>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 26.4 bits (58), Expect = 0.045 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Query: 5 ATIARPYAEALFRVAEGGDIAAWSTLVQELAQVARLPEVLSVASSPKVTRAQVAELLLAA 64 AT + A+A+F+ GGD+ S +Q++ + +P L+V TR + ELL Sbjct: 28 ATTTKSAADAVFQQLGGGDV---SGAMQDIDLIMDIPVKLTVELGR--TRMTIKELLRLT 82 Query: 65 LKSPLAAGAEAKNFVQMLVDNHRIA 89 S +A A + +L++ + IA Sbjct: 83 QGSVVALDGLAGEPLDILINGYLIA 107
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.006 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 13/52 (25%) Query: 11 ISHVAKSYRRGSQVVPVLTDITLDIGEGDFVALMGPSGSGKSTLLNLVAGID 62 + HVA+ G + + L G G GKSTL+N + G+D Sbjct: 582 MGHVARVMEPGCKFDYSVV-------------LEGTGGIGKSTLINTLVGLD 620
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 5e-09 Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 46/198 (23%) Query: 102 KDEIIARLESRDVEASLAQALAQVKVARANLGVQQAELKDAEIALRRTAALAPRGAVPAA 161 + IA+ + E +A+ +++V ++ L ++E+ A+ + Sbjct: 245 HKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ---------- 294 Query: 162 QLDTDTA-RVNKARASVNSGEAAVASAEANARAAQVAVDQTVIRAPFDGIV--LAKHANV 218 + ++ + ++ +A E +A +VIRAP V L H Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQA-------SVIRAPVSVKVQQLKVH--- 344 Query: 219 GDNITPFSSASDSKGAVVTIA--------DMDTLEVEADVAESNIAKIRAGQPCEIQLDA 270 ++G VVT A + DTLEV A V +I I GQ I+++A Sbjct: 345 ------------TEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEA 392 Query: 271 LPDMRF---AGRVSRIVP 285 P R+ G+V I Sbjct: 393 FPYTRYGYLVGKVKNINL 410 Score = 44.8 bits (106), Expect = 4e-07 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 19/178 (10%) Query: 19 PRRRRWVRYAAVAALAVVALLAGLTVTRRPTVDTTAVTSAYPYQNDTQLNATGYVVPQ-R 77 RR R V Y + L + +L+ L V+ A A G + R Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLG-----QVEIVAT-------------ANGKLTHSGR 95 Query: 78 KAAVASKGQGRVEWLGVLEGTRVKKDEIIARLESRDVEASLAQALAQVKVARANLGVQQA 137 + V+ + V EG V+K +++ +L + EA + + + AR Q Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 138 ELKDAEIALRRTAALAPRGAVPAAQLDTDTARVNKARASVNSGEAAVASAEANARAAQ 195 + E+ L + + + ++ + E N + Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR 213
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 82.6 bits (204), Expect = 3e-19 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 13 VNVGTIGHVDHGKTTLTAAI--ATVLSAKFGGEAKKYDEIDAAPEEKARGITINTAHIEY 70 +N+G + HVD GKTTLT ++ + + G K D E+ RGITI T + Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130 + N +D PGH D++ + + +DGAIL+ SA DG QTR R++G+P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122 Query: 131 IIVFLNKCDMVDDAELLELVEMEVRELLS 159 I F+NK D L V +++E LS Sbjct: 123 TIFFINKIDQN--GIDLSTVYQDIKEKLS 149
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 74.5 bits (183), Expect = 1e-20 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 2 ANPSVETVNTSGDKLMLALGVLLVLAGFVGFFWLGNQQWYVRGAALAVGIIAGVAVGLMS 61 AN + + + + V L+L VG + + +R A+ + I A V L++ Sbjct: 3 ANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLT 62 Query: 62 APGKSLIAFAKDSYKEVRKVVWPTRKEATQTTLVVFGFVLVMAIFLWLSDKSIEWVIFSV 121 GK+ +AFA+++ EVRKV+WPTR+E TTL+V VM++ LW ++ ++ + Sbjct: 63 TKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILW----GLDGILVRL 118 Query: 122 I 122 + Sbjct: 119 V 119
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 625 bits (1614), Expect = 0.0 Identities = 171/681 (25%), Positives = 296/681 (43%), Gaps = 72/681 (10%) Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TAFWKGMGGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWR 128 + W+ ++NIIDTPGH+DF EV RS+ VLDGA ++ A GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QANKYKVPRLAFVNKMDRTGANFFKVYDQLRLRLKANPVPVVVPIGAEENFKGVVDLLKM 188 K +P + F+NK+D+ G + VY ++ +L A V K Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI------------------KQ 156 Query: 189 KAIIWDEASQGTKFDYVDIPAELVDTCQEWREKMVEAAAEANEDLMNKYLEEGDLPEADI 248 K Y ++ ++W + E N+DL+ KY+ L ++ Sbjct: 157 KV-----------ELYPNMCVTNFTESEQW-----DTVIEGNDDLLEKYMSGKSLEALEL 200 Query: 249 IKALRDRTIACEIQPMLCGTAFKNKGVQRMLDAVIDFLPSPVDIPPVKGELDNGETAERK 308 + R C + P+ G+A N G+ +++ + + S Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243 Query: 309 ASDDEKFSSLAFKIMTDPFVGQLIFFRVYSGVVNSGDTVLNSTKGKKERLGRILQMHANN 368 + FKI +L + R+YSGV++ D+V S K K ++ + Sbjct: 244 -RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGE 301 Query: 369 REEIKEVRAGDIAAAVG--LK-EATTGDTLCDPANPIVLERMVFPEPVISQAVEPKTKAD 425 +I + +G+I LK + GDT P ER+ P P++ VEP Sbjct: 302 LCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQQ 357 Query: 426 QEKMGLALNRLAQEDPSFRVQTDEESGQTIISGMGELHLEILVDRMKREFGVEATVGKPQ 485 +E + AL ++ DP R D + + I+S +G++ +E+ ++ ++ VE + +P Sbjct: 358 REMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPT 417 Query: 486 VAYRETIRSTAKDVEGKFVKQSGGRGQYGHAVITLEPNEQGKGYEFFDEIKGGVIPREYI 545 V Y E K E + + +++ P G G ++ + G + + + Sbjct: 418 VIYMERP---LKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQ 474 Query: 546 PAVDKGIQDTLKSGVLAGFPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMRKANP 605 AV +GI+ + G L G+ V D K+ +G Y+ S FRM + ++ ++KA Sbjct: 475 NAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGT 533 Query: 606 VVLEPMMAVEVETPEEYMGNVMGDLSGRRGIVQGMEDMVGGGKIVRAEVPLSEMFGYSTS 665 +LEP ++ ++ P+EY+ D + + + I+ E+P + Y + Sbjct: 534 ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSD 592 Query: 666 LRSLTQGRATYTMEFKHYAEA 686 L T GR+ E K Y Sbjct: 593 LTFFTNGRSVCLTELKGYHVT 613
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 83.0 bits (205), Expect = 3e-19 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 13 VNVGTIGHVDHGKTTLTAAI--ATVLSSKFGGEAKKYDEIDAAPEEKARGITINTAHIEY 70 +N+G + HVD GKTTLT ++ + ++ G K D E+ RGITI T + Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPY 130 + N +D PGH D++ + + +DGAIL+ SA DG QTR R++G+P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122 Query: 131 IIVFLNKCDMVDDAELLELVEMEVRELLS 159 I F+NK D L V +++E LS Sbjct: 123 TIFFINKIDQN--GIDLSTVYQDIKEKLS 149
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 446 bits (1150), Expect = e-157 Identities = 193/432 (44%), Positives = 273/432 (63%), Gaps = 20/432 (4%) Query: 19 DLRRRAMFLLLALIVYRIGAHIPVPGIDPDQLAKLFQSQAG--GILGMFNMFSGGALSRF 76 DLR++ +F L ++VYR+G HIP+PG+D + + + +G G+ G+ NMFSGGAL + Sbjct: 13 DLRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGGALLQI 72 Query: 77 TIFALGIMPYISASIIMQLLAIVSPQLEALKKEGQAGQRKITQYTRYFTVVLATFQAFGI 136 TIFALGIMPYI+ASII+QLL +V P+LEALKKEGQAG KITQYTRY TV LA Q G+ Sbjct: 73 TIFALGIMPYITASIILQLLTVVIPRLEALKKEGQAGTAKITQYTRYLTVALAILQGTGL 132 Query: 137 AAALENQP---------GLVIDPGMLFRLTTVVTLVTGTMFLMWLGEQITERGLGNGISI 187 A + P +V D + +T V+ + GT +MWLGE IT+RG+GNG+SI Sbjct: 133 VATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGIGNGMSI 192 Query: 188 IIFGGIAAGFPNAVSGLFELVRTGSMSIISAIIIVVLIAAVTYLVVFIERGQRKILVNYA 247 ++F IAA FP+A+ + + I +I V + + LVVF+E+ QR+I V YA Sbjct: 193 LMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGL-IMVALVVFVEQAQRRIPVQYA 251 Query: 248 KRQVGNKIYGGQSSHLPLKLNMSGVIPPIFASSIILFPATILGWFSTGQPSGSWISNTLH 307 KR +G + YGG S+++PLK+N +GVIP IFASS++ PA + + SW+ L Sbjct: 252 KRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGGNSGWKSWVEQNL- 310 Query: 308 NVAEALKPGQPVYVLLYTLAIVFFCFFYTALVFNSRETADNLKKSGAFVPGIRPGDQTAR 367 K P+Y++ Y L IVFF FFY A+ FN E ADN+KK G F+PGIR G TA Sbjct: 311 -----TKGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRPTAE 365 Query: 368 YIDRILTRLTLAGAIYIVFVCLLPEFLVLRWNVP--FYFGGTSLLIIVVVTMDFMAQVQS 425 Y+ +L R+T G++Y+ + L+P ++ + F FGGTS+LIIV V ++ + Q++S Sbjct: 366 YLSYVLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQIES 425 Query: 426 YVMSQQYESLLK 437 + + YE L+ Sbjct: 426 QLQQRNYEGFLR 437
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 67.0 bits (163), Expect = 2e-14 Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 38/183 (20%) Query: 117 NLGSGVIVSPEGYILTNQHVVDGADQIEVALA------------DGRTATAKVIGSDPET 164 + SGV+V +LTN+HVVD AL +G ++ E Sbjct: 102 FIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 160 Query: 165 DLAVLKIN--------MTNLPTITLGRSDQARVGDVVLAIGNPFGVGQTVTMGIISALGR 216 DLA++K + + T+ + + +V + G P ++ + Sbjct: 161 DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-------KPVATMWE 213 Query: 217 NHLGINTFEN-FIQTDAPINPGNSGGALVDVNGNLLGINTAIYSRSGGSLGIGFAIPVST 275 + I + +Q D GNSG + + ++GI+ G+ + Sbjct: 214 SKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGAV 264 Query: 276 ART 278 Sbjct: 265 FIN 267
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 37.3 bits (86), Expect = 4e-04 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 25/142 (17%) Query: 915 SPEAAQAAATGQLASQLKGMAPAAATA---AAGLASGGGAGAALGGLASSALPAAAAALG 971 + +AAA +L +++ G + A A G AA GL +SA+ A + L Sbjct: 263 ADTRTKAAAGVELTTKVLGNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPLS 322 Query: 972 GAGAVSALQTASSLGSAAKQV-----------------AGMVQAARQG---GLAALAAPA 1011 + A+ + +++ G + A+ LA++++ Sbjct: 323 FLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGI 382 Query: 1012 ANAASGALQGALPG--VAGIAG 1031 + AA+ +L GA V + G Sbjct: 383 SAAATTSLVGAPVSALVGAVTG 404
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 36.6 bits (84), Expect = 3e-04 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 17/135 (12%) Query: 510 ERAARAAAAQAAIRAIDASHDAISAELDE-------SGAARCADISARVMDQYRRRLAA- 561 E+AARA AA A A+ DA++ L + A+R + A Sbjct: 68 EQAARAKAAAEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATELAHANNAAMQAED 127 Query: 562 ----LAEDGPTPRAEAKQA-----ETMELQMRIAAVRAERSMLYRLRTESKISDETLTKL 612 LA+ R EA+ A E + + I +AE +L + L++ Sbjct: 128 ERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEE 187 Query: 613 IREIDLSETALSTRK 627 + +++++ LS + Sbjct: 188 AKAVEIAQKKLSAAQ 202
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.3 bits (89), Expect = 8e-07 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 27 AVDATVAAGAVV-GLVEVMKQFTEIESEVPGRVVELLVEDGEPVDAGQVLMRIE 79 +V V A G + + EI+ V E++V++GE V G VL+++ Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLT 128 Score = 25.9 bits (57), Expect = 0.017 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 46 QFTEIESEVPGRVVELLV-EDGEPVDAGQVLMRI 78 Q + I + V +V +L V +G V + LM I Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.8 bits (178), Expect = 3e-17 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 2/184 (1%) Query: 7 VFITGASSGLGLAMAEEYARQGAVLALVARRTDVLDAFARRFPKLS--VSVYRADVRDAD 64 FITGA+ G+G A+A A QGA +A V + L+ + + ADVRD+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 65 ALAAAAASFIAAHGCPDVVIANAGISQGAVTGQGDLAAFRDVMDINYYGMVATFEPFVGP 124 A+ A G D+++ AG+ + + + +N G+ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 125 MTAARHGTLVGVASVAGVRGLPGSGAYSASKSAAIKYLEALRVELRPAGVAVVTIAPGYI 184 M R G++V V S AY++SK+AA+ + + L +EL + ++PG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 185 RTPM 188 T M Sbjct: 191 ETDM 194
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 29.0 bits (65), Expect = 0.011 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%) Query: 24 GLIVGLAIAVVVALYITRSPSPFVSKVAPPPAD---NGASQAQPFDPNRALQGKTPGQ 78 G +V LA+ V++ + S V+ + PP G Q R QG P Sbjct: 14 GNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLRDAQGDIPAV 71
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.5 bits (84), Expect = 1e-04 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 3/128 (2%) Query: 52 VALVVALVLHALAALWLARNRESFTPTPPADV--PVQVELLKTQPIERAPAPQPPAHTAP 109 VA ++ +H + L S T PAD+ P V+ +E P P+P P Sbjct: 29 VAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-P 87 Query: 110 KPAAPEPAAPKPAPAAAQEQVLTSTQTDAHGAPPAAASAASGVPGASSAQPASAPAGASG 169 K A PKP P + V Q P + A+ A + +S A+ Sbjct: 88 KEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATS 147 Query: 170 AATPGPAS 177 AS Sbjct: 148 KPVTSVAS 155
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 201 bits (514), Expect = 1e-69 Identities = 66/153 (43%), Positives = 100/153 (65%) Query: 4 AVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKPFFSLEERLKIANEVLGHYPN 63 A+YPG+FDP+T GH D++ R +FD + V V + K+P FS++ERL+ + + H PN Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLPN 62 Query: 64 VKVMGFKGLLKDFVRTNNARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQY 123 +V F+GL ++ R A I+RGLR +SDFE E QMA N+ L D+ET+F+T S +Y Sbjct: 63 AQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTEY 122 Query: 124 QFISGTIVREIAQLGGDVSKFVFPSVEKWLTEK 156 F+S ++V+E+A+ GG+V FV V L ++ Sbjct: 123 SFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 31.3 bits (71), Expect = 0.009 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 101 IGIIQEQIRIERNQKQEDARYTALYDHNNKVKAIVRSRCGEEPYVDPKLSEIAHV 155 IGI + N ++ + DH + +K ++ + + V +SEI V Sbjct: 34 IGINDSLLTHNANG-EKIKIKKDMKDHKDAIKLVLDALVNSDYGVIKDMSEIDAV 87
>PF05272#Virulence-associated E family protein Length = 892 Score = 38.9 bits (90), Expect = 1e-05 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 41/152 (26%) Query: 36 LILYGPYGTGKTTVAELLPAAIEAKHSAETPNVRAEACRPSHNGVDLIASISEQIIHFPM 95 ++L G G GK+T+ L + ++T G D I+ + Sbjct: 599 VVLEGTGGIGKSTLINTL---VGLDFFSDTH-------FDIGTGKDSYEQIAGIVA---- 644 Query: 96 SGTHHYIILDEVDNLTPAAMQQLKSAMNR-------PYGSQNHDA----VFIMTTNHVE- 143 L E+ A + +K+ + YG D V TTN + Sbjct: 645 ------YELSEMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQY 698 Query: 144 -KIDQG--------VIGRSRLVSFEPMSMTVW 166 G V GR+ LV + ++ Sbjct: 699 LFDITGNRRFWPVLVPGRANLVWLQKFRGQLF 730
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 32.8 bits (75), Expect = 0.002 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 18/122 (14%) Query: 69 VHVDVLLPDTDAPFFHRLQQALQRSLQMLDRRVVVHRTIVAAADDARAAALIERPAYRRA 128 V D + + F ++Q S RV+V + A +ER A R + Sbjct: 80 VIADFFVTEKMLQHF--IKQVHSNSFMRPSPRVLV--CVPVGATQ------VERRAIRES 129 Query: 129 ALIVTAHDTPRVRDALTAAIARG----EHVVTMVTDIGG----IARVHYAGIDNYRAGRT 180 A A + + + + AAI G E +MV DIGG +A + G+ + R Sbjct: 130 AQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRI 189 Query: 181 AG 182 G Sbjct: 190 GG 191
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.3 bits (76), Expect = 0.003 Identities = 15/42 (35%), Positives = 24/42 (57%) Query: 287 ILIAIALLIGTPFFLFFGSLSDKIGRKPIILAGCLIAALTYF 328 IL+A+ L+ G+LSD+ GR+P++L AA+ Y Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88 Score = 31.7 bits (72), Expect = 0.008 Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 28/265 (10%) Query: 77 ALVFGRLGDLVGRKHTFLVTIVIMGVSTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALG 136 A V G L D GR+ LV++ V ++ P V++I R++ G+ G Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-------FLWVLYIG-RIVAGIT-G 110 Query: 137 GEYGGAATYVAEHAPANRRGFYTAWIQTTATLGLFLSLLVILGVRTFIGEEAFGAWGWRV 196 A Y+A+ + R + ++ G+ V+ G+ G + Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG-PVLGGL--------MGGFSPHA 161 Query: 197 PFVASILLLAVSVWIRMQLNESPVFLRIKSEGKTSKAPLTEAFGQWKNLKIVILALVGLT 256 PF A+ L ++ L + + + PL + + L Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF-----RWARGMTVVAALM 216 Query: 257 AGQAVVWYTGQFYA---LFFLTQTLKVDGASANILIAIALLIGTPF-FLFFGSLSDKIGR 312 A ++ GQ A + F D + I +A ++ + + G ++ ++G Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 313 KPIILAGCLIAALTYFPLFKALTHY 337 + ++ G +IA T + L T Sbjct: 277 RRALMLG-MIADGTGYILLAFATRG 300
>PF06580#Sensor histidine kinase Length = 349 Score = 43.7 bits (103), Expect = 1e-06 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 43/196 (21%) Query: 323 IATSSEQAARLVTQLLALARAENRASGLTFEPVEIASLAR--RAVRDWV---QAALAKQM 377 I +A ++T L L R L + SLA V ++ ++ Sbjct: 186 ILEDPTKAREMLTSLSELMRY-----SLRYSNARQVSLADELTVVDSYLQLASIQFEDRL 240 Query: 378 DLGYEGPPDDAPIDVDGNPVMLREMLGNLIDNAIRY----TPEGGRITVRVHADRTARLA 433 + P + V P ML + L++N I++ P+GG+I ++ D Sbjct: 241 QFENQINPAIMDVQV---PPML---VQTLVENGIKHGIAQLPQGGKILLKGTKDN--GTV 292 Query: 434 HLEVEDTGPGIPAAERGRVVERFYRILGREGDGSGLGLAIVRE-IATQHGGTLTIDDHVY 492 LEVE+TG L + +G GL VRE + +G + Sbjct: 293 TLEVENTGSL---------------ALKNTKESTGTGLQNVRERLQMLYG-----TEAQI 332 Query: 493 QTAPRLAGTLVRVSLP 508 + + + V +P Sbjct: 333 KLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 100 bits (251), Expect = 1e-26 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMSGLD 61 IL+A+DD+ + L ++L ++GY V + ++ DL++ D+ +P + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNE-LEARVRALTRR 118 +L R++ +LPVL+++A ++ +K + GA DY+ KPF L E + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.019 Identities = 13/31 (41%), Positives = 16/31 (51%) Query: 32 VVFVGPSGCGKSTLMRMIAGLEDISSGDLLI 62 VV G G GKSTL+ + GL+ S I Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.9 bits (101), Expect = 1e-06 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 1/153 (0%) Query: 23 LLALATAGFITVLTEALPAGLLPLMSADLRVTEALIGQLVTVYALGSIVAAIPLVAATRG 82 L+ L F +VL E + LP ++ D A + T + L + + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 83 IARRRLLIAALAGFVVSNALTAVS-PYYVLTLAARFVAGMAAGLLWALLAGYASRMVDEH 141 + +RLL+ + + + V ++ L + ARF+ G A AL+ +R + + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 142 LRGRAIAVAMLGVPVAMSIGIPAGTALGAAVGW 174 RG+A + V + +G G + + W Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW 168
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 2e-07 Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 10/211 (4%) Query: 96 VLLAALSIVLDGFDGQLIGFAIPVLIKEWGITRGA---FAPAVAAGLIGMGIGSACAGLV 152 +++ ++ LD LI +P L+++ + + +A + + G + Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 153 ADRFGRRGAVLGSVFLFGAATCAIGLAHNVETIAALRFVAGLGIGGALPTATTMTAEYTP 212 +DRFGRR +L S+ + A + + R VAG+ G A A+ T Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITD 125 Query: 213 ARRRTMMVTATIVCVPLGGMLAGLFAHEVLPRYGWRTLFFAGGALPLVLGFVLAAALPES 272 R C GM+AG ++ + FFA AL L F+ L Sbjct: 126 GDERARHFGFMSACFGF-GMVAGPVLGGLMGGFSPHAPFFAAAALNG-LNFLTGCFLLPE 183 Query: 273 PRYLARRPARWAELGAL----LARMKRPVAP 299 RRP R L L AR VA Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAA 214
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 136 bits (344), Expect = 2e-37 Identities = 92/408 (22%), Positives = 175/408 (42%), Gaps = 15/408 (3%) Query: 17 VMLWLVATGFFMQTLDSTIVNTALPSMAASLGESPLRMQSVVIAYSLTMAVMIPVSGWLA 76 +++WL FF L+ ++N +LP +A + P V A+ LT ++ V G L+ Sbjct: 15 ILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 77 DTFGTRRVFLSAILVFSLGSLLCANAHT-LPQLVAFRIVQGVGGAMLLPVGRLAVLRTFP 135 D G +R+ L I++ GS++ H+ L+ R +QG G A + + V R P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 136 AERYLPALSFVAIPGLIGPLIGPTLGGWLVKIASWHWIFLINVPVGIVGCVATFFSMPDA 195 E A + +G +GP +GG + HW +L+ +P+ + V + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAH--YIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 196 RNAAVGRFDVKGYLLLTIGMVAISLSLDGLADLGMQHAAVLVLLILSLACFVAYGLYAVR 255 G FD+KG +L+++G+V L + L++ +LS FV + + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTT------SYSISFLIVSVLSFLIFVKHIR---K 242 Query: 256 APQPIFSLELFKIHTFSVGLLGNLFARIGSGAMPYLIPLLLQVSLGYSAFEAG-LMMLPV 314 P L K F +G+L ++P +++ S E G +++ P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 315 AAAGMFSKRLITRLIMKYGYRKVLLANTIMVGVMMASFALMRDTMPVWLKVVQLALFGGF 374 + + + L+ + G VL + V + + + +T ++ ++ + + GG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 375 NSMQFTAMNTLTLKDLGTGGASSGNSLFSLVQMLSMSLGVTVAGALLA 422 + + T ++T+ L A +G SL + LS G+ + G LL+ Sbjct: 363 SFTK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 25.9 bits (57), Expect = 0.037 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 26 RLALEEQVAQLRAEAE----AVRAELAQLRDERNALEAERDTLSAKIDDAQVKLNAILEK 81 + EE+V +L + + + + Q + AER T+ A+I+ + + Sbjct: 177 QNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 82 LPRTKS--AEQADNQLDLLDAQAR 103 L S +QA + +L+ + + Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENK 260
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.007 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 10/47 (21%) Query: 24 GARTLLAAFTQVFRPGEIWCVA-------GPNGAGKTTLLATLAGLR 63 G L+ +V PG C G G GK+TL+ TL GL Sbjct: 577 GKYILMGHVARVMEPG---CKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 48.8 bits (116), Expect = 1e-08 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 7/174 (4%) Query: 44 AQRVISLAPHVTELVYAAG----GGAKLVGTVTYSDYPPAAKSVPRVGDNKALDLERIAA 99 R+++L EL+ A G G A + + PP SV VG +LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTE 94 Query: 100 LRPDLIVV-WRHGNAERQTDALRALHIPLFFSDPKHLDDIASSLRRLGTLLGTQPAADTA 158 ++P +V +G + + F + L SL + LL Q AA+T Sbjct: 95 MKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETH 154 Query: 159 AASFERDIAALRARYAAR-APVTVFFQAWDRPLMTLNGTH-LISDVIALCGGRN 210 A +E I +++ R+ R A + D M + G + L +++ G N Sbjct: 155 LAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPN 208
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.8 bits (67), Expect = 0.018 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 92 YRGDLARFDRQEYAGYLRVNAM---LAKQLAALLRPDDLIWVHDYHLLPFAHALRELGVK 148 YR L ++ +E + + ++ + R D I L A+AL E+ Sbjct: 99 YRDYLIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSA 158 Query: 149 NPIGFFLHIPF 159 IGF+L++PF Sbjct: 159 FKIGFYLYLPF 169
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 111 bits (278), Expect = 1e-28 Identities = 76/396 (19%), Positives = 160/396 (40%), Gaps = 12/396 (3%) Query: 25 LAVLDGAIANVALPTIARDLHASDAGSIWIVNAYQLAVTITLLPLASLGERIGYRRVYIA 84 +VL+ + NV+LP IA D + A + W+ A+ L +I L +++G +R+ + Sbjct: 25 FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84 Query: 85 GLALFTAASLGCALAGSLPTLAVM-RVIQGFGAAGIMSVNAALVRMIYPSSMLGRGLSIN 143 G+ + S+ + S +L +M R IQG GAA ++ +V P G+ + Sbjct: 85 GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 144 AMVVALSSAIGPTVASAILSFASWPWLFAVNVPIGIAAVLGSVRALPTNPLHDAPYDIPS 203 +VA+ +GP + I + W +L + + I I V ++ L +DI Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 204 ALMNACVFGLLIMAVDGFGHGEGRLYVAAELIVALVVGYFFVKRQLSQPAPLLPVDLMRI 263 ++ + ++ Y + LIV+++ FVK P + L + Sbjct: 204 IILMSVGIVFFMLFT--------TSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKN 255 Query: 264 PMFALSICTSVASFTSQMLAFVALPFWLQNSLGFSQVETG-LYMTPWPLVIVFAAPLAGV 322 F + + F + +P+ +++ S E G + + P + ++ + G+ Sbjct: 256 IPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGI 315 Query: 323 LSDRYSAGILGGIGLALFAAGLLSLATIGAHPGTVDIVWRMALCGAGFGLFQSPNNRAML 382 L DR + IG+ + L+ + + + + + G ++ + + Sbjct: 316 LVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFVLGGLSFTKTVISTIVS 374 Query: 383 SSAPRARSGGAGGMLSTARLTGQTLGAALVALIFGL 418 SS + +G +L+ + G A+V + + Sbjct: 375 SSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>cloacin#Cloacin signature. Length = 551 Score = 28.1 bits (62), Expect = 0.007 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 4/77 (5%) Query: 36 GYAYGPAYAPSPVYGTVNIWGGGGGGRDWDRGHRDYRRWDRDRGDHGWG-GWGRGGRRGD 94 G+ G + G G GGG D + W G G G WG G G+ Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWG---GGSGSGIHWGGGSGHGN 64 Query: 95 WNDGGGGGGHGRGDGGG 111 G GG G Sbjct: 65 GGGNGNSGGGSGTGGNL 81
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 2e-09 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 3/197 (1%) Query: 1 MAERGRPRSFD-KDAALECAMQVFWRLGYEGASMADLTSAMGIASPSLYAAFGSKEALFR 59 MA + + + + + L+ A+++F + G S+ ++ A G+ ++Y F K LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 60 QALE-HYRETEGREIWDGVERADTAYDAIRNYLMQTARV-FTRRSKPAGCLIVLSALHPA 117 + E E+ + +R L+ T + I+ Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 ERSDTVRQTLIEMREETVDALRVRLRAAAAAGEIAAQANVDAIARYYVTVQQGMSIQARD 177 V+Q + E+ D + L+ A + A A G+ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 178 GASRRDLEAVAHAALAA 194 DL+ A +A Sbjct: 181 APQSFDLKKEARDYVAI 197
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 132 bits (333), Expect = 7e-40 Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 15/254 (5%) Query: 4 LQGKRALVTGGSRGIGAAIAKRLAADGADVAITYEKSAERARAVVAEIETLGRRAVAIEA 63 ++GK A +TG ++GIG A+A+ LA+ GA +A + + E+ VV+ ++ R A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 64 DSADPAAVRAAVDRAADTLGGLDILVNNAGIFRAGSLDALTLDDIDATLNVNVRAVIVAS 123 D D AA+ R +G +DILVN AG+ R G + +L+ ++ +AT +VN V AS Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 124 QAAARHL--GEGGSIVSTGSCLATRVPDAGMSLYAASKAALIGWTQGLARDLGPRGITVN 181 ++ ++++ GSIV+ GS VP M+ YA+SKAA + +T+ L +L I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSN-PAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 182 IVHPGSTDTDMNPA-----DGEH----ADAQLARMAIP--RYGKADDVAALVAFVVGPEG 230 IV PGST+TDM + +G + + IP + K D+A V F+V + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 231 RSINGTGLTIDGGA 244 I L +DGGA Sbjct: 244 GHITMHNLCVDGGA 257
