>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 27.6 bits (61), Expect = 0.007 Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 57 ELSPKITQFAQLLEDINQQLLKVADVVEQTDSDIASQINK 96 ++ P+I + +L +I Q++ VAD T SD+ + N Sbjct: 489 KVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNT 528
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.1 bits (73), Expect = 0.004 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 18/183 (9%) Query: 23 DYGNSTWIASMGGLGQKILGIYQIVELLVSIVLNPFGGALADRFQRRKILLITDAICAIM 82 D +S + + G+ +L +Y +++ + P GAL+DRF RR +LL++ A A+ Sbjct: 34 DLVHSNDVTAHYGI---LLALYALMQFACA----PVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 83 CFLLSFIGDDKVMVYGLIVANAILAVSNAFSSPAYKSYIPEIVDKADIITYNANLETIVQ 142 +++ V+ G IVA A +YI +I D + + + Sbjct: 87 YAIMATAPFLWVLYIGRIVAGITGAT-----GAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 143 IISVSSPVLGFLIFNNFGIRITLIVDA----ITFLISFLFLY-AIKVERVQLSKQEKVAI 197 V+ PVLG L+ F A + FL L + K ER L ++ + Sbjct: 142 FGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPL 200 Query: 198 KNI 200 + Sbjct: 201 ASF 203
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 1e-14 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%) Query: 22 KQKVILSAIELFASQGFHGTSTAQLAKNAEVSQATIYKYFETKDKLLVFILELIVQTIGR 81 +Q ++ A+ LF+ QG TS ++AK A V++ IY +F+ K L I EL IG Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 82 PFFTELSTF------STKEELIHFF 100 + F +E LIH Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVL 97
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 55.3 bits (133), Expect = 7e-11 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 197 RTSGTLDRLLATPVKRSDIVFGYMLSYGILAIIQTIVIVLSTIWLLDIQVVGSIFSVIIV 256 T + +L T ++ DIV G M A + I + L Q + ++++ ++ Sbjct: 95 EGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYALPVI 154 Query: 257 NFILALVALSLGILMSTLAKSEFQMMQFIPLIIMPQLFFSG-IIPLENMASWAQTVGKIL 315 L SLG++++ LA S + + L+I P LF SG + P++ + QT + L Sbjct: 155 ALT-GLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFL 213 Query: 316 PLSYSGDALTKIIMYGQGLPNVSSNLLVLLLFLIILTIANIFGLKR 361 PLS+S D L + IM G + +V ++ L ++++I + L+R Sbjct: 214 PLSHSID-LIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.003 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 22/90 (24%) Query: 35 LIGPSGAGKSTLIKTMLGME-KADKGTALVLDTQMPDRNILNQIGYMA-QSDALYESLTG 92 L G G GKSTLI T++G++ +D D Y YE Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSD---THFDIGTGKD-------SYEQIAGIVAYE---- 646 Query: 93 LENLLFFGKMKGIQKTELKQQITHISKVVD 122 +M ++ + + S D Sbjct: 647 ------LSEMTAFRRADAEAVKAFFSSRKD 670
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 60.0 bits (145), Expect = 9e-14 Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 8/94 (8%) Query: 74 ICLIAKLKNKVIGLITIISQSD--IEIEHVGDLFIAVQKDYWGYGIGHILMEEAIEWASD 131 + L+N IG I I S + IE IAV KDY G+G L+ +AIEWA + Sbjct: 66 AAFLYYLENNCIGRIKIRSNWNGYALIED-----IAVAKDYRKKGVGTALLHKAIEWAKE 120 Query: 132 NDITRRLELSVQGRNERAIHLYQKFGFEIDGLQT 165 N L L Q N A H Y K F I + T Sbjct: 121 NHFC-GLMLETQDINISACHFYAKHHFIIGAVDT 153
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.8 bits (67), Expect = 0.024 Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 13/102 (12%) Query: 337 YGTTASNDSSTYSSTQENNYNTTPYSEAPP----SYS---GNTTYSSETNQTTHQNYYNS 389 + +++ S ++ Y SYS G + +T N Sbjct: 614 WRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNY 673 Query: 390 STPASN------YSSNTNTGQADSSGSVNNHNGAATPNPNTG 425 N +S + SG V H T Sbjct: 674 RGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLN 715
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 2e-10 Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 5 RQIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDL 64 ++ Q+T+ I + + L + S ++ ++ A V R Y H++ K L E+ E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 65 FHHL 68 ++ Sbjct: 67 ESNI 70
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 67.0 bits (163), Expect = 3e-13 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 19/98 (19%) Query: 1303 ATPGDKPAKVVVTYPDGSKDTVDVTVKVVDPRTDADKNDPAGKDQQVNGKGN-------- 1354 A ++ AK+ S+ D + G+ Q K N Sbjct: 449 AKQAEELAKLRAGKASDSQTP--------DAKPGNKAVPGKGQAPQAGTKPNQNKAPMKE 500 Query: 1355 ---KLPATGENATPFFNVVALTIMSSVGLLSVSKKKED 1389 +LP+TGE A PFF ALT+M++ G+ +V K+KE+ Sbjct: 501 TKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEE 538 Score = 63.5 bits (154), Expect = 4e-12 Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 14 QTKQRFSIKKFKFGAASVLIGISFLGGFTQGQFNISTDTVFAAEVISGSAVTLNTN 69 T + +S++K K G ASV + ++ LG N + ++ + V + Sbjct: 5 NTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERAD 60
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 26.7 bits (59), Expect = 0.026 Identities = 10/23 (43%), Positives = 16/23 (69%) Query: 3 KKLLGLMILAISTVFLVACSTNS 25 KKL L++L +S + LVAC++ Sbjct: 2 KKLGTLLVLFLSAIILVACASGK 24
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.003 Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 6 EFLKDFEEWLQSQISINQMAMDSAKKVLEEDKDERAADAYI 46 L +F+E + +Q I + +D A+++LE+ + A I Sbjct: 65 NVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDII 105
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 220 bits (563), Expect = 3e-70 Identities = 79/313 (25%), Positives = 149/313 (47%), Gaps = 12/313 (3%) Query: 1 MRKKFLLLMSFVAMFA-AWQLVQVKQVWADSKLKVVTTFYPVYEFTKNVVGDKADVSMLI 59 M+K LL+ F++ K + KLKVV T + + TKN+ GDK D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 KAGTEPHDFEPSTKNIAAIQDSNAFVYMDDNMETWAPKVA-KSVKSKKVTTIKGTGDMLL 118 G +PH++EP +++ +++ Y N+ET K V++ K T K + Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDY--FAV 118 Query: 119 TKGVEEEGEEHEGHGHEGHHHELDPHVWLSPERAISVVENIRNKFVKAYPKDAASFNKNA 178 + GV+ EG +G DPH WL+ E I +NI + P + + KN Sbjct: 119 SDGVDVI--YLEGQNEKGKE---DPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNL 173 Query: 179 DAYIAKLKELDKEYKNGLSN--AKQKSFVTQHAAFGYMALDYGLNQVPIAGLTPDAEPSS 236 Y KL +LDKE K+ + A++K VT AF Y + YG+ I + + E + Sbjct: 174 KEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTP 233 Query: 237 KRLGELAKYIKKYNINYIYFEENASNKVAKTLADEVGVKTAVLSPLEGLSKKEMAAGEDY 296 +++ L + +++ + ++ E + ++ KT++ + + + ++++ G+ Y Sbjct: 234 EQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAEQG-KEGDSY 292 Query: 297 FSVMRRNLKVLKK 309 +S+M+ NL + + Sbjct: 293 YSMMKYNLDKIAE 305
