, B subunit
SeKA_A0002118-0.291719esterase YqiA
SeKA_A0003117-0.279724cyclic 3',5'-adenosine monophosphate
SeKA_A0004218-1.889264conserved hypothetical protein
SeKA_A0005225-7.876551hypothetical protein
SeKA_A0006434-11.219421quaternary ammonium compound-resistance protein
SeKA_A0007335-11.481595outer membrane lipoprotein blc
SeKA_A0008437-12.209379beta-lactamase
SeKA_A0009644-15.087881hypothetical protein
SeKA_A0010443-14.024437TnpA
SeKA_A0011342-10.874493putative membrane protein
SeKA_A0012-323-2.348858bactoprenol glucosyl transferase
SeKA_A00130160.194150bactoprenol-linked glucose translocase
SeKA_A00141180.427452copE1
SeKA_A00152180.260126phosphate regulon sensor protein PhoR
SeKA_A00162210.212737cation efflux system protein CusA
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0002PHPHLIPASEA1270.039 Bacterial phospholipase A1 protein signature.
		>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature.

Length = 289

Score = 27.2 bits (60), Expect = 0.039
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 14/84 (16%)

Query: 77 WLSQCFMLPAVVV-----------NPAVRPFELLTDYLGQNENPYTGQQYVLESRHIYDL 125
WL FMLP V PAVR ++ + L +++NP+T Y ++ ++
Sbjct: 7 WLLPVFMLPMAVYAQEATVKEVHDAPAVRG-SIIANMLQEHDNPFTLYPY--DTNYLIYT 63

Query: 126 KVMQIDPLEAPDLIWLLQQTGDEV 149
+ ++ W DEV
Sbjct: 64 QTSDLNKEAIASYDWAENARKDEV 87


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0007BCTLIPOCALIN300e-108 Bacterial lipocalin signature.
		>BCTLIPOCALIN#Bacterial lipocalin signature.

Length = 171

Score = 300 bits (770), Expect = e-108
Identities = 77/151 (50%), Positives = 108/151 (71%), Gaps = 1/151 (0%)

Query: 25 PKGVTVVNNFDAKRYLGTWYEIARFDHRFERGLDKVTATYSLRDDGGINVINKGYNPDRE 84
P+ V V++F+ YLG WYE+AR DH FERGL +VTA Y +R+DGGI+V+N+GY+ ++
Sbjct: 20 PESVKPVSDFELNNYLGKWYEVARLDHSFERGLSQVTAEYRVRNDGGISVLNRGYSEEKG 79

Query: 85 MWQKTEGKAYFTGDPSRAALKVSFFGPFYGGYNVIALDRE-YRHALVCGPDRDYLWILSR 143
W++ EGKAYF + LKVSFFGPFYG Y V LDRE Y +A V GP+ +YLW+LSR
Sbjct: 80 EWKEAEGKAYFVNGSTDGYLKVSFFGPFYGSYVVFELDRENYSYAFVSGPNTEYLWLLSR 139

Query: 144 TPTISDEMKQQMLAIATREGFEVNKLIWVKQ 174
TPT+ + + + ++ GF+ N+LI+V+Q
Sbjct: 140 TPTVERGILDKFIEMSKERGFDTNRLIYVQQ 170


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0015PF06580331e-04 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 33.3 bits (76), Expect = 1e-04
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 25/104 (24%)

Query: 9 LLSNAMRY----TPPGKTITLRIKEADDQIHIIVENPGTPIAPEHLPRLFDCFYRIDPSR 64
L+ N +++ P G I L+ + + + + VEN G+
Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306

Query: 65 QRKGEGSGIGLAIVKSIVTAHQGK---VSVASDTRATRFILTLP 105
E +G GL V+ + G + ++ ++ +P
Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0016ACRIFLAVINRP647e-16 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 63.7 bits (155), Expect = 7e-16
Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 2 VLRGRSKAMTVSVIIAGLLPVLWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKL 61
+R R MT I G+LP+ GAGS + + ++GGM++A LL++F +P + +
Sbjct: 968 RMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027



Score = 27.9 bits (62), Expect = 0.003
Identities = 9/49 (18%), Positives = 23/49 (46%)

Query: 10 MTVSVIIAGLLPVLWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAA 58
V+ A +P+ + G+ + + + ++ M + L++L + PA
Sbjct: 444 GIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492


2SeKA_A0039SeKA_A0077Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0039-2123.8874874'-phosphopantetheinyl transferase EntD
SeKA_A0040-1132.941583ferrienterobactin receptor
SeKA_A00411173.627725conserved hypothetical protein
SeKA_A00421154.245868enterochelin esterase
SeKA_A00432164.419946conserved domain protein
SeKA_A00442164.612662enterobactin synthetase component F
SeKA_A00451143.989377ferric enterobactin transport protein FepE
SeKA_A00461145.750558ferric enterobactin transport ATP-binding
SeKA_A00470125.745945ferric enterobactin transport system permease
SeKA_A0048-1125.262427ferric enterobactin transport system permease
SeKA_A0049-2124.829496enterobactin exporter EntS
SeKA_A0050-3144.873088ABC superfamily
SeKA_A0051-2164.560096isochorismate synthase EntC
SeKA_A00520174.2107142,3-dihydroxybenzoate-AMP ligase
SeKA_A00530174.171363isochorismatase
SeKA_A00540153.6133382,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
SeKA_A0055-1132.797919putative esterase YbdB
SeKA_A0056-191.150124carbon starvation protein A
SeKA_A0057-116-2.591408conserved domain protein
SeKA_A0058-117-2.644127iron-containing alcohol dehydrogenase
SeKA_A0059-118-4.124291aminotransferase YbdL
SeKA_A0060121-6.032600IbrB protein
SeKA_A0061-116-3.672152IbrA protein
SeKA_A0062-212-3.083586transcriptional regulator, LysR family
SeKA_A0063-212-0.661088thiol:disulfide interchange protein DsbG
SeKA_A0064-212-0.319597alkyl hydroperoxide reductase subunit C
SeKA_A0066-2110.203576putative component of anaerobic dehydrogenase
SeKA_A0067-1101.629845molybdopterin-containing oxidoreductase
SeKA_A0068-1111.658284molybdopterin-containing oxidoreductase
SeKA_A0069-181.470980molybdopterin-containing oxidoreductase membrane
SeKA_A0070-1112.509744universal stress protein G
SeKA_A0072-1133.314263oxidoreductase, zinc-binding dehydrogenase
SeKA_A0073-1184.400187nucleoside diphosphate kinase regulator
SeKA_A0074-2214.529762ribonuclease I
SeKA_A0075-2234.841494sodium:sulfate symporter family protein
SeKA_A0076-1224.703752triphosphoribosyl-dephospho-CoA synthase CitG
SeKA_A00770223.327272holo-ACP synthase CitX
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0039ENTSNTHTASED365e-132 Enterobactin synthetase component D signature.
		>ENTSNTHTASED#Enterobactin synthetase component D signature.

Length = 234

Score = 365 bits (939), Expect = e-132
Identities = 227/234 (97%), Positives = 229/234 (97%)

Query: 1 MRTSHFPLPFAGHRLHIVDFDASSFHEHDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHA 60
M TSHFPLPFAGHRLHIVDFDASSF EHDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHA
Sbjct: 1 MLTSHFPLPFAGHRLHIVDFDASSFREHDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHA 60

Query: 61 LREVGVRTVPGIGDKRQPLWPDGLFGSISHCATTALAVISRQRIGIDIEKIMSQHTATEL 120
LREVGVRTVPG+GDKRQPLWPDGLFGSISHCATTALAVISRQRIGIDIEKIMSQHTATEL
Sbjct: 61 LREVGVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISRQRIGIDIEKIMSQHTATEL 120

Query: 121 APSIIDSDEHQILQASSLPFPLALTLAFSAKESVYKAFSDRVTLPGFDSAKVTSLTATHI 180
APSIIDSDE QILQAS LPFPLALTLAFSAKESVYKAFSDRVTLPGF+SAKVTSLTATHI
Sbjct: 121 APSIIDSDERQILQASLLPFPLALTLAFSAKESVYKAFSDRVTLPGFNSAKVTSLTATHI 180

Query: 181 SLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRFPHDRSAPASILSAIPR 234
SLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITR PHDRSAPASILSAIPR
Sbjct: 181 SLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRVPHDRSAPASILSAIPR 234


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0049TCRTETB290.041 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 29.1 bits (65), Expect = 0.041
Identities = 69/397 (17%), Positives = 130/397 (32%), Gaps = 66/397 (16%)

Query: 27 FISIVSLGLLGVAVPVQIQMMTHSTWQVGLSVTLTGGAMFIGLMVGGVLADRYERKKVIL 86
F S+++ +L V++P T IG V G L+D+ K+++L
Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

Query: 87 LARGTCGIGFIGLCVNSLLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQ 146
G + V ++A ++ G F +L ++ + +EN +
Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL----VMVVVARYIPKENRGK 139

Query: 147 AGAITMLTVRLGSVISPMLGGILLASGGVAWNYGLAAAGTFITLLPLLTLPRLPVPPQPR 206
A + V +G + P +GG++ + W+Y L IT++ + L +L
Sbjct: 140 AFGLIGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIP--MITIITVPFLMKLLKKEVRI 195

Query: 207 ------------------------------------------------ENPFIAL-LAAF 217
+PF+ L
Sbjct: 196 KGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKN 255

Query: 218 RFLLASPLIGGIALLGGLVTMASAVRVLYPALAMSWQMSAAQIGLLYAAI-PLGAAIGAL 276
+ L GGI T+A V ++ + Q+S A+IG + + I
Sbjct: 256 IPFMIGVLCGGIIF----GTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311

Query: 277 TSGQLAHSVRPGLIMLVSTVG---SFLAVGLFAIMPVWIAGVICLALFGWLSAISSLLQY 333
G L P ++ + SFL W +I + + G LS +++
Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371

Query: 334 TLLQTQTPENMLGRMNGLWTAQNVTGDAIGAALLGGL 370
+ + + M L + + G A++GGL
Sbjct: 372 IVSSSLKQQEAGAGM-SLLNFTSFLSEGTGIAIVGGL 407


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0050FERRIBNDNGPP602e-12 Ferrichrome-binding periplasmic protein signature.
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.

Length = 296

Score = 60.0 bits (145), Expect = 2e-12
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 21/210 (10%)

Query: 105 EPNAETVAAQMPDLILISATGGDSALALYDQLSAIAPTLVINYDDKS-----WQSLLTQL 159
EPN E + P ++ SA G S + L+ IAP N+ D + LT++
Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPS----PEMLARIAPGRGFNFSDGKQPLAMARKSLTEM 141

Query: 160 GEITGQEKQAAARIAEFEAQLTTVKQRIALPPQPVSALVYTPAAHSANLWTPESAQGKLL 219
++ + A +A++E + ++K R L ++ P S ++L
Sbjct: 142 ADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEIL 201

Query: 220 TQLGFTLATLPRGLQTSKSQGKRHDIIQLGGENLAAGLNGESLFLFAGDNKDVAALYANP 279
+ G A + + + + LAA + + L ++KD+ AL A P
Sbjct: 202 DEYGIPNAW--------QGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATP 253

Query: 280 LLAHLPAVQNKRVYALGTETFRLDYYSATL 309
L +P V+ R + F Y ATL
Sbjct: 254 LWQAMPFVRAGRFQRVPAVWF----YGATL 279


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0053ISCHRISMTASE425e-154 Isochorismatase signature.
		>ISCHRISMTASE#Isochorismatase signature.

Length = 312

Score = 425 bits (1095), Expect = e-154
Identities = 148/299 (49%), Positives = 192/299 (64%), Gaps = 18/299 (6%)

Query: 1 MAIPKLQSYALPTALDIPTNKVNWAFEPERAALLIHDMQDYFVSFWGRNCPMMDQVIANI 60
MAIP +Q Y +PTA D+P NKV+W +P RA LLIHDMQ+YFV + + ++ ANI
Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60

Query: 61 AALRQYCKEHHIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVEALTPDEADTV 120
L+ C + IPV YTAQP Q+ +DRALL D WGPGL P ++K++ L P++ D V
Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120

Query: 121 LVKWRYSAFHRSPLEQMLKDTGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD 180
L KWRYSAF R+ L +M++ GR+QLIITG+YAHIGC+ TA +AFM DIK F V DA+AD
Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180

Query: 181 FSREEHLMALNYVAGRSGRVVMTESLL------PTPVPASKA-----------ALRALIL 223
FS E+H MAL Y AGR VMT+SLL P V + A +R I
Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240

Query: 224 PLLDETDEPLD-DENLIDYGLDSVRMMGLAARWRKVHGDIDFVMLAKNPTIDAWWALLS 281
LL ET E + E+L+D GLDSVR+M L +WR+ ++ FV LA+ PTI+ W LL+
Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0054DHBDHDRGNASE338e-120 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 338 bits (868), Expect = e-120
Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 20/257 (7%)

Query: 9 KTVWVTGAGKGIGYATALAFVDAGARVIGFDRE---------------FTQENYPFATEV 53
K ++TGA +GIG A A GA + D E +P
Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP----- 63

Query: 54 MDVADAAQVAQVCQRVLQKTPRLDVLVNAAGILRMGATDALSVDDWQQTFAVNVGGAFNL 113
DV D+A + ++ R+ ++ +D+LVN AG+LR G +LS ++W+ TF+VN G FN
Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123

Query: 114 FSQTMAQFRRQQGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGCGVRCN 173
++ G+IVTV S+ A PR M+AY +SKAA +GLELA +RCN
Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183

Query: 174 VVSPGSTDTDMQRTLWVSEDAEQQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLA 233
+VSPGST+TDMQ +LW E+ +Q I+G E FK GIPL K+A+P +IA+ +LFL S A
Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243

Query: 234 SHITLQDIVVDGGSTLG 250
HIT+ ++ VDGG+TLG
Sbjct: 244 GHITMHNLCVDGGATLG 260


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0063BCTLIPOCALIN280.021 Bacterial lipocalin signature.
		>BCTLIPOCALIN#Bacterial lipocalin signature.

Length = 171

Score = 28.0 bits (62), Expect = 0.021
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 30 QGITILKSFEAPGGMKGYLGKYQDMGVTIYLTPDGKHAISG--YMYNEKGENLSNALIEK 87
+ + + FE YLGK+ ++ + G ++ + N+ G ++ N
Sbjct: 21 ESVKPVSDFEL----NNYLGKWYEVARLDHSFERGLSQVTAEYRVRNDGGISVLN----- 71

Query: 88 EIYAPAGREMWQKMEKASWILDGKKDAPVVLYVFADPF 125
Y+ + W++ E ++ ++G D + + F PF
Sbjct: 72 RGYSEE-KGEWKEAEGKAYFVNGSTDGYLKVSFFG-PF 107


3SeKA_A0166SeKA_A0223Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A01660143.696388ornithine decarboxylase, inducible
SeKA_A01670154.639451conserved hypothetical protein
SeKA_A01680154.819145KDP operon transcriptional regulatory protein
SeKA_A01690154.756783sensor protein KdpD
SeKA_A01700154.219165K+-transporting ATPase, C subunit
SeKA_A0171-1153.466159K+-transporting ATPase, B subunit
SeKA_A01720132.633275K+-transporting ATPase, A subunit
SeKA_A0173-1142.796108hypothetical protein
SeKA_A0174-1143.349002conserved hypothetical protein
SeKA_A0175-1143.888703deoxyribodipyrimidine photo-lyase
SeKA_A0176-2123.399829inner membrane transporter YbgH
SeKA_A0177-1163.916569conserved hypothetical protein
SeKA_A0178-2133.171001conserved hypothetical protein
SeKA_A0179-1151.999776allophanate hydrolase, subunit 2
SeKA_A0180-1161.004841protein YbgL
SeKA_A01810191.682577endonuclease VIII
SeKA_A01821201.369180protein AbrB
SeKA_A01832241.583435citrate (Si)-synthase
SeKA_A01842232.164235succinate dehydrogenase, cytochrome b556
SeKA_A01852262.699087succinate dehydrogenase, hydrophobic membrane
SeKA_A01861283.027429succinate dehydrogenase, flavoprotein subunit
SeKA_A01870272.160977succinate dehydrogenase iron-sulfur subunit
SeKA_A01881302.463393oxoglutarate dehydrogenase
SeKA_A01890311.511117dihydrolipoyllysine-residue succinyltransferase
SeKA_A01900310.605341succinate-CoA ligase, beta subunit
SeKA_A01911300.037661succinyl-CoA ligase [ADP-forming] subunit alpha
SeKA_A0192326-1.001343hypothetical protein
SeKA_A0193326-0.489398hypothetical protein
SeKA_A0194222-0.466380hypothetical protein
SeKA_A01952220.122038cytochrome d ubiquinol oxidase, subunit I
SeKA_A0196019-0.389492cytochrome d ubiquinol oxidase, subunit II
SeKA_A01977170.851209cyd operon protein YbgT
SeKA_A01982161.520225cyd operon protein YbgE
SeKA_A01993201.465268acyl-CoA thioester hydrolase YbgC
SeKA_A02002191.443879protein TolQ
SeKA_A02012181.637064protein TolR
SeKA_A02021161.410958protein TolA
SeKA_A0203-1130.775775tol-Pal system beta propeller repeat protein
SeKA_A0204-112-0.210826peptidoglycan-associated lipoprotein
SeKA_A0205-18-0.210180tol-pal system protein YbgF
SeKA_A0211-111-2.202572*****quinolinate synthetase complex, A subunit
SeKA_A0212020-5.882803protein PnuC
SeKA_A0213029-7.666393zinc transporter ZitB
SeKA_A0214242-10.988243putative homeobox protein
SeKA_A0215241-10.6498313-deoxy-7-phosphoheptulonate synthase,
SeKA_A0217228-6.230335fumarate hydratase
SeKA_A0218217-1.968603transcriptional regulator
SeKA_A02193171.358790transcriptional regulator
SeKA_A02202163.583162anion transporter
SeKA_A02211277.459710oxaloacetate decarboxylase gamma chain 3
SeKA_A02220246.276488oxaloacetate decarboxylase alpha subunit
SeKA_A02230184.372906oxaloacetate decarboxylase beta chain
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0168HTHFIS911e-23 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 91.4 bits (227), Expect = 1e-23
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 2 TNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGI 61
+L+ +D+ AIR L AL G V A DL++ D+ +PD +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 62 DFIRDLRQWSA-IPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHA 120
D + +++ +PV+V+SA++ I A + GA DYL KPF + EL + AL
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 121 ASP 123
P
Sbjct: 124 RRP 126


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0180V8PROTEASE300.007 V8 serine protease family signature.
		>V8PROTEASE#V8 serine protease family signature.

Length = 336

Score = 30.0 bits (67), Expect = 0.007
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 20 LTLVSSANIACGFHAGDAQTMLT---CVREALKNGVAIGAHPSFPDRDNFG----RTAMV 72
+ + IA G G T+LT V + A+ A PS ++DN+ +
Sbjct: 95 VEAPTGTFIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQI 153

Query: 73 LPPETVYAQTLYQIGALGAIVQAQGGV 99
+ + V
Sbjct: 154 TKYSGEGDLAIVKFSPNEQNKHIGEVV 180


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0187TCRTETOQM310.004 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 31.0 bits (70), Expect = 0.004
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 15 VDNAPRMQDYTLEGEEGRDM-MLLDALIQLKEKDPSLSFRR 54
++N + T+E + + MLLDAL+++ + DP L +
Sbjct: 339 IENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYV 379


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0202IGASERPTASE608e-12 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 60.1 bits (145), Expect = 8e-12
Identities = 28/198 (14%), Positives = 71/198 (35%), Gaps = 2/198 (1%)

Query: 64 YNRQQDQQASARRAEEERKKLQQQQAEELQQKQAAEQERLKQLEKERLAAQEQQKQAEEA 123
YN + +++ Q E R+ + A + E
Sbjct: 981 YNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETV 1040

Query: 124 AKLAQQQQQQAEEAAKAAADAKKKAEAEAAKAAADAKKKAEA-EAAKAAADAKKKAEAEA 182
A+ ++Q+ + E+ + A + + A +A ++ K + E A++ ++ K+ E
Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100

Query: 183 AKAA-ADAKKKAEAEAAKAAAEAKKKAEAEAAKAAAEAKKKADAEAAKAAAKKKADAEAA 241
+ A + ++KA+ E K K ++ + +E + A + +
Sbjct: 1101 KETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160

Query: 242 KAAADAKKKAAAEKAAAA 259
+ A + A++ ++
Sbjct: 1161 QTNTTADTEQPAKETSSN 1178



Score = 55.1 bits (132), Expect = 3e-10
Identities = 30/203 (14%), Positives = 68/203 (33%), Gaps = 4/203 (1%)

Query: 55 VDPGAVVQQYNRQQDQQASARRAEEERKKLQQQQAEELQQKQAAEQERLKQLEKERLAAQ 114
VD + N Q D S EE ++ + +E E + ++
Sbjct: 992 VDTTNITTPNNIQADVP-SVPSNNEEIARVDEAPVPPPAPATPSETTETVA-ENSKQESK 1049

Query: 115 EQQKQAEEAAKLAQQQQQQAEEAAKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAADA 174
+K ++A + Q ++ A+EA + E + + + E + A +
Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK-ETATVEK 1108

Query: 175 KKKAEAEAAKAAADAKKKAEAEAAKAAAEA-KKKAEAEAAKAAAEAKKKADAEAAKAAAK 233
++KA+ E K K ++ + +E + +AE K+ ++ A
Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADT 1168

Query: 234 KKADAEAAKAAADAKKKAAAEKA 256
++ E + ++
Sbjct: 1169 EQPAKETSSNVEQPVTESTTVNT 1191



Score = 52.0 bits (124), Expect = 3e-09
Identities = 25/219 (11%), Positives = 74/219 (33%), Gaps = 23/219 (10%)

Query: 66 RQQDQQASARRAEEERKKLQQQQAEE--LQQKQAAEQER------LKQLEKERLAAQEQQ 117
+ A + E + + +Q A E Q ++ A++ + + E + ++ ++
Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094

Query: 118 KQ-----------AEEAAKLAQQQQQQAEEAAKAAADAKKKAEAEAAKAAADAKKKAEAE 166
Q EE AK+ ++ Q E + + K+ ++E + A+ ++ +
Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQ--EVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152

Query: 167 AAKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAAEAKKKAEAEAAKAA--AEAKKKAD 224
++ A+ + A + E ++ + E + A + +
Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212

Query: 225 AEAAKAAAKKKADAEAAKAAADAKKKAAAEKAAAAEGVD 263
+E++ + + + ++ + D
Sbjct: 1213 SESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251



Score = 49.3 bits (117), Expect = 2e-08
Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 3/197 (1%)

Query: 65 NRQQDQQASARRAEEERKKLQQQQAEELQQKQAAEQERLKQLEKERLAAQEQQKQAEEAA 124
NR+ ++A + + Q E ++ Q E + +EKE A E +K E
Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124

Query: 125 KLAQQ--QQQQAEEAAKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAADAKKKAEAEA 182
+Q +Q+Q+E A A++ K ++ A+ + A + E
Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVNIK-EPQSQTNTTADTEQPAKETSSNVEQPV 1183

Query: 183 AKAAADAKKKAEAEAAKAAAEAKKKAEAEAAKAAAEAKKKADAEAAKAAAKKKADAEAAK 242
++ + E + A + + + + + + + A +
Sbjct: 1184 TESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243

Query: 243 AAADAKKKAAAEKAAAA 259
+ A + A
Sbjct: 1244 RSTVALCDLTSTNTNAV 1260


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0204OMPADOMAIN1168e-34 OMPA domain signature.
		>OMPADOMAIN#OMPA domain signature.

Length = 346

Score = 116 bits (291), Expect = 8e-34
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 56 EEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSN--PSYKVTVEGHADER 113
+Q + + V F+ +K ++ + A LD + L + V V G+ D
Sbjct: 205 APAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI 264

Query: 114 GTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVL 172
G+ YN L ERRA +V YL KG+ AD+IS G+ P V G+ K R A++
Sbjct: 265 GSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP-VTGN-TCDNVKQRAALI 321


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0205RTXTOXIND290.022 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 29.0 bits (65), Expect = 0.022
Identities = 2/39 (5%), Positives = 19/39 (48%)

Query: 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVMERQKQI 94
+ + + + + +++ + Q+++ + ++ E + +
Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLV 292


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0222RTXTOXIND330.002 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 33.3 bits (76), Expect = 0.002
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 508 ASSAPVQAAAPA-GTGTP------VSAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMET 560
+ V+ A A G T + + ++I EG++V +GDVLL L A+ E
Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134

Query: 561 EIRAAQA 567
+ Q+
Sbjct: 135 DTLKTQS 141



Score = 29.4 bits (66), Expect = 0.048
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 535 KVIATEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKSGDAVSVGDTLMTL 590
V G+ G EI+ + V+ I VK G++V GD L+ L
Sbjct: 82 IVATANGKLTHSGRSK----------EIKPIENSIVKEIIVKEGESVRKGDVLLKL 127


4SeKA_A0237SeKA_A0249Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A02370143.274000molybdate ABC transporter, permease protein
SeKA_A0238-1133.642420molybdate ABC transporter, ATP-binding protein
SeKA_A02390143.846666phosphatase YbhA
SeKA_A02400175.0366926-phosphogluconolactonase
SeKA_A0241-1165.805670acyl-CoA thioester hydrolase YbgC
SeKA_A0242-1166.084708imidazolonepropionase
SeKA_A02430166.099518formimidoylglutamase
SeKA_A0244-1165.228116histidine utilization repressor
SeKA_A0245-1155.736122urocanate hydratase
SeKA_A0246-1155.662946histidine ammonia-lyase
SeKA_A0247-1135.278568conserved hypothetical protein
SeKA_A0248-2154.314592adenosylmethionine-8-amino-7-oxononanoate
SeKA_A0249-2143.688588biotin synthase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0242PRTACTNFAMLY300.015 Pertactin virulence factor family signature.
		>PRTACTNFAMLY#Pertactin virulence factor family signature.

Length = 910

Score = 30.4 bits (68), Expect = 0.015
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 243 VLQTAKALGIPVKGHVEQLSLLGGAQLVSRYQGLSADHIEYLDEAGVAAMRDGGT 297
VL+ +P G +S+LG ++L L HI AGVAAM+
Sbjct: 202 VLRDTNVTAVPASGAPAAVSVLGASELT-----LDGGHITGGRAAGVAAMQGAVV 251


5SeKA_A0354SeKA_A0360Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A03541153.179997arginine ABC transporter, ATP-binding protein
SeKA_A03552174.273279YbjP
SeKA_A03562164.323487conserved hypothetical protein
SeKA_A03571154.248120N-acetylmuramoyl-L-alanine amidase AmiD
SeKA_A0358-2194.074696NAD dependent epimerase/dehydratase family
SeKA_A0359-2173.662205NAD dependent epimerase/dehydratase family
SeKA_A0360-2143.193732low-specificity L-threonine aldolase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0354PF05272300.007 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 30.4 bits (68), Expect = 0.007
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLTIAGNHFDFTKTPSDKAIREL 80
+VL G G GKS+L+ L L+ S T G D + + EL
Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDF-FSDTHFDIGTGKDSYEQIAGIVAYEL 647


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0358NUCEPIMERASE662e-14 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 66.3 bits (162), Expect = 2e-14
Identities = 69/370 (18%), Positives = 122/370 (32%), Gaps = 71/370 (19%)

Query: 1 MKVLVTGATSGLGRNAVEFLRNKGISVRA---------TGRNEAMGKLLEKMGAEFVHAD 51
MK LVTGA +G + + L G V +A +LL + G +F D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

Query: 52 LTELVSSQAKVMLAGIDTLWHCS-------SFTSPWGTQQAFDLANVRATRRLGEWAVAW 104
L + + ++ S +P A+ +N+ + E
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPH----AYADSNLTGFLNILEGCRHN 116

Query: 105 GVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQT--- 161
+++ ++ SS S+Y + D + +A +K A E L+A
Sbjct: 117 KIQHLLYASSSSVYGL-NRKMPFSTDDSVDHPVSLYAATKKANE----LMAHTYSHLYGL 171

Query: 162 RFTVLRPQSLFGPHDK--VFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLAS 219
T LR +++GP + + + + M S+ + + G D TY ++ A+
Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231

Query: 220 QPGCDHLPS--------------GRAYNITNGENRTLRSIVQKLIDELTIDCRIRSVPYP 265
R YNI N L +Q L D L I+ + +P
Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ 291

Query: 266 MLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDEGIERT 325
D+ T DT + +G+ P T+ +G++
Sbjct: 292 PGDV----------------LETS-----------ADTKALYEVIGFTPETTVKDGVKNF 324

Query: 326 AAWLRDHGNL 335
W RD +
Sbjct: 325 VNWYRDFYKV 334


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0359NUCEPIMERASE552e-10 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 55.2 bits (133), Expect = 2e-10
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 4 RILVLGASGYIGQHLVFALSQQGHQVRA---------AARRVERLEKQRLANVSCHKVDL 54
+ LV GA+G+IG H+ L + GHQV + + RLE HK+DL
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 55 HWPENLPALLRD--IDTVYYLVH------GMGEGGDFIAHERQAALNVRDALRQTPVKQL 106
E + L + V+ H + + LN+ + R ++ L
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121

Query: 107 IFLSS 111
++ SS
Sbjct: 122 LYASS 126


6SeKA_A0370SeKA_A0440Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0370-116-3.404348cold shock domain protein CspD
SeKA_A0371021-5.801392ATP-dependent Clp protease adaptor protein ClpS
SeKA_A0372226-6.662545ATP-dependent Clp protease ATP-binding subunit
SeKA_A0373750-11.275613hypothetical protein
SeKA_A0374851-11.593081transposase subfamily
SeKA_A0378852-11.206664transcriptional regulator, LysR family
SeKA_A0379751-11.211674putative ROK family protein
SeKA_A0380753-12.003171glucokinase
SeKA_A0381753-12.303008glucose-methanol-choline oxidoreductase
SeKA_A0382849-12.097454IolE protein
SeKA_A0383852-12.683475putative oxidoreductase YcjS
SeKA_A0384856-13.821687hypothetical protein
SeKA_A0385956-13.492807nucleoside:H symporter
SeKA_A0386954-12.903033conserved hypothetical protein
SeKA_A0389857-14.031431transposase (IS4 family)
SeKA_A0390857-14.170545conserved hypothetical protein
SeKA_A0391852-12.918517porin B
SeKA_A0393439-9.937919hypothetical protein
SeKA_A0394230-6.890534hypothetical protein
SeKA_A0395125-4.119884benzoate MFS transporter
SeKA_A03970150.870472integrase, catalytic region
SeKA_A0398-1112.073426ISPsy11, transposase OrfA
SeKA_A0400-2103.131470*SlsA
SeKA_A0401-3123.554505pirin
SeKA_A0402-2123.310897transcriptional regulator, LysR family
SeKA_A0403-2132.507706translation initiation factor IF-1
SeKA_A0404-2113.806144leucyl/phenylalanyl-tRNA--protein transferase
SeKA_A0405-2113.369147ATP-binding/permease protein cydC
SeKA_A0406-1103.238630ATP-binding/permease protein cydD
SeKA_A0407-1112.812076thioredoxin-disulfide reductase
SeKA_A0408-1112.300974leucine responsive regulatory protein
SeKA_A0409-2122.684570DNA translocase FtsK
SeKA_A0410-2141.461190outer membrane lipoprotein carrier protein LolA
SeKA_A0411-2141.361116putative DNA recombination-associated ATPase
SeKA_A0412112-0.327819seryl-tRNA synthetase
SeKA_A0413211-1.028331anaerobic dimethyl sulfoxide reductase chain a
SeKA_A0414417-4.568698dimethylsulfoxide reductase, B subunit
SeKA_A0415218-4.305111anaerobic dimethyl sulfoxide reductase, C
SeKA_A0416320-5.389032major facilitator family transporter
SeKA_A0417119-4.876811inner membrane transporter YcaM
SeKA_A0418123-4.680107pyruvate formate-lyase 1-activating enzyme
SeKA_A0420123-4.454532hypothetical protein
SeKA_A0421225-1.529216formate acetyltransferase
SeKA_A0422-110-1.069393putative formate transporter FocA
SeKA_A0423-111-0.646702conserved hypothetical protein
SeKA_A0424-113-0.229202hypothetical protein
SeKA_A0425121-0.648534conserved hypothetical protein
SeKA_A0426124-0.569738phosphoserine aminotransferase
SeKA_A0427126-0.9859533-phosphoshikimate 1-carboxyvinyltransferase
SeKA_A0428331-1.750769peptidase M48, Ste24p
SeKA_A0429120-0.225642cytidylate kinase
SeKA_A0430117-0.825208ribosomal protein S1
SeKA_A0431-1150.711082integration host factor, beta subunit
SeKA_A0432-1151.067403ISPsy11, transposase OrfA
SeKA_A04330141.066287integrase, catalytic region
SeKA_A0434-1131.748088DNA internalization-related competence protein
SeKA_A0435-1101.605921lipid A export permease/ATP-binding protein
SeKA_A0436-1143.082519tetraacyldisaccharide 4'-kinase
SeKA_A0437-1132.198356conserved hypothetical protein
SeKA_A0438-1131.819972tetraacyldisaccharide 4'-kinase
SeKA_A0439-2131.9459323-deoxy-D-manno-octulosonate
SeKA_A04402152.606675conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0372HTHFIS365e-04 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 36.0 bits (83), Expect = 5e-04
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 177 NQLARVGGIDPLIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQG 234
PL+GR ++ +VL R + ++ GESG GK +A L +
Sbjct: 128 KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRR 187

Query: 235 DVPEVMADCTIYSLD-IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEI 287
+ P V + D I S L G + +G F + EQ LF+DEI
Sbjct: 188 NGPFVAINMAAIPRDLIESELFGHE-KGAFTGAQTRSTGRFEQAEGGTLFLDEI 240


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0385TCRTETA431e-06 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 43.3 bits (102), Expect = 1e-06
Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 17/240 (7%)

Query: 169 GGWAIGGFIVGILGYSSTIGIFYVAGISGILLGGYS-FTLPKT--------NPKVKNIKF 219
G G + G++G S F+ A L F LP++ + N
Sbjct: 142 FGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLA 201

Query: 220 NLLDALGFRSLVLFKHKNFAILMICALLTSISLGVYNTYASPFLGSLGINGVASVMALGQ 279
+ A G + A+ I L+ + ++ + S+ A G
Sbjct: 202 SFRWARGMTVVAAL----MAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI 257

Query: 280 LSEVAFIVFVPFVIKKVGMKWALLIGMAMWGIRFILFILAAKGHHWMAFVGIGLHGICND 339
L +A + V ++G + AL++GM G +IL LA WMAF + L
Sbjct: 258 LHSLAQAMITGPVAARLGERRALMLGMIADGTGYIL--LAFATRGWMAFPIMVLLA-SGG 314

Query: 340 FFLIVSAMYIDRLAPHEMKVQAQSWLIIAISGFGAAFGSLISGYVYSITINAAIVQSWII 399
+ + R E + Q Q + A++ + G L+ +Y+ +I +WI
Sbjct: 315 IGMPALQAMLSRQVDEERQGQLQG-SLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIA 373


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0395TCRTETB508e-09 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 50.3 bits (120), Expect = 8e-09
Identities = 71/373 (19%), Positives = 145/373 (38%), Gaps = 23/373 (6%)

Query: 51 ADLNWDQLGYVGSLSEFGSLFGALVCSVISRRFGIKRVLITTVMIFCIGTFSQAFAPTIN 110
A NW ++ + S +++G L S + GIKR+L+ ++I C G+ +
Sbjct: 49 ASTNWVNTAFMLTFSIGTAVYGKL-----SDQLGIKRLLLFGIIINCFGSVIGFVGHSFF 103

Query: 111 IFAIL-RFIAGFGFGGVIPLVLSLLSEYSPKTSKSKSVATALCGNQFGAIIASFVAIYVT 169
I+ RFI G G LV+ +++ Y PK ++ K+ G + + +
Sbjct: 104 SLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163

Query: 170 TQFGQWRPVFWLGFIPVLLLPYIIKTMPESAL----FMLKNKDVEGLKRVLSRIDANYAS 225
W + + I ++ +P+++K + + F +K + + V + S
Sbjct: 164 HYIH-WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYS 222

Query: 226 SINIEESVNDF-----TVKKESNKVYYKDLFSKKYALVSILACVIAIMGLL--FINGVIV 278
+ SV F ++K ++ L + + C I G + F++ V
Sbjct: 223 ISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNI-PFMIGVLCGGIIFGTVAGFVSMVPY 281

Query: 279 WLPGVMTNAGYAIGSSIAFTIFLCTGTVVGAIFWGSVADKKGFI-VLMPSIYFIGSSCLI 337
+ V + IGS I F + + G + D++G + VL + F+ S L
Sbjct: 282 MMKDVHQLSTAEIGSVIIFPGTMSVI--IFGYIGGILVDRRGPLYVLNIGVTFLSVSFLT 339

Query: 338 L-MGVKSTIVVLYILITLVGFFLFAAHSLVNAFIAQHYAHDLRTVAIGLPNSLGRIGGLL 396
+++T + I+I V L ++++ ++ + L N +
Sbjct: 340 ASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399

Query: 397 GPALGGLLMANQF 409
G A+ G L++
Sbjct: 400 GIAIVGGLLSIPL 412


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0400ISCHRISMTASE381e-05 Isochorismatase signature.
		>ISCHRISMTASE#Isochorismatase signature.

Length = 312

Score = 38.1 bits (88), Expect = 1e-05
Identities = 41/171 (23%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 8 NGLRPVIDVNDSVMLLIDHQSGLFQTVGD--MPMPELRARAAALAKMATLAKMPVITTAS 65
N + V D N +V+L+ D Q+ P+ EL A L +PV+ TA
Sbjct: 20 NKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQ 79

Query: 66 VPQ-------------GPNGPLIPE----IHANAPHA-QYIARKGEINAWDNEDFVKAVK 107
GP P I AP + K +A+ + ++ ++
Sbjct: 80 PGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMR 139

Query: 108 ATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITL 158
GR LII G + A A E K F V DA +S ++ L
Sbjct: 140 KEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMAL 190


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0409IGASERPTASE561e-09 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 55.8 bits (134), Expect = 1e-09
Identities = 46/276 (16%), Positives = 85/276 (30%), Gaps = 44/276 (15%)

Query: 577 PQLPRPNRVR-----VPTRRELASYGIKLPSQRIAE-------EKAREAERNQYETGAQL 624
+ PN ++ VP+ E + + P A E E + + +T +
Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054

Query: 625 TDEEIDAMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYS 684
+ + Q R+ A+ + + +TQ E + +E + + +
Sbjct: 1055 EQDATETTAQ---NREVAKEAK----SNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107

Query: 685 GEQPAGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQPQYQQPQ 744
E+ A KV ++ P T V P+ +Q QPQ + +
Sbjct: 1108 KEEKA---------------KVETEKTQEVPKVTSQVSPKQ---EQSETVQPQAEPAREN 1149

Query: 745 QPV--APQPQYQQPQQPVASQPQYQQPQQPQQPVAP-QPQYQQPQQPVAPQPQYQQPQQP 801
P +PQ Q QP + +QPV P+ QP
Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209

Query: 802 VAPQPQYQQPQ----QPVAPQPQYQQPQQPTAPQDS 833
+P+ + V P +P ++ S
Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245



Score = 42.0 bits (98), Expect = 2e-05
Identities = 46/303 (15%), Positives = 86/303 (28%), Gaps = 46/303 (15%)

Query: 296 RATQPEYDEYDPLLNGHSVTEPVAAAAAATAVTQTWAASADP--IMQTPPMPGAETVVAQ 353
PE ++ + ++ ++T P A +V A PP P + +
Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038

Query: 354 PTVEWQP--------------VPGPQTGE------PVIAPAPEGYQPHPQYAQPQEAQSA 393
E Q E + + + ++ +E Q+
Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098

Query: 394 PWQQPVPVASAPQYAATPATAAEYDS----LAPQETQPQWQAPDAEQHWQPEPT------ 443
++ V + E ++P++ Q + P AE + +PT
Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158

Query: 444 ---HQPEPIAAEPSHMPPPVIEQPVTT---------EPEPGIEETRPARPPLYYFEEVEE 491
+P+ +EQPVT E T P E +
Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218

Query: 492 KRAREREQLAAWYQPIPEPVKENVPVKPTVSVAPSIPPVEAVAAAASLDAGIKSGALAAG 551
+ R R + + EP + + TV++ A + A + AL G
Sbjct: 1219 PKNRHRRSVRS-VPHNVEPATTSSNDRSTVALCDLT-STNTNAVLSDARAKAQFVALNVG 1276

Query: 552 AAA 554
A
Sbjct: 1277 KAV 1279



Score = 38.1 bits (88), Expect = 3e-04
Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 37/188 (19%)

Query: 723 PESTPVQQPVAPQPQPQYQ-----QPQQPVAPQPQYQQPQQPVASQPQYQQPQQPQQPVA 777
+ PV P P + Q+ + Q + A + + +
Sbjct: 1020 VDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN 1079

Query: 778 PQ-------------PQYQQPQQP---------------VAPQPQYQQPQQPVAPQPQYQ 809
Q Q + ++ P+ P Q +
Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139

Query: 810 QPQQPVAPQPQ----YQQPQQPTAPQDSLIHPLLMRNGDSRPLQRPTTPLPSLDLLTPPP 865
QPQ A + ++PQ T P + + +T + + + + P
Sbjct: 1140 QPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199

Query: 866 SEVEPVDT 873
P T
Sbjct: 1200 ENTTPATT 1207



Score = 37.4 bits (86), Expect = 4e-04
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 5/167 (2%)

Query: 724 ESTPVQQPVAPQPQPQYQ-QPQQ-PVAPQPQYQQPQQPVASQPQYQQPQQPQQPVAPQPQ 781
E+T + VA + + + Q VA + Q ++ ++ + V +
Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119

Query: 782 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV--APQPQYQQPQQPTAPQDSLIHPLL 839
+ P+ P+ +Q + V PQ + + P +PQ Q Q +
Sbjct: 1120 QEVPKVTSQVSPKQEQSET-VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178

Query: 840 MRNGDSRPLQRPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEAR 886
+ + T + P+ +P + R
Sbjct: 1179 VEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRR 1225


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0416TCRTETB348e-04 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 34.1 bits (78), Expect = 8e-04
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 6/158 (3%)

Query: 8 VMLLLCGLLLLT-LAIAVLNTLVPLWLAQANLPTWQVGMVSSSYFTGNLVGTLFTGYLIK 66
+++ LC L + L VLN +P N P V++++ +GT G L
Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74

Query: 67 RIGFNRSYYLASLIFAAGCVGLGVMVGFWSWMSW-RFIAGIGCAMIWVVVESALMCSGTS 125
++G R +I G V V F+S + RFI G G A +V +
Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134

Query: 126 HNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHVLPW 163
NRG+ + MG +G + G + H + W
Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPA----IGGMIAHYIHW 168


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0431DNABINDINGHU1174e-38 Prokaryotic integration host factor signature.
		>DNABINDINGHU#Prokaryotic integration host factor signature.

Length = 91

Score = 117 bits (294), Expect = 4e-38
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 2 TKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTG 61
K +LI ++A + + + K AV + ++S LA+GE++++ GFG+F + RA R G
Sbjct: 3 NKQDLIAKVA-EATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61

Query: 62 RNPKTGDKVELEGKYVPHFKPGKELRDR 89
RNP+TG++++++ VP FK GK L+D
Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDA 89


7SeKA_A0450SeKA_A0455Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0450016-3.178828outer membrane protein F
SeKA_A0451021-5.437066hypothetical protein
SeKA_A0452-118-4.103253asparagine tRNA synthetase
SeKA_A0453-216-3.658390regulator for leucine
SeKA_A0454-118-3.870252diaminopropionate ammonia-lyase
SeKA_A0455-215-3.069861conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0450ECOLIPORIN480e-173 E.coli/Salmonella-type porin signature.
		>ECOLIPORIN#E.coli/Salmonella-type porin signature.

Length = 383

Score = 480 bits (1236), Expect = e-173
Identities = 214/387 (55%), Positives = 264/387 (68%), Gaps = 29/387 (7%)

Query: 2 MKRKILAAVIPALLAAATANAAEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQI 61
MKRK+LA VIPALLAA A+AAEIYNKDGNKLDLYGK G H + + SK+ DQTY ++
Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLH-YFSDDSSKDGDQTYMRV 59

Query: 62 GFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGI 121
GFKGETQIN LTG+GQWEY +A+ EGE NS RLAFAGLK+ + GS DYGRNYG+
Sbjct: 60 GFKGETQINDQLTGYGQWEYNVQANTTEGEGANS-WTRLAFAGLKFGDYGSFDYGRNYGV 118

Query: 122 VYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKN 181
+YDVE +TDM P F G+++ Y DNYMT RA G+ TYRN+DFFGLVDGL+F +QYQGKN
Sbjct: 119 LYDVEGWTDMLPEFGGDSY--TYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKN 176

Query: 182 QDNHS---------------INSQNGDGVGYTMAYEFD-GFGVTAAYSNSKRTNDQQDRD 225
+ + I NGDG G + Y+ GF AAY+ S RTN+Q +
Sbjct: 177 ESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAG 236

Query: 226 G---NGDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTD-TVEMANKTQNLEVVA 281
G GD+A++W G KYDANN+YLA +Y+ETRNM+ T +ANKTQN EV A
Sbjct: 237 GTIAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKGYDGGVANKTQNFEVTA 296

Query: 282 QYQFDFGLRPAISYVQSKGKQLNGAD---GSADLAKYIQAGATYYFNKNMNVWVDYRFNL 338
QYQFDFGLRPA+S++ SKGK L + DL KY GATYYFNKN + +VDY+ NL
Sbjct: 297 QYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINL 356

Query: 339 LDEND--YSSSYVGTDDQAAVGITYQF 363
LD++D Y + + TDD A+G+ YQF
Sbjct: 357 LDDDDPFYKDAGISTDDIVALGMVYQF 383


8SeKA_A0484SeKA_A0504Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0484315-3.823255acylphosphatase
SeKA_A0485428-7.752864sulfurtransferase TusE
SeKA_A0486431-8.488232inner membrane protein YccA
SeKA_A0487236-9.226305hypothetical protein
SeKA_A0489336-9.418476*conserved hypothetical protein
SeKA_A0490337-9.915074PipA
SeKA_A0491031-8.157840pathogenicity island encoded protein: SPI3
SeKA_A0492124-5.569872chaperone protein SigE
SeKA_A0493025-4.884744inositol phosphate phosphatase SopB
SeKA_A0494125-4.042961conserved hypothetical protein
SeKA_A0495023-3.149986hypothetical protein
SeKA_A0496017-1.982135peptidase family C69
SeKA_A0497-115-0.949421heavy metal sensor kinase subfamily
SeKA_A0498-2130.184308transcriptional activator protein IrlR
SeKA_A0499-2142.055985hydroxyisourate hydrolase
SeKA_A0500-2182.3368994-hydroxyphenylacetate 3-monooxygenase,
SeKA_A0501-2192.2424854-hydroxyphenylacetate 3-monooxygenase,
SeKA_A0502-1233.498504homoprotocatechuate degradation operon
SeKA_A0503-1234.3732864-hydroxyphenylacetate degradation
SeKA_A05040243.6660915-carboxymethyl-2-hydroxymuconate semialdehyde
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0492PF078241642e-56 Type III secretion chaperone
		>PF07824#Type III secretion chaperone

Length = 120

Score = 164 bits (417), Expect = 2e-56
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 1 MESLLNRLYAALGLDAPE-DEPLLIIDDGIQVYFNESDHTLEMCCPFMPLPDDTLTLQHF 59
ME L + + ALG+ + + D+ +++DD + +Y + ++ + CPF LP++ L +
Sbjct: 1 MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLLCPFCALPENINDLIYA 60

Query: 60 LRLNYASAVTIGADADNTALVALYRLPQTSTEEEALTGFELFISNVKQLKERYA 113
L LNY+ + + D + +L+A L + E+ E +IS V+ LK+ +A
Sbjct: 61 LSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYYISRVRWLKDEFA 114


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0493TYPE3OMBPROT6550.0 Type III secretion system outer membrane B protein ...
		>TYPE3OMBPROT#Type III secretion system outer membrane B protein

family signature.
Length = 538

Score = 655 bits (1692), Expect = 0.0
Identities = 185/396 (46%), Positives = 254/396 (64%), Gaps = 5/396 (1%)

Query: 166 LNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYQGKGVCSWDTRNIHHANN 225
LNN+ W + ++H+G +Y PA+ MKIG K+IF Y GKG+C TR H N
Sbjct: 146 LNNKNWGPVNKNISHHGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESDHIAN 205

Query: 226 LWMSTVSVHEDGKDKTLFCGIRHGVLSPYH-EKDPLLRQVGAENKAKEVLTAALFSKPEL 284
+W+S V V ++GK+ +F GIRHGV+S Y +K+ R V A NKA+E+++AAL+S+PEL
Sbjct: 206 MWLSKV-VDDEGKE--IFSGIRHGVISAYGLKKNSSERAVAARNKAEELVSAALYSRPEL 262

Query: 285 LNRALAGEAVSLKLVSVGLLTASNIFGKEGTMVEDQMRAWQSL-TQPGKMIHLKIRNKDG 343
L++AL+G+ V LK+VS LLT +++ G E +M++DQ+ A + L ++ G+ L IRN DG
Sbjct: 263 LSQALSGKTVDLKIVSTSLLTPTSLTGGEESMLKDQVNALKGLNSKRGEPTKLLIRNSDG 322

Query: 344 DLQTVKIKPDVAAFNMGVNELTLKLGFGLKASDRYNAEALHQLLGNDLRPEARPGGWVGE 403
L+ V + V FN GVNEL LK+G G + D+ N E++ LLG++ GGW E
Sbjct: 323 LLKEVSVNLKVVTFNFGVNELALKMGLGWRNVDKLNDESICSLLGDNFLKNGVIGGWAAE 382

Query: 404 WLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAHEIDAVPAWNCKSG 463
+ + P V LA QIK+I D GEPYKL+QR+ +LA+ I AVP WNCKSG
Sbjct: 383 AIEKNPPCKNDVIYLANQIKEIINKKLQKNDNGEPYKLSQRMTLLAYTIGAVPCWNCKSG 442

Query: 464 KDRTGMMDSEIKREIISLHQTHMLNAPGSLPDSGGQKIFQKVLLNSGNLEIQKQNTGGAG 523
KDRTGM D+EIKREII H+T + S S +++F +L+NSGN+EIQ+ NTG G
Sbjct: 443 KDRTGMQDAEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPG 502

Query: 524 NKVLKNLSPEVLNLSYQKRIGDENIWQSVKGISSLI 559
NKV+K L L LSY +RIGD IW VKG SS +
Sbjct: 503 NKVMKKLPLSSLELSYSERIGDSKIWNMVKGYSSFV 538


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0497PF06580340.001 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 34.1 bits (78), Expect = 0.001
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 343 ILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGD 402
+L+Q ++ N + + I + I ++ D+ + V N GS K
Sbjct: 258 MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE-------- 309

Query: 403 NARHTAGFGLGLSLVNA-IALLHGGSASYRYADEHNIFSVRL 443
G GL V + +L+G A + +++ + +
Sbjct: 310 ------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0498HTHFIS832e-20 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 82.6 bits (204), Expect = 2e-20
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
IL+ +D+ + Q L+ AGY V + L++ D+++P + +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117
+L ++ A PV+ ++A+++ +K E GA DYL KPF EL+ + L +
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121


9SeKA_A0513SeKA_A0549Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0513-1143.535813chaperone modulatory protein CbpM
SeKA_A0514-1133.114186curved DNA-binding protein
SeKA_A0515-1153.248179membrane protein, suppressor for
SeKA_A0516-1143.087497membrane protein, suppressor for
SeKA_A0517-3131.709374suppressor for copper-sensitivity C
SeKA_A0518-2132.007056suppressor for copper-sensitivity D
SeKA_A0519-2120.844234glucose-1-phosphatase
SeKA_A05202161.285147putative cytoplasmic protein
SeKA_A05210114.589148NAD(P)H:quinone oxidoreductase, type IV
SeKA_A05220123.790259conserved hypothetical protein
SeKA_A05230113.558895conserved domain protein
SeKA_A05241112.489618HTH-type transcriptional regulator RutR
SeKA_A05251111.339545putative secreted protein
SeKA_A0526110-0.851966bifunctional protein PutA
SeKA_A0528225-9.694837sodium/proline symporter
SeKA_A0530850-19.193836hypothetical protein
SeKA_A05311048-18.718255hypothetical protein
SeKA_A0532747-15.709247hypothetical protein
SeKA_A0533130-6.692340conserved hypothetical protein
SeKA_A0534017-1.029472conserved hypothetical protein
SeKA_A0535018-1.000172hypothetical protein
SeKA_A0536217-0.835152hypothetical protein
SeKA_A0539115-1.302653*hypothetical protein
SeKA_A0538014-1.751863putative 2-hydroxyacid dehydrogenase YcdW
SeKA_A0540-117-3.511585putative hydrolase
SeKA_A0541-122-5.773849chaperone, TorD family
SeKA_A0542026-7.282419inner membrane protein YcdZ
SeKA_A0543027-7.565238curli production assembly/transport component
SeKA_A0544033-8.654924curli production assembly/transport component
SeKA_A0545034-8.337901curli production assembly/transport component
SeKA_A0546134-7.842239transcriptional regulator CsgD
SeKA_A0547-129-4.081722minor curlin protein CsgB
SeKA_A0548-222-1.731625major curlin subunit
SeKA_A0549-321-3.182277curli production protein CsgC
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0524HTHTETR625e-14 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 62.0 bits (150), Expect = 5e-14
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 8/158 (5%)

Query: 20 RQLILTAALAVFSQYGIHGARLEQVAERAGVSKTNLLYYYPSKEALYVAVMRQILDIWLA 79
RQ IL AL +FSQ G+ L ++A+ AGV++ + +++ K L+ +
Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72

Query: 80 PLKAFRAEF--SPLEAIKEYIRLKLEVSRDYPQASRLF-CMEMLAGAPLLMEELTGDLKA 136
++A+F PL ++E + LE + + L + M + +
Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132

Query: 137 LIDEKSALIAGWVHSG-----KLAPVSPHHLIFMIWAA 169
L E I + A + ++
Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170


10SeKA_A0583SeKA_A0593Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0583-2143.055652flagellar hook protein FlgE
SeKA_A0584-1152.529010flagellar basal-body rod protein FlgF
SeKA_A0585-1151.606328flagellar basal-body rod protein FlgG
SeKA_A05861152.640786flagellar L-ring protein FlgH
SeKA_A05872152.626346flagellar P-ring protein FlgI
SeKA_A05882121.468854flagellar rod assembly protein/muramidase FlgJ
SeKA_A05893131.148912flagellar hook-associated protein FlgK
SeKA_A05903131.847192flagellar hook-associated protein 3
SeKA_A05914131.798537ribonuclease E
SeKA_A0593214-1.370319pseudouridine synthase, RluA family
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0583FLGHOOKAP1416e-06 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

Length = 546

Score = 41.5 bits (97), Expect = 6e-06
Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 378 LTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 425
L+N S V+L +E N+ Q+ Y +NAQ ++T + I + L+N+R
Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546



Score = 37.6 bits (87), Expect = 7e-05
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFAD----MFAGSKVGLGVKVAGI 57
+ A+SGLNAA L+ NNI++ G+ T A + AG VG GV V+G+
Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0585FLGHOOKAP1444e-07 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

Length = 546

Score = 43.8 bits (103), Expect = 4e-07
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 3 SSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTL 62
S + A +GL+A Q ++ +NN+++ + G+ RQ + + +TL
Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTL 47

Query: 63 PSGLQIGTGVRPVATERLHSQ 83
+G +G GV +R +
Sbjct: 48 GAGGWVGNGVYVSGVQREYDA 68



Score = 41.1 bits (96), Expect = 3e-06
Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 220 ETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 260
S VN+ EE N+ + Q+ Y N++ + T + + L +
Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0586FLGLRINGFLGH331e-118 Flagellar L-ring protein signature.
		>FLGLRINGFLGH#Flagellar L-ring protein signature.

Length = 232

Score = 331 bits (849), Expect = e-118
Identities = 205/221 (92%), Positives = 216/221 (97%)

Query: 1 MALMVATLTGCAWIPAKPLVQGATTAQPIPGPVPVANGSIFQSAQPINYGYQPLFEDRRP 60
+L+V +LTGCAWIP+ PLVQGAT+AQP+PGP PVANGSIFQSAQPINYGYQPLFEDRRP
Sbjct: 12 SSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRP 71

Query: 61 RNIGDTLTIVLQENVSASKSSSANASRDGKTSFGFDTVPRYLQGLFGNSRADMEASGGNS 120
RNIGDTLTIVLQENVSASKSSSANASRDGKT+FGFDTVPRYLQGLFGN+RAD+EASGGN+
Sbjct: 72 RNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNT 131

Query: 121 FNGKGGANASNTFSGTLTVTVDQVLANGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 180
FNGKGGANASNTFSGTLTVTVDQVL NGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG
Sbjct: 132 FNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 191

Query: 181 SNSVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 221
SN+VPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM
Sbjct: 192 SNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0587FLGPRINGFLGI429e-153 Flagellar P-ring protein signature.
		>FLGPRINGFLGI#Flagellar P-ring protein signature.

Length = 373

Score = 429 bits (1104), Expect = e-153
Identities = 153/362 (42%), Positives = 215/362 (59%), Gaps = 9/362 (2%)

Query: 5 LAGIVLALVATLAHAERIRDLTSVQGVRENSLIGYGLVVGLDGTGDQTTQTPFTTQTLNN 64
A L+ A RI+D+ S+Q R+N LIGYGLVVGL GTGD +PFT Q++
Sbjct: 14 SALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRA 73

Query: 65 MLSQLGITVPTGTNMQLKNVAAVMVTASYPPFARQGQTIDVVVSSMGNAKSLRGGTLLMT 124
ML LGIT G + KN+AAVMVTA+ PPFA G +DV VSS+G+A SLRGG L+MT
Sbjct: 74 MLQNLGITTQGGQS-NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMT 132

Query: 125 PLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAIIERELPTQFGAGNT 184
L G D Q+YA+AQG ++V G A +++ R+ NGAIIERELP++F
Sbjct: 133 SLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVN 192

Query: 185 INLQLNDEDFTMAQQITDAINRAR----GYGSATALDARTVQVRVPSGNSSQVRFLADIQ 240
+ LQL + DF+ A ++ D +N G A D++ + V+ P + R +A+I+
Sbjct: 193 LVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV-ADLTRLMAEIE 251

Query: 241 NMEVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQLNVNQPNTPFGGG 300
N+ V T AKVVIN RTG++V+ +V + AV+ G L+V V V QP PF G
Sbjct: 252 NLTVE-TDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQP-APFSRG 309

Query: 301 QTVVTPQTQIDLRQSGGSLQSVRSSANLNSVVRALNALGATPMDLMSILQSMQSAGCLRA 360
QT V PQT I Q G + ++ +L ++V LN++G +++ILQ ++SAG L+A
Sbjct: 310 QTAVQPQTDIMAMQEGSKV-AIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQA 368

Query: 361 KL 362
+L
Sbjct: 369 EL 370


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0588FLGFLGJ4980.0 Flagellar protein FlgJ signature.
		>FLGFLGJ#Flagellar protein FlgJ signature.

Length = 313

Score = 498 bits (1283), Expect = 0.0
Identities = 262/316 (82%), Positives = 289/316 (91%), Gaps = 3/316 (0%)

Query: 1 MIGDGKLLASAAWDAQSLNELKAKAGQDPAANIRPVARQVEGMFVQMMLKSMREALPKDG 60
MI D KLLASAAWDAQSLNELKAKAG+DPAANIRPVARQVEGMFVQMMLKSMR+ALPKDG
Sbjct: 1 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60

Query: 61 LFSSDQTRLYTSMYDQQIAQQMTAGKGLGLADMMVKQMTGGQTMPADDAPQVPLKFSLET 120
LFSS+ TRLYTSMYDQQIAQQMTAGKGLGLA+MMVKQMT Q +P + P P+KF LET
Sbjct: 61 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120

Query: 121 VNSYQNQALTQLVRKAIPKTPDSSDAPLSGDSKDFLARLSLPARLASEQSGVPHHLILAQ 180
V YQNQAL+QLV+KA+P+ D S L GDSK FLA+LSLPA+LAS+QSGVPHHLILAQ
Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDS---LPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQ 177

Query: 181 AALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTEITTTEYENGEAKKVKAKFRVYN 240
AALESGWGQRQI RENGEPSYN+FGVKA+ +WKGPVTEITTTEYENGEAKKVKAKFRVY+
Sbjct: 178 AALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYS 237

Query: 241 SYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQNAGYATDPNYARKLTSMIQQLKAM 300
SYLEALSDYV LLTRNPRYAAVTTAA+AEQGA ALQ+AGYATDP+YARKLT+MIQQ+K++
Sbjct: 238 SYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSI 297

Query: 301 SEKVSKTYSANLDNLF 316
S+KVSKTYS N+DNLF
Sbjct: 298 SDKVSKTYSMNIDNLF 313


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0589FLGHOOKAP16630.0 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

Length = 546

Score = 663 bits (1713), Expect = 0.0
Identities = 438/553 (79%), Positives = 487/553 (88%), Gaps = 8/553 (1%)

Query: 2 SSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYVS 61
SSLIN+AMSGLNAAQAALNT SNNI++YNVAGYTRQTTI+AQANSTLGAGGW+GNGVYVS
Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60

Query: 62 GVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLV 121
GVQREYDAFITNQLR AQ QSSGLT RYEQMSKIDN+L+ +SSL+ +Q FFTSLQTLV
Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120

Query: 122 SNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLND 181
SNAEDPAARQALIGK+EGLVNQFKTTDQYLRDQDKQVNIAIG+SV QINNYAKQIA+LND
Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180

Query: 182 QISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQGSTA 241
QISR+TGVGAGASPN+LLDQRDQLVSELN+IVGVEVSVQDGGTYN+TMANGY+LVQGSTA
Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240

Query: 242 RQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQL 301
RQLAAVPSSADP+RTTVAYVD AGNIEIPEKLLNTGSLGG+LTFRSQDLDQTRNTLGQL
Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300

Query: 302 ALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQAT 361
ALAFA+AFN QH G+DA+G+ G+DFF+IG P V N+ N V++ A V D++ V AT
Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGD-VAIGATVTDASAVLAT 359

Query: 362 DYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGVQKNDSFLLKPVSNAI 421
DYKI FD WQVTR A NTTFT T DA+GK+ DGL++T NDSF LKPVS+AI
Sbjct: 360 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 419

Query: 422 VDMNVKVTNEAEIAMASESKLDPDVDTGDSDNRNGQALLDLQ-NSNVVGGNKTFNDAYAT 480
V+M+V +T+EA+IAMASE D GDSDNRNGQALLDLQ NS VGG K+FNDAYA+
Sbjct: 420 VNMDVLITDEAKIAMASEE------DAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYAS 473

Query: 481 LVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQ 540
LVSD+GNKT+TLKTSS TQ NVV QL QQQS+SGVNLDEEYGNLQR+QQYYLANAQVLQ
Sbjct: 474 LVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQ 533

Query: 541 TANALFDALLNIR 553
TANA+FDAL+NIR
Sbjct: 534 TANAIFDALINIR 546


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0590FLAGELLIN414e-06 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

Length = 507

Score = 41.2 bits (96), Expect = 4e-06
Identities = 30/138 (21%), Positives = 59/138 (42%)

Query: 1 MRISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNS 60
I+T + + + SQ+ E++S+G R+ + DD + A + +
Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61

Query: 61 QYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQ 120
Q + E L+++ +Q +E V A NGT SD D S+ ++Q ++
Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121

Query: 121 LMNLANSTDGNGRYIFAG 138
+ ++N T NG + +
Sbjct: 122 IDRVSNQTQFNGVKVLSQ 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0591IGASERPTASE551e-09 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 55.1 bits (132), Expect = 1e-09
Identities = 49/259 (18%), Positives = 92/259 (35%), Gaps = 26/259 (10%)

Query: 513 PSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSVATAKKDNVAAAQPAQPGLFSRF 572
P E+ + DVP P+ + A+ D PA P S
Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSN-----NEEIARVDEAPVPPPA-PATPSET 1036

Query: 573 LNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRDNRAGRDGG 632
S +E+KTVE A E + ++ K ++N + +T+ N + G
Sbjct: 1037 TE-TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA-----NTQTNEVAQSGS 1090

Query: 633 ESRDDNRRNRRQAQQQNAETR---DTRQQETAEKVKTGDEQQQTPRRERSRRRNDDKRQA 689
E+++ ++ E + +T + + KV + Q +P++E+S A
Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS----QVSPKQEQSETVQPQAEPA 1146

Query: 690 QQEVKALNREEQPVQETEQEERVQQVQPRRKQRQLNQKVRFTNSAVVETVDTPVVVDEPR 749
++ +N +E Q + QP ++ N + T S V T ++ V E
Sbjct: 1147 RENDPTVNIKEPQSQTNTTAD---TEQPAKETSS-NVEQPVTESTTVNTGNSVVENPENT 1202

Query: 750 PVENVEQPVPAPRTELAKV 768
+ P +E +
Sbjct: 1203 TPATTQ---PTVNSESSNK 1218



Score = 41.2 bits (96), Expect = 3e-05
Identities = 49/356 (13%), Positives = 88/356 (24%), Gaps = 53/356 (14%)

Query: 646 QQQNAETRDTRQQETAEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQE 705
++ +T DT T ++ + E +R E
Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDE------APVPPPAPATPSETTE 1038

Query: 706 TEQEERVQQVQPRRKQRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTEL 765
T E Q+ + K Q + N V + V + E + T+
Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKE-AKSNVKANTQTNEVAQSGSETKETQT 1097

Query: 766 AKVDLPVVADIAPEQDDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP 825
+ A + E+ VE +++ P+ ++ + + +
Sbjct: 1098 TETKET--ATVEKEEKAKVETE-------KTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148

Query: 826 LTVACASPEMASGKVWIRYPIVRPQETQVVEEQREADLALPQPVVAEQQVIAATVALEPQ 885
P V +E Q + AD P
Sbjct: 1149 -----------------NDPTVNIKEPQS-QTNTTADTEQPAKET-------------SS 1177

Query: 886 ASVQAVENVAVEPQTVAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPVAQEVIA- 944
Q V + + PE TT P V + ++ S V V
Sbjct: 1178 NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237

Query: 945 -----DAEPVAETADASITVAENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQ 995
D VA S ++D AV +H ++ + Q
Sbjct: 1238 TTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293



Score = 35.8 bits (82), Expect = 0.001
Identities = 53/291 (18%), Positives = 95/291 (32%), Gaps = 36/291 (12%)

Query: 718 RRKQRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRT---ELAKVDLPVVA 774
+ K R +N + N V E + V N++ VP+ + E+A+VD V
Sbjct: 968 KYKLRNVNGRYDLYNPEV-EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVP 1026

Query: 775 DIAP----EQDDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQ-SPMPLTVA 829
AP E ++V + + Q R ++ + + + VA
Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA 1086

Query: 830 CASPEMASGKVWIRYPIVRPQETQVVEEQREADLALPQPVVAEQQVIAATVALEPQASVQ 889
+ E + +ET VE++ +A V E+ V Q S +
Sbjct: 1087 QSGSETKETQT------TETKETATVEKEEKAK------VETEKTQEVPKVT--SQVSPK 1132

Query: 890 AVENVAVEPQT-----------VAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPV 938
++ V+PQ + EPQ+ +T P + EQP + ES T
Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQP--VTESTTVN 1190

Query: 939 AQEVIADAEPVAETADASITVAENVADVVVVEPEEETKAEAAVVEHTAEET 989
+ + A TV ++ ++ VE +
Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241


11SeKA_A0645SeKA_A0703Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0645-220-6.209455hydrolase, NUDIX family
SeKA_A0646-124-7.521495putative secreted protein
SeKA_A0647026-9.154356ribosomal large subunit pseudouridine synthase
SeKA_A0648128-10.404781isocitrate dehydrogenase, NADP-dependent
SeKA_A0649442-13.810656hypothetical protein
SeKA_A0650340-13.026055putative bacteriophage protein
SeKA_A0651131-11.526687putative inner membrane protein
SeKA_A0653232-10.937040EnvF
SeKA_A0654333-9.808519conserved domain protein
SeKA_A0655434-10.605757EnvE
SeKA_A0657436-11.194204hypothetical protein
SeKA_A0658634-10.457242virulence membrane protein PagC
SeKA_A0661327-6.997050**hypothetical protein
SeKA_A0662225-6.189312putative periplasmic protein
SeKA_A0663129-6.185039conserved hypothetical protein
SeKA_A0664031-5.870506conserved hypothetical protein
SeKA_A0665131-6.050335heat shock protein
SeKA_A0666020-3.052157BNR/Asp-box repeat domain protein
SeKA_A0667219-2.397031nickel-dependent hydrogenase, B-type cytochrome
SeKA_A0668218-0.871744conserved hypothetical protein
SeKA_A06693170.456404hypothetical protein
SeKA_A06702171.143511hypothetical protein
SeKA_A06711160.380856nickel ABC transporter, periplasmic
SeKA_A06721180.415348ABC-type dipeptide/oligopeptide/nickel
SeKA_A0673119-0.647776ABC nickel/di-oligopepetide transporter,
SeKA_A0674018-1.122010ABC nickel/di-oligopepetide transporter, ATP
SeKA_A0675-122-4.233024ATP-binding protein of ABC transport system
SeKA_A0676025-5.954195MscS Mechanosensitive ion channel
SeKA_A0678229-6.923668conserved hypothetical protein
SeKA_A0679028-7.195550*metal-binding protein YodA
SeKA_A0680027-7.045706streptomycin 3''-adenylyltransferase
SeKA_A0681-129-8.612378transcriptional regulator, LuxR family protein
SeKA_A0682-124-6.503348putative transcriptional regulator
SeKA_A0683025-5.337824putative cytoplasmic protein
SeKA_A0684023-4.833194monofunctional chorismate mutase
SeKA_A0685225-4.258212translocator protein, LysE family
SeKA_A0686325-2.572768conserved hypothetical protein
SeKA_A0687323-1.559835conserved domain protein
SeKA_A0688125-1.365861conserved hypothetical protein
SeKA_A0691226-1.257619protein YeaQ
SeKA_A06922222.674844hypothetical protein
SeKA_A06930212.879820putative hemolysin
SeKA_A06940212.333516conserved hypothetical protein
SeKA_A0695-1221.514980conserved hypothetical protein
SeKA_A0696-1192.036298hypothetical protein
SeKA_A0697-117-1.609004inner membrane transport protein YeaN
SeKA_A0699-116-3.866990conserved hypothetical protein
SeKA_A0700-117-4.529518conserved hypothetical protein
SeKA_A0701013-3.807227putative inner membrane protein
SeKA_A0702012-3.606827YbaK/prolyl-tRNA synthetase-associated domain
SeKA_A0703012-4.134052ggdef domain protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0658ENTEROVIROMP1944e-66 Enterobacterial virulence outer membrane protein si...
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein

signature.
Length = 171

Score = 194 bits (494), Expect = 4e-66
Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 18/187 (9%)

Query: 1 MKNIILSTLVITTSVLVVNVAQADTNAFSVGYAQSKVQDFKN-IRGVNVKYRYE-DDSPV 58
MK I + + + A T+ + GYAQS Q N + G N+KYRYE D+SP+
Sbjct: 1 MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPL 60

Query: 59 SFISSLSYLYGDSQASGSIEPEGIHYHDKFEVKYGSFMVGPAYRLSDNFSLYALAGVGTV 118
I S +Y AS D + +Y GPAYR++D S+Y + GVG
Sbjct: 61 GVIGSFTYTEKSRTASSG---------DYNKNQYYGITAGPAYRINDWASIYGVVGVGYG 111

Query: 119 KATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISSTKINGFN 178
K E+ T D+ GF++GAG+Q NP+EN+ +D YE S I S + +
Sbjct: 112 KFQTTEYPTYKHDT-------SDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWI 164

Query: 179 VGVGYRF 185
GVGYRF
Sbjct: 165 AGVGYRF 171


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0661PF07201293e-04 Hypersensitivity response secretion protein HrpJ
		>PF07201#Hypersensitivity response secretion protein HrpJ

Length = 293

Score = 29.0 bits (65), Expect = 3e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 7 LRILPGSLNKAKHLNTQQRQFRQFELFFKNRINH 40
L I+ L K K + Q + F FF +
Sbjct: 255 LGIVISDLQKLKEFGSVSDQVKGFWQFFSEGKTN 288


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0691HTHTETR280.002 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 28.4 bits (63), Expect = 0.002
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 4 LSWIIFGLIAGILAKWIMPG-----KDGGGFFMTIIL 35
+ I+ G I+G++ W+ K ++ I+L
Sbjct: 163 AAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILL 199


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0697TCRTETA290.040 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 28.6 bits (64), Expect = 0.040
Identities = 69/347 (19%), Positives = 117/347 (33%), Gaps = 29/347 (8%)

Query: 35 PLLETIRSDYGLST---AQTGLLTTLPLLAFALVSPLAAGIARRFGMERSLFAAMLLICA 91
P+L + D S A G+L L L +P+ ++ RFG L ++
Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV 85

Query: 92 GIALRSL-PSAALLFAGTAIIGCGIALGNVLLPGLIKRDFSQHVARLTGAYSLTMGAAAA 150
A+ + P +L+ G + G A G V + AR G S G
Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145

Query: 151 LGSA---LVVPLALHGFGWRGALLMLMLFPLLAFLIWLPQWRTTRSANLSSSRALHERGI 207
G L+ + H + A L + F FL+ R + L
Sbjct: 146 AGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRW 205

Query: 208 WR--SPLAWQVTLFLGLN-----SLIYYVIIG-----WLPTILISHGYSEAQAGSLHGLL 255
R + +A + +F + +VI G W T + G S A G LH L
Sbjct: 206 ARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI---GISLAAFGILHSLA 262

Query: 256 QLATAAPGLAIPLILHRFNDQRWIAALVSLLCAVGAAGLWFVPGQAVIWTLLFGFGSGAT 315
Q + + R ++R + + + G L F + + ++ SG
Sbjct: 263 QA------MITGPVAARLGERRALMLGM-IADGTGYILLAFATRGWMAFPIMVLLASGGI 315

Query: 316 MILGLTFIGLRASSAHQAAALSGMAQSVGYLLAACGPPVMGKLHDAS 362
+ L + R + L G ++ L + GP + ++ AS
Sbjct: 316 GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0699PRTACTNFAMLY280.012 Pertactin virulence factor family signature.
		>PRTACTNFAMLY#Pertactin virulence factor family signature.

Length = 910

Score = 28.5 bits (63), Expect = 0.012
Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 49 QGLTVGIIILTIGVMAPIASGTLPPSTLIHSFVNWKSLVAIAVGVFVSWLGGRGITLMG 107
Q + L IG + + LPPS ++ N ++ A VS LG +TL G
Sbjct: 174 QRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDG 232


12SeKA_A0718SeKA_A0747Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0718014-3.638246inner membrane metabolite transport protein
SeKA_A0719019-4.980088sorbitol dehydrogenase
SeKA_A0720-118-4.227083fructose-bisphosphate aldolase, class II family
SeKA_A0721018-3.706718kinase, pfkB family
SeKA_A0722012-1.704792oxidoreductase, aldo/keto reductase family
SeKA_A0723012-1.436923transcriptional regulator, DeoR family
SeKA_A0724-1110.604018inner membrane metabolite transport protein
SeKA_A0725-2122.621982pyrazinamidase/nicotinamidase
SeKA_A0726-1122.844321L-asparaginase 1
SeKA_A07270143.350485signal peptide peptidase SppA, 67K type
SeKA_A07280123.598224nitroreductase family protein
SeKA_A07290123.068509selenide, water dikinase
SeKA_A07301122.193207DNA topoisomerase III
SeKA_A07310152.187234NADP-specific glutamate dehydrogenase
SeKA_A07320131.229719conserved hypothetical protein
SeKA_A07330142.663911CTP pyrophosphohydrolase
SeKA_A07340142.578550exodeoxyribonuclease III
SeKA_A0735-1173.341817conserved hypothetical protein
SeKA_A0736-1173.331128succinylornithine transaminase
SeKA_A07370172.836474arginine N-succinyltransferase
SeKA_A07380182.870403succinylglutamic semialdehyde dehydrogenase
SeKA_A07391171.231776succinylarginine dihydrolase
SeKA_A07403150.367792succinylglutamate desuccinylase
SeKA_A0741317-1.638321hypothetical protein
SeKA_A0742317-1.331212spheroplast protein Y
SeKA_A0743215-1.541201excinuclease cho
SeKA_A0745117-2.739970NAD+ synthetase
SeKA_A0744017-5.236215hypothetical protein
SeKA_A0746-114-5.193873osmotically-inducible lipoprotein E
SeKA_A0747-115-4.438389PTS system, N,N'-diacetylchitobiose-specific IIB
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0718TCRTETB320.005 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 31.8 bits (72), Expect = 0.005
Identities = 31/142 (21%), Positives = 48/142 (33%), Gaps = 23/142 (16%)

Query: 71 MFLGALVGGIIGDKTGRRNAFILYEAIHIASMIVGAFSPNMMF-LIACRFVMGVGLGALL 129
+G V G + D+ G + + I+ ++G + LI RF+ G G A
Sbjct: 62 FSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFP 121

Query: 130 VTLFAGFTEYMPGRNR----GTWSSRVSFIGNWSYPLCSLIAMGLTPLISA----EWNWR 181
+ Y+P NR G S V+ + G+ P I +W
Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVA------------MGEGVGPAIGGMIAHYIHWS 169

Query: 182 VQLLIPAVLSLIATALAWRYFP 203
LLIP + I T
Sbjct: 170 YLLLIPMI--TIITVPFLMKLL 189


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0724TCRTETB393e-05 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 39.1 bits (91), Expect = 3e-05
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 65 ALMLGYFIGSLTGGFIGDYLGRRKAFRINLLLVGISATAAAFVPNMY-WLIFFRCLMGTG 123
A ML + IG+ G + D LG ++ +++ + + + LI R + G G
Sbjct: 57 AFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG 116

Query: 124 MGALIMVGYASFTEFIPPIVRGKWSARLSFVGNWSPMLSAGIGVVVIAFLSWRMMFLL 181
A + +IP RGK + + + IG ++ ++ W + L+
Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174


13SeKA_A0788SeKA_A0794Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0788018-3.836113protein FixB
SeKA_A0789-119-4.354915FixA protein
SeKA_A0790-120-5.164845hypothetical protein
SeKA_A0791020-5.150110transcriptional regulator, AraC family protein
SeKA_A0792021-4.715524acyl-CoA dehydrogenase
SeKA_A0793022-5.307988coenzyme A transferase domain protein
SeKA_A0794121-4.0183803-dehydroquinate dehydratase, type I
14SeKA_A0813SeKA_A0858Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0813024-3.650204conserved domain protein
SeKA_A0814-218-4.446093Lpp2
SeKA_A0815-213-1.028588major outer membrane lipoprotein
SeKA_A0816-212-0.612404pyruvate kinase I
SeKA_A0817-115-0.196890amino acid transporter
SeKA_A08190140.941899conserved hypothetical protein
SeKA_A0820-1112.039992putative regulatory protein, DeoR family
SeKA_A0821-1113.542129tetrathionate reductase complex, subunit A
SeKA_A08220142.790549tetrathionate reductase complex subunit C
SeKA_A08230142.565975tetrathionate reductase subunit B
SeKA_A08241170.366116sensor-kinase
SeKA_A0825027-5.632799response regulator
SeKA_A0826231-7.486270conserved hypothetical protein
SeKA_A0827233-8.084089putative inner membrane protein
SeKA_A0829338-9.601743transcriptional regulator, MerR family protein
SeKA_A0830440-10.623187EsrB
SeKA_A0831338-9.823826secretion system regulator:Sensor component
SeKA_A0832337-8.936057type III secretion outer membrane pore,
SeKA_A0833336-7.947817type III secretion apparatus protein, YscD/HrpQ
SeKA_A0834233-7.260785type III secretion system protein, YseE family
SeKA_A0835332-6.864877secretion system effector SseB
SeKA_A0836337-6.134630type III secretion low calcium response
SeKA_A0837439-6.414076secretion system effector SseC
SeKA_A0838640-6.410407translocation machinery component
SeKA_A0839642-6.915133secreted effector protein
SeKA_A0840843-7.069663type III secretion low calcium response
SeKA_A0841643-8.211640secretion system effector SseF
SeKA_A0842643-9.233410secretion system effector SseG
SeKA_A0843441-10.707681type III secretion apparatus needle protein
SeKA_A0844242-9.090876type III secretion system protein, SsaH family
SeKA_A0845343-9.225314type III secretion system apparatus protein
SeKA_A0846236-8.147404type III secretion apparatus lipoprotein,
SeKA_A0847135-6.298419secretion system apparatus
SeKA_A0848034-6.512565type III secretion apparatus protein, HrpE/YscL
SeKA_A0849133-6.131559secretion system apparatus protein SsaL
SeKA_A0850234-6.194694secretion system apparatus SsaM
SeKA_A0851234-6.357272secretion system apparatus SsaV
SeKA_A0852239-6.392494type III secretion apparatus H+-transporting
SeKA_A0853544-10.214283secretion system apparatus SsaO
SeKA_A0854545-11.082668secretion system apparatus protein SsaP
SeKA_A0855333-7.907350type III secretion apparatus protein, YscQ/HrcQ
SeKA_A0856127-7.252780type III secretion apparatus protein, YscR/HrcR
SeKA_A0857-122-6.283086secretion system apparatus protein SsaS
SeKA_A0858019-4.555471type III secretion apparatus protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0813VACJLIPOPROT280.003 VacJ lipoprotein signature.
		>VACJLIPOPROT#VacJ lipoprotein signature.

Length = 251

Score = 27.9 bits (62), Expect = 0.003
Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 6 KLILGAVVLSSTLLAGCSSNAKIDQLSSD 34
KL L A+ L +TLL GC+S+ Q SD
Sbjct: 2 KLRLSALALGTTLLVGCASSGTDQQGRSD 30


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0814VACJLIPOPROT280.002 VacJ lipoprotein signature.
		>VACJLIPOPROT#VacJ lipoprotein signature.

Length = 251

Score = 28.3 bits (63), Expect = 0.002
Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 6 KLILGAVVLGSTLLAGCSSNAKIDQLSSD 34
KL L A+ LG+TLL GC+S+ Q SD
Sbjct: 2 KLRLSALALGTTLLVGCASSGTDQQGRSD 30


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0815VACJLIPOPROT270.006 VacJ lipoprotein signature.
		>VACJLIPOPROT#VacJ lipoprotein signature.

Length = 251

Score = 27.2 bits (60), Expect = 0.006
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5 KLVLGAVILGSTLLAGCSSNAKIDQLSSD-VQTLNAKVDQLSNDV 48
KL L A+ LG+TLL GC+S+ Q SD ++ N + + +V
Sbjct: 2 KLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNV 46


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0825HTHFIS852e-21 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 84.9 bits (210), Expect = 2e-21
Identities = 31/127 (24%), Positives = 56/127 (44%)

Query: 8 ATIHLLDDDTAVTNACAFLLESLGYDVKCWTQGADFLAQASLYQAGVVLLDMRMPVLDGQ 67
ATI + DDD A+ L GYDV+ + A + +V+ D+ MP +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 68 GVHDALRQCGSTLAVVFLTGHGDVPMAVEQMKRGAVDFLQKPVSVKPLQAALERALTVSS 127
+ +++ L V+ ++ A++ ++GA D+L KP + L + RAL
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 128 AAVARRE 134
++ E
Sbjct: 124 RRPSKLE 130


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0830HTHFIS667e-15 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 66.0 bits (161), Expect = 7e-15
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 1 MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLP 60
M IL+ DD I + AL + V N ++ A + D+++ D+ +P
Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMP 58

Query: 61 GINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQT 119
N D++P++ + P + +LV +A IK GA Y+ K L+ +
Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0831HTHFIS687e-14 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 67.9 bits (166), Expect = 7e-14
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 13/156 (8%)

Query: 691 ILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIEC 750
IL+ DD R ++ + L G V I +++ DLV+ D+ MP+ + +
Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

Query: 751 VQLWHEEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEY 810
+ PD + +SA + + G + Y+ KP L L
Sbjct: 66 LP----RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG-------- 113

Query: 811 QLLRNIELQEQDPSRCSALLAT-DDMVINSKIFQSL 845
+ R + ++ PS+ +V S Q +
Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0832TYPE3OMGPROT5820.0 Type III secretion system outer membrane G protein ...
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

family signature.
Length = 607

Score = 582 bits (1502), Expect = 0.0
Identities = 158/500 (31%), Positives = 261/500 (52%), Gaps = 15/500 (3%)

Query: 11 LLFILNTAKSDELSWKGNDFTLYARQMPLAEVLHLLSENYDTAITISPLITATFSGKIPP 70
LL + + + + EL W + A+ L ++L NYD + +S I SG+
Sbjct: 17 LLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEH 76

Query: 71 GPPVDILNNLAAQYDLLTWFDGSMLYVYPASLLKHQVITFNILSTGRFIHYLRSQNILSS 130
P D L ++A+ Y+L+ ++DG++LY++ S + ++I L+ I
Sbjct: 77 DNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWE- 135

Query: 131 PGCEVKEITGTRAVEVSGVPSCLTRISQLASVLDNALIKR--KDSAVSVSIYTLKYATAM 188
P + R V VSG P L + Q A+ L+ R K A+++ I+ LKYA+A
Sbjct: 136 PRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASAS 195

Query: 189 DTQYQYRDQSVVVPGVVSVL-REMSKTSVPASSTNN-----GSPATQALPMFAADPRQNA 242
D YRD V PGV ++L R +S ++ + +N + A ADP NA
Sbjct: 196 DRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADPSLNA 255

Query: 243 VIVRDYAANMAGYRKLITELDQRQQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG---- 298
+IVRD M Y++LI LD+ IE+++ I+D+NA + +LG+DW + G
Sbjct: 256 IIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQV 315

Query: 299 --KKIAFNTGLNDGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVL 356
K + + GA G + R+N LE A V+S+P+++T N QAV+
Sbjct: 316 VIKTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVI 375

Query: 357 DKNITFYTKLQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSET 416
D + T+Y K+ G++VA+L+ IT G++LR+TPR+L +I LNL+I+DG Q S
Sbjct: 376 DHSETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 417 DPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQV 476
+ +P + + + + A + GQSL++GG + + + +K+PLLGDIP +G LFR +
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELT 495

Query: 477 HSVIRLFLIKASVVNNGISH 496
+RLF+I+ +++ GI+H
Sbjct: 496 RRTVRLFIIEPRIIDEGIAH 515


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0836SYCDCHAPRONE894e-25 Gram-negative bacterial type III secretion SycD cha...
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

chaperone signature.
Length = 168

Score = 89.2 bits (221), Expect = 4e-25
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 20 TLQQAHDTMRFFRRGGSLRMLL---DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLT 76
T + F + GG++ ML D L LY A + ++ A ++FQ L
Sbjct: 8 TQEYQLAMESFLKGGGTIAMLNEISSDT----LEQLYSLAFNQYQSGKYEDAHKVFQALC 63

Query: 77 IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 136
+ D + ++ LG C QA + AI++Y A + I P+ P+ AAEC L + A
Sbjct: 64 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123

Query: 137 IKALKAVVRICGEVSEHQILRLRAEKMLQQLSDR 170
L + + +E + L R ML+ + +
Sbjct: 124 ESGLFLAQELIADKTEFKELSTRVSSMLEAIKLK 157


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0840SYCDCHAPRONE809e-22 Gram-negative bacterial type III secretion SycD cha...
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

chaperone signature.
Length = 168

Score = 79.6 bits (196), Expect = 9e-22
Identities = 26/127 (20%), Positives = 49/127 (38%)

Query: 14 LKQLLSVDPESVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT 73
L ++ S E +Y+ + +Q G Y A F L + + R + L + +Y
Sbjct: 28 LNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87

Query: 74 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 133
AI+ Y + ++D P + CL GE A A ++ + E+
Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRV 147

Query: 134 QIMVDTL 140
M++ +
Sbjct: 148 SSMLEAI 154


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0846FLGMRINGFLIF533e-10 Flagellar M-ring protein signature.
		>FLGMRINGFLIF#Flagellar M-ring protein signature.

Length = 559

Score = 53.0 bits (127), Expect = 3e-10
Identities = 29/183 (15%), Positives = 69/183 (37%), Gaps = 15/183 (8%)

Query: 23 LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 82
L+ +L + + ++A L Q +I + V + L G P +
Sbjct: 53 LFSNLSDQDGGAIVAQLTQMNIPYRFA--NGSGAIEVPADKVHELRLRLAQQGLP-KGGA 109

Query: 83 TADKMFPANQLVVSPQEEQQKINFLK--EQRIEGMLSQMEGVINAKVTIALPTYDEGS-- 138
++ + +S EQ +N+ + E + + + V +A+V +A+P + S
Sbjct: 110 VGFELLDQEKFGISQFSEQ--VNYQRALEGELARTIETLGPVKSARVHLAMP---KPSLF 164

Query: 139 --NASPSSVAVFIKYSPQVNMEAFRVK-IKDLIEMSIPGLQYSKISILMQPAEFRMVPDV 195
S +V + P ++ ++ + L+ ++ GL ++++ Q +
Sbjct: 165 VREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT 224

Query: 196 PAR 198
R
Sbjct: 225 SGR 227


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0855TYPE3OMOPROT533e-10 Type III secretion system outer membrane O protein ...
		>TYPE3OMOPROT#Type III secretion system outer membrane O protein

family signature.
Length = 303

Score = 53.5 bits (128), Expect = 3e-10
Identities = 17/69 (24%), Positives = 32/69 (46%)

Query: 247 LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGN 306
L Q+P ++ F + R ++ + +L + +L + V I N ++G GEL+ +
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 307 EFMVRITRW 315
V I W
Sbjct: 287 TLGVEIHEW 295


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0856TYPE3IMPPROT2319e-80 Type III secretion system inner membrane P protein ...
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein

family signature.
Length = 224

Score = 231 bits (592), Expect = 9e-80
Identities = 79/215 (36%), Positives = 130/215 (60%), Gaps = 8/215 (3%)

Query: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67
+ LI +L ++LP II GT F+K ++VF ++RNALG+QQ+P N+ L G+AL+LS+F+M
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64

Query: 68 GPTLLAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWP 126
P + + V + S+ + L YR +L K S+ + +F N +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124

Query: 127 ED-------IKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG 179
+ K +I+ S+ L+PA+ +S++ AF+IG +YLPF+ +DL++S++LLA+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 180 MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214
MMM+SP+TIS P KL++F+ GW L L+ +
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0857TYPE3IMQPROT312e-05 Type III secretion system inner membrane Q protein ...
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

family signature.
Length = 86

Score = 31.3 bits (71), Expect = 2e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 1 MIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG 37
IKLL + + L + W +LL+Y RQ++ G
Sbjct: 50 GIKLLGVCLCLFLLSGWYGEVLLSYGRQVIFLALAKG 86


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0858TYPE3IMRPROT1643e-52 Type III secretion system inner membrane R protein ...
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

family signature.
Length = 261

Score = 164 bits (418), Expect = 3e-52
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 5/229 (2%)

Query: 8 WLIALAVDFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMMHIGKD 67
WL +R L+L P+L S+ ++ G+ M +TF I P + + +
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPANDVPVF---S 67

Query: 68 YSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGL 127
+ L L +++IG +GF F AV AG ++ G + T + +
Sbjct: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127

Query: 128 LFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCVSF 187
+ ++F G +++++L +++ LP G L FL +A ++ +
Sbjct: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL-IFLNGLML 186

Query: 188 SVPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPY 236
++P I ++ +LALGLLNR A QL++F PL + + + P
Sbjct: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235


15SeKA_A0978SeKA_A1003Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0978117-3.297778Ni/Fe-hydrogenase, B-type cytochrome subunit
SeKA_A0979018-3.892915[Ni/Fe] hydrogenase, large subunit
SeKA_A0980022-5.526225uptake hydrogenase small subunit
SeKA_A0981126-7.934106hypothetical protein
SeKA_A0982126-6.937922choloylglycine hydrolase
SeKA_A0983126-5.569306putative regulatory protein
SeKA_A0984127-5.463867zinc-type alcohol dehydrogenase
SeKA_A0985130-6.816520membrane transport protein
SeKA_A0986132-6.584495PqaA protein
SeKA_A0987130-5.369716major facilitator superfamily MFS_1
SeKA_A0988230-6.137923monooxygenase, FAD-binding
SeKA_A0989438-10.046283transcriptional regulator, MarR family
SeKA_A0990838-10.899564putative
SeKA_A09911137-9.906210endoribonuclease L-PSP family protein
SeKA_A09921139-11.428830putative stability protein StbE
SeKA_A09931141-11.593081putative stability protein StbD
SeKA_A09941238-11.734254hypothetical protein
SeKA_A09951043-11.624533conserved hypothetical protein
SeKA_A0996941-10.858932hypothetical protein
SeKA_A0997734-6.553098hypothetical protein
SeKA_A0998434-5.334644hypothetical protein
SeKA_A0999439-8.659600hypothetical protein
SeKA_A1000235-6.927413protein TolA
SeKA_A1001026-5.042450conserved hypothetical protein
SeKA_A1002025-4.666032LysR substrate binding domain protein
SeKA_A1003-122-4.2362412-nitropropane dioxygenase NPD
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0985TCRTETA552e-10 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 55.2 bits (133), Expect = 2e-10
Identities = 67/396 (16%), Positives = 138/396 (34%), Gaps = 30/396 (7%)

Query: 10 IVFLLFIVYMLNYMDRSALSITAPLIEKELGFN---AAEMGMIFSAFFIGYALFNFIGGW 66
++ +L V L+ + + P + ++L + A G++ + + + + G
Sbjct: 7 LIVILSTVA-LDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65

Query: 67 ASDKVGPKTVFLIAALLWSVFCGLTGLVTGLWTMLIVRVLFGMAEGPVSAAGNKIINNWI 126
SD+ G + V L++ +V + LW + I R++ G+ + AG I +
Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGA-YIADIT 124

Query: 127 SRKESATAIGIFSAGSPLGGAVSGPIVGLLALSLGWRPAFGIIFLFGLVWVLLWYFIVSD 186
E A G SA G V+GP++G L F + L F++ +
Sbjct: 125 DGDERARHFGFMSA-CFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183

Query: 187 KPTMSKRLAPEERIDFENHEDVILSDDGRATPSLGYYMKQPMVWATTLAFFSYNYILFFF 246
+R E + + + FF +
Sbjct: 184 SHKGERRPLRREAL-------------NPLASFRWARGMTVVAALMAV-FFIMQLVGQVP 229

Query: 247 LTWFPSYLNHSLHLDIKEISIATVIPWVIGAIGMVLGGVCSDVIYRITGNALLSRRLILG 306
+ + H D I I+ G + + + + + L R L
Sbjct: 230 AALWVIFGEDRFHWDATTIGISLA---AFGILHSLAQAMITGPVAA-----RLGERRALM 281

Query: 307 VCLAGAAVCVAVSGTVSTIGSAITLMSVSLFLLYLTGPIYWAVIQDVVHKDKVGSVGGAM 366
+ + + + A +M V L + P A++ V +++ G + G++
Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIM-VLLASGGIGMPALQAMLSRQVDEERQGQLQGSL 340

Query: 367 HGLANISGIIGPLVTGFIVQFS-GKYDYAFYLAGAI 401
L +++ I+GPL+ I S ++ ++AGA
Sbjct: 341 AALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAA 376



Score = 32.9 bits (75), Expect = 0.002
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 299 LSRRLILGVCLAGAAVCVAVSGTVST-----IGSAITLMSVSLFLLYLTGPIYWAVIQDV 353
RR +L V LAGAAV A+ T IG + ++ + TG + A I D+
Sbjct: 70 FGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA------TGAVAGAYIADI 123

Query: 354 VHKDKVGSVGGAMHGLANISGIIGPLVTGFIVQFSGKYDYAFYLAGAIAIVSSLLVFVFV 413
D+ G M + GP++ G + FS F+ A A+ ++ L +
Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHA--PFFAAAALNGLNFLTGCFLL 181

Query: 414 K 414

Sbjct: 182 P 182


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0987TCRTETA1502e-43 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 150 bits (380), Expect = 2e-43
Identities = 96/369 (26%), Positives = 167/369 (45%), Gaps = 6/369 (1%)

Query: 20 RRILPVFLLVGLYAASTAAVMSVLPFYIREMGGSPLII---GIIIATEAFSQFCAAPLIG 76
R ++ + V L A +M VLP +R++ S + GI++A A QF AP++G
Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64

Query: 77 HLSDRVGRKRILIVTLAIAAISLLLLANAQCILFILLARTLFGISAGNLSAAAAYIADCT 136
LSDR GR+ +L+V+LA AA+ ++A A + + + R + GI+ + A AYIAD T
Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124

Query: 137 HVRNRRQAIGILTGCIGLGGIVGAGVSGWLSRISLSAPIYAAFILVLGAALVAIWGLKDP 196
R + G ++ C G G + G + G + S AP +AA L L + L +
Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184

Query: 197 STTSRTTDKIASFSARAILKMPVLRVLIIVMLCHFFAYGMYSSQLPVFLSDTFIWNGLPF 256
R + + + A + ++ ++ FF + Q+P L F + +
Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLV-GQVPAALWVIFGEDRFHW 243

Query: 257 GPKALSYLLMADGVINIFVQLFLLGWVSQYFSERKLIILIFALLCTGFLTAGIATTIPVL 316
+ L A G+++ Q + G V+ ER+ ++L TG++ AT +
Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMA 303

Query: 317 IFAIVCISIADALAKPTYLAALSVHVSPARQGIVIGTAQALIAIADFISPVLGGLVLGYA 376
+V + + + P A LS V RQG + G+ AL ++ + P+L + +
Sbjct: 304 FPIMVLL-ASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362

Query: 377 LYGVWIGIA 385
+ W G A
Sbjct: 363 I-TTWNGWA 370


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1000IGASERPTASE408e-06 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 40.0 bits (93), Expect = 8e-06
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 16/140 (11%)

Query: 44 KYVQGDYDSYNSDTETAINLLLTVEPQPQSPEQIDARKIL----AAQLVDETVKKEIISL 99
+ V G YD YN + E + T + Q D + VDE +
Sbjct: 972 RNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP---VPPP 1028

Query: 100 EQSLEENQAKADAEYQKMQSMSKEEKEQAAAEAAKEKALAAKEA---------AEKKAAA 150
+ + AE K +S + E+ EQ A E + AKEA + A +
Sbjct: 1029 APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS 1088

Query: 151 AAMKANAAREKAEATSDVDE 170
+ + + T+ V++
Sbjct: 1089 GSETKETQTTETKETATVEK 1108



Score = 33.5 bits (76), Expect = 0.001
Identities = 19/128 (14%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 66 TVEPQPQSPEQIDARKILAAQLVDETVKKEIISLEQSLEENQAKADAEYQKMQSMSKEEK 125
TVE Q + A+ + V + K + + Q+ E Q+ ++ + + + +KE
Sbjct: 1050 TVEKNEQDATETTAQ----NREVAKEAKSNVKANTQTNEVAQSGSETK-ETQTTETKETA 1104

Query: 126 EQAAAEAAKEKALAAKEAAEKKAAAAAMKANAAREKAEATSDVDEMLGELGSGKSAPKTH 185
E AK + +E + + + + + + +A + +
Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164

Query: 186 TSTSSGGA 193
T+ + A
Sbjct: 1165 TADTEQPA 1172


16SeKA_A1078SeKA_A1088Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1078-219-3.607281methyl-accepting chemotaxis protein III
SeKA_A1079125-7.398444S-(hydroxymethyl)glutathione dehydrogenase/class
SeKA_A1080435-10.729826putative cytoplasmic protein
SeKA_A1081436-11.326523hypothetical protein
SeKA_A1084434-11.225888secreted effector protein
SeKA_A1085232-9.678044cyanate transport
SeKA_A1086232-9.528657putative periplasmic amino acid-binding protein
SeKA_A1087230-8.400223putative ABC transporter permease component
SeKA_A1088025-6.548151ABC transporter ATP-binding subunit
17SeKA_A1104SeKA_A1132Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1104126-6.422024conserved hypothetical protein
SeKA_A1105023-6.031592pyruvate:ferredoxin (flavodoxin) oxidoreductase
SeKA_A1107333-8.676437hypothetical protein
SeKA_A1108230-7.206452universal stress protein F
SeKA_A1109129-6.876837multidrug transporter EmrE
SeKA_A1110129-6.938724conserved hypothetical protein
SeKA_A1111-215-1.618026YdaO
SeKA_A1112-219-1.227679ATP-independent RNA helicase DbpA
SeKA_A1114021-1.992518zinc transport protein ZntB
SeKA_A1115018-2.745723methyl-accepting chemotaxis sensory transducer
SeKA_A1116-116-1.930672conserved hypothetical protein
SeKA_A1117-115-1.483926hypothetical protein
SeKA_A1118-114-3.333348Smr protein/MutS2
SeKA_A1119014-3.441984methylated-dna--protein-cysteine
SeKA_A1120-114-3.445399fumarate and nitrate reduction regulatory
SeKA_A1121-116-4.063177universal stress protein E
SeKA_A1122-119-5.200086putative inner membrane protein
SeKA_A1123024-6.768104MscS family inner membrane protein YnaI
SeKA_A1124224-4.748337transcriptional regulator, Cro/CI family
SeKA_A1125427-5.091146B3/4 domain protein
SeKA_A1126530-7.411008conserved hypothetical protein
SeKA_A1127633-7.937546putative thiol peroxidase
SeKA_A1128633-7.907917putative outer membrane or exported
SeKA_A1129430-5.850460conserved hypothetical protein
SeKA_A1130230-5.843207conserved hypothetical protein
SeKA_A1131127-6.224087putative regulatory protein
SeKA_A1132-125-4.435467putative cytoplasmic protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1129INTIMIN2151e-61 Intimin signature.
		>INTIMIN#Intimin signature.