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (275), Expect = 4e-31 Identities = 74/257 (28%), Positives = 115/257 (44%), Gaps = 11/257 (4%) Query: 3 LQGIRALVTGADSGIGQAIATLFAQEGADVAIVYHTDDDGAQETVRRIQALGRRACAIQA 62 ++G A +TGA GIG+A+A A +GA +A V + + ++ V ++A R A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAV-DYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVGDPRSVDAFFAEAMNTLGGLEVLVNNAGVGAPGAAVADLEDAQIDTVLRTDLLGPLYC 122 DV D ++D A +G +++LVN AGV PG + L D + + + G Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGL-IHSLSDEEWEATFSVNSTGVFNA 123 Query: 123 CRAFVRQRRAVGGGGRIVNISSVAQHLPTPESAPYGIAKAGLGSLARSLSREVAEDRINV 182 R+ + G IV + S +P A Y +KA + L E+AE I Sbjct: 124 SRSVSKYMMDRRSGS-IVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 183 NNIAPGLIDTPMTRDRLND---PQQRDASMSV-----IPWHRPGQPEEIARVALFLASDD 234 N ++PG +T M D +Q IP + +P +IA LFL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 235 GDYVTGQTWPIDGGLTM 251 ++T +DGG T+ Sbjct: 243 AGHITMHNLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 2e-23 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 7 TVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRQPDLVIVDLGLPDTDGLD 66 T+++ +D+ IR + AL V A DLV+ D+ +PD + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 VIRELR-GWSEVPVIVLSARTQEEEKVAALDAGADDYLTKPFGVSELRARIRAQL--RRR 123 ++ ++ ++PV+V+SA+ + A + GA DYL KPF ++EL I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 NLGGANESPKVSFGTVSVDLALRQVWRDGEIVHLTPL 160 + + V A+++++R + T L Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 87.7 bits (217), Expect = 6e-26 Identities = 47/104 (45%), Positives = 71/104 (68%) Query: 6 TLIIVVQVLSALGVIGLVLLQHGKGADMGAAFGSGASGSLFGATGSANFLSRTTAVLATV 65 ++VV ++ A+G++GL++LQ GKGADMGA+FG+GAS +LFG++GS NF++R TA+LAT+ Sbjct: 3 EALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATL 62 Query: 66 FFVATLALTYIGSYKSTPSAGVLGGVATAPAPVSAASTPAAPAS 109 FF+ +L L I S K+ + A A + + PA P S Sbjct: 63 FFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTS 106
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 29.1 bits (65), Expect = 0.029 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 10/96 (10%) Query: 138 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 190 Y GW+ F+ A Y+++ + G + Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85 Query: 191 NSQQHGFFAGHGVNFLSWNWLPLLPAFVVYFISGIA 226 S ++G + GV + P+ +Y G Sbjct: 86 GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 1e-07 Identities = 66/348 (18%), Positives = 117/348 (33%), Gaps = 17/348 (4%) Query: 50 FGLALALQNLIWGIAQPFTGMIADRFGSVRVIVVGMLLYALGLVTMALAGSAALFTVGAG 109 +G+ LAL L+ P G ++DRFG V++V + A+ MA A L+ + G Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP--FLWVLYIG 102 Query: 110 LVIGIALSGSAFASVYGALSRLCAPERRSWALGVAGAIGGLGQFCMVPVAQTLIGDIGWQ 169 ++ ++G+ A ++ + + R+ G A G G PV L+G Sbjct: 103 RIVA-GITGATGAVAGAYIADITDGDERARHFGFMSACFGFG-MVAGPVLGGLMGGFSPH 160 Query: 170 HAFVALALVALLLAPLAVLLRDRPAQAANAHADAEQ-SIGEAVREAFSHRGFWLLNAGFF 228 F A A + L L + E + + R A L A FF Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 229 ACGFQLAFIATHLPAYLLDH-GLPSRHASVALALIALTN-VVGTYACGHLGGLLRRKYVL 286 A + D + ++LA + + + G + L + L Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 287 --SVLYLVRAFAMAAFVAVPLSPASVYVFAAVMGLTWLGTV--PLTNGVISQVFGVRYIA 342 ++ + + AF ++ +M L G + P ++S+ Sbjct: 281 MLGMIADGTGYILLAFA------TRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQG 334 Query: 343 TLFGFVFFGHQLGSFFGVWLGAVVYDATHSYLPLWIGSIALGVLAALL 390 L G + L S G L +Y A+ + W + L Sbjct: 335 QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 28.4 bits (63), Expect = 0.032 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Query: 30 IDTAGRLKEICAKLNIPFIYKS---SYDKANRSSGKSFRGLGMDEG 72 +LK C +L IP +Y + S + +R+ F G G++ G Sbjct: 57 SANIRKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSG 102
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 77.1 bits (190), Expect = 5e-18 Identities = 75/331 (22%), Positives = 127/331 (38%), Gaps = 37/331 (11%) Query: 21 VAVAACGAVAHAQSTLTLYGALDVGVQYLTHA--DAHRSAVQLQNYGIVP--SQIGIKGS 76 +A+ A + +TLYG + GV+ + ++A GIV S+IG KG Sbjct: 6 IALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQ 65 Query: 77 EPLGGGWRALFKLEQGINVNDGTATVPGLAFFRGAYVGIAGPIGTVTLGRQFSVLFDKTL 136 E LG G +A++++EQ ++ + R +++G+ G G + +GR SVL D Sbjct: 66 EDLGNGLKAIWQVEQKASIAGTDSGW----GNRQSFIGLKGGFGKLRVGRLNSVLKDTGD 121 Query: 137 FYDPLWYASYSGQGVIVPMSANFIDRSVKYQSPTFAGFDVEALVATAGIAGNTRAGR--- 193 +P S + + SV+Y SP FAG + A N AGR Sbjct: 122 I-NPWDSKSDYLGVNKIAEPEARL-ISVRYDSPEFAGL-----SGSVQYALNDNAGRHNS 174 Query: 194 -VLELGGQYTSNGLSVG-AVLHQSHGDVSATDDASGRRRELGTLAARYAFAALPLTVYAG 251 G Y + G V ++ H V ++ + + ++ L + Y AL +V Sbjct: 175 ESYHAGFNYKNGGFFVQYGGAYKRHHQV--QENVNIEKYQIHRLVSGYDNDALYASVAVQ 232 Query: 252 VERRT----GDLDAARTIV-------WGGARYLTAGGIGLNAGVYHTDSRTPAIGHPTLF 300 + ++T V +G + G T+ Sbjct: 233 QQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNN----DYDQV 288 Query: 301 IASTTYALSKRSVAYVNLGYARNGNRSSQTV 331 + Y SKR+ A V+ G+ + G S+ V Sbjct: 289 VVGAEYDFSKRTSALVSAGWLQEGKGESKFV 319
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.013 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 16/113 (14%) Query: 43 LCNEIIRDEAAAAGVEASLSRSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRLK 102 L E A PS E ++G+ A + + Sbjct: 102 LPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAA-----------MQEIY 150 Query: 103 HLDKKDDVELSKSNILLIGPTGSGKTLLAQTLARL---LNVPFVIADATTLTE 152 + + + + +++ G +G+GK L+A+ L N PFV + + Sbjct: 151 RVLAR--LMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR 201
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 42.4 bits (99), Expect = 6e-06 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 15/192 (7%) Query: 92 KVLVEGLQRAKALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKI 151 L + L+ A S + + E A A+ E ++ K + Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAE-KAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 152 PPEILTSLSGIDEAGRLADMIAERLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQ 211 E + E + + + + + LE A LE + +L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE---KAALEAEKADLEHQSQVLN 308 Query: 212 VEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEEGAD--LEELEKRINAARMPKEA 269 R ++R ++ S+ +Q++A ++L E + ++ + L + ++A+R EA Sbjct: 309 AN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEASRQSLRRDLDASR---EA 359 Query: 270 KKKADAELKKLK 281 KK+ +AE +KL+ Sbjct: 360 KKQLEAEHQKLE 371 Score = 30.0 bits (67), Expect = 0.044 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 18/103 (17%) Query: 201 AQLEAEIDILQVEKRI----RGRVKRQMEKSQRE--------YYLNEQVKAIQKELGEGE 248 QLEAE L+ + +I R ++R ++ S+ N ++ A++K E E Sbjct: 361 KQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELE 420 Query: 249 EGADLEELEKRINAARMPKEAKK------KADAELKKLKLMSP 285 E L E EK A++ EAK K EL KL+ Sbjct: 421 ESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKA 463
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 77.9 bits (192), Expect = 4e-18 Identities = 61/220 (27%), Positives = 91/220 (41%), Gaps = 37/220 (16%) Query: 11 LGVLSVPAFAQSSVTLYGVIDTGIEYVTHANAAGD--RLVRMPGITGEVPSRWGLRGSEE 68 L + ++P A + VTLYG I G+E G V ++ S+ G +G E+ Sbjct: 8 LTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQED 67 Query: 69 LGGGLKTVFQLESGFNPRGGDLGQGGRLFGRQAWVGLQGPWGKLSFGRQYSMT-----FW 123 LG GLK ++Q+E + G D G G RQ+++GL+G +GKL GR S+ Sbjct: 68 LGNGLKAIWQVEQKASIAGTDSGWG----NRQSFIGLKGGFGKLRVGRLNSVLKDTGDIN 123 Query: 124 ALTD-SDILGPDIYGSASLDAYIPNARSDNAIAYMGTFRGLTLGAMYSFGRDSAGTGNSP 182 SD LG + A +A + + R D+ F GL+ Y+ D+AG NS Sbjct: 124 PWDSKSDYLGVNKI--AEPEARLISVRYDSP-----EFAGLSGSVQYA-LNDNAGRHNSE 175 Query: 183 GQGTCAGSVAGHFTQCRQWSAMIKYDTQSFGVSAAYDEQR 222 + A Y F V +R Sbjct: 176 S-----------------YHAGFNYKNGGFFVQYGGAYKR 198
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.9 bits (132), Expect = 3e-10 Identities = 39/202 (19%), Positives = 84/202 (41%), Gaps = 4/202 (1%) Query: 19 HAGILFWCALIIIFDGYDLAVVGIALPSIMAEMKVGPTGAGLMVSSALFGMMLGAVFLGT 78 H IL W ++ F + V+ ++LP I + P + ++ + +G G Sbjct: 12 HNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71 Query: 79 IADRIGRVRAIVICILLFSIFTAAAGVAHGPVTFCI-ARFLAGLGIGGVMPNVVAQMTEF 137 ++D++G R ++ I++ + V H + I ARF+ G G V+ + + Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 138 SPRRIRSTLVTLMFSGYSVGGMLAALVGKAMIARYGWQSVFIAAGLPVLLVPAILAYMPE 197 P+ R L+ S ++G + +G + W + + + ++ VP ++ + + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 198 SMSFLIRKGRTDTVGHVLSRIA 219 + KG D G +L + Sbjct: 192 EVR---IKGHFDIKGIILMSVG 210
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.022 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Query: 17 RVADATGELTILDGISLAVRPG----SSLAIVGASGSGKSTLLGLLAGLD 62 R G+ ++ ++ + PG S+ + G G GKSTL+ L GLD Sbjct: 571 RYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 4e-04 Identities = 45/247 (18%), Positives = 78/247 (31%), Gaps = 49/247 (19%) Query: 576 VVGQDEAINAVADAIRRSRAGLADPNRPYGSFLFLGPTGVGKTELCKALASFLFDSEEHL 635 +VG+ A+ + + R L + + G +G GK + +AL + Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLT---LMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 636 IRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSV-------ILLDEIEKA 688 + I+M+ + L G+E+G + T A R + LDEI Sbjct: 192 VAINMAAIPRDLIESEL-------FGHEKGAF-TGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 689 HPDVFNVLLQVLDDG---RMTDGQGRTVDFKNTVIVMTSNLGSQVIQSMTGSPQDEIKDA 745 D LL+VL G + D + ++ + + I Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR-------------IVAATNKDLKQSINQ- 289 Query: 746 VWLEVKQHFRPEFLNRIDDVVVFHGLDRHNIESIAKIQLAR-LHDRLAKLDM-ALDVSPA 803 FR + R++ V + R E I L R + K + Sbjct: 290 ------GLFREDLYYRLNVVPLRLPPLRDRAEDIP--DLVRHFVQQAEKEGLDVKRFDQE 341 Query: 804 ALEQIAK 810 ALE + Sbjct: 342 ALELMKA 348 Score = 32.1 bits (73), Expect = 0.010 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 31/168 (18%) Query: 136 LEAAIAAVRGGSQ-------VHSQDAESQREALKKYTVDLTERARAG-KLDPVIGRDDEI 187 AI A G+ ++ AL + ++ P++GR + Sbjct: 87 FMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAM 146 Query: 188 RRSIQILQRRTKNN-PVLI-GEPGVGKTAIVEGLAQR----------IVNGEVPETLKGK 235 + ++L R + + ++I GE G GK + L I +P L Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDL--- 203 Query: 236 RVLSLDMAALLAGAKYRGEFEERLKAVLNDIAKDEGQTIVFIDEIHTM 283 + + L G + +G F + EG T+ F+DEI M Sbjct: 204 ------IESELFGHE-KGAFTGAQTRSTGRFEQAEGGTL-FLDEIGDM 243
>PF06776#Invasion associated locus B Length = 214 Score = 28.0 bits (62), Expect = 0.022 Identities = 15/61 (24%), Positives = 22/61 (36%) Query: 123 TATAGTTAAAPAPAPAASTPSAATKPAKSKRASKKEKAAAAAAASADAGASASAPAAASS 182 T A A PA +P A+ ++R + A A A + G S A A + Sbjct: 17 TNHAVPALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGWSDRADAQGAV 76 Query: 183 T 183 Sbjct: 77 R 77
>PF06291#Lambda prophage Bor protein Length = 102 Score = 24.6 bits (53), Expect = 0.041 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 1 MKRMLLAAVMLASTLGVAQAQTQTFHFGEGQATPAGATT 39 MK+ML +A + G AQ QT T TP T Sbjct: 6 MKKMLFSAALAMLITGCAQ-QTFTVGNKPTAVTPKETIT 43
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 39.4 bits (92), Expect = 1e-05 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 15/159 (9%) Query: 21 QDALQQALLLAAIDPSIGGVLVSGPRGTAKSTAARALAELLP--EGAFVTLPLSATDEQV 78 Q+ + L D + ++++G GT K ARAL + G FV + ++A + Sbjct: 147 QEIYRVLARLMQTDLT---LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDL 203 Query: 79 TGTLDLAHALAE--NGVRFRGGLLARAHRGVLYVDEVNLLADGLVDTLLDVAASGVNVVE 136 + H G +A G L++DE+ + LL V G Sbjct: 204 IESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG--EYT 261 Query: 137 RDGVSHAH--DARFVLVGTMNPE----EGELRPQLLDRF 169 G D R V + + +G R L R Sbjct: 262 TVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.8 bits (74), Expect = 0.003 Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 237 AIHAGEAPNVIPDRAQMRLSVRALKPEVRDLLETR 271 AI+ P+V PD A ++ L PE RDLL+ R Sbjct: 227 AINQEPVPHVQPDIATTTTDIQGLPPEARDLLDER 261
>PF06776#Invasion associated locus B Length = 214 Score = 29.5 bits (66), Expect = 0.033 Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 11/115 (9%) Query: 8 RLRAIA--AAASVAFGAAAAGQAFAQTTPAANAQAAAPNAASAGTLPAITVNAASEGDGT 65 L+AI A A+ A A A A + + A +A Sbjct: 23 ALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGWSDRA---DAQGAVRSV 79 Query: 66 VGLVAKRSRTGTKTDTPIEEIPQTI------NVVTAQQIEMTGATDVNTALRYVP 114 G R T + Q++ N I T P Sbjct: 80 HGDWQIRCDTPPGAKAEQCALIQSVVAEDRSNAGLTVIILKTADQKSKLMRVVAP 134
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 119 bits (299), Expect = 2e-33 Identities = 75/302 (24%), Positives = 130/302 (43%), Gaps = 19/302 (6%) Query: 41 PPASRRTL--SLAGNPVVSQ--ASATMPVRPQRVVALDFMFAESVVALDLIPVGMADTAF 96 P SRR L ++A +P++ Q + + P R+VAL+++ E ++AL ++P G+ADT Sbjct: 5 PLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTIN 64 Query: 97 YPGWLGYESARIAHVTDIGSRQEPGLEAIAAVRPDLIIGVGFRHAPIFDALDRIAPTILF 156 Y W+ E V D+G R EP LE + ++P ++ + P + L RIAP F Sbjct: 65 YRLWVS-EPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW-SAGYGPSPEMLARIAPGRGF 122 Query: 157 QFSPNVSEGGVPVTQLDWMRQIFRTIGTVTGRDARARAVEAQLDAGLARNAARLSAAGRA 216 FS L R+ + + + A AQ + + R + Sbjct: 123 NFSDGKQ-------PLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFV---KR 172 Query: 217 GERIALLQELGLPDRYWAYTGNSTAAGLARALGLV-PWPKKPTREGTIYVTSADLLTQRD 275 G R LL L P + NS + G+ W + G+ V+ L +D Sbjct: 173 GARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKD 232 Query: 276 LAILFVTATALDVPLSAKLDSPVWRFVPAWRAHRIAMIERNIWGFGGPMSALKLADVMTD 335 + +L + A + +P+W+ +P RA R + +W +G +SA+ V+ + Sbjct: 233 VDVLCFDHDNSKD-MDALMATPLWQAMPFVRAGRFQRVP-AVWFYGATLSAMHFVRVLDN 290 Query: 336 TM 337 + Sbjct: 291 AI 292
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 81.2 bits (200), Expect = 3e-20 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 17/194 (8%) Query: 64 YGGDP--ARHTRALVSQWSKYYFGRAVPAGVVAALTLGRPLDMTPERTFVAL-DDGMPAA 120 Y P R + L+S W+++Y G VP ++A LT + LD++PE + G A Sbjct: 78 YRNQPMMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETGRVAC 137 Query: 121 LYF--AADALGAPCDEPARRHAGLVAHLRATIALLAGIGGVTQRVLWSNAGNLLDFLFDR 178 + D P R + L + L G + +++WSN G L+++ Sbjct: 138 FWVDVCEDKNATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTE 197 Query: 179 YRTL--PCAVDRARDAEWLFGATCLDGEPNPLRLPVRDVVPRSPLLPTPFRARRVCCLRY 236 + L V+ R A F T +GE NPL R VV R LL RR CC RY Sbjct: 198 MKQLLGEATVESLRHA-LFFEKTLTNGEDNPL---WRTVVLRDGLL-----VRRTCCQRY 248 Query: 237 EIPGETQLCGSCPL 250 +P Q CG C L Sbjct: 249 RLPD-VQQCGDCTL 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.032 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 35 VTALCGPNGCGKSTLLRTLAGLQ 57 L G G GKSTL+ TL GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.9 bits (64), Expect = 0.034 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 18 LPTVVSPRGDDGMSIDDVAPLARAIAAD-TLERAGGV 53 L V DDG+++ A+A AD TL+ AGGV Sbjct: 127 LANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGV 163
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 27.3 bits (60), Expect = 0.002 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 1 MKTLLKTLTAAAVAAAVLAPTLAQAHP 27 MK L+ ++AAA A +AP A A P Sbjct: 1 MKKNLRIVSAAAAALLAVAPIAATAMP 27
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 28.3 bits (63), Expect = 0.035 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 45 LAATCLAASLLVTPYAAFGKTHN--ESLLQQAIDFVSRLLPTPTHEAPATQVVESAFSPD 102 + A+LL P AA + + + +Q+ I+ VS+ L P+ + + S D Sbjct: 11 SLTLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYD 70
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.011 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 8/97 (8%) Query: 27 DLVDSHQEHVDALNAFGATITGALELNVPVRALTPDQLTGRYDLVFLLTKQTVNQAILTT 86 + + + ++ G ++ A VPVR + TG Y++ T ILT Sbjct: 361 NEARGNTTTLSVVSTDGVSVPKA----VPVRMAAYNATTGLYEVTVPSTTAEAPPLILTW 416 Query: 87 L--LPHLHAD--SIVCTLQNGIPEHAVAALVGAERTV 119 P + + S + +P + A L + T Sbjct: 417 TPASPPGNQNPSSTTPVVPKPVPVYEGATLTPVKATP 453
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 5/168 (2%) Query: 27 LDFMVFTFVITTLISIFKIDSTQAGLLATVTLLFSAIGGWIAGILADRYGRVRILQATIL 86 L+ MV + + + F + T +L +IG + G L+D+ G R+L I+ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 87 WFSGCTVAIGFAQNFEQIFVL-RALQGLGFGGEWAVGSVLMGEIVRTEFRGRAVGTVQSA 145 +V +F + ++ R +QG G A+ V++ + E RG+A G + S Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 146 WSIGWGIAAIVYTVLFSWLPEDYAWRALFWVGALPALLVLYMRKGVPE 193 ++G G+ + ++ ++ W L + + + V ++ K + + Sbjct: 148 VAMGEGVGPAIGGMIAHYI----HWSYLLLIPMITIITVPFLMKLLKK 191
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 66.8 bits (163), Expect = 3e-14 Identities = 73/312 (23%), Positives = 122/312 (39%), Gaps = 15/312 (4%) Query: 11 TIAAYLGWTLDAFDFFLMVFVLKDIAAEFASTIPAVA---FALTLTLAMRPLGALIFGRL 67 I LDA L++ VL + + + A L L M+ A + G L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 68 ADRFGRRPTPMVNIACYSVLELASGFAPSLTALLVLRALFGIAMGGEWGVGSALTMETVP 127 +DRFGRRP +V++A +V AP L L + R + GI G V A + Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITD 125 Query: 128 THARGIVSGLLQAGYPSGYLLASIVFGLFYQYIGWRGMFMIGVLPALLVLYVRAHVPES- 186 R G + A + G + ++ GL + F L L L +PES Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 187 PAWKQMEKRERPSLATTLQRNWKLTIYAIVLMTAF--NFFSHGTQDLYPTFLREQHHFDP 244 ++ +RE + + + +T+ A ++ F L+ F ++ H+D Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDA 245 Query: 245 HTVSWITIVLNI-GAIVGGLAFGAISERIGRRRAIFIAALIALPVLPLWAF-SSGPLA-- 300 T+ I ++ + G ++ R+G RRA+ + + L AF + G +A Sbjct: 246 TTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFP 305 Query: 301 ----LAAGAFLM 308 LA+G M Sbjct: 306 IMVLLASGGIGM 317
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.3 bits (164), Expect = 1e-15 Identities = 19/74 (25%), Positives = 30/74 (40%) Query: 28 TKARILDAAEDLFIEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAMLSRRLDQLN 87 T+ ILD A LF + G + S+ +I A V A+ +HF K L + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 88 QERLAILDRFDAQL 101 + L +F Sbjct: 72 ELELEYQAKFPGDP 85
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.003 Identities = 8/106 (7%), Positives = 34/106 (32%) Query: 124 YDEARAEMIYRDFSRQAERLAVNELRAAKLESQKVQMDRQIEVAQERARRLQADVSIARE 183 D + + + R + + ++++ + + S+ +E Sbjct: 134 ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193 Query: 184 QQAAVADRQKSVRDETAALQAQQAELQAQLRALQQQVRSLQREANA 229 Q + +++ +A++ + A++ + R + + Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 293 bits (752), Expect = 1e-96 Identities = 131/473 (27%), Positives = 206/473 (43%), Gaps = 49/473 (10%) Query: 20 ADIVDRVARCMASFDVEVIRADNAEISPER-AALRPSLAIISVTMIE-SGAAFLRDWQA- 76 A I + + ++ +V NA AA L + V M + + L + Sbjct: 13 AAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKA 72 Query: 77 NIGMPVVWVGA---------ARDHDASQY---PPEYSHILPLDFTCAELRGMVGKLVTQL 124 +PV+ + A A + A Y P + + ++ + + Sbjct: 73 RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP------KRRP 126 Query: 125 RAHAAETLQPSVLVAHSESMQALLREVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSR 184 ++ LV S +MQ + R + D +++ GE+G GKE +A+ LH+ + + Sbjct: 127 SKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD-YGK 185 Query: 185 YRHGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVVAHKGYFEQAAGGTLFLDEVGDLPL 244 R+G FV +N AIP L ES FGH KG+FTGA G FEQA GGTLFLDE+GD+P+ Sbjct: 186 RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 245 YQQVKLLRVLEDGAVLRVGATSPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIEL 304 Q +LLRVL+ G VG +P++ D R+VAA+NK L Q + GLFR DLYYRL V+ L Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 305 Query: 305 NIPSLEERGAVDKIALFKSFVAEVVGEARLAELPDLPYWLADAVADSYFPGNVRELRNLA 364 +P L +R D L + FV + E ++ + + +PGNVREL NL Sbjct: 306 RLPPLRDRAE-DIPDLVRHFVQQAEKEGL--DVKRFDQEALELMKAHPWPGNVRELENLV 362 Query: 365 ERVGV------------------------TVRQTGGWDAARLQRLIAHARSAAQPVPAES 400 R+ + + + + + ++ Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422 Query: 401 AAEVFVDRSKWDMNERNRVIAALDANGWRRQDTAQQLGISRKVLWEKMRKYQI 453 + E ++AAL A + A LG++R L +K+R+ + Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 29.7 bits (66), Expect = 0.018 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 16/103 (15%) Query: 10 VVAMLCAASALMLWRH----AETRRVRTDAKRFIDSRLEPGARMATPAARPVASSGARTA 65 +VA A S+LM+ + E + A F++S + + RP S G +T Sbjct: 360 IVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQVVHNSYNRPAYSPGHKTQ 419 Query: 66 PPSGDRWNVASKEFRTHLYAVAWEYLDNLVSRAGIEGARGKSV 108 P F YAV+W +++ + R G +G G + Sbjct: 420 P------------FLHDGYAVSWNTVEDSIIRTGFQGESGHDI 450
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 2e-04 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 12/131 (9%) Query: 24 EAHVRW-LADTLVSAG--AVEAASLEPGVLAQRITGINPALVFIDFSEGSEAASVAAAMV 80 +A +R L L AG ++ + I + LV D E A + Sbjct: 12 DAAIRTVLNQALSRAGYDVRITSNAATLW--RWIAAGDGDLVVTDVVMPDENAFDLLPRI 69 Query: 81 RAAHPGLPIVALGSLAQPESTLAALRAGVRDFI-------DVSAPAEEALRTTRGLLANV 133 + A P LP++ + + + + A G D++ ++ AL + + + Sbjct: 70 KKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKL 129 Query: 134 GEPASRHGKVV 144 + + +V Sbjct: 130 EDDSQDGMPLV 140
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 138 bits (348), Expect = 2e-37 Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 8/261 (3%) Query: 159 VQVDVRVVEFSRSVLKQVGFNF-FKQSNGFSFGSFLPSGVQSFGGGSGPGSAGYIPTLGS 217 V V+ + E + +G + K + F + + G + G + + + Sbjct: 347 VLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLA 406 Query: 218 PVASAFNLVVNAAGRGIFG-DLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVPSP 276 S+FN + +G + L+ L ++ +LA P++V L A+F G E+PV + Sbjct: 407 SALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG 466 Query: 277 QGLGSTA-----IQWKQYGVGLSLTPTVLSPQRIALKVAPESSQLDFVNSVTISGVAVPG 331 S ++ K G+ L + P + + L++ E S + S T S + Sbjct: 467 SQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGAT- 525 Query: 332 ITTRRADTTVELGDGESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLNYQQNDKEL 391 TR + V +G GE+ V+GGL+D+ KVPLLGD+P+IG F++ + + + + L Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 392 LIIVTPHLVAPIAKGAALPAT 412 ++ + P ++ + + Sbjct: 586 MLFIRPTVIRDRDEYRQASSG 606
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 48.6 bits (116), Expect = 2e-09 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 10/126 (7%) Query: 4 LFFAGIFLVWVTLVASSDIRFRNIRNSLVIAGLAGALIGVTVNENPFGISLVQSLIGASI 63 A + + + D+ + + L + L G L+ + +SL ++IGA Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGG---FVSLGDAVIGAMA 190 Query: 64 GLICFFP-------LFAMRVMGAADVKVFAVLGAWCGAQALLGFWIVASLAASLHALWLM 116 G + + L MG D K+ A LGAW G QAL +++SL + + L+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 117 VASRTS 122 + Sbjct: 251 LLRNHH 256
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 2e-04 Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 32 SGSISKGLGGGSSSGGGDIV-TSGGTSGSSGSSGSSGTSGTSGTSGSSSGSTSGSTSGST 90 SG +G G+ S G+I G G+S SG S + G SGS GS Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 91 SG-STSGTTSGTSSGTSGTSGVSANPV 116 G SG SGT G A PV Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPV 88
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.5 bits (71), Expect = 0.009 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 385 APVTGLLNTVTGAVGGAAGSAGGTSSPLAPVTSLVGGVTGSAST 428 A +T + +TV +V +A TS APV++LVG VTG S Sbjct: 366 ASLTTI-STVLASVSSGISAAATTSLVGAPVSALVGAVTGIISG 408
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.002 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 20/117 (17%) Query: 32 VGSTMVRRWVASYREHGEDGLSK-----------KHSHYDARFKL----SVLQRMWRDEL 76 +GS+ W Y G + YDA F +V MW L Sbjct: 152 IGSSPNSYWGEDYY--WSVGANAVFGVQPTFEGTSMGSYDATFLEDSYNTVNSIMWAGNL 209 Query: 77 SYARVAVVFGIRNERSIPVWERLYHEGGIEALMPRRRGRPPKMT-TLPPPKPTDDAA 132 + + I + + E YH G ++MP R P T TLP P + A+ Sbjct: 210 AATHAGNIGNITHIGAHYYREA-YHVLGDGSVMPYR-AMPKTNTYTLPASLPQNQAS 264
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 29.2 bits (65), Expect = 0.007 Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 28/122 (22%) Query: 3 QLTRPLRTLALAGALLACAAPSFAQADSPVGVWQTIDDNTHQPKALVQIAED-GDGTLSG 61 ++ RPL +LAL GAL+ S S + T+ P + IA GT+SG Sbjct: 9 KINRPLVSLALVGALV-----SITPQQSHAAFFTTV----IIPAIVGGIATGAAVGTVSG 59 Query: 62 KVIKGLG----ANDTPDR-----RCTACT-----DERKDQLIKGMTIIKAMKKDGDHWDG 107 + GL AN TPD+ R A ++ L K + K DG WD Sbjct: 60 LLGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKI---DGG-WDW 115 Query: 108 GN 109 GN Sbjct: 116 GN 117
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.1 bits (65), Expect = 0.010 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 20/124 (16%) Query: 10 VPVDGEARASSEIIARG---------VGHGHRGLMQLIRKHIVSFQELGPLQFETRKGRA 60 V V G+ A + I G + G + + L HI E G + + Sbjct: 383 VKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNL-HI----EDGNQKPNSSGIEG 437 Query: 61 LPQGGRAMATEYAMLNEHQATLLITFMR--NSPKVVSF----KIALVKEFFRMRDELGRR 114 +P R + A + Q+ ++ R S + I + FR + EL RR Sbjct: 438 IPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRR 497 Query: 115 EQSL 118 L Sbjct: 498 TVRL 501
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.0 bits (62), Expect = 0.043 Identities = 10/41 (24%), Positives = 19/41 (46%) Query: 163 LSTFSAAVTIAGLLTFVGGMVGSAASGAAAVFNGILNVIGQ 203 L++ S+ ++ A + VG V + + +GIL Q Sbjct: 375 LASVSSGISAAATTSLVGAPVSALVGAVTGIISGILEASKQ 415
>SOPEPROTEIN#Salmonella type III secretion SopE effector protein signature. Length = 239 Score = 30.9 bits (69), Expect = 0.006 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%) Query: 148 IPPFIATLGTMVAARGFAKWFTNGMPVSMLTDQFAAIGAGANPVIIFLVIAA 199 I PF+ +G AA+ G+P + D F GAGANP I L+ +A Sbjct: 136 IAPFLQEIGE--AAK------NAGLPGTTKNDVFTPSGAGANPFITPLISSA 179