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 25.0 bits (54), Expect = 0.016 Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 29 ENIELKKQLKRLKAENW 45 E I L+ Q KR+ AE W Sbjct: 3 ETIPLRVQFKRMTAEEW 19
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 27.0 bits (59), Expect = 0.039 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 71 QAEAKAEKYKETIRLAMELSQKKKVDAGMFKVSLRRSKKVEILDETKIPLDYMQEKIEYK 130 + A E Y E+ ++K K + FK S+ K E +ET + Q+ ++ Sbjct: 30 EVNAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKI 89 Query: 131 PMKA-EISKALKSGIDISGVELIETESLQ 158 P EI L I + ++L+E + LQ Sbjct: 90 PKDVLEIYSELGGEIYFTDIDLVEHKELQ 118
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.042 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 16/105 (15%) Query: 7 INIFEKVQVFQRKIYLSTKADNKRKFGVLYDKVYRKDILKVAWFYVKRNKGSAGIDDFTI 66 +++ + L + + GV + + A G ++DF Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDI--NQTISTAL-------GGTYVNDFID 763 Query: 67 EEIEAYGVQKFLDEIEDQLRNKKYQPKAVKRVYIPKANGKKRPLG 111 V+K + + + R P+ V ++Y+ ANG+ P Sbjct: 764 RGR----VKKLYVQADAKFRM---LPEDVDKLYVRSANGEMVPFS 801
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 33.1 bits (75), Expect = 0.006 Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 11/143 (7%) Query: 299 IITQLYLESFWGDSTV----GKRDNNWAGMSGGAQTRPSGVKVTT---GMARPANEGGTY 351 I+ Q LES WG + G+ N G+ + ++TT + Sbjct: 174 ILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKF 233 Query: 352 MHYASVDDFLKDYTYLLAKQGIYNVVGKKNIAD-YTKGLFRAGGAKYDYAAAGYQSYTNL 410 Y+S + L DY LL + Y V A+ + L AG A + A + TN+ Sbjct: 234 RVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYA---RKLTNM 290 Query: 411 MTNIRNGINKVTGNILNTIDKLW 433 + +++ +KV+ ID L+ Sbjct: 291 IQQMKSISDKVSKTYSMNIDNLF 313
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 36 IVGKSGTGKSTLLSLLAGLD 55 + G G GKSTL++ L GLD Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 5e-18 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Query: 2 KILTVEDDKLIREGISEYLSEFGYTVIQAKDGREALSKFNSD-INLVILDIQIPFINGLE 60 IL +DD IR +++ LS GY V + + +LV+ D+ +P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 61 VLKEIRK-KSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLP 104 +L I+K + +LP+L+++A + I A Y+ KPF L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 29.8 bits (67), Expect = 0.001 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 2 RMILMFDMPTETAEE-----RKAYRKFRKFLLSEGFIMHQFSVY 40 R + FD+ T++ E+ R+ Y +KF+L GF Q+S Y Sbjct: 5 RKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGY 48
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 1117 bits (2891), Expect = 0.0 Identities = 622/639 (97%), Positives = 631/639 (98%) Query: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240 Query: 241 STHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSING 300 STHRG SELCG VFKIEY++KRQRLAYIRLYSGVLHLRDSVR+SEKEKIK+TEMYTSING Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING 300 Query: 301 ELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREM 360 ELCKID+AYSGEIVILQNEFLKLNSVLGDTKLLPQR++IENP PLLQTTVEPSKP+QREM Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREM 360 Query: 361 LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIY 420 LLDALLEISDSDPLLRYYVDS THEIILSFLGKVQMEV ALLQEKYHVEIE+KEPTVIY Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Query: 421 MERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 MERPLK AEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG Sbjct: 421 MERPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 481 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL Sbjct: 481 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 541 SFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 SFKIYAPQEYLSRAY DAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 601 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT 639 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT Sbjct: 601 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT 639
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 7e-05 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 526 DTKDRMVDTASGLKEQVKDLPTNARYA-VYQGKSKVKENVRDLTSSISQTKADRASG--R 582 D + KE ++ N + V Q S+ KE T + + + + Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 583 KEQQEQRRKT--IAKRRSEMEQVKQKKQPASSVHERPTTRQEQYHDEQTSKQSNIQTSYK 640 ++ QE + T ++ ++ + E V+ + +PA PT ++ QT+ ++ Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARE--NDPTVNIKEP-QSQTNTTAD------ 1167 Query: 641 ESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTTADRTSQRPITKERPSTVQ 700 Q AK+ V+ + GN+V E P +T + + + +P Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVE----NPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 701 RVPLQNTRSRPPIKTAT 717 R +++ T + Sbjct: 1224 RRSVRSVPHNVEPATTS 1240
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.024 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Query: 137 IGFDTAVATAVENLDRLRDTSASHNRTFVVEVMGRNA 173 I D V E+ D L + ++E+MGR++ Sbjct: 94 INQDRIVVIDFESTDELGFN---SIYSLIIEIMGRHS 127
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 2e-04 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 29 ILSLVGPSGGGKTTLLRMLAGLE-KIDSGTIVHDGKEVSVDHL 70 + L G G GK+TL+ L GL+ D+ + GK+ S + + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD-SYEQI 639