Length = 939

Score = 215 bits (548), Expect = 1e-61
Identities = 116/412 (28%), Positives = 186/412 (45%), Gaps = 27/412 (6%)

Query: 29 SDNEIQSWIAGTASSISPHLQEGTLE-DYAKGKIKALPGQAANHLVNEGIKSAFPEIIFR 87
+D++ ++ A A+S+ LQ +L DYAK + G A+ S +
Sbjct: 158 TDDKALNYAAQQAASLGSQLQSRSLNGDYAKDTALGIAGNQAS--------SQLQAWLQH 209

Query: 88 GG---VNLEDGAKYRSSEFDMFIPVQETTSSLLFGQLGFRDHDNSSFDGRTYVNVGMGYR 144
G VNL+ G + S D +P ++ L FGQ+G R D+ R N+G G R
Sbjct: 210 YGTAEVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDS-----RFTANLGAGQR 264

Query: 145 QEVNGWLFGVNTFLDADIRYSHLRGGIGGEVYKDSLAFSGNYYFPLTGWKTSAVHELHDE 204
+ + G N F+D D + R GIGGE ++D S N YF ++GW S + +DE
Sbjct: 265 FFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDE 324

Query: 205 RPAYGFDLRTKGTLPDFPWFSGELTYEQYYGDKVDLLGNGTLSRNPRAAGAALVWNPVPL 264
RPA GFD+R G LP +P +L YEQYYGD V L + L NP AA + + P+PL
Sbjct: 325 RPANGFDIRFNGYLPSYPALGAKLMYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPL 384

Query: 265 LEVRAGYRDAGNGGSQAEGGLRVNYSFGTPLHEQLDYRNV-GAPSNTTNRHAFVDRNYDI 323
+ + YR + ++ Y F P +Q++ + V + + +R+ V RN +I
Sbjct: 385 VTMGIDYRHGTGNENDLLYSMQFRYQFDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNI 444

Query: 324 VMAYREQAS-KIRITAMPVSGLSGTLVTLMATVDSRYPIEKVEWSGDAELLAGLQLQGSL 382
++ Y++Q + I ++G + + V S+Y ++++ W A G Q+Q S
Sbjct: 445 ILEYKKQDILSLNIPH-DINGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSG 503

Query: 383 GSG-----LILPQLPLTATDGQEYSLYLTVTDSRGTRVTSERIPVRVTQDET 429
ILP Y + D G + + + V +
Sbjct: 504 SQSAQDYQAILP--AYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQ 553


18SeKA_A1182SeKA_A1194Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1182-1123.188393oxidoreductase, short chain
SeKA_A1183-1113.343064cob(I)yrinic acid a,c-diamide
SeKA_A1184-2113.218943ribosomal large subunit pseudouridine synthase
SeKA_A1185-2123.169881Sua5/YciO/YrdC/YwlC family protein
SeKA_A1186-1123.578226putative phosphoesterase
SeKA_A1188-1143.539077anthranilate synthase, component I
SeKA_A11891141.824346anthranilate synthase, component II
SeKA_A1190216-0.226676tryptophan biosynthesis protein trpCF
SeKA_A1191218-0.804976tryptophan synthase, beta subunit
SeKA_A1192020-1.942039tryptophan synthase, alpha subunit
SeKA_A1193-122-3.571882conserved domain protein
SeKA_A1194-119-3.343775protein YciF
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1182DHBDHDRGNASE952e-25 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 94.7 bits (235), Expect = 2e-25
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 22/242 (9%)

Query: 10 LQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIADEQHVQPQWFTL 69
++ +I +TGA+ GIG A T A GA + + N EKL +V + E F
Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA-FPA 64

Query: 70 DLLTCTAEECRQVADRIAAHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDVMQVNVNATF 129
D+ + ++ RI +D +++ AG+L G + + W+ VN F
Sbjct: 65 DV--RDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVF 121

Query: 130 MLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYATSKFATEGMMQVLADEYQNRSLR 189
++++ ++ +GS+V S+ R + AYA+SK A + L E ++R
Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181

Query: 190 VNCINPGGTRTSMRASAFPTEDPQ------------------KLKTPADIMPLYLWLMGD 231
N ++PG T T M+ S + E+ KL P+DI L+L+
Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241

Query: 232 DS 233
+
Sbjct: 242 QA 243


19SeKA_A1209SeKA_A1219Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1209015-3.434678oligopeptide ABC transporter, ATP-binding
SeKA_A1210-216-2.527949oligopeptide ABC transporter, permease protein
SeKA_A1211-217-3.055648oligopeptide ABC transporter, permease protein
SeKA_A1212023-3.485707periplasmic oligopeptide-binding protein
SeKA_A1213129-2.832090hypothetical protein
SeKA_A1214025-2.169174putative membrane protein
SeKA_A1215023-2.150207aldehyde-alcohol dehydrogenase
SeKA_A1216-222-3.676296thymidine kinase
SeKA_A1217-219-3.354767H-NS histone family protein
SeKA_A1218-119-3.173713UTP-glucose-1-phosphate uridylyltransferase
SeKA_A1219021-3.224950response regulator receiver domain
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1219HTHFIS869e-21 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 86.0 bits (213), Expect = 9e-21
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 3/152 (1%)

Query: 10 ILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDALELMGRFTPDLMICDIAMPRMNGLKL 69
IL+ +D+ R++L+ S G + + + DL++ D+ MP N L
Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

Query: 70 VENLRNRGDQTPILVISATENMADIAKALRLGVEDVLLKPVKDLNRLRETVFACLYPNMF 129
+ ++ P+LV+SA KA G D L KP DL L + L
Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGRAL--AEP 122

Query: 130 NSRVEEEERLFRDWDAMVSNPTAAAQLLQELQ 161
R + E +D +V A ++ + L
Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154


20SeKA_A1245SeKA_A1267Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1245-1183.210973protein sirB2
SeKA_A12460163.234829protein-(glutamine-N5) methyltransferase,
SeKA_A12470182.685233peptide chain release factor 1
SeKA_A12480181.817770glutamyl-tRNA reductase
SeKA_A1249-1161.904531hypothetical protein
SeKA_A1250-1161.888965outer membrane lipoprotein LolB
SeKA_A1251-1141.4130544-(cytidine
SeKA_A1252-2211.081300hypothetical protein
SeKA_A1253-318-1.709467ribose-phosphate pyrophosphokinase
SeKA_A1254-118-4.181990sulfate permease
SeKA_A1255131-10.344900conserved hypothetical protein
SeKA_A1256131-10.743389peptidyl-tRNA hydrolase
SeKA_A1257226-8.443353GTP-binding protein EngD
SeKA_A1258222-6.579258conserved hypothetical protein
SeKA_A1259217-3.575522conserved hypothetical protein
SeKA_A1260216-1.321019putative cytoplasmic protein
SeKA_A12611192.834939hypothetical protein
SeKA_A12621183.539174hydrogenase-1 small chain
SeKA_A12631163.350593hydrogenase-1 large chain
SeKA_A12642173.441143Ni/Fe-hydrogenase, B-type cytochrome subunit
SeKA_A12652153.511268hydrogenase expression/formation protein
SeKA_A12662143.403478hydrogenase-1 operon protein HyaE
SeKA_A12672132.988923hydrogenase-1 operon protein HyaF
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1247RTXTOXIND320.004 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 31.7 bits (72), Expect = 0.004
Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 9 LEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLS-DVSRCFTDWQQVQDDIETAQM 67
R ++ +LL I + +Y + ++ + +Q++ +I +A+
Sbjct: 230 SRVEKSRLDDFSSLLHKQAI--AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287

Query: 68 MLD--DPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRA 117
+ ++LR+ + L +L +ER +RA
Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN-------EERQQASVIRA 332


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1254RTXTOXINA310.014 Gram-negative bacterial RTX toxin determinant A family...
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

signature.
Length = 1024

Score = 31.1 bits (70), Expect = 0.014
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 16/81 (19%)

Query: 288 LGAIESLLCAV----VL---DGMTGTKHKANSELIGQGLGNM---VAPFF------GGIT 331
L + +L A+ +L D T TK A EL + LGN+ ++ + G++
Sbjct: 242 LDTVSGILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLS 301

Query: 332 ATAAIARSAANVRAGATSPIS 352
+AA A A+ A SP+S
Sbjct: 302 TSAAAAGLIASAVTLAISPLS 322


21SeKA_A1330SeKA_A1400Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1330032-6.442931conserved domain protein
SeKA_A1331232-6.924587conserved domain protein
SeKA_A1332333-9.084602serine/threonine-protein phosphatase 1
SeKA_A1333335-9.878777conserved hypothetical protein
SeKA_A1334335-10.670917conserved hypothetical protein
SeKA_A1335333-9.964151guanine nucleotide exchange factor SopE
SeKA_A1336232-10.489089hypothetical protein
SeKA_A1337334-11.907397putative cytoplasmic protein
SeKA_A1338536-9.490488conserved hypothetical protein
SeKA_A1339546-14.219868methyl-accepting chemotaxis sensory transducer
SeKA_A1340444-13.128778hypothetical protein
SeKA_A1341826-1.180225hypothetical protein
SeKA_A1342826-0.849163hypothetical protein
SeKA_A1343827-0.362609hypothetical protein
SeKA_A1344632-7.421815hypothetical protein
SeKA_A1346633-7.567150hypothetical protein
SeKA_A1347322-3.025496leucine-rich repeat protein
SeKA_A1348224-4.069171hypothetical protein
SeKA_A1350224-3.987236hypothetical protein
SeKA_A1351224-3.795379hypothetical protein
SeKA_A1352322-0.917439hypothetical protein
SeKA_A1353321-0.804649conserved hypothetical protein
SeKA_A1354629-2.180168conserved hypothetical protein
SeKA_A1355526-1.799315conserved hypothetical protein
SeKA_A1356525-2.402727conserved hypothetical protein
SeKA_A1357526-3.202574conserved hypothetical protein
SeKA_A1358525-3.907250conserved hypothetical protein
SeKA_A1359526-3.850675conserved hypothetical protein
SeKA_A1360323-4.504336conserved hypothetical protein
SeKA_A1361332-4.042774hypothetical protein
SeKA_A1362332-2.943475hypothetical protein
SeKA_A1363329-1.858257conserved hypothetical protein
SeKA_A1364427-1.705968conserved hypothetical protein
SeKA_A1365427-1.297036conserved hypothetical protein
SeKA_A1366523-0.865446tail fiber protein
SeKA_A1367622-0.641394conserved hypothetical protein
SeKA_A1368619-0.550746conserved hypothetical protein
SeKA_A1369619-0.886993conserved hypothetical protein
SeKA_A1370619-0.805036conserved hypothetical protein
SeKA_A1371618-1.030284conserved hypothetical protein
SeKA_A1372519-0.910730conserved hypothetical protein
SeKA_A1373318-0.634062putative phage portal protein
SeKA_A1375120-1.197010large subunit terminase
SeKA_A1376127-2.908223putative prophage terminase small subunit
SeKA_A1377027-4.487428conserved hypothetical protein
SeKA_A1378530-0.277661bacteriophage lysis protein
SeKA_A1379533-1.028447lysozyme
SeKA_A1380733-1.385926conserved hypothetical protein
SeKA_A1381632-1.108344conserved hypothetical protein
SeKA_A1382631-0.617538hypothetical protein
SeKA_A1383630-0.408372hypothetical protein
SeKA_A1384422-2.941831antitermination protein Q
SeKA_A1385324-1.243406conserved hypothetical protein
SeKA_A1386224-0.774390IrsA
SeKA_A1387225-1.836683hypothetical protein
SeKA_A1388327-1.480634conserved hypothetical protein
SeKA_A1389127-2.177734replication P family protein
SeKA_A1390231-4.547669conserved hypothetical protein
SeKA_A1391225-4.219316conserved hypothetical protein
SeKA_A1392325-4.787451putative regulator
SeKA_A1393425-4.283838hypothetical protein
SeKA_A1394424-4.075827conserved hypothetical protein
SeKA_A1395424-3.818306LygB
SeKA_A1396424-3.639120exodeoxyribonuclease VIII
SeKA_A1397428-4.483377gifsy-1 prophage protein
SeKA_A1398229-5.086872gp46
SeKA_A1399026-4.517071conserved hypothetical protein
SeKA_A1400024-3.270182hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1335SOPEPROTEIN2693e-95 Salmonella type III secretion SopE effector protein ...
		>SOPEPROTEIN#Salmonella type III secretion SopE effector protein

signature.
Length = 239

Score = 269 bits (689), Expect = 3e-95
Identities = 111/152 (73%), Positives = 129/152 (84%)

Query: 1 MLQKLNSLDIKGNASKDPAYARQTCEAMLSAVYSNNKDHCCKLLISKGVSITPFLKEIGE 60
MLQ LN +DI+G+ASKDPAYA QT EA+LSAVYS NKD CC LLISKG++I PFL+EIGE
Sbjct: 86 MLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGE 145

Query: 61 AAQNAGLPGEIKNGVFTPGGAGANPFVVPLIAAASIKYPHMFINHNQQVSFKAYAEKIVM 120
AA+NAGLPG KN VFTP GAGANPF+ PLI++A+ KYP MFIN +QQ SFK YAEKI+M
Sbjct: 146 AAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIM 205

Query: 121 KEVTPLFNKGTMPTPQQFQLTIENIANKHLQN 152
EV PLFN+ MPTPQQFQL +ENIANK++QN
Sbjct: 206 TEVAPLFNECAMPTPQQFQLILENIANKYIQN 237


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1351PF06580300.033 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 29.8 bits (67), Expect = 0.033
Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 402 ALIHGSENIKNNPKIVLSAVKQNGKAIMLASDN 434
+ HG + KI+L K NG + +
Sbjct: 267 GIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1353IGASERPTASE388e-04 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 37.7 bits (87), Expect = 8e-04
Identities = 48/273 (17%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 541 VGEMQGKPRNEILAEYRELNEKDKRNATEQMRWEAAREVLRPQPEATE-QPQPAQDTFAQ 599
NE +A E AT E E + + + E Q A +T AQ
Sbjct: 1005 ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064

Query: 600 NTARHPLYDTDNLDVPTFMRDPRFRDFTDEPTEVQQHLTRRNAPTPEELVHEQMAKGDTG 659
N + +V + E E Q + E+ AK +T
Sbjct: 1065 NRE---VAKEAKSNVKANTQTNEVAQSGSETKETQ----TTETKETATVEKEEKAKVETE 1117

Query: 660 PTDYELA----ERPRLPSPGDIHPGQGYPMPGEVRHMSDEPPAGRGGRYTTTGEVLEQSY 715
T P+ + P Q P ++ + P + T + +++
Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQP-QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176

Query: 716 EKGRQSASPESVQRKGETFRGEQSYRELPAPEHQGLPRPEEVKPENTE-TVNTERDTTPE 774
Q + + G + PE P T+ TVN+E P+
Sbjct: 1177 SNVEQPVTESTTVNTG------------NSVVEN----PENTTPATTQPTVNSESSNKPK 1220

Query: 775 VDEGEQNQSQPGVQEQAKTESPRAVTEKSGEKI 807
+S P E A T S T +
Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCDLT 1253


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1355TRNSINTIMINR322e-04 Translocated intimin receptor (Tir) signature.
		>TRNSINTIMINR#Translocated intimin receptor (Tir) signature.

Length = 549

Score = 31.6 bits (71), Expect = 2e-04
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 7 DAANQTRQQALQSLGEADQLNEQREMMNKQMKEQASMQKKQNIGSGLGTGAALGFAVGGP 66
+A RQQA++S +A Q E + A Q++ + SG+G G + V G
Sbjct: 327 EAGEVARQQAVESNAQAQQRYED---------QHARRQEELQLSSGIGYGLSSALIVAGG 377

Query: 67 IGAGIGA 73
IGAG+
Sbjct: 378 IGAGVTT 384


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1364PF05272290.014 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 28.9 bits (64), Expect = 0.014
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 16/90 (17%)

Query: 42 IATKNDPEPYGVLLYNDLVSGKYGQIVPFTATPEMLQAAKDTRRAEVCAWRDAQENGNYL 101
A ++ P G + +++ P ++A R DA L
Sbjct: 457 EALRSAPALAGCVAFDE-----------LREQPVAVRAFP--WRKAPGPLEDADVLR--L 501

Query: 102 FDYNGHRWDYGK-STQDRMSISLVMAKRNA 130
DY + G+ S Q V A N
Sbjct: 502 ADYVETTYGTGEASAQTTEQAINVAADMNR 531


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1366CHANLCOLICIN340.001 Channel forming colicin signature.
		>CHANLCOLICIN#Channel forming colicin signature.

Length = 522

Score = 34.3 bits (78), Expect = 0.001
Identities = 46/223 (20%), Positives = 79/223 (35%), Gaps = 10/223 (4%)

Query: 143 ASAESAARSEADAADSEKKAEQFARNLQDAVAKAGDSASAAALSAAGAGEQATAAKS--- 199
A AE AR EA+AA+ KA Q A + + + + + L A A E+ AA S
Sbjct: 133 AKAEEKARKEAEAAE---KAFQEAEQRRKEIERE-KAETERQLKLAEAEEKRLAALSEEA 188

Query: 200 AALEAADSKAATEKAASNAALSEKNAADSALAARTSENSAADSATKADASEKAAVLYEQT 259
A+E A K + ++ E +S L++ A +E A +
Sbjct: 189 KAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYK 248

Query: 260 SSTHETNAGQSAADAALSAT---KAADSALNAGKSATEAAGYATDAQTQAGNAKRAATDA 316
A+ L +A + AGK E T ++T+ T
Sbjct: 249 ELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQI 308

Query: 317 TTAKDEIVRQISGFDEHVSQQETVITAKGQTLVDQARTEAINA 359
A ++ + V + E + L++ +A++A
Sbjct: 309 QKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDA 351


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A137356KDTSANTIGN300.031 Rickettsia 56kDa type-specific antigen protein sign...
		>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein

signature.
Length = 533

Score = 30.3 bits (68), Expect = 0.031
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 16/98 (16%)

Query: 611 PEEQQQAQQQQEIQQQQMELQ-------MREMEG--KVAKLEADAAKAQ-----AAAQKD 656
P + QQ Q Q + QQ Q Q +R + G ++A+L D K Q A +
Sbjct: 337 PPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKDLVKLQRHAGIRKAMEK 396

Query: 657 AAAAQLDTAKAQGQRYVDALNQANAADILTGIQNSEQE 694
AA Q + AK QG+ D Q A++ + E E
Sbjct: 397 LAAQQEEDAKNQGKG--DCKQQQGASEKSKEGKVKETE 432


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1396cloacin310.025 Cloacin signature.
		>cloacin#Cloacin signature.

Length = 551

Score = 31.2 bits (70), Expect = 0.025
Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 437 TPEAVEQDTTEHHPDPQPLENEPPVSQTEAGYQKIRAELHEARKNI 482
+P+ V+Q E + Q + PV E Y++ RAEL++A +++
Sbjct: 292 SPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDV 337


22SeKA_A1491SeKA_A1518Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1491115-3.112600cystine-binding periplasmic protein
SeKA_A1493116-3.394644RNA polymerase sigma factor for flagellar
SeKA_A1494117-4.114317lysine-N-methylase
SeKA_A1495116-3.585200flagellin
SeKA_A1496-212-2.557900hypothetical protein
SeKA_A1497-311-0.700022flagellar hook-associated protein 2
SeKA_A1498-3150.117750flagellar protein FliS
SeKA_A1499-215-0.536607flagellar protein FliT
SeKA_A1500-114-0.203592cytoplasmic alpha-amylase
SeKA_A15012160.053967YedD
SeKA_A1502-1131.204464putative membrane protein
SeKA_A1503-2150.584970conserved hypothetical protein
SeKA_A1504-1112.002410putative 50S ribosomal protein
SeKA_A1505-1134.208162flagellar hook-basal body complex protein
SeKA_A15060133.873503conserved hypothetical protein
SeKA_A15070135.163869flagellar M-ring protein FliF
SeKA_A15080155.275822flagellar motor switch protein FliG
SeKA_A1509-1164.791800flagellar assembly protein FliH
SeKA_A1510-2154.113742flagellar protein export ATPase FliI
SeKA_A15111153.464700flagellar protein FliJ
SeKA_A1512-1163.495522flagellar hook-length control protein
SeKA_A1513-1141.179890flagellar basal body-associated protein FliL
SeKA_A15140130.431647flagellar motor switch protein FliM
SeKA_A1515015-2.318586flagellar motor switch protein FliN
SeKA_A1516016-2.718869flagellar protein FliO
SeKA_A1517017-4.269019flagellar biosynthetic protein FliP
SeKA_A1518018-3.695614flagellar biosynthetic protein FliQ
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1495FLAGELLIN2783e-90 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

Length = 507

Score = 278 bits (713), Expect = 3e-90
Identities = 257/509 (50%), Positives = 302/509 (59%), Gaps = 17/509 (3%)

Query: 2 AQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGL 61
AQVINTNSLSLLTQNNLNKSQS+L +AIERLSSGLRINSAKDDAAGQAIANRFT+NIKGL
Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60

Query: 62 TQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN 121
TQASRNANDGISIAQTTEGALNEINNNLQRVREL+VQ+ N TNS SDL SIQ EI QRL
Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120

Query: 122 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKV 181
EIDRVS QTQFNGVKVL+QDN + IQVGANDGETI IDL++I+ ++LGLD NV +
Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEA 180

Query: 182 SDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTG 241
+ + T D A+ + + D K Y T
Sbjct: 181 TVGDLKSSFKNVTGY--DTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238

Query: 242 KDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGV 301
D +VD + AG A + G E + K G
Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298

Query: 302 TGTAS----VVKMSYTDNNGKTIDGGLAVKVGDDYYSA-----------TQNKDGSISIN 346
T V G ++ + Y++ T+N+ +S
Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL 358

Query: 347 TTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTE 406
+ T A+ + V++ GKT K + A AA +T
Sbjct: 359 EANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTA 418

Query: 407 NPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSARSRIEDSDYATEVSNM 466
NPL ID+AL++VD +RS LGA+QNRF+SAITNLGNTV NL SARSRIED+DYATEVSNM
Sbjct: 419 NPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNM 478

Query: 467 SRAQILQQAGTSVLAQANQVPQNVLSLLR 495
S+AQILQQAGTSVLAQANQVPQNVLSLLR
Sbjct: 479 SKAQILQQAGTSVLAQANQVPQNVLSLLR 507


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1502RTXTOXIND290.025 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 29.4 bits (66), Expect = 0.025
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 164 RFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRF--RLGMLVFIGMIGWALLT 214
R L R + + + A L + P R R M + ++L
Sbjct: 26 RKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLG 78


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1503PF01206936e-29 SirA family protein
		>PF01206#SirA family protein

Length = 76

Score = 92.5 bits (230), Expect = 6e-29
Identities = 16/71 (22%), Positives = 37/71 (52%)

Query: 7 DYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQ 66
D LD G CP P + + + + GE+L V++ P S+ + ++ G+ +L+ ++
Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64

Query: 67 DGPTIRYLIQK 77
+ T + +++
Sbjct: 65 EDGTYHFRLKR 75


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1505FLGHOOKFLIE1102e-35 Flagellar hook-basal body complex protein FliE signa...
		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE

signature.
Length = 103

Score = 110 bits (277), Expect = 2e-35
Identities = 90/103 (87%), Positives = 95/103 (92%)

Query: 2 AAIQGIEGVISQLQATAMAASGQETHSQSTVSFAGQLHAALDRISDRQTAARVQAEKFTL 61
+AIQGIEGVISQLQATAM+A QE+ Q T+SFAGQLHAALDRISD QTAAR QAEKFTL
Sbjct: 1 SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 60

Query: 62 GEPGIALNDVMADMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 104
GEPG+ALNDVM DMQKASVSMQMGIQVRNKLVAAYQEVMSMQV
Sbjct: 61 GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1507FLGMRINGFLIF7910.0 Flagellar M-ring protein signature.
		>FLGMRINGFLIF#Flagellar M-ring protein signature.

Length = 559

Score = 791 bits (2043), Expect = 0.0
Identities = 558/559 (99%), Positives = 559/559 (100%)

Query: 21 SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQ 80
SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQ
Sbjct: 1 SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQ 60

Query: 81 DGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKF 140
DGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKF
Sbjct: 61 DGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKF 120

Query: 141 GISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLE 200
GISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLE
Sbjct: 121 GISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLE 180

Query: 201 PGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDV 260
PGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDV
Sbjct: 181 PGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDV 240

Query: 261 ESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNIS 320
ESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNIS
Sbjct: 241 ESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNIS 300

Query: 321 EQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRN 380
EQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRN
Sbjct: 301 EQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRN 360

Query: 381 ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMG 440
ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMG
Sbjct: 361 ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMG 420

Query: 441 FSDKRGDTLNVVNSPFSAVDDTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR 500
FSDKRGDTLNVVNSPFSAVD+TGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR
Sbjct: 421 FSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR 480

Query: 501 PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 560
PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD
Sbjct: 481 PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 540

Query: 561 NDPRVVALVIRQWMSNDHE 579
NDPRVVALVIRQWMSNDHE
Sbjct: 541 NDPRVVALVIRQWMSNDHE 559


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1508FLGMOTORFLIG339e-118 Flagellar motor switch protein FliG signature.
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

Length = 344

Score = 339 bits (870), Expect = e-118
Identities = 114/329 (34%), Positives = 196/329 (59%), Gaps = 2/329 (0%)

Query: 1 MSNLSGTDKSVILLMTIGEDRAAEVFKHLSTREVQALSTAMANVRQISNKQLTDVLSEFE 60
+S L+G K+ ILL++IG + +++VFK+LS E+++L+ +A + I+++ +VL EF+
Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71

Query: 61 QEAEQFAALNINANEYLRSVLVKALGEERASSLLEDILETRDTTSGIETLNFMEPQSAAD 120
+ + +Y R +L K+LG ++A ++ + L + + E + +P + +
Sbjct: 72 ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINN-LGSALQSRPFEFVRRADPANILN 130

Query: 121 LIRDEHPQIIATILVHLKRSQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN 180
I+ EHPQ IA IL +L +A+ IL+ ++ +V RIA P + E+ VL
Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190

Query: 181 GLLDGQ-NLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENL 239
L + + GGV EIIN+ + E+ +I ++ E D ELA++I +MF+FE++
Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250

Query: 240 VDVDDRSIQRLLQEVDSESLLIALKGAEPPLREKFLRNMSQRAADILRDDLANRGPVRLS 299
V +DDRSIQR+L+E+D + L ALK + P++EK +NMS+RAA +L++D+ GP R
Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310

Query: 300 QVENEQKAILLIVRRLAETGEMVIGSGED 328
VE Q+ I+ ++R+L E GE+VI G +
Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGE 339


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1509FLGFLIH367e-133 Flagellar assembly protein FliH signature.
		>FLGFLIH#Flagellar assembly protein FliH signature.

Length = 228

Score = 367 bits (944), Expect = e-133
Identities = 192/235 (81%), Positives = 209/235 (88%), Gaps = 7/235 (2%)

Query: 1 MSNELPWQVWTPDDLAPPPETFVPVEADNVTLTDDTPEPELTAEQQLEQELAQLKIQAHE 60
MS+ LPW+ WTPDDLAPP FVP+ T+ ++ AE LEQ+LAQL++QAHE
Sbjct: 1 MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEE-------AEPSLEQQLAQLQMQAHE 53

Query: 61 QGYNAGLAEGRQKGHAQGYQEGLAQGLEQGQAQAQTQQAPIHARMQQLVSEFQNTLDALD 120
QGY AG+AEGRQ+GH QGYQEGLAQGLEQG A+A++QQAPIHARMQQLVSEFQ TLDALD
Sbjct: 54 QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALD 113

Query: 121 SVIASRLMQMALEAARQVIGQTPAVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRV 180
SVIASRLMQMALEAARQVIGQTP VDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRV
Sbjct: 114 SVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRV 173

Query: 181 EEMLGATLSLHGWRLRGDPTLHHGGCKVSADEGDLDASVATRWQELCRLAAPGVL 235
++MLGATLSLHGWRLRGDPTLH GGCKVSADEGDLDASVATRWQELCRLAAPGV+
Sbjct: 174 DDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1511FLGFLIJ2064e-72 Flagellar FliJ protein signature.
		>FLGFLIJ#Flagellar FliJ protein signature.

Length = 147

Score = 206 bits (526), Expect = 4e-72
Identities = 130/147 (88%), Positives = 138/147 (93%)

Query: 1 MAQHGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNG 60
MA+HGAL TLKDLAEKEV+DAARLLGEMRRGCQQAEEQLKMLIDYQNEYR+NLN+DM G
Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

Query: 61 IASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTA 120
I SNRWINYQQFIQTLEKAI QHR QL QWTQKVD+AL SWREKKQRLQAWQTLQ+RQ+
Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

Query: 121 AALLAENRMDQKKMDEFAQRAAMRKPE 147
AALLAENR+DQKKMDEFAQRAAMRKPE
Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1512FLGHOOKFLIK403e-142 Flagellar hook-length control protein signature.
		>FLGHOOKFLIK#Flagellar hook-length control protein signature.

Length = 375

Score = 403 bits (1037), Expect = e-142
Identities = 192/411 (46%), Positives = 232/411 (56%), Gaps = 40/411 (9%)

Query: 1 MITLPQLITTDTDMTAGLTSGKTTGSAEDFLALLAGALGADGAQGKDARITLADLQAAGG 60
MI L LIT D D T L GK + +A+DFLALL+ AL + K A L
Sbjct: 1 MIRLAPLITADVDTTT-LPGGKASDAAQDFLALLSEALAGETTTDKAAPQLL-------- 51

Query: 61 KLSKELLTQHGEPGQAVKLADLLAQKAN---ATDGTLTDLTQAQHLLSTLTPSLKTSALA 117
++ + T GEP + ++D AQ+AN D T + Q + LT + + A
Sbjct: 52 -VATDKPTTKGEPLISDIVSD--AQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAA 108

Query: 118 ALSKTAQHDEKTPALSDEDLASLSALFAMLPGQPVATPVAGETPAENHIALPSLLRGDMP 177
K DEK L+++ ASLSALFAMLPG V D P
Sbjct: 109 VADKNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVT-----------------DAP 151

Query: 178 SAPQEETHTLSFSEHEKGKTEASLARASDDRATGPSLTPLVVAAAATSAKVEVDSPPAPV 237
S F++ T L A D A G PL A +K EV S P+PV
Sbjct: 152 STVLPTEKPTLFTK----LTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPV 207

Query: 238 THGAAMPTLSSATAQPQPLPVASAPVLSAPLGSHEWQQTFSQQVMLFTRQGQQSAQLRLH 297
T AA P ++ QP LP +APVLSAPLGSHEWQQ+ SQ + LFTRQGQQSA+LRLH
Sbjct: 208 T-AAASPLITPHQTQP--LPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLH 264

Query: 298 PEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSES 357
P++LG+V ISLK+DDNQAQ+QMVSPH HVRAALEAALP+LRTQLAESGIQLGQS+IS ES
Sbjct: 265 PQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGES 324

Query: 358 FAGQQQ-SSSQQQSARAQHPDAFGAEDDIALAAPASLQAAARGNGAVDIFA 407
F+GQQQ +S QQQS R + + EDD L P SLQ GN VDIFA
Sbjct: 325 FSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA 375


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1514FLGMOTORFLIM383e-135 Flagellar motor switch protein FliM signature.
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

Length = 344

Score = 383 bits (985), Expect = e-135
Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 10/324 (3%)

Query: 5 ILSQAEIDALLNGDS--DTKDEPTPGIASDSDIRPYDPNTQRRVVRERLQALEIINERFA 62
+LSQ EID LL S D E I+ I YD + +E+++ L +++E FA
Sbjct: 4 VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63

Query: 63 RQFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122
R L LR + V ++ Y EF R++P P+ L +I + PL+G ++ PS+
Sbjct: 64 RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123

Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182
F +D LFGG G+ KV+ R+ T E V+ ++ L ++W + L +
Sbjct: 124 TFSIIDRLFGGTGQ-AAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181

Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS--R 240
E +F I P+++VV ++G G N C+P+ IEP+ L + +S R
Sbjct: 182 ETNPQFAQI-VPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240

Query: 241 HEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP---DRIIAHVD 297
+ L ++ ++++VA + L + IL L+ GD++ + D + +
Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300

Query: 298 GVPVLTSQYGTVNGQYSLRVEHLI 321
Q G V + + ++ I
Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1515FLGMOTORFLIN2114e-74 Flagellar motor switch protein FliN signature.
		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

Length = 137

Score = 211 bits (538), Expect = 4e-74
Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60
MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI
Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60

Query: 61 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1517FLGBIOSNFLIP330e-117 Escherichia coli: Flagellar biosynthetic protein Fl...
		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP

signature.
Length = 245

Score = 330 bits (847), Expect = e-117
Identities = 225/245 (91%), Positives = 233/245 (95%)

Query: 1 MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60
MRRLL ++ LWL +P A AQLPG+ SQPL GGGQSWSL VQTLVFITSLTF+PAILLM
Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120
MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE+K
Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMRILLPAYVTSELK 180
ISMQEAL+KGAQPLR FMLRQTREADL LFARLAN+GPLQGPEAVPMRILLPAYVTSELK
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180

Query: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
Sbjct: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240

Query: 241 QSFYS 245
QSFYS
Sbjct: 241 QSFYS 245


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1518TYPE3IMQPROT671e-18 Type III secretion system inner membrane Q protein ...
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

family signature.
Length = 86

Score = 67.5 bits (165), Expect = 1e-18
Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 4 ESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFIAII 63
+ ++ G +A+ + L L+ +VA I GL++ + Q TQ+ E TL F K++ V + +
Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61

Query: 64 VAGPWMLNLLLDYVRTLF 81
+ W +LL Y R +
Sbjct: 62 LLSGWYGEVLLSYGRQVI 79


23SeKA_A1530SeKA_A1607Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1530221-1.064361metal dependent phosphohydrolase
SeKA_A1531324-1.795757outer membrane protein N
SeKA_A1532423-3.114900hypothetical protein
SeKA_A1533323-4.940273outer membrane protein N
SeKA_A1535229-5.542712protein UmuC
SeKA_A1536230-7.921247protein UmuD
SeKA_A1537128-6.305195putative cytoplasmic protein
SeKA_A1538127-5.864518hypothetical protein
SeKA_A1539120-2.668751hypothetical protein
SeKA_A1540019-4.155531hypothetical protein
SeKA_A1542017-4.744333*conserved hypothetical protein
SeKA_A1546016-4.843286**putative endoprotease
SeKA_A1547016-5.238819hypothetical protein
SeKA_A1548016-5.338766DNA-binding prophage protein
SeKA_A1550018-5.040792tetratricopeptide repeat protein
SeKA_A1551-120-2.867466putative periplasmic protein
SeKA_A1552-320-0.393629conserved hypothetical protein
SeKA_A1553-121-1.216018conserved hypothetical protein
SeKA_A1554-217-0.266178hypothetical protein
SeKA_A15550151.546726AMP nucleosidase
SeKA_A15561151.856165putative cytoplasmic protein
SeKA_A15571163.011930conserved hypothetical protein
SeKA_A15611162.990436**integrase
SeKA_A15620152.656828arsenical-resistance protein
SeKA_A1563-1152.614442arsenical pump-driving ATPase
SeKA_A1564-1161.175460arsenical resistance operon trans-acting
SeKA_A15651151.478675arsenate reductase
SeKA_A15661171.103991arsenic resistance transcriptional regulator
SeKA_A15672191.301752protein ErfK/srfK
SeKA_A15692211.463040cobalamin 5'-phosphate synthase
SeKA_A15702211.163583bifunctional adenosylcobalamin biosynthesis
SeKA_A15711191.597576cobyric acid synthase CobQ
SeKA_A15720171.425681cobalt import ATP-binding protein CbiO
SeKA_A1573-1162.753977cobalt ABC transporter, permease protein CbiQ
SeKA_A1574-1153.028879cobalt transport protein CbiN
SeKA_A1575-2143.267780cobalamin biosynthesis protein CbiM
SeKA_A1576-2123.569592precorrin-2 C20-methyltransferase
SeKA_A1577-3133.351172sirohydrochlorin cobaltochelatase
SeKA_A1578-3133.725051precorrin-6x reductase
SeKA_A1579-3123.044431precorrin-3B C17-methyltransferase
SeKA_A1580-2163.009759CbiG
SeKA_A1581-1153.712977precorrin-4 C11-methyltransferase
SeKA_A15820163.465622precorrin-8W decarboxylase
SeKA_A15830151.764092precorrin-6y C5,15-methyltransferase
SeKA_A15840150.923056cobalamin biosynthesis protein CbiD
SeKA_A1585118-0.150908cobalt-precorrin-8X methylmutase
SeKA_A1586117-0.470301cobalamin biosynthesis protein CobD
SeKA_A1587016-0.318353cobyrinic Acid a,c-diamide synthase
SeKA_A1589-2170.141744regulatory protein PocR
SeKA_A1590-2222.351061propanediol diffusion facilitator
SeKA_A15911303.321757hypothetical protein
SeKA_A15921294.817802propanediol utilization protein PduA
SeKA_A15930295.017241propanediol utilization protein PduB
SeKA_A15940284.468851propanediol utilization dehydratase, large
SeKA_A1595-1244.740217propanediol utilization: dehydratase, medium
SeKA_A15960225.092181propanediol dehydratase small subunit
SeKA_A15970215.697523glycerol dehydratase reactivation factor large
SeKA_A15983225.680643PduH protein
SeKA_A15993236.352282propanediol utilization protein PduJ
SeKA_A16003236.427664polyhedral body protein
SeKA_A16012246.825956propanediol utilization
SeKA_A16022257.406483propanediol utilization
SeKA_A16031267.122498pduN protein
SeKA_A16040276.810166PduO
SeKA_A1605-1276.560977ethanolamine utilization protein EutE
SeKA_A1606-2225.018569propanediol utilization: propanol dehydrogenase
SeKA_A1607-1174.102506respiratory-chain NADH dehydrogenase 51 Kd
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1531BCTERIALGSPC270.007 Bacterial general secretion pathway protein C signa...
		>BCTERIALGSPC#Bacterial general secretion pathway protein C

signature.
Length = 272

Score = 27.2 bits (60), Expect = 0.007
Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 9 VFYTFCGYFIWAMARCVWLMSAIQTEPVLGPISTPGSATEK 49
+FY F +A W + PV TP A ++
Sbjct: 18 LFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPAQARQQ 58


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1533ECOLIPORIN5390.0 E.coli/Salmonella-type porin signature.
		>ECOLIPORIN#E.coli/Salmonella-type porin signature.

Length = 383

Score = 539 bits (1391), Expect = 0.0
Identities = 270/404 (66%), Positives = 308/404 (76%), Gaps = 22/404 (5%)

Query: 1 MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYFSDDAGSDGDQSYARIG 60
M RKVLAL++PALL AGAA+AAE+YNK+GNKLDLYGKVDGL YFSDD+ DGDQ+Y R+G
Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG 60

Query: 61 FKGETQINDMLTGYGQWEYNMQASGTEGNRDTSWTRLGFAGLKFGEYGSFDYGRNYGVIY 120
FKGETQIND LTGYGQWEYN+QA+ TEG SWTRL FAGLKFG+YGSFDYGRNYGV+Y
Sbjct: 61 FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY 120

Query: 121 DVEAWTDVLPEFGGDSYTQTDVYMLQRANGLATYRNTDFFGLVEGWNFALQYQGNNESGN 180
DVE WTD+LPEFGGDSYT D YM RANG+ATYRNTDFFGLV+G NFALQYQG NES +
Sbjct: 121 DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNESQS 180

Query: 181 NGFGQEGSGNGTN-RGTNKENGDGFGLSTSYDFDFGLSLGAAYSNSDRTDAQVGNGYGDG 239
G+ N N +NGDGFG+ST+YD G S GAAY+ SDRT+ QV
Sbjct: 181 ADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNA----- 235

Query: 240 HRYYGNNDAGGETAEAWTVGVKYDAYDVYLAAMYSETRNMTSYGDSDYHSADGKLGGGGI 299
G AGG+ A+AWT G+KYDA ++YLA MYSETRNMT YG +D GG+
Sbjct: 236 ----GGTIAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDKG------YDGGV 285

Query: 300 ANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGQDMDSHGNYRYTDKDLVKYVDVGMT 359
ANKTQNFEV AQYQFDFGLRP++++L SKGKDL N DKDLVKY DVG T
Sbjct: 286 ANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTY------NNVNGDDKDLVKYADVGAT 339

Query: 360 YYFNKNMSTYVDYKINLLDEDDDFYTNNGIATDDIVGVGLVYQF 403
YYFNKN STYVDYKINLLD+DD FY + GI+TDDIV +G+VYQF
Sbjct: 340 YYFNKNFSTYVDYKINLLDDDDPFYKDAGISTDDIVALGMVYQF 383


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1555PF03627371e-04 PapG
		>PF03627#PapG

Length = 336

Score = 36.9 bits (85), Expect = 1e-04
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 327 DDHVLDAVLPPDIP-------IPSIAEVQRALYDATKAVSGMPGEEVKQRLRTGTVVTTD 379
DD + LP D+P IP + +QR A +P K R ++
Sbjct: 152 DDIIFKVALPADLPLGDYSVTIPYTSGMQRHFASYLGARFKIPYNVAKTLPRENEMLFLF 211

Query: 380 DRNWELRYSASALRFNLSRAVAIDMESATIAAQ 412
R SA +L ++I+ + AAQ
Sbjct: 212 KNIGGCRPSAQSLEIKHGD-LSINSANNHYAAQ 243


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1574ANTHRAXTOXNA270.017 Anthrax toxin LF subunit signature.
		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.

Length = 800

Score = 26.6 bits (58), Expect = 0.017
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 39 QAIAPQYKPWFQPLYEPASGEIESLLFTLQGS 70
+ IAP+YK +FQ L E + +++ LL T Q S
Sbjct: 739 KQIAPEYKNYFQYLKERITNQVQ-LLLTHQKS 769


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1606BONTOXILYSIN310.010 Bontoxilysin signature.
		>BONTOXILYSIN#Bontoxilysin signature.

Length = 1196

Score = 30.6 bits (69), Expect = 0.010
Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 190 SDFTDALAEKAAKLVFQYLPTAVEKGDCVATRGKMHNAS 228
SDF+ ++ K LV+ +L + + + G +
Sbjct: 518 SDFSKVVSSKDKSLVYSFLDNLMSYLETIKNDGPIDTDK 556


24SeKA_A1635SeKA_A1671Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1635-117-5.712286imidazoleglycerol phosphate synthase, cyclase
SeKA_A1636128-8.563238histidine biosynthesis bifunctional protein
SeKA_A1637235-10.204949chain length determinant protein
SeKA_A1638341-12.048284udp-glucose 6-dehydrogenase
SeKA_A1639447-13.3163836-phosphogluconate dehydrogenase,
SeKA_A1640659-16.559214undecaprenyl-phosphate galactose
SeKA_A1641759-17.068903phosphomannomutase
SeKA_A1642858-17.669129mannose-1-phosphate
SeKA_A1643860-19.033718glycosyl transferase, group 1
SeKA_A1644963-19.642535second mannosyl transferase
SeKA_A1645861-19.703176O-antigen polymerase
SeKA_A1646756-17.417517rhamnosyl transferase
SeKA_A1647653-15.898458conserved hypothetical protein
SeKA_A1648750-14.739584glycosyl transferase, group 2 family protein
SeKA_A1649749-13.639060putative membrane protein
SeKA_A1650744-11.294830CDP-abequose synthase
SeKA_A1651539-8.596707lipopolysaccharide biosynthesis protein RfbH
SeKA_A1652338-8.563044CDP-glucose 4,6-dehydratase
SeKA_A1653231-7.047913glucose-1-phosphate cytidylyltransferase
SeKA_A1655-123-5.405888dTDP-4-dehydrorhamnose 3,5-epimerase
SeKA_A1656-116-3.015722glucose-1-phosphate thymidylyltransferase
SeKA_A1657-113-1.789592dTDP-4-dehydrorhamnose reductase
SeKA_A1658-113-1.663457dTDP-glucose 4,6-dehydratase
SeKA_A1659013-0.282417regulatory protein GalF
SeKA_A16600161.357003colanic acid biosynthesis protein WcaM
SeKA_A1661-1223.004358putative colanic acid biosynthesis
SeKA_A1662-1223.153768colanic acid biosynthesis protein WcaK
SeKA_A1663-1253.894385lipopolysaccharide biosynthesis protein WzxC
SeKA_A1664-1295.524264undecaprenyl-phosphate glucose
SeKA_A1665-1336.243294phosphomannomutase
SeKA_A1666-1264.864668mannose-1-phosphate guanylyltransferase
SeKA_A16670202.700515colanic acid biosynthesis glycosyl transferase
SeKA_A1668017-0.744372GDP-mannose mannosyl hydrolase
SeKA_A1669017-0.684788GDP-L-fucose synthetase
SeKA_A1670116-1.701163GDP-mannose 4,6-dehydratase
SeKA_A1671216-2.728789transferase hexapeptide repeat containing
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1637IGASERPTASE320.005 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 31.6 bits (71), Expect = 0.005
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 138 STTAEGAQRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRI 197
+T R +A+ + + + EV + T +T+T E+ ET V +E+ +
Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT-TETKETATVEKEEKAKVET 1116

Query: 198 KQIEEALRYADEAKITQPQIQQTQ 221
++ +E + + Q Q + Q
Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQ 1140


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1645FLAGELLIN300.018 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

Length = 507

Score = 30.0 bits (67), Expect = 0.018
Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 255 DSSQASRGSTQGRIDMAINSLNFLSE 280
D+ ++S G+ Q R D AI +L
Sbjct: 432 DAVRSSLGAIQNRFDSAITNLGNTVT 457


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1650NUCEPIMERASE832e-20 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 83.3 bits (206), Expect = 2e-20
Identities = 64/327 (19%), Positives = 130/327 (39%), Gaps = 51/327 (15%)

Query: 7 KILMTGATSFVGTHLLHSLIKEGYSIIALK--RPITEPTIINTLIEWL----------NI 54
K L+TGA F+G H+ L++ G+ ++ + + ++ +E L ++
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 55 QDIEKICQ--SSMNIHAIVHIATDYGRNRTPISEQ-YK-CNVLLPTRLLELMPALKTKFF 110
D E + +S + + + + Y N+ +LE K +
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121

Query: 111 I--STDSFFGKYEK----------HYGYMRSYMASKRHFVELSKIYVEEHPDVCFINLRL 158
+ S+ S +G K H + Y A+K+ ++ Y + + LR
Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHP--VSLYAATKKANELMAHTYSHLY-GLPATGLRF 178

Query: 159 EHVYGERDKAGKIIPYIIKKMKNNEDIDC-TIARQKRDFIYIDDVVSAYLKILKEGFNA- 216
VYG + + K M + ID + KRDF YIDD+ A +++ +A
Sbjct: 179 FTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238

Query: 217 GHYDVE---------------VGTGKSIELKEVFEIIKKETHSSSKINYGAVAMRDDEIM 261
+ VE +G +EL + + ++ +K N + ++ +++
Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM--LPLQPGDVL 296

Query: 262 ESHANTSFLTQ-LGWSAEFSIEKGVKK 287
E+ A+T L + +G++ E +++ GVK
Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKN 323


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1651PERTACTIN330.003 Pertactin signature.
		>PERTACTIN#Pertactin signature.

Length = 922

Score = 32.8 bits (74), Expect = 0.003
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 209 GDIGTVSFYPAHHITMGEGGAVFTRSGELKKIIESFRDWGRDCYCAPGCDNTCGKRFGQQ 268
G +G S + E A+ R GEL+ ++ WGR DN G+RF Q+
Sbjct: 629 GGVGLAS-----TLWYAESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQK 683

Query: 269 LGSLPQGYDHKYTYS----HLG 286
+ G DH + HLG
Sbjct: 684 VAGFELGADHAVAVAGGRWHLG 705


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1652NUCEPIMERASE702e-15 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 69.8 bits (171), Expect = 2e-15
Identities = 62/352 (17%), Positives = 123/352 (34%), Gaps = 48/352 (13%)

Query: 11 RVFVTGHTGFKGSWLSLWLTEMGAIVKGY-ALDAPTVPSLFEIVHL---NDLMESHIGDI 66
+ VTG GF G +S L E G V G L+ SL + + H D+
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 67 RDFEKLRNSIAEFKPEIVFHMAAQPLVRLSYEQPIETYSTNVMGTVHLLEAVKQVGNIKA 126
D E + + A E VF + VR S E P +N+ G +++LE + I+
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN-KIQH 120

Query: 127 VVNITSDKCYDNREWVWGYRENEPMGGYD-------PYSNSKGCAELVASAFRNSFFNPA 179
++ +S V+G P D Y+ +K EL+A + + +
Sbjct: 121 LLYASSSS-------VYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY---- 169

Query: 180 NYEQHGVGLASVRAGNVIGGGDWAK-DRLIPDILRSFENNQQVIIRNPYSI-RPWQHVLE 237
G+ +R V G W + D + ++ + + + N + R + ++ +
Sbjct: 170 -----GLPATGLRFFTVY--GPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDD 222

Query: 238 PLSGYIVVAQRLYTEGAKFSEG-------------WNFGPRDEDAKTVEFIVDKMVTLWG 284
I + + +++ +N G + + + + G
Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIG--NSSPVELMDYIQALEDALG 280

Query: 285 DDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLGRIVKWHKAW 336
+A + P + D +G+ P + + + V W++ +
Sbjct: 281 IEAKKNML-PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1657NUCEPIMERASE422e-06 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 41.7 bits (98), Expect = 2e-06
Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDV-----------HSKEFC---------GD 39
M L+ G G +G+ + + L G+ ++ +D E D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

Query: 40 FSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPEL---AQLLNATSVEAIAKAANETG 96
++ +G+ + + + + AV + P + L ++ +
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120

Query: 97 AWVVHYSTDYVFPGTGDIPWQETDATS-PLNVYGKTKLAGEK 137
+++ S+ V+ +P+ D+ P+++Y TK A E
Sbjct: 121 --LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL 160


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1658NUCEPIMERASE1762e-54 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 176 bits (447), Expect = 2e-54
Identities = 83/359 (23%), Positives = 141/359 (39%), Gaps = 50/359 (13%)

Query: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLE--SLSDISESNRYNFEH 56
MK L+TG AGFIG V + +++ VV ID L Y +L+ L +++ + F
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPG-FQFHK 58

Query: 57 ADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEVARKYWS 116
D+ D +T +F + V V S+ P A+ ++N+ G +LE R
Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN-- 116

Query: 117 ALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVMLPLFTETTAYAPSSPYSASKASSDH 176
+ S+ VYG +P T+ + P S Y+A+K +++
Sbjct: 117 -------KIQHLLYASSSSVYGLNRK---------MPFSTDDSVDHPVSLYAATKKANEL 160

Query: 177 LVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236
+ + YGLP YGP+ P+ + LEGK + +Y G RD+ Y+
Sbjct: 161 MAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYI 220

Query: 237 EDHA----RALHMVVTEGKA--------------GETYNIGGHNEKNNLDVVFTICDLLD 278
+D A R ++ YNIG + +D + + D L
Sbjct: 221 DDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG 280

Query: 279 EIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337
+A + + +PG + D + +G+ P T + G++ V WY
Sbjct: 281 ---IEA-----KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1669NUCEPIMERASE886e-22 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 87.9 bits (218), Expect = 6e-22
Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 47/344 (13%)

Query: 5 RIFVAGHRGMVGSAIVRQLAQRG-------------DVEL------VLRTRD----ELDL 41
+ V G G +G + ++L + G DV L +L ++DL
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 42 LDGRAVQAFFAGAGIDQVYLAAAKVGGIVANNTYPADFIYENMMIESNIIHAAHLHNVNK 101
D + FA ++V+++ + + + P + N+ NI+ + +
Sbjct: 62 ADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120

Query: 102 LLFLGSSCIYPKLARQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 161
LL+ SS +Y + P + P + YA K A + +Y+ YG +
Sbjct: 121 LLYASSSSVYGLNRKMPFSTD---DSVDHPVS-LYAATKKANELMAHTYSHLYGLPATGL 176

Query: 162 MPTNLYGPHDNFHPDNSHVIPALLRRFHEAAQSHAPEVVVWGSGTPMREFLHVDDMAAAS 221
+YGP PD AL + + + +V + G R+F ++DD+A A
Sbjct: 177 RFFTVYGPWGR--PDM-----ALFKFTKAMLEGKSIDV--YNYGKMKRDFTYIDDIAEAI 227

Query: 222 IHVMELA----REVWQENTDPMLSH-----INVGTGVDCTIRELAQTIAKVVGYQGRVVF 272
I + ++ + E P S N+G + + Q + +G + +
Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287

Query: 273 DAAKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLAGTYQWFLEN 315
+P D L++ +G+ E +++ G+ W+ +
Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1670NUCEPIMERASE1063e-28 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 106 bits (266), Expect = 3e-28
Identities = 80/361 (22%), Positives = 126/361 (34%), Gaps = 58/361 (16%)

Query: 6 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH--------SCNPK 57
L+TG G G ++++ LLE G++V GI + N Y D P
Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLND------YYDVSLKQARLELLAQPG 53

Query: 58 FHLHYGDLTDASNLTRILQEVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAI 117
F H DL D +T + + V+ V S E+P AD + G L +LE
Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113

Query: 118 RFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKLYAYWITVNYRESYD 176
R ++ AS+S +YGL +++P +P S YA K + Y Y
Sbjct: 114 RHNKIQ---HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170

Query: 177 IYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVRM 236
+ A F P K T+A+ G +Y RD+ + D
Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLE---GKSIDVY-NYGKMKRDFTYIDD---- 222

Query: 237 QWMMLQQEQPEDFVIATGVQYSVRQFVELAAAQLGIKLRFEGEGINEKGIVVSVTGHDAP 296
IA + +R + A + + V G+ +P
Sbjct: 223 --------------IAEAI---IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSP 265

Query: 297 GVKPGDVIVAV--------DPRY--FRPAEVETLLGDPSKAHEKLGWKPEITLSEMVSEM 346
V+ D I A+ +P +V D +E +G+ PE T+ + V
Sbjct: 266 -VELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNF 324

Query: 347 V 347
V
Sbjct: 325 V 325


25SeKA_A1685SeKA_A1734Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1685-1143.653869conserved hypothetical protein
SeKA_A1686-1154.206745PAS domain protein
SeKA_A1687-1165.062548dna-3-methyladenine glycosylase 2
SeKA_A1688-1154.331056conserved hypothetical protein
SeKA_A1690-1143.990414hypothetical protein
SeKA_A1691-2143.755695multidrug resistance protein MdtA
SeKA_A1692-1132.752922multidrug resistance protein MdtB
SeKA_A1693-1131.957580multidrug resistance protein MdtC
SeKA_A1694-2110.806184inner membrane transport protein YieO
SeKA_A1695-1130.733938signal transduction histidine-protein kinase
SeKA_A1696014-1.855301response regulator
SeKA_A1697014-2.304394putative cytoplasmic protein
SeKA_A1698015-2.244921putative inner membrane protein
SeKA_A1699-115-4.305860conserved hypothetical protein
SeKA_A1700134-11.887749conserved hypothetical protein
SeKA_A1701850-18.295261conserved hypothetical protein
SeKA_A1702952-20.122072IS1-family insertion element protein
SeKA_A1703746-16.662397hypothetical protein
SeKA_A1704748-17.762928conserved hypothetical protein
SeKA_A1705946-16.744337hypothetical protein
SeKA_A1706846-16.298083conserved hypothetical protein
SeKA_A1707943-16.880693protein YibA
SeKA_A17081139-12.640961protein RhsD
SeKA_A17091747-19.537388hypothetical protein
SeKA_A1710941-12.970370hypothetical protein
SeKA_A1712121-6.021672hypothetical protein
SeKA_A1713223-6.602367conserved hypothetical protein
SeKA_A1714018-4.461898hypothetical protein
SeKA_A1715-118-3.857897hypothetical protein
SeKA_A1716-215-1.703961conserved hypothetical protein
SeKA_A1717-217-1.336906peptidase, U32 family
SeKA_A1719-115-0.631692Tir chaperone
SeKA_A17200152.305459hypothetical protein
SeKA_A17210142.107883conserved hypothetical protein
SeKA_A17220143.011685conserved hypothetical protein
SeKA_A17240143.966626nucleoside transporter
SeKA_A17251175.303732ADP-ribosylglycohydrolase family protein
SeKA_A17262184.436105kinase, PfkB family
SeKA_A1727221-0.628016transcriptional regulator, GntR family
SeKA_A1728224-3.610154phosphomethylpyrimidine kinase
SeKA_A1729229-6.364011hydroxyethylthiazole kinase
SeKA_A1731235-9.046297hypothetical protein
SeKA_A1732335-9.016564conserved hypothetical protein
SeKA_A1733128-7.010614putative outer membrane lipoprotein
SeKA_A1734-113-3.929172fimbrial usher protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1688SHAPEPROTEIN514e-09 Bacterial cell shape determinant MreB/Mbl protein s...
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

signature.
Length = 347

Score = 50.9 bits (122), Expect = 4e-09
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 20/129 (15%)

Query: 132 AMMVHIRHTAHSQ-LPESITQAVIGRPINFQGLGGDDANRQAQGILERAAKRAGFQEVVF 190
M+ H HS + ++ P+ R+A + +A+ AG +EV
Sbjct: 89 KMLQHFIKQVHSNSFMRPSPRVLVCVPVGA-----TQVERRA---IRESAQGAGAREVFL 140

Query: 191 QYEPVAAGLDYEATLREEKRVLVVDIGGGTTDCSMLLMGPQWRQRADRENSLLGHSGCRV 250
EP+AA + + E +VVDIGGGTT+ +++ + ++ S R+
Sbjct: 141 IEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN-----------GVVYSSSVRI 189

Query: 251 GGNDLDIAL 259
GG+ D A+
Sbjct: 190 GGDRFDEAI 198



Score = 35.1 bits (81), Expect = 5e-04
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 377 ALDQPLTRILEQVQLALDSAQEKPDV--------IYLTGGSARSPLIKKALSEQLPGIPV 428
AL +PLT I+ V +AL+ Q P++ + LTGG A + + L E+ GIPV
Sbjct: 259 ALQEPLTGIVSAVMVALE--QCPPELASDISERGMVLTGGGALLRNLDRLLMEET-GIPV 315

Query: 429 AGGDD-FGSVTAGLARWAEVV 448
+D V G + E++
Sbjct: 316 VVAEDPLTCVARGGGKALEMI 336


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1691RTXTOXIND423e-06 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 42.1 bits (99), Expect = 3e-06
Identities = 49/369 (13%), Positives = 105/369 (28%), Gaps = 88/369 (23%)

Query: 4 SNTFRWAIAIGVVVAAAAF-WFWHSRSESPTAAPGV--------AAQAPHTAAADRRGMR 54
S R + AF + E A G + + ++
Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113

Query: 55 DG-------PLA---PVQAATATTQAVPRYLSGLGTVTAANTVTVRSRVDG--QLIALHF 102
+G L + A T + L T ++ ++ +L
Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173

Query: 103 QEGQQVNAGDLLAQI------------DPSQFKVALAQAQGQLAKDNATLANARR----- 145
Q V+ ++L Q ++ L + + + A +
Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233

Query: 146 --DLARYQQLAKTNLVSRQELDAQQALVNETQGTIKADEANVA----------------- 186
L + L +++ + Q+ E ++ ++ +
Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293

Query: 187 --------------------------SAQLQLDWSRITAPVSGRV-GLKQVDVGNQISSS 219
+ + S I APVS +V LK G ++++
Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353

Query: 220 DTAGIVVITQTHPIDLIFTLPESDIATVVQAQKAGKALVVEAWDRTNSHKL-SEGVLLSL 278
+T +V++ + +++ + DI + Q A + VEA+ T L + ++L
Sbjct: 354 ETL-MVIVPEDDTLEVTALVQNKDIGFINVGQNA--IIKVEAFPYTRYGYLVGKVKNINL 410

Query: 279 DNQIDPTTG 287
D D G
Sbjct: 411 DAIEDQRLG 419


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1692ACRIFLAVINRP8910.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 891 bits (2303), Expect = 0.0
Identities = 293/1036 (28%), Positives = 504/1036 (48%), Gaps = 29/1036 (2%)

Query: 13 SRLFILRPVATTLLMAAILLAGIIGYRFLPVAALPEVDYPTIQVVTLYPGASPDVMTSAV 72
+ FI RP+ +L +++AG + LPVA P + P + V YPGA + V
Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61

Query: 73 TAPLERQFGQMSGLKQMSSQS-SGGASVVTLQFQLTLPLDVAEQEVQAAINAATNLLPSD 131
T +E+ + L MSS S S G+ +TL FQ D+A+ +VQ + AT LLP +
Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121

Query: 132 LPNPPIYSKVNPADPPIMTLAVTSNAMPMTQVE--DMVETRVAQKISQVSGVGLVTLAGG 189
+ I S + +M S+ TQ + D V + V +S+++GVG V L G
Sbjct: 122 VQQQGI-SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 190 QRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGP------ERAVTLSANDQ 243
Q A+R+ L+A + LT V + N A G L G + ++ A +
Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239

Query: 244 MQSADEYRKLII-AYQNGAPVRLGDVATVEQGAENSWLGAWANQAPAIVMNVQRQPGANI 302
++ +E+ K+ + +G+ VRL DVA VE G EN + A N PA + ++ GAN
Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299

Query: 303 IATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDTQFELMLAIALVVMIIYLFL 362
+ TA +I+ L +L P+ +KV D T ++ S+ + L AI LV +++YLFL
Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359

Query: 363 RNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRY 422
+N+ AT+IP +AVP+ L+GTFA++ +SIN LT+ + +A G +VDDAIVV+EN+ R
Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 423 I-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAIL 481
+ E P A K +I ++ + L AV IP+ F G G ++R+F++T+ A+
Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479

Query: 482 ISAVVSLTLTPMMCARML---SQQSLRKQNRFSRACERMFDRVIASYGRGLAKVLNHPWL 538
+S +V+L LTP +CA +L S + + F FD + Y + K+L
Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539

Query: 539 TLSVAFATLLLSVMLWIVIPKGFFPVQDNGIIQGTLQAPQSSSYASMAQRQRQVAERILQ 598
L + + V+L++ +P F P +D G+ +Q P ++ + QV + L+
Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599

Query: 599 DPA--VQSLTTFVGVDGANPTLNSARLQINLKPLDARDDR---VQQVISRLQTAVATIPG 653
+ V+S+ T G + N+ ++LKP + R+ + VI R + + I
Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659

Query: 654 VALYLQPTQDLTIDTQVSRTQYQFTLQ---ATTLDALSHWVPKL-QNALQSLPQLSEVSS 709
++ P I + T + F L DAL+ +L A Q L V
Sbjct: 660 G--FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717

Query: 710 DWQDRGLAAWVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTA 769
+ + + VD++ A LG+S++D++ + A G ++ + ++ ++ +
Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777

Query: 770 STPGLAALETIRLTSRDGGTVPLSAIARIEQRFAPLSINHLDQFPVTTFSFNVPEGYSLG 829
++ + + S +G VP SA + + + P G S G
Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837

Query: 830 DAVQAILDTEKTLALPADITTQFQGSTLAFQAALGSTVWLIVAAVVAMYIVLGVLYESFI 889
DA+ + + LPA I + G + + + L+ + V +++ L LYES+
Sbjct: 838 DAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895

Query: 890 HPITILSTLPTAGVGALLALIIAGSELDIIAIIGIILLIGIVKKNAIMMIDFALAAEREQ 949
P++++ +P VG LLA + + D+ ++G++ IG+ KNAI++++FA ++
Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955

Query: 950 GMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIAMVGGLLVSQV 1009
G +A A +R RPILMT+LA +LG LPL +S G G+ + +GI ++GG++ + +
Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015

Query: 1010 LTLFTTPVIYLLFDRL 1025
L +F PV +++ R
Sbjct: 1016 LAIFFVPVFFVVIRRC 1031


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1693ACRIFLAVINRP8790.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 879 bits (2273), Expect = 0.0
Identities = 283/1035 (27%), Positives = 504/1035 (48%), Gaps = 36/1035 (3%)

Query: 6 LFIYRPVATILIAAAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVAT 65
FI RP+ ++A + + G L LPVA P + P + VSA+ PGA +T+ +V
Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63

Query: 66 PLERSLGRIAGVNEMTSSS-SLGSTRIILEFNFDRDINGAARDVQAAINAAQSLLPGGMP 124
+E+++ I + M+S+S S GS I L F D + A VQ + A LLP +
Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123

Query: 125 SRPTYRKANPSDAPIMILTLTSES--WSQGKLYDFASTQLAQTIAQIDGVGDVDVGGSSL 182
+ S + +M+ S++ +Q + D+ ++ + T+++++GVGDV + G+
Sbjct: 124 -QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182

Query: 183 PAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSV------HRWQIQTNDELK 236
A+R+ L+ L ++ +V + N + G + + I K
Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241

Query: 237 TAAEYQPLIIHYN-NGAAVRLGDVASVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQ 295
E+ + + N +G+ VRL DVA V ++ N KPA L I+ AN +
Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301

Query: 296 TVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEVEETLAISVALVILVVFLFLRS 355
T I+AKL EL+ P + + D +P ++ S+ EV +TL ++ LV LV++LFL++
Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361

Query: 356 GRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHL- 414
RATLIP +AVPV L+GTFA + G+S+N L++ + +A G +VDDAIVV+EN+ R +
Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421

Query: 415 EAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGIS 474
E + P +A + ++ ++ +++ L AVF+P+ GG G + R+F++T+ A+ +S
Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481

Query: 475 LVVSLTLTPMMCGWMLKSSKPRTQPRKRGVG----RLLVALQQGYGTSLKWVLNHTRLVG 530
++V+L LTP +C +LK K G Y S+ +L T
Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541

Query: 531 VVFLGTIALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQ----AMRGKLQDFMKII 586
+++ +A + L++ +P +F PE+D GV + IQ + + + ++K
Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601

Query: 587 RD-DPAVNNVTGFT-GGSRVNSGMMFITLKPRGER---KETAQQVIDRLRVKLAKEPGAR 641
+ +V V GF+ G N+GM F++LKP ER + +A+ VI R +++L K
Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661

Query: 642 LFLMAVQDIRVGGRQANASYQYTLLSDSLAALREWEPKIRKALSAL-----PQLADVNSD 696
+ + I G ++ L D + + R L + L V +
Sbjct: 662 VIPFNMPAIVELGTATGFDFE---LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718

Query: 697 QQDNGAEMNLIYDRDTMSRLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRY 756
++ A+ L D++ LG+ + N ++ A G ++ K+ ++ D ++
Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778

Query: 757 SQDISALEKMFVINSDGKAIPLSYFAQWRPANAPLSVNHQGLSAASTIAFNLPTGTSLSQ 816
++K++V +++G+ +P S F + + I GTS
Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838

Query: 817 ATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVH 876
A + ++L P + ++G + + + N L+ + V++ L LYES+
Sbjct: 839 AMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896

Query: 877 PLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGG 936
P++++ +P VG LLA LFN + ++G++ IG+ KNAI++V+FA + G
Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956

Query: 937 LTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLL 996
+A A +R RPI+MT+LA + G LPL +S G GS + +GI ++GG+V + LL
Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016

Query: 997 TLYTTPVVYLFFDRL 1011
++ PV ++ R
Sbjct: 1017 AIFFVPVFFVVIRRC 1031


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1694TCRTETB1243e-33 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 124 bits (312), Expect = 3e-33
Identities = 95/450 (21%), Positives = 198/450 (44%), Gaps = 25/450 (5%)

Query: 20 FMQSLDTTIVNTALPSMAKSLGESPLHMHMVVVSYVLTVAVMLPASGWLADKIGVRNIFF 79
F L+ ++N +LP +A + P + V +++LT ++ G L+D++G++ +
Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

Query: 80 AAIVLFTLGSLFCALSGT-LNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTF 138
I++ GS+ + + + L++AR +QG G A + + V + +P+ A
Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143

Query: 139 VTLPGQIGPLLGPALGGVLVEYASWHWIFLINIP-VGIVGAMATFMLMPNYTIETRRFDL 197
+ +G +GPA+GG++ Y HW +L+ IP + I+ L+ FD+
Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201

Query: 198 PGFLLLAIGMAVLTLALDGSKSMGISPWTLAGLAAGGAAAILLYLFHAKKNSGALFSLRL 257
G +L+++G+ L + L + L+++ H +K + L
Sbjct: 202 KGIILMSVGIVFFMLFTTSYSISFLIVSVL---------SFLIFVKHIRKVTDPFVDPGL 252

Query: 258 FRTPTFSLGLLGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRI 316
+ F +G+L M P ++ S G +++ P + + I
Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312

Query: 317 VVQIVNRFGYRRVLVATTLGLALVSLLFMSVALL----GWYYLLPLVLLLQGMVNSARFS 372
+V+R G VL +G+ +S+ F++ + L W+ + +V +L G+ S +
Sbjct: 313 GGILVDRRGPLYVL---NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL--SFTKT 367

Query: 373 SMNTLTLKDLPDTLASSGNSLLSMIMQLSMSIGVTIAGMLL--GMFGQQHIGIDSSATHH 430
++T+ L A +G SLL+ LS G+ I G LL + Q+ + ++ + +
Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTY 427

Query: 431 VFMYTWLCMAVIIALPAIIFARVPNDTQQN 460
++ L + II + ++ V +Q++
Sbjct: 428 LYSNLLLLFSGIIVISWLVTLNVYKHSQRD 457


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1695BCTERIALGSPF310.010 Bacterial general secretion pathway protein F signa...
		>BCTERIALGSPF#Bacterial general secretion pathway protein F

signature.
Length = 408

Score = 31.0 bits (70), Expect = 0.010
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 14/66 (21%)

Query: 187 RGLLAPVKRLVEGTHRLAAGDFTTRVTPTSADEL-----------GKLAQDFNQLASTLE 235
L+A V+ V H LA + P S + L G L N+LA E
Sbjct: 104 SQLMAAVRSKVMEGHSLAD---AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTE 160

Query: 236 KNQQMR 241
+ QQMR
Sbjct: 161 QRQQMR 166


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1696HTHFIS758e-18 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 75.3 bits (185), Expect = 8e-18
Identities = 27/140 (19%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGL 70
IL+ +D+ + +L L A Y + ++ + ++ DL++ D+++P +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 71 TLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL-RRC 128
L I+ D+P+++++A+ + + E GA DY+ KP+ E++ + L
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 129 KPQRELQQQDAESPLMIDES 148
+ +L+ + ++ S
Sbjct: 124 RRPSKLEDDSQDGMPLVGRS 143


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1719PF05932539e-13 Tir chaperone protein (CesT)
		>PF05932#Tir chaperone protein (CesT)

Length = 127

Score = 53.3 bits (128), Expect = 9e-13
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 1 MIYGFCGRPPDNNNLAFEFLNANLWFAENNGPHLCYDNNSQSLLLALNFSLNEGSVEKLE 60
++ G P + L L N GP L D S + + SV L+
Sbjct: 52 LLIGLLE--PHKDIPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLK 109

Query: 61 CEIEVVIRSMENL 73
E+ ++ M
Sbjct: 110 REMAGLLEWMRGW 122


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1724TCRTETA371e-04 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 37.1 bits (86), Expect = 1e-04
Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 20/153 (13%)

Query: 253 FSEIFFMLALPFFTKRFGIKKVLLLGLITAAIRYGFFVYGGAETYFTYALLFLGILLHGV 312
+ L + RFG + VLL+ L AA+ Y +L++G ++ G+
Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-----FLWVLYIGRIVAGI 108

Query: 313 SYDFYYVTAYIYVDKKAPVHMRTAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYPQPVN 372
+ V D R G ++ C GFG + G LGG+M P
Sbjct: 109 TGATGAVAGAYIADI-TDGDERARHFGFMS-ACFGFGMVAGPVLGGLMGGFSPHAP---- 162

Query: 373 GLTFNWAGMWTFGAVMIAVIALLFMIFFRESDK 405
+ A + + L ES K
Sbjct: 163 ---------FFAAAALNGLNFLTGCFLLPESHK 186



Score = 33.3 bits (76), Expect = 0.002
Identities = 55/286 (19%), Positives = 93/286 (32%), Gaps = 17/286 (5%)

Query: 29 LNKSGFSAGEIGWSYACTAIAAILSPILVGSVTDRFFSAQKVLAVLMFAGAVLMYFAAQQ 88
L S G A A+ ++G+++DRF ++ + ++ AGA + Y
Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF--GRRPVLLVSLAGAAVDYAI--- 89

Query: 89 TTFAGFFPLLLAYSLTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIG-WIASGLACGF 147
A F +L + T A T ++A A + D+ R R G + G+ G
Sbjct: 90 MATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG- 147

Query: 148 LPQMLGY-NDISPTNIPLLITAASSALLGVFAFCLPDTPPKSTGKMDIKVMLGLDALVLL 206
P + G SP + P AA + L + L K + + L A
Sbjct: 148 -PVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRW 205

Query: 207 RDKN------FLVFFFCSFLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFML 260
VFF + +P A + IF G + +
Sbjct: 206 ARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAM 265

Query: 261 ALPFFTKRFGIKKVLLLGLITAAIRYGFFVYGGAETYFTYALLFLG 306
R G ++ L+LG+I Y + ++ L
Sbjct: 266 ITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA 311


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1732TYPE3OMGPROT270.019 Type III secretion system outer membrane G protein ...
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

family signature.
Length = 607

Score = 26.8 bits (59), Expect = 0.019
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 7/43 (16%)

Query: 3 SKLLPCALLLATSFAWAAPA-------TTGIDQYELKSFIADF 38
++L LLL +S++WA L+ + DF
Sbjct: 10 KRVLTGTLLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDF 52


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1734PF005776780.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 678 bits (1751), Expect = 0.0
Identities = 246/839 (29%), Positives = 387/839 (46%), Gaps = 26/839 (3%)

Query: 2 LRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITNFHLDENKPIPGQYELDI 61
L + V + A F+ F+ + + + + PG Y +DI
Sbjct: 23 LAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDI 82

Query: 62 YVNNQWRGKYDIIVADDPGST----CISTELLKNIGVISDGLQPQ---GATDCIALKDVV 114
Y+NN + D+ C++ L ++G+ + + C+ L ++
Sbjct: 83 YLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMI 142

Query: 115 RSGGYTFNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTSYYASQYYSDYKNSG 174
++G RL+L++PQA+++ GY+ PE WD GINA +Y S + G
Sbjct: 143 HDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGG 202

Query: 175 SSESTYARFNSGFNLLGWQAHADTTFNKTD-----GSSGEWKSNTLYLERGIAELLGTLR 229
+S Y SG N+ W+ +TT++ GS +W+ +LER I L L
Sbjct: 203 NSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLT 262

Query: 230 AGDQYTSSEIFDSVRFTGVRLFRDMQMLPNSRQNFTPLVQGIAQTNALVTIEQNGFVVYQ 289
GD YT +IFD + F G +L D MLP+S++ F P++ GIA+ A VTI+QNG+ +Y
Sbjct: 263 LGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYN 322

Query: 290 KEVPPGPFSIADLQLAGGGADLDVTVREADGSINTWLVPYASVPNMLQPGVSKYDFSAGR 349
VPPGPF+I D+ AG DL VT++EADGS + VPY+SVP + + G ++Y +AG
Sbjct: 323 STVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGE 382

Query: 350 SHIEGADNQAD-FTQISYQYGLNNLLTLYGGTMLSNHYNAFTLGTGWNT-RIGAISLDAT 407
A + F Q + +GL T+YGGT L++ Y AF G G N +GA+S+D T
Sbjct: 383 YRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMT 442

Query: 408 RSHSKQDNGDVFDGQSYQIAYNKYLTQTLTRFGLAAYRYSSQDYRTFNDHVWANNKNNYR 467
+++S + DGQS + YNK L ++ T L YRYS+ Y F D ++
Sbjct: 443 QANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNI 502

Query: 468 RDKNDVYDI----ADYYQNDFGRKNTFSANVGQSLPEGWGAVSLSALWRDYWGRSGTSKD 523
++ V + DYY + ++ V Q L + LS + YWG S +
Sbjct: 503 ETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQTYWGTSNVDEQ 561

Query: 524 YQISYSNTFQKINYTLSASQTYDE-DHNEDKRFNLFISIPFD--WGDGITTPRRHLNVSN 580
+Q + F+ IN+TLS S T + D+ L ++IPF + RH + S
Sbjct: 562 FQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASY 621

Query: 581 STTFDDDGFTSNNIGLTGTAGSRDQFNYGVNVSH---QRQDSETTAGTNLTWNTPVATLN 637
S + D +G +N G+ GT + +Y V + +S +T L + N
Sbjct: 622 SMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNAN 681

Query: 638 GSYSQSSNYTQTGGSISGGVVAWSGGLNLSSRLSDTFAIMQAPGLEGAYVNGQKYRTTNK 697
YS S + Q +SGGV+A + G+ L L+DT +++APG + A V Q T+
Sbjct: 682 IGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDW 741

Query: 698 KGTVVYDNLTPYRENHLMLDVSQSSSETELRGNRKVAAPYRGAVVLVNFDTDQRKPWFIK 757
+G V T YREN + LD + + +L P RGA+V F +
Sbjct: 742 RGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMT 801

Query: 758 AQRPDGSPLIFGYDVVDHHGHNVGIVGQGSQLFIRTNDIPPEVSVPVDKEQGLSCSITF 816
+ PL FG V + GIV Q+++ + +V V +E+ C +
Sbjct: 802 L-THNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANY 859


26SeKA_A1744SeKA_A1771Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1744-2163.037208sensor histidine kinase
SeKA_A1745-3143.103632transcriptional regulator, MerR family protein
SeKA_A1746-2122.771160inner membrane ABC transporter permease protein
SeKA_A1747-2112.190458glycine betaine/carnitine/choline transport
SeKA_A1748-2131.867828inner membrane ABC transporter permease protein
SeKA_A1749-1131.361200amine ABC transporter, periplasmic amine-binding
SeKA_A17500131.313089periplasmic beta-glucosidase
SeKA_A17510142.215296D-lactate dehydrogenase
SeKA_A17522151.825709D-alanyl-D-alanine endopeptidase
SeKA_A17531182.401424inner membrane protein YohC
SeKA_A17542193.254569inner membrane protein YohD
SeKA_A17552193.074915oxidoreductase, short chain
SeKA_A17560183.047856efflux transporter, outer membrane factor
SeKA_A17570172.658516conserved hypothetical protein
SeKA_A1759-1144.011357tRNA-dihydrouridine synthase C
SeKA_A1760-1143.3323403-hydroxybenzoate-6-hydroxylase
SeKA_A1761-1132.644294maleylacetoacetate isomerase
SeKA_A17620142.681499FAA-hydrolase-family protein
SeKA_A17631162.405553gentisate 1,2-dioxygenase
SeKA_A17642171.3358104-hydroxybenzoate transporter
SeKA_A1766420-1.716901membrane protein YohJ
SeKA_A1767521-1.596515conserved hypothetical protein
SeKA_A1768418-2.335335cytidine deaminase
SeKA_A1769316-3.125659vancomycin sensitivity
SeKA_A1770317-4.528525putative inner membrane protein
SeKA_A1771215-3.773180hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1744PF065802191e-68 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 219 bits (559), Expect = 1e-68
Identities = 60/216 (27%), Positives = 116/216 (53%), Gaps = 3/216 (1%)

Query: 343 LGEGIAQLLSAQILAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQA 402
L G + + + ++ ++++ L AQ+NPHF+FNALN I+A+I D +A
Sbjct: 134 LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKA 193

Query: 403 SQLVQYLSTFFRKNLKR-PSEIVTLADEIEHVNAYLQIEKARFQSRLQVQLDVPSTLSRQ 461
+++ LS R +L+ + V+LADE+ V++YLQ+ +F+ RLQ + + +
Sbjct: 194 REMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDV 253

Query: 462 KLPAFTLQPIVENAIKHGTSQLLDTGNVAIRARREGQHLMLDIEDNAGLYQPSAG-SSGL 520
++P +Q +VEN IKHG +QL G + ++ ++ + L++E+ L + S+G
Sbjct: 254 QVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGT 313

Query: 521 GMSLVDKRLREHFGDDYGISVACEPDCFTRITLRLP 556
G+ V +RL+ +G + I ++ + + +P
Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1752BLACTAMASEA345e-04 Beta-lactamase class A signature.
		>BLACTAMASEA#Beta-lactamase class A signature.

Length = 286

Score = 34.4 bits (79), Expect = 5e-04
Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 6/177 (3%)

Query: 1 MLAVPFAPQAVAKTAATTAASQPEIASGSAMI-VDLNTNKVIYSNHPDLVRPIASITKLM 59
+ +P A A + S+ +++ MI +DL + + + + D P+ S K++
Sbjct: 12 LATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVV 71

Query: 60 TAMVVLDARLPLDEILKVDISQTPEMKGVYSRV---RLNSEISRKNMLLLALMSSENRAA 116
VL DE L+ I + YS V L ++ + A+ S+N AA
Sbjct: 72 LCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAA 131

Query: 117 ASLAHYY--PGGYNAFIKAMNAKAKALGMTHTRFVEPTGLSIHNVSTARDLTKLLIA 171
L P G AF++ + L T E + +T + L
Sbjct: 132 NLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRK 188


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1754BCTERIALGSPF280.028 Bacterial general secretion pathway protein F signa...
		>BCTERIALGSPF#Bacterial general secretion pathway protein F

signature.
Length = 408

Score = 27.9 bits (62), Expect = 0.028
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 152 WLHDLDQHLRH-GVWLILAIVLVVGVRWWLKRRGKAEAR 189
L + +R G W++LA++ + R+ K
Sbjct: 215 VLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQEKRRVS 253


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1755DHBDHDRGNASE1131e-32 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 113 bits (285), Expect = 1e-32
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 12/253 (4%)

Query: 10 KVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETAKKAAQFGVRAETIHLDLS 69
K+A +T + GIG+A A LA G I ++ E+ + + A+ AE D+
Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVR 67

Query: 70 QLPEGAQAIEHLIQRLGRVDVLVNNAGAMTKSAFIDMPFTQWRQIFTVDVDGAFLCAQIA 129
+ + + +G +D+LVN AG + + +W F+V+ G F ++
Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127

Query: 130 ARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHALGGLTKSMALELIEHHILVNAVA 189
+++M+ + G I+ + S P +AY ++K A TK + LEL E++I N V+
Sbjct: 128 SKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186

Query: 190 PGAIATPM-------NDMDDSDIEPGSEP---SIPIARPGSTHEIASLVAWLCSEGASYT 239
PG+ T M + + I+ E IP+ + +IA V +L S A +
Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246

Query: 240 TGQSLIVDGGFML 252
T +L VDGG L
Sbjct: 247 TMHNLCVDGGATL 259


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1764TCRTETB514e-09 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 51.4 bits (123), Expect = 4e-09
Identities = 66/402 (16%), Positives = 142/402 (35%), Gaps = 19/402 (4%)

Query: 22 RVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLSASELAPLFGAGLLGLTAGALLCGPLA 81
+++I ++ + + PDI + + + A +L + G + G L+
Sbjct: 14 QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73

Query: 82 DRFGRKRVIELCVALFGALSLLSAFS-PDIETLVLLRFLTGLGLGGAMPNTIT-MTSEYL 139
D+ G KR++ + + S++ L++ RF+ G G A P + + + Y+
Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVVARYI 132

Query: 140 PARRRGALVTLMFCGFTLGSAMGGIVSAQLVPLIGWHGILALGGILPLMLFFGLLFALPE 199
P RG L+ +G +G + + I W +L + I + + F L+ L +
Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPF-LMKLLKK 191

Query: 200 SPRWQVRRQLPQAV---------VARTVSAITGERYHDTQFFLHETAAIAKGSI----RQ 246
R + + + + T S FL I K +
Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251

Query: 247 LFAGRQLVITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQQASWVTAAFQVGGTLGA 306
L +I ++ + F ++ + +M ++ + + G
Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG- 310

Query: 307 LLLGVLMDRLNPFRVLAVSYALGAVCIVMIGLSENG-LWLMALAIFGTGIGISGSQVGLN 365
+ G+L+DR P VL + +V + W M + I G+S ++ ++
Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370

Query: 366 ALTATLYPTQSRATGVSWSNAIGRCGAIVGSLSGGMMMALNF 407
+ ++ Q G+S N G G ++++
Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPL 412



Score = 41.8 bits (98), Expect = 4e-06
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 1/169 (0%)

Query: 251 RQLVITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQQASWVTAAFQVGGTLGALLLG 310
R I + L ++ F S+L +L+ +P + N +WV AF + ++G + G
Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70

Query: 311 VLMDRLNPFRVLAVSYALGAVCIVMIGLSENGLWLMALAIFGTGIGISGSQVGLNALTAT 370
L D+L R+L + V+ + + L+ +A F G G + + + A
Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130

Query: 371 LYPTQSRATGVSWSNAIGRCGAIVGSLSGGMMM-ALNFSFDTLFFVIAI 418
P ++R +I G VG GGM+ +++S+ L +I I
Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITI 179


27SeKA_A1813SeKA_A1848Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1813016-3.988445putative inner membrane protein
SeKA_A1814113-2.747160nucleoid-associated protein NdpA
SeKA_A18151150.309882conserved hypothetical protein
SeKA_A18160181.321862inner membrane protein YejM
SeKA_A18182357.444592*putative virulence protein msgA
SeKA_A18192398.719003putative outer membrane protein
SeKA_A182044711.653317nitrate/nitrite response regulator protein NarP
SeKA_A182175313.391120cytochrome c-type biogenesis protein H2
SeKA_A182275413.827425heme lyase disulfide oxidoreduCtase, cytocyhrome
SeKA_A182385715.295539cytochrome c-type biogenesis protein CcmF
SeKA_A182444712.487963cytochrome c-type biogenesis protein CcmE
SeKA_A182534111.403997heme exporter protein CcmD
SeKA_A182623710.360426heme exporter protein C
SeKA_A18270297.178248heme exporter protein CcmB
SeKA_A18280245.621482heme ABC exporter, ATP-binding protein CcmA
SeKA_A1829-1193.479402cytochrome c-type protein napC
SeKA_A1830-2193.425273periplasmic nitrate reductase, diheme cytochrome
SeKA_A1832-2173.612286periplasmic nitrate reductase, NapG
SeKA_A1833-2163.826384periplasmic nitrate reductase, large subunit
SeKA_A1835-1153.701717ferredoxin-type protein NapF
SeKA_A1836-2152.904461ecotin
SeKA_A1837-3121.476448ABC transporter ATP-binding protein YojI
SeKA_A1838-2131.060403alpha-ketoglutarate-dependent dioxygenase AlkB
SeKA_A18390151.154176regulatory protein ada
SeKA_A1840-112-0.632612thiamine biosynthesis lipoprotein ApbE
SeKA_A1841-112-2.160570outer membrane protein C
SeKA_A1843-111-3.459778Hpt domain protein
SeKA_A1845-211-3.531062sensor kinase protein RcsC
SeKA_A1846-113-3.698289DNA gyrase, A subunit
SeKA_A1847-113-5.589517mandelate racemase
SeKA_A1848-114-4.414693putative permease
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1820HTHFIS682e-15 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 67.9 bits (166), Expect = 2e-15
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 2/114 (1%)

Query: 9 VLIVDDHPLMRRGIRQLLELDPAFYVVAEAGDGASAIDLANRIEPDLILLDLNMKGLSGL 68
+L+ DD +R + Q L A Y V + A+ + DL++ D+ M +
Sbjct: 6 ILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 69 DTLNALRRDGVTAQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRK 122
D L +++ +++++ ++ + GA YL K D L+ I +
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1824PF04335280.014 VirB8 type IV secretion protein
		>PF04335#VirB8 type IV secretion protein

Length = 227

Score = 27.9 bits (62), Expect = 0.014
Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 1 MNLRRKNRLWVVCAVLAGLGLTTALVLYAL 30
R K WVV V L + + AL
Sbjct: 27 AAERSKKLAWVVAGVAGALATAGVVAVAAL 56


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1825PF06580240.049 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 23.7 bits (51), Expect = 0.049
Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 2 GGYAFFVWLAVAMTVAPLALLALHTVLQRRAILRGVAQQQAREARMRAAQAQ 53
F V + M ++ I + A+EA++ A +AQ
Sbjct: 118 LSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQ 169


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1841ECOLIPORIN5390.0 E.coli/Salmonella-type porin signature.
		>ECOLIPORIN#E.coli/Salmonella-type porin signature.