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 96.3 bits (239), Expect = 8e-26 Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 14/251 (5%) Query: 33 KVAIVTGASKGIGAAIAKALAAEGAAVV-VNYASSKAGADAVVSAIVDAGGRAVAVGGDV 91 K+A +TGA++GIG A+A+ LA++GA + V+Y K + VVS++ A A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL--EKVVSSLKAEARHAEAFPADV 66 Query: 92 SKAADAQRIVDTAIETYGRLDVLVNNSGIYEFAPIEAITEEHYRKQFDTNVFGLLLTTQA 151 +A I G +D+LVN +G+ I ++++E + F N G+ +++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 152 AARHL--GEGASIINISSAITSMVPPASAVYSGTKGAVDAITGVLANELAPRKIRVNAIN 209 ++++ SI+ + S + + A Y+ +K A T L ELA IR N ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 210 PGLVVTEGTHTTGIIGSDLEKQVLAET--------PLGRHGAPDDIASVAVFLASNDARW 261 PG T+ + + +QV+ + PL + P DIA +FL S A Sbjct: 187 PGSTETDMQWSLW-ADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 262 LTGQHLVASGG 272 +T +L GG Sbjct: 246 ITMHNLCVDGG 256
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 26.9 bits (59), Expect = 0.045 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 5/43 (11%) Query: 6 DIRALRAWYGHQPVL-----DGIDLALALGETLALLGRNGAGR 43 D+ W G +PV DGI L A G + L R G Sbjct: 63 DVACAEQWLGDKPVSWSPTPDGIWLMNAEGTGITHLNRQKEGE 105
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 31.9 bits (72), Expect = 0.006 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Query: 487 DALRHCRPRRTGDVVTADAAHLYVFLFACEPADADDALARIFDVPVDTLSDRVLCL 542 D L H P G V+A A HL V A A R F++PV LS R LC+ Sbjct: 58 DWLEHVSPALAGAAVSAGAEHLVVPWLA--------ATERPFELPVPHLSCRRLCV 105
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.028 Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 17/148 (11%) Query: 640 PDDPDLLAAIGTQWIEAGETERGLAPLHDWIAAHPADADADVRLRYGDLLGSARRDDALA 699 P D A GT G + G P +W+ D A +RLR LL A Sbjct: 403 PKKRDPSAGAGTDPGGPGGGDDGEDPFGEWL----DDEVARLRLRGRWLL-----KPRRA 453 Query: 700 AWLDALRRDPALTPAQTARLEDQALRVV------LRQTDDALAQHDDARARALLARVSAA 753 A ++ALR PAL A ++ + V R+ L D R + Sbjct: 454 ALIEALRSAPAL--AGCVAFDELREQPVAVRAFPWRKAPGPLEDADVLRLADYVETTYGT 511 Query: 754 GRADKRYALELADVERAQGRYDAARDAL 781 G A + + +V R RD + Sbjct: 512 GEASAQTTEQAINVAADMNRVHPFRDWV 539
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 98.3 bits (245), Expect = 3e-25 Identities = 94/390 (24%), Positives = 142/390 (36%), Gaps = 63/390 (16%) Query: 1 MKRTALSLISLASLAAAPLAHAQTSVTLYGVIDTSITYVNHAQGKDSAWLLGNSSAGNLA 60 MK++ ++L LAA P+A A VTLYG I + + + + A + + Sbjct: 1 MKKSLIALT----LAALPVA-AMADVTLYGTIKAGV-ETSRSVAHNGAQAASVETGTGIV 54 Query: 61 --GSRWGIKGAEDLGGGLKALFQLENGFDPSSGRLGQGNRMFGRQAFVGLSSDRYGTITL 118 GS+ G KG EDLG GLKA++Q+E + G + RQ+F+GL +G + + Sbjct: 55 DLGSKIGFKGQEDLGNGLKAIWQVEQK----ASIAGTDSGWGNRQSFIGLKGG-FGKLRV 109 Query: 119 GRQYDPLIDLVQGITADNYFGSVFATPGDVDNYDNSFRVDNAVKYTSPVLGGLQFSAMYS 178 GR L D I + + + + +V+Y SP GL S Y+ Sbjct: 110 GRLNSVLKD-TGDINPWDSKSDYLG--VNKIAEPEARLI--SVRYDSPEFAGLSGSVQYA 164 Query: 179 FGGIAGSTGSAQSYSAAVSYSNGPFSVAGGYFHANNSPASNGLRDGWTSSSDGTFDGPIN 238 AG S +SY A +Y NG F V G + + I Sbjct: 165 LNDNAGRHNS-ESYHAGFNYKNGGFFVQYGGAYKR--------------HHQVQENVNIE 209 Query: 239 SGYASAHSIGIARVAGQ-YVAGPFTFGLGYSNAQYRRDGSSVFGSNEHYNTGQ-GFVNYQ 296 H + Y + +A+ + S E T F N Sbjct: 210 K--YQIHRLVSGYDNDALYASVAVQQQ----DAKLVEENYSHNSQTEVAATLAYRFGNVT 263 Query: 297 ATNALLVGVGYSYTRSGGDTSATYHQVSAGADYTLSKRTDVYLTAAYQHASGQTGDGSGG 356 + G S+ + + Y QV GA+Y SKRT ++A + Q G G Sbjct: 264 PRVSYAHGFKGSFDATNYNN--DYDQVVVGAEYDFSKRTSALVSAGWL----QEGKGESK 317 Query: 357 TMAAQASIGSYGYAGTSSQTIVNLGLRHRF 386 T +GLRH+F Sbjct: 318 F----------------VSTAGGVGLRHKF 331
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 34.0 bits (77), Expect = 0.001 Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 258 PTQVFDDGARIYVQFSDMKHVPAIFTETSSGRVLMS 293 P+++FDDG Y F ++ PAIF G++ M+ Sbjct: 416 PSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMT 451
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 1e-15 Identities = 34/138 (24%), Positives = 55/138 (39%) Query: 2 GAVLIVDPDGHTREALGALLRGCQIDASTLADVSLLTARVTEAPPAVIVLRVAHAAVDAH 61 +L+ D D R L L D ++ + L + ++V V +A Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 AVLGALRAAGHDMPVLVLSRSRDVVDKVVALEIGADDYLVDPFEPMELVARVRSALRRYR 121 +L ++ A D+PVLV+S + + A E GA DYL PF+ EL+ + AL + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 TRRPAVPRPDTRPPYTFG 139 R + G Sbjct: 124 RRPSKLEDDSQDGMPLVG 141
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 121 bits (305), Expect = 2e-32 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 9/260 (3%) Query: 1 MSNASMRGKLVLVTGGAKNVGKAICRRFAEQGAHVILNFFHSLDASKQTAAELRALGATV 60 M+ + GK+ +TG A+ +G+A+ R A QGAH+ ++ + ++ + L+A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHA 59 Query: 61 DVIRASVAQQAQVDRMFDEIERRYGRLDVLVNNAASGALLGVDAIGAEHFDRALDTNLKG 120 + A V A +D + IER G +D+LVN A + ++ E ++ N G Sbjct: 60 EAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTG 119 Query: 121 AFWCARRAAALIERSGGGAIVNVSSVGATLVPANYLVVGTAKAALESLTRYLAVEYAPRN 180 F +R + + G+IV V S A + + ++KAA T+ L +E A N Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 181 IRVNAASSTLIDGDVAAQFPDPDNTKRSSIAAT--------PLKRLATADDLADVVLFLA 232 IR N S + D+ +N I + PLK+LA D+AD VLFL Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 233 SDAARWVTGQVVVADGGLSL 252 S A +T + DGG +L Sbjct: 240 SGQAGHITMHNLCVDGGATL 259 Score = 31.9 bits (72), Expect = 0.019 Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 1526 ADVLDADGTRAAIDAILAREGRVDLLVNAAGLNRSASVRVKSFDDFVAVRDIKVRGYWNL 1585 ADV D+ I G +D+LVN AG+ R + S +++ A + G +N Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.2 bits (94), Expect = 8e-06 Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 43/164 (26%) Query: 4 RALIVGASGIVGRALADRLLSSGWTVYG-----------LSRGRTASV--PGCQPVVADL 50 + L+ GA+G +G ++ RLL +G V G L + R + PG Q DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 51 TSAESVAAATQNIEVSHVFFT---AWARQATEK----ENIRVNGAMVRNVLDSLGRRTKL 103 E + + VF + R + E + + G + N+L+ R K+ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFL--NILE-GCRHNKI 118 Query: 104 EHAALVTGLKHYLGPFEAYAS-----GAVPDTPFRESQG-RQPV 141 +H L+ YAS G PF PV Sbjct: 119 QH--LL------------YASSSSVYGLNRKMPFSTDDSVDHPV 148
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.3 bits (65), Expect = 0.003 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 42 VLYAVVGLSATFGLAFACMAAIVTAARTPY-LTETAWAVAAFWILASI 88 V + V L ++ AF+ A A R Y L AWAVAAF+ + ++ Sbjct: 450 VTFTVTVLDSSRQFAFSFENACTIAERLRYMLLALAWAVAAFFCIRTV 497
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 156 bits (396), Expect = 1e-48 Identities = 76/146 (52%), Positives = 97/146 (66%), Gaps = 5/146 (3%) Query: 74 AQAPQPPVAPV-APAITSQKITYQADALFDFDKATLKPLGKQKLDELASKIQGMN--TEV 130 AP AP AP + ++ T ++D LF+F+KATLKP G+ LD+L S++ ++ Sbjct: 195 EAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGS 254 Query: 131 VVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVPANKIYTEGKGKRNPVT--TGCNQ 188 VV GYTDRIGSD YN LS RRAQ+V YL+SKG+PA+KI G G+ NPVT T N Sbjct: 255 VVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNV 314 Query: 189 KNRKQLIACLAPDRRVEVEVVGTQEV 214 K R LI CLAPDRRVE+EV G ++V Sbjct: 315 KQRAALIDCLAPDRRVEIEVKGIKDV 340
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.045 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 264 ELDKYSRDLTKMAREG-KLDPVIGRAQEIETTIEVLARRKKNN-PVLI-GEPGVGKTAI 319 L + R +K+ + P++GR+ ++ VLAR + + ++I GE G GK + Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.001 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 16/110 (14%) Query: 102 NLILTGPTGAGKTWIACAFGQQACRQGFSVMYVRVARLFEELK----IAHGDGSFT---- 153 L++TG +G GK +A A R+ + + +A + +L H G+FT Sbjct: 162 TLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQT 221 Query: 154 RR--LAQLAKMDVLLLDDWGLQDLDQGARNDLLEVLDD----RVGTRSTI 197 R + A+ L LD+ G +D R LL VL VG R+ I Sbjct: 222 RSTGRFEQAEGGTLFLDEIGDMPMDAQTR--LLRVLQQGEYTTVGGRTPI 269
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 7e-05 Identities = 44/204 (21%), Positives = 68/204 (33%), Gaps = 41/204 (20%) Query: 214 TVEEREKLLHLEQRLHER----------LVGQDEAVRAV-ADAVRLSRAGLREGSKPVAT 262 + + L +R + LVG+ A++ + RL + T Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD--------LT 162 Query: 263 FLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGG 322 + G +G GK +A+AL + G + I+M+ + L G E G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKG 214 Query: 323 QLTEKVRRKPYSV-------LLLDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTI 375 T R L LDEI D LL+V G T GR ++ Sbjct: 215 AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR 274 Query: 376 IIATSNLGSDIIQRRLKARGAAGE 399 I+A +N + LK G Sbjct: 275 IVAATN-------KDLKQSINQGL 291
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 6e-04 Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 54/180 (30%) Query: 187 ARIPKGVLLVGPPGTGKTLLAKAV---AGEAGVPFFSIS---------GSEF--VEMFVG 232 + +++ G GTGK L+A+A+ PF +I+ SE E Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 233 VGAARVRD-LFEQARGQAPAIIFIDELD--------ALGRARGVGG--PIGGHDEREQTL 281 GA FEQA G +F+DE+ L R G +GG Sbjct: 217 TGAQTRSTGRFEQAEG---GTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPI---- 269 Query: 282 NQLLTEMDGFDSSVGLIILAATNRPEILDQALLRAGRFDRQVLVDRPDKKGRLDILKVHV 341 + I+AATN+ + + G F R D RL+++ + + Sbjct: 270 ------------RSDVRIVAATNKDL---KQSINQGLF-------REDLYYRLNVVPLRL 307
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.6 bits (56), Expect = 0.016 Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 7 ERKLEKEEQGKKFHRIERAYGRFVRSFVLPDNVDP 41 ER ++ HR + G+ FV+P N+ Sbjct: 635 ERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPA 669
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.036 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Query: 251 SRSWR----AWLWPGWGNPEPSWLRTHPATQER 279 SRS R AW W GW +P P + +H A + R Sbjct: 196 SRSQRDGSEAWKWRGWDDPRPLYFPSHRAPESR 228
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 80.4 bits (198), Expect = 6e-19 Identities = 46/253 (18%), Positives = 76/253 (30%), Gaps = 41/253 (16%) Query: 58 DLAADEKATIELFEKSRASVVYITTAQLVRDVWTRNVFSVPRGTGSGFIWDDAGHVVTNF 117 L E A + L R + T + + SG + ++TN Sbjct: 60 PLEQREHANVILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGK-DTLLTNK 118 Query: 118 HVIQGASEATVKLA------------DGRDYQAALVGASPAHDIAVLKIG-------VGF 158 HV+ L +G + S D+A++K +G Sbjct: 119 HVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGE 178 Query: 159 KRPPAVPVGTSADLKVGQKVFAIGNPFGLDWTLTTGIVSALDRSLPGEAGGPAIDHLIQT 218 PA + +A+ +V Q + G P T L GEA +Q Sbjct: 179 VVKPA-TMSNNAETQVNQNITVTGYPGDKPVA-TMWESKGKITYLKGEA--------MQY 228 Query: 219 DAAINPGNSGGPLLDSAGRLIGINTAIYSPSGASAGIGFAVPVDTVMRVVPQLIKTGKYI 278 D + GNSG P+ + +IGI+ G+ + + K Sbjct: 229 DLSTTGGNSGSPVFNEKNEVIGIHW---------GGVPNEFNGAV--FINENVRNFLKQN 277 Query: 279 RPALGIEVDEQLN 291 + D+Q N Sbjct: 278 IEDIHFANDDQPN 290
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 3/147 (2%) Query: 2 KLLVIEDENKTADYVRQGLMEAGFVVDLARNGLDGHHQAMSETYDLVILDVMLPDVDGWR 61 +LV +D+ + Q L AG+ V + N + DLV+ DV++PD + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 IVQSLREAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLL---RR 118 ++ +++A +PVL ++A+ +K E GA DYL KPF +EL+ + L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 119 GSAPNHPDRIQIADLLLDLPRRRATRA 145 + D L+ + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>PF09025#YopR Core Length = 143 Score = 29.2 bits (65), Expect = 0.012 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 63 VPTAPAPATAPSASPATPASTPPMDHGGMDMQMQGGSAPADARD 106 + T P A PSASP A+ P +D Q GG PA R Sbjct: 4 IDTPPGFAVYPSASPKA-ANLPAVDQVLAFEQALGGEPPAAGRR 46
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 29.6 bits (66), Expect = 0.026 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 310 AAAKLAGAGARAATSVAGGAKSAFQEGSAAAGGGAKGAKAGLGNVAKTGAQSAGRSAASG 369 AAA L AAT++ A + +A + A +V + + A + + Sbjct: 11 AAAALLAVAPIAATAMPVNAATTI---NADSAINANTNAKYDVDVTPSISAIAAVAKSDT 67 Query: 370 ASGAAQKMTGSFRAGLNGTEAGGDAASGAAGAGQAAADGTA 410 +TGS A NG + + A ++ Sbjct: 68 MPAIPGSLTGSISASYNGKSYTANLPKDSGNATITDSNNNT 108
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 60.2 bits (146), Expect = 3e-13 Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 12/216 (5%) Query: 20 YQAAAQVWD-ERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQS 78 Y A W+ +++ +A K ++A LA + + V PYVI VD++ Sbjct: 13 YFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRN 72 Query: 79 GQVRTVGEA--ATPYLPAD-AQIAHHLARFVTLVRSLSIDPIVVRQNWLDAYDYTTDRGA 135 ++ + D A + LA +V + + + Sbjct: 73 TGEASIAAKLHGDATITYDEAVRKYFLATYVRYRE--GWIAAAREEYFDAVMVMSARPEQ 130 Query: 136 A-VLNDYASKN--DPFARVGRE-SVTVQITSVTRASDASFNVRWTEQRFVNGAPAGTERW 191 Y + N P + V V+I V+ V +T + V G+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDA 189 Query: 192 NAVLS-TVLQTPRTEQRLRKNPLGIYVNGLSWSREL 226 A + V TP E KNPLG V E+ Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQVESYRADVEV 225
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.3 bits (81), Expect = 2e-04 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%) Query: 23 QGKPPPTISLDEPVQAQPLPEPPKPVEVV---AVPEPLALPAQLKPLPKLDEAATAPEPA 79 +PPP ++ + +P+PEPPK VV P+P P +K + + E Sbjct: 65 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR 124 Query: 80 DEKMRVSRANAEARIAPTREGYVNAIQVWPYSDGALYQV 118 + A A + + AL + Sbjct: 125 PASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.016 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%) Query: 198 TRDEVPDPQNLGLWLEVNGKRMQHSN------TSGMIFPVAKLVAY-LSRYMTLYPG 247 + DE+ L +E+ G+ HSN +I K + ++ Y ++YPG Sbjct: 106 STDELGFNSIYSLIIEIMGR---HSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPG 159
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 56.0 bits (135), Expect = 6e-11 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 26/211 (12%) Query: 24 AQAQSSVTLFGVLDGGL-LYTNKTLDPATGRNAGKQVSVIDGGSYYSQLGLTGTEDLGGG 82 A + VTL+G + G+ + + A + ++D S++G G EDLG G Sbjct: 15 VAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD---LGSKIGFKGQEDLGNG 71 Query: 83 VKATFRLVSGLNIANGGLLHCNGNLFGCEAWVGIEGAPGKLKLGLQFSPFFLAVYDTDPR 142 +KA +++ +IA + ++++G++G GKL++G S + DT Sbjct: 72 LKAIWQVEQKASIAGT-----DSGWGNRQSFIGLKGGFGKLRVGRLNS----VLKDTGDI 122 Query: 143 S-----LSLFGSGSIPLVDNVLGTGIFNANAVSYTSPTIAGLQVSGLYAFGGKAGDFQAG 197 + G I + L +V Y SP AGL S YA AG Sbjct: 123 NPWDSKSDYLGVNKIAEPEARL-------ISVRYDSPEFAGLSGSVQYALNDNAG-RHNS 174 Query: 198 RQYAVRVKYQLGGLTVNAAIYDGNSGGTAQT 228 Y Y+ GG V + Sbjct: 175 ESYHAGFNYKNGGFFVQYGGAYKRHHQVQEN 205
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.1 bits (65), Expect = 0.030 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 164 LASMVSFMMFASLAYVAFHVNDPVVMSASII-MMGAVLGFFLWNFPAGLI 212 L ++ MF V DP M I+ M + F FP+GL+ Sbjct: 467 LPILMGVTMFFIQKMSPTTVTDP--MQQKIMTFMPVIFTVFFLWFPSGLV 514
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 72.1 bits (177), Expect = 9e-16 Identities = 52/298 (17%), Positives = 107/298 (35%), Gaps = 44/298 (14%) Query: 285 VMVTGAGGSIGSELCRQILRFAPAQLVAFD-LSEYAMYRLVEELRERFPDQPVVPIIGDA 343 +VTGA G IG + +++L A Q+V D L++Y L + E D Sbjct: 3 YLVTGAAGFIGFHVSKRLLE-AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 344 KDSLLLDQVMSRYAPHIVFHAAAYKHVPLMEEHNAWQALRNNVLGTYRVARAAIRHDVRH 403 D + + + VF + V E N +N+ G + + ++H Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 404 FVLIST---------------DKAVNPTNVMGASKRLAEMACQALQQTSDRTQFETVRFG 448 + S+ D +P ++ A+K+ E+ +RF Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG-LPATGLRFF 179 Query: 449 NVLGSAGS---VIPKFQQQIAKGGPVTV-THPEITRFFMTIPEASQLVLQA--------- 495 V G G + KF + + +G + V + ++ R F I + ++ +++ Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 496 ---------SSMGRGGEIFILDMGQPVKIVDLARDLIRLYGFSEEQIRIEFTGLRPGE 544 ++ ++ + PV+++D + L G + + L+PG+ Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNMLPLQPGD 294
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 107 bits (268), Expect = 7e-29 Identities = 76/347 (21%), Positives = 126/347 (36%), Gaps = 53/347 (15%) Query: 4 IVVTGANGFVGRAVCRRALAAGHTVTAL---------VRRPGECVGGVREWVHAEVDFDG 54 +VTGA GF+G V +R L AGH V + + + D Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQF-HKIDL 61 Query: 55 LNAAWPTDL----GPDCVIHLAARVHVMRDESPDPDVAFDVTNVAGTLRLAEAARKHGVR 110 + TDL + V R+ V R +P D N+ G L + E R + ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAV-RYSLENPHAYADS-NLTGFLNILEGCRHNKIQ 119 Query: 111 RIVFASSIKAVGEGDGGMPLSERASPD-PRDAYGRSKLRAERELAWFGTANGLDVVIVRP 169 +++ASS +V + MP S S D P Y +K E + GL +R Sbjct: 120 HLLYASS-SSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 170 PLVYGPGVRAN--FLRMMDTVARGMPLPL-GSIAARRSIVYVDNLADALLHCAVDP---- 222 VYGP R + + + G + + +R Y+D++A+A++ Sbjct: 179 FTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 223 -------------RAAGECFHVADDDAPSVTDLLRLLGDALGKPARLIRVPSAVLRALGT 269 A +++ + + D ++ L DALG A+ +P G Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP----LQPGD 294 Query: 270 LTGRRAAIDRLTGSLQLDTGRIKRVLGWHPPYTTRQGLEATAAWYRS 316 + A L V+G+ P T + G++ WYR Sbjct: 295 VLETSADTKAL-----------YEVIGFTPETTVKDGVKNFVNWYRD 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.011 Identities = 11/35 (31%), Positives = 19/35 (54%) Query: 95 RYLDEKVAILIAGPTGTGKSHLAQALGHCAARQGR 129 R + + ++I G +GTGK +A+AL R+ Sbjct: 155 RLMQTDLTLMITGESGTGKELVARALHDYGKRRNG 189
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 123 bits (310), Expect = 8e-33 Identities = 76/405 (18%), Positives = 164/405 (40%), Gaps = 20/405 (4%) Query: 14 LIVLCLGVLMIVLDSTIVNVALPSIGTDLHFTETALVWVVNAYLLTFGGCLLLGGRLGDL 73 LI LC+ VL+ ++NV+LP I D + + WV A++LTF + G+L D Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 74 YGQRRMFLAGLVVFTLASLACGLAPSQ-TMLIAARAVQGLGGAVVSAVSLSLIMNLFTEP 132 G +R+ L G+++ S+ + S ++LI AR +QG G A A+ + +++ + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVM-VVVARYIPK 134 Query: 133 GERARAMGVYGFVCAGGGSIGVLLGGLLTSALSWHWIFLVNLPIGIAVYALCAALLPRTR 192 R +A G+ G + A G +G +GG++ + HW +L+ +P+ + L + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKE 192 Query: 193 VPAGAGQLDVAGAITVTASLMLAVYGIVGGNEAGWLSAQTVALIGAAVVLLALFVAIELH 252 V G D+ G I ++ ++ + + +V+ +FV Sbjct: 193 VRI-KGHFDIKGIILMSVGIVFFMLFT---TSYSIS------FLIVSVLSFLIFVKHIRK 242 Query: 253 VAHPLMPLTLFAARNVALANIISVLWAAAMFAWFFLSALYLQRVLGYGPLQVGLAFLPAN 312 V P + L + + + + + + ++ V ++G + Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 313 LIMAAFSLGLSARIVMRFGIRGPIAAGLLIAACGLALFARAPVDGGFVWHVLPGMTLLGI 372 + + +V R G + G+ + + + + + + +LG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLL-ETTSWFMTIIIVFVLG- 360 Query: 373 GAGIAFNPVLLA--AMSDVDPADSGLASGIVNTAFMMGGALGLAV 415 G++F +++ S + ++G ++N + G+A+ Sbjct: 361 --GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403 Score = 31.8 bits (72), Expect = 0.006 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 1/98 (1%) Query: 66 LGGRLGDLYGQRRMFLAGLVVFTLASLACGLAPSQTMLIAARAVQG-LGGAVVSAVSLSL 124 +GG L D G + G+ +++ L T + LGG + +S Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 125 IMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLLTS 162 I++ + E M + F G+ + G L S Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 60.5 bits (146), Expect = 4e-12 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 6/184 (3%) Query: 48 STPAGAEAELWTEVPDVAAPRPVVTPPAPAKVAPPPAPVRDEQAD-IALQQKKRQQEAAA 106 +T + +VP V + + A V PP E + +A K+ + Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 107 REALLEQQRRAQQQKAREEEEARRQQLAAQQAAALAAQKAAEREKQKQAEKLKQQQLAEQ 166 E + ++ A +EA+ A Q +A + +E Q K ++ Sbjct: 1054 NEQDATETTAQNREVA---KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV-EKE 1109 Query: 167 QKLEQQKLQQQKQQQLEAQQAAK-AKAEAAAKAKAEAAAKAKAEAAARAKADSAAKAKLD 225 +K + + + Q+ ++ +Q + K ++E A ++ + A + Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 226 QERR 229 Q + Sbjct: 1170 QPAK 1173 Score = 49.3 bits (117), Expect = 2e-08 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 12/147 (8%) Query: 96 QQKKRQQEAAAREALLEQQRRAQQQKAREEEEARRQQLAAQQAA----ALAAQKAAEREK 151 +++ + + Q + EE AR + A + + AE K Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 152 QKQAEKLKQQQLAEQQKLEQQKLQQQKQQQLEAQQAAKAKAEAAAKAKAEAAAKAKAEAA 211 Q+ K +Q A + Q ++ EA+ KA + A++ + K Sbjct: 1046 QESKTVEKNEQDATETTA------QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 212 ARAKADSAA--KAKLDQERRARLAQMQ 236 + A KAK++ E+ + ++ Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVT 1126 Score = 42.0 bits (98), Expect = 4e-06 Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 4/133 (3%) Query: 77 AKVAPPPAPVRDEQADIALQQKKRQQEAAAREALLEQQRRAQQQKAREEEEARRQQLAAQ 136 AK A + ++A Q + + E +++KA+ E + Q + Sbjct: 1069 AKEAKSNVKANTQTNEVA--QSGSETKETQTTETKETATVEKEEKAKVE--TEKTQEVPK 1124 Query: 137 QAAALAAQKAAEREKQKQAEKLKQQQLAEQQKLEQQKLQQQKQQQLEAQQAAKAKAEAAA 196 + ++ ++ Q QAE ++ K Q + + A++ + + Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 197 KAKAEAAAKAKAE 209 ++ + E Sbjct: 1185 ESTTVNTGNSVVE 1197
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 99.2 bits (247), Expect = 2e-27 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 71 SIYFDFDSYSVKDEYQPLLQQHAQYLKSHPQRH--VLIQGNTDERGTSEYNLALGQKRAE 128 + F+F+ ++K E Q L Q L + + V++ G TD G+ YN L ++RA+ Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 129 AVRRALALLGVADSQMEAVSLGKEKPQATGHDEASWAQNRRADLV 173 +V L G+ ++ A +G+ P +RA L+ Sbjct: 280 SVVDYLISKGIPADKISARGMGESNPVTG---NTCDNVKQRAALI 321
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 183 bits (467), Expect = 2e-57 Identities = 92/350 (26%), Positives = 139/350 (39%), Gaps = 43/350 (12%) Query: 2 ILVTGGAGFIGANFVLDWLRASGEAVLNVDKLT--YAGNLRTL-QSLEGNPKHVFARVDI 58 LVTG AGFIG + V L +G V+ +D L Y +L+ L P F ++D+ Sbjct: 3 YLVTGAAGFIGFH-VSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 59 CDRAALDALFAEHKPRAVLHFAAESHVDRSIHGPADFVQTNVVGTFTLLEAARQYWNGLN 118 DR + LFA V V S+ P + +N+ G +LE R Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN----- 116 Query: 119 DADKAAFRFLHVSTDEVFGSLSATDPQFSETTPYA-PNSPYSATKAGSDHLVRAYHHTYG 177 L+ S+ V+G L+ P FS P S Y+ATK ++ + Y H YG Sbjct: 117 ----KIQHLLYASSSSVYG-LNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 LPTLTTNCSNNYGPYQFPEKLIPLMIANALAGKPLPVYGDGQNVRDWLYVGDHCSAIREV 237 LP YGP+ P+ + L GK + VY G+ RD+ Y+ D AI + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 L------------------ARGVPGETYNVGGWNEKKNLEVVHTLCDLLDAKRPKATGSY 279 A P YN+G + + ++ + L D L + K Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK----- 285 Query: 280 RDQITYVTDRPGHDRRYAIDARKLERELGWKPAETFETGLAKTVDWYLDN 329 + +PG + D + L +G+ P T + G+ V+WY D Sbjct: 286 ----NMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 52.9 bits (127), Expect = 4e-10 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 35/188 (18%) Query: 8 TILLTGINGQVGFELQRTLQGLGN-VVALD-----------RSRL-------------DL 42 L+TG G +GF + + L G+ VV +D ++RL DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 43 SRLNQVRDVVRDLKPDLIVNPAAYTAVDQAETDVAMATRLNAQAPAVLAEEAKRIG-AAL 101 + + D+ + + AV + + N + E + L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 102 IHYSTDYVFAGTKAGPYVEDDAVD-PQNVYGRTKLDGERAIAASGCAHL------IFRTS 154 ++ S+ V+ + P+ DD+VD P ++Y TK E A +HL R Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL--MAHTYSHLYGLPATGLRFF 179 Query: 155 WVYGTRGK 162 VYG G+ Sbjct: 180 TVYGPWGR 187
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 40.0 bits (93), Expect = 8e-05 Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 4/116 (3%) Query: 2141 LVTGGLSGFGLRTAQWLADKGARHLVLVSRSGPASDEAQEAIAALRERGVAVHAAPCDVT 2200 +TG G G A+ LA +GA ++ ++ ++ +++L+ A P DV Sbjct: 12 FITGAAQGIGEAVARTLASQGAH----IAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 2201 DRAALAALLAQVDAQMPPLRGIVHAAMVIDDGLVRGATAAQIERVMAPKIVGALHL 2256 D AA+ + A+++ +M P+ +V+ A V+ GL+ + + E + G + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 28.4 bits (63), Expect = 0.030 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 13/102 (12%) Query: 236 PPAWQFGVAYPLPATLVNHAFTGWGGHATVSWPRRGITLTVAADADAYVLYTPPGADFFC 295 P WQF V A GW G+ + + + + L A Sbjct: 68 PDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGSIAGGKLNLA---FAQGEA 124 Query: 296 FEPVDHPINAVNLPGG---------AAAHGMTLLAPGERLTR 328 + P D+P + + PGG A G+ A GE L Sbjct: 125 WTPGDNP-DVLIFPGGEMTPFRLTLGEAPGIAFNARGESLPE 165
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 117 bits (295), Expect = 5e-34 Identities = 77/249 (30%), Positives = 113/249 (45%), Gaps = 10/249 (4%) Query: 23 RAVLITGGATGIGASFVEHFAQQGARVAFVDLDADAGRALADRLGG-ARHAPLFVPCDLT 81 + ITG A GIG + A QGA +A VD + + + L ARHA F P D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF-PADVR 67 Query: 82 DIEALRRAIDTIRTQIGAIAVLVNNAANDVRHAIADVTPASFDAGIAVNLRHQFFAAQAV 141 D A+ I ++G I +LVN A I ++ ++A +VN F A+++V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 142 IDDMKRLGGGAIINLGSISWMLKNGGYPVYVMAKAAVQGLTRGLARDLGPFGIRVNSLVP 201 M G+I+ +GS + Y +KAA T+ L +L + IR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 202 GWVMTDKQRRLWLDDAGRAAI--------KAGQCLDAELLPADLARMALFLAADDSRMIT 253 G TD Q LW D+ G + K G L P+D+A LFL + + IT Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 254 AQDVIVDGG 262 ++ VDGG Sbjct: 248 MHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 130 bits (328), Expect = 6e-39 Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 6/253 (2%) Query: 5 LAGKVAMVTGAARGIGAAIARAFAGEGARVALVDVDFAQAEQTAAAIARDVDGARVLPLH 64 + GK+A +TGAA+GIG A+AR A +GA +A VD + + E+ +++ + A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA- 64 Query: 65 ADVTQQGSVRDALAQTEAALGALDVLVNNAGINVFADPLTMTDDDWRRCFAVDLDGVWHG 124 DV ++ + A+ E +G +D+LVN AG+ +++D++W F+V+ GV++ Sbjct: 65 -DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 125 CRAALPGMVERGRGSIVNIASTHAFRIIPGCFPYPVAKHGVLGLTRALGIEYAARNVRVN 184 R+ M++R GSIV + S A Y +K + T+ LG+E A N+R N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 185 AIAPGYIETQLTRDWW---DAQPDPAAARAETLALQ-PMKRIGRPEEVAMTAVFLASDEA 240 ++PG ET + W + ET P+K++ +P ++A +FL S +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 241 PFINAACITVDGG 253 I + VDGG Sbjct: 244 GHITMHNLCVDGG 256
