>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 104 bits (260), Expect = 2e-28 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Query: 24 SLLIVDDDTAFLRRLARAMEARGFAVEIAESVAEGIAKAKTRPPKHAVIDLRLSDGSGLD 83 ++L+ DDD A L +A+ G+ V I + A V D+ + D + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 84 VIEAIRGRRDDTRMIVLTGYGNIATAVNAVKLGALDYLAKPADADDILAALIQRPGERVE 143 ++ I+ R D ++V++ TA+ A + GA DYL KP D +++ +I R + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI-GIIGRALAEPK 123 Query: 144 PPENPMSADRVR 155 + + D Sbjct: 124 RRPSKLEDDSQD 135 Score = 37.1 bits (86), Expect = 2e-05 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 1/68 (1%) Query: 124 PADADDILAALIQRPGERVEPPE-NPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRR 182 ++ + G+ + P + + I N + A L ++R Sbjct: 405 SQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRN 464 Query: 183 TLQRILAK 190 TL++ + + Sbjct: 465 TLRKKIRE 472
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 40.1 bits (93), Expect = 1e-05 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 27/173 (15%) Query: 236 ERELGDDPRFGEDVHLLRSQSERCRDILRRLTTLSSESEEHMRLLPLSSLIE----EVMA 291 E D + +++ E+ +D + L +E ++ L++ +V+ Sbjct: 36 EHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLE 95 Query: 292 PHREFGIEI--------ELKEQGDRASEPVGIRNAGILYGLGNLLENAVDYARK----KV 339 + E G EI E KE D + E N G + + +K K+ Sbjct: 96 IYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMN---SRGEKVPFASRFVFEKKRETPKL 152 Query: 340 TVTTEHTAERVRVTIE---DDGDGFSPDILARIGEPY-----VTRRQKDDSAG 384 + + A + E + G G S DI+++ + + DDS Sbjct: 153 IINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDS 205
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.037 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Query: 42 VLTIMGPSGSGKSTLLAFAGG---FLDPAFDVSGRILIDGKD 80 + + G G GKSTL+ G F D FD+ GKD Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG-----TGKD 634
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 27.8 bits (61), Expect = 0.034 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Query: 133 PLLSRIGANAHRLSAIAEEVTHVEDRSDQLHEQGLKDLFQRHGASNPMAYIIGSEIYGEL 192 P ++ G +R++ IAE+ ++D++ L + + NP+ + YGEL Sbjct: 457 PNMTNSGLRWYRVNEIAEKFKLIKDKA-------LVTVINKGYGKNPLTKNYNIKNYGEL 509 Query: 193 EKVVDRF 199 E+V+ + Sbjct: 510 ERVIKKL 516
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.9 bits (98), Expect = 2e-07 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 51 DEIAFAAVAGRELLGCI-FCKPEADCLYIGKLAVAPGRQGKGVGRMLIAAAEETARDLGL 109 + AF +G I I +AVA + KGVG L+ A E A++ Sbjct: 64 GKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 110 PALRLQT 116 L L+T Sbjct: 124 CGLMLET 130
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 106 bits (265), Expect = 1e-30 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 1/205 (0%) Query: 1 MRRTKADAEATRQKILCAAERMFYKKGVPNTTLEEVAKEAGVTRGAIYWHFANKTDLFLA 60 R+TK +A+ TRQ IL A R+F ++GV +T+L E+AK AGVTRGAIYWHF +K+DLF Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 LYEAVPLPHEDMIAREIETEAFDTLAIVESATSDWLTTLAADEQRQRILAIMLR-CDYDN 119 ++E ++ D L+++ L + +E+R+ ++ I+ C++ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 120 DMSAVLVRQREIEERHDALLELAFARALERGQLQEHWAPPTAARALRWMMMGLCTEWLLF 179 +M+ V QR + +E +E L AA +R + GL WL Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 180 GRRFDLVAQGSEALQSLFAGFRRVP 204 + FDL + + + L + P Sbjct: 182 PQSFDLKKEARDYVAILLEMYLLCP 206
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1147 bits (2969), Expect = 0.0 Identities = 553/1033 (53%), Positives = 746/1033 (72%), Gaps = 5/1033 (0%) Query: 1 MPSFFIDRPIFAWVVAIFIMIAGIIAIPLLPVSQYPDVAPPQISINTNYPGASSQDTYQS 60 M +FFI RPIFAWV+AI +M+AG +AI LPV+QYP +APP +S++ NYPGA +Q + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTRLIEDELNGVEGLLYFESSTSSSGSVSIDATFQPGTDPSQASVDIQNRVQRVEPRLPD 120 VT++IE +NG++ L+Y S++ S+GSV+I TFQ GTDP A V +QN++Q P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 PVRQQGVQVDEAGAGFLLIISLTSTDGSMDAIGLGDYLSRNVLSEIQRVPGVGRAQLFAT 180 V+QQG+ V+++ + +L++ S + + DY++ NV + R+ GVG QLF Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 ERSMRVWLDPDKMLGLNLTAADVTAAIQAQNAQIASGSIGAQPNPITQQVTAPVVIKGQL 240 + +MR+WLD D + LT DV ++ QN QIA+G +G P QQ+ A ++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 SSPEEFGAIVLRANADGSAVRLRDVARLEIGGESYTFSTRLNGSPSAAIAVQLSPSGNAM 300 +PEEFG + LR N+DGS VRL+DVAR+E+GGE+Y R+NG P+A + ++L+ NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 STSAAIKARMDELAEFFPEGLEYSIPYDTSPFVAVSIEKVLHTLVEAVGLVFLVMFLFLQ 360 T+ AIKA++ EL FFP+G++ PYDT+PFV +SI +V+ TL EA+ LVFLVM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NVRYTIIPTIVVPVALLGTCAVMLAMGFSINVLTMFGMVLAIGILVDDAIIVVENVERIM 420 N+R T+IPTI VPV LLGT A++ A G+SIN LTMFGMVLAIG+LVDDAI+VVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLTPKDATRKAMKQITGAVIGITLVLASVFIPMAFFPGAVGVIYRQFSLTMVVSILF 480 E+ L PK+AT K+M QI GA++GI +VL++VFIPMAFF G+ G IYRQFS+T+V ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SALLALSLTPALCASFLKQVPKGHHHAKRGFFGWFNRGFDRTSHGYTRAVGGIVRRTGRF 540 S L+AL LTPALCA+ LK V HH K GFFGWFN FD + + YT +VG I+ TGR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 MVIYLALLAGLGWAFLQLPSSFLPDEDQGFVIVMMQLPSEATANRTTEVIEQTETIFG-- 598 ++IY ++AG+ FL+LPSSFLP+EDQG + M+QLP+ AT RT +V++Q + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 QEKAVDTIVAINGFSFFGSGQNAGLAFVTLKDWSERDAD-NSAQSIAGRATMAMSQIKDA 657 ++ V+++ +NGFSF G QNAG+AFV+LK W ER+ D NSA+++ RA M + +I+D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 658 ISFALSPPAIQGLGTTGGFSFRLQDRAGLGQAALAEARDQLLDLASQSKV-LTGVRFEGM 716 + PAI LGT GF F L D+AGLG AL +AR+QLL +A+Q L VR G+ Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 717 PDAAQVSVNIDREKANTFGVTFADINSTISTNLGSSYVNDFPNAGRMQRVTVQADETKRM 776 D AQ + +D+EKA GV+ +DIN TIST LG +YVNDF + GR++++ VQAD RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 777 QTADLLNLNVRNSNGGMVPLSAFADVEWVKAPTQTVGYNGYPAVRISGEAAPGYSSGDAI 836 D+ L VR++NG MVP SAF WV + YNG P++ I GEAAPG SSGDA+ Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 837 AEMERLVAELPAGFGYEWTGQSLQEIQSGSQAPLLIALSCLLVFLCLAALYESWSIPVSV 896 A ME L ++LPAG GY+WTG S QE SG+QAP L+A+S ++VFLCLAALYESWSIPVSV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 897 IMVVPLGVIGAVLAVTMRDMPNDVYFKVGLIAIIGLSAKNAILIIEFAKELRE-QGKSLI 955 ++VVPLG++G +LA T+ + NDVYF VGL+ IGLSAKNAILI+EFAK+L E +GK ++ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 956 DSTLEAAHLRFRPILMTSLAFTLGVLPLAIATGASSGSQRAIGTGVMGGMISATVLAIFF 1015 ++TL A +R RPILMTSLAF LGVLPLAI+ GA SG+Q A+G GVMGGM+SAT+LAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1016 VPVFFVFVMKIFE 1028 VPVFFV + + F+ Sbjct: 1021 VPVFFVVIRRCFK 1033 Score = 93.0 bits (231), Expect = 3e-21 Identities = 88/515 (17%), Positives = 188/515 (36%), Gaps = 49/515 (9%) Query: 542 VIYLALLAGLGWAFLQLPSSFLPDEDQGFVIVMMQLP---SEATANRTTEVIEQTETIFG 598 V+ + L+ A LQLP + P V V P ++ + T+VIEQ Sbjct: 14 VLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMN--- 70 Query: 599 QEKAVDTIVAINGFSFFGSGQNAGLAFVTLKDWSERDADNSAQSIAGRATMAMSQIKDAI 658 +D ++ ++ S +AG +TL S D D + + + +A + + Sbjct: 71 ---GIDNLMYMSSTSD-----SAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 659 -------SFALSPPAIQGLGTTGGFSFRLQDRAGLGQAALAEARDQLLDLASQSKV-LTG 710 + S + + D + + +D L L V L G Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDD---ISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 711 VRFEGMPDAAQVSVNIDREKANTFGVTFADINSTISTN---LGSSYVNDFPNAGRMQRVT 767 ++ + + +D + N + +T D+ + + + + + P Q++ Sbjct: 180 AQY-------AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG-QQLN 231 Query: 768 VQADETKRMQTA-DLLNLNVR-NSNGGMVPLSAFADVEW-VKAPTQTVGYNGYPAVRISG 824 R + + + +R NS+G +V L A VE + NG PA + Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291 Query: 825 EAAPGYSSGDAI----AEMERLVAELPAGFGYEWTGQSLQEIQSGSQA---PLLIALSCL 877 + A G ++ D A++ L P G + + +Q L A+ + Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAI--M 349 Query: 878 LVFLCLAALYESWSIPVSVIMVVPLGVIGAVLAVTMRDMPNDVYFKVGLIAIIGLSAKNA 937 LVFL + ++ + + VP+ ++G + + G++ IGL +A Sbjct: 350 LVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDA 409 Query: 938 ILIIE-FAKELREQGKSLIDSTLEAAHLRFRPILMTSLAFTLGVLPLAIATGASSGSQRA 996 I+++E + + E ++T ++ ++ ++ + +P+A G++ R Sbjct: 410 IVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 997 IGTGVMGGMISATVLAIFFVPVFFVFVMKIFERGR 1031 ++ M + ++A+ P ++K Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 5e-06 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 105 QVKVDSAEATLKRAQAVVDQAKRTADRQSRLKEAQVTAVQQYD-DAIAALAQAEADVGIA 163 + K A L+ ++ ++Q + ++ + VT Q + + + L Q ++G+ Sbjct: 258 ENKYVEAVNELRVYKSQLEQIESEI-LSAKEEYQLVT--QLFKNEILDKLRQTTDNIGLL 314 Query: 164 EAGLAEAKLNLQYTNVTAPISGRI-GRALITEGALVNTNDP 203 LA+ + Q + + AP+S ++ + TEG +V T + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Score = 36.7 bits (85), Expect = 2e-04 Identities = 21/124 (16%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 60 PGRIT-ATRIAEVRPRISGIVVERVFEQGTMVKEGDVLYRIDPAPFQVKVDSAEATLK-- 116 G++T + R E++P + IV E + ++G V++GDVL ++ + +++L Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 117 -----RAQAVVDQAKRTADRQSRLKEAQVTAVQQYDDAIAALAQAEADVGIAEAGLAEAK 171 R Q + + + +L + ++ + + + + + + Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 172 LNLQ 175 LNL Sbjct: 207 LNLD 210
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.011 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Query: 5 ASRSSFNPRGRHVGSLQLKTIRKAFGSHEVLKGIDLDVKDGEFVIFVGPSGCGKSTLLRT 64 + + PR L+ + K V + ++ K V+ G G GKSTL+ T Sbjct: 560 KTPDDYKPRR----LRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINT 615 Query: 65 IAGLEDATSGSVQI 78 + GL+ + I Sbjct: 616 LVGLDFFSDTHFDI 629
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.004 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 60 EALAELEPELCSINTYSDTHADYAVMAMEAGAHVFVEKP--LATTVADAERVVACARANG 117 + + P+L + + A+ A E GA+ ++ KP L + R +A + Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 118 RKLVV-----GYILRHHPSWMRLIAEARKL 142 KL ++ + + +L Sbjct: 127 SKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 32.9 bits (75), Expect = 0.001 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 20/155 (12%) Query: 127 LGTGVGGGLVIDGRLINADGGFAGEWGHGPAVAAAAGHPPIAIPAFPC---GCGQSRCVD 183 LG G V +G+ I+ GF G A+ +G +I ++ V+ Sbjct: 208 LGNGSSIAAVKNGKSIDTSMGFTPL--EGLAMGTRSGSIDPSIISYLMEKENISAEEVVN 265 Query: 184 TVGGARGLERLHETVHGKALSSHDIIEG-WQNGNAEAARTIDVFVDLVSSPLALVINITG 242 + G+ + G + D+ + ++NG+ A ++VF V + G Sbjct: 266 ILNKKSGVY----GISGISSDFRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMG 321 Query: 243 A--TIVPVGGGLSNAEALLAEIDRAVRARILRRFD 275 IV G + E +R IL + Sbjct: 322 GVDVIVFTAG--------IGENGPEIREFILDGLE 348
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.024 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 159 SAAAVAAGLVPLAIGTDTGGSVRIPAAMTGIVG 191 ++ A G++PLAI G + G++G Sbjct: 977 TSLAFILGVLPLAISNGAGSGAQNAVG-IGVMG 1008
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 75.8 bits (186), Expect = 2e-17 Identities = 83/331 (25%), Positives = 135/331 (40%), Gaps = 47/331 (14%) Query: 22 DIKPAIIYDLGGKFDKSFNEAAFNGAEKFKTETGIEYREFEIANDAQREQALRRFASDGN 81 +KP +I D G DKSFN++AF + +TGIE E ++ E A S G+ Sbjct: 61 KLKPVLITDEGKIDDKSFNQSAFEALKAINKQTGIEINNVEPSS--NFESAYNSALSAGH 118 Query: 82 SPIVMAGFNWAASLEKLAGEYPD------TKFAIIDMVVEKPNVK---SIVFKEQEGSYL 132 V+ GF S+++ + + K ID +E K S+ F +E ++ Sbjct: 119 KIWVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIET-EYKWFYSLQFNIKESAFT 177 Query: 133 VG-----VLAGLASKTKTVSFVGGMDIPLIHKFACGYVGGAKSTGADVKVLEAY------ 181 G L+ + V+ GG P + F G+ G K + Y Sbjct: 178 TGYAIASWLSEQDESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSSKIYHTSPVK 237 Query: 182 --TGTTPDAWNDPVKGG--EIAKSQIDQGSDVVYHAAGGTGVGVLQAAADAGKLGIGVDS 237 +G T + V + + V+ AG ++ A+ G+ IGVDS Sbjct: 238 LDSGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVR-LANKGQYVIGVDS 296 Query: 238 NQNMLQ-PGKVLTSMLKRVDVAVYDSFMA-------------AKDDKFEFGISNLGL-KE 282 +Q M+Q ++LTS+LK + AVY++ + KD K + S+ G KE Sbjct: 297 DQGMIQDKDRILTSVLKHIKQAVYETLLDLILEKEEGYKPYVVKDKKADKKWSHFGTQKE 356 Query: 283 DGVGYA----LDEHNQVLITPEMKEAVEKVK 309 +G A + Q I ++KEA++ K Sbjct: 357 KWIGVAENHFSNTEEQAKINNKIKEAIKMFK 387
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.2 bits (68), Expect = 0.017 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 7/153 (4%) Query: 212 SNRPLVGGI--GFLILYQCGVRLGTSMLSPFMVDI--GFPVATIGWVRGAGGAVVGLIGA 267 N P + G+ G +I G G + P+M+ A IG V G + +I Sbjct: 254 KNIPFMIGVLCGGIIF---GTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310 Query: 268 LAGAALVQRFGSGRTLAAFAAVNLLAFAGLALFAFGIWQGDIAAIVLLLVQAAAVAMSFV 327 G LV R G L ++F + IV +L + Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370 Query: 328 ALYAMMMNWSDTEQAATDFAVLQSLDAALAVAM 360 + + + + + L +A+ Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 140 bits (355), Expect = 8e-39 Identities = 100/404 (24%), Positives = 179/404 (44%), Gaps = 15/404 (3%) Query: 32 LSLSMLLSSLGTSIANVGLPSLATAFSASFQQVQWVVLAYLLAITTLIVGVGRLGDMVGR 91 L + S L + NV LP +A F+ WV A++L + G+L D +G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 92 RRLLLAGILLFTVASGLSGAAPS-LPLLIAARAVQGLGAAVMMALAMALVGETVAKEKTG 150 +RLLL GI++ S + S LLI AR +QG GAA AL M +V + KE G Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 151 GAMGLLGTMSAIGTALGPSLGGVLIAGLGWQAIFVVNVPLGALAFILARRSLPADRQGSA 210 A GL+G++ A+G +GP++GG++ + W +++ +P+ + + L Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKK---EV 193 Query: 211 AERTGFDVPGTLLLGLTLAAYALAMTVAHDSFGPLNMALLAAAVVGAGLFVLAERRATSP 270 + FD+ G +L+ + + + L T SF L +V+ +FV R+ T P Sbjct: 194 RIKGHFDIKGIILMSVGIVFFMLFTTSYSISF-------LIVSVLSFLIFVKHIRKVTDP 246 Query: 271 LMRPEALRDPVLGAGLAMSALVSTVMMATLVVGPFYLSRALGLGEALVG-IVMSAGPVVS 329 + P ++ G+ ++ + + + P+ + L A +G +++ G + Sbjct: 247 FVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSV 306 Query: 330 ALSGLPAGRAVDRLGAPFVIVTGLLAMAAGSFALSVLPEMFGVAGYLAAMLVLTPGYQLF 389 + G G VDR G +V+ G+ ++ S L E + + VL G Sbjct: 307 IIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFT 365 Query: 390 QAANNTAVMVDVRPDRRGVVSGMLNLSRNLGLITGASVMGAVFA 433 + +T V ++ G +LN + L TG +++G + + Sbjct: 366 KTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 4e-04 Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 48/250 (19%) Query: 252 GQHLASMQRELQRTLKQQKSL---AELGLAVSKIN-HDMRNILSSAQLISDRLADVDDPV 307 G H ++ + + S+ A+L ++IN H M N L++ + + + Sbjct: 137 GWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREM 196 Query: 308 VKRFAPTLLR-TIDRAVGYT---REVLSYGRTTEAEPHRRFLALRPLVEDVAELLAVDRQ 363 + + L+R ++ + + L+ V+ +L ++ + Sbjct: 197 LTSLS-ELMRYSLRYSNARQVSLADELTV------------------VDSYLQLASIQFE 237 Query: 364 DGIDFEIQVRDDIEVDADSEQLFRVVHNICRNAVEALANYKPEDGSERRISVSAVRTGSV 423 D + FE Q+ I D + +V + N ++ P+ G +I + + Sbjct: 238 DRLQFENQINPAIM---DVQVPPMLVQTLVENGIKHGIAQLPQGG---KILLKGTKDNGT 291 Query: 424 VTISIDDTGPGMPAKARENLFAAFRGSARSGGTGLGLAIARE-LVLAHGGTIALVEKPTP 482 VT+ +++TG +E TG GL RE L + +G + Sbjct: 292 VTLEVENTGSLALKNTKE-------------STGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 483 G-TLFRIELP 491 G + +P Sbjct: 339 GKVNAMVLIP 348