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 1e-14 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 2 KVLVVDDEPVARNELIYLLNKYDSNLVIAEAHDMATALAILLRETFDVALLDIHLRDDSG 61 +LV DD+ R L L++ ++ I + AT + D+ + D+ + D++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITS--NAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 LQLAEYINKM-PKPPLLIFATAYDQY--AIQAFEHDARDYLLKPYDFDRLKQAMDRVKGA 118 L I K P P+L+ +A + + AI+A E A DYL KP+D L + + + A Sbjct: 63 FDLLPRIKKARPDLPVLVM-SAQNTFMTAIKASEKGAYDYLPKPFD---LTELIGIIGRA 118 Query: 119 LSTSTIIESVTSGPLFKQQY 138 L+ S Sbjct: 119 LAEPKRRPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 205 bits (522), Expect = 5e-63 Identities = 59/211 (27%), Positives = 110/211 (52%), Gaps = 12/211 (5%) Query: 366 QAEEATRLLQDAEMKSLQAQVNPHFLFNALNTIYGLIRMDSEKARKLVQDFSKVIRANLQ 425 + + Q+A++ +L+AQ+NPHF+FNALN I LI D KAR+++ S+++R +L+ Sbjct: 150 DQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLR 209 Query: 426 RAKQNLIPLHDELEQVNAYLALEEARFPNMVAFNLDNQTNSDDNLMIPPFTLQVLIENSY 485 + + L DEL V++YL L +F + + F ++ +PP +Q L+EN Sbjct: 210 YSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAI-MDVQVPPMLVQTLVENGI 268 Query: 486 KHAFKHVNKNNQLKVTIARNNDRLHIIVQDNGIGIPKEKLITLGKKTQISKQGSGTAIEN 545 KH + + ++ + ++N + + V++ G K +K+ +GT ++N Sbjct: 269 KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN-----------TKESTGTGLQN 317 Query: 546 LVRRLNIIYDGQASLKFESNDSGTCAIVNIP 576 + RL ++Y +A +K A+V IP Sbjct: 318 VRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 26.9 bits (59), Expect = 0.021 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Query: 71 AIDSGVDALSGAAIGTLVGGPVGTVVGAVQG 101 ++ SG+ A AA +LVG PV +VGAV G Sbjct: 377 SVSSGISA---AATTSLVGAPVSALVGAVTG 404
>PF06580#Sensor histidine kinase Length = 349 Score = 27.9 bits (62), Expect = 0.030 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 9/88 (10%) Query: 40 TIASTFNVSPETARKGLNILADLQILTLKHGSGAII-LSKEKAIEFLNQYETSHSVAILK 98 I + P AR+ L L++L +L++ + + L+ E + ++ Y + + Sbjct: 181 NIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADE--LTVVDSY-----LQLAS 233 Query: 99 GKIRDNIKAQQQEMEELA-TLVDDFLLQ 125 + D ++ + Q + V L+Q Sbjct: 234 IQFEDRLQFENQINPAIMDVQVPPMLVQ 261
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 49.1 bits (117), Expect = 4e-09 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 1 MIPKVIHYCWFGG-NPLPDNLKKYIKTWREQCPDYEIIEWNEHNY----DVSKNVFMREA 55 M K I CW G P +++ + + ++ D+++I + +NY D+ + R Sbjct: 66 MRQKYIFICWLQGIEKAPYIVQQCVASVKKNSGDFKVIIIDGNNYKEWVDIPDFLIKRWQ 125 Query: 56 YTKKNFAYVSDYARLDIIYTYGGFYLDTDVELLKSLD 92 K A+ SD RL ++ YGG ++D V + + Sbjct: 126 EGKMLDAWFSDILRLFLLCKYGGLWIDATVYMFDKVP 162
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 34.3 bits (78), Expect = 0.002 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 226 IPKKDLSPSELAAAQAYWSQKQGRGARPSDY-RPTPAPGRRKAPIPDVTPNPGQGHQPD- 283 IP+ DL+P A A + P++ P PG R P PD NP D Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDG 369 Query: 284 NGGYHPAPPRPNDASQNKHQRDEFKGK 310 G P P D +H+++ +G+ Sbjct: 370 QPGTRPDSPAVPDRPNGRHRKERKEGE 396
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 246 bits (630), Expect = 7e-83 Identities = 82/323 (25%), Positives = 144/323 (44%), Gaps = 34/323 (10%) Query: 1 MKKVFFLMAMVVSLVMIAGCDKSANPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MI 59 MKK+ L+ + +S +++ C Q + VV + + +TK ++GD D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 QSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLE----AWARDLDPNLKKSKVNVFEASKP 115 G H +EP DV +ADL Y+ LE AW L N KK++ + A Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFA--- 117 Query: 116 LTLDRVKGLEDMEVTQGIDPATLY--------DPHTWTDPVLAGEEAVNIAKELGHLDPK 167 V+ G+D L DPH W + A NIAK+L DP Sbjct: 118 -------------VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPN 164 Query: 168 HKDSYTKKAKAFKKEAEQLTEEYTQKFKKVR--SKTFVTQHTAFSYLAKRFGLKQLGISG 225 +K+ Y K K + + ++L +E KF K+ K VT AF Y +K +G+ I Sbjct: 165 NKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWE 224 Query: 226 ISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKT---LSPLEA 282 I+ E+E +P Q+K + + +++ V ++F E +V+ + +++ T + + Sbjct: 225 INTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAE 284 Query: 283 APSGNKTYLENLRANLEVLYQQL 305 +Y ++ NL+ + + L Sbjct: 285 QGKEGDSYYSMMKYNLDKIAEGL 307
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 35.0 bits (80), Expect = 0.002 Identities = 8/29 (27%), Positives = 9/29 (31%) Query: 1571 PQPEEPSPNQPTPPQPPIETIEPPVPASI 1599 QP +P P PI P I Sbjct: 61 VQPPPEPVVEPEPEPEPIPEPPKEAPVVI 89
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.1 bits (104), Expect = 1e-06 Identities = 51/253 (20%), Positives = 90/253 (35%), Gaps = 31/253 (12%) Query: 419 VIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAI 478 ++G++ A++ + R + R + + + G +G GK +A+ L Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPF 191 Query: 479 VRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVIT 538 V ++M+ S+L G G + T R + + LDEI T Sbjct: 192 VAINMAAIPRDLIESELFGHEKG--AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQT 249 Query: 539 LLLQVLDDGRLTDGQGNTINFKNTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPE 598 LL+VL G T G T + I+A +N KDLK FR + Sbjct: 250 RLLRVLQQGEYTTVGGRTPIRSDVRIVAATN-------------KDLKQSIN-QGLFRED 295 Query: 599 FLNRFNGV-IEFSHLS--KDDLSEIVDLMLDEVNQTIGKKGIDLVVDENVKSHLIELGYD 655 R N V + L +D+ ++V + + + G D+ + + Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK-EGLDVKRF--DQEALELM--KAHP 350 Query: 656 EAMGVRPLRRVIE 668 VR L ++ Sbjct: 351 WPGNVRELENLVR 363
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 38.0 bits (88), Expect = 3e-07 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Query: 1 MYNLLLTILLVLSVLLIISIFMQPQKNPSSNV-FDSSGSEALFERSKARGFEAFMQRFTG 59 MY LL + L++++ L+ I +Q K F + S LF + G FM R T Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLF---GSSGSGNFMTRMTA 57 Query: 60 VLVFFWLLIGLVLSILSSH 78 +L + +I LVL ++S+ Sbjct: 58 LLATLFFIISLVLGNINSN 76