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 36.7 bits (85), Expect = 1e-04 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 12/130 (9%) Query: 132 GVVPIINENDTVVTDEIKFGDNDTLGALVANLIEGDALIILTDQSGLFTADPRKDPAATL 191 G VP+I E+ + E D D G +A + D +ILTD +G + Sbjct: 195 GGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLR 253 Query: 192 VAEANAGAPELEAMAGGAGSSLGRGGMLTKILAAKRAAHSGAN-TVIASGREPDVLVRLA 250 + E AGS M K+LAA R G +IA + V Sbjct: 254 EVKVEELRKYYEEGHFKAGS------MGPKVLAAIRFIEWGGERAIIAH---LEKAVEAL 304 Query: 251 GGEAIGTQLI 260 G+ GTQ++ Sbjct: 305 EGKT-GTQVL 313
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 94.2 bits (234), Expect = 4e-24 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 11/112 (9%) Query: 214 FETGSATLTPQGKQILDQMAAALA--KLQNRTVDIIGHTDNSGNRTSNIALSQARADAVK 271 F ATL P+G+ LDQ+ + L+ ++ +V ++G+TD G+ N LS+ RA +V Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 272 GYLITKGIAPQQMTTTGVGPDQPIAPNDTAEGRAR---------NRRIEFRV 314 YLI+KGI +++ G+G P+ N + R +RR+E V Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 31.0 bits (69), Expect = 0.018 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 19/137 (13%) Query: 522 MDPEFRRTISDPVADWKRNMSDADLQRKTTK-SQLDWELQRQGTNMSMLASRSPADQEKL 580 + PE + +S + + SD L++ T +++D R+ L ++ + Sbjct: 285 ISPEHQAILSKRLESVE---SDIRLEQNTMDMTRID---ARKMQMTGDLIMKNSVTVGGI 338 Query: 581 RGMKAASDAAQKRYEQLIAEAPKDYSTVWERLEKEAAKKLLRAPYQEGLRQSAERIRNLP 640 G A Q+R EQ I++ ++ +E+++K S I+ + Sbjct: 339 AGASRQYAATQERSEQQISQVNNRVASTASDEARESSRK------------STSLIQEML 386 Query: 641 ETWDSDNKASAAAVEAL 657 +T +S N++ A+A+ A+ Sbjct: 387 KTMESINQSKASALAAI 403
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.7 bits (90), Expect = 3e-05 Identities = 85/351 (24%), Positives = 123/351 (35%), Gaps = 44/351 (12%) Query: 77 GIAADRFGDRRVLLTGLIATAAMLALMAVAIVPTPDAVPPLAHIVAMMCG-VGLLGGSV- 134 G +DRFG R VLL L A A+MA A V + IVA + G G + G+ Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW---VLYIGRIVAGITGATGAVAGAYI 120 Query: 135 -NGSSGRAVMRWFGERERGLAMSIRQTAVPMGGGVGAALLPWLASHAGFGAVYGTLMLLC 193 + + G R FG A P+ GG+ P HA F + Sbjct: 121 ADITDGDERARHFG--FMSACFGFGMVAGPVLGGLMGGFSP----HAPF--FAAAALNGL 172 Query: 194 AGSAVLTWRWLREPPAAADAAQPHARQPAAPRATTPLANRAV--------WRLVIGIGVL 245 + L E R+P A PLA+ + + + Sbjct: 173 N--FLTGCFLLPES-------HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 246 CVPQFAVLTFATVFLHDFG-RLGVAGISAAMVALQLGAMAMRVWSGRHTDRHRNRRAYLR 304 V Q + F GIS A + L ++A + +G R RRA L Sbjct: 224 LVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI-LHSLAQAMITGPVAARLGERRA-LM 281 Query: 305 GSVLVAGGSFALLAAATAGSPHVPVAAIVAILVFAGICVSAWHGVAYTELATLAGADHAG 364 ++ G + LLA AT G P I+ +L GI + A + L+ + G Sbjct: 282 LGMIADGTGYILLAFATRGWMAFP---IMVLLASGGIGMPALQAM----LSRQVDEERQG 334 Query: 365 TALGMANTMVYVGLFLTPLAIPPLLAAS--TWS-VVWLAAGACACATLPLF 412 G + + + PL + AAS TW+ W+A A LP Sbjct: 335 QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 27.0 bits (59), Expect = 0.010 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Query: 1 MHRVAFVVVLCVAAL-AACSDDAPHDTQAADASQQA 35 M V +++L AAL AACS++A T + DA A Sbjct: 9 MKNVKLLLMLGTAALLAACSNEADSLTTSIDAPVTA 44
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 88.7 bits (220), Expect = 5e-22 Identities = 76/355 (21%), Positives = 127/355 (35%), Gaps = 46/355 (12%) Query: 20 ACVAAAAPVHAQSSVSLYGQVDEWIGATKFPGGDRAWNV-----SGGGMSTSYWGMHGAE 74 A AA PV A + V+LYG + + ++ + A +G S G G E Sbjct: 7 ALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQE 66 Query: 75 DLGGGYKAIFTLESFFRAQNGQYGRFTGDTFFARNAYVGISSPYGTVTAGRLTTHLFLST 134 DLG G KAI+ +E G R +++G+ +G + GRL Sbjct: 67 DLGNGLKAIWQVEQKASIAGTDSGWGN------RQSFIGLKGGFGKLRVGRL-------- 112 Query: 135 ILFNPFYDSYTFSPMVYHVFLGLGTFPTYPSDQGAVGDSGWNNAVSYTSPSFGGLNFGAM 194 + D+ +P ++ A ++ + Y SP F GL+ Sbjct: 113 --NSVLKDTGDINPWD-------SKSDYLGVNKIAEPEARLISV-RYDSPEFAGLSGSVQ 162 Query: 195 YALGNQAGDNGSKKWSAQFNYANGPFAATAVYQYVNFNNGPRDLSALVAGMKSQGIALVG 254 YAL + AG + S+ + A FNY NG F Y + + ++ I + Sbjct: 163 YALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQEN-----VNIEKYQIHRLV 217 Query: 255 ATYDLKYVKLFGQYMYTKNDQVAGSWHVNTAQGGVSVPIG--VGNAMASYAY------SR 306 + YD + + ++ ++ + + +Q V+ + GN +Y S Sbjct: 218 SGYDNDALYAS-VAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSF 276 Query: 307 DGGGLDQTRQTWAVGYDYPLSKRTDIYAAYM---NDHISGLSTGNTFGAGIRAKF 358 D + VG +Y SKRT + G G+R KF Sbjct: 277 DATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 370 bits (950), Expect = e-129 Identities = 160/377 (42%), Positives = 222/377 (58%), Gaps = 19/377 (5%) Query: 16 AAAGLLIAVACALGAPA-AHAERLKDLAQIQGVRDNPLIGYGLVVGLDGTGDQTMQTPFT 74 AAA + A+ PA A R+KD+A +Q RDN LIGYGLVVGL GTGD +PFT Sbjct: 8 AAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFT 67 Query: 75 TQTLANMLANLGISINNGSANGGTSSLNNMQLKNVAAVMVTATLPPFARPGEALDVTVSS 134 Q++ ML NLGI+ G +N KN+AAVMVTA LPPFA PG +DVTVSS Sbjct: 68 EQSMRAMLQNLGITTQGGQSN----------AKNIAAVMVTANLPPFASPGSRVDVTVSS 117 Query: 135 LGNAKSLRGGTLLLTPLKGADGQVYALAQGNMAVGGAGASANGSRVQVNQLAAGRIVGGA 194 LG+A SLRGG L++T L GADGQ+YA+AQG + V G A + + + + R+ GA Sbjct: 118 LGDATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGA 177 Query: 195 IVERSVPNALAQMNGMLQLQLNDMDYGTAQRIVAAVNS----SFGPGVATALDGRTIQLA 250 I+ER +P+ ++ LQL + D+ TA R+ VN+ +G +A D + I + Sbjct: 178 IIERELPSKFKDSVNLV-LQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQ 236 Query: 251 APADPAQQVAFMARLQNLDVSPDKAAARVILNARTGSIVMNQMVTLQSCAVAHGNLSVVV 310 P A MA ++NL V D A+V++N RTG+IV+ V + AV++G L+V V Sbjct: 237 KP-RVADLTRLMAEIENLTVETD-TPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQV 294 Query: 311 NTQPVVSQPGPFSNGQTVVAQQSQIQLKQDNGALKMVTAGANLADVVKALNTLGATPADL 370 P V QP PFS GQT V Q+ I Q+ + + G +L +V LN++G + Sbjct: 295 TESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGI 353 Query: 371 MSILQAMKAAGALRADL 387 ++ILQ +K+AGAL+A+L Sbjct: 354 IAILQGIKSAGALQAEL 370
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 214 bits (545), Expect = 3e-72 Identities = 132/222 (59%), Positives = 161/222 (72%), Gaps = 7/222 (3%) Query: 14 AACALAAAALAGCAQIPREPIVQQPMTAQPPLPVSMQAPGSIF---NPGYAG-RPLFEDQ 69 A +L +L GCA IP P+VQ +AQP + A GSIF P G +PLFED+ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69 Query: 70 RPRNIGDILTIVIAENINATKSSGANTNRQGNTDFNVPTAG-FLGGLF--SKANLSAAGT 126 RPRNIGD LTIV+ EN++A+KSS AN +R G T+F T +L GLF ++A++ A+G Sbjct: 70 RPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGG 129 Query: 127 NKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGVVNPNTI 186 N F GGA+A+NTF+GT+TVTV VL NGNL V GEKQ+ INQG EF+RFSGVVNP TI Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 187 SGSNSVYSTQVADARIEYSAKGYINEAETMGWLQRFFLNIAP 228 SGSN+V STQVADARIEY GYINEA+ MGWLQRFFLN++P Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.8 bits (103), Expect = 4e-07 Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 220 EASNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQMK 261 S VN+ +E N+ + Q+ Y N++ + T++ + + ++ Sbjct: 505 SISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 40.7 bits (95), Expect = 4e-06 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%) Query: 4 SLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTIRQPGANSTQQTELP 63 + A +G+NA QA ++ SNN+++ + G+ RQ + + L Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT--------------RQTTIMAQANSTLG 48 Query: 64 SGLQLGTGVQQVATERLYTQ 83 +G +G GV +R Y Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.031 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 4 LIYTAMTGASQSLDQQAIVANNLANASTTGFRAQ 37 LI AM+G + + +NN+++ + G+ Q Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.7 bits (82), Expect = 3e-04 Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 365 HGTLQGSALENSNVDLTSQLVNLITAQRNYQANAQTIKTQQTVDQTLINL 414 L S V+L + NL Q+ Y ANAQ ++T + LIN+ Sbjct: 496 VTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 31.5 bits (71), Expect = 0.006 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%) Query: 6 GLSGLAGASNALDVIGNNIANANTVGFKSSTA----QFSDMYANSIATSVNTQIGIGTAL 61 +SGL A AL+ NNI++ N G+ T S + A +G G + Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGG-------WVGNGVYV 59 Query: 62 ASVQQQFGQGTINTTNSS 79 + VQ+++ N ++ Sbjct: 60 SGVQREYDAFITNQLRAA 77
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 27.2 bits (60), Expect = 0.026 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKQLMLKTLTI 139 V+ +E N+ + Y AN + L TA + + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 7e-24 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 5 ILLVDDHAIVRQGICQLLVDRGIAREVTEAENGADALAAVDRQTFDVILLDISLPDTNGI 64 IL+ DD A +R + Q L G +V N A + D+++ D+ +PD N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 EVLKRLKRKLPRTPVLMFSMYREDQYAVRALKAGAAGYLSKTVNAAQMIGAIQQ 118 ++L R+K+ P PVL+ S A++A + GA YL K + ++IG I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 61.7 bits (150), Expect = 9e-15 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 9 AAALVYDPKGGDTAPRVVAKGYGALAEMIVARAKDAGLYVHTAPEMV-SLLMQVDLDDRI 67 A ++Y G P V K A + + A++ G+ + + +L +D I Sbjct: 268 AIGILYKR-GETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYI 326 Query: 68 PPQLYQAVADLLAWLYALD 86 P + +A A++L WL + Sbjct: 327 PAEQIEATAEVLRWLERQN 345
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 62.0 bits (150), Expect = 5e-16 Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 9/112 (8%) Query: 3 ANVSGIGSVLQQMQAMAAQASGGVASPAAALAGSGAATAGTFASAMKASLDKISGDQQRA 62 + + GI V+ Q+QA A A + P + +FA + A+LD+IS Q A Sbjct: 1 SAIQGIEGVISQLQATAMSARAQESLPQPTI---------SFAGQLHAALDRISDTQTAA 51 Query: 63 LGEAQAFEVGAANVSLNDVMVDMQKANIGFQFGLQVRNKLVSAYNDIMQMSV 114 +A+ F +G V+LNDVM DMQKA++ Q G+QVRNKLV+AY ++M M V Sbjct: 52 RTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 472 bits (1216), Expect = e-163 Identities = 258/548 (47%), Positives = 356/548 (64%), Gaps = 23/548 (4%) Query: 54 RMKGNPKLPFLIAVAFAVAVVTALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYK 113 R++ NP++P ++A + AVA+V A+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+PY+ Sbjct: 18 RLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYR 77 Query: 114 FADAGGAILVPAAQVHETRLKLAALGLPKGGAVGFELMDNQKFGISQFAEQVNYQRALEG 173 FA+ GAI VPA +VHE RL+LA GLPKGGAVGFEL+D +KFGISQF+EQVNYQRALEG Sbjct: 78 FANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEG 137 Query: 174 ELQRTIESINAVRGARVHLAIPKPSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMV 233 EL RTIE++ V+ ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ A+ +V Sbjct: 138 ELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLV 197 Query: 234 SSGVPDMPAKNVTIVDQDGNLLTQP-ASATGLDASQLKYVQQVERNTQKRIDAILAPIFG 292 SS V +P NVT+VDQ G+LLTQ S L+ +QLK+ VE Q+RI+AIL+PI G Sbjct: 198 SSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVG 257 Query: 293 AGNARSQVSADIDFSKLEQTSESYGPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSN 352 GN +QV+A +DF+ EQT E Y PNG +A +RS+Q + S ++ GVPGALSN Sbjct: 258 NGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSN 317 Query: 353 TPPQPASAPIVA-----GNGANAPQT---------TPVSDRKDQTTNYELDKTIRHVEQP 398 P P API N N PQT P S ++++T+NYE+D+TIRH + Sbjct: 318 QPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMN 377 Query: 399 MGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQIEQLVKDAMGYDAKRGDSVNVMN 458 +G ++RLSVAVVVNY+ +AD K PL ++ QIE L ++AMG+ KRGD++NV+N Sbjct: 378 VGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNVVN 433 Query: 459 SAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEPA 518 S FS + +LP+W+Q I A +WL + A L+ VRP + R + A Sbjct: 434 SPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAA 493 Query: 519 APALALPGEPVVLDGLPAPEPEDESDPALLAFENEKNRYERNLDYARTIARQDPKIVATV 578 + E + + +DE N++ E R ++ DP++VA V Sbjct: 494 QEQAQVRQE--TEEAVEVRLSKDEQLQQRR--ANQRLGAEVMSQRIREMSDNDPRVVALV 549 Query: 579 VKNWVSDE 586 ++ W+S++ Sbjct: 550 IRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 301 bits (772), Expect = e-103 Identities = 114/324 (35%), Positives = 191/324 (58%) Query: 5 GLTKSALLLMSIGEEEAAQVFRFLAPREVQKIGAAMAALKNVTREQVEDVLQEFVKEAEQ 64 G K+A+LL+SIG E +++VF++L+ E++ + +A L+ +T E ++VL EF + Sbjct: 17 GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76 Query: 65 HTALSLDSSEYIRSVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSGAVAELIKNEH 124 + +Y R +L K+LG KA +I+ + + E ++ D + I+ EH Sbjct: 77 QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136 Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVILRIATLDGIQPAALRELDDVLTSLLSGS 184 PQ IA IL +LD +AS I S ++ +V RIA +D P +RE++ VL L+ Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196 Query: 185 DNLKRSPMGGIRTAAEILNFMTSVHEEGVLESVRQYDPDLAQKIVDQMFVFENLLDLEDR 244 + + GG+ EI+N E+ ++ES+ + DP+LA++I +MFVFE+++ L+DR Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256 Query: 245 AIQMVLKEVESETLIVALKGAPPPLRQKFLANMSQRAAELLAEDLDARGPVRVSEVETQQ 304 +IQ VL+E++ + L ALK P+++K NMS+RAA +L ED++ GP R +VE Q Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316 Query: 305 RRILQIVRNLAESGQIVIGGKAED 328 ++I+ ++R L E G+IVI E+ Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 112 bits (280), Expect = 1e-32 Identities = 71/213 (33%), Positives = 116/213 (54%), Gaps = 10/213 (4%) Query: 13 YQRWEMASFDPPPPPPPPDDA------AAAAAALAEELQRVRDAAHAEGHAAGHVEGQAR 66 ++ W PP P A +L ++L +++ AH +G+ AG EG+ + Sbjct: 7 WKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQ 66 Query: 67 GYQAGFEQGRQQGFEAGQAEAREQAAQLAA----LAASFREALASAEHDLAADVAQLALE 122 G++ G+++G QG E G AEA+ Q A + A L + F+ L + + +A+ + Q+ALE Sbjct: 67 GHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALE 126 Query: 123 IAQQVVRQHVKHDPAALVAAVRDVLAAEPALSGAPHLAVNPADLPVVEAYLQDDLDALGW 182 A+QV+ Q D +AL+ ++ +L EP SG P L V+P DL V+ L L GW Sbjct: 127 AARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGW 186 Query: 183 SVRTDASIERGGCRAHAATGEVDATLPTRWQRV 215 +R D ++ GGC+ A G++DA++ TRWQ + Sbjct: 187 RLRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 64.8 bits (157), Expect = 4e-16 Identities = 45/140 (32%), Positives = 74/140 (52%) Query: 1 MAHGFPLQLLLDRAQEDLDDAAKQLGTAQRDRTAAAEQLDALLRYRDEYHARFAQSAQHG 60 MA L L D A+++++DAA+ LG +R A EQL L+ Y++EY G Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MPAGNWRNFQAFIDTLDAAIAQQRSVLAAAELRIDEARPNWQQKKRTVGSYEILQARGVA 120 + + W N+Q FI TL+ AI Q R L ++D A +W++KK+ + +++ LQ R Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 QEAQRAAKREQREADEHAAK 140 + +Q++ DE A + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 65.6 bits (159), Expect = 9e-14 Identities = 62/187 (33%), Positives = 86/187 (45%), Gaps = 14/187 (7%) Query: 231 AQAAAQPASAAQPSAAATQPDAQTAAAATDAAEPNAAATLAAAAATAAAHANLPTPPASA 290 A + +P+ Q A D A A L A A + A + + P+ Sbjct: 148 TDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPV 207 Query: 291 AIAA--------------ANAHVLAPPVGTADWTDALSQKVVFLSNAHQQSAELTLNPPD 336 AA A VL+ P+G+ +W +LSQ + + QQSAEL L+P D Sbjct: 208 TAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQD 267 Query: 337 LGPLQVVLRVADNHAHALFVSQHAQVRDAVEAALPKLRDAMEAGGLGLGSATVSDGGFAS 396 LG +Q+ L+V DN A VS H VR A+EAALP LR + G+ LG + +S F+ Sbjct: 268 LGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSG 327 Query: 397 QQQPQQQ 403 QQQ Q Sbjct: 328 QQQAASQ 334
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.003 Identities = 16/38 (42%), Positives = 20/38 (52%) Query: 28 GNGGGNGGGHGAGGSGGNAGGMSGGHMSGEALSNSNGF 65 G G G GHG GG GN+GG SG + A++ F Sbjct: 53 GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Score = 26.6 bits (58), Expect = 0.026 Identities = 15/45 (33%), Positives = 22/45 (48%) Query: 23 HAAAGGNGGGNGGGHGAGGSGGNAGGMSGGHMSGEALSNSNGFHA 67 + GGG+G G+G G G +GG++S A + GF A Sbjct: 50 SGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPA 94
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.4 bits (118), Expect = 4e-09 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 22/174 (12%) Query: 16 MMAITVAIADDHPVVVSLLVQLFQADPSFHVEHCCNEGSALIESLARVPTDIVIVDYSMS 75 M T+ +ADD + ++L Q + V + + L +A D+V+ D M Sbjct: 1 MTGATILVADDDAAIRTVLNQALS-RAGYDV-RITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 76 RGDRPVDGFALLRKLREVAPKAGRVLFTMQRNPTVFAAAMRLGVAAIVSK----EDEVAE 131 + F LL ++++ P ++ + Q A G + K + + Sbjct: 59 DEN----AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 132 LLRACRYIQ----------DGGACYL--SPTVRTIVDQAGTVLRDNAPPLTQKE 173 + RA + G + S ++ I +++ + + E Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 57.9 bits (140), Expect = 2e-11 Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 40/251 (15%) Query: 2 LKRKTLTLSVAAAGLCAATGAYAQSSVQLYGLMDLSFPTYRTHADANGKHVIGMGNDGEP 61 +K+ + L++AA L A A + V LYG + T R+ A + G Sbjct: 1 MKKSLIALTLAA--LPVA----AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIV 54 Query: 62 WFSGSRWGLKGAEDIGGGTKIIFRLESEYVVANGQMEDEGQIFDRDAWVGVEDERFGKLT 121 GS+ G KG ED+G G K I+++E + +A + +R +++G++ FGKL Sbjct: 55 DL-GSKIGFKGQEDLGNGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLKGG-FGKLR 108 Query: 122 AGFQNTIARDAAAIYGDAYGAAKLSTEEGG--WTNSNNFKQMIFYAAGPTGTRYNNGIAW 179 G N++ +D GD S G RY++ Sbjct: 109 VGRLNSVLKD----TGDINPWDSKSDYLGVNKIAEPEAR---------LISVRYDSPE-- 153 Query: 180 KKLFSNGIFASAGYQFSNSTAFATGSAYQAALGYNGGPFNVSGFYSHVNH-------GGF 232 F+ G+ S Y +++ +Y A Y G F V ++ H Sbjct: 154 ---FA-GLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIE 209 Query: 233 RNQTFSVGGNY 243 + Q + Y Sbjct: 210 KYQIHRLVSGY 220
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 1e-24 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 1/126 (0%) Query: 2 KLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKE 61 +L+ +D+A + + L + V + + D V+ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARI-RALIRRQA 120 +L R+++ ++PVL+++A + + GA DY+ KPF+ EL+ I RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GVGSTQ 126 + Sbjct: 125 RPSKLE 130
>PF06580#Sensor histidine kinase Length = 349 Score = 53.3 bits (128), Expect = 7e-10 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 40/164 (24%) Query: 316 VSSVLEETIVLAQRRDIDLGAEL--------------GERLDV--AGSGSLLSALVTN-- 357 +S ++ ++ + R + L EL +RL + +++ V Sbjct: 200 LSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPML 259 Query: 358 ---LVDNAVRY----TQPGGCVTVAARRDGDTVVLDVIDDGPGIPAEARPHVFKRFYRVS 410 LV+N +++ GG + + +D TV L+V + G + Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK----------- 308 Query: 411 SDTEGSGLGLAIVSE-IAQAHGGSATLAPGPGNRGVVVTVRLPA 453 E +G GL V E + +G A + V V +P Sbjct: 309 ---ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 161 bits (408), Expect = 8e-51 Identities = 112/251 (44%), Positives = 161/251 (64%), Gaps = 1/251 (0%) Query: 1 MFSVTYAQLNGWLTAFLWPFVRMLALVATAPVVGHASVPARVKIGVAAFMALIVAPTLGP 60 M VT Q WL + WP +R+LAL++TAP++ SVP RVK+G+A + +AP+L P Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSL-P 59 Query: 61 MPAVTVFSAEGIWIVVTQFLIGTAMGFTMQIVFAAVEAAGDFIGLSMGLGFATFFDPHSS 120 V VFS +W+ V Q LIG A+GFTMQ FAAV AG+ IGL MGL FATF DP S Sbjct: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 GATPVMGRFLNAVAMLAFLAVDGHLQVLAALTASFQSLPVSADLLHAPGWRTLATFGATV 180 PV+ R ++ +A+L FL +GHL +++ L +F +LP+ + L++ + L G+ + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 181 FGMGLLLALPVVAALLIANLALGILNRAAPQIGVFQVGFPVTMLVGLLLVQLMVPNLVPF 240 F GL+LALP++ LL NLALG+LNR APQ+ +F +GFP+T+ VG+ L+ ++P + PF Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 241 VSRLFDMGLDA 251 LF + Sbjct: 240 CEHLFSEIFNL 250
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 65.2 bits (159), Expect = 9e-18 Identities = 28/85 (32%), Positives = 44/85 (51%) Query: 4 EQVMTLAHQAMMVGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAATLV 63 + ++ ++A+ + L+L+ +VA +GL+V LFQ TQ+ E TL F KLL V L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLTTMLDYLRQTLLHVATLG 88 + W +L Y RQ + G Sbjct: 62 LLSGWYGEVLLSYGRQVIFLALAKG 86
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 289 bits (741), Expect = e-101 Identities = 153/247 (61%), Positives = 197/247 (79%), Gaps = 4/247 (1%) Query: 6 LRRAARIVPALLLGLAPALACAQAAGLPAFNASPGPNGGTTYSLSVQTMLLLTMLSFLPA 65 +RR + P LL + P A LP + P P GG ++SL VQT++ +T L+F+PA Sbjct: 1 MRRLLSVAPVLLWLITPLAF----AQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPA 56 Query: 66 MVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVMSPVLDRAYTDGYKPF 125 ++LMMTSFTRIIIV LLR ALGT + PPNQVL+GLALFLTFF+MSPV+D+ Y D Y+PF Sbjct: 57 ILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPF 116 Query: 126 SDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAAPMQGPEDVPLSLLVPAFVT 185 S+ + M++A+++G P + FML+QTRE DL LFA+++ P+QGPE VP+ +L+PA+VT Sbjct: 117 SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVT 176 Query: 186 SELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLI 245 SELKT FQIGFTIFIPFLIID+V+ASVLM++GMMMV P+T++LPFKLMLFVLVDGWQLL+ Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 246 GSLAQSF 252 GSLAQSF Sbjct: 237 GSLAQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 139 bits (352), Expect = 2e-45 Identities = 77/132 (58%), Positives = 99/132 (75%), Gaps = 3/132 (2%) Query: 29 AADADPAMDD-WAAALAEQNHQPVQAGATGAGVFQPLSKAAASSTHNDIEMILDIPVKMT 87 + + A+DD WA AL EQ ++ A VFQ L S DI++I+DIPVK+T Sbjct: 8 SDENTGALDDLWADALNEQKATTTKSAADA--VFQQLGGGDVSGAMQDIDLIMDIPVKLT 65 Query: 88 VELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDI 147 VELGRT++ I+ LL+L QGSVV LDGLAGEP+D+L+NG LIAQGEVVVV DK+G+R+TDI Sbjct: 66 VELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125 Query: 148 ITPSERIRKLNR 159 ITPSER+R+L+R Sbjct: 126 ITPSERMRRLSR 137
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 271 bits (694), Expect = 9e-92 Identities = 81/324 (25%), Positives = 159/324 (49%), Gaps = 10/324 (3%) Query: 5 EFMSQEEVDALLKGV-TGESDTVD--EERDTAGVRPYNIATQERIVRGRMPGLEIINDRF 61 E +SQ+E+D LL + +G++ D DT + Y+ ++ + +M L ++++ F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121 ARL + +R + V+ V Y EF R++P P+ L ++ + PL+G ++ DP+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEFVR 181 + F ++D LFGG G+ RD T E ++ ++ + + +W V L+ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239 E + QFA + P+E+V++ + G G ++ C+PY IEPI LSS ++ Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 240 EVDRRWVRVLSQQVQAAEVELTADLAEIPTTFEKILNLRAGDVLPLD---IADTITAKVD 296 +++ VL ++ ++++ A++ + + IL LR GD++ L + D + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 297 GVPVMECGYGIFNGQYALRVQKMI 320 C G+ + A ++ + I Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 37.6 bits (87), Expect = 1e-05 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 17 RASRARGFTLIELMIAIAILAVVAVLAWRGLDQIMRGRDK--VASAMEDERVFAQMFDQM 74 + RGFTL+E+M+ I I+ V+A L + +M ++K A+ D D Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLV---VPNLMGNKEKADKQKAVSDIVALENALDMY 59 Query: 75 RID 77 ++D Sbjct: 60 KLD 62
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.5 bits (66), Expect = 0.003 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Query: 25 RGFTMIEVLVALAIIAVALAASIRAVGTMATGASELHRRLLAGWSADNALAQLRLAHAWP 84 RGFT++E+++ L ++ V+ + +A AS R A + AQLR Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVL-----LAFPAS---RDDSAAQTLARFEAQLRFVQQRG 55 Query: 85 QIGEQNF 91 Q F Sbjct: 56 LQTGQFF 62
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 47.2 bits (112), Expect = 5e-09 Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 64 RGFTLLEMLVVLVIAGLLVSLASLSLTRNPRTDLREEAQRLALLFETAGDEAQVRARPIA 123 RGFTLLEM+++L++ G+ + L+ + + R + Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFG 63 Query: 124 WQPTAHGFRF 133 ++F Sbjct: 64 VSVHPDRWQF 73
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 190 bits (485), Expect = 1e-65 Identities = 65/139 (46%), Positives = 92/139 (66%), Gaps = 3/139 (2%) Query: 11 AVRRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRLD 70 A +QRGFTL+EIMVV+ I+G+LA+L+VP +M ++A + A DI + AL +Y+LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 71 NGRYPTQEQGLNALIQKPSTDPIPNNWKDGGYLERLPNDPWGNPYKYLNPGVHGEIDVFS 130 N YPT QGL +L++ P+ P+ N+ GY++RLP DPWGN Y +NPG HG D+ S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 131 YGADGKEGGDGNDTDIGSW 149 G DG+ G + DI +W Sbjct: 123 AGPDGEMGTED---DITNW 138