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 92.3 bits (229), Expect = 4e-25 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 9/200 (4%) Query: 31 LSRERIVATAVELLDAQGIDGLTMRRLADRLGSGVMSLYWHVDNKEDVFD-LALDSVLEY 89 L+RE ++ A+ELL+ GIDGLT R+LA +LG +LYWHV NK + D LA++ + + Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARH 63 Query: 90 RGPPQLVESRDWRGKVVHMLEDWRAGMLRHPWSASLLPRRALGPNILSRLELLSRTLSGA 149 W+ + + +R +LR+ A + +E R ++ Sbjct: 64 HDYSLPAAGESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFMTEN 123 Query: 150 GVADADLNAAIWSLWNYVMGATITRASFGLSDEDRAAAQQRLTRLSEHYPTIERS--RLL 207 G + D AI ++ ++ +GA + + E AA R E+ P + R +++ Sbjct: 124 GFSLRDGLYAISAVSHFTLGAVLEQ------QEHTAALTDRPAAPDENLPPLLREALQIM 177 Query: 208 LDNDWDGAFRKGLDFLLDGL 227 +D + AF GL+ L+ G Sbjct: 178 DSDDGEQAFLHGLESLIRGF 197
>cloacin#Cloacin signature. Length = 551 Score = 39.7 bits (92), Expect = 1e-04 Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 1253 ITGGSPGGGGGGGTSLALGGTTVLKAGGGGGGGGAAGASSGSTAPDPKDGGNARTPTANA 1312 ++GG G G S G G G GGGA+ S S+ +P GG+ Sbjct: 1 MSGGDGRGHNTGAHST--SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 1313 NCNSSGNGASAADISGSSDGGSGGGGGGGYTGGKAGSGYPYNAT 1356 G +G+S GGSG GG G+P +T Sbjct: 59 GSGHGNGGG-----NGNSGGGSGTGGNLSAVAAPVAFGFPALST 97 Score = 39.7 bits (92), Expect = 1e-04 Identities = 34/115 (29%), Positives = 36/115 (31%), Gaps = 13/115 (11%) Query: 1214 GDTITGTVGSGGGVNGFSDNGGAGGSGTGRGGDGGDTTSITGGSPGGGGGGGTSLALGGT 1273 I G G G SD G GG G GGS G GGG Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN-------- 68 Query: 1274 TVLKAGGGGGGGGAAGASSGSTAPDPKDGGNARTPTANANCNSSGNGASAADISG 1328 G GGG G G S AP TP A S GA +A I+ Sbjct: 69 -----GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Score = 38.2 bits (88), Expect = 3e-04 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Query: 1218 TGTVGSGGGVNGFSDNGGAGGSGTGRGGDGGDTTSITGGSPGGGGGGGTSLALGGTTVLK 1277 TG + G +NG G GG + G + GGS G GG S Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS---------- 60 Query: 1278 AGGGGGGGGAAGASSGS 1294 G GGG G +G SG+ Sbjct: 61 GHGNGGGNGNSGGGSGT 77
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 57.2 bits (137), Expect = 3e-10 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 30/157 (19%) Query: 102 GTDAQANGDRSLAIGRQNQAGNEQSIGIGAGNTATGKLSIGIGSSNVASGEQSLSLGAGN 161 G +A A G S+AIG +A ++ +GAG+ ATG S+ IG + A G+ +++ GA + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 162 NALGQGSISIGTETTAGGLRSIAFGVRASTKEANLDIPDDVAAIDAIAIGTNTKANGDRS 221 A G +A G RAST + +A+G N+KA+ S Sbjct: 122 TAQKDG---------------VAIGARASTSDT------------GVAVGFNSKADAKNS 154 Query: 222 VSIGTGSQASSG---AVSIGDAAKAVGDKSVSIGTES 255 V+IG S ++ +++IGD +K + SVSIG ES Sbjct: 155 VAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHES 191 Score = 44.9 bits (105), Expect = 2e-06 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 211 GTNTKANGDRSVSIGTGSQASSGA-VSIGDAAKAVGDKSVSIGTESWADGDESVSIGLVN 269 G N A G S++IG ++A+ GA V++G + A G SV+IG S A GD +V+ G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 270 NAGFEG---NDRIKGGQTSVSLGAFNQSPGIEAIAIGARNE--ANADRSIAIGSRAKT 322 A +G R T V++G +++ ++AIG + AN SIAIG R+KT Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKT 179 Score = 44.1 bits (103), Expect = 3e-06 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 32/186 (17%) Query: 461 GNEALASADEAIAIGTGAVASGLKSISIGVGNTVSGASSGAIGDPTDITGTGSYSLGNDN 520 G A A +IAIG A A+ ++++G G+ +G +S AIG + G + + G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 521 TIAADNAGTFGNDNTLADAADGSRVIGNGNNIDVSDAFVLGNGADVTEVGGVALGSGSVS 580 T D A +D +G + D ++ +G+ + V G ++ G S Sbjct: 122 TAQKDGVAI----GARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRS 177 Query: 581 DTGADVAGYVPGGASTADQNAIEATQSTRGAVAVGNPDAETGVYRQITGVAAGTADSDAA 640 T +V++G+ + RQ+T +AAGT D+DA Sbjct: 178 KT------------------------DRENSVSIGH----ESLNRQLTHLAAGTKDTDAV 209 Query: 641 NVAQLK 646 NVAQLK Sbjct: 210 NVAQLK 215 Score = 37.6 bits (86), Expect = 4e-04 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 4/105 (3%) Query: 1160 ESVAESKSYTDEKTEWAIDQAAIYTDQVIETK----VSAVNNYAQQRFAQLSGEIGQVRS 1215 E++A + Y D K+ + A YTD + + N Y +F QL + ++ + Sbjct: 321 EALASANVYADSKSSHTLKTANSYTDVTVSNSTKKAIRESNQYTDHKFRQLDNRLDKLDT 380 Query: 1216 EARQAAAIGLAAASLRFDNEPGKLSVALGGGFWRSEGALAFGAGY 1260 + A A SL GK++ G G +RS ALA G+GY Sbjct: 381 RVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGY 425 Score = 32.9 bits (74), Expect = 0.009 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 16/135 (11%) Query: 4 GRQSVSAGSGSLAFGNGSYANSNGSVAIGQSAYAANVRAIAIG------GDDAFAWREAE 57 G + + G S+A G + A +VA+G + A V ++AIG GD A + A Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 58 QTKAGGSQSIAMGVRARTKSLVVDDPDTVANEADPGGASDAIAIGTDAQ--ANGDRSLAI 115 + G +A+G RA T D A +++AIG + AN S+AI Sbjct: 122 TAQKDG---VAIGARASTS-----DTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAI 173 Query: 116 GRQNQAGNEQSIGIG 130 G +++ E S+ IG Sbjct: 174 GDRSKTDRENSVSIG 188 Score = 31.8 bits (71), Expect = 0.019 Identities = 19/66 (28%), Positives = 36/66 (54%) Query: 1140 IANVAKGVKATDAVNVGQLDESVAESKSYTDEKTEWAIDQAAIYTDQVIETKVSAVNNYA 1199 + ++A G K TDAVNV QL + + +++ T++++ + A Y D + + NNY Sbjct: 196 LTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYT 255 Query: 1200 QQRFAQ 1205 + A+ Sbjct: 256 DSKSAE 261 Score = 30.6 bits (68), Expect = 0.042 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%) Query: 98 AIAIGTDAQANGDRSLAIGRQNQAGNEQSIGIGAGNTATGKLSIGIGSSNVASGEQSLSL 157 A+A+G + A G S+AIG ++A + ++ GA +TA K + IG+ S + +++ Sbjct: 86 AVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQ-KDGVAIGARASTS-DTGVAV 143 Query: 158 GAGNNALGQGSISIG--TETTAGGLRSIAFGVRASTKEAN 195 G + A + S++IG + A SIA G R+ T N Sbjct: 144 GFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDREN 183
>PF06776#Invasion associated locus B Length = 214 Score = 93.1 bits (231), Expect = 7e-26 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 4/135 (2%) Query: 57 FGNWTLICDENFKTKQKICNITQNVAD-ESGKSIFSWSLAATA-EGRPMMILRVPPAAGK 114 G+W + CD K + C + Q+V + + + + TA + +M + P Sbjct: 80 HGDWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILKTADQKSKLMRVVAPLGVLL 139 Query: 115 GSRVSLSFPDRKKPVEVEVESCDRGVCLATVPVGPILRDNIAREATVGVSYGTGDG-TIS 173 S + L D C C+A V + L + T I Sbjct: 140 PSGLGLKL-DNVDVGRAGFVRCLPNGCVAEVVMDDKLLGQLRTAKTATFIIFETPEEGIG 198 Query: 174 INLPLKGLNPALEAI 188 L L G+ + + Sbjct: 199 FPLSLNGIGEGYDKL 213
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.2 bits (63), Expect = 0.018 Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 16 NLSRHWLVFASAFFFGLVVCAGIQQSWSEGLG------AILIPTAIGYFVVKGGRNVSGL 69 +++ H+ + + + CA + + S+ G L A+ Y ++ + L Sbjct: 40 DVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVL 99 Query: 70 -LVRYSIFMVGFMFAISALVISEITEAHNSTQ 100 + R + G A++ I++IT+ + Sbjct: 100 YIGRIVAGITGATGAVAGAYIADITDGDERAR 131
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.002 Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 95 LPNVNILIEMADMREANRAYEANLQTIKQSRDLISQTIDL 134 + VN+ E +++ + Y AN Q ++ + + I++ Sbjct: 506 ISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 27.2 bits (60), Expect = 0.028 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%) Query: 5 TSALKVSASGLQAESTRLRIVSENIANARSTGDAPGADPFRRKTISFAAEVDRASGASLV 64 +S + + SGL A L S NI++ G + R+T A V Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAG-------YTRQTTIMAQANSTLGAGGWV 53
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 34.3 bits (78), Expect = 2e-05 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 25 SASLVMPGAGTAAPQAGSFAEVLGNMTTDAIRSMKSAEGTSLQAIRGEA--NTREVVDAV 82 + ++ + SFA L + +A + + GE +V+ + Sbjct: 15 ATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDM 74 Query: 83 MSAEQSLQTAIAIRDKVVTAYLEIARMQI 111 A S+Q I +R+K+V AY E+ MQ+ Sbjct: 75 QKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 2e-06 Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 213 QVKQNYLESSNVDPVKEITDLISAQRAYEMNSKIIQAADEMAATV 257 Q+ S V+ +E +L Q+ Y N++++Q A+ + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDAL 542 Score = 38.8 bits (90), Expect = 1e-05 Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 4 LSIAATGMNAQQLNLEVIANNIANINTTGYKRAR 37 ++ A +G+NA Q L +NNI++ N GY R Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.5 bits (60), Expect = 0.029 Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 104 REQYAVERGSTVRLVFNNGGLTITAAGSPLQDAAVGDLIRVRNVDTGVIVSGTVMADS 161 Q A R + + NG + TAAG L A G + + + V G V+A + Sbjct: 238 ARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASA 295
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 482 bits (1242), Expect = e-173 Identities = 266/363 (73%), Positives = 312/363 (85%) Query: 9 LLTLAVVFAATLTSAYAASRIKDVASLQSGRDNQLIGYGLVVGLQGTGDSLRSSPFTDQS 68 L+ A+ F +T + SRIKD+ASLQ+GRDNQLIGYGLVVGLQGTGDSLRSSPFT+QS Sbjct: 11 LVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQS 70 Query: 69 IRAMLQNLGISTQGGDSRTRNVAAVLVTATLPPFASPGSRLDVTVGSLGDATSLRGGTLV 128 +RAMLQNLGI+TQGG S +N+AAV+VTA LPPFASPGSR+DVTV SLGDATSLRGG L+ Sbjct: 71 MRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 129 MTSLSGADGQIYAVAQGSVVVSGFNAQGEAAQLSQGVTTAGRVPNGAIIERELPSKFKDG 188 MTSLSGADGQIYAVAQG+++V+GF+AQG+AA L+QGVTT+ RVPNGAIIERELPSKFKD Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDS 190 Query: 189 FNLVLQLRNPDFSTAVGMAAAINRYAAAQFGGRIAEALDSQSVLVQKPKMADLARLMADV 248 NLVLQLRNPDFSTAV +A +N +A A++G IAE DSQ + VQKP++ADL RLMA++ Sbjct: 191 VNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEI 250 Query: 249 ENLVIETDAPARVVINERTGTIVIGQDVRVAEVAVSYGTLTVQVSETPTIVQPEPFSRGE 308 ENL +ETD PA+VVINERTGTIVIG DVR++ VAVSYGTLTVQV+E+P ++QP PFSRG+ Sbjct: 251 ENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQ 310 Query: 309 TAYEPNTTIEAQADGGTVAILNGSSLRSLVAGLNSIGVKPDGIIAILQSIKSAGALQAEL 368 TA +P T I A +G VAI+ G LR+LVAGLNSIG+K DGIIAILQ IKSAGALQAEL Sbjct: 311 TAVQPQTDIMAMQEGSKVAIVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370 Query: 369 VLQ 371 VLQ Sbjct: 371 VLQ 373
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 265 bits (678), Expect = 2e-92 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 18/209 (8%) Query: 29 PAMSPIGSGLQYTQTPQLAMYPKQPRHVTNGYSLWNDQQAALFKDARAINIGDILTVDIR 88 P +P+ +G + Q+ Q Y QP LF+D R NIGD LT+ ++ Sbjct: 41 PGPTPVANGSIF-QSAQPINYGYQP----------------LFEDRRPRNIGDTLTIVLQ 83 Query: 89 IDDKASFENETDRSRKNSSGFNLGASGQSQTSDFAWS-GDLEYGSNTKTEGDGKTERSEK 147 + AS + + SR + F + F + D+E G G S Sbjct: 84 ENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNT 143 Query: 148 LRLLVAAVVTGVLENGNLLISGSQEVRVNHELRILNVAGIVRPRDVDADNVISYDRIAEA 207 + V VL NGNL + G +++ +N + +G+V PR + N + ++A+A Sbjct: 144 FSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADA 203 Query: 208 RISYGGRGRLTEVQQPPWGQQLVDLVSPL 236 RI Y G G + E Q W Q+ +SP+ Sbjct: 204 RIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 281 bits (721), Expect = 2e-98 Identities = 98/246 (39%), Positives = 157/246 (63%), Gaps = 5/246 (2%) Query: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWI--IRTFGLLTVLSVAPGILI 58 M R + ++ + P I + P+ G SW ++T +T L+ P IL+ Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPG-ITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 59 MVTSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKN 118 M+TSF R +I F +LR+ +G + P N +++ LALF+TF++M+P D+ + D P + Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 119 EISETDAMQRMSEPFREFMVANTRDKDLQLFIDIAREKGQTVVVDEKVDLRAVVPAFMIS 178 +IS +A+++ ++P REFM+ TR+ DL LF +A + E V +R ++PA++ S Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANT--GPLQGPEAVPMRILLPAYVTS 177 Query: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 E++ F+IGF I +PFL+IDL++A++ MA+GMMM+PP I+LPFK++ FVL+DGW LLVG Sbjct: 178 ELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVG 237 Query: 239 SLVRSF 244 SL +SF Sbjct: 238 SLAQSF 243