Length = 383

Score = 539 bits (1391), Expect = 0.0
Identities = 261/389 (67%), Positives = 298/389 (76%), Gaps = 17/389 (4%)

Query: 1 MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIG 60
MK KVL+L++PALL AGAA+AAEIYNKDGNKLDL+GKVDGLHYFSDD DGDQTYMR+G
Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG 60

Query: 61 FKGETQVNDQLTGYGQWEYQIQGNQTEG-SNDSWTRVAFAGLKFADAGSFDYGRNYGVTY 119
FKGETQ+NDQLTGYGQWEY +Q N TEG +SWTR+AFAGLKF D GSFDYGRNYGV Y
Sbjct: 61 FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY 120

Query: 120 DVTSWTDVLPEFGGDTYG-ADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKNGSVS 178
DV WTD+LPEFGGD+Y ADN+M R NG ATYRNTDFFGLVDGL+FALQYQGKN S S
Sbjct: 121 DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNESQS 180

Query: 179 GEN--------TNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTANDRL 230
++ NG + NGDG+G S TY IG GFS G A TTS RT +Q N
Sbjct: 181 ADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGG--T 238

Query: 231 YGNGDRATVYTGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVV 290
GD+A +T GLKYDANNIYLA YS+T N T +G ++ G ANK QNFEV
Sbjct: 239 IAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDK---GYDGGVANKTQNFEVT 295

Query: 291 AQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKI 350
AQYQFDFGLRP+V++L SKGKD++ + D+D+VKY DVGATYYFNKN STYVDYKI
Sbjct: 296 AQYQFDFGLRPAVSFLMSKGKDLTYN-NVNGDDKDLVKYADVGATYYFNKNFSTYVDYKI 354

Query: 351 NLLDKND-FTRDAGINTDDIVALGLVYQF 378
NLLD +D F +DAGI+TDDIVALG+VYQF
Sbjct: 355 NLLDDDDPFYKDAGISTDDIVALGMVYQF 383


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1845HTHFIS801e-17 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 79.9 bits (197), Expect = 1e-17
Identities = 29/104 (27%), Positives = 47/104 (45%)

Query: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886
ILV DD R +L L GY + ++ ++ D+V++DV MP+ + + L
Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

Query: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
RI++ LPV+ ++A + E G L KP L
Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1848TCRTETB310.012 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 30.6 bits (69), Expect = 0.012
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 12/179 (6%)

Query: 25 ILYFFNYMDRVNIGFAALRMNESLGITPEDFANISSIFFISYLIFQIPSSIGLQKLGARK 84
IL FF+ ++ + + + + P +++ F +++ I +LG ++
Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80

Query: 85 W--ISSIIIGWGAVTGLIFFAKDTQHIL-LARIFLGVFEAGFFPGMVYYLACWFPARERG 141
II +G+V G F +L +AR G A F ++ +A + P RG
Sbjct: 81 LLLFGIIINCFGSVIG--FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138

Query: 142 KVNSFFMLSIAVASVLAAPMSGWIIEHLNTPDYEGWRWLFAIEGIPTVFLGILTFYLLP 200
K +A+ + + G I ++ W +L I I T+ LL
Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYI------HWSYLLLIPMI-TIITVPFLMKLLK 190


28SeKA_A1864SeKA_A1911Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1864-116-3.359747transporter, major facilitator family
SeKA_A1865-117-4.921698mandelate racemase/muconate lactonizing enzyme
SeKA_A1866017-5.037603putative transcriptional regulator
SeKA_A1867018-5.756950competence damage-inducible protein A
SeKA_A1868022-8.362256putative inner membrane protein
SeKA_A1870-122-6.424598TnpA
SeKA_A1871014-0.970462hypothetical protein
SeKA_A1872-1110.088368beta-lactamase
SeKA_A18730100.609805nudix hydrolase
SeKA_A1874-1110.873252Ais protein
SeKA_A1875-1121.702195UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate
SeKA_A1876-1131.485597undecaprenyl-phosphate
SeKA_A1877-2141.530820bifunctional polymyxin resistance protein ArnA
SeKA_A18780153.638686polysaccharide deacetylase domain protein
SeKA_A18790154.173523undecaprenyl
SeKA_A18801145.390711inner membrane protein YfbW
SeKA_A18811145.302643membrane protein YfbJ
SeKA_A18820135.905873signal transduction protein PmrD
SeKA_A18831125.752688O-succinylbenzoate-CoA ligase
SeKA_A18840114.871934O-succinylbenzoic acid (OSB) synthetase
SeKA_A18850134.182768naphthoate synthase
SeKA_A18860124.100531acyl-CoA thioester hydrolase YfbB
SeKA_A18870122.9453512-succinyl-6-hydroxy-2,
SeKA_A18880120.773638menaquinone-specific isochorismate synthase
SeKA_A1889014-0.549654protein ElaB
SeKA_A18901305.115767protein ElaA
SeKA_A18911274.082769ribonuclease Z
SeKA_A18921284.396522CheW protein
SeKA_A18932284.652917von Willebrand factor, type A
SeKA_A18943315.316943hypothetical protein
SeKA_A18963315.436468ShdA
SeKA_A18983222.243140transposase (IS4 family)
SeKA_A18993304.130442NADH-quinone oxidoreductase, N subunit
SeKA_A19002293.161847NADH-quinone oxidoreductase, M subunit
SeKA_A19010284.154781NADH-quinone oxidoreductase, L subunit
SeKA_A1902-1304.229288NADH-quinone oxidoreductase, K subunit
SeKA_A1903-1294.262722NADH-quinone oxidoreductase, J subunit
SeKA_A19040294.154080NADH-quinone oxidoreductase, I subunit
SeKA_A1905-1274.143257NADH-quinone oxidoreductase, H subunit
SeKA_A1906-1274.228864NADH-quinone oxidoreductase, G subunit
SeKA_A1907-2242.823732NADH oxidoreductase (quinone), f subunit
SeKA_A1908-2161.373019NADH-quinone oxidoreductase, E subunit
SeKA_A1909-115-0.011524NADH-quinone oxidoreductase, C/D subunit
SeKA_A1910-217-2.429464NADH-quinone oxidoreductase, B subunit
SeKA_A1911-115-3.249156NADH-quinone oxidoreductase, A subunit
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1875TYPE3IMSPROT330.002 Type III secretion system inner membrane S protein ...
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

family signature.
Length = 354

Score = 32.8 bits (75), Expect = 0.002
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 102 NPVMVDVDRDTLMVT-PEHIEAAIT-PQTKAIIP-VHYAGAPADLDAIYALGERYGIPVI 158
+ +V R +++V P HI I + + +P V + A + + + E G+P++
Sbjct: 248 RNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPIL 307

Query: 159 ED 160
+
Sbjct: 308 QR 309


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1877NUCEPIMERASE1161e-30 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 116 bits (292), Expect = 1e-30
Identities = 75/362 (20%), Positives = 136/362 (37%), Gaps = 60/362 (16%)

Query: 316 IRVLILGVNGFIGNHLTERLLNEENYEVYGMDIGSN--------AISRFLLHPRFHFVEG 367
++ L+ G GFIG H+++RLL E ++V G+D ++ A L P F F +
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLL-EAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59

Query: 368 DISIHSEWIE--YHVKKCDVVLPLVAIATPIEYT-RNPLRVFELDFEENLRIIRYCVKYR 424
D++ E + + + V + Y+ NP + + L I+ C +
Sbjct: 60 DLADR-EGMTDLFASGHFERVFISPHRLA-VRYSLENPHAYADSNLTGFLNILEGCRHNK 117

Query: 425 -KRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGL 483
+ +++ S+S VYG+ F D V+ P +Y+ +K+ + + Y GL
Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTD------DSVDHPVSLYAATKKANELMAHTYSHLYGL 171

Query: 484 RFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDG 543
T R F GP + A ++A+ +EG I + + G+ KR FT I D
Sbjct: 172 PATGLRFFTVYGPWGRP-DMALFKFTKAM-------LEGKSIDVYNYGKMKRDFTYIDDI 223

Query: 544 VEALFRIIVNDGDR---------------CDGKIINIGNPDNEASIQELATLLLDSFDKH 588
EA+ R+ ++ NIGN + + L D+
Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVE-LMDYIQALEDALGIE 282

Query: 589 PLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDF 648
+ P G DV + + P ++D V+ +++
Sbjct: 283 AKKNMLPLQPG---------------DVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327

Query: 649 FL 650
+
Sbjct: 328 YR 329


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1890AUTOINDCRSYN300.002 Autoinducer synthesis protein signature.
		>AUTOINDCRSYN#Autoinducer synthesis protein signature.

Length = 216

Score = 30.2 bits (68), Expect = 0.002
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 1 MIDWQDLHHSELTVPQLYALLKLRCAVFV--------VEQRCPYLDVDGDDLVGDNRHIL 52
M++ D++H+ L+ + L LR F + D + + ++
Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNN----NTTYLF 56

Query: 53 GWHQDELVAYARIL 66
G + ++ R +
Sbjct: 57 GIKDNTVICSLRFI 70


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1891BINARYTOXINB310.008 Binary toxin B family signature.
		>BINARYTOXINB#Binary toxin B family signature.

Length = 764

Score = 30.8 bits (69), Expect = 0.008
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 91 VYGPQGVREFIATTLRLS--GSWTDFPMQIEEISAGDILDDG-----LRKVTAFRLEHPL 143
VYG F +R+ +W++ QI+E +A I + R++ A PL
Sbjct: 484 VYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPL 543

Query: 144 E 144
E
Sbjct: 544 E 544


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1892HTHFIS491e-08 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 49.1 bits (117), Expect = 1e-08
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 16/135 (11%)

Query: 185 PGAVAIVAEDSKVARAMLEKGLNAMGIPHQMHVTGKDAWERIQQLAQEAEAEGKPISEKI 244
GA +VA+D R +L + L+ G ++ W I +
Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-------------AGDG 48

Query: 245 ALVLTDLEMPEMDGFTLTRKIKTDERLKKIPVVIHSSLSGSANEDHIRKVQADGYVAK-F 303
LV+TD+ MP+ + F L +IK + +PV++ S+ + + A Y+ K F
Sbjct: 49 DLVVTDVVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106

Query: 304 EINELSSVIQEVLER 318
++ EL +I L
Sbjct: 107 DLTELIGIIGRALAE 121


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1893IGASERPTASE330.004 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 33.1 bits (75), Expect = 0.004
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 8/178 (4%)

Query: 22 EPSDPQGNNPAELKQEQAIQKENSAQAGDDTVQKRQAEAAQQAAKKAAEYKAKAEAKALA 81
PS+ KQE ++N A + T Q R+ ++ KA +
Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091

Query: 82 DAKAGSLATAEAPQHEMRTRASASKAFAAQGGNVMGTA---RYEHYDENPIKQVSQAPLA 138
+ + T E E +A + V + + P + ++
Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151

Query: 139 TFSLD---VDTGSYANVRRFLNQGQLPPPEAVRVEEMLNYFPAPQ--PVADKQDNTKP 191
T ++ T + A+ + + + V +N + P T+P
Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1896PRTACTNFAMLY771e-15 Pertactin virulence factor family signature.
		>PRTACTNFAMLY#Pertactin virulence factor family signature.

Length = 910

Score = 76.6 bits (188), Expect = 1e-15
Identities = 103/488 (21%), Positives = 164/488 (33%), Gaps = 79/488 (16%)

Query: 2389 DSSPTDKLIVTGDTAGSTTLHITNVNGLGAQTVNGIEVIEVGGQSDGDFRLYK--GHVDI 2446
D +DKL+V D +G L + N +G + N + +++ S F L G VDI
Sbjct: 491 DLGLSDKLVVMQDASGQHRLWVRN-SGSEPASANTLLLVQTPLGSAATFTLANKDGKVDI 549

Query: 2447 NAWTYTLKQDGGDWYLRSESDDVPDDGGEVTPPDDGGEVTPPDDGGEVTPPDDGGEVTPP 2506
+ Y L +G + + P P + P P G E++
Sbjct: 550 GTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAA 609

Query: 2507 DDGGEVTPPDDDGEVTPPDDGGDITPPDDGGDITPPDGGDVTPVAPQYRADIGVYLGNQW 2566
+ + G V + + A
Sbjct: 610 ANAAV-------------------------------NTGGVGLASTLWYA---------- 628

Query: 2567 MARNLQMQTLYDREGSQYRSAD-GSIWMRFKAGKAESQAVNGNV--DIDSDYSQFQLGGD 2623
+ L R G + D G W R G A+ Q ++ D + F+LG D
Sbjct: 629 -----ESNALSKRLGELRLNPDAGGAWGR---GFAQRQQLDNRAGRRFDQKVAGFELGAD 680

Query: 2624 ILTWSDGAQSVTVGLMGSYINASTDSTGNRGADGSQFSANGSVDGYNLGLYATWFADAQS 2683
+ +G + Y TG+ G G D ++G YAT+ AD+
Sbjct: 681 -HAVAVAGGRWHLGGLAGYTRGDRGFTGDGG---------GHTDSVHVGGYATYIADS-- 728

Query: 2684 HRGAYIDSWYQYGAYNNSVDNDGLSASR----YDSAAHAVSLETGYRYDIALSNRNTVSL 2739
G Y+D+ + N G Y + SLE G R+ A + L
Sbjct: 729 --GFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHA----DGWFL 782

Query: 2740 TPQAQVTWQRYSADTVIDDGGTRISGQNDDSWTTRLGMRVDGKLYKESGRI-QPFMEVNW 2798
PQA++ R G R+ + S RLG+ V ++ GR QP+++ +
Sbjct: 783 EPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASV 842

Query: 2799 LHASDNASATF-GDTKVSQDLPNDRVEVKVGIQANVSERLSVYAQAAGQKGKNDYGDASF 2857
L D A +L R E+ +G+ A + S+YA KG +F
Sbjct: 843 LQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTF 902

Query: 2858 SLNMRYNW 2865
RY+W
Sbjct: 903 HAGYRYSW 910



Score = 33.1 bits (75), Expect = 0.019
Identities = 76/359 (21%), Positives = 120/359 (33%), Gaps = 38/359 (10%)

Query: 1025 ANSGWNGQSLTKTGAGTLILNAENTYTGGTLISDGTLVASNVEALGTGDITDNAVLELNT 1084
A++ WN QS+ KTG ++ + + GG + GT + + G + +N EL
Sbjct: 32 AHADWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQ-AQGILLENPAAELQF 90

Query: 1085 GGDFDNAISGSGQVVKSGDETLTLSGSNTYTGGTIISGGTLVATNVEALGTGDVTDNATL 1144
+G V SG L+ G + G + G LVA + GD D+ +
Sbjct: 91 ---------RNGSVTSSG--QLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGI 139

Query: 1145 ELNTGGDF------DNAIGGTGSVVKSGDKTLTLSGANSYTGGTTISGGTLVASNVEALG 1198
L G+ D+ + G G V GAN + I G L +++L
Sbjct: 140 ALYVAGEQAQASIADSTLQGAGGVQ-------IERGANVTVQRSAIVDGGLHIGALQSLQ 192

Query: 1199 SGDVTDNATLELNTGGDFANNIGGTGSVVKSGDKTLTLSGTNSYTG---GTTISGGTLVA 1255
D+ + + +T G +V G LTL G + G G G +V
Sbjct: 193 PEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVH 252

Query: 1256 NNVEALGTGDVTNNATLELNTGGDFDNAISGSGQVVKSGDKTLTLSGANSYSGATTISGG 1315
+ GD + GG A+ G G Y + S
Sbjct: 253 LQRATIRRGDAPAGGAVP---GG----AVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSV 305

Query: 1316 TLIATHVNALGTGA---IDNRASLLLDASGQFTVTDLTTESGGNTEIGAGSTLQATTLT 1371
L + V A GA + A + + E+GG + + TL
Sbjct: 306 ELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQ 364


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1910FLGBIOSNFLIP280.019 Escherichia coli: Flagellar biosynthetic protein Fl...
		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP

signature.
Length = 245

Score = 28.3 bits (63), Expect = 0.019
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 68 MVTSFT---AVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEP 120
M+TSFT V + R A P Q L + F M+PVI ++Y +P
Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQP 115


29SeKA_A1950SeKA_A1967Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1950-1163.629926DedD protein
SeKA_A1951-1153.359333tetrahydrofolate synthase/dihydrofolate
SeKA_A1952-1142.585229acetyl-CoA carboxylase, carboxyl transferase,
SeKA_A1953-1143.457486membrane protein, DedA family
SeKA_A1954-2153.739618tRNA pseudouridine synthase A
SeKA_A1955-2143.328317aspartate-semialdehyde dehydrogenase family
SeKA_A1956-1160.993836erythronate-4-phosphate dehydrogenase
SeKA_A1957-1161.110145protein div
SeKA_A1958-1142.247102protein YfcJ
SeKA_A1959-2160.826605putative cytoplasmic protein
SeKA_A1960-3141.018654putative periplasmic protein
SeKA_A1961-3121.405288caax amino protease family
SeKA_A1962-3123.4774543-oxoacyl-[acyl-carrier-protein] synthase 1
SeKA_A1963-1153.804821protein YfcK
SeKA_A1964-1172.963125YfcL protein
SeKA_A1965-1152.985964conserved hypothetical protein
SeKA_A1966-1122.376966putative membrane protein
SeKA_A1967-193.194443penicillin-insensitive murein endopeptidase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1950PERTACTIN300.009 Pertactin signature.
		>PERTACTIN#Pertactin signature.

Length = 922

Score = 29.7 bits (66), Expect = 0.009
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 99 PIPAETPKPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGALKNA 158
P P P+P P P+P PQ P P QP A P G+ L A NA
Sbjct: 569 PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRE----LSAAANA 624



Score = 28.5 bits (63), Expect = 0.026
Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 106 KPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGA 154
K P KP PQP PQ P P P P +A Q A
Sbjct: 566 KAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPA 614


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1954FbpA_PF05833290.026 Fibronectin-binding protein
		>FbpA_PF05833#Fibronectin-binding protein

Length = 577

Score = 28.7 bits (64), Expect = 0.026
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 204 VRNIVGS-LLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDYPDRFDLPKPP 262
+NI GS ++ + PES + E AA LAA +K++ V VDY + ++ KP
Sbjct: 496 TKNIPGSHVIVKNIMDIPESTLLE--AAN---LAAYYSKSQNSSNVPVDYTEVKNVKKPN 550

Query: 263 MGP 265

Sbjct: 551 GAK 553


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1958TCRTETA448e-07 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 43.7 bits (103), Expect = 8e-07
Identities = 77/362 (21%), Positives = 131/362 (36%), Gaps = 30/362 (8%)

Query: 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYSNTMV---GIAVGIQFFATVLTRGY 70
N L I V L + +GL +PV+P + +L +SN + GI + +
Sbjct: 4 NRPLIVILSTVALDAVGIGLIMPVLPGLLR-DLVHSNDVTAHYGILLALYALMQFACAPV 62

Query: 71 AGRLADQYGAKRSALQGMFACGLAGAAWLLAALLPVSAPIKFALLIVGRLILGFGESQLL 130
G L+D++G + L + A + + A P +L +GR++ G +
Sbjct: 63 LGALSDRFGRRPVLLVSLA---GAAVDYAIMATAPF-----LWVLYIGRIVAGITGATGA 114

Query: 131 TGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLL---IHSHFGFAALAGTTMVL 187
G R+ + + + AG LG L H F A A +
Sbjct: 115 VAGAYIADITDGDERA-RHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLN 173

Query: 188 PLLAWAFNGTVRKVPAYTGERPSLWSVVGLIWKPGL-----------GLALQGVGFAVIG 236
L K R +L + W G+ + L G A +
Sbjct: 174 FLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALW 233

Query: 237 TFISLYFVSNGWTMAGFTLTAFGGAFVLMR-MLFGWMPDRFGGVKVAVVSLLVETAGLLL 295
T G +L AFG L + M+ G + R G + ++ ++ + G +L
Sbjct: 234 VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYIL 293

Query: 296 LWLAPTAWIALVGAALTGAGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTG 355
L A W+A L +G + PAL + ++V + +G G AA ++ + G
Sbjct: 294 LAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLT-SIVG 351

Query: 356 PL 357
PL
Sbjct: 352 PL 353



Score = 29.4 bits (66), Expect = 0.029
Identities = 32/137 (23%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 261 AFVLMRMLF----GWMPDRFGGVKVAVVSLLVETAGLLLLWLAPTAWIALVG---AALTG 313
+ LM+ G + DRFG V +VSL ++ AP W+ +G A +TG
Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG 110

Query: 314 AGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSCGYPSVFLA 373
A G + R G +A V GP+ G L + F A
Sbjct: 111 A----TGAVAGAYIADITDGDERARHFGFMSACFGFGM-VAGPVLGGLMGGFSPHAPFFA 165

Query: 374 GAISAVVGILVTILSFR 390
A + L
Sbjct: 166 AAALNGLNFLTGCFLLP 182


30SeKA_A2016SeKA_A2024Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2016223-1.956420CysZ protein
SeKA_A2017426-1.643992cysteine synthase A
SeKA_A2018320-0.942180conserved hypothetical protein
SeKA_A20191151.197170phosphocarrier protein PtsH
SeKA_A20200131.486891phosphoenolpyruvate-protein phosphotransferase
SeKA_A2021-2142.404078PTS system, glucose-specific IIA component
SeKA_A2022-2163.618350putative cytoplasmic protein
SeKA_A2023-2163.831647pyridoxal kinase
SeKA_A2024-2153.543835GntR-family transcriptional regulator
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2020PHPHTRNFRASE7500.0 Phosphoenolpyruvate-protein phosphotransferase sign...
		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

signature.
Length = 572

Score = 750 bits (1938), Expect = 0.0
Identities = 276/571 (48%), Positives = 388/571 (67%), Gaps = 2/571 (0%)

Query: 1 MISGILASPGIAFGKALLLKEDEIVIDRKKISADKVDQEVERFLSGRAKASAQLEAIKTK 60
I+GI AS G+A KA + E + I++ I V E+E+ + K+ +L AIK +
Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSI--TDVSTEIEKLTAALEKSKEELRAIKDQ 61

Query: 61 AGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQATALEELDD 120
+ G +K IF H+++L+D EL I I+++ M A+ A EV + + E +D+
Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121

Query: 121 EYLKERAADVRDIGKRLLRNILGLAIIDLSAIQEEVILVAADLTPSETAQLNLQKVLGFI 180
EY+KERAAD+RD+ KR+L +++G+ L+ I EE +++A DLTPS+TAQLN Q V GF
Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181

Query: 181 TDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNGDYLILDAVNNQVYVNPTNDVIEQLR 240
TD GGRTSH++IM+RSLE+PA+VGT VT ++++GD +I+D + V VNPT + ++
Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241

Query: 241 AVQEQVATEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFL 300
+ +K E AKL P+ T DG VE+ ANIGT +DV+G NG EG+GLYRTEFL
Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301

Query: 301 FMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAV 360
+MDRD LPTEEEQF AYK V + + V++RT+DIGGDKEL Y+ PKE NPFLG+RA+
Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361

Query: 361 RIAMDRKEILRDQVRAILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGKAF 420
R+ +++++I R Q+RA+LRAS +G L++MFPMI ++EE+R + ++ K +L EG
Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421

Query: 421 DESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMISHLYQPMSPS 480
+SIE+G+MVE P+ A A AKEVDFFSIGTNDL QYT+A DR N+ +S+LYQP P+
Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481

Query: 481 VLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNT 540
+L L+ VI A+H+EGKW GMCGE+AGDE A LLLG+GLDEFSMSA SI + +
Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541

Query: 541 NFEDAKVLAEQALAQPTTDELMTLVNKFIEE 571
+ E+ K A++AL T +E+ LV K +
Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKKTYLK 572


31SeKA_A2035SeKA_A2054Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2035314-0.279937inner membrane protein YfeZ
SeKA_A2036012-0.176659acetyltransferase, GNAT family
SeKA_A20370130.880036N-acetylmuramoyl-L-alanine amidase AmiA
SeKA_A2038-1142.826914coproporphyrinogen III oxidase, aerobic
SeKA_A2039-1173.841003conserved hypothetical protein
SeKA_A2040-1204.243752hypothetical protein
SeKA_A20420195.477295HTH-type transcriptional regulator EutR
SeKA_A20430235.822052putative ethanolamine utilization protein EutK
SeKA_A20441236.396918putative ethanolamine utilization protein EutL
SeKA_A20451246.579955ethanolamine ammonia-lyase, light chain
SeKA_A20461246.455216ethanolamine ammonia-lyase, large subunit
SeKA_A20472217.372325ethanolamine utilization protein EutA
SeKA_A20482217.027326ethanolamine utilization protein EutH
SeKA_A20492217.374100ethanolamine utilization protein EutG
SeKA_A20502206.000892ethanolamine utilization protein EutJ
SeKA_A20512215.061323ethanolamine utilization protein EutE
SeKA_A20540163.872167ethanolamine utilization protein EutD
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2036SACTRNSFRASE332e-04 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 33.0 bits (75), Expect = 2e-04
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 24 LRPWNDPEMDIERKVNHDVSLFLVAEVSGEVVG--TVMGGYDGHRGSAYYLGVHPEFRGR 81
+ + D +MD+ + FL + +G + ++G + V ++R +
Sbjct: 47 FKQYEDDDMDVSYVEEEGKAAFL-YYLENNCIGRIKIRSNWNG-YALIEDIAVAKDYRKK 104

Query: 82 GIANALLNRLEKKLIARGCPKIQIMVRDDNDVVLGMYERLGY 123
G+ ALL++ + + + +D N Y + +
Sbjct: 105 GVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2050SHAPEPROTEIN503e-09 Bacterial cell shape determinant MreB/Mbl protein s...
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

signature.
Length = 347

Score = 50.1 bits (120), Expect = 3e-09
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 64 VRDGIVWDFFGAVTLVRRHLDTLEQQLGCRFT-HAATSFPPGTDP---RISINVLESAGL 119
++DG++ DFF +++ + + R + P G R + AG
Sbjct: 76 MKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGA 135

Query: 120 EVSHVLDEPTAVA---DLLALDNAG--VVDIGGGTTGIAIIKQGKVTYSADEATGG 170
+++EP A A L + G VVDIGGGTT +A+I V YS+ GG
Sbjct: 136 REVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGG 191


32SeKA_A2067SeKA_A2072Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2067-2103.372961nitrate/nitrite sensor protein NarQ
SeKA_A2068-2103.878087acriflavine resistance protein D
SeKA_A2069-1114.194471protein YffB
SeKA_A2070-1114.523745succinyl-diaminopimelate desuccinylase
SeKA_A2071-1134.468061conserved hypothetical protein
SeKA_A2072-1114.177866acetyltransferase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2067PF06580425e-06 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 41.8 bits (98), Expect = 5e-06
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 23/165 (13%)

Query: 406 SRALNDAYRQ---LRELLTTFRLTLQQADLPS-ALHEMLEDLQS-------QTPAKLTLD 454
+ L D + L L R +L+ ++ +L + L + S Q +L +
Sbjct: 184 ALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFE 243

Query: 455 CRLPTLALDAQMQVHLLQIVREAVLNAIKHA-----NASEIAVSCVTAPDGDHTVYIRDN 509
++ +D Q+ L+Q + E N IKH +I + T +G T+ + +
Sbjct: 244 NQINPAIMDVQVPPMLVQTLVE---NGIKHGIAQLPQGGKILLK-GTKDNGTVTLEVENT 299

Query: 510 GIGIGEPHEPAGHYGLNIMRERAERLGG---TLNFSQPSGGGTLV 551
G + + + GL +RER + L G + S+ G +
Sbjct: 300 GSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2068ACRIFLAVINRP12820.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 1282 bits (3318), Expect = 0.0
Identities = 652/1032 (63%), Positives = 802/1032 (77%), Gaps = 2/1032 (0%)

Query: 1 MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENT 60
MANFFI RPIFAWVLAI+L + GALAI LPV QYP +APP V ++ANYPGA AQT+++T
Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

Query: 61 VTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQNQLQSAMRKLPQ 120
VTQVIEQNM G+DNLMYMSS S G TITL+F +GTDPD A QVQN+LQ A LPQ
Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121 AVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180
VQ QG++V K+ + ++ FVS + + DI+DYVASN++D LSR+NGVGD+ +G+
Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 181 QYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL 240
QY+MRIWLD LN +++T DV + ++ QN QIA GQLGGTP++ Q LNA+I AQ+
Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240

Query: 241 QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEM 300
+ P++F +TLRVN DGS V+L DVA VELG E Y+ ++R NGKPA+GLG+KLA+GAN +
Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300

Query: 301 ATAKLVLDRLNELAQYFPQGLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQ 360
TAK + +L EL +FPQG++ Y+TT FV+ SI +VVKTL EAI LVFLVMYLFLQ
Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 361 NFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIM 420
N RATLIPTIAVPVVL+GTF++L AFGYSINTLTMF MVLAIGLLVDDAIVVVENVER+M
Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421 SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVL 480
E+ L P+EAT KSM QIQGALVGIAMVLSAVF+PMAFFGG+TGAIYRQFSITIVSAM L
Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481 SVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWFNRTFNRNAERYEKGVAKILHRSLRW 540
SVLVA+ILTPALCATLLKP+ + GFFGWFN TF+ + Y V KIL + R+
Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540

Query: 541 ILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSIQLPSGSTQQQTLKVVEKVENYYFTH 600
+LIY L++ GMV LFLRLP+SFLP+ED+G+F T IQLP+G+TQ++T KV+++V +YY +
Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600

Query: 601 EKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDARDPTTGSSFAIIERATKAFNQIKEA 660
EK N+ SVF+ G G QN FV LK W+ R+ S+ A+I RA +I++
Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660

Query: 661 RVFASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARDQLIELAGKN-SSLTRVRHNGL 719
V + PAI LG++ GFD EL D AG GHDAL AR+QL+ +A ++ +SL VR NGL
Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720

Query: 720 DDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYRM 779
+D+ Q ++++DQ KAQALGVS+ DIN T+ TA G +YVNDF+DRGRVKK+YVQA AK+RM
Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780

Query: 780 LPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAM 839
LP+D++ YVR+ +G MVPFSAF TS W GSPRLERYNG ++EI GEAAPG S+G AM
Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840

Query: 840 DVMESLVHQLPGGFGLEWTAMSYQERLSGAQGPALYAISLLVVFLCLAALYESWSVPFSV 899
+ME+L +LP G G +WT MSYQERLSG Q PAL AIS +VVFLCLAALYESWS+P SV
Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900

Query: 900 MLVVPLGVIGALLATWMRGLENDVYFKVGLLTVIGLSAKNAILIVEFANE-MNQKGHALL 958
MLVVPLG++G LLA + +NDVYF VGLLT IGLSAKNAILIVEFA + M ++G ++
Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960

Query: 959 DATLYASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFF 1018
+ATL A R RLRPILMTSLAFI GVLP+A S GAGSG+Q+AVG GVMGGM+SAT+LAIFF
Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020

Query: 1019 VPLFFVLIRRRF 1030
VP+FFV+IRR F
Sbjct: 1021 VPVFFVVIRRCF 1032


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2072AUTOINDCRSYN310.009 Autoinducer synthesis protein signature.
		>AUTOINDCRSYN#Autoinducer synthesis protein signature.

Length = 216

Score = 31.4 bits (71), Expect = 0.009
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 13/122 (10%)

Query: 459 SRIAVHPARQREGIGQQLIACACMQAAQCDYLSVSFGYT-------PELWRFWQRCGFVL 511
SR V +R ++ +G + + + + +Y S GY + +R G+
Sbjct: 100 SRFFVDKSRAKDILGNEYPISSMLFLSMINY-SKDKGYDGIYTIVSHPMLTILKRSGWG- 157

Query: 512 VRMGNHREASSGCYTAMALLPLSDAG-KRLAQQEHRRLRRDADILTQWNGEAIPLAALDE 570
+R+ + + LP+ D + LA++ +R ++ L QW + + A
Sbjct: 158 IRVVEQGLSEKEERVYLVFLPVDDENQEALARRINRSGTFMSNELKQW---PLRVPAAIA 214

Query: 571 QA 572
QA
Sbjct: 215 QA 216


33SeKA_A2091SeKA_A2116Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2091111-3.586637polyphosphate kinase
SeKA_A2092317-3.898609exopolyphosphatase
SeKA_A2093229-8.862168inner membrane protein YfgF
SeKA_A2094241-12.004952putative inner membrane protein
SeKA_A2095343-12.865053surface antigen family protein
SeKA_A2096542-13.366497Upf50.0
SeKA_A2097437-13.554482hypothetical protein
SeKA_A2098435-12.616379putative membrane protein
SeKA_A2100831-7.537123putative cytoplasmic protein
SeKA_A2101628-5.639872putative cytoplasmic protein
SeKA_A2102628-3.735931putative transposase B
SeKA_A2103430-2.518580plasmid stabilization system protein, RelE/ParE
SeKA_A2104529-2.443208conserved domain protein
SeKA_A2105633-7.376608transposase
SeKA_A2106739-9.242899transposase for insertion sequence element A
SeKA_A2107425-6.537182conserved hypothetical protein
SeKA_A2108317-4.315267integrase core domain protein
SeKA_A2109114-2.943371DNA-binding prophage protein
SeKA_A2110116-3.510862conserved hypothetical protein
SeKA_A21110122.385186HTH domain protein
SeKA_A21141194.026466gmp synthase (glutamine-hydrolyzing)
SeKA_A21151184.111198inosine-5'-monophosphate dehydrogenase
SeKA_A21160173.035511exodeoxyribonuclease VII, large subunit
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2096PYOCINKILLER290.009 Pyocin S killer protein signature.
		>PYOCINKILLER#Pyocin S killer protein signature.

Length = 617

Score = 29.4 bits (65), Expect = 0.009
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 3 KVILGAVLFTLSGSVLSSSLQDQLAAVAQAEQQGKNEENRQRDALQAKRDQEA--QQERQ 60
LFT + S L + AA A E N+ Q A ++ +E QQ
Sbjct: 185 TAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAI 244

Query: 61 RQANAAAV 68
R AN A+
Sbjct: 245 RAANTYAM 252



Score = 27.8 bits (61), Expect = 0.026
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 46 ALQAKRDQEAQQERQRQANAAAVAKQRAKAAEAERKARQAKLAAEA 91
+LQ + + + +A AA A+++A AAEA+RKA + A
Sbjct: 199 SLQIRMNTLTAAKASIEAAAANKAREQA-AAEAKRKAEEQARQQAA 243


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2105HTHTETR260.006 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 25.7 bits (56), Expect = 0.006
Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 21 GTRVGEVCRKMGISESTFYIY 41
T +GE+ + G++ Y +
Sbjct: 31 STSLGEIAKAAGVTRGAIYWH 51


34SeKA_A2130SeKA_A2149Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A21301153.2294584-hydroxy-3-methylbut-2-en-1-yl diphosphate
SeKA_A21312163.394927helix-turn-helix domain protein
SeKA_A21320142.591150radical SAM enzyme, Cfr family
SeKA_A2133-1134.738335nucleoside diphosphate kinase
SeKA_A2134-1135.014561putative polyferredoxin
SeKA_A2135-1134.991341putative anaerobic reductase component
SeKA_A2136-1124.582167dimethylsulfoxide reductase, chain B
SeKA_A21370123.953057anaerobic dimethyl sulfoxide reductase chain a
SeKA_A21380134.366869penicillin-binding protein 1C
SeKA_A21390143.350122YfhM
SeKA_A21400140.708039conserved hypothetical protein
SeKA_A2141-112-0.693137hypothetical protein
SeKA_A21420142.130546putative cytoplasmic protein
SeKA_A21440153.522832SseB protein
SeKA_A2145-1153.214448peptidase B
SeKA_A21462182.532615FeS assembly protein IscX
SeKA_A21472202.694986ferredoxin, 2Fe-2S type, ISC system
SeKA_A21481212.905331Fe-S protein assembly chaperone HscA
SeKA_A21492241.493789Fe-S protein assembly co-chaperone HscB
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2148SHAPEPROTEIN1191e-31 Bacterial cell shape determinant MreB/Mbl protein s...
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

signature.
Length = 347

Score = 119 bits (300), Expect = 1e-31
Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 68/368 (18%)

Query: 23 GIDLGTTNSLVATVRSGQAETLPDHEGRHLLPSVVHYQQQGHTVGYAARDNAAQDTANTI 82
IDLGT N+L+ G + +E PSVV A + ++
Sbjct: 14 SIDLGTANTLIYVKGQG----IVLNE-----PSVV------------AIRQDRAGSPKSV 52

Query: 83 SSV----KRMMGRSLADIQARYPHLPYRFKASVNGLPMIDTAAGLLNPVRVSADILKALA 138
++V K+M+GR+ +I A P M D G++ V+ +L+
Sbjct: 53 AAVGHDAKQMLGRTPGNIAAIRP--------------MKD---GVIADFFVTEKMLQHFI 95

Query: 139 ARA-SESLSGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDS 197
+ S S V++ VP +R+ +++A+ AG + L+ EP AAAI GL
Sbjct: 96 KQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPV 155

Query: 198 GKEGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAG--I 255
+ V D+GGGT +++++ L+ V +GGD FD + +Y+R G I
Sbjct: 156 SEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSLI 210

Query: 256 ADRSDNRVQRELLDAAIAAKIALSDADTVRVNVAG---WQG-----EITREQFNDLISAL 307
+ + R++ E+ A + + V G +G + + + +
Sbjct: 211 GEATAERIKHEI-------GSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263

Query: 308 VKRTLLACRRALKDAGVD-PQDVLE--VVMVGGSTRVPLVRERVGEFFGRTPLTAIDPDK 364
+ + A AL+ + D+ E +V+ GG + + + E G + A DP
Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLT 323

Query: 365 VVAIGAAI 372
VA G
Sbjct: 324 CVARGGGK 331


35SeKA_A2170SeKA_A2184Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2170-2154.260840inner membrane transporter YbgH
SeKA_A2171-2153.387538nitrogen regulatory protein P-II
SeKA_A2172-2153.696588transcriptional regulatory protein ZraR
SeKA_A2173-2153.718980conserved hypothetical protein
SeKA_A2176-3143.367354phosphoribosylformylglycinamidine synthase
SeKA_A2177-1131.456774conserved hypothetical protein
SeKA_A21780141.976005lytic transglycosylase, catalytic
SeKA_A2179-1181.805536tRNA-specific adenosine deaminase
SeKA_A2180017-0.075867HAD superfamily (subfamily IF) hydrolase, YfhB
SeKA_A2181015-1.697685phosphotransferase system, eiic
SeKA_A2182-116-3.155749N-acetylmuramic acid 6-phosphate etherase
SeKA_A2183-116-4.106408transcriptional regulator, RpiR family protein
SeKA_A2184014-4.0955272-dehydropantoate 2-reductase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2170TCRTETA320.007 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 31.7 bits (72), Expect = 0.007
Identities = 71/362 (19%), Positives = 119/362 (32%), Gaps = 52/362 (14%)

Query: 44 SHAINLFSAYA-SLVYVTPILGGWLADRLLGNRVAVITGALLMTLGHVVLGLESDSTLSL 102
+H L + YA P+LG +DR G R ++ + + ++ L +
Sbjct: 43 AHYGILLALYALMQFACAPVLGAL-SDRF-GRRPVLLVSLAGAAVDYAIMATAP--FLWV 98

Query: 103 YAALAIIICGYGLFKSNISCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLAAQ 162
I+ G + + ++ D+ R GF + A G +A P+ GL
Sbjct: 99 LYIGRIVAGITGATGAVAGAYIADITDGDERARHFGF--MSACFGFGMVAGPVLGGLMGG 156

Query: 163 WYGWHVGFALAGVGMFIGLLIFLSGHRHFQQTRGVNRPALRAVKFALPT-WGWLVLMLCI 221
+ H F A + L FL+G ++ R LR + W M +
Sbjct: 157 -FSPHAPFFAAA---ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVV 212

Query: 222 APVFFTLLLQNNWSGYVLAIVCVFAAQLI----ARIMVKFPEHRRALWQIVLLMITGTLF 277
A + F QL+ A + V F E R W + I+ F
Sbjct: 213 AALMAVF----------------FIMQLVGQVPAALWVIFGEDRFH-WDATTIGISLAAF 255

Query: 278 WVLAQQGGSSISLFIDRFVNRHWLNMTVPTALFQSVNAIAVMAAGVVLAWLSSPKESARS 337
+L S I V IA ++LA+ +
Sbjct: 256 GIL----HSLAQAMITGPVAARLGERRALMLGM-----IADGTGYILLAFAT-------- 298

Query: 338 VLRVWLKFAVGLVLMGGGFMLLALNAHQARLDGQASMGMMIAGLALMGFAELFIDPVAMA 397
R W+ F + ++L GG + AL A +R + G + LA + + P+
Sbjct: 299 --RGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356

Query: 398 QI 399
I
Sbjct: 357 AI 358


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2172HTHFIS481e-170 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 481 bits (1240), Expect = e-170
Identities = 166/480 (34%), Positives = 247/480 (51%), Gaps = 42/480 (8%)

Query: 7 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEGLRVLHREKVDLVISDLRMDEMDGM 66
A +L+ DDD + +L L+ GY V + R + DLV++D+ M + +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 67 QLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTKPIDRDALYKAIDEALE--- 123
L I+K +P +PV++++A + A+ A++KG + +L KP D L I AL
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 124 --QSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEIFAQAIHNA 181
S D +V RS M + + Q+D++++I G+SGTGKE+ A+A+H+
Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183

Query: 182 SPRSNKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 241
R N PFVAIN A+P L+ESELFGH +GAFTGA + G F+ AEGGTLFLDEIGDM
Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243

Query: 242 PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV 301
P Q +LLRVLQ+ + +G I DVRI++AT++DL +++ +G FREDLYYRLNVV
Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303

Query: 302 SLKIPALAERTEDIPLLANHLLRQSAQRHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 361
L++P L +R EDIP L H ++Q+ + V+ F +A++ + WPGNVR+L N++
Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAEKEGLD-VKRFDQEALELMKAHPWPGNVRELENLV 362

Query: 362 EQCVALTSSPVISDALVEQALEGENTALPT------------------------------ 391
+ AL VI+ ++E L E P
Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422

Query: 392 ------FAEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 445
+ + E + L T+GN AA + G NR K + +
Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSR 482


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2184PF08280290.032 M protein trans-acting positive regulator
		>PF08280#M protein trans-acting positive regulator

Length = 530

Score = 28.7 bits (64), Expect = 0.032
Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 28/144 (19%)

Query: 74 LFTKAMQLDSMLQRIKPLLPAA--------KVVMILS-NGLGNIETL---------EKYV 115
LF + +L I LLP K +M S + L N++ Y
Sbjct: 318 LFEENDTFRLLLNPIITLLPNLKEQKASLVKALMFFSKSFLFNLQHFIPETNLFVSPYYK 377

Query: 116 DRQKIYAG----VTLWSSELEGAGHIMATGTG--TIELQPIASQDSAQEAKVIATLNSAG 169
QK+Y V W ++L G ++ ++ I + Q V+ + S
Sbjct: 378 GNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILR--NIQPPLVVVFVASNF 435

Query: 170 LNAEISSDVLLSIW--KKAAFNSV 191
+NA + +D + K F+S
Sbjct: 436 INAHLLTDSFPRYFSDKSIDFHSY 459


36SeKA_A2230SeKA_A2305Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2230-123-3.407137hypothetical protein
SeKA_A2231023-2.563879putative periplasmic protein
SeKA_A2232021-2.586357inner membrane protein YfiN
SeKA_A2233321-1.046973ribosomal protein L19
SeKA_A2234115-0.649694tRNA (guanine-N1)-methyltransferase
SeKA_A2235216-2.09174316S rRNA processing protein RimM
SeKA_A2236116-1.736893ribosomal protein S16
SeKA_A2237113-1.855329conserved hypothetical protein
SeKA_A2238112-0.616644signal recognition particle protein
SeKA_A2240011-1.432966CBS/transporter associated domain protein
SeKA_A2241212-1.577436conserved hypothetical protein
SeKA_A2242111-0.486730co-chaperone GrpE
SeKA_A2243112-0.874817NAD(+) kinase
SeKA_A2244214-1.986856DNA repair protein RecN
SeKA_A22454163.884060small protein A
SeKA_A22463163.983820protein YfjF
SeKA_A22472153.968763polyketide cyclase/dehydrase family protein
SeKA_A22482153.930670SsrA-binding protein
SeKA_A22492143.477943hypothetical protein
SeKA_A22502143.702238conserved hypothetical protein
SeKA_A2251-117-1.967776type I secretion outer membrane protein, TolC
SeKA_A2252022-4.029629protein secretion ABC efflux system, permease
SeKA_A2253131-8.888213type I secretion membrane fusion protein, HlyD
SeKA_A2259544-12.625264conserved hypothetical protein
SeKA_A2258537-10.028380hypothetical protein
SeKA_A2260444-9.839809conserved hypothetical protein
SeKA_A2261645-8.632090hypothetical protein
SeKA_A2263645-8.636255transposase B
SeKA_A2262645-8.326335conserved hypothetical protein
SeKA_A2264644-8.220339transposase subfamily
SeKA_A2265643-7.713837conserved hypothetical protein
SeKA_A2266639-6.916412nuclease-related domain family
SeKA_A2267523-0.497268hypothetical protein
SeKA_A2268522-0.328571protein YpjI
SeKA_A2269422-3.139782antirestriction protein
SeKA_A2270730-3.394053DNA repair protein, RadC family
SeKA_A2271527-4.781093conserved hypothetical protein
SeKA_A2272323-2.847423putative antitoxin module of toxin-antitoxin
SeKA_A22730141.137553toxin of the YeeV-YeeU toxin-antitoxin system
SeKA_A22740132.569027repressor of phase 1 flagellin gene
SeKA_A22750133.044050flagellin
SeKA_A2276-1132.908043DNA-invertase hin
SeKA_A2277-1132.274703IroB protein
SeKA_A22780141.136729ATP binding cassette
SeKA_A2279218-2.861886enterochelin esterase
SeKA_A2280322-5.585552IroE
SeKA_A2281224-6.073448TonB dependent outer membrane siderophore
SeKA_A2283123-5.299917effector protein pipB2
SeKA_A2284-115-3.651191virulence protein
SeKA_A2285-215-2.880912Mig-14
SeKA_A2286-3120.413347putative inner membrane protein
SeKA_A2287-3121.349662high-affinity nickel transport protein
SeKA_A2288-3132.839746tricarboxylic transport: regulatory protein
SeKA_A2289-2152.137959transcriptional regulatory protein TctD
SeKA_A2290-1193.201294conserved hypothetical protein
SeKA_A22911213.912800tricarboxylic transport
SeKA_A22922224.261269tricarboxylic transport
SeKA_A22932183.064752integral membrane protein
SeKA_A22943172.939314hypothetical protein
SeKA_A22963162.499171putative FAD dependent oxidoreductase
SeKA_A22974141.349005succinate-semialdehyde dehydrogenase (NADP+)
SeKA_A2298314-0.0749084-aminobutyrate transaminase
SeKA_A2299318-1.386328gaba permease
SeKA_A2300123-1.208876transcriptional regulator, GntR family
SeKA_A2301323-3.903668peptidoglycan-binding LysM
SeKA_A2302324-3.205311conserved domain protein
SeKA_A2303120-2.627117regulatory protein, ArsR
SeKA_A2304-218-2.765884inner membrane protein YgaP
SeKA_A2305-119-3.563967conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2244RTXTOXIND320.009 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 31.7 bits (72), Expect = 0.009
Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 177 QQQSQERAARAELLQYQLKELNDFNPQAGEFEQIDEEYKRLANSGQLLTTSQNALALLAD 236
+ QS AR E +YQ+ + + E + DE Y + + ++L + +
Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS- 196

Query: 237 GEDVNLQSQLYSAKQLVSELVGMDSKLSGILDMLEEATIQLTEASDELRHYCERLDLDPN 296
Q+Q Y Q L ++ +L A I E +
Sbjct: 197 ----TWQNQKY---QKELNLDKKRAERLTVL-----ARINRYENLSRV------------ 232

Query: 297 RLFELEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQQLDDQADSLETLTLAVNKHHQQ 356
+ R+ SL K ++ ++LE++ + + + L + + +
Sbjct: 233 ----EKSRLDDFSSLLHKQAIA-------KHAVLEQENKYVEAVNELRVYKSQLEQIESE 281

Query: 357 ALETAQALHQQRQFYAQE 374
L + Q + E
Sbjct: 282 ILSAKEEYQLVTQLFKNE 299


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2247FLGMOTORFLIM270.027 Flagellar motor switch protein FliM signature.
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

Length = 344

Score = 27.2 bits (60), Expect = 0.027
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 49 GSRVLESSPAQMTAAVDVSKAGISKTFTTRNQLTRNQSILMHLVDGPFKKLIGGWK---- 104
G+ VLE P+ + +D G + + LT I +++G +++ +
Sbjct: 113 GNAVLEVDPSITFSIIDRLFGGTGQAAKVQRDLT---DIENSVMEGVIVRILANVRESWT 169

Query: 105 -FTPLSPEACRIEFQLDF 121
L P +IE F
Sbjct: 170 QVIDLRPRLGQIETNPQF 187


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2250INTIMIN489e-07 Intimin signature.
		>INTIMIN#Intimin signature.

Length = 939

Score = 47.8 bits (113), Expect = 9e-07
Identities = 83/381 (21%), Positives = 125/381 (32%), Gaps = 55/381 (14%)

Query: 2334 ITVIAVDAAGNAS-PVSDSVNFVVDTTPPLTPVITSVSDDQAPGLGTIANGQN--TNDPT 2390
+T A D GN+S V ++ + + V+D A A+G T T
Sbjct: 527 VTARAYDRNGNSSNNVLLTITVL---SNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583

Query: 2391 PTFSGTAEAG--ATITLYENGTVIGTTTAQPDGAWSVATSTLASGTHVITAVATDAAGNS 2448
+G A+A + + V+ +A +G+ AT TL S V+ A +
Sbjct: 584 VKKNGVAQANVPVSFNIVSGTAVLSANSANTNGS-GKATVTLKSDKPGQVVVSAKTAEMT 642

Query: 2449 SP-NSTAFTLTVDTTAPQTPILTSVVDDVAGGVTGNLANGQ--ITNDNRPTLNGTAEAGS 2505
S N+ A T A T I A +ANGQ IT + +
Sbjct: 643 SALNANAVIFVDQTKASITEI--KADKTTA------VANGQDAITYTVKVMKGDKPVSNQ 694

Query: 2506 VVSIYDGNTLLGVTSANAGGAWSFTPTTGLNDGTRTLTVTATDPA-GNVSPATSGFTIVV 2564
VT G S + +G +T+T+T P VS S + V
Sbjct: 695 -----------EVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSD--VAV 741

Query: 2565 DTLAPTVPLITSIVDDVPNNTGAIGNGQSTNDTQPTLNGTAEANSTVSIFDNGALVATVN 2624
D AP V T++ D N +G G L + L A+
Sbjct: 742 DVKAPEVEFFTTLTIDDGNIEI-VGTGVKGKLPTVWLQ-----------YGQVNLKASGG 789

Query: 2625 ANASGNWSWT---PTAALSQGSHAYSVSAADAAGNVSAASPSTTIIVDTIAPGAPGNLVI 2681
+G ++W P A S +S S TIA P +L++
Sbjct: 790 ---NGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIA--TPNSLIV 844

Query: 2682 NATGNRVTGTAEAGSTVTITS 2702
RVT +A +T
Sbjct: 845 PNMSKRVT-YNDAVNTCKNFG 864



Score = 43.1 bits (101), Expect = 2e-05
Identities = 66/311 (21%), Positives = 102/311 (32%), Gaps = 30/311 (9%)

Query: 2724 TPAQTNGQPLLAFTQDKAGNTGIAAGFTAPDTRVPEAPIITNVVDDVGIYTGAIANGQ-- 2781
+N + A D+ GN+ T + V D T A A+G
Sbjct: 518 VQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEA 577

Query: 2782 VTNDAQPTLNGTAQAGATVS--IYNNGALLGTTTANASGNWSFTPTGNLTEGSHAFT-AT 2838
+T A NG AQA VS I + A+L +AN +G+ T T L +
Sbjct: 578 ITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVT--LKSDKPGQVVVS 635

Query: 2839 ATNANGTGSVSTAATVIVDTLAPGTPSGTLSADGGSLSGQAEANSTVTVTLAGG------ 2892
A A T +++ A + VD +GQ TV V
Sbjct: 636 AKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQE 695

Query: 2893 VTLTTTAG----------SNGAWSLTLPTKQIEGQLINVTATDAAGN-ASGALGITAPVL 2941
VT TTT G +NG +TL + L++ +D A + + + +
Sbjct: 696 VTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLT 755

Query: 2942 PLAARDNITSLDLTSTAVTSTQNYSDYGLLLVGALGNVASVLGN------DTAQVEFTIA 2995
I + T Y L G G N D + + T+
Sbjct: 756 IDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLK 815

Query: 2996 EGGTGDVTIDA 3006
E GT +++ +
Sbjct: 816 EKGTTTISVIS 826



Score = 38.9 bits (90), Expect = 5e-04
Identities = 78/368 (21%), Positives = 135/368 (36%), Gaps = 41/368 (11%)

Query: 2197 IYNGSALVGTA-QVQANGSWSFT-------PSTSLGAGVWNLTATATDAAGNTSAASEIR 2248
+++ SAL Q+Q +GS S G+ V+ +TA A D GN+S + +
Sbjct: 486 VWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSS-NNVLL 544

Query: 2249 SFTIDTTAPAAPVIDTVYDGTGPITGNLSSGQ--ITDEARPVISGTREAN--TAIRLYDN 2304
+ T+ + V D T T + G IT A +G +AN + +
Sbjct: 545 TITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSG 603

Query: 2305 GTLLAEIPADNSSSWRYTPDASLATGNHVITVIAVDAAGNASPV-SDSVNFVVDTTPPLT 2363
+L+ A+ + S + T +L + V++ A S + +++V FV T +T
Sbjct: 604 TAVLSANSANTNGSGKAT--VTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASIT 661

Query: 2364 PVITSVSDDQAPGLGTIANGQN--TNDPTPTFSGTAEAGATITLYENGTVIGTTTAQPDG 2421
+ A +ANGQ+ T + +T + +T + D
Sbjct: 662 EI--KADKTTA-----VANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTD- 713

Query: 2422 AWSVATSTLASGTHVITAVATDAAGNSSPNSTAFTLTVDTTAPQTPILTSVVDDVAGGVT 2481
A TL S T + +A S V+ T I ++ V GV
Sbjct: 714 TNGYAKVTLTSTT---PGKSLVSARVSDVAVDVKAPEVEFFTTLT-IDDGNIEIVGTGVK 769

Query: 2482 GNLANGQITNDNRPTLNGTAEAGSV-VSIYDGNTLLGVTSANAGGAWSFTPTTGLNDGTR 2540
G L + +N A G+ + N + A++G T GT
Sbjct: 770 GKLPTVWL---QYGQVNLKASGGNGKYTWRSANPAIASVDASSG------QVTLKEKGTT 820

Query: 2541 TLTVTATD 2548
T++V ++D
Sbjct: 821 TISVISSD 828



Score = 38.5 bits (89), Expect = 6e-04
Identities = 61/272 (22%), Positives = 88/272 (32%), Gaps = 22/272 (8%)

Query: 1508 TLPVTSALPDGVYTLTAIAADAAGNSSGVSNSFTFTVDTVPLQPPVVN--EILDDVAPVT 1565
LP VY +TA A D GNS SN+ T+ TV VV+ + D A T
Sbjct: 513 ILPAYVQGGSNVYKVTARAYDRNGNS---SNNVLLTI-TVLSNGQVVDQVGVTDFTADKT 568

Query: 1566 GPLTDG--AFTNDRTLTINGSGENGSTVTIYDNGVAIGTALVTDGVWTFN-----TPELS 1618
DG A T T+ NG + V+ + GTA+++ N T L
Sbjct: 569 SAKADGTEAITYTATVKKNGVAQANVPVSF---NIVSGTAVLSANSANTNGSGKATVTLK 625

Query: 1619 EVSHALTFSATDDAGNTTAQTQPITITVDITAPPAPTIQTVDDDGTRVAGLADPYA-TVE 1677
+ A T+A I VD T I+ T VA D TV+
Sbjct: 626 SDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKT--TAVANGQDAITYTVK 683

Query: 1678 IHHADGTLVGSAVANGTGEFVVTLSPAQTDGGTLTAIAIDRAGNNGPATNFPASDSGLPA 1737
+ D + V T ++ S +TD + + + G +
Sbjct: 684 VMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLT-STTPGKSLVSARVSDVAVD 742

Query: 1738 VPAITAIEDDVGSVQGNIAA--GGATDDTTPT 1767
V A ++ G PT
Sbjct: 743 VKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPT 774


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2251RTXTOXIND355e-04 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 35.2 bits (81), Expect = 5e-04
Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 32/224 (14%)

Query: 209 DVVQTEARIESARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPD 268
+ EA +S L Q + + S D P S E
Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187

Query: 269 DRLVPAVLAAW-AQANVARANLDYASAQ---MTPTISLEPSVQHYLNDKYPSHEVLDKTQ 324
L+ + W Q NLD A+ + I+ ++ + L Q
Sbjct: 188 TSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247

Query: 325 YSTWVKVEMPLYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASAL 384
V + ++ +L +SQ + S
Sbjct: 248 AIAKHAVL-------------------------EQENKYVEAVNELRVYKSQLEQIES-- 280

Query: 385 QILRRQQQLSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARF 428
+IL +++ T +L++ + LD + ++ E+ +
Sbjct: 281 EILSAKEEYQLVT-QLFKNEILDKLRQTTDNIGLLTLELAKNEE 323


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2253RTXTOXIND2411e-77 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 241 bits (617), Expect = 1e-77
Identities = 95/432 (21%), Positives = 175/432 (40%), Gaps = 56/432 (12%)

Query: 18 ERAFSGAGRIVLICSLLFLILGI-WAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQ 76
E S R+V + FL++ + G+++ V+T NGK+ S R + ++ ++ I+ +
Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109

Query: 77 LTVREGDRVQANQIVARLDPTRLASSVGESAAKYRASLASSARLTAEVSDLPL------- 129
+ V+EG+ V+ ++ +L + ++ + + R + L
Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169

Query: 130 --AFPAELNGWPDLIAAETRLYKSR-----------RAQLADTEAELRDALASVNK---- 172
P N + + T L K + L AE LA +N+
Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229

Query: 173 ------ELTITQRLEKSGAASHVEVLRLQRQKSDLG---------------------LKI 205
L L A + VL + + + +
Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289

Query: 206 TDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGV 265
+ + + + L + + +L+ L E+ +R+PV V+ ++V T GGV
Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349

Query: 266 IPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETIS 325
+ +M IVP DD L + + +DI FI+ GQ A++K+ A+ Y YG L G V+ I+
Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409

Query: 326 PDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKP 385
D I+D+ + V I ++ L + + GM T +IKTG ++++ YL+ P
Sbjct: 410 LDAIEDQRLGL--VFNVIISIEENCLSTG-NKNIPLSSGMAVTAEIKTGMRSVISYLLSP 466

Query: 386 F-NRAKEALRER 396
E+LRER
Sbjct: 467 LEESVTESLRER 478


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2275FLAGELLIN2914e-95 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

Length = 507

Score = 291 bits (746), Expect = 4e-95
Identities = 265/510 (51%), Positives = 313/510 (61%), Gaps = 14/510 (2%)

Query: 2 AQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGL 61
AQVINTNSLSLLTQNNLNKSQS+L +AIERLSSGLRINSAKDDAAGQAIANRFT+NIKGL
Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60

Query: 62 TQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN 121
TQASRNANDGISIAQTTEGALNEINNNLQRVREL+VQ+ N TNS SDL SIQ EI QRL
Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120

Query: 122 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDSLNVQKAYDV 181
EIDRVS QTQFNGVKVL+QDN + IQVGANDGETI IDL++I+ ++LGLD NV +
Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEA 180

Query: 182 DSKAVTVAANLDITDLNKDAALKAGTGATTGTAAIKDGKVYYDSASKNYYVEVTGLTTPD 241
+ ++ ++T + A + A+ K Y G T D
Sbjct: 181 -TVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239

Query: 242 DGKNGFYKVNVADDGKVSMTAGTAMEAGKPAGAVEVTKTQEEKNPLPLSTDLKTSLKSGG 301
D +N + TA AG G E + + D KT G
Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDY--KGVTFTIDTKTGNDGNG 297

Query: 302 ITDPEIAAAQVVKMSYTDKNGKTIDGGYAVKVGDNYYAAT-------QKKDGSFSVNTTS 354
I +V G ++ N Y + K + S +
Sbjct: 298 KVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSD 357

Query: 355 YTAADGTTKTALNQLGGADG----KTEVVSIDGKTYNASKAAGHDFKAQPELAEAAAKTT 410
A + + + GA+ + V++ GKT K A E A AA K+T
Sbjct: 358 LEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKST 417

Query: 411 ENPLQKIDAALAQVDALRSDLGAVQNRFNSAITNLGNTVNNLSSARSRIEDSDYATEVSN 470
NPL ID+AL++VDA+RS LGA+QNRF+SAITNLGNTV NL+SARSRIED+DYATEVSN
Sbjct: 418 ANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSN 477

Query: 471 MSRAQILQQAGTSVLAQANQVPQNVLSLLR 500
MS+AQILQQAGTSVLAQANQVPQNVLSLLR
Sbjct: 478 MSKAQILQQAGTSVLAQANQVPQNVLSLLR 507


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2288PF06580340.002 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 33.7 bits (77), Expect = 0.002
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 370 LLDNALKY----TPEQGIVTARLERDGDAVTLVVEDSGPGIDDEHIHLALQPFHRLDNVG 425
L++N +K+ P+ G + + +D VTL VE++G L N
Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--------------LKNTK 308

Query: 426 NVAGAGIGLALVND-IARLHRTHPHFSRSEALGGLYVRIRF 465
G GL V + + L+ T SE G + +
Sbjct: 309 E--STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2289HTHFIS972e-25 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 96.8 bits (241), Expect = 2e-25
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 1/122 (0%)

Query: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61
+L+A+D+ + L +AL + G+ V + + + L V D+ MP + +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEE-LDARLRALLRRSA 120
++ R++K LPVL+++A++ +K GA DYLPKPF+L E + RAL
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 121 GQ 122

Sbjct: 125 RP 126


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2301INTIMIN270.030 Intimin signature.
		>INTIMIN#Intimin signature.

Length = 939

Score = 27.3 bits (60), Expect = 0.030
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 82 SVDDQVKTTTPAAESQFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPE---KI 138
D ++ T FYT+K+G+T++ +SK N + I+ NK + S K
Sbjct: 48 GSDSKLLTHNSYQNRLFYTLKTGETVADLSKSQDINLST---IWSLNKHLYSSESEMMKA 104

Query: 139 YPGQVLRIP 147
PGQ + +P
Sbjct: 105 EPGQQIILP 113


37SeKA_A2346SeKA_A2433Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2346-1163.020228glucitol/sorbitol-specific phosphotransferase
SeKA_A2347-1152.252054sorbitol-6-phosphate 2-dehydrogenase
SeKA_A2348-1142.487337glucitol operon activator protein
SeKA_A2349-1133.860077glucitol operon repressor
SeKA_A23500134.524919gutQ protein
SeKA_A23510144.168429anaerobic nitric oxide reductase transcription
SeKA_A23521113.044714anaerobic nitric oxide reductase
SeKA_A23530133.744557nitric oxide reductase FlRd-NAD
SeKA_A23541133.895452[NiFe] hydrogenase maturation protein HypF
SeKA_A23551162.193188protein AegA
SeKA_A23560192.118708conserved hypothetical protein
SeKA_A2357-1243.459230putative periplasmic or exported protein
SeKA_A23580294.502705hydrogenase maturation peptidase HycI
SeKA_A23591295.603731formate hydrogenlyase maturation protein
SeKA_A23601275.548870formate hydrogenlyase, subunit G
SeKA_A23612255.141943formate hydrogenlyase, subunit F
SeKA_A23621244.775247formate hydrogenlyase, subunit E
SeKA_A23632184.476783formate hydrogenlyase, subunit D
SeKA_A23643173.196747formate hydrogenlyase, subunit C
SeKA_A23652160.464446formate hydrogenlyase, subunit B
SeKA_A2366119-0.260392hypothetical protein
SeKA_A23671171.672303formate hydrogenlyase regulatory protein
SeKA_A23681153.223313hypothetical protein
SeKA_A23690132.975506hydrogenase nickel insertion protein HypA
SeKA_A23700143.340226hydrogenase isoenzymes nickel incorporation
SeKA_A23710142.704279hydrogenase assembly chaperone HypC/HupF
SeKA_A2372-1142.527476hydrogenase expression/formation protein HypD
SeKA_A23730142.021582hydrogenase expression/formation protein HypE
SeKA_A2374-1140.716166formate hydrogenlyase transcriptional activator
SeKA_A2375-215-1.790432conserved hypothetical protein
SeKA_A2376-216-2.928029periplasmic chelated iron-binding protein YfeA
SeKA_A2377-221-5.934761chelated iron transport system membrane protein
SeKA_A2378-126-7.533266chelated iron transport system membrane protein
SeKA_A2379134-9.032121chelated iron transport system membrane protein
SeKA_A2380239-10.087933secreted effector protein
SeKA_A2381239-9.589535transcriptional regulator
SeKA_A2382340-9.722825transcriptional regulator, AraC family
SeKA_A2383334-5.818046conserved hypothetical protein
SeKA_A2385333-7.018733type III secretion apparatus protein OrgA/MxiK
SeKA_A2386330-8.253380type III secretion apparatus lipoprotein,
SeKA_A2387329-8.790576protein PrgJ
SeKA_A2388230-9.035387type III secretion apparatus needle protein
SeKA_A2389230-9.447363type III secretion apparatus protein PrgH/EprH
SeKA_A2390232-10.827927transcriptional regulator HilD
SeKA_A2391233-10.767488transcriptional regulator HilA
SeKA_A2392231-8.757048invasion protein IagB
SeKA_A2393230-7.927049effector protein SptP
SeKA_A2394124-5.395189secretion chaparone
SeKA_A2395124-5.226743hypothetical protein
SeKA_A2396123-5.755712acyl carrier protein
SeKA_A2397122-5.210535cell invasion protein SipA
SeKA_A2398220-5.313754type III effector protein IpaD/SipD/SspD
SeKA_A2400122-6.001313cell invasion protein SipB
SeKA_A2401-127-6.810691type III secretion low calcium response
SeKA_A2402-126-5.966913surface presentation of antigens protein SpaS
SeKA_A2403-126-5.225252type III secretion apparatus protein
SeKA_A2404-223-3.746001EpaQ
SeKA_A2405-124-4.014624type III secretion apparatus protein, YscR/HrcR
SeKA_A2406-123-4.401605type III secretion apparatus protein, YscQ/HrcQ
SeKA_A2407-124-5.649793antigen presentation protein SpaN
SeKA_A2408-123-6.088004virulence-associated secretory protein
SeKA_A2409-223-5.980282flagellum-specific ATP synthase
SeKA_A2410-126-7.729582surface presentation of antigens protein SpaK
SeKA_A2411-126-8.396258invasion protein InvA
SeKA_A2412-128-8.547876invasion protein InvE
SeKA_A2413029-8.352094type III secretion outer membrane pore,
SeKA_A2414232-9.877656invasion protein
SeKA_A2415331-9.818918cell adherance/invasion protein
SeKA_A2416125-7.245172putative cytoplasmic protein
SeKA_A2417-311-0.887060putative ABC-type transport system
SeKA_A2418-310-0.487145acetyltransferase, gnat family
SeKA_A2421-3100.335811serine/threonine-protein phosphatase 2
SeKA_A2422-2101.785833conserved hypothetical protein
SeKA_A2423-293.066804conserved hypothetical protein
SeKA_A2425-2103.282671DNA mismatch repair protein MutS
SeKA_A2426-2113.251797putative cytoplasmic protein
SeKA_A2427-3113.289625major facilitator family transporter
SeKA_A2428-3124.340738transcriptional regulator, LysR family
SeKA_A2429-2125.036340GntP
SeKA_A2430-1134.501397NAD dependent epimerase/dehydratase family
SeKA_A2431-1144.380735hydroxypyruvate isomerase
SeKA_A2432-1144.281320aldolase class II protein YgbL
SeKA_A24330113.857376YgbK domain protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2347DHBDHDRGNASE841e-21 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 84.3 bits (208), Expect = 1e-21
Identities = 67/257 (26%), Positives = 120/257 (46%), Gaps = 7/257 (2%)

Query: 3 QVAVVIGGGQTLGAFLCRGLAEEGYRVAVVDIQSDKAANVAQEINADFGEGMAYGFGADA 62
++A + G Q +G + R LA +G +A VD +K V + A+ A F AD
Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE--ARHAEAFPADV 66

Query: 63 TSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCARE 122
++ ++ ++ G +D+LV AG+ + I +++ + VN G F +R
Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126

Query: 123 FSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSL 182
S+ M D G I+ + S V + Y+++K V T+ L L+LAEY I + +
Sbjct: 127 VSKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

Query: 183 MLGNLLKSPMFQSL-LPQYATKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPK 241
G+ ++ M SL + + IK +E + +PLK+ D+ + +LF S +
Sbjct: 186 SPGS-TETDMQWSLWADENGAEQVIKGS-LETFKTG-IPLKKLAKPSDIADAVLFLVSGQ 242

Query: 242 ASYCTGQSINVTGGQVM 258
A + T ++ V GG +
Sbjct: 243 AGHITMHNLCVDGGATL 259


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2349ARGREPRESSOR270.044 Bacterial arginine repressor signature.
		>ARGREPRESSOR#Bacterial arginine repressor signature.

Length = 149

Score = 27.1 bits (60), Expect = 0.044
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 1 MKPRQRQAAILEHLQKQGKCSVEEL-----AQYFDTTGTTIRKDL 40
M QR I E + + +EL ++ T T+ +D+
Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDI 45


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2351HTHFIS376e-128 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 376 bits (967), Expect = e-128
Identities = 123/340 (36%), Positives = 181/340 (53%), Gaps = 21/340 (6%)

Query: 187 MIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVYLNCAA 246
++G S AM ++ + + + +DL ++I GE+GTGKELVA+A+H R P V +N AA
Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198

Query: 247 LPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYG 306
+P + ESELFGH KGAFTGA + +G+FE A+ GTLFLDEIG++ + Q +LLRVLQ G
Sbjct: 199 IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG 258

Query: 307 DIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLFVPPLRERGDDVV 366
+ VG +R DVR++AATN+DL++ + G FR DL++RL+V PL +PPLR+R +D+
Sbjct: 259 EYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIP 318

Query: 367 LLAGYFCEQCRLRLGLSRVVLSPDARRHLLNYGWPGNVRELEHAIHRAVVLARATRAGDE 426
L +F +Q + GL +A + + WPGNVRELE+ + R L E
Sbjct: 319 DLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITRE 377

Query: 427 VIL-----EAQHFALS---------------EDVLPAPPAESFLALPTCRNLRESTENFQ 466
+I E + E+ + A ALP +
Sbjct: 378 IIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEME 437

Query: 467 REMIRQALAQNNHNWAASARALETDVANLHRLAKRLGLKD 506
+I AL N +A L + L + + LG+
Sbjct: 438 YPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSV 477


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2371TYPE4SSCAGA270.011 Type IV secretion system CagA exotoxin signature.
		>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature.

Length = 1147

Score = 27.0 bits (59), Expect = 0.011
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 12 IDGNQAKVD--VCGIQRDVDLTLVGSCDENGQPRLGQWVLVHVGFAMSVINEAEARDTLD 69
I GNQ + D G+ D L ++NG+P G W+ + + F + ++ ++ D +
Sbjct: 171 IIGNQIRTDQKFMGV-FDESLKERQEAEKNGEPTGGDWLDIFLSF---IFDKKQSSDVKE 226

Query: 70 ALQN--MFDVEPDVG 82
A+ + V+PD+
Sbjct: 227 AINQEPVPHVQPDIA 241


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2374HTHFIS382e-128 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 382 bits (982), Expect = e-128
Identities = 143/373 (38%), Positives = 207/373 (55%), Gaps = 39/373 (10%)

Query: 345 YQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILG 404
E+ + R + E +L + + ++GRS AM + + + + Q+D T++I G
Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITG 167

Query: 405 ETGTGKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRF 464
E+GTGKEL+ARA+H+ R V +N AA+P L+ES+LFGHE+GAFTGA + GRF
Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRF 227

Query: 465 ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMV 524
E A+ +LFLDE+GDMP++ Q +LLRVLQ+ E+ +G I++DVR++AATN+DLK+ +
Sbjct: 228 EQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSI 287

Query: 525 ADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 584
FR DLYYRLNV P++LPPLR+R EDIP LV+ F + A + G ++ E L +
Sbjct: 288 NQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFV-QQAEKEGLDVKRFDQEALELM 346

Query: 585 SSMEWPGNVRELENVVERAVLLTRGNVLQLS-LPDITAVTPDTSPVATESAKEG------ 637
+ WPGNVRELEN+V R L +V+ + + SP+ +A+ G
Sbjct: 347 KAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQ 406

Query: 638 ----------------------------EDEYQLIIRVLKETNGVVAGPKGAAQRLGLKR 669
E EY LI+ L T G AA LGL R
Sbjct: 407 AVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIK---AADLLGLNR 463

Query: 670 TTLLSRMKRLGID 682
TL +++ LG+
Sbjct: 464 NTLRKKIRELGVS 476


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2376adhesinb321e-112 Adhesin B signature.
		>adhesinb#Adhesin B signature.

Length = 310

Score = 321 bits (824), Expect = e-112
Identities = 89/309 (28%), Positives = 164/309 (53%), Gaps = 14/309 (4%)

Query: 4 LHRLKTLLIAGIVAILAL-------SPAYAKEKFKVITTFTVIADMAKNVAGDAAEVSSI 56
+ + + L++ + + S K V+ T ++IAD+ KN+AGD + SI
Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDKINLHSI 60

Query: 57 TKPGAEIHEYQPTPGDIKRAQGAQLILANGLNLER----WFARFYQHLSGVPE---VVVS 109
G + HEY+P P D+K+ A LI NG+NLE WF + ++ VS
Sbjct: 61 VPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAVS 120

Query: 110 TGVKPMGITEGPYNGKPNPHAWMSAENALIYVDNIRDALVKYDPDNAQIYKQNAERYKAK 169
GV + + GK +PHAW++ EN +IY NI L + DP N + Y++N + Y K
Sbjct: 121 EGVDVIYLEGQSEKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEK 180

Query: 170 IRQMADPLRAELEKIPADQRWLVTSEGAFSYLARDNDMKELYLWPINADQQGTPKQVRKV 229
+ + + + IP +++ +VTSEG F Y ++ ++ Y+W IN +++GTP Q++ +
Sbjct: 181 LSALDKEAKEKFNNIPGEKKMIVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTL 240

Query: 230 IDTIKKHHIPAIFSESTVSDKPARQVARESGAHYGGVLYVDSLSAADGPVPTYLDLLRVT 289
++ ++K +P++F ES+V D+P + V++++ ++ DS++ +Y +++
Sbjct: 241 VEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYSMMKYN 300

Query: 290 TETIVNGIN 298
E I G++
Sbjct: 301 LEKIAEGLS 309


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2382BORPETOXINA310.007 Bordetella pertussis toxin A subunit signature.
		>BORPETOXINA#Bordetella pertussis toxin A subunit signature.

Length = 269

Score = 30.5 bits (68), Expect = 0.007
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 201 IISDLTRKWSQAEVAGKLFMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMGAG 257
++ LT + Q + F+S SS +R ++++YL+ RM +A++ R G G
Sbjct: 66 VLDHLTGRSCQVGSSNSAFVSTSSSRR--------YTEVYLEHRMQEAVEAERAGRG 114


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2386FLGMRINGFLIF437e-07 Flagellar M-ring protein signature.
		>FLGMRINGFLIF#Flagellar M-ring protein signature.

Length = 559

Score = 42.6 bits (100), Expect = 7e-07
Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 10/167 (5%)

Query: 23 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 82
L L + ++A L NI + +G +I V + LP
Sbjct: 53 LFSNLSDQDGGAIVAQLTQMNI-PYRFANG--SGAIEVPADKVHELRLRLAQQGLPKGGA 109

Query: 83 VEIAQMFPADSLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA---GEN 139
V + + S +E+ A+E L ++++T+ V SARVH++ + E
Sbjct: 110 VGFE-LLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQ 168

Query: 140 GRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 186
P V ++ QIS + + ++ A + N+++V
Sbjct: 169 KSPSASVTVTLEPGRALDEG---QISAVVHLVSSAVAGLPPGNVTLV 212


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2390PF07212280.044 Hyaluronoglucosaminidase
		>PF07212#Hyaluronoglucosaminidase

Length = 336

Score = 28.1 bits (62), Expect = 0.044
Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 234 MSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHN 272
+S +K++ +GT+ IY+++ KLLRI N
Sbjct: 241 LSIDIVKKQKGGKGTAAQGIYINSTSGTTGKLLRIRNLG 279


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2393BACYPHPHTASE2972e-97 Salmonella/Yersinia modular tyrosine phosphatase si...
		>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase

signature.
Length = 468

Score = 297 bits (761), Expect = 2e-97
Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 17/212 (8%)

Query: 332 GKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQ--LPPYFRGSYTFG 389
G +A YP LE+H +ML E L VL S ++ ++ +P YFR S T+G
Sbjct: 252 GNTRTIACQYP--LQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYG 309

Query: 390 EVHTNSQKVSSASQGGAV--DQYNMQL-SCGEKRYTIPVLHVKNWPDHQPLPS--TNQLE 444
+ S+ G + D Y + + G+K ++PV+HV NWPD + S T L
Sbjct: 310 SITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALA 369

Query: 445 YLADIVKNSNQNGAPGRSS-----PDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNL-- 497
L D + +N + S K P+IHC GVGRT + A+ + D+ +S L
Sbjct: 370 SLVDQTAETKRNMYESKGSSAVGDDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSV 429

Query: 498 EQVRADFRDSRNNRMLEDASQF-VQLKAMQAQ 528
E + + R RN M++ Q V +K + Q
Sbjct: 430 EDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQ 461


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2394PF05932425e-08 Tir chaperone protein (CesT)
		>PF05932#Tir chaperone protein (CesT)

Length = 127

Score = 42.1 bits (99), Expect = 5e-08
Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 2 QAHQDIIANIGEKLGL-PLTFDDNNQCLLLLDSDIFTSIEAK--DDIWLLNGMIIPLSPV 58
++ ++ + L + PL FDD+ C +++D+ ++ + LL G++ P
Sbjct: 4 LFYKTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLEPH--- 60

Query: 59 CGDSIWRQIMVINGELAANNEGTLAYIDAAETLLFIHAI-TDLTNTYHIISQLESFVNQQ 117
D + ++ N L + + +I + + + ++ +
Sbjct: 61 -KDIPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWM 119

Query: 118 EALKNILQ 125
+ Q
Sbjct: 120 RGWREASQ 127


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2400BACINVASINB8390.0 Salmonella/Shigella invasin protein B signature.
		>BACINVASINB#Salmonella/Shigella invasin protein B signature.

Length = 593

Score = 839 bits (2168), Expect = 0.0
Identities = 591/593 (99%), Positives = 591/593 (99%)

Query: 1 MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGE 60
MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGE
Sbjct: 1 MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGE 60

Query: 61 SAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE 120
SAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE
Sbjct: 61 SAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE 120

Query: 121 MGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAAAKKLTQAQNKLQSLDPADPG 180
MGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAA KKLTQAQNKLQSLDPADPG
Sbjct: 121 MGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG 180

Query: 181 YAQAEAAVEQAGKEATEAKEALDKATDAAVKAGTDAKAKAEKADNILTKFQGTANAASQN 240
YAQAEAAVEQAGKEATEAKEALDKATDA VKAGTDAKAKAEKADNILTKFQGTANAASQN
Sbjct: 181 YAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTANAASQN 240

Query: 241 QVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEF 300
QVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEF
Sbjct: 241 QVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEF 300

Query: 301 QEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAA 360
QEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAA
Sbjct: 301 QEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAA 360

Query: 361 TGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMV 420
TGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMV
Sbjct: 361 TGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMV 420

Query: 421 AVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLG 480
AVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLG
Sbjct: 421 AVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLG 480

Query: 481 NVGSKMGLQTNALSKELVGNTLNKVALGMEVTNTAAQSAGGVAEGVFIKNASEALADFML 540
NVGSKMGLQTNALSKELVGNTLNKVALGMEVTNTAAQSAGGVAEGVFIKNASEALADFML
Sbjct: 481 NVGSKMGLQTNALSKELVGNTLNKVALGMEVTNTAAQSAGGVAEGVFIKNASEALADFML 540

Query: 541 ARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQSRA 593
ARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQSRA
Sbjct: 541 ARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQSRA 593


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2401SYCDCHAPRONE1282e-40 Gram-negative bacterial type III secretion SycD cha...
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

chaperone signature.
Length = 168

Score = 128 bits (322), Expect = 2e-40
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 4 QNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFL 63
Q + + + G T+ ++ I D ++ LY+ A+ Y G+ ++A F+ L
Sbjct: 3 QETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQAL 62

Query: 64 CIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123
C+ D Y+ + +GL A Q Q+ A Y+ + + R F +C L + A+
Sbjct: 63 CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAE 122

Query: 124 ARQCF----ELVNERTEDESLRAKALVYLEALKTAETEQH 159
A EL+ ++TE + L + LEA+K + +H
Sbjct: 123 AESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEMEH 162


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2402TYPE3IMSPROT340e-118 Type III secretion system inner membrane S protein ...
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

family signature.
Length = 354

Score = 340 bits (875), Expect = e-118
Identities = 120/360 (33%), Positives = 205/360 (56%), Gaps = 19/360 (5%)

Query: 1 MSSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGSFN-EFMGIIKIII 59
MS KTE+PT K++ D+ KKGQ KSK+++ L + A L+ + E + +I
Sbjct: 1 MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIP 60

Query: 60 ADNFDQSMADYSLAVFGIGLKYLIPFMLLCL---VCSALPAL----LQAGFVLATEALKP 112
+QS +S A+ + L+ F LC +AL A+ +Q GF+++ EA+KP
Sbjct: 61 ---AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKP 117

Query: 113 NLSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIA 172
++ +NP+EGAK++FS++++ + +K++L + V+ +I+ W K + + L GI
Sbjct: 118 DIKKINPIEGAKRIFSIKSLVEFLKSILKV---VLLSILIWIIIKGNLVTLLQLPTCGIE 174

Query: 173 VIWRELLLALVLTCLACA---LIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEV 229
I L L + C +++ + D EY+ +K++KM K+E+KRE KE EG+PE+
Sbjct: 175 CITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEI 234

Query: 230 KSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALA 289
KSKRR+ H EI S ++ +++ S ++VANPTHI IGI +K P+P+++ T+ +
Sbjct: 235 KSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQT 294

Query: 290 VRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLE--EVENAGKDVI 347
VR AE+ GVP++ I LAR+L+ + E+I+ +L WLE +E +++
Sbjct: 295 VRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML 354


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2403TYPE3IMRPROT1883e-61 Type III secretion system inner membrane R protein ...
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

family signature.
Length = 261

Score = 188 bits (478), Expect = 3e-61
Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 4/237 (1%)

Query: 12 LVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVAMI 71
+ RV + P L+ + + + +++ + P P S +
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71

Query: 72 PLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNM 131
L +Q+ +G+ LG + + F + G II Q G + ++ +DPA+ ++ +A ++M
Sbjct: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131

Query: 132 FAAVVYLQNGGLVTMVDVLNKSYQLCDPMNEC--TPSLPPLLTFINQVAQNALVLASPVV 189
A +++L G + ++ +L ++ E + + L + + N L+LA P++
Sbjct: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191

Query: 190 LVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFS--PVLPDNVLRLSF 244
+LL + LGLL+R APQ++ F I + + + +M +++ F
Sbjct: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2404TYPE3IMQPROT894e-27 Type III secretion system inner membrane Q protein ...
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

family signature.
Length = 86

Score = 88.7 bits (220), Expect = 4e-27
Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1 MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL 60
MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct: 1 MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL 60

Query: 61 FLLSGWYGEVLLSYGRQVIFLALAKG 86
FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct: 61 FLLSGWYGEVLLSYGRQVIFLALAKG 86


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2405TYPE3IMPPROT303e-107 Type III secretion system inner membrane P protein ...
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein

family signature.
Length = 224

Score = 303 bits (777), Expect = e-107
Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1 MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60
MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS
Sbjct: 1 MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60

Query: 61 MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120
MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL
Sbjct: 61 MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120

Query: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180
KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL
Sbjct: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180

Query: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIAT 224
LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIAT
Sbjct: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIAT 224


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2406TYPE3OMOPROT5390.0 Type III secretion system outer membrane O protein ...
		>TYPE3OMOPROT#Type III secretion system outer membrane O protein

family signature.
Length = 303

Score = 539 bits (1389), Expect = 0.0
Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1 MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWL 60
MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWL
Sbjct: 1 MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWL 60

Query: 61 EHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLL 120
EHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLL
Sbjct: 61 EHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLL 120

Query: 121 HIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTS 180
HIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTS
Sbjct: 121 HIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTS 180

Query: 181 RAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYR 240
RAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYR
Sbjct: 181 RAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYR 240

Query: 241 KNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESG 300
KNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESG
Sbjct: 241 KNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESG 300

Query: 301 NGE 303
NGE
Sbjct: 301 NGE 303


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2407SSPANPROTEIN5940.0 Salmonella invasion protein InvJ signature.
		>SSPANPROTEIN#Salmonella invasion protein InvJ signature.

Length = 336

Score = 594 bits (1533), Expect = 0.0
Identities = 330/336 (98%), Positives = 333/336 (99%)

Query: 1 MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETAL 60
MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETAL
Sbjct: 1 MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETAL 60

Query: 61 PVLLAAWRHGAPAKSEHHNGNVSGLHHNGKGELRIAEKLLKVTAEKSVGLISAEAKVDKS 120
P+LLAAWRHGAPAKSEHHNGNVSGLHHNGK ELRIAEKLLKVTAEKSVGLISAEAKVDKS
Sbjct: 61 PLLLAAWRHGAPAKSEHHNGNVSGLHHNGKSELRIAEKLLKVTAEKSVGLISAEAKVDKS 120

Query: 121 AALLSPKNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVR 180
AALLS KNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVR
Sbjct: 121 AALLSSKNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVR 180

Query: 181 KEGAPLARDVAPAQMAAANTGKPDDKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMPSA 240
KEGAPLARDVAPA+MAAANTGKP+DKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMP A
Sbjct: 181 KEGAPLARDVAPARMAAANTGKPEDKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMPLA 240

Query: 241 AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLH 300
AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLH
Sbjct: 241 AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLH 300

Query: 301 DQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA 336
DQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA
Sbjct: 301 DQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA 336


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2408SSPAMPROTEIN1672e-56 Salmonella surface presentation of antigen gene typ...
		>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M

signature.
Length = 147

Score = 167 bits (423), Expect = 2e-56
Identities = 141/147 (95%), Positives = 143/147 (97%)

Query: 1 MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRGLQAEEEAILEQIAGLKLLLDTLRAEN 60
MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDR LQ EEEAI+EQIAGLKLLLDTLRAEN
Sbjct: 1 MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRRLQVEEEAIVEQIAGLKLLLDTLRAEN 60

Query: 61 RQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQKKSKYWLRKEGNY 120
RQLSREEIY LLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQ+KSKYWLRKEGNY
Sbjct: 61 RQLSREEIYALLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQEKSKYWLRKEGNY 120

Query: 121 QRWIIRQKRHYIQREIQQEEAESEEII 147
QRWIIRQKR YIQREIQQEEAESEEII
Sbjct: 121 QRWIIRQKRLYIQREIQQEEAESEEII 147


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2410SSPAKPROTEIN2063e-72 Invasion protein B family signature.
		>SSPAKPROTEIN#Invasion protein B family signature.

Length = 133

Score = 206 bits (525), Expect = 3e-72
Identities = 43/133 (32%), Positives = 76/133 (57%)

Query: 1 MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGA 60
M ++++ +LVR +L GC PS+I +DSHS I + L ++P+I I++ ++ V +WA A
Sbjct: 1 MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAINIALVNEQVMLWANFDA 60

Query: 61 DSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKALVHPDFLSDGEKFSTALN 120
S V LQ AY IL ++ ++ + L + L L+ ++ D++ DG F+ L+
Sbjct: 61 PSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILH 120

Query: 121 GFYNYLEVFSRSL 133
FY +E+ + L
Sbjct: 121 EFYQRMEILNGVL 133


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2412INVEPROTEIN6040.0 Salmonella/Shigella invasion protein E (InvE) signat...
		>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE)

signature.
Length = 372

Score = 604 bits (1558), Expect = 0.0
Identities = 371/372 (99%), Positives = 371/372 (99%)

Query: 1 MIPGSTSGISFSRILSRQTSHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSA 60
MIPGSTSGISFSRILSRQ SHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSA
Sbjct: 1 MIPGSTSGISFSRILSRQASHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSA 60

Query: 61 ALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFP 120
ALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFP
Sbjct: 61 ALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFP 120

Query: 121 DPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLS 180
DPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLS
Sbjct: 121 DPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLS 180

Query: 181 LKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSR 240
LKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSR
Sbjct: 181 LKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSR 240

Query: 241 LEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSL 300
LEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSL
Sbjct: 241 LEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSL 300

Query: 301 LADIIGLNALLLSHKEHASFLQIFYQVCKAIPSSLFYEEYWQEELLMALRSMTDIAYKHE 360
LADIIGLNALLLSHKEHASFLQIFYQVCKAIPSSLFYEEYWQEELLMALRSMTDIAYKHE
Sbjct: 301 LADIIGLNALLLSHKEHASFLQIFYQVCKAIPSSLFYEEYWQEELLMALRSMTDIAYKHE 360

Query: 361 MAEQRRTIEKLS 372
MAEQRRTIEKLS
Sbjct: 361 MAEQRRTIEKLS 372


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2413TYPE3OMGPROT5320.0 Type III secretion system outer membrane G protein ...
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

family signature.
Length = 607

Score = 532 bits (1371), Expect = 0.0
Identities = 154/491 (31%), Positives = 250/491 (50%), Gaps = 50/491 (10%)

Query: 1 MALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIYDASEMR 60
V+VS K++G FE +P L+ ++ L+WY+DG +YI+ SE+
Sbjct: 52 FGANYDATVVVSD-KINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVA 110

Query: 61 NAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMMDK 120
+ ++ L+ E L+RSG++ + R D YVSGPP Y+++V A +++
Sbjct: 111 SRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQ 170

Query: 121 QND--GIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGEEQPLGNIV 178
Q + G I + L DRT + RD ++ PG+AT ++R+L +
Sbjct: 171 QTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVD 230

Query: 179 SSEPPAMPAFSANGEKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQ 238
+ P Q A + +A A ++ A P N+++V+ + E+
Sbjct: 231 NQRIP-----------------------QAATRASAQA---RVEADPSLNAIIVRDSPER 264

Query: 239 VHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSI-----------TIGDKL 287
+ + L+ ALD +E++L IVD+N L LG W I T GD+
Sbjct: 265 MPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQS 324

Query: 288 GVSLNQSSISTLDG---SRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344
++ N + S +D +A VN LE + A VVSRP LLTQEN A+ D++ T+Y K
Sbjct: 325 NIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVK 384

Query: 345 LIGERNVALEHVTYGTMIRVLPRFSADG---QIEMSLDIEDGNDKTPQSDTTTSVDALPE 401
+ G+ L+ +TYGTM+R+ PR G +I ++L IEDGN Q ++ ++ +P
Sbjct: 385 VTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGN----QKPNSSGIEGIPT 440

Query: 402 VGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVVR 461
+ RT++ T+ARV HG+SL++GG RD + + +P LG +P IG+LFR S+ VR
Sbjct: 441 ISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVR 500

Query: 462 VFMIEPKEIVD 472
+F+IEP+ I +
Sbjct: 501 LFIIEPRIIDE 511


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2427TCRTETB825e-19 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 81.8 bits (202), Expect = 5e-19
Identities = 67/387 (17%), Positives = 151/387 (39%), Gaps = 48/387 (12%)

Query: 16 FLDLINLFIASVAFPAMSVELHTSISALAWVSNGYIAGLTLIVPFSAFLSRYLGARRLII 75
F ++N + +V+ P ++ + + ++ WV+ ++ ++ LS LG +RL++
Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

Query: 76 FSLILFSIAAAAAGFADSLHS-LVFWRIVQGAGGGLLIPVGQALTWQQFKPHERAGVSSV 134
F +I+ + S S L+ R +QGAG + + + R +
Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143

Query: 135 VMMVALLAPACSPAIGGLLVETCGWRWIFF------------------------------ 164
+ + + PAIGG++ W ++
Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKG 203

Query: 165 -ATLPVAVLTLLL---AYRWLNVASTTMA------SARLLHLPLLTDRLLRFAMIVYLCV 214
+ V ++ +L +Y + + ++ R + P + L + + +
Sbjct: 204 IILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVL 263

Query: 215 PGMFIGISVVGM-----FYLQNVAQLSPAAAGS-LMLPWSIASFVAIMLTGRYFNRLGPR 268
G I +V G + +++V QLS A GS ++ P +++ + + G +R GP
Sbjct: 264 CGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPL 323

Query: 269 PLIIVGCLLQAAGILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDM 328
++ +G + L + + TS + ++I ++G G S + + ++ +++
Sbjct: 324 YVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTVISTIVSSSLKQQEA 382

Query: 329 PDASALWNLNRQLSFFLGAALLTLLLN 355
+L N LS G A++ LL+
Sbjct: 383 GAGMSLLNFTSFLSEGTGIAIVGGLLS 409


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2430NUCEPIMERASE849e-21 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 84.4 bits (209), Expect = 9e-21
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 31/217 (14%)

Query: 1 MQIIITGGGGFLGQKLASALLNSSL------AFNELLLVDLKMPARLS--DSPRLRCLEA 52
M+ ++TG GF+G ++ LL + N+ V LK ARL P + +
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQ-ARLELLAQPGFQFHKI 59

Query: 53 DLT-QPGVLENVITANTSVVYHLAA-------IVSSHAEDDFDLGWKVNLDLTRQLLEAC 104
DL + G+ + + + V+ + + HA D NL +LE C
Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD------SNLTGFLNILEGC 113

Query: 105 RRQPQKIRFVFSSSLAVYGG--TLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKGYV 162
R + +++SS +VYG +P D+ P S Y A K A EL+ + Y+ +
Sbjct: 114 RHNKIQ-HLLYASSSSVYGLNRKMPFSTDDSVD-HPVSLYAATKKANELMAHTYSHLYGL 171

Query: 163 DGLALRLPTICVRPGKPNRAASSFVSAIIREPLQGET 199
LR T+ G+P+ A F A+ L+G++
Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAM----LEGKS 204


38SeKA_A2443SeKA_A2461Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A24432172.413410protein-L-isoaspartate O-methyltransferase
SeKA_A24441181.8205365'/3'-nucleotidase SurE
SeKA_A24452171.593369tRNA pseudouridine synthase D
SeKA_A2446-1122.0680102C-methyl-D-erythritol 2,4-cyclodiphosphate
SeKA_A2447-2111.4748702-C-methyl-D-erythritol 4-phosphate
SeKA_A2448-1110.433606cell division protein FtsB
SeKA_A24490120.539423YgbE
SeKA_A24501120.872629adenylylsulfate kinase
SeKA_A24511130.256315sulfate adenylyltransferase, large subunit
SeKA_A24523140.098313sulfate adenylyltransferase, subunit 2
SeKA_A24530190.752905alkaline phosphatase isozyme conversion protein
SeKA_A2454-2182.542992conserved hypothetical protein
SeKA_A2455-2141.634339conserved hypothetical protein
SeKA_A24560140.651113crispr-associated protein Cas2
SeKA_A24571131.186377crispr-associated protein Cas1
SeKA_A2458214-0.561999crispr-associated protein, Cse3 family
SeKA_A2459114-1.321964crispr-associated protein Cas5, ecoli subtype
SeKA_A2460118-3.922671crispr-associated protein, Cse4 family
SeKA_A2461117-3.673421crispr-associated protein, Cse2 family
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2451TCRTETOQM631e-12 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 63.3 bits (154), Expect = 1e-12
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 20/138 (14%)

Query: 36 VDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITI 95
VD GK+TL LL+++ I +L S+ + R D ER++GITI
Sbjct: 12 VDAGKTTLTESLLYNSGAI--TELGSVDKGTTR-------------TDNTLLERQRGITI 56

Query: 96 DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIS 155
F E K I DTPGH + + S D AILLI A+ GV QTR
Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTR--ILFH 114

Query: 156 TL--LGIKHLVVAINKMD 171
L +GI + INK+D
Sbjct: 115 ALRKMGIPTIFF-INKID 131


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2460BONTOXILYSIN300.014 Bontoxilysin signature.
		>BONTOXILYSIN#Bontoxilysin signature.