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 377 bits (970), Expect = e-131 Identities = 174/406 (42%), Positives = 263/406 (64%), Gaps = 2/406 (0%) Query: 1 MPAFRFEAIDAAGRTQKGVVDADSARAARGQLRTQGLTPLVVEPAGSATRGARSQRLALG 60 M + ++A+DA G+ +G +ADSAR AR LR +GL PL V+ + + S L+L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R--KLSQREQAILTRQLASLLIAGLPLDEALGVLTEQSERDYIRELMAAIRAEVLGGHSL 118 R +LS + A+LTRQLA+L+ A +PL+EAL + +QSE+ ++ +LMAA+R++V+ GHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ANALSQHPRDFPEIYRALVSAGEHTGKLGIVLSRLADYIEQRNALKQKILLAFTYPAIVT 178 A+A+ P F +Y A+V+AGE +G L VL+RLADY EQR ++ +I A YP ++T Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VIAFGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSGFVRHWWWAILIAVALVVWF 238 V+A +V+ LLS VVP+VV F KQ LPL T V+M +S VR + +L+A+ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VKATLSRAGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGET 298 + L + R++F R LL PL G++ RG NT R+A TL IL A+ VP+L+A++ +G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNRAMRANIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAADG 358 +SN R + A VREG +L +AL FPP++ H+I SGE +G++ +ML+RAAD Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 EARELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404 + RE + L EPLL+++M +VL IVLA++ PI++LN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 398 bits (1025), Expect = e-131 Identities = 204/694 (29%), Positives = 324/694 (46%), Gaps = 88/694 (12%) Query: 13 TTLIIAGIIGSQAAYAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERSV 72 T LI A ++ AA + + +F DI + + KT+I+DP V+G + + + + Sbjct: 13 TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 73 PEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYVGNVPRARGDQVITQV 131 E+Q + S L + GFA++ ++GVLKVV DAK VP + GD+V+T+V Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPV-ASDAAPGIGDEVVTRV 131 Query: 132 FELHNESANNLLPVLRPLI--SPNNTVTAYPANNSIVVTDYADNVRRIAQIIAGVDSAAG 189 L N +A +L P+LR L + +V Y +N +++T A ++R+ I+ VD+A Sbjct: 132 VPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGD 191 Query: 190 AQVQVVPLRNANAIDLASQLQKMLDPGAIGNSDATLKVSVTADPRTNSLLLRASNASRLA 249 V VPL A+A D+ + ++ + ++ +V AD RTN++L+ SR Sbjct: 192 RSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR-Q 250 Query: 250 AAKRLVQQLDAPSAVPGNMHVVPLRNADAVKLAKTLRGMLGKGGNDTGSSASSNDANSFN 309 +++QLD A GN V+ L+ A A L + L G+ Sbjct: 251 RIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGI--------------------- 289 Query: 310 QNGSSSSGNFSTGTAGTPPLPSGGLGGTSSSSSYGGTSSSGGLGNAGLLGGDKDKNDDNQ 369 S S L + Sbjct: 290 --------------------------------SSTMQSEKQAAKPVAALDKN-------- 309 Query: 370 PGGMIQADAATNSLIITASDPVYRNLRAVIDQLDKRRAQVYIEALIVELNSTTAGQLGIQ 429 +I+A TN+LI+TA+ V +L VI QLD RR QV +EA+I E+ LGIQ Sbjct: 310 --IIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQ 367 Query: 430 WQVASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIG 489 W + + TN + + G+V+SS +A + Sbjct: 368 WANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALS--------------SFN 413 Query: 490 WLHNMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTS 549 + F LL + + ++L+TP+++TLDN EA VG+ VP+ TGS + Sbjct: 414 GIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGS----QT 469 Query: 550 GTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAV--DTATTNSQTGPSFTKR 607 + N FNT +R+ VG+ L VKPQI +G + L++ E S+V ++T+S G +F R Sbjct: 470 TSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTR 529 Query: 608 SIQSTILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFL 667 ++ + +L +GE +V+GGL+ + + + KVPLLGDIP IG LFRS SK+ K NLM+F+ Sbjct: 530 TVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFI 589 Query: 668 RPVIIADRDTAQAVTSNRYDYIQGVTGAYKSDNN 701 RP +I DRD + +S +Y + N Sbjct: 590 RPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKEN 623
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 108 bits (271), Expect = 1e-34 Identities = 45/88 (51%), Positives = 58/88 (65%) Query: 2 NKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAARTGR 61 NKQ+LI VA T +K + +D + + ++KG+ VQLIGFG+F +RAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGETIKIPAAKTVKFTAGKAFKDAV 89 NP+TGE IKI A+K F AGKA KDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 26.0 bits (57), Expect = 0.029 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 8/86 (9%) Query: 3 QYAKLKAQIAELQAQADEVRR-----QEVEAVI--ADIRRLIDEYGLTAQDLGFAERARR 55 +Y KLK Q + V I AD I+E + G+ + + Sbjct: 389 KYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKI 448 Query: 56 GRPPKKAPLPP-KYRDPKTGATWSGR 80 + K P + + G+ Sbjct: 449 YKSKKSKTSKPMHFISKDGIDIYVGK 474
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 38.0 bits (88), Expect = 4e-05 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 182 FAMSSDHVEPYMRDILREIGKTLNDV---PNRIIVQGHTDAVPYAGGEGGYSNWELSADR 238 F + ++P + L ++ L+++ ++V G+TD + G Y N LS R Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI----GSDAY-NQGLSERR 277 Query: 239 ANASRRELIAGGMDEAKVLRV-LGLASTQNLNKADPLDPENRRISVIVLNRKSE 291 A + LI+ G+ K+ +G ++ N D + I + +R+ E Sbjct: 278 AQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.2 bits (203), Expect = 1e-21 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 TILAIDDSATMRALLHATLAQAGYEVTVAADGEAGFDLAATTAYDLVLTDQNMPRKSGLE 63 TIL DD A +R +L+ L++AGY+V + ++ + A DLV+TD MP ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LIAALRQLSAYADTPILVLTTEGSDAFKAAARDAGATGWIEKPIDPGVLVELVATLSEP 122 L+ ++ A D P+LV++ + + A + GA ++ KP D L+ ++ Sbjct: 65 LLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 46.4 bits (110), Expect = 3e-07 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 52/151 (34%) Query: 463 ELDKSLIERIIDPLT--HLVRNSLDHGIETVDKRIAAGKDAVGQLVLSAAHHGGNIVIEV 520 +++ ++++ + P+ LV N + HGI G+++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 521 SDDGAGLNRERILAKAAKQGMQIPENISDDEVWQLIFAPGFSTAETVTDVSGRGVGMDVV 580 + G+ + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 581 KRNIQSMGG---HVEISSQAGRGTTTRIVLP 608 + +Q + G +++S + G +++P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.5 bits (68), Expect = 0.020 Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 14/197 (7%) Query: 296 EQAASLQETASSMEQLTGTVRQNAENARQASQLAVNASDIATQGGEVVGQVVSTMQDIAA 355 +Q + + ++ ++T V E R++S V ++D A + VG + S M D+A Sbjct: 51 DQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESND-AGVVKKFVGSM-SLMSDVAK 108 Query: 356 SS---GKIVDIIGTIEGIAFQTNILALNAAVEAARAGEQGRGFAV-VAGEVRSLAQRSAT 411 + + I+ G+ + N VE ++ Q AV VAGE L ++ Sbjct: 109 GTVVASQEATIVAKCSGMVAE----GANKVVEMSKKAVQETQKAVSVAGEATFLIEKQIM 164 Query: 412 AAKEIK----QLIGDSAAKVDSGSALVARAGSTMDEIVQAVRRVTDIMGEISAASDEQST 467 K +L + AKV+ + + +DE VQ ++V +++ ++ ++ +Q Sbjct: 165 LNKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224 Query: 468 GIEQVNRAVGQMDAVTQ 484 + V +A+ + V Q Sbjct: 225 AKKDVAKAISNVVKVAQ 241
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.9 bits (166), Expect = 1e-14 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 13/149 (8%) Query: 5 QKIKVLCVDDSALIRSLMTEIINGQPDMMVCATAPDPLVARELIKQHNPDVLTLDVEMPR 64 +L DD A IR+++ + ++ + I + D++ DV MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 65 MDGLDFLEKLMRLRP-MPVVMVSSLTERGSEITLRALELGAVDFVTKPRVGIRDGMLDYA 123 + D L ++ + RP +PV+++S+ ++A E GA D++ KP D Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP--------FDLT 109 Query: 124 EKLADKIRAASRARVRQTPQPQAAARAAG 152 E + RA + + R + + Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMP 138
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 9e-24 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 1 MDKSMKILVVDDFPTMRRIVRNLLKELGYTNVDEAEDGAAGLARLRGGGFDFVISDWNMP 60 M + ILV DD +R ++ L GY V + A + G D V++D MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 NLDGLAMLKEIRADASLAHLPVLMVTAESKKENIIAAAQAGASGYVVKPF 110 + + +L I+ LPVL+++A++ I A++ GA Y+ KPF Sbjct: 59 DENAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>cloacin#Cloacin signature. Length = 551 Score = 36.6 bits (84), Expect = 2e-04 Identities = 17/43 (39%), Positives = 19/43 (44%) Query: 30 GDGDGGGSAAGGGSSTGGGSTGGSGGTGGSGSGGGTANTANTA 72 G G G G GGGS G G G+ G G G +A A A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 35.5 bits (81), Expect = 4e-04 Identities = 15/39 (38%), Positives = 18/39 (46%) Query: 28 GGGDGDGGGSAAGGGSSTGGGSTGGSGGTGGSGSGGGTA 66 GGG G G G G GGG+ GG+G G+ A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 35.1 bits (80), Expect = 5e-04 Identities = 15/42 (35%), Positives = 20/42 (47%) Query: 32 GDGGGSAAGGGSSTGGGSTGGSGGTGGSGSGGGTANTANTAV 73 G G GS G +G G+ GG+G +GG GG + V Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPV 88 Score = 34.3 bits (78), Expect = 0.001 Identities = 15/39 (38%), Positives = 20/39 (51%) Query: 28 GGGDGDGGGSAAGGGSSTGGGSTGGSGGTGGSGSGGGTA 66 G G G G +G G+ G G++GG GTGG+ S Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 33.1 bits (75), Expect = 0.002 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 6/49 (12%) Query: 28 GGGDGDGGGSAAGGGSST------GGGSTGGSGGTGGSGSGGGTANTAN 70 G GG S G SS G GS GG G G+GGG N+ Sbjct: 25 TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGG 73 Score = 32.0 bits (72), Expect = 0.005 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 25 VACGGGDGDGGGSAA---GGGSSTGGGSTGGSGGTGGSGSGGGTANTANTAVITVNSGVA 81 V G DG G S GGGS +G GGSG G G G + + T Sbjct: 29 VGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH-GNGGGNGNSGGGSGTGGNLSAVAAP 87 Query: 82 SVINIPTVS 90 P +S Sbjct: 88 VAFGFPALS 96 Score = 31.6 bits (71), Expect = 0.007 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Query: 32 GDGGGSAAGGGSSTG---GGSTGGSGGTGGS-GSGGGTANTAN 70 GDG G G S++G GG TG G G S GSG + N Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPW 46 Score = 30.8 bits (69), Expect = 0.011 Identities = 15/42 (35%), Positives = 19/42 (45%) Query: 29 GGDGDGGGSAAGGGSSTGGGSTGGSGGTGGSGSGGGTANTAN 70 GGDG G + A S G G G GG+ G G ++ N Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENN 44
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 359 bits (924), Expect = e-125 Identities = 104/351 (29%), Positives = 178/351 (50%), Gaps = 6/351 (1%) Query: 1 MADESDLDRTEAATPRRREKAREEGQVARSRELASFALLAAGFYGAWLLAAPSGAHLQAM 60 M+ E +TE TP++ AR++GQVA+S+E+ S AL+ A L+ H + Sbjct: 1 MSGE----KTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKL 56 Query: 61 LRGAFAFDRATAFDTHRMLSAAGSASLEGLAALLPILALTGAAALLAPMALGGWLISPKT 120 + +++ + + + LE P+L + A+ + + G+LIS + Sbjct: 57 M--LIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEA 114 Query: 121 FELKFDRLNPVAGLGRIFSIQGPIQLGMSIAKTLVVGGIGGVAIWRSKDELLGLATQPLD 180 + ++NP+ G RIFSI+ ++ SI K +++ + + I + LL L T ++ Sbjct: 115 IKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIE 174 Query: 181 TALVDALHLVAVCCGTTVAGMLVVAALDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHV 240 ++ G +V++ D ++ +QY K+L+M+K+E+KRE++E EG P + Sbjct: 175 CITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEI 234 Query: 241 KGRIRQQQRAIARRRMMAAVPKADVVVTNPTHFAVALQYADGEMRAPKVVAKGVNLVAAR 300 K + RQ + I R M V ++ VVV NPTH A+ + Y GE P V K + Sbjct: 235 KSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQT 294 Query: 301 IRELAAEHNVPLLEAPPLARALYHNVELEREIPGALYSAVAEVLAWVYQLK 351 +R++A E VP+L+ PLARALY + ++ IP A AEVL W+ + Sbjct: 295 VRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.9 bits (119), Expect = 1e-08 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 10/148 (6%) Query: 31 DFMIYSFLIPTLIATWGMTKSEAGMIATSSLISSAIGGWVAGILADRYGRVRVLQWTIAT 90 + M+ + +P + + + + T+ +++ +IG V G L+D+ G R+L + I Sbjct: 29 NEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIII 88 Query: 91 FALFTCLSGFTHSFWQLL-ATRTLQGFGFGGEWSVVTIMMAETIRSPEHRAKAVGTVQSS 149 + + HSF+ LL R +QG G ++V +++A I E+R KA G + S Sbjct: 89 NCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI-PKENRGKAFGLIGSI 147 Query: 150 WSF--------GWAAAAILYWAFFALLP 169 + G A ++W++ L+P Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIP 175
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 2e-27 Identities = 76/258 (29%), Positives = 106/258 (41%), Gaps = 16/258 (6%) Query: 7 RIALITGAGSGIGAALARRLAAPGVALALHARGADDASRTRLADVVHACTASGAQCIALT 66 +IA ITGA GIG A+AR LA+ G +A A D + +L VV + A A Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIA-----AVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 67 GDLADPGVAARLVDATAAQFGGLDHLVANAGFAARQSLSDLSADALASAFAAMPGAFATL 126 D+ D + + G +D LV AG + LS + + F+ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 127 ASRARPLLEASAAARIVAVSSFVAHRYRADTPFAATAAAKAALESLVRSAAAEFAPAAIT 186 + + + IV V S A R T AA A++KAA + E A I Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPR--TSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 187 VNAVAPGFTRKD---------RGPSADNAGAWAHAAHATPLGRIAEPDDVAALIAFLLSD 237 N V+PG T D G G+ PL ++A+P D+A + FL+S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 238 AARQITGQVVHVDGGLTL 255 A IT + VDGG TL Sbjct: 242 QAGHITMHNLCVDGGATL 259
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 0.002 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Query: 409 EPGSRW----LVVGKSGSGKSTFMRALAGLWPFGDGAIDAPVG 447 EPG ++ ++ G G GKST + L GL F D D G Sbjct: 590 EPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 24.3 bits (53), Expect = 0.038 Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 1 MDIQINQQTLTLPDGATVADALAAYGAR 28 D+Q+ T TL + V D +AA R Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGR 268
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 73.9 bits (181), Expect = 2e-16 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 26/157 (16%) Query: 125 LGSGFIISPDGYILTNAHVIDGANVVTVKLTDKR-----------EYKA-KVVGSDKQSD 172 + SG ++ D +LTN HV+D + L + A ++ + D Sbjct: 103 IASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGD 161 Query: 173 VAVLKIDAT--------GLPTVKIGDPAQSKVGQWVVAIGSPYGFDNTVTSGIISAKSRA 224 +A++K + + + A+++V Q + G P +K + Sbjct: 162 LAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKI 218 Query: 225 LPDENYTPFIQTDVPVNPGNSGGPLFNLQGEVIGINS 261 + +Q D+ GNSG P+FN + EVIGI+ Sbjct: 219 TYLKGE--AMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 114 bits (286), Expect = 3e-33 Identities = 77/208 (37%), Positives = 113/208 (54%) Query: 50 MVRRTKEEALETRNRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFANKSDLFD 109 M R+TK+EA ETR ILD A +F ++GVS TSL +IA+ AGVTRGAIYWHF +KSDLF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 110 AMFDRVLLPIDELKRMPADAPGSNPLEKVRKILIWCLLGVQRDSQLRRVFSILFMKCEYV 169 +++ I EL+ +PL +R+ILI L + + R + I+F KCE+V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 170 ADMEPLLLRNRAGMSEALHAIDADLAMAVRLELLPERLDTWRATLMLHTLVSGFVRDMLM 229 +M + R E+ I+ L + ++LP L T RA +++ +SG + + L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 230 LPDEIDAEKHAEKLVDGCFDMLRCSPAM 257 P D +K A V +M P + Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTL 208
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.0 bits (109), Expect = 2e-07 Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 25/250 (10%) Query: 61 LVAQVRARVDGIVLRREFTEGSDVKAGQRLYKIDPAPYIAALNSAKATLAKAQANLATQN 120 ++A++ + + + + L A L + +A L Sbjct: 219 VLARINRYENLSRVEKS-----RLDDFSSLLHKQAIAKHAVLE-QENKYVEAVNELRVYK 272 Query: 121 ALVARYKVLVAANAVS----KQDYDNAVAAQ-GQAAADVAAGKASVETAQINLGYTDVVS 175 + + + + + + Q + N + + Q ++ + + + + + Sbjct: 273 SQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRA 332 Query: 176 PITGRV-GISQVTPGAYVQASQATLMSTVQQLDPVYVD-LTQSSL-----EGLKLRQDVQ 228 P++ +V + T G V ++ TLM V + D + V L Q+ G V+ Sbjct: 333 PVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 229 SGRLKTTGPGAAKVSLILEDGRTYSQPGKLQFSDVTVDQTTGSVTIRAVFPNPGKVLLPG 288 + G KV I D + G + +++++ S N L G Sbjct: 392 AFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLST------GNKNIPLSSG 445 Query: 289 MFVRARIEEG 298 M V A I+ G Sbjct: 446 MAVTAEIKTG 455 Score = 29.8 bits (67), Expect = 0.023 Identities = 15/101 (14%), Positives = 32/101 (31%) Query: 65 VRARVDGIVLRREFTEGSDVKAGQRLYKIDPAPYIAALNSAKATLAKAQANLATQNALVA 124 ++ + IV EG V+ G L K+ A +++L +A+ L Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 125 RYKVLVAANAVSKQDYDNAVAAQGQAAADVAAGKASVETAQ 165 ++ + ++ + + K T Q Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1267 bits (3280), Expect = 0.0 Identities = 678/1035 (65%), Positives = 823/1035 (79%), Gaps = 2/1035 (0%) Query: 1 MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPIAQYPTIAPPSIQISANYPGASAKTVEDT 60 MA FFI RPIFAWV+AIILM+AG AI LP+AQYPTIAPP++ +SANYPGA A+TV+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMSGLDNFLYMSSTSDDSGTATITLTFAPGTNPDIAQVQVQNKLSLATPILPQ 120 VTQVIEQ M+G+DN +YMSSTSD +G+ TITLTF GT+PDIAQVQVQNKL LATP+LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 VVQQLGLKVTKSSSSFLLVLAFNSEDGSMNRYDLANYVASHVQDPISRLNGVGTVTLFGS 180 VQQ G+ V KSSSS+L+V F S++ + D+++YVAS+V+D +SRLNGVG V LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRVWLDPVKLTNYGLTPIDVTNAISAQNVQVAGGQIGGTPAKPGTLLQATITEATLL 240 QYAMR+WLD L Y LTP+DV N + QN Q+A GQ+GGTPA PG L A+I T Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 RTPAEFGNILLKVNQDGSQVRLKDVAQIGLGAENYNFDTKYNGQPSAALGIQLATNANAL 300 + P EFG + L+VN DGS VRLKDVA++ LG ENYN + NG+P+A LGI+LAT ANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATAKAVRAKVDELSKYFPHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQ 360 TAKA++AK+ EL +FP G+ V YPYDTTPFV+LSI EVVKTL E I+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENVERVM 420 N+RAT+IPTIAVPVVLLGTFAI++ G+SINTL+MFG+VLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLGPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVL 480 E+ L PKEAT K+M QI GALVG+A+VLSAVF+P+AF GGS GAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNASRDKYHVGVHHVIKRSGRW 540 SVLVALILTPALCAT+LKP+ HHE K GFFGWFN TF+ S + Y V ++ +GR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LIIYLVVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKTLANITDYLLKD 600 L+IY +++ + +LF+RLP SFLP+EDQG+ ++Q P+G+TQE T K L +TDY LK+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHADQKVQALIGRMFGRYSGYKDA 660 EK VES FTVNGFSF+G+ QN+G+ FV LK + +R + +A+I R +D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 IVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKDP-TLQGVRPNGL 719 VIPFN P+I ELGTA GFDFEL D AGLGHDAL ARNQLLGMAA+ P +L VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 NDTPQYKVDIDREKANALGVTADAIDQTFSIAWASKYVNNFLDTDGRIKKVYVQSDAPFR 779 DT Q+K+++D+EKA ALGV+ I+QT S A YVN+F+D GR+KK+YVQ+DA FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFR 779 Query: 780 MTPEDLNIWYVRNGSGGMVPFGAFATGHWTYGSPKLERYNGISAMEIQGQAAPGKSTGQA 839 M PED++ YVR+ +G MVPF AF T HW YGSP+LERYNG+ +MEIQG+AAPG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MAAMEALATKLPTGIGYSWTGLSFQEIQSGSQAPILYAISILVVFLCLAALYESWSIPFS 899 MA ME LA+KLP GIGY WTG+S+QE SG+QAP L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQMTEKMGP 959 V++VVPLG++G LLAATL +NDV+F VGLLTT+GLSAKNAILIVEFA++L E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 960 IEAALEAARLRLRPILMTSLAFILGVLPLAISNGAGSASQHAIGTGVIGGMITATFLAIF 1019 +EA L A R+RLRPILMTSLAFILGVLPLAISNGAGS +Q+A+G GV+GGM++AT LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1020 MIPMFFVKIRAIFSG 1034 +P+FFV IR F G Sbjct: 1020 FVPVFFVVIRRCFKG 1034 Score = 73.7 bits (181), Expect = 3e-15 Identities = 53/324 (16%), Positives = 113/324 (34%), Gaps = 15/324 (4%) Query: 724 QYKVDIDREKANALGVTADAIDQTFS---IAWASKYVNNFLDTDGRIKKVYVQSDAPFRM 780 ++ +D + N +T + A+ + G+ + + F+ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK- 241 Query: 781 TPEDL-NIWYVRNGSGGMVPFGAFATGHWTYGSPKLE---RYNGISAMEIQGQAAPGKST 836 PE+ + N G +V A G R NG A + + A G + Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARV--ELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 837 ----GQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGSQAPILYAI-SILVVFLCLAALY 891 A + L P G+ + + +Q + +I++VFL + Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 892 ESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFAREL 951 ++ + VP+ ++G G + G++ +GL +AI++VE + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 952 QMTEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAISNGAGSASQHAIGTGVIGGMI 1011 M +K+ P EA ++ ++ ++ +P+A G+ A ++ M Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 1012 TATFLAIFMIPMFFVKIRAIFSGE 1035 + +A+ + P + S E Sbjct: 480 LSVLVALILTPALCATLLKPVSAE 503
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.006 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 2 TPNPHALALDRVTLELGGRTILRDVSFSIEPG---EFVGVL-GPNGAGKTTLMRAVLGL 56 TP+ + R +G ++ V+ +EPG ++ VL G G GK+TL+ ++GL Sbjct: 561 TPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 129 bits (325), Expect = 3e-37 Identities = 71/301 (23%), Positives = 124/301 (41%), Gaps = 32/301 (10%) Query: 32 VAALSLAAPALAQAAPVNVVAAENFYGDVVTQIGGSHVAVTSILSNPDQDPHLFEASPKT 91 + A + + VVA + D+ I G + + SI+ QDPH +E P+ Sbjct: 17 LVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVP-IGQDPHEYEPLPED 75 Query: 92 ARALQHAQLVIYNG----AAYDPWMGKLLGASKQAKRA-TIVVADLVGK--------KAG 138 + A L+ YNG + W KL+ +K+ + V+D V K Sbjct: 76 VKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGK 135 Query: 139 DNPHLWYDPATMPAAARAIATELGRADPANKADYDANLQKFIASLKSVDD----KVAALR 194 ++PH W + A+ IA +L DP NK Y+ NL+++ L +D K + Sbjct: 136 EDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIP 195 Query: 195 AQYKGVPVTATEPVFGYMADAIGLEMRNQRFQLATMNDTEASAQDVAAFEKDLRDKRVRV 254 A+ K + VT +E F Y + A G+ + + E + + + + LR +V Sbjct: 196 AEKKLI-VT-SEGAFKYFSKAYGVP---SAYIWEINTEEEGTPEQIKTLVEKLRQTKVPS 250 Query: 255 LIYNSQAEEAMTKRMLKIAHDSGLP------TVSVTETQPAGKTFQQWMAAQLDALGHAL 308 L S ++ + M ++ D+ +P T S+ E G ++ M LD + L Sbjct: 251 LFVESSVDD---RPMKTVSQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGL 307 Query: 309 S 309 + Sbjct: 308 A 308
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (324), Expect = 2e-38 Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 15/259 (5%) Query: 3 LEEKVAILTGAASGIGEAVAQRYLDEGARCVLVDVKPAGGSLARLIEAHPGRAA-AVTAD 61 +E K+A +TGAA GIGEAVA+ +GA VD P R A A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 VTRRDDIERIVATAVERFGGVDILFNNAALFDMRPLLDESWDVFDRLFAVNVKGMFFLMQ 121 V I+ I A G +DIL N A + + S + ++ F+VN G+F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 AVAQRMVEQGRGGKIINMSSQAGRRGEALVSHYCATKAAVISYTQSAALALAPHRINVNG 181 +V++ M+++ R G I+ + S ++ Y ++KAA + +T+ L LA + I N Sbjct: 126 SVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 IAPGVVDTPMWEQVDALFARYENRPLGEKKRLVGEA------VPLGRMGMPADLTGAALF 235 ++PG +T M + A G ++ + G +PL ++ P+D+ A LF Sbjct: 185 VSPGSTETDMQWSLWA-------DENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 236 LASADADYITAQTLNVDGG 254 L S A +IT L VDGG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 41.3 bits (96), Expect = 5e-06 Identities = 102/446 (22%), Positives = 167/446 (37%), Gaps = 77/446 (17%) Query: 4 KMLAAARCVASAALATAACAASA------GTLTIATLNNPDMIELKKLSPAFEKANPDIK 57 K+ AR +A +AL T +ASA G L I + L ++ FEK D Sbjct: 2 KIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEK---DTG 58 Query: 58 LNWVILEENVLRQRATTDITTGSGQFDVMAIGTYETPQWGKRGWLAPITGLPADYDLNDI 117 + + + L ++ TG G D++ + + G LA IT P + + Sbjct: 59 IKVTVEHPDKLEEKFPQVAATGDGP-DIIFWAHDRFGGYAQSGLLAEIT--PDKAFQDKL 115 Query: 118 VKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPDQP-TYDQIAEFADKLTDK 176 D++ YNG+L A P VE+ Y KDL +P+ P T+++I +L K Sbjct: 116 YPFTWDAVRYNGKLIAYPIAVEALSLIYNKDL-------LPNPPKTWEEIPALDKELKAK 168 Query: 177 SKGIYGICLRGKAGWGENMAYVSTVVNTFGGRWFD-ENW-----NAQINSPEWKKAITFY 230 K L + + ++ GG F EN + +++ K +TF Sbjct: 169 GKSALMFNL-------QEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFL 221 Query: 231 VNLLKK-----DGPPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVADKIG 285 V+L+K D + FN+ G+ AM I+ A N S+V G Sbjct: 222 VDLIKNKHMNADTDYSIAEAAFNK-------GETAMTINGPWAWS---NIDTSKV--NYG 269 Query: 286 FAAAPVAVTPKGSHWLWAWALAIPKTSKQQDAARKFVA-WATSKQYIEMVGKDEGWASVP 344 P ++ + I S ++ A++F+ + + + +E V KD+ Sbjct: 270 VTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK------ 323 Query: 345 PGTRASTYQRAEYKAAAPFSDFVLKAIETADPNDPSLKKV---PYTGVQYVGIPEFQSFG 401 P LK+ E DP + G IP+ +F Sbjct: 324 -----------------PLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFW 366 Query: 402 TVVGQAIAGAVAGQMTVDQALAAGQA 427 V A+ A +G+ TVD+AL Q Sbjct: 367 YAVRTAVINAASGRQTVDEALKDAQT 392
>PF01206#SirA family protein Length = 76 Score = 27.8 bits (62), Expect = 0.010 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 39 HPLMRTHNALFGLWGGPYLEVIAIDPDARDD 69 P+++ L + G L V+A DP + D Sbjct: 17 LPILKAKKTLATMNAGEVLYVMATDPGSVKD 47
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.006 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 179 LAEVEIGATPEQIVMVSGITQAID-----LIARIYVRPGDAVIVGDP 220 L +VEI AT + SG ++ I ++ I V+ G++V GD Sbjct: 77 LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDV 123
>PF04183#IucA / IucC family Length = 580 Score = 26.8 bits (59), Expect = 0.042 Identities = 6/24 (25%), Positives = 11/24 (45%) Query: 20 LALRQYYGHPQNKFWSLVGDVIER 43 L G P+ +F+ L+ V+ Sbjct: 493 SPLMVRLGVPERRFYQLLAAVLSD 516
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.7 bits (59), Expect = 0.020 Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 33 IAEIIKTRKWTQQHAARLLGMTQPKLSNMLR 63 I + + Q AA LLG+ + L +R Sbjct: 441 ILAALTATRGNQIKAADLLGLNRNTLRKKIR 471
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.8 bits (108), Expect = 2e-07 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 8/122 (6%) Query: 198 QRRERDAAEARAAARRAASAAATQPAAAPAAAPPAADDAEAK----KRAIIAAALERARK 253 ++ E+DA E A R A A + A A +E K A +E+ K Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 254 KKEELAAQGAAPKNTEGVSA---AVQAQIDAAEARRKRLAEQQAARDAQADDADRDDTDG 310 K E PK T VS + AE R+ ++ Q+ DT+ Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN-DPTVNIKEPQSQTNTTADTEQ 1170 Query: 311 PS 312 P+ Sbjct: 1171 PA 1172
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.0 bits (176), Expect = 1e-17 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 4/167 (2%) Query: 5 KIKRDPEGTRRRILMAAAEEFASGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVL 64 K K++ + TR+ IL A F+ G+ + +IA+ A +Y++F K LF+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 65 EHAFSALTEAERVLDLDGVPPVEAVTR---LAHFVWDYYRDHPELLRLINNENLHEARYL 121 E + S + E E +V R + + LL I + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 122 HKSTR-IREMMSPIVAMLGNVLMRGQKAGLFRGDVDPLRFYVTLSGL 167 + R + + L +A + D+ R + + G Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.013 Identities = 13/89 (14%), Positives = 29/89 (32%) Query: 410 REHAPEPKNGSAKDRPDATAGTSDTPAASAPALAAVPAGQAQRETAKAPATLAKRARAKS 469 + A E + + +A + + A + + Q K AT+ K +AK Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV 1114 Query: 470 SGTLSPKAAPAAKRASGTRAKPVRARKAA 498 + + + S + + + A Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 49.7 bits (118), Expect = 1e-07 Identities = 49/286 (17%), Positives = 87/286 (30%), Gaps = 18/286 (6%) Query: 867 AASMTTTASPSASAPVSATPSAGTASVTTTASPSAPVPVSAMPSATTASAMTTGSPSTAT 926 ++TT + A P + + A V P P A PS TT + + T Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPP---PAPATPSETTETVAENSKQESKT 1050 Query: 927 PA-----SAIPSGAAASLTTTASSSVSTPVSATPSGAAASVTTTASPSAPTSASPMSSGA 981 + + + A S+V + S T + + + Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 982 AASVTTTASPSAPTPAPAFGIRDARAAAGGAAASTAEPASPSTPAVSSPSAAATTAAPPA 1041 A V T + P + ++ AEPA + P V+ + T Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSET---VQPQAEPARENDPTVNIKEPQSQTNTTAD 1167 Query: 1042 TATFAAFTANAPATAPATSTLATVTAPSAPTTFATTAGATAPSPSSTNPPATTNPTPQTN 1101 T A T++ ST TT T P+ +S ++ P+ Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS-----ESSNKPKNR 1222 Query: 1102 WTATNTAAPSS--APSSTSQQPTATAPAAMISATTTAPTTPATAAT 1145 + + P + +++S + A + S T A + A A Sbjct: 1223 HRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA 1268 Score = 43.5 bits (102), Expect = 8e-06 Identities = 52/324 (16%), Positives = 94/324 (29%), Gaps = 48/324 (14%) Query: 538 TIAATEPQT--SAQAAAPASDTVRVDTVSASTSAIDDERTAETQSGAQVGAAQASIAPSS 595 T+ T T + QA P+ + + + + A + A + + Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 596 TAAAQHDAEPTTPLPASASNAASPRVTLDPQAVAAAVPVTAAASTAGRASAPWEAAAPVA 655 + DA TT + A V + Q A S E Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQT----------NEVAQSGSETKETQTTET 1100 Query: 656 AKPVSNAAATPASASLPPSADIVSGTAPVASAPVVGPRDDAQPAASAVVANSALNDLEAV 715 + + A + ++ T+ V+ P + QP A N Sbjct: 1101 KETATVEKEEKAKVETEKTQEVPKVTSQVS--PKQEQSETVQPQAEPAREND-------- 1150 Query: 716 TGTAVDADDAVARTSAPV----PAQIGSATAAQPVQSAPLSSTPMKPFASSTVSAPSATS 771 V+ + ++T+ PA+ S+ QPV + +T + + Sbjct: 1151 --PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSV-------VENPEN 1201 Query: 772 TTPATSSPTASPAPITQSLPRVATASQSEQSGRTASAAAAPQSPTASPAATAPSSSRFDV 831 TTPAT+ PT + + R + +S + ++ S A +S Sbjct: 1202 TTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND---RSTVALCDLTSTN-- 1256 Query: 832 PVAVTTTPAPAATSAAVAGTPSIA 855 A S A A +A Sbjct: 1257 --------TNAVLSDARAKAQFVA 1272 Score = 39.3 bits (91), Expect = 2e-04 Identities = 43/222 (19%), Positives = 59/222 (26%), Gaps = 42/222 (18%) Query: 1053 PATAPATSTLATVTAPSAPTTFATTAGATAPSPSSTNPPATTNPTPQTNWTATNTAAPSS 1112 T T PS P+ A + PPA P+ T A N+ S Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIA---RVDEAPVPPPAPATPSETTETVAENSKQESK 1049 Query: 1113 APSSTSQQPTATAPAAMISATTTAPTTPAT---------------AATSPTAPTPT---- 1153 Q T T A A T+ T T T Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 1154 ------LSGIATVPPSVATAPPSSPASIAA-PAAEPAA----------PAADTAAQPATT 1196 VP + P S P AEPA P + T T Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 1197 APARQPRPNAFEFHAPASFSVELPTLDLLEPASDEIEPITDE 1238 PA++ N + P + S + T + + + P T + Sbjct: 1170 QPAKETSSNVEQ---PVTESTTVNTGNSVVENPENTTPATTQ 1208 Score = 35.8 bits (82), Expect = 0.002 Identities = 47/325 (14%), Positives = 78/325 (24%), Gaps = 36/325 (11%) Query: 204 ASGTRMPVPPAPPATGAMPPPTIGSTASLARAAANAQPRPEPAPLPAGFEPMRPRPTAVR 263 V T + S S A P P P PA P T Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA-----TPSETTET 1039 Query: 264 PAAALRQPAAPRATVAPRAAAPAPARPLARPAGGTAGIGASADASRRRVAAPPQ--KRAP 321 A +Q + A TA A ++ V A Q + A Sbjct: 1040 VAENSKQESKTVEKNEQDATET------------TAQNREVAKEAKSNVKANTQTNEVAQ 1087 Query: 322 LYAWADKPAAPITPAPSVHETLRSIEASTAQWATLAGAAASVDAARTTASAAGVIGIGDA 381 + + T + E + T + + + V + + Sbjct: 1088 SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 382 SAAAGVAAPSAAS----GAVTSTMTDDVAPMVDPAIEHDTAATAHDDNAPIVLPAFVDVA 437 V S A T + + V+ + T T + N+ + P Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST--TVNTGNSVVENPENTT-- 1203 Query: 438 PAALASTDDTDVETRAEAGYDASANHTSDARAFAPHADGETPQIDAAQVASAIASASAPS 497 T +E+ H R+ P ++ S +A S Sbjct: 1204 ------PATTQPTVNSESSNKPKNRH---RRSVRSVPHNVEPATTSSNDRSTVALCDLTS 1254 Query: 498 EGAPIELAPWEDFVAQRAAAVGTSI 522 L+ A VG ++ Sbjct: 1255 TNTNAVLSDARAKAQFVALNVGKAV 1279 Score = 32.0 bits (72), Expect = 0.025 Identities = 37/262 (14%), Positives = 70/262 (26%), Gaps = 20/262 (7%) Query: 959 AASVTTTASPSAPTSASPMSSGAAASVTTTASPSAPTPAPAFGIRDARAAAGGAAASTAE 1018 ++TT + A + P ++ A V P P PA + A + T E Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPP-PAPATPSETTETVAENSKQESKTVE 1052 Query: 1019 PAS--PSTPAVSS----PSAAATTAAPPATATFAAFTANAPATAPATSTLATVTAPSAPT 1072 + + A + A T A + T + Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 1073 TFATTAGATAPSPSSTNPPATTNPTPQTNWTATNTAAPSSAPSSTSQQPTATAPAAMISA 1132 T P +S P A + P+ ++P S Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQ---PQAEPARENDPTVNIKEPQ--------SQ 1161 Query: 1133 TTTAPTTPATAATSPTAPTPTLSGIATVPPSVATAPPSSPASIAAPAAEPAAPAADTAAQ 1192 T T T A + + ++ TV + + +P + +P + + Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTV--NTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Query: 1193 PATTAPARQPRPNAFEFHAPAS 1214 + + P+ E +S Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSS 1241 Score = 31.6 bits (71), Expect = 0.034 Identities = 52/315 (16%), Positives = 92/315 (29%), Gaps = 27/315 (8%) Query: 163 NGRYARPTLWKPDPQARPKPRSKPAPRPPV-----EPVAPSGWLKPASGTRMPVPPAPPA 217 NGRY L+ P+ + R + P P PS + A PVPP PA Sbjct: 975 NGRY---DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA 1031 Query: 218 TGAMPPPTIGSTASLARAAANAQPRPEPAPLPAGFEPMRPRPTAVRPAAALRQPAAPRAT 277 T P T + A ++ + + E + V A A + Sbjct: 1032 T---PSETTETVAENSKQESKTVEKNEQDATET-----TAQNREVAKEAKSNVKANTQTN 1083 Query: 278 -VAPRAAAPAPARPLARPAGGTAGIGASADASRRRVAAPPQKRAPLYAWADKPAAPITPA 336 VA + + T A + P+ + + ++ A Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 337 PSVHETLRSIEASTAQWATLAGAAASVDAARTTASAAGVIGIGDASAAAGVAAPSAASGA 396 E ++ Q + A + A+ T+S + + Sbjct: 1144 EPARENDPTVNIKEPQ-SQTNTTADTEQPAKETSSN--------VEQPVTESTTVNTGNS 1194 Query: 397 VTSTMTDDVAPMVDPAIEHDTAATAHDDNAPIVLPAFVDVAPAALASTDDTDVETRAEAG 456 V + P + +++ + + V +V PA S++D + Sbjct: 1195 VVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPAT-TSSNDRSTVALCDLT 1253 Query: 457 YDASANHTSDARAFA 471 + SDARA A Sbjct: 1254 STNTNAVLSDARAKA 1268
>adhesinb#Adhesin B signature. Length = 310 Score = 25.6 bits (56), Expect = 0.014 Identities = 8/35 (22%), Positives = 12/35 (34%) Query: 7 RIAKLAAAAALAAGLAGCGLAAAPCRVASAGLKIV 41 + L GLA C + S+ L +V Sbjct: 3 KCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVV 37
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 112 bits (282), Expect = 3e-31 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 11 TVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQIACLILDVRMSGM 70 T+ V DDD A+R L L GY V+ S+A AG ++ DV M Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----AGDGDLVVTDVVMPDE 60 Query: 71 SGLELQERLIADNAALPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLD 130 + +L R+ LP++ ++ A+ +KGA D++ KPFD EL ++ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 131 KARSESKSVQEQRAASERLSKLTAREQQVLERI 163 + + +++ L +A Q++ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.018 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 18/85 (21%) Query: 702 PVLIEQVLV-NLMKNAAEAMADVKPPSADGVIRVVADIDAGFVDIRVIDQGPGVDEATAE 760 P ++ Q LV N +K+ + G I + D G V + V + G + T E Sbjct: 256 PPMLVQTLVENGIKHG------IAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309 Query: 761 RLFEPFYSTKSDGMGMGLNICRSII 785 S G G+ N+ + Sbjct: 310 ----------STGTGL-QNVRERLQ 323
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 0.002 Identities = 14/44 (31%), Positives = 24/44 (54%) Query: 168 VPSPAAGVVKDIKVKVGDTVSEGTLIVLLEAAGAAPAAAAPQAS 211 + +VK+I VK G++V +G +++ L A GA Q+S Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSS 142
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.4 bits (79), Expect = 6e-04 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 131 YVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLD----SKAPMTEQIEVTDED-RDYE 185 +D +G L + P+ S K++ VL + +I +D DY Sbjct: 43 IEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYS 102 Query: 186 KGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMNAKAKALGMTD 245 + L+ G ++ ++ A+ S+N AA L G A + A + +G Sbjct: 103 PVSEKHLADG--MTVGELCAAAITMSDNSAANLLLATVGG-----PAGLTAFLRQIGDNV 155 Query: 246 THFE-NSTGLSSSNVSSARD 264 T + T L+ + ARD Sbjct: 156 TRLDRWETELNEALPGDARD 175
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 28.0 bits (62), Expect = 0.037 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 23 RDAGYEV-FVPPAQTCCGQPAYNSGERALARDLAEKMLREFEQFDYVVAPSGSCGGMI 79 RD G ++ +P AQ QP N +RA AR L+ DY+V + G M+ Sbjct: 149 RDFGIDIPNIPQAQRQAAQPPLNDQKRAAARI---AWLKNCAGIDYMVKDPNNPGHMM 203
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 319 bits (820), Expect = e-104 Identities = 137/366 (37%), Positives = 192/366 (52%), Gaps = 41/366 (11%) Query: 306 LRRAGRDAGSASRRPGATERHVGALTPFLHSSDARVAQQAELALRVASKRLPILVLGETG 365 + GR RRP E P + S A + + + R+ L +++ GE+G Sbjct: 112 IGIIGRALAEPKRRPSKLEDDSQDGMPLVGRS-AAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 366 AGKEVFARAIHDAGARRTRPFVAVNCGALPEALIESELFGYAAGAFTGARKHGARGKIAQ 425 GKE+ ARA+HD G RR PFVA+N A+P LIESELFG+ GAFTGA+ G+ Q Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-GRFEQ 229 Query: 426 ADGGTLFLDEIGDMPLALQTRLLRVLADGEVVPLGSDTPVRVDLDVICATHRDLAQMVAA 485 A+GGTLFLDEIGDMP+ QTRLLRVL GE +G TP+R D+ ++ AT++DL Q + Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQ 289 Query: 486 GTFREDLYYRLSGATFELPPLRERADVRDLIAAVFAEEAQATG-HVLTLDTTLAEQLAAY 544 G FREDLYYRL+ LPPLR+RA+ + F ++A+ G V D E + A+ Sbjct: 290 GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAH 349 Query: 545 PWPGNVRQLRNVMRYACAVCDGARVTRRDLPADVAAQL---------------------- 582 PWPGNVR+L N++R A+ +TR + ++ +++ Sbjct: 350 PWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVE 409 Query: 583 ----------------GADTGSVLPDDERSRIVAALTAHRWRPDAAAQALGMSRATLYRR 626 VL + E I+AALTA R AA LG++R TL ++ Sbjct: 410 ENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK 469 Query: 627 IAKYRI 632 I + + Sbjct: 470 IRELGV 475
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 144 bits (363), Expect = 3e-44 Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 3/256 (1%) Query: 4 ALEGQVAIVTGGARGIGRGIALTLAGAGADILLADLLDDALDSTAREVRALGRRAAVAKV 63 +EG++A +TG A+GIG +A TLA GA I D + L+ ++A R A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 64 DVTQPAQVDAMVAQALGELGRLDILVNCAGVISIHPVDQLSERDWDVVMDVNAKGTFLGC 123 DV A +D + A+ E+G +DILVN AGV+ + LS+ +W+ VN+ G F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 124 RAALPHLKAQRSGRIVNVASIAGKEGFPNLAHYSASKFAVVGFTNALAKEVARDGITVNA 183 R+ ++ +RSG IV V S ++A Y++SK A V FT L E+A I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 184 ICPGIVRTYMWDRLSDEWKAAGESVEESWQRHQLTLIPQGRAQTPEDMGRLALFFAT--M 241 + PG T M L + A + ++ S + + IP + P D+ LF + Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG-IPLKKLAKPSDIADAVLFLVSGQA 243 Query: 242 DNVTGQAVNVDGGFTF 257 ++T + VDGG T Sbjct: 244 GHITMHNLCVDGGATL 259
>PF09025#YopR Core Length = 143 Score = 27.7 bits (61), Expect = 0.038 Identities = 15/28 (53%), Positives = 18/28 (64%) Query: 103 TATGGDPAAAGERLAGALKGALGDAFGK 130 A GG+P AAG RLAG GALG+ + Sbjct: 34 QALGGEPPAAGRRLAGLENGALGERLLQ 61
>FLAGELLIN#Flagellin signature. Length = 507 Score = 28.9 bits (64), Expect = 0.035 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 6/57 (10%) Query: 208 AALRALPHLYGDASVLDEARQRLPALPEIARALDDLAQLA------AQAKGVEVAID 258 +L +L S L A +RL + I A DD A A + KG+ A Sbjct: 9 LSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASR 65
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 6e-06 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 102 REERASIRQAQLALDDEQRAVRAKQRDEQIALKQAQNAAEAPQRAANEA--ANAAAFRDK 159 R + + + +E+IA + A P A + A K Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIA--RVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 160 QEQNALKQAQRGAEAPQRAANKQAYDQKQADFQRKLDEAHAQAAQKAQARAENAARYEQK 219 QE +++ ++ A + A + K AQ+ + + + Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 220 QKEAAQHKAEVEQRQREAAEKAKQQQQQGQ 249 ++ + K E E+ Q ++ +Q Q Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Score = 28.9 bits (64), Expect = 0.024 Identities = 13/154 (8%), Positives = 47/154 (30%), Gaps = 1/154 (0%) Query: 96 VARDKMREERASIRQAQLALDDEQRAVRAKQRDEQIALKQAQNAAEAPQRAANEAANAAA 155 VA+ + + + E+ +AK E+ + +P++ +E A Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEE-KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 156 FRDKQEQNALKQAQRGAEAPQRAANKQAYDQKQADFQRKLDEAHAQAAQKAQARAENAAR 215 ++ + + ++ A +Q + ++ ++ + E+ + Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 216 YEQKQKEAAQHKAEVEQRQREAAEKAKQQQQQGQ 249 Q + + + + ++ + Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237
>PF06580#Sensor histidine kinase Length = 349 Score = 25.2 bits (55), Expect = 0.021 Identities = 4/24 (16%), Positives = 14/24 (58%) Query: 44 LHRLKKEKLLAKDKIIMLQSQLEP 67 + + K + + +++ L++Q+ P Sbjct: 149 IDQWKMASMAQEAQLMALKAQINP 172
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 343 bits (882), Expect = e-116 Identities = 130/368 (35%), Positives = 185/368 (50%), Gaps = 44/368 (11%) Query: 129 IAYVERLTTVRSASAQPSAEGLVGSAESFNAALGALQRVAPSTLPVLLLGESGTGKELFA 188 +A +R + +Q LVG + + L R+ + L +++ GESGTGKEL A Sbjct: 119 LAEPKRRPSKLEDDSQDGM-PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVA 177 Query: 189 RALHEASDRAMGPFVVVDCSGIAETLFESELFGYEKGAFTGANQRKPGLVETAQGGTLFL 248 RALH+ R GPFV ++ + I L ESELFG+EKGAFTGA R G E A+GGTLFL Sbjct: 178 RALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL 237 Query: 249 DEIGDVPLPMQVKLLRLIESGTFRRVGGVEALRADFRLVAATHKPLRDMIADGRFRQDLY 308 DEIGD+P+ Q +LLR+++ G + VGG +R+D R+VAAT+K L+ I G FR+DLY Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLY 297 Query: 309 YRINAFPIALPPLRERRGDVALLAESILRRIANARAAAGDALARPYVLTEPALACLDAYA 368 YR+N P+ LPPLR+R D+ L +++ + AL + A+ Sbjct: 298 YRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-------LDVKRFDQEALELMKAHP 350 Query: 369 WPGNIRELRNVLERACLFADDGTIRVEHLPAELVSAAAAPPPVAAAARGVS--------- 419 WPGN+REL N++ R I E + EL S P AAAR S Sbjct: 351 WPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEE 410 Query: 420 --------------------------DAELVRLA-ASFGGTRKALAAYVGLSERTLYRRM 452 + L+ A + G + A +GL+ TL +++ Sbjct: 411 NMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470 Query: 453 KALGLRVR 460 + LG+ V Sbjct: 471 RELGVSVY 478
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 452 bits (1165), Expect = e-144 Identities = 233/1056 (22%), Positives = 431/1056 (40%), Gaps = 71/1056 (6%) Query: 12 LSAWALRHQALVVYLIVLATVAGILAYTRLAQSEDPPFTFRVMVIRTFWPGATARQVQEQ 71 ++ + +R L ++ +AG LA +L ++ P + + +PGA A+ VQ+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 72 VTDRIGRKLQETPAIDFLRSYS-RPGESLIFFTMKDSAPVKDVPETWYQIRKKVGDIGYT 130 VT I + + + ++ S S G I T + D Q++ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG---TDPDIAQVQVQNKLQLATPL 117 Query: 131 LPPGVQGP-FFNDEFGDVYTNIWTLEGDG--FSPAQLHDYAD-QLRTVLLRVPGVAKVDY 186 LP VQ ++ Y + D + + DY ++ L R+ GV V Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 187 FGDPAQRIFIEVDNAKLTRLGISPQQLGQAINAQNDVSSAGVLTTTDD------RVFVRP 240 FG + I +D L + ++P + + QND +AG L T + Sbjct: 178 FGAQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 241 SGQFDNVAAIADTLIRIN--GRTFRLGDLATVRRGYDDPAVTQMRTAASGTGAGKPVLGI 298 +F N +R+N G RL D+A V G ++ V GKP G+ Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNV-------IARINGKPAAGL 289 Query: 299 GVTMQPGGDVIRLGKALDAQSKALQAQLPAGLKLTEVSSMPHAVSHSVDDFLEAVAEAVA 358 G+ + G + + KA+ A+ LQ P G+K+ V S+ + ++ + EA+ Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIM 349 Query: 359 IVLIVSLVSLG-LRTGMVVVISIPVVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDA 417 +V +V + L +R ++ I++PVVL T + F ++ +++ +VLA+GLLVDDA Sbjct: 350 LVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDA 409 Query: 418 IIAVEMMA-VKLEQGYNRARAAAFAYTSTAFPMLTGTLVTVSGFLPIALAKSSTGEYTRS 476 I+ VE + V +E A + + ++ +V + F+P+A STG R Sbjct: 410 IVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469 Query: 477 IFEVSAIALIASWFAAVVLIPLLGYHLLPERKKHAHDAHLPDDHEHEIYDTRFYRRLRGW 536 A+ S A++L P L LL H+ ++T F + + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE---NKGGFFGWFNTTFDHSVNHY 526 Query: 537 ID---WCIERRFVVLAITVALFVVSLLGFSLVPQQFFPSSDRPELLVDLRLPEGASFAAT 593 + + L I + ++ F +P F P D+ L ++LP GA+ T Sbjct: 527 TNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERT 586 Query: 594 LRETERVEQAIAK--RPEIDHWVNFVGSGAPRFYLPLDQQLQLPNFAQFVITAKSVEDR- 650 + ++V K + ++ G Q N ++ K E+R Sbjct: 587 QKVLDQVTDYYLKNEKANVESVFTVNGFSFSG---------QAQNAGMAFVSLKPWEERN 637 Query: 651 --EKLASWLETTLRDRFPAVRWRLSRLENGPPV-------GYPVQ-FRVSGDDIATVRSI 700 E A + + +R N P + G+ + +G + Sbjct: 638 GDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQA 697 Query: 701 ADKVAATMR---GDARTVNVQFDWDEPAERSVRFELDQKKARELNVTSQDVSSFLAMTLS 757 +++ +V D + E+DQ+KA+ L V+ D++ ++ L Sbjct: 698 RNQLLGMAAQHPASLVSVRPNGLEDTA---QFKLEVDQEKAQALGVSLSDINQTISTALG 754 Query: 758 GTTVTQYRERDKLIAVDLRAAQPDRVDPAKLAGLAMPTPNG-AVPLGSLGHFTPTLEYGV 816 GT V + +R ++ + ++A R+ P + L + + NG VP + Sbjct: 755 GTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPR 814 Query: 817 IWERDRQPTITVQSDVRAGAQGIDVTHAIDGKLNALRTQLPVGYRVEIGGSVEESAKAQA 876 + + P++ +Q + G D ++ L ++LP G + G + + Sbjct: 815 LERYNGLPSMEIQGEAAPGTSSGDAMALME----NLASKLPAGIGYDWTGMSYQERLSGN 870 Query: 877 SINAQMPLMAIAVFTLLMIQLQSFSRVLMVVLTAPLGLIGVVGTLLLFGQPFGFVAMLGV 936 A + + + VF L +S+S + V+L PLG++GV+ LF Q M+G+ Sbjct: 871 QAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGL 930 Query: 937 IAMFGIIMRNSVILVDQIEQ-DIAAGHGRFDAIVGATVRRFRPITLTAAAAVLALIPLLR 995 + G+ +N++++V+ + G G +A + A R RPI +T+ A +L ++PL Sbjct: 931 LTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAI 990 Query: 996 SNFFG-----PMATALMGGITSATVLTLFYLPALYA 1026 SN G + +MGG+ SAT+L +F++P + Sbjct: 991 SNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 86.8 bits (215), Expect = 3e-19 Identities = 101/533 (18%), Positives = 193/533 (36%), Gaps = 52/533 (9%) Query: 541 IERRFVVLAITVALFVVSLLGFSLVPQQFFPSSDRPELLVDLRLPEGASFAATLRETERV 600 I R + + L + L +P +P+ P + V P + T+ + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 601 EQAIAKRPEIDHWVNFVGSGAPRFYLPLDQQLQL-PNFAQFVITAKSVEDREKLASWLET 659 EQ + + + ++ A + L Q P+ AQ V+ + KL Sbjct: 66 EQNMNGIDNLMY-MSSTSDSAGSVTITLTFQSGTDPDIAQ-------VQVQNKLQL---- 113 Query: 660 TLRDRFP-AVRWRLSRLENGPPVGYPVQFRVSGDDIATVRSIADKVAATMRGDARTVN-- 716 P V+ + +E V VS + T I+D VA+ ++ +N Sbjct: 114 -ATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGV 172 Query: 717 --VQFDWDEPAERSVRFELDQKKARELNVTSQDVSSFL--------AMTLSGTTVTQYRE 766 VQ A+ ++R LD + +T DV + L A L GT ++ Sbjct: 173 GDVQLF---GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQ 229 Query: 767 RDKLIAVDLRAAQPDRVDPAKLAGLAMPTPNGAVPLGSLGHFTPTLE-YGVIWERDRQPT 825 + I R P+ L + + V L + E Y VI + +P Sbjct: 230 LNASIIAQTRFKNPEEFGKVTLRVNSDGSV---VRLKDVARVELGGENYNVIARINGKPA 286 Query: 826 ITVQSDVRAGAQGIDVTHAIDGKLNALRTQLPVGYRVEIGGSVEESAKAQASINAQMPLM 885 + + GA +D AI KL L+ P G +++ + + Q SI+ + + Sbjct: 287 AGLGIKLATGANALDTAKAIKAKLAELQPFFPQG--MKVLYPYDTTPFVQLSIHEVVKTL 344 Query: 886 AIA---VFTLLMIQLQSFSRVLMVVLTAPLGLIGVVGTLLLFGQPFGFVAMLGVIAMFGI 942 A VF ++ + LQ+ L+ + P+ L+G L FG + M G++ G+ Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 943 IMRNSVILVDQIEQDIAAGHGRF-DAIVGATVRRFRPITLTAAAAVLALIPLL-----RS 996 ++ +++++V+ +E+ + +A + + + A IP+ Sbjct: 405 LVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 997 NFFGPMATALMGGITSATVLTLFYLPALYATWFRVKRDERDPQDGPPHGAPSG 1049 + + ++ + + ++ L PAL AT + P H G Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLK-------PVSAEHHENKGG 510
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.2 bits (107), Expect = 3e-07 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 6/128 (4%) Query: 66 IAGKIVER-KVRLGDTVKAGQVVALLDPSDVEKNAASAQAQLDAAS---HRLAFAKQQLD 121 I IV+ V+ G++V+ G V+ L E + Q+ L A R + ++ Sbjct: 102 IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE 161 Query: 122 RDRAQAR--ENLIATAQLEQTEDSYTAALAQRDQAQQQLALAKNQLRYATLVADHAGYIT 179 ++ + + + E +L + + Q + +L A+ + Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA 221 Query: 180 AEQADTGQ 187 Sbjct: 222 RINRYENL 229 Score = 39.8 bits (93), Expect = 1e-05 Identities = 28/199 (14%), Positives = 62/199 (31%), Gaps = 33/199 (16%) Query: 111 HRLAFAKQ-----------------QLDRDRAQARENLIATAQLEQTE--DSYTAALAQR 151 H + + Q++ + A+E QL + E D Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI 311 Query: 152 DQAQQQLALAKNQLRYATLVADHAGYITAEQADT-GQNVSAGQPVYQLAWAGDVDVV-VD 209 +LA + + + + + A + + + T G V+ + + + D V Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL 371 Query: 210 VPETALAGLSPGHPATVTLPSLPGRTF---AAKVREIAPAADPQSRT---YRMRLTLAAP 263 V + ++ G A + + + P + KV+ I A R + + +++ Sbjct: 372 VQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Query: 264 DASA------IRLGMTANV 276 S + GM Sbjct: 432 CLSTGNKNIPLSSGMAVTA 450
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.4 bits (172), Expect = 3e-17 Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 10/202 (4%) Query: 5 RLTREQSRDQTRERLLNAAHRIFLKKGYVAASVEDIAAAAGYTRGAFYSNFRSKSELLLE 64 R T+++++ +TR+ +L+ A R+F ++G + S+ +IA AAG TRGA Y +F+ KS+L E Sbjct: 3 RKTKQEAQ-ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 65 LLERDHASVQADFEAIFEE--GGPREQMESMALAYYRKLFRDDEYSLL---WVEAKLQAA 119 + E +++ + G P + + + ++ LL Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 120 RDAKFRVRFNQFLRGKRVQMAEFIRRFADRAGTPLLLPAETLAFGLMSLCDGVQSYYTAD 179 A + ++ + ++ + P L A + G+ + Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 180 PQHVSAEAAESVLAGFFARVVL 201 PQ + A + ++L Sbjct: 182 PQSFDLKKE----ARDYVAILL 199
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 681 bits (1759), Expect = 0.0 Identities = 231/845 (27%), Positives = 353/845 (41%), Gaps = 63/845 (7%) Query: 2 RIRHSLLCVSVLVVGSQSHATEFNSSFLSIDGTTDVDLSQFSQADFTLPGEYMLEVQVND 61 +R + C S FN FL+ D DLS+F PG Y +++ +N+ Sbjct: 27 FVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNN 86 Query: 62 LFYGLQPIEFVALDASGAGKPCLRAELVAQFGLKPSLAKDLPRFHGGRCVDL-AAIEGVT 120 + + + F D+ PCL +A GL + + CV L + I T Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDAT 146 Query: 121 VRYLKGDGRLRITIPQAALEFTDGTYLPPERWSDGIAGAMLDYRVIANTNRSFGSGGRQT 180 + G RL +TIPQA + Y+PPE W GI +L+Y N+ ++ G + Sbjct: 147 AQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQN--RIGGNS 204 Query: 181 NAVQAYGTIGANWGAWRVRGDYQAQSNVGNTVYADRT-FRFSRLYAFRALPSIQSTVTFG 239 + G N GAWR+R + N ++ + ++ + R + ++S +T G Sbjct: 205 HYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLG 264 Query: 240 DDYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQQGRVLYVTR 299 D Y DIFD GA + SDD MLP S RG+AP+I G+AR A VT+ Q G +Y + Sbjct: 265 DGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNST 324 Query: 300 VSPGAFALQNIN-TSVQGTLDVAVEEEDGSVQRFQVTTAAVPFLARTGQFRYKAAVGKPR 358 V PG F + +I G L V ++E DGS Q F V ++VP L R G RY G+ R Sbjct: 325 VPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 384 Query: 359 RFGGAGITPFFGFGEAAYGLPFDVTVYGGFIAASGYTSIALGVGRDFGTFGAVSADVTHA 418 P F +GLP T+YGG A Y + G+G++ G GA+S D+T A Sbjct: 385 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 444 Query: 419 RARLWWNGATRHGNSYRINYSKHFDGLDADVRFFGYRFSERDYTNFAQFSGDPTAYGL-- 476 + L + + G S R Y+K + +++ GYR+S Y NFA + Sbjct: 445 NSTL-PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIE 503 Query: 477 -------------------ANSKQRYSATMSKRFGDT-SAYFSYDQTTYWE-RASEQRVG 515 N + + T++++ G T + Y S TYW +++ Sbjct: 504 TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQ 563 Query: 516 VTLTRAFSVGALRNLNVSVSAFRTQSAGASGNQVSVTATLPIGGRHTVTSNLTTGNGSTS 575 L AF ++N ++S T++A G + + I H + S+ + S Sbjct: 564 AGLNTAF-----EDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHAS 618 Query: 576 VNAGYLYDDPAGRT----------------YQISAGTTDGRASANASFRQRTSAYQ---- 615 + +D T Y + G G + S T Y+ Sbjct: 619 ASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYG 678 Query: 616 -LTAQASTVANGYAAASLEVDGSLVATQYGIAAHANGNAGDTRLLVSTDGVRDVPLS-GT 673 S ++ V G ++A G+ DT +LV G +D + T Sbjct: 679 NANIGYS-HSDDIKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKVENQT 735 Query: 674 LTHTDSRGYAVLDGISPYNVYDAAVNVEKLPLEVQVSNPIQRMVLTDGAIGFVQFSAARG 733 TD RGYAVL + Y A++ L V + N + +V T GAI +F A G Sbjct: 736 GVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVG 795 Query: 734 SNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEGGAAYLTQVQPKSSLVVRAGERT-- 791 L +TLT KPLPFGA V + + GIV + G YL+ + + V+ GE Sbjct: 796 IKLLMTLTH-NNKPLPFGAMVTS-ESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENA 853 Query: 792 LCTID 796 C + Sbjct: 854 HCVAN 858
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 27.3 bits (60), Expect = 0.036 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Query: 1 MKKTLLTAAALAVLSTSAFAAGA 23 MKKTLL A A+ LST+ FAAGA Sbjct: 1 MKKTLLAAGAVVALSTT-FAAGA 22
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1068 bits (2764), Expect = 0.0 Identities = 520/1032 (50%), Positives = 711/1032 (68%), Gaps = 6/1032 (0%) Query: 1 MARFFIDRPVFAWVIALFIMLGGAFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEES 60 MA FFI RP+FAWV+A+ +M+ GA AI LPVAQYP IAPP VS+ A YPGA AQ V+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTALIEREMNGAPGLLYTSATS-SAGMASLYLTFRQGVNADLAAVEVQNRLKTVEARLPE 119 VT +IE+ MNG L+Y S+TS SAG ++ LTF+ G + D+A V+VQN+L+ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVRRDGIQVEKAADNIQLVVSLTSDDGRMTGVQLGEYASANVVQALRRVDGVGRVQFWGA 179 V++ GI VEK++ + +V SD+ T + +Y ++NV L R++GVG VQ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPVKLAGHGLTASDIAAAVRAHNARVTVGDIGRSAVPDSAPIAATVFADAPL 239 +YAMRIW D L + LT D+ ++ N ++ G +G + + A++ A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 KTPADFGAIALRSQADGAALYLRDVARIEFGGSDYNYPSYVNGKVAVGMGIKLAPGSNAV 299 K P +FG + LR +DG+ + L+DVAR+E GG +YN + +NGK A G+GIKLA G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ATEKRVRAAMDELSAYFPPGVKYQIPYETSSFVRMSMNKVVTTLIEAAVLVFLVMFLFMQ 359 T K ++A + EL +FP G+K PY+T+ FV++S+++VV TL EA +LVFLVM+LF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLM 419 N+RATLIPT+ VPV L GTF ++ A G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 VEERLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIAF 479 +E++L P +AT K+M QI GA+VGI +VL++VF+PMAFFGG+ G IYRQF++++ ++A Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVDDGHHD-KRGFFGWFNRFVARSTQRYATRVGAMLNKPLRW 538 S +AL LTPALCATLLKPV HH+ K GFFGWFN S Y VG +L R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LVVYGALTAVAALMLTRLPSAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRE 598 L++Y + A ++ RLPS+FLP+EDQG F+ M+ P G T + + +V Y + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 EPAAY--TFALGGFNLYGEGPNGGMIFVTLKNWNARQAARDHVQAIVARVNERFAGTPNT 656 E A F + GF+ G+ N GM FV+LK W R + +A++ R + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 TVFAMNSPALPDLGSTGGFDFRMQNRGGLDYAAFSAAREQLLAAGAKD-AALTDLMFAGT 715 V N PA+ +LG+ GFDF + ++ GL + A + AR QLL A+ A+L + G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 QDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGDFMHGTQVRRVIVQADGQHRL 775 +D Q KL++D+ KA ALGVS+ +IN T++ G Y+ DF+ +V+++ VQAD + R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 DPDDVKKLRVRNARGEMVPLAAFATLHWTLGPPQLTRYNGYPSFTINGSAAPGHSSGEAM 835 P+DV KL VR+A GEMVP +AF T HW G P+L RYNG PS I G AAPG SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AAMERIAATLPAGIGHAWSGQSFEERLSGAQAPLLFALSVLVVFLALAALYESWSIPLAV 895 A ME +A+ LPAGIG+ W+G S++ERLSG QAP L A+S +VVFL LAALYESWSIP++V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 MLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLLAQR-MSLA 954 MLVVPLG++G +L TL ND+YF VGL+ TIGLSAKNAILIVE AKDL+ + + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 QAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQTAIGTGVLGGVIAATVLAVFL 1014 +A L A R+RLRPI+MTSLAF +GVLPLA ++GA SGAQ A+G GV+GG+++AT+LA+F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFVVVGRLF 1026 VP+FFVV+ R F Sbjct: 1021 VPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 9e-06 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 64 RRAEVRARVAGIVTARTYDEGQEVKQGAVLFRIDPAPLKAARDAAQGALAKAQAAAAAAA 123 R E++ IV EG+ V++G VL ++ +A Q +L +A+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 124 DKRRRYADLVRDHAVSERDYTEAVAADTQAKAEVASAKAELA-----RAQLQLDYANVTA 178 R + ++ + + K + + + Q +L+ A Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214 Query: 179 PISGRARRALVTEGAL 194 R E Sbjct: 215 ERLTVLARINRYENLS 230 Score = 37.1 bits (86), Expect = 1e-04 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 5/102 (4%) Query: 101 LKAARDAAQGALAKAQAAAAAAADKRRRYADLVRDHAVSERDYTEAVAAD-TQAKAEVAS 159 + A L ++ ++ + + + + Q + Sbjct: 257 QENKYVEAVNELRVYKSQLEQI---ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 160 AKAELARAQLQLDYANVTAPISGR-ARRALVTEGALVGQGEA 200 ELA+ + + + + AP+S + + + TEG +V E Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 108 bits (270), Expect = 2e-31 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 4/213 (1%) Query: 1 MARKTREESLAIKHRILDAAELVLLDKGVAQTAMADLAEAAGMSRGAVYGHYRNKMEVCL 60 MARKT++E+ + ILD A + +GV+ T++ ++A+AAG++RGA+Y H+++K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMCDRAFARTSEGFEAGDGLPA---FATLRHAASHYLRQCGEPGSMQRVLVILYAKCEQS 117 + + + + E + LR H L + ++ I++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 DENAALLRRRMLLELQTLRITKALLRRAIEAGELAADLDVHLAAVYLVSLLEGVFASMIW 177 E A + + + L L++ + L+ IEA L ADL AA+ + + G+ + ++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 178 TNRLRGNLWNDAEAMLDAGFDAVRTSAALRRPA 210 + +L +A + + LR PA Sbjct: 181 APQSF-DLKKEARDYVAILLEMYLLCPTLRNPA 212
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.2 bits (68), Expect = 0.015 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 11/65 (16%) Query: 76 IGGWLFGRIADRHGRRTAMMISVLMMCGGSLVIAVLPTYAQI-----------GALAPAL 124 IG ++G+++D+ G + ++ +++ C GS++ V ++ + A PAL Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPAL 123 Query: 125 LLVAR 129 ++V Sbjct: 124 VMVVV 128
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 9e-04 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 4/94 (4%) Query: 48 EVPAPAAGVLAQVLQNDGDTVVADQVIATIDTEAKAGAAEAAAGAAEVKPAAAPAAAPAA 107 E+ ++ +++ +G++V V+ + A AEA + A Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLT----ALGAEADTLKTQSSLLQARLEQTRY 153 Query: 108 QPAAATAAASTATASSGTASPAAAKLLAEKGLSA 141 Q + + + P + E+ L Sbjct: 154 QILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 168 bits (428), Expect = 4e-47 Identities = 101/435 (23%), Positives = 170/435 (39%), Gaps = 62/435 (14%) Query: 5 LRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAE--RVMDSNDIEKERGITILAKNCA 62 + NI ++AHVD GKTTL + LL SG E V + D+ +E++RGITI + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLK 122 ++E T +NI+DTPGH DF EV R LS++D +LL+ A +G QTR + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PIVVVNKIDRPGARIDWV-------------INQTFDLFDKLGATE----EQLDFPIV-- 163 I +NKID+ G + V I Q +L+ + T EQ D I Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 164 -----------------YASGLNGY---ASLDP-----AAREGDMRPLFEAILAHVPVRP 198 + SL P A + L E I Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 ADPDAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQQVAMRFGPEGEVLNRKINQVLSF 258 + L ++ ++YS R+ R+ G + V + E E KI ++ + Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI---SEKE--KIKITEMYTS 297 Query: 259 KGLERVQVESAEAGDIVLINGIEDVGIGATICAVDTPEALPMITVDEPTLTMNFLVNSSP 318 E +++ A +G+IV++ E + + + + I P L + Sbjct: 298 INGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 319 LAGREGKFVTSRQIRDRLMKELNHNVALRVRDTGDETVFEVSGRGELHLTILVENMRRE- 377 + D L++ V E + +S G++ + + ++ + Sbjct: 357 QREMLLDALLEISDSDPLLR-------YYVDSATHEII--LSFLGKVQMEVTCALLQEKY 407 Query: 378 GYELAVSRPRVVMQE 392 E+ + P V+ E Sbjct: 408 HVEIEIKEPTVIYME 422 Score = 35.6 bits (82), Expect = 6e-04 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 1/100 (1%) Query: 387 RVVMQEIDGVKHEPYELLTVDVEDEHQGGVMEELGRRKGEMLDMASDGRGRTRLEYRIPA 446 V+++ EPY + E+ + + ++D L IPA Sbjct: 525 EQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVD-TQLKNNEVILSGEIPA 583 Query: 447 RGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKEGSVGERRN 486 R + ++S+ T G + Y V + R Sbjct: 584 RCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.030 Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 21/142 (14%) Query: 363 DAGALRAQLK---GRYADFDLSVANYNQTL----ISALNDVATQVAAIRAIDRQMGDAQR 415 D GA + +L+ GRY ++ V NQT+ I+ N++ V ++ + + ++ Sbjct: 963 DLGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDE 1022 Query: 416 ALDASTRAYDLAVIRYKAGLSPQLQVLTADSNRLASEQTVTNLKMRRRDMQLALIKALGG 475 A +P T ++ S+Q ++ +D + Sbjct: 1023 APVPP--------------PAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 476 GFDATGTALAAPETAKQTRQAA 497 +A A +T + + + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGS 1090
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 72.2 bits (177), Expect = 8e-16 Identities = 43/270 (15%), Positives = 84/270 (31%), Gaps = 28/270 (10%) Query: 94 ADSQVALQQAEANLAQTVRQVRGLFVNDDQYRAQVALRQSDLSKAQDDLRRRLAVAQTGA 153 + Q Q E NL + + + ++Y + +S L L + A+A+ Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS-LLHKQAIAKHAV 254 Query: 154 VSQE--------EISHARDAVRAAQASLDAAQQQLASNRALTANTTIASHPNVLAAAAKV 205 + QE E+ + + ++ + +A+++ L N + + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 206 RD----AYLANARNTLPAPVTGYVAKRSVQ-VGQRVSPGTPLMSVVPLNAV-WVDANFKE 259 + + APV+ V + V G V+ LM +VP + V A + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 260 VQLKHMRIGQPVEL--TADIYGSSVVYHGKVVGFSAGTGSAFSLLPAQNATGNWIKVVQR 317 + + +GQ + A Y GKV + G V+ Sbjct: 375 KDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIIS 427 Query: 318 LPVRIELDPKDLDKHPLRIGLSMQVDVNIK 347 + + + M V IK Sbjct: 428 IEENCLST----GNKNIPLSSGMAVTAEIK 453 Score = 49.8 bits (119), Expect = 1e-08 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 22/174 (12%) Query: 56 VNGNVVQITPQVTGTVIAVKADDTQTVKAGDPLVVLDPADSQVALQQAEANLAQT----- 110 +G +I P V + + ++V+ GD L+ L ++ + +++L Q Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 111 ----------VRQVRGLFVNDDQYRAQVA----LRQSDLSKAQ-DDLRRRLAVAQ-TGAV 154 + ++ L + D+ Y V+ LR + L K Q + + + Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 155 SQEEISHARDAVRAAQASLDAAQQQLASNRALTANTTIASHPNVLAAAAKVRDA 208 + E + + + +L +L IA H VL K +A Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKH-AVLEQENKYVEA 264
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 137 bits (347), Expect = 1e-37 Identities = 85/396 (21%), Positives = 159/396 (40%), Gaps = 16/396 (4%) Query: 27 VFMNVLDTSIANVAIPTISGDLGVSSDQGTWVITSFAVANAISVPLTGWLTDRIGQVRLF 86 F +VL+ + NV++P I+ D WV T+F + +I + G L+D++G RL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 87 LASIILFVISSWMCGLSPT-LPFLLASRVLQGAVAGPMIPLSQSLLLASYPRAKAPMALA 145 L II+ S + + + L+ +R +QGA A L ++ P+ A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 146 LWSMTTLIAPVAGPILGGWISDNYSWPWIFYVNIPVGIAAAIATWSIYRTRESTVRRAPI 205 L + GP +GG I+ W ++ IP+ + + ++ + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPF-LMKLLKKEVRIKGHF 199 Query: 206 DGVGLALLVLWVGSLQIMLDKGKDLDWFASTTIIVLALIAIISFAFFVIWELTAEHPVVD 265 D G+ L+ VG + ML F ++ I +++++SF FV P VD Sbjct: 200 DIKGIILMS--VGIVFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 266 LSLFRMRNFSGGTIALSVGYGLYFGNLVLLPLWLQTQIGYTATDAG-LVMAPVGLFAILL 324 L + F G + + +G G + ++P ++ + + G +++ P + I+ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 325 SPLTGKFLPRTDPRYIATAAFLIFALCFWMRSRYTTGVDEWSLMLPTFVQGIAMAGFFIP 384 + G + R P Y+ ++ F S + ++ FV G ++ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTV 368 Query: 385 LVSITLSGLPGHRIPAASGLSNFVRIMCGGIGTSIF 420 + +I S L A L NF + G G +I Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 71.4 bits (175), Expect = 8e-15 Identities = 53/183 (28%), Positives = 72/183 (39%), Gaps = 29/183 (15%) Query: 476 VMGHVDHGKTSLLDYIRRAKVAAGEAG------------------GITQHIGAYHVETPR 517 V+ HVD GKT+L + + A E G GIT G + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 518 GVVTFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAISHAKAGGVPIVVAI 577 V +DTPGH F A R D IL+++A DGV QT+ + G+P + I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 578 NKIDKPEANPDRVKQE----LVAEGVV-------PEEYGGDSPFVPVSAKTGAGIDDLLE 626 NKID+ + V Q+ L AE V+ P + G DDLLE Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 627 NVL 629 + Sbjct: 188 KYM 190
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 65.2 bits (159), Expect = 6e-14 Identities = 79/380 (20%), Positives = 127/380 (33%), Gaps = 72/380 (18%) Query: 12 TLALASGAAL-AADSSVTLYGIADTFIQYLGNGGAHSFAERSGGSSTSV------FGLTG 64 +AL A AA + VTLYG ++ + + S + T + G G Sbjct: 5 LIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKG 64 Query: 65 TEDLGGGLRVRFVLENGFNVNNGSLYLDSTAMFVRQSWIGLQHDRYGTLSFGRQYGPGFY 124 EDLG GL+ + +E ++ + RQS+IGL+ +G L GR Sbjct: 65 QEDLGNGLKAIWQVEQKASIAGTD-----SGWGNRQSFIGLKGG-FGKLRVGRLNSV--- 115 Query: 125 LVYPTDPFGLNDATSLYSG--NMATIDRRTLATQYDTGRADNSILYQSPVLGGWRLRAMY 182 + T D+ S Y G +A + R + S+ Y SP G Y Sbjct: 116 -LKDTGDINPWDSKSDYLGVNKIAEPEARLI-----------SVRYDSPEFAGLSGSVQY 163 Query: 183 AFASSVTQPLRRTNGNEFGATLSYSGHGLYAGIGYGNQRSGTLSFPGLPAALDVPSAQYF 242 A + R N + A +Y G + G +R + ++ Q Sbjct: 164 ALNDNA----GRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENV-----NIEKYQIH 214 Query: 243 GAALGYRWGIVNFQFHYTYSRPDDPSPGSLTARLDSAHPYSVVQFGATIAATVSD----- 297 GY + + D +S Q +AAT++ Sbjct: 215 RLVSGYDNDALYASV---AVQQQDAKLVEENYSHNS-------QTE--VAATLAYRFGNV 262 Query: 298 TIEVAVVH---RNVRGAHDNAI--GAELGIDHSLSKRTSVYARAGWIRNNGSSTASWSGV 352 T V+ H + + N +G ++ SKRTS AGW++ + Sbjct: 263 TPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESK----- 317 Query: 353 SVSAPGATQVLAGVGITHRF 372 GVG+ H+F Sbjct: 318 ------FVSTAGGVGLRHKF 331
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.046 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query: 277 VPTLIRELGVADPRAIGLYTVIPNAFGIVAMLVYGRHSDRRNEQRLHWALAFVVAALGFV 336 +P + + + T F I VYG+ SD+ +RL L F + F Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTA-VYGKLSDQLGIKRL---LLFGIIINCFG 92 Query: 337 ALGRTVQHS-LPWTIAA---LAFGGSALVSSTPIFWAMATRYFPKGRAAAGIAFVNSLAS 392 ++ V HS I A G +A + + A RY PK + S+ + Sbjct: 93 SVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA---RYIPKENRGKAFGLIGSIVA 149 Query: 393 LSGASPALVGLVKAHT 408 + +G + AH Sbjct: 150 MGEGVGPAIGGMIAHY 165
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 120 bits (302), Expect = 4e-35 Identities = 81/261 (31%), Positives = 122/261 (46%), Gaps = 12/261 (4%) Query: 4 NSLRLAGKRAFITGAAGGLGSAIASRMTEHGARVFLTD-NGDAAALARLADRINGACGEQ 62 N+ + GK AFITGAA G+G A+A + GA + D N + + + E Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 63 VAWSAVQDVRDEARWQALLAEAADAMGGVSVLVNNAGVGSRGALASIAQNEWRRVMEVNV 122 DVRD A + A MG + +LVN AGV G + S++ EW VN Sbjct: 62 FP----ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNS 117 Query: 123 ESIMLGCKHAMPYLRDAQPASIVNISSVAAFRVDPDLIAYNTSKAAVAMLTKSIAIDCTR 182 + + Y+ D + SIV + S A + AY +SKAA M TK + ++ Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 183 NRVDVRCNSVHPAYVRTGMVAAVF-EQLGDEAATR----ELTRHIPMGRLGEPDDVAYAV 237 ++RCN V P T M +++ ++ G E + IP+ +L +P D+A AV Sbjct: 178 Y--NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235 Query: 238 LYLASDESRFVTASELVVDGG 258 L+L S ++ +T L VDGG Sbjct: 236 LFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.3 bits (76), Expect = 0.002 Identities = 66/355 (18%), Positives = 121/355 (34%), Gaps = 35/355 (9%) Query: 38 MMRDMHLSPTQ---FGMLGSAFYLLYSIAGVAGGVLTRYVKTKWILLALAAVWAAVQFPM 94 ++RD+ S +G+L + + L+ G L+ + +LL A A M Sbjct: 31 LLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIM 90 Query: 95 ATPVGFGTLLVCRVLLGAGEGPAYPVALHAVYKWFDDHQRSVPTSIVQTGAPIGV-VVAA 153 AT L + R++ G G VA + D +R A G +VA Sbjct: 91 ATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDER--ARHFGFMSACFGFGMVAG 147 Query: 154 PALTAIVAHYSWRAAFLALGVVGLVWGAIWLVWGEEGRGDLREHAAARAPAAENVLGALP 213 P L ++ +S A F A + + E R A N L + Sbjct: 148 PVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREAL---NPLASFR 204 Query: 214 YRRLLLDRTVVVVTAQWFLAALIAVIGLTWGAVYLTSVLGYGPKATGWIFAIQVAVQVPV 273 + R + V + A +F+ L+ + ++ + G A Sbjct: 205 WARGM--TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLA--------A 254 Query: 274 GLAINALSQSLLGRGVSTR------IARGLFCSGCCMIGALAYFAVLTGLSPVAKVAWLT 327 +++L+Q+++ V+ R + G+ G A T + L Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLGMIADGT----GYILLAFATRGWMAFPIMVLL 310 Query: 328 IGGAFVM-QVNAFGPQIVAEMTPASQRGTVIAVSVSIASTAGVLGPILLGAVMDA 381 G M + A + V E ++G + ++ S ++GP+L A+ A Sbjct: 311 ASGGIGMPALQAMLSRQVDE----ERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.022 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 21 RVLEPLDLSIGAGETLVLLGPSGCGKTTTLRLIAGL----DTPDAGGTIAFGDDDVTAL 75 RV+EP ++VL G G GK+T + + GL DT GT G D + Sbjct: 587 RVMEP---GCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT---GKDSYEQI 639
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 47.6 bits (113), Expect = 5e-08 Identities = 59/361 (16%), Positives = 122/361 (33%), Gaps = 52/361 (14%) Query: 48 SAFPQGASWIGAVPTATQLGYAAGMFLLAPLGDRFDRRTLILLQMAGLSVALIAAA---S 104 + P +W V TA L ++ G + L D+ + L+L + + S Sbjct: 45 NKPPASTNW---VNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHS 101 Query: 105 APSLVVLAAASLAIGVLATIAQQAVPFAAEIAPPAERGHAVGTVMSGLLIGILLARTAAG 164 SL+++A G A A V A I P RG A G + S + +G + G Sbjct: 102 FFSLLIMARFIQGAGAAAFPALVMVVVARYI-PKENRGKAFGLIGSIVAMGEGVGPAIGG 160 Query: 165 FVAEYFGWRAVFGASVAALVVLAVVIVLRLPRSSPTSTL--------------------S 204 +A Y W + + ++ + ++ L S Sbjct: 161 MIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTS 220 Query: 205 YGKLLGSMW--HLVVELRGLREAS------------------LTGASLFAAFSAFWPVLT 244 Y + ++ ++ +R+ + L G +F + F ++ Sbjct: 221 YSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVP 280 Query: 245 LLLAGPPFHLGPQAAG--LFGIVGAAGALAAPYAGRFADTRGPRAIISLAIALLAVSFVI 302 ++ L G + + + G D RGP ++++ + L+VSF+ Sbjct: 281 YMM-KDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLT 339 Query: 303 FA-LSGTSLVGLVIGVIVLDVGVQAAQIS-NQSRIYALKPEARSRVNTVYMVCYFIGGAL 360 + L T+ + I ++ + G+ + + +LK + ++ F+ Sbjct: 340 ASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399 Query: 361 G 361 G Sbjct: 400 G 400
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 33.1 bits (75), Expect = 0.004 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 562 FNLG-LDPDKAREFHDETLPKDSAKVAHFC--SMCGPHFCSMKITQDVREFAAQQGVSEA 618 F LG + P + R E P + + S CG H + +T + E Q ++ A Sbjct: 265 FTLGDMQPGEHRTITVEFCPLKRGRATNIATVSYCGGHKNTASVTTVINEPCVQVSIAGA 324 Query: 619 D 619 D Sbjct: 325 D 325
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 25.1 bits (54), Expect = 0.048 Identities = 13/48 (27%), Positives = 22/48 (45%) Query: 34 AAYASRVIARTPARMRIRMTIHAAYEANRRDAAPCTTARETHASAARR 81 AAY ++ + ++IRM A +A+ AA + A A R+ Sbjct: 186 AAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRK 233
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.7 bits (72), Expect = 0.002 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 26/124 (20%) Query: 6 LNIALFGATGMIGSRIAAEAARRGHRVTAL-------------SRRPGAAGAGITAKAAD 52 + + GA G IG ++ GH+V + +R A G D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 53 LFD---PASVAAALPGHDVVASA------YGPKQDDA---ANVVAAVKALVEGARRAGLK 100 L D + A+ V S Y + A +N+ + ++EG R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLN-ILEGCRHNKIQ 119 Query: 101 RVVV 104 ++ Sbjct: 120 HLLY 123
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.9 bits (67), Expect = 0.004 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 64 HAAQALDQVASTVSQQIDAAKAGIASAASAV---PPLSA--SGLASAAQAQIDAAASAVV 118 A+D +T+S + + +GI++AA+ P+SA + ++A+ A+ Sbjct: 359 KETGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGILEASKQAMF 418 Query: 119 AHAASEAGAKLAEAGKK 135 H AS+ +AE KK Sbjct: 419 EHVASKMADVIAEWEKK 435
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 30.7 bits (69), Expect = 0.006 Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 57 SRITATLVSAGFLFQLPDSERFVLTASVLELSHGF 91 S+ T+ LVSAG+L +++ V TAS + L H F Sbjct: 314 SKRTSALVSAGWLQGGKGADKIVSTASAVVLRHKF 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 1e-08 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 11/127 (8%) Query: 90 GEMPVVLSALGTVTPLANV-TVKTQLSGYLQSVAFKEGQIVKKGDLLAQIDPRP------ 142 G++ +V +A G +T +K + ++ + KEG+ V+KGD+L ++ Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTL 137 Query: 143 -YQVALENAEGTLARDQALLATARLDLKRYRTLLSQ---DSIASQTVDTQASLVKQYEGT 198 Q +L A R Q L + L+ L + +++ + V SL+K+ T Sbjct: 138 KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197 Query: 199 VKTDQAA 205 + + Sbjct: 198 WQNQKYQ 204 Score = 37.1 bits (86), Expect = 1e-04 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 14/176 (7%) Query: 144 QVALENAEGTLARDQALLATARLDLKRYRT--LLSQDSIASQTVDTQASLVKQY-EGTVK 200 + A+ E L + L++ + L +++ T + ++ + + T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 201 TDQ--AAVDSAKLNLTYARIVAPVSGRV-GLRQVDPGNYVTPGDTNGIVVITQLQPMSVI 257 + + + I APVS +V L+ G VT +T ++V P Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV-----PEDDT 365 Query: 258 FTTSEDNLPQILKQVNAGQ--KLSVTAYNRNNTIPLE-TGSLETLDNQIDTSTGTV 310 + + + +N GQ + V A+ L LD D G V Sbjct: 366 LEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLV 421
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 821 bits (2122), Expect = 0.0 Identities = 289/1034 (27%), Positives = 503/1034 (48%), Gaps = 29/1034 (2%) Query: 4 SRIFILRPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQVQTFYPGASPEVMTSSV 63 + FI RP+ +L +M+AG +A+ LP+A P + P + V YPGA + + +V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLERQFGQMPSLNQMSSQS-SAGASVITLQFSLDLPLDIAEQEVQAAINAAGNLLPSD 122 T +E+ + +L MSS S SAG+ ITL F DIA+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPAPPIYAKVNPADAPVLTLAVTSKTLPLTQ--VQDLTDTRLAMKISQIAGVGLVSLSGG 180 + I + + ++ S TQ + D + + +S++ GVG V L G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 NRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNFDGP------TRAYTINANDQ 234 A+RI + L +Y + D+ + N G G +I A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LTSADQY-NSAVVAYKNGRPVMLTDVAKVVAGSENTKLGAWVNSEPAIILNVQRQPGANV 293 + +++ + +G V L DVA+V G EN + A +N +PA L ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IATVDAIKAQLPKLQETLPAALDVQIVTDRTTMIRAAVRDVQFELMLSVVLVVLVMYLFL 353 + T AIKA+L +LQ P + V D T ++ ++ +V L +++LV LVMYLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 ANIYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENIARY 413 N+ AT+IP+++VP+ L+GT A++ G+S+N L++ + +A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 -VEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472 +E+ EA K QI ++ + + L AV IP+ F G G ++ +F+IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAIVSLTLVPMMCAKLLRHSPPPESH---RFEARVHRTIDWVIARYAVALEWVLNRQRA 529 +S +V+L L P +CA LL+ F + T D + Y ++ +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 530 TLVVALLTLALTALLYVFVPKGFFPAQDTGVIQAITQAPQSVSYGAMAERQQTLASEILK 589 L++ L +A +L++ +P F P +D GV + Q P + + + LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 590 D--PNVDSLTSFIGVDGSNITLNSGRMLINLKPRDERS---ETAAQIIRDLQQRVANVTG 644 + NV+S+ + G S N+G ++LKP +ER+ +A +I + + + Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 645 ISLFMQSVQDLTIDSTVSPTQYQFMLTSPNA---DEFATWVPKLVTRLQQEPS-LADVAT 700 F+ I + T + F L D +L+ Q P+ L V Sbjct: 660 --GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 701 DLQSNGQSVYIEIDRASAARFGVTPATVDNALYDAFGQRIVSTIFTQSNQYRVILESEPK 760 + + +E+D+ A GV+ + ++ + A G V+ + ++ ++++ K Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 761 DQHYVQSLNDIYLPSAGGGQVPLSSIATFHERPSPLLVSHLSQFPSTTISFNLAPGASLG 820 + + ++ +Y+ SA G VP S+ T H + + PS I APG S G Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 821 EAVKAIQAAEKEIGLPGSFQTRFQGAALAFQASLSNQLFLILAAVVTMYIVLGVLYESYI 880 +A+ ++ + LP + G + + S + L+ + V +++ L LYES+ Sbjct: 838 DAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 881 HPITILSTLPSAGVGALLALMITGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAERVE 940 P++++ +P VG LLA + D+ ++G++ IG+ KNAI++++FA + E Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 941 GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000 GK EA A +R RPILMT+LA +LG +PL + +GAGS + +GI + GG++ + + Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1001 LTLFTTPVIYLGFD 1014 L +F PV ++ Sbjct: 1016 LAIFFVPVFFVVIR 1029