>FLAGELLIN#Flagellin signature. Length = 507 Score = 149 bits (376), Expect = 2e-42 Identities = 58/379 (15%), Positives = 117/379 (30%), Gaps = 4/379 (1%) Query: 4 ILTNNSAMAALSTLRSISSSMEDTQSRISSGLRVGSASDNAAYWSIATTMRSDNQALSAV 63 I TN+ ++ + L SS+ R+SSGLR+ SA D+AA +IA S+ + L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLG---AAKVDTAYSGMESAIEVVKEIKAKLVAATEDGVDKAKIQEEITQLKDQLT 120 G A + A + + + ++ V+E+ + T D IQ+EI Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SIAEAASFSGENWLQADLSGGPVTKSVVGGFVRDSSGAVSVKKVD-YSLNTDTVLFDTTG 179 ++ F+G L D + G + + VK + N + T G Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 180 NTGILDKVYNVSQASVTLPVNVNGTTSEYTVGAYNVDDLIDASATFDGDYANVGAGALAG 239 + K + V + + + Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 240 DYVKVQGSWVKAVDVAATGQEVVYDDGTTKWGVDTTVTGAPATNVAAPASIATIDITIAA 299 + K+ A + + K G G T + ++ Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTI 303 Query: 300 QAGNLDALIAGVDEALTDMTSAAASLGSISSRIDLQSDFVNKLSDSIDSGVGRLVDADMN 359 + +A + ++ +A + F +S ++A+ Sbjct: 304 NGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNA 363 Query: 360 EESTRLKALQTQQQLAIQA 378 + + + A A Sbjct: 364 VKGESKITVNGAEYTANAA 382 Score = 94.7 bits (235), Expect = 2e-23 Identities = 57/363 (15%), Positives = 110/363 (30%), Gaps = 19/363 (5%) Query: 32 SSGLRVGSASDNAAYWSIATTMRSDNQALSAVQDALGLGAAKVDTAYSGMESAIEVVKEI 91 L + + N + ++S + ++ SG + Sbjct: 164 VKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTV 223 Query: 92 KAKLVAATEDGVDKAKIQEEITQLKDQLTSIAEAASFSGENWLQADLSGGPVTKSVVGGF 151 K V+ A Q ++ + S +A G + G Sbjct: 224 PDK------VYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDT 277 Query: 152 VRDSSGAVSVKKVDYSLNTDTVLFDTTGNTGILDKVYNVSQASVTLPVNVNGTTSEYTVG 211 ++ + + + T + V +++ + + +S+ Sbjct: 278 FDYKGVTFTIDTKTG-NDGNGKVSTTINGEKVTLTVADITAGAANV-DAATLQSSKNVYT 335 Query: 212 AYNVDDLIDASATFDGDYANVGAGALAGDYVKVQGSWVKAVDVAATGQEVVYDDGTTKWG 271 + T + A + + + A A + V G T + Sbjct: 336 SVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFI 395 Query: 272 VDTTVTGAPATNVAAPASIATIDITIAAQAGNLDALIAGVDEALTDMTSAAASLGSISSR 331 T + N A AA + +A +D AL+ + + +SLG+I +R Sbjct: 396 DKTASGVSTLINEDA-----------AAAKKSTANPLASIDSALSKVDAVRSSLGAIQNR 444 Query: 332 IDLQSDFVNKLSDSIDSGVGRLVDADMNEESTRLKALQTQQQLAIQALSIANSDSQNVLS 391 D + +++S R+ DAD E + + Q QQ L+ AN QNVLS Sbjct: 445 FDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLS 504 Query: 392 LFR 394 L R Sbjct: 505 LLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 153 bits (387), Expect = 7e-44 Identities = 55/378 (14%), Positives = 111/378 (29%), Gaps = 4/378 (1%) Query: 4 ILTNIAAMAALQTLRTIGSNMEETQAHVSSGLRVGQAADNAAYWSIATTMRSDNMALSAV 63 I TN ++ L S++ +SSGLR+ A D+AA +IA S+ L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLG---AAKVDTAYSGMESAIEVVKEIKAKLVAATEDGVDKAKIQEEIDQLKDQLT 120 G A + A + + + ++ V+E+ + T D IQ+EI Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SIAEAASFSGENWLQADLSGGPVTKSVVGSFVRDAGGAVSVKKVD-YSLNTNSVLFDTAG 179 ++ F+G L D + G + + VK + N N T G Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 180 NTGILDKVYNVSQASVTLPVNVNGTTSEYTVGAYNVDDLIDASATFDGDYANVGAGALAG 239 + K + V + + + Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 240 DYVKVQGSWVKAVDVAATGQEVVYDDGTTKWGVDTTVTGAPATNVAAPASIATIDITIAA 299 + K+ A + + K G G T + ++ Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTI 303 Query: 300 QAGNLDALIAGVDEALTDMTSAAADLGSIAMRIDLQSDFVNKLSDSIDSGVGRLVDADMN 359 + +A + ++ +A + F +S ++A+ Sbjct: 304 NGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNA 363 Query: 360 EESTRLKALQTQQQLAIQ 377 + + + A Sbjct: 364 VKGESKITVNGAEYTANA 381 Score = 94.3 bits (234), Expect = 3e-23 Identities = 57/363 (15%), Positives = 108/363 (29%), Gaps = 19/363 (5%) Query: 32 SSGLRVGQAADNAAYWSIATTMRSDNMALSAVQDALGLGAAKVDTAYSGMESAIEVVKEI 91 L + N + ++S ++ SG + Sbjct: 164 VKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTV 223 Query: 92 KAKLVAATEDGVDKAKIQEEIDQLKDQLTSIAEAASFSGENWLQADLSGGPVTKSVVGSF 151 K V+ A Q D ++ + S +A G + G Sbjct: 224 PDK------VYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDT 277 Query: 152 VRDAGGAVSVKKVDYSLNTNSVLFDTAGNTGILDKVYNVSQASVTLPVNVNGTTSEYTVG 211 G ++ + N + T + V +++ + + +S+ Sbjct: 278 FDYKGVTFTIDTKTG-NDGNGKVSTTINGEKVTLTVADITAGAANV-DAATLQSSKNVYT 335 Query: 212 AYNVDDLIDASATFDGDYANVGAGALAGDYVKVQGSWVKAVDVAATGQEVVYDDGTTKWG 271 + T + A + + + A A + V G T + Sbjct: 336 SVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFI 395 Query: 272 VDTTVTGAPATNVAAPASIATIDITIAAQAGNLDALIAGVDEALTDMTSAAADLGSIAMR 331 T + N A AA + +A +D AL+ + + + LG+I R Sbjct: 396 DKTASGVSTLINEDA-----------AAAKKSTANPLASIDSALSKVDAVRSSLGAIQNR 444 Query: 332 IDLQSDFVNKLSDSIDSGVGRLVDADMNEESTRLKALQTQQQLAIQSLSIANSASENVLT 391 D + +++S R+ DAD E + + Q QQ L+ AN +NVL+ Sbjct: 445 FDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLS 504 Query: 392 LFR 394 L R Sbjct: 505 LLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 138 bits (349), Expect = 1e-38 Identities = 54/330 (16%), Positives = 102/330 (30%), Gaps = 12/330 (3%) Query: 4 ILTNVAAMAALQTLRGIDSNMEETQARVSSGLRVGTASDNAAYWSIATTMRSDNMALSAV 63 I TN ++ L S++ R+SSGLR+ +A D+AA +IA S+ L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLGAAKVDTAYAGM---ENAVEVVKEIRAKLVAATEDGVDKAKIQEEIEQLKQQLT 120 G + T + N ++ V+E+ + T D IQ+EI+Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SIATAASFSGENWLQADIT-TPVTKSVVGSFVRDSSGVVSVKTID-YVLDGNSVLFDTVG 178 ++ F+G L D + G + + VK++ + N TVG Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 179 DAGILDKIYNVSQASVTLPVNVNGTTTEYTVAAYAVDELIAAGATFDGDSANVTGYTVPA 238 D K V + + + Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQ-------L 236 Query: 239 GGIDYNGNFVKVEGTWVRAIDVAATGQEVVYDDGTTKWGVDTTVAGAPAINVVAPASIEN 298 D N ++ A + + K G G + N Sbjct: 237 TTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGN 296 Query: 299 IDITNAAQAANLDALIRGVDEALEDLISAT 328 ++ + + + ++ +AT Sbjct: 297 GKVSTTINGEKVTLTVADITAGAANVDAAT 326 Score = 90.5 bits (224), Expect = 7e-22 Identities = 47/268 (17%), Positives = 81/268 (30%), Gaps = 7/268 (2%) Query: 139 TTPVTKSVVGSFVRDSSGVVSVKTIDYVLDGNSVLFDTVGDAGILDKIYNVSQASVTLPV 198 T + + ++G K I + G DT G+ I + V Sbjct: 241 AENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKE-GDTFDYKGVTFTIDTKTGNDGNGKV 299 Query: 199 NVNGTTTEYTVAAYAVDELIAAGATFDGDSANVTGYTVPAGGIDYNGNFVKVEGTWVRAI 258 + + T+ + A S+ +V G ++ Sbjct: 300 STTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLE 359 Query: 259 DVAATGQEVVY------DDGTTKWGVDTTVAGAPAINVVAPASIENIDITNAAQAANLDA 312 A E T I+ A I+ AA + Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTAN 419 Query: 313 LIRGVDEALEDLISATSALGSISMRIGMQEEFVSKLTDSIDSGIGRLVDADMNEESTRLK 372 + +D AL + + S+LG+I R + +++S R+ DAD E + + Sbjct: 420 PLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMS 479 Query: 373 ALQTQQQLAIQSLSIANTNSENILQLFR 400 Q QQ L+ AN +N+L L R Sbjct: 480 KAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 110 bits (275), Expect = 4e-29 Identities = 48/295 (16%), Positives = 90/295 (30%), Gaps = 3/295 (1%) Query: 26 TTQGRISSGYRVETAADNAAYWSIATTMRSDNAALSTVHDALGLGAAKVDTFYSAMDTVI 85 T + +V A N + + T G AK Sbjct: 216 TDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEG 275 Query: 86 DVMTEIKAKLVAASEPGVDKDKINKEVAELKSQLNSAAQSASFSGENWLYNGASAALGTK 145 D ++ G D + + + A + + S+ Sbjct: 276 DTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYT 335 Query: 146 SIVASFNRSADGSVTVSTLNYDTAKSVLIDVTDPARGMLTKAVNADALQSTPTGTARNYY 205 S+V D + S D + + A + T Sbjct: 336 SVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGA---EYTANAAGDKVTLAGKT 392 Query: 206 LIDAGAAPAGATEIEIDNATTGAQLGDMISVVDELISQLTDSAATLGAITSRIEMQESFV 265 + A +T I D A + ++ +D +S++ ++LGAI +R + + + Sbjct: 393 MFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNL 452 Query: 266 ANLMDVIDKGVGRLVDADMNEESTRLKALQTQQQLGIQSLSIANTTSENILRLFQ 320 N + ++ R+ DAD E + + Q QQ G L+ AN +N+L L + Sbjct: 453 GNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507 Score = 103 bits (257), Expect = 1e-26 Identities = 47/327 (14%), Positives = 96/327 (29%), Gaps = 15/327 (4%) Query: 4 IMTNPAAMAALQTLRAINHNLETTQGRISSGYRVETAADNAAYWSIATTMRSDNAALSTV 63 I TN ++ L +L + R+SSG R+ +A D+AA +IA S+ L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 HDALGLGAAKVDTFYSAMDTV---IDVMTEIKAKLVAASEPGVDKDKINKEVAELKSQLN 120 G + T A++ + + + E+ + + D I E+ + +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SAAQSASFSGENWLYNGASAALGTKSIVASFNRSADGSVTVSTLN---YDTAKSVLIDVT 177 + F+G L + + + V +L ++ V Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 178 DPARGMLTKAVNADALQ-------STPTGTARNYYLIDAGAAPAGATEIEIDNATTGAQL 230 D +G T A+ Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 231 GDMISVVDELIS--QLTDSAATLGAITSRIEMQESFVANLMDVIDKGVGRLVDADMNEES 288 + + S ++ A GAI E + ID G + ++ Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTI 303 Query: 289 TRLKALQTQQQLGIQSLSIANTTSENI 315 K T + + ++ T ++ Sbjct: 304 NGEKVTLTVADITAGAANVDAATLQSS 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.4 bits (97), Expect = 2e-06 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 5/114 (4%) Query: 2 IVVVDDRALVKDGYASLFGREGIP-STGFDPREFGEWVSSAADSDIDAVEAFLIGQGEST 60 I+V DD A ++ R G + W+++ D V ++ E+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD---GDLVVTDVVMPDENA 62 Query: 61 FTLPRAIRDR-SRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVA 113 F L I+ PV+ MS + + + G D + KP E++ + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 5e-06 Identities = 13/49 (26%), Positives = 28/49 (57%) Query: 357 EILSGALESSNVDIAEELTAMIESQRNYTANSKVFQTGSELLEVLVNLK 405 ++ + S V++ EE + Q+ Y AN++V QT + + + L+N++ Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 38.4 bits (89), Expect = 5e-05 Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 9 TGVSGMNAQSNRLSTVAENIANANTTGYKRAST 41 +SG+NA L+T + NI++ N GY R +T Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQTT 38
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 68.4 bits (167), Expect = 2e-14 Identities = 77/406 (18%), Positives = 143/406 (35%), Gaps = 36/406 (8%) Query: 4 SSAIAIAQSAFSTTAQQTATVSKNIANSGNADYSR----------RMAMLGTTPGGAQIV 53 SS I A S + T S NI++ A Y+R + G G + Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 54 SIYRAQNEALLKQNLIGISQSSAQSSLLSGLEIMKSALGGNDYESSPSTYLSAFRNSLQT 113 + R + + Q +QSS ++ + + + L + SS +T + F SLQT Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML--STSTSSLATQMQDFFTSLQT 118 Query: 114 FASTPGNATIAATVVSDASDLANSISKTSAAVQDLRLDSDKKIAEEVANLNRLLAQFETA 173 S + ++ + L N T ++D + I V +N Q + Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 174 NNAVKQATAAGTDATA--ALDDRDKILKQVSELVGISTVTRAN-NDTVIYTSGGTVLFET 230 N+ + + T G A+ LD RD+++ +++++VG+ + + +G +++ + Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGS 238 Query: 231 LPREVTFAPKSAYDATVTGNGIFIDGVPLAAGSGADTSAQGKLAGLLQLRDDIAPTFQSQ 290 R+ A + ++DG G L G+L R ++ Sbjct: 239 TARQ--LAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNT 296 Query: 291 LDEMARGLVTLF---KEGGL-------PGLFTWSGGTVPAAGAVQPGLAASLSVNPAAKA 340 L ++A F + G F V + +A +V A+ Sbjct: 297 LGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAV 356 Query: 341 NPFLLRDGGFNG---VVSNPDGNAGYTVLLDGFVTAMDGDMAFDGA 383 F+ V+ N +TV D +G +AFDG Sbjct: 357 L-ATDYKISFDNNQWQVTRLASNTTFTVTPD-----ANGKVAFDGL 396 Score = 38.8 bits (90), Expect = 4e-05 Identities = 18/79 (22%), Positives = 39/79 (49%) Query: 390 SSIMEFAASSIGWFEQIRSGASTADDNKAALLARTQEALGSVTGVSIDEELSLLLDLEQS 449 S + AS + + T+ + ++ + S++GV++DEE L +Q Sbjct: 465 KSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQY 524 Query: 450 YKASAKLISTVDAMMASLL 468 Y A+A+++ T +A+ +L+ Sbjct: 525 YLANAQVLQTANAIFDALI 543
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 52.8 bits (127), Expect = 5e-13 Identities = 20/77 (25%), Positives = 39/77 (50%) Query: 5 DALDIVQAAIWTVIVASGPAVLAAMVVGVGIAFIQALTQVQEMTLTFVPKILAVMITAAI 64 D + A++ V++ SG + A ++G+ + Q +TQ+QE TL F K+L V + + Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 SAPFVGAQISIFTDIVF 81 + + G + + V Sbjct: 63 LSGWYGEVLLSYGRQVI 79
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 27.1 bits (60), Expect = 0.030 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 91 LGAFFG-GLAAGAIVGGVLSQPRYAAPRYSGG 121 + A FG G+ AG ++GG++ AP ++ Sbjct: 136 MSACFGFGMVAGPVLGGLMGGFSPHAPFFAAA 167
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 59.7 bits (144), Expect = 7e-11 Identities = 64/258 (24%), Positives = 101/258 (39%), Gaps = 15/258 (5%) Query: 1136 VWARIDGTRAHVEPEESGARVSEYDSRSWLLQAGIDALLHSSGKGELIGGLTAHYGGINT 1195 W R R ++ +D + + G D + +G +GGL + G Sbjct: 649 AWGRGFAQRQQLDNRAG----RRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRG 704 Query: 1196 DVSSFYGDGSIDTRGYGLGATLTWYGQNGFYLDGQGQLTRFDSDLDSDI--LGRLADGND 1253 F GDG T +G T+ +GFYLD + +R ++D + Sbjct: 705 ----FTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYR 760 Query: 1254 GLGYAVSIEAGHRIGLGDTWALTPQAQLVNTSVNFDDFVDPYGARVSLDDGNSLRGRIGL 1313 G S+EAG R D W L PQA+L + G RV + G+S+ GR+GL Sbjct: 761 THGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGL 820 Query: 1314 ALDREQQWQGAEGDGRSSRLYGTIDLYREFLGDTRADVSGVSFGIEADDWIGEIGIGGSY 1373 + + + GR + Y + +EF G +G++ E E+G+G + Sbjct: 821 EVGK----RIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAA 876 Query: 1374 NWGDDKYSLYGEARASTG 1391 G +SLY S G Sbjct: 877 ALG-RGHSLYASYEYSKG 893 Score = 34.3 bits (78), Expect = 0.004 Identities = 49/260 (18%), Positives = 86/260 (33%), Gaps = 16/260 (6%) Query: 344 SAIGLAAISQGNMGEARVSLDGGDVSTGGDNAEGLIATAKGAGGTATARLVDGNVKTAGR 403 + + +A + G A + + G+ G+ GG TA +K +GR Sbjct: 17 TTLAMALGALGAAPAAHADWNNQSIVKTGERQHGIHIQGSDPGGVRTA--SGTTIKVSGR 74 Query: 404 DAEGLIAHAGDESIPTSINADASVIMQAGSITTTGDGA-GGMIAETDIGPTPSTGKATAV 462 A+G++ E+ + + +G ++ G G + V Sbjct: 75 QAQGILL----ENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANV 130 Query: 463 QRAGTIMTSGGEIGGNEGSYAIAALSF-GSGLASIEQA------GGSATTAGAQSHALYA 515 + G + +IA + G+G IE+ + G AL + Sbjct: 131 GDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQS 190 Query: 516 LSIFGNTMVTQAAGSSAVATGAKASGLRALAGPGGGNEVTLDG-KVTAGSAPAVHTIGSA 574 L + ++ T ASG A G +E+TLDG +T G A V + A Sbjct: 191 LQP-EDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGA 249 Query: 575 GSKITIGSAAEIDGSASGTA 594 + + D A G Sbjct: 250 VVHLQRATIRRGDAPAGGAV 269
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.031 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 11/82 (13%) Query: 245 ILFICGGAFAGLDKIISARGEKTSIGFGATVRAPEDRRVGEVLRELEPEDLVKFGLIPEF 304 ++ ++ + +A G+ T G ++ E+ V E++ ++ + V+ G Sbjct: 69 VIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEII--VKEGESVRKG----- 121 Query: 305 IGRLPVLATLEDLDEDALIQIL 326 VL L L +A Sbjct: 122 ----DVLLKLTALGAEADTLKT 139
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.5 bits (76), Expect = 0.003 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 6/81 (7%) Query: 299 DWLLGLPWGKKSKIKTDLNHAEKVLDTDHFGLDKVKERIVEYLAVQARSSKIKGP----- 353 DW+ W + +++ L H D+ ++V + +++ P Sbjct: 537 DWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFD 596 Query: 354 -ILCLVGPPGVGKTSLAKSIA 373 + L G G+GK++L ++ Sbjct: 597 YSVVLEGTGGIGKSTLINTLV 617