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 114 bits (287), Expect = 1e-30 Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 9/341 (2%) Query: 15 LVMPFMVLYVEQLGAPSNKVEWYAGLSVSLSALSSALVAPLWGRLADKYGRKPMMVRAGL 74 L+MP + + L SN V + G+ ++L AL AP+ G L+D++GR+P+++ + Sbjct: 23 LIMPVLPGLLRDLV-HSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 75 MMTFTMGGLAFIHSVTGLLILRILNGIFAGYVPNSTALIASQAPQEESGYALGTLATGVT 134 +A + L I RI+ GI + A IA +E G ++ Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 135 GGMLIGPLLGGLLAEWFGIREVFLLVGTILLISTLMTIFMVKEDFKPISN---EETMPTT 191 GM+ GP+LGGL+ F F + ++ L F++ E K E + Sbjct: 142 FGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPL 200 Query: 192 EVFKSVKSLQILIGLFVTSMIIQISAQSIAPILTLYIRHLGQTENLMFVSGLIVSGMGFS 251 F+ + + ++ L I+Q+ Q A + ++ + G+ ++ G Sbjct: 201 ASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI--GISLAAFGIL 258 Query: 252 SILSSPKL-GRIGDRIGNHRLLLLALLYSFLMYVLCSLAQTSLQLGVIRFLYGFGTGALM 310 L+ + G + R+G R L+L ++ Y+L + A I L G G M Sbjct: 259 HSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGM 317 Query: 311 PSINSILTKIAPRQGLSRIFSYNQMFSNLGQVLGPFVGSAV 351 P++ ++L++ + ++ ++L ++GP + +A+ Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Score = 52.9 bits (127), Expect = 8e-10 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 8/188 (4%) Query: 197 VKSLQILIGLFVTSMIIQISAQSIAPILTLYIRHLGQTENLMFVSGLIVSGMGFSSILSS 256 +K + LI + T + + I P+L +R L + ++ G++++ + Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 257 PKLGRIGDRIGNHRLLLLALLYSFLMYVLCSLAQTSLQLGVIRFLYGFGTGALMPSINSI 316 P LG + DR G +LL++L + + Y + + A L + R + G TGA + Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAY 119 Query: 317 LTKIAPRQGLSRIFSYNQMFSNLGQVLGPFVG---SAVSIHLGFRWVFFVTSFIVLANFV 373 + I +R F + G V GP +G S H FF + + NF+ Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAP----FFAAAALNGLNFL 175 Query: 374 WCFINFRK 381 + Sbjct: 176 TGCFLLPE 183
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 33.3 bits (76), Expect = 0.001 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 17/137 (12%) Query: 3 FKSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTETEQIVFIDTPG 62 + SG + LG + G + N ++ ++ I T+ + E ++ IDTPG Sbjct: 25 YNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS-------FQWENTKVNIIDTPG 77 Query: 63 IHKPKTALGDFMVESAYSTLREVETVLFMVPADEKRGKGDDMIIERLKAAKIPVILVINK 122 H DF+ E Y +L ++ + ++ A + ++ L+ IP I INK Sbjct: 78 -HM------DFLAE-VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINK 129 Query: 123 IDK--VHPDQLLEQIDD 137 ID+ + + + I + Sbjct: 130 IDQNGIDLSTVYQDIKE 146
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 29.3 bits (65), Expect = 0.007 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Query: 31 NKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEVDISFDEEDLAENPELAEMLED 90 NKE+A F+ N + LE + D+P ++L+ S+ EE+LA++P +A +E+ Sbjct: 298 NKELAKEFLENYLLTDEGLEAVNKDKPLGAVALK-------SY-EEELAKDPRIAATMEN 349
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 624 bits (1610), Expect = 0.0 Identities = 180/671 (26%), Positives = 301/671 (44%), Gaps = 65/671 (9%) Query: 9 KTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAAT 68 K NIG++AHVDAGKTT TE +LY +G I ++G +G ++ D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAQWDGHRVNIIDTPGHVDFTIEVQRSLRVLDGAVTVLDAQSGVEPQTETVWRQATEYGV 128 + QW+ +VNIIDTPGH+DF EV RSL VLDGA+ ++ A+ GV+ QT ++ + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFANKMDKIGADFLYSVQSLHDRLQANAHPIQLPIGSEDDFRGIIDLIKMKAEIYTN 188 P I F NK+D+ G D Q + ++L A +IK K E+Y N Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEI------------------VIKQKVELYPN 163 Query: 189 DLGTDILEEDIPAEYVDQANEYREKLVEAVADTDEDLMMKYLEGEEITNEELMAAIRKAT 248 T+ E + + V + ++DL+ KY+ G+ + EL Sbjct: 164 MCVTNFTESE---------------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRF 208 Query: 249 INVEFYPVLCGSAFKNKGVQLMLDAVIDYLPSPLDIPAIKGINPDTDEEETRPASDEEPF 308 N +PV GSA N G+ +++ + + S + Sbjct: 209 HNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSEL 249 Query: 309 AALAFKIMTDPFVGRLTFFRVYSGVLNSGSYVLNTSKGKRERIGRILQMHANSRQEIETV 368 FKI RL + R+YSGVL+ V + K K +I + +I+ Sbjct: 250 CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKA 308 Query: 369 YAGDIAAAVG----LKDTTTGDSLTDEKSKVILESIEVPEPVIQLMVEPKSKADQDKMGI 424 Y+G+I L GD+ + E IE P P++Q VEP ++ + Sbjct: 309 YSGEIVILQNEFLKLNS-VLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLD 363 Query: 425 ALQKLAEEDPTFRVETNVETGETVISGMGELHLDVLVDRMKREFKVEANVGAPQVSYRET 484 AL ++++ DP R + T E ++S +G++ ++V ++ ++ VE + P V Y E Sbjct: 364 ALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME- 422 Query: 485 FRASTQARGFFKRQSGGKGQFGDVWIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGL 544 R +A + + + + +P G G ++E+++ G + + F AV +G+ Sbjct: 423 -RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGI 481 Query: 545 VESMANGVLAGYPMVDVKAKLYDGSYHDVDSSETAFKIAASLALKEAAKSAQPAILEPMM 604 G L G+ + D K G Y+ S+ F++ A + L++ K A +LEP + Sbjct: 482 RYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 605 LVTITAPEDNLGDVMGHVTARRGRVDGMEARGNTQVVRAFVPLAEMFGYATVLRSATQGR 664 I AP++ L + + + N ++ +P + Y + L T GR Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 665 GTFMMVFDHYE 675 + Y Sbjct: 601 SVCLTELKGYH 611
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.1 bits (62), Expect = 0.022 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 119 RGTFIIDP--DGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHTGEVCPAKWKEGAETL 176 R II D + GI TL++ +RA Y+ + ++ + Sbjct: 137 RVQAIIYGLEDSGRTYTADDDKGI----PTLVEFLRAGYYLGFYNKQLSYLNTPQLKNEC 192 Query: 177 TPSLDLV 183 P++ + Sbjct: 193 LPAMKAI 199
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 30.0 bits (67), Expect = 0.025 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 242 GGQVIETVGIENMIGTLYT--EGPKLMAQIEEHTKSYDIDIIKSQ 284 G ++ G+E +GTL E P + A +E+ + IDI+K Q Sbjct: 205 NGSAMQIRGVEKALGTLKITHENPNVEANYDENAAALSIDIVKKQ 249