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 754 bits (1948), Expect = 0.0 Identities = 273/1102 (24%), Positives = 499/1102 (45%), Gaps = 95/1102 (8%) Query: 3 LSRPFITRPVATTLLALGVALAGLFAFVKLPVSPLPQVDFPTISVQASLPGASPETVATS 62 ++ FI RP+ +LA+ + +AG A ++LPV+ P + P +SV A+ PGA +TV + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTSPLERHLGSIADVTEMTSTST-VGNARIILQFGLNRDIDGAARDVQAAINAARADLPA 121 VT +E+++ I ++ M+STS G+ I L F D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 ALKSNPTYRKVNPADSPIMIVSLTSDTA--SPARLYDAASTVLQQSLSQIDGIGQVTVSG 179 ++ + S +M+ SD + + D ++ ++ +LS+++G+G V + G Sbjct: 121 EVQ-QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SANPAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEFGPQ------HYQLYTND 233 + A+R+ L+ L Y + DV L N G + P + + Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QASQASQYRDLVV-AYRNGAGVRLSDLSEVVDSVEDLRNLGLSNGKRAVLVILYRSPGAN 292 + ++ + + +G+ VRL D++ V E+ + NGK A + + + GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIDTIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLKDTEHTLLIAVSLVVMVVFLF 352 +DT ++A L +L P + V D + ++ S+ + TL A+ LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGFVVDDAIVVLENIAR 412 L+N RATLIP++AVP+ ++GTF + G+SI+ L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAI 471 + E+ P +A ++ ++ +++ L AVF+P+ GG G ++R+F++T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 AVSLAVSLTVTPMMCARLL--PERHEAREEGRFARFLERCFARMQRGYERSLSWALSRPL 529 A+S+ V+L +TP +CA LL +G F + F Y S+ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LILLILFATIGLNVYLYVIVPKGFFPQQDTGLMIGGIRADQATSFQAMKQKFTEMMRIVQ 589 LLI + V L++ +P F P++D G+ + I+ + + ++ ++ Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 SN--PNVKSAAGFTG----GTQTNSGFMFVTLKDRSER---KVSADQVIQQLRGPLSRVA 640 N NV+S G G N+G FV+LK ER + SA+ VI + + L ++ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 641 GASTFLQAAQDIRVGGRQSNAQYQFT-LLGDSSAELYKWGP-ILTEALQKRPELTDVNSD 698 I G + ++ G L + +L A Q L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 QQQGGLEAMVTIDRATAARLGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 + + + +D+ A LG+ + I+ T+ A G V+ + + ++ K+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 WQSPEMLKQVWISTSGGSASGSQTTNAAAGTFVATAAGTSSAGTAATSAAAIASDSARNQ 818 PE + ++++ + A G V +A + Sbjct: 779 RMLPEDVDKLYVRS-------------ANGEMV--------------PFSAFTTSHWVYG 811 Query: 819 ALNSIASSGKSSASAGAAVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 + +G S + S+ ++ + ++ LP Sbjct: 812 SPRLERYNGLPSMEIQGEAAPGTSSGDAMALME--------------------NLASKLP 851 Query: 879 PGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 G+ G + Q P L+ + + V++ L Sbjct: 852 AGIGY------------------DWTGMSYQERLSGNQ----APALVAISFVVVFLCLAA 889 Query: 939 LYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKKNAIMMVDFAI 998 LYES+ P++++ +P VG LLA LF + + ++G++ IG+ KNAI++V+FA Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 999 DQTRNHGKSSFDAIREACLLRFRPIMMTTMAALLGALPLAFGSADGAELRAPLGIAIAGG 1058 D GK +A A +R RPI+MT++A +LG LPLA + G+ + +GI + GG Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1059 LIMSQVLTLYTTPVVYLYMDRL 1080 ++ + +L ++ PV ++ + R Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031 Score = 100 bits (250), Expect = 2e-23 Identities = 85/507 (16%), Positives = 171/507 (33%), Gaps = 33/507 (6%) Query: 2 NLSRPFITRPVATTLLALGVALAGLFAFVKLPVSPLPQVDFPTISVQASLP-GASPETVA 60 N + L+ + + F++LP S LP+ D LP GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TSVTSPLERHLGSIAD----VTEMTSTSTVGNAR----IILQFGLNRDIDGAARDVQAAI 112 + + +L + V + S G A+ + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAARADLPAALKSNPTYRKVNPADSPIMIVSLTSDT-----ASPARLYDAASTVLQQSLS 167 + A+ +L + + L A + +L + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 168 QIDGIGQVTVSGSAN-PAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEFGPQH 226 + V +G + ++E++ + G+ L D+ +++A + + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 227 YQLYT---NDQASQASQYRDLVVAYRNGAGVRLSDLSEVVDSVEDLRNLGLSNGKRAVLV 283 +LY L V NG V S + V L NG ++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEI 826 Query: 284 ILYRSPGANIIDTIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLKDTEHTLLIAVS 343 +PG + D A + L + LPA I T + + + + V+ Sbjct: 827 QGEAAPGTSSGD----AMALMENLASKLPAGIGYD-----WTGMSYQERLSGNQAPALVA 877 Query: 344 LVVMVVFLFL----RNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGFV 399 + +VVFL L +W + + VP+ I+G A L D ++ L+ G Sbjct: 878 ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937 Query: 400 VDDAIVVLENI-ARHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGR 458 +AI+++E + GK ++A R +L S++ + LP+ + G Sbjct: 938 AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997 Query: 459 LFREFALTLSLAIAVSLAVSLTVTPMM 485 + + + + +++ P+ Sbjct: 998 AQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 62.5 bits (152), Expect = 8e-12 Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 1/168 (0%) Query: 924 LILAALLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLI 983 L A +L +V+ + ++ + +P +G L F + + + G++L I Sbjct: 344 LFEAIMLVF-LVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 984 GIVKKNAIMMVDFAIDQTRNHGKSSFDAIREACLLRFRPIMMTTMAALLGALPLAFGSAD 1043 G++ +AI++V+ +A ++ ++ M +P+AF Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 1044 GAELRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLRVWGEKRRNRR 1091 + I I + +S ++ L TP + + + Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 71.4 bits (175), Expect = 5e-16 Identities = 72/345 (20%), Positives = 116/345 (33%), Gaps = 57/345 (16%) Query: 24 AQSSVTLYGIVDTGVQYYNNAAGGGSVAGMPTLTGEVP---SRFGLRGVEDLGGGYRTFF 80 A + VTLYG + GV+ + A G+ A + S+ G +G EDLG G + + Sbjct: 17 AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIW 76 Query: 81 VLENGFAMNSGALNYGGRLFGRQANLGIESPYGTLTLGRQMNMSMLVLLNADVIGP---- 136 +E + RQ+ +G++ +G L +GR + VL + I P Sbjct: 77 QVE----QKASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNS----VLKDTGDINPWDSK 128 Query: 137 ----SIHSMASFDSYLPNARSDNALGYLGRFGGLTLGGTYSTGRDGAGPAGPSATNCAGN 192 ++ +A ++ L + R D+ F GL+ Y+ + S Sbjct: 129 SDYLGVNKIAEPEARLISVRYDSP-----EFAGLSGSVQYALNDNAGRHNSES------- 176 Query: 193 VPGDPVACRQYTMMVAYDAPQFGAAASY-DVMHGGTGASAPLSSP-------GYTDTRTI 244 Y Y F H + + GY + Sbjct: 177 ----------YHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALY 226 Query: 245 VDAYVKFGIAKLGAGWIRRNTAAAVHSQSDLFFAGGTLYATPALSFDAQALRYLLRGRFD 304 V+ AKL N+ V + F TP +S+ A + Sbjct: 227 ASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGN----VTPRVSY-AHGFKGSFDATNY 281 Query: 305 SNL---FVARANYSLSKRTMVYASAGYMMNSALGTSAVAAGGTVG 346 +N V A Y SKRT SAG++ + V+ G VG Sbjct: 282 NNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVG 326
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 165 bits (419), Expect = 1e-50 Identities = 85/353 (24%), Positives = 148/353 (41%), Gaps = 54/353 (15%) Query: 6 TILVTGGAGYIGSHTAVELLDNGYDVVIVDNLVNSKAESVR--RIERITGKQPAFHQVDV 63 LVTG AG+IG H + LL+ G+ VV +DNL + S++ R+E + FH++D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 64 CDEAALAKVFDAHPITGTIHFAALKAVGESVAKPLEYYQNNLGGLLTVLKVMRARNVKQF 123 D + +F + AV S+ P Y +NL G L +L+ R ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 124 VFSSSATVYGVPERSPIDES----FPLSATNPYGQSKLIAEQI------LRDLEVSDPSW 173 +++SS++VYG+ + P P+S Y +K E + L L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELMAHTYSHLYGL------- 171 Query: 174 RIATLRYFNPVGAHASGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 233 LR+F G P G P ++ + A+ + + + V+ G Sbjct: 172 PATGLRFFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMK 214 Query: 234 RDYIHVVDLAKGHIAALDALVKRDASF---------------VVNLGTGQGYSVLDVVRA 278 RD+ ++ D+A+ I D + D + V N+G ++D ++A Sbjct: 215 RDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQA 274 Query: 279 FEKASGRPVPYEIVARRPGDVAECYANPQAAADIIGWRATLGLDDMCADHWRW 331 E A G ++ +PGDV E A+ +A ++IG+ + D + W Sbjct: 275 LEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.5 bits (61), Expect = 0.008 Identities = 6/26 (23%), Positives = 11/26 (42%) Query: 73 DYVHEHPWTSIGIAAGVGVLIGLLIN 98 + H PW + ++IG +N Sbjct: 6 ELAHGLPWLYFSLVFLFSLMIGSFLN 31
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.8 bits (98), Expect = 1e-07 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 1 MARRAGFTLLELMIVLAIVGLLAGWGIPSYREHMARIHRASAVSALYRAAHYLET--LDV 58 ++ GFTLLE+M+V+ I+G+LA +P+ + + + AVS + + L+ LD Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 59 G-LPRAVP--EALAHAP 72 P E+L AP Sbjct: 64 HHYPTTNQGLESLVEAP 80
>PilS_PF08805#PilS N terminal Length = 185 Score = 29.1 bits (65), Expect = 0.014 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Query: 1 MNAERRMRAH---TLLEVLIAMLVGLLVLAAAGALY 33 ++A R+ TL+EVL+ + V +++ A+A LY Sbjct: 16 LSARRKKEQDKGATLMEVLLVVGVIVVLAASAYKLY 51
>PilS_PF08805#PilS N terminal Length = 185 Score = 33.8 bits (77), Expect = 9e-05 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 8/129 (6%) Query: 4 ARNSSRGTSLLEAILAIALLAIVMLAVAGSQLS--MARAQRATVWRERALWLADARLEYR 61 + +G +L+E +L + ++ ++ A A S + Q + +A+ + Sbjct: 21 KKEQDKGATLMEVLLVVGVIVVL-AASAYKLYSMVQSNIQSSNEQNNVLTVIANMKSLKF 79 Query: 62 RAARSGDGGVATLAAASLPDGSTAIDSGPGGVQFAIVAWRGERTVAPSQAQCGNAVPSAQ 121 + + + TL A L D+ + W G T+ S + V A Sbjct: 80 QGRYTDSNYIKTLYAQGLLPSDMIADTTGASAK---NPWGGSVTITTSSDKYSFNVVEAN 136 Query: 122 PP--SCVRI 128 P +C+ + Sbjct: 137 VPQKNCMAM 145
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 26.8 bits (59), Expect = 0.046 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 17 GFTLVELMVA---IAIAAGLGLYAVPVFDQWRMRERVDARARTLLGALSFARAEATRLGV 73 GFTL+E+M+ + ++AG+ L A P + + L GV Sbjct: 5 GFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFGV 64 Query: 74 RV 75 V Sbjct: 65 SV 66
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.3 bits (221), Expect = 2e-23 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 15/236 (6%) Query: 2 IVFVTGASAGFGAAIARAFVKGGHRVVATARRKERLDAL-AAELGDALLP--LELDVRDR 58 I F+TGA+ G G A+AR G + A E+L+ + ++ +A DVRD Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 59 AAVEAVPAALPAEFAALDVLVNNAGLALGVEPAHKASLDEWHTMIDTNCTGLVTVTHALL 118 AA++ + A + E +D+LVN AG+ L H S +EW N TG+ + ++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PGMIERGRGHIFNIGSVAGSYPYAGGNVYGATKAFVRQFSLNLRADLLGTPLRVTDIEPG 178 M++R G I +GS P Y ++KA F+ L +L +R + PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 LCGGTEFSNVRYRGDNEKAANVYANVQ------PL----MPEDIADTVYWIATRPA 224 T+ + +N + +++ PL P DIAD V ++ + A Sbjct: 189 -STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243
>SECA#SecA protein signature. Length = 901 Score = 34.5 bits (79), Expect = 0.002 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 366 AQARVVDEIAHDLTLPHPMQRLLQGDV-----GSGKTVVAALAAAQAIDAGYQAALMAPT 420 A RV D+ L M L + + G GKT+ A L A G ++ Sbjct: 74 ASKRVFGMRHFDVQLLGGM-VLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVN 132 Query: 421 EILAEQHARKLRGWLEPLGVSVAWLAGSLKAKDKRAAIEA 460 + LA++ A R E LG++V + A KR A A Sbjct: 133 DYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAA 172
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 79.9 bits (197), Expect = 3e-18 Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 7/237 (2%) Query: 382 KGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLG 441 + V + E G + G + + L A A + E ++GP + Sbjct: 91 REDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDPALKITSFE--SVGPKVS 148 Query: 442 ADNIKMGVHSVIWGFCAIAVFM-IAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPG 500 + + V S++ I ++ + + F + +V+ L ++LL V + +++Q L Sbjct: 149 GELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQLKFDLTT 208 Query: 501 IAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWA---TILDSNVTTLIA 557 +AA+ G +I+ V++ +R+RE L + L + T++ +TTL+A Sbjct: 209 VAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTG-MTTLLA 267 Query: 558 GLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGSRKKLKSLAIGQVW 614 + +L +G +R F G+ T +S+V+ ++ IV R K K + + Sbjct: 268 LVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKKDPSDKFF 324
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 320 bits (821), Expect = e-111 Identities = 93/316 (29%), Positives = 167/316 (52%), Gaps = 14/316 (4%) Query: 1 MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60 ++ + + F R ++V +A+V GL+ ++F GGT I + A Sbjct: 5 LKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAID 64 Query: 61 LEPVRATLGKLGYADAQVQNFGTSR------NVLIRLQLKEGLTSAQQ--------SDQV 106 + RA L L D + +IR+Q++E A+ ++V Sbjct: 65 VGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKV 124 Query: 107 MTALKAQSPDVTLQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGII 166 TAL A P + + E VGP+V EL + +L + I+ Y+ +RFEW++A+ ++ Sbjct: 125 ETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVV 184 Query: 167 ANLHDVVIILGFFAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRRERKMTVPE 226 A +HDV++ +G FA Q +F L +AA+L + GYS+N++VV+FDR+RE + + M + + Sbjct: 185 ALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRD 244 Query: 227 VINHAITTTMSRTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSL 286 V+N ++ T+SRT++T +T + ++ M +GG + F A+ G+ G YSSV+VA ++ Sbjct: 245 VMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNI 304 Query: 287 AMWLGIKREDLIKEKK 302 +++G+ R K+ Sbjct: 305 VLFIGLDRNKEKKDPS 320
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.7 bits (85), Expect = 1e-04 Identities = 51/265 (19%), Positives = 91/265 (34%), Gaps = 38/265 (14%) Query: 70 FMRPLGAIVLGAYADRAGRKAALTLSILLMMAGTLIIAVLPTYETIGIAAPLILVAARLM 129 M+ A VLGA +DR GR+ L +S+ I+A P +L R++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 130 QGFSAGGEFGSATAFLAEHVPGR-RGFFASWQVASQGLTTLLAAGFGTVLNAQLTAAQMA 188 G + G A A++A+ G R + A G + G + M Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---------MG 155 Query: 189 AWGWRVPFFFGLLLGPVAYYI-------RKKVDETPEFLAAESTASPLR--DTFKSHKAR 239 + PFF L + + K + P A + + R A Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAAL 215 Query: 240 LVAAIGAVVLGTV-ATYLVLFMPTYGVKQLGLAPSAAFAAILVVGVIQ-----MAFAPLV 293 + ++G V A V+F G + + ++ G++ M P+ Sbjct: 216 MAVFFIMQLVGQVPAALWVIF----GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271 Query: 294 GHWSDRYGRVRVMLAPALGFLVLIY 318 +R + M+A G+++L + Sbjct: 272 ARLGERRALMLGMIADGTGYILLAF 296 Score = 31.7 bits (72), Expect = 0.005 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 17/137 (12%) Query: 284 VIQMAFAPLVGHWSDRYGRVRVMLAPALGFLVLIYPAFAYLVAHPGFGTLIALQVLLAVL 343 ++Q A AP++G SDR+GR V+L G V ++A F ++ + ++A + Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAV-----DYAIMATAPFLWVLYIGRIVAGI 108 Query: 344 MTGYFAALPGLLSEVFPVQTRTTG---MSLAYNIAVTIFGGFGPFIIAWLIKATGMKTAP 400 A ++++ R MS + + G + +P Sbjct: 109 TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM---------GGFSP 159 Query: 401 SFYLMFAAVLSLAALVV 417 AA L+ + Sbjct: 160 HAPFFAAAALNGLNFLT 176
>FLAGELLIN#Flagellin signature. Length = 507 Score = 49.3 bits (117), Expect = 2e-08 Identities = 51/366 (13%), Positives = 107/366 (29%), Gaps = 12/366 (3%) Query: 20 QAQLAQLYQQISSGVSLSTAADNPLGAAQAVQLSMTSATLSQYATNQNVALSSLQKEDQA 79 Q+ L+ +++SSG+ +++A D+ G A A + + L+Q + N N +S Q + A Sbjct: 21 QSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTEGA 80 Query: 80 LTTVNDLLNTIHSSVMHAGDGSLSDSDRSALATQLQGYRDQLLTLANSTDGAGNYLFAGY 139 L +N+ L + + A +G+ SDSD ++ ++Q +++ ++N T G + + Sbjct: 81 LNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQD 140 Query: 140 QSTTAPFANGTGGGVVYSGDRGARQVQIADTRTIAQGDDGASVFLSVPMLGSQPVPAAGA 199 G + + + + G DG +V + Sbjct: 141 NQMKIQVGANDGETI---------TIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKN 191 Query: 200 ANQGTATIGAVTITDPSAATNAHTFTITFGGTSAAPTYTVTDETVAPPTTTAPQPY-AAG 258 + A T + + Sbjct: 192 VTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251 Query: 259 TAIALGNGLSVPVSGTPSPNDTFSVTPAPQAGTDVFATLDTMIAALKVPIGSDTVAAAKL 318 T + T + T T KV + Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLT 311 Query: 319 ANAMTTGTTKLDN--TMTNILTVQASVGGREQEIQAMQAVNQTNTLQVTSNLADLTSTNM 376 +T G +D ++ + V G+ + + + +N S Sbjct: 312 VADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKIT 371 Query: 377 VSTISQ 382 V+ Sbjct: 372 VNGAEY 377
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 225 bits (574), Expect = 1e-67 Identities = 149/441 (33%), Positives = 235/441 (53%), Gaps = 9/441 (2%) Query: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVNTV 62 ++L+N +SGLNAA L T NIS+ GY+ + + A+A+ + G++ GV Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 TVQRQYSQYLSDQLNTAQTQSGALSTWYSLVAQLNNYIGSPTAGISTAITNYFTGLQNVA 122 VQR+Y ++++QL AQTQS L+ Y +++++N + + T+ ++T + ++FT LQ + Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 123 NNAADPTVRQTAMSNAQTLADQITAAGQQYDALRQSVNTQLTSTVSQINTYTAQIAQLNQ 182 +NA DP RQ + ++ L +Q Q + VN + ++V QIN Y QIA LN Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 183 QIA--AASSQGQPPNQLMDQRDLAVSNLSSLAGVQVVRNSDG-YSVFLAGGQPLVVADKS 239 QI+ G PN L+DQRD VS L+ + GV+V G Y++ +A G LV + Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 240 YQLATVTSPSDPSELTVVSQGIAGANPPGPNQYLPDTSLSGGTLGGLLAFRSQTLDPAQA 299 QLA V S +DPS TV N P + L+ G+LGG+L FRSQ LD + Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKL-----LNTGSLGGILTFRSQDLDQTRN 295 Query: 300 KLGAIAASFAAQVNAQNALGIDLSGNVGSNLFAVGAPTVYTDTRNQGDATLSVSFSNASQ 359 LG +A +FA N Q+ G D +G+ G + FA+G P V +T+N+GD + + ++AS Sbjct: 296 TLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASA 355 Query: 360 PTTGDYTLSFDGTQYTLTDRATGSVVGTSNTMPGSIGGLDFSVSS-GTMQAGDQFTVLPT 418 DY +SFD Q+ +T A+ + + G + ++ GT D FT+ P Sbjct: 356 VLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPV 415 Query: 419 RGALDGFQLATSNGSAIAAAS 439 A+ + ++ + IA AS Sbjct: 416 SDAIVNMDVLITDEAKIAMAS 436 Score = 85.0 bits (210), Expect = 2e-19 Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 23/155 (14%) Query: 526 GALNGVTVSLSGAPADGDTFRIGPYAGGTN-----------------------DGTNALA 562 A +G+ ++ +G PA D+F + P + D N A Sbjct: 391 VAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQA 450 Query: 563 LSKLVTAKSFGNGTVTLTGAYASYVNDIGNAASQLKSSSAAQTALVGQITSAQQSVSGVN 622 L L + G + AYAS V+DIGN + LK+SSA Q +V Q+++ QQS+SGVN Sbjct: 451 LLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVN 510 Query: 623 QNEEAANLMQYQQLYQANAKVIQTAATLFQTVLGL 657 +EE NL ++QQ Y ANA+V+QTA +F ++ + Sbjct: 511 LDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 225 bits (575), Expect = 2e-74 Identities = 128/314 (40%), Positives = 184/314 (58%), Gaps = 23/314 (7%) Query: 6 GATDLTQRFALDVQGFDALRAQAKQSPQGGAKAVAGQFDAMFTQMMLKSMRDATPEGGLF 65 + L A D Q + L+A+A + P + VA Q + MF QMMLKSMRDA P+ GLF Sbjct: 3 SDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLF 62 Query: 66 DSHTSKMYTSMLDQQLAQQMSS-RGIGVADALMKQLMRNAGQGAGAAADLGAGFGAAGNE 124 S +++YTSM DQQ+AQQM++ +G+G+A+ ++KQ+ Q + AA + Sbjct: 63 SSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQM--TPEQPLPEEST-----PAAPMK 115 Query: 125 GSLAAMSAMANAYANAAANNGGLSRARGYSAGSALTPPLKGATGAPDADAFVDRLAGPAQ 184 L + N + + +A + +L D+ AF+ +L+ PAQ Sbjct: 116 FPLETVVRYQNQALSQL-----VQKAVPRNYDDSLPG---------DSKAFLAQLSLPAQ 161 Query: 185 AASAATGIPARFIVGQAALESGWGKREIRAADGSTSYNVFGIKATRGWTGRTVSALTTEY 244 AS +G+P I+ QAALESGWG+R+IR +G SYN+FG+KA+ W G TTEY Sbjct: 162 LASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEY 221 Query: 245 VNGTPRRVVAKFRAYDSYEHAMTDYANLLKNNPRYAGVLSASRSVEGFAQGMQKAGYATD 304 NG ++V AKFR Y SY A++DY LL NPRYA V +A+ + E AQ +Q AGYATD Sbjct: 222 ENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASA-EQGAQALQDAGYATD 280 Query: 305 PNYAKKLISIMQQI 318 P+YA+KL +++QQ+ Sbjct: 281 PHYARKLTNMIQQM 294
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.014 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%) Query: 17 IIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGKTEIAR---RLAKL 73 ++G++ A + + ++ + T +++ G +G GK +AR K Sbjct: 139 LVGRSAAMQEI------YRVLARLMQ------TDLTLMITGESGTGKELVARALHDYGKR 186 Query: 74 ADAPFIKI 81 + PF+ I Sbjct: 187 RNGPFVAI 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 2e-24 Identities = 33/127 (25%), Positives = 63/127 (49%) Query: 1 MSDNNFLVIDDNEVFAGTLARGLERRGYAVQQAHDKETALRLAAAGKFQFITVDLHLGDD 60 M+ LV DD+ L + L R GY V+ + T R AAG + D+ + D+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKEGADNYLAKPANVESILAALQTNAS 120 + L+ + +PD +LV++ + TA++A ++GA +YL KP ++ ++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EVQAEEA 127 E + + Sbjct: 121 EPKRRPS 127 Score = 45.2 bits (107), Expect = 5e-08 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 3/101 (2%) Query: 75 DARILVLTGYASIATAVQAVKEGADNYLAKPANVESILAALQTNASEVQAEEAIENPVVL 134 I+ + I + L+ VE + + + Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSG---LYDR 431 Query: 135 SVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAK 175 + +E+ I L N A L ++R TL++K+ + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.7 bits (103), Expect = 4e-07 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 202 IPVISPIGFGEDGLSYNINADLVAGKLATVLNAEKLVMMTNIPGVMDKEG----NLLTDL 257 +PVI G G+ I+ DL KLA +NA+ +++T++ G G L ++ Sbjct: 197 VPVILEDG-EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREV 255 Query: 258 SAREIDALFEDGT-ISGGMLPKISSALDAAKSGVKSVHI 295 E+ +E+G +G M PK+ +A+ + G + I Sbjct: 256 KVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII 294 Score = 36.0 bits (83), Expect = 1e-04 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%) Query: 53 GKTVVIKYGGNAMTEERLKQGF----------ARDVILLKLVGINPVIVHGGGPQI 98 GK VVI GGNA+ + K + AR + + G VI HG GPQ+ Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQV 57
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 2e-11 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 5/171 (2%) Query: 22 RARPKPGERRMLILQTLASMLEAPKREKITTAALAARLDVSEAALYRHFASKAQMYDGLI 81 + + + E R IL + + +A V+ A+Y HF K+ ++ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 82 EFIEETFFGLINQIAAKEPDGVLQA-RAIGMMLLNFAAKNPGMTRVLTGEALVGEHERLA 140 E E L + AK P L R I + +L ++ E Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 141 ERIDRMLERIEASVRQCLRVALAERTAAAGSGAPLPAGYDPAVRANLLVGY 191 + + + + + A LPA A ++ GY Sbjct: 124 AVVQQAQRNLCLESYDRI-EQTLKHCIEAKM---LPADLMTRRAAIIMRGY 170
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 144 bits (365), Expect = 2e-37 Identities = 219/939 (23%), Positives = 335/939 (35%), Gaps = 112/939 (11%) Query: 107 AMGLSVHGA--GSRIELQDSQVHTTGNSAYGLYLFNGSGAPNGASALLDNTTLNTLDDNA 164 AM L GA + + + + TG +G+++ G+ G TT+ A Sbjct: 20 AMALGALGAAPAAHADWNNQSIVKTGERQHGIHI---QGSDPGGVRTASGTTIKVSGRQA 76 Query: 165 AGVRMYGAGNRLDMAGGS------IDTLGREAYGIYV---GPGPGASIAVGDTRIRTVGA 215 G+ + L GS + G + V A A T Sbjct: 77 QGILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDD 136 Query: 216 FAPAIALGSDGNHAKLERIDVTTEGQESAALSQIGENTMTVADSTLRTNGVLAPAVDVRE 275 IAL G A+ D T +G + + G N +TV S + G+ A+ + Sbjct: 137 --DGIALYVAGEQAQASIADSTLQGAGGVQIER-GAN-VTVQRSAIVDGGLHIGALQSLQ 192 Query: 276 ----GAMTMARTDVITTGESSHGLYASRELALDAQTAQLDVADSRVTTQGLGAAGAIARD 331 + D T + G A+ + ++L + +T AAG A Sbjct: 193 PEDLPPSRVVLRDTNVTAVPASGAPAAVSVL---GASELTLDGGHITGGR--AAGVAAMQ 247 Query: 332 GAEVTVTGTAVETHGDKAIGAL---SVRDDSIASLVDSTVV-THGELARGVQASYGGLVD 387 GA V + + A GA+ +V ++ + GV S G V+ Sbjct: 248 GAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVS-GSSVE 306 Query: 388 LVDTTVRTEGERAAGAGIFGGELHLDGGSIVSAQGSAIEATTGL----------VRASRG 437 L + V AA G + + GGS+ + G+ IE + G Sbjct: 307 LAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAG 366 Query: 438 AHIEGGNGTLLAVAAKAGEPVHLLL-DNATARGNIV-NVPAEDGSPTPAVTNLALSRGAA 495 AH +G + EPV L L A A+G+IV + ++AL+ A Sbjct: 367 AHAQGK----ALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQAR 422 Query: 496 WEGATQAVRALSMQGGSQWTVTGDSAVQGVRLDGS-TIAFAAPA-GGAHKTLVVHGDYAA 553 W GAT+AV +LS+ + W +T +S V +RL ++ F PA G K L V + A Sbjct: 423 WTGATRAVDSLSIDNAT-WVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTV--NTLA 479 Query: 554 KDGKVVLNTVYGDDLAPSDKLVIDGGRASGNTALVVKRTSGDGATTKVGIPLVETRNGGT 613 G +N DL SDKLV+ ASG L V R SG + + LV+T G Sbjct: 480 GSGLFRMNVFA--DLGLSDKLVVMQD-ASGQHRLWV-RNSGSEPASANTLLLVQTPLGS- 534 Query: 614 TDAAAFALDAASDGYRKDFGTVSAGGYDYMLTRGGASGRADDWYLVSAAKPAPPEPPAPP 673 AA F L A+ G V G Y Y L G W LV A P P+P P Sbjct: 535 --AATFTL--ANKD-----GKVDIGTYRYRLAANGNG----QWSLVGAKAPPAPKPAPQP 581 Query: 674 QPPEPPAPPQPIDPETVPPKPEVVPPPVRAVAPEPDAYLANADAAILMPIHTLHERSDQT 733 P P P P P PP R ++ +A + + + + Sbjct: 582 GPQPPQPPQPQ------PEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSK 635 Query: 734 LRAETDENARDGAVWLRAQGLSTSLGGGNGSGGR-SVSGNGRLLHVGADMFRLEDGRGGS 792 E N G W R L G V+G +GAD GG Sbjct: 636 RLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAG----FELGAD--HAVAVAGGR 689 Query: 793 FRIGAMGLYASATSWSTRTLWNPVAQRYMPATARGSIDGYNAGLYATWYGNRDILTGPHV 852 + +G + Y R G D + G YAT+ + +G ++ Sbjct: 690 WHLGGLAGYTR-------------GDRGFTGDGGGHTDSVHVGGYATYIAD----SGFYL 732 Query: 853 DTWLMFGAYSNRIG-----GSLPSDSYRSRTLTASIEGGYSLGVYDDGRSRFFVEPAAQI 907 D L N G YR+ + AS+E G D +F+EP A++ Sbjct: 733 DATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADG----WFLEPQAEL 788 Query: 908 VYANYQAKGHDSPGGY-IGVQRSNDVLARIGVRVHGVTPISALQALRPFIEANWWHG-PG 965 + + G + + + VL R+G+ V ++ + ++P+I+A+ G Sbjct: 789 AVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDG 848 Query: 966 SHQLSVDGNPFELRMPRDRAEFKLGATGQLTRNLSVSAS 1004 + + +G + RAE LG L R S+ AS Sbjct: 849 AGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYAS 887 Score = 41.6 bits (97), Expect = 2e-05 Identities = 62/359 (17%), Positives = 107/359 (29%), Gaps = 28/359 (7%) Query: 100 VFSKGIGAMGLSVH----GAGSRIELQDSQVHTTGNSAYGLYLFNGSGAPNGASALLDNT 155 + GI +V + + T + LY+ A A A + ++ Sbjct: 101 LSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYV-----AGEQAQASIADS 155 Query: 156 TLNTLDDNAAGVRMYGAGNRLDMAGGSIDTLGREAYGIYVGPG---PGASIAVGDTRIRT 212 TL A GV++ G + + +I G + P + + + DT + Sbjct: 156 TLQG----AGGVQIE-RGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTA 210 Query: 213 VGAF-APAIALGSDGNHAKLERIDVTTEGQESAALSQIGENTMTVADSTLRTNGVLAPAV 271 V A APA + L+ +T G+ + + G APA Sbjct: 211 VPASGAPAAVSVLGASELTLDGGHITG-GRAAGVAAMQGAVVHL---QRATIRRGDAPAG 266 Query: 272 DVREGAMTMARTDVITTGESSHGLYASRELALDAQTAQLDVADSRVTTQGLGAAGAIARD 331 G G G +D + +++A S V LGAA + R Sbjct: 267 GAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRG 326 Query: 332 GAEVTVTGTAVETHGDKAIGALSVRDDSIASLVDSTVVTHGELARGVQASYGGLVDLVDT 391 G+ HG+ + R A+ + T+ + Sbjct: 327 ARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPV--- 383 Query: 392 TVRTEGERAAGAGIFGGELHLDGGSIVSAQGSAIEAT---TGLVRASRGAHIEGGNGTL 447 + G A I EL G+ + A+ + TG RA I+ + Sbjct: 384 KLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVM 442