Length = 1196

Score = 30.3 bits (68), Expect = 0.014
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 298 YEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLD 348
Y + TD +N++ + ++ + +KVY Q+ D V+ E LD
Sbjct: 1077 YLSLKNTDGINISSVKFKLINIDESKVYVQKWDECIICVL---DGTEKYLD 1124


39SeKA_A2477SeKA_A2482Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A24772131.034050putative fimbrial subunit
SeKA_A2478213-0.756302fimbrial usher protein
SeKA_A2479530-6.354328chaperone protein PapD
SeKA_A2480737-7.740908fimbrial subunit
SeKA_A2481122-4.788692fimbrial subunit
SeKA_A2482-119-3.782100fimbrial subunit
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2478PF005777020.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 702 bits (1813), Expect = 0.0
Identities = 216/867 (24%), Positives = 372/867 (42%), Gaps = 70/867 (8%)

Query: 2 LLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEF 61
+ +P S++ ++ FN FL + ++++F + PG Y + I +N +
Sbjct: 36 FAAQAPLSSA--ELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATR- 92

Query: 62 PVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSL-KGMDFQA 120
V + QG C + +G+ + + + C+ S+ Q
Sbjct: 93 DVTFN-TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLL--ADDACVPLTSMIHDATAQL 149

Query: 121 DLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSIS 180
D+G L + +PQA+M + PP WD GI +L+YN + ++ G+
Sbjct: 150 DVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNS-HYAY 208

Query: 181 GNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGES 240
N G N+GAWRLR + SY+ D + + R + L ++LTLG+
Sbjct: 209 LNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKN--KWQHINTWLERDIIPLRSRLTLGDG 266

Query: 241 YLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVP 300
Y Q D+FD N+ GA + SDD MLP RG+AP I GIAR A+V + G +Y + VP
Sbjct: 267 YTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVP 326

Query: 301 AGPFRIQDLNQ-SVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDW 359
GPF I D+ SG L VT++E +G TQ F V +SVP L R G RY + G +
Sbjct: 327 PGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSG 386

Query: 360 DHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIA 419
+ F + G+ GW++YGG Y+A G GK++G +GA++VD+T + +
Sbjct: 387 NAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANS 446

Query: 420 HMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKT--YH 477
+P D G S R Y++ +E + + GYR+S + + +D ++ Y+
Sbjct: 447 TLPDD-----SQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYN 501

Query: 478 HLNA-----------------GHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQS- 519
+++ + +T Q + Y S S T+W + +
Sbjct: 502 IETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTS-TLYLSGSHQTYWGTSNVDE 560

Query: 520 NYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWG------------ND 567
+ L+ F+ + + S + ++ + +D + +++++P+ +
Sbjct: 561 QFQAGLNTAFEDIN---WTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 617

Query: 568 SISYNGT-FNGSQHRNQLGYSGH--SQNGDNWQLHVG-----QDEQGAQADGYYSHQGAL 619
S SY+ + + N G G N ++ + G G+ +++G
Sbjct: 618 SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGY 677

Query: 620 TDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGN 679
+ ++ + + + L + GG+ G L + T +LV G D V N
Sbjct: 678 GNANIGYSHSDD-IKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKV-EN 733

Query: 680 GSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVV 739
+ T+ G AV+ Y + +D N L + + +V + T GAI F
Sbjct: 734 QTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKAR 793

Query: 740 SGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFW--DGA 797
G K++ + PFGA V +E Q G+VAD+G +L+G+ ++V W +
Sbjct: 794 VGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEEN 852

Query: 798 AQCEA--SLPPTFTPELLANALLLPCK 822
A C A LPP +LL L C+
Sbjct: 853 AHCVANYQLPPESQQQLL-TQLSAECR 878


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2480FIMBRIALPAPF349e-05 Escherichia coli: P pili tip fibrillum papF protein...
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein

signature.
Length = 167

Score = 34.3 bits (78), Expect = 9e-05
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 31 PPCTVGGAS---VEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGE 87
PPCT+ V+FG++ V ++ S++C + S L +++ G T +
Sbjct: 32 PPCTINNGQNIVVDFGNINPEHVDNSRGEVTKNISISCPYK-SGSLWIKVTGNTMGVGQN 90

Query: 88 QVLQTSVQGLGIRIQQ-------------AGNKQLVPVGI-TDWLNFTLSGSNGPELEAV 133
VL T++ GI + Q +GN V G+ T FT + +V
Sbjct: 91 NVLATNITHFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFT--------SV 142

Query: 134 PVKEPTTQLAGGDFNASATLVVDY 157
P + + L GGDF +A++ + Y
Sbjct: 143 PFRNGSGILNGGDFRTTASMSMIY 166


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2481FIMBRIALPAPF422e-07 Escherichia coli: P pili tip fibrillum papF protein...
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein

signature.
Length = 167

Score = 41.6 bits (97), Expect = 2e-07
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)

Query: 5 LILTLLITQFAC-AD-NLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIP 62
L ++LL+T A AD + G + PP CTINNG+ + V FG++ +++D N E+
Sbjct: 6 LFISLLLTSVAVLADVQINIRGNVYIPP-CTINNGQNIVVDFGNINPEHVD--NSRGEVT 62

Query: 63 WTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGT------ 116
++ ++ +L ++ T N L TN+ GI L Q + P T
Sbjct: 63 KNISISCPYKSGSLWIKVTG-NTMGVGQNNVLATNITHFGIALYQGKGMSTPLTLGNGSG 121

Query: 117 -----SLTIDES-SLPTLKAVPVKQPGKEPAEGDFEAFATLQVDY 155
+ +D + S T +VP + GDF A++ + Y
Sbjct: 122 NGYRVTAGLDTARSTFTFTSVPFRNGSGILNGGDFRTTASMSMIY 166


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2482INTIMIN310.003 Intimin signature.
		>INTIMIN#Intimin signature.

Length = 939

Score = 30.8 bits (69), Expect = 0.003
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 23 TLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDC 82
L + + +SG A ++ + + + + +D +G ++ L++
Sbjct: 491 ALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN-NVLLTI--- 546

Query: 83 KTALANGVLVAFQGVEDSTLPGLLALEPSSEASGFAIGVE----TVAQQPVSINATEGTA 138
T L+NG +V GV D T A +EA + V+ A PVS N GTA
Sbjct: 547 -TVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTA 605


40SeKA_A2562SeKA_A2573Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2562324-4.726921inner membrane transport protein YqeG
SeKA_A2563525-2.379100YohL
SeKA_A25646251.677015nickel/cobalt efflux system RcnA
SeKA_A25657271.558167conserved hypothetical protein
SeKA_A25667250.598396conserved hypothetical protein
SeKA_A25677240.236859conserved hypothetical protein
SeKA_A25686272.107975pili assembly chaperone protein
SeKA_A25697251.051944fimbrial usher protein
SeKA_A2570631-6.621829fimbrial protein
SeKA_A2571635-8.978263YfdX protein
SeKA_A2572530-6.578641outer membrane protein
SeKA_A2573123-4.577613conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2569PF005776310.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 631 bits (1629), Expect = 0.0
Identities = 228/856 (26%), Positives = 382/856 (44%), Gaps = 66/856 (7%)

Query: 19 SQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGR 78
S FN L + DL+ F + PG Y +DI+LN+ + + V
Sbjct: 44 SAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRD-VTFNTGDSE 102

Query: 79 DAAVICVTIDMVAMLGLKDKIIHGLKPVTGIPNGQCLELRSA--DSQVRYSAENQRLTFI 136
V C+T +A +GL + + + + C+ L S D+ + QRL
Sbjct: 103 QGIVPCLTRAQLASMGLNTA---SVSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLT 159

Query: 137 IPQAWMRYQDPDWVPPSRWSDGVTAGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGA 196
IPQA+M + ++PP W G+ AGLL+Y+ N + G S L +G N+GA
Sbjct: 160 IPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGA 219

Query: 197 WRLRSDYQYSRFDS-GRGASQSDFYLPQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFA 255
WRLR + +S S S++ + T+L R + LRS+LTLG Y IFD F
Sbjct: 220 WRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFR 279

Query: 256 GLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQ-N 314
G LASD+ MLP S +G+AP I GIA AQVT+ QNG +Y + V PGPF + D+
Sbjct: 280 GAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAG 339

Query: 315 ISGNLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFL 374
SG+L V+++E+DGS + + V +SVP + R+G RY + AG G N P F
Sbjct: 340 NSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSG---NAQQEKPRFF 396

Query: 375 LGEATWGAFNNTSLYGGLIASTGDYQSAALGIGQNMGLLGALSADVTRSDARLPHGKKQS 434
G ++YGG + Y++ GIG+NMG LGALS D+T++++ LP +
Sbjct: 397 QSTLLHGLPAGWTIYGGTQLA-DRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHD 455

Query: 435 GYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGGD------------- 481
G S R Y K+ +++G+ + VGYR+S + + + R
Sbjct: 456 GQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKF 515

Query: 482 ------AWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQ-SNNNYMLSFNKVFSLGD 534
A++++ +T +Q + + LS S YW + + N F
Sbjct: 516 TDYYNLAYNKRGKLQLTVTQQLG-RTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAF---- 570

Query: 535 LQGLSASVSFARNQYTGG-GSQNQVYATISIPWGDSR-----------QVSYSVQKDNRG 582
+ ++ ++S++ + G + ++IP+ SYS+ D G
Sbjct: 571 -EDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNG 629

Query: 583 GLQQTVNYSD--FHNPDTTWNISAGHNRYDTGSN-SSFSGSVQSRLPWGQAAADATLQPG 639
+ + + ++++ G+ G++ S+ ++ R +G A +
Sbjct: 630 RMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDD 689

Query: 640 QYRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGV-TNRFGVGV 698
+ L G V A A+G Q + N+ +++ V +GV T+ G V
Sbjct: 690 -IKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKVENQTGVRTDWRGYAV 746

Query: 699 VSAGSSYRRSDISVDVAALPEDVDVNSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLAD 758
+ + YR + +++D L ++VD++++V + V T GA+ + A G ++L + +
Sbjct: 747 LPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLT-HN 805

Query: 759 GASPPFGALVVSGKTGRTAGMVGDDGLAYLTGLSGEDRRTLNVSW--DGRVQCRLTLPET 816
PFGA+V S +++G+V D+G YL+G+ + V W + C
Sbjct: 806 NKPLPFGAMVTSES-SQSSGIVADNGQVYLSGM--PLAGKVQVKWGEEENAHCVANYQLP 862

Query: 817 VTLSRGPL---LLPCR 829
+ L CR
Sbjct: 863 PESQQQLLTQLSAECR 878


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2572ENTEROVIROMP961e-27 Enterobacterial virulence outer membrane protein si...
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein

signature.
Length = 171

Score = 96.1 bits (239), Expect = 1e-27
Identities = 53/183 (28%), Positives = 77/183 (42%), Gaps = 17/183 (9%)

Query: 1 MNKMLLAGSAGIVLLSAAASPVWADDNASTFSLGYAQSH-TNHAGTLRGVRLANNYEMSP 59
M K+ SA +L+ A A ST + GYAQS + G L YE
Sbjct: 1 MKKIACL-SALAAVLAFTAGTSVAA--TSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDN 57

Query: 60 D-WGLTTSFAWLNGSQRYSDESSNGRVTTRYYSLLAGPSWKINNQLSLYSQVGPVLLHQR 118
G+ SF + S SS +YY + AGP+++IN+ S+Y VG +
Sbjct: 58 SPLGVIGSFTYTEKS---RTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQ 114

Query: 119 DH---GINESDSKVGYGYSAGVAYTPVSNVAITLGYEGADFDATHNSGSLNSNGFNLGVG 175
S G+ Y AG+ + P+ NVA+ YE + S++ + GVG
Sbjct: 115 TTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQS------RIRSVDVGTWIAGVG 168

Query: 176 YRF 178
YRF
Sbjct: 169 YRF 171


41SeKA_A2589SeKA_A2602Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2589014-3.257008TPR repeat protein
SeKA_A2590-113-0.404831tRNA-modifying protein YgfZ
SeKA_A2591-114-0.873655hemolysin-3
SeKA_A2592-115-0.284599protein YqfB
SeKA_A2593-1140.6559816-phospho-beta-glucosidase BglA
SeKA_A2594-2121.212460putative outer membrane protein
SeKA_A25950163.668807glycine dehydrogenase
SeKA_A2596-1143.706289glycine cleavage system H protein
SeKA_A2597-1133.567886glycine cleavage system T protein
SeKA_A26000143.527633protein VisC
SeKA_A2601-1153.527172hypothetical protein
SeKA_A26020153.1197562-polyprenyl-6-methoxyphenol 4-hydroxylase
42SeKA_A2674SeKA_A2700Y        NYGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2674222-2.010530hypothetical protein
SeKA_A2675021-4.744570YqgA
SeKA_A2679931-9.600179*hypothetical protein
SeKA_A26801039-12.932753hcp
SeKA_A26811445-17.692091conserved hypothetical protein
SeKA_A26831448-20.003158paar motif protein
SeKA_A26841451-21.262231colicin-E7 immunity protein
SeKA_A26851151-21.896820colicin-E7 immunity protein
SeKA_A2686646-18.316272conserved hypothetical protein
SeKA_A2687540-15.537425conserved hypothetical protein
SeKA_A2688430-9.105041conserved hypothetical protein
SeKA_A2689429-7.101223putative membrane protein
SeKA_A2690428-5.400088hypothetical protein
SeKA_A2691225-4.402335LysR-family transcriptional regulator
SeKA_A2692123-3.160449putative cytoplasmic protein
SeKA_A2693122-2.856232transpoter
SeKA_A2694021-3.309983hypothetical protein
SeKA_A2695023-4.306271putative cytoplasmic protein
SeKA_A2696023-4.758141tyramine oxidase
SeKA_A2697229-6.012798phenylacetaldehyde dehydrogenase
SeKA_A2698334-8.981529putative cytoplasmic protein
SeKA_A2699120-6.372880type VI secretion system effector, Hcp1 family
SeKA_A2700017-5.251589conserved hypothetical protein
43SeKA_A2713SeKA_A2726Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A27132141.474121periplasmic binding protein
SeKA_A27142191.161570hydrogenase assembly chaperone HypC/HupF
SeKA_A27152191.075988hydrogenase nickel insertion protein HypA
SeKA_A27162200.942110hydrogenase-2 component protein
SeKA_A27172210.257043hydrogenase expression/formation protein
SeKA_A2718221-0.168939hydrogenase-2, large subunit
SeKA_A2719218-1.377944Ni/Fe-hydrogenase 2 b-type cytochrome subunit
SeKA_A2720118-2.913701hydrogenase-2 electron transfer subunit
SeKA_A2721-122-5.016572hydrogenase-2 small chain
SeKA_A2722024-8.018768conserved hypothetical protein
SeKA_A2723017-4.372905conserved hypothetical protein
SeKA_A2726-115-3.938795conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2713FERRIBNDNGPP320.003 Ferrichrome-binding periplasmic protein signature.
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.

Length = 296

Score = 31.8 bits (72), Expect = 0.003
Identities = 46/287 (16%), Positives = 101/287 (35%), Gaps = 37/287 (12%)

Query: 19 LMSQAARTFTDQLGRQVTVPDTVDRVVVLQHQTLNLLVQMNATDKIVGVMANWKQQLGDG 78
L + A Q+ +R+V L+ + LL+ + V N++
Sbjct: 13 LTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRL----- 67

Query: 79 YVRLAPELAQKASLGDLTHVDPEKLVALRPQVAFVT-NYAPQ-EMIDKISRLGIPVVAI- 135
+V P +G T + E L ++P + Y P EM+ +I+ +
Sbjct: 68 WVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDG 127

Query: 136 SLRHDIAGEQAKMNPTLADEEQAYNRGLREGITLIGDIVNKPQEAKALIEAMDKGRKMVS 195
+A R+ +T + D++N A+ + + + S
Sbjct: 128 KQPLAMA---------------------RKSLTEMADLLNLQSAAETHLAQYE--DFIRS 164

Query: 196 DRLQSVPENER---VRAYMANPELTTYGSGKYTGLMMAHAGALNV--AASSVKGFKQVTM 250
+ + V R + + + +G ++ G N ++ G V++
Sbjct: 165 MKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSI 224

Query: 251 EQVIAW-DPQVIFVQNRYPKVVNEILHNPQWQVIDAVKHHRVYLMPD 296
+++ A+ D V+ + K ++ ++ P WQ + V+ R +P
Sbjct: 225 DRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPA 271


44SeKA_A2760SeKA_A2787Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2760218-1.889264conserved hypothetical protein
SeKA_A2761225-7.876551hypothetical protein
SeKA_A2762225-7.953055quaternary ammonium compound-resistance protein
SeKA_A2763125-8.022110outer membrane lipoprotein blc
SeKA_A2764125-7.619595beta-lactamase
SeKA_A2765-221-7.541589hypothetical protein
SeKA_A2766-119-5.306280TnpA
SeKA_A2767-213-0.537652cyclic 3',5'-adenosine monophosphate
SeKA_A2768-3110.307981conserved hypothetical protein
SeKA_A2769-3100.908928hydrolase, NUDIX family
SeKA_A2770-2110.629427outer membrane protein TolC
SeKA_A2771-211-0.527036protein YgiB
SeKA_A2772-112-2.148464glutathionylspermidine synthase
SeKA_A2773014-2.664244extradiol ring-cleavage dioxygenase, class III
SeKA_A2774-115-3.832350zinc transporter ZupT
SeKA_A2775016-4.138852conserved hypothetical protein
SeKA_A2776-115-3.691801arylsulfate sulfotransferase
SeKA_A2778-216-3.496019disulfide isomerase
SeKA_A2777-216-1.681018hypothetical protein
SeKA_A2779111-0.288160disulfide bond formation protein B
SeKA_A27803121.4422683,4-dihydroxy-2-butanone 4-phosphate synthase
SeKA_A27822112.297015conserved hypothetical protein
SeKA_A27831102.332895conserved domain protein
SeKA_A2784092.132212inner membrane protein YqiJ
SeKA_A2785092.857993inner membrane protein YqiK
SeKA_A2787-1123.067196bifunctional protein HldE
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2763BCTLIPOCALIN300e-108 Bacterial lipocalin signature.
		>BCTLIPOCALIN#Bacterial lipocalin signature.

Length = 171

Score = 300 bits (770), Expect = e-108
Identities = 77/151 (50%), Positives = 108/151 (71%), Gaps = 1/151 (0%)

Query: 25 PKGVTVVNNFDAKRYLGTWYEIARFDHRFERGLDKVTATYSLRDDGGINVINKGYNPDRE 84
P+ V V++F+ YLG WYE+AR DH FERGL +VTA Y +R+DGGI+V+N+GY+ ++
Sbjct: 20 PESVKPVSDFELNNYLGKWYEVARLDHSFERGLSQVTAEYRVRNDGGISVLNRGYSEEKG 79

Query: 85 MWQKTEGKAYFTGDPSRAALKVSFFGPFYGGYNVIALDRE-YRHALVCGPDRDYLWILSR 143
W++ EGKAYF + LKVSFFGPFYG Y V LDRE Y +A V GP+ +YLW+LSR
Sbjct: 80 EWKEAEGKAYFVNGSTDGYLKVSFFGPFYGSYVVFELDRENYSYAFVSGPNTEYLWLLSR 139

Query: 144 TPTISDEMKQQMLAIATREGFEVNKLIWVKQ 174
TPT+ + + + ++ GF+ N+LI+V+Q
Sbjct: 140 TPTVERGILDKFIEMSKERGFDTNRLIYVQQ 170


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2785IGASERPTASE502e-08 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 49.7 bits (118), Expect = 2e-08
Identities = 40/238 (16%), Positives = 76/238 (31%), Gaps = 8/238 (3%)

Query: 197 PNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVREKNRDALERKLEIEQQEAFMTLEQ 256
N A+ + + E R A + E E +QE+ +
Sbjct: 999 TPNNIQAD-VPSVPSNNEEIARVDEAPVPPPAPATPSETT---ETVAENSKQESKTVEKN 1054

Query: 257 EQQVKTRTAEQNAKIAAFEAERHREAE-QTRILAERQIQETEIEREQAVRSRKVEAEREV 315
EQ TA+ + A EA+ + +A QT +A+ + E + + + VE E +
Sbjct: 1055 EQDATETTAQN--REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112

Query: 316 RIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANDALADAVRAQ-QNVETTRQTAEA 374
+++ + Q+V ++ +Q +++ Q AR ND + Q Q T A
Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172

Query: 375 DRAKQVALIAAAQDAETKAVELTVRAKAEKEAAELQAAAIIELAEATRKKGLAEAEAQ 432
+ V A Q E + + + +
Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2787LPSBIOSNTHSS290.027 Lipopolysaccharide core biosynthesis protein signat...
		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein

signature.
Length = 166

Score = 29.0 bits (65), Expect = 0.027
Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 347 GVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRL 383
G FD + GH+ + +L D++ VAV + + + +
Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPM 43


45SeKA_A2855SeKA_A2890Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A28551133.365058conserved hypothetical protein
SeKA_A28560133.328727LppC superfamily
SeKA_A28572152.362703conserved hypothetical protein
SeKA_A28582152.180025DnaA initiator-associating protein DiaA
SeKA_A28591183.087970putative phospholipid-binding domain protein
SeKA_A28601182.196073NAD dependent epimerase/dehydratase family
SeKA_A28610162.602851intracellular peptidase, PfpI family
SeKA_A28621162.929737conserved hypothetical protein
SeKA_A2863-1143.077037GIY-YIG catalytic domain protein
SeKA_A2864-1121.557726acetyltransferase, GNAT family
SeKA_A2865-112-0.219351sterol-binding protein
SeKA_A28660120.399485peptidase, U32 family
SeKA_A2867-1180.997405peptidase, U32 family
SeKA_A2868-217-0.089615luciferase family protein
SeKA_A2869020-1.0242282-dehydro-3-deoxyphosphooctonate aldolase
SeKA_A28701210.354990putative cytoplasmic protein
SeKA_A28713251.599112tryptophan-specific transport protein
SeKA_A28725321.849127cold-shock DEAD box protein A
SeKA_A28735270.385566lipoprotein NlpI
SeKA_A28765310.891659ribosomal protein S15
SeKA_A28785281.010134tRNA pseudouridine synthase B
SeKA_A2879425-0.240123ribosome-binding factor A
SeKA_A2880324-0.327334translation initiation factor IF-2
SeKA_A2881016-0.517989transcription termination/antitermination factor
SeKA_A2882-112-0.262147conserved hypothetical protein
SeKA_A2884-213-0.091485*argininosuccinate synthase
SeKA_A28850140.635606putative cytoplasmic protein
SeKA_A28870181.764980*preprotein translocase, SecG subunit
SeKA_A28881191.477624phosphoglucosamine mutase
SeKA_A28902180.240548dihydropteroate synthase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2856IGASERPTASE330.003 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 33.5 bits (76), Expect = 0.003
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 8/120 (6%)

Query: 289 QAVEMQPAAAPDAPVEPGVEETQPQMTNGVASPSQASVSDLTDDAPAQSATPVSAPQTPP 348
Q+ +QP A P +P V +PQ + A + + PV+ T
Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTN----TTADTEQPAKETSSNVEQPVTESTTVN 1190

Query: 349 ATASAPADPSAELKIYDTSSQPLD-QVLAQVQQDGASIVVGPLLKNNVEALMKSNTPLNV 407
S +P ++QP + ++ V + N A SN V
Sbjct: 1191 TGNSVVENPENTT---PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2858RTXTOXINA280.028 Gram-negative bacterial RTX toxin determinant A family...
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

signature.
Length = 1024

Score = 28.0 bits (62), Expect = 0.028
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 42 NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIA-------NDRL 94
K+L GN + A T + IA + V AI+ D+
Sbjct: 277 TKVL--GNVGKGISQYIIAQRAAQGLSTSAAAAGLIA----SAVTLAISPLSFLSIADKF 330

Query: 95 HD----EVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVA 141
E Y+++ + LG+ GD LLA + A++A++T T++A
Sbjct: 331 KRANKIEEYSQRFKKLGYDGDSLLAAFHKETG-----AIDASLTTISTVLA 376


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2860NUCEPIMERASE300.008 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 29.8 bits (67), Expect = 0.008
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 16/55 (29%)

Query: 4 VLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGV--YNP-HDPQLTDA 55
L+TGA G +G H+ + L+ +VG+ N +D L A
Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGH-------------QVVGIDNLNDYYDVSLKQA 44


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2864PF00577270.040 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 27.1 bits (60), Expect = 0.040
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 11 APGIDALLRRSFESDAEAKLVHDLREDGF-LTLGLVATDDEGQVVGYVA 58
P A++R F++ KL+ L + L G + T + Q G VA
Sbjct: 779 VPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVA 827


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2880TCRTETOQM732e-15 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 73.0 bits (179), Expect = 2e-15
Identities = 69/313 (22%), Positives = 110/313 (35%), Gaps = 77/313 (24%)

Query: 398 IMGHVDHGKTSLLDYI-----RSTKVASGEAG-------------GITQHIGAYHVETDN 439
++ HVD GKT+L + + T++ S + G GIT G + +N
Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67

Query: 440 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAV 499
+ +DTPGH F + R D +L+++A DGV QT + G+P + +
Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127

Query: 500 NKIDKPEADPDRV----KNELSQYGI-----------------LPEEWG----------- 527
NKID+ D V K +LS + E+W
Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187

Query: 528 ---------------GESQFV---------HVSAKAGTGIDELLDAILLQAEVLELKAVR 563
ES H SAK GID L++ I +
Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245

Query: 564 KGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVL-CGFEYGRVRAMRNELGQEVLEA 622
+ G V + + R +A + + G LH D V E ++ M + E+ +
Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKI 305

Query: 623 GPSIPVEILGLSG 635
+ EI+ L
Sbjct: 306 DKAYSGEIVILQN 318


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2887SECGEXPORT1587e-54 Protein-export SecG membrane protein signature.
		>SECGEXPORT#Protein-export SecG membrane protein signature.

Length = 110

Score = 158 bits (400), Expect = 7e-54
Identities = 107/109 (98%), Positives = 109/109 (100%)

Query: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTAVLA 60
MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTA+LA
Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60

Query: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAQPTSDIP 109
TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA+PTSDIP
Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDIP 109


46SeKA_A2926SeKA_A2956Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2926-2103.050968radical SAM protein, TIGR01212 family
SeKA_A2928-2103.285273glutamate synthase (NADPH), small subunit
SeKA_A2931-2103.027307cytosine permease
SeKA_A2932-2122.887787cytosine deaminase
SeKA_A2933-2122.493546putative cytoplasmic protein
SeKA_A2934-2122.753519putative N-acetylmannosamine kinase
SeKA_A2935-3121.606917bifunctional enzyme NanE/nanK
SeKA_A2936-2140.424061putative sialic acid transporter
SeKA_A2937-118-0.398141N-acetylneuraminate lyase
SeKA_A2938225-0.991101transcriptional regulator NanR
SeKA_A29391180.122846stringent starvation protein B
SeKA_A2940021-0.401845stringent starvation protein A
SeKA_A29410140.134322hypothetical protein
SeKA_A2942-1130.787969ribosomal protein S9
SeKA_A2943-2111.126998ribosomal protein L13
SeKA_A2944-2183.478880ATPase, AFG1 family
SeKA_A2945-1245.603709conserved hypothetical protein
SeKA_A2946-1266.051918protease DegQ
SeKA_A2947-1275.904765periplasmic serine peptidase DegS
SeKA_A29480275.616307putative inner membrane protein
SeKA_A29490264.770874oxaloacetate decarboxylase beta chain
SeKA_A29500202.283986oxaloacetate decarboxylase alpha subunit
SeKA_A2951-113-2.102334oxaloacetate decarboxylase gamma chain 2
SeKA_A2952014-2.100014L(+)-tartrate dehydratase subunit beta (L-TTD
SeKA_A2953116-1.542712L(+)-tartrate dehydratase subunit alpha (L-TTD
SeKA_A2954118-1.619073anion transporter
SeKA_A2955317-2.323682transcriptional regulator
SeKA_A2956317-2.602109putative GntR-family transcriptional regulator
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2934PF03309300.008 Bvg accessory factor
		>PF03309#Bvg accessory factor

Length = 271

Score = 30.1 bits (68), Expect = 0.008
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 4 LAIDIGGTKLAAALIDNN---LRISQRRELPTPASKTPDALREALKALVEPLRAEARQVA 60
LAID+ T LI + ++ Q+ + T T D L + L+ +
Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAERLTGAS 62

Query: 61 IAST 64
ST
Sbjct: 63 GLST 66


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2936TCRTETB592e-11 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 59.1 bits (143), Expect = 2e-11
Identities = 81/455 (17%), Positives = 160/455 (35%), Gaps = 46/455 (10%)

Query: 30 LLDGFDFVLIALVLTEVQSEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMV 89
+ +++ + L ++ ++F + +A ++ G + G + D+ G + ++
Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

Query: 90 SSIILFSVGTLACGFAPGYTTMFI-ARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF 148
II+ G++ + ++ I AR + G G A V PK R KA G
Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143

Query: 149 LISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKA 208
+ S ++G V + ++ W L I ++ II +L K + +
Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR--------- 194

Query: 209 PVRTMVDILYRGEHRIINILMTFVAAAALWFCFAGNLQNAAIVAGLGLLCAVIFISFMVQ 268
+G I I++ V + IV+ L +IF+ + +
Sbjct: 195 ---------IKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSF---LIFVKHIRK 242

Query: 269 SSGK----RWPTGVMLMLVVLFAFLYSWPIQA---LLPTYLKTELAYDPHTVANVLFFSG 321
+ + M+ VL + + ++P +K + +V+ F G
Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302

Query: 322 -FGAAVGCCVGGFLGDWLGTRK-AYVCSLLASQILIIPVFAIGGTNVWVLGLLLFFQQML 379
+ +GG L D G + S + F + T W + +++ F
Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT-SWFMTIIIVFVLGG 361

Query: 380 GQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAP-ILGALIA-----QRL---- 429
++ ++ + AG+ L I+G L++ QRL
Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPME 421

Query: 430 -DLGTALAS---LSFSLTFVVILLIGLDMPSRVQR 460
D T L S L FS V+ L+ L++ QR
Sbjct: 422 VDQSTYLYSNLLLLFSGIIVISWLVTLNVYKHSQR 456


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2946V8PROTEASE704e-15 V8 serine protease family signature.
		>V8PROTEASE#V8 serine protease family signature.

Length = 336

Score = 69.7 bits (170), Expect = 4e-15
Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 32/187 (17%)

Query: 90 GLGSGVIIDAAKGYVLTNNHVINQAQKISIQL------------NDGREFDAKLIGGDDQ 137
+ SGV++ K +LTN HV++ L +G ++ +
Sbjct: 102 FIASGVVV--GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159

Query: 138 SDIALLQIQN-------PSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIISALG 190
D+A+++ + ++++ + +V G P ++ +
Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-------VATMW 212

Query: 191 RSGLNLEGLEN-FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSIGIGFAIPSN 249
S + L+ +Q D S GNSG + N E+IGI+ I N
Sbjct: 213 ESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHW---GGVPNEFNGAVFINEN 269

Query: 250 MAQTLAQ 256
+ L Q
Sbjct: 270 VRNFLKQ 276


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2947V8PROTEASE534e-10 V8 serine protease family signature.
		>V8PROTEASE#V8 serine protease family signature.

Length = 336

Score = 53.5 bits (128), Expect = 4e-10
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 26/160 (16%)

Query: 77 RTLGSGVIMDQRGYIITNKHVINDADQIIVALQ------------DGRVFEALLVGSDSL 124
+ SGV++ + ++TNKHV++ AL+ +G +
Sbjct: 101 TFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159

Query: 125 TDLAVLKI-------NATGGLPTIPINTKRTPHIGDVVLAIGNPYNLGQTITQGIISATG 177
DLA++K + + ++ + + G P + T + G
Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESKG 216

Query: 178 RIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINT 217
+I + +Q D S GNSG + N E++GI+
Sbjct: 217 KI---TYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2950RTXTOXIND310.018 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 30.6 bits (69), Expect = 0.018
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 508 ASSAPVQAAAPA-------GAGTPVTAPLAGNIWKVIATEGQSVAEGDVLLILEAMKMET 560
+ V+ A A G + + ++I EG+SV +GDVLL L A+ E
Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134

Query: 561 EIRAAQA 567
+ Q+
Sbjct: 135 DTLKTQS 141


47SeKA_A2983SeKA_A2997Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2983-118-4.353983DNA-binding protein Fis
SeKA_A2984-218-2.804154DNA methylase
SeKA_A2985-216-1.973943putative periplasmic protein
SeKA_A2986-216-2.014843ggdef domain/eal domain protein
SeKA_A2987-119-3.444836transcriptional repressor
SeKA_A2988020-2.861509conserved hypothetical protein
SeKA_A2989019-2.054719acriflavine resistance protein E
SeKA_A2990122-3.506128AcrB protein
SeKA_A2992333-6.922336conserved hypothetical protein
SeKA_A2991230-4.342141putative lipoprotein
SeKA_A2993226-3.037196hypothetical protein
SeKA_A2997222-1.753539*conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2983DNABINDNGFIS1573e-54 DNA-binding protein FIS signature.
		>DNABINDNGFIS#DNA-binding protein FIS signature.

Length = 98

Score = 157 bits (399), Expect = 3e-54
Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ
Sbjct: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60

Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
Sbjct: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2987HTHTETR1282e-39 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 128 bits (324), Expect = 2e-39
Identities = 82/216 (37%), Positives = 130/216 (60%), Gaps = 3/216 (1%)

Query: 1 MAKKTKADALKTRQHLIETAIAQFALRGVANTTLNDIADAADVTRGAIYWHFENKTQLFN 60
MA+KTK +A +TRQH+++ A+ F+ +GV++T+L +IA AA VTRGAIYWHF++K+ LF+
Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60

Query: 61 EVW-LQQPPLRELIQDRLTGCWNDNPLQDLREKFIAALQYIAAVPRQQALMQILYHKCEF 119
E+W L + + EL + +PL LRE I L+ R++ LM+I++HKCEF
Sbjct: 61 EIWELSESNIGELELEYQAKF-PGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119

Query: 120 HNGM-ISEQAIREKIGFHHQSLLEVLQRCMDKKLISGSLDLDVILIILHGSFSGIVKNWL 178
M + +QA R + + + L+ C++ K++ L II+ G SG+++NWL
Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179

Query: 179 MNPTSYDLYKQAPALVDNVLKMLSPDGSVRQLMPNE 214
P S+DL K+A V +L+M ++R NE
Sbjct: 180 FAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2989RTXTOXIND432e-06 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 42.5 bits (100), Expect = 2e-06
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 98 ATYQADYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADA-RQADAAV 156
+ K +L + E+ A + Q + I D RQ +
Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLV----------TQLFKNEILDKLRQTTDNI 311

Query: 157 VAAKAAVESARINLAYTKVTSPISGRIGKSNV-TEGALVTNGQSTELATVQQLDPIYVDV 215
+ + + +P+S ++ + V TEG +VT + T + V + D + V
Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTA 370

Query: 216 TQSSND--FMRLKQSVE 230
+ D F+ + Q+
Sbjct: 371 LVQNKDIGFINVGQNAI 387



Score = 37.1 bits (86), Expect = 1e-04
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 13/127 (10%)

Query: 46 TAPLAVTTELPGR-TSAFRIAEVRPQVSGIVLKRNFTEGSDVEAGQSLYQIDPATYQADY 104
+ + G+ T + R E++P + IV + EG V G L ++ +AD
Sbjct: 77 LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD- 135

Query: 105 DSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVVAAKAAVE 164
K++++ A L RY L E ++ +
Sbjct: 136 ------TLKTQSSLLQARLEQTRYQIL-----SRSIELNKLPELKLPDEPYFQNVSEEEV 184

Query: 165 SARINLA 171
+L
Sbjct: 185 LRLTSLI 191


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2990ACRIFLAVINRP13910.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 1391 bits (3602), Expect = 0.0
Identities = 917/1032 (88%), Positives = 974/1032 (94%)

Query: 1 MANFFIRRPIFAWVLAIILMMAGALAIMQLPVAQYPTIAPPAVSISATYPGADAQTVQDT 60
MANFFIRRPIFAWVLAIILMMAGALAI+QLPVAQYPTIAPPAVS+SA YPGADAQTVQDT
Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

Query: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ
Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121 EVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGVGDVQLFGA 180
EVQQQGISVEKSSSS+LMVAGFVSDNP TTQDDISDYVASN+KD++SRLNGVGDVQLFGA
Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 181 QYAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
QYAMRIWLDA+LLNKY+LTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR
Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240

Query: 241 KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGIKLATGANAL 300
K+PEEFGKVTLRVN+DGSVV LKDVAR+ELGGENYNV+ARINGKPA+GLGIKLATGANAL
Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300

Query: 301 DTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQ 360
DTA AIKAKLAELQPFFPQGMKV+YPYDTTPFV++SIHEVVKTLFEAI+LVFLVMYLFLQ
Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 361 NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
N+RATLIPTIAVPVVLLGTFA+LAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421 MEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
MED L P+EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL
Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481 SVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTRFDHSVNHYTNSVSGIVRNTGRY 540
SVLVALILTPALCATLLKPVSAEHHE K GFFGWFNT FDHSVNHYTNSV I+ +TGRY
Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540

Query: 541 LIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLPSGATQERTQKVLDQVTHYYLNN 600
L+IY LIV GM VLFLRLP+SFLPEEDQGVFLTMIQLP+GATQERTQKVLDQVT YYL N
Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600

Query: 601 EKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNGEENSVEAVIARATRAFSQIRDG 660
EKANVESVFTVNGFSFSGQ QN+GMAFVSLKPWEERNG+ENS EAVI RA +IRDG
Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660

Query: 661 LVFPFNMPAIVELGTATGFDFELIDQGGLGHDALTKARNQLLGMVAKHPDLLVRVRPNGL 720
V PFNMPAIVELGTATGFDFELIDQ GLGHDALT+ARNQLLGM A+HP LV VRPNGL
Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720

Query: 721 EDTPQFKLDVDQEKAQALGVSLSDINETISAALGGYYVNDFIDRGRVKKVYVQADAQFRM 780
EDT QFKL+VDQEKAQALGVSLSDIN+TIS ALGG YVNDFIDRGRVKK+YVQADA+FRM
Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780

Query: 781 LPGDINNLYVRSANGEMVPFSTFSSARWIYGSPRLERYNGMPSMELLGEAAPGRSTGEAM 840
LP D++ LYVRSANGEMVPFS F+++ W+YGSPRLERYNG+PSME+ GEAAPG S+G+AM
Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840

Query: 841 SLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSV 900
+LMENLAS+LP GIGYDWTGMSYQERLSGNQAPAL AIS +VVFLCLAALYESWSIP SV
Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900

Query: 901 MLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGRGLI 960
MLVVPLG+VG LLAA+L NDVYF VGLLTTIGLSAKNAILIVEFAKDLMEKEG+G++
Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960

Query: 961 EATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAIFF 1020
EATL A RMRLRPILMTSLAFILGV+PL IS GAGSGAQNAVG GVMGGM++ATLLAIFF
Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020

Query: 1021 VPVFFVVVKRRF 1032
VPVFFVV++R F
Sbjct: 1021 VPVFFVVIRRCF 1032


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2991adhesinb290.001 Adhesin B signature.
		>adhesinb#Adhesin B signature.

Length = 310

Score = 29.0 bits (65), Expect = 0.001
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 1 MKR---LIPVALLTTLLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGG 57
MK+ L+ + L LA C+ + +V TN+ + T++ IAG
Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKN-------IAGD 53

Query: 58 AAAVAGLT 65
+ +
Sbjct: 54 KINLHSIV 61


48SeKA_A3078SeKA_A3094Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A30782242.938317nitrite reductase [NAD(P)H], large subunit
SeKA_A30793212.494857nitrite reductase [NAD(P)H], small subunit
SeKA_A30803202.021471conserved hypothetical protein
SeKA_A30812182.274212nitrite transporter NirC
SeKA_A30823182.136133siroheme synthase
SeKA_A30833171.278537BigA
SeKA_A3084-1140.127924putative outer membrane lipoprotein
SeKA_A3085-1130.909507tryptophanyl-tRNA synthetase
SeKA_A30861120.997016phosphoglycolate phosphatase
SeKA_A30870101.505525ribulose-phosphate 3-epimerase
SeKA_A30881111.895318DNA adenine methylase
SeKA_A30891123.284996protein DamX
SeKA_A30901143.2877283-dehydroquinate synthase
SeKA_A30912163.954277shikimate kinase
SeKA_A3092-1144.244250protein transport protein HofQ
SeKA_A3093-1153.648631conserved hypothetical protein
SeKA_A3094-1133.045890conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3089IGASERPTASE402e-05 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 40.0 bits (93), Expect = 2e-05
Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 18/197 (9%)

Query: 146 ANATQPAPGATSAEQTAGNTSQDISLPPISSTPTQGQSPVVADGQQRVEVQGDLNNALTQ 205
N Q + + + +PP + + VA+ ++ + N
Sbjct: 1000 PNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDAT 1059

Query: 206 NPEQMNNVAVN---STLPTEPATVAPVRNGSTTRQAAVSEPTERHTTRPERKQAV----- 257
N S + T ++GS T++ +E E T E K V
Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119

Query: 258 ---------IEPKKPQTTAKTTTAEPKKPVAP-VKRTEPAAPAATPKATTTTAAPTATAS 307
+ PK+ Q+ AEP + P V EP + T T A T++
Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179

Query: 308 AAPVQTAKPAQASTTPV 324
PV + + V
Sbjct: 1180 EQPVTESTTVNTGNSVV 1196


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3091CARBMTKINASE326e-04 Bacterial carbamate kinase signature.
		>CARBMTKINASE#Bacterial carbamate kinase signature.

Length = 314

Score = 32.5 bits (74), Expect = 6e-04
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 32 FYDSDQEIEKRTGADVGWVFDVEGEDGFRN----------REEKVINELTEKQGIVLATG 81
FYD + KR + GW+ + G+R E + I +L E+ IV+A+G
Sbjct: 136 FYDEETA--KRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASG 193

Query: 82 GGSVKSRETRNRLSARGVVVYLETTIEKQLA 112
GG V + +GV E I+K LA
Sbjct: 194 GGGVPVILEDGEI--KGV----EAVIDKDLA 218


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3092TYPE3OMGPROT2705e-87 Type III secretion system outer membrane G protein ...
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

family signature.
Length = 607

Score = 270 bits (693), Expect = 5e-87
Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 18/301 (5%)

Query: 131 LENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEKWVSQMDL 190
L + +I D + +A SA+ + D N +++RD+ + ++ + +D
Sbjct: 219 LSDATIQQVTVDNQRIPQAAT-RASAQARVEADPSLNAIIVRDSPERMPMYQRLIHALDK 277

Query: 191 PVAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAATSRVGFNI 250
P A++E+A IV IN L ELGV W + T + T ++A+ G
Sbjct: 278 PSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQSNIASN----GALG 333

Query: 251 GRINGRLLDL---ELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGAT 307
++ R LD ++ LE + +++ P LL A I SE Y +G+ A
Sbjct: 334 SLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH-SETYYVKVTGKEVA- 391

Query: 308 SVEFKEAVLG--MEVTPTVLQKG---RIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 362
E K G + +TP VL +G I L LHI +G + I + ++T
Sbjct: 392 --ELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG-IPTISRTVVDT 448

Query: 363 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 422
V G++L +GGI+ + VPLLGDIP++G LFR + R + I PR+
Sbjct: 449 VARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVRLFIIEPRI 508

Query: 423 V 423
+
Sbjct: 509 I 509


49SeKA_A3104SeKA_A3124Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A31042212.939497hypothetical protein
SeKA_A31052202.995440phosphoenolpyruvate carboxykinase
SeKA_A31061223.588065osmolarity sensor protein EnvZ
SeKA_A31071243.493463transcriptional regulatory protein OmpR
SeKA_A31080253.542115transcription elongation factor GreB
SeKA_A3109-1213.324225putative transcriptional accessory protein
SeKA_A3110-2162.342581ferrous iron transport protein A
SeKA_A3111-2153.035012ferrous iron transport protein B
SeKA_A3112-1152.412872conserved domain protein
SeKA_A3113-2112.459136hypothetical protein
SeKA_A3114-2123.263232conserved hypothetical protein
SeKA_A3115-2163.384046putative pimeloyl-BioC--CoA transferase BioH
SeKA_A3116-1143.007292protein GntX
SeKA_A3117-2142.469330protein GntY
SeKA_A3118-2153.344449high-affinity gluconate transporter
SeKA_A3119-2153.2214364-alpha-glucanotransferase
SeKA_A3120-1152.552881maltodextrin phosphorylase
SeKA_A31211173.604013transcriptional regulator MalT
SeKA_A31222223.883333conserved hypothetical protein
SeKA_A31232224.151241RNA 3'-phosphate cyclase
SeKA_A31242202.743354RtcB protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3106PF06580340.001 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 33.7 bits (77), Expect = 0.001
Identities = 27/188 (14%), Positives = 71/188 (37%), Gaps = 45/188 (23%)

Query: 267 INKDIEECNAIIEQFIDYLR------TGQEMPM--EMADLNSVL-------GEVIAAESG 311
I +D + ++ + +R +++ + E+ ++S L + +
Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQ---- 241

Query: 312 YEREINTALQAGSIQVKMHPLSIKRAVANMVVNA--ARYGNGWIKVSSGTESHRAWFQVE 369
+E +IN A+ V++ P+ ++ V N + + G I + ++ +VE
Sbjct: 242 FENQINPAIM----DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297

Query: 370 DDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIV-QRIIDNH--NGMLEIGTSERGG 426
+ G ++ TG GL V +R+ + +++ + ++G
Sbjct: 298 NTGSLALKNTKE----------------STGTGLQNVRERLQMLYGTEAQIKL-SEKQGK 340

Query: 427 LSIRAWLP 434
++ +P
Sbjct: 341 VNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3107HTHFIS986e-26 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 98.4 bits (245), Expect = 6e-26
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 3/136 (2%)

Query: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65
ILV DDD +R +L + L+ G+ VR +NA + R + L+V D+++P E+
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVL---RR 122
+ R++ +P+++++A+ + I E GA DY+PKPF+ EL+ I L +R
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 123 QANELPGAPSQEEAVI 138
+ ++L ++
Sbjct: 125 RPSKLEDDSQDGMPLV 140


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3111TCRTETOQM429e-06 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 41.8 bits (98), Expect = 9e-06
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 30/142 (21%)

Query: 1 MKKLTIGLIGNPNSGKTTLFNQL---TGARQRVGNW-AGVTV------ERKEG---QFAT 47
MK + IG++ + ++GKTTL L +GA +G+ G T ER+ G Q
Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60

Query: 48 T-----DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE-RN 101
T + +V ++D PG + SL +L G A LLI+ D + R
Sbjct: 61 TSFQWENTKVNIIDTPG-HMDFLAEVYRSLS-------VLDG-AILLISAKDGVQAQTRI 111

Query: 102 LYLTLQLLELGIPCIVALNMLD 123
L+ L+ ++GIP I +N +D
Sbjct: 112 LFHALR--KMGIPTIFFINKID 131


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3117PF06580280.038 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 27.5 bits (61), Expect = 0.038
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 5/26 (19%)

Query: 96 AKMRKVADDAPLMERVEYALQSQINP 121
KM +A +A LM AL++QINP
Sbjct: 152 WKMASMAQEAQLM-----ALKAQINP 172


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3121RTXTOXIND300.044 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 30.2 bits (68), Expect = 0.044
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 534 QSEIQFAQGFLQAAWETQERAFQLIKEQHLEQLPMHEFLVRIRAQLL------WAWARLD 587
+++ Q L A Q R L + L +LP + Q + + +
Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192

Query: 588 EAEASARSGIAVLSTFQPQQQLQCLTLLVQCSLARGDLDNARSQLNRLENLLGNG 642
E ++ ++ +++ + LT+L + + +S+L+ +LL
Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247


50SeKA_A3142SeKA_A3154Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3142-1153.323962glycogen debranching enzyme GlgX
SeKA_A3143-1173.0122591,4-alpha-glucan branching enzyme
SeKA_A3144-1192.285704aspartate-semialdehyde dehydrogenase
SeKA_A31450191.914553gluconate transporter GntU
SeKA_A31460160.970832shikimate kinase
SeKA_A31470140.069328transcriptional regulator GntR
SeKA_A3148017-4.992992protein YhhW
SeKA_A3149224-7.478661putative oxidoreductase YhhX
SeKA_A3150227-7.255189hypothetical protein
SeKA_A3152223-6.219769acetyltransferase, gnat family
SeKA_A3153117-4.552611hypothetical protein
SeKA_A3154117-3.804681ribokinase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3149MICOLLPTASE300.013 Microbial collagenase metalloprotease (M9) signature.
		>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature.

Length = 1104

Score = 30.5 bits (68), Expect = 0.013
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 268 FAADESVGVLEYVNDDGVTVKEEVKPETGDYGRVYDALYQTLTVGTPNYV 317
++AD+ ++Y N DG + K + G+ Y +YQ GT NY+
Sbjct: 1052 YSADDLSNYVDYANADGNKLSNTCK---LNPGKYYLCVYQFENSGTGNYI 1098


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3152SACTRNSFRASE358e-05 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 34.5 bits (79), Expect = 8e-05
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 55 VACIDDIVVGHLSIQVTQRPRRSHVADFGICVDARWHNRGIASALIRTMID------MCD 108
+ +++ +G + I+ + + D + D R G+ +AL+ I+ C
Sbjct: 69 LYYLENNCIGRIKIRSNWN-GYALIEDIAVAKDYRKK--GVGTALLHKAIEWAKENHFCG 125

Query: 109 NWLRVDRIELTVFVDNEPAVAVYKKYGFEIEG 140
L I N A Y K+ F I
Sbjct: 126 LMLETQDI-------NISACHFYAKHHFIIGA 150


51SeKA_A3165SeKA_A3194Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3165-1243.753435hypothetical protein
SeKA_A3166-2213.396017conserved hypothetical protein
SeKA_A3167-2212.992086high-affinity branched-chain amino acid ABC
SeKA_A3168-2182.371437high-affinity branched-chain amino acid ABC
SeKA_A3169-1181.915575high-affinity branched-chain amino acid ABC
SeKA_A31701171.067336high-affinity branched-chain amino acid
SeKA_A31710190.611134high-affinity branched-chain amino acid ABC
SeKA_A31720211.681441hypothetical protein
SeKA_A31730202.725009acetyltransferase, gnat family
SeKA_A31742182.477917conserved hypothetical protein
SeKA_A31752172.660554high-affinity branched-chain amino acid ABC
SeKA_A31762172.280132alternative sigma factor RpoH
SeKA_A31773162.350384cell division protein FtsX
SeKA_A31782152.138927cell division ATP-binding protein FtsE
SeKA_A31792144.074606cell division protein FtsY
SeKA_A31801164.244059RNA methyltransferase, RsmD family
SeKA_A31811153.978636overlaps previous ORF, probably uses downstream
SeKA_A31822143.660942putative inner membrane protein
SeKA_A31831143.448230putative membrane protein
SeKA_A31841143.795640cadmium-translocating P-type ATPase
SeKA_A3185-1131.297144methyl-accepting chemotaxis protein I
SeKA_A31861151.314560conserved hypothetical protein
SeKA_A31870141.566488putative membrane protein
SeKA_A31880142.018603DcrB protein
SeKA_A3189-2143.238694protein YhhS
SeKA_A3190-2133.434503inner membrane protein YhhT
SeKA_A3191-1154.1778664'-phosphopantetheinyl transferase AcpT
SeKA_A3192-2164.016547nickel-responsive transcriptional regulator
SeKA_A3193-3143.484475ABC transporter, ATP-binding protein
SeKA_A3194-3143.660036ABC transporter permease and ATP-binding
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3182SHIGARICIN270.026 Ribosome inactivating protein family signature.
		>SHIGARICIN#Ribosome inactivating protein family signature.

Length = 289

Score = 26.7 bits (59), Expect = 0.026
Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 7 FFIIIIALIVVAASFRFVQQRREKAANEA 35
+++I AA ++F++Q+ K ++
Sbjct: 173 ALMVLIQSTSEAARYKFIEQQIGKRVDKT 201


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3184ACRIFLAVINRP300.037 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 30.2 bits (68), Expect = 0.037
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 336 AEERRAPIERFIDRFSRIYTPVIMVIALLVTLIPPLMFDGGWQEWIYKGLTLLLIGCPCA 395
E++ P E S+I ++ + +L + P+ F GG IY+ ++ ++ A
Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVS---A 477

Query: 396 LVISTPAAITSGLAAAAR 413
+ +S A+ A A
Sbjct: 478 MALSVLVALILTPALCAT 495


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3186PF012061047e-33 SirA family protein
		>PF01206#SirA family protein

Length = 76

Score = 104 bits (260), Expect = 7e-33
Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 39 DHTLDALGLRCPEPVMMVRKTVRNMQTGETLLIIADDPATTRDIPGFCTFMEHDLLAQET 98
D +LDA GL CP P++ +KT+ M GE L ++A DP + +D F H+LL Q+
Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64

Query: 99 EGLPYRYLLRKA 110
E Y + L++A
Sbjct: 65 EDGTYHFRLKRA 76


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3189TCRTETA479e-08 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 46.7 bits (111), Expect = 9e-08
Identities = 75/403 (18%), Positives = 138/403 (34%), Gaps = 42/403 (10%)

Query: 13 LRLNLRIVSIVMFNFASYLTIGLPLAVLPGYVHD--AMGFSAFWAGLIISLQYFATLLSR 70
++ N ++ I+ + IGL + VLPG + D G++++L
Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60

Query: 71 PHAGRYADVLGPKKIVVFGLCGCFLSGLGYLLADIASAWPLISLLLLGLGRVILGI-GQS 129
P G +D G + +++ L G + + Y + A L +L +GR++ GI G +
Sbjct: 61 PVLGALSDRFGRRPVLLVSLAG---AAVDYAIMATAPF-----LWVLYIGRIVAGITGAT 112

Query: 130 FAGTGSTLWGVGVVGSLHIGRVISWNGIVTYGAMAMGAPLGVLCYAWGGLQGLALTVMGV 189
A G+ + + R + M G LG L G
Sbjct: 113 GAVAGAYIADITDGDER--ARHFGFMSACFGFGMVAGPVLGGLM----GGFSPHAPFFAA 166

Query: 190 ALLAILLAL----------PRPSVKANKGKPLPFRAVLGRVWLYGMALALA-----SAGF 234
A L L L + P + + +A +A
Sbjct: 167 AALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVG 226

Query: 235 GVIATFITLFYDAK-GWDGAAFVLTLFSVAFVGT---RLLFPNGINRLGGLNVAMICFGV 290
V A +F + + WD ++L + + + ++ RLG M+
Sbjct: 227 QVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286

Query: 291 EIIGLLLVGTAAMPWMAKIGVLLTGMGFSLVFPALGVVAVKAVPPQNQGAALATYTVFMD 350
+ G +L+ A WMA ++L + PAL + + V + QG +
Sbjct: 287 DGTGYILLAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSRQVDEERQGQLQGSLAALTS 345

Query: 351 MSLGVTGPLAGLVMTWAGVPV----IYLAAAGLVTMALLLTWR 389
++ + GPL + A + ++A A L + L R
Sbjct: 346 LT-SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3191ENTSNTHTASED336e-04 Enterobactin synthetase component D signature.
		>ENTSNTHTASED#Enterobactin synthetase component D signature.

Length = 234

Score = 32.7 bits (74), Expect = 6e-04
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 30 RRASWLAGRVLLSRALSPL---PEMVYGEQGKPAFSAGTPLWFNLSHSGDTIALLLSDEG 86
R+A LAGR+ AL + G++ +P + G L+ ++SH T ++S +
Sbjct: 46 RKAEHLAGRIAAVHALREVGVRTVPGMGDKRQPLWPDG--LFGSISHCATTALAVISRQ- 102

Query: 87 EVGCDIEVIRPRDNWRSLANAVFSLGEHAEMEA 119
+G DIE I + LA ++ E ++A
Sbjct: 103 RIGIDIEKIMSQHTATELAPSIIDSDERQILQA 135


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3193ABC2TRNSPORT482e-08 ABC-2 type transport system membrane protein signat...
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein

signature.
Length = 262

Score = 48.0 bits (114), Expect = 2e-08
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 200 REREHGTVEHLLVMPVTPFEIMMAKV-WSMGLVVLVVSGLSLMLMVKGVLGVPIEGSIPL 258
R T E +L + +I++ ++ W+ L +G + +V LG + L
Sbjct: 93 RMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG---IGVVAAALGY-TQWLSLL 148

Query: 259 FMLGV-ALSLFATTSIGIFMGTIARSMPQLGLLMILVLLPLQMLSGGSTPRESMPQAVQD 317
+ L V AL+ A S+G+ + +A S LV+ P+ LSG P + +P Q
Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208

Query: 318 IMLTMPTTHFVSLAQAILYRGAGLSIVWPQFLTLLAIGGVFFL-IALLRFR 367
+P +H + L + I+ + + + I FFL ALLR R
Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRRR 259


52SeKA_A3216SeKA_A3229Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3216-120-3.378561hypothetical protein
SeKA_A3217-114-0.449569putative phage endolysin
SeKA_A32180120.386012putative transcriptional regulator
SeKA_A3219-2120.957802hypothetical protein
SeKA_A3220-3131.266972LysR substrate binding domain protein
SeKA_A3221-2141.238066putative ribonuclease
SeKA_A3222-3141.623280MFS transporter, metabolite:H+ symporter (MHS)
SeKA_A3223-2132.898168AsmA family protein
SeKA_A3224-1133.273768diguanylate phosphodiesterase
SeKA_A3226-2143.572977protein YhjJ
SeKA_A3227-2143.653034aerobic C4-dicarboxylate transport protein
SeKA_A3228-2144.132928protein YhjK
SeKA_A3229-2164.452133cellulose synthase operon protein C
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3218HTHFIS335e-04 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 33.3 bits (76), Expect = 5e-04
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query: 26 GISIQSVGQAEELWQKIESAPDALVMLDSGLDAEFCREVLQRIAQQFPEVK-IIITAMDG 84
G ++ A LW+ I + LV+ D + E ++L RI + P++ ++++A
Sbjct: 27 GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSA--- 83

Query: 85 SQKWLHEVMQFNVQAVVPRDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSA 144
+ T + A A + P D + R AL+
Sbjct: 84 -------------------QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR---ALAE 121

Query: 145 RQREILQMLAAGESNKQI 162
+R ++ + +
Sbjct: 122 PKRRPSKLEDDSQDGMPL 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3222TCRTETB330.002 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 33.3 bits (76), Expect = 0.002
Identities = 81/367 (22%), Positives = 126/367 (34%), Gaps = 59/367 (16%)

Query: 79 IGSALFGHFGDRVGRKVTLVASLLTMGISTVIIGLLPGYATIGIFAPLLLALARFGQGLG 138
IG+A++G D++G K LL GI G + G+ F+ LL +ARF QG G
Sbjct: 64 IGTAVYGKLSDQLGIK-----RLLLFGIIINCFGSVIGFVGHSFFS--LLIMARFIQGAG 116

Query: 139 LGGEWGGAALLATENAPPRKR----ALYGSFPQLGAPIGFFFANGTFLLLSW-------- 186
++ P R L GS +G +G + W
Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM 176

Query: 187 -----LLTDEQFMSWGWRV--PF-IFSAVLVIIG-------------LYVRVSLHETPVF 225
+ + + R+ F I +L+ +G ++ VS+ +F
Sbjct: 177 ITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF 236

Query: 226 AKVAAAKKQVKIPLGTLLTKHVRVTILGTFIMLATYTLFYIMTVYSMTYSTAAAPVGLGL 285
K + G + +L I+ T F M Y M + +G
Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIG- 295

Query: 286 PRNEILWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIIL-FALFAFTPLLGSGN 344
+ I++ M+VI FG + G+L D G + I T + + F +F S
Sbjct: 296 --SVIIFPGTMSVIIFG---YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWF 350

Query: 345 PALVFVFLLLGLSLMGL---TFGPMGALLPELFPTEVRYTGASFS-YNVSSILGASVAPY 400
++ VF+L GLS T L E GA S N +S L
Sbjct: 351 MTIIIVFVLGGLSFTKTVISTIVSSS-----LKQQEA---GAGMSLLNFTSFLSEGTGIA 402

Query: 401 IAAWLQS 407
I L S
Sbjct: 403 IVGGLLS 409


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3224SALSPVBPROT290.015 Salmonella virulence plasmid 65kDa B protein signature.
		>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature.

Length = 591

Score = 29.3 bits (65), Expect = 0.015
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 30/160 (18%)

Query: 93 DFFTRHHLLASVNVDGPTLIAMRRQPDILAAMERLPWLRFELV----EHIRLPKDSSFAS 148
DF+ H +++ G T A R D AA WL E V EHI ++
Sbjct: 157 DFWLLHDSNGILHLLGKT--AAARLSDPQAASHTAQWLVEESVTPAGEHI------YYSY 208

Query: 149 MCEFGPLWLDDFGTGMANFSA---LSEVRYDYIKVARELFVMLRQSAEGRNLFTLLLQLM 205
+ E G + + SA LS+V+Y A +L++ + + LFTL+
Sbjct: 209 LAENGDNVDLNGNEAGRDRSAMRYLSKVQYGNATPAADLYLWTSATPAVQWLFTLVFDYG 268

Query: 206 NRYCRGVIVEGVETLEEWRDVQRSPAFAAQGYFLSRPVPL 245
R GV D Q PAF AQ +L+R P
Sbjct: 269 ER--------GV-------DPQVPPAFTAQNSWLARQDPF 293


53SeKA_A3255SeKA_A3270Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3255316-1.539863*membrane-associated sulfatase
SeKA_A3256420-1.873364long polar fimbrial minor protein
SeKA_A3257316-1.396849protein LpfD
SeKA_A3258318-0.639864outer membrane usher protein FimD
SeKA_A3259218-3.042342putative gram-negative pili assembly chaperone,
SeKA_A32600101.408063long polar fimbria protein A
SeKA_A3261082.832097hypothetical protein
SeKA_A32620113.168489putative lipase
SeKA_A3263-1113.249382dna-3-methyladenine glycosylase 1
SeKA_A32640123.138648acetyltransferase, gnat family
SeKA_A32650132.953777biotin sulfoxide reductase
SeKA_A32660181.136839inner membrane lipoprotein YiaD
SeKA_A3267-119-0.9289402-ketogluconate reductase
SeKA_A32681160.517823conserved hypothetical protein
SeKA_A32692210.588934hypothetical protein
SeKA_A32703210.842134helix-turn-helix domain protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3258PF005778010.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 801 bits (2071), Expect = 0.0
Identities = 372/863 (43%), Positives = 520/863 (60%), Gaps = 56/863 (6%)

Query: 19 ALALMIASTFPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKM 78
A A + + FNPRFL D P DLS +E N E PG YRV + +N M
Sbjct: 33 ACAFAAQAPLSSAELYFNPRFLADDPQ--AVADLSRFE-NGQELPPGTYRVDIYLNNGYM 89

Query: 79 ESRTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIP 138
+R + F + +VPCL+R QL MG+ S + + +ACV +I
Sbjct: 90 ATRDVTFNTG------DSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIH 143

Query: 139 QAASHFDFADQTLIMSFPQAAMKQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDS 198
A + D Q L ++ PQA M ARG +P WD G+NA L++YNFSG++ +
Sbjct: 144 DATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSV-----QN 198

Query: 199 ETNYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNT------WDNIGTSLSRAIVPLK 252
NS YLNL+SG+N+GAWRLR+ +TW+ N +++ W +I T L R I+PL+
Sbjct: 199 RIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLR 258

Query: 253 SQLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNY 312
S+LTLGD T GDIFD + RG QL SD+ MLPDSQRGFAPVI GIA+ A+VT++QN Y
Sbjct: 259 SRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGY 318

Query: 313 VIYRTFVQPGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSL 372
IY + V PG F IND+Y NSGDL VTIKE+DGS Q F P+SSV LLQREGH +YS+
Sbjct: 319 DIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSI 378

Query: 373 SAGEYRAGNYNSAEPKFGQLDAMYGLPYGFTVYGGAIFSDDYYSLAGGLGKNFGYIGAIS 432
+AGEYR+GN +P+F Q ++GLP G+T+YGG +D Y + G+GKN G +GA+S
Sbjct: 379 TAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALS 438

Query: 433 IDVTQAKSKLANEENSEGQSYRFLYSKSFN-SGTDFRLLGYKYSTSGYYTFQEATDVRSD 491
+D+TQA S L ++ +GQS RFLY+KS N SGT+ +L+GY+YSTSGY+ F + T R +
Sbjct: 439 VDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMN 498

Query: 492 A-----------------DSSYSQYHKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGK 534
D Y+KR ++Q VTQQLG ++Y + + Q YW
Sbjct: 499 GYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNV 558

Query: 535 QRSLNAGYNGRIGRVNYSIAYTWTNSPEWDESDRLLSFSMSIPLGR------------VW 582
AG N +N++++Y+ T + D++L+ +++IP
Sbjct: 559 DEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHAS 618

Query: 583 SNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGY---GSNGVGNSGSVNLDYQGGVG 639
++Y ++ D +GR GV GT LED+NL+YSVQ GY G G++G L+Y+GG G
Sbjct: 619 ASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYG 678

Query: 640 SASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVE 699
+A++GY+++ D +Q+ YG+ GGV+AH+ G+TL QPL +++ ++ APGA+ A V N GV
Sbjct: 679 NANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVR 738

Query: 700 VDWMGNAVVPYLTPYRETEVSLRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRV 759
DW G AV+PY T YRE V+L +++L + VDLD A NVVPTRGAIVRA F RVG ++
Sbjct: 739 TDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKL 798

Query: 760 LMNLTQANGKTVPFGATATLLDTTKESSSIVGEDGQLYISGMPEKGALQVNWGKDQAQQC 819
LM LT N K +PFGA T + +SS IV ++GQ+Y+SGMP G +QV WG+++ C
Sbjct: 799 LMTLTH-NNKPLPFGAMVT--SESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHC 855

Query: 820 RVAFTLPEQQDNTGVVMANAVCR 842
+ LP + + +A CR
Sbjct: 856 VANYQLPPESQQQLLTQLSAECR 878


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3264SACTRNSFRASE348e-05 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 34.1 bits (78), Expect = 8e-05
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 76 VAPDALRHGIGKALL----EYVQQR-FPLLSLEVYQKNQSAVNFYHALGFRI 122
VA D + G+G ALL E+ ++ F L LE N SA +FY F I
Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3266OMPADOMAIN1161e-33 OMPA domain signature.
		>OMPADOMAIN#OMPA domain signature.

Length = 346

Score = 116 bits (293), Expect = 1e-33
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 11/124 (8%)

Query: 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY--PKTAVNVVGYTDSTGSHDLNMRLS 165
+ ++V F+ + ATLKP G L + L +V V+GYTD GS N LS
Sbjct: 215 FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLS 274

Query: 166 QQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGK---------AQNRRVEITL 216
++RA SV LI++G+ A +I GMG +NP+ N+ K A +RRVEI +
Sbjct: 275 ERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334

Query: 217 SPLQ 220
++
Sbjct: 335 KGIK 338


54SeKA_A3292SeKA_A3314Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3292-1203.1508042,3-diketo-l-gulonate trap transporter large
SeKA_A3293-1213.830197trap transporter solute receptor, dctp family
SeKA_A3294-2224.817068L-xylulose/3-keto-L-gulonate kinase
SeKA_A3295-2183.6016053-keto-l-gulonate-6-phosphate decarboxylase
SeKA_A3296-2173.164980putative hexulose-6-phosphate isomerase
SeKA_A3297-2143.302448L-ribulose-5-phosphate 4-epimerase
SeKA_A3298-2133.521737putative transcriptional regulator
SeKA_A3299-1133.624866conserved hypothetical protein
SeKA_A3300-2133.150816aldehyde dehydrogenase B
SeKA_A3301-2122.894742putative transcriptional regulator
SeKA_A3302-2132.625069selenocysteine-specific translation elongation
SeKA_A3303-3161.938539L-seryl-tRNA selenium transferase
SeKA_A3304-2210.591102glutathione S-transferase, C- domain
SeKA_A3305-216-1.685780pts system mannitol-specific eiicba component
SeKA_A3307013-3.853421mannitol-1-phosphate 5-dehydrogenase
SeKA_A3308222-3.079547mannitol operon repressor
SeKA_A3309119-1.694404conserved hypothetical protein
SeKA_A3310119-0.990476conserved hypothetical protein
SeKA_A33110170.015092conserved hypothetical protein
SeKA_A33120171.395250hypothetical protein
SeKA_A33130161.523154putative autotransporter
SeKA_A3314-1163.183774L-lactate permease
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3302TCRTETOQM532e-09 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 52.9 bits (127), Expect = 2e-09
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 16/106 (15%)

Query: 3 IATAGHVDHGKTTLLQAI---TGV------------NADRLPEEKKRGMTIDLGYAYWPQ 47
I HVD GKTTL +++ +G D E++RG+TI G +
Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65

Query: 48 PDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTR 93
+ +V ID PGH FL+ + + +D A+L+++ DGV AQTR
Sbjct: 66 ENTKV-NIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTR 110


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3313PF03895745e-18 Serum resistance protein DsrA.
		>PF03895#Serum resistance protein DsrA.

Length = 79

Score = 73.7 bits (181), Expect = 5e-18
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 1394 VENKMSGGIASAMAMAGLPQAYAPGANMTSIAGGTFNGESAVAIGV-SMVSESGGWVYKL 1452
+ ++ G+A+ A++ L Q G S A G + ++A+AIGV S +++ +
Sbjct: 1 LSKELQTGLANQSALSMLVQPNGVGKTSVSAAVGGYRDKTALAIGVGSRITDRFTAKAGV 60

Query: 1453 QGTSNSQGDYSAAIGAGFQW 1472
+ + G S G+++
Sbjct: 61 AFNTYN-GGMSYGASVGYEF 79


55SeKA_A3323SeKA_A3346Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A33232211.032795NAD-dependent glycerol-3-phosphate
SeKA_A33242191.685615protein-export chaperone SecB
SeKA_A33252172.342322glutaredoxin 3
SeKA_A33260111.203841rhodanese domain protein
SeKA_A3327-1111.315005hypothetical protein
SeKA_A3328-1131.5451222,3-bisphosphoglycerate-independent
SeKA_A33290140.881165M23 peptidase domain protein
SeKA_A33300140.530502divergent polysaccharide deacetylase
SeKA_A33310130.285652glycosyl transferase, group 2 family protein
SeKA_A3332012-1.634267L-threonine 3-dehydrogenase
SeKA_A3333111-3.7433382-amino-3-ketobutyrate coenzyme A ligase
SeKA_A3334218-6.486453ADP-glyceromanno-heptose 6-epimerase
SeKA_A3335224-8.591859lipopolysaccharide heptosyltransferase II
SeKA_A3336436-12.827346lipopolysaccharide heptosyltransferase I
SeKA_A3337642-15.476458O-antigen ligase
SeKA_A3338544-15.528964lipopolysaccharide
SeKA_A3339544-16.435189lipopolysaccharide core biosynthesis protein
SeKA_A3340440-15.027773lipopolysaccharide core biosynthesis protein
SeKA_A3341238-12.224330lipopolysaccharide 1,2-glucosyltransferase
SeKA_A3342031-9.463394lipopolysaccharide 1,3-galactosyltransferase
SeKA_A3343-127-8.069980lipopolysaccharide 1,6-galactosyltransferase
SeKA_A3344-220-3.857242hypothetical protein
SeKA_A3346-217-3.152817lipopolysaccharide core biosynthesis protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3323NUCEPIMERASE290.028 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 29.0 bits (65), Expect = 0.028
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 13/87 (14%)

Query: 8 MTVI---GAGSYGTALAITLARNGHQVVLWGHD---PKHIATLEHDRCNVAFLPDVPFPD 61
M + AG G ++ L GHQVV G D + +L+ R + P F
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVV--GIDNLNDYYDVSLKQARLELLAQPGFQF-- 56

Query: 62 TLHLESDLATALAASRNILVVVPSHVF 88
+ DLA + VF
Sbjct: 57 ---HKIDLADREGMTDLFASGHFERVF 80


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3324SECBCHAPRONE2342e-82 Bacterial protein-transport SecB chaperone protein ...
		>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein

signature.
Length = 170

Score = 234 bits (598), Expect = 2e-82
Identities = 91/153 (59%), Positives = 118/153 (77%), Gaps = 4/153 (2%)

Query: 3 EQNNTEMAFQIQRIYTKDVSFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRV 62
Q + QIQRIY KDVSFEAPN PH+FQ+DW+P++ DL T + Q+ DD+YEV L +
Sbjct: 12 TQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNI 71

Query: 63 TVTASLGEE--TAFLCEVQQAGIFSISGIEGTQMAHCLGAYCPNILFPYARECITSLVSR 120
+V ++ AF+CEV+QAG+F+ISG+E QMAHCL + CPN+LFPYARE ++SLV+R
Sbjct: 72 SVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNR 131

Query: 121 GTFPQLNLAPVNFDALFMNYL--QQQAGEGTEE 151
GTFP LNL+PVNFDALFM+YL Q+QA + TEE
Sbjct: 132 GTFPALNLSPVNFDALFMDYLQRQEQAEQTTEE 164


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3329RTXTOXIND477e-08 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 47.1 bits (112), Expect = 7e-08
Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 21/196 (10%)

Query: 45 RDQLKSIQADIAAKERDVRQQQQQRASLLAQLKAQEEAISAAARKLRETQSTLDQLNAQI 104
++ + + Q +L +E S + + + LD+ A+
Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216

Query: 105 DEMNASIAKLEQQKASQERNLAAQLDAAFRQGEHTGIQLILSGEESQRGQRLQAYFGYLN 164
+ A I + E ++ L + + ++ Q + ++A
Sbjct: 217 LTVLARINRYENLSRVEKSRLDD-FSSLLHKQAIAKHAVL-----EQENKYVEA-----V 265

Query: 165 QARQETIAELKQTREQVATQKAELEEKQSQQQTLLYEQRAQ-QAKLEQARNERKKTLAGL 223
+ ++L+Q ++ + K E + + + ++ Q + E K
Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE-- 323

Query: 224 ESSIQQGQQQLSELRA 239
+QQ S +RA
Sbjct: 324 -------RQQASVIRA 332


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3334NUCEPIMERASE993e-26 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 99.5 bits (248), Expect = 3e-26
Identities = 75/348 (21%), Positives = 125/348 (35%), Gaps = 67/348 (19%)

Query: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD--------------GTKFVNLVDLNI 47
+VTG AGFIG ++ K L + G ++ +DNL D +++
Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 48 ADYMDKEDFLIQIMSGEELGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------EL 100
AD + + + G E +F + +Y ++N + Y+ +
Sbjct: 62 ADR----EGMTDLF---ASGHFERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNI 109

Query: 101 LHYCLEREIP-FLYASSAATYGGRTSD-FIESREYEKPLNVYGYSKFLFDEYVRQILPEA 158
L C +I LYASS++ YG F + P+++Y +K +
Sbjct: 110 LEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169

Query: 159 NSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218
G R+F VYGP + MA F + G+S ++ KRDF Y+ D+A
Sbjct: 170 GLPATGLRFFTVYGPWG--RPDMA--LFKFTKAMLEGKSIDVY-NYGKMKRDFTYIDDIA 224

Query: 219 AVNL------------WFLESGKSG-------IFNLGTGRAESFQAVADATLAY-HKKGS 258
+ W +E+G ++N+G A +
Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284

Query: 259 IEYIPFPDKLKGRYQAFTQADLTNLRNA-GYDKPFKTVAEGVTEYMAW 305
+P G T AD L G+ P TV +GV ++ W
Sbjct: 285 KNMLPLQ---PGDVL-ETSADTKALYEVIGF-TPETTVKDGVKNFVNW 327


56SeKA_A3368SeKA_A3380Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3368-2143.016480GTP pyrophosphokinase
SeKA_A3369-1113.535025tRNA guanosine-2'-O-methyltransferase
SeKA_A3370-1143.579121ATP-dependent DNA helicase RecG
SeKA_A3371-1152.824560putative cytoplasmic protein
SeKA_A33720162.574083sodium/glutamate symporter
SeKA_A3373-1172.212203uracil-xanthine permease
SeKA_A3374-113-0.006399AsmA family protein
SeKA_A3375013-1.599874alpha-xylosidase
SeKA_A3376014-5.680389sodium:galactoside family symporter
SeKA_A3378028-8.439055*conserved hypothetical protein
SeKA_A3379227-6.895456conserved domain protein
SeKA_A3380-218-3.593339RmbA
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3370SECA412e-05 SecA protein signature.
		>SECA#SecA protein signature.

Length = 901

Score = 41.0 bits (96), Expect = 2e-05
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 291 MRLVQGDV-----GSGKTLVAALAA-LRAIAHGKQVALMAPTELLAEQHANNFRNWFEPL 344
M L + + G GKTL A L A L A+ GK V ++ + LA++ A N R FE L
Sbjct: 92 MVLNERCIAEMRTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAENNRPLFEFL 150

Query: 345 GVEVGWLAGKQKGKARQAQ 363
G+ VG A++
Sbjct: 151 GLTVGINLPGMPAPAKREA 169


57SeKA_A3402SeKA_A3424Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3402019-3.704732purine ribonucleoside efflux pump NepI
SeKA_A3403436-8.754265putative cytoplasmic protein
SeKA_A3404537-7.016971DNA-binding protein
SeKA_A3405636-6.921609conserved hypothetical protein
SeKA_A3406534-7.130382conserved hypothetical protein
SeKA_A3407635-7.319884phosphotransferase system HPr enzyme
SeKA_A3408735-7.754306fructose-1,6-bisphosphate aldolase, class II
SeKA_A3409631-6.680783putative sugar transporter
SeKA_A3410317-5.060922PTS system, galactitol-specific IIC component
SeKA_A3411-113-1.376046putative IIB component of PTS system
SeKA_A3412-1131.641994putative phosphotransferase system
SeKA_A3413-1162.802904putative GntR-family transcriptional regulator
SeKA_A3414-1204.692392conserved hypothetical protein
SeKA_A3415-2203.971809hexose phosphate transport protein
SeKA_A3416-1163.304306regulatory protein UhpC
SeKA_A3417-2131.967198sensor histidine kinase UhpB
SeKA_A3418-212-0.186240transcriptional regulatory protein UhpA
SeKA_A3419-1130.154811DeoX
SeKA_A3420-1140.379231L-fucose:H+ symporter permease
SeKA_A34210131.780819ribokinase
SeKA_A3422-1132.396559deoxyribose operon repressor
SeKA_A34230123.034974acetolactate synthase, isozyme I, small subunit
SeKA_A3424-1123.341037acetolactate synthase, large subunit,
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3402TCRTETA371e-04 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 36.7 bits (85), Expect = 1e-04
Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 13/208 (6%)

Query: 33 ITVEFLPVSLLTP----MAQDLGISEGVAGQSVTVTAFVAMFSSLFITQIIQATDR--RY 86
+ ++ + + L+ P + +DL S V + A A+ + +DR R
Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRR 73

Query: 87 IVILFAVLLTA-SCLMVSFANSFTLLLLGRACLGLALGGFWAMSASLTMRLVPARTVPKA 145
V+L ++ A +++ A +L +GR G+ G A++ + + +
Sbjct: 74 PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARH 132

Query: 146 LSVIFGAVSIALVIAAPLGSFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLP-SLPGEPSH 204
+ +V LG +GG F AAA + L + LP S GE
Sbjct: 133 FGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRP 191

Query: 205 QKQ---NMFSLLQRPGVMAGMIAIFMSF 229
++ N + + M + A+ F
Sbjct: 192 LRREALNPLASFRWARGMTVVAALMAVF 219


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3413CABNDNGRPT280.030 NodO calcium binding signature.
		>CABNDNGRPT#NodO calcium binding signature.

Length = 479

Score = 28.4 bits (63), Expect = 0.030
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 51 TVKKAVDQLVREGVLVQVQGKGTFVKKENVAYPLGEGLLSFAEALASQKINFTTSVITSR 110
++ +A Q+ RE V G F K N+ + F ++++S T V +
Sbjct: 49 SIDQAAAQITREN--VSWNGTNVFGKSANLTF-------KFLQSVSSIPSGDTGFVKFNA 99

Query: 111 LEPANRFVA 119
+ ++
Sbjct: 100 EQIEQAKLS 108


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3415TCRTETB363e-04 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 36.0 bits (83), Expect = 3e-04
Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 16/168 (9%)

Query: 49 FNIAQNDMISTYGLSMTELGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAIC 108
N++ D+ + + + F +T+ +G + +D K+ L F +I++
Sbjct: 33 LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN--- 89

Query: 109 MLGFSASMGAGSTSLFLMIAFYALSGFFQSTGGSCSYSTI----TKWTPRRKRGTFLGFW 164
F + +G S F ++ + F Q G + + + ++ P+ RG G
Sbjct: 90 --CFGSVIGFVGHSFFSLLIM---ARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144

Query: 165 NISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRF 212
+G + A+Y+ + + + P +I +I ++
Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSY---LLLIP-MITIITVPFLMKL 188


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3416TCRTETB416e-06 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 41.0 bits (96), Expect = 6e-06
Identities = 72/408 (17%), Positives = 138/408 (33%), Gaps = 60/408 (14%)

Query: 29 RHILITIWLGYALFY--FTRKSFNAAAPEILASGILSRSDIGLLATLFYITYGVSKFVSG 86
RH I IWL F+ N + P+I + + T F +T+ + V G
Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70

Query: 87 IVSDRSNARYFMGIGLIATGVVNILFGFSTSLWAFALLWALNAFFQGFGS---PVCARLL 143
+SD+ + + G+I +++ S F L + F QG G+ P ++
Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHS---FFSLLIMARFIQGAGAAAFPALVMVV 127

Query: 144 TAWY-SRTERGGWWALWNTAHNVGGALIPLVMAAVALHYGWRVGMMVAGLLAIGVGMVLC 202
A Y + RG + L + +G + P + +A + W +++ + I V
Sbjct: 128 VARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITV----- 182

Query: 203 WRLRDRPQAIGLPPVGDWRHDALEVAQQQEGAGLSRKEILAKYVLLNPYIWLLSLCYVLV 262
P + L ++ G L I+ + Y + VL
Sbjct: 183 ------PFLMKLLKKEVRIKGHFDIK----GIILMSVGIVFFMLFTTSYSISFLIVSVLS 232

Query: 263 YVV-----RAAINDWGNLYMSETLGVDLVTANTAVSMFELGGFI-----------GALVA 306
+++ R + + + + + + + + + GF+ A
Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292

Query: 307 GWGSDKLFNG----------------NRGPMNLIFAAGILLSVGSL---WLMPFASYVMQ 347
GS +F G RGP+ ++ LSV L +L+ S+ M
Sbjct: 293 EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMT 352

Query: 348 AACFFTTGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGASL 395
F G F + +I + ++ AGA + ++L
Sbjct: 353 IIIVFVLGGLSF-TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3417PF06580393e-05 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 38.7 bits (90), Expect = 3e-05
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 11/142 (7%)

Query: 365 LRPRQLDDLTLAQAIRSLLREMELESRGIVSHLDWRIDETALSESQRVTLFRVCQEGLNN 424
LR ++LA + + ++L S L + +V + Q + N
Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPM-LVQTLVEN 266

Query: 425 IVKHA-----NASAVTLQGWQQDERLMLVIEDDGSGLPPGSHQ-QGFGLTGMRERVSALG 478
+KH + L+G + + + L +E+ GS + + G GL +RER+ L
Sbjct: 267 GIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLY 326

Query: 479 G---TLTISCTHG-TRVSVSLP 496
G + +S G V +P
Sbjct: 327 GTEAQIKLSEKQGKVNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3418HTHFIS612e-13 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 61.0 bits (148), Expect = 2e-13
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDIS 61
T+ + DD +R+ Q L V + + + + D+ MPD +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61

Query: 62 GLELLSQLPK---GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHT 114
+LL ++ K + +++S ++ +A GA +L K ELI +
Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117


58SeKA_A3435SeKA_A3446Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3435-1233.675549putative potassium uptake protein TrkA
SeKA_A34360325.345488small heat shock protein IbpB
SeKA_A343744610.248256small heat shock protein IbpA
SeKA_A343955011.747915conserved hypothetical protein
SeKA_A343865212.824769conserved outer membrane protein
SeKA_A344175313.229012cytochrome c-type biogenesis protein H2
SeKA_A344275413.805437heme lyase disulfide oxidoreduCtase, cytocyhrome
SeKA_A344385615.121055cytochrome c-type biogenesis protein CcmF
SeKA_A34441318.390041ABC superfamily
SeKA_A34453235.859106heme exporter protein CcmD
SeKA_A34460174.244581ABC superfamily
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3444PF04335290.006 VirB8 type IV secretion protein
		>PF04335#VirB8 type IV secretion protein

Length = 227

Score = 29.0 bits (65), Expect = 0.006
Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 1 MNLRRKNRLWVVCAVLAGLALTTALVLYAL 30
R K WVV V LA + + AL
Sbjct: 27 AAERSKKLAWVVAGVAGALATAGVVAVAAL 56


59SeKA_A3488SeKA_A3496Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A34882290.853933UDP-N-acetylglucosamine
SeKA_A34893320.940845putative membrane protein
SeKA_A34905371.238866ATP synthase F1, epsilon subunit
SeKA_A34915391.115397ATP synthase F1, beta subunit
SeKA_A34925320.313223ATP synthase F1, gamma subunit
SeKA_A34935340.328018ATP synthase F1, alpha subunit
SeKA_A3494524-1.693713ATP synthase F1, delta subunit
SeKA_A3495324-3.505025ATP synthase F0, B subunit
SeKA_A3496317-3.645979ATP synthase F0, C subunit
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3495PYOCINKILLER270.043 Pyocin S killer protein signature.
		>PYOCINKILLER#Pyocin S killer protein signature.

Length = 617

Score = 26.7 bits (58), Expect = 0.043
Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 70 AEAQVIIEQANKRRAQILDEAKTEAEQERTKIVAQAQAEIEA 111
A+A + ANK R Q EAK +AE++ + A A A
Sbjct: 210 AKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYA 251


60SeKA_A3659SeKA_A3692Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3659124-4.222993Sea41
SeKA_A3660016-0.778322Sea40
SeKA_A3661-2190.586737acetyl esterase
SeKA_A3663-2210.955639conserved hypothetical protein
SeKA_A36620171.846771conserved hypothetical protein
SeKA_A3664-1161.547820transcriptional regulator, XRE family
SeKA_A3665-313-0.208763formate dehydrogenase accessory protein FdhE
SeKA_A3666-214-2.491576formate dehydrogenase-O, gamma subunit
SeKA_A3667-217-3.535320formate dehydrogenase-O, iron-sulfur subunit
SeKA_A3670-128-7.858175formate dehydrogenase family accessory protein
SeKA_A3671-123-6.349498hypothetical protein
SeKA_A3672-115-2.972691conserved hypothetical protein
SeKA_A3674018-2.828937hypothetical protein
SeKA_A3673017-2.147336conserved hypothetical protein
SeKA_A3675-116-1.107527hypothetical protein
SeKA_A3676-1150.021515Hsp90xo protein
SeKA_A36770130.254237conserved hypothetical protein
SeKA_A3678-1130.693726putative cytoplasmic protein
SeKA_A3679-2163.470862branched-chain amino acid transport
SeKA_A3680-2224.147883AzlC family protein
SeKA_A3681-1223.469342transcriptional regulator, XRE family
SeKA_A36820212.849636L-rhamnose 1-epimerase
SeKA_A3683-1162.122402lactaldehyde reductase
SeKA_A3684-1131.327808rhamnulose-1-phosphate aldolase
SeKA_A3685-1130.893585L-rhamnose isomerase
SeKA_A3686-114-0.767136rhamnulokinase
SeKA_A3687017-2.878340HTH-type transcriptional activator RhaS
SeKA_A3688019-5.855781HTH-type transcriptional activator RhaR
SeKA_A3689118-4.892806L-rhamnose-proton symporter
SeKA_A3690218-6.120644conserved hypothetical protein
SeKA_A3691-113-4.434158hypothetical protein
SeKA_A3692-214-3.353560hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3678PF03544345e-04 Gram-negative bacterial tonB protein
		>PF03544#Gram-negative bacterial tonB protein

Length = 243

Score = 34.2 bits (78), Expect = 5e-04
Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 12/69 (17%)

Query: 32 TPAASSQPATPAPSQTPETQSGESPAQPPAA------------KPETATQPPAAKPETPV 79
PA AP+ Q+ + P +P K P
Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 104

Query: 80 QPEVDAEEV 88
V E
Sbjct: 105 PKPVKKVEQ 113



Score = 33.4 bits (76), Expect = 0.001
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 30 EATPAASSQPATPAPSQTPETQSGESPAQPPAAKPETATQPPAAKPETPVQPEVDAE 86
+ P +P P P PE P K E P + E
Sbjct: 67 QPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVE 122



Score = 31.5 bits (71), Expect = 0.005
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 11/67 (16%)

Query: 33 PAASSQP----ATPAPSQTPETQS-------GESPAQPPAAKPETATQPPAAKPETPVQP 81
PA P P P PE + E+P KP+ +P K +
Sbjct: 57 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKR 116

Query: 82 EVDAEEV 88
+V E
Sbjct: 117 DVKPVES 123



Score = 28.4 bits (63), Expect = 0.035
Identities = 10/56 (17%), Positives = 15/56 (26%)

Query: 33 PAASSQPATPAPSQTPETQSGESPAQPPAAKPETATQPPAAKPETPVQPEVDAEEV 88
P +P AP + + P P K E + P P +
Sbjct: 80 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPA 135


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3681HTHTETR310.002 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 30.8 bits (69), Expect = 0.002
Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 9 ARSLVRERQRTGLSLAEIARRAGIAKSTL 37
A L ++ + SL EIA+ AG+ + +
Sbjct: 20 ALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48


61SeKA_A3835SeKA_A3863Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3835-118-4.403111nucleoprotein/polynucleotide-associated enzyme
SeKA_A3836-118-4.076444ribosomal large subunit pseudouridine synthase
SeKA_A3837024-3.496604conserved hypothetical protein
SeKA_A3838021-2.821395bile acid:sodium symporter
SeKA_A3839023-4.616235conserved hypothetical protein
SeKA_A3840-118-2.447370putative cytoplasmic protein
SeKA_A3842-1170.134743hypothetical protein
SeKA_A3843-1160.416857putative cytoplasmic protein
SeKA_A3844-117-3.034217tail fiber domain protein
SeKA_A3845-221-4.989966putative phage tail protein
SeKA_A3846-322-5.187175conserved hypothetical protein
SeKA_A3847-232-8.715627baseplate
SeKA_A3848-226-7.506889hypothetical protein
SeKA_A3849-220-5.424198putative inner membrane protein
SeKA_A3850-219-2.110625bactoprenol glucosyl transferase
SeKA_A38510221.189634bactoprenol-linked glucose translocase
SeKA_A38520223.447924hypothetical protein
SeKA_A38530233.921028baseplate
SeKA_A38542223.770968gp21
SeKA_A38552192.676804phage Tail Protein X
SeKA_A38560152.151212putative methyl-accepting chemotaxis protein
SeKA_A38570141.822521putative phage tail protein
SeKA_A3858016-1.630567conserved hypothetical protein
SeKA_A3859-114-2.154773conserved hypothetical protein
SeKA_A3860115-1.647718phage major tail tube protein
SeKA_A3861-117-0.090079phage tail sheath protein
SeKA_A3862424-2.608454gp12
SeKA_A3863424-3.304950putative cytoplasmic protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3835TRNSINTIMINR290.014 Translocated intimin receptor (Tir) signature.
		>TRNSINTIMINR#Translocated intimin receptor (Tir) signature.