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 119 bits (301), Expect = 2e-39 Identities = 47/88 (53%), Positives = 59/88 (67%) Query: 2 NKNELVAAVADKAGLSKADASSAVDAVFETIQGELKNGGDIRLVGFGNFSVSRREASKGR 61 NK +L+A VA+ L+K D+++AVDAVF + L G ++L+GFGNF V R A KGR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPSTGAEVDIPARNVPKFTAGKGLKDAV 89 NP TG E+ I A VP F AGK LKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 2e-05 Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 24/227 (10%) Query: 405 AEGNHGDAEREVARLKEGAADPAFLAERVHLLRQSDCLLRQQSSAREIDRLEAAICDRLD 464 EG + +L A+ L + LL+ R Q +R I+ + D Sbjct: 113 KEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPD 172 Query: 465 ELRPFAGTIDDLAALPAPAPAVVEAWRAEDHAEAERRLRLADRIADESERQAGDEARLAA 524 E + +++ L + W+ + ++ L L + A+ A Sbjct: 173 EPYFQNVSEEEVLRLTSLIKEQFSTWQNQK---YQKELNLDKKRAERLTVLARINRYENL 229 Query: 525 IA------------ANGGVVDDAAVCELRRRRDTAWQRHRAGLGEQTAIAFETALNEHDA 572 + + AV E + A R + I Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI--------ESE 281 Query: 573 ITALRLAQAERVAEIRSLTL-AVTERRARLQSLDAQRKAAEEQRQRL 618 I + + ++ L + + + L + EE++Q Sbjct: 282 ILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQAS 328 Score = 36.0 bits (83), Expect = 0.001 Identities = 39/209 (18%), Positives = 66/209 (31%), Gaps = 24/209 (11%) Query: 119 ATYSTMFSLDDDSIEEGGEAILKSEGELGSLLFSASSGLPDSTAVLAVLRAEADSFFRPQ 178 T T SL +E+ IL EL L P V S + Q Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194 Query: 179 --ARKHQLAELKAELDALKAERNEIDVNAREYAALRKALASMRARHEAAARLRSE----- 231 ++Q + + LD +AER + ++R + + L + Sbjct: 195 FSTWQNQKYQKELNLDKKRAERLTVLARIN---RYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 232 ---LRADRDRMRAQRDAVPLLARLRGARQELAGRDPLPVPPAEWQEELPVLRR-RDAEIA 287 L + + A + ++L E+ +EE ++ + EI Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEIL----------SAKEEYQLVTQLFKNEIL 301 Query: 288 AGLRQLHEELTRRREELAALPRDEQALAI 316 LRQ + + ELA +QA I Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVI 330
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 275 bits (704), Expect = 3e-91 Identities = 146/359 (40%), Positives = 209/359 (58%), Gaps = 3/359 (0%) Query: 9 RGLFLVFLILFLDIMGIAIIVPVLPTYLEELTGADIGEAAVDGGWLLLVYSAMQFLFAPL 68 R L ++ + LD +GI +I+PVLP L +L + + G LL +Y+ MQF AP+ Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHS--NDVTAHYGILLALYALMQFACAPV 62 Query: 69 IGNLSDRFGRRPVLLASVLTFALDNLICALATSYWMLFIGRSLAGISGASFGTASAYIAD 128 +G LSDRFGRRPVLL S+ A+D I A A W+L+IGR +AGI+GA+ A AYIAD Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD 122 Query: 129 VSDDENRAKNFGLIGIAFGTGFALGPVIGGFLGELGPRVPFYGAAALSFLNFIMGVFLLP 188 ++D + RA++FG + FG G GPV+GG +G P PF+ AAAL+ LNF+ G FLLP Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 189 ETLAPANRRRFEWHRANPLGALKQMRHYPGIGWVGLVFFLYWLAHAVYPAVWSFVGSYRY 248 E+ RR NPL + + R + + VFF+ L V A+W G R+ Sbjct: 183 ES-HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 249 GWSEGQIGLSLGIFGVGGAIVMALVLPRVVPALGERRTAALGLTFTALGMAGYAAAWEGW 308 W IG+SL FG+ ++ A++ V LGERR LG+ G A A GW Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 309 MVYAVIVATALESLADPPLRSIASVHVPPSAQGELQGALTSISSITTILGPLMFTQIFA 367 M + ++V A + P L+++ S V QG+LQG+L +++S+T+I+GPL+FT I+A Sbjct: 302 MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 169 bits (429), Expect = 1e-56 Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 5/158 (3%) Query: 4 AFYPGSFDPITNGHLDVLVQALNVAAKVIVAIGVHPGKAPLFSFDERADLIRAALEETLP 63 A YPGSFDPIT GHLD++ + + +V VA+ +P K P+FS ER + I A+ LP Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAH-LP 61 Query: 64 ERAADISVVSFDNLVVDAAREHGARLLVRGLRDGTDLDYEMQMAGMNRQMAPDIQTLFLP 123 + V SF+ L V+ AR+ A ++RGLR +D + E+QMA N+ +A D++T+FL Sbjct: 62 ----NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLT 117 Query: 124 AGTASRPITATLVRQIAAMGGDVSAFVPGAVHQALQAK 161 T ++++LV+++A GG+V FVP V AL + Sbjct: 118 TSTEYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 63.5 bits (154), Expect = 6e-14 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 11 VVVVGASRGIGKAIAEVAARDGAPVVLVARSEVALAAAADDIRNAGGEAFTVPLDFLADD 70 + GA++GIG+A+A A GA + V + L ++ A P D + D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD-VRDS 69 Query: 71 AALG--LEDFLSANGLFCDVLVNSAGYGLRGGAT-VLPLDEQLGLVDLNIRALTELTLRL 127 AA+ G D+LVN AG LR G L +E +N + + + Sbjct: 70 AAIDEITARIEREMGPI-DILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 128 LPGMVARRRGGVINLGSVASFTPGPYMALYYASKGFVRSFSEALHQELRHTGVTVTCVAP 187 M+ RR G ++ +GS + P MA Y +SK F++ L EL + V+P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 188 GPVSTE 193 G T+ Sbjct: 188 GSTETD 193
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 31.3 bits (70), Expect = 0.004 Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 149 CIGPVLGTILGVAAARDTVADGAALLAIYSLGLAV 183 CIG VLG +L + + V G A LA+ ++GLAV Sbjct: 316 CIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAV 350
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.5 bits (71), Expect = 0.001 Identities = 12/46 (26%), Positives = 22/46 (47%) Query: 14 IASGAVAQQADGTNAATGMVGGAATGAIIGGPIGAGVGAVVGATLG 59 ++ + + + + AAT +++G P+ A VGAV G G Sbjct: 363 AIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISG 408
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 35.7 bits (82), Expect = 3e-05 Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 13 TGIFAAPAIANDTNQSAVTGAAGGAVTGAIVGGPVGAAIGGAVGLVAG 60 TG A T ++V+ A T ++VG PV A +G G+++G Sbjct: 361 TGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISG 408
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (250), Expect = 2e-27 Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 11/263 (4%) Query: 2 ADRLKGKSAIVFGAGSSGPGWGNGKAAAVLYAREGARVACVDVDMEAAEETAAIIASEGG 61 A ++GK A + GA G G+A A A +GA +A VD + E E+ + + +E Sbjct: 3 AKGIEGKIAFITGAAQ-----GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR 57 Query: 62 QAVAIAADVTALASVEAAVAAARQAFGIISILHNNVGVTHMGGPVELSEAQFQQSVDLNL 121 A A ADV A+++ A + G I IL N GV G LS+ +++ + +N Sbjct: 58 HAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNS 117 Query: 122 GSVFRTAKAVIPHMIEAGGGAVVNI-SSLAGIRWTGYPYFAYYATKAAVNQATVAIAAQY 180 VF +++V +M++ G++V + S+ AG+ T AY ++KAA T + + Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMA--AYASSKAAAVMFTKCLGLEL 175 Query: 181 APHGIRANCVVPGLIDTPLIYKQISSQYASAEEM---VAARNAALPGGRMGDAWDVANAA 237 A + IR N V PG +T + + + + + + + + +P ++ D+A+A Sbjct: 176 AEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235 Query: 238 LFLASDEAKFITGVCLPVDGGQS 260 LFL S +A IT L VDGG + Sbjct: 236 LFLVSGQAGHITMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (320), Expect = 8e-38 Identities = 83/261 (31%), Positives = 128/261 (49%), Gaps = 16/261 (6%) Query: 1 MGTALLEGNFAVITGAASRRGLGKATARLFAEHGATVAILD--LDEADAREAAASLGPRH 58 M +EG A ITGAA +G+G+A AR A GA +A +D ++ + ++ RH Sbjct: 1 MNAKGIEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARH 58 Query: 59 V-GMACNVTDLASVRTVMDALVSQWGRIDILVNNAGITQPLKIMEIAPENYDAVLDVNLR 117 +V D A++ + + + G IDILVN AG+ +P I ++ E ++A VN Sbjct: 59 AEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST 118 Query: 118 GTLYCSQAVIPHMRSRKQGKIVNLSSVSAQRGGGIFGGPHYSAAKAGVLGLTKAMARELA 177 G S++V +M R+ G IV + S A G Y+++KA + TK + ELA Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 178 PDNVRVNAICPGFIATDITGGLLTPEK---------LEEIKAGIPMGRPGTADDVAGCAL 228 N+R N + PG TD+ L E LE K GIP+ + D+A L Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 229 FLASDLSAYVTGSEVDVNGGS 249 FL S + ++T + V+GG+ Sbjct: 237 FLVSGQAGHITMHNLCVDGGA 257
>PF06291#Lambda prophage Bor protein Length = 102 Score = 27.7 bits (61), Expect = 0.026 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Query: 3 LRHLLTAAVLSLCAGPAAAQTYQLSHNAAAGNPKDVASLKF--AELVEQKSEGRLKIDVG 60 ++ +L +A L++ A QT+ + + A PK+ + F + + ++K+ KI G Sbjct: 6 MKKMLFSAALAMLITGCAQQTFTVGNKPTAVTPKETITHHFFVSGIGQKKTVDAAKI-CG 64 Query: 61 GSAQF--GDDAETITNMRLGTIAF 82 G+ + +T N LG I Sbjct: 65 GAENVVKTETQQTFVNGLLGFITL 88
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 29.6 bits (66), Expect = 0.030 Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 463 LADNNSFEQWEIEGEKRIEQRANALARSWLEHYE 496 L D + QWE + +R+E+ + L + LE Y+ Sbjct: 51 LKDKENAIQWEKKEAERVEKNLDTLEKEALELYK 84
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 23.9 bits (51), Expect = 0.042 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 37 GSGEGAGSGSMGGSGGGSS 55 G+ +G+GSG GG GG S Sbjct: 27 GTPDGSGSGGGGGKGGSKS 45
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.1 bits (62), Expect = 0.040 Identities = 12/21 (57%), Positives = 17/21 (80%) Query: 217 SGSEARYRAKSFRDRLTQRLK 237 + +EA+ +AK+ RD LTQRLK Sbjct: 75 AAAEAQAKAKANRDALTQRLK 95
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.5 bits (66), Expect = 0.002 Identities = 9/22 (40%), Positives = 15/22 (68%) Query: 48 VEAEHRGRGIGRALVGRAAEAA 69 V ++R +G+G AL+ +A E A Sbjct: 97 VAKDYRKKGVGTALLHKAIEWA 118
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 48.0 bits (114), Expect = 2e-09 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 63 ATQALVGHIQLAVDWRNGVARIGRVMVAPTMRGQGLAKSLLEAALEQAFSHPEIERTELN 122 +G I++ +W NG A I + VA R +G+ +LL A+E A + L Sbjct: 72 LENNCIGRIKIRSNW-NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH-FCGLMLE 129 Query: 123 VYSWNSAAIRTYNKVGF 139 N +A Y K F Sbjct: 130 TQDINISACHFYAKHHF 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 7e-14 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 1/136 (0%) Query: 4 APSRKKQPQRVRRQLLEVAARLSLEQGVAAVTLDAVSQAAGVSKGGLLHHFPNKLALLDA 63 A K++ Q R+ +L+VA RL +QGV++ +L +++AAGV++G + HF +K L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 64 LFDDLVARFDSALDEAMAGDDVEKGRFTRAYLGVCFALDAEAEAQGWQMLTIALLAEPHL 123 +++ + E A + R L E + ++ I + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRR-LLMEIIFHKCEFV 120 Query: 124 KERWREWVARRSAQFA 139 E A+R+ Sbjct: 121 GEMAVVQQAQRNLCLE 136
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 70.8 bits (173), Expect = 2e-16 Identities = 47/207 (22%), Positives = 72/207 (34%), Gaps = 11/207 (5%) Query: 97 VSQEPSEMTPTEADVILPAEEMPASQVEESDVIASIAPVETVIPQERPDPEEVLKPEVEK 156 V + P+ P ++ PA+ P V+ PV P+ P PE + V Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPP-----EPVVEPEPEPEPIPEPPKEAPVVI 94 Query: 157 VEPKKEPAKKKKVVRKKAGEGGTQAKSQKKGKADGAETATAAAATGESRGASREIGNAAV 216 +PK +P K K V+K Q K K + A ++ + Sbjct: 95 EKPKPKPKPKPKPVKKVE-----QPKRDVKPVESRPASPFENTAPARPTSSTATAATSKP 149 Query: 217 SNYPGKVRRKLTRA-IRYPAEARRQGLRGVAHVSFTVTSGGGVARVGITKSAGSPVLDQA 275 R L+R +YPA A+ + G V F VT G V V I + + + ++ Sbjct: 150 VTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFERE 209 Query: 276 ALETVRRAAPFPAIPAGAGRDRWEFNI 302 +RR P P F I Sbjct: 210 VKNAMRRWRYEPGKPGSGIVVNILFKI 236
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 0.001 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 32 VVLVGPSGCGKSTLLRMIAGLESVTGGEIRIAGRRVNELAPKDRDIAMVFQSYALY 87 VVL G G GKSTL+ + GL+ + I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.4 bits (229), Expect = 1e-24 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 20/251 (7%) Query: 5 GKSVIVTGGGKGIGRATVALLAARGAQVVALSRTQSDLDELSSQTGCHG-----IVADLA 59 GK +TG +GIG A LA++GA + A+ L+++ S AD+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 60 DAAAARAA----MVEAGTCDILVNCAGTNVLESLIDMTDDGYDVVMNTNLRAALICAQEF 115 D+AA E G DILVN AG + ++D+ ++ + N ++ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 116 ARARMAAGGGGAIVNVTSIAGHRGFQNHVCYAASKAGLEGATRVMAKELGPYGIRVVAIA 175 ++ M G+IV V S + YA+SKA T+ + EL Y IR ++ Sbjct: 128 SKY-MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 176 PTITMTELAAAAWADPQKSEPMMVRH---------PAGRFATVDDVARSIAMLLSSDAEM 226 P T T++ + WAD + +++ P + A D+A ++ L+S A Sbjct: 187 PGSTETDMQWSLWAD-ENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 227 VSGAVLPVDGG 237 ++ L VDGG Sbjct: 246 ITMHNLCVDGG 256
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 26.6 bits (58), Expect = 0.026 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 28 GRSFAIFRTADDQYYATDDICTHEYAHISDG 58 G F RT ++ Y +++ HE+ H G Sbjct: 480 GTFFTYERTPEESIYTLEELFRHEFTHYLQG 510
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (320), Expect = 9e-38 Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 13/257 (5%) Query: 8 LSGRVAVVTGAGQGIGLACAEALCEAGAAVVLTDISAERCEAGRAALAAKGYVVETDLID 67 + G++A +TGA QGIG A A L GA + D + E+ E ++L A+ E D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 IGDSASVNAVADRLAVSGRAADILVANAGIAHAGVPAEELSDADWERMIGINLSGAFRSC 127 + DSA+++ + R+ DILV AG+ G LSD +WE +N +G F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 128 RAFGRHMLAKGRGSIVTIGSMSGTIVNRPQQQVH-YNAAKAGVHHLTRSLAAEWAARGVR 186 R+ ++M+ + GSIVT+GS P+ + Y ++KA T+ L E A +R Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPA---GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 187 VNSVAPTYIDTPL--LTFAKED------KPMYEQWLDMTPMHRLGQPDEIASVVLFLASD 238 N V+P +T + +A E+ K E + P+ +L +P +IA VLFL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 239 ASSLMTGSIVAADAGYT 255 + +T + D G T Sbjct: 242 QAGHITMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 152 bits (385), Expect = 2e-47 Identities = 91/258 (35%), Positives = 133/258 (51%), Gaps = 14/258 (5%) Query: 8 LNGRAAFVTGGSRGIGFACAEALGEAGARVAISARSRDEGEKAVRQLRQKGIEAIYLPAD 67 + G+ AF+TG ++GIG A A L GA +A + ++ EK V L+ + A PAD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 ISNESAAQQVVRQAAAELGGLDILVNNAGIARHCDSLKLEPETWDEVINTNLTGLFWCCR 127 + + +A ++ + E+G +DILVN AG+ R L E W+ + N TG+F R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 128 AAIETMSAAGRGSIVNIGSISGYISNLPQNQV-AYNASKAGVHMLTKSLAGEFAKSNIRI 186 + + M GSIV +GS + +P+ + AY +SKA M TK L E A+ NIR Sbjct: 126 SVSKYMMDRRSGSIVTVGSNP---AGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 187 NAVAPGYIETAMTQG--GLDDPEWSKIW-------LGMTPLGRAGKASEVAAAVLFLASD 237 N V+PG ET M ++ I G+ PL + K S++A AVLFL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGI-PLKKLAKPSDIADAVLFLVSG 241 Query: 238 AASYITGSVLTIDGGYTI 255 A +IT L +DGG T+ Sbjct: 242 QAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 74.3 bits (182), Expect = 4e-18 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 6/149 (4%) Query: 8 VMITGASAGIGQETARVFSAAGYPLLLIARRSELIEAMALPNML------AVAADVRDYD 61 ITGA+ GIG+ AR ++ G + + E +E + A ADVRD Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 62 ALASAIRQGEARFGPVDCLINNAGVSRLARLDEQDPAQWRDLVDINCLGVLNGMHAVAPG 121 A+ + E GP+D L+N AGV R + +W +N GV N +V+ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 122 MKERRCGTIVNVSSTQAARSIRTMTSMAA 150 M +RR G+IV V S A +M + A+ Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYAS 159
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (341), Expect = 6e-41 Identities = 84/252 (33%), Positives = 122/252 (48%), Gaps = 13/252 (5%) Query: 15 GKTVVVTGAATGIGRAVAEAFATKRARVALLDRDAAVSDVAVS----LGTGHIAHVADVT 70 GK +TGAA GIG AVA A++ A +A +D + + VS A ADV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 71 DEQGVERAVKSVTEAFGRIDILINNAGIGPLAPAESYPTAEWDRTLAVNLKGAFLMARAI 130 D ++ + G IDIL+N AG+ S EW+ T +VN G F +R++ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 131 APGMLEQGSGRIVNMASQAAIIGIEGHVAYCASKAGIIGMTNCMALEWGPRGVTVNAVSP 190 + M+++ SG IV + S A + AY +SKA + T C+ LE + N VSP Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 191 TVVETELGLTGWAGEKGERARAA---------IPTRRFAKPWEIAASVLYLAGGAAAMVN 241 ET++ + WA E G IP ++ AKP +IA +VL+L G A + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 242 GANLMIDGGYTI 253 NL +DGG T+ Sbjct: 248 MHNLCVDGGATL 259
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 60.0 bits (145), Expect = 6e-13 Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 22/207 (10%) Query: 20 DIALDPETTALLVIDIQNTYLDPKDTPEETARWQPFYERMRKTVIPNTARLIDECRKRKV 79 DP LL+ D+QN ++D + + N +L ++C + + Sbjct: 23 SWVPDPNRAVLLIHDMQNYFVDA---------FTA-GASPVTELSANIRKLKNQCVQLGI 72 Query: 80 EVIF-ARIACLKPDGRDRSLSQK--KPGFNYLLLPKELPEGQIVPELEPRSDEIVVTKTT 136 V++ A+ PD DR+L PG N E +I+ EL P D++V+TK Sbjct: 73 PVVYTAQPGSQNPD--DRALLTDFWGPGLN-----SGPYEEKIITELAPEDDDLVLTKWR 125 Query: 137 DSALTGTNLRLILHNMGIKDVICCGIFTD-QCVSSTVRSLADESFGVVVVDDCGAAATDD 195 SA TNL ++ G +I GI+ C+ + + E V D A + + Sbjct: 126 YSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFM-EDIKAFFVGDAVADFSLE 184 Query: 196 LHRRELEIINMIYCHVVSLEEVLTFFR 222 H+ LE V + +L + Sbjct: 185 KHQMALEYAAGRCAFTVMTDSLLDQLQ 211
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 40.9 bits (96), Expect = 9e-06 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 4/40 (10%) Query: 368 ITIDAAGAIGMDHEIGSLEVGKKADIVIIDMR----KPHL 403 TI+ A A G+ HEIGSLEVGK+AD+V+ + KP + Sbjct: 409 YTINPAIAHGLSHEIGSLEVGKRADLVLWNPAFFGVKPDM 448
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.1 bits (68), Expect = 0.018 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%) Query: 17 CDVLIRDGKIAGFGR-----------FEAEPGMAVEDGGNAIVVPGLIDAHTHL 59 D+ ++DG+IA G+ PG V G IV G +D+H H Sbjct: 86 ADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHF 139
>SECA#SecA protein signature. Length = 901 Score = 28.3 bits (63), Expect = 0.038 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 125 NVVYGQRVRGVSKDDAREIGMKWIDTVGLSGYDAKFPHQLSGGMKQRVGLARALAADTDV 184 +Y QR + D E + V + DA P Q M GL L D D+ Sbjct: 657 RAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDL 716 Query: 185 IL-MDEAFSALDPLIRGDMQDQLLQLQRNLAKT 216 L + E L +++++L + + Sbjct: 717 DLPIAEWLDKEPELHEETLRERILAQSIEVYQR 749
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.003 Identities = 44/256 (17%), Positives = 74/256 (28%), Gaps = 13/256 (5%) Query: 22 EAEKTEPAAAEAAAGPDAAKSKPADISTSEAAEAGEVRTGEVESNEAGIGEPPLPAGDPK 81 E + TE A +A + A+ T+E A++G E+ E E A K Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS------ETKETQTTETKETATVEK 1108 Query: 82 EGTPQEETE-MEEARADAAAAAFDAELPHATNGELPEAKRRQATGAGALAAGILGGLIAL 140 E + ETE +E + + E + A+ T Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADT 1168 Query: 141 AGAGVLQYAGYVPAPGPEQPGTEQNLASEI--EAIKAELQAQAPAAPVDVAPLENRLAAL 198 + N E A Q + + +R + Sbjct: 1169 EQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVR 1228 Query: 199 EQAAR-EPGAAAAGAPEIKALEAEVTNLTNEMAALKTELAEARQAADAARAELAGRIDQA 257 EP ++ AL + TN A L A+A+ A ++ I Q Sbjct: 1229 SVPHNVEPATTSSNDRSTVALCDLTSTNTN--AVLSDARAKAQFVALNVGKAVSQHISQL 1286 Query: 258 EQKLNEPANDIEMAKA 273 E NE ++ ++ Sbjct: 1287 EMN-NEGQYNVWVSNT 1301
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.4 bits (118), Expect = 1e-08 Identities = 71/360 (19%), Positives = 140/360 (38%), Gaps = 31/360 (8%) Query: 53 LGLIGLFQFLPSLVLILVTGSVADRYNRRAIMGICMLVSTLCGAAL--LLLTVTGLFSPW 110 L L L QF + VL G+++DR+ RR + L+ +L GAA+ ++ W Sbjct: 49 LALYALMQFACAPVL----GALSDRFGRRPV-----LLVSLAGAAVDYAIMATAPFL--W 97 Query: 111 PVYAILVVFGIERAFLGPASQSLAPNLVPAEDLPNAIAWNSTSWQTAMIVGPVAGGLLYG 170 +Y +V GI A G + + ++ ++ + S + M+ GPV GGL+ G Sbjct: 98 VLYIGRIVAGITGA-TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG 156 Query: 171 FGPTVPYAVSLGFFAAGALMVFAV---PKPARRSPPSAANWQTITAGFRYIKAEKIVLGA 227 F P P+ + L + R P + FR+ + +V Sbjct: 157 FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLA-SFRWARGMTVVAAL 215 Query: 228 ISLDLFAVLLGGA-VALMPVFARDVLTLGPWGLGLLRAAPGV-GAVGMAVWLAAHPIRNR 285 +++ L+G AL +F D +G+ AA G+ ++ A+ R Sbjct: 216 MAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLG 275 Query: 286 AGLYMFVGVALFGLATVVFGLSATPWISIAALVVMGASDMISVYVREILITLWTPDELRG 345 + +G+ G ++ + W++ +V++ + + ++ +L +E +G Sbjct: 276 ERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQ-VDEERQG 334 Query: 346 RVNAVNMVFVGASNELGEFRAGMMASGFGTVFAVVFG---GAGTLLVSLLWALGFPQLRR 402 ++ ++ +G F ++A G + + L+ L P LRR Sbjct: 335 QLQGSLAALTSLTSIVGPL-------LFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.007 Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 91 IYEIYLRPEYQGIGLGRVLFGEAKSLLKSLGCEGLVVWCLEDSANAYNFFHSAG 144 I +I + +Y+ G+G L +A K GL++ + + +A +F+ Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHH 145
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 189 bits (482), Expect = 2e-54 Identities = 106/448 (23%), Positives = 188/448 (41%), Gaps = 90/448 (20%) Query: 1 MSIRNIAIIAHVDHGKTTLVDELLKQSGSFRENQRVAE--RMMDSNELEKERGITILAKA 58 M I NI ++AHVD GKTTL + LL SG+ E V + D+ LE++RGITI Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 59 TSVEWKGTRINIVDTPGHADFGGEVERILSMVDGAIVLVDAAEGPMPQTKFVVGKALKVG 118 TS +W+ T++NI+DTPGH DF EV R LS++DGAI+L+ A +G QT+ + K+G Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 119 LRPIVAINKIDRPDARHEEVINEVFDLFAA----------------------------LD 150 + I INKID+ V ++ + +A ++ Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 151 ATDEQLD--------------------------FPILYGSGRNGWMNVAPEGPQDQGLAP 184 D+ L+ FP+ +GS +N G+ Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNN-----------IGIDN 229 Query: 185 LLDLVLDHVPEPS-VGEGPFRMIGTILEANPFLGRIITGRIHSGSIKPNQAVKVLGQDGK 243 L++++ + + G+ +E + R+ R++SG + +V++ + Sbjct: 230 LIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEK--- 286 Query: 244 VLESGRISKILAFRGIERQPIEEAHAGDIVAIAGLS---KGTVADTFCDPAINEPLKAQP 300 E +I+++ E I++A++G+IV + + DT P P Sbjct: 287 --EKIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPLP 344 Query: 301 IDPPTVTMSFLVNDSPLAGTEGDKVTSRVIRDRLFKEAEGNVALKIEESSEKDSFYVSGR 360 + TV P + + + D L + ++ + L+ S +S Sbjct: 345 LLQTTV--------EPSKPQQREML-----LDALLEISDSDPLLRYYVDSATHEIILSFL 391 Query: 361 GELQLAVLIETMRRE-GFELAVSRPRVV 387 G++Q+ V ++ + E+ + P V+ Sbjct: 392 GKVQMEVTCALLQEKYHVEIEIKEPTVI 419 Score = 38.7 bits (90), Expect = 7e-05 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 395 QLLEPIEEVVIDVDEEHSGVVVQKMSERKAEMAELRPSGGNRVRLVFFAPTRGLIGYQSE 454 +LLEP I +E+ + A + N V L P R + Y+S+ Sbjct: 534 ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANI-VDTQLKNNEVILSGEIPARCIQEYRSD 592 Query: 455 LLTDTRGTAIMNRLFHDYQPYKGE 478 L T G ++ Y GE Sbjct: 593 LTFFTNGRSVCLTELKGYHVTTGE 616
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.7 bits (103), Expect = 4e-07 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 11/130 (8%) Query: 148 GAVPLVNENDTTATCGTRVGDNDRLAAWIAEIINADLLILLSNVDGLFMKDPRNNPLTPM 207 G VP++ E+ V D D +AE +NAD+ ++L++V+G + T Sbjct: 195 GGVPVILEDGEIKGVEA-VIDKDLAGEKLAEEVNADIFMILTDVNGAAL-----YYGTEK 248 Query: 208 LTEVESITREIEAMATQSVDPYSSGGMISKIEAG-KIAMNAGCRMIIANGTRSHPLYAIE 266 + + E E + +G M K+ A + G R IIA+ ++ + Sbjct: 249 EQWLREVKVE-ELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGK 307 Query: 267 SGGPSTHFIP 276 +G T +P Sbjct: 308 TG---TQVLP 314
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 25.9 bits (57), Expect = 0.007 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 2 AEIDKERLRAMLAT---ADPVMLFTAIRAAQEDLGRRVDRRGAQVTPEE 47 A IDK+ LA AD M+ T + A G ++ +V EE Sbjct: 211 AVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEE 259
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.5 bits (66), Expect = 0.008 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 51 LVIHWVGGVHTELRLPKRRRGQRNATPDDIVEAVRQLVLIANDDVIAGVLNRNGL-TTGN 109 L I+ GG + LP + + P ++E Q + A +G+ R+G N Sbjct: 70 LTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQ----SGLTGRDGPDNPAN 125 Query: 110 GNR 112 G R Sbjct: 126 GPR 128
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.6 bits (77), Expect = 0.002 Identities = 57/273 (20%), Positives = 89/273 (32%), Gaps = 13/273 (4%) Query: 62 AASTLPVFFLSILAGAIADNFSRRWVMFAGHCLLALASTTLVISVGIGFISPWLILGLGF 121 A L F + + GA++D F RR V+ LA A+ I + +L +G Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLVS---LAGAAVDYAI---MATAPFLWVLYIGR 103 Query: 122 LAGCGFALNDPAWHASIGDILHKRDIPAAVTLTSVGYNIVRSGGPALGGVILAFFGPLTA 181 + A I DI + S + GP LGG+ + F P Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL-MGGFSPHAP 162 Query: 182 FALAALCDLTP--LGAIWRTKWHVRA-SPLPREKITTAIYDGLRFTAMSFEIRSAVARAT 238 F AA + G + H PL RE + AV Sbjct: 163 FFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV--FF 220 Query: 239 LFGLASISILALLPIVVRDQLASGPIVYGILLAGFG-SGAFVAGMSNSFLRRIMSQNKLV 297 + L AL I D+ GI LA FG + M + + + + + Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 298 AVASVACAACCLSLALTSSVAVAAFALALGGAG 330 + +A + LA + +A + L +G Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIMVLLASG 313
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 44.2 bits (104), Expect = 7e-07 Identities = 34/199 (17%), Positives = 59/199 (29%), Gaps = 36/199 (18%) Query: 266 AYRNVAAIGLN---GLIHCSGTLIGRRTVLTAAHCVENYQNYIAAGRMTVSFGSLFFRPE 322 Y V I + G SG ++G+ T+LT H V+ F Sbjct: 86 HYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVD--------ATHGDPHALKAFPSA 137 Query: 323 KNYVVTGFDFPRDPAAGFFFNPQTY----EDDIAVLYVAEDVDSAYPPSSLHVGDRPTWA 378 N G F Q E D+A++ + + + + + A Sbjct: 138 INQDNYPN--------GGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNA 189 Query: 379 EIKDKPIAIIIVGFGFNVVRNDAVGAGIKREAAIHADGYTNRSFFFQRSNPNTCKGDSGG 438 E + I + G+ D A + + + G+SG Sbjct: 190 ETQVNQ-NITVTGYPG-----DKPVATMWESKGKITYLKGEAMQYDLSTTG----GNSGS 239 Query: 439 PSFLIVNDDFVLIGVTSTG 457 P + N+ +IG+ G Sbjct: 240 P---VFNEKNEVIGIHWGG 255
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 26.4 bits (58), Expect = 0.033 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 20/75 (26%) Query: 3 ASGVVVYVSCQPVDFRKGAASLMALVRDGGLDPF-----------------NGALYVFRS 45 G +V R G LM L + PF NG +Y+ Sbjct: 781 TRGAIVRAE---FKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGM 837 Query: 46 KRADRVRIVWWDGSG 60 A +V++ W + Sbjct: 838 PLAGKVQVKWGEEEN 852
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 31.2 bits (70), Expect = 0.017 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 8/51 (15%) Query: 209 NDELVEQVLQDGLFQEMMPSNLDRRRMDRIASRPPEARELAALLGGQRVHL 259 ++E +Q+L+D L EM P + D RR+ P + REL+ LL R HL Sbjct: 414 DEESAKQILKDTLTGEMSPLSTDVRRIT-----PKKLRELSDLL---RTHL 456
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 29.4 bits (66), Expect = 0.026 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 14/69 (20%) Query: 142 LRDSGVPFHVITVLSWETLSQPDELFDFYISEGIERISFNIEEIEGINKGSSLKRPDVKE 201 L+++ V I L E L L + +IS+ I + +K Sbjct: 62 LKNNLVEIEYIEDLISEVLVSSVALENKFISQFIL--------------EAEIKTDFTIN 107 Query: 202 AFRAFLRRF 210 + + Sbjct: 108 LLKDYFSSL 116
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 48.1 bits (114), Expect = 2e-08 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 17/208 (8%) Query: 29 ATTVFIECKTAAGTSRGSGVVVSVEGHVLTARHVLGLKPNDPMPGAIECAGSIGVADRNA 88 A +I+ + GT SGVVV + +LT +HV+ DP + + Sbjct: 88 APVTYIQVEAPTGTFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQ-DNYPN 145 Query: 89 TRAMIAQPITVG--VDAALLQFQDQRDYE-------FMRVCKFEDWMIRRKIFVAGFPGM 139 Q D A+++F + + + + + I V G+PG Sbjct: 146 GGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD 205 Query: 140 TETGVPSFREGVLSTTRRNSKGVLETDGQTIAGMSGGPAFSSNLKGLVGIVIGA--QFTP 197 +G ++ + + ++ D T G SG P F+ ++GI G Sbjct: 206 KPVATMWESKGKITYLKGEA---MQYDLSTTGGNSGSPVFNEK-NEVIGIHWGGVPNEFN 261 Query: 198 QGTVDYFGILPIEQRYIDDFQLTVSDQP 225 + ++ I+D DQP Sbjct: 262 GAVFINENVRNFLKQNIEDIHFANDDQP 289
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 100 bits (249), Expect = 4e-25 Identities = 47/229 (20%), Positives = 80/229 (34%), Gaps = 21/229 (9%) Query: 411 SVIGEDTRAAVLDTTGFPSRAIVQILFETRAREQHLCTGTLVSPNTVLTAAHCIHSGTRT 470 ++ + R + DTT + I + +G +V +T+LT H + + Sbjct: 69 VILPNNDRHQITDTTNGHYAPVTYI-QVEAPTGTFIASGVVVGKDTLLTNKHVVDAT--H 125 Query: 471 GEPFQNFRIIPGRNLGAAPFGRCLGVGASVLAGWTASATTDQSRYYDLGAIKLNCNIGDT 530 G+P N P G + +G A + N +IG+ Sbjct: 126 GDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAI------VKFSPNEQNKHIGEV 179 Query: 531 TGWLGVRTIGNDEAIDTV-VQGYAADRAPTGRQWVSEDKLRILWQLKGFYQNDTFGGTSG 589 + + + V GY D P W S+ K+ L Y T GG SG Sbjct: 180 VKPATMSNNAETQVNQNITVTGYPGD-KPVATMWESKGKITYLKGEAMQYDLSTTGGNSG 238 Query: 590 APVFAKDSTDTLIGVHTNGLHGAEQPWKSN-NAFTRITSERLSLIQQWI 637 +PVF + + +IG+H G+ + N I + ++Q I Sbjct: 239 SPVF--NEKNEVIGIHWGGV-------PNEFNGAVFINENVRNFLKQNI 278
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 41.0 bits (96), Expect = 4e-06 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 10/123 (8%) Query: 135 GSVPIINENDTVATTEIRYGDNDRLAARVATMVGADLLVLLSDIDGLYTAPPHLDPNARF 194 G VP+I E+ + E D D ++A V AD+ ++L+D++G + ++ Sbjct: 195 GGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQW 251 Query: 195 LETVAEITPEIEAMAGGAASELSRGGMRTKIDAG-KIATTAGCAMIIASGKPDHPLAAIE 253 L E+ E E G M K+ A + G IIA + + A+E Sbjct: 252 LR---EVKVE-ELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH--LEKAVEALE 305 Query: 254 AGA 256 Sbjct: 306 GKT 308
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 29.8 bits (67), Expect = 0.004 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 11 GLFGGSFNPPHDGHALVAETALRRLGLDQLWWMVTPGNPLKDRNHLAPLGERIAMSEK-I 69 ++ GSF+P GH + E R DQ++ V NP K + + ER+ K I Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVL-RNPNK--QPMFSVQERLEQIAKAI 57 Query: 70 ARNPRIKVTAFE 81 A P +V +FE Sbjct: 58 AHLPNAQVDSFE 69
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 48.1 bits (114), Expect = 5e-08 Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 22/308 (7%) Query: 6 RRIRRGAAVAALFLSVIGPT--------AAQAPADAGAAKAAPPDPAADLAVRRDSTASE 57 R+++ G A A+ L+V+G +A A + A + ++ + Sbjct: 13 RKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLK 72 Query: 58 LEALSKTITLSRDRSEALEKTIAEIDKSNETLRDALVDSAAKRQEFERRISDGERTLGDL 117 LS +D ++ L + ++ + +L + A+K QE E R +D E+ L Sbjct: 73 NSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGA 132 Query: 118 RVKEDVVRRSLRARRGLLAEVLAALQRMGRNPPPAILVTPEDALGSVRSAILLGAVVPEI 177 ++ A + A + + A+ + L A + Sbjct: 133 MNFSTADSAKIKTLEAEKAALAARKADLEK----ALEGAMNFSTADSAKIKTLEAEKAAL 188 Query: 178 REQTDSLVADLKALADIRSGIAREREELTAAMTARLEEERRMSMLVAEKEKLRQRNAADL 237 + L L+ + + + + + L A A + + + ++A + Sbjct: 189 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 248 Query: 238 AAEQRKAEELALQAENLGGLISSLENEISSVREAAAAARAEE----------EERRRMSE 287 + + L + L + N ++ AE+ E + ++ Sbjct: 249 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLN 308 Query: 288 AEREAARE 295 A R++ R Sbjct: 309 ANRQSLRR 316 Score = 29.3 bits (65), Expect = 0.042 Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 21/237 (8%) Query: 68 SRDRSEALEKTIAEIDKSNETLRDALVDSAAKRQEFERRISDGERTLGDLRVKEDVVRRS 127 E +TL A++ E E+ + K + Sbjct: 160 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 219 Query: 128 LRARRGLLAEVLAALQRMGRNPPPAILVTPEDALGSVRSAILLGAVVPEIREQTDSLVAD 187 A A++ AL+ + ++ + + + L Sbjct: 220 KAALAARKADLEKALEGA-----MNFSTADSAKIKTLEAEKA------ALEARQAELEKA 268 Query: 188 LKALADIRSGIAREREELTAAMTARLEEERRMSMLVAEKEKLRQRNAADLAAEQRKAEEL 247 L+ + + + + + L A A E+ + RQ DL A + ++L Sbjct: 269 LEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQL 328 Query: 248 ALQAENLGGLISSLENEISSVREAAAAARAEE----------EERRRMSEAEREAAR 294 + + L E S+R A+R + EE+ ++SEA R++ R Sbjct: 329 EAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 48.3 bits (115), Expect = 3e-09 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 21/156 (13%) Query: 10 ILVVFPFSLALAALSDLLTMTIPNRVSLVLLVSFFFVAPLAGLDLAQLGLHTVAAGLIFA 69 ++ + L DL M +P++++L LL L G + AG + Sbjct: 136 AALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVL 195 Query: 70 VSF-----ALFAANVMGGGDAKLLTASAAWFGFNESLVTFLVYVSFFGGFLTLIVLLLRS 124 S L MG GD KLL A AW G+ ++L L+ S G F+ + ++LLR+ Sbjct: 196 WSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGW-QALPIVLLLSSLVGAFMGIGLILLRN 254 Query: 125 KENLILAARIPVPRLLLTAKKIPYGIAIALGGFAAY 160 +K IP+G +A+ G+ A Sbjct: 255 HH---------------QSKPIPFGPYLAIAGWIAL 275
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 113 bits (284), Expect = 1e-28 Identities = 71/331 (21%), Positives = 122/331 (36%), Gaps = 50/331 (15%) Query: 164 AVDLARAFLKGGEATTRNITAQGNNGDAD----IFAEDRQNS--------------QIVN 205 A DL A D I A + N+ +++ Sbjct: 279 ASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIA 338 Query: 206 LLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGISFRNPANLGDAIAVGTNALI 265 L I QV ++ +AEV LG + + + AIA Sbjct: 339 QLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNK 397 Query: 266 KGSIG---PTTISSY---------------INAMEQAGVMRTLAEPSLTAISGQEAKFYV 307 G++ + +SS+ + A+ + LA PS+ + EA F V Sbjct: 398 DGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNV 457 Query: 308 GGEFRLAGVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPT 367 G E + +T + TVER+ GI+L KP + + L+IE +VS Sbjct: 458 GQEVPVLTGS-QTTSGDNIFNTVERK----TVGIKLKVKPQINEGDSVLLEIEQEVSSVA 512 Query: 368 YEGSVVTGNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPGAS 427 + + +S NT R + +V + SG ++V+ GL+ ++ +P Sbjct: 513 D--AASSTSSDLGATFNT------RTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLG 564 Query: 428 KIPILGTLFRSKDFQRSETELVIIATPYLVR 458 IP++G LFRS + S+ L++ P ++R Sbjct: 565 DIPVIGALFRSTSKKVSKRNLMLFIRPTVIR 595
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.1 bits (86), Expect = 1e-04 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 10/137 (7%) Query: 44 EAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELA 103 + + + R G V AA + A +L++ + L Sbjct: 17 TVLNQALSRAG---------YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 104 PLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEP 163 + + P V+V+ N + G +Y+ P + +++ + +P+ P Sbjct: 68 RIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 164 LGRSLAFIGAKGGCGSS 180 G S Sbjct: 127 SKLEDDSQDGMPLVGRS 143
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.030 Identities = 10/61 (16%), Positives = 23/61 (37%) Query: 370 TVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIV 429 +V E+I + S+ D + G +G+ + D + G + + ++ Sbjct: 718 SVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLY 777 Query: 430 G 430 G Sbjct: 778 G 778
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.7 bits (69), Expect = 0.004 Identities = 21/108 (19%), Positives = 33/108 (30%) Query: 98 AVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQ 157 + + E L + Q +G+ E A D D + GA Sbjct: 23 GTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 158 LGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSA 205 +G+ A Y + EP + L +L AE+ L A Sbjct: 83 MGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.003 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 275 AVLARMRKRVGPHLPIIGVGGVCSAETAAEKIRAGA 310 +L R++K P LP++ + + TA + GA Sbjct: 64 DLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGA 98
>INTIMIN#Intimin signature. Length = 939 Score = 28.5 bits (63), Expect = 0.012 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 28 GRYSMQKSETGLARLDTETGEVTLCQEKGGELICRMAADERAA 70 G+Y+ + + +A +D +G+VTL +EKG I +++D + A Sbjct: 791 GKYTWRSANPAIASVDASSGQVTL-KEKGTTTISVISSDNQTA 832
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 9e-16 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 1 MPEMTIIIADDHPLFRGAMRQALSGMAGAPAIVEAGDFAAARRAAADNPDADLMLLDLTM 60 M TI++ADD R + QALS + + A R A DL++ D+ M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGD-GDLVVTDVVM 57 Query: 61 PGVSGLSGLIALRAEFPSLPVMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIRE 116 P + L ++ P LPV+++SA + T +A + GA +L K + E+ Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 0.002 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 25/101 (24%) Query: 917 LVQNLVSNAIKYTLR-----GKVLVGVRRHGQTATIEVLDSGIGIPSSKFRTIFKEFARL 971 LVQ LV N IK+ + GK+L+ + T T+EV ++G + Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------ 306 Query: 972 EEGARTASGLGLGLSIVDRISRVL---NHPVGLQSKPGKGT 1009 T G GL V ++L + L K GK Sbjct: 307 -----TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN 342
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 113 bits (283), Expect = 3e-35 Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 11/141 (7%) Query: 1 MLNEFKEFIARGNVMDLAVGVIIGAAFSKIVDSVVNDLVMPVVGAITGGGFDFSNYFLPL 60 ++ EF+EF RGNV+DLAVGVIIGAAF KIV S+V D++MP +G + GG DF + + L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLI-GGIDFKQFAVTL 61 Query: 61 SASVTAPTLSAAREQGAVFAYGNFITVLINFLILAWIIFLLIKLVNRARASVERDKAPDP 120 + V YG FI + +FLI+A+ IF+ IKL+N+ E A Sbjct: 62 R-------DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAA-- 112 Query: 121 AAPPPQDILLLSEIRDLLRQR 141 P ++ +LL+EIRDLL+++ Sbjct: 113 -PAPTKEEVLLTEIRDLLKEQ 132
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 161 bits (410), Expect = 4e-49 Identities = 78/345 (22%), Positives = 134/345 (38%), Gaps = 43/345 (12%) Query: 1 MAVLVTGGAGYIGSHMVWSLLDGGEAVVVLDCLSTGF-------RWAVAPEARFYF--GD 51 M LVTG AG+IG H+ LL+ G VV +D L+ + R + + F F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 VGDRALLQRVFAENEIDSVVHFAGSAVVPESVANPLAYYENNTANTRTLIAATVEAGIRH 111 + DR + +FA + V V S+ NP AY ++N ++ I+H Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 FVFSSTAAVYGTQDTPDPVSET-AALRPQSPYGRSKLMSEMMLQDAAAAHDFRFVALRYF 170 +++S+++VYG + P S + P S Y +K +E+M + + LR+F Sbjct: 121 LLYASSSSVYGL-NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 171 NVAGADPLGRAGQSTLGATHLIKVACEAALGRRRKIDVLGTDYPTADGTGVRDYIHVSDL 230 V G P GR + T + G+ IDV G RD+ ++ D+ Sbjct: 180 TVYG--PWGRPDMALFKFTKAML------EGKS--IDVYN------YGKMKRDFTYIDDI 223 Query: 231 VAAHRSALAYLRAGGEPL---------------VANCGYGHGFSVLQVLDTVRQVSGRDF 275 A + V N G ++ + + G + Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283 Query: 276 MVDYAPRRPGDPAQIVADPSVARLKLDWVPTHASLEHIVRSAFDW 320 + P +PGD + AD + + P +++ V++ +W Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNW 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 6e-25 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 4 RVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLDTANPDVIVTDINMPRLDGFG 63 +L DD IR +L L+ AG++ + + + D++VTD+ MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKPFDPTKLIDAIER 118 + ++K +P+LV++ ++ +A + GA ++ KPFD T+LI I R Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 7e-05 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 50/126 (39%) Query: 475 IRNAVDHGLETPEKRVAAGKNPEGTVRLTAKHRSGRIVIELADDGAGINREKVRQKAIDN 534 + N + HG+ G + L +G + +E+ + G+ + Sbjct: 264 VENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKN--------- 306 Query: 535 DLIAADANLSDEEVDNLIFHAGFSTADKISDISGRGVGMDVVKRSIQALGG---RINISS 591 G G+ V+ +Q L G +I +S Sbjct: 307 ------------------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSE 336 Query: 592 KPGQGS 597 K G+ + Sbjct: 337 KQGKVN 342
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.5 bits (170), Expect = 4e-15 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 13/162 (8%) Query: 1 MSAPARVLVVDDSATMRGLISAVLN-ADPDITVVGQAADALEARQAIKQLDPDVVTLDIE 59 M+ A +LV DD A +R +++ L+ A D+ + AA A D D+V D+ Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG---DGDLVVTDVV 56 Query: 60 MPNMNGLEFLDKIMRLRP-MPVIMVSTLTHRGAEATIAALEIGAFDCVGKPQPGDTHPFR 118 MP+ N + L +I + RP +PV+++S I A E GA+D + KP Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMS--AQNTFMTAIKASEKGAYDYLPKPFDLT----- 109 Query: 119 DLADKVKAAARSQRKSMITSNRAAAPAATAVSDSRAGRKIVA 160 +L + A ++ + V S A ++I Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 4e-22 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMD 65 +L+ DD R +L AL + G+ + + + +A LV++D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 LL ++ A ++++AQ KA+ GA + L KPF + ++ I Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 126 GALK 129 K Sbjct: 120 AEPK 123
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 448 bits (1154), Expect = e-154 Identities = 138/568 (24%), Positives = 242/568 (42%), Gaps = 58/568 (10%) Query: 13 NLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDVTQISIALAEANV 72 L+ L I L VAG A+ V+ ++ P + TL+ L D I L + N+ Sbjct: 15 WLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNI 74 Query: 73 DFEVGTDGGSIQVPVGMTGKARLLLAERGLPSSANAGYELFDNVGSLGLTSFMQEVTRVR 132 + G+I+VP + RL LA++GLP G+EL D G++ F ++V R Sbjct: 75 PYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQ-EKFGISQFSEQVNYQR 133 Query: 133 ALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIR--ASATVGRSAASSI 190 ALEGE+ARTI+ + + +ARVH+ MP+ F + +++P+ASV + + S++ Sbjct: 134 ALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAV 193 Query: 191 RHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQSDLEKKIDNALA 250 HLV+S+V GL +VT++D +G LL + + L +V+S ++++I+ L+ Sbjct: 194 VHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILS 253 Query: 251 PFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQK-------------- 296 P +G N VTA+L+ ++ E + P ++T ++ Sbjct: 254 PIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPG 313 Query: 297 --SSQQQPDNAATV---------QQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTI 345 S+Q P N A + QN PQ + + + ++ E +NYE++ Sbjct: 314 ALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTN-SNSAGPRSTQRNETSNYEVDRTIR 372 Query: 346 ATVKNSYSIERLSIAVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDV 405 T N IERLS+AVVVN LA P +++++ + A G RGD Sbjct: 373 HTKMNVGDIERLSVAVVVNYKTLADGKPLPLT----ADQMKQIEDLTREAMGFSDKRGDT 428 Query: 406 VTLNAMDFVETQLLDQAVPGPGI-MEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQL 464 + + F + + + P + L L + VA+++ +RP + Sbjct: 429 LNVVNSPF--SAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRR 486 Query: 465 GFGGQAGKLEGEAAGLELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNLGDEAGFNRR 524 +A + + E + D+ L N+R Sbjct: 487 VEEAKAAQEQ------------------AQVRQETEEAVEVRLSKDEQLQQRRA---NQR 525 Query: 525 VK-EGPERRLARMVEISEERAAKILRKW 551 + E +R+ M + A ++R+W Sbjct: 526 LGAEVMSQRIREMSDNDPRVVALVIRQW 553
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 327 bits (841), Expect = e-113 Identities = 94/346 (27%), Positives = 181/346 (52%), Gaps = 9/346 (2%) Query: 8 DSKTEAPSEKKISDATEKGNVPFSREVTAFASTLAIYIFVVFFLSDGAANMAEALKDIFE 67 KTE P+ KKI DA +KG V S+EV + A +A+ ++ + ++ + E Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 68 Q---PEAWRLDTATDAVALISHVVLKCAALVLPVFILLILFGVGSSIFQNLPRPVLDRIQ 124 Q P + L ++ +V+L+ L P+ + L + S + Q + I+ Sbjct: 63 QSYLPFSQAL------SYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIK 116 Query: 125 PKWNRVSPAAGFKRIYGVQGLVEFGKSLFKIIVVSIVVVLVLWNDYFATLDMMFSDPVTI 184 P +++P G KRI+ ++ LVEF KS+ K++++SI++ +++ + L + I Sbjct: 117 PDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECI 176 Query: 185 FTTMISDLKQIIIVVLFATATLAIVDLFWTRHHWYTELRMTRQEVKDELKQSQGDPIVKS 244 + L+Q++++ ++I D + + + EL+M++ E+K E K+ +G P +KS Sbjct: 177 TPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKS 236 Query: 245 RLRSMQRDRARKRMISSVPRATLIIANPTHYAVALRYVREESDAPVVVAMGKDLVALKIR 304 + R ++ + M +V R+++++ANPTH A+ + Y R E+ P+V D +R Sbjct: 237 KRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVR 296 Query: 305 EIAEKNGIPVFEDPPLARSMFAQVSVDSVIPPVFYKAVAELIHRVY 350 +IAE+ G+P+ + PLAR+++ VD IP +A AE++ + Sbjct: 297 KIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 282 bits (722), Expect = 1e-95 Identities = 60/329 (18%), Positives = 152/329 (46%), Gaps = 6/329 (1%) Query: 18 LSQTEKAAAVLLAMGKSIAGKLLKFFTQSELQAIIAAAQSLRAVPPHELEALVNEFEDLF 77 L+ +KAA +L+++G I+ K+ K+ +Q E++++ L + + ++ EF++L Sbjct: 15 LTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELM 74 Query: 78 TEGAGLMDNAK-AMESILEEGLTPDEVDGLLGRRATFQSYEASIWDRLMDCDPVIIAQLL 136 + +LE+ L + ++ + ++ ++ + DP I + Sbjct: 75 MAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLG--SALQSRPFEFVRRADPANILNFI 132 Query: 137 AREHPQTIAYVLSMMPSSFGAKVLLQLSDKQRPEILNRAVNIKNVNPKAAAIIEARVIEI 196 +EHPQTIA +LS + + +L L + + + R + +P+ +E + + Sbjct: 133 QQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKK 192 Query: 197 IEEMEAD--RNSPGPAKIAEVMNELEKPQVDTLLASLETISTDSVKKVRPKIFLFDDILF 254 + + ++ ++ G + E++N ++ ++ SLE + ++++ K+F+F+DI+ Sbjct: 193 LASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVL 252 Query: 255 MPQRSRVQLFNDVSTDVITMALRGSAAELRESILASIGARQRRMIESDLAAGDAGINPRD 314 + RS ++ ++ + AL+ ++E I ++ R M++ D+ +D Sbjct: 253 LDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGP-TRRKD 311 Query: 315 IAIARRSITQEAIRLSASGQLELKEKEPE 343 + +++ I +L G++ + E Sbjct: 312 VEESQQKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 105 bits (263), Expect = 3e-31 Identities = 33/81 (40%), Positives = 57/81 (70%), Gaps = 3/81 (3%) Query: 125 SGMTANMDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIG 184 SG ++DLIMDIP+ + + LG +RM + L+ LT+G+ +ALD GEP++I++NG +I Sbjct: 48 SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107 Query: 185 RGEITVLEGDVTRFGVKLLEI 205 +GE+ V+ ++GV++ +I Sbjct: 108 QGEVVVVAD---KYGVRITDI 125
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 50.3 bits (120), Expect = 3e-09 Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 12/223 (5%) Query: 99 DSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPV 158 D + ++++ L G + + R L+ IE V V I +R + P Sbjct: 120 DPSITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPR 177 Query: 159 VGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLSTFSVIVPQSTL--LKTRVVSRK-G 215 +G+ + + A+ P + + +G + +P T+ + +++ S+ Sbjct: 178 LGQIETNPQFAQIVP--PSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWF 235 Query: 216 AGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTLSRLQAGDVIPFHD---GQDV 272 + R++ T++ L +++ + + A + L++ + L+ GD+I HD G Sbjct: 236 SSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPF 295 Query: 273 RVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIMS 315 + + + ++C+ G G + ++ + S +S Sbjct: 296 VLSIGNRKK--FLCQPGVVGKKIAAQILERIESTSQEDFEELS 336
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.9 bits (67), Expect = 0.009 Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 3 TGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEV 39 + + A+S A + LNT ++NI++ N G+ Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT 38
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.005 Identities = 27/197 (13%), Positives = 56/197 (28%), Gaps = 9/197 (4%) Query: 15 RRTAGQEEIKAAWRSVARAVHPDHNQDDPTANERFAEAGRAYELLRDPVRRSRYDWARRE 74 + E A R VA+ + + + NE E + + + Sbjct: 1053 KNEQDATETTAQNREVAKEAKSN-VKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 75 AELRRMEAMKEKMRGAEVP-------DEPVGAETAEEAISRIFGVEPQATSARPKSSARP 127 A++ + + ++V AE A E + EPQ+ + + +P Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 128 AER-ERAPVEAKTEPAAEAKQEQPKADALARRSIMPAADLVAAIVQRIRGRIAKTAEKVP 186 A+ + TE + + + + + R ++ VP Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 187 DLAVDVHASVEDVINLA 203 S D +A Sbjct: 1232 HNVEPATTSSNDRSTVA 1248
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.1 bits (140), Expect = 4e-12 Identities = 66/257 (25%), Positives = 104/257 (40%), Gaps = 17/257 (6%) Query: 8 MNGKRGVIMGVANNRSIAWGIAKALAEAGAEI-ALTWQGDALKKRVEPLAQELGAFMAGH 66 + GK I G A + I +A+ LA GA I A+ + + L+K V L E A Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 67 CDVTDLATIDAVFSALEEKWGKIDFVVHAIAFSDKDELTGRYLDTSRDNFARTMDISVYS 126 DV D A ID + + +E + G ID +V+ G S + + T ++ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNSTG 119 Query: 127 FTAVAARADRVMND--GGSILTLTYYGAEKVMPHYNVMGVAKAALEASVRYLAVDLGNRG 184 + + M D GSI+T+ A +KAA + L ++L Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 185 IRVNAISAGPIKT-----LAASGIGDFRYILKWNE---YNAPLKRTVSIEEVGNSALYLL 236 IR N +S G +T L A G + I E PLK+ ++ ++ L+L+ Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 237 SDLSSGVTGEVHHVDSG 253 S + +T VD G Sbjct: 240 SGQAGHITMHNLCVDGG 256
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.003 Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 125 DYRGGGRSSARETAARVAAGAIARKVVPGLVVRGALVQIGKHRIDRSNW 173 DY+ + + G +AR + PG ++V G I +S Sbjct: 564 DYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTL 612
>PF06776#Invasion associated locus B Length = 214 Score = 182 bits (463), Expect = 5e-61 Identities = 94/169 (55%), Positives = 122/169 (72%), Gaps = 1/169 (0%) Query: 8 RLPALAALAIAAFALPAASLAQQSNATPGTVKSNHGAWSIVCDQPAGASAEQCALMQNVI 67 R A LA A + + +++A G V+S HG W I CD P GA AEQCAL+Q+V+ Sbjct: 47 RNGARLMLAGAMAIALSFGWSDRADA-QGAVRSVHGDWQIRCDTPPGAKAEQCALIQSVV 105 Query: 68 AEDRPEVGLSVVVLKTADRKAKILRVLAPLGVLLPNGLGLNVDGKDIGRAYFVRCFSDGC 127 AEDR GL+V++LKTAD+K+K++RV+APLGVLLP+GLGL +D D+GRA FVRC +GC Sbjct: 106 AEDRSNAGLTVIILKTADQKSKLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGC 165 Query: 128 YAEVVLEDELLKTFRAGATATFIVFQSPEEGIGIPVDLKGFDEGYDALP 176 AEVV++D+LL R TATFI+F++PEEGIG P+ L G EGYD LP Sbjct: 166 VAEVVMDDKLLGQLRTAKTATFIIFETPEEGIGFPLSLNGIGEGYDKLP 214
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 2e-22 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 2 RILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61 IL+ +DD + L AL AGY V + A D V+ D+ +P+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARI-RALIRRAA 120 +L + + +PVL+++A++ + + + GA DY+ KPF + E++ I RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHA 123 + Sbjct: 125 RPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.019 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 28/109 (25%) Query: 357 LLENAARYAHDRISLNVEPAPEDAREREPGRQ---WIVLQIDDDGPGLDPDQIAVAMKRG 413 L+EN ++ + P+ + G + + L++++ G Sbjct: 263 LVENGIKHG-------IAQLPQGGKILLKGTKDNGTVTLEVENTGSL------------- 302 Query: 414 KRLDESKPGTGLGLSIVSE-IVGEY--QGSVELSRRDVGGLRATLVLPA 459 L +K TG GL V E + Y + ++LS + G + A +++P Sbjct: 303 -ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQ-GKVNAMVLIPG 349
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 28.4 bits (63), Expect = 0.032 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 209 EAQNALQKALALDPDDPRSAFYLALGLKQEGKHAEALAAF 248 +A Q LD D R L + G++ A+ ++ Sbjct: 54 DAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 93 Score = 28.4 bits (63), Expect = 0.036 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 214 LQKALALDPDDPRSAFYLALGLKQEGKHAEALAAFRKLAESSPADAP-WLSL 264 + + D + LA Q GK+ +A F+ L D+ +L L Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGL 76
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 63.1 bits (153), Expect = 6e-13 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 25/162 (15%) Query: 119 RPRAQGSGFFITEDGYLVTNNHVVSDGS-------AFTVIMN-----DGTELDAKLVGKD 166 SG + L+TN HVV AF +N +G ++ Sbjct: 99 TGTFIASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 157 Query: 167 SRTDLAVLKVDDKRK-------FTYVSFADDEKVRVGDWVVAVGNPFGLGGTVTAGIISA 219 DLA++K + + +++ + +V + G P A + + Sbjct: 158 GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP---VATMWES 214 Query: 220 RGRDIGSGPYDDYLQVDAAVNRGNSGGPTFNLSGEVVGINTA 261 +G+ +Q D + GNSG P FN EV+GI+ Sbjct: 215 KGKITYLKGEA--MQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.7 bits (220), Expect = 2e-22 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 3 TRMKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRD 62 T IL+ +DD L +A AG S+ + + D++V D ++P + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLSLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVE-VLGR 121 L+ +++ PVL++SA + G DYLPKP+ +EL+ + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 RKGAPEQ 128 K P + Sbjct: 122 PKRRPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 4e-05 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 20/104 (19%) Query: 362 LIDNAIKYA--EGAENPLIRVEMMRSDRHVVLTVADHGPGIPENMRGEVVKRFVRLDESR 419 L++N IK+ + + I ++ + + V L V + G +N Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 420 SKPGTGLGLSLVDAVMEMHRG-SLELSATEEDGRGLAVRMVFPA 462 +K TG GL V ++M G ++ +E+ G+ ++ P Sbjct: 307 TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIPG 349
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 3e-04 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 26/105 (24%) Query: 672 LLSNAVKF----TNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQY 727 L+ N +K +GG+I L+ K G VTL + ++G K Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 728 AKSKGGSGLGLA-ISRSLTRLHGG--TMKIHSAENVGTIISVRIP 769 +K +G GL + L L+G +K+ + + V IP Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.017 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 8/137 (5%) Query: 230 LSTGEGATLLASLLAGSAISQVPI----GRASDRMDRRIVMVACGIAGVVSCLAMSVSIA 285 + + + LLA A+ Q G SDR RR V++ V M+ + Sbjct: 36 VHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF 95 Query: 286 SSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVG 345 VLY + + + A+ A+ D+ DE + +G G ++GP ++G Sbjct: 96 LW--VLY-IGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGP-VLG 151 Query: 346 PVMDRFGPVALFIALAV 362 +M F P A F A A Sbjct: 152 GLMGGFSPHAPFFAAAA 168
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.012 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 30 EEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAI-- 87 +E E +A K +++ VP+ + + P+Q + PA P V I Sbjct: 1101 KETATVEKEEKA-KVETEKTQEVPKVTSQVS-PKQEQSETVQPQAEPARE-NDPTVNIKE 1157 Query: 88 PDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNS 124 P Q A A + + + N NS Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 54.0 bits (130), Expect = 4e-10 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 40/232 (17%) Query: 2 ASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEA-GQ 60 ++ L +D GT N+++ + IV+ P+ ++ +D SP V A G Sbjct: 10 SNDLSIDLGTANTLIYVKG----QGIVLNEPS--------VVAIRQDRAGSPKSVAAVGH 57 Query: 61 AAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWE 120 A + PG ++ +K G + + E ++Q F+ ++ N++ Sbjct: 58 DAKQMLGRTPGNIAAIRPMK--------DGVI--ADFFVTEKMLQHFIKQVH---SNSFM 104 Query: 121 ATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRD 180 RV++ P GA E+ A+ + G EV + EP+AAA + Sbjct: 105 RPSPRVLVCVP---VGATQVERRAIRE---SAQGAGAREVFLIEEPMAAAIGAGLPVSEA 158 Query: 181 ATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNI 232 +V D GGGTT+ ++I S G + + S V I GD FD II+ + Sbjct: 159 TGSMVVDIGGGTTEVAVI---SLNGVVYS-----SSVRIGGDRFDEAIINYV 202
>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein signature. Length = 104 Score = 26.4 bits (58), Expect = 0.013 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 6/34 (17%) Query: 4 RREFVRLALEE----GVNRRELCRRFGISPDIGY 33 + V LA+++ G +R+E+C ++ ++ GY Sbjct: 43 HSDRVILAMKDYLVGGHSRKEVCEKYQMNN--GY 74
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 30.5 bits (68), Expect = 0.013 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 44/181 (24%) Query: 112 LRTLVNRAFVSRQIEEL-RPEIEALSHAVIDGFEKDGETELLKTYAETIPVTIIARMLGI 170 LR L+ R + +EE+ R ++E+L V E+ + + LK I + AR+ G Sbjct: 129 LRELLRR----KDLEEIVRKKLESLLKHV----EEQTDPKTLKA---GINCALKARLFGK 177 Query: 171 PVEAAPRLL-------------------DW------SHRMVKMYVFNPSLETEFDANNAS 205 + P LL DW R+V + SL T+ DAN+AS Sbjct: 178 TLSLKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDANDAS 237 Query: 206 A---EFADYLKGIIAEKRTNPADDLLTHMITSE---KDGERLSDAELISTTVLLLNAGHE 259 EF L+ + K AD L + S K ++ + + LL HE Sbjct: 238 CSRLEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFN-AEESSWLLLMLSLLQQPHE 296 Query: 260 A 260 Sbjct: 297 V 297
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 6e-15 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 4/118 (3%) Query: 5 VMIVEDNELNMKLFRDLIEASGYATIQTRNGMEALELARKHRPDLILMDIQLPEVSGLEV 64 +++ +D+ + + +GY T N DL++ D+ +P+ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 TKWLKEDDELHVIPVIAVTAFAMKGDE-ERIRQGGCEAYVSKPISVPKFIETIKTYLG 121 +K+ +PV+ ++A + +G + Y+ KP + + I I L Sbjct: 66 LPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYD-YLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 6e-20 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 3 ARILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPVDLVLLDIMMPGMDGF 62 A ILV DD A +L L +DV + DLV+ D++MP + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRV-KSLVR 121 ++ R+K +PV++++A + ++ + GA D+L KP + +L+ + ++L Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 LKNVSDELRLRAQTAQTI 139 K +L +Q + Sbjct: 122 PKRRPSKLEDDSQDGMPL 139 Score = 58.7 bits (142), Expect = 2e-11 Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 8/140 (5%) Query: 154 GSVLLVDGRASSQERLTRALKPIA-DVAVISDPQAALFEAAESSFDLIIVNANFDDYDPL 212 ++L+ D A+ + L +AL DV + S+ A DL++ + D + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 213 RLCSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVA---RSLTQ 269 L +++ + +P+L+++ Q ++A E G DY+ +P D EL+ R+L + Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 270 IRRKHCNDRLRASVQQTIEL 289 +R+ +L Q + L Sbjct: 122 PKRRP--SKLEDDSQDGMPL 139
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 23.9 bits (51), Expect = 0.041 Identities = 11/39 (28%), Positives = 17/39 (43%) Query: 11 LLSTADTGYFYVTTKNSRTMTDKMTKTKYDPVAKKHVEF 49 L + + T K + +T T KY +A K V+F Sbjct: 223 LYDWRSSNSYPWTQKLNLHLTITATGQKYRILASKIVDF 261