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.008 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 14/219 (6%) Query: 33 LKKDFNNINRQLKMDPDNVDLLNRKLVNLQEQARVGAIKIAELKKQQKALGESEVGSAQW 92 LK ++++ K D+ D L +L N +E+ R ++E + + L + + Sbjct: 69 LKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKA 128 Query: 93 NKLQLEIAK--VESQMKIVDKAMESTKKHIEDVGDPKSILNLNKELDNVAKELDIVNQKL 150 + + + + + + + + +N + K L+ L Sbjct: 129 LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 188 Query: 151 ELDPDNVELAEQKMKLLGKQSELAGDKVQELK------------KKQAALGDEKIGTEEW 198 E +E A + ++ K + A+ + + Sbjct: 189 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 248 Query: 199 RQLQNEIGQAEVEVLKIDRAMDILGESSRSATGDIKEAT 237 + L+ E E ++++A++ S + + IK Sbjct: 249 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 287
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.9 bits (62), Expect = 0.019 Identities = 7/19 (36%), Positives = 14/19 (73%) Query: 10 EKLGISRATLTRYRKKLGI 28 + LG++R TL + ++LG+ Sbjct: 457 DLLGLNRNTLRKKIRELGV 475
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 27.8 bits (61), Expect = 0.006 Identities = 14/45 (31%), Positives = 24/45 (53%) Query: 12 LEAGSTLEIYLTKNDLEHIANGYEVTLDIKPNETVNKIVIKPSFV 56 L A +++L + L H G+E +IKPN+ + I +P+ V Sbjct: 317 LGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHV 361
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 27.3 bits (60), Expect = 0.024 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%) Query: 81 LEEFQNAISELLEVLEPDDKKIFHLRWG----EHTGYDWIQVWHI 121 LE F ++ + DD+ F +RWG + G W +++ Sbjct: 288 LEGFTASLKSNPKAEGYDDQIYFLIRWGTWDNKILGMSWFNSYNV 332
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 24.4 bits (53), Expect = 0.049 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 6/35 (17%) Query: 39 NALKYQLRYRKKNGLEDLKKARKNLDWLIEEMEKE 73 N Y +Y K LKK+ + + + + E+E Sbjct: 382 NVQSYYKKYNK------LKKSEEAANEQLLQNEEE 410
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 24.9 bits (54), Expect = 0.015 Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 18 FIELSKEFNKKARELEELAHELKSFDFEGE 47 F+ ++ +F + A ++EE + K ++G+ Sbjct: 323 FLSIADKFKR-ANKIEEYSQRFKKLGYDGD 351
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.3 bits (63), Expect = 0.043 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 168 PLDNAKAYQAKVSSGKVVIAGSSSVTPVMEKIKEAYHKVNAKVDVEIQQSDSSTGITSAI 227 P N ++Y K + K + + +E + + + V I +D+ I Sbjct: 379 PSQNVQSYYKKYNKLKKSEEA---ANEQLLQNEEELNYLYS-VLTNINNADNYDEIEEIK 434 Query: 228 DGSADIG-MASRELDKTESSKGVKA-TVIATDGIAVVVNKKNKVNDLSTKQV 277 + G + +++ K++ SK K I+ DGI + V K N ND T + Sbjct: 435 KELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKF 486
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.9 bits (98), Expect = 2e-07 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 18 QNTGWT---ALTSPVYDRKWTESDLEKNLAN--GMSFFVAEVDDKIAGVLDFGPYYPFPA 72 +N WT S Y +++ + D++ + G + F+ +++ G + + Sbjct: 31 ENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNW---- 86 Query: 73 GKHVATFGILIAEPYQGQGLGKALLKALLTEAKAQGYIKIAMHVMGNNSRAISLYQKYGF 132 + I +A+ Y+ +G+G ALL + AK + + + N A Y K+ F Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146 Query: 133 T 133 Sbjct: 147 I 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.008 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 9/83 (10%) Query: 49 GIGKTSIASAIAGTTKYAFRTFNATVDSKKRLQEIAEEAKFSGGLVLLLDEIHRLDKTKQ 108 I + I S + G K AF A S R ++ + G L LDEI + Q Sbjct: 198 AIPRDLIESELFGHEKGAFTG--AQTRSTGRFEQ-------AEGGTLFLDEIGDMPMDAQ 248 Query: 109 DFLLPLLENGNIIMIGATTENPF 131 LL +L+ G +G T Sbjct: 249 TRLLRVLQQGEYTTVGGRTPIRS 271
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 26.8 bits (59), Expect = 0.048 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 51 NLDKIAEYFRATPTQLFGTIKEIELENSVLETDTYTSKADHILKSVKEFYE 101 +D IAE A Q T+KE E++ + + A +++++ Y+ Sbjct: 60 TVDTIAERLLAIGGQPVATVKEY-TEHASITDGGNETSASEMVQALVNDYK 109
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 37.7 bits (87), Expect = 1e-04 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 2/80 (2%) Query: 366 VVPNVVIPKQPTPPSTEKVTPEAEKPVPEKPVEPKFVTPTLKTYTPAQPKVKPHVSIPEK 425 V P + P Q P E V +P P + K +PK KP + E+ Sbjct: 50 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 109 Query: 426 INYSVSVHPVLVPAANPSKA 445 V PV A+P + Sbjct: 110 PKRDVK--PVESRPASPFEN 127 Score = 34.2 bits (78), Expect = 0.001 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 1/107 (0%) Query: 365 DVVPNVVIPKQPTPPSTEKVTPEAEKPVPEKPVEPK-FVTPTLKTYTPAQPKVKPHVSIP 423 V P +P P P E PV + +PK P QPK Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVES 119 Query: 424 EKINYSVSVHPVLVPAANPSKAVIDEAGQSVNGKTVLPNAELNYVAK 470 + + P + ++ + A +G L + Y A+ Sbjct: 120 RPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPAR 166
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.036 Identities = 12/74 (16%), Positives = 26/74 (35%) Query: 305 HLRYSQWRHRCMSSNSKDAYKDLVRAVDNWHVEIFNYFDKRLTNAYTESINSIIRQVERM 364 W + + ++ DL V +W E+F F + + S ++ E Sbjct: 184 DPGAMSWFLQRLEADEDGNAVDLQLWVSDWLKEMFLDFKRAERPGRSISEENLPHMFEHW 243 Query: 365 GRGYSFDALRAKIL 378 R S+ + + + Sbjct: 244 ARYLSYLQVIQRAV 257
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 28.9 bits (64), Expect = 0.024 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 22/125 (17%) Query: 153 QKEWERLSGIAVSQQTKENTQTALKSFPKGTILVAKSSHTRI-FQDLDEKEIIVGGPYQA 211 +WE+ V + + AL+ + K + ++ S TR F D + Y+ Sbjct: 57 AIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYK- 115 Query: 212 TGGMGDTLCGMIAGMLAQFKEA---SPLDKVSVGVYLHSAIAQGLSKEAYVVLPTTISDE 268 + A + +DK Y S +KE IS E Sbjct: 116 -----------------NLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLE 158 Query: 269 IPKEM 273 E+ Sbjct: 159 KFNEL 163
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 28.2 bits (63), Expect = 0.033 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 1/27 (3%) Query: 102 QSGARL-VYAVDVGTNQLVWKLRQDHR 127 Q R+ + +D+ + + + R D R Sbjct: 35 QLSGRVGMIEMDLASGRTLTAWRADER 61
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 85.7 bits (212), Expect = 4e-24 Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 1 MKKSERLNLIKQIVLNHAVETQHELLRRLEAYGVTLTQATISRDMNEIGIIKVPSAKGRY 60 M K +R I++I+ + +ETQ EL+ L+ G +TQAT+SRD+ E+ ++KVP+ G Y Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 IYGLSNENDPIFTTAVAKPIKTSILSISDKLLGLEQFININVIPGNSQLIKTFIMSHCQE 120 Y L + + + + + + + I I + +PGN+Q I + + E Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSA----SHLIVLKTMPGNAQAIGALMDNLDWE 116 Query: 121 HIFSLTADDNSLLLIAKSEADADHIRQSMIAML 153 I D+++L+I ++ D +++ ++ +L Sbjct: 117 EIMGTICGDDTILIICRTHDDTKVVQKKILELL 149
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 28.7 bits (64), Expect = 0.035 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 15/65 (23%) Query: 207 KTFSKWL----DNFV-ESAQTR---KIAEIG--ISYCGKA----DMANNFREKLAVLGAP 252 K + WL N+ + T+ + I + + GKA + +N+F E+ GA Sbjct: 556 KKYYLWLKEVFKNYSFDINLTQEIDSMCGINEVVLWFGKALNILNTSNSFVEEYQDSGA- 614 Query: 253 ISVLE 257 IS++ Sbjct: 615 ISLIS 619
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 125 bits (315), Expect = 2e-41 Identities = 84/91 (92%), Positives = 88/91 (96%) Query: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARK 60 MANKQDLIAKVAEATELTKKDSAAAVDAVF+AV+ YLA+GEKVQLIGFGNFEVRERAARK Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 61 GRNPQTGAEIEIAASKVPAFKAGKALKDAVK 91 GRNPQTG EI+I ASKVPAFKAGKALKDAVK Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 1e-17 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 3 TVLVVQGDDETIELLRSYLEGALYKVVMASDGEEAFSLFQQHQIDLAIIDITLPKIDGYE 62 T+LV D +L L A Y V + S+ + DL + D+ +P + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 LTRLIRQ-DSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFN---SLEVLARINSQLRR 118 L I++ +P+++++A+ T M I GA D++ KPF+ + ++ R ++ +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 33.8 bits (77), Expect = 3e-04 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 74 TKSAEYSYHVDVKTGQILERDMDNNGFSKSTSQSSSSSSQKSHKIS-QEEAKKIAFKDAN 132 A HV+ L + N ++ ++ S Q++ I+ Q+ A ++ + Sbjct: 102 CMGAVLVAHVNDGELSSLSGTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVTKERPA 161 Query: 133 IEESEVSNLKIKEEIENGKSVYDIDFVDLKNK-NEVDYQIDAETGKIIER 181 EE + + L I + E + Y+++ L Y IDA GK++ + Sbjct: 162 AEEGKPTRLVIYPDEETPRLAYEVNVRFLTPVPGNWIYMIDAADGKVLNK 211
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.018 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%) Query: 27 EPG----QVVVLLGPSGSGKSTLIRTMNALESIDDGSL 60 EPG VVL G G GKSTLI T+ L+ D Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHF 627
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 2e-23 Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 1/134 (0%) Query: 3 KILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLE 62 IL+ DD+ I ++ L++ GY+ + A DL++ D+++P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VAKEVRKT-SHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 + ++K +P++++SA+++ + E GA DY+ KPF EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 IETAVAEESAQNAS 135 + + ++S Sbjct: 125 RPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 42/191 (21%) Query: 252 DETNRMMRMISDLL--SLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVY 309 + M+ +S+L+ SL + L E+T +++ +F+ ++ ++ Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFE---DRLQFENQIN 247 Query: 310 EIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKY----SPDGGKITVNLRTTKTQMILSI 365 + D + + ++ ++ N +K+ P GGKI + + L + Sbjct: 248 PAIMDVQVPPM-----------LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEV 296 Query: 366 SDQGLGIPKKDLPLIFDRFYRVDKARSRKQGGTGLGLSIAKEIVKQHKGF---IWAKSEY 422 + G K + TG GL +E ++ G I + Sbjct: 297 ENTGSLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 423 GKGSTFTIVLP 433 GK +++P Sbjct: 339 GKV-NAMVLIP 348
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 50.1 bits (119), Expect = 4e-08 Identities = 43/334 (12%), Positives = 115/334 (34%), Gaps = 21/334 (6%) Query: 167 VLKYKTRKKETQSKLEQTQGNLDRLEDIIYELDMQVQPLEKQASIAKRFLVLDEERQGLH 226 + K + ++ L + + LE +L+ ++ + + Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNF--------STADSAKIKT 145 Query: 227 LSILIEDILQHQSDLTTVEEKLLTVRKELATYYQQRQSLEDENQSLKQKRHHLSEEIEAK 286 L + ++DL E + + + ++LE E +L+ ++ L + +E Sbjct: 146 LEAEKAALAARKADLEKALEGAMNFSTADSA---KIKTLEAEKAALEARQAELEKALEGA 202 Query: 287 QLALLDVTKLKSDLERQIDLIRLESNQKAEKKEEAGQRLAELEIKAKDCSDQITQKNIEL 346 + LE + A +K + + L + S +I E Sbjct: 203 MNFSTADSAKIKTLEAEKA-------ALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 255 Query: 347 TTLSEKIAQIRSEIVSTESSLERFSTNPDQI---IEKLREDFVTLMQEEADTSNALTALL 403 L + A++ + + S + L + L + + +L Sbjct: 256 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLR 315 Query: 404 ADIENQKQASQAKSQEIQEVSKNLEVLKSNAKVALERFEAAKKNVRQLLSHYQDLGQTLQ 463 D++ ++A + E Q++ + ++ +++ + +A+++ +QL + +Q L + + Sbjct: 316 RDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNK 375 Query: 464 NLEGEYKNQQSILFDHLDEIKSKQARISSLESIL 497 E ++ + L + K + + S L Sbjct: 376 ISEASRQSLRRDLDASREAKKQVEKALEEANSKL 409 Score = 42.7 bits (100), Expect = 8e-06 Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 17/261 (6%) Query: 674 KPELDNLKKELKQAQSKQLIQEKEVATLLEQLKEKQETLAQLKNDGEQARLEEQRADIEY 733 K +L K L + SK E A L + L+ + E+ Sbjct: 98 KEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARK 157 Query: 734 QQLSEKLADLNKLYNGLQLSSGALEQTTSENEKNRLEKELEQFAIKKEELTTSIAQIKED 793 L + L ++ + + T E EK LE + E Sbjct: 158 ADLEKALEGAMN-----FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAK 212 Query: 794 KDSIQEKVNNLTTLLSEAQLEERDLLNEQKFERANCTRLEITLSEIKRDISNLQTLLSHQ 853 +++ + L ++ + +N + A LE + ++ + L Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL------- 265 Query: 854 DSQLDKEELPRIEKQLLQVNNRRENDEEKLVSLRFELEDCEAALDDLAASLAKEGQKNES 913 ++ L + + + E + +L E D E L A+ + ++ Sbjct: 266 -----EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 914 LIRQQAQLESQCEQLSQQLMI 934 + QLE++ ++L +Q I Sbjct: 321 SREAKKQLEAEHQKLEEQNKI 341 Score = 31.6 bits (71), Expect = 0.021 Identities = 30/242 (12%), Positives = 87/242 (35%), Gaps = 5/242 (2%) Query: 760 TTSENEKNRLEKELEQFAIKKEELTTSIAQIKEDKDSIQEKVNNLTTLLSEAQLEERDLL 819 + + ++++ ++F I+ L + + + ++++ + LT LS A+ + R Sbjct: 46 RSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKND 105 Query: 820 NEQKFERANCTRLEITLSEIKRDISNLQTLLSHQDSQLD-----KEELPRIEKQLLQVNN 874 + + LE +++++ + + +++ K L + L + Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 875 RRENDEEKLVSLRFELEDCEAALDDLAASLAKEGQKNESLIRQQAQLESQCEQLSQQLMI 934 N + LE +AAL+ A L K + + + E L Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 935 FSRQLSEDYQMTLDEAKVKANVLEDILMAREQLKSLQAKIKALGPVNIDAIAQFEEVHER 994 L + + ++ + + ++ + + L++ QA+++ ++ + Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 995 LT 996 L Sbjct: 286 LE 287
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 120 bits (301), Expect = 1e-32 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 22/226 (9%) Query: 34 YGVIWNTLGVPMANLITYFAQHQGLGFGVAIIIVTVIVRVVILPLGLYQSWKASYQA-EK 92 YG +W + P+ L+ + G +G +III+T IVR ++ PL KA Y + K Sbjct: 330 YGWLW-FISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPLT-----KAQYTSMAK 382 Query: 93 MAYFKPLFEPINERLRNAKTQEEKLAAQTELMTAQRENGLSMFGGIGCLPLLIQMPFFSA 152 M +P + + ERL + +K E+M + ++ GG C PLLIQMP F A Sbjct: 383 MRMLQPKIQAMRERLGD-----DKQRISQEMMALYKAEKVNPLGG--CFPLLIQMPIFLA 435 Query: 153 IFFAARYTPGVSSATFLG----LNLGQKSLTLTVIIAILYFVQSWLSMQGVPDEQRQQMK 208 +++ + + A F L+ L +++ + F +S V D +Q++ Sbjct: 436 LYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKI- 494 Query: 209 TMMYLMPIMMVFMSISLPASVALYWFIGGIFSIIQQLVTTYVLKPK 254 M MP++ + P+ + LY+ + + +IIQQ + L+ + Sbjct: 495 --MTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKR 538
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.002 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Query: 110 EIIRAALLAVDHGQWEAARALGLKTPTIYR-----GIIIPQATRIA 150 +I AAL A Q +AA LGL T+ + G+ + +++R A Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSRSA 484
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.6 bits (110), Expect = 3e-07 Identities = 36/214 (16%), Positives = 71/214 (33%), Gaps = 22/214 (10%) Query: 19 EQILAELEEANRLRKLREEELYQKEQEAKEAARRTAQLMADYEAQRLKDE-REARAKALE 77 E E + + + E Q + AKEA E + E +E + + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 78 TKQRLEEQEKARIEAKLLAEAAREEERRQAEQALASQEEQVINQGMEPSRELDSGSKSSE 137 +E++EKA++E E +E + ++ + ++ + + EP+RE D E Sbjct: 1102 ETATVEKEEKAKVE----TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 138 FRTTENVPDIDLKADKTDVATAVPNQETEEIFLVRATDIPTEGENVKLGEISELEPVAKE 197 ++ N AD A + + + N + P + Sbjct: 1158 PQSQTNTT-----ADTEQPAKETSSNVEQPV----TESTTVNTGNSVVENPENTTPATTQ 1208 Query: 198 PIRVEDLSKEEEGIALSAKNKHNKRERRQKADNV 231 P + S + + ++R R NV Sbjct: 1209 PTVNSESSNKPK--------NRHRRSVRSVPHNV 1234
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.002 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 88 ITSLSIHPDFKGQGIGTALLAAMKDLVVSQERDGISLTCHDDLIS---FYEMNGFK 140 I +++ D++ +G+GTALL + G+ L D IS FY + F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 1e-18 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 3 VLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAYLNDIKIQLVLLDIHIKEGNGL 62 +L+ +DD + + L + Y ++ T++ ++ LV+ D+ + + N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPF 105 +LL ++ + V+V+SA N T +A G DYL KPF Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 164 bits (417), Expect = 2e-50 Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 43/332 (12%) Query: 1 MAVLILGGAGYIGSHMVDQLITQGKEKVIVVDNLVTGH-------RQAV--HSDAIFYEG 51 M L+ G AG+IG H+ +L+ G +V+ +DNL + R + F++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 52 DLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDI 111 DL+D+ M +F + V V S+ENP Y D+N G + +LE I Sbjct: 60 DLADREGMTDLFASGH-FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 112 KNIVFSSTAATYGIPEQVPILETAP-QNPINPYGESKLMMETIMKWADQAYGIKFVALRY 170 ++++++S+++ YG+ ++P +P++ Y +K E + YG+ LR+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 171 FNVAGDKPDGSIGEDHKPETHLLPIILQVAQGVRDKIMIFGDDYNTPDGTNVRDYVHPFD 230 F V G P G +P+ L + +G I ++ G RD+ + D Sbjct: 179 FTVYG--PWG------RPDMALFKFTKAMLEG--KSIDVYN------YGKMKRDFTYIDD 222 Query: 231 LADAHILAVDYLRQGNES---------------NVFNLGSSTGFSNLQMLEAARRITGKE 275 +A+A I D + + V+N+G+S+ + ++A G E Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 276 IPAQKAARRPGDPDTLIASSEKARQILGWEPK 307 +PGD A ++ +++G+ P+ Sbjct: 283 AKKNMLPLQPGDVLETSADTKALYEVIGFTPE 314
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 5e-04 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDISEGELKIDGEVVNDKSPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ S+ I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.3 bits (102), Expect = 5e-07 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 215 LQHILDTSDTSAIIKALWQEQGNLAKTAKALFIHRNSLQYKLDKFTQSSGLNLK 268 +L + I+ AL +GN K A L ++RN+L+ K+ + G+++ Sbjct: 429 YDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVY 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.0 bits (231), Expect = 4e-24 Identities = 33/123 (26%), Positives = 62/123 (50%) Query: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61 ILV +D+ + + + L + Y V SN ++++ + D+++ DV+MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 FLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRANR 121 L ++ + +L+++A++ I + GA DYL KPF+ EL+ I L R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 QVS 124 + S Sbjct: 125 RPS 127
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 376 bits (966), Expect = e-133 Identities = 142/311 (45%), Positives = 204/311 (65%), Gaps = 7/311 (2%) Query: 3 KIVVALGGNALGN-----SPEEQLRLVKHTAKSLVALIKKGHEIVVSHGNGPQVGAINLG 57 ++V+ALGGNAL S EE + V+ TA+ + +I +G+E+V++HGNGPQVG++ L Sbjct: 4 RVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLH 63 Query: 58 MNFAAESGQGTNFPFPECGAMSQGYIGYHLQQSLLNELRQEGINKEVATIITQIEVDESD 117 M+ + P GAMSQG+IGY +QQ+L NELR+ G+ K+V TIITQ VD++D Sbjct: 64 MDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKND 123 Query: 118 QAFSAPTKPIGTFYDKETSEKIAIEKGYTFVEDAGRGYRRVVASPEPKKIIEINSIKTLI 177 AF PTKP+G FYD+ET++++A EKG+ ED+GRG+RRVV SP+PK +E +IK L+ Sbjct: 124 PAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLV 183 Query: 178 ENDTLVIAGGGGGIPVI-NKGGYEGIAAVIDKDKSSALLAGELAADQLIILTAVDYVYTQ 236 E +VIA GGGG+PVI G +G+ AVIDKD + LA E+ AD +ILT V+ Sbjct: 184 ERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALY 243 Query: 237 FGKENQKALTEVNENQMIDYVNQGEFAKGSMLPKVIACMSFLDHNPKGTALITSLNGLED 296 +G E ++ L EV ++ Y +G F GSM PKV+A + F++ + A+I L + Sbjct: 244 YGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE-RAIIAHLEKAVE 302 Query: 297 ALDGKLGTRIT 307 AL+GK GT++ Sbjct: 303 ALEGKTGTQVL 313
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 6e-06 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 32/175 (18%) Query: 256 NIIKGLGTYF----SVKNESTMALKDIFQIVLSYTRSIIQFRHQDIIILENNKCNLIISN 311 ++ L N ++L D +V SY + + +D + EN N I + Sbjct: 195 EMLTSLSELMRYSLRYSNARQVSLADELTVVDSYL-QLASIQFEDRLQFENQ-INPAIMD 252 Query: 312 YYYLLTIISNIVLNAVE-AIDKQKK-GTISVHTEELEDFIKIEISDNGPGIPDKMKHMIF 369 ++ +V N ++ I + + G I + + + +E+ + G K Sbjct: 253 VQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST- 311 Query: 370 KPGFSTKFDANGDIYRGIGLSHVR----ILMEEQYQGTITVCPNQPNGTTFTLLF 420 G GL +VR +L + Q ++ + +L Sbjct: 312 ----------------GTGLQNVRERLQMLYGTEAQIKLS---EKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 4e-14 Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Query: 5 IIDDDPTITMILQDIIE-EDFNNTVVRVNNVSSKAYNELLIADVDIVLIDLLMPILDGVT 63 + DDD I +L + + V +N ++ + + D D+V+ D++MP + Sbjct: 8 VADDDAAIRTVLNQALSRAGY--DVRITSNAAT-LWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LVQKIYKQRSDLKFIMISQVKDNDLRQEAYKAGIEFFINKPINIIEVKSVVKRVTDTI-- 121 L+ +I K R DL +++S +A + G ++ KP ++ E+ ++ R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 ---EMQKKLNTIQNLLENTPSYQK 142 +++ L+ + + Q+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQE 148
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 128 bits (324), Expect = 6e-41 Identities = 58/149 (38%), Positives = 95/149 (63%), Gaps = 4/149 (2%) Query: 1 MNKKETRHQLIRSLVSETKVRTQHELRELLEKNGVSVTQATLSRDMKELNLIKVNESSDN 60 MNK + RH IR +++ ++ TQ EL ++L+K+G +VTQAT+SRD+KEL+L+KV N Sbjct: 1 MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKV---PTN 56 Query: 61 ATETYYEIHSISQKRWEERLRFYMEDALVMLFPVQNQIVLKTLPGLAQSFGSILDSILLP 120 Y + + + +L+ + DA V + + IVLKT+PG AQ+ G+++D++ Sbjct: 57 NGSYKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWE 116 Query: 121 EILATVCGDDTCLIICNNSEEAQKCFEKL 149 EI+ T+CGDDT LIIC ++ + +K+ Sbjct: 117 EIMGTICGDDTILIICRTHDDTKVVQKKI 145
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 570 bits (1471), Expect = 0.0 Identities = 193/408 (47%), Positives = 275/408 (67%), Gaps = 8/408 (1%) Query: 6 PIHVFSEIGKLKKVMLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRNEG 65 PI++FSEIG+LKKV+LHRPG+E+ENL P ++ LFDDIP+LE A++EH+ FA L+N Sbjct: 7 PINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNNL 66 Query: 66 VEVLYLENLAAESL-TNQEIREQFIDEYIGEANVRGRATKKAIRELLLNIKDNKELIEKT 124 VE+ Y+E+L +E L ++ + +FI ++I EA ++ T +++ + +I K Sbjct: 67 VEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSS-LTIDNMISKM 125 Query: 125 MAGIQKSELPEIPSSEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGNGVSLNHMFSET 184 ++G+ EL SS L DLV F IDPMPN+ FTRDPFA+IGNGV++N MF++ Sbjct: 126 ISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKV 182 Query: 185 RNRETLYGKYIFTHHPEYGGKVPMVYEREETTRIEGGDELVLSKDVLAVGISQRTDAASI 244 R RET++ +YIF +HP Y VP+ R E +EGGDELVL+K +L +GIS+RT+A S+ Sbjct: 183 RQRETIFAEYIFKYHPVYKENVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSV 242 Query: 245 EKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTY 304 EKL +++FK F +LAF+ NR +MHLDTVFT +DY FT + +Y +TY Sbjct: 243 EKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVLTY 302 Query: 305 ENQD--LHIEEEKGDLADLLAKNLGVEKVELIRCGGDNLVAAGREQWNDGSNTLTIAPGV 362 +HI++EK + D+L+ LG K+++I+C G +L+ REQWNDG+N L IAPG Sbjct: 303 NPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAPGE 361 Query: 363 VIVYNRNTITNAILESKGLKLIKINGSELVRGRGGPRCMSMPFEREDL 410 +I Y+RN +TN + E G+K+ +I SEL RGRGGPRCMSMP RED+ Sbjct: 362 IIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 30.2 bits (68), Expect = 0.002 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 1 MPYQRAASLY-IRFSVFVIER-----NIKMEEEFDDNDEQDTIYAVLYDGKQPVSTGRFL 54 + ++ L+ +R F +R EFD D +T Y + + RF+ Sbjct: 12 LSETKSGELFTLRKETFK-DRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDNTVICSLRFI 70 Query: 55 PETQ 58 Sbjct: 71 ETKY 74
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 412 bits (1061), Expect = e-148 Identities = 147/314 (46%), Positives = 211/314 (67%), Gaps = 6/314 (1%) Query: 6 QKIVVALGGNAIL--STDASAKAQQEALINTSKSLVKLIKEGHDVIVTHGNGPQVGNLLL 63 +++V+ALGGNA+ S + + + T++ + ++I G++V++THGNGPQVG+LLL Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 64 QQAASDSEKN-PAMPLDTCVAMTEGSIGFWLQNALNNELQEQGIDKEVATVVTQVIVDEK 122 A + PA P+D AM++G IG+ +Q AL NEL+++G++K+V T++TQ IVD+ Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 123 DQAFTNPTKPIGPFLSEEDAKKQAQETGSKFKEDAGRGWRKVVPSPKPVGIKEASVIRRL 182 D AF NPTKP+GPF EE AK+ A+E G KED+GRGWR+VVPSP P G EA I++L Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 183 VDSGVVVISAGGGGVPVIEDANTKALKGVEAVIDKDFASQTLSELVDADLFIVLTGVDNV 242 V+ GV+VI++GGGGVPVI + +KGVEAVIDKD A + L+E V+AD+F++LT V+ Sbjct: 183 VERGVIVIASGGGGVPVILEDG--EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 Query: 243 FVNFNKPNQEKLEEVTVSQMKQYITENQFAPGSMLPKVEAAIAFVENKPESRAIITSLEN 302 + + ++ L EV V ++++Y E F GSM PKV AAI F+E RAII LE Sbjct: 241 ALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLEK 299 Query: 303 IDNVLAQNAGTQIV 316 L GTQ++ Sbjct: 300 AVEALEGKTGTQVL 313