Length = 549

Score = 28.5 bits (63), Expect = 0.014
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 13 AGLVTSKKMAKVQRTAKKSRVQAREAREAVEENKKAQLERDKQLSEQQKQAVLA 66
+G + + ++ + AK++ AR+ +AVE N +AQ + Q + +Q++ L+
Sbjct: 310 SGELKDDIVEQIAQQAKEAGEVARQ--QAVESNAQAQQRYEDQHARRQEELQLS 361


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3851TCRTETOQM270.025 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 26.7 bits (59), Expect = 0.025
Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 5 FIKYVSIGVLNTALHWAIFALCVYGFQTSQALANVTGFAVAVSFSFF 51
+ VS+G LN + A+ YG + NVT + + +
Sbjct: 460 YESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLY 506


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3856PF01540346e-04 Adhesin lipoprotein
		>PF01540#Adhesin lipoprotein

Length = 475

Score = 33.9 bits (77), Expect = 6e-04
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 136 TTQEPNIDEMLDELPDVSDSWFDELLSVVEEGMREAKEMMDEV-ADAIDDIKKTIAQAKE 194
T ++ + L+ + + SW ++++S EE + + + E+ A+ + + + KE
Sbjct: 188 TIKKDFLLSELESFKEFNTSWLEKIVSEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKE 247

Query: 195 LVKEAKALKEKCGDIVDSLKKTMSSIDALFQQPLDLQ 231
KE L EK D++ T++ ++ FQ +
Sbjct: 248 GAKELLKLSEKIQSFADTIALTITKLERKFQIDEKFK 284



Score = 32.4 bits (73), Expect = 0.002
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 142 IDEMLDELPDVSDSWFDELLSV--------------VEEGMREAKEMMDEVADAIDDIKK 187
+++++ E +V +W EL + ++ G+ E K++ +E + + K
Sbjct: 330 LEKIVSEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKNGVEELKKINNEAFELSKTVNK 389

Query: 188 TIAQAKELVKEAKALKEKCGDIVDSLKKTMSSID 221
TIA+ ++ K + KE+ + D L ID
Sbjct: 390 TIAELEKKFKIDVSFKEQLKNFADDLLDKSRQID 423



Score = 31.6 bits (71), Expect = 0.003
Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 14/94 (14%)

Query: 142 IDEMLDELPDVSDSWFDELLSV--------------VEEGMREAKEMMDEVADAIDDIKK 187
+++++ E +V +W EL + ++EG +E ++ +++ D I
Sbjct: 209 LEKIVSEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKEGAKELLKLSEKIQSFADTIAL 268

Query: 188 TIAQAKELVKEAKALKEKCGDIVDSLKKTMSSID 221
TI + + + + K++ ++ L K +
Sbjct: 269 TITKLERKFQIDEKFKKQLISTIELLNKKSVEVK 302


62SeKA_A3905SeKA_A3914Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3905338-11.944442single-stranded DNA-binding protein
SeKA_A3906545-16.958497hypothetical protein
SeKA_A3907646-17.702527hypothetical protein
SeKA_A3908425-7.098734hypothetical protein
SeKA_A3909427-8.053093conserved hypothetical protein
SeKA_A3910327-7.823423putative methyl-accepting chemotaxis protein
SeKA_A3911325-7.203691putative type-I secretion protein
SeKA_A3912325-6.616598conserved hypothetical protein
SeKA_A3913423-5.652008conserved hypothetical protein
SeKA_A3914-120-6.132563putative type-1 secretion protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3909HTHFIS260.007 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 26.3 bits (58), Expect = 0.007
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 5 QADISFSDSLRLGYERGIILMKEIKKIYPDV-VIDMSVNSAASS 47
D+ +D + + E L+ IKK PD+ V+ MS + +
Sbjct: 47 DGDLVVTD-VVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMT 89


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3912RTXTOXIND2665e-87 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 266 bits (682), Expect = 5e-87
Identities = 87/422 (20%), Positives = 174/422 (41%), Gaps = 25/422 (5%)

Query: 3 IIISLTILIIILTYFIEINSVVHGQGVITTKDNAQLISLSKGGTIQDIYVAEGDTVKKGE 62
I+ ++ IL+ ++ V G +T ++ I + +++I V EG++V+KG+
Sbjct: 63 FIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGD 122

Query: 63 LLAKVVNLDLQKEYQRYRTQKGYLDKDVNEI-------SFILDKENESGLITLDGTRSLS 115
+L K+ L E +TQ L + + S L+K E L +++S
Sbjct: 123 VLLKLT--ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVS 180

Query: 116 NKEVKANIELVHSQIRA-------KELKKTSLDSEISGLQEKLSSKEKELALLAEEINIL 168
+EV L+ Q KEL +E + +++ E + ++
Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240

Query: 169 SPLVKKGISPYTNFLNKKQAYIKVKSEINDIESSITLKKDDIELVVNDIEALNNELRLSL 228
S L+ K L ++ Y++ +E+ +S + + +I + + + + +
Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300

Query: 229 SKIISKNLQELEVVNSTLKVIEKQINEEDIYSPVDGVIYKINKSATTHGGVIQAADLLFE 288
+ + + ++ L E++ I +PV + ++ T GGV+ A+ L
Sbjct: 301 LDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQL--KVHTEGGVVTTAETLMV 358

Query: 289 IKPKVRTMLADVKILPKYRDQIYVDEAVKLDVQSIIQPKIKSYNATIDNISPDSYEENTG 348
I P+ T+ + K I V + + V++ + + NI+ D+ E+
Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRL 418

Query: 349 GTIQRYYKVIIAFDVNE----DDLRWLKPGMTVDASVITGKHSIMEYLLSPLMKGVDKAF 404
G + VII+ + N + L GM V A + TG S++ YLLSPL + V ++
Sbjct: 419 GL---VFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESL 475

Query: 405 SE 406
E
Sbjct: 476 RE 477


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3913GPOSANCHOR502e-07 Gram-positive coccus surface protein anchor signature.
		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

Length = 539

Score = 50.1 bits (119), Expect = 2e-07
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 30/190 (15%)

Query: 96 DSAQVEKKGNGKRRNKKEEEELKKQLDDAENAKK--EADKAK-EEAEKAKEAAEKALNEA 152
A+ + + + L++ LD + AKK EA+ K EE K EA+ ++L
Sbjct: 293 LEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352

Query: 153 FEVQNSSK-QMEEMLQEFLADNVAKDNLAQQSDASQQNTQA---KATQASKQNDAEKVLP 208
+ +K Q+E Q+ N + S+AS+Q+ + + +A KQ +
Sbjct: 353 LDASREAKKQLEAEHQKLEEQN-------KISEASRQSLRRDLDASREAKKQVEKALEEA 405

Query: 209 QPI-------NKNTSTGK--SNSSKNEEN-KLDAESVKEPLKVTLALAAES----NSGSK 254
NK K + K E KL+AE+ + LK LA AE +G
Sbjct: 406 NSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEA--KALKEKLAKQAEELAKLRAGKA 463

Query: 255 DDSITNFTKP 264
DS T KP
Sbjct: 464 SDSQTPDAKP 473



Score = 49.7 bits (118), Expect = 3e-07
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 98 AQVEKKGNGKRRNKKEEEELKKQLDDAENAKKEADKAKEEAEKAKEAAEKALNEAFEVQN 157
A+ +K + ++ + L++ LD + AKK+ +KA EEA A EK E E
Sbjct: 365 AEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEE--- 421

Query: 158 SSKQMEEMLQEFLADNVA-----KDNLAQQSD--ASQQNTQAKATQASKQNDAEKVLPQP 210
S K E+ E A A K+ LA+Q++ A + +A +Q K +P
Sbjct: 422 SKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGK 481

Query: 211 INKNTSTGKSNSSKNEENK 229
+ K N +K +
Sbjct: 482 GQAPQAGTKPNQNKAPMKE 500


63SeKA_A3927SeKA_A3932Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3927-2163.730460acetate--CoA ligase
SeKA_A39280173.686749formate-dependent cytochrome c nitrite
SeKA_A39292184.486149cytochrome c nitrite reductase, pentaheme
SeKA_A39301184.482230cytochrome c nitrite reductase, Fe-S protein
SeKA_A39312203.688057cytochrome c nitrite reductase, NrfD subunit
SeKA_A39322182.647333cytochrome c-type biogenesis protein CcmF
64SeKA_A3962SeKA_A3995Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3962219-4.803647oxidoreductase component
SeKA_A3963225-8.608852conserved hypothetical protein
SeKA_A3964541-14.313794hypothetical protein
SeKA_A3965338-12.647425putative inner membrane protein
SeKA_A3966136-11.526477ferrichrome transport ATP-binding protein
SeKA_A3967130-9.423237putative GerE family regulatory protein
SeKA_A3968129-8.406062AraC family regulatory protein
SeKA_A3969024-5.339117hypothetical protein
SeKA_A3970224-3.869216conserved hypothetical protein
SeKA_A3971425-1.678863acetyltransferase, gnat family
SeKA_A39728374.593991transposase
SeKA_A39737394.920060hypothetical protein
SeKA_A39758436.722652hypothetical protein
SeKA_A39768355.242553PefB
SeKA_A39778346.220762K88 fimbrial protein A
SeKA_A39789356.666700CshB porin
SeKA_A39798324.610193chaperone protein ClpE
SeKA_A39808314.553651K88 minor fimbrial subunit FaeF
SeKA_A39819303.727005putative K88 minor fimbrial subunit FaeI
SeKA_A39828304.203205minor fimbrial subunit
SeKA_A39839332.593015minor fimbrial subunit
SeKA_A3984730-0.312734conserved hypothetical protein
SeKA_A39853200.367626conserved domain protein
SeKA_A39863170.382196SrgB
SeKA_A3987114-0.350005putative acid phosphatase
SeKA_A39882180.200095ail and OmpX Homolog
SeKA_A39911170.067513*HTH-type transcriptional regulator YjdC
SeKA_A3992015-0.241604thiol:disulfide interchange protein DsbD
SeKA_A3993220-1.838808divalent-cation tolerance protein CutA
SeKA_A3994231-1.163369anaerobic C4-dicarboxylate transporter DcuA
SeKA_A3995230-1.370985aspartate ammonia-lyase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3971SACTRNSFRASE310.001 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 31.1 bits (70), Expect = 0.001
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 89 LAVDKSLHGQGVGRALVRDAGLRVIQVAETIGIRGMLVHALSDE--AREFYQRVGFVPSP 146
+AV K +GVG AL+ A I+ A+ G+++ A FY + F+
Sbjct: 95 IAVAKDYRKKGVGTALLHKA----IEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150

Query: 147 MDPMM 151
+D M+
Sbjct: 151 VDTML 155


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3976FIMREGULATRY1032e-32 Escherichia coli: P pili regulatory PapB protein si...
		>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein

signature.
Length = 104

Score = 103 bits (257), Expect = 2e-32
Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 14 VRAGELEPGAVSEEQFWLLVDISPIHSEKIILALKDYFVSGYSRKVVCERHGMSGGYLST 73
+R L PG++SE F+LL+ IS IHS+++ILA+KDY V G+SRK VCE++ M+ GY ST
Sbjct: 18 IRESVLLPGSMSEMHFFLLIGISSIHSDRVILAMKDYLVGGHSRKEVCEKYQMNNGYFST 77

Query: 74 SVNRLNFISRNVHKLAGYYS 93
++ RL ++ +LA YY+
Sbjct: 78 TLGRLIRLNALAARLAPYYT 97


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3978PF00577392e-126 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 392 bits (1009), Expect = e-126
Identities = 198/864 (22%), Positives = 330/864 (38%), Gaps = 88/864 (10%)

Query: 20 LAFAIAVALGSGTASAGEKLDMSFIQGGAGINPEVWAALNGDY-APGRYLVDLSLNGKDI 78
L A A A + +SA + F+ ++ NG PG Y VD+ LN +
Sbjct: 30 LFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYM 89

Query: 79 GKRILDVTPQDSEA---LCLSEAWLAKAGIYVSAEYFRKGYDATRQCWVLAKA-PAVKVD 134
R + DSE CL+ A LA G+ ++ A C L
Sbjct: 90 ATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTAS-VSGMNLLADDACVPLTSMIHDATAQ 148

Query: 135 FDVATQSLSLAIPQKGLVKMPENV----EWDYGTEAFRMNYNANANSGRYN---TSAFGS 187
DV Q L+L IPQ + WD G A +NYN + NS + S +
Sbjct: 149 LDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAY 208

Query: 188 ADLKA--NIGRWVVSSSATASTGDGGSNEATINMFT-----ATRAIRSLSADLAVGKTST 240
+L++ NIG W + + T S S+ + N + R I L + L +G T
Sbjct: 209 LNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYT 268

Query: 241 GDSLLGSTGTYGVSLSRNNSMKPGNL-GYTPVFSGIANGPSRVTLTQNGRTLYSGMMPSG 299
+ G L+ +++M P + G+ PV GIA G ++VT+ QNG +Y+ +P G
Sbjct: 269 QGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPG 328

Query: 300 PFSVTDVPLYS-SGDVTMTVTGDDGREQTQVFPLSVMAGQLSPGQHEFSVAAGIPDDDSD 358
PF++ D+ SGD+ +T+ DG Q P S + G +S+ AG +
Sbjct: 329 PFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNA 388

Query: 359 LEGG--VFAASYGYGL-DGLTLRTGGVFNQDWQGASAGAVLGLGYLGALSADGAYATAK- 414
+ F ++ +GL G T+ G ++ + G +G LGALS D A +
Sbjct: 389 QQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTL 448

Query: 415 YRDGSRCGNKVKLAWSKQVALTNTGLR-VSWSHQSEEYEDMSSF---------------- 457
D G V+ ++K + + T ++ V + + + Y + +
Sbjct: 449 PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGV 508

Query: 458 --NPAETWLQQNQGRRTRDEWNAGISQPVGGLFSLSASGWQRSYYPASTTGSYRYADDNG 515
+ N R + ++Q +G +L SG ++Y+ +
Sbjct: 509 IQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYW-----------GTSN 557

Query: 516 KETGVTGTLSTQIKSVSLSLGWSGSRNMNGENTW-SASASVSVPF--------TLFERKY 566
+ L+T + ++ +L +S ++N + + +V++PF R
Sbjct: 558 VDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 617

Query: 567 SSSTTVSTGKDGGTGVSTGLSGAL--NDRFSYGLGGGRDSDGGVSS----YLNAAYSGDR 620
S+S ++S +G G+ G L ++ SY + G G +S Y Y G
Sbjct: 618 SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGY 677

Query: 621 ANLNGTVNHSSGSGTSGSVSASGSVLAVPAARDIMFSRTTGDTVAVVSVKDTPGVKVMSG 680
N N +HS SG VLA + + DTV +V KV +
Sbjct: 678 GNANIGYSHSDDI-KQLYYGVSGGVLAHANG--VTLGQPLNDTVVLVKAPGAKDAKVENQ 734

Query: 681 NETS-DSDGNLVVP-LNSYDWNTVTIDAGTLPLDTELSTTSRKVVPTDRAVVWLPFDALK 738
D G V+P Y N V +D TL + +L VVPT A+V F A
Sbjct: 735 TGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARV 794

Query: 739 VHRYLLQVRMPDGAFVPGGTWARDSNNTPLGFVANNGVLMINAVDRPGDITL-------G 791
+ L+ + + +P G ++ G VA+NG + ++ + G + +
Sbjct: 795 GIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENA 853

Query: 792 QCRI----PAAKLQETAKLQEITC 811
C P Q+ C
Sbjct: 854 HCVANYQLPPESQQQLLTQLSAEC 877


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3991HTHTETR461e-08 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 46.2 bits (109), Expect = 1e-08
Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 15/189 (7%)

Query: 3 REDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILYDALRYLSQQVDI 62
R+ IL AL+L QG++ T+L +A+ + + DK + + +
Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72

Query: 63 WRRQLLLDETLSAEQKLLARYSA-LSECVSNNRYPGCLFIAACTFYPDPTH----PIHQL 117
+ L L V+ R + F+ + Q
Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRL---LMEIIFHKCEFVGEMAVVQQA 129

Query: 118 ANQQKRAAHDFTHELLTTL----EID---DPAMVARQMELVLEGCLSRMLVNRSQADVDT 170
++D + L + A M + G + L D+
Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189

Query: 171 AQRLAEDIL 179
R IL
Sbjct: 190 EARDYVAIL 198


65SeKA_A4021SeKA_A4036Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4021-1113.102411arginine-binding periplasmic protein 2
SeKA_A4026-1133.619653***putative iron-sulfur cluster binding protein
SeKA_A4025-2153.697133YjeF family protein
SeKA_A4027-3172.552579conserved hypothetical protein
SeKA_A4028-2142.927204N-acetylmuramoyl-L-alanine amidase AmiB
SeKA_A40290162.310530DNA mismatch repair protein MutL
SeKA_A40301171.241399tRNA delta(2)-isopentenylpyrophosphate
SeKA_A40314231.118493RNA chaperone Hfq
SeKA_A40324220.961360GTP-binding protein HflX
SeKA_A40334211.344730HflK protein
SeKA_A40344191.216529HflC protein
SeKA_A40352170.211061conserved hypothetical protein
SeKA_A40362140.364980adenylosuccinate synthetase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4028PF03544290.033 Gram-negative bacterial tonB protein
		>PF03544#Gram-negative bacterial tonB protein

Length = 243

Score = 28.8 bits (64), Expect = 0.033
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 130 PPPPPPVVAKRVESAPRPTEPARNPFKSSDDRLTGVTSSNTVTRPAARASAGAGDKVVIA 189
P P P K+VE R +P + S + + RP + + A K V +
Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFE-------NTAPARPTSSTATAATSKPVTS 152

Query: 190 IDAG 193
+ +G
Sbjct: 153 VASG 156


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4029ALARACEMASE300.028 Alanine racemase signature.
		>ALARACEMASE#Alanine racemase signature.

Length = 356

Score = 30.1 bits (68), Expect = 0.028
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 31 VENSLDAGATRVDIDIER---GGAKLIR-IRDNGCGIKKEELALALARHATSKIASLDDL 86
++ SLD A + ++ I R A++ ++ N G E + A+ + +L++
Sbjct: 5 IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEA 64

Query: 87 EAIISLGFRGEAL----------ASISSVSRLTLTSRTAEQAEAWQAYAEGRDMDVTVK- 135
+ G++G L I RLT + Q +A Q +D+ +K
Sbjct: 65 ITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKV 124

Query: 136 -PAAHPVGTTLEVLDLFYNTPARRKFMRTEK--TEFNHIDE 173
+ +G + + + + + F +
Sbjct: 125 NSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEH 165


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4032SECA330.002 SecA protein signature.
		>SECA#SecA protein signature.

Length = 901

Score = 33.3 bits (76), Expect = 0.002
Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 282 HVVDAADVRVQENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENK-PIRV 340
++D +DV N + IDA+ P + ++ + + R+ D + PI
Sbjct: 665 ELLDVSDVSETINSIREDVFKATIDAYIPPQSL--EEMWDIPGLQERLKNDFDLDLPIAE 722

Query: 341 WLSAQSGVGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSV 400
WL + + L + + + + + + R + LQ ++ W E ++
Sbjct: 723 WLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAM 782

Query: 401 SLQVRMPIVDWRRLCKQEPALIEY 424
+R I R +++P EY
Sbjct: 783 D-YLRQGIH-LRGYAQKDP-KQEY 803


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4034PYOCINKILLER290.030 Pyocin S killer protein signature.
		>PYOCINKILLER#Pyocin S killer protein signature.

Length = 617

Score = 29.0 bits (64), Expect = 0.030
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 225 NRMRAEREAVARRHRSQGQEEAEKLRAAADYEVTK---TLAEAERQGRIMRGEGDAEAAK 281
N+ R + A A+R + + +RAA Y + +A A +G I +G A A+
Sbjct: 220 NKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQ 279

Query: 282 LFADA 286
+DA
Sbjct: 280 AISDA 284


66SeKA_A4138SeKA_A4167Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4138133-9.721326gluconate 5-dehydrogenase
SeKA_A4139338-11.966464L-idonate 5-dehydrogenase
SeKA_A4140343-13.253445shikimate kinase
SeKA_A4141344-13.473816conserved hypothetical protein
SeKA_A4143655-17.263164*integrase
SeKA_A4144962-19.449127conserved hypothetical protein
SeKA_A4145961-18.528504hypothetical protein
SeKA_A41461162-19.041343hypothetical protein
SeKA_A41481159-17.985978hypothetical protein
SeKA_A41501160-17.480830conserved hypothetical protein
SeKA_A41511060-17.371384hypothetical protein
SeKA_A41521056-16.783942conserved hypothetical protein
SeKA_A4153955-16.148826DNA sulfur modification protein DndD
SeKA_A4154854-14.243316putative sulfurtransferase DndC
SeKA_A4155338-8.947775cysteine desulfurase DndA
SeKA_A4156031-7.395104restriction endonuclease family
SeKA_A4157024-4.933133transposase subfamily
SeKA_A4161024-4.938598conserved hypothetical protein
SeKA_A4162025-6.127137hypothetical protein
SeKA_A4163023-5.646769putative methionine biosynthesis protein MetW
SeKA_A4164134-9.999486protein YjhX 2
SeKA_A4165133-8.511927hypothetical protein
SeKA_A4166326-5.805788conserved hypothetical protein
SeKA_A4167222-4.437503putative cytoplasmic protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4138DHBDHDRGNASE1401e-42 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 140 bits (353), Expect = 1e-42
Identities = 85/256 (33%), Positives = 133/256 (51%), Gaps = 8/256 (3%)

Query: 7 LAGKNILITGAAQGIGYLLATGLGRYGARIIVNDITPERAETAVTKLQQEGIKAIAAPFN 66
+ GK ITGAAQGIG +A L GA I D PE+ E V+ L+ E A A P +
Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

Query: 67 VTHKQDIEAAVEHIEKDIGVIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQ 126
V I+ IE+++G ID+L+N AG+ R ++EW +VN T VF S+
Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125

Query: 127 AVTRRMVARQAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGI 186
+V++ M+ R++G ++ + S + + R ++ YA+SK A M T+ + +ELA +NI+ N +
Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

Query: 187 APGYFKTEMTKALVEDE--------AFTSWLCKRTPAARWGDPQELIGAAVFLSSKASDF 238
+PG +T+M +L DE P + P ++ A +FL S +
Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245

Query: 239 VNGHLLFVDGGMLVAV 254
+ H L VDGG + V
Sbjct: 246 ITMHNLCVDGGATLGV 261


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4153BONTOXILYSIN300.040 Bontoxilysin signature.
		>BONTOXILYSIN#Bontoxilysin signature.

Length = 1196

Score = 29.9 bits (67), Expect = 0.040
Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 301 QHVAIKA--EKQALLEKNYRIFNDAESLLQKQKEQLLNMLSDKVDSIELSDLKMKFDEAQ 358
Q +K + + I D L+++ E+ LS++ I ++ + ++A
Sbjct: 694 QESLVKQIVQNKFTDLSKASIPPDTLKLIRETTEKTFIDLSNES-QISMNRVDNFLNKAS 752

Query: 359 IIEKEKHTVDCYI--NTDPLYFFDLNSRIHQDKNSAVNLLLVKKKI--EEEIILIDRKIN 414
I C + P + + I+ + I E+ ILI+
Sbjct: 753 I---------CVFVEDIYPKFISYMEKYINNINIKTREFIQRCTNINDNEKSILINSYTF 803

Query: 415 TIPTF-----ESVKGLFSEYAKQEEKLRSVRKEKEILLVSLEEIDNEIKSNETEYNTLLI 469
F +S+K F+ +Q K ++LL + + ++ I + + NTL+
Sbjct: 804 KTIDFKFLDIQSIKNFFNSQVEQVMKEIL--SPYQLLLFASKGPNSNIIEDISGKNTLIQ 861

Query: 470 SSNSAHFEQKRQSQIINHIDTLKEIIISFNK 500
+ S + + ++ + E I NK
Sbjct: 862 YTESIELVYGVNGESL-YLKSPNETIKFSNK 891


67SeKA_A4240SeKA_A4266Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4240220-2.223002phosphopentomutase
SeKA_A4241322-4.357645purine nucleoside phosphorylase
SeKA_A4242427-6.282424putative outer membrane protein
SeKA_A4243222-4.311409fimbrial usher protein
SeKA_A4244122-3.510295pili assembly chaperone
SeKA_A4245-116-1.179582putative outer membrane protein
SeKA_A4246-3121.451849putative outer membrane protein
SeKA_A4247-2151.816864hypothetical protein
SeKA_A4248-1183.424416lipoate-protein ligase A
SeKA_A4250-1183.528635protein smp precursor
SeKA_A4251-1193.442288phosphoserine phosphatase SerB
SeKA_A4252-1183.339644DNA repair protein RadA
SeKA_A4253-2162.926117nicotinamide-nucleotide adenylyltransferase
SeKA_A4254-1173.728278ABC transporter, ATP-binding protein
SeKA_A4255-2152.842674soluble lytic murein transglycosylase
SeKA_A42560152.499443trp operon repressor
SeKA_A4257-1153.190163conserved hypothetical protein
SeKA_A4258-2142.357085phosphoglycerate mutase family protein
SeKA_A4259-3121.282746right origin-binding protein
SeKA_A4260-2140.855727protein CreA
SeKA_A4261012-1.214620transcriptional regulatory protein CreB
SeKA_A4262114-2.211398sensor protein CreC
SeKA_A4263318-3.746814inner membrane protein CreD
SeKA_A4264321-5.271965putative major fimbrial subunit
SeKA_A4265219-5.518125putative fimbrial subunit
SeKA_A4266118-5.115494outer membrane usher protein SfmD
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4243PF00577378e-120 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 378 bits (971), Expect = e-120
Identities = 170/874 (19%), Positives = 311/874 (35%), Gaps = 86/874 (9%)

Query: 1 MKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISPNVAQYFSRAPRFLPGS 60
K+ +++ + C+ A + + EL F+ L + F PG+
Sbjct: 19 RKHRLAGFFVRLFVACAFAAQAPLS-SAELYFNPRFLADDPQAVADLSRFENGQELPPGT 77

Query: 61 HTVMVKINGVNRGSLVARFDTE-----GQLCVDDDFLSASGL-----VPLNISAKETCHS 110
+ V + +N + F+T C+ L++ GL +N+ A + C
Sbjct: 78 YRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVP 137

Query: 111 LQEDYPSAIITPLPNSESLELFVPAQALDN---NLLSLNNVIKGGTAGLFNYNLYASRSE 167
L A + L L +P + N + G AGL NYN + +
Sbjct: 138 LTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQ 197

Query: 168 SSGSDSRNYAQANLEAGLNFAEWTLRSRYMLTNNDGEYRTD------SLYTYAEHVFQAQ 221
+ + +YA NL++GLN W LR + N + + + T+ E
Sbjct: 198 NRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPL 257

Query: 222 KMRAQVGQINVNSSLFSGAPINGVQLIPEQGLAQDTQ---GVTINGIARTHQARVEVRQS 278
+ R +G +F G G QL + + D+Q I+GIAR A+V ++Q+
Sbjct: 258 RSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARG-TAQVTIKQN 316

Query: 279 GQIIYTAPVNAGAFTLENVPIIRSNTDLNVSVVETDGSTTTFTVP--AVSFNLRELTPAG 336
G IY + V G FT+ ++ ++ DL V++ E DGST FTVP +V RE
Sbjct: 317 GYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQRE-GHTR 375

Query: 337 LTMSIGRVRDTTSDYSLPWIYNISDGWKLSENWLAQASGVLAQDYQAAGGMLQWLPTNKW 396
+++ G R + P + + L W LA Y+A +
Sbjct: 376 YSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALG 435

Query: 397 TFSGSMLGSKASF--GESLQGAKSELRASMAL-PGEISLDVSTARYS-DGYRELTDALN- 451
S M + ++ G + +L ++ + RYS GY D
Sbjct: 436 ALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYS 495

Query: 452 ------------------------KDAYEYQSSSSANIAWNHNLIGTFSLGYYTYQATDN 487
AY + + T L
Sbjct: 496 RMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGT 555

Query: 488 NNDSRSIMASWGKTFKYASITANWQHAVNQDDENHNGSNDDDMFYINISIPLGEQRVGAY 547
+N A F+ + T ++ +N D M +N++IP
Sbjct: 556 SNVDEQFQAGLNTAFEDINWTLSYSLT-----KNAWQKGRDQMLALNVNIPFSHWLRSDS 610

Query: 548 M-------------RNQGDKTTYGLQNNGSLSKD--THYYISA---DRDAKNQQNSFNGN 589
+ + T G+L +D Y + N ++
Sbjct: 611 KSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYAT 670

Query: 590 LNSNLHYTQLSVGGGTDGDNYRNYNATFSGGIAAHEHGITFSPYTIKNTFAIARLSEPES 649
LN Y + G + D+ + SGG+ AH +G+T + +T + +
Sbjct: 671 LNYRGGYGNAN-IGYSHSDDIKQLYYGVSGGVLAHANGVTLGQP-LNDTVVLVKAPG-AK 727

Query: 650 GIEIATPQGRIWTDRWGQAVIPGLTEWRKSRVEVNANTLPKSMELANGIKNITVAHSAFR 709
++ G + TD G AV+P TE+R++RV ++ NTL +++L N + N+ A
Sbjct: 728 DAKVENQTG-VRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIV 786

Query: 710 VLDFNVLNTRRVMLTVKRPDGSWLPKDTSIVDEKNNYLVSAVDSGRVFITDVGDNPALYA 769
+F ++++T+ + LP + E + D+G+V+++ + +
Sbjct: 787 RAEFKARVGIKLLMTL-THNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQV 845

Query: 770 A-DDDMNRLCRIHYTLQKTQDKEAFYETAKGVCQ 802
++ N C +Y L ++ + + C+
Sbjct: 846 KWGEEENAHCVANYQLPPESQQQLLTQLS-AECR 878


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4253LPSBIOSNTHSS347e-04 Lipopolysaccharide core biosynthesis protein signat...
		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein

signature.
Length = 166

Score = 33.6 bits (77), Expect = 7e-04
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 71 GKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRGLFEDSAMSQQPTVSDRLRWLLQT 130
G F P+ GH+ +I+R C D++++ + + + +F +V +RL + +
Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAVL-RNPNKQPMF---------SVQERLEQIAKA 56

Query: 131 FKYQKNIRIHAFN 143
+ N ++ +F
Sbjct: 57 IAHLPNAQVDSFE 69


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4261HTHFIS935e-24 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 93.0 bits (231), Expect = 5e-24
Identities = 32/139 (23%), Positives = 58/139 (41%)

Query: 1 MQQPQVWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDI 60
M + + +D+ I L L G+ V + + D V+ DV +PD
Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

Query: 61 SGFELCRQLLEHHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLR 120
+ F+L ++ + P LP+L ++A++ + + E GA DY+ KPF E+ + L
Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

Query: 121 RVKKFAAPSPVVRTGHFEL 139
K+ + L
Sbjct: 121 EPKRRPSKLEDDSQDGMPL 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4266PF005777670.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 767 bits (1982), Expect = 0.0
Identities = 333/877 (37%), Positives = 488/877 (55%), Gaps = 70/877 (7%)

Query: 14 LSFLFICCS----IKPALAHDHFNPLSLENDEPGVENVDLSVFEKGGQAE-GTYNVDIYI 68
LF+ C+ + A +FNP L +D DLS FE G + GTY VDIY+
Sbjct: 27 FVRLFVACAFAAQAPLSSAELYFNPRFLADD--PQAVADLSRFENGQELPPGTYRVDIYL 84

Query: 69 NNTSVETKNIAFKNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELKN-DPNGCTDL-SL 126
NN + T+++ F + D++ + PCL+ QL G+ T + + + C L S+
Sbjct: 85 NNGYMATRDVTFN---TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSM 141

Query: 127 LAGTVAKFNVIGNRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYSFTGSQDHDIDE 186
+ A+ +V RL+L IPQ + R ++P WD GINA LLNY+F+G+ +
Sbjct: 142 IHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQN-RI 200

Query: 187 NRTENSEYANLRPGINIGAWRFRNYSTW-----NHDSDGQNSWDSAYTYVSRDIEFLKGQ 241
+ Y NL+ G+NIGAWR R+ +TW + S +N W T++ RDI L+ +
Sbjct: 201 GGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSR 260

Query: 242 LIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYTI 301
L G+ T D+FD I+F+G Q++SDD+MLPDS +GFAPVI G+A+ +AQVT++QNGY I
Sbjct: 261 LTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDI 320

Query: 302 YKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTV 361
Y + VP GPF IND+Y G SGDL VTIKE+DGS Q F VPY+SVP+LQREGH +Y +T
Sbjct: 321 YNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITA 380

Query: 362 GRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLSNDVYHAALIGTGLNLGDLGAL 421
G RS + + F + T L+GL G T YGG + D Y A G G N+G LGAL
Sbjct: 381 GEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLA---DRYRAFNFGIGKNMGALGAL 437

Query: 422 SLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDVL 481
S+D+T + S + GQS R Y+K + +GTN + GYRYST Y+ D
Sbjct: 438 SVDMTQANSTLPDD----SQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTT 493

Query: 482 DTYSD--------------------NSHYDHVRNRTDLSLSQDII-YGSISLTLYNEDYW 520
+ + + + R + L+++Q + ++ L+ ++ YW
Sbjct: 494 YSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYW 553

Query: 521 N-DTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSNDQQISINISIPLDA 579
G N + ++++ ++YS T NA DQ +++N++IP
Sbjct: 554 GTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKG---------RDQMLALNVNIPFSH 604

Query: 580 FMPS--------TYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSS---QEKA 628
++ S A+Y+M+ +G T+ G+ GT L NLS+SVQ GY+
Sbjct: 605 WLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSG 664

Query: 629 TSGNVSATYNGTYADINGGYSYDNHMRRLNYGVQGGVLLHRNGLTLSQPMDDTIILVKAP 688
++G + Y G Y + N GYS+ + +++L YGV GGVL H NG+TL QP++DT++LVKAP
Sbjct: 665 STGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAP 724

Query: 689 GAAGVPVNNETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGA 748
GA V N+TGV TD+RGYAV+PYA+ Y N V+LDT + N++L + +VPTRGA
Sbjct: 725 GAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGA 784

Query: 749 VVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDTGQAWLTGLEKQG 808
+VRAE+K +G K LM LT NN P+PFGA V+S + S V D GQ +L+G+ G
Sbjct: 785 IVRAEFKARVGIKLLMTLTH-NNKPLPFGAMVTSES--SQSSGIVADNGQVYLSGMPLAG 841

Query: 809 RLLVKWGPTAADRCQVSYRIPSSPSASGVEILHEQCQ 845
++ VKWG C +Y++P + L +C+
Sbjct: 842 KVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878


68SeKA_A4282SeKA_A4288Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4282223-1.499145positive regulator for sigma H
SeKA_A4283120-4.064583protein YaaI
SeKA_A4284022-4.840121hypothetical protein
SeKA_A4285018-4.102655chaperone protein DnaK
SeKA_A4286021-7.326321chaperone protein DnaJ
SeKA_A4287120-6.937473hypothetical protein
SeKA_A4288-112-3.153120putative transcriptional regulator, LysR family
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4285SHAPEPROTEIN1413e-39 Bacterial cell shape determinant MreB/Mbl protein s...
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

signature.
Length = 347

Score = 141 bits (357), Expect = 3e-39
Identities = 84/388 (21%), Positives = 152/388 (39%), Gaps = 86/388 (22%)

Query: 5 IGIDLGTTNSCVAIMDGTQARVLENAEGDRTTPSIIAYTQDGET------LVGQPAKRQA 58
+ IDLGT N+ + + Q VL PS++A QD VG AK+
Sbjct: 13 LSIDLGTANTLIYVKG--QGIVLNE-------PSVVAIRQDRAGSPKSVAAVGHDAKQML 63

Query: 59 VTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIGADNGDAWLDVKGQKMAPPQISAE 118
P N + AI+ +K +A ++ +
Sbjct: 64 GRTPGN-IAAIR---------------------------------PMKDGVIADFFVTEK 89

Query: 119 VLKK-MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
+L+ +K+ + P ++ VP +R+A +++ + AG +I EP AAA+
Sbjct: 90 MLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAI 149

Query: 178 AYGL--DKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTR 235
GL + G+ V D+GGGT ++++I ++ V + +GG+ FD
Sbjct: 150 GAGLPVSEATGS---MVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEA 197

Query: 236 LINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA----QQTDVNLPYITADAT 291
+INY+ + G + AE+ K E+ SA + ++ +
Sbjct: 198 IINYVRRNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEG 244

Query: 292 GPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQD-AGLSVSDIND--VILVGGQTRMPM 348
P+ + + LE+L E + + + VAL+ SDI++ ++L GG +
Sbjct: 245 VPRGFTLN-SNEILEALQEP-LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRN 302

Query: 349 VQKKVAEFFGKEPRKDVNPDEAVAIGAA 376
+ + + E G +P VA G
Sbjct: 303 LDRLLMEETGIPVVVAEDPLTCVARGGG 330


69SeKA_A4300SeKA_A4309Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4300128-3.065987fimbrial subunit
SeKA_A4301-128-4.795838fimbrial chaperone
SeKA_A4302-129-6.844215BcfH
SeKA_A4303340-12.396511conserved hypothetical protein
SeKA_A4304124-8.047002conserved hypothetical protein
SeKA_A4305019-6.491133hypothetical protein
SeKA_A4307-116-5.109023conserved hypothetical protein
SeKA_A4308-114-3.226451hypothetical protein
SeKA_A4309-113-3.106408conserved hypothetical protein
70SeKA_A4327SeKA_A4341Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4327-1243.727774Non-specific ribonucleoside hydrolase RihC
SeKA_A4328-2222.182539transcriptional regulatory protein CitB
SeKA_A4329-1212.601715sensor kinase DpiB
SeKA_A4330-1254.960469oxaloacetate decarboxylase beta chain
SeKA_A4331-2183.153120oxaloacetate decarboxylase alpha subunit
SeKA_A4332-1120.343134conserved domain protein
SeKA_A4333-1110.429156citrate-sodium symporter
SeKA_A43340111.755346[citrate (pro-3S)-lyase] ligase
SeKA_A4335-1122.287068citrate lyase acyl carrier protein
SeKA_A43360121.722658citrate (pro-3S)-lyase, beta subunit
SeKA_A43370120.687241citrate lyase, alpha subunit
SeKA_A4338-1120.650857holo-ACP synthase CitX
SeKA_A43390223.002574triphosphoribosyl-dephospho-CoA synthase CitG
SeKA_A43400253.202370dihydrodipicolinate reductase
SeKA_A43411273.159110hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4328HTHFIS691e-15 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 68.7 bits (168), Expect = 1e-15
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 1 MDSITTLIVEDEPMLAEILVDTIKLFPQFSIIGIADKLESAKKQIRLYQPQLILLDNFLP 60
M T L+ +D+ + +L L + I + + I L++ D +P
Sbjct: 1 MTGATILVADDDAAIRTVLNQA--LSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58

Query: 61 DGKGIDLIRHTISANYTGRIIFITADNHMDTISDALRMGVFDYLIKPVHYQRLQHTLERF 120
D DL+ A ++ ++A N T A G +DYL KP L + R
Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

Query: 121 TRYRSSLRSSEQANQTHVDAL 141
S + + L
Sbjct: 119 LAEPKRRPSKLEDDSQDGMPL 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4329CARBMTKINASE300.020 Bacterial carbamate kinase signature.
		>CARBMTKINASE#Bacterial carbamate kinase signature.

Length = 314

Score = 30.2 bits (68), Expect = 0.020
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 104 DATYITVGNEKGQRLYHVNPDEIGKYMEGGDSDDALYNAKSYVSVRKGSLGSSLRGKSPI 163
+ + G EK Q L V +E+ KY E G + GS+G +
Sbjct: 238 NGAALYYGTEKEQWLREVKVEELRKYYEEG-------------HFKAGSMGPKVLAAIRF 284

Query: 164 QDSTGKVIGIVSVGYTLEQLD 184
+ G+ I + +E L+
Sbjct: 285 IEWGGERAIIAHLEKAVEALE 305


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4331RTXTOXIND330.002 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 33.3 bits (76), Expect = 0.002
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 508 ASSAPVQAAAPA-GTGTP------VSAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMET 560
+ V+ A A G T + + ++I EG++V +GDVLL L A+ E
Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134

Query: 561 EIRAAQA 567
+ Q+
Sbjct: 135 DTLKTQS 141



Score = 29.4 bits (66), Expect = 0.048
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 535 KVIATEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKSGDAVSVGDTLMTL 590
V G+ G EI+ + V+ I VK G++V GD L+ L
Sbjct: 82 IVATANGKLTHSGRSK----------EIKPIENSIVKEIIVKEGESVRKGDVLLKL 127


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4334LPSBIOSNTHSS381e-05 Lipopolysaccharide core biosynthesis protein signat...
		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein

signature.
Length = 166

Score = 38.3 bits (89), Expect = 1e-05
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 154 NPFTLGHRYLVEQAAAACDWLHLFVVKEDAS--FFSYTDRWALIEQGIAGIDNVTLHSGS 211
+P T GH ++E+ D +++ V++ FS +R I + IA + N + S
Sbjct: 10 DPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPNAQVDSFE 69

Query: 212 AYMISRATFPGYFLKEKGV--VDDCHCQIDLQLFREHLAPAL 251
++ A +G+ + D ++ + + LA L
Sbjct: 70 GLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDL 111


71SeKA_A4377SeKA_A4387Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4377-2173.930764L-ribulose-5-phosphate 4-epimerase
SeKA_A43780174.741470L-arabinose isomerase
SeKA_A43791164.845559L-ribulokinase
SeKA_A43802173.941871arabinose operon regulatory protein
SeKA_A43811184.388912inner membrane protein YabI
SeKA_A43821174.328490thiamine ABC transporter, ATP-binding protein
SeKA_A43831193.733963thiamine/thiamine pyrophosphate ABC transporter,
SeKA_A4384-1193.419362thiamin/thiamin pyrophosphate ABC transporter,
SeKA_A4386-2193.575877putative lipoprotein
SeKA_A4387-2213.096451HTH-type transcriptional regulator SgrR
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4383PF06580300.024 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 29.8 bits (67), Expect = 0.024
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 4 RRQPLIPGWLIPGLCAAALMITVSLAAFLALWLNAPSGAWSTIWRDSYLWHVVRFSFWQA 63
R GWL + L + + +W A + W + +++
Sbjct: 60 RSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLL---AFINTKPVAFTLPL 116

Query: 64 FLSAVLSVVPAVFLARALY 82
LS + +VV F+ LY
Sbjct: 117 ALSIIFNVVVVTFMWSLLY 135


72SeKA_A4404SeKA_A4409Y        NNGenomic Island
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4404-1123.092893cell division protein FtsL
SeKA_A4405-1133.042980peptidoglycan synthetase FtsI
SeKA_A4406-1134.013657UDP-N-acetylmuramoylalanyl-D-glutamate--2,
SeKA_A4407-1143.574731UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
SeKA_A4408-2153.375388phospho-N-acetylmuramoyl-pentapeptide-
SeKA_A4409-2143.297497UDP-N-acetylmuramoylalanine--D-glutamate ligase
73SeKA_A4435SeKA_A4451Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A44352291.287227Na+/galactoside symporter
SeKA_A44364371.908114hypothetical protein
SeKA_A44374371.714034aromatic amino acid transport protein AroP
SeKA_A44385391.654614transcriptional regulator, GntR family
SeKA_A44394391.698870pyruvate dehydrogenase (acetyl-transferring),
SeKA_A44400222.504817dihydrolipoyllysine-residue acetyltransferase
SeKA_A44410233.282915dihydrolipoamide dehydrogenase
SeKA_A4442-2162.190429hypothetical protein
SeKA_A4443-2131.741219probable secreted protein
SeKA_A4444-2131.251379probable secreted protein
SeKA_A4445-2120.948247conserved hypothetical protein
SeKA_A4446-212-0.583989aconitate hydratase 2
SeKA_A4447-116-3.527418conserved hypothetical protein
SeKA_A4448019-3.551322hypothetical protein
SeKA_A4449-120-3.429340hypothetical protein
SeKA_A4450-120-2.965435conserved hypothetical protein
SeKA_A4451-123-4.183529hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4440RTXTOXIND364e-04 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 36.0 bits (83), Expect = 4e-04
Identities = 40/281 (14%), Positives = 85/281 (30%), Gaps = 32/281 (11%)

Query: 26 DKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVSVGDKTETGALIMIFDSAEGAADAAP 85
+ V +T G S E+ + +VKEI V G+ G +++ + AD
Sbjct: 81 EIVATANGKLTHSGR--SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138

Query: 86 AKA--------EEKKEAAPAAAPAAAAAKDVHVPDIGSDEVEVTEVMVKVG------DTV 131
++ + + + + + + V EV+ T
Sbjct: 139 TQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198

Query: 132 EAEQSLITVEGDKASMEVPAPFAGTVKEIKVNTGDKVSTGSLIMVFEVAGEAPAAAPAKA 191
+ ++ + DK E A + ++ +K + A +
Sbjct: 199 QNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHK-QAIAKHAVLEQ 257

Query: 192 EAAPAAAAPAAATGVKDVNVPDIGGDEV-------------EVTEVMVKVGDKVAA-EQS 237
E A + + E+ + + + D +
Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317

Query: 238 LITVEGDKASMEVPAPFAGTVKEIKIST-GDKVKTGSLIMV 277
L E + + + AP + V+++K+ T G V T +MV
Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358



Score = 29.4 bits (66), Expect = 0.042
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 230 DKVAAEQSLITVEGDKASMEVPAPFAGTVKEIKISTGDKVKTGSLIMVFEVEGAAPAAAP 289
+ VA +T G S E+ VKEI + G+ V+ G ++ ++ A
Sbjct: 81 EIVATANGKLTHSGR--SKEIKPIENSIVKEIIVKEGESVRKGDVL--LKLTALGAEADT 136

Query: 290 AKQEAAAPAPAAKAEKPAAPAAKAE 314
K +++ + + + E
Sbjct: 137 LKTQSSLLQARLEQTRYQILSRSIE 161


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4445IGASERPTASE310.012 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 31.2 bits (70), Expect = 0.012
Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 1/141 (0%)

Query: 345 VPYPNNTVAQRFHPTNVSGGLSATQQAPVSRDSQRQAAMTQFQQRSHTSPANLSGETSRD 404
+ PNN A + + ++ +APV + + T + + S +
Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT-ETVAENSKQESKTVEKNE 1055

Query: 405 RQRKAASQQLNQIAQRNNYRGYDGTQNSSRREAAQQTLNKSTTQQHRSELKAKAQQHPVS 464
+ + Q ++A+ TQ + ++ +T TT+ + K ++ V
Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115

Query: 465 QQQRDTARQRIESSTPQQRQA 485
++ + +P+Q Q+
Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQS 1136


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4447TYPE3OMBPROT300.009 Type III secretion system outer membrane B protein ...
		>TYPE3OMBPROT#Type III secretion system outer membrane B protein

family signature.
Length = 538

Score = 30.4 bits (68), Expect = 0.009
Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 28/174 (16%)

Query: 14 ITSYHAYANDSAVGETNGSIEFLQ----QNEISMAKERLLIASDRINVDYVFINHSAQDI 69
+ SY N GE N IE L QN+ S+ + LL A DR V Y I + D
Sbjct: 33 VISYQRVKN----GERNKGIEALNRLYLQNQTSLTGKSLLFARDRAEVFYEAIKLAGGD- 87

Query: 70 TVPVAFPMPAISQRYMGDSTEGIANFKISVDGKPVKSESRWRVIHDLGGKGEEDITAKLL 129
T + M + +G+ + N V + ++++ LG K ++++ K+
Sbjct: 88 TSKIKAMMERLDTYKLGEVNKRHINELNKVISEEIRAQ--------LGIKNKKELQTKIK 139

Query: 130 QTGWTIPQLRHVLNREGKASIEE-----GYKEGKQQLPSEWFDDGYLNIAVQQY 178
Q LN + + + G G Q P+ G NI V++Y
Sbjct: 140 QI------FTDYLNNKNWGPVNKNISHHGKNYGFQLTPASHMKIGNKNIFVKEY 187


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4450SECBCHAPRONE300.009 Bacterial protein-transport SecB chaperone protein ...
		>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein

signature.
Length = 170

Score = 29.9 bits (67), Expect = 0.009
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 160 KDNQPQFTIQRNFIWQQSFPAGKAVTI-HQVYTPSVSLSALMSTDELDND 208
QP IQR ++ SF A I Q + P +S ++ +D
Sbjct: 14 ATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDD 63


74SeKA_A4473SeKA_A4498Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4473-119-3.185491putative fimbrial subunit
SeKA_A4474119-3.333494hypothetical protein
SeKA_A4475018-3.078630PTS system, IIA component
SeKA_A4476216-2.579208polysaccharide deacetylase domain protein
SeKA_A4477319-3.137649putative fimbrial protein
SeKA_A4478320-3.673155putative fimbrial protein
SeKA_A4479220-3.317032putative fimbrial protein
SeKA_A4480017-2.595324putative fimbrial protein
SeKA_A4481-117-1.240361outer membrane usher protein HtrE
SeKA_A4482-217-0.278655chaperone protein EcpD
SeKA_A4483-2191.888892major fimbrial subunit
SeKA_A4484-1183.483568aspartate 1-decarboxylase
SeKA_A4485-1193.411197pantoate--beta-alanine ligase
SeKA_A4486-2162.7143473-methyl-2-oxobutanoate
SeKA_A4487-1153.1838232-amino-4-hydroxy-6-
SeKA_A44880104.102020poly(A) polymerase
SeKA_A4489-1124.128712glutamyl-Q tRNA
SeKA_A4490-1143.667337RNA polymerase-binding protein DksA
SeKA_A4491-1132.397884sugar fermentation stimulation protein
SeKA_A4492-1133.1355032'-5' RNA ligase
SeKA_A4493-2143.026003ATP-dependent helicase HrpB
SeKA_A4494-3143.321884penicillin-binding protein 1B
SeKA_A4495-2132.928925hypothetical protein
SeKA_A4496-1122.299331ferrichrome-iron receptor
SeKA_A44973193.794540ferrichrome transport ATP-binding protein FhuC
SeKA_A44982182.651830ferrichrome-binding periplasmic protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4481PF005777760.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 776 bits (2005), Expect = 0.0
Identities = 269/879 (30%), Positives = 449/879 (51%), Gaps = 34/879 (3%)

Query: 2 LFQRSLLCLTIG----AALPFSVSAANSVAEKTVAESDEAVEFNEQFLLNSS-ANIDISR 56
L+QR+ CL I A + A + A S + FN +FL + A D+SR
Sbjct: 8 LYQRNTQCLHIRKHRLAGFFVRLFVACAFAA-QAPLSSAELYFNPRFLADDPQAVADLSR 66

Query: 57 YAYGNPVLAGTYRVKVNLNNALKSTSEITFNEN-GTPRASACLTPLLLTQAGVDPAAMRD 115
+ G + GTYRV + LNN +T ++TFN CLT L G++ A++
Sbjct: 67 FENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSG 126

Query: 116 DVEVDDNTTCLDIKKYYPGATANYDSGKQAMDLNFPQIYILKRPAGYVDPSLWEDGVPAA 175
+ D+ C+ + ATA D G+Q ++L PQ ++ R GY+ P LW+ G+ A
Sbjct: 127 MNLLADDA-CVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAG 185

Query: 176 IVSYDMNAWHSEGN-GTTSDTAYVGLRYGLNMGPWRLRSRGSLNWNKDTGS-----EYNN 229
+++Y+ + + G S AY+ L+ GLN+G WRLR + ++N S ++ +
Sbjct: 186 LLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQH 245

Query: 230 QDVYLQRDITALKAQMVIGDSYTRGDAFDSFSLSGIRMYNDDRMLPMGSSNYAPVIRGVA 289
+ +L+RDI L++++ +GD YT+GD FD + G ++ +DD MLP +APVI G+A
Sbjct: 246 INTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIA 305

Query: 290 NSNAKVTVMQSGNKIYETTVPPGAFEINDLSTTGYGNDLLVTVEEADGSKRSFTVPFSSV 349
A+VT+ Q+G IY +TVPPG F IND+ G DL VT++EADGS + FTVP+SSV
Sbjct: 306 RGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSV 365

Query: 350 TQMLRPGATRWDIGVGEL-NDDSLHDKPQVGYAQFYYGLNNTFTGYIGAQYTDMNFYAGL 408
+ R G TR+ I GE + ++ +KP+ + +GL +T Y G Q D + A
Sbjct: 366 PLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLAD-RYRAFN 424

Query: 409 LGLAMNTG-IGAFAFDVTQSHASIDDLGTLSGQSYRLTYSKMIEATNTSFNVAAYRFSTE 467
G+ N G +GA + D+TQ+++++ D GQS R Y+K + + T+ + YR+ST
Sbjct: 425 FGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTS 484

Query: 468 DYLSLNDAASLQDSVKH---QQYAQQSYRSGDELYDDYQRTKNQVQISINQPLNQGETTW 524
Y + D + + + Q Q + Y+ + ++Q+++ Q L +
Sbjct: 485 GYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR----T 540

Query: 525 GSVYVSGTWQDYWNDAGSTANYSVGYNNSFAYGSYSVSLQRAYDQNGSK-DDSVYLSFSI 583
++Y+SG+ Q YW + + G N +F ++++S + D + L+ +I
Sbjct: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI 600

Query: 584 PLSMFSHNGERSG-GFSNINMGLRSDMKGGTNVNSTASGNT-KDSDISYSVSA-TSSSGN 640
P S + + +S ++ + + D+ G + G +D+++SYSV + G+
Sbjct: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD 660

Query: 641 YGNLNQVSGFGSLNSSYGPLGISASFGDDNSQQYSASYSGGMVLHSGGVAFAPGSIGETD 700
+ + + YG I S DD +Q SGG++ H+ GV + +T
Sbjct: 661 GNSGSTGYATLNYRGGYGNANIGYSHSDDI-KQLYYGVSGGVLAHANGVTLGQ-PLNDT- 717

Query: 701 AVALVKASGAQGAGL-GYSSSEIGSSGYGILPYMSAYRENRVSLDISTLENDVEIKSTST 759
V LVKA GA+ A + + GY +LPY + YRENRV+LD +TL ++V++ +
Sbjct: 718 -VVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVA 776

Query: 760 VTVPRSGAVVLVNFETDEGRSLILELLRSDKGFIPLGADVLNEKNETVGTVGQAGQAYVR 819
VP GA+V F+ G L++ L ++K +P GA V +E +++ G V GQ Y+
Sbjct: 777 NVVPTRGAIVRAEFKARVGIKLLMTLTHNNKP-LPFGAMVTSESSQSSGIVADNGQVYLS 835

Query: 820 GVEPQGELRVVWGSGKESTCTVRYQLAETTAKAGLTPVL 858
G+ G+++V WG + + C YQL + + LT +
Sbjct: 836 GMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 874


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4498FERRIBNDNGPP4990.0 Ferrichrome-binding periplasmic protein signature.
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.

Length = 296

Score = 499 bits (1286), Expect = 0.0
Identities = 246/296 (83%), Positives = 267/296 (90%)

Query: 1 MRDLYPLTRRRLLTAMALSPLLWQMNTAQAAAIDPRRIVALEWLPVELLLALGITPYGVA 60
M L ++RRRLLTAMALSPLLWQMNTA AAAIDP RIVALEWLPVELLLALGI PYGVA
Sbjct: 1 MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA 60

Query: 61 DVPNYKLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEKLARIAPGR 120
D NY+LWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPE LARIAPGR
Sbjct: 61 DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR 120

Query: 121 GFDFSDGKKPLAVARRSLVELAQTLNLEAAAEKHLAQYDRFIASQKPHFIRRGGRPLLMT 180
GF+FSDGK+PLA+AR+SL E+A LNL++AAE HLAQY+ FI S KP F++RG RPLL+T
Sbjct: 121 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLT 180

Query: 181 TLIDPRHMLVLGPNCLFQEVLDEYGIVNAWQGETNFWGSTAVSIDRLAMYKEADVICFDH 240
TLIDPRHMLV GPN LFQE+LDEYGI NAWQGETNFWGSTAVSIDRLA YK+ DV+CFDH
Sbjct: 181 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH 240

Query: 241 GNSTDMNALMATPLWQAMPFVRAGRFHRVPAVWFYGATLSTMHFVRILNNVLGGKA 296
NS DM+ALMATPLWQAMPFVRAGRF RVPAVWFYGATLS MHFVR+L+N +GGKA
Sbjct: 241 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA 296


75SeKA_A4574SeKA_A4632Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A45740163.998006putative methyltransferase
SeKA_A45751174.734451ribonuclease HI
SeKA_A45761195.503087DNA polymerase III, epsilon subunit
SeKA_A45783195.436206*ImpA-related N- family protein
SeKA_A45792175.243831type VI secretion protein, family
SeKA_A45801174.802903type VI secretion protein, family
SeKA_A45810153.725722type VI secretion system lysozyme-related
SeKA_A45820143.117745SciE protein
SeKA_A45830142.472743putative cytoplasmic protein
SeKA_A4584-1141.759935type VI secretion ATPase, ClpV1 family
SeKA_A4585015-3.056399type VI secretion protein, family
SeKA_A4586118-3.877119type VI secretion protein, EvpB/family
SeKA_A4587325-6.490381putative cytoplasmic protein
SeKA_A4588220-1.787543hemolysin-coregulated protein
SeKA_A45891190.206276putative cytoplasmic protein
SeKA_A4590120-0.404433putative periplasmic protein
SeKA_A4591020-0.965159hemolysin-coregulated protein
SeKA_A4592-1233.802563type VI secretion lipoprotein, family
SeKA_A45931244.878546type VI secretion protein, family
SeKA_A45940224.052021SciP protein
SeKA_A45950233.647474putative inner membrane protein
SeKA_A45961233.323808SciR protein
SeKA_A45971243.767239type VI secretion protein IcmF
SeKA_A4598535-4.716953conserved hypothetical protein
SeKA_A4599850-11.650321probable secreted protein
SeKA_A4600523-3.031933putative cytoplasmic protein
SeKA_A4601523-3.084870conserved hypothetical protein
SeKA_A46023233.385279conserved hypothetical protein
SeKA_A46033222.778726hypothetical protein
SeKA_A46043222.753767hypothetical protein
SeKA_A46053222.382264Rhs-family protein
SeKA_A46063241.679810conserved hypothetical protein
SeKA_A46074212.056372YD repeat protein
SeKA_A4608624-2.886546hypothetical protein
SeKA_A46094323.658648hypothetical protein
SeKA_A46114302.362725putative periplasmic protein
SeKA_A46123292.706500putative cytoplasmic protein
SeKA_A46133313.371531Rhs-family protein
SeKA_A46142321.777511conserved hypothetical protein
SeKA_A46152331.888197Rhs-family protein
SeKA_A4616435-14.325929conserved hypothetical protein
SeKA_A4617434-11.212548conserved hypothetical protein
SeKA_A4618729-3.290576hypothetical protein
SeKA_A4619731-3.247675conserved hypothetical protein
SeKA_A4621928-0.691466putative cytoplasmic protein
SeKA_A46231029-0.707600hypothetical protein
SeKA_A4624931-2.676806hypothetical protein
SeKA_A4626931-2.315139outer membrane usher protein SfmD
SeKA_A4627734-6.942128putative fimbrial structural subunit
SeKA_A4628734-8.092877polysaccharide deacetylase family protein
SeKA_A4629330-7.667813TnpA
SeKA_A4630128-7.408643LysR-family transcriptional regulator SinR
SeKA_A4631-119-4.465248hypothetical protein
SeKA_A4632-219-4.464940putative outer membrane adhesin
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4584HTHFIS320.007 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 32.5 bits (74), Expect = 0.007
Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 31/185 (16%)

Query: 529 ALREWQGDAPVV----FPEVSAAVVA--AIVADWTGIP--AGRMVKDEASQVLELPARLA 580
+++ + D PV+ A+ A D+ P ++ + E R +
Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPS 127

Query: 581 QRVTGQDGALAQIGE--RIQTAR---AGLGDPRKPVGVFMLAGPSGVGKTETALALAEAI 635
+ + +G +Q A L + M+ G SG GK A AL +
Sbjct: 128 KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL---MITGESGTGKELVARALHDYG 184

Query: 636 YGGEQNLITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRHPWSV-------VL 688
+ INM+ S L G E G T A R +
Sbjct: 185 KRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLF 236

Query: 689 LDEIE 693
LDEI
Sbjct: 237 LDEIG 241


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4594OMPADOMAIN702e-15 OMPA domain signature.
		>OMPADOMAIN#OMPA domain signature.

Length = 346

Score = 70.3 bits (172), Expect = 2e-15
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 317 QHSRVVFRGDAMFVPGQKTVSDAIRPVINKAAREIARVG---GAVTVTGHTDSQPIHSAE 373
Q + D +F + T+ + +++ +++ + G+V V G+TD I S
Sbjct: 211 QTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDA 268

Query: 374 FPSNLVLSEKRAAEVAALLTSGGVPAGRVHIVGKGDTVPVADN---------GSKAGRAK 424
+ N LSE+RA V L S G+PA ++ G G++ PV N A
Sbjct: 269 Y--NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAP 326

Query: 425 NRRVEILV 432
+RRVEI V
Sbjct: 327 DRRVEIEV 334


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4619HOKGEFTOXIC280.004 Hok/Gef cell toxic protein family signature.
		>HOKGEFTOXIC#Hok/Gef cell toxic protein family signature.

Length = 52

Score = 27.9 bits (62), Expect = 0.004
Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 9 SLLFMVLIVLFVILFFTWLGRENI 32
SL++ VLIV +L FT+L R+++
Sbjct: 7 SLVWCVLIVCLTLLIFTYLTRKSL 30


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4626PF005778310.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 831 bits (2147), Expect = 0.0
Identities = 310/872 (35%), Positives = 453/872 (51%), Gaps = 52/872 (5%)

Query: 4 KQPALLLFIAGVVHCANA-------HAYTFDASML-GDAAKGVDMSLFNQG-VQQPGTYR 54
K F+ V CA A F+ L D D+S F G PGTYR
Sbjct: 20 KHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYR 79

Query: 55 VDVMVNGKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDE 114
VD+ +N + TRDV F QG + PCLT +QL+ G+ T + A D
Sbjct: 80 VDIYLNNGYMATRDVTFNTGDSEQG---IVPCLTRAQLASMGLNTASVSGMNLLAD--DA 134

Query: 115 CADL-SAIPQAKAVLDINNQQLQLSIPQVALRTKFKGIAPEDLWDDGIPAFLMNYSARTT 173
C L S I A A LD+ Q+L L+IPQ + + +G P +LWD GI A L+NY+
Sbjct: 135 CVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGN 194

Query: 174 QTDYKMDMERRDNSSWVQLQPGINIGAWRVRNATSWQR-----SGQQSGKWQAAYTYAER 228
++ + +++ LQ G+NIGAWR+R+ T+W S KWQ T+ ER
Sbjct: 195 SVQNRIG--GNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLER 252

Query: 229 GLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVE 288
+ L+SRLTLG +QG+IFD + F G LASDDNM+P S+R FAPV+ GIAR A+V
Sbjct: 253 DIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVT 312

Query: 289 VKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQG 348
+KQNGY IYN+TV PGPF + D+ +SGDL VT+ EADGSTQ+F VPY + + +G
Sbjct: 313 IKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREG 372

Query: 349 YLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAALLGLGGSLG 408
+ +YS+ AG YRS ++ +K + Q+TL++GLP T YGG Q A Y+A G+G ++G
Sbjct: 373 HTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMG 432

Query: 409 RWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDV 468
G+LSVD + +S ++ G S R Y+ L +GTN L ++Y++ GY +D
Sbjct: 433 ALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADT 492

Query: 469 LDSYRHNGNRL-------------WSWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTD 515
S + N + + L ++Q GR L L+GS
Sbjct: 493 TYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQT 551

Query: 516 WRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGN 575
+ D+ + T+ + +L+++ + W+ G ++ + +L ++P S W +
Sbjct: 552 YWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKG---RDQMLALNVNIPFSHWLRS 608

Query: 576 -------NVSASWQMTSPSHGGQTQQVGVNGEAFSQ-QLDWEVRQSYRADAPPGGGNNSA 627
+ SAS+ M+ +G T GV G L + V+ Y G+
Sbjct: 609 DSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGY 668

Query: 628 LHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASG 687
L + G YG YS+S ++Q+ ++GG++ H +GVTLGQPL +V LV+APGA
Sbjct: 669 ATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKD 728

Query: 688 VPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEA 747
V GV+TD+RG + Y+EN V+LD + L D+ ++ VVPT GA+V A
Sbjct: 729 AKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRA 788

Query: 748 KFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLADKGELTVK 807
+F R+G + LMTL + +PFGA VT + S+ +V + QVYL+G+ G++ VK
Sbjct: 789 EFKARVGIKLLMTLTH-NNKPLPFGAMVT-SESSQSSGIVADNGQVYLSGMPLAGKVQVK 846

Query: 808 WGA---QQCRVNYQLPAHKGIAGLYQMSGLCR 836
WG C NYQLP L Q+S CR
Sbjct: 847 WGEEENAHCVANYQLPPESQQQLLTQLSAECR 878


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4627PF05775927e-27 Enterobacteria AfaD invasin protein
		>PF05775#Enterobacteria AfaD invasin protein

Length = 142

Score = 92.3 bits (229), Expect = 7e-27
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)

Query: 14 SVSLLVAASSLMPIANAAEKLQTTLRVGTYFRAGHVPDGMVLAQGWVTYHGSHSGFRVWS 73
S+SL + LM + + ++ TL Y + DG+ LA G + +HSGFRVW
Sbjct: 4 SISLTLCGILLMLMGSFSQAADITLMNHKYM-GNLLHDGVKLATGRIICQDTHSGFRVWI 62

Query: 74 DEQKAGNTPAVLLLSGQQDPRHHIQVRLEGEGWQPDTVNGRGAILRTAADNAS-FSVVVD 132
+ ++ G ++ + P+H++++R+ G GW G + T ++AS F + VD
Sbjct: 63 NARQEGGGAGKYIVQSTEGPQHNLRIRISGNGWSSFVEKGIQGVFNTIKEDASIFYIEVD 122

Query: 133 GNQEVPADTWTL 144
GNQ+V +
Sbjct: 123 GNQQVQPGKYLF 134


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4632ENTEROVIROMP335e-04 Enterobacterial virulence outer membrane protein si...
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein

signature.
Length = 171

Score = 33.0 bits (75), Expect = 5e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 146 VGLAHVKLSNNTIPVGFGINETLSASKNNFAWGAGIGAKYAVTDNIMIDASYKYINAGKV 205
VG+ + K P S F++GAG+ ++ +N+ +D SY+ V
Sbjct: 106 VGVGYGKFQTTEYPTYKH-----DTSDYGFSYGAGL--QFNPMENVALDFSYEQSRIRSV 158

Query: 206 SI 207
+
Sbjct: 159 DV 160


76SeKA_A4652SeKA_A4683Y        Y        YPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4652226-3.480419*ISEc16, orfB
SeKA_A4654127-3.973737conserved hypothetical protein
SeKA_A4655228-4.069222putative permease
SeKA_A4656225-2.4691083-isopropylmalate dehydratase, large subunit
SeKA_A4657324-3.7045043-isopropylmalate dehydratase, small subunit
SeKA_A4658126-4.8451895-oxopent-3-ene-1,2,5-tricarboxylate
SeKA_A4659124-3.878295haloacetate dehalogenase H-1
SeKA_A4660219-2.238735transcriptional regulator, LysR family
SeKA_A4661320-2.644742hypothetical protein
SeKA_A4662319-2.903466putative outer membrane protein
SeKA_A4663320-2.853092fimbrial chaperone protein
SeKA_A4664321-4.010024putative fimbrial usher
SeKA_A4665322-4.745879outer membrane fimbrial usher protein
SeKA_A4666333-9.143309fimbrial chaperone protein
SeKA_A4667436-9.998820fimbrial protein
SeKA_A4668337-10.482534hypothetical protein
SeKA_A4669336-10.289061putative transmembrane regulator
SeKA_A4671235-9.654683cyclic diguanylate phosphodiesterase (EAL)
SeKA_A4672240-13.060348putative response regulator
SeKA_A4673338-11.903362putative inner membrane protein
SeKA_A4674124-3.756319hypothetical protein
SeKA_A4675-2170.029423attachment invasion locus protein
SeKA_A4676-2172.132451putative response regulator
SeKA_A4677-1134.525969conserved domain protein
SeKA_A4678-1134.867527cytochrome c type biogenesis protein CycH
SeKA_A46790145.297132outer membrane efflux protein OprA
SeKA_A46800144.769807OqxB
SeKA_A4681-1144.521113putative auxiliary transport protein, membrane
SeKA_A46820100.461602copper-translocating P-type ATPase
SeKA_A4683-113-3.587183Cu(I)-responsive transcriptional regulator
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4655TCRTETA492e-08 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 49.1 bits (117), Expect = 2e-08
Identities = 60/257 (23%), Positives = 95/257 (36%), Gaps = 16/257 (6%)

Query: 68 FSGTLSDRFGRKPIIFYSLLAGGILTLLCATASSWPMLVVYRALLGIAVSGITAAVTVYI 127
G LSDRFGR+P++ SL + + ATA +L + R + GI +G T AV
Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI--TGATGAVAGAY 119

Query: 128 SEEVSPALA-----GIVTGYFIFGNSLGSMSGRVFATLMMEHVSIDTIFFIFGGVLIAMA 182
+++ G ++ F FG G + G +M S FF +
Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGG-----LMGGFSPHAPFFAAAALNGLNF 174

Query: 183 LAVKLFLPTSRQFVPTPSLQLGAVLKGGLEHFKNIR-VSLCFVIGFI--LFGSFTSIFNF 239
L LP S + P + + + V+ + FI L G + +
Sbjct: 175 LTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL-W 233

Query: 240 LAFYLHRPPYELSYTWIGLIPVSFSLTFFLAPYAARVALNIGSMNALSMLIICMMVGAFL 299
+ F R ++ + I L + A VA +G AL + +I G L
Sbjct: 234 VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYIL 293

Query: 300 TLIAPSLWVFISGIVLL 316
A W+ +VLL
Sbjct: 294 LAFATRGWMAFPIMVLL 310


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4665PF005777620.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 762 bits (1969), Expect = 0.0
Identities = 264/880 (30%), Positives = 417/880 (47%), Gaps = 63/880 (7%)

Query: 4 TINLNRKS-LALLIAIVCSGSAQG----EEYYFDPALLQGATYGQ-NIARFNE-QQTPSG 56
I +R + + + + C+ +AQ E YF+P L +++RF Q+ P G
Sbjct: 17 HIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPG 76

Query: 57 DYLADVYVNGTLVTASTNIRFNAVKEGQQTEPCLPLSVMKAAQIKSLPATGAA----TEC 112
Y D+Y+N + A+ ++ FN Q PCL + + + + + +G C
Sbjct: 77 TYRVDIYLNNGYM-ATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC 135

Query: 113 RPLREWVPHAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSGALALFLRHNTNWTH 172
PL + A Q D RL LTIP ++++ RGYI P WD G A L +N +
Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNS 195

Query: 173 TENTDSHYRYQYLWSGLNMGVNLGLWQVRHQSNLRYANSNQS-GSAWRYNSVRTWVQRPV 231
+N Y + L G+N+G W++R + Y +S+ S GS ++ + TW++R +
Sbjct: 196 VQN-RIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDI 254

Query: 232 ASINSILSLGDSYTDSSLFGSLSFNGAKLVTDERMRPQGKRGYAPEVRGVAASSAHVVVK 291
+ S L+LGD YT +F ++F GA+L +D+ M P +RG+AP + G+A +A V +K
Sbjct: 255 IPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIK 314

Query: 292 QLGKVIYETNVPPGPFYIDDLYNTRYQGDLEVEVIEASGKTSRFTVPYSSVPDSVRPGNW 351
Q G IY + VPPGPF I+D+Y GDL+V + EA G T FTVPYSSVP R G+
Sbjct: 315 QNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHT 374

Query: 352 HYSLAFGRVRQYY--DIENRFFEGTFQHGVNNTITLNLGSRIAQRYQAWLAGGVWATGM- 408
YS+ G R + RFF+ T HG+ T+ G+++A RY+A+ G G
Sbjct: 375 RYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGAL 434

Query: 409 GAFGLNATWSNARAEHNDRQQGWRAELSYSKTFT-TGTNLVLAAYRYSTNGFRDLQDVLG 467
GA ++ T +N+ + + G Y+K+ +GTN+ L YRYST+G+ + D
Sbjct: 435 GALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTY 494

Query: 468 VRREAKTGI-------------DYYSDTLHQRNRLSATVSQPLGRLGTLNLSASTADYYN 514
R DYY+ ++R +L TV+Q LGR TL LS S Y+
Sbjct: 495 SRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWG 554

Query: 515 NQSRITQLQMGYSNQWRNISYGVNIARQRTTWDYDRFYHGVNEPLDVSSRQKYTETTMSF 574
+ Q Q G + + +I++ ++ + + W + ++
Sbjct: 555 TSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKG------------------RDQMLAL 596

Query: 575 NVSIPLDWGENRTSVA------MNYNQSSQSRSST---VSMTGSSGENSDLSWSVYGGYE 625
NV+IP S + +Y+ S + G+ E+++LS+SV GY
Sbjct: 597 NVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYA 656

Query: 626 RYRNSNSDSSAPTTFGGNLQQNTRFGALRANYDQGDNYRQEGLGASGTLVLHPGGLTAGP 685
+ NS S+ L +G Y D+ +Q G SG ++ H G+T G
Sbjct: 657 GGGDGNSGSTG----YATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQ 712

Query: 686 YTSDTFALIHADGAQGAIVQNGQGAVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELT 745
+DT L+ A GA+ A V+N G D GYA+LP + YR N V LDT + + +L
Sbjct: 713 PLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLD 772

Query: 746 GGSQQIVPYAGAIARVNFATISGKAVLISVKMPDGGIPPMGADVFNGEGTNIGMVGQSGQ 805
+VP GAI R F G +L+++ + P GA V + + G+V +GQ
Sbjct: 773 NAVANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQ 831

Query: 806 IYARIAHPSGSLLVRWGKEANQRCRVAYQLDLHTKEPFLY 845
+Y +G + V+WG+E N C YQL +++ L
Sbjct: 832 VYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLT 871


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4675ENTEROVIROMP1347e-43 Enterobacterial virulence outer membrane protein si...
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein

signature.
Length = 171

Score = 134 bits (339), Expect = 7e-43
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 21/183 (11%)

Query: 1 MKRRSSFLVFLGLLLASPLALANDQHTVSFGYAQTHLSSLKNSDSKDLRGFNFKYRYEFN 60
MK+ + +L + TV+ GYAQ+ N + GFN KYRYE +
Sbjct: 1 MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMN----KMGGFNLKYRYEED 56

Query: 61 ET-WGMLGSFTATRNEMENYTWKEGKLHKNGSDSVDYGSLMFGPTYRFNDYVSLYGNAGI 119
+ G++GSFT T + K Y + GP YR ND+ S+YG G+
Sbjct: 57 NSPLGVIGSFTYTEKSRTASSGDYNK--------NQYYGITAGPAYRINDWASIYGVVGV 108

Query: 120 ATMKF--------NKHSKEDSFAYGAGVIFNPVKSISIDASWEASRFFAVDTNTFGVSVG 171
KF + + F+YGAG+ FNP++++++D S+E SR +VD T+ VG
Sbjct: 109 GYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVG 168

Query: 172 YRF 174
YRF
Sbjct: 169 YRF 171


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4679cdtoxinb310.009 Cytolethal distending toxin B signature.
		>cdtoxinb#Cytolethal distending toxin B signature.

Length = 269

Score = 30.7 bits (69), Expect = 0.009
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 75 AIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDAGRTPADLSVTDEPEINR 134
AIA+RNN A VE +R R + L D R PADL + + R
Sbjct: 155 AIAMRNN----DAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLTVPVRR 210

Query: 135 RYEMAGATTA 144
E+ A
Sbjct: 211 ASEIISPAAA 220


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4680ACRIFLAVINRP10460.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 1046 bits (2706), Expect = 0.0
Identities = 434/1040 (41%), Positives = 660/1040 (63%), Gaps = 19/1040 (1%)

Query: 6 FFIARPIFAIVLSLLMLLAGAIAFLKLPLSEYPAVTPPTVQVSASYPGANPQVIADTVAA 65
FFI RPIFA VL++++++AGA+A L+LP+++YP + PP V VSA+YPGA+ Q + DTV
Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63

Query: 66 PLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSRALPRLPEEVQ 125
+EQ +NG+D ++YM++ G + I++ F+ GTDPD+AQ+QVQN++ A P LP+EVQ
Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123

Query: 126 RIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVGDVLVWGAGEY 185
+ G+ EK+S LMV VS +S++ V+D L+RL GVGDV ++G +Y
Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQY 182

Query: 186 AMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEASA-AFQMTVNTLGRLTS 244
AMR+WLD + LT D++ L+ QN Q+AAG +G P ++ R +
Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242

Query: 245 EEQFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRSLLNGEAAPALQIIQSPGANAIDV 304
E+FG++ +++ +DG V RL+DVARV LG + Y + + +NG+ A L I + GANA+D
Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302

Query: 305 SNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQSVAITLLEALVLVVLVVVLFLQTW 364
+ AI+ K+ ELQ FPQ ++ YD T FV+ S+ V TL EA++LV LV+ LFLQ
Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362

Query: 365 RASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENVERHISQ 424
RA++IP +AVPV L+GTFA++ FG+S+NTL++FG+VL+IG++VDDAIVVVENVER + +
Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422

Query: 425 GKSPG-EAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTILSA 483
K P EA +K+M ++ G ++ I VL+AVFIP AF G G YRQF++TI + LS
Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482

Query: 484 INSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGFFHRFNRFFDSASNRYVSAVRRA 543
+ +L L+PAL A LL+P ++ GGFF FN FD + N Y ++V +
Sbjct: 483 LVALILTPALCATLLKP---------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533

Query: 544 VRGSVIVMVLYAGFVGLTWLGFHQVPNGFVPAQDKYYLVGIAQLPSGASLDRTEAVVKQM 603
+ + +++YA V + F ++P+ F+P +D+ + + QLP+GA+ +RT+ V+ Q+
Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593

Query: 604 SAIALA--EPGVESVVVFPGLSVNGPVNVPNSALMFAMLKPFDEREDPSLSANAIAGKLM 661
+ L + VESV G S +G N+ + F LKP++ER SA A+ +
Sbjct: 594 TDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK 651

Query: 662 HKFSHIPDGFIGIFPPPPVPGLGATGGFKLQIEDRAELGFEAMTKVQSEIMSKAMQTP-E 720
+ I DGF+ F P + LG GF ++ D+A LG +A+T+ +++++ A Q P
Sbjct: 652 MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPAS 711

Query: 721 LANMLASFQTNAPQLQVDIDRVKAKSMGVSLTDIFETLQINLGSLYINDFNRFGRTWRVM 780
L ++ + + Q ++++D+ KA+++GVSL+DI +T+ LG Y+NDF GR ++
Sbjct: 712 LVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLY 771

Query: 781 AQADAPFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPA 840
QADA FRM ED+ L VR+A GEM+P SAF T G R+ YNG PS++I G A
Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831

Query: 841 PGFSSGQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSALAIFALAVLLAFLILAAQ 900
PG SSG A +E + + LP G+ ++WT + YQE+ +GN A A+ A++ ++ FL LAA
Sbjct: 832 PGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890

Query: 901 YNSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR- 959
Y SWS+P +V+L+ P+ ++ ++ + N+++ +G + +GL+AKNAILIVEFA+
Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950

Query: 960 AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAGM 1019
E +G + A L A R+RLRPILMTS AFI GV+PL ++ GAG+ ++A+GI V GM
Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010

Query: 1020 LGVTLFGLLLTPVFYVVVRR 1039
+ TL + PVF+VV+RR
Sbjct: 1011 VSATLLAIFFVPVFFVVIRR 1030



Score = 89.5 bits (222), Expect = 4e-20
Identities = 68/426 (15%), Positives = 145/426 (34%), Gaps = 34/426 (7%)

Query: 643 FDEREDPSLSANAIAGKLMHKFSHIPDGFIGIFPPPPVPGLGATGGFKLQIEDRAELGFE 702
F DP ++ + KL +P + ++ + + ++
Sbjct: 94 FQSGTDPDIAQVQVQNKLQLATPLLPQEV----QQQGISVEKSSSSYLMVAGFVSDNP-- 147

Query: 703 AMTKVQSEIMSKAMQTPELANM--LASFQTNAPQLQVDI--DRVKAKSMGVSLTDIFETL 758
T+ + L+ + + Q Q + I D ++ D+ L
Sbjct: 148 GTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQL 207

Query: 759 Q---INLGSLYIND---FNRFGRTWRVMAQADAPFRMQQ-EDIGLLKVR-NAKGEMIPLS 810
+ + + + ++AQ R + E+ G + +R N+ G ++ L
Sbjct: 208 KVQNDQIAAGQLGGTPALPGQQLNASIIAQT----RFKNPEEFGKVTLRVNSDGSVVRLK 263

Query: 811 AFVTIMRQSGPDRII-HYNGFPSVDISGGPAPGFSSGQATDAIEKIV---RETLPEGM-- 864
+ +I NG P+ + A G ++ AI+ + + P+GM
Sbjct: 264 DVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKV 323

Query: 865 --VFEWTDLVYQEKQAGNSALAIFALAVLLAFLILAAQYNSWSLPFAVLLIAPMSLLSAI 922
++ T V + + + + A++L FL++ + + P+ LL
Sbjct: 324 LYPYDTTPFV---QLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTF 380

Query: 923 VGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVE-FARAKEHDGADPLTAVLEASRLRLR 981
+ G N T G V+ +GL +AI++VE R D P A ++
Sbjct: 381 AILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQG 440

Query: 982 PILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAGMLGVTLFGLLLTPVFYVVVRRMA 1041
++ + A +P+ G+ + I + + M L L+LTP + +
Sbjct: 441 ALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPV 500

Query: 1042 LKRENR 1047
+
Sbjct: 501 SAEHHE 506


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4681RTXTOXIND484e-08 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 47.9 bits (114), Expect = 4e-08
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 74 ELRSRVGGTLDAVSVPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADF 133
E++ + + V EG V +G +L ++ E + L QA + + Q
Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157

Query: 134 DRIQR-------LVASGAVSRKNADDVTATRNARQAQMQSAKAAVAAARLEL 178
I+ L + ++V + + Q + + L L
Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209



Score = 34.4 bits (79), Expect = 8e-04
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 112 LDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSAKAAV 171
L +QL Q E A+ ++ + +L + ++ + +
Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKN---------EILDKLRQTTDNIGLLTLEL 318

Query: 172 AAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIV 217
A + I AP++ +V ++ V GGV A L IV
Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHT----EGGVVTTAETLMVIV 360


77SeKA_A4695SeKA_A4703Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A46951173.320673protein YahO
SeKA_A46961173.629196propionate catabolism operon regulatory protein
SeKA_A46971193.599623methylisocitrate lyase
SeKA_A4698219-0.1825592-methylcitrate synthase
SeKA_A4699117-0.5502222-methylcitrate dehydratase
SeKA_A4700217-1.353974propionate--CoA ligase
SeKA_A4701320-2.582072delta-aminolevulinic acid dehydratase
SeKA_A4702521-3.141021hypothetical protein
SeKA_A4703522-2.907104putative autotransporter/pertactin
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4696HTHFIS343e-115 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 343 bits (882), Expect = e-115
Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 57/376 (15%)

Query: 192 ALDMTRLTRRQRVDYPSGKGLQTRYELGDIRGQSPQMEQLRQTITLYARSRAAVLIQGET 251
AL + + + + G+S M+++ + + ++ ++I GE+
Sbjct: 118 ALAEPKRRPSKL--------EDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169

Query: 252 GTGKELAAQAIHQTFFHRQPHRQNKPSPPFVAVNCGAITESLLEAELFGYEEGAFTGSRR 311
GTGKEL A+A+H R+N P FVA+N AI L+E+ELFG+E+GAFTG++
Sbjct: 170 GTGKELVARALHD-----YGKRRNGP---FVAINMAAIPRDLIESELFGHEKGAFTGAQT 221

Query: 312 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVISATH 371
G FE A GGTLFLDEIG+MP+ QTRLLRVL++ T VGG PI DVR+++AT+
Sbjct: 222 R-STGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280

Query: 372 CDLDREIMQGRFRPDLFYRLSILRLTLPPLRERQADILPLAESFLKQSLAAMEIPFTESI 431
DL + I QG FR DL+YRL+++ L LPPLR+R DI L F++Q + +
Sbjct: 281 KDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLD----V 335

Query: 432 RHGLTQCQPLLLAWRWPGNIRELRNMMERLALFLS------------------------- 466
+ + L+ A WPGN+REL N++ RL
Sbjct: 336 KRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKA 395

Query: 467 -VDPAPTLDRQFMRQLLPELMVNTAELTPST---------VDAHTLQDVLARFNGDKTAA 516
Q + + + + + + P + ++ + L G++ A
Sbjct: 396 AARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKA 455

Query: 517 ARYLGISRTTLWRRLK 532
A LG++R TL ++++
Sbjct: 456 ADLLGLNRNTLRKKIR 471


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4701BINARYTOXINB320.003 Binary toxin B family signature.
		>BINARYTOXINB#Binary toxin B family signature.

Length = 764

Score = 32.3 bits (73), Expect = 0.003
Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 254 DVLREIRERTELPLGAYQVSGEYAMIKFAAMAGAIDEEKVVLESLGSIKRAGADLIFSYF 313
+ E+ + +L L QV G A F +D E L I+ A +IF+
Sbjct: 466 NQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGK 525

Query: 314 ALDLAEKNI 322
L+L E+ I
Sbjct: 526 DLNLVERRI 534


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4703PRTACTNFAMLY1206e-30 Pertactin virulence factor family signature.
		>PRTACTNFAMLY#Pertactin virulence factor family signature.

Length = 910

Score = 120 bits (303), Expect = 6e-30
Identities = 103/455 (22%), Positives = 167/455 (36%), Gaps = 67/455 (14%)

Query: 598 VIAMNSDGHLTINGNGDTYDTDQTEAGQDEVDNVGDNVAAATGNYKVRIDNATGAGSVAD 657
V + G +N D +D+ QD A+G +++ + N+ GS
Sbjct: 475 VNTLAGSGLFRMNVFADLGLSDKLVVMQD-----------ASGQHRLWVRNS---GSEPA 520

Query: 658 YKGNELIYVNDKNSTATFSAAN---KADLGAYTYQAKQEGNTV----------------- 697
L+ S ATF+ AN K D+G Y Y+ GN
Sbjct: 521 SANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQ 580

Query: 698 -------------------VLEQMELTDYANMALSIP--SANTNIWNLEQDTVGTRLTNA 736
EL+ AN A++ + +W E + + RL
Sbjct: 581 PGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGEL 640

Query: 737 RHGLADNGGAWVSYFGGNFNGDNGTIN-YDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFA 795
R D GGAW F DN +DQ V G +G D V +W +G AG+
Sbjct: 641 RL-NPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYT 699

Query: 796 KGDLS---DRTGQVDQDSQSAYIYSSARFANN--IFVDGNLSYSHFNNDLSANMSDGTYV 850
+GD D G D S ++ A + + ++D L S ND SDG V
Sbjct: 700 RGDRGFTGDGGGHTD----SVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAV 755

Query: 851 DGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMR 910
G + G L+ G D ++ P ++ G Y+ +N ++V + S+
Sbjct: 756 KGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVL 815

Query: 911 YELGVDAGYTFTYSEDQALTPYFKLAYVYD-DSNNDADVNGDSIDNGVEGSAVRVGLGTQ 969
LG++ G + + + PY K + + + D NG + + G+ +GLG
Sbjct: 816 GRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMA 875

Query: 970 FSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYTW 1004
+ + S Y Y G + W+ + G +Y+W
Sbjct: 876 AALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910


78SeKA_A4721SeKA_A4727Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A47213142.755656conserved hypothetical protein
SeKA_A47223142.915934aro operon protein
SeKA_A47232153.254656protein YaiE
SeKA_A47242142.981771recombination-associated exonuclease RdgC
SeKA_A47262153.077423protein AraJ
SeKA_A47271153.200877exonuclease SbcC
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4726TCRTETA531e-09 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 52.5 bits (126), Expect = 1e-09
Identities = 70/356 (19%), Positives = 122/356 (34%), Gaps = 35/356 (9%)

Query: 23 IFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGH---MISFYAFGVVLGAPVMALF 79
+ ++AL G+G+ IM VL L RD+ + H +++ YA APV+
Sbjct: 11 LSTVALDAVGIGL----IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66

Query: 80 SSRFSLKHILLFLVTLCVMGNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIR 139
S RF + +LL + + AI + +L +GR+V+G GA + I
Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD--IT 124

Query: 140 PGKVTAAVAGMVSGMTVANLVGIPVGTYLSQEFSWRYTFLLIAVFNIAVLTAIFFWVPDI 199
G A G +S +V PV L FS F A N F +P+
Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184

Query: 200 RDKAQGSLREQ----------FHFLRSPAPWLI--FAATMFGNAGVFAWFSYIKPFMMYI 247
+ LR + + A + F + G W +
Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG------E 238

Query: 248 SGFSETSMTFIMMLVGLGM---VLGNLLSGKLSGRYTPLRIAVVTDLVIVLSLMALFFFS 304
F + T + L G+ + +++G ++ R R ++ ++ +
Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLG---MIADGTGYILLA 295

Query: 305 GYKTASLTFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAF--NLGSAIG 358
+ F + + P +L E G G +A +L S +G
Sbjct: 296 FATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4727RTXTOXIND310.024 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 31.3 bits (71), Expect = 0.024
Identities = 23/198 (11%), Positives = 63/198 (31%), Gaps = 10/198 (5%)

Query: 302 QTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLNATGQRLKTWLAEHDGIRVW 361
A + ++ S + ARL R + R+ + +L + ++E + +R+
Sbjct: 131 GAEA-DTLKTQSSLLQARL-EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188

Query: 362 RSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQ 421
+ Q+ L + + + L+ + + + L + +L +Q
Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE-NLSRVEKSRLDDFSSLLHKQ 247

Query: 422 RPLRHRLAALQGQILPKQKRQAKLQAAIARHHQEQAQYTQRLADKRLSYKTK-AQELADV 480
+H + + + + ++ + + E + +K + +L
Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT 307

Query: 481 RTICEQEARIKDLESQRA 498
I L + A
Sbjct: 308 T------DNIGLLTLELA 319


79SeKA_A4760SeKA_A4785Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A47601223.148137thiamine biosynthesis/tRNA modification protein
SeKA_A47612204.1545812-aminoethylphosphonate ABC transport system,
SeKA_A47621204.6185692-aminoethylphosphonate ABC transporter,
SeKA_A47630194.6636532-aminoethylphosphonate ABC transport system,
SeKA_A47640193.5888982-aminoethylphosphonate ABC transporter,
SeKA_A47650193.062236transcriptional regulator protein
SeKA_A4766-1152.4911842-aminoethylphosphonate--pyruvate transaminase
SeKA_A4767-112-0.894295phosphonoacetaldehyde hydrolase
SeKA_A4768-115-2.320482protein ThiJ
SeKA_A4769-114-2.5346132-dehydropantoate 2-reductase
SeKA_A4770013-2.814020conserved hypothetical protein
SeKA_A4771012-2.555408inner membrane transport protein YajR
SeKA_A4773-116-2.566590putative periplasmic protein
SeKA_A4774219-0.785221sel1 repeat family protein
SeKA_A4775426-0.631494protoheme IX farnesyltransferase
SeKA_A47761230.387373cytochrome o ubiquinol oxidase, subunit IV
SeKA_A4777-1210.285332cytochrome o ubiquinol oxidase, subunit III
SeKA_A4778122-0.025506cytochrome o ubiquinol oxidase, subunit I
SeKA_A4779118-0.836496ubiquinol oxidase, subunit II
SeKA_A4780321-0.476399hypothetical protein
SeKA_A47813210.253976MFS family, muropeptide transporter
SeKA_A4783425-0.730619protein BolA
SeKA_A4785323-0.652680trigger factor
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4763PF05272290.044 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 28.9 bits (64), Expect = 0.044
Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 46 VLALIGPSGSGKTTVLRAVAG 66
+ L G G GK+T++ + G
Sbjct: 598 SVVLEGTGGIGKSTLINTLVG 618


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4771TCRTETA854e-20 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 85.3 bits (211), Expect = 4e-20
Identities = 84/383 (21%), Positives = 149/383 (38%), Gaps = 26/383 (6%)

Query: 16 GLGTVFSLRMLGMFMVLPVLTTY--GMALQGASEALIGIAIGIYGLAQAIFQIPFGLLSD 73
L TV L +G+ +++PVL + A GI + +Y L Q G LSD
Sbjct: 10 ILSTVA-LDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68

Query: 74 RIGRKPLIVGGLAVFVAGSVIAALSHSIWGIILGRALQG-SGAIAAAVMALLSDLTREQN 132
R GR+P+++ LA I A + +W + +GR + G +GA A A ++D+T
Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDE 128

Query: 133 RTKAMAFIGVSFGITFAIAMVLGPIVTHSLGLNALFWMIAALATLGILLTIWVVPNSTNH 192
R + F+ FG VLG ++ +A F+ AAL L L +++P S
Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMG-GFSPHAPFFAAAALNGLNFLTGCFLLPESHKG 187

Query: 193 VLNRESGMVKGSFSKVLAEPRLLKLNFGIMCLHILLMSTFVA-LPGQLADAGFPAAEHWK 251
+ + G+ + L+ F+ L GQ+ A + +
Sbjct: 188 ERRPLRREALNPLAS-------FRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240

Query: 252 VYLATMVIAFA--------AVVPFIIYAEVKRRMKQVFLFCVGLII-VAEIVLWGAGQHF 302
+ I + ++ +I V R+ + +G+I +L
Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300

Query: 303 WELVIGVQLFFLAFNLMEAL---LPSLISKESPAGYKGTAMGVYSTSQFLGVALGGSLGG 359
W + L M AL L + +E +G+ + S + +G L ++
Sbjct: 301 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360

Query: 360 WIDGTFDGQTVFLAGAVLAMVWL 382
T++G ++AGA L ++ L
Sbjct: 361 ASITTWNG-WAWIAGAALYLLCL 382


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4781TCRTETB411e-05 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 40.6 bits (95), Expect = 1e-05
Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 15/190 (7%)

Query: 221 RNNAWLI-LLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYG 279
R+N LI L ++ + + + ++++ + VN L +I A+YG
Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70

Query: 280 GILMQRLSLFRALLIFGILQGASNAGYWLLSITDKNMFSMGAAVFFENLCGGMGTAAFVA 339
L +L + R LL I+ + ++ + FS+ + G G AAF A
Sbjct: 71 K-LSDQLGIKRLLLFGIIINCFGS----VIGFVGHSFFSL---LIMARFIQGAGAAAFPA 122

Query: 340 LLM----TLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVVAAVP 394
L+M K F L+ ++ A+G VGP G + + W L ++ +
Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMG-EGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181

Query: 395 GLLLLLVCRQ 404
L+ + ++
Sbjct: 182 VPFLMKLLKK 191


80SeKA_A4858SeKA_A4873Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4858116-3.551112transcriptional regulator AllR
SeKA_A4859015-3.788132glyoxylate carboligase
SeKA_A4860118-4.645276hydroxypyruvate isomerase
SeKA_A4861216-2.9374012-hydroxy-3-oxopropionate reductase
SeKA_A4862114-3.104865major facilitator family transporter
SeKA_A4863113-1.759790NCS1 nucleoside transporter family
SeKA_A4864113-0.735747allantoinase
SeKA_A48650140.501932putative purine permease YbbY
SeKA_A48660131.508893glycerate kinase 1
SeKA_A4867-1141.377417conserved hypothetical protein
SeKA_A4868-1132.407568allantoate amidohydrolase
SeKA_A48690113.306758ureidoglycolate dehydrogenase
SeKA_A4870-1104.686092bacterial FdrA protein
SeKA_A48711124.602509conserved hypothetical protein
SeKA_A48720123.987574putative cytoplasmic protein
SeKA_A48730163.266162carbamate kinase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4862TCRTETA522e-09 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 51.7 bits (124), Expect = 2e-09
Identities = 52/326 (15%), Positives = 113/326 (34%), Gaps = 24/326 (7%)

Query: 62 AYCSMQIPC----GILVDKFGQKIMLMAGFTLFIIGTLCIAKANGLTMIYIGSLMAGGGC 117
Y MQ C G L D+FG++ +L+ + +A A L ++YIG ++AG
Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG 110

Query: 118 ASFFSSAYSLSSANVPQARRA----LANAIINSGSAIGMGIGLIGSSVLVKNMSMAWQNV 173
A+ + A + + RA +A G G +G +
Sbjct: 111 AT-GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH--------A 161

Query: 174 LYIVAAILVIMLCVFTLIIRGKAKSDSAQAEKQTQTVTEDEKRAPLFSGLLCSVYFLYFC 233
+ AA L + + + ++ + ++ R ++ ++ ++F
Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFI 221

Query: 234 TCYGYYLIVTWLPSYLQTERGFDGGAIGLASALVAVVG-VPGALFFSHLSDKFR-NSKVK 291
+ + + +D IG++ A ++ + A+ ++ + +
Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281

Query: 292 VILGLEIVAAAMLAFTVLSPNTTMLMVSLTLYGLLGKMAVDPILISFVSEQASAKSLGRA 351
+ + + +LAF +MV L G+ P L + +S Q + G+
Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLASGGI-----GMPALQAMLSRQVDEERQGQL 336

Query: 352 FSLFNFFGMSSAVVAPTLTGFISDVT 377
+++V P L I +
Sbjct: 337 QGSLAALTSLTSIVGPLLFTAIYAAS 362


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4864UREASE501e-08 Urea amidohydrolase (urease) protein signature.
		>UREASE#Urea amidohydrolase (urease) protein signature.

Length = 570

Score = 49.7 bits (119), Expect = 1e-08
Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 32/163 (19%)

Query: 4 DLIIKNGTVILENEARVIDIAVQGGKIAAIGEN------------LGEAKNVLDATGLIV 51
D +I N ++ DI ++ G+IAAIG+ +G V+ G IV
Sbjct: 69 DTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIV 128

Query: 52 SPGMVDAHTHISEPGRTHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRET------- 104
+ G +D+H H P + A G+T M+ PA T
Sbjct: 129 TAGGMDSHIHFICPQQIE---------EALMSGLTCMLGGGTG--PAHGTLATTCTPGPW 177

Query: 105 -IELKFDAAKGKLTIDAAQLGGLVSYNLDRLHELDEVGVVGFK 146
I +AA ++ A G + L E+ G K
Sbjct: 178 HIARMIEAADA-FPMNLAFAGKGNASLPGALVEMVLGGATSLK 219


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4873CARBMTKINASE358e-127 Bacterial carbamate kinase signature.
		>CARBMTKINASE#Bacterial carbamate kinase signature.

Length = 314

Score = 358 bits (921), Expect = e-127
Identities = 126/310 (40%), Positives = 176/310 (56%), Gaps = 16/310 (5%)

Query: 2 KTLVVALGGNALLQRGEALTAENQYRNIADAVPALARL-ARSYRLAIVHGNGPQVGLLAL 60
K +V+ALGGNAL QRG+ + E N+ +A + AR Y + I HGNGPQVG L L
Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62

Query: 61 QNLAWKA---VEPYPLDVLVAESQGMIGYMLAQRLALEPDM----PPVTAVLTRIKVSAD 113
A +A + P+DV A SQG IGYM+ Q L E V ++T+ V +
Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122

Query: 114 DPAFLEPEKFIGPVYSPEEQMALEATYGWHMKRD-GKYLRRVVASPAPRQIIESAAIELL 172
DPAF P K +GP Y E L GW +K D G+ RRVV SP P+ +E+ I+ L
Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182

Query: 173 LKEGHVVICSGGGGVPVAGEG---EGVEAVIDKDLAAALLAEQIAADGLIILTDADAVYE 229
++ G +VI SGGGGVPV E +GVEAVIDKDLA LAE++ AD +ILTD +
Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242

Query: 230 HWGTPQQRAIRQASPDELAPFAKAD----GAMGPKVTAVSGYVKRCGKPAWIGALSRIDD 285
++GT +++ +R+ +EL + + G+MGPKV A +++ G+ A I L + +
Sbjct: 243 YYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVE 302

Query: 286 TLAGRAGTCI 295
L G+ GT +
Sbjct: 303 ALEGKTGTQV 312


81SeKA_A4883SeKA_A4894Y        Y        NPathogenicity Island (biased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A48833141.015862methylenetetrahydrofolate
SeKA_A48843150.910410type-1 fimbrial protein, A chain
SeKA_A4885416-0.475416fimbrial protein internal segment
SeKA_A4886315-1.288017chaperone protein FimC
SeKA_A4887316-1.589886outer membrane usher protein SfmD
SeKA_A4888123-6.204141mannose binding protein FimH
SeKA_A4889129-8.238333major fimbrial subunit
SeKA_A4890331-9.381079fimbriae Z protein
SeKA_A4891226-6.404754fimbriae Y protein
SeKA_A4892325-5.407346conserved hypothetical protein
SeKA_A4894022-3.533481fimbriae W protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4887PF005778340.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 834 bits (2157), Expect = 0.0
Identities = 405/856 (47%), Positives = 561/856 (65%), Gaps = 19/856 (2%)

Query: 21 VALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFV 80
+ ++ A S E YFNP FL+ D +VADLSRFE G PPG YRVDI+ N+ ++
Sbjct: 30 LFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYM 89

Query: 81 AAQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPG 140
A +D+ F G D G++PC T + +G+NTA+ + D C+ L I
Sbjct: 90 ATRDVTFNTG-----DSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHD 144

Query: 141 AEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSR-----GTDS 195
A D RLN+++PQA + N ARGYIPPE WD GI A L+NY+F+G+ G +S
Sbjct: 145 ATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNS 204

Query: 196 DSYFLSLLSGLNYGPWRLRNNGAWNYSKGDG--YHSQRWNNIGTWVQRAIIPLKSELVMG 253
+L+L SGLN G WRLR+N W+Y+ D +W +I TW++R IIPL+S L +G
Sbjct: 205 HYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLG 264

Query: 254 DSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSY 313
D T D+FD + FRGA+L S DNM PDS +G+AP + GIAR A++TI+QNGY IY S
Sbjct: 265 DGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNST 324

Query: 314 VSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFR 373
V PG F I D+ +SGDL+VT+ E DGS Q +TVPYS+VPLLQREG +Y + AG++R
Sbjct: 325 VPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 384

Query: 374 SGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHA 433
SGN+QQ P FFQ T++ GLPAG T YGGTQLADRYRA G G+N+G GA+SVD+T A
Sbjct: 385 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 444

Query: 434 RSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEY 493
S L DDS H GQS+RFLY KSLN GTN QL+GYRYST G++ D Y M GY+ E
Sbjct: 445 NSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIE- 503

Query: 494 DSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQ 553
DG P Y+NL Y+K+G+ Q+ ++Q LG +LYLSGS Q YW T++ + +Q
Sbjct: 504 TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQ 563

Query: 554 LGYASGWQGISYSLSWSWSESVGISGTDRILAFNMSVPFSVLTGRRYARDTLLDRTYATF 613
G + ++ I+++LS+S +++ G D++LA N+++PFS R + A++
Sbjct: 564 AGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFS--HWLRSDSKSQWRHASASY 621

Query: 614 NANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRS----SSNGYSGSASASWQATYGTLG 669
+ + + +G + GV GTLLE NLSYSV G + ++G +G A+ +++ YG
Sbjct: 622 SMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNAN 681

Query: 670 VGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDW 729
+GY++ D + +SGGV+ HA+G+T QPL DT VL+KAPGAK ++ENQTGV+TDW
Sbjct: 682 IGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDW 741

Query: 730 RGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIIT 789
RGYAV+PYAT YR NRVALDTNT+ ++ D++N V++VVPT GA+VRA F R+G++ ++T
Sbjct: 742 RGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMT 801

Query: 790 ARLGGRPLPFGAIVRETASGVTSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYAL 849
+PLPFGA+V +S + +V D+GQ+YLSG+PL G++ ++WGE +NA C+A Y L
Sbjct: 802 LTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQL 861

Query: 850 AEDSLKQAITIASATC 865
+S +Q +T SA C
Sbjct: 862 PPESQQQLLTQLSAEC 877


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4890HTHFIS702e-16 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 70.2 bits (172), Expect = 2e-16
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 1 MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELP 60
M A++++ D+ +R + L + V T ++ T ++ DLV+ D+ +P
Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIAAGDGDLVVTDVVMP 58

Query: 61 GTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKMI 120
+ F LL RIK + +L +S+++ A +A GA ++ K DL ++ +
Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

Query: 121 LS 122
L+
Sbjct: 119 LA 120


82SeKA_A0015SeKA_A0022N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A00152180.260126phosphate regulon sensor protein PhoR
SeKA_A00162210.212737cation efflux system protein CusA
SeKA_A0017-118-0.126091transcriptional regulator, AraC family protein
SeKA_A0018016-1.097203probable pyridine nucleotide-disulfide
SeKA_A0020015-1.927003hypothetical protein
SeKA_A0019112-0.229556conserved domain protein
SeKA_A0021114-0.542585conserved hypothetical protein
SeKA_A0022012-0.421304heat shock protein DnaJ domain protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0015PF06580331e-04 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 33.3 bits (76), Expect = 1e-04
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 25/104 (24%)

Query: 9 LLSNAMRY----TPPGKTITLRIKEADDQIHIIVENPGTPIAPEHLPRLFDCFYRIDPSR 64
L+ N +++ P G I L+ + + + + VEN G+
Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306

Query: 65 QRKGEGSGIGLAIVKSIVTAHQGK---VSVASDTRATRFILTLP 105
E +G GL V+ + G + ++ ++ +P
Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0016ACRIFLAVINRP647e-16 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 63.7 bits (155), Expect = 7e-16
Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 2 VLRGRSKAMTVSVIIAGLLPVLWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKL 61
+R R MT I G+LP+ GAGS + + ++GGM++A LL++F +P + +
Sbjct: 968 RMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027



Score = 27.9 bits (62), Expect = 0.003
Identities = 9/49 (18%), Positives = 23/49 (46%)

Query: 10 MTVSVIIAGLLPVLWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAA 58
V+ A +P+ + G+ + + + ++ M + L++L + PA
Sbjct: 444 GIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0018FLGPRINGFLGI290.039 Flagellar P-ring protein signature.
		>FLGPRINGFLGI#Flagellar P-ring protein signature.

Length = 373

Score = 29.1 bits (65), Expect = 0.039
Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 15/151 (9%)

Query: 128 GAESVIPAITGLTTTAGVFDSTGLLSLSQRPARLG--ILGGGYIGLEFASMFANFGTKVT 185
GA+ I A+ F + G + + + G I E S F V
Sbjct: 136 GADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPS---KFKDSVN 192

Query: 186 IFEAAPQFLPREDRDIAQAITRILQEKGVELILNANVQAVSSKEGAVQVETPEGAHLVDA 245
+ L D A + ++ + + S+E + V+ P A L
Sbjct: 193 LVLQ----LRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQE--IAVQKPRVADLTRL 246

Query: 246 LLVASGRKPATAGLQLQNAGVAVNERGGIIV 276
+ T A V +NER G IV
Sbjct: 247 MAEIENLTVETD----TPAKVVINERTGTIV 273


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0022RTXTOXIND371e-04 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 37.1 bits (86), Expect = 1e-04
Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 6/192 (3%)

Query: 62 LQTQRALSTWQDPSIAASKLELKALEAQLRDLIDKRNARVQILDDFNDLYHLRLGPLMSR 121
L + Q S+ ++LE + L I+ L D ++ ++
Sbjct: 130 LGAEADTLKTQS-SLLQARLEQTRYQI-LSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187

Query: 122 ILELRKQLAVSMQRKQEAE--IKRREKDYQSCLQFISQAVDQLATLKQQWTGLNAASREA 179
+++Q + +K + E + ++ + + L I++ + K + ++ +
Sbjct: 188 TSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247

Query: 180 VGIRQRIQQQTELITALLAEIRELEADFSHQDDSAFRQAQENAEQDYHQYREQQQEAQFR 239
+ + +Q + E+R ++ Q +S A+E + ++ + + + R
Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLE-QIESEILSAKEEYQLVTQLFKNEILD-KLR 305

Query: 240 YARDQRLSADER 251
D
Sbjct: 306 QTTDNIGLLTLE 317


83SeKA_A0049SeKA_A0054N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0049-2124.829496enterobactin exporter EntS
SeKA_A0050-3144.873088ABC superfamily
SeKA_A0051-2164.560096isochorismate synthase EntC
SeKA_A00520174.2107142,3-dihydroxybenzoate-AMP ligase
SeKA_A00530174.171363isochorismatase
SeKA_A00540153.6133382,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0049TCRTETB290.041 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 29.1 bits (65), Expect = 0.041
Identities = 69/397 (17%), Positives = 130/397 (32%), Gaps = 66/397 (16%)

Query: 27 FISIVSLGLLGVAVPVQIQMMTHSTWQVGLSVTLTGGAMFIGLMVGGVLADRYERKKVIL 86
F S+++ +L V++P T IG V G L+D+ K+++L
Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

Query: 87 LARGTCGIGFIGLCVNSLLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQ 146
G + V ++A ++ G F +L ++ + +EN +
Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL----VMVVVARYIPKENRGK 139

Query: 147 AGAITMLTVRLGSVISPMLGGILLASGGVAWNYGLAAAGTFITLLPLLTLPRLPVPPQPR 206
A + V +G + P +GG++ + W+Y L IT++ + L +L
Sbjct: 140 AFGLIGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIP--MITIITVPFLMKLLKKEVRI 195

Query: 207 ------------------------------------------------ENPFIAL-LAAF 217
+PF+ L
Sbjct: 196 KGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKN 255

Query: 218 RFLLASPLIGGIALLGGLVTMASAVRVLYPALAMSWQMSAAQIGLLYAAI-PLGAAIGAL 276
+ L GGI T+A V ++ + Q+S A+IG + + I
Sbjct: 256 IPFMIGVLCGGIIF----GTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311

Query: 277 TSGQLAHSVRPGLIMLVSTVG---SFLAVGLFAIMPVWIAGVICLALFGWLSAISSLLQY 333
G L P ++ + SFL W +I + + G LS +++
Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371

Query: 334 TLLQTQTPENMLGRMNGLWTAQNVTGDAIGAALLGGL 370
+ + + M L + + G A++GGL
Sbjct: 372 IVSSSLKQQEAGAGM-SLLNFTSFLSEGTGIAIVGGL 407


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0050FERRIBNDNGPP602e-12 Ferrichrome-binding periplasmic protein signature.
		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.

Length = 296

Score = 60.0 bits (145), Expect = 2e-12
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 21/210 (10%)

Query: 105 EPNAETVAAQMPDLILISATGGDSALALYDQLSAIAPTLVINYDDKS-----WQSLLTQL 159
EPN E + P ++ SA G S + L+ IAP N+ D + LT++
Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPS----PEMLARIAPGRGFNFSDGKQPLAMARKSLTEM 141

Query: 160 GEITGQEKQAAARIAEFEAQLTTVKQRIALPPQPVSALVYTPAAHSANLWTPESAQGKLL 219
++ + A +A++E + ++K R L ++ P S ++L
Sbjct: 142 ADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEIL 201

Query: 220 TQLGFTLATLPRGLQTSKSQGKRHDIIQLGGENLAAGLNGESLFLFAGDNKDVAALYANP 279
+ G A + + + + LAA + + L ++KD+ AL A P
Sbjct: 202 DEYGIPNAW--------QGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATP 253

Query: 280 LLAHLPAVQNKRVYALGTETFRLDYYSATL 309
L +P V+ R + F Y ATL
Sbjct: 254 LWQAMPFVRAGRFQRVPAVWF----YGATL 279


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0053ISCHRISMTASE425e-154 Isochorismatase signature.
		>ISCHRISMTASE#Isochorismatase signature.

Length = 312

Score = 425 bits (1095), Expect = e-154
Identities = 148/299 (49%), Positives = 192/299 (64%), Gaps = 18/299 (6%)

Query: 1 MAIPKLQSYALPTALDIPTNKVNWAFEPERAALLIHDMQDYFVSFWGRNCPMMDQVIANI 60
MAIP +Q Y +PTA D+P NKV+W +P RA LLIHDMQ+YFV + + ++ ANI
Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60

Query: 61 AALRQYCKEHHIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQKVVEALTPDEADTV 120
L+ C + IPV YTAQP Q+ +DRALL D WGPGL P ++K++ L P++ D V
Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120

Query: 121 LVKWRYSAFHRSPLEQMLKDTGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALAD 180
L KWRYSAF R+ L +M++ GR+QLIITG+YAHIGC+ TA +AFM DIK F V DA+AD
Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180

Query: 181 FSREEHLMALNYVAGRSGRVVMTESLL------PTPVPASKA-----------ALRALIL 223
FS E+H MAL Y AGR VMT+SLL P V + A +R I
Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240

Query: 224 PLLDETDEPLD-DENLIDYGLDSVRMMGLAARWRKVHGDIDFVMLAKNPTIDAWWALLS 281
LL ET E + E+L+D GLDSVR+M L +WR+ ++ FV LA+ PTI+ W LL+
Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0054DHBDHDRGNASE338e-120 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 338 bits (868), Expect = e-120
Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 20/257 (7%)

Query: 9 KTVWVTGAGKGIGYATALAFVDAGARVIGFDRE---------------FTQENYPFATEV 53
K ++TGA +GIG A A GA + D E +P
Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP----- 63

Query: 54 MDVADAAQVAQVCQRVLQKTPRLDVLVNAAGILRMGATDALSVDDWQQTFAVNVGGAFNL 113
DV D+A + ++ R+ ++ +D+LVN AG+LR G +LS ++W+ TF+VN G FN
Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123

Query: 114 FSQTMAQFRRQQGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGCGVRCN 173
++ G+IVTV S+ A PR M+AY +SKAA +GLELA +RCN
Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183

Query: 174 VVSPGSTDTDMQRTLWVSEDAEQQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLA 233
+VSPGST+TDMQ +LW E+ +Q I+G E FK GIPL K+A+P +IA+ +LFL S A
Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243

Query: 234 SHITLQDIVVDGGSTLG 250
HIT+ ++ VDGG+TLG
Sbjct: 244 GHITMHNLCVDGGATLG 260


84SeKA_A0271SeKA_A0279N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0271-3120.280962ABC-2 type transporter, permease protein
SeKA_A0272-3130.012889inner membrane transport permease YbhS
SeKA_A0273-112-1.276257ABC transporter, ATP-binding protein
SeKA_A0274-113-1.983210membrane protein YbhG
SeKA_A0275012-1.985821transcriptional regulator, TetR family
SeKA_A027609-1.025462transcriptional regulator, LysR family
SeKA_A0277-2200.714884hypothetical protein
SeKA_A0278-3181.830339major facilitator superfamily MFS_1
SeKA_A0279-1162.7234703-oxoacyl-[acyl-carrier-protein] reductase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0271ABC2TRNSPORT461e-07 ABC-2 type transport system membrane protein signat...
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein

signature.
Length = 262

Score = 45.7 bits (108), Expect = 1e-07
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 197 AREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALF 256
R Q T + +L + L I +G+ A A IG+ A + + L+L
Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGA---GIGVVAAALGYTQWLSLL 148

Query: 257 YFTMVI--YGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQN 314
Y VI GL+ G+++++L + + + P + LSG V PV+ +P+ Q
Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208

Query: 315 LTWINPIRHFTDITKQIYL 333
P+ H D+ + I L
Sbjct: 209 AARFLPLSHSIDLIRPIML 227


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0273PF05272320.009 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 32.0 bits (72), Expect = 0.009
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 21/89 (23%)

Query: 294 PRFEDAFIDLLGGAGTSESPLGSILHTVEGTAGETVIEAQELTKKFGDFAATDHVNFVVQ 353
PR E + +LG P + Q + K HV V++
Sbjct: 548 PRLEKWLVHVLGKTPDDYKP-------------RRLRYLQLVGKYI----LMGHVARVME 590

Query: 354 RGEIFG----LLGPNGAGKSTTFKMMCGL 378
G F L G G GKST + GL
Sbjct: 591 PGCKFDYSVVLEGTGGIGKSTLINTLVGL 619



Score = 29.7 bits (66), Expect = 0.043
Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 34 YVTGLVGPDGAGKTTLMRMLAGL 56
Y L G G GK+TL+ L GL
Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0274RTXTOXIND612e-12 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 61.0 bits (148), Expect = 2e-12
Identities = 48/286 (16%), Positives = 104/286 (36%), Gaps = 28/286 (9%)

Query: 55 ASLNVDEGDAIKAGQVLGELDHAPYENALMQAKAGVSVAQAQYDLMLAGYRDEEIAQAAA 114
NV E + L + + ++N Q + + +A+ +LA E
Sbjct: 175 YFQNVSEEEV-LRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233

Query: 115 AVRQAQAAYDYAQNFYNRQQGLWKSRTISA--NDLENARSSRDQAQATLKSAQDKLSQYR 172
R + + + L + N+L +S +Q ++ + SA+++
Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL-V 292

Query: 173 TGNREQDI----AQAKASLEQAKAQLAQAQLDLQDTTLIAPANGTLLTRAV-EPGSMLNA 227
T + +I Q ++ +LA+ + Q + + AP + + V G ++
Sbjct: 293 TQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352

Query: 228 GSTVLTLSLT-RPVWVRAYVDERNLSQTQPGRDILLYTDGRPDKPYH---GKIGFVSPTA 283
T++ + + V A V +++ G++ ++ + P Y GK+ ++ A
Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA 412

Query: 284 EFTPKTVETPDLRTDLVYRLRIIVT-------DADDALRQGMPVTV 322
D R LV+ + I + + + L GM VT
Sbjct: 413 --------IEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTA 450


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0275HTHTETR662e-15 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 65.8 bits (160), Expect = 2e-15
Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 25/224 (11%)

Query: 6 TTTKGEQAKSQLIAAALAQFGEYGLHATT-RDIAALAGQNIAAITYYFGSKEDLYLACAQ 64
T + ++ + ++ AL F + G+ +T+ +IA AG AI ++F K DL+ +
Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64

Query: 65 WIADFLGEKFRPHAEKAERLFSQPAPD-RDAIRELILLACKNMIMLLTQEDTVNLSKFIS 123
+GE E + P R+ + ++ L E + +F+
Sbjct: 65 LSESNIGELEL---EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV- 120

Query: 124 REQLSPTSAYQLVHEQVIDPLHTHLTRLVAA---YTGCDANDTRMILHTHALLGEVLAFR 180
E A + + + D + L + A +I+ + ++
Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIM--RGYISGLM--- 175

Query: 181 LGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGLTQRSLD 224
W + + ++ ++L
Sbjct: 176 ---------ENWLFAPQSFDLK--KEARDYVAILLEMYLLCPTL 208


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0278TCRTETA453e-07 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 45.2 bits (107), Expect = 3e-07
Identities = 59/398 (14%), Positives = 126/398 (31%), Gaps = 46/398 (11%)

Query: 22 LTMIFLVYAINYADRTNIGAVLPFIIDEFHINNFEAGAIASMFFLGYAVSQIP----AGF 77
L +I A++ I VLP ++ + +N + L YA+ Q G
Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLAL-YALMQFACAPVLGA 65

Query: 78 FIAKRGTRGLVSLSIFGFSAFTWLMGTVSSVFSLKMVRLGLGLSEGPCPVGLASTINNWF 137
+ G R ++ +S+ G + +M T ++ L + R+ G++ V + I +
Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV-AGAYIADIT 124

Query: 138 PPKEKATATGVYIAATMFAPIIVPPLAVWIAVTWGWRWVFFSFAIPGIVAAIAWYLLVKS 197
E+A G +++A ++ P+ + + FF+ A + + L+
Sbjct: 125 DGDERARHFG-FMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL-- 181

Query: 198 KPSESGFVSQSELEEINAGRDIHKNTVRENILIADRFTLLDKIIRVKKMAPIDTAKGLFT 257
S G E +N + +A + +
Sbjct: 182 PESHKGERRPLRREALNP------------------LASFRWARGMTVVAAL-----MAV 218

Query: 258 SKNILGDCLAYFMMVSVLYGLLTWIPLYLVKERGFDVMSMGFVASMPCIGGFIGAIGGGW 317
+F+M V ++ +D ++G + G + ++
Sbjct: 219 ----------FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLA---AFGILHSLAQAM 265

Query: 318 ISDKVLGRRRKPTMMFTAISTVVMMLIMLNIPASTWAVCVGLFFVGLCLNIGWPAFTAYG 377
I+ V R + + + I+L W + + IG PA A
Sbjct: 266 ITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA-SGGIGMPALQAML 324

Query: 378 MAVSDTKTYPIASSIINSGGNLGGFVAPMAAGFLLDKT 415
D + + + +L V P+ + +
Sbjct: 325 SRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0279DHBDHDRGNASE1182e-34 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 118 bits (296), Expect = 2e-34
Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 16/255 (6%)

Query: 3 LKDKVAIITGAASARGLGFATAKLFAENGAKVVIIDLNGEAS---EAAAAALGEGHLGLA 59
++ K+A ITGAA +G+G A A+ A GA + +D N E ++ A
Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63

Query: 60 ANVADEVQVQAAIEQIMAKYGRVDVLVNNAGITQPLKLMDIKRANYDAVLDVSLRGTLLM 119
A+V D + +I + G +D+LVN AG+ +P + + ++A V+ G
Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123

Query: 120 SQAVIPVMRAQKSGSIVCISSVSAQRGGGIFGGPHYSAAKAGVLGLARAMARELGPDNVR 179
S++V M ++SGSIV + S A G Y+++KA + + + EL N+R
Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181

Query: 180 VNCITPGLIQTDITAGKLTDE---------MTANILAGIPMNRLGDAVDIARAALFLGSD 230
N ++PG +TD+ DE GIP+ +L DIA A LFL S
Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241

Query: 231 LASYSTGITLDVNGG 245
A + T L V+GG
Sbjct: 242 QAGHITMHNLCVDGG 256


85SeKA_A0326SeKA_A0334N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0326-1111.171702D-alanyl-D-alanine carboxypeptidase DacC
SeKA_A03270130.955456deoxyribose operon repressor
SeKA_A03280111.144128putative undecaprenyl-diphosphatase YbjG
SeKA_A03291111.031715multidrug resistance protein MdtM
SeKA_A03302130.232952phosphatase YbjI
SeKA_A03312120.660342inner membrane protein YbjJ
SeKA_A0332115-0.405802transcriptional regulator, TetR family
SeKA_A03342160.482006putative transporter
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0326BLACTAMASEA475e-08 Beta-lactamase class A signature.
		>BLACTAMASEA#Beta-lactamase class A signature.

Length = 286

Score = 46.7 bits (111), Expect = 5e-08
Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 1 MTQYASSLRSLAAGSVLLFLFASPVKAEEQTIAPPGVDAR-AWILMDYASGKVLAEGNAD 59
M + SL A ++ L + ASP E+ ++ + R I MD ASG+ L AD
Sbjct: 1 MRYIRLCIISLLA-TLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRAD 59

Query: 60 EKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQV 119
E+ S K++ V + AG +L + + +P V D +
Sbjct: 60 ERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSP------VSEKHLADGM 113

Query: 120 SVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTT---FQTVHGLD 176
+V +L I S N A L V G + A+ +++G T ++T
Sbjct: 114 TVGELCAAAITMSDNSAANLLLATVGGPAG-----LTAFLRQIGDNVTRLDRWETELNEA 168

Query: 177 APGQF---STARDMA------LLGKAL 194
PG +T MA L + L
Sbjct: 169 LPGDARDTTTPASMAATLRKLLTSQRL 195


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0329TCRTETB446e-07 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 44.1 bits (104), Expect = 6e-07
Identities = 66/356 (18%), Positives = 127/356 (35%), Gaps = 51/356 (14%)

Query: 48 QAGLDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLATLLAKNIEQ 107
A +WV T+ + G + G LSD++G + ++L G++ + + +
Sbjct: 48 PASTNWVNTAFMLTFSIGTAV---YGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFS 104

Query: 108 FT-FLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWVH 166
RF+QG A+ + + K L+ ++ + +GP +G H
Sbjct: 105 LLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAH 164

Query: 167 VLPWEGMFILFAALAAIAFFGLQRAMPETATRRGE------------------------- 201
+ W +L + I L + + + +G
Sbjct: 165 YIHW-SYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSI 223

Query: 202 ------TLSFKALGRDYRLV---------IKNRRFVAGALALGFVSLPLLAWIAQSPIII 246
LSF + R V KN F+ G L G + + +++ P ++
Sbjct: 224 SFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMM 283

Query: 247 ISGEQLSSYEYG-LLQVPVFGALIAGNLVLARLTSRRTVRSLIVMGGWPIVAGLIIAAAA 305
QLS+ E G ++ P ++I + L RR ++ +G + + A+
Sbjct: 284 KDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTAS-- 341

Query: 306 TVVSSHAYLWMTAGLSVYAFGIGLANAGLVRLTLFSSDMSKGTVSAAMGMLQMLIF 361
+ +MT + V+ G GL+ V T+ SS + + A M +L F
Sbjct: 342 -FLLETTSWFMTIII-VFVLG-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0331TCRTETB330.002 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 33.3 bits (76), Expect = 0.002
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 218 LLIGVVVLAMAFAEGSANDWL-PLLMVDGHGFSP-TSGSLIYAGFTLGMTVGRFTGGWFI 275
+IGV+ + F + + P +M D H S GS+I T+ + + + GG +
Sbjct: 258 FMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILV 317

Query: 276 DRYSRVTVVR-ASALM--GALGIGLIIFVDSDWVA-GVSVILWGLGASLGFPLTISAASD 331
DR + V+ + L ++ S ++ + +L GL + TI ++S
Sbjct: 318 DRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSL 377

Query: 332 TGPDAPTRVSVVATTGYLAFLVGPPLLGYL 361
+A +S++ T +L+ G ++G L
Sbjct: 378 KQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407



Score = 29.1 bits (65), Expect = 0.037
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 38 IRDILSVSTAEMGAVLFGLSIGSMSGILCS---AWLVKRFGTRKVIRTTMTCAVTGMIIL 94
++D+ +STAE+G+V+ + G+MS I+ LV R G V+ +T +
Sbjct: 283 MKDVHQLSTAEIGSVI--IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTA 340

Query: 95 SVALWCASPLIFALGLAVFGASFGAAEVAINVEGAAVERELNKTVLPMMHGFYSFGTLAG 154
S L S + + + V G + I+ V L + +F +
Sbjct: 341 SFLLETTSWFMTIIIVFVLG-GLSFTKTVIS---TIVSSSLKQQEAGAGMSLLNFTSFLS 396

Query: 155 AGVGMALTA--LSVP 167
G G+A+ LS+P
Sbjct: 397 EGTGIAIVGGLLSIP 411


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0332HTHTETR476e-09 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 47.3 bits (112), Expect = 6e-09
Identities = 17/80 (21%), Positives = 33/80 (41%)

Query: 7 RRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQVPLGSMTYYFAGMDALLSEAFT 66
+ + R+ I+ L GV + + +IA A V G++ ++F L SE +
Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64

Query: 67 LFTENMSRQYQDFFAQVTDA 86
L N+ ++ A+
Sbjct: 65 LSESNIGELELEYQAKFPGD 84


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0334TCRTETA310.011 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 31.3 bits (71), Expect = 0.011
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 394 LMIGMITFQFSNFSFGIGNAAGLLFAGIML-GFLRANHPTFG-YIPQ--GALNMVKEFGL 449
L++ + +L+ G ++ G A G YI + FG
Sbjct: 76 LLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGF 135

Query: 450 MVFMAGVGLSAGSGISNGLGAVGGQM--LIAGLVVSLVPVVICFLF 493
M G G+ AG + +G A + L + CFL
Sbjct: 136 MSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181


86SeKA_A0353SeKA_A0359N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A03530151.637146arginine ABC transporter, periplasmic
SeKA_A03541153.179997arginine ABC transporter, ATP-binding protein
SeKA_A03552174.273279YbjP
SeKA_A03562164.323487conserved hypothetical protein
SeKA_A03571154.248120N-acetylmuramoyl-L-alanine amidase AmiD
SeKA_A0358-2194.074696NAD dependent epimerase/dehydratase family
SeKA_A0359-2173.662205NAD dependent epimerase/dehydratase family
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0353FLGFLIH310.004 Flagellar assembly protein FliH signature.
		>FLGFLIH#Flagellar assembly protein FliH signature.

Length = 228

Score = 30.5 bits (68), Expect = 0.004
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 31/119 (26%)

Query: 81 FDAVMAG--MDITPEREKQVLFTTPYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQ 138
D+V+A M + E +QV+ TP DNSAL + QL Q
Sbjct: 112 LDSVIASRLMQMALEAARQVIGQTPTVDNSALI-------KQIQQL-----------LQQ 153

Query: 139 KFIMDKHPEITTVPYDSYQNAKLDLQNGRIDAVFGDTAVVTEW-LKANPKLAPVGDKVT 196
+ + P++ P DLQ R+D + G T + W L+ +P L P G KV+
Sbjct: 154 EPLFSGKPQLRVHPD--------DLQ--RVDDMLGATLSLHGWRLRGDPTLHPGGCKVS 202


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0354PF05272300.007 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 30.4 bits (68), Expect = 0.007
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLTIAGNHFDFTKTPSDKAIREL 80
+VL G G GKS+L+ L L+ S T G D + + EL
Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDF-FSDTHFDIGTGKDSYEQIAGIVAYEL 647


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0358NUCEPIMERASE662e-14 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 66.3 bits (162), Expect = 2e-14
Identities = 69/370 (18%), Positives = 122/370 (32%), Gaps = 71/370 (19%)

Query: 1 MKVLVTGATSGLGRNAVEFLRNKGISVRA---------TGRNEAMGKLLEKMGAEFVHAD 51
MK LVTGA +G + + L G V +A +LL + G +F D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

Query: 52 LTELVSSQAKVMLAGIDTLWHCS-------SFTSPWGTQQAFDLANVRATRRLGEWAVAW 104
L + + ++ S +P A+ +N+ + E
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPH----AYADSNLTGFLNILEGCRHN 116

Query: 105 GVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQT--- 161
+++ ++ SS S+Y + D + +A +K A E L+A
Sbjct: 117 KIQHLLYASSSSVYGL-NRKMPFSTDDSVDHPVSLYAATKKANE----LMAHTYSHLYGL 171

Query: 162 RFTVLRPQSLFGPHDK--VFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLAS 219
T LR +++GP + + + + M S+ + + G D TY ++ A+
Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231

Query: 220 QPGCDHLPS--------------GRAYNITNGENRTLRSIVQKLIDELTIDCRIRSVPYP 265
R YNI N L +Q L D L I+ + +P
Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ 291

Query: 266 MLDMIARSMERFGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDEGIERT 325
D+ T DT + +G+ P T+ +G++
Sbjct: 292 PGDV----------------LETS-----------ADTKALYEVIGFTPETTVKDGVKNF 324

Query: 326 AAWLRDHGNL 335
W RD +
Sbjct: 325 VNWYRDFYKV 334


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0359NUCEPIMERASE552e-10 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 55.2 bits (133), Expect = 2e-10
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 4 RILVLGASGYIGQHLVFALSQQGHQVRA---------AARRVERLEKQRLANVSCHKVDL 54
+ LV GA+G+IG H+ L + GHQV + + RLE HK+DL
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 55 HWPENLPALLRD--IDTVYYLVH------GMGEGGDFIAHERQAALNVRDALRQTPVKQL 106
E + L + V+ H + + LN+ + R ++ L
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121

Query: 107 IFLSS 111
++ SS
Sbjct: 122 LYASS 126


87SeKA_A0492SeKA_A0498N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0492124-5.569872chaperone protein SigE
SeKA_A0493025-4.884744inositol phosphate phosphatase SopB
SeKA_A0494125-4.042961conserved hypothetical protein
SeKA_A0495023-3.149986hypothetical protein
SeKA_A0496017-1.982135peptidase family C69
SeKA_A0497-115-0.949421heavy metal sensor kinase subfamily
SeKA_A0498-2130.184308transcriptional activator protein IrlR
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0492PF078241642e-56 Type III secretion chaperone
		>PF07824#Type III secretion chaperone

Length = 120

Score = 164 bits (417), Expect = 2e-56
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 1 MESLLNRLYAALGLDAPE-DEPLLIIDDGIQVYFNESDHTLEMCCPFMPLPDDTLTLQHF 59
ME L + + ALG+ + + D+ +++DD + +Y + ++ + CPF LP++ L +
Sbjct: 1 MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLLCPFCALPENINDLIYA 60

Query: 60 LRLNYASAVTIGADADNTALVALYRLPQTSTEEEALTGFELFISNVKQLKERYA 113
L LNY+ + + D + +L+A L + E+ E +IS V+ LK+ +A
Sbjct: 61 LSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYYISRVRWLKDEFA 114


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0493TYPE3OMBPROT6550.0 Type III secretion system outer membrane B protein ...
		>TYPE3OMBPROT#Type III secretion system outer membrane B protein

family signature.
Length = 538

Score = 655 bits (1692), Expect = 0.0
Identities = 185/396 (46%), Positives = 254/396 (64%), Gaps = 5/396 (1%)

Query: 166 LNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYQGKGVCSWDTRNIHHANN 225
LNN+ W + ++H+G +Y PA+ MKIG K+IF Y GKG+C TR H N
Sbjct: 146 LNNKNWGPVNKNISHHGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESDHIAN 205

Query: 226 LWMSTVSVHEDGKDKTLFCGIRHGVLSPYH-EKDPLLRQVGAENKAKEVLTAALFSKPEL 284
+W+S V V ++GK+ +F GIRHGV+S Y +K+ R V A NKA+E+++AAL+S+PEL
Sbjct: 206 MWLSKV-VDDEGKE--IFSGIRHGVISAYGLKKNSSERAVAARNKAEELVSAALYSRPEL 262

Query: 285 LNRALAGEAVSLKLVSVGLLTASNIFGKEGTMVEDQMRAWQSL-TQPGKMIHLKIRNKDG 343
L++AL+G+ V LK+VS LLT +++ G E +M++DQ+ A + L ++ G+ L IRN DG
Sbjct: 263 LSQALSGKTVDLKIVSTSLLTPTSLTGGEESMLKDQVNALKGLNSKRGEPTKLLIRNSDG 322

Query: 344 DLQTVKIKPDVAAFNMGVNELTLKLGFGLKASDRYNAEALHQLLGNDLRPEARPGGWVGE 403
L+ V + V FN GVNEL LK+G G + D+ N E++ LLG++ GGW E
Sbjct: 323 LLKEVSVNLKVVTFNFGVNELALKMGLGWRNVDKLNDESICSLLGDNFLKNGVIGGWAAE 382

Query: 404 WLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAHEIDAVPAWNCKSG 463
+ + P V LA QIK+I D GEPYKL+QR+ +LA+ I AVP WNCKSG
Sbjct: 383 AIEKNPPCKNDVIYLANQIKEIINKKLQKNDNGEPYKLSQRMTLLAYTIGAVPCWNCKSG 442

Query: 464 KDRTGMMDSEIKREIISLHQTHMLNAPGSLPDSGGQKIFQKVLLNSGNLEIQKQNTGGAG 523
KDRTGM D+EIKREII H+T + S S +++F +L+NSGN+EIQ+ NTG G
Sbjct: 443 KDRTGMQDAEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPG 502

Query: 524 NKVLKNLSPEVLNLSYQKRIGDENIWQSVKGISSLI 559
NKV+K L L LSY +RIGD IW VKG SS +
Sbjct: 503 NKVMKKLPLSSLELSYSERIGDSKIWNMVKGYSSFV 538


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0497PF06580340.001 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 34.1 bits (78), Expect = 0.001
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 343 ILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLFRRFWRGD 402
+L+Q ++ N + + I + I ++ D+ + V N GS K
Sbjct: 258 MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE-------- 309

Query: 403 NARHTAGFGLGLSLVNA-IALLHGGSASYRYADEHNIFSVRL 443
G GL V + +L+G A + +++ + +
Sbjct: 310 ------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0498HTHFIS832e-20 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 82.6 bits (204), Expect = 2e-20
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
IL+ +D+ + Q L+ AGY V + L++ D+++P + +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117
+L ++ A PV+ ++A+++ +K E GA DYL KPF EL+ + L +
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121


88SeKA_A0582SeKA_A0591N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A05820132.920283basal-body rod modification protein FlgD
SeKA_A0583-2143.055652flagellar hook protein FlgE
SeKA_A0584-1152.529010flagellar basal-body rod protein FlgF
SeKA_A0585-1151.606328flagellar basal-body rod protein FlgG
SeKA_A05861152.640786flagellar L-ring protein FlgH
SeKA_A05872152.626346flagellar P-ring protein FlgI
SeKA_A05882121.468854flagellar rod assembly protein/muramidase FlgJ
SeKA_A05893131.148912flagellar hook-associated protein FlgK
SeKA_A05903131.847192flagellar hook-associated protein 3
SeKA_A05914131.798537ribonuclease E
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0582SYCECHAPRONE290.010 Gram-negative bacterial type III secretion SycE cha...
		>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE

chaperone signature.
Length = 130

Score = 28.5 bits (63), Expect = 0.010
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 44 LKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTT 77
L N+ P N L NN L TQL + V G E+L T+
Sbjct: 89 LWNRQPLNSLDNNSLYTQLEML--VQGAERLQTS 120


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0583FLGHOOKAP1416e-06 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

Length = 546

Score = 41.5 bits (97), Expect = 6e-06
Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 378 LTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 425
L+N S V+L +E N+ Q+ Y +NAQ ++T + I + L+N+R
Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546



Score = 37.6 bits (87), Expect = 7e-05
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 2 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFAD----MFAGSKVGLGVKVAGI 57
+ A+SGLNAA L+ NNI++ G+ T A + AG VG GV V+G+
Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0585FLGHOOKAP1444e-07 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

Length = 546

Score = 43.8 bits (103), Expect = 4e-07
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 3 SSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQTTL 62
S + A +GL+A Q ++ +NN+++ + G+ RQ + + +TL
Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTL 47

Query: 63 PSGLQIGTGVRPVATERLHSQ 83
+G +G GV +R +
Sbjct: 48 GAGGWVGNGVYVSGVQREYDA 68



Score = 41.1 bits (96), Expect = 3e-06
Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 220 ETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL 260
S VN+ EE N+ + Q+ Y N++ + T + + L +
Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0586FLGLRINGFLGH331e-118 Flagellar L-ring protein signature.
		>FLGLRINGFLGH#Flagellar L-ring protein signature.

Length = 232

Score = 331 bits (849), Expect = e-118
Identities = 205/221 (92%), Positives = 216/221 (97%)

Query: 1 MALMVATLTGCAWIPAKPLVQGATTAQPIPGPVPVANGSIFQSAQPINYGYQPLFEDRRP 60
+L+V +LTGCAWIP+ PLVQGAT+AQP+PGP PVANGSIFQSAQPINYGYQPLFEDRRP
Sbjct: 12 SSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDRRP 71

Query: 61 RNIGDTLTIVLQENVSASKSSSANASRDGKTSFGFDTVPRYLQGLFGNSRADMEASGGNS 120
RNIGDTLTIVLQENVSASKSSSANASRDGKT+FGFDTVPRYLQGLFGN+RAD+EASGGN+
Sbjct: 72 RNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNT 131

Query: 121 FNGKGGANASNTFSGTLTVTVDQVLANGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 180
FNGKGGANASNTFSGTLTVTVDQVL NGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG
Sbjct: 132 FNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 191

Query: 181 SNSVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 221
SN+VPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM
Sbjct: 192 SNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0587FLGPRINGFLGI429e-153 Flagellar P-ring protein signature.
		>FLGPRINGFLGI#Flagellar P-ring protein signature.

Length = 373

Score = 429 bits (1104), Expect = e-153
Identities = 153/362 (42%), Positives = 215/362 (59%), Gaps = 9/362 (2%)

Query: 5 LAGIVLALVATLAHAERIRDLTSVQGVRENSLIGYGLVVGLDGTGDQTTQTPFTTQTLNN 64
A L+ A RI+D+ S+Q R+N LIGYGLVVGL GTGD +PFT Q++
Sbjct: 14 SALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRA 73

Query: 65 MLSQLGITVPTGTNMQLKNVAAVMVTASYPPFARQGQTIDVVVSSMGNAKSLRGGTLLMT 124
ML LGIT G + KN+AAVMVTA+ PPFA G +DV VSS+G+A SLRGG L+MT
Sbjct: 74 MLQNLGITTQGGQS-NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMT 132

Query: 125 PLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQLNGGRITNGAIIERELPTQFGAGNT 184
L G D Q+YA+AQG ++V G A +++ R+ NGAIIERELP++F
Sbjct: 133 SLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVN 192

Query: 185 INLQLNDEDFTMAQQITDAINRAR----GYGSATALDARTVQVRVPSGNSSQVRFLADIQ 240
+ LQL + DF+ A ++ D +N G A D++ + V+ P + R +A+I+
Sbjct: 193 LVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV-ADLTRLMAEIE 251

Query: 241 NMEVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVAQGNLSVTVNRQLNVNQPNTPFGGG 300
N+ V T AKVVIN RTG++V+ +V + AV+ G L+V V V QP PF G
Sbjct: 252 NLTVE-TDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQP-APFSRG 309

Query: 301 QTVVTPQTQIDLRQSGGSLQSVRSSANLNSVVRALNALGATPMDLMSILQSMQSAGCLRA 360
QT V PQT I Q G + ++ +L ++V LN++G +++ILQ ++SAG L+A
Sbjct: 310 QTAVQPQTDIMAMQEGSKV-AIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQA 368

Query: 361 KL 362
+L
Sbjct: 369 EL 370


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0588FLGFLGJ4980.0 Flagellar protein FlgJ signature.
		>FLGFLGJ#Flagellar protein FlgJ signature.

Length = 313

Score = 498 bits (1283), Expect = 0.0
Identities = 262/316 (82%), Positives = 289/316 (91%), Gaps = 3/316 (0%)

Query: 1 MIGDGKLLASAAWDAQSLNELKAKAGQDPAANIRPVARQVEGMFVQMMLKSMREALPKDG 60
MI D KLLASAAWDAQSLNELKAKAG+DPAANIRPVARQVEGMFVQMMLKSMR+ALPKDG
Sbjct: 1 MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDG 60

Query: 61 LFSSDQTRLYTSMYDQQIAQQMTAGKGLGLADMMVKQMTGGQTMPADDAPQVPLKFSLET 120
LFSS+ TRLYTSMYDQQIAQQMTAGKGLGLA+MMVKQMT Q +P + P P+KF LET
Sbjct: 61 LFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLET 120

Query: 121 VNSYQNQALTQLVRKAIPKTPDSSDAPLSGDSKDFLARLSLPARLASEQSGVPHHLILAQ 180
V YQNQAL+QLV+KA+P+ D S L GDSK FLA+LSLPA+LAS+QSGVPHHLILAQ
Sbjct: 121 VVRYQNQALSQLVQKAVPRNYDDS---LPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQ 177

Query: 181 AALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTEITTTEYENGEAKKVKAKFRVYN 240
AALESGWGQRQI RENGEPSYN+FGVKA+ +WKGPVTEITTTEYENGEAKKVKAKFRVY+
Sbjct: 178 AALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYS 237

Query: 241 SYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQNAGYATDPNYARKLTSMIQQLKAM 300
SYLEALSDYV LLTRNPRYAAVTTAA+AEQGA ALQ+AGYATDP+YARKLT+MIQQ+K++
Sbjct: 238 SYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKSI 297

Query: 301 SEKVSKTYSANLDNLF 316
S+KVSKTYS N+DNLF
Sbjct: 298 SDKVSKTYSMNIDNLF 313


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0589FLGHOOKAP16630.0 Flagellar hook-associated protein signature.
		>FLGHOOKAP1#Flagellar hook-associated protein signature.

Length = 546

Score = 663 bits (1713), Expect = 0.0
Identities = 438/553 (79%), Positives = 487/553 (88%), Gaps = 8/553 (1%)

Query: 2 SSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYVS 61
SSLIN+AMSGLNAAQAALNT SNNI++YNVAGYTRQTTI+AQANSTLGAGGW+GNGVYVS
Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60

Query: 62 GVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLV 121
GVQREYDAFITNQLR AQ QSSGLT RYEQMSKIDN+L+ +SSL+ +Q FFTSLQTLV
Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120

Query: 122 SNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLND 181
SNAEDPAARQALIGK+EGLVNQFKTTDQYLRDQDKQVNIAIG+SV QINNYAKQIA+LND
Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180

Query: 182 QISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQGSTA 241
QISR+TGVGAGASPN+LLDQRDQLVSELN+IVGVEVSVQDGGTYN+TMANGY+LVQGSTA
Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240

Query: 242 RQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLNTGSLGGLLTFRSQDLDQTRNTLGQL 301
RQLAAVPSSADP+RTTVAYVD AGNIEIPEKLLNTGSLGG+LTFRSQDLDQTRNTLGQL
Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300

Query: 302 ALAFADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQAT 361
ALAFA+AFN QH G+DA+G+ G+DFF+IG P V N+ N V++ A V D++ V AT
Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGD-VAIGATVTDASAVLAT 359

Query: 362 DYKIVFDGTDWQVTRTADNTTFTATKDADGKLEIDGLKVTVGTGVQKNDSFLLKPVSNAI 421
DYKI FD WQVTR A NTTFT T DA+GK+ DGL++T NDSF LKPVS+AI
Sbjct: 360 DYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAI 419

Query: 422 VDMNVKVTNEAEIAMASESKLDPDVDTGDSDNRNGQALLDLQ-NSNVVGGNKTFNDAYAT 480
V+M+V +T+EA+IAMASE D GDSDNRNGQALLDLQ NS VGG K+FNDAYA+
Sbjct: 420 VNMDVLITDEAKIAMASEE------DAGDSDNRNGQALLDLQSNSKTVGGAKSFNDAYAS 473

Query: 481 LVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQ 540
LVSD+GNKT+TLKTSS TQ NVV QL QQQS+SGVNLDEEYGNLQR+QQYYLANAQVLQ
Sbjct: 474 LVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQ 533

Query: 541 TANALFDALLNIR 553
TANA+FDAL+NIR
Sbjct: 534 TANAIFDALINIR 546


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0590FLAGELLIN414e-06 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

Length = 507

Score = 41.2 bits (96), Expect = 4e-06
Identities = 30/138 (21%), Positives = 59/138 (42%)

Query: 1 MRISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPIAASQAVVLSQAQAQNS 60
I+T + + + SQ+ E++S+G R+ + DD + A + +
Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61

Query: 61 QYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQ 120
Q + E L+++ +Q +E V A NGT SD D S+ ++Q ++
Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121

Query: 121 LMNLANSTDGNGRYIFAG 138
+ ++N T NG + +
Sbjct: 122 IDRVSNQTQFNGVKVLSQ 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0591IGASERPTASE551e-09 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 55.1 bits (132), Expect = 1e-09
Identities = 49/259 (18%), Positives = 92/259 (35%), Gaps = 26/259 (10%)

Query: 513 PSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSVATAKKDNVAAAQPAQPGLFSRF 572
P E+ + DVP P+ + A+ D PA P S
Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSN-----NEEIARVDEAPVPPPA-PATPSET 1036

Query: 573 LNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRDNRAGRDGG 632
S +E+KTVE A E + ++ K ++N + +T+ N + G
Sbjct: 1037 TE-TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA-----NTQTNEVAQSGS 1090

Query: 633 ESRDDNRRNRRQAQQQNAETR---DTRQQETAEKVKTGDEQQQTPRRERSRRRNDDKRQA 689
E+++ ++ E + +T + + KV + Q +P++E+S A
Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS----QVSPKQEQSETVQPQAEPA 1146

Query: 690 QQEVKALNREEQPVQETEQEERVQQVQPRRKQRQLNQKVRFTNSAVVETVDTPVVVDEPR 749
++ +N +E Q + QP ++ N + T S V T ++ V E
Sbjct: 1147 RENDPTVNIKEPQSQTNTTAD---TEQPAKETSS-NVEQPVTESTTVNTGNSVVENPENT 1202

Query: 750 PVENVEQPVPAPRTELAKV 768
+ P +E +
Sbjct: 1203 TPATTQ---PTVNSESSNK 1218



Score = 41.2 bits (96), Expect = 3e-05
Identities = 49/356 (13%), Positives = 88/356 (24%), Gaps = 53/356 (14%)

Query: 646 QQQNAETRDTRQQETAEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQE 705
++ +T DT T ++ + E +R E
Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDE------APVPPPAPATPSETTE 1038

Query: 706 TEQEERVQQVQPRRKQRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTEL 765
T E Q+ + K Q + N V + V + E + T+
Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKE-AKSNVKANTQTNEVAQSGSETKETQT 1097

Query: 766 AKVDLPVVADIAPEQDDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP 825
+ A + E+ VE +++ P+ ++ + + +
Sbjct: 1098 TETKET--ATVEKEEKAKVETE-------KTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148

Query: 826 LTVACASPEMASGKVWIRYPIVRPQETQVVEEQREADLALPQPVVAEQQVIAATVALEPQ 885
P V +E Q + AD P
Sbjct: 1149 -----------------NDPTVNIKEPQS-QTNTTADTEQPAKET-------------SS 1177

Query: 886 ASVQAVENVAVEPQTVAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPVAQEVIA- 944
Q V + + PE TT P V + ++ S V V
Sbjct: 1178 NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237

Query: 945 -----DAEPVAETADASITVAENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQ 995
D VA S ++D AV +H ++ + Q
Sbjct: 1238 TTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293



Score = 35.8 bits (82), Expect = 0.001
Identities = 53/291 (18%), Positives = 95/291 (32%), Gaps = 36/291 (12%)

Query: 718 RRKQRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRT---ELAKVDLPVVA 774
+ K R +N + N V E + V N++ VP+ + E+A+VD V
Sbjct: 968 KYKLRNVNGRYDLYNPEV-EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVP 1026

Query: 775 DIAP----EQDDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQ-SPMPLTVA 829
AP E ++V + + Q R ++ + + + VA
Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA 1086

Query: 830 CASPEMASGKVWIRYPIVRPQETQVVEEQREADLALPQPVVAEQQVIAATVALEPQASVQ 889
+ E + +ET VE++ +A V E+ V Q S +
Sbjct: 1087 QSGSETKETQT------TETKETATVEKEEKAK------VETEKTQEVPKVT--SQVSPK 1132

Query: 890 AVENVAVEPQT-----------VAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPV 938
++ V+PQ + EPQ+ +T P + EQP + ES T
Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQP--VTESTTVN 1190

Query: 939 AQEVIADAEPVAETADASITVAENVADVVVVEPEEETKAEAAVVEHTAEET 989
+ + A TV ++ ++ VE +
Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241


89SeKA_A0825SeKA_A0836N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0825027-5.632799response regulator
SeKA_A0826231-7.486270conserved hypothetical protein
SeKA_A0827233-8.084089putative inner membrane protein
SeKA_A0829338-9.601743transcriptional regulator, MerR family protein
SeKA_A0830440-10.623187EsrB
SeKA_A0831338-9.823826secretion system regulator:Sensor component
SeKA_A0832337-8.936057type III secretion outer membrane pore,
SeKA_A0833336-7.947817type III secretion apparatus protein, YscD/HrpQ
SeKA_A0834233-7.260785type III secretion system protein, YseE family
SeKA_A0835332-6.864877secretion system effector SseB
SeKA_A0836337-6.134630type III secretion low calcium response
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0825HTHFIS852e-21 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 84.9 bits (210), Expect = 2e-21
Identities = 31/127 (24%), Positives = 56/127 (44%)

Query: 8 ATIHLLDDDTAVTNACAFLLESLGYDVKCWTQGADFLAQASLYQAGVVLLDMRMPVLDGQ 67
ATI + DDD A+ L GYDV+ + A + +V+ D+ MP +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 68 GVHDALRQCGSTLAVVFLTGHGDVPMAVEQMKRGAVDFLQKPVSVKPLQAALERALTVSS 127
+ +++ L V+ ++ A++ ++GA D+L KP + L + RAL
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 128 AAVARRE 134
++ E
Sbjct: 124 RRPSKLE 130


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0830HTHFIS667e-15 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 66.0 bits (161), Expect = 7e-15
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 1 MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLP 60
M IL+ DD I + AL + V N ++ A + D+++ D+ +P
Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMP 58

Query: 61 GINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQT 119
N D++P++ + P + +LV +A IK GA Y+ K L+ +
Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0831HTHFIS687e-14 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 67.9 bits (166), Expect = 7e-14
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 13/156 (8%)

Query: 691 ILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIEC 750
IL+ DD R ++ + L G V I +++ DLV+ D+ MP+ + +
Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

Query: 751 VQLWHEEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEY 810
+ PD + +SA + + G + Y+ KP L L
Sbjct: 66 LP----RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG-------- 113

Query: 811 QLLRNIELQEQDPSRCSALLAT-DDMVINSKIFQSL 845
+ R + ++ PS+ +V S Q +
Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0832TYPE3OMGPROT5820.0 Type III secretion system outer membrane G protein ...
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

family signature.
Length = 607

Score = 582 bits (1502), Expect = 0.0
Identities = 158/500 (31%), Positives = 261/500 (52%), Gaps = 15/500 (3%)

Query: 11 LLFILNTAKSDELSWKGNDFTLYARQMPLAEVLHLLSENYDTAITISPLITATFSGKIPP 70
LL + + + + EL W + A+ L ++L NYD + +S I SG+
Sbjct: 17 LLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEH 76

Query: 71 GPPVDILNNLAAQYDLLTWFDGSMLYVYPASLLKHQVITFNILSTGRFIHYLRSQNILSS 130
P D L ++A+ Y+L+ ++DG++LY++ S + ++I L+ I
Sbjct: 77 DNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWE- 135

Query: 131 PGCEVKEITGTRAVEVSGVPSCLTRISQLASVLDNALIKR--KDSAVSVSIYTLKYATAM 188
P + R V VSG P L + Q A+ L+ R K A+++ I+ LKYA+A
Sbjct: 136 PRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASAS 195

Query: 189 DTQYQYRDQSVVVPGVVSVL-REMSKTSVPASSTNN-----GSPATQALPMFAADPRQNA 242
D YRD V PGV ++L R +S ++ + +N + A ADP NA
Sbjct: 196 DRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADPSLNA 255

Query: 243 VIVRDYAANMAGYRKLITELDQRQQMIEISVKIIDVNAGDINQLGIDWGTAVSLGG---- 298
+IVRD M Y++LI LD+ IE+++ I+D+NA + +LG+DW + G
Sbjct: 256 IIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQV 315

Query: 299 --KKIAFNTGLNDGGASGFSTVISDTSNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVL 356
K + + GA G + R+N LE A V+S+P+++T N QAV+
Sbjct: 316 VIKTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVI 375

Query: 357 DKNITFYTKLQGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSET 416
D + T+Y K+ G++VA+L+ IT G++LR+TPR+L +I LNL+I+DG Q S
Sbjct: 376 DHSETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 417 DPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQV 476
+ +P + + + + A + GQSL++GG + + + +K+PLLGDIP +G LFR +
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELT 495

Query: 477 HSVIRLFLIKASVVNNGISH 496
+RLF+I+ +++ GI+H
Sbjct: 496 RRTVRLFIIEPRIIDEGIAH 515


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0836SYCDCHAPRONE894e-25 Gram-negative bacterial type III secretion SycD cha...
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

chaperone signature.
Length = 168

Score = 89.2 bits (221), Expect = 4e-25
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 20 TLQQAHDTMRFFRRGGSLRMLL---DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLT 76
T + F + GG++ ML D L LY A + ++ A ++FQ L
Sbjct: 8 TQEYQLAMESFLKGGGTIAMLNEISSDT----LEQLYSLAFNQYQSGKYEDAHKVFQALC 63

Query: 77 IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 136
+ D + ++ LG C QA + AI++Y A + I P+ P+ AAEC L + A
Sbjct: 64 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123

Query: 137 IKALKAVVRICGEVSEHQILRLRAEKMLQQLSDR 170
L + + +E + L R ML+ + +
Sbjct: 124 ESGLFLAQELIADKTEFKELSTRVSSMLEAIKLK 157


90SeKA_A0855SeKA_A0865N        Y        YPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A0855333-7.907350type III secretion apparatus protein, YscQ/HrcQ
SeKA_A0856127-7.252780type III secretion apparatus protein, YscR/HrcR
SeKA_A0857-122-6.283086secretion system apparatus protein SsaS
SeKA_A0858019-4.555471type III secretion apparatus protein
SeKA_A0859-114-2.142768secretion system apparatus protein SsaU
SeKA_A0862-2100.272089**multidrug resistance protein NorM
SeKA_A0863-210-0.075034riboflavin synthase, alpha subunit
SeKA_A0864011-0.157021cyclopropane-fatty-acyl-phospholipid synthase
SeKA_A08650130.720644inner membrane transport protein YdhC
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0855TYPE3OMOPROT533e-10 Type III secretion system outer membrane O protein ...
		>TYPE3OMOPROT#Type III secretion system outer membrane O protein

family signature.
Length = 303

Score = 53.5 bits (128), Expect = 3e-10
Identities = 17/69 (24%), Positives = 32/69 (46%)

Query: 247 LEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGN 306
L Q+P ++ F + R ++ + +L + +L + V I N ++G GEL+ +
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286

Query: 307 EFMVRITRW 315
V I W
Sbjct: 287 TLGVEIHEW 295


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0856TYPE3IMPPROT2319e-80 Type III secretion system inner membrane P protein ...
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein

family signature.
Length = 224

Score = 231 bits (592), Expect = 9e-80
Identities = 79/215 (36%), Positives = 130/215 (60%), Gaps = 8/215 (3%)

Query: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67
+ LI +L ++LP II GT F+K ++VF ++RNALG+QQ+P N+ L G+AL+LS+F+M
Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64

Query: 68 GPTLLAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWP 126
P + + V + S+ + L YR +L K S+ + +F N +
Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124

Query: 127 ED-------IKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG 179
+ K +I+ S+ L+PA+ +S++ AF+IG +YLPF+ +DL++S++LLA+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 180 MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214
MMM+SP+TIS P KL++F+ GW L L+ +
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0857TYPE3IMQPROT312e-05 Type III secretion system inner membrane Q protein ...
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

family signature.
Length = 86

Score = 31.3 bits (71), Expect = 2e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 1 MIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG 37
IKLL + + L + W +LL+Y RQ++ G
Sbjct: 50 GIKLLGVCLCLFLLSGWYGEVLLSYGRQVIFLALAKG 86


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0858TYPE3IMRPROT1643e-52 Type III secretion system inner membrane R protein ...
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

family signature.
Length = 261

Score = 164 bits (418), Expect = 3e-52
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 5/229 (2%)

Query: 8 WLIALAVDFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIMMHIGKD 67
WL +R L+L P+L S+ ++ G+ M +TF I P + + +
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPANDVPVF---S 67

Query: 68 YSWLGLVTGEVIIGFLIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTMEAETSLFGL 127
+ L L +++IG +GF F AV AG ++ G + T + +
Sbjct: 68 FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127

Query: 128 LFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDRQFLKYIQAEWRTLYQLCVSF 187
+ ++F G +++++L +++ LP G L FL +A ++ +
Sbjct: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSL-IFLNGLML 186

Query: 188 SVPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFPY 236
++P I ++ +LALGLLNR A QL++F PL + + + P
Sbjct: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPL 235


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0859TYPE3IMSPROT386e-136 Type III secretion system inner membrane S protein ...
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

family signature.
Length = 354

Score = 386 bits (992), Expect = e-136
Identities = 125/350 (35%), Positives = 203/350 (58%), Gaps = 4/350 (1%)

Query: 2 SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ 61
EKTEQPT KK+RD RK+GQV KS E+ S ++AL ++ + + +
Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62

Query: 62 LVNKPFSYALTQL-SHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH 120
PFS AL+ + + L+E L ++A + S +Q G +I+ +AI +
Sbjct: 63 QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMA-IASHVVQYGFLISGEAIKPDIKK 121

Query: 121 INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS 180
INP+ K+IFS+ S+VE KS LKV++LS++ T LP CG+ C ++
Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181

Query: 181 SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM 240
+++ L V ++V+ I DY+F+YY+ K+LKMSKD++K+E+K++EG P++K++RR+
Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241

Query: 241 QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER 300
EIQS ++ ++VK+S VV NPTHIA+ + Y + P+P V K +DAQ + IAE
Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEE 301

Query: 301 NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMK--IDYAHS 348
+P+++ + LAR+L+++ IP E A +LR + + I+ HS
Sbjct: 302 EGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHS 351


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A0865TCRTETB763e-17 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 76.1 bits (187), Expect = 3e-17
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 3/194 (1%)

Query: 8 LVWLAGLSVLGFLATDMYLPAFAAIQADLQTPAAAVSASLSLFLAGFAVAQLLWGPLSDR 67
L+WL LS L + + I D P A+ + + F+ F++ ++G LSD+
Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75

Query: 68 YGRKPILLLGLSIFALGSLGMLWVESAAALLTL-RFVQAVGVCAATVIWQALVTDYYPSQ 126
G K +LL G+ I GS+ S +LL + RF+Q G A + +V Y P +
Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135

Query: 127 KINRIFATIMPLVGLSPALAPLLGSWILTHFSWQAIFATLFVITLLLMLPALRLKPSVKA 186
+ F I +V + + P +G I + W + L + ++ +P L +
Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEV 193

Query: 187 RTEGQDKLTFATLL 200
R +G + L+
Sbjct: 194 RIKGHFDIKGIILM 207


91SeKA_A1150SeKA_A1156N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A11500130.924698phage shock protein B
SeKA_A1151-1130.682255phage shock protein A
SeKA_A1152-2130.945529psp operon transcriptional activator
SeKA_A1153-3120.314440peptide transport periplasmic protein SapA
SeKA_A1154-215-1.990401peptide transport system permease protein SapB
SeKA_A1155-117-3.202276peptide ABC transporter, permease protein SapC
SeKA_A1156-215-4.049934peptide ABC transporter, ATP-binding protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1150MPTASEINHBTR260.015 Metalloprotease inhibitor signature.
		>MPTASEINHBTR#Metalloprotease inhibitor signature.

Length = 122

Score = 25.7 bits (56), Expect = 0.015
Identities = 6/43 (13%), Positives = 14/43 (32%)

Query: 30 AGRGELSQSEQQRLLQLTDDAQRMRERIQALEDILDAEHPNWR 72
AG+ + + + A + + E L + +W
Sbjct: 37 AGQLGIEATGSGVCAGPAEQANALAGDVACAEQWLGDKPVSWS 79


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1151RTXTOXIND270.044 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 27.5 bits (61), Expect = 0.044
Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 40 LVEVRSNSARALAEKKQLSR-RIEQATAQQIEWQEKAELA-LRKDKDDLARAALIEKQKL 97
+ + R + +L K+ +++ + + + +E EL + + + L K++
Sbjct: 232 VEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV--NELRVYKSQLEQIESEILSAKEEY 289

Query: 98 TDLIATLEQEVTLVDDTLARMKKEIGELENKLSETRARQQALMLR 142
+ + E+ D L + IG L +L++ RQQA ++R
Sbjct: 290 QLVTQLFKNEIL---DKLRQTTDNIGLLTLELAKNEERQQASVIR 331


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1152HTHFIS345e-118 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 345 bits (886), Expect = e-118
Identities = 125/345 (36%), Positives = 176/345 (51%), Gaps = 22/345 (6%)

Query: 7 AEFKDNLLGEANRFLEVLEQVSRLAPLDKPVLIIGERGTGKELIANRLHYLSSRWQGPLI 66
++ L+G + E+ ++RL D ++I GE GTGKEL+A LH R GP +
Sbjct: 133 SQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFV 192

Query: 67 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLL 126
++N AA+ +L++SELFGHE GAFTGAQ R GRFE+A+GGTLFLDE+ PM Q +LL
Sbjct: 193 AINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLL 252

Query: 127 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVKEGTFRADLLDRLAFDVVQLPPLRE 186
RV++ GE VGG P++ +VR+V ATN DL + +G FR DL RL ++LPPLR+
Sbjct: 253 RVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRD 312

Query: 187 RQSDIMLMAEHFAIQMCRELRLPLFPGFTDRAKETLLHYAWPGNVRELKNVVERSVYRHG 246
R DI + HF Q +E F A E + + WPGNVREL+N+V R +
Sbjct: 313 RAEDIPDLVRHFVQQAEKEGLDVK--RFDQEALELMKAHPWPGNVRELENLVRRLTALYP 370

Query: 247 SSE--------HPLDEIVIDPFQRHPA------------EPPAPALPSASATPDLPLKLR 286
EI P ++ A E S
Sbjct: 371 QDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYD 430

Query: 287 EFQLQQEKALLQRSLQQAKFNQKRAADLLALTYHQFRALLKKHQL 331
+ E L+ +L + NQ +AADLL L + R +++ +
Sbjct: 431 RVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1156HTHFIS310.007 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 31.0 bits (70), Expect = 0.007
Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 38 LVGESGSGKSLIAKAI 53
+ GESG+GK L+A+A+
Sbjct: 165 ITGESGTGKELVARAL 180


92SeKA_A1236SeKA_A1239N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1236-1110.178837nitrite extrusion protein 1
SeKA_A1237-215-0.692647nitrate/nitrite sensor protein NarX
SeKA_A1238-315-0.757256nitrate/nitrite response regulator protein NarL
SeKA_A1239-212-1.421867conserved hypothetical protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1236TCRTETB300.025 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 29.8 bits (67), Expect = 0.025
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 128 TPFSTFIIISLLCGFAGANF-ASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLV 184
+ FS I+ + G A F A M ++ + PK+ +G A GL G + MG V +
Sbjct: 101 SFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1237PF06580514e-09 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 51.4 bits (123), Expect = 4e-09
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 17/123 (13%)

Query: 473 SARFGFTVKLDYQLPPRL----VPSHQAIHLLQIAREALSNALKH-----SHADDVVVTV 523
S +F ++ + Q+ P + VP L+Q E N +KH +++
Sbjct: 233 SIQFEDRLQFENQINPAIMDVQVPPM----LVQTLVE---NGIKHGIAQLPQGGKILLKG 285

Query: 524 TQCGKQVKLKVQDNGCGVPENAERSNHYGMIIMRDRAQSLRG-DCQVRRRETGGTEVTVT 582
T+ V L+V++ G +N + S G+ +R+R Q L G + Q++ E G +
Sbjct: 286 TKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345

Query: 583 FIP 585
IP
Sbjct: 346 LIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1238HTHFIS726e-17 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 72.2 bits (177), Expect = 6e-17
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 7 ATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQGIDLAESLDPDLILLDLNMPGMN 66
ATIL+ DD +RT + Q +S A V SN + D DL++ D+ MP N
Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61

Query: 67 GLETLDKLREKALSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQA 123
+ L ++++ ++V S N + A ++GA YL K + +L+ + +A
Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1239INTIMIN2492e-75 Intimin signature.
		>INTIMIN#Intimin signature.

Length = 939

Score = 249 bits (637), Expect = 2e-75
Identities = 126/444 (28%), Positives = 215/444 (48%), Gaps = 24/444 (5%)

Query: 57 SFSLSLLLLAASGTIRAQAQDPFTQNRL----PDLGMMPESHEGEKHFAEMAKAFGEASM 112
F S L L S + A N+L PD+ + + ++A A + +
Sbjct: 118 PFEYSALPLLGSAPLVAAGGVAGHTNKLTKMSPDVTKSNMTDDKALNYAAQQAASLGSQL 177

Query: 113 KNNDLDTGEQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDINVDNEGHFNGSRGSW 172
++ L+ G+ A+ A G + Q + QL++WL +G+A V++ N F+GS +
Sbjct: 178 QSRSLN-GDYAKDTALG----IAGNQASSQLQAWLQHYGTAEVNLQSGNN--FDGSSLDF 230

Query: 173 FIPLQDKQRYLTWSQLGLTQQTDGLVSNIGVGQRWAQDGWLLGYNTFYDNLLDENLQRAG 232
+P D ++ L + Q+G +N+G GQR+ +LGYN F D + R G
Sbjct: 231 LLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLG 290

Query: 233 FGAEAWGEYLRLSANYYQPFADWQT--HTATLEQRMARGYDINAQMRLPFYQHINTSVSL 290
G E W +Y + S N Y + W + ++R A G+DI LP Y + +
Sbjct: 291 IGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIRFNGYLPSYPALGAKLMY 350

Query: 291 EQYFGDSVDLFDSGTGYHNPVALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYR 350
EQY+GD+V LF+S NP A +G+NYTP+PL+TM ++ G + + Y+
Sbjct: 351 EQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGTGNENDLLYSMQFRYQ 410

Query: 351 FGVPLKKQLAASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGET 410
F P +Q+ V + ++L GSRYD QRN+ +EY+++ L++ + + T T
Sbjct: 411 FDKPWSQQIEPQYVNELRTLSGSRYDLVQRNNNIILEYKKQDILSLNI-PHDINGTERST 469

Query: 411 VALKLQVRSVHGIRHLSWQGDTQALSLTAG----TDTRSTEGWTIIMPAWDHREGAVNRW 466
++L V+S +G+ + W D AL G + ++S + + I+PA+ +G N +
Sbjct: 470 QKIQLIVKSKYGLDRIVW--DDSALRSQGGQIQHSGSQSAQDYQAILPAY--VQGGSNVY 525

Query: 467 RLSVVVEDEKGQRVSSNEITLALT 490
+++ D G SSN + L +T
Sbjct: 526 KVTARAYDRNGN--SSNNVLLTIT 547


93SeKA_A1451SeKA_A1459N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1451-2121.553254chemotaxis response regulator CheY
SeKA_A1452-1101.860470chemotaxis response regulator protein-glutamate
SeKA_A1453-1101.616886chemotaxis protein methyltransferase CheR
SeKA_A14540101.396422methyl-accepting chemotaxis protein II
SeKA_A1455-1110.399363hypothetical protein
SeKA_A1456-111-0.011974purine binding chemotaxis protein
SeKA_A1457-112-0.110020chemotaxis protein CheA
SeKA_A1458-212-1.317809chemotaxis protein MotB
SeKA_A1459-116-1.398102chemotaxis protein MotA
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1451HTHFIS897e-24 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 88.7 bits (220), Expect = 7e-24
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGL 66
LV DD + +R ++ L G++ V + + AG +++D MP+ +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 67 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPF 111
+LL I+ LPVL+++A+ I A++ GA Y+ KPF
Sbjct: 64 DLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1452HTHFIS667e-14 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 65.6 bits (160), Expect = 7e-14
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 6/142 (4%)

Query: 1 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMP 60
M+ +L DD A +R ++ + ++ V + I + D++ DV MP
Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58

Query: 61 RMDGLDFLEKLMRLRPMPVVMVSSLTGKGS-EVTLRALELGAIDFVTKPQLGIREGMLAY 119
+ D L ++ + RP V+V ++ + + ++A E GA D++ KP + E +
Sbjct: 59 DENAFDLLPRIKKARPDLPVLV--MSAQNTFMTAIKASEKGAYDYLPKP-FDLTELIGII 115

Query: 120 SEMIAEKVRTAARARIAAHKPM 141
+AE R ++ + M
Sbjct: 116 GRALAEPKRRPSKLEDDSQDGM 137


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1457PF06580427e-06 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 41.8 bits (98), Expect = 7e-06
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 52/151 (34%)

Query: 378 ELDKSLIERIIDPLT--HLVRNSLDHGIEMPEKRLEAGKNVVGNLILSAEHQGGNICIEV 435
+++ ++++ + P+ LV N + HGI G ++L G + +EV
Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296

Query: 436 TDDGAGLNRERILAKAMSQGMAVNENMTDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVV 495
+ G+ + G G+ V
Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318

Query: 496 KRNIQEMGG---HVEIQSKQGSGTTIRILLP 523
+ +Q + G +++ KQG +L+P
Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1458OMPADOMAIN421e-06 OMPA domain signature.
		>OMPADOMAIN#OMPA domain signature.

Length = 346

Score = 42.2 bits (99), Expect = 1e-06
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 162 FKTGSAEVEPYMRDILRAIAPVL---NGIPNRISLAGHTDDFPYANGEKGYSNWELSADR 218
F A ++P + L + L + + + G+TD G Y N LS R
Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI----GSDAY-NQGLSERR 277

Query: 219 ANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRR--ISLLVLNKQAEQAI 274
A + L++ G+ K+ GM + ++ D+ R I L +++ E +
Sbjct: 278 AQSVVDYLISKGIPADKI-SARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1459PF05844320.002 YopD protein
		>PF05844#YopD protein

Length = 295

Score = 31.9 bits (72), Expect = 0.002
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)

Query: 76 MDLLALLYRLMAKSRQQGMFSLERDIEN 103
++LL +L+R+ K+R+ G+ L+RD EN
Sbjct: 74 VELLLILFRIAQKARELGV--LQRDNEN 99


94SeKA_A1502SeKA_A1519N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1502-1131.204464putative membrane protein
SeKA_A1503-2150.584970conserved hypothetical protein
SeKA_A1504-1112.002410putative 50S ribosomal protein
SeKA_A1505-1134.208162flagellar hook-basal body complex protein
SeKA_A15060133.873503conserved hypothetical protein
SeKA_A15070135.163869flagellar M-ring protein FliF
SeKA_A15080155.275822flagellar motor switch protein FliG
SeKA_A1509-1164.791800flagellar assembly protein FliH
SeKA_A1510-2154.113742flagellar protein export ATPase FliI
SeKA_A15111153.464700flagellar protein FliJ
SeKA_A1512-1163.495522flagellar hook-length control protein
SeKA_A1513-1141.179890flagellar basal body-associated protein FliL
SeKA_A15140130.431647flagellar motor switch protein FliM
SeKA_A1515015-2.318586flagellar motor switch protein FliN
SeKA_A1516016-2.718869flagellar protein FliO
SeKA_A1517017-4.269019flagellar biosynthetic protein FliP
SeKA_A1518018-3.695614flagellar biosynthetic protein FliQ
SeKA_A1519-216-2.389112flagellar biosynthetic protein FliR
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1502RTXTOXIND290.025 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 29.4 bits (66), Expect = 0.025
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 164 RFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRF--RLGMLVFIGMIGWALLT 214
R L R + + + A L + P R R M + ++L
Sbjct: 26 RKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLG 78


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1503PF01206936e-29 SirA family protein
		>PF01206#SirA family protein

Length = 76

Score = 92.5 bits (230), Expect = 6e-29
Identities = 16/71 (22%), Positives = 37/71 (52%)

Query: 7 DYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQ 66
D LD G CP P + + + + GE+L V++ P S+ + ++ G+ +L+ ++
Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64

Query: 67 DGPTIRYLIQK 77
+ T + +++
Sbjct: 65 EDGTYHFRLKR 75


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1505FLGHOOKFLIE1102e-35 Flagellar hook-basal body complex protein FliE signa...
		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE

signature.
Length = 103

Score = 110 bits (277), Expect = 2e-35
Identities = 90/103 (87%), Positives = 95/103 (92%)

Query: 2 AAIQGIEGVISQLQATAMAASGQETHSQSTVSFAGQLHAALDRISDRQTAARVQAEKFTL 61
+AIQGIEGVISQLQATAM+A QE+ Q T+SFAGQLHAALDRISD QTAAR QAEKFTL
Sbjct: 1 SAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTL 60

Query: 62 GEPGIALNDVMADMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 104
GEPG+ALNDVM DMQKASVSMQMGIQVRNKLVAAYQEVMSMQV
Sbjct: 61 GEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1507FLGMRINGFLIF7910.0 Flagellar M-ring protein signature.
		>FLGMRINGFLIF#Flagellar M-ring protein signature.

Length = 559

Score = 791 bits (2043), Expect = 0.0
Identities = 558/559 (99%), Positives = 559/559 (100%)

Query: 21 SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQ 80
SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQ
Sbjct: 1 SATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQ 60

Query: 81 DGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKF 140
DGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKF
Sbjct: 61 DGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKF 120

Query: 141 GISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLE 200
GISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLE
Sbjct: 121 GISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLE 180

Query: 201 PGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDV 260
PGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDV
Sbjct: 181 PGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDV 240

Query: 261 ESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNIS 320
ESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNIS
Sbjct: 241 ESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNIS 300

Query: 321 EQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRN 380
EQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRN
Sbjct: 301 EQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRN 360

Query: 381 ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMG 440
ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMG
Sbjct: 361 ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMG 420

Query: 441 FSDKRGDTLNVVNSPFSAVDDTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR 500
FSDKRGDTLNVVNSPFSAVD+TGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR
Sbjct: 421 FSDKRGDTLNVVNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR 480

Query: 501 PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 560
PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD
Sbjct: 481 PQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSD 540

Query: 561 NDPRVVALVIRQWMSNDHE 579
NDPRVVALVIRQWMSNDHE
Sbjct: 541 NDPRVVALVIRQWMSNDHE 559


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1508FLGMOTORFLIG339e-118 Flagellar motor switch protein FliG signature.
		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

Length = 344

Score = 339 bits (870), Expect = e-118
Identities = 114/329 (34%), Positives = 196/329 (59%), Gaps = 2/329 (0%)

Query: 1 MSNLSGTDKSVILLMTIGEDRAAEVFKHLSTREVQALSTAMANVRQISNKQLTDVLSEFE 60
+S L+G K+ ILL++IG + +++VFK+LS E+++L+ +A + I+++ +VL EF+
Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71

Query: 61 QEAEQFAALNINANEYLRSVLVKALGEERASSLLEDILETRDTTSGIETLNFMEPQSAAD 120
+ + +Y R +L K+LG ++A ++ + L + + E + +P + +
Sbjct: 72 ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINN-LGSALQSRPFEFVRRADPANILN 130

Query: 121 LIRDEHPQIIATILVHLKRSQAADILALFDERLRHDVMLRIATFGGVQPAALAELTEVLN 180
I+ EHPQ IA IL +L +A+ IL+ ++ +V RIA P + E+ VL
Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190

Query: 181 GLLDGQ-NLKRSKMGGVRTAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMFLFENL 239
L + + GGV EIIN+ + E+ +I ++ E D ELA++I +MF+FE++
Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250

Query: 240 VDVDDRSIQRLLQEVDSESLLIALKGAEPPLREKFLRNMSQRAADILRDDLANRGPVRLS 299
V +DDRSIQR+L+E+D + L ALK + P++EK +NMS+RAA +L++D+ GP R
Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRK 310

Query: 300 QVENEQKAILLIVRRLAETGEMVIGSGED 328
VE Q+ I+ ++R+L E GE+VI G +
Sbjct: 311 DVEESQQKIVSLIRKLEEQGEIVISRGGE 339


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1509FLGFLIH367e-133 Flagellar assembly protein FliH signature.
		>FLGFLIH#Flagellar assembly protein FliH signature.

Length = 228

Score = 367 bits (944), Expect = e-133
Identities = 192/235 (81%), Positives = 209/235 (88%), Gaps = 7/235 (2%)

Query: 1 MSNELPWQVWTPDDLAPPPETFVPVEADNVTLTDDTPEPELTAEQQLEQELAQLKIQAHE 60
MS+ LPW+ WTPDDLAPP FVP+ T+ ++ AE LEQ+LAQL++QAHE
Sbjct: 1 MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEE-------AEPSLEQQLAQLQMQAHE 53

Query: 61 QGYNAGLAEGRQKGHAQGYQEGLAQGLEQGQAQAQTQQAPIHARMQQLVSEFQNTLDALD 120
QGY AG+AEGRQ+GH QGYQEGLAQGLEQG A+A++QQAPIHARMQQLVSEFQ TLDALD
Sbjct: 54 QGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALD 113

Query: 121 SVIASRLMQMALEAARQVIGQTPAVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRV 180
SVIASRLMQMALEAARQVIGQTP VDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRV
Sbjct: 114 SVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRV 173

Query: 181 EEMLGATLSLHGWRLRGDPTLHHGGCKVSADEGDLDASVATRWQELCRLAAPGVL 235
++MLGATLSLHGWRLRGDPTLH GGCKVSADEGDLDASVATRWQELCRLAAPGV+
Sbjct: 174 DDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQELCRLAAPGVV 228


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1511FLGFLIJ2064e-72 Flagellar FliJ protein signature.
		>FLGFLIJ#Flagellar FliJ protein signature.

Length = 147

Score = 206 bits (526), Expect = 4e-72
Identities = 130/147 (88%), Positives = 138/147 (93%)

Query: 1 MAQHGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNG 60
MA+HGAL TLKDLAEKEV+DAARLLGEMRRGCQQAEEQLKMLIDYQNEYR+NLN+DM G
Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

Query: 61 IASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTA 120
I SNRWINYQQFIQTLEKAI QHR QL QWTQKVD+AL SWREKKQRLQAWQTLQ+RQ+
Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

Query: 121 AALLAENRMDQKKMDEFAQRAAMRKPE 147
AALLAENR+DQKKMDEFAQRAAMRKPE
Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRKPE 147


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1512FLGHOOKFLIK403e-142 Flagellar hook-length control protein signature.
		>FLGHOOKFLIK#Flagellar hook-length control protein signature.

Length = 375

Score = 403 bits (1037), Expect = e-142
Identities = 192/411 (46%), Positives = 232/411 (56%), Gaps = 40/411 (9%)

Query: 1 MITLPQLITTDTDMTAGLTSGKTTGSAEDFLALLAGALGADGAQGKDARITLADLQAAGG 60
MI L LIT D D T L GK + +A+DFLALL+ AL + K A L
Sbjct: 1 MIRLAPLITADVDTTT-LPGGKASDAAQDFLALLSEALAGETTTDKAAPQLL-------- 51

Query: 61 KLSKELLTQHGEPGQAVKLADLLAQKAN---ATDGTLTDLTQAQHLLSTLTPSLKTSALA 117
++ + T GEP + ++D AQ+AN D T + Q + LT + + A
Sbjct: 52 -VATDKPTTKGEPLISDIVSD--AQQANLLIPVDETPPVINDEQSTSTPLTTAQTMALAA 108

Query: 118 ALSKTAQHDEKTPALSDEDLASLSALFAMLPGQPVATPVAGETPAENHIALPSLLRGDMP 177
K DEK L+++ ASLSALFAMLPG V D P
Sbjct: 109 VADKNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVT-----------------DAP 151

Query: 178 SAPQEETHTLSFSEHEKGKTEASLARASDDRATGPSLTPLVVAAAATSAKVEVDSPPAPV 237
S F++ T L A D A G PL A +K EV S P+PV
Sbjct: 152 STVLPTEKPTLFTK----LTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPV 207

Query: 238 THGAAMPTLSSATAQPQPLPVASAPVLSAPLGSHEWQQTFSQQVMLFTRQGQQSAQLRLH 297
T AA P ++ QP LP +APVLSAPLGSHEWQQ+ SQ + LFTRQGQQSA+LRLH
Sbjct: 208 T-AAASPLITPHQTQP--LPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLH 264

Query: 298 PEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSES 357
P++LG+V ISLK+DDNQAQ+QMVSPH HVRAALEAALP+LRTQLAESGIQLGQS+IS ES
Sbjct: 265 PQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGES 324

Query: 358 FAGQQQ-SSSQQQSARAQHPDAFGAEDDIALAAPASLQAAARGNGAVDIFA 407
F+GQQQ +S QQQS R + + EDD L P SLQ GN VDIFA
Sbjct: 325 FSGQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA 375


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1514FLGMOTORFLIM383e-135 Flagellar motor switch protein FliM signature.
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

Length = 344

Score = 383 bits (985), Expect = e-135
Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 10/324 (3%)

Query: 5 ILSQAEIDALLNGDS--DTKDEPTPGIASDSDIRPYDPNTQRRVVRERLQALEIINERFA 62
+LSQ EID LL S D E I+ I YD + +E+++ L +++E FA
Sbjct: 4 VLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63

Query: 63 RQFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSL 122
R L LR + V ++ Y EF R++P P+ L +I + PL+G ++ PS+
Sbjct: 64 RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSI 123

Query: 123 VFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRS 182
F +D LFGG G+ KV+ R+ T E V+ ++ L ++W + L +
Sbjct: 124 TFSIIDRLFGGTGQ-AAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181

Query: 183 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENS--R 240
E +F I P+++VV ++G G N C+P+ IEP+ L + +S R
Sbjct: 182 ETNPQFAQI-VPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240

Query: 241 HEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP---DRIIAHVD 297
+ L ++ ++++VA + L + IL L+ GD++ + D + +
Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300

Query: 298 GVPVLTSQYGTVNGQYSLRVEHLI 321
Q G V + + ++ I
Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1515FLGMOTORFLIN2114e-74 Flagellar motor switch protein FliN signature.
		>FLGMOTORFLIN#Flagellar motor switch protein FliN signature.

Length = 137

Score = 211 bits (538), Expect = 4e-74
Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60
MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI
Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDI 60

Query: 61 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120
PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV
Sbjct: 61 PVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGV 120

Query: 121 RITDIITPSERMRRLSR 137
RITDIITPSERMRRLSR
Sbjct: 121 RITDIITPSERMRRLSR 137


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1517FLGBIOSNFLIP330e-117 Escherichia coli: Flagellar biosynthetic protein Fl...
		>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP

signature.
Length = 245

Score = 330 bits (847), Expect = e-117
Identities = 225/245 (91%), Positives = 233/245 (95%)

Query: 1 MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60
MRRLL ++ LWL +P A AQLPG+ SQPL GGGQSWSL VQTLVFITSLTF+PAILLM
Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120
MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE+K
Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMRILLPAYVTSELK 180
ISMQEAL+KGAQPLR FMLRQTREADL LFARLAN+GPLQGPEAVPMRILLPAYVTSELK
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180

Query: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA
Sbjct: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240

Query: 241 QSFYS 245
QSFYS
Sbjct: 241 QSFYS 245


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1518TYPE3IMQPROT671e-18 Type III secretion system inner membrane Q protein ...
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

family signature.
Length = 86

Score = 67.5 bits (165), Expect = 1e-18
Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 4 ESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQINEMTLSFIPKIVAVFIAII 63
+ ++ G +A+ + L L+ +VA I GL++ + Q TQ+ E TL F K++ V + +
Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61

Query: 64 VAGPWMLNLLLDYVRTLF 81
+ W +LL Y R +
Sbjct: 62 LLSGWYGEVLLSYGRQVI 79


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1519TYPE3IMRPROT2135e-71 Type III secretion system inner membrane R protein ...
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

family signature.
Length = 261

Score = 213 bits (543), Expect = 5e-71
Identities = 231/260 (88%), Positives = 246/260 (94%)

Query: 1 MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA 60
M+QVTSEQWL WL+LYFWPLLRVLALISTAPILSER++PKRVKLGL +MIT IAPSLPA
Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60

Query: 61 NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL 120
ND P+FS ALWLA+QQILIGIALGFTMQFAFAAVRTAGE IGLQMGLSFATFVDP SHL
Sbjct: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120

Query: 121 NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF 180
NMPVLARIMDMLA+LLFLTFNGHLWLISLLVDTFHTLPIG P+NSNAF+AL +AG LIF
Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180

Query: 181 LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC 240
LNGLMLALP+ITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGI LMAALMPLIAPFC
Sbjct: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240

Query: 241 EHLFSEIFNLLADIVSEMPI 260
EHLFSEIFNLLADI+SE+P+
Sbjct: 241 EHLFSEIFNLLADIISELPL 260


95SeKA_A1645SeKA_A1658N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1645861-19.703176O-antigen polymerase
SeKA_A1646756-17.417517rhamnosyl transferase
SeKA_A1647653-15.898458conserved hypothetical protein
SeKA_A1648750-14.739584glycosyl transferase, group 2 family protein
SeKA_A1649749-13.639060putative membrane protein
SeKA_A1650744-11.294830CDP-abequose synthase
SeKA_A1651539-8.596707lipopolysaccharide biosynthesis protein RfbH
SeKA_A1652338-8.563044CDP-glucose 4,6-dehydratase
SeKA_A1653231-7.047913glucose-1-phosphate cytidylyltransferase
SeKA_A1655-123-5.405888dTDP-4-dehydrorhamnose 3,5-epimerase
SeKA_A1656-116-3.015722glucose-1-phosphate thymidylyltransferase
SeKA_A1657-113-1.789592dTDP-4-dehydrorhamnose reductase
SeKA_A1658-113-1.663457dTDP-glucose 4,6-dehydratase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1645FLAGELLIN300.018 Flagellin signature.
		>FLAGELLIN#Flagellin signature.

Length = 507

Score = 30.0 bits (67), Expect = 0.018
Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 255 DSSQASRGSTQGRIDMAINSLNFLSE 280
D+ ++S G+ Q R D AI +L
Sbjct: 432 DAVRSSLGAIQNRFDSAITNLGNTVT 457


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1650NUCEPIMERASE832e-20 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 83.3 bits (206), Expect = 2e-20
Identities = 64/327 (19%), Positives = 130/327 (39%), Gaps = 51/327 (15%)

Query: 7 KILMTGATSFVGTHLLHSLIKEGYSIIALK--RPITEPTIINTLIEWL----------NI 54
K L+TGA F+G H+ L++ G+ ++ + + ++ +E L ++
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 55 QDIEKICQ--SSMNIHAIVHIATDYGRNRTPISEQ-YK-CNVLLPTRLLELMPALKTKFF 110
D E + +S + + + + Y N+ +LE K +
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121

Query: 111 I--STDSFFGKYEK----------HYGYMRSYMASKRHFVELSKIYVEEHPDVCFINLRL 158
+ S+ S +G K H + Y A+K+ ++ Y + + LR
Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHP--VSLYAATKKANELMAHTYSHLY-GLPATGLRF 178

Query: 159 EHVYGERDKAGKIIPYIIKKMKNNEDIDC-TIARQKRDFIYIDDVVSAYLKILKEGFNA- 216
VYG + + K M + ID + KRDF YIDD+ A +++ +A
Sbjct: 179 FTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238

Query: 217 GHYDVE---------------VGTGKSIELKEVFEIIKKETHSSSKINYGAVAMRDDEIM 261
+ VE +G +EL + + ++ +K N + ++ +++
Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM--LPLQPGDVL 296

Query: 262 ESHANTSFLTQ-LGWSAEFSIEKGVKK 287
E+ A+T L + +G++ E +++ GVK
Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKN 323


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1651PERTACTIN330.003 Pertactin signature.
		>PERTACTIN#Pertactin signature.