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 65.6 bits (160), Expect = 8e-14 Identities = 80/387 (20%), Positives = 139/387 (35%), Gaps = 24/387 (6%) Query: 19 SLIAALASITAVGIAIGLGLPLLSVIME---KRGIAPTLNGLNAAMAGLASMAAAPFTMK 75 LI L+++ + IGL +P+L ++ G+ A+ L A AP Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 FAHRHGVAPTMLLAIMFAAASSLGFYYLTNFWLWFPLRIVFHGAITVLFILSEFWINATA 135 + R G P +L+++ AA W+ + RIV G ++ +I Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV-AGITGATGAVAGAYIADIT 124 Query: 136 PPNRRGFVLGIYGTVLSLGFASGPLLFSILGSEG-FLPFAVGAGVILLSAIPIFL----- 189 + R G G +GP+L ++G PF A + L+ + Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 190 ---ARNESPVLDEKPKRHFMRYVFLVPTAT--AAVFIFGAVEYGGLSLFPIFGT-RAGFS 243 R P F + A A FI V +L+ IFG R + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 244 ESQAALLLTVMGVGNFIFQIPL-GMLSDRVKDRRTILSALTLIGLVGALFLPTLVENW-F 301 + + L G+ + + Q + G ++ R+ +RR ++ + G G + L W Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADG-TGYILLAFATRGWMA 303 Query: 302 LMALVLLFWGGCVSGLYTVGLSHLGSRLQGADLAAANAAFVFSYAVGTVAGPQVIGAAMD 361 +VLL GG LS + L + AA ++ ++ GP + A Sbjct: 304 FPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALT---SLTSIVGPLLFTAIYA 360 Query: 362 VTGN--DGFAWAIAGFFGLYVVLSLVR 386 + +G+AW L + +L R Sbjct: 361 ASITTWNGWAWIAGAALYLLCLPALRR 387
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 28.3 bits (63), Expect = 0.032 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 11 GTPKRTSHAQV-VDQLGKAIVSGEFPVGSILPGDPELALRFRVSRTVLREAMKTLAAKGM 69 GT K +V V++L K G F GS+ P A+RF A+ K + Sbjct: 245 GTEKEQWLREVKVEELRKYYEEGHFKAGSMGP-KVLAAIRFIEWGG--ERAIIAHLEKAV 301 Query: 70 IVPRARIGTRVTP 82 + GT+V P Sbjct: 302 EALEGKTGTQVLP 314
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 34.1 bits (78), Expect = 8e-04 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 22 MKKLLVALATTVAVLGIAPAASAQEKAKICFIYVGSKTDGGWTQAHDIGRQE 73 MKK +A+A V A AQ K Y G+K GW+Q HD G Sbjct: 1 MKKTAIAIA----VALAGFATVAQAAPKDNTWYTGAKL--GWSQYHDTGFIN 46
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.5 bits (66), Expect = 0.017 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Query: 122 AIPLLSKIPVVGPLLFRQDAIFYASVAIVVGVHLFLFRSRAGLKLRAVGDSHASAHALG 180 +PLL IP +G LFR+ + V LF+ ++ R + + A ALG Sbjct: 474 KVPLLGDIPYIGA-LFRRKSELTRRT-----VRLFI------IEPRIIDEGIAHHLALG 520
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.1 bits (68), Expect = 0.025 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 11/111 (9%) Query: 232 TPASLARMMVGSDVAVVTPEGTSTRGDVQLEARHLTVAART---PFAVSLKDICLKVRAG 288 TP+ A++ T G T H + +R+ P V K++ K++ G Sbjct: 165 TPSDTAQLNKQFVKGFATDIGGRT--------SHSAIMSRSLEIPAVVGTKEVTEKIQHG 216 Query: 289 EVLAIAGVAGNGQSELFDALSGEYPLADDDAIQIRQRPVGTRNINARRLMG 339 +++ + G+ G + Y + +Q + G Sbjct: 217 DMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKDG 267
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.037 Identities = 14/39 (35%), Positives = 17/39 (43%) Query: 35 VQVLLGENGAGKSTLMKILAGEHAPTGGEIVVGGRKVSA 73 VL G G GKSTL+ L G + +G K S Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSY 636
>SECA#SecA protein signature. Length = 901 Score = 1191 bits (3082), Expect = 0.0 Identities = 488/914 (53%), Positives = 637/914 (69%), Gaps = 35/914 (3%) Query: 4 LGGFARKLFGSANDRRVRGYKGRVDAINALEAEMKALSDEALAAKTAEFRRELADGKTLD 63 L K+FGS NDR +R + V+ INA+E EM+ LSDE L KTAEFR L G+ L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 64 DILVPAFAVVREAALRVLGLRPFDVQLIGGMILHERAIAEMKTGEGKTLVATLPVYLNAL 123 +++ AFAVVREA+ RV G+R FDVQL+GGM+L+ER IAEM+TGEGKTL ATLP YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 124 AGKGVHVVTVNDYLAQRDAGMMGRIYGFLGMTTGVIVHGLSDEQRRDAYACDVTYATNNE 183 GKGVHVVTVNDYLAQRDA ++ FLG+T G+ + G+ +R+AYA D+TY TNNE Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 184 LGFDYLRDNMKYERGQMVQRGHFFAIVDEVDSILVDEARTPLIISGPLDDRSDLYNTINE 243 GFDYLRDNM + + VQR +A+VDEVDSIL+DEARTPLIISGP +D S++Y +N+ Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNK 241 Query: 244 FIPLLSPE------------DYEIDEKQRSANFSEEGTEKLENMLREAGLL-KGESLYDI 290 IP L + + +DEK R N +E G +E +L + G++ +GESLY Sbjct: 242 IIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 301 Query: 291 ENVAIVHHVNNALKAHKLFTRDKDYIVRNGEIVIIDEFTGRMMPGRRYSEGQHQALEAKE 350 N+ ++HHV AL+AH LFTRD DYIV++GE++I+DE TGR M GRR+S+G HQA+EAKE Sbjct: 302 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 361 Query: 351 KVQIQPENQTLASITFQNYFRMYDKLAGMTGTAATEAEEFGNIYGLEVLEVPTNLPIKRI 410 VQIQ ENQTLASITFQNYFR+Y+KLAGMTGTA TEA EF +IY L+ + VPTN P+ R Sbjct: 362 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 421 Query: 411 DEDDEVYRTVGEKFKAIIDEIKSAHERGQPMLVGTTSIEKSELLADMLKKSGFSKFQVLN 470 D D VY T EK +AII++IK +GQP+LVGT SIEKSEL+++ L K+G K VLN Sbjct: 422 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGI-KHNVLN 480 Query: 471 ARYHEQEAYIVAQAGVPGAVTIATNMAGRGTDIQLGGNPDMRIQQELADVEPGPEREARE 530 A++H EA IVAQAG P AVTIATNMAGRGTDI LGG+ Q E+A +E + Sbjct: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSW----QAEVAALENPTAEQI-- 534 Query: 531 KAIREEVQKLKEKALAAGGLYVLATERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDL 590 + I+ + Q + L AGGL+++ TERHESRRIDNQLRGRSGRQGD G S+FYLS++D L Sbjct: 535 EKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 594 Query: 591 MRIFGSDRMDGMLQKLGLKEGEAIVHPWINKALERAQKKVEARNFDIRKNLLKYDDVLND 650 MRIF SDR+ GM++KLG+K GEAI HPW+ KA+ AQ+KVE+RNFDIRK LL+YDDV ND Sbjct: 595 MRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVAND 654 Query: 651 QRKVIFEQRIELMDAESVTDTVTDMRNEVIEEIVAKRIPERAYAEKWDAEGLKADVQQYF 710 QR+ I+ QR EL+D V++T+ +R +V + + IP ++ E WD GL+ ++ F Sbjct: 655 QRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDF 714 Query: 711 NLDLPIAEWVAEE-GIAEDDIRERITAAVDKAAAERAERFGPEIMQYVERSVVLQTLDHL 769 +LDLPIAEW+ +E + E+ +RERI A + + E G E+M++ E+ V+LQTLD L Sbjct: 715 DLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSL 774 Query: 770 WREHIVNLDHLRSVIGFRGYAQRDPLQEYKSEAFELFQALLGNLRQAVTAQLMRVEL--- 826 W+EH+ +D+LR I RGYAQ+DP QEYK E+F +F A+L +L+ V + L +V++ Sbjct: 775 WKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMP 834 Query: 827 -VREAPEEPQPLPPMQAHHIDPLTGEDDFAQAGETLLAVAPANRDPADPSTWGKVARNEA 885 E E+ + + + + L+ +DD + A L A KV RN+ Sbjct: 835 EEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTG----------ERKVGRNDP 884 Query: 886 CPCGSGKKYKHCHG 899 CPCGSGKKYK CHG Sbjct: 885 CPCGSGKKYKQCHG 898
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 61.4 bits (149), Expect = 2e-12 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%) Query: 37 VPAMPGILGTSPAVVQLTLSLYMVMLGLGQIVFGPVSDRIGRRPVLIGGAMLFAAASFCL 96 +P + PA + +M+ +G V+G +SD++G + +L+ G ++ S Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 AASSSAIPFVAF-RFLQAVGASAALVATFATIRDVYADRPESVVIYSLFSSILAFVPALG 155 S + RF+Q GA AA A + Y + + L SI+A +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGA-AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 156 PITGAMLAERFGWRSIFV 173 P G M+A W + + Sbjct: 156 PAIGGMIAHYIHWSYLLL 173
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 27.0 bits (59), Expect = 0.012 Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 2/49 (4%) Query: 45 AYRAAEDTLLDQTLVRVDEHSYRHYLDI-LDQPPSGDGFERLMNAPKPW 92 Y + + TL + H + HYL P E W Sbjct: 484 TYERTPEESI-YTLEELFRHEFTHYLQGRYVVPGMWGQGEFYQEGVLTW 531
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.5 bits (66), Expect = 0.003 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 83 AVLGRLAIDRDWQGKGLGAALLQDAV--LRSSQAADIMGIRGLLVHAISGEAKAFYEHYG 140 A++ +A+ +D++ KG+G ALL A+ + + +M L I+ A FY + Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLM----LETQDINISACHFYAKHH 145 Query: 141 F 141 F Sbjct: 146 F 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.002 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 1 MDIAQEETNTKGRYTATLDGH-TGEMTYSRSSPHLIIVDHTFVPDALRGKGVGQALALHA 59 MD++ E K + L+ + G + + +++ V R KGVG AL A Sbjct: 55 MDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKA 114 Query: 60 IEEAR 64 IE A+ Sbjct: 115 IEWAK 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 2 RVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGYE 61 +L+ +DD+A + L ++V T D D+++ D+ +PD + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARI-HAIVRRSK 120 +L ++ ++ P+L++S ++ GA DY+ KPF EL+ I A+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHAQ 124 ++ Sbjct: 125 RPSK 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.3 bits (128), Expect = 2e-11 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%) Query: 1 MDVRRLMIADGSDVVRKVGKRILSGMGFLVSEAPSSLEALVRCEAELPNILIVDAGLDG- 59 M +++AD +R V + LS G+ V ++ A ++++ D + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 -ALDLIGNIRRLPEGASVRIYYCVVQADLKKMMAGKRAGADDFLLKPFD 107 A DL+ I++ V + Q + GA D+L KPFD Sbjct: 61 NAFDLLPRIKKARPDLPVLV--MSAQNTFMTAIKASEKGAYDYLPKPFD 107
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.031 Identities = 23/181 (12%), Positives = 54/181 (29%), Gaps = 10/181 (5%) Query: 47 QEVRAQRDAARATYAVENAKTLQALRRERDKAVALMVQHERTLRDTRHLVSENTEL---Q 103 Q + + + + E + + E+ + L + Sbjct: 154 QILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR 213 Query: 104 AQLADMNVEAATMRSAIRQLEQRLESMEAAAKSSARENGANSET-VRSLQSRIDKQSADL 162 A+ + + R + RL+ + A ++ V +++ + +L Sbjct: 214 AERLTVLARINRYENLSRVEKSRLDDFSSLLH-----KQAIAKHAVLEQENKYVEAVNEL 268 Query: 163 DGLKIDLAARDTEIEHLKSRMRAMHDE-RETLRANLKAETARAGEMELRLTGDEARMHQL 221 K L ++EI K + + + + L+ T G + L L +E R Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQAS 328 Query: 222 E 222 Sbjct: 329 V 329
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 37.6 bits (87), Expect = 4e-05 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 27/118 (22%) Query: 1 MKKIFRGVAAALLSGTPVYAADVYQPPVEAPFVEQPVEVVEASGWYLRGDVGYAWNDLRG 60 MKK +A AL V A AP + + WY +G++ Sbjct: 1 MKKTAIAIAVALAGFATVAQA--------AP---------KDNTWYTGAKLGWSQYH--- 40 Query: 61 AHYFQGSNSNLVDFDRADVDDSYVLGGGVGYQINSYLRADVTLDYLGESDFNGSTSGG 118 ++ ++ + ++ G GYQ+N Y+ ++ D+LG + GS G Sbjct: 41 -------DTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENG 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.005 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 18/82 (21%) Query: 194 VLLVGPPGTGKTLLARSV---AGEANVPFFT-----ISGSDFVEMFVGV------GASRV 239 +++ G GTGK L+AR++ N PF I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 240 RD-MFEQAKKNAPCIIFIDEID 260 FEQA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.1 bits (70), Expect = 0.004 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 220 DPGDLYQAGYSHVLSGDYSIAEQEFR--DYLDAFPSGDKAADASFWMGEAQYSQ--GKYS 275 LY ++ SG Y A + F+ LD + D+ F++G Q G+Y Sbjct: 35 TLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHY-------DSRFFLGLGACRQAMGQYD 87 Query: 276 DAAKTFLNAHQSHGKSPKAP----EMLLKLGMSLGA 307 A ++ K P+ P E LL+ G A Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEA 123
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 122 bits (308), Expect = 3e-36 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%) Query: 59 QDFTVNVGDRIFFDTDSTSIRADAQATLDRQAQWLAKY--PNYGITIEGHADERGTREYN 116 Q + + F+ + +++ + QA LD+ L+ + + + G+ D G+ YN Sbjct: 211 QTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYN 270 Query: 117 LALGARRAAATRDYLVSRGVPGNRMRTISYGKEKPVA--VCDD-------ISCWSQNRR 166 L RRA + DYL+S+G+P +++ G+ PV CD+ I C + +RR Sbjct: 271 QGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRR 329
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 49.7 bits (118), Expect = 1e-08 Identities = 45/216 (20%), Positives = 71/216 (32%), Gaps = 20/216 (9%) Query: 38 PVDIVPVESITQIQQGDKKAPAKEKA------SPVPTKKP-TPVENAENVGEN------D 84 VD + + IQ P+ + +PVP P TP E E V EN Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 85 VDLKTPPTPNVKPVENESAAAPQKTEKAPPTPDPVKEEIEKVEETKPAA--EPAT----- 137 V+ E A + KA + V + + +ET+ E AT Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 138 EVAALPEPKQEVKPDTKPEPAPAEEQPAENPEAEALPDRVPTPQVKPKVEKPAQTAKTPE 197 + E QEV T E+ P+AE + PT +K + TA T + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 198 RKKEEVKKEQKKASSQKESDFNADEIAALLNKQESS 233 KE ++ + + + N ++ Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Score = 49.3 bits (117), Expect = 2e-08 Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 24/251 (9%) Query: 30 EVADVEALPV-DIVPVESITQIQQGDKKAPAKEKASPVPTKKPTPV-------------E 75 E+A V+ PV P + + + + K + T Sbjct: 1016 EIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSN 1075 Query: 76 NAENVGENDVDLKTPPTPNVKPVENESAAAPQKTEKAPPTPDPVKEEIEKVEETKPAAEP 135 N N+V T + E + A +K EKA + +E + + P E Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Query: 136 ATEVAALPEPKQEVKPDTKPEPAPAEEQPAENPEAEALPDRVPTPQVKPKVEKPAQTAKT 195 + V EP +E P + ++ P + + V+ V + Sbjct: 1136 SETVQPQAEPARENDPTVNIKEPQSQTN---TTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 196 P-------ERKKEEVKKEQKKASSQKESDFNADEIAALLNKQESSGGGAKRSTEEAALGG 248 + SS K + + + ++ + E + + + A Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Query: 249 KKTTSGNTLSQ 259 T + LS Sbjct: 1253 TSTNTNAVLSD 1263 Score = 44.3 bits (104), Expect = 6e-07 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 11/137 (8%) Query: 117 DPVKEEIEKVEETKPAAEPATEVAALPEPKQE----VKPDTKPEPAPAEEQPAENPEAEA 172 +P E+ + +T P A +P + D P P PA P+E E A Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 173 LPDRVPTPQVKPKVEKPAQTAKTPERKKEEVKKEQKKASSQKESDFNADEIAALLNKQES 232 + Q VEK Q A + EV KE A S +++ +E+A ++ + Sbjct: 1042 E----NSKQESKTVEKNEQDATETTAQNREVAKE---AKSNVKANTQTNEVAQSGSETKE 1094 Query: 233 SGGGAKRSTEEAALGGK 249 + + T K Sbjct: 1095 TQTTETKETATVEKEEK 1111 Score = 42.4 bits (99), Expect = 3e-06 Identities = 51/241 (21%), Positives = 78/241 (32%), Gaps = 18/241 (7%) Query: 44 VESITQIQQGDKKAPAKEKASPVPTKKPTPVENAENVGENDVDLKTPP--TPNVKPVENE 101 V++ TQ + + ++ TK+ VE E + P T V P + + Sbjct: 1076 VKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Query: 102 SAAA-PQKTEKAPPTPDPVKEEIEKVEETKPAAE-PATEVAALPEPKQEVKPDTKPEPAP 159 S PQ P +E + T E PA E ++ E P T+ Sbjct: 1136 SETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ-----PVTESTTVN 1190 Query: 160 AEEQPAENPEAEALPDRVPTPQVKPKVEKPAQTAKTPERKKEEVKKEQKKASSQKESDFN 219 ENPE PT KP + R + +S+ + + Sbjct: 1191 TGNSVVENPENTTPATTQPT-VNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Query: 220 ADEIAALLNKQESSGGGAKRSTEEAALGGKKTTSGNTLSQSEMDALRGQIQNN-WSIIPG 278 D + N S A+ + AL K S +SQ EM+ + Q N W Sbjct: 1250 CDLTSTNTNAVLSD---ARAKAQFVALNVGKAVS-QHISQLEMN---NEGQYNVWVSNTS 1302 Query: 279 M 279 M Sbjct: 1303 M 1303