>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.3 bits (104), Expect = 3e-06 Identities = 36/279 (12%), Positives = 78/279 (27%), Gaps = 33/279 (11%) Query: 845 KDEKREHNDSQENNRKQRRGRRSRRSNRQEGHAYKEQQDSADDIARIGYA---------- 894 +N E + N + ++ + IAR+ A Sbjct: 975 NGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEE-IARVDEAPVPPPAPATP 1033 Query: 895 ------AADNAAELDDVAEFNSYVA----------DEEAQVEAQVENQEKEQREGEGEKR 938 A+N+ + E N A +EA+ + Q E + E + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 939 SRGRGRRRSARTNASQKSEPRKSEQTYEEAVAEFEASPRRKRRTRGNSRSDHRPQPQDFL 998 + T ++ ++E+T E + SP++++ +++ + Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND--- 1150 Query: 999 PPAEHHSEEVKPEQRAEDKPKAAAKRARGRRRAV--RHTTAKAPQAAAEQVKTEETPTEE 1056 P + E D + A + + + V T T T+ Sbjct: 1151 -PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Query: 1057 TKVIRRGRKRAVRKVVARKAPQNGAGETSESAVQPKEKA 1095 T K R + ++ + + S+ A Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 42.4 bits (99), Expect = 1e-05 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 14/179 (7%) Query: 934 EGEKRSRGRGRRRSARTNASQKSEPRKSEQTYEEAVAEFEASPRRKRRTRGNSRSDHRPQ 993 E EKR++ N Q P S + E +A + +P P Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVP--SVPSNNEEIARVDEAP------------VPPPA 1029 Query: 994 PQDFLPPAEHHSEEVKPEQRAEDKPKAAAKRARGRRRAVRHTTAKAPQAAAEQVKTEETP 1053 P E +E K E + +K + A + R V +A + + ++ Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 1054 TEETKVIRRGRKRAVRKVVARKAPQNGAGETSESAVQPKEKAKVAKKADKKPEAAETPK 1112 +E + K KA V + K + +P+A + Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Score = 37.7 bits (87), Expect = 3e-04 Identities = 43/306 (14%), Positives = 88/306 (28%), Gaps = 23/306 (7%) Query: 85 AIIAKAALAKDTDAAAEAPAKKTTKRAVKKSTKKAAQEQTEDPTADEKLRNRVRKNVENE 144 IA+ A A P++ T A + E+ E + +N R+ + Sbjct: 1015 EEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQN--REVAKEA 1072 Query: 145 ISQIEEKVEAELVDAAEEQREEHQDRETRQDREVQQDTGTVDVEKLHEALVEAGDDFDED 204 S ++ + V + + +E Q ET++ T VEK +A VE + Sbjct: 1073 KSNVKANTQTNEVAQSGSETKETQTTETKE---------TATVEKEEKAKVETEKTQEVP 1123 Query: 205 DYAPVITPMPDDEPEVYDFAPIFMAPKLEKPAPRAQREDSRDDRDDREGDDSHKEESRGG 264 ++P + V A +PA + + + + E+ Sbjct: 1124 KVTSQVSPKQEQSETVQPQA---------EPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 265 GRRRGSRGTSRGRGGSDSRQDARTNTDEPELIEEPKAIKGSTRIEAQRRRRAELREKGRV 324 + + + + +P S+ R RR+ V Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234 Query: 325 RQHIVS--QAEFLARRESVERTMVVRDKERTDGAGIIT-QVGVLEDDLLVEHFVTTEAQA 381 S +A + + A + VG + + + E Q Sbjct: 1235 EPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQY 1294 Query: 382 SLIGNI 387 ++ + Sbjct: 1295 NVWVSN 1300 Score = 30.8 bits (69), Expect = 0.042 Identities = 33/234 (14%), Positives = 66/234 (28%), Gaps = 11/234 (4%) Query: 771 EEQENDAHEHKGRRPR---RERRKPEHDPQQHPAAVAMHRHEEAEEARAAASNDAESHVE 827 E+ E DA E + + + + Q + A + +E + + E + Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 828 QKTSIEDLVAGIIVNDDKDEKREHNDSQENNRKQRRGRRSRRSNRQEGHAYKEQQDSADD 887 K E V K+E +++ + + R + ++ D+ Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 888 IARIGYAAADNAAELDDVAEFNSYVADEEAQVEAQVENQEKEQREGEGEKRSRGRGRRRS 947 E V NS V + E A + + + + R R R Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 948 ARTNASQKSEPRKSEQTYEEAV--------AEFEASPRRKRRTRGNSRSDHRPQ 993 + S +S + ++ A + G + S H Q Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQ 1285
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.019 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 9/117 (7%) Query: 55 LHITQRTSFMLSGAQLGITITGLLIGYVAEPLVGRGLGELLGDAGVPVAVSVTIGTVAAL 114 T+++ + GA +GI + L ++ G G + + + ++ + + AL Sbjct: 428 KEATEKSMSQIQGALVGIAMV-LSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL 486 Query: 115 FISTIATMLFAELFPKNYTIAAPMKTALWLSTSTMWYLRIFGWLIHFFEYSSNAILK 171 + L A L K + W+ F ++ + S IL Sbjct: 487 ---ILTPALCATLLKPVSAEHHENKGGFFG-----WFNTTFDHSVNHYTNSVGKILG 535