Length = 922

Score = 32.8 bits (74), Expect = 0.003
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 209 GDIGTVSFYPAHHITMGEGGAVFTRSGELKKIIESFRDWGRDCYCAPGCDNTCGKRFGQQ 268
G +G S + E A+ R GEL+ ++ WGR DN G+RF Q+
Sbjct: 629 GGVGLAS-----TLWYAESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQK 683

Query: 269 LGSLPQGYDHKYTYS----HLG 286
+ G DH + HLG
Sbjct: 684 VAGFELGADHAVAVAGGRWHLG 705


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1652NUCEPIMERASE702e-15 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 69.8 bits (171), Expect = 2e-15
Identities = 62/352 (17%), Positives = 123/352 (34%), Gaps = 48/352 (13%)

Query: 11 RVFVTGHTGFKGSWLSLWLTEMGAIVKGY-ALDAPTVPSLFEIVHL---NDLMESHIGDI 66
+ VTG GF G +S L E G V G L+ SL + + H D+
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61

Query: 67 RDFEKLRNSIAEFKPEIVFHMAAQPLVRLSYEQPIETYSTNVMGTVHLLEAVKQVGNIKA 126
D E + + A E VF + VR S E P +N+ G +++LE + I+
Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN-KIQH 120

Query: 127 VVNITSDKCYDNREWVWGYRENEPMGGYD-------PYSNSKGCAELVASAFRNSFFNPA 179
++ +S V+G P D Y+ +K EL+A + + +
Sbjct: 121 LLYASSSS-------VYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY---- 169

Query: 180 NYEQHGVGLASVRAGNVIGGGDWAK-DRLIPDILRSFENNQQVIIRNPYSI-RPWQHVLE 237
G+ +R V G W + D + ++ + + + N + R + ++ +
Sbjct: 170 -----GLPATGLRFFTVY--GPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDD 222

Query: 238 PLSGYIVVAQRLYTEGAKFSEG-------------WNFGPRDEDAKTVEFIVDKMVTLWG 284
I + + +++ +N G + + + + G
Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIG--NSSPVELMDYIQALEDALG 280

Query: 285 DDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLGRIVKWHKAW 336
+A + P + D +G+ P + + + V W++ +
Sbjct: 281 IEAKKNML-PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1657NUCEPIMERASE422e-06 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 41.7 bits (98), Expect = 2e-06
Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDV-----------HSKEFC---------GD 39
M L+ G G +G+ + + L G+ ++ +D E D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60

Query: 40 FSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPEL---AQLLNATSVEAIAKAANETG 96
++ +G+ + + + + AV + P + L ++ +
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120

Query: 97 AWVVHYSTDYVFPGTGDIPWQETDATS-PLNVYGKTKLAGEK 137
+++ S+ V+ +P+ D+ P+++Y TK A E
Sbjct: 121 --LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL 160


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1658NUCEPIMERASE1762e-54 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 176 bits (447), Expect = 2e-54
Identities = 83/359 (23%), Positives = 141/359 (39%), Gaps = 50/359 (13%)

Query: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLE--SLSDISESNRYNFEH 56
MK L+TG AGFIG V + +++ VV ID L Y +L+ L +++ + F
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPG-FQFHK 58

Query: 57 ADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEVARKYWS 116
D+ D +T +F + V V S+ P A+ ++N+ G +LE R
Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN-- 116

Query: 117 ALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVMLPLFTETTAYAPSSPYSASKASSDH 176
+ S+ VYG +P T+ + P S Y+A+K +++
Sbjct: 117 -------KIQHLLYASSSSVYGLNRK---------MPFSTDDSVDHPVSLYAATKKANEL 160

Query: 177 LVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236
+ + YGLP YGP+ P+ + LEGK + +Y G RD+ Y+
Sbjct: 161 MAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYI 220

Query: 237 EDHA----RALHMVVTEGKA--------------GETYNIGGHNEKNNLDVVFTICDLLD 278
+D A R ++ YNIG + +D + + D L
Sbjct: 221 DDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG 280

Query: 279 EIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337
+A + + +PG + D + +G+ P T + G++ V WY
Sbjct: 281 ---IEA-----KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331


96SeKA_A1688SeKA_A1696N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1688-1154.331056conserved hypothetical protein
SeKA_A1690-1143.990414hypothetical protein
SeKA_A1691-2143.755695multidrug resistance protein MdtA
SeKA_A1692-1132.752922multidrug resistance protein MdtB
SeKA_A1693-1131.957580multidrug resistance protein MdtC
SeKA_A1694-2110.806184inner membrane transport protein YieO
SeKA_A1695-1130.733938signal transduction histidine-protein kinase
SeKA_A1696014-1.855301response regulator
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1688SHAPEPROTEIN514e-09 Bacterial cell shape determinant MreB/Mbl protein s...
		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

signature.
Length = 347

Score = 50.9 bits (122), Expect = 4e-09
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 20/129 (15%)

Query: 132 AMMVHIRHTAHSQ-LPESITQAVIGRPINFQGLGGDDANRQAQGILERAAKRAGFQEVVF 190
M+ H HS + ++ P+ R+A + +A+ AG +EV
Sbjct: 89 KMLQHFIKQVHSNSFMRPSPRVLVCVPVGA-----TQVERRA---IRESAQGAGAREVFL 140

Query: 191 QYEPVAAGLDYEATLREEKRVLVVDIGGGTTDCSMLLMGPQWRQRADRENSLLGHSGCRV 250
EP+AA + + E +VVDIGGGTT+ +++ + ++ S R+
Sbjct: 141 IEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN-----------GVVYSSSVRI 189

Query: 251 GGNDLDIAL 259
GG+ D A+
Sbjct: 190 GGDRFDEAI 198



Score = 35.1 bits (81), Expect = 5e-04
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 377 ALDQPLTRILEQVQLALDSAQEKPDV--------IYLTGGSARSPLIKKALSEQLPGIPV 428
AL +PLT I+ V +AL+ Q P++ + LTGG A + + L E+ GIPV
Sbjct: 259 ALQEPLTGIVSAVMVALE--QCPPELASDISERGMVLTGGGALLRNLDRLLMEET-GIPV 315

Query: 429 AGGDD-FGSVTAGLARWAEVV 448
+D V G + E++
Sbjct: 316 VVAEDPLTCVARGGGKALEMI 336


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1691RTXTOXIND423e-06 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 42.1 bits (99), Expect = 3e-06
Identities = 49/369 (13%), Positives = 105/369 (28%), Gaps = 88/369 (23%)

Query: 4 SNTFRWAIAIGVVVAAAAF-WFWHSRSESPTAAPGV--------AAQAPHTAAADRRGMR 54
S R + AF + E A G + + ++
Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113

Query: 55 DG-------PLA---PVQAATATTQAVPRYLSGLGTVTAANTVTVRSRVDG--QLIALHF 102
+G L + A T + L T ++ ++ +L
Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173

Query: 103 QEGQQVNAGDLLAQI------------DPSQFKVALAQAQGQLAKDNATLANARR----- 145
Q V+ ++L Q ++ L + + + A +
Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233

Query: 146 --DLARYQQLAKTNLVSRQELDAQQALVNETQGTIKADEANVA----------------- 186
L + L +++ + Q+ E ++ ++ +
Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293

Query: 187 --------------------------SAQLQLDWSRITAPVSGRV-GLKQVDVGNQISSS 219
+ + S I APVS +V LK G ++++
Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353

Query: 220 DTAGIVVITQTHPIDLIFTLPESDIATVVQAQKAGKALVVEAWDRTNSHKL-SEGVLLSL 278
+T +V++ + +++ + DI + Q A + VEA+ T L + ++L
Sbjct: 354 ETL-MVIVPEDDTLEVTALVQNKDIGFINVGQNA--IIKVEAFPYTRYGYLVGKVKNINL 410

Query: 279 DNQIDPTTG 287
D D G
Sbjct: 411 DAIEDQRLG 419


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1692ACRIFLAVINRP8910.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 891 bits (2303), Expect = 0.0
Identities = 293/1036 (28%), Positives = 504/1036 (48%), Gaps = 29/1036 (2%)

Query: 13 SRLFILRPVATTLLMAAILLAGIIGYRFLPVAALPEVDYPTIQVVTLYPGASPDVMTSAV 72
+ FI RP+ +L +++AG + LPVA P + P + V YPGA + V
Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61

Query: 73 TAPLERQFGQMSGLKQMSSQS-SGGASVVTLQFQLTLPLDVAEQEVQAAINAATNLLPSD 131
T +E+ + L MSS S S G+ +TL FQ D+A+ +VQ + AT LLP +
Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121

Query: 132 LPNPPIYSKVNPADPPIMTLAVTSNAMPMTQVE--DMVETRVAQKISQVSGVGLVTLAGG 189
+ I S + +M S+ TQ + D V + V +S+++GVG V L G
Sbjct: 122 VQQQGI-SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 190 QRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGP------ERAVTLSANDQ 243
Q A+R+ L+A + LT V + N A G L G + ++ A +
Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239

Query: 244 MQSADEYRKLII-AYQNGAPVRLGDVATVEQGAENSWLGAWANQAPAIVMNVQRQPGANI 302
++ +E+ K+ + +G+ VRL DVA VE G EN + A N PA + ++ GAN
Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299

Query: 303 IATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDTQFELMLAIALVVMIIYLFL 362
+ TA +I+ L +L P+ +KV D T ++ S+ + L AI LV +++YLFL
Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359

Query: 363 RNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRY 422
+N+ AT+IP +AVP+ L+GTFA++ +SIN LT+ + +A G +VDDAIVV+EN+ R
Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 423 I-EKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAIL 481
+ E P A K +I ++ + L AV IP+ F G G ++R+F++T+ A+
Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479

Query: 482 ISAVVSLTLTPMMCARML---SQQSLRKQNRFSRACERMFDRVIASYGRGLAKVLNHPWL 538
+S +V+L LTP +CA +L S + + F FD + Y + K+L
Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539

Query: 539 TLSVAFATLLLSVMLWIVIPKGFFPVQDNGIIQGTLQAPQSSSYASMAQRQRQVAERILQ 598
L + + V+L++ +P F P +D G+ +Q P ++ + QV + L+
Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599

Query: 599 DPA--VQSLTTFVGVDGANPTLNSARLQINLKPLDARDDR---VQQVISRLQTAVATIPG 653
+ V+S+ T G + N+ ++LKP + R+ + VI R + + I
Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659

Query: 654 VALYLQPTQDLTIDTQVSRTQYQFTLQ---ATTLDALSHWVPKL-QNALQSLPQLSEVSS 709
++ P I + T + F L DAL+ +L A Q L V
Sbjct: 660 G--FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717

Query: 710 DWQDRGLAAWVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTA 769
+ + + VD++ A LG+S++D++ + A G ++ + ++ ++ +
Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777

Query: 770 STPGLAALETIRLTSRDGGTVPLSAIARIEQRFAPLSINHLDQFPVTTFSFNVPEGYSLG 829
++ + + S +G VP SA + + + P G S G
Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837

Query: 830 DAVQAILDTEKTLALPADITTQFQGSTLAFQAALGSTVWLIVAAVVAMYIVLGVLYESFI 889
DA+ + + LPA I + G + + + L+ + V +++ L LYES+
Sbjct: 838 DAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895

Query: 890 HPITILSTLPTAGVGALLALIIAGSELDIIAIIGIILLIGIVKKNAIMMIDFALAAEREQ 949
P++++ +P VG LLA + + D+ ++G++ IG+ KNAI++++FA ++
Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955

Query: 950 GMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIAMVGGLLVSQV 1009
G +A A +R RPILMT+LA +LG LPL +S G G+ + +GI ++GG++ + +
Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015

Query: 1010 LTLFTTPVIYLLFDRL 1025
L +F PV +++ R
Sbjct: 1016 LAIFFVPVFFVVIRRC 1031


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1693ACRIFLAVINRP8790.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 879 bits (2273), Expect = 0.0
Identities = 283/1035 (27%), Positives = 504/1035 (48%), Gaps = 36/1035 (3%)

Query: 6 LFIYRPVATILIAAAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVAT 65
FI RP+ ++A + + G L LPVA P + P + VSA+ PGA +T+ +V
Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63

Query: 66 PLERSLGRIAGVNEMTSSS-SLGSTRIILEFNFDRDINGAARDVQAAINAAQSLLPGGMP 124
+E+++ I + M+S+S S GS I L F D + A VQ + A LLP +
Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123

Query: 125 SRPTYRKANPSDAPIMILTLTSES--WSQGKLYDFASTQLAQTIAQIDGVGDVDVGGSSL 182
+ S + +M+ S++ +Q + D+ ++ + T+++++GVGDV + G+
Sbjct: 124 -QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182

Query: 183 PAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSV------HRWQIQTNDELK 236
A+R+ L+ L ++ +V + N + G + + I K
Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241

Query: 237 TAAEYQPLIIHYN-NGAAVRLGDVASVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQ 295
E+ + + N +G+ VRL DVA V ++ N KPA L I+ AN +
Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301

Query: 296 TVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEVEETLAISVALVILVVFLFLRS 355
T I+AKL EL+ P + + D +P ++ S+ EV +TL ++ LV LV++LFL++
Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361

Query: 356 GRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHL- 414
RATLIP +AVPV L+GTFA + G+S+N L++ + +A G +VDDAIVV+EN+ R +
Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421

Query: 415 EAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGIS 474
E + P +A + ++ ++ +++ L AVF+P+ GG G + R+F++T+ A+ +S
Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481

Query: 475 LVVSLTLTPMMCGWMLKSSKPRTQPRKRGVG----RLLVALQQGYGTSLKWVLNHTRLVG 530
++V+L LTP +C +LK K G Y S+ +L T
Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541

Query: 531 VVFLGTIALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQ----AMRGKLQDFMKII 586
+++ +A + L++ +P +F PE+D GV + IQ + + + ++K
Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601

Query: 587 RD-DPAVNNVTGFT-GGSRVNSGMMFITLKPRGER---KETAQQVIDRLRVKLAKEPGAR 641
+ +V V GF+ G N+GM F++LKP ER + +A+ VI R +++L K
Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661

Query: 642 LFLMAVQDIRVGGRQANASYQYTLLSDSLAALREWEPKIRKALSAL-----PQLADVNSD 696
+ + I G ++ L D + + R L + L V +
Sbjct: 662 VIPFNMPAIVELGTATGFDFE---LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718

Query: 697 QQDNGAEMNLIYDRDTMSRLGIDVQAANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRY 756
++ A+ L D++ LG+ + N ++ A G ++ K+ ++ D ++
Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778

Query: 757 SQDISALEKMFVINSDGKAIPLSYFAQWRPANAPLSVNHQGLSAASTIAFNLPTGTSLSQ 816
++K++V +++G+ +P S F + + I GTS
Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838

Query: 817 ATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVH 876
A + ++L P + ++G + + + N L+ + V++ L LYES+
Sbjct: 839 AMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896

Query: 877 PLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGG 936
P++++ +P VG LLA LFN + ++G++ IG+ KNAI++V+FA + G
Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956

Query: 937 LTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLL 996
+A A +R RPI+MT+LA + G LPL +S G GS + +GI ++GG+V + LL
Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016

Query: 997 TLYTTPVVYLFFDRL 1011
++ PV ++ R
Sbjct: 1017 AIFFVPVFFVVIRRC 1031


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1694TCRTETB1243e-33 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 124 bits (312), Expect = 3e-33
Identities = 95/450 (21%), Positives = 198/450 (44%), Gaps = 25/450 (5%)

Query: 20 FMQSLDTTIVNTALPSMAKSLGESPLHMHMVVVSYVLTVAVMLPASGWLADKIGVRNIFF 79
F L+ ++N +LP +A + P + V +++LT ++ G L+D++G++ +
Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83

Query: 80 AAIVLFTLGSLFCALSGT-LNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTF 138
I++ GS+ + + + L++AR +QG G A + + V + +P+ A
Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143

Query: 139 VTLPGQIGPLLGPALGGVLVEYASWHWIFLINIP-VGIVGAMATFMLMPNYTIETRRFDL 197
+ +G +GPA+GG++ Y HW +L+ IP + I+ L+ FD+
Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201

Query: 198 PGFLLLAIGMAVLTLALDGSKSMGISPWTLAGLAAGGAAAILLYLFHAKKNSGALFSLRL 257
G +L+++G+ L + L + L+++ H +K + L
Sbjct: 202 KGIILMSVGIVFFMLFTTSYSISFLIVSVL---------SFLIFVKHIRKVTDPFVDPGL 252

Query: 258 FRTPTFSLGLLGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG-LMMIPMVLGSMGMKRI 316
+ F +G+L M P ++ S G +++ P + + I
Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312

Query: 317 VVQIVNRFGYRRVLVATTLGLALVSLLFMSVALL----GWYYLLPLVLLLQGMVNSARFS 372
+V+R G VL +G+ +S+ F++ + L W+ + +V +L G+ S +
Sbjct: 313 GGILVDRRGPLYVL---NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL--SFTKT 367

Query: 373 SMNTLTLKDLPDTLASSGNSLLSMIMQLSMSIGVTIAGMLL--GMFGQQHIGIDSSATHH 430
++T+ L A +G SLL+ LS G+ I G LL + Q+ + ++ + +
Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTY 427

Query: 431 VFMYTWLCMAVIIALPAIIFARVPNDTQQN 460
++ L + II + ++ V +Q++
Sbjct: 428 LYSNLLLLFSGIIVISWLVTLNVYKHSQRD 457


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1695BCTERIALGSPF310.010 Bacterial general secretion pathway protein F signa...
		>BCTERIALGSPF#Bacterial general secretion pathway protein F

signature.
Length = 408

Score = 31.0 bits (70), Expect = 0.010
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 14/66 (21%)

Query: 187 RGLLAPVKRLVEGTHRLAAGDFTTRVTPTSADEL-----------GKLAQDFNQLASTLE 235
L+A V+ V H LA + P S + L G L N+LA E
Sbjct: 104 SQLMAAVRSKVMEGHSLAD---AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTE 160

Query: 236 KNQQMR 241
+ QQMR
Sbjct: 161 QRQQMR 166


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1696HTHFIS758e-18 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 75.3 bits (185), Expect = 8e-18
Identities = 27/140 (19%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGL 70
IL+ +D+ + +L L A Y + ++ + ++ DL++ D+++P +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

Query: 71 TLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL-RRC 128
L I+ D+P+++++A+ + + E GA DY+ KP+ E++ + L
Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

Query: 129 KPQRELQQQDAESPLMIDES 148
+ +L+ + ++ S
Sbjct: 124 RRPSKLEDDSQDGMPLVGRS 143


97SeKA_A1841SeKA_A1849N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1841-112-2.160570outer membrane protein C
SeKA_A1843-111-3.459778Hpt domain protein
SeKA_A1845-211-3.531062sensor kinase protein RcsC
SeKA_A1846-113-3.698289DNA gyrase, A subunit
SeKA_A1847-113-5.589517mandelate racemase
SeKA_A1848-114-4.414693putative permease
SeKA_A1849-115-2.872198putative GntR family regulatory protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1841ECOLIPORIN5390.0 E.coli/Salmonella-type porin signature.
		>ECOLIPORIN#E.coli/Salmonella-type porin signature.

Length = 383

Score = 539 bits (1391), Expect = 0.0
Identities = 261/389 (67%), Positives = 298/389 (76%), Gaps = 17/389 (4%)

Query: 1 MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIG 60
MK KVL+L++PALL AGAA+AAEIYNKDGNKLDL+GKVDGLHYFSDD DGDQTYMR+G
Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSKDGDQTYMRVG 60

Query: 61 FKGETQVNDQLTGYGQWEYQIQGNQTEG-SNDSWTRVAFAGLKFADAGSFDYGRNYGVTY 119
FKGETQ+NDQLTGYGQWEY +Q N TEG +SWTR+AFAGLKF D GSFDYGRNYGV Y
Sbjct: 61 FKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYGRNYGVLY 120

Query: 120 DVTSWTDVLPEFGGDTYG-ADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKNGSVS 178
DV WTD+LPEFGGD+Y ADN+M R NG ATYRNTDFFGLVDGL+FALQYQGKN S S
Sbjct: 121 DVEGWTDMLPEFGGDSYTYADNYMTGRANGVATYRNTDFFGLVDGLNFALQYQGKNESQS 180

Query: 179 GEN--------TNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKRTADQNNTANDRL 230
++ NG + NGDG+G S TY IG GFS G A TTS RT +Q N
Sbjct: 181 ADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGAAYTTSDRTNEQVNAGG--T 238

Query: 231 YGNGDRATVYTGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVV 290
GD+A +T GLKYDANNIYLA YS+T N T +G ++ G ANK QNFEV
Sbjct: 239 IAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPYGKTDK---GYDGGVANKTQNFEVT 295

Query: 291 AQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKI 350
AQYQFDFGLRP+V++L SKGKD++ + D+D+VKY DVGATYYFNKN STYVDYKI
Sbjct: 296 AQYQFDFGLRPAVSFLMSKGKDLTYN-NVNGDDKDLVKYADVGATYYFNKNFSTYVDYKI 354

Query: 351 NLLDKND-FTRDAGINTDDIVALGLVYQF 378
NLLD +D F +DAGI+TDDIVALG+VYQF
Sbjct: 355 NLLDDDDPFYKDAGISTDDIVALGMVYQF 383


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1845HTHFIS801e-17 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 79.9 bits (197), Expect = 1e-17
Identities = 29/104 (27%), Positives = 47/104 (45%)

Query: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886
ILV DD R +L L GY + ++ ++ D+V++DV MP+ + + L
Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

Query: 887 TQRIRQLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLD 930
RI++ LPV+ ++A + E G L KP L
Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1848TCRTETB310.012 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 30.6 bits (69), Expect = 0.012
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 12/179 (6%)

Query: 25 ILYFFNYMDRVNIGFAALRMNESLGITPEDFANISSIFFISYLIFQIPSSIGLQKLGARK 84
IL FF+ ++ + + + + P +++ F +++ I +LG ++
Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80

Query: 85 W--ISSIIIGWGAVTGLIFFAKDTQHIL-LARIFLGVFEAGFFPGMVYYLACWFPARERG 141
II +G+V G F +L +AR G A F ++ +A + P RG
Sbjct: 81 LLLFGIIINCFGSVIG--FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138

Query: 142 KVNSFFMLSIAVASVLAAPMSGWIIEHLNTPDYEGWRWLFAIEGIPTVFLGILTFYLLP 200
K +A+ + + G I ++ W +L I I T+ LL
Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYI------HWSYLLLIPMI-TIITVPFLMKLLK 190


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1849NUCEPIMERASE280.043 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 28.2 bits (63), Expect = 0.043
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 196 AERDTQAYLKLDHDFHYVFVKYADNKYISQAHLLISARLLAIRYRLDFTAEYITSSNRGH 255
A+R+ L F VF+ + A+RY L+ Y S+ G
Sbjct: 62 ADREGMTDLFASGHFERVFISPH------RL---------AVRYSLENPHAYADSNLTGF 106

Query: 256 ATILDMLKNNNVEGV 270
IL+ ++N ++ +
Sbjct: 107 LNILEGCRHNKIQHL 121


98SeKA_A1890SeKA_A1896N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A18901305.115767protein ElaA
SeKA_A18911274.082769ribonuclease Z
SeKA_A18921284.396522CheW protein
SeKA_A18932284.652917von Willebrand factor, type A
SeKA_A18943315.316943hypothetical protein
SeKA_A18963315.436468ShdA
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1890AUTOINDCRSYN300.002 Autoinducer synthesis protein signature.
		>AUTOINDCRSYN#Autoinducer synthesis protein signature.

Length = 216

Score = 30.2 bits (68), Expect = 0.002
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 1 MIDWQDLHHSELTVPQLYALLKLRCAVFV--------VEQRCPYLDVDGDDLVGDNRHIL 52
M++ D++H+ L+ + L LR F + D + + ++
Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNN----NTTYLF 56

Query: 53 GWHQDELVAYARIL 66
G + ++ R +
Sbjct: 57 GIKDNTVICSLRFI 70


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1891BINARYTOXINB310.008 Binary toxin B family signature.
		>BINARYTOXINB#Binary toxin B family signature.

Length = 764

Score = 30.8 bits (69), Expect = 0.008
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 91 VYGPQGVREFIATTLRLS--GSWTDFPMQIEEISAGDILDDG-----LRKVTAFRLEHPL 143
VYG F +R+ +W++ QI+E +A I + R++ A PL
Sbjct: 484 VYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPL 543

Query: 144 E 144
E
Sbjct: 544 E 544


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1892HTHFIS491e-08 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 49.1 bits (117), Expect = 1e-08
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 16/135 (11%)

Query: 185 PGAVAIVAEDSKVARAMLEKGLNAMGIPHQMHVTGKDAWERIQQLAQEAEAEGKPISEKI 244
GA +VA+D R +L + L+ G ++ W I +
Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-------------AGDG 48

Query: 245 ALVLTDLEMPEMDGFTLTRKIKTDERLKKIPVVIHSSLSGSANEDHIRKVQADGYVAK-F 303
LV+TD+ MP+ + F L +IK + +PV++ S+ + + A Y+ K F
Sbjct: 49 DLVVTDVVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106

Query: 304 EINELSSVIQEVLER 318
++ EL +I L
Sbjct: 107 DLTELIGIIGRALAE 121


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1893IGASERPTASE330.004 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 33.1 bits (75), Expect = 0.004
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 8/178 (4%)

Query: 22 EPSDPQGNNPAELKQEQAIQKENSAQAGDDTVQKRQAEAAQQAAKKAAEYKAKAEAKALA 81
PS+ KQE ++N A + T Q R+ ++ KA +
Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091

Query: 82 DAKAGSLATAEAPQHEMRTRASASKAFAAQGGNVMGTA---RYEHYDENPIKQVSQAPLA 138
+ + T E E +A + V + + P + ++
Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151

Query: 139 TFSLD---VDTGSYANVRRFLNQGQLPPPEAVRVEEMLNYFPAPQ--PVADKQDNTKP 191
T ++ T + A+ + + + V +N + P T+P
Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1896PRTACTNFAMLY771e-15 Pertactin virulence factor family signature.
		>PRTACTNFAMLY#Pertactin virulence factor family signature.

Length = 910

Score = 76.6 bits (188), Expect = 1e-15
Identities = 103/488 (21%), Positives = 164/488 (33%), Gaps = 79/488 (16%)

Query: 2389 DSSPTDKLIVTGDTAGSTTLHITNVNGLGAQTVNGIEVIEVGGQSDGDFRLYK--GHVDI 2446
D +DKL+V D +G L + N +G + N + +++ S F L G VDI
Sbjct: 491 DLGLSDKLVVMQDASGQHRLWVRN-SGSEPASANTLLLVQTPLGSAATFTLANKDGKVDI 549

Query: 2447 NAWTYTLKQDGGDWYLRSESDDVPDDGGEVTPPDDGGEVTPPDDGGEVTPPDDGGEVTPP 2506
+ Y L +G + + P P + P P G E++
Sbjct: 550 GTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAA 609

Query: 2507 DDGGEVTPPDDDGEVTPPDDGGDITPPDDGGDITPPDGGDVTPVAPQYRADIGVYLGNQW 2566
+ + G V + + A
Sbjct: 610 ANAAV-------------------------------NTGGVGLASTLWYA---------- 628

Query: 2567 MARNLQMQTLYDREGSQYRSAD-GSIWMRFKAGKAESQAVNGNV--DIDSDYSQFQLGGD 2623
+ L R G + D G W R G A+ Q ++ D + F+LG D
Sbjct: 629 -----ESNALSKRLGELRLNPDAGGAWGR---GFAQRQQLDNRAGRRFDQKVAGFELGAD 680

Query: 2624 ILTWSDGAQSVTVGLMGSYINASTDSTGNRGADGSQFSANGSVDGYNLGLYATWFADAQS 2683
+ +G + Y TG+ G G D ++G YAT+ AD+
Sbjct: 681 -HAVAVAGGRWHLGGLAGYTRGDRGFTGDGG---------GHTDSVHVGGYATYIADS-- 728

Query: 2684 HRGAYIDSWYQYGAYNNSVDNDGLSASR----YDSAAHAVSLETGYRYDIALSNRNTVSL 2739
G Y+D+ + N G Y + SLE G R+ A + L
Sbjct: 729 --GFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHA----DGWFL 782

Query: 2740 TPQAQVTWQRYSADTVIDDGGTRISGQNDDSWTTRLGMRVDGKLYKESGRI-QPFMEVNW 2798
PQA++ R G R+ + S RLG+ V ++ GR QP+++ +
Sbjct: 783 EPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASV 842

Query: 2799 LHASDNASATF-GDTKVSQDLPNDRVEVKVGIQANVSERLSVYAQAAGQKGKNDYGDASF 2857
L D A +L R E+ +G+ A + S+YA KG +F
Sbjct: 843 LQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWTF 902

Query: 2858 SLNMRYNW 2865
RY+W
Sbjct: 903 HAGYRYSW 910



Score = 33.1 bits (75), Expect = 0.019
Identities = 76/359 (21%), Positives = 120/359 (33%), Gaps = 38/359 (10%)

Query: 1025 ANSGWNGQSLTKTGAGTLILNAENTYTGGTLISDGTLVASNVEALGTGDITDNAVLELNT 1084
A++ WN QS+ KTG ++ + + GG + GT + + G + +N EL
Sbjct: 32 AHADWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQ-AQGILLENPAAELQF 90

Query: 1085 GGDFDNAISGSGQVVKSGDETLTLSGSNTYTGGTIISGGTLVATNVEALGTGDVTDNATL 1144
+G V SG L+ G + G + G LVA + GD D+ +
Sbjct: 91 ---------RNGSVTSSG--QLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGI 139

Query: 1145 ELNTGGDF------DNAIGGTGSVVKSGDKTLTLSGANSYTGGTTISGGTLVASNVEALG 1198
L G+ D+ + G G V GAN + I G L +++L
Sbjct: 140 ALYVAGEQAQASIADSTLQGAGGVQ-------IERGANVTVQRSAIVDGGLHIGALQSLQ 192

Query: 1199 SGDVTDNATLELNTGGDFANNIGGTGSVVKSGDKTLTLSGTNSYTG---GTTISGGTLVA 1255
D+ + + +T G +V G LTL G + G G G +V
Sbjct: 193 PEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVH 252

Query: 1256 NNVEALGTGDVTNNATLELNTGGDFDNAISGSGQVVKSGDKTLTLSGANSYSGATTISGG 1315
+ GD + GG A+ G G Y + S
Sbjct: 253 LQRATIRRGDAPAGGAVP---GG----AVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSV 305

Query: 1316 TLIATHVNALGTGA---IDNRASLLLDASGQFTVTDLTTESGGNTEIGAGSTLQATTLT 1371
L + V A GA + A + + E+GG + + TL
Sbjct: 306 ELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQ 364


99SeKA_A1946SeKA_A1954N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1946-190.594108diaminopimelate decarboxylase
SeKA_A1947-1111.960404putative regulatory protein
SeKA_A19480152.211958amidophosphoribosyltransferase
SeKA_A1949-1152.832186CvpA protein
SeKA_A1950-1163.629926DedD protein
SeKA_A1951-1153.359333tetrahydrofolate synthase/dihydrofolate
SeKA_A1952-1142.585229acetyl-CoA carboxylase, carboxyl transferase,
SeKA_A1953-1143.457486membrane protein, DedA family
SeKA_A1954-2153.739618tRNA pseudouridine synthase A
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1946ALARACEMASE320.006 Alanine racemase signature.
		>ALARACEMASE#Alanine racemase signature.

Length = 356

Score = 31.7 bits (72), Expect = 0.006
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 20/133 (15%)

Query: 87 VLKAIRDAGICAEANSQYEVRKCLEIGFRGDQIVFNGVVKKPADLEYAIANDLYLINVDS 146
+ AI A N + E E G++G ++ G DLE + L
Sbjct: 46 IWSAIGATDGFALLNLE-EAITLRERGWKGPILMLEGFFH-AQDLEIYDQHRLTT----C 99

Query: 147 LYELEHIDAIS-RKLKKVANVCVRVEPNVPSATHAELVTAFHAKSGLDLEQAEETCRRIL 205
++ + A+ +LK ++ ++V + + + G ++ +++
Sbjct: 100 VHSNWQLKALQNARLKAPLDIYLKVN------------SGMN-RLGFQPDRVLTVWQQLR 146

Query: 206 AMPYVHLRGLHMH 218
AM V L H
Sbjct: 147 AMANVGEMTLMSH 159


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1947HTHFIS347e-117 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 347 bits (893), Expect = e-117
Identities = 121/371 (32%), Positives = 185/371 (49%), Gaps = 24/371 (6%)

Query: 122 NMSGVRRLQEQVVELNQLLYADHHE---KHHAIITENPEMLSNIAKAKRLAASNIPVTIV 178
+++ + + + + + + + ++ + M RL +++ + I
Sbjct: 107 DLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166

Query: 179 GETGTGKELFSRLIHQCSKRANKPFIALNCGALPPTLIESTLFGTVRGAYTGAENS-QGY 237
GE+GTGKEL +R +H KR N PF+A+N A+P LIES LFG +GA+TGA+ G
Sbjct: 167 GESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGR 226

Query: 238 LELANGGTLFLDELNAMPIEMQSKLLRFLQDKTFWRLGGQQQLHSDVRIVAAMNEAPVKL 297
E A GGTLFLDE+ MP++ Q++LLR LQ + +GG+ + SDVRIVAA N+ +
Sbjct: 227 FEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286

Query: 298 IQQERLRADLFYRLSVGMLTLPPLRTRPEDIPLLANYFIDKYRNDVPQDIHGLSETARAD 357
I Q R DL+YRL+V L LPPLR R EDIP L +F+ + + D+ + A
Sbjct: 287 INQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALEL 345

Query: 358 LLNHAWPGNVRMLENAIVRSMIMQEKDGLLKHIIF-------------------EQDELN 398
+ H WPGNVR LEN + R + +D + + II ++
Sbjct: 346 MKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSIS 405

Query: 399 LGVPETAPENPLPSSPDPQYEGSLEVRVANYERHLIETALDTHQGNIAAAARSLNVSRTT 458
V E + G + +A E LI AL +GN AA L ++R T
Sbjct: 406 QAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNT 465

Query: 459 LQYKVQKYAIR 469
L+ K+++ +
Sbjct: 466 LRKKIRELGVS 476


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1948ANTHRAXTOXNA340.002 Anthrax toxin LF subunit signature.
		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.

Length = 800

Score = 33.6 bits (76), Expect = 0.002
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 469 KDVDQQYLDFLDSLRND-DAKAVLFQNEM-ENLEMHN 503
K +D ++L+ + SL +D D+ +LF + E LE++N
Sbjct: 186 KSLDPEFLNLIKSLSDDSDSSDLLFSQKFKEKLELNN 222


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1950PERTACTIN300.009 Pertactin signature.
		>PERTACTIN#Pertactin signature.

Length = 922

Score = 29.7 bits (66), Expect = 0.009
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 99 PIPAETPKPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGALKNA 158
P P P+P P P+P PQ P P QP A P G+ L A NA
Sbjct: 569 PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRE----LSAAANA 624



Score = 28.5 bits (63), Expect = 0.026
Identities = 16/49 (32%), Positives = 17/49 (34%)

Query: 106 KPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGA 154
K P KP PQP PQ P P P P +A Q A
Sbjct: 566 KAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPA 614


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1954FbpA_PF05833290.026 Fibronectin-binding protein
		>FbpA_PF05833#Fibronectin-binding protein

Length = 577

Score = 28.7 bits (64), Expect = 0.026
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 204 VRNIVGS-LLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDYPDRFDLPKPP 262
+NI GS ++ + PES + E AA LAA +K++ V VDY + ++ KP
Sbjct: 496 TKNIPGSHVIVKNIMDIPESTLLE--AAN---LAAYYSKSQNSSNVPVDYTEVKNVKKPN 550

Query: 263 MGP 265

Sbjct: 551 GAK 553


100SeKA_A1976SeKA_A1984N        Y        YPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A1976-216-1.395509lipoprotein, VacJ family
SeKA_A1977-216-1.927455inner membrane protein YfdC
SeKA_A1979-117-2.016533*protease 7
SeKA_A1980-118-1.643571transcriptional regulator, Fis family
SeKA_A1981-215-1.078344phosphoglycerate transport system sensor protein
SeKA_A1983-115-2.110414phosphoglycerate transport: protein for signal
SeKA_A1984215-2.198687phosphoglycerate transport: transporter
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1976VACJLIPOPROT398e-144 VacJ lipoprotein signature.
		>VACJLIPOPROT#VacJ lipoprotein signature.

Length = 251

Score = 398 bits (1024), Expect = e-144
Identities = 237/251 (94%), Positives = 248/251 (98%)

Query: 1 MKLRLSALALGTTLLVGCASSGTEQQGRSDPFEGFNRTMYNFNFNVLDPYVVRPVAVAWR 60
MKLRLSALALGTTLLVGCASSGT+QQGRSDP EGFNRTMYNFNFNVLDPY+VRPVAVAWR
Sbjct: 1 MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWR 60

Query: 61 DYVPQPARNGLSNFTGNLEEPAIMVNYFLQGDPYQGMVHFTRFFLNTLLGMGGFIDVAGM 120
DYVPQPARNGLSNFTGNLEEPA+MVNYFLQGDPYQGMVHFTRFFLNT+LGMGGFIDVAGM
Sbjct: 61 DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGM 120

Query: 121 ANPKLQRVEPHRFGSTLGHYGVGYGPYMQLPFYGSFTLREDGGDMADTLYPVLSWLTWPM 180
ANPKLQR EPHRFGSTLGHYGVGYGPY+QLPFYGSFTLR+DGGDMAD LYPVLSWLTWPM
Sbjct: 121 ANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPVLSWLTWPM 180

Query: 181 SIGKWTIEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGKLKPQENPNAQA 240
S+GKWT+EGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGG+LKPQENPNAQA
Sbjct: 181 SVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKPQENPNAQA 240

Query: 241 IQDELKEIDSE 251
IQD+LK+IDSE
Sbjct: 241 IQDDLKDIDSE 251


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1977PF06580290.030 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 28.7 bits (64), Expect = 0.030
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 199 WIIATMVWMFPAAGGAKIVVIILMTWLIALGDTTHIVVGSVEILYLV-FNGTLPWSDFLW 257
I W+ G I+ ++ +I + V + I L+ F T P + F
Sbjct: 61 SFIKRQGWLKLNMG-QIILRVLPACVVIGM----VWFVANTSIWRLLAFINTKPVA-FTL 114

Query: 258 PFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEEARLRGERLERERKKAE 310
P AL ++ N+ TF+++L+ K ++A + ++ ++A+
Sbjct: 115 PLAL-SIIFNVVVVTFMWSLLYFGWHFF----KNYKQAEIDQWKMASMAQEAQ 162


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1979OMPTIN476e-173 Omptin serine protease signature.
		>OMPTIN#Omptin serine protease signature.

Length = 317

Score = 476 bits (1226), Expect = e-173
Identities = 149/320 (46%), Positives = 213/320 (66%), Gaps = 11/320 (3%)

Query: 1 MKKHAIAVMMIAVFSESVYAESTLFIPDVSPDSVTTSLSVGVLNGKSRELVYD-TDTGRK 59
M+ + +++ + S +A + +PD++ +S+G L+GK++E VY + GRK
Sbjct: 1 MRAKLLGIVLTTPIAISSFASTET--LSFTPDNINADISLGTLSGKTKERVYLAEEGGRK 58

Query: 60 LSQLDWKIKNVATLQGDLSWEPYSFMTLDARGWTSLASGSGHMVDHDWMSSEQPG-WTDR 118
+SQLDWK N A ++G ++W+ +++ A GWT+L S G+MVD DWM S PG WTD
Sbjct: 59 VSQLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDE 118

Query: 119 SIHPDTSVNYANEYDLNVKGWLLQGDNYKAGVTAGYQETRFSWTARGGSYIYDNGR---- 174
S HPDT +NYANE+DLN+KGWLL NY+ G+ AGYQE+R+S+TARGGSYIY +
Sbjct: 119 SRHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRD 178

Query: 175 YIGNFPHGVRGIGYSQRFEMPYIGLAGDYRINDFECNVLFKYSDWVNAHDNDEHY--MRK 232
IG+FP+G R IGY QRF+MPYIGL G YR DFE FKYS WV + DNDEHY ++
Sbjct: 179 DIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPGKR 238

Query: 233 LTFREKTENSRYYGASIDAGYYITSNAKIFAEFAYSKYEEGKGGTQIIDKTSGDTAYFGG 292
+T+R K ++ YY +++AGYY+T NAK++ E A+++ KG T + D + +T+ +
Sbjct: 239 ITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNN-NTSDYSK 297

Query: 293 DAAGIANNNYTVTAGLQYRF 312
+ AGI N N+ TAGL+Y F
Sbjct: 298 NGAGIENYNFITTAGLKYTF 317


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1980HTHFIS2488e-80 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 248 bits (634), Expect = 8e-80
Identities = 121/474 (25%), Positives = 193/474 (40%), Gaps = 73/474 (15%)

Query: 7 SILLIDDDVDVLDAYTQMLEQAGYRVRGFTHPFEAKEWVKADWEGIVLSDVCMPGCSGID 66
+IL+ DDD + Q L +AGY VR ++ W+ A +V++DV MP + D
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 67 LMTLFHQDDDQLPILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLILIEDALRQRRS 126
L+ + LP+L+++ A+ A +KGA+D+L KP D +L+ +I AL + +
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 127 VIARRQYCQQTLQVELIGRSEWMNQFRQRLQQLAETDIAVWFYGEHGTGRMTGARYLHQL 186
++ + Q L+GRS M + + L +L +TD+ + GE GTG+ AR LH
Sbjct: 125 RPSKLEDDSQDGM-PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183

Query: 187 GRNAKGPFVRYELT--PENAGQLETF-----------------IDQAQGGTLVLSHPEYL 227
G+ GPFV + P + + E F +QA+GGTL L +
Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243

Query: 228 TREQQHHLAR-LQSLEHRP----------FRLVGVGSASLVEQAAANQIAAELYYCFAMT 276
+ Q L R LQ E+ R+V + L + +LYY +
Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303

Query: 277 QIACQSLSQRPDDIEPLFRHYLRKACLRLNHPVPEIAGELLKGIMRRAWPSNVRELANAA 336
+ L R +DI L RH++++A + V E L+ + WP NVREL N
Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELENLV 362

Query: 337 ELFAV-----------------------------------GVLPLAETVNPQLL------ 355
+ E Q
Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422

Query: 356 LQESSPLDRRVEEYERQIITEALNIHQGRINEVAEYLQIPRKKLYLRMKKYGLS 409
L S DR + E E +I AL +G + A+ L + R L ++++ G+S
Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A1984TCRTETA348e-04 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 34.4 bits (79), Expect = 8e-04
Identities = 72/429 (16%), Positives = 140/429 (32%), Gaps = 45/429 (10%)

Query: 28 IQALLSVFLGYLAYYIVRNNFTLSTPYLKEQLDLSATQI---GLLSSCMLIAYGISKGVM 84
I L +V L + ++ P L L S G+L + + V+
Sbjct: 8 IVILSTVALDAVGIGLI----MPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL 63

Query: 85 SSLADKASPKVFMACGLVLCAIVNVGLGFSSAFWIFAALVVFNGLFQGMGVGPSFITIAN 144
+L+D+ + + L A+ + + W+ + G+ G IA+
Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIAD 122

Query: 145 WFPRRERGRVGAFWNISHNVGGGIVA-PIVGAAFAILGSEHWQSASYIVPACVAVIFALI 203
ER R F +S G G+VA P++G A + A + + L
Sbjct: 123 ITDGDERAR--HFGFMSACFGFGMVAGPVLGGLMGGFSPH----APFFAAAALNGLNFLT 176

Query: 204 VLVLGKGSPREEGLPSLEQMMPEEKVVLKTKNTAKAPENMSAWQIFCTYVLRNKNAWYIS 263
L +PE + + P A ++ +
Sbjct: 177 GCFL----------------LPE------SHKGERRPLRREALNPLASFRWARGMTVVAA 214

Query: 264 LVDVFVYMVRFGMISWLPIYLLTVKHFSKEQMSVAFLFFEWA---AIPSTLLAGWLSDKL 320
L+ VF M G + + F + ++ + ++ ++ G ++ +L
Sbjct: 215 LMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARL 274

Query: 321 FKGRRMPLAMICMALIFVCLIGYWKSESLLMVTIFAAIVGCLIYVPQFLASVQTMEIVPS 380
+ R + L MI ++ L + + + A G + Q + S Q E
Sbjct: 275 GERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG 334

Query: 381 FAVGSAVGLRGFMSYIFGASLGTSLFGVMVDKLGWYGGFYLLMGGIVCCILFCYLSHRGA 440
GS L ++ I G L T+++ + + G+ + G + + L RG
Sbjct: 335 QLQGSLAALTS-LTSIVGPLLFTAIYAA---SITTWNGWAWIAGAALYLLCLPAL-RRGL 389

Query: 441 LELERQRQN 449
QR +
Sbjct: 390 WSGAGQRAD 398


101SeKA_A2244SeKA_A2253N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2244214-1.986856DNA repair protein RecN
SeKA_A22454163.884060small protein A
SeKA_A22463163.983820protein YfjF
SeKA_A22472153.968763polyketide cyclase/dehydrase family protein
SeKA_A22482153.930670SsrA-binding protein
SeKA_A22492143.477943hypothetical protein
SeKA_A22502143.702238conserved hypothetical protein
SeKA_A2251-117-1.967776type I secretion outer membrane protein, TolC
SeKA_A2252022-4.029629protein secretion ABC efflux system, permease
SeKA_A2253131-8.888213type I secretion membrane fusion protein, HlyD
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2244RTXTOXIND320.009 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 31.7 bits (72), Expect = 0.009
Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 36/198 (18%)

Query: 177 QQQSQERAARAELLQYQLKELNDFNPQAGEFEQIDEEYKRLANSGQLLTTSQNALALLAD 236
+ QS AR E +YQ+ + + E + DE Y + + ++L + +
Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS- 196

Query: 237 GEDVNLQSQLYSAKQLVSELVGMDSKLSGILDMLEEATIQLTEASDELRHYCERLDLDPN 296
Q+Q Y Q L ++ +L A I E +
Sbjct: 197 ----TWQNQKY---QKELNLDKKRAERLTVL-----ARINRYENLSRV------------ 232

Query: 297 RLFELEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQQLDDQADSLETLTLAVNKHHQQ 356
+ R+ SL K ++ ++LE++ + + + L + + +
Sbjct: 233 ----EKSRLDDFSSLLHKQAIA-------KHAVLEQENKYVEAVNELRVYKSQLEQIESE 281

Query: 357 ALETAQALHQQRQFYAQE 374
L + Q + E
Sbjct: 282 ILSAKEEYQLVTQLFKNE 299


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2247FLGMOTORFLIM270.027 Flagellar motor switch protein FliM signature.
		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

Length = 344

Score = 27.2 bits (60), Expect = 0.027
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 49 GSRVLESSPAQMTAAVDVSKAGISKTFTTRNQLTRNQSILMHLVDGPFKKLIGGWK---- 104
G+ VLE P+ + +D G + + LT I +++G +++ +
Sbjct: 113 GNAVLEVDPSITFSIIDRLFGGTGQAAKVQRDLT---DIENSVMEGVIVRILANVRESWT 169

Query: 105 -FTPLSPEACRIEFQLDF 121
L P +IE F
Sbjct: 170 QVIDLRPRLGQIETNPQF 187


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2250INTIMIN489e-07 Intimin signature.
		>INTIMIN#Intimin signature.

Length = 939

Score = 47.8 bits (113), Expect = 9e-07
Identities = 83/381 (21%), Positives = 125/381 (32%), Gaps = 55/381 (14%)

Query: 2334 ITVIAVDAAGNAS-PVSDSVNFVVDTTPPLTPVITSVSDDQAPGLGTIANGQN--TNDPT 2390
+T A D GN+S V ++ + + V+D A A+G T T
Sbjct: 527 VTARAYDRNGNSSNNVLLTITVL---SNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583

Query: 2391 PTFSGTAEAG--ATITLYENGTVIGTTTAQPDGAWSVATSTLASGTHVITAVATDAAGNS 2448
+G A+A + + V+ +A +G+ AT TL S V+ A +
Sbjct: 584 VKKNGVAQANVPVSFNIVSGTAVLSANSANTNGS-GKATVTLKSDKPGQVVVSAKTAEMT 642

Query: 2449 SP-NSTAFTLTVDTTAPQTPILTSVVDDVAGGVTGNLANGQ--ITNDNRPTLNGTAEAGS 2505
S N+ A T A T I A +ANGQ IT + +
Sbjct: 643 SALNANAVIFVDQTKASITEI--KADKTTA------VANGQDAITYTVKVMKGDKPVSNQ 694

Query: 2506 VVSIYDGNTLLGVTSANAGGAWSFTPTTGLNDGTRTLTVTATDPA-GNVSPATSGFTIVV 2564
VT G S + +G +T+T+T P VS S + V
Sbjct: 695 -----------EVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSD--VAV 741

Query: 2565 DTLAPTVPLITSIVDDVPNNTGAIGNGQSTNDTQPTLNGTAEANSTVSIFDNGALVATVN 2624
D AP V T++ D N +G G L + L A+
Sbjct: 742 DVKAPEVEFFTTLTIDDGNIEI-VGTGVKGKLPTVWLQ-----------YGQVNLKASGG 789

Query: 2625 ANASGNWSWT---PTAALSQGSHAYSVSAADAAGNVSAASPSTTIIVDTIAPGAPGNLVI 2681
+G ++W P A S +S S TIA P +L++
Sbjct: 790 ---NGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTIA--TPNSLIV 844

Query: 2682 NATGNRVTGTAEAGSTVTITS 2702
RVT +A +T
Sbjct: 845 PNMSKRVT-YNDAVNTCKNFG 864



Score = 43.1 bits (101), Expect = 2e-05
Identities = 66/311 (21%), Positives = 102/311 (32%), Gaps = 30/311 (9%)

Query: 2724 TPAQTNGQPLLAFTQDKAGNTGIAAGFTAPDTRVPEAPIITNVVDDVGIYTGAIANGQ-- 2781
+N + A D+ GN+ T + V D T A A+G
Sbjct: 518 VQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEA 577

Query: 2782 VTNDAQPTLNGTAQAGATVS--IYNNGALLGTTTANASGNWSFTPTGNLTEGSHAFT-AT 2838
+T A NG AQA VS I + A+L +AN +G+ T T L +
Sbjct: 578 ITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVT--LKSDKPGQVVVS 635

Query: 2839 ATNANGTGSVSTAATVIVDTLAPGTPSGTLSADGGSLSGQAEANSTVTVTLAGG------ 2892
A A T +++ A + VD +GQ TV V
Sbjct: 636 AKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQE 695

Query: 2893 VTLTTTAG----------SNGAWSLTLPTKQIEGQLINVTATDAAGN-ASGALGITAPVL 2941
VT TTT G +NG +TL + L++ +D A + + + +
Sbjct: 696 VTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLT 755

Query: 2942 PLAARDNITSLDLTSTAVTSTQNYSDYGLLLVGALGNVASVLGN------DTAQVEFTIA 2995
I + T Y L G G N D + + T+
Sbjct: 756 IDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLK 815

Query: 2996 EGGTGDVTIDA 3006
E GT +++ +
Sbjct: 816 EKGTTTISVIS 826



Score = 38.9 bits (90), Expect = 5e-04
Identities = 78/368 (21%), Positives = 135/368 (36%), Gaps = 41/368 (11%)

Query: 2197 IYNGSALVGTA-QVQANGSWSFT-------PSTSLGAGVWNLTATATDAAGNTSAASEIR 2248
+++ SAL Q+Q +GS S G+ V+ +TA A D GN+S + +
Sbjct: 486 VWDDSALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSS-NNVLL 544

Query: 2249 SFTIDTTAPAAPVIDTVYDGTGPITGNLSSGQ--ITDEARPVISGTREAN--TAIRLYDN 2304
+ T+ + V D T T + G IT A +G +AN + +
Sbjct: 545 TITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSG 603

Query: 2305 GTLLAEIPADNSSSWRYTPDASLATGNHVITVIAVDAAGNASPV-SDSVNFVVDTTPPLT 2363
+L+ A+ + S + T +L + V++ A S + +++V FV T +T
Sbjct: 604 TAVLSANSANTNGSGKAT--VTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASIT 661

Query: 2364 PVITSVSDDQAPGLGTIANGQN--TNDPTPTFSGTAEAGATITLYENGTVIGTTTAQPDG 2421
+ A +ANGQ+ T + +T + +T + D
Sbjct: 662 EI--KADKTTA-----VANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTD- 713

Query: 2422 AWSVATSTLASGTHVITAVATDAAGNSSPNSTAFTLTVDTTAPQTPILTSVVDDVAGGVT 2481
A TL S T + +A S V+ T I ++ V GV
Sbjct: 714 TNGYAKVTLTSTT---PGKSLVSARVSDVAVDVKAPEVEFFTTLT-IDDGNIEIVGTGVK 769

Query: 2482 GNLANGQITNDNRPTLNGTAEAGSV-VSIYDGNTLLGVTSANAGGAWSFTPTTGLNDGTR 2540
G L + +N A G+ + N + A++G T GT
Sbjct: 770 GKLPTVWL---QYGQVNLKASGGNGKYTWRSANPAIASVDASSG------QVTLKEKGTT 820

Query: 2541 TLTVTATD 2548
T++V ++D
Sbjct: 821 TISVISSD 828



Score = 38.5 bits (89), Expect = 6e-04
Identities = 61/272 (22%), Positives = 88/272 (32%), Gaps = 22/272 (8%)

Query: 1508 TLPVTSALPDGVYTLTAIAADAAGNSSGVSNSFTFTVDTVPLQPPVVN--EILDDVAPVT 1565
LP VY +TA A D GNS SN+ T+ TV VV+ + D A T
Sbjct: 513 ILPAYVQGGSNVYKVTARAYDRNGNS---SNNVLLTI-TVLSNGQVVDQVGVTDFTADKT 568

Query: 1566 GPLTDG--AFTNDRTLTINGSGENGSTVTIYDNGVAIGTALVTDGVWTFN-----TPELS 1618
DG A T T+ NG + V+ + GTA+++ N T L
Sbjct: 569 SAKADGTEAITYTATVKKNGVAQANVPVSF---NIVSGTAVLSANSANTNGSGKATVTLK 625

Query: 1619 EVSHALTFSATDDAGNTTAQTQPITITVDITAPPAPTIQTVDDDGTRVAGLADPYA-TVE 1677
+ A T+A I VD T I+ T VA D TV+
Sbjct: 626 SDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKT--TAVANGQDAITYTVK 683

Query: 1678 IHHADGTLVGSAVANGTGEFVVTLSPAQTDGGTLTAIAIDRAGNNGPATNFPASDSGLPA 1737
+ D + V T ++ S +TD + + + G +
Sbjct: 684 VMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLT-STTPGKSLVSARVSDVAVD 742

Query: 1738 VPAITAIEDDVGSVQGNIAA--GGATDDTTPT 1767
V A ++ G PT
Sbjct: 743 VKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPT 774


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2251RTXTOXIND355e-04 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 35.2 bits (81), Expect = 5e-04
Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 32/224 (14%)

Query: 209 DVVQTEARIESARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPD 268
+ EA +S L Q + + S D P S E
Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187

Query: 269 DRLVPAVLAAW-AQANVARANLDYASAQ---MTPTISLEPSVQHYLNDKYPSHEVLDKTQ 324
L+ + W Q NLD A+ + I+ ++ + L Q
Sbjct: 188 TSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQ 247

Query: 325 YSTWVKVEMPLYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASAL 384
V + ++ +L +SQ + S
Sbjct: 248 AIAKHAVL-------------------------EQENKYVEAVNELRVYKSQLEQIES-- 280

Query: 385 QILRRQQQLSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARF 428
+IL +++ T +L++ + LD + ++ E+ +
Sbjct: 281 EILSAKEEYQLVT-QLFKNEILDKLRQTTDNIGLLTLELAKNEE 323


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2253RTXTOXIND2411e-77 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 241 bits (617), Expect = 1e-77
Identities = 95/432 (21%), Positives = 175/432 (40%), Gaps = 56/432 (12%)

Query: 18 ERAFSGAGRIVLICSLLFLILGI-WAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQ 76
E S R+V + FL++ + G+++ V+T NGK+ S R + ++ ++ I+ +
Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109

Query: 77 LTVREGDRVQANQIVARLDPTRLASSVGESAAKYRASLASSARLTAEVSDLPL------- 129
+ V+EG+ V+ ++ +L + ++ + + R + L
Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169

Query: 130 --AFPAELNGWPDLIAAETRLYKSR-----------RAQLADTEAELRDALASVNK---- 172
P N + + T L K + L AE LA +N+
Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229

Query: 173 ------ELTITQRLEKSGAASHVEVLRLQRQKSDLG---------------------LKI 205
L L A + VL + + + +
Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289

Query: 206 TDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGV 265
+ + + + L + + +L+ L E+ +R+PV V+ ++V T GGV
Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349

Query: 266 IPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETIS 325
+ +M IVP DD L + + +DI FI+ GQ A++K+ A+ Y YG L G V+ I+
Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409

Query: 326 PDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKP 385
D I+D+ + V I ++ L + + GM T +IKTG ++++ YL+ P
Sbjct: 410 LDAIEDQRLGL--VFNVIISIEENCLSTG-NKNIPLSSGMAVTAEIKTGMRSVISYLLSP 466

Query: 386 F-NRAKEALRER 396
E+LRER
Sbjct: 467 LEESVTESLRER 478


102SeKA_A2320SeKA_A2327N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2320-3110.657548ABC superfamily
SeKA_A2321-3110.172350major facilitator family transporter
SeKA_A2322-212-1.168277transcriptional repressor MprA
SeKA_A2323-311-0.838195multidrug resistance protein A
SeKA_A2324-312-1.155063multidrug resistance protein B
SeKA_A2325-315-2.307275putative glycoporin
SeKA_A2326-316-0.790968conserved hypothetical protein
SeKA_A2327-1130.836032S-Ribosylhomocysteinase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2320PF06057300.014 Type IV secretory pathway VirJ component
		>PF06057#Type IV secretory pathway VirJ component

Length = 243

Score = 29.8 bits (67), Expect = 0.014
Identities = 8/55 (14%), Positives = 17/55 (30%)

Query: 277 FAIMKLPLADINAQNAMMHAGKSSEADVQGHVDGWINAHQQQFDGWVKEALAAQK 331
F + ++P + S +D + HV + + Q + Q
Sbjct: 133 FVLNEMPARYRKNVLGAVLLSPSQSSDFEIHVSEMVTSDNQSARYLTLPEVNKQT 187


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2321TCRTETB461e-07 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 46.4 bits (110), Expect = 1e-07
Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 2/165 (1%)

Query: 34 LDTIAHHFSLSASSAGFIVTAAQLGYAAGLLFLVPLGDMFE-RRTLIVSMTLLAAGGMLI 92
L IA+ F+ +S ++ TA L ++ G L D +R L+ + + G ++
Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96

Query: 93 TASSQSLSMMILGTALTGLFSVVAQILVPLA-ATLATPATRGKVVGTIMSGLLLGILLAR 151
S++I+ + G + LV + A RGK G I S + +G +
Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156

Query: 152 TVAGLLANLGGWRTVFWVASALMALMAVALWRGLPKLKSDTHLNY 196
+ G++A+ W + + + + + +++ H +
Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2323RTXTOXIND764e-17 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 76.0 bits (187), Expect = 4e-17
Identities = 62/418 (14%), Positives = 126/418 (30%), Gaps = 97/418 (23%)

Query: 19 KRKTALLLLTLLFVIIAVAYGIYWFLVLRHIEETDDA----YVAGNQVQIMAQVSGSVTK 74
+ L F++ + VL +E A +G +I + V +
Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILS-VLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109

Query: 75 VWADNTDFVKEGDVLVTLDQT--------------------------------------- 95
+ + V++GDVL+ L
Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169

Query: 96 -------------DAKQAFEKAKTALASSVRQTHQLMINSKQ-------LQANIDVQKTA 135
+ + K ++ Q +Q +N + + A I+ +
Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229

Query: 136 LAQAQSDLNRRVPLGNANLIGREELQHARDAVASAQAQLDVAIQQYNANQAMILNSKLED 195
+S L+ L + I + + + A +L V Q ++ IL++K E
Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289

Query: 196 QPAVQQAATEVRN------------------AWLALERTRIVSPMTGYVSRRAVQ-PGAQ 236
Q Q E+ + + + I +P++ V + V G
Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349

Query: 237 ISPTTPLMAVVPATD-LWVDANFKETQLANMRIGQPVTVITDIYGDDVKY---TGKVVGL 292
++ LM +VP D L V A + + + +GQ + + + +Y GKV +
Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF-PYTRYGYLVGKVKNI 408

Query: 293 DMGTGSAFSLLPAQNATGNWIKVVQRLPVRVELDARQLEQHPLRIGLSTLVTVDTANR 350
+ ++ G V+ + + PL G++ + T R
Sbjct: 409 -----NLDAIE--DQRLGLVFNVIISIEENCLSTGNK--NIPLSSGMAVTAEIKTGMR 457


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2324TCRTETB1298e-35 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 129 bits (326), Expect = 8e-35
Identities = 94/405 (23%), Positives = 164/405 (40%), Gaps = 23/405 (5%)

Query: 17 IALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPLTGWLAKRF 76
I L + +F VL+ + NV++P IA + + WV T+F + +I + G L+ +
Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76

Query: 77 GEVKLFMWSTVAFAAASWACGVS-SSLNMLIFFRVVQGVVAGPLIPLSQSLLLNNYPPAK 135
G +L ++ + S V S ++LI R +QG A L ++ P
Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136

Query: 136 RSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGIAVVLMTLHTLRGRETH 195
R A L V + GP +GG I+ HW ++ I + I I V + L+
Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRI 195

Query: 196 TERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVVAVIAISFLIVWELTD 255
D G+ L+ +GI + ML F++ I +V+V++ +
Sbjct: 196 KG--HFDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKV 243

Query: 256 DHPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGI 315
P VD L K+ F IG LC + + G + ++P ++++V+ + G G
Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303

Query: 316 IPVILS-PIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAWTFEPGMDFGASAWPQFIQGF- 373
+ VI+ I G + ++ +V F ++ S + I F
Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL-----LETTSWFMTIIIVFV 358

Query: 374 --AVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSI 416
++ ++TI S L + A SL NFT L+ G +I
Sbjct: 359 LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2327LUXSPROTEIN287e-103 Bacterial autoinducer-2 (AI-2) production protein Lu...
		>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS

signature.
Length = 171

Score = 287 bits (736), Expect = e-103
Identities = 130/170 (76%), Positives = 145/170 (85%)

Query: 2 PLLDSFAVDHTRMQAPAVRVAKTMNTPHGDAITVFDLRFCIPNKEVMPEKGIHTLEHLFA 61
PLLDSF VDHTRM APAVRVAKTM TP GD ITVFDLRF PNK+++ EKGIHTLEHL+A
Sbjct: 1 PLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYA 60

Query: 62 GFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAWKAAMADVLKVQDQNQIP 121
GFMR+HLNG+ VEIIDISPMGCRTGFYMSLIGTP EQ+VADAW AAM DVLKV++QN+IP
Sbjct: 61 GFMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIP 120

Query: 122 ELNVYQCGTYQMHSLSEAQDIARHILERDVRVNSNKELALPKEKLQELHI 171
ELN YQCGT MHSL EA+ IA++ILE V VN N ELALP+ L+EL I
Sbjct: 121 ELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELALPESMLRELRI 170


103SeKA_A2393SeKA_A2413N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2393230-7.927049effector protein SptP
SeKA_A2394124-5.395189secretion chaparone
SeKA_A2395124-5.226743hypothetical protein
SeKA_A2396123-5.755712acyl carrier protein
SeKA_A2397122-5.210535cell invasion protein SipA
SeKA_A2398220-5.313754type III effector protein IpaD/SipD/SspD
SeKA_A2400122-6.001313cell invasion protein SipB
SeKA_A2401-127-6.810691type III secretion low calcium response
SeKA_A2402-126-5.966913surface presentation of antigens protein SpaS
SeKA_A2403-126-5.225252type III secretion apparatus protein
SeKA_A2404-223-3.746001EpaQ
SeKA_A2405-124-4.014624type III secretion apparatus protein, YscR/HrcR
SeKA_A2406-123-4.401605type III secretion apparatus protein, YscQ/HrcQ
SeKA_A2407-124-5.649793antigen presentation protein SpaN
SeKA_A2408-123-6.088004virulence-associated secretory protein
SeKA_A2409-223-5.980282flagellum-specific ATP synthase
SeKA_A2410-126-7.729582surface presentation of antigens protein SpaK
SeKA_A2411-126-8.396258invasion protein InvA
SeKA_A2412-128-8.547876invasion protein InvE
SeKA_A2413029-8.352094type III secretion outer membrane pore,
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2393BACYPHPHTASE2972e-97 Salmonella/Yersinia modular tyrosine phosphatase si...
		>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase

signature.
Length = 468

Score = 297 bits (761), Expect = 2e-97
Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 17/212 (8%)

Query: 332 GKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQ--LPPYFRGSYTFG 389
G +A YP LE+H +ML E L VL S ++ ++ +P YFR S T+G
Sbjct: 252 GNTRTIACQYP--LQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYG 309

Query: 390 EVHTNSQKVSSASQGGAV--DQYNMQL-SCGEKRYTIPVLHVKNWPDHQPLPS--TNQLE 444
+ S+ G + D Y + + G+K ++PV+HV NWPD + S T L
Sbjct: 310 SITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALA 369

Query: 445 YLADIVKNSNQNGAPGRSS-----PDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNL-- 497
L D + +N + S K P+IHC GVGRT + A+ + D+ +S L
Sbjct: 370 SLVDQTAETKRNMYESKGSSAVGDDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSV 429

Query: 498 EQVRADFRDSRNNRMLEDASQF-VQLKAMQAQ 528
E + + R RN M++ Q V +K + Q
Sbjct: 430 EDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQ 461


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2394PF05932425e-08 Tir chaperone protein (CesT)
		>PF05932#Tir chaperone protein (CesT)

Length = 127

Score = 42.1 bits (99), Expect = 5e-08
Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 2 QAHQDIIANIGEKLGL-PLTFDDNNQCLLLLDSDIFTSIEAK--DDIWLLNGMIIPLSPV 58
++ ++ + L + PL FDD+ C +++D+ ++ + LL G++ P
Sbjct: 4 LFYKTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLEPH--- 60

Query: 59 CGDSIWRQIMVINGELAANNEGTLAYIDAAETLLFIHAI-TDLTNTYHIISQLESFVNQQ 117
D + ++ N L + + +I + + + ++ +
Sbjct: 61 -KDIPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWM 119

Query: 118 EALKNILQ 125
+ Q
Sbjct: 120 RGWREASQ 127


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2400BACINVASINB8390.0 Salmonella/Shigella invasin protein B signature.
		>BACINVASINB#Salmonella/Shigella invasin protein B signature.

Length = 593

Score = 839 bits (2168), Expect = 0.0
Identities = 591/593 (99%), Positives = 591/593 (99%)

Query: 1 MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGE 60
MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGE
Sbjct: 1 MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVVATKAGDLKAGTKSGE 60

Query: 61 SAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE 120
SAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE
Sbjct: 61 SAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLSQLESRLAVWQAMIESQKE 120

Query: 121 MGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAAAKKLTQAQNKLQSLDPADPG 180
MGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAA KKLTQAQNKLQSLDPADPG
Sbjct: 121 MGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPG 180

Query: 181 YAQAEAAVEQAGKEATEAKEALDKATDAAVKAGTDAKAKAEKADNILTKFQGTANAASQN 240
YAQAEAAVEQAGKEATEAKEALDKATDA VKAGTDAKAKAEKADNILTKFQGTANAASQN
Sbjct: 181 YAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTANAASQN 240

Query: 241 QVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEF 300
QVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEF
Sbjct: 241 QVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEF 300

Query: 301 QEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAA 360
QEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAA
Sbjct: 301 QEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAVMVADEIVKAA 360

Query: 361 TGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMV 420
TGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMV
Sbjct: 361 TGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMV 420

Query: 421 AVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLG 480
AVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLG
Sbjct: 421 AVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLG 480

Query: 481 NVGSKMGLQTNALSKELVGNTLNKVALGMEVTNTAAQSAGGVAEGVFIKNASEALADFML 540
NVGSKMGLQTNALSKELVGNTLNKVALGMEVTNTAAQSAGGVAEGVFIKNASEALADFML
Sbjct: 481 NVGSKMGLQTNALSKELVGNTLNKVALGMEVTNTAAQSAGGVAEGVFIKNASEALADFML 540

Query: 541 ARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQSRA 593
ARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQSRA
Sbjct: 541 ARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQSRA 593


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2401SYCDCHAPRONE1282e-40 Gram-negative bacterial type III secretion SycD cha...
		>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD

chaperone signature.
Length = 168

Score = 128 bits (322), Expect = 2e-40
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 4 QNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFL 63
Q + + + G T+ ++ I D ++ LY+ A+ Y G+ ++A F+ L
Sbjct: 3 QETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQAL 62

Query: 64 CIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123
C+ D Y+ + +GL A Q Q+ A Y+ + + R F +C L + A+
Sbjct: 63 CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAE 122

Query: 124 ARQCF----ELVNERTEDESLRAKALVYLEALKTAETEQH 159
A EL+ ++TE + L + LEA+K + +H
Sbjct: 123 AESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEMEH 162


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2402TYPE3IMSPROT340e-118 Type III secretion system inner membrane S protein ...
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

family signature.
Length = 354

Score = 340 bits (875), Expect = e-118
Identities = 120/360 (33%), Positives = 205/360 (56%), Gaps = 19/360 (5%)

Query: 1 MSSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSYGSFN-EFMGIIKIII 59
MS KTE+PT K++ D+ KKGQ KSK+++ L + A L+ + E + +I
Sbjct: 1 MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIP 60

Query: 60 ADNFDQSMADYSLAVFGIGLKYLIPFMLLCL---VCSALPAL----LQAGFVLATEALKP 112
+QS +S A+ + L+ F LC +AL A+ +Q GF+++ EA+KP
Sbjct: 61 ---AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKP 117

Query: 113 NLSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQLNGNIVGIA 172
++ +NP+EGAK++FS++++ + +K++L + V+ +I+ W K + + L GI
Sbjct: 118 DIKKINPIEGAKRIFSIKSLVEFLKSILKV---VLLSILIWIIIKGNLVTLLQLPTCGIE 174

Query: 173 VIWRELLLALVLTCLACA---LIVLLLDAIAEYFLTMKDMKMDKEEVKREMKEQEGNPEV 229
I L L + C +++ + D EY+ +K++KM K+E+KRE KE EG+PE+
Sbjct: 175 CITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEI 234

Query: 230 KSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVYETNQRALA 289
KSKRR+ H EI S ++ +++ S ++VANPTHI IGI +K P+P+++ T+ +
Sbjct: 235 KSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQT 294

Query: 290 VRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLE--EVENAGKDVI 347
VR AE+ GVP++ I LAR+L+ + E+I+ +L WLE +E +++
Sbjct: 295 VRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML 354


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2403TYPE3IMRPROT1883e-61 Type III secretion system inner membrane R protein ...
		>TYPE3IMRPROT#Type III secretion system inner membrane R protein

family signature.
Length = 261

Score = 188 bits (478), Expect = 3e-61
Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 4/237 (1%)

Query: 12 LVASAALGFARVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVAMI 71
+ RV + P L+ + + + +++ + P P S +
Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFAL 71

Query: 72 PLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNM 131
L +Q+ +G+ LG + + F + G II Q G + ++ +DPA+ ++ +A ++M
Sbjct: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131

Query: 132 FAAVVYLQNGGLVTMVDVLNKSYQLCDPMNEC--TPSLPPLLTFINQVAQNALVLASPVV 189
A +++L G + ++ +L ++ E + + L + + N L+LA P++
Sbjct: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLI 191

Query: 190 LVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFS--PVLPDNVLRLSF 244
+LL + LGLL+R APQ++ F I + + + +M +++ F
Sbjct: 192 TLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIF 248


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2404TYPE3IMQPROT894e-27 Type III secretion system inner membrane Q protein ...
		>TYPE3IMQPROT#Type III secretion system inner membrane Q protein

family signature.
Length = 86

Score = 88.7 bits (220), Expect = 4e-27
Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1 MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL 60
MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL
Sbjct: 1 MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCL 60

Query: 61 FLLSGWYGEVLLSYGRQVIFLALAKG 86
FLLSGWYGEVLLSYGRQVIFLALAKG
Sbjct: 61 FLLSGWYGEVLLSYGRQVIFLALAKG 86


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2405TYPE3IMPPROT303e-107 Type III secretion system inner membrane P protein ...
		>TYPE3IMPPROT#Type III secretion system inner membrane P protein

family signature.
Length = 224

Score = 303 bits (777), Expect = e-107
Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1 MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60
MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS
Sbjct: 1 MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLS 60

Query: 61 MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120
MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL
Sbjct: 61 MFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQL 120

Query: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180
KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL
Sbjct: 121 KRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVL 180

Query: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIAT 224
LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIAT
Sbjct: 181 LALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDIAT 224


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2406TYPE3OMOPROT5390.0 Type III secretion system outer membrane O protein ...
		>TYPE3OMOPROT#Type III secretion system outer membrane O protein

family signature.
Length = 303

Score = 539 bits (1389), Expect = 0.0
Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1 MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWL 60
MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWL
Sbjct: 1 MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLSDAEKRWSAWIKPGDWL 60

Query: 61 EHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLL 120
EHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLL
Sbjct: 61 EHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLCVENPVPGSALPEGKLL 120

Query: 121 HIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTS 180
HIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTS
Sbjct: 121 HIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTS 180

Query: 181 RAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYR 240
RAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYR
Sbjct: 181 RAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEFVLYR 240

Query: 241 KNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESG 300
KNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESG
Sbjct: 241 KNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEWLSESG 300

Query: 301 NGE 303
NGE
Sbjct: 301 NGE 303


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2407SSPANPROTEIN5940.0 Salmonella invasion protein InvJ signature.
		>SSPANPROTEIN#Salmonella invasion protein InvJ signature.

Length = 336

Score = 594 bits (1533), Expect = 0.0
Identities = 330/336 (98%), Positives = 333/336 (99%)

Query: 1 MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETAL 60
MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETAL
Sbjct: 1 MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKKDRDYGDAFVMHKETAL 60

Query: 61 PVLLAAWRHGAPAKSEHHNGNVSGLHHNGKGELRIAEKLLKVTAEKSVGLISAEAKVDKS 120
P+LLAAWRHGAPAKSEHHNGNVSGLHHNGK ELRIAEKLLKVTAEKSVGLISAEAKVDKS
Sbjct: 61 PLLLAAWRHGAPAKSEHHNGNVSGLHHNGKSELRIAEKLLKVTAEKSVGLISAEAKVDKS 120

Query: 121 AALLSPKNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVR 180
AALLS KNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVR
Sbjct: 121 AALLSSKNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVR 180

Query: 181 KEGAPLARDVAPAQMAAANTGKPDDKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMPSA 240
KEGAPLARDVAPA+MAAANTGKP+DKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMP A
Sbjct: 181 KEGAPLARDVAPARMAAANTGKPEDKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMPLA 240

Query: 241 AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLH 300
AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLH
Sbjct: 241 AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLH 300

Query: 301 DQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA 336
DQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA
Sbjct: 301 DQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA 336


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2408SSPAMPROTEIN1672e-56 Salmonella surface presentation of antigen gene typ...
		>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M

signature.
Length = 147

Score = 167 bits (423), Expect = 2e-56
Identities = 141/147 (95%), Positives = 143/147 (97%)

Query: 1 MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRGLQAEEEAILEQIAGLKLLLDTLRAEN 60
MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDR LQ EEEAI+EQIAGLKLLLDTLRAEN
Sbjct: 1 MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRRLQVEEEAIVEQIAGLKLLLDTLRAEN 60

Query: 61 RQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQKKSKYWLRKEGNY 120
RQLSREEIY LLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQ+KSKYWLRKEGNY
Sbjct: 61 RQLSREEIYALLRKQSIVRRQIKDLELQIIQIQEKRSELEKKREEFQEKSKYWLRKEGNY 120

Query: 121 QRWIIRQKRHYIQREIQQEEAESEEII 147
QRWIIRQKR YIQREIQQEEAESEEII
Sbjct: 121 QRWIIRQKRLYIQREIQQEEAESEEII 147


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2410SSPAKPROTEIN2063e-72 Invasion protein B family signature.
		>SSPAKPROTEIN#Invasion protein B family signature.

Length = 133

Score = 206 bits (525), Expect = 3e-72
Identities = 43/133 (32%), Positives = 76/133 (57%)

Query: 1 MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGA 60
M ++++ +LVR +L GC PS+I +DSHS I + L ++P+I I++ ++ V +WA A
Sbjct: 1 MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAINIALVNEQVMLWANFDA 60

Query: 61 DSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKALVHPDFLSDGEKFSTALN 120
S V LQ AY IL ++ ++ + L + L L+ ++ D++ DG F+ L+
Sbjct: 61 PSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILH 120

Query: 121 GFYNYLEVFSRSL 133
FY +E+ + L
Sbjct: 121 EFYQRMEILNGVL 133


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2412INVEPROTEIN6040.0 Salmonella/Shigella invasion protein E (InvE) signat...
		>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE)

signature.
Length = 372

Score = 604 bits (1558), Expect = 0.0
Identities = 371/372 (99%), Positives = 371/372 (99%)

Query: 1 MIPGSTSGISFSRILSRQTSHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSA 60
MIPGSTSGISFSRILSRQ SHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSA
Sbjct: 1 MIPGSTSGISFSRILSRQASHQDATQHTDAQQAEIQQAAEDSSPGAEVQKFVQSTDEMSA 60

Query: 61 ALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFP 120
ALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFP
Sbjct: 61 ALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGALEDFLRQARSLFP 120

Query: 121 DPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLS 180
DPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLS
Sbjct: 121 DPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPKTLKAGINCALKARLFGKTLS 180

Query: 181 LKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSR 240
LKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSR
Sbjct: 181 LKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDASCSR 240

Query: 241 LEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSL 300
LEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSL
Sbjct: 241 LEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSL 300

Query: 301 LADIIGLNALLLSHKEHASFLQIFYQVCKAIPSSLFYEEYWQEELLMALRSMTDIAYKHE 360
LADIIGLNALLLSHKEHASFLQIFYQVCKAIPSSLFYEEYWQEELLMALRSMTDIAYKHE
Sbjct: 301 LADIIGLNALLLSHKEHASFLQIFYQVCKAIPSSLFYEEYWQEELLMALRSMTDIAYKHE 360

Query: 361 MAEQRRTIEKLS 372
MAEQRRTIEKLS
Sbjct: 361 MAEQRRTIEKLS 372


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2413TYPE3OMGPROT5320.0 Type III secretion system outer membrane G protein ...
		>TYPE3OMGPROT#Type III secretion system outer membrane G protein

family signature.
Length = 607

Score = 532 bits (1371), Expect = 0.0
Identities = 154/491 (31%), Positives = 250/491 (50%), Gaps = 50/491 (10%)

Query: 1 MALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIYDASEMR 60
V+VS K++G FE +P L+ ++ L+WY+DG +YI+ SE+
Sbjct: 52 FGANYDATVVVSD-KINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVA 110

Query: 61 NAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMMDK 120
+ ++ L+ E L+RSG++ + R D YVSGPP Y+++V A +++
Sbjct: 111 SRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQ 170

Query: 121 QND--GIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGEEQPLGNIV 178
Q + G I + L DRT + RD ++ PG+AT ++R+L +
Sbjct: 171 QTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVD 230

Query: 179 SSEPPAMPAFSANGEKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQ 238
+ P Q A + +A A ++ A P N+++V+ + E+
Sbjct: 231 NQRIP-----------------------QAATRASAQA---RVEADPSLNAIIVRDSPER 264

Query: 239 VHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSI-----------TIGDKL 287
+ + L+ ALD +E++L IVD+N L LG W I T GD+
Sbjct: 265 MPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQS 324

Query: 288 GVSLNQSSISTLDG---SRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 344
++ N + S +D +A VN LE + A VVSRP LLTQEN A+ D++ T+Y K
Sbjct: 325 NIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVK 384

Query: 345 LIGERNVALEHVTYGTMIRVLPRFSADG---QIEMSLDIEDGNDKTPQSDTTTSVDALPE 401
+ G+ L+ +TYGTM+R+ PR G +I ++L IEDGN Q ++ ++ +P
Sbjct: 385 VTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGN----QKPNSSGIEGIPT 440

Query: 402 VGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVVR 461
+ RT++ T+ARV HG+SL++GG RD + + +P LG +P IG+LFR S+ VR
Sbjct: 441 ISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRRTVR 500

Query: 462 VFMIEPKEIVD 472
+F+IEP+ I +
Sbjct: 501 LFIIEPRIIDE 511


104SeKA_A2474SeKA_A2482N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A24740210.289380phosphopyruvate hydratase
SeKA_A2475-1120.736673CTP synthase
SeKA_A24760111.011984nucleoside triphosphate pyrophosphohydrolase
SeKA_A24772131.034050putative fimbrial subunit
SeKA_A2478213-0.756302fimbrial usher protein
SeKA_A2479530-6.354328chaperone protein PapD
SeKA_A2480737-7.740908fimbrial subunit
SeKA_A2481122-4.788692fimbrial subunit
SeKA_A2482-119-3.782100fimbrial subunit
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2474ANTHRAXTOXNA290.036 Anthrax toxin LF subunit signature.
		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.

Length = 800

Score = 29.3 bits (65), Expect = 0.036
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 211 GYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLA-----GEGN 265
P L N + A+ +E K YE+GK I+L + + ++ + +
Sbjct: 147 RETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDSS 206

Query: 266 KAFTSEEFTHFLEELTKQYPIVSIEDGLDESDW---DGFAYQTKVLG-DKIQLVGDDLFV 321
S++F LE K I I++ L E F+Y ++L D+F
Sbjct: 207 DLLFSQKFKEKLELNNKSIDINFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFE 266

Query: 322 TNTKILKEGIEK 333
K+ K G EK
Sbjct: 267 YMNKLEKGGFEK 278


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2478PF005777020.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 702 bits (1813), Expect = 0.0
Identities = 216/867 (24%), Positives = 372/867 (42%), Gaps = 70/867 (8%)

Query: 2 LLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEF 61
+ +P S++ ++ FN FL + ++++F + PG Y + I +N +
Sbjct: 36 FAAQAPLSSA--ELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATR- 92

Query: 62 PVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSL-KGMDFQA 120
V + QG C + +G+ + + + C+ S+ Q
Sbjct: 93 DVTFN-TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLL--ADDACVPLTSMIHDATAQL 149

Query: 121 DLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSIS 180
D+G L + +PQA+M + PP WD GI +L+YN + ++ G+
Sbjct: 150 DVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNS-HYAY 208

Query: 181 GNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGES 240
N G N+GAWRLR + SY+ D + + R + L ++LTLG+
Sbjct: 209 LNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKN--KWQHINTWLERDIIPLRSRLTLGDG 266

Query: 241 YLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVP 300
Y Q D+FD N+ GA + SDD MLP RG+AP I GIAR A+V + G +Y + VP
Sbjct: 267 YTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVP 326

Query: 301 AGPFRIQDLNQ-SVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDW 359
GPF I D+ SG L VT++E +G TQ F V +SVP L R G RY + G +
Sbjct: 327 PGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSG 386

Query: 360 DHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIA 419
+ F + G+ GW++YGG Y+A G GK++G +GA++VD+T + +
Sbjct: 387 NAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANS 446

Query: 420 HMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKT--YH 477
+P D G S R Y++ +E + + GYR+S + + +D ++ Y+
Sbjct: 447 TLPDD-----SQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYN 501

Query: 478 HLNA-----------------GHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQS- 519
+++ + +T Q + Y S S T+W + +
Sbjct: 502 IETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTS-TLYLSGSHQTYWGTSNVDE 560

Query: 520 NYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWG------------ND 567
+ L+ F+ + + S + ++ + +D + +++++P+ +
Sbjct: 561 QFQAGLNTAFEDIN---WTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHA 617

Query: 568 SISYNGT-FNGSQHRNQLGYSGH--SQNGDNWQLHVG-----QDEQGAQADGYYSHQGAL 619
S SY+ + + N G G N ++ + G G+ +++G
Sbjct: 618 SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGY 677

Query: 620 TDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGN 679
+ ++ + + + L + GG+ G L + T +LV G D V N
Sbjct: 678 GNANIGYSHSDD-IKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKV-EN 733

Query: 680 GSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVV 739
+ T+ G AV+ Y + +D N L + + +V + T GAI F
Sbjct: 734 QTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKAR 793

Query: 740 SGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFW--DGA 797
G K++ + PFGA V +E Q G+VAD+G +L+G+ ++V W +
Sbjct: 794 VGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEEN 852

Query: 798 AQCEA--SLPPTFTPELLANALLLPCK 822
A C A LPP +LL L C+
Sbjct: 853 AHCVANYQLPPESQQQLL-TQLSAECR 878


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2480FIMBRIALPAPF349e-05 Escherichia coli: P pili tip fibrillum papF protein...
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein

signature.
Length = 167

Score = 34.3 bits (78), Expect = 9e-05
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 31 PPCTVGGAS---VEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGE 87
PPCT+ V+FG++ V ++ S++C + S L +++ G T +
Sbjct: 32 PPCTINNGQNIVVDFGNINPEHVDNSRGEVTKNISISCPYK-SGSLWIKVTGNTMGVGQN 90

Query: 88 QVLQTSVQGLGIRIQQ-------------AGNKQLVPVGI-TDWLNFTLSGSNGPELEAV 133
VL T++ GI + Q +GN V G+ T FT + +V
Sbjct: 91 NVLATNITHFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFT--------SV 142

Query: 134 PVKEPTTQLAGGDFNASATLVVDY 157
P + + L GGDF +A++ + Y
Sbjct: 143 PFRNGSGILNGGDFRTTASMSMIY 166


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2481FIMBRIALPAPF422e-07 Escherichia coli: P pili tip fibrillum papF protein...
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein

signature.
Length = 167

Score = 41.6 bits (97), Expect = 2e-07
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)

Query: 5 LILTLLITQFAC-AD-NLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIP 62
L ++LL+T A AD + G + PP CTINNG+ + V FG++ +++D N E+
Sbjct: 6 LFISLLLTSVAVLADVQINIRGNVYIPP-CTINNGQNIVVDFGNINPEHVD--NSRGEVT 62

Query: 63 WTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGT------ 116
++ ++ +L ++ T N L TN+ GI L Q + P T
Sbjct: 63 KNISISCPYKSGSLWIKVTG-NTMGVGQNNVLATNITHFGIALYQGKGMSTPLTLGNGSG 121

Query: 117 -----SLTIDES-SLPTLKAVPVKQPGKEPAEGDFEAFATLQVDY 155
+ +D + S T +VP + GDF A++ + Y
Sbjct: 122 NGYRVTAGLDTARSTFTFTSVPFRNGSGILNGGDFRTTASMSMIY 166


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2482INTIMIN310.003 Intimin signature.
		>INTIMIN#Intimin signature.

Length = 939

Score = 30.8 bits (69), Expect = 0.003
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 23 TLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDC 82
L + + +SG A ++ + + + + +D +G ++ L++
Sbjct: 491 ALRSQGGQIQHSGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSN-NVLLTI--- 546

Query: 83 KTALANGVLVAFQGVEDSTLPGLLALEPSSEASGFAIGVE----TVAQQPVSINATEGTA 138
T L+NG +V GV D T A +EA + V+ A PVS N GTA
Sbjct: 547 -TVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTA 605


105SeKA_A2853SeKA_A2860N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A28530132.122123galactitol-1-phosphate 5-dehydrogenase
SeKA_A28541132.256971galactitol utilization operon repressor
SeKA_A28551133.365058conserved hypothetical protein
SeKA_A28560133.328727LppC superfamily
SeKA_A28572152.362703conserved hypothetical protein
SeKA_A28582152.180025DnaA initiator-associating protein DiaA
SeKA_A28591183.087970putative phospholipid-binding domain protein
SeKA_A28601182.196073NAD dependent epimerase/dehydratase family
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2853DHBDHDRGNASE383e-05 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase sig...
		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

signature.
Length = 261

Score = 38.1 bits (88), Expect = 3e-05
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 156 AQGCEGKNVIIVGAGT-IGLLALQCARELGARSVTAIDINPQKLELAKALGATHTCNSRE 214
A+G EGK I GA IG + GA + A+D NP+KLE + ++
Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEA 61

Query: 215 MTADDIQTALSDIQFDQLVLETAGTPQTVSLA 246
AD +A D ++ E V++A
Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVA 93


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2856IGASERPTASE330.003 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 33.5 bits (76), Expect = 0.003
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 8/120 (6%)

Query: 289 QAVEMQPAAAPDAPVEPGVEETQPQMTNGVASPSQASVSDLTDDAPAQSATPVSAPQTPP 348
Q+ +QP A P +P V +PQ + A + + PV+ T
Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTN----TTADTEQPAKETSSNVEQPVTESTTVN 1190

Query: 349 ATASAPADPSAELKIYDTSSQPLD-QVLAQVQQDGASIVVGPLLKNNVEALMKSNTPLNV 407
S +P ++QP + ++ V + N A SN V
Sbjct: 1191 TGNSVVENPENTT---PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2858RTXTOXINA280.028 Gram-negative bacterial RTX toxin determinant A family...
		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

signature.
Length = 1024

Score = 28.0 bits (62), Expect = 0.028
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 42 NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIA-------NDRL 94
K+L GN + A T + IA + V AI+ D+
Sbjct: 277 TKVL--GNVGKGISQYIIAQRAAQGLSTSAAAAGLIA----SAVTLAISPLSFLSIADKF 330

Query: 95 HD----EVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVA 141
E Y+++ + LG+ GD LLA + A++A++T T++A
Sbjct: 331 KRANKIEEYSQRFKKLGYDGDSLLAAFHKETG-----AIDASLTTISTVLA 376


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2860NUCEPIMERASE300.008 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 29.8 bits (67), Expect = 0.008
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 16/55 (29%)

Query: 4 VLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGV--YNP-HDPQLTDA 55
L+TGA G +G H+ + L+ +VG+ N +D L A
Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGH-------------QVVGIDNLNDYYDVSLKQA 44


106SeKA_A2983SeKA_A2991N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A2983-118-4.353983DNA-binding protein Fis
SeKA_A2984-218-2.804154DNA methylase
SeKA_A2985-216-1.973943putative periplasmic protein
SeKA_A2986-216-2.014843ggdef domain/eal domain protein
SeKA_A2987-119-3.444836transcriptional repressor
SeKA_A2988020-2.861509conserved hypothetical protein
SeKA_A2989019-2.054719acriflavine resistance protein E
SeKA_A2990122-3.506128AcrB protein
SeKA_A2992333-6.922336conserved hypothetical protein
SeKA_A2991230-4.342141putative lipoprotein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2983DNABINDNGFIS1573e-54 DNA-binding protein FIS signature.
		>DNABINDNGFIS#DNA-binding protein FIS signature.

Length = 98

Score = 157 bits (399), Expect = 3e-54
Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ
Sbjct: 1 MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQ 60

Query: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98
PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
Sbjct: 61 PLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN 98


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2987HTHTETR1282e-39 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 128 bits (324), Expect = 2e-39
Identities = 82/216 (37%), Positives = 130/216 (60%), Gaps = 3/216 (1%)

Query: 1 MAKKTKADALKTRQHLIETAIAQFALRGVANTTLNDIADAADVTRGAIYWHFENKTQLFN 60
MA+KTK +A +TRQH+++ A+ F+ +GV++T+L +IA AA VTRGAIYWHF++K+ LF+
Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60

Query: 61 EVW-LQQPPLRELIQDRLTGCWNDNPLQDLREKFIAALQYIAAVPRQQALMQILYHKCEF 119
E+W L + + EL + +PL LRE I L+ R++ LM+I++HKCEF
Sbjct: 61 EIWELSESNIGELELEYQAKF-PGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119

Query: 120 HNGM-ISEQAIREKIGFHHQSLLEVLQRCMDKKLISGSLDLDVILIILHGSFSGIVKNWL 178
M + +QA R + + + L+ C++ K++ L II+ G SG+++NWL
Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179

Query: 179 MNPTSYDLYKQAPALVDNVLKMLSPDGSVRQLMPNE 214
P S+DL K+A V +L+M ++R NE
Sbjct: 180 FAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE 215


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2989RTXTOXIND432e-06 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 42.5 bits (100), Expect = 2e-06
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 98 ATYQADYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADA-RQADAAV 156
+ K +L + E+ A + Q + I D RQ +
Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLV----------TQLFKNEILDKLRQTTDNI 311

Query: 157 VAAKAAVESARINLAYTKVTSPISGRIGKSNV-TEGALVTNGQSTELATVQQLDPIYVDV 215
+ + + +P+S ++ + V TEG +VT + T + V + D + V
Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTA 370

Query: 216 TQSSND--FMRLKQSVE 230
+ D F+ + Q+
Sbjct: 371 LVQNKDIGFINVGQNAI 387



Score = 37.1 bits (86), Expect = 1e-04
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 13/127 (10%)

Query: 46 TAPLAVTTELPGR-TSAFRIAEVRPQVSGIVLKRNFTEGSDVEAGQSLYQIDPATYQADY 104
+ + G+ T + R E++P + IV + EG V G L ++ +AD
Sbjct: 77 LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD- 135

Query: 105 DSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVVAAKAAVE 164
K++++ A L RY L E ++ +
Sbjct: 136 ------TLKTQSSLLQARLEQTRYQIL-----SRSIELNKLPELKLPDEPYFQNVSEEEV 184

Query: 165 SARINLA 171
+L
Sbjct: 185 LRLTSLI 191


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2990ACRIFLAVINRP13910.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 1391 bits (3602), Expect = 0.0
Identities = 917/1032 (88%), Positives = 974/1032 (94%)

Query: 1 MANFFIRRPIFAWVLAIILMMAGALAIMQLPVAQYPTIAPPAVSISATYPGADAQTVQDT 60
MANFFIRRPIFAWVLAIILMMAGALAI+QLPVAQYPTIAPPAVS+SA YPGADAQTVQDT
Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

Query: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ
Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121 EVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGVGDVQLFGA 180
EVQQQGISVEKSSSS+LMVAGFVSDNP TTQDDISDYVASN+KD++SRLNGVGDVQLFGA
Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 181 QYAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
QYAMRIWLDA+LLNKY+LTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR
Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240

Query: 241 KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGIKLATGANAL 300
K+PEEFGKVTLRVN+DGSVV LKDVAR+ELGGENYNV+ARINGKPA+GLGIKLATGANAL
Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300

Query: 301 DTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQ 360
DTA AIKAKLAELQPFFPQGMKV+YPYDTTPFV++SIHEVVKTLFEAI+LVFLVMYLFLQ
Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 361 NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
N+RATLIPTIAVPVVLLGTFA+LAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421 MEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
MED L P+EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL
Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481 SVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTRFDHSVNHYTNSVSGIVRNTGRY 540
SVLVALILTPALCATLLKPVSAEHHE K GFFGWFNT FDHSVNHYTNSV I+ +TGRY
Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540

Query: 541 LIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLPSGATQERTQKVLDQVTHYYLNN 600
L+IY LIV GM VLFLRLP+SFLPEEDQGVFLTMIQLP+GATQERTQKVLDQVT YYL N
Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600

Query: 601 EKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNGEENSVEAVIARATRAFSQIRDG 660
EKANVESVFTVNGFSFSGQ QN+GMAFVSLKPWEERNG+ENS EAVI RA +IRDG
Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660

Query: 661 LVFPFNMPAIVELGTATGFDFELIDQGGLGHDALTKARNQLLGMVAKHPDLLVRVRPNGL 720
V PFNMPAIVELGTATGFDFELIDQ GLGHDALT+ARNQLLGM A+HP LV VRPNGL
Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720

Query: 721 EDTPQFKLDVDQEKAQALGVSLSDINETISAALGGYYVNDFIDRGRVKKVYVQADAQFRM 780
EDT QFKL+VDQEKAQALGVSLSDIN+TIS ALGG YVNDFIDRGRVKK+YVQADA+FRM
Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780

Query: 781 LPGDINNLYVRSANGEMVPFSTFSSARWIYGSPRLERYNGMPSMELLGEAAPGRSTGEAM 840
LP D++ LYVRSANGEMVPFS F+++ W+YGSPRLERYNG+PSME+ GEAAPG S+G+AM
Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840

Query: 841 SLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSV 900
+LMENLAS+LP GIGYDWTGMSYQERLSGNQAPAL AIS +VVFLCLAALYESWSIP SV
Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900

Query: 901 MLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGRGLI 960
MLVVPLG+VG LLAA+L NDVYF VGLLTTIGLSAKNAILIVEFAKDLMEKEG+G++
Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960

Query: 961 EATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAIFF 1020
EATL A RMRLRPILMTSLAFILGV+PL IS GAGSGAQNAVG GVMGGM++ATLLAIFF
Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020

Query: 1021 VPVFFVVVKRRF 1032
VPVFFVV++R F
Sbjct: 1021 VPVFFVVIRRCF 1032


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A2991adhesinb290.001 Adhesin B signature.
		>adhesinb#Adhesin B signature.

Length = 310

Score = 29.0 bits (65), Expect = 0.001
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 1 MKR---LIPVALLTTLLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGG 57
MK+ L+ + L LA C+ + +V TN+ + T++ IAG
Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKN-------IAGD 53

Query: 58 AAAVAGLT 65
+ +
Sbjct: 54 KINLHSIV 61


107SeKA_A3045SeKA_A3050N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3045447-2.328891peptidase, A24 (type IV prepilin peptidase)
SeKA_A3046653-2.363289bacterioferritin
SeKA_A3047756-1.474381bacterioferritin-associated ferredoxin
SeKA_A3049754-0.949485translation elongation factor Tu
SeKA_A3050543-0.893422translation elongation factor G
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3045PREPILNPTASE1405e-44 Type IV prepilin cysteine protease (C20) family sig...
		>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family

signature.
Length = 290

Score = 140 bits (355), Expect = 5e-44
Identities = 59/143 (41%), Positives = 86/143 (60%), Gaps = 2/143 (1%)

Query: 4 ALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYHQICLPERLSDALWGAIAGY 63
L L+ + L D LLPD+ T PLLWGGLL++ + L DA+ GA+AGY
Sbjct: 134 TLAALLLT-WVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGY 192

Query: 64 GGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETLPLLVFLAAMLACGGFGVALLV 123
+YW ++L KEG+GYGD K LAALGAW W+ LP+++ L++++ G+ L++
Sbjct: 193 LVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLV-GAFMGIGLIL 251

Query: 124 RGKSALINPLPFGPWLAVAGFIT 146
P+PFGP+LA+AG+I
Sbjct: 252 LRNHHQSKPIPFGPYLAIAGWIA 274


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3046HELNAPAPROT371e-05 Helicobacter neutrophil-activating protein A family ...
		>HELNAPAPROT#Helicobacter neutrophil-activating protein A family

signature.
Length = 153

Score = 36.8 bits (85), Expect = 1e-05
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 44 EYHESIDEMKHADKYIERILFLEGIPN--LQDLGKL------GIGEDVEEMLRSDLRLEL 95
E ++ E D ER+L + G P +++ + G EM+++ +
Sbjct: 52 ELYDHAAE--TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYK 109

Query: 96 EGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETEL 138
+ + + + I A+ D + D+ + ++ + E + L + L
Sbjct: 110 QISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3049TCRTETOQM803e-18 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 79.5 bits (196), Expect = 3e-18
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 13/198 (6%)

Query: 13 VNVGTIGHVDHGKTTLTAAI------TTVLAKTYGGAARAFDQIDNAPEEKARGITINTS 66
+N+G + HVD GKTTLT ++ T L G R DN E+ RGITI T
Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT----DNTLLERQRGITIQTG 59

Query: 67 HVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV 126
+ +D PGH D++ + + +DGAIL+++A DG QTR R++
Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119

Query: 127 GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE 186
G+P I F+NK D + L V +++E LS + + +W+
Sbjct: 120 GIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176

Query: 187 AKIIELAGFLDSYIPEPE 204
I L+ Y+
Sbjct: 177 TVIEGNDDLLEKYMSGKS 194


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3050TCRTETOQM6160.0 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 616 bits (1591), Expect = 0.0
Identities = 178/698 (25%), Positives = 305/698 (43%), Gaps = 81/698 (11%)

Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68
+ NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T
Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61

Query: 69 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128
+ W ++NIIDTPGH+DF EV RS+ VLDGA+++ A GVQ Q+ ++
Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114

Query: 129 QANKYKVPRIAFVNKMDRMGANFLKVVGQIKTRLGANPVPLQLAIGAEEGFTGVVDLVKM 188
K +P I F+NK+D+ G + V IK +L A V Q V M
Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164

Query: 189 KAINWNDADQGVTFEYEDIPADMQDLANEWHQNLIESAAEASEELMEKYLGGEELTEEEI 248
N+ +++Q ++ E +++L+EKY+ G+ L E+
Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYMSGKSLEALEL 200

Query: 249 KQALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAE 308
+Q R N + V GSA N G+ +++ + + S
Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243

Query: 309 RHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKTARERFGRIVQMHA 368
FKI L + R+YSGV++ D+V S K + + +
Sbjct: 244 ---RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEK-EKIKITEMYTSIN 299

Query: 369 NKREEIKEVRAGDIAAAIG----LKDVTTGDTLCDPENPIILERMEFPEPVISIAVEPKT 424
+ +I + +G+I L V GDT P+ ER+E P P++ VEP
Sbjct: 300 GELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR----ERIENPLPLLQTTVEPSK 354

Query: 425 KADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVG 484
+E + AL ++ DP R + D +++ I++ +G++ +++ ++ +++VE +
Sbjct: 355 PQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIK 414

Query: 485 KPQVAYREAIRAKVTDIEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGV 544
+P V Y E K E + + + + + PL GS G ++ + + G
Sbjct: 415 EPTVIYMERPLKKA---EYTIHIEVPPNPFWASIGLSVSPLPLGS---GMQYESSVSLGY 468

Query: 545 IPGEYIPAVDKGIQEQLKSGPLAGYPVVDLGVRLHFGSYHDVDSSELAFKLAASIAFKEG 604
+ + AV +GI+ + G L G+ V D + +G Y+ S+ F++ A I ++
Sbjct: 469 LNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQV 527

Query: 605 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMF 664
KKA LLEP + ++ P+E D + + + + V + E+P +
Sbjct: 528 LKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQ 587

Query: 665 GYATQLRSLTKGRASYTMEFLKYDDAPNNVAQAVIEAR 702
Y + L T GR+ E Y + V + R
Sbjct: 588 EYRSDLTFFTNGRSVCLTELKGYHVT---TGEPVCQPR 622


108SeKA_A3056SeKA_A3068N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3056-113-0.562389conserved hypothetical protein
SeKA_A3057-1130.776441fkbp-type peptidyl-prolyl cis-trans isomerase
SeKA_A30581132.440553conserved domain protein
SeKA_A30591142.579374FKBP-type peptidyl-prolyl cis-trans isomerase
SeKA_A30600152.073918conserved hypothetical protein
SeKA_A30610162.442063glutathione-regulated potassium-efflux system
SeKA_A30621182.360475glutathione-regulated potassium-efflux system
SeKA_A30630192.209202ABC transporter, ATP-binding protein
SeKA_A3064-2150.511234putative ATPase component of ABC transporter
SeKA_A3065-115-0.188740protein YdhR
SeKA_A3066-1130.926830alpha/beta hydrolase fold
SeKA_A3067-1121.060134conserved hypothetical protein
SeKA_A3068-1121.348098phosphoribulokinase/uridine kinase family
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3056ACRIFLAVINRP290.022 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 28.7 bits (64), Expect = 0.022
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 160 ASSVEDLVTQTLEFTIEEVNADRNV-SNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI 218
A +V+D VTQ +E + ++ + S + + + L + D A QV ++L +
Sbjct: 54 AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQL 113

Query: 219 SK 220
+
Sbjct: 114 AT 115


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3057INFPOTNTIATR1282e-38 Macrophage infectivity potentiator signature.
		>INFPOTNTIATR#Macrophage infectivity potentiator signature.

Length = 233

Score = 128 bits (323), Expect = 2e-38
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 28 AAKPAATADSKAAFKNDDQKAAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAF 87
A A A + D K +Y++GA LG K + GI ++ D L G+QD
Sbjct: 14 AMSTAMAATDATSLTTDKDKLSYSIGADLG-------KNFKNQGIDINPDVLAKGMQDGM 66

Query: 88 A-DKSKLSDQEIEQTLQTFEARVKSAAQAKMEKDAADNEAKGKTFRDAFAKEKGVKTSST 146
+ + L++++++ L F+ + + A+ K A +N+AKG F A + G+ +
Sbjct: 67 SGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPS 126

Query: 147 GLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGL 206
GL YK+ GTG P SDTV V Y GTLIDG FD++ G+P +F++ VIPGWTE L
Sbjct: 127 GLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEAL 186

Query: 207 KNIKKGGKIKLVIPPALAYGKTGVPG-IPANSTLVFDVELLDIKPA 251
+ + G ++ +P LAYG V G I N TL+F + L+ +K A
Sbjct: 187 QLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVKKA 232


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3062ISCHRISMTASE280.025 Isochorismatase signature.
		>ISCHRISMTASE#Isochorismatase signature.

Length = 312

Score = 27.7 bits (61), Expect = 0.025
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 22/138 (15%)

Query: 11 YAHPESQDSVANRVLLKPAIQHNNVTVHDLYARYPDFFID--TPYEQ-----ALLREHDV 63
Y P + D N+V P + +HD+ + D F +P + L+ V
Sbjct: 9 YQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCV 68

Query: 64 IVFQH--PLYTYSCPALLKEWLDRVLSRGFASGPGGNQLVGKYWRSVITTGEPESA---- 117
Q P+ + P DR L F GPG N G Y +IT PE
Sbjct: 69 ---QLGIPVVYTAQPGSQNP-DDRALLTDFW-GPGLNS--GPYEEKIITELAPEDDDLVL 121

Query: 118 --YRYDALNRYPMSDVLR 133
+RY A R + +++R
Sbjct: 122 TKWRYSAFKRTNLLEMMR 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3063PYOCINKILLER310.021 Pyocin S killer protein signature.
		>PYOCINKILLER#Pyocin S killer protein signature.

Length = 617

Score = 30.5 bits (68), Expect = 0.021
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 522 VQKQENQADDAPKENNANSAQSRKDQKRREAELRTLT---QPLRKEITRLEKEMEKLNAQ 578
+ E + A +E N N ++ RE E T + + I+ L+ M L A
Sbjct: 151 TRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAA 210

Query: 579 LA----QAEEKLGDSSLYDPSRKAE 599
A A K + + + RKAE
Sbjct: 211 KASIEAAAANKAREQAAAEAKRKAE 235


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3067FLGFLIH250.024 Flagellar assembly protein FliH signature.
		>FLGFLIH#Flagellar assembly protein FliH signature.

Length = 228

Score = 25.1 bits (54), Expect = 0.024
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 3 IPWQGLAPDTLDNLIESFV---LREGTDYGEHERSLEQKVADVKRQ 45
+PW+ PD L FV E T E E SLEQ++A ++ Q
Sbjct: 5 LPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ 50


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3068PF07299352e-04 Fibronectin-binding protein (FBP)
		>PF07299#Fibronectin-binding protein (FBP)

Length = 219

Score = 34.8 bits (80), Expect = 2e-04
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 71 PEANDFSQLEHTFIEYGQTGKGQSRKYLHTYDEAVPWNQVPGTFTP 116
P+ + E ++ KG SRK++ ++ + + GTF
Sbjct: 112 PDMEELDMKELSY--LSWIDKGSSRKFIIAKNDKNKFVGLQGTFQS 155


109SeKA_A3158SeKA_A3164N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3158-3142.583417gamma-glutamyltransferase
SeKA_A3159-4152.068010putative outer membrane protein
SeKA_A3160-3151.953281glycerophosphoryl diester phosphodiesterase
SeKA_A3161-2141.070351sn-glycerol-3-phosphate import ATP-binding
SeKA_A3162-2171.043119sn-glycerol 3-phosphate transport protein
SeKA_A3163-2161.763752sn-glycerol-3-phosphate transport system
SeKA_A3164-2202.582061glycerol-3-phosphate-binding periplasmic protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3158NAFLGMOTY320.004 Sodium-type flagellar protein MotY precursor signature.
		>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature.

Length = 293

Score = 32.4 bits (73), Expect = 0.004
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 17/82 (20%)

Query: 275 RTPISGDYRGYQVFSMPPPSSGGIHIVQILNI--LENFDMKKYGF-GSADAMQIMAEAEK 331
R P+ G+ R + SMPPP G H +I N+ + FD G+ G A I++E EK
Sbjct: 77 RRPM-GETRNVSLISMPPPWRPGEHADRITNLKFFKQFD----GYVGGQTAWGILSELEK 131

Query: 332 YAYADRSEYLGDPDFVKVPWQA 353
Y P F WQ+
Sbjct: 132 GRY---------PTFSYQDWQS 144


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3160PF04619280.029 Dr-family adhesin
		>PF04619#Dr-family adhesin

Length = 160

Score = 27.6 bits (61), Expect = 0.029
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 29 VGARYGHTMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQD----LLRVDAGGW 84
+G ++ D + G+ FL+ D+N ++ W + D G W
Sbjct: 70 LGCDARQVALKADTDNFEQGKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSW 129


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3161PF05272290.041 Virulence-associated E family protein
		>PF05272#Virulence-associated E family protein

Length = 892

Score = 28.9 bits (64), Expect = 0.041
Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 33 IVMVGPSGCGKSTLLRMVAGLERVTSGDI 61
+V+ G G GKSTL+ + GL+ +
Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHF 627


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3164MALTOSEBP431e-06 Maltose binding protein signature.
		>MALTOSEBP#Maltose binding protein signature.

Length = 396

Score = 43.2 bits (101), Expect = 1e-06
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 133 SGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQELADYTAKLRAAGMKCGYASGW 192
+G L++ P L YNKD L P PPKTW+E+ +L+A G +
Sbjct: 126 NGKLIAYPIAVEALSLIYNKD------LLP-NPPKTWEEIPALDKELKAKGKSALMFNLQ 178

Query: 193 QGWIQLENFSAWNGLPFASKNNGFDGTDAVLEF--NKPEQVKHIALLEEMNKKGDFSYVG 250
+ + +A G F +N +D D ++ K + L++ + D Y
Sbjct: 179 EPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDY-- 236

Query: 251 RKDESTEKFYNGDCAMTTASSGSLANIRQYAKFNYGVGMMPYDADIKGAPQNAIIG 306
+ F G+ AMT + +NI +K NYGV ++P KG P +G
Sbjct: 237 --SIAEAAFNKGETAMTINGPWAWSNIDT-SKVNYGVTVLP---TFKGQPSKPFVG 286


110SeKA_A3182SeKA_A3198N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A31822143.660942putative inner membrane protein
SeKA_A31831143.448230putative membrane protein
SeKA_A31841143.795640cadmium-translocating P-type ATPase
SeKA_A3185-1131.297144methyl-accepting chemotaxis protein I
SeKA_A31861151.314560conserved hypothetical protein
SeKA_A31870141.566488putative membrane protein
SeKA_A31880142.018603DcrB protein
SeKA_A3189-2143.238694protein YhhS
SeKA_A3190-2133.434503inner membrane protein YhhT
SeKA_A3191-1154.1778664'-phosphopantetheinyl transferase AcpT
SeKA_A3192-2164.016547nickel-responsive transcriptional regulator
SeKA_A3193-3143.484475ABC transporter, ATP-binding protein
SeKA_A3194-3143.660036ABC transporter permease and ATP-binding
SeKA_A3195-1122.588012auxiliary transport protein, membrane fusion
SeKA_A3196-2130.134199hypothetical protein
SeKA_A3197-2131.292713conserved hypothetical protein
SeKA_A3198-2171.334251probable low-affinity inorganic phosphate
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3182SHIGARICIN270.026 Ribosome inactivating protein family signature.
		>SHIGARICIN#Ribosome inactivating protein family signature.

Length = 289

Score = 26.7 bits (59), Expect = 0.026
Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 7 FFIIIIALIVVAASFRFVQQRREKAANEA 35
+++I AA ++F++Q+ K ++
Sbjct: 173 ALMVLIQSTSEAARYKFIEQQIGKRVDKT 201


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3184ACRIFLAVINRP300.037 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 30.2 bits (68), Expect = 0.037
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 336 AEERRAPIERFIDRFSRIYTPVIMVIALLVTLIPPLMFDGGWQEWIYKGLTLLLIGCPCA 395
E++ P E S+I ++ + +L + P+ F GG IY+ ++ ++ A
Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVS---A 477

Query: 396 LVISTPAAITSGLAAAAR 413
+ +S A+ A A
Sbjct: 478 MALSVLVALILTPALCAT 495


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3186PF012061047e-33 SirA family protein
		>PF01206#SirA family protein

Length = 76

Score = 104 bits (260), Expect = 7e-33
Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 39 DHTLDALGLRCPEPVMMVRKTVRNMQTGETLLIIADDPATTRDIPGFCTFMEHDLLAQET 98
D +LDA GL CP P++ +KT+ M GE L ++A DP + +D F H+LL Q+
Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64

Query: 99 EGLPYRYLLRKA 110
E Y + L++A
Sbjct: 65 EDGTYHFRLKRA 76


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3189TCRTETA479e-08 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 46.7 bits (111), Expect = 9e-08
Identities = 75/403 (18%), Positives = 138/403 (34%), Gaps = 42/403 (10%)

Query: 13 LRLNLRIVSIVMFNFASYLTIGLPLAVLPGYVHD--AMGFSAFWAGLIISLQYFATLLSR 70
++ N ++ I+ + IGL + VLPG + D G++++L
Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60

Query: 71 PHAGRYADVLGPKKIVVFGLCGCFLSGLGYLLADIASAWPLISLLLLGLGRVILGI-GQS 129
P G +D G + +++ L G + + Y + A L +L +GR++ GI G +
Sbjct: 61 PVLGALSDRFGRRPVLLVSLAG---AAVDYAIMATAPF-----LWVLYIGRIVAGITGAT 112

Query: 130 FAGTGSTLWGVGVVGSLHIGRVISWNGIVTYGAMAMGAPLGVLCYAWGGLQGLALTVMGV 189
A G+ + + R + M G LG L G
Sbjct: 113 GAVAGAYIADITDGDER--ARHFGFMSACFGFGMVAGPVLGGLM----GGFSPHAPFFAA 166

Query: 190 ALLAILLAL----------PRPSVKANKGKPLPFRAVLGRVWLYGMALALA-----SAGF 234
A L L L + P + + +A +A
Sbjct: 167 AALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVG 226

Query: 235 GVIATFITLFYDAK-GWDGAAFVLTLFSVAFVGT---RLLFPNGINRLGGLNVAMICFGV 290
V A +F + + WD ++L + + + ++ RLG M+
Sbjct: 227 QVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286

Query: 291 EIIGLLLVGTAAMPWMAKIGVLLTGMGFSLVFPALGVVAVKAVPPQNQGAALATYTVFMD 350
+ G +L+ A WMA ++L + PAL + + V + QG +
Sbjct: 287 DGTGYILLAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSRQVDEERQGQLQGSLAALTS 345

Query: 351 MSLGVTGPLAGLVMTWAGVPV----IYLAAAGLVTMALLLTWR 389
++ + GPL + A + ++A A L + L R
Sbjct: 346 LT-SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3191ENTSNTHTASED336e-04 Enterobactin synthetase component D signature.
		>ENTSNTHTASED#Enterobactin synthetase component D signature.

Length = 234

Score = 32.7 bits (74), Expect = 6e-04
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 30 RRASWLAGRVLLSRALSPL---PEMVYGEQGKPAFSAGTPLWFNLSHSGDTIALLLSDEG 86
R+A LAGR+ AL + G++ +P + G L+ ++SH T ++S +
Sbjct: 46 RKAEHLAGRIAAVHALREVGVRTVPGMGDKRQPLWPDG--LFGSISHCATTALAVISRQ- 102

Query: 87 EVGCDIEVIRPRDNWRSLANAVFSLGEHAEMEA 119
+G DIE I + LA ++ E ++A
Sbjct: 103 RIGIDIEKIMSQHTATELAPSIIDSDERQILQA 135


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3193ABC2TRNSPORT482e-08 ABC-2 type transport system membrane protein signat...
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein

signature.
Length = 262

Score = 48.0 bits (114), Expect = 2e-08
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 7/171 (4%)

Query: 200 REREHGTVEHLLVMPVTPFEIMMAKV-WSMGLVVLVVSGLSLMLMVKGVLGVPIEGSIPL 258
R T E +L + +I++ ++ W+ L +G + +V LG + L
Sbjct: 93 RMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG---IGVVAAALGY-TQWLSLL 148

Query: 259 FMLGV-ALSLFATTSIGIFMGTIARSMPQLGLLMILVLLPLQMLSGGSTPRESMPQAVQD 317
+ L V AL+ A S+G+ + +A S LV+ P+ LSG P + +P Q
Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQT 208

Query: 318 IMLTMPTTHFVSLAQAILYRGAGLSIVWPQFLTLLAIGGVFFL-IALLRFR 367
+P +H + L + I+ + + + I FFL ALLR R
Sbjct: 209 AARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRRR 259


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3195RTXTOXIND792e-18 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 79.5 bits (196), Expect = 2e-18
Identities = 70/413 (16%), Positives = 137/413 (33%), Gaps = 82/413 (19%)

Query: 3 KMKRHLVWWGAGILVAVAAIAWWMLRPAGIPEGFAASNGRI--EATEVDIATKIAGRIDT 60
+ LV + + V A +L E A +NG++ +I +
Sbjct: 54 SRRPRLVAY-FIMGFLVIAFILSVLGQV---EIVATANGKLTHSGRSKEIKPIENSIVKE 109

Query: 61 ILVSEGQFVRQGEVLAKMDTRV----------------LQEQRLEAI------------- 91
I+V EG+ VR+G+VL K+ L++ R + +
Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169

Query: 92 -----------------------AQIKEAESAVAAARALLEQRQSEMRAAQSVVKQREAE 128
Q ++ L+++++E + + + E
Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229

Query: 129 LDSVSKRHVRSRSLSQRGAVSVQQLDDDRAAAESARAALETAKAQVSAAKAAIEAARTSI 188
R SL + A++ + + A L K+Q+ ++ I +A+
Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289

Query: 189 IQ-------------AQTRVEAAQATERRIVADID--DSELKAPRDGRV-QYRVAEPGEV 232
QT T + S ++AP +V Q +V G V
Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349

Query: 233 LSAGGRVLNMVDLSDVY-MTFFLPTEQVGLLKIGGEARLVLDAAPDLRIPATISFVASVA 291
++ ++ +V D +T + + +G + +G A + ++A P R V V
Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYG---YLVGKVK 406

Query: 292 QFTPKTVETHDERLKLMFRVKARIPPELLRQHLEYV--KTGLPGMAWVRLDER 342
+E D+RL L+F V I L + + +G+ A ++ R
Sbjct: 407 NINLDAIE--DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3198TYPE3IMSPROT300.022 Type III secretion system inner membrane S protein ...
		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

family signature.
Length = 354

Score = 30.1 bits (68), Expect = 0.022
Identities = 23/194 (11%), Positives = 57/194 (29%), Gaps = 40/194 (20%)

Query: 12 TGLLLLLALAFVLFYEAINGFHDTANAVATVIY------TRAMRSQLAVVMAAVFNFFGV 65
L++AL+ +L + F + + ++A+ + V+ F
Sbjct: 30 VSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFFYLCFP 89

Query: 66 LLGGLSVAYAIVHML-------------------PTDLLLNMGSAHGLAMVFSMLLAAII 106
LL ++ H++ P + + S L +L ++
Sbjct: 90 LLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVL 149

Query: 107 WNLGTWYFGLPASSSHTLIGAIIGIGLTNAMMTGTSVVDALNIPKVINIFGSLIISPIVG 166
++ W + ++ + T + T ++ + L++ VG
Sbjct: 150 LSILIWIIIKG------NLVTLLQLP-TCGIECITPLLGQI--------LRQLMVICTVG 194

Query: 167 LVFAGGLIFLLRRY 180
V + Y
Sbjct: 195 FVVISIADYAFEYY 208


111SeKA_A3319SeKA_A3324N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3319-212-0.283447transcriptional regulator, LacI family
SeKA_A3318-214-0.789261hypothetical protein
SeKA_A3320-212-0.079201mandelate racemase/muconate lactonizing enzyme
SeKA_A3321-213-0.784381probable glucarate transporter
SeKA_A33220141.012084serine O-acetyltransferase
SeKA_A33232211.032795NAD-dependent glycerol-3-phosphate
SeKA_A33242191.685615protein-export chaperone SecB
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3319PF06057290.015 Type IV secretory pathway VirJ component
		>PF06057#Type IV secretory pathway VirJ component

Length = 243

Score = 29.4 bits (66), Expect = 0.015
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 108 DELARRGYHILLCVAGYTEQTEAELVATLLSRRPDGVVLTGIHH----TIELKKVILNAA 163
E+ ++ +LC+ G + L + + L+G H ++ K+I
Sbjct: 181 PEVNKQTTVPMLCLYGKEDDAPLHLCPEVKQPNVTVMELSGGHSFDDDYDKVVKLIKGWL 240

Query: 164 IP 165
P
Sbjct: 241 KP 242


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3321TCRTETA401e-05 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 40.2 bits (94), Expect = 1e-05
Identities = 68/410 (16%), Positives = 129/410 (31%), Gaps = 65/410 (15%)

Query: 35 VAPIMSKELGFDPEA---MGLAFSSFGIAYVIMQLPGGWLLDRYGSRLVYGCALIGWSLV 91
V P + ++L + G+ + + + G L DR+G R V +L G ++
Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV- 85

Query: 92 TMFQGTIYLYGSPLIVLVILRLLMGAIEAPAFPANSRLS--------VQWFPNNERGFVT 143
I L VL I R++ G A A + ++ + F GF++
Sbjct: 86 ---DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHF-----GFMS 137

Query: 144 SVYQAAQYISLGIITPLMTIILHNLSWHFVFYYIGAIGV---MLGIFWLMKVKDPMHHPK 200
+ + + P++ ++ S H F+ A+ + G F L + P
Sbjct: 138 ACFGFGM-----VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPL 192

Query: 201 VNQAEIDYIRSGGGEPSLGCKKEPQKITFAQIKTVCVNRMMIGVYIGQFCVTSITWFFLT 260
+ A + ++ + F + +
Sbjct: 193 ---------------------RREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAA 231

Query: 261 WFPTYLYQAKGMSILKVGFVASIPAIAGFIGGLLGGVFSDWLLKRGYSLTVARKLPVICG 320
+ + +G A G + L + + + R ++ G
Sbjct: 232 LWVIFGEDRFHWDATTIGISL---AAFGILHSLAQAMITGPVAARLGERRA-----LMLG 283

Query: 321 MLLSCV--IVIANYTSSEFVVIAAMSLAFFAKGFGNLGWCVLSDTSPKEVLGIAGGVFNM 378
M+ I++A T + LA G L +LS +E G G
Sbjct: 284 MIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQ-AMLSRQVDEERQGQLQGSLAA 342

Query: 379 CGNMASIVTPLVIGVILANTQSFDFAILYVGSMGLIGLISYLFIVGPLDR 428
++ SIV PL+ I A + + + G + G YL + L R
Sbjct: 343 LTSLTSIVGPLLFTAIYAASITT-----WNGWAWIAGAALYLLCLPALRR 387


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3323NUCEPIMERASE290.028 Nucleotide sugar epimerase signature.
		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

Length = 334

Score = 29.0 bits (65), Expect = 0.028
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 13/87 (14%)

Query: 8 MTVI---GAGSYGTALAITLARNGHQVVLWGHD---PKHIATLEHDRCNVAFLPDVPFPD 61
M + AG G ++ L GHQVV G D + +L+ R + P F
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVV--GIDNLNDYYDVSLKQARLELLAQPGFQF-- 56

Query: 62 TLHLESDLATALAASRNILVVVPSHVF 88
+ DLA + VF
Sbjct: 57 ---HKIDLADREGMTDLFASGHFERVF 80


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3324SECBCHAPRONE2342e-82 Bacterial protein-transport SecB chaperone protein ...
		>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein

signature.
Length = 170

Score = 234 bits (598), Expect = 2e-82
Identities = 91/153 (59%), Positives = 118/153 (77%), Gaps = 4/153 (2%)

Query: 3 EQNNTEMAFQIQRIYTKDVSFEAPNAPHVFQKDWQPEVKLDLDTASSQLADDVYEVVLRV 62
Q + QIQRIY KDVSFEAPN PH+FQ+DW+P++ DL T + Q+ DD+YEV L +
Sbjct: 12 TQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNI 71

Query: 63 TVTASLGEE--TAFLCEVQQAGIFSISGIEGTQMAHCLGAYCPNILFPYARECITSLVSR 120
+V ++ AF+CEV+QAG+F+ISG+E QMAHCL + CPN+LFPYARE ++SLV+R
Sbjct: 72 SVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNR 131

Query: 121 GTFPQLNLAPVNFDALFMNYL--QQQAGEGTEE 151
GTFP LNL+PVNFDALFM+YL Q+QA + TEE
Sbjct: 132 GTFPALNLSPVNFDALFMDYLQRQEQAEQTTEE 164


112SeKA_A3413SeKA_A3418N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3413-1162.802904putative GntR-family transcriptional regulator
SeKA_A3414-1204.692392conserved hypothetical protein
SeKA_A3415-2203.971809hexose phosphate transport protein
SeKA_A3416-1163.304306regulatory protein UhpC
SeKA_A3417-2131.967198sensor histidine kinase UhpB
SeKA_A3418-212-0.186240transcriptional regulatory protein UhpA
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3413CABNDNGRPT280.030 NodO calcium binding signature.
		>CABNDNGRPT#NodO calcium binding signature.

Length = 479

Score = 28.4 bits (63), Expect = 0.030
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 51 TVKKAVDQLVREGVLVQVQGKGTFVKKENVAYPLGEGLLSFAEALASQKINFTTSVITSR 110
++ +A Q+ RE V G F K N+ + F ++++S T V +
Sbjct: 49 SIDQAAAQITREN--VSWNGTNVFGKSANLTF-------KFLQSVSSIPSGDTGFVKFNA 99

Query: 111 LEPANRFVA 119
+ ++
Sbjct: 100 EQIEQAKLS 108


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3415TCRTETB363e-04 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 36.0 bits (83), Expect = 3e-04
Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 16/168 (9%)

Query: 49 FNIAQNDMISTYGLSMTELGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAIC 108
N++ D+ + + + F +T+ +G + +D K+ L F +I++
Sbjct: 33 LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN--- 89

Query: 109 MLGFSASMGAGSTSLFLMIAFYALSGFFQSTGGSCSYSTI----TKWTPRRKRGTFLGFW 164
F + +G S F ++ + F Q G + + + ++ P+ RG G
Sbjct: 90 --CFGSVIGFVGHSFFSLLIM---ARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144

Query: 165 NISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRF 212
+G + A+Y+ + + + P +I +I ++
Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSY---LLLIP-MITIITVPFLMKL 188


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3416TCRTETB416e-06 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 41.0 bits (96), Expect = 6e-06
Identities = 72/408 (17%), Positives = 138/408 (33%), Gaps = 60/408 (14%)

Query: 29 RHILITIWLGYALFY--FTRKSFNAAAPEILASGILSRSDIGLLATLFYITYGVSKFVSG 86
RH I IWL F+ N + P+I + + T F +T+ + V G
Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70

Query: 87 IVSDRSNARYFMGIGLIATGVVNILFGFSTSLWAFALLWALNAFFQGFGS---PVCARLL 143
+SD+ + + G+I +++ S F L + F QG G+ P ++
Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHS---FFSLLIMARFIQGAGAAAFPALVMVV 127

Query: 144 TAWY-SRTERGGWWALWNTAHNVGGALIPLVMAAVALHYGWRVGMMVAGLLAIGVGMVLC 202
A Y + RG + L + +G + P + +A + W +++ + I V
Sbjct: 128 VARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITV----- 182

Query: 203 WRLRDRPQAIGLPPVGDWRHDALEVAQQQEGAGLSRKEILAKYVLLNPYIWLLSLCYVLV 262
P + L ++ G L I+ + Y + VL
Sbjct: 183 ------PFLMKLLKKEVRIKGHFDIK----GIILMSVGIVFFMLFTTSYSISFLIVSVLS 232

Query: 263 YVV-----RAAINDWGNLYMSETLGVDLVTANTAVSMFELGGFI-----------GALVA 306
+++ R + + + + + + + + + GF+ A
Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292

Query: 307 GWGSDKLFNG----------------NRGPMNLIFAAGILLSVGSL---WLMPFASYVMQ 347
GS +F G RGP+ ++ LSV L +L+ S+ M
Sbjct: 293 EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMT 352

Query: 348 AACFFTTGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGASL 395
F G F + +I + ++ AGA + ++L
Sbjct: 353 IIIVFVLGGLSF-TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3417PF06580393e-05 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 38.7 bits (90), Expect = 3e-05
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 11/142 (7%)

Query: 365 LRPRQLDDLTLAQAIRSLLREMELESRGIVSHLDWRIDETALSESQRVTLFRVCQEGLNN 424
LR ++LA + + ++L S L + +V + Q + N
Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPM-LVQTLVEN 266

Query: 425 IVKHA-----NASAVTLQGWQQDERLMLVIEDDGSGLPPGSHQ-QGFGLTGMRERVSALG 478
+KH + L+G + + + L +E+ GS + + G GL +RER+ L
Sbjct: 267 GIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLY 326

Query: 479 G---TLTISCTHG-TRVSVSLP 496
G + +S G V +P
Sbjct: 327 GTEAQIKLSEKQGKVNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3418HTHFIS612e-13 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 61.0 bits (148), Expect = 2e-13
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDIS 61
T+ + DD +R+ Q L V + + + + D+ MPD +
Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61

Query: 62 GLELLSQLPK---GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHT 114
+LL ++ K + +++S ++ +A GA +L K ELI +
Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117


113SeKA_A3632SeKA_A3637N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A36320201.432702conserved hypothetical protein
SeKA_A3633-1180.833928oxygen-independent coproporphyrinogen III
SeKA_A3634-1160.719550nitrogen regulation protein NR
SeKA_A3635-114-0.840062nitrogen regulation protein NR
SeKA_A3636014-2.344983glutamine synthetase
SeKA_A3637-212-3.502481GTP-binding protein TypA
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3632SECA280.018 SecA protein signature.
		>SECA#SecA protein signature.

Length = 901

Score = 28.3 bits (63), Expect = 0.018
Identities = 14/74 (18%), Positives = 27/74 (36%)

Query: 11 KAFGKQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQQKDPRIGSKT 70
K + + EE+ + + R+ + +SA+ Q + ++G
Sbjct: 824 STLSKVQVRMPEEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRND 883

Query: 71 PVPLGVTEKVTQQH 84
P P G +K Q H
Sbjct: 884 PCPCGSGKKYKQCH 897


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3634HTHFIS5970.0 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 597 bits (1540), Expect = 0.0
Identities = 204/478 (42%), Positives = 299/478 (62%), Gaps = 11/478 (2%)

Query: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGM 60
M + V DDD++IR VL +AL+ AG N + +A+ D++++D+ MP
Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60

Query: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
+ LL +IK+ P LPV++M+A + A+ A ++GA+DYLPKPFD+ E + ++ RA++
Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120

Query: 121 HYQEQQQPRNIEVNGPTTDMIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180
+ + + ++G + AMQ+++R++ RL ++ ++++I GESGTGKELVA A
Sbjct: 121 EPKRRPSKLEDDSQDGM-PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARA 179

Query: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240
LH + R PF+A+NMAAIP+DLIESELFGHEKGAFTGA T GRFEQA+GGTLFLDE
Sbjct: 180 LHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDE 239

Query: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLERRVQEGKFREDLFHR 300
IGDMP+D QTRLLRVL G++ VGG P++ DVRI+AAT+++L++ + +G FREDL++R
Sbjct: 240 IGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYR 299

Query: 301 LNVIRIHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETETALTRLAWPGNVRQL 360
LNV+ + LPPLR+R EDIP L RHF+Q A +E G++ K E + WPGNVR+L
Sbjct: 300 LNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVREL 358

Query: 361 ENTCRWLTVMAAGQEVLIQDLPGELFEASAPDSPSHLPPDSWATLLAQWADRALRS---- 416
EN R LT + + + + EL S + ++Q + +R
Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418

Query: 417 -----GHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469
L E+E L+ AL T+G++ +AA LLG RNTL +K++ELG+
Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3635PF06580290.034 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 28.7 bits (64), Expect = 0.034
Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 39/189 (20%)

Query: 171 IIEQADRLRNLVDRL-------LGPQHPGMHIT--ESIHKVAERVVALVSMELPDNVRLI 221
I+E + R ++ L L ++ + + V + + L S++ D ++
Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYS-NARQVSLADELTVV-DSYLQLASIQFEDRLQFE 243

Query: 222 RDYDPSLPELPHDPEQIEQVLL-NIVRNALQALGPEGGEITLRTRTAFQLTLHGERYRLA 280
+P++ ++ P + Q L+ N +++ + L P+GG+I L+
Sbjct: 244 NQINPAIMDVQV-PPMLVQTLVENGIKHGIAQL-PQGGKILLKGT------KDNGTVT-- 293

Query: 281 ARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHAGK---IEFTSWPG 337
++VE+ G + ++ TG GL R + G I+ + G
Sbjct: 294 --LEVENTGSLALKNTKE------------STGTGLQNVRERLQMLYGTEAQIKLSEKQG 339

Query: 338 HTEFSVYLP 346
V +P
Sbjct: 340 KVNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3637TCRTETOQM1781e-50 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 178 bits (454), Expect = 1e-50
Identities = 100/448 (22%), Positives = 170/448 (37%), Gaps = 87/448 (19%)

Query: 4 NLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARAETQE--RVMDSNDLEKERGITILAKNT 61
+ NI ++AHVD GKTTL + LL SG + D+ LE++RGITI T
Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61

Query: 62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAHGL 121
+ +W + ++NI+DTPGH DF EV R +S++D +L++ A DG QTR + G+
Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121

Query: 122 KPIVVINKVDRPGARPDWVVDQVFD-------------LFVNLDATDEQLD--------- 159
I INK+D+ G V + + L+ N+ T+
Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181

Query: 160 --------------------------------FPIIYASALNGIAGLDHEDMAEDMTPLY 187
FP+ + SA N I G+D+ L
Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNI-GIDN---------LI 231

Query: 188 QAIIDHVPAPDVDLDGPLQMQISQLDYNNYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTR 247
+ I + + L ++ +++Y+ + R+ G + V I + E
Sbjct: 232 EVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-- 289

Query: 248 NAKVGKVLTHLGLERIDSDIAEAGDIIAITGLG-ELN--ISDTICDPQNVEALPALSVDE 304
K+ ++ T + E D A +G+I+ + +LN + DT PQ +
Sbjct: 290 --KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPL 343

Query: 305 PTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGEL 364
P + + + D L LR +S G++
Sbjct: 344 PLLQTTVEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKV 394

Query: 365 HLSVLIENMRRE-GFELAVSRPKVIFRE 391
+ V ++ + E+ + P VI+ E
Sbjct: 395 QMEVTCALLQEKYHVEIEIKEPTVIYME 422



Score = 32.5 bits (74), Expect = 0.005
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 398 EPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMT 457
EPY + + +++ + ++ + V L IP+R + +RS+
Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTF 595

Query: 458 MTSGTGLLYSTFSHY 472
T+G + + Y
Sbjct: 596 FTNGRSVCLTELKGY 610


114SeKA_A3701SeKA_A3708N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A37010150.724464sensor protein CpxA
SeKA_A3702-213-0.981264transcriptional regulatory protein CpxR
SeKA_A3703-312-0.156464periplasmic repressor
SeKA_A3704-2120.624799cation-efflux pump FieF
SeKA_A3705-2140.5074956-phosphofructokinase
SeKA_A3706-2150.209424sulfate-binding protein
SeKA_A3708-1150.866641sugar (Glycoside-Pentoside-Hexuronide)
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3701PF06580290.037 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 29.1 bits (65), Expect = 0.037
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 28/108 (25%)

Query: 354 LENIVRNALRY------SHTKIEVGFSVDKDGITITVDDDGPGVSPEDREQIFRPFYRTD 407
++ +V N +++ KI + + D +T+ V++ G +E
Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309

Query: 408 EARDRESGGTGLGLAIVESAMQQHRGWVKAD---DSPLGGLRLTLWLP 452
TG GL V +Q G +A G + + +P
Sbjct: 310 --------STGTGLQNVRERLQMLYG-TEAQIKLSEKQGKVNAMVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3702HTHFIS942e-24 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 94.1 bits (234), Expect = 2e-24
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELL-DDSIDLLLLDVMMPKKNGID 61
IL+ DDD + ++L + L G++V + + + DL++ DV+MP +N D
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120
L +++ PV++++A+ + + + E GA DYLPKPF+ EL+ I L
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 121 SEQQQSSD 128
+ D
Sbjct: 125 RPSKLEDD 132


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3704ABC2TRNSPORT280.031 ABC-2 type transport system membrane protein signat...
		>ABC2TRNSPORT#ABC-2 type transport system membrane protein

signature.
Length = 262

Score = 28.4 bits (63), Expect = 0.031
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 10 SRAAIAATAMASALLLIKIFAWWYTGSVSILAALVD-SLVDIAASLTNLLVVRYSLQPAD 68
++AA+A + + W S+L AL +L +A + ++V +L P+
Sbjct: 123 TKAALAGAGIGVVAAALGYTQWL-----SLLYALPVIALTGLAFASLGMVVT--ALAPSY 175

Query: 69 DEHTFGHGKAESLAALAQSMFISGSAL--------------FLFLTSIQNLIKPTPMNDP 114
D F ++L + +F+SG+ FL L+ +LI+P + P
Sbjct: 176 DYFIF----YQTLV-ITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHP 230

Query: 115 GVGIGVTVIALICTIILVTF 134
V + V AL I++ F
Sbjct: 231 VVDVCQHVGALCIYIVIPFF 250


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3708TCRTETB290.041 Tetracycline resistance protein TetB signature.
		>TCRTETB#Tetracycline resistance protein TetB signature.

Length = 458

Score = 29.1 bits (65), Expect = 0.041
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 16 MAINVVIIAMQLLLAYFYTDIYGLSAADVGVLFVVVRMIDAII-DPAMGVLTDKLNTR 72
I + ++ Y D++ LS A++G + + + II G+L D+
Sbjct: 266 GIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPL 323


115SeKA_A3813SeKA_A3827N        Y        YPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3813-1142.927600DNA-binding protein HU-alpha
SeKA_A3814-2173.524939conserved hypothetical protein
SeKA_A3815-2163.105392zinc resistance-associated protein
SeKA_A3816-1142.186667sensor protein ZraS
SeKA_A3817-1151.480121transcriptional regulatory protein ZraR
SeKA_A3818-1191.640644phosphoribosylamine--glycine ligase
SeKA_A3819-213-0.004130phosphoribosylaminoimidazolecarboxamide
SeKA_A3824-211-2.821437*acetyltransferase, gnat family
SeKA_A3825-210-1.737356homoserine O-succinyltransferase
SeKA_A3826-3140.752221malate synthase A
SeKA_A3827-3151.561679isocitrate lyase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3813DNABINDINGHU1201e-39 Prokaryotic integration host factor signature.
		>DNABINDINGHU#Prokaryotic integration host factor signature.

Length = 91

Score = 120 bits (303), Expect = 1e-39
Identities = 49/89 (55%), Positives = 66/89 (74%)

Query: 2 NKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61
NK LI +A+ EL+K + AA+++ +A++ L +G+ VQL+GFG F+V RA R GR
Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62

Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90
NPQTG+EIKI A+ VPAF +GKALKDAVK
Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3816PF06580372e-04 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 36.8 bits (85), Expect = 2e-04
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 29/132 (21%)

Query: 340 QLRFTANETLK-RIQADPDRLTQVLLNLYL-----NAI-HAIGRQ---GTITVEAKESGT 389
++F + L+ Q +P + + + + N I H I + G I ++ +
Sbjct: 233 SIQF--EDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDN- 289

Query: 390 DRVIITVTDSGKGIAPDQLEAIFTPYFTTKADGTGLGLAVVQNIIEQHGG---AIKVKSI 446
V + V ++G + E TG GL V+ ++ G IK+
Sbjct: 290 GTVTLEVENTGSLALKNTKE------------STGTGLQNVRERLQMLYGTEAQIKLSEK 337

Query: 447 EGKGAVFTIWLP 458
+GK + +P
Sbjct: 338 QGKVNA-MVLIP 348


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3817HTHFIS5260.0 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 526 bits (1357), Expect = 0.0
Identities = 181/475 (38%), Positives = 256/475 (53%), Gaps = 37/475 (7%)

Query: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60
M I LV DDD + T+L L GY+V + + + DLV+ DV M
Sbjct: 1 MTGATI--LVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58

Query: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120
+ + L IK P +P+L+M+A ++ TA++A + GA DYL KP D L + +A
Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

Query: 121 LAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVAR 180
LA + ++L S ++G S AMQ + +A + +D T++I G+SGTGKELVAR
Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178

Query: 181 ALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240
ALH R + P V +N AA+ L+ESELFGHEKGAFTGA R GRF +A+GGTLFLD
Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238

Query: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY 300
EIGD+ Q RLLR +Q+ E VG I DVR++AAT++DL + ++ G FR+DLYY
Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298

Query: 301 RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360
RLNVV + +P LR R EDIP L HF+++ + VK F +A++L+ + WPGN+RE
Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLD-VKRFDQEALELMKAHPWPGNVRE 357

Query: 361 LENAIERAVVLLTGEYISERELPLAIAATPIKTEYSGEIQP------------------- 401
LEN + R L + I+ + + + +
Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417

Query: 402 ---------------LVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
L ++E +ILAAL T GN+ +AA LG+ R TL K+
Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3824SACTRNSFRASE392e-06 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 38.8 bits (90), Expect = 2e-06
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 78 VDPDVRGQGIGKRLVEHALTLAP-----GLTTNVNEQNTQAVGFYKKMGFKVTG 126
V D R +G+G L+ A+ A GL + N A FY K F +
Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3827BINARYTOXINB320.008 Binary toxin B family signature.
		>BINARYTOXINB#Binary toxin B family signature.

Length = 764

Score = 31.6 bits (71), Expect = 0.008
Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 289 ETSTPDLELARRFADAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIASFQQQLSDMGYK 346
ET+ PD+ L A P L Y + N D +T + + QL+++
Sbjct: 544 ETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNAT 601


116SeKA_A3941SeKA_A3947N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A3941012-0.204717protein PhnO
SeKA_A3942-111-0.909439protein PhnB
SeKA_A3943-113-0.145218alkylphosphonate utilization operon protein
SeKA_A3944-212-1.067348proline/betaine transporter
SeKA_A3945-113-0.649036sensor protein BasS/pmrB
SeKA_A3946-113-1.015007transcriptional regulatory protein BasR/pmrA
SeKA_A3947-113-0.550375membrane protein YjdB
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3941SACTRNSFRASE332e-04 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 33.4 bits (76), Expect = 2e-04
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 58 LALRNGEVVGMISLHMQFHLHHANWIG--EIQELVVLPPMRGQKIGSQLLAWAEEEARQA 115
L +G I + +NW G I+++ V R + +G+ LL A E A++
Sbjct: 69 LYYLENNCIGRIKIR-------SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN 121

Query: 116 GAELTELSTNIKRRDAHRFYLREGYK 141
L T A FY + +
Sbjct: 122 HFCGLMLETQDINISACHFYAKHHFI 147


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3944TCRTETA432e-06 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 42.5 bits (100), Expect = 2e-06
Identities = 53/284 (18%), Positives = 104/284 (36%), Gaps = 40/284 (14%)

Query: 85 FFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGE 144
G L D++GR+ +L +++ ++ + P +W +L + ++ G + G
Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-----LW---VLYIGRIVAGIT-GAT 112

Query: 145 YTGASIFVAEYSPDRKR----GFMGSWLDFGSIAGFVLGAGVVVLISTIVGEENFLEWGW 200
A ++A+ + +R GFM + FG +AG VLG G++ S
Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG-GLMGGFSP------------ 159

Query: 201 RIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRS 260
PFF A L + L K E+ P SF+ +
Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESH------KGERRPLRREALNPLASFRWARGMTVVA 213

Query: 261 LLSCIGLVIATNVTYYMLLTYMPSYLSHNLHYS-EDHGVLIIIAIMIGMLFVQPVMGLLS 319
L + ++ + + + H+ G+ + ++ L + G ++
Sbjct: 214 ALMAVFFIM--QLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271

Query: 320 DRFGRRPFVIMGSIA-LFALAIPAFILINSNVIGLIFAGLLMLA 362
R G R +++G IA + AF + F +++LA
Sbjct: 272 ARLGERRALMLGMIADGTGYILLAFA----TRGWMAFPIMVLLA 311



Score = 38.7 bits (90), Expect = 5e-05
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 16/164 (9%)

Query: 286 LSHNLHYSEDHGVLI-IIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIALFALAIPAFI 344
L H+ + +G+L+ + A+M PV+G LSDRFGRRP ++ ++L A+ I
Sbjct: 35 LVHSNDVTAHYGILLALYALM--QFACAPVLGALSDRFGRRPVLL---VSLAGAAVDYAI 89

Query: 345 LINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIR---YSALAAAFNISVLIAG 401
+ + + +++ G ++A I V + + + R + ++A F ++AG
Sbjct: 90 MATAPFLWVLYIG-RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFG-MVAG 147

Query: 402 LTPTLAAWLVESSQDLMMPAYYLMVIAVIGLITGI-SMKETANR 444
P L + S P + + + +TG + E+
Sbjct: 148 --PVLGGLMGGFS--PHAPFFAAAALNGLNFLTGCFLLPESHKG 187


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3945PF06580385e-05 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 37.5 bits (87), Expect = 5e-05
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 34/182 (18%)

Query: 184 ARLDQMMDSVSQLLQLARVGQSFSSGNYQEVKLLEDV-ILPSYDELNTM-LETR-QQTLL 240
+ +M+ S+S+L++ S N ++V L +++ ++ SY +L ++ E R Q
Sbjct: 191 TKAREMLTSLSELMR-----YSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQ 245

Query: 241 LPESAADVVVRGDATLLRMLLRNLVENAHRY----SPEGTHITIHISADPDAI-MAVEDE 295
+ + DV V ML++ LVEN ++ P+G I + + D + + VE+
Sbjct: 246 INPAIMDVQV------PPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299

Query: 296 GPGIDESKCGKLSEAFVRMDSRYGGIGLGLSIV-SRITQLHQGQFFLQNRTERTGTRAWV 354
G + + G GL V R+ L+ + ++ ++ A V
Sbjct: 300 GSLA--------------LKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345

Query: 355 LL 356
L+
Sbjct: 346 LI 347


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3946HTHFIS912e-23 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 91.0 bits (226), Expect = 2e-23
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 2 KILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGLH 61
IL+ +DD + L A GY S A + +G L+V D+ +PDE+
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 62 FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARI-RALLRRHN 120
L RI++ + LPVL+++A++T I + GA DYL KPF L EL I RAL
Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

Query: 121 NQGESELTVGNLTLNIGRHQAWRD 144
+ E + +GR A ++
Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQE 148


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A3947BCTERIALGSPF310.013 Bacterial general secretion pathway protein F signa...
		>BCTERIALGSPF#Bacterial general secretion pathway protein F

signature.
Length = 408

Score = 31.0 bits (70), Expect = 0.013
Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 13/163 (7%)

Query: 80 CVFILVGAAAQYFILTYGIIIDRSMIANMMDTTPAETFALM-TPQMVLTLG---LSGVLA 135
CV +V A +L+ + +M P T LM V T G L +LA
Sbjct: 177 CVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLA 236

Query: 136 AVIAFWVKIRPATPRLRSGLYRLASVLISILLVILVAAFFYKDYASLFRNNKQLIKSLSP 195
+AF V +R R+ L LI + L A + + + L + L++++
Sbjct: 237 GFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRI 296

Query: 196 SNSIVASWSWYSHQRLANLPLVRIGEDAHRN--------PLML 230
S V S + H+ VR G H+ P+M
Sbjct: 297 S-GDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMR 338


117SeKA_A4028SeKA_A4034N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4028-2142.927204N-acetylmuramoyl-L-alanine amidase AmiB
SeKA_A40290162.310530DNA mismatch repair protein MutL
SeKA_A40301171.241399tRNA delta(2)-isopentenylpyrophosphate
SeKA_A40314231.118493RNA chaperone Hfq
SeKA_A40324220.961360GTP-binding protein HflX
SeKA_A40334211.344730HflK protein
SeKA_A40344191.216529HflC protein
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4028PF03544290.033 Gram-negative bacterial tonB protein
		>PF03544#Gram-negative bacterial tonB protein

Length = 243

Score = 28.8 bits (64), Expect = 0.033
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 130 PPPPPPVVAKRVESAPRPTEPARNPFKSSDDRLTGVTSSNTVTRPAARASAGAGDKVVIA 189
P P P K+VE R +P + S + + RP + + A K V +
Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFE-------NTAPARPTSSTATAATSKPVTS 152

Query: 190 IDAG 193
+ +G
Sbjct: 153 VASG 156


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4029ALARACEMASE300.028 Alanine racemase signature.
		>ALARACEMASE#Alanine racemase signature.

Length = 356

Score = 30.1 bits (68), Expect = 0.028
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 31 VENSLDAGATRVDIDIER---GGAKLIR-IRDNGCGIKKEELALALARHATSKIASLDDL 86
++ SLD A + ++ I R A++ ++ N G E + A+ + +L++
Sbjct: 5 IQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEA 64

Query: 87 EAIISLGFRGEAL----------ASISSVSRLTLTSRTAEQAEAWQAYAEGRDMDVTVK- 135
+ G++G L I RLT + Q +A Q +D+ +K
Sbjct: 65 ITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKV 124

Query: 136 -PAAHPVGTTLEVLDLFYNTPARRKFMRTEK--TEFNHIDE 173
+ +G + + + + + F +
Sbjct: 125 NSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEH 165


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4032SECA330.002 SecA protein signature.
		>SECA#SecA protein signature.

Length = 901

Score = 33.3 bits (76), Expect = 0.002
Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 282 HVVDAADVRVQENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEENK-PIRV 340
++D +DV N + IDA+ P + ++ + + R+ D + PI
Sbjct: 665 ELLDVSDVSETINSIREDVFKATIDAYIPPQSL--EEMWDIPGLQERLKNDFDLDLPIAE 722

Query: 341 WLSAQSGVGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSV 400
WL + + L + + + + + + R + LQ ++ W E ++
Sbjct: 723 WLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAM 782

Query: 401 SLQVRMPIVDWRRLCKQEPALIEY 424
+R I R +++P EY
Sbjct: 783 D-YLRQGIH-LRGYAQKDP-KQEY 803


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4034PYOCINKILLER290.030 Pyocin S killer protein signature.
		>PYOCINKILLER#Pyocin S killer protein signature.

Length = 617

Score = 29.0 bits (64), Expect = 0.030
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 225 NRMRAEREAVARRHRSQGQEEAEKLRAAADYEVTK---TLAEAERQGRIMRGEGDAEAAK 281
N+ R + A A+R + + +RAA Y + +A A +G I +G A A+
Sbjct: 220 NKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQ 279

Query: 282 LFADA 286
+DA
Sbjct: 280 AISDA 284


118SeKA_A4228SeKA_A4235N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4228216-0.160307ribosomal-protein-alanine acetyltransferase
SeKA_A42290140.8641115-nucleotidase YjjG
SeKA_A4230-1141.876397peptide chain release factor 3
SeKA_A4231-1122.210252hypothetical protein
SeKA_A4232-1112.109021osmotically inducible protein Y
SeKA_A4233-1112.691973hypothetical protein
SeKA_A4234-1122.608524patatin
SeKA_A4235-2172.642819hydrolase, TatD family
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4228SACTRNSFRASE482e-10 Streptothricin acetyltransferase signature.
		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

Length = 173

Score = 48.4 bits (115), Expect = 2e-10
Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 12 DEATLFNIAVDPDFQRRGLGRMLLEHLIDELEKRGVVTLWLEVRASNAAAIALYESLGF 70
A + +IAV D++++G+G LL I+ ++ L LE + N +A Y F
Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4230TCRTETOQM2136e-64 Tetracycline resistance protein TetO/TetQ/TetM family ...
		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

signature.
Length = 639

Score = 213 bits (545), Expect = 6e-64
Identities = 109/452 (24%), Positives = 209/452 (46%), Gaps = 44/452 (9%)

Query: 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSSQHAKSDWMEMEKQRGISIT 71
K +++H DAGKTT+TE +L AI G+V ++D +E+QRGI+I
Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGT----TRTDNTLLERQRGITIQ 57

Query: 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 131
T + F + + VN++DTPGH DF + YR+L+ +D +++I A GV+ +TR L R
Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117

Query: 132 LRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETY 191
P + F+NK+D++ D + +++ +L K +
Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI------------------KQKVE 159

Query: 192 LYQTGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVQGASNEFDEELFLAGEI 251
LY E + + D + + ++ + + LEL Q S F +
Sbjct: 160 LYPNMCVTNFTESEQWDTVIEGN-DDLLEKYMSGKSLEALELEQEES-----IRFHNCSL 213

Query: 252 TPVFFGTALGNFGVDHMLDGLVAWAPAPMPRQTDTRTVEASEEKFTGFVFKIQANMDPKH 311
PV+ G+A N G+D++++ + + + + G VFKI+ K
Sbjct: 214 FPVYHGSAKNNIGIDNLIEVITNKFYSS---------THRGQSELCGKVFKIE--YSEK- 261

Query: 312 RDRVAFMRVVSGKYEKGMKLRQVRTGKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHG 371
R R+A++R+ SG +R K + I++ T + G+ +++AY G+I+ L N
Sbjct: 262 RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEF 320

Query: 372 TIQIGDTFTQGEMMKFTGIPNFA-PELFRRIRLKDPLKQKQLLKGLVQLSEEG-AVQVFR 429
+++ +++ P L + P +++ LL L+++S+ ++ +
Sbjct: 321 -LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYV 379

Query: 430 PISNNDLIVGAVGVLQFDVVVARLKSEYNVEA 461
+ +++I+ +G +Q +V A L+ +Y+VE
Sbjct: 380 DSATHEIILSFLGKVQMEVTCALLQEKYHVEI 411


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4233CHANLCOLICIN270.002 Channel forming colicin signature.
		>CHANLCOLICIN#Channel forming colicin signature.

Length = 522

Score = 27.3 bits (60), Expect = 0.002
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 4 WGIIFLVIALIA--------AALGFGGLAGTAAGAAKIVFVVGIVLFLV 44
W +FL + A AL F LAGT G I V GI+ +
Sbjct: 460 WKPLFLTLEKKAADAGVSYVVALLFSLLAGTTLGIWGIAIVTGILCSYI 508


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4235UREASE290.028 Urea amidohydrolase (urease) protein signature.
		>UREASE#Urea amidohydrolase (urease) protein signature.

Length = 570

Score = 28.6 bits (64), Expect = 0.028
Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 37/141 (26%)

Query: 6 IDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAA-------------HFPRVLAL 52
+D+H HF P I+ A +G+ ++ T A H R++
Sbjct: 133 MDSHIHFICP-------QQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMIEA 185

Query: 53 AARFPSLYAALGLHPIVIERHADDDPDKLQQALAQQQNVVAVGEIGLDLYRDDPQFARQE 112
A FP A G + P AL + V G L L+ D +
Sbjct: 186 ADAFPMNLAFAG-------KGNASLPG----ALVEM---VLGGATSLKLHED---WGTTP 228

Query: 113 RFLDAQLQLAKRYDLPVILHS 133
+D L +A YD+ V++H+
Sbjct: 229 AAIDCCLSVADEYDVQVMIHT 249


119SeKA_A4324SeKA_A4334N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4324-211-1.727611FKBP-type 16 kDa peptidyl-prolyl cis-trans
SeKA_A4325-1110.4463724-hydroxy-3-methylbut-2-enyl diphosphate
SeKA_A4326-1172.355865putative nitrite reductase
SeKA_A4327-1243.727774Non-specific ribonucleoside hydrolase RihC
SeKA_A4328-2222.182539transcriptional regulatory protein CitB
SeKA_A4329-1212.601715sensor kinase DpiB
SeKA_A4330-1254.960469oxaloacetate decarboxylase beta chain
SeKA_A4331-2183.153120oxaloacetate decarboxylase alpha subunit
SeKA_A4332-1120.343134conserved domain protein
SeKA_A4333-1110.429156citrate-sodium symporter
SeKA_A43340111.755346[citrate (pro-3S)-lyase] ligase
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4324INFPOTNTIATR290.007 Macrophage infectivity potentiator signature.
		>INFPOTNTIATR#Macrophage infectivity potentiator signature.

Length = 233

Score = 28.8 bits (64), Expect = 0.007
Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 8 NSAILVHFTLKLDDGSTAESTRNNGKPALFRL 39
+ + V +T L DG+ +ST GKPA F++
Sbjct: 144 SDTVTVEYTGTLIDGTVFDSTEKAGKPATFQV 175


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4328HTHFIS691e-15 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 68.7 bits (168), Expect = 1e-15
Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 1 MDSITTLIVEDEPMLAEILVDTIKLFPQFSIIGIADKLESAKKQIRLYQPQLILLDNFLP 60
M T L+ +D+ + +L L + I + + I L++ D +P
Sbjct: 1 MTGATILVADDDAAIRTVLNQA--LSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58

Query: 61 DGKGIDLIRHTISANYTGRIIFITADNHMDTISDALRMGVFDYLIKPVHYQRLQHTLERF 120
D DL+ A ++ ++A N T A G +DYL KP L + R
Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118

Query: 121 TRYRSSLRSSEQANQTHVDAL 141
S + + L
Sbjct: 119 LAEPKRRPSKLEDDSQDGMPL 139


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4329CARBMTKINASE300.020 Bacterial carbamate kinase signature.
		>CARBMTKINASE#Bacterial carbamate kinase signature.

Length = 314

Score = 30.2 bits (68), Expect = 0.020
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 104 DATYITVGNEKGQRLYHVNPDEIGKYMEGGDSDDALYNAKSYVSVRKGSLGSSLRGKSPI 163
+ + G EK Q L V +E+ KY E G + GS+G +
Sbjct: 238 NGAALYYGTEKEQWLREVKVEELRKYYEEG-------------HFKAGSMGPKVLAAIRF 284

Query: 164 QDSTGKVIGIVSVGYTLEQLD 184
+ G+ I + +E L+
Sbjct: 285 IEWGGERAIIAHLEKAVEALE 305


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4331RTXTOXIND330.002 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 33.3 bits (76), Expect = 0.002
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 508 ASSAPVQAAAPA-GTGTP------VSAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMET 560
+ V+ A A G T + + ++I EG++V +GDVLL L A+ E
Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134

Query: 561 EIRAAQA 567
+ Q+
Sbjct: 135 DTLKTQS 141



Score = 29.4 bits (66), Expect = 0.048
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 535 KVIATEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKSGDAVSVGDTLMTL 590
V G+ G EI+ + V+ I VK G++V GD L+ L
Sbjct: 82 IVATANGKLTHSGRSK----------EIKPIENSIVKEIIVKEGESVRKGDVLLKL 127


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4334LPSBIOSNTHSS381e-05 Lipopolysaccharide core biosynthesis protein signat...
		>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein

signature.
Length = 166

Score = 38.3 bits (89), Expect = 1e-05
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 154 NPFTLGHRYLVEQAAAACDWLHLFVVKEDAS--FFSYTDRWALIEQGIAGIDNVTLHSGS 211
+P T GH ++E+ D +++ V++ FS +R I + IA + N + S
Sbjct: 10 DPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPNAQVDSFE 69

Query: 212 AYMISRATFPGYFLKEKGV--VDDCHCQIDLQLFREHLAPAL 251
++ A +G+ + D ++ + + LA L
Sbjct: 70 GLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDL 111


120SeKA_A4504SeKA_A4508N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4504-1140.444634fimbrial usher protein
SeKA_A4505-1121.198814chaperone protein PapD
SeKA_A45060142.083709putative minor fimbrial subunit
SeKA_A45070141.694557fimbrial subunit
SeKA_A45080132.452653minor fimbrial subunit StfG
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4504PF005776970.0 Outer membrane usher protein FimD
		>PF00577#Outer membrane usher protein FimD

Length = 878

Score = 697 bits (1800), Expect = 0.0
Identities = 241/885 (27%), Positives = 385/885 (43%), Gaps = 67/885 (7%)

Query: 3 HYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKDDASLDLSRFSRKGYIMPG 62
H +K RL+ + + A + + A + FN RFL A DLSRF + PG
Sbjct: 17 HIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPG 76

Query: 63 SYHLQVLVNQSQIAQDNIITYSVDNDDPDNTYPCLSPELVSLLGLKPEIADKMIWINAGQ 122
+Y + + +N +A ++ + D PCL+ ++ +GL M +
Sbjct: 77 TYRVDIYLNNGYMATRDVTFNT--GDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDA 134

Query: 123 CLQPDQL-EGMETQTDLSQSTLTVIIPQAYLEYSDEEWDPPSRWDEGIPGVLFDYNVNSQ 181
C+ + Q D+ Q L + IPQA++ + PP WD GI L +YN +
Sbjct: 135 CVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGN 194

Query: 182 WRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANYRHENDSEDKDNFGSSSEQNWDWN 241
Y N G N+GAWRLR + +Y + S S S+ W
Sbjct: 195 SVQNRIGGNSHY-AYLNLQSGLNIGAWRLRDNTTWSYNSSDSS-------SGSKNKWQHI 246

Query: 242 RYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGGSLITDDQMLPPNLRGYAPDISGVAR 301
+ R I LR++LTLG+G + DIFDG N+ G L +DD MLP + RG+AP I G+AR
Sbjct: 247 NTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIAR 306

Query: 302 TNAKVTVTQRGRVIYESQVPAGPFRIQDINET-VSGDLHVKIEEQSGQVQEYDVSTASIP 360
A+VT+ Q G IY S VP GPF I DI SGDL V I+E G Q + V +S+P
Sbjct: 307 GTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVP 366

Query: 361 FLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSAEASWGIANGWSLYGGAIGEQDYQALALG 420
L R G RY + AG + + E F + G+ GW++YGG Y+A G
Sbjct: 367 LLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFG 426

Query: 421 LGRDLALLGAFSVDVTHSRATLPEGSAYGDGTIQGNSFRASYAKDFDDIDSRLTFAGYRF 480
+G+++ LGA SVD+T + +TLP D G S R Y K ++ + + GYR+
Sbjct: 427 IGKNMGALGALSVDMTQANSTLP-----DDSQHDGQSVRFLYNKSLNESGTNIQLVGYRY 481

Query: 481 SEENYMTMDEFIDTHNDDNDR-----------------QRTGHDKEMYTLTYSQNFSAIN 523
S Y + + + + + + LT +Q
Sbjct: 482 STSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGR-T 540

Query: 524 VNAYINYTHRTYWNQPNQD-SYNLTLSHYFDVGEVRGISLSVNGFRNEYDNERDDGVYVS 582
Y++ +H+TYW N D + L+ F+ +LS + +N + RD + ++
Sbjct: 541 STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW---TLSYSLTKNAWQKGRDQMLALN 597

Query: 583 LSIPWGN-----------NRTLSYNGSFSDDNN-SNQVGYYERI--DDRNNYQINAGRAD 628
++IP+ + + + SY+ S + +N G Y + D+ +Y + G A
Sbjct: 598 VNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAG 657

Query: 629 -----NGATLDGYYRHQASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSVN 683
+G+T ++ Y + ++ ++ D + GG A G L +
Sbjct: 658 GGDGNSGSTGYATLNYRGGYGNANIGYSHS-DDIKQLYYGVSGGVLAHANGVTLGQPL-- 714

Query: 684 GGSRLMVDVGDEANVPISGYSTPVYTNAFGKAVIVDVNDYYRNQVKIDITQLPEDTEATL 743
+ ++V + + + V T+ G AV+ +Y N+V +D L ++ +
Sbjct: 715 NDTVVLVKAPGAKDAKVENQTG-VRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDN 773

Query: 744 SIAQATLTEGAIGYRRLEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVGEDGSV 803
++A T GAI + G K + ++ + PFGA V + Q GIV ++G V
Sbjct: 774 AVANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQV 832

Query: 804 YLIGINPGERLQVTW--EGKTQCEA--ALPDPLPGDLFSGLLLPC 844
YL G+ ++QV W E C A LP L + L C
Sbjct: 833 YLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAEC 877


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4506FIMBRIALPAPF392e-06 Escherichia coli: P pili tip fibrillum papF protein...
		>FIMBRIALPAPF#Escherichia coli: P pili tip fibrillum papF protein

signature.
Length = 167

Score = 38.9 bits (90), Expect = 2e-06
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 43 PPCTVTGGE---VEFGNVLTTKVDGVNYRQAVGYRLSCNGRVSDYLKLQIQGNAVTINGE 99
PPCT+ G+ V+FGN+ VD +SC + S L +++ GN + +
Sbjct: 32 PPCTINNGQNIVVDFGNINPEHVDNSRGEVTKNISISCPYK-SGSLWIKVTGNTMGVGQN 90

Query: 100 SVLQTDVDGLGIRL-QTATDGALISPGNTQWLSFQYSGGSGPA-----IEAIPVKNNGVT 153
+VL T++ GI L Q ++ GN ++ + G A ++P +N
Sbjct: 91 NVLATNITHFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSGI 150

Query: 154 LTGGAFNAGATLVVDY 169
L GG F A++ + Y
Sbjct: 151 LNGGDFRTTASMSMIY 166


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4507FIMBRIALPAPE452e-08 Escherichia coli: P pili tip fibrillum papE protein...
		>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein

signature.
Length = 173

Score = 45.0 bits (106), Expect = 2e-08
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 39/184 (21%)

Query: 1 MKKI---VLTMLMGGSLAAQ---AADNLKFHGTLISPPNCTINNDQTIDVEFGNLLINKI 54
MKKI L +++G L +Q AADNL F G LI P CT+ N +V +G++ I +
Sbjct: 1 MKKIRGLCLPVMLGAVLMSQHVHAADNLTFKGKLIIPA-CTVQN---AEVNWGDIEIQNL 56

Query: 55 DGTRYAQ-------NVPYEITCDSTVRDETMAMTLTLSGSVSD--FNPAAVNTSVAGLGI 105
+ Q N PY + TM +T+T +G + P S GL I
Sbjct: 57 VQSGGNQKDFTVDMNCPYSLG--------TMKVTITSNGQTGNSILVPNTSTASGDGLLI 108

Query: 106 ELRQNDQ-----------PFTLGS-TITVNEQSIPVLKAIPVKKSGASLKEGGFDATATL 153
L ++ T G T T + I + + K + SL+ G F ATATL
Sbjct: 109 YLYNSNNSGIGNAVTLGSQVTPGKITGTAPARKITLYAKLGYKGNMQSLQAGTFSATATL 168

Query: 154 QVDY 157
Y
Sbjct: 169 VASY 172


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4508FIMBRIALPAPE388e-06 Escherichia coli: P pili tip fibrillum papE protein...
		>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein

signature.
Length = 173

Score = 37.7 bits (87), Expect = 8e-06
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 16/170 (9%)

Query: 14 ILCGALILP--VSAADNLHFSGSLVASPCTLTMQGTGIAEVNFSSLDSSDFTPDGQSARK 71
++ GA+++ V AADNL F G L+ CT+ AEVN+ ++ + G +K
Sbjct: 11 VMLGAVLMSQHVHAADNLTFKGKLIIPACTVQN-----AEVNWGDIEIQNLVQSG-GNQK 64

Query: 72 PLVFELTDCDSALSNGVQVTFTGTEATGMRGILALDSHSGASGIGIGIETLSGVPVGMND 131
++ C +L ++VT T TG ++ S + G+ I + + +G
Sbjct: 65 DFTVDMN-CPYSLGT-MKVTITSNGQTGNSILVPNTSTASGDGLLIYLYNSNNSGIGNAV 122

Query: 132 EEGAIFT--LVTGNNA---LSLNAWV-QRLPGEDLVPGTFFASALVTFEY 175
G+ T +TG ++L A + + + L GTF A+A + Y
Sbjct: 123 TLGSQVTPGKITGTAPARKITLYAKLGYKGNMQSLQAGTFSATATLVASY 172


121SeKA_A4675SeKA_A4686N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4675-2170.029423attachment invasion locus protein
SeKA_A4676-2172.132451putative response regulator
SeKA_A4677-1134.525969conserved domain protein
SeKA_A4678-1134.867527cytochrome c type biogenesis protein CycH
SeKA_A46790145.297132outer membrane efflux protein OprA
SeKA_A46800144.769807OqxB
SeKA_A4681-1144.521113putative auxiliary transport protein, membrane
SeKA_A46820100.461602copper-translocating P-type ATPase
SeKA_A4683-113-3.587183Cu(I)-responsive transcriptional regulator
SeKA_A4684-112-2.867745conserved domain protein
SeKA_A4685-111-2.477444conserved hypothetical protein
SeKA_A4686-111-2.204092major facilitator superfamily MFS_1
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4675ENTEROVIROMP1347e-43 Enterobacterial virulence outer membrane protein si...
		>ENTEROVIROMP#Enterobacterial virulence outer membrane protein

signature.
Length = 171

Score = 134 bits (339), Expect = 7e-43
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 21/183 (11%)

Query: 1 MKRRSSFLVFLGLLLASPLALANDQHTVSFGYAQTHLSSLKNSDSKDLRGFNFKYRYEFN 60
MK+ + +L + TV+ GYAQ+ N + GFN KYRYE +
Sbjct: 1 MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMN----KMGGFNLKYRYEED 56

Query: 61 ET-WGMLGSFTATRNEMENYTWKEGKLHKNGSDSVDYGSLMFGPTYRFNDYVSLYGNAGI 119
+ G++GSFT T + K Y + GP YR ND+ S+YG G+
Sbjct: 57 NSPLGVIGSFTYTEKSRTASSGDYNK--------NQYYGITAGPAYRINDWASIYGVVGV 108

Query: 120 ATMKF--------NKHSKEDSFAYGAGVIFNPVKSISIDASWEASRFFAVDTNTFGVSVG 171
KF + + F+YGAG+ FNP++++++D S+E SR +VD T+ VG
Sbjct: 109 GYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVG 168

Query: 172 YRF 174
YRF
Sbjct: 169 YRF 171


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4679cdtoxinb310.009 Cytolethal distending toxin B signature.
		>cdtoxinb#Cytolethal distending toxin B signature.

Length = 269

Score = 30.7 bits (69), Expect = 0.009
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 75 AIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDAGRTPADLSVTDEPEINR 134
AIA+RNN A VE +R R + L D R PADL + + R
Sbjct: 155 AIAMRNN----DAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNLTVPVRR 210

Query: 135 RYEMAGATTA 144
E+ A
Sbjct: 211 ASEIISPAAA 220


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4680ACRIFLAVINRP10460.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 1046 bits (2706), Expect = 0.0
Identities = 434/1040 (41%), Positives = 660/1040 (63%), Gaps = 19/1040 (1%)

Query: 6 FFIARPIFAIVLSLLMLLAGAIAFLKLPLSEYPAVTPPTVQVSASYPGANPQVIADTVAA 65
FFI RPIFA VL++++++AGA+A L+LP+++YP + PP V VSA+YPGA+ Q + DTV
Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63

Query: 66 PLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSRALPRLPEEVQ 125
+EQ +NG+D ++YM++ G + I++ F+ GTDPD+AQ+QVQN++ A P LP+EVQ
Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123

Query: 126 RIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVGDVLVWGAGEY 185
+ G+ EK+S LMV VS +S++ V+D L+RL GVGDV ++G +Y
Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQY 182

Query: 186 AMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEASA-AFQMTVNTLGRLTS 244
AMR+WLD + LT D++ L+ QN Q+AAG +G P ++ R +
Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242

Query: 245 EEQFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRSLLNGEAAPALQIIQSPGANAIDV 304
E+FG++ +++ +DG V RL+DVARV LG + Y + + +NG+ A L I + GANA+D
Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302

Query: 305 SNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQSVAITLLEALVLVVLVVVLFLQTW 364
+ AI+ K+ ELQ FPQ ++ YD T FV+ S+ V TL EA++LV LV+ LFLQ
Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362

Query: 365 RASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENVERHISQ 424
RA++IP +AVPV L+GTFA++ FG+S+NTL++FG+VL+IG++VDDAIVVVENVER + +
Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422

Query: 425 GKSPG-EAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTILSA 483
K P EA +K+M ++ G ++ I VL+AVFIP AF G G YRQF++TI + LS
Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482

Query: 484 INSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGFFHRFNRFFDSASNRYVSAVRRA 543
+ +L L+PAL A LL+P ++ GGFF FN FD + N Y ++V +
Sbjct: 483 LVALILTPALCATLLKP---------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533

Query: 544 VRGSVIVMVLYAGFVGLTWLGFHQVPNGFVPAQDKYYLVGIAQLPSGASLDRTEAVVKQM 603
+ + +++YA V + F ++P+ F+P +D+ + + QLP+GA+ +RT+ V+ Q+
Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593

Query: 604 SAIALA--EPGVESVVVFPGLSVNGPVNVPNSALMFAMLKPFDEREDPSLSANAIAGKLM 661
+ L + VESV G S +G N+ + F LKP++ER SA A+ +
Sbjct: 594 TDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK 651

Query: 662 HKFSHIPDGFIGIFPPPPVPGLGATGGFKLQIEDRAELGFEAMTKVQSEIMSKAMQTP-E 720
+ I DGF+ F P + LG GF ++ D+A LG +A+T+ +++++ A Q P
Sbjct: 652 MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPAS 711

Query: 721 LANMLASFQTNAPQLQVDIDRVKAKSMGVSLTDIFETLQINLGSLYINDFNRFGRTWRVM 780
L ++ + + Q ++++D+ KA+++GVSL+DI +T+ LG Y+NDF GR ++
Sbjct: 712 LVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLY 771

Query: 781 AQADAPFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPA 840
QADA FRM ED+ L VR+A GEM+P SAF T G R+ YNG PS++I G A
Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831

Query: 841 PGFSSGQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSALAIFALAVLLAFLILAAQ 900
PG SSG A +E + + LP G+ ++WT + YQE+ +GN A A+ A++ ++ FL LAA
Sbjct: 832 PGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890

Query: 901 YNSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR- 959
Y SWS+P +V+L+ P+ ++ ++ + N+++ +G + +GL+AKNAILIVEFA+
Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950

Query: 960 AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAGM 1019
E +G + A L A R+RLRPILMTS AFI GV+PL ++ GAG+ ++A+GI V GM
Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010

Query: 1020 LGVTLFGLLLTPVFYVVVRR 1039
+ TL + PVF+VV+RR
Sbjct: 1011 VSATLLAIFFVPVFFVVIRR 1030



Score = 89.5 bits (222), Expect = 4e-20
Identities = 68/426 (15%), Positives = 145/426 (34%), Gaps = 34/426 (7%)

Query: 643 FDEREDPSLSANAIAGKLMHKFSHIPDGFIGIFPPPPVPGLGATGGFKLQIEDRAELGFE 702
F DP ++ + KL +P + ++ + + ++
Sbjct: 94 FQSGTDPDIAQVQVQNKLQLATPLLPQEV----QQQGISVEKSSSSYLMVAGFVSDNP-- 147

Query: 703 AMTKVQSEIMSKAMQTPELANM--LASFQTNAPQLQVDI--DRVKAKSMGVSLTDIFETL 758
T+ + L+ + + Q Q + I D ++ D+ L
Sbjct: 148 GTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQL 207

Query: 759 Q---INLGSLYIND---FNRFGRTWRVMAQADAPFRMQQ-EDIGLLKVR-NAKGEMIPLS 810
+ + + + ++AQ R + E+ G + +R N+ G ++ L
Sbjct: 208 KVQNDQIAAGQLGGTPALPGQQLNASIIAQT----RFKNPEEFGKVTLRVNSDGSVVRLK 263

Query: 811 AFVTIMRQSGPDRII-HYNGFPSVDISGGPAPGFSSGQATDAIEKIV---RETLPEGM-- 864
+ +I NG P+ + A G ++ AI+ + + P+GM
Sbjct: 264 DVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKV 323

Query: 865 --VFEWTDLVYQEKQAGNSALAIFALAVLLAFLILAAQYNSWSLPFAVLLIAPMSLLSAI 922
++ T V + + + + A++L FL++ + + P+ LL
Sbjct: 324 LYPYDTTPFV---QLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTF 380

Query: 923 VGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVE-FARAKEHDGADPLTAVLEASRLRLR 981
+ G N T G V+ +GL +AI++VE R D P A ++
Sbjct: 381 AILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQG 440

Query: 982 PILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAGMLGVTLFGLLLTPVFYVVVRRMA 1041
++ + A +P+ G+ + I + + M L L+LTP + +
Sbjct: 441 ALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPV 500

Query: 1042 LKRENR 1047
+
Sbjct: 501 SAEHHE 506


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4681RTXTOXIND484e-08 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 47.9 bits (114), Expect = 4e-08
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 74 ELRSRVGGTLDAVSVPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADF 133
E++ + + V EG V +G +L ++ E + L QA + + Q
Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157

Query: 134 DRIQR-------LVASGAVSRKNADDVTATRNARQAQMQSAKAAVAAARLEL 178
I+ L + ++V + + Q + + L L
Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209



Score = 34.4 bits (79), Expect = 8e-04
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 112 LDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNARQAQMQSAKAAV 171
L +QL Q E A+ ++ + +L + ++ + +
Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKN---------EILDKLRQTTDNIGLLTLEL 318

Query: 172 AAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIV 217
A + I AP++ +V ++ V GGV A L IV
Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHT----EGGVVTTAETLMVIV 360


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4686TCRTETA577e-11 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 56.8 bits (137), Expect = 7e-11
Identities = 56/306 (18%), Positives = 108/306 (35%), Gaps = 17/306 (5%)

Query: 19 FTSWMLDAFDFFILVFVLSDLAEWFHAS---VSDVSIAIMLTLAVRPIGALLFGRMAEKY 75
++ LDA +++ VL L S + I + L ++ A + G +++++
Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF 70

Query: 76 GRRPILMLNILFFTVFELLSAWSPTFMAFLIFRVMYGVAMGGIWGVASSLAMETIPDRSR 135
GRRP+L++++ V + A +P I R++ G+ G VA + + R
Sbjct: 71 GRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDER 129

Query: 136 ----GLMSGIFQAGYPCGYLFASVIFGLFYSMVGWRGMFLIGA---LPVVLLPYIWFKVP 188
G MS F G + A + G F A L
Sbjct: 130 ARHFGFMSACFGFG-----MVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184

Query: 189 ESPVWLAARARKENTALLPVLRKQWKLCLYLVLVMAFFNFFSHGTQDLYPTFLKMQHGFD 248
R N + + L+ V L+ F + + +D
Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244

Query: 249 PHLISI-IAIFYNIAAMLGGIFYGTLSERIGRKKAIMIAAFLALPVLPLWAFSSGSFTIG 307
I I +A F + ++ + G ++ R+G ++A+M+ L AF++ +
Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304

Query: 308 LGAFLM 313
L+
Sbjct: 305 PIMVLL 310



Score = 33.6 bits (77), Expect = 0.001
Identities = 37/186 (19%), Positives = 77/186 (41%), Gaps = 10/186 (5%)

Query: 3 TPLNWTTTQRHVAFASFTSWMLDAF-DFFILVFVLSDLAEWFHASVSDVSIAIMLTLAVR 61
W VA +++ ++V+ + FH + + I++ +
Sbjct: 201 ASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG-EDRFHWDATTIGISLAAFGILH 259

Query: 62 PIG-ALLFGRMAEKYGRRPILMLNILF-FTVFELLSAWSPTFMAFLIFRVMYGVAMG--G 117
+ A++ G +A + G R LML ++ T + LL+ + +MAF I ++ +G
Sbjct: 260 SLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPA 319

Query: 118 IWGVASSLAMETIPDRSRGLMSGIFQAGYPCGYLFASVIFGLFYSMVGWRG-MFLIGA-L 175
+ + S E + +G ++ + G L + I+ S+ W G ++ GA L
Sbjct: 320 LQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA--ASITTWNGWAWIAGAAL 377

Query: 176 PVVLLP 181
++ LP
Sbjct: 378 YLLCLP 383


122SeKA_A4726SeKA_A4731N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A47262153.077423protein AraJ
SeKA_A47271153.200877exonuclease SbcC
SeKA_A4728-2121.723929exonuclease SbcD
SeKA_A4730-2132.305621phosphate regulon transcriptional regulatory
SeKA_A4731-2132.219800phosphate regulon sensor protein PhoR
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4726TCRTETA531e-09 Tetracycline resistance protein signature.
		>TCRTETA#Tetracycline resistance protein signature.

Length = 399

Score = 52.5 bits (126), Expect = 1e-09
Identities = 70/356 (19%), Positives = 122/356 (34%), Gaps = 35/356 (9%)

Query: 23 IFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGH---MISFYAFGVVLGAPVMALF 79
+ ++AL G+G+ IM VL L RD+ + H +++ YA APV+
Sbjct: 11 LSTVALDAVGIGL----IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66

Query: 80 SSRFSLKHILLFLVTLCVMGNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIR 139
S RF + +LL + + AI + +L +GR+V+G GA + I
Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD--IT 124

Query: 140 PGKVTAAVAGMVSGMTVANLVGIPVGTYLSQEFSWRYTFLLIAVFNIAVLTAIFFWVPDI 199
G A G +S +V PV L FS F A N F +P+
Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184

Query: 200 RDKAQGSLREQ----------FHFLRSPAPWLI--FAATMFGNAGVFAWFSYIKPFMMYI 247
+ LR + + A + F + G W +
Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG------E 238

Query: 248 SGFSETSMTFIMMLVGLGM---VLGNLLSGKLSGRYTPLRIAVVTDLVIVLSLMALFFFS 304
F + T + L G+ + +++G ++ R R ++ ++ +
Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLG---MIADGTGYILLA 295

Query: 305 GYKTASLTFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAF--NLGSAIG 358
+ F + + P +L E G G +A +L S +G
Sbjct: 296 FATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4727RTXTOXIND310.024 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 31.3 bits (71), Expect = 0.024
Identities = 23/198 (11%), Positives = 63/198 (31%), Gaps = 10/198 (5%)

Query: 302 QTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLNATGQRLKTWLAEHDGIRVW 361
A + ++ S + ARL R + R+ + +L + ++E + +R+
Sbjct: 131 GAEA-DTLKTQSSLLQARL-EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188

Query: 362 RSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTRQ 421
+ Q+ L + + + L+ + + + L + +L +Q
Sbjct: 189 SLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE-NLSRVEKSRLDDFSSLLHKQ 247

Query: 422 RPLRHRLAALQGQILPKQKRQAKLQAAIARHHQEQAQYTQRLADKRLSYKTK-AQELADV 480
+H + + + + ++ + + E + +K + +L
Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT 307

Query: 481 RTICEQEARIKDLESQRA 498
I L + A
Sbjct: 308 T------DNIGLLTLELA 319


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4728FRAGILYSIN290.028 Fragilysin metallopeptidase (M10C) enterotoxin signat...
		>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin

signature.
Length = 405

Score = 29.3 bits (65), Expect = 0.028
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 149 KQQQLLHAIADYYQQQYQEACQLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFP 208
K+ Q+++ IA++Y +++ + E++ T D + + I A
Sbjct: 135 KEAQMMNEIAEFYAAPFKKTRAIN-EKEAFECIYDSRTRSA--GKD-IVSVKINIDKAKK 190

Query: 209 AQHFPPADYI 218
+ P DYI
Sbjct: 191 ILNLPECDYI 200


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4730HTHFIS972e-25 FIS bacterial regulatory protein HTH signature.
		>HTHFIS#FIS bacterial regulatory protein HTH signature.

Length = 484

Score = 96.8 bits (241), Expect = 2e-25
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 9/149 (6%)

Query: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63
ILV +D+A IR ++ L + G+ + + + DL++ D ++P +
Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

Query: 64 FIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123
+ +K+ D+PV++++A+ ++ E GA DY+ KPF EL+ I +
Sbjct: 65 LLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA-- 120

Query: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSP 152
E L D + G S
Sbjct: 121 -----EPKRRPSKLEDDSQDGMPLVGRSA 144


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4731PF06580371e-04 Sensor histidine kinase
		>PF06580#Sensor histidine kinase

Length = 349

Score = 36.8 bits (85), Expect = 1e-04
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 28/123 (22%)

Query: 300 TFTFEVDDSLSVLGNEEQLRSAISNLVYNAVNH----TPAGTHITVSWRRVAHGAEFCIQ 355
F +++ ++ + + + LV N + H P G I + + ++
Sbjct: 241 QFENQINPAIM---DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297

Query: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNH---HESRLEIDSSPG 412
+ G +G GL V+ L E+++++ G
Sbjct: 298 NTGSLAL------------------KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG 339

Query: 413 KGT 415
K
Sbjct: 340 KVN 342


123SeKA_A4741SeKA_A4747N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A47411150.342160protein-export membrane protein SecD
SeKA_A4742019-0.930530protein-export membrane protein SecF
SeKA_A4743-116-1.521624glyoxalase/bleomycin resistance
SeKA_A4744-216-1.474720HTH domain protein
SeKA_A4745-217-2.019528HNH endonuclease
SeKA_A4746-2130.990553hypothetical protein
SeKA_A4747-1140.754793nucleoside-specific channel-forming protein tsx
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4741SECFTRNLCASE696e-15 Bacterial translocase SecF protein signature.
		>SECFTRNLCASE#Bacterial translocase SecF protein signature.

Length = 333

Score = 69.5 bits (170), Expect = 6e-15
Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 4/165 (2%)

Query: 433 IQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIF-FYKKFGLIATSALVANLVLIV 491
++I ++GP + + + + + LA VV + ++ F +F L A ALV +++L V
Sbjct: 135 LKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTV 194

Query: 492 GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL--SNGRTVQQAINEGYAGA 549
G+ ++L + +A ++ +++ V++ +R++E L ++ +N
Sbjct: 195 GLFAVL-QLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNET 253

Query: 550 FSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAI 594
S +TTL+ ++ + G I+GF GV T ++++
Sbjct: 254 LSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSV 298


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4742SECFTRNLCASE352e-124 Bacterial translocase SecF protein signature.
		>SECFTRNLCASE#Bacterial translocase SecF protein signature.

Length = 333

Score = 352 bits (904), Expect = e-124
Identities = 104/309 (33%), Positives = 176/309 (56%), Gaps = 12/309 (3%)

Query: 17 YDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQ 76
+DF RW + FG + +++IA++++ V G N+G+DF GGT I ++ V R AL+
Sbjct: 14 FDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALE 73

Query: 77 KAGYEEPQLQNFGS------SHDIMVRMPPTEGETGGQVLGSKVVTIINE------ATNQ 124
+ + H M+R+ E G + G++ ++N+ A +
Sbjct: 74 PLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDP 133

Query: 125 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184
+ E VGP V +L T +LL A + I+ Y+ RFEW+ A G V+AL HDV++T
Sbjct: 134 ALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLT 193

Query: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQT 244
+G+ ++ ++ DLT VA+L+++ GYS+ND++VV DR+REN K + ++ N+S+ +T
Sbjct: 194 VGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNET 253

Query: 245 LHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 304
L RT++T TTL+ ++ + ++GG V+ GF M+ GV GT SS+YVA + L +G+ R
Sbjct: 254 LSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRN 313

Query: 305 HMLQQKVEK 313
+ +K
Sbjct: 314 KEKKDPSDK 322


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4744ARGREPRESSOR334e-04 Bacterial arginine repressor signature.
		>ARGREPRESSOR#Bacterial arginine repressor signature.

Length = 149

Score = 32.9 bits (75), Expect = 4e-04
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 3 RRADRLFQIVQILRGRRLTT-----AALLAQRLAVSERTIYRDIRDLSLSGVPVEG 53
+ R +I +I+ + T L V++ T+ RDI++L L VP
Sbjct: 2 NKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNN 57


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4747CHANNELTSX493e-180 Nucleoside-specific channel-forming protein Tsx signa...
		>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx

signature.
Length = 294

Score = 493 bits (1270), Expect = e-180
Identities = 240/295 (81%), Positives = 254/295 (86%), Gaps = 9/295 (3%)

Query: 1 MKKTLLAVSAALALTSSFTANAAENDQPQYLSDWWHQSVNVVGSYHTRFSPKLNNDVYLE 60
MKKTLLA A +AL+++F A AAEND+PQYLSDWWHQSVNVVGSYHTRF P++ ND YLE
Sbjct: 1 MKKTLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLE 60

Query: 61 YEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWSDGSPLFMEIEPRFSIDKLTGADLSFG 120
YEAFAKKDWFDFYGYID P F GN KGIW+ GSPLFMEIEPRFSIDKLT DLSFG
Sbjct: 61 YEAFAKKDWFDFYGYIDAPVFFG-GNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFG 119

Query: 121 PFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTGLPMGLSLNVYAKYQWQNYGASNE 180
PFKEWYFANNYIYDMG N + QSTWYMGLGTDIDTGLPM LSLNVYAKYQWQNYGASNE
Sbjct: 120 PFKEWYFANNYIYDMGRNDSQEQSTWYMGLGTDIDTGLPMSLSLNVYAKYQWQNYGASNE 179

Query: 181 NEWDGYRFKVKYFVPITDLWGGKLSYIGFTNFDWGSDLGDDP--------NRTSNSIASS 232
NEWDGYRFKVKYFVP+TDLWGG LSYIGFTNFDWGSDLGDD RTSNSIASS
Sbjct: 180 NEWDGYRFKVKYFVPLTDLWGGSLSYIGFTNFDWGSDLGDDNFYDLNGKHARTSNSIASS 239

Query: 233 HILALNYDHWHYSVVARYFHNGGQWQNGAKLNWGDGDFSAKSTGWGGYLVVGYNF 287
HILALNY HWHYS+VARYFHNGGQW + AKLN+GDG FS +STGWGGY VVGYNF
Sbjct: 240 HILALNYAHWHYSIVARYFHNGGQWADDAKLNFGDGPFSVRSTGWGGYFVVGYNF 294


124SeKA_A4814SeKA_A4823N        Y        NPathogenicity Island (unbiased-composition)
LocusTagDNBiasCDNBias%GCBiasProduct
SeKA_A4814-110-0.191726acriflavine resistance protein B
SeKA_A4815011-0.355899acriflavine resistance protein A
SeKA_A4816114-0.780369transcriptional regulator AcrR
SeKA_A48171130.023825potassium efflux system KefA
SeKA_A48183142.938233conserved hypothetical protein
SeKA_A48194153.598957conserved hypothetical protein
SeKA_A48202174.710851primosomal replication protein N''
SeKA_A48211182.955456inner membrane protein YbaN
SeKA_A48222192.954975adenine phosphoribosyltransferase
SeKA_A48232192.881520DNA polymerase III, tau subunit
ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4814ACRIFLAVINRP13680.0 Acriflavin resistance protein family signature.
		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

Length = 1034

Score = 1368 bits (3542), Expect = 0.0
Identities = 810/1033 (78%), Positives = 918/1033 (88%), Gaps = 1/1033 (0%)

Query: 1 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISATYPGADAKTVQDT 60
M NFFI RPIFAWV+AII+M+AG LAIL+LPVAQYPTIAPPAV++SA YPGADA+TVQDT
Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

Query: 61 VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
VTQVIEQNMNGIDNLMYMSS SDS G+V ITLTF+SGTD DIAQVQVQNKLQLA PLLPQ
Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121 EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGS 180
EVQQQG+SVEKSSSS+LMV G ++ + TQ+DISDYVA+N+KD +SR +GVGDVQLFG+
Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 181 QYAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
QYAMRIW++ L KY+LTPVDVIN +K QN Q+AAGQLGGTP + GQQLNASIIAQTR
Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240

Query: 241 TSTDEFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANAL 300
+ +EFGK+ L+VN DGS VRL+DVA++ELGGENY+VIA+ NG+PA+GLGIKLATGANAL
Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300

Query: 301 DTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
DTA AI+A+L +++PFFP GMK++YPYDTTPFV++SIHEVVKTL EAI+LVFLVMYLFLQ
Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 361 NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
N RATLIPTIAVPVVLLGTFA+LAAFG+SINTLTMFGMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421 TEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
E+ LPPKEAT KSM QIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL
Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481 SVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRLFDKSTHHYTDSVGNILRSTGR 540
SVLVALILTPALCAT+LKPV+ H E K GFFGWFN FD S +HYT+SVG IL STGR
Sbjct: 481 SVLVALILTPALCATLLKPVSAE-HHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539

Query: 541 YLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLDEVTDYYLN 600
YLL+Y +IV GM LF+RLPSSFLP+EDQGVFLTM+QLPAGATQERTQKVLD+VTDYYL
Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599

Query: 601 KEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEKNKVEAITQRATAAFSQIKD 660
EKANVESVF VNGF F+G+ QN G+AFVSLK W +R G++N EA+ RA +I+D
Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659

Query: 661 AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLFGEVAKYPDLLVGVRPNG 720
V FN+PAIVELGTATGFDFELIDQAGLGH+ LTQARNQL G A++P LV VRPNG
Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719

Query: 721 LEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
LEDT QFK+++DQEKAQALGVS+SDIN T+ A GG+YVNDFIDRGRVKK+YV ++AK+R
Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779

Query: 781 MLPDDINDWYVRGSDGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
MLP+D++ YVR ++G+MVPFSAF++S W YGSPRLERYNGLPSMEI G+AAPG S+G+A
Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839

Query: 841 MAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFS 900
MA+ME LASKLP+GIGYDWTGMSYQERLSGNQAPAL AIS +VVFLCLAALYESWSIP S
Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899

Query: 901 VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
VMLVVPLG++G LLAAT NDVYF VGLLTTIGLSAKNAILIVEFAKDLM+KEGKG+
Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959

Query: 961 VEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATVLAIF 1020
VEATL AVRMRLRPILMTSLAF+LGV+PL IS+GAGSGAQNAVG GV+GGMV+AT+LAIF
Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019

Query: 1021 FVPVFFVVVRRRF 1033
FVPVFFVV+RR F
Sbjct: 1020 FVPVFFVVIRRCF 1032


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4815RTXTOXIND431e-06 Gram-negative bacterial RTX secretion protein D signat...
		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

signature.
Length = 478

Score = 43.3 bits (102), Expect = 1e-06
Identities = 33/216 (15%), Positives = 76/216 (35%), Gaps = 27/216 (12%)

Query: 100 TYQATYDSAKGDLAKAQAAANIAELTVKRYQKLLGTQYISKQEYDQALADAQQATAAVVA 159
+ Y A +L + + ++ + Q +++ ++ L +Q T +
Sbjct: 256 EQENKYVEAVNELR--VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313

Query: 160 AKAAVETARINLAYTKVTSPISGRIGKSSV-TEGALVQNGQASALATVQQLDPIYVDVTQ 218
+ + + +P+S ++ + V TEG +V + + V + D + V
Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET-LMVIVPEDDTLEVTALV 372

Query: 219 SSNDFLRLKQELA------------NGSLKQENGKAKVDLVTSDGIKFPQSGTLEFSDVT 266
+ D + G L KV + D I+ + G + ++
Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTRYGYL-----VGKVKNINLDAIEDQRLGLVFNVIIS 427

Query: 267 VDQSTGSITLRAIFPNPDHTLLPGMFVRARLQEGTK 302
++++ S + I L GM V A ++ G +
Sbjct: 428 IEENCLSTGNKNIP------LSSGMAVTAEIKTGMR 457



Score = 32.9 bits (75), Expect = 0.002
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 10/133 (7%)

Query: 49 PLQITTELPGR-TVAYRIAEVRPQVSGIILKRNFV-EGSDIEAGVSLYQIDP-------A 99
++I G+ T + R E++P + I+ K V EG + G L ++
Sbjct: 79 QVEIVATANGKLTHSGRSKEIKPIENSIV-KEIIVKEGESVRKGDVLLKLTALGAEADTL 137

Query: 100 TYQATYDSAKGDLAKAQAAANIAELTVKRYQKLLGTQYISKQEYDQALADAQQATAAVVA 159
Q++ A+ + + Q + EL KL Y ++ L
Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197

Query: 160 AKAAVETARINLA 172
+ +NL
Sbjct: 198 WQNQKYQKELNLD 210


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4816HTHTETR2048e-69 TetR bacterial regulatory protein HTH signature.
		>HTHTETR#TetR bacterial regulatory protein HTH signature.

Length = 215

Score = 204 bits (519), Expect = 8e-69
Identities = 187/214 (87%), Positives = 199/214 (92%)

Query: 1 MARKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFS 60
MARKTKQ+A ETRQHILDVALRLFSQQGVS+TSL EIA AAGVTRGAIYWHFK+KSDLFS
Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60

Query: 61 EIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVTEERRRLLMEIIFHKCEFV 120
EIWELSESNIGELE+EYQAKFP DPLSVLREIL+H+LE+TVTEERRRLLMEIIFHKCEFV
Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120

Query: 121 GEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLTRRAAILMRSFISGLMENWLF 180
GEM VVQQAQR+LCLESYDRIEQTLKHCI AKMLP +L+TRRAAI+MR +ISGLMENWLF
Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180

Query: 181 APQSFDLKKEARAYVTILLEMYQLCPTLRASTVN 214
APQSFDLKKEAR YV ILLEMY LCPTLR N
Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLRNPATN 214


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4817CHANLCOLICIN367e-04 Channel forming colicin signature.
		>CHANLCOLICIN#Channel forming colicin signature.

Length = 522

Score = 36.2 bits (83), Expect = 7e-04
Identities = 41/219 (18%), Positives = 81/219 (36%), Gaps = 18/219 (8%)

Query: 90 RQKVAQAPEKMRQ-ATAALNALSDVDNDDEMRKTLSALSLRQLELRVA--QVLDDLQNSQ 146
R ++A+A EK R+ A AA A + + + + A + RQL+L A + L L
Sbjct: 129 RLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEA 188

Query: 147 NDLAAYNSQLVSLQTQPERVQNAMYTASQQI-------QQIRNRLDGNNVGEAALRPSQQ 199
+ +L + Q++ ++ + T + ++ L G A +
Sbjct: 189 KAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYK 248

Query: 200 VLLQAQQALLNAQID--------QQRKSLEGNTVLQDTLQKQRDYVTANSNRLEHQLQLL 251
L + + L D + + G +++ QKQ NR+ + +
Sbjct: 249 ELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQI 308

Query: 252 QEAVNSKRLTLTEKTAQEAISPDETARIQANPLVKQELD 290
Q+A++ A+ + + + Q N L Q D
Sbjct: 309 QKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKD 347


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4818FLGFLIH310.006 Flagellar assembly protein FliH signature.
		>FLGFLIH#Flagellar assembly protein FliH signature.

Length = 228

Score = 30.5 bits (68), Expect = 0.006
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 222 AEPGALIRQLAQGAPQYKEQLMT--IAEWLEE---KGRTEGLQKGLEQGLAQGREAEARA 276
AEP +L +QLAQ Q EQ IAE ++ +G EGL +GLEQGLA+ + +A
Sbjct: 36 AEP-SLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPI 94

Query: 277 IAR 279
AR
Sbjct: 95 HAR 97



Score = 28.6 bits (63), Expect = 0.024
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 233 QGAPQYKEQLMTIAEWLEEKGRTEGLQKGLEQGLAQGREAEARAIARKMLANGLEPGLIA 292
+ P ++QL + E+G G+ +G +QG QG + + LA GLE GL
Sbjct: 35 EAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQ--------EGLAQGLEQGLAE 86

Query: 293 SVTGITP 299
+ + P
Sbjct: 87 AKSQQAP 93


ORFs having significant similarity with Known Virulence factors
LocusTagHitsScoreE-valueComments
SeKA_A4823IGASERPTASE459e-07 IgA-specific serine endopeptidase (S6) signature.
		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

Length = 1541

Score = 45.1 bits (106), Expect = 9e-07
Identities = 52/275 (18%), Positives = 85/275 (30%), Gaps = 34/275 (12%)

Query: 366 PEPETPRQSFAPVAPTAVMTPP--QVQQPSAP-----------APQTSPAPLPASTSQVL 412
PE E Q V T + TP Q PS P AP PAP S +
Sbjct: 983 PEVEKRNQ---TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039

Query: 413 AARNQLQRAQGVTKTKK--SEPAAASRARPVNNSALERLASVSERVQARPAPSALETAPV 470
A N Q ++ V K ++ +E A + R + + + E A
Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQN-----------REVAKEAKSNVKANTQTNEVAQS 1088

Query: 471 KKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLS 530
E T +TKE K K +E EKT E K+ ++ + + V +
Sbjct: 1089 GSET----KETQTTETKETATVEKEEKAKVETEKTQE-VPKVTSQVSPKQEQSETVQPQA 1143

Query: 531 LPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSGAQQKLAQALSDLTGTTVELTIVED 590
P +N + Q+ + +S+ Q + + VE
Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203

Query: 591 DNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQT 625
T + + ++ S+ + T
Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPAT 1238



 
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