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.9 bits (77), Expect = 0.002 Identities = 44/318 (13%), Positives = 95/318 (29%), Gaps = 46/318 (14%) Query: 323 ADDALDAQAADFAKMRDLLINSGSKLDELTQRTVDIRTRITQAEQTLAGLASKHPA---- 378 + A +Q K+++ + + L + D+ + L + Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 379 -----EALVSIEDNPHMATVSVGEAEKLLEQGRTLAAQPAGQQGGLVGIIRDSEHAIEVA 433 ++L + EK LE + + + L Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 434 DRLLSGVENA-------EANLAAAHSNLSALIAEVRGEIEEAQQLEAQGKKLGTD--ADW 484 ++ L G N L A + L A AE+ +E A A+ Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 485 EALGDVTSRAQQAVSAAEAGQATDPLGHYTTLIAIDSELDERLDAVREATATQARQLDLY 544 AL + ++A+ A ++ A +A Sbjct: 221 AALAARKADLEKALEGAMN------------------FSTADSAKIKTLEAEKAALEARQ 262 Query: 545 TQQMQAAESNIQAAEDVISTRGRVVGAQARTALADAKRLYAQAMQLKNSNLRGAIDASRQ 604 + +A E + + A+ +T A+ L A+ L++ + ++A+RQ Sbjct: 263 AELEKALEGAMNFSTADS--------AKIKTLEAEKAALEAEKADLEHQS--QVLNANRQ 312 Query: 605 AVAAAQTAARRAQDDIDS 622 ++ A+R A+ +++ Sbjct: 313 SLRRDLDASREAKKQLEA 330 Score = 32.3 bits (73), Expect = 0.007 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 34/304 (11%) Query: 324 DDALDAQAADFAKMRDLLINSGSKLDELTQRTVDIRTRITQAEQTLAGLASKHP--AEAL 381 + AL+ + ++ L R D+ + A ++K Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 382 VSIEDNPHMATVSVGEAEKLLEQGRTLAAQPAGQQGGLVGIIRDSEHAIEVADRLLSGVE 441 ++E ++ A E + +E Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIK--------------TLEAEKAALAARKADLE 231 Query: 442 NAEANLAAAHSNLSALIAEVRGEIEEAQQLEAQGKKLGTDADWEALGDVTSRAQQAVSAA 501 A + SA I + E + +A+ +K S + + A Sbjct: 232 KALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA--LEGAMNFSTADSAKIKTLEAE 289 Query: 502 EAGQATDPLGHYTTLIAIDSE---LDERLDAVREATATQARQLDLYTQQMQAAESNIQAA 558 +A + +++ L LDA REA + +Q + +E++ Q+ Sbjct: 290 KAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSL 349 Query: 559 EDVISTRGRVVGAQARTALADAKRLYAQAMQLKNSNLRGAIDASRQAVAAAQTAARRAQD 618 + K+L A+ +L+ +ASRQ++ A+R A+ Sbjct: 350 R-----------RDLDASREAKKQLEAEHQKLE--EQNKISEASRQSLRRDLDASREAKK 396 Query: 619 DIDS 622 ++ Sbjct: 397 QVEK 400
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 31.6 bits (71), Expect = 2e-04 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 4 NLSKVLITQPLESLEDLYAALGTIRGCDACMAPRNLDALADFLREHKVETIVASAWKLST 63 N+++V+ ++ ++LE AAL + G + M +AD H E IVA + LS+ Sbjct: 316 NVAQVIDSETADNLEKTTAALSILPGIGSVMG------IADGAVHHNTEEIVAQSIALSS 369 Query: 64 TDTAAVLEVLGD 75 A + ++G+ Sbjct: 370 LMVAQAIPLVGE 381
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 0.002 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 26/157 (16%) Query: 632 TAKIELLRAQLTQAKATARATAKQVQNLNRKMDVLRSQRDKAQQVLETSFQDIDTAS--- 688 T +E +A+A + V + + KA QV + ++D A+ Sbjct: 313 THPVEAAERNYERARAELNQANEDVARNQER-------QAKAVQVYNSRKSELDAANKTL 365 Query: 689 AEARRQDLQEQYDSLASSPEA------QALAAAHEQAKAKLKAARARLNAAQKNLGNVEG 742 A+A + +Q++ A P A Q ++A+ + +A +AA K + + Sbjct: 366 ADAIAE--IKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADA 423 Query: 743 ELERSTERRRSIGIVPDIKDQEIAKAVEDALHKGKRK 779 L + E R+ K ++ ++ E+ L+ K K Sbjct: 424 ALSSAMESRK--------KKEDKKRSAENNLNDEKNK 452 Score = 34.7 bits (79), Expect = 0.002 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 21/174 (12%) Query: 660 NRKMDVLRSQRDKAQQVLETSFQDIDTASAEARRQDLQEQYDSLASSPEAQALAAAH--E 717 N + V+R +D + S D+ + +RQD + + Q A H E Sbjct: 266 NTRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEENR--------RQQEWDATHPVE 317 Query: 718 QAKAKLKAARARLNAAQKNLGNVEGELERSTERRRSIGIVPDIKDQEIAKAV-------- 769 A+ + ARA LN A +++ + ++ + S D ++ +A A+ Sbjct: 318 AAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNR 377 Query: 770 --EDALHKGKRKLTIDDIDARRDEVQASLQNTA-RTATRRIEDANAKIVSVLHT 820 D + G R + + A+R + + + A A + DA+A + S + + Sbjct: 378 FAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMES 431
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 25.3 bits (55), Expect = 0.027 Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 27 ASAELGINRASLHAWVKKYG 46 A+ +GINR +L +KKYG Sbjct: 77 AALMMGINRGTLRKKLKKYG 96
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 0.003 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 20/135 (14%) Query: 33 QAFNMQRKQDKALIPIMLAAFLGMGLLFFLIGLLFNGQWFMLILGLG-IGALLAMWLFTR 91 ++ + ++A + ++ + L L ML++ LG +G LLA L Sbjct: 861 MSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATL--F 918 Query: 92 RLERDMYKKVEDQPGVAGWALEQQLRNTVGIVWKVKTA-VGVTRHQDLIHRVIGNAGVIF 150 + D+Y V L T+G+ K A + V +DL+ + G V Sbjct: 919 NQKNDVYFMV-------------GLLTTIGLS--AKNAILIVEFAKDLMEKE-GKGVVEA 962 Query: 151 VCEGDRKRLAPVLNT 165 R RL P+L T Sbjct: 963 TLMAVRMRLRPILMT 977
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.6 bits (82), Expect = 3e-04 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 7/169 (4%) Query: 1 MVAVAAAFSAWSILLPVVPLAVLESGGSATLAGASTGAFMATTVMTQ-IATP---RMLRS 56 + VA +++PV+P + + S + A G +A + Q P + Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVT-AHYGILLALYALMQFACAPVLGALSDR 69 Query: 57 FGYRPVMAASALLLGVPAFGHLLGNEAWVVLLFSALRGIGFGALTVAENALIAEITPPRL 116 FG RPV+ S V WV+ + + GI GA A IA+IT Sbjct: 70 FGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDE 128 Query: 117 LGKATGMIGVFIGFSQMLFLPAGIAMGQAWGFGTVYITAGIIGIVGFLM 165 + G + GF + G MG + + A + + FL Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLT 176
>SSPANPROTEIN#Salmonella invasion protein InvJ signature. Length = 336 Score = 31.2 bits (70), Expect = 0.012 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 12/103 (11%) Query: 206 GIGAAAAGASRLDEGVGKLQAGGEKAVTGID---KLDAGAGELNNGAGQLHDGTGR---- 258 G+ R+ E + K+ A EK+V I K+D A L++ L +G+ Sbjct: 84 GLHHNGKSELRIAEKLLKVTA--EKSVGLISAEAKVDKSAALLSSKNRPLESVSGKKLSA 141 Query: 259 ---LVQGVSELSTGAGRLDDGANKLATGSDKLLEGTGKLGEGA 298 V+ VSE++ A + D K G +K + G G EGA Sbjct: 142 DLKAVESVSEVTDNATGISDDNIKALPGDNKAIAGEGVRKEGA 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.010 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 4/80 (5%) Query: 118 LLVAEGFTVLAYTSDDPVAALRLEDAGASAVMPLGAPIGTGLGILNPHNIELIAARASVP 177 L G+ V ++ + G V + P +L + AR +P Sbjct: 22 ALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP----RIKKARPDLP 77 Query: 178 VLVDAGIGTASDAALAMELG 197 VLV + T A A E G Sbjct: 78 VLVMSAQNTFMTAIKASEKG 97
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 31.2 bits (70), Expect = 0.001 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 17/125 (13%) Query: 7 AVIDVNALGVTLGARAAYPYLKKTPGSQLINIASIAGCYGIPDVGVYAATKAYVQSMTET 66 A VN+ GV +R+ Y+ ++ + S + YA++KA T+ Sbjct: 111 ATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKC 170 Query: 67 LDLEWRRDKIRVLDINP----------LWAKTPISDVKSK---TVTRLGVNLT----PDD 109 L LE IR ++P LWA ++ K + G+ L P D Sbjct: 171 LGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSD 230 Query: 110 VAQAI 114 +A A+ Sbjct: 231 IADAV 235
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 40.4 bits (94), Expect = 4e-07 Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 7/113 (6%) Query: 2 KSIFISGGCGGFGLAVARVFRNEGYIVGLGDLRPP------ADESLLCDGITFYELDVTK 55 K FI+G G G AVAR ++G + D P + + DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 56 PESWDAALSEFTKLTGGRLDILDNNAGIIDSATIAESEPARIRAVIDVNALGV 108 + D + + G +DIL N AG++ I A VN+ GV Sbjct: 69 SAAIDEITARIEREMG-PIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 98.8 bits (246), Expect = 2e-24 Identities = 79/407 (19%), Positives = 163/407 (40%), Gaps = 19/407 (4%) Query: 18 LMIALLVAVFAFQLNASMLAPALATMEVELNATPAQIGMTQTAFFTAAALFSLFLPRWGD 77 ++I L + F LN +L +L + + N PA TAF ++ + + D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 78 LIGRRKVLIGMMIVTGIGCLVAALAPN-VTVLFLGRLIQGVAGPTVPLCLIILRQHVPNE 136 +G +++L+ +I+ G ++ + + ++L + R IQG P ++++ + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 137 KQYALLLGVITSINGGIGGVDAIAGGWLAEHFGFRSIFWVMAVFCVAAALALSFGVKEST 196 + G+I SI GV GG +A + + + + + + + KE Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKE-- 192 Query: 197 AETTPKMDWLGVLPLAVSIGALLTAFNEAGKLADANWFLVIALFAIGIIGIVAFYNIEKR 256 D G++ ++V I + FL++++ + I F ++ Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTTSYSIS-----FLIVSVLSFLI-----FVKHIRK 242 Query: 257 VKTPLVSIEYLGQRRTWALLLTTLLTMTGVFAIMNGLLPNLAQDATHGAGMSAGVVSWWT 316 V P V LG+ + + + + G A ++P + +D +S + Sbjct: 243 VTDPFVDPG-LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKD---VHQLSTAEIGSVI 298 Query: 317 LTPYALAGLVFGPVAGILAGKFGYKIVLQIGIAATIIGVAGATFLVGSTSNLAYLGISTF 376 + P ++ ++FG + GIL + G VL IG+ + A+FL+ +TS + I F Sbjct: 299 IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIII-VF 357 Query: 377 VGITYAGIANIMLNGLGVVLSPADNQGYLPGMNAGAFNLGAGISFAI 423 V + ++ + L + + +N +F L G AI Sbjct: 358 VLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF-LSEGTGIAI 403
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 4e-14 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 7/154 (4%) Query: 2 KVGLVDDQVLFLHGIAQIISSQPDMDVIWQANDGEDALTQCAATPADVVLMDVQMPVRDG 61 + + DD + Q +S DV ++ AA D+V+ DV MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 ISATAEIASSLPETKVIILTTFDDEDYVVAGLRAGASGFVLKDAEPEELLSALRTVYRGD 121 I + P+ V++++ + + GA ++ K + EL+ + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR----- 117 Query: 122 AVISPRATKRLVHSMRDDSTDTLSISGADRRVLQ 155 A+ P+ + D + S A + + + Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.002 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 15/200 (7%) Query: 16 EATEASAPVKKTAKKTAKKTAKKTAKKTAKKTAKKTAKKTAKKTTRKTAK--KSAKKTVR 73 + T + P A + + + + + A T +TT A+ K KTV Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 74 KSAQKAAAAPEEKQEKLETASDELEDEL----VDDADQDDADFDPDNADMDDDEFGDAED 129 K+ Q A + +E + A ++ V + + + + + Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 130 ELDADEDDED---------DDEDSSSVWDEEESATLRQARKDAQLTASADSVRAYLKQIG 180 +++ ++ E E S +V + E A + + S + A +Q Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 181 KVALLNAEQEVSLAKRIEAG 200 K N EQ V+ + + G Sbjct: 1173 KETSSNVEQPVTESTTVNTG 1192
>PF07520#Virulence protein SrfB Length = 1041 Score = 27.6 bits (61), Expect = 0.023 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Query: 90 LWVDKHDKFLPHWRFNDSEQPHGLAEQLLA 119 LW D D L WRF + P+ L + A Sbjct: 389 LWDD--DAVLQDWRFQNHHDPNNLPRPVRA 416
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 26.1 bits (57), Expect = 0.027 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 4/37 (10%) Query: 5 LLLVLAILIFLP----SFMTMRKQRERQNKLSELQQN 37 ++ + I P + +M K R Q K+ +++ Sbjct: 360 IITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRER 396
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 66.8 bits (163), Expect = 2e-13 Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 12/195 (6%) Query: 415 LIAGIVGFILVVLYSLYYFRALAGVSLITLVASGILTYGALVLLGRWIGYSLDLSGIAGL 474 L I+ LV+ L RA +LI +A ++ G +L GYS++ + G+ Sbjct: 344 LFEAIMLVFLVMYLFLQNMRA----TLIPTIAVPVVLLGTFAIL-AAFGYSINTLTMFGM 398 Query: 475 VIGVGATADSFVVYYERIKDELLEGRT-FRSATTKAWERSRATIVTGNAVTLIGAVIVYF 533 V+ +G D +V E ++ ++E + + AT K+ + + +V V + + F Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 534 LA--IGEV-KGFAFTMGLTTAFDLVVSFLIMAPLM--QLIGARPAAAKPSMNGLGGIYAL 588 G + + F+ T+ A ++V+ LI+ P + L+ A + G G + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVA-LILTPALCATLLKPVSAEHHENKGGFFGWFNT 517 Query: 589 VEERRARGYYAKSGK 603 + Y GK Sbjct: 518 TFDHSVNHYTNSVGK 532
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 215 bits (548), Expect = 5e-69 Identities = 62/320 (19%), Positives = 133/320 (41%), Gaps = 16/320 (5%) Query: 15 RLYEDEGGYDFIGRSKTWYAITAALVAASILAIAIRGFSLSLDFEGGTKLNMPAADLVAE 74 +L ++ +DF + ++ AS++ + G + +DF+GGT + + + Sbjct: 6 KLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDV 65 Query: 75 QVGDTFEEAIGVEPEMVQIVG------AGDSRTLEITSERLSQEQVDTARQAIFEQYHPK 128 V E + + ++ V + I + Q Q + Sbjct: 66 GVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVE 125 Query: 129 DSEGKATPDA--IGSSTVSESWGSAITQRMLLAMAVFLATATVYVAVRLQRDMAFAAILA 186 + P +V + + ++ Y+ VR + A A++A Sbjct: 126 TALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVA 185 Query: 187 LILDGVIIAGIYALFGLEVSPAVIIGLLTVLTFSIYDSVIVFDKVNENTEGFQGQRKKTY 246 L+ D ++ G++A+ L+ + LLT+ +SI D+V+VFD++ EN + Sbjct: 186 LVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLREN---LIKYKTMPL 242 Query: 247 GELANLAVNQTVMRSISTSIISVLPIIALFVIAVWLMGIGTLRDLALIQLIGVIEGIFSS 306 ++ NL+VN+T+ R++ T + ++L ++ + + G +R + GV G +SS Sbjct: 243 RDVMNLSVNETLSRTVMTGMTTLLALVPMLIW-----GGDVIRGFVFAMVWGVFTGTYSS 297 Query: 307 LFLATPLLVSIANRRKSVKK 326 +++A +++ I R KK Sbjct: 298 VYVAKNIVLFIGLDRNKEKK 317
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 27.1 bits (60), Expect = 0.010 Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Query: 59 EWRYRVGTYRILALIHESTITTEVFAAGRRD 89 EW++ +G ++AL+H+ +T +FA + Sbjct: 175 EWQFALGA--VVALVHDVLLTVGLFAVLQLK 203
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 9e-05 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%) Query: 28 TPDGTPQ-ECTGAAIAPEWILTAAHCAEGPYSDPDVSPERPQG 69 T +G + + +LT H + + DP P Sbjct: 95 VEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSA 137
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 48/253 (18%), Positives = 90/253 (35%), Gaps = 39/253 (15%) Query: 133 LQEFNADFQDH--LVGQDSVKSELLAAMYQLTRQSVDGPVVVMFYGPSGVGKTETAKFIS 190 + D QD LVG+ S + +Y++ + + + +M G SG GK A+ + Sbjct: 126 PSKLEDDSQDGMPLVGR----SAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 191 RLTGGLLFRKQ--F----------SMLHSEKF--ASYVFGGSHQEPSLALDLMERESSVI 236 R+ F ++ SE F F G+ + + E + + Sbjct: 182 DYGK----RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGT--L 235 Query: 237 LFDEFDKASSVFHSAFYELFDEGVLEDKNYRVEVGRPL-----IICTSNYGSESAVK-KA 290 DE + + +G V P+ I+ +N + ++ Sbjct: 236 FLDEIGDMPMDAQTRLLRVLQQGEYT----TVGGRTPIRSDVRIVAATNKDLKQSINQGL 291 Query: 291 LGEALYSRFDAF-IEFYPLSDFEVEKIIDRLVDVKFKELTHKEASILNADELKINLKSHS 349 E LY R + + PL D E I D LV ++ + + D+ + L Sbjct: 292 FREDLYYRLNVVPLRLPPLRD-RAEDIPD-LVRHFVQQAEKEGLDVKRFDQEALELMKAH 349 Query: 350 KQLGNIRKLSSVI 362 GN+R+L +++ Sbjct: 350 PWPGNVRELENLV 362
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 29.2 bits (65), Expect = 0.020 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 12/102 (11%) Query: 114 AQRVVRQY----VTSRPRTDAGRAIYKLALKL---TNINTVKEAAEWTARLQEFHSVYRT 166 + +R++ R + +A + L + +I+T A TA H + T Sbjct: 122 GESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFET 181 Query: 167 YMNQKTRN--PDTGAMTFTHDRVRKAYNSLANLERNKWLFGY 206 + ++ +T D L N + N W Y Sbjct: 182 FAEERKEQYKINTAGCKTNEDFYADI---LKNKDFNAWSKEY 220
>adhesinb#Adhesin B signature. Length = 310 Score = 29.4 bits (66), Expect = 0.012 Identities = 10/40 (25%), Positives = 19/40 (47%) Query: 88 IAEIHQDISVELGEDPGLVKDGVEAHLQELLAEHIDTLGE 127 IA+I ++I+ + +V G + H E L E + + Sbjct: 43 IADITKNIAGDKINLHSIVPVGQDPHEYEPLPEDVKKTSQ 82
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 101 bits (252), Expect = 1e-25 Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 12/361 (3%) Query: 22 REIWIMVSAAFLIALGYGLIAPLLPQFVVSFDVSMAAA---GMVVSIFSASRLVFAPSAG 78 R + +++S L A+G GLI P+LP + S G+++++++ + AP G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 79 SLVDRFGSRWVYLGGLLTVAVTTGLVAISQEYWHIVVFRALAGIGSTMFTVSAMGLIVKL 138 +L DRFG R V L L AV ++A + W + + R +AGI V+ I + Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADI 123 Query: 139 SPPSIRGKCSATYATAFLLGNVIGPLLGASLSFLGFRWPFVIYGLGVALAAVVVWILMP- 197 + R + + F G V GP+LG + PF L + L+P Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 198 AIEEDDPNATKLQPMKLNEAWHDTAFRAV--LTSNFAQGWINMGVRVSVLPLFAATVFHN 255 + + + + L V L + F + V ++ +F FH Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHW 243 Query: 256 GAAASGFALAVFAFGNAVV-LQFSGKWADTYGRRPLILIGLIGTGV-FVGLLGLADSVLV 313 A G +LA F +++ +G A G R +++G+I G ++ L + Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMA 303 Query: 314 LLVVSALAGASSGLINPAQTAAIGDVVGNQRSGGQVLSTFQMAGDFGQILGPIVVGGLAD 373 ++ LA G+ PA A + V +R GQ+ + I+GP++ + Sbjct: 304 FPIMVLLASG--GIGMPALQAMLSRQVDEERQ-GQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 374 Y 374 Sbjct: 361 A 361 Score = 51.4 bits (123), Expect = 3e-09 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 9/182 (4%) Query: 236 INMGVRVSVLPLFAATVFHNGAAAS--GFALAVFAFGNAVVLQFSGKWADTYGRRPLILI 293 + +G+ + VLP + H+ + G LA++A G +D +GRRP++L+ Sbjct: 19 VGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLV 78 Query: 294 GLIGTGVFVGLLGLADSVLVLLVVSALAGASSGLINPAQTAAIGDVVGNQRSGGQVLSTF 353 L G V ++ A L +L + + +G A I D+ + Sbjct: 79 SLAGAAVDYAIMATA-PFLWVLYIGRIVAGITGATGAVAGAYIADITD-GDERARHFGFM 136 Query: 354 QMAGDFGQILGPIVVGGLADY-----FGFAKAFAVCGLVAAMGVVAWTFSRETLAERKAI 408 FG + GP++ G + + F A A + ++ + E R+ Sbjct: 137 SACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREA 196 Query: 409 LK 410 L Sbjct: 197 LN 198
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.9 bits (212), Expect = 3e-22 Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 41/265 (15%) Query: 3 LENISAIVTGGASGLGAATAQALIQRGVRVTAFDLRAPEYDGVEFAE-----------VD 51 +E A +TG A G+G A A+ L +G + A D + + V + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 52 VTDAAAVREAVQAAQCADAPLRLAINCAGICPSARIFGRKGPHDP---DLFVKTININLM 108 V D+AA+ E + P+ + +N AG+ R G + + T ++N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-------RPGLIHSLSDEEWEATFSVNST 118 Query: 109 GTFHVMTAAAEAMATTEPVDEDGQRGVIINTASVAAFEGQVGQAAYAASKGAVHSLSITA 168 G F+ + ++ M D + G I+ S A + AAYA+SK A + Sbjct: 119 GVFNASRSVSKYM-------MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171 Query: 169 ARDLASQGIRVNAIAPGVVATPMM----------EQITPEFKQQLEATVQFPPRLAKAEE 218 +LA IR N ++PG T M EQ+ + + + +LAK + Sbjct: 172 GLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPL-KKLAKPSD 230 Query: 219 FAQLAISMAENN--YLNGETIRLDG 241 A + + ++ + +DG Sbjct: 231 IADAVLFLVSGQAGHITMHNLCVDG 255
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 32.7 bits (74), Expect = 7e-04 Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 10/145 (6%) Query: 22 RQREIFTALLTDFLAEGFESFTIDDATKRYRCSKSTIYALGKTRDAIIRRVLVSFFKEIT 81 ++ I L F +G S ++ + K ++ IY K + + + I Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 82 RRTA--PEANRATSAARALEDYFTAMTSALTPASTAFMR--------DLATEPVAQEVYA 131 + E + S +T + + V Q+ Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 132 LNTSGATQTIRTLLERGVAAGEFRA 156 + I L+ + A A Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPA 156
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 27.9 bits (61), Expect = 0.026 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 16/86 (18%) Query: 23 ATIIGDVEIGP------DSSVFYGCVLRADVGAIRLGARVNIQDNSV---IHEEADVACV 73 AT + V IGP DS+V YG A + +GAR + D V + +AD Sbjct: 95 ATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADA--- 151 Query: 74 LEDDVTVG---HMAMLHGTHVGAGTL 96 ++ V +G H+A HG + G Sbjct: 152 -KNSVAIGHSSHVAANHGYSIAIGDR 176
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 50.6 bits (121), Expect = 2e-08 Identities = 49/260 (18%), Positives = 93/260 (35%), Gaps = 32/260 (12%) Query: 500 LKDFSETE-GVVNAQIVATTDNMDAAQILITPTTGA-TDETTTETLEKLRGFKAEFEDNT 557 LKD + E G N ++A + AA + I TGA +T KL + F Sbjct: 262 LKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGM 321 Query: 558 GGTYGITGITPIFDD---ISQKLSDVLLP-YIAIVLGLAFIVLLLVFRSIWVPLIAAAGF 613 + +D + + +V+ + AI+L F+V+ L +++ LI Sbjct: 322 K-------VLYPYDTTPFVQLSIHEVVKTLFEAIML--VFLVMYLFLQNMRATLIPTIAV 372 Query: 614 GLSMAATFGVTVAIFQEGMFGIIDDPQPLLSFLPIILIGLTFGLAMDYQVFLVTRMREGF 673 + + TF + A FG ++ L + + L GL +D + +V + Sbjct: 373 PVVLLGTFAILAA------FGYS------INTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 674 VHGKTEG-NATSNGFKHGARTVTAAALIMISVFAAFMLIDL---PFIKTMGFALAVGVFM 729 + K AT + A+++ +VF + + + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 730 DAFVVRMMIIPATMFLLDKK 749 V +++ PA L K Sbjct: 481 SVLVA-LILTPALCATLLKP 499 Score = 40.2 bits (94), Expect = 3e-05 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 37/235 (15%) Query: 215 VIGLIVAAIVLLITFGSFVAAGMPLISAVVGVGVGILGVQLATIFTDSVSDMTPMLASMI 274 +++ +V+ + + A +P I+ V + + S++ +T M ++ Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGY---SINTLT-MFGMVL 400 Query: 275 GLAVGIDYALFIVARFRNELITSSGLNDLSPKELAQELKEMDKATRAHAMGMALGTAGSS 334 + + +D A+ +V E + + DK A ++ + Sbjct: 401 AIGLLVDDAIVVV-------------------ENVERVMMEDKLPPKEATEKSMSQIQGA 441 Query: 335 VVFAGATVVIA---LAALTIIGIPFLSTMAIAAAATVVVAVCVALTFIPGLLGLFGTKVF 391 +V + +A +I + + ++V VAL P L V Sbjct: 442 LVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVS 501 Query: 392 AGRVPGP--------KVPDPEDEKPTMGLKWVRRIRAHPWMHLIAGVLLLGILAL 438 A D T + + +L+ L++ + + Sbjct: 502 AEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG---STGRYLLIYALIVAGMVV 553 Score = 31.3 bits (71), Expect = 0.017 Identities = 36/197 (18%), Positives = 74/197 (37%), Gaps = 24/197 (12%) Query: 176 AEEMTAVTDVLKKYDDGDLTVKYGGNAFNGATEMNMVSEVIGLIVAAI--VLLITFGSFV 233 + M + ++ K G + + G ++ N ++ + + L + S+ Sbjct: 837 GDAMALMENLASKLPAG-IGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 234 AAGMPLISAVVGVGVGILGVQLATIFTDSVSDMTPMLASMIGLAVGIDYALFIVARFRNE 293 +S ++ V +GI+GV LA + +D+ M+ + + + A+ IV F + Sbjct: 896 IP----VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVE-FAKD 950 Query: 294 LITSSGLNDLSPKELAQE-----LKEMDKATRAHAMGM---ALGT-AGSSVVFAGATVVI 344 L+ G E L+ + + A +G+ A+ AGS A V+ Sbjct: 951 LMEKEG---KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVM 1007 Query: 345 ----ALAALTIIGIPFL 357 + L I +P Sbjct: 1008 GGMVSATLLAIFFVPVF 1024
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.1 bits (101), Expect = 2e-07 Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 1 MSSLRETKKQATRHVIADSVARLVVDEGVENLTVARIAEAAGVSPRTFHNYFSSASDALL 60 M+ + + Q TR I D RL +GV + ++ IA+AAGV+ + +F SD Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 72.5 bits (178), Expect = 3e-16 Identities = 70/383 (18%), Positives = 130/383 (33%), Gaps = 76/383 (19%) Query: 1 MKVAILGGDGFCGWPASLYLSDQGHDVIIVDNLSRRAIDTELGAESLTPIVSIEERIAAW 60 MK + G GF G+ S L + GH V+ +DNL+ D L + R+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLN-DYYDVSLK----------QARLEL- 48 Query: 61 HEVSGKTIEFRTFDVAQDYDALLEFLTTERPDAVVHFAEQRAAPYSMKSSRTKRYTVDNN 120 ++ +F D+A D + + + + + V + A YS+++ D+N Sbjct: 49 --LAQPGFQFHKIDLA-DREGMTDLFASGHFERVFISPHRLAVRYSLENPHA---YADSN 102 Query: 121 INATHNLLTAIVESGEDIHVAHLGTMGVYGYGTAGMEIPEGYLDVQVKVEGQEPIEQSIL 180 + N+L + H+ + + VYG ++P Sbjct: 103 LTGFLNILEGCRHNKIQ-HLLYASSSSVYGLNR---KMPFS--------------TDDS- 143 Query: 181 YPSNPGSVYHMTKVLDQHLFAYYAKNDELRITDLHQGIIWGTHTEQTLKDERLINRFDYD 240 +P S+Y TK ++ + Y+ L T L ++G Sbjct: 144 -VDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPW----------------- 185 Query: 241 GDYGTVLNRFLIQAGIGYPLTVHGTGGQTRAFIHIRDMVRCVELALENPPAKGDRV---- 296 G L +F G + V+ G R F +I D+ + + P + Sbjct: 186 GRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVET 245 Query: 297 ----------KIINQMTETHRVR--DLAELVAKLSG--AKLAMVPNPRKESAENELHVSN 342 ++ N + + V D + + G AK M+P + E Sbjct: 246 GTPAASIAPYRVYN-IGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTK- 303 Query: 343 NTFLELGLEP-TTLSEGLLHEVE 364 + +G P TT+ +G+ + V Sbjct: 304 ALYEVIGFTPETTVKDGVKNFVN 326
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 61.2 bits (148), Expect = 2e-11 Identities = 44/283 (15%), Positives = 83/283 (29%), Gaps = 14/283 (4%) Query: 32 RLIYPPVTKQQVTQTQKASVAPKPQNAQAPKTQQPKTQQSAQPNTGAKPDTSKQSTKPET 91 L P V K+ QT + P N QA P N + P Sbjct: 979 DLYNPEVEKRN--QTVDTTNITTPNNIQA---DVPSVPS----NNEEIARVDEAPVPPPA 1029 Query: 92 PKQGASKAGPTAAGAAAAGISATKAKAEAQNPPAKQHPKQPNAGKNKQPEGKPANAAQAS 151 P + A + + K + +A A+ A N + + AQ+ Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 152 QTAQASQPAGKPQAQAQPKAQAPQSQAKQTQPQAQAQQPQKPRPEAEQANRPASAAKPGT 211 + +Q + K + + + ++TQ + P+ E + +P + Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 212 TAKAAGAEATANSANHAATEQEIARALARRSQSVGTPSQQQLKAPKPPREAQKHPNRSAQ 271 E + + A TEQ A+ + + T S + + Q Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQ-PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Query: 272 TSDAKPNNKPIAKPTAKEA-SIATAPAAFVQPPKNEPRPQQSA 313 + N++ KP + S+ + P + A Sbjct: 1209 PTV---NSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 56.2 bits (135), Expect = 6e-10 Identities = 49/301 (16%), Positives = 92/301 (30%), Gaps = 27/301 (8%) Query: 75 NTGAKPDTSK----QSTKPETPKQGASKAGPTA-AGAAAAGISATKAKAEAQNPPAKQ-- 127 + +P+ ++ ++K + S G T GA + + + NP ++ Sbjct: 930 DKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEKRN 989 Query: 128 ------HPKQPNAGKNKQPEGKPANAAQA-SQTAQASQPA-GKPQAQAQPKAQAPQSQAK 179 + PN + P N A A PA P + A+ + ++K Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESK 1049 Query: 180 QTQPQAQAQQPQKPRPEAEQANRPASAAKPGTTAKAAGAEATANSANHAATEQEIARALA 239 + Q + + + + A + T A++ + + TE + + Sbjct: 1050 TVE--KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 240 RRSQSVGTPSQQQLKAPKPPREAQKHPNRSAQTSDAKPNNKPIAKPTAKEA-SIATAPAA 298 + ++ + Q + + K A+P + KE S A Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167 Query: 299 FVQPPKNEPR--PQQSAKPATPVMVDSFPHEPEAL---ATPP----ESKEVKHNRRARLR 349 QP K Q + T +S PE T P ES NR R Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSV 1227 Query: 350 Q 350 + Sbjct: 1228 R 1228 Score = 52.4 bits (125), Expect = 8e-09 Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 20/244 (8%) Query: 2 KGTKNAEKSEKDGSNAAKAAGKNADGKKKPRLIYPPVTKQQVTQTQKASVAPKPQNAQAP 61 K ++A ++ AK A N + + ++ + TQT + + + Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 62 KTQQPKTQQSAQPNTGAKPDTSKQSTKPETPKQGASKAGPTAAGAAAAGISATKAKAEAQ 121 K + KTQ+ + + P + + ET + A A ++ + +++ Sbjct: 1113 KVETEKTQEVPKVTSQVSP----KQEQSETVQPQAEPAREN-----DPTVNIKEPQSQTN 1163 Query: 122 NPPAKQHPKQPNAGKNKQPEGKPANAAQASQTAQASQPAGKPQAQAQPKA-QAPQSQAKQ 180 + P + + +QP + + + + P A QP ++ K Sbjct: 1164 TTADTEQPAKETSSNVEQPVTE--STTVNTGNSVVENPENTTPATTQPTVNSESSNKPKN 1221 Query: 181 TQPQAQAQQPQKPRPEAEQANRPASAAKP---GTTAKAAGAEATANS-----ANHAATEQ 232 ++ P P +N ++ A T A ++A A + A Q Sbjct: 1222 RHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQ 1281 Query: 233 EIAR 236 I++ Sbjct: 1282 HISQ 1285
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.3 bits (78), Expect = 9e-04 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 35 LVLVGPSGCGKSTSLRMLAGLE-PTDIGSILIDGKD 69 +VL G G GKST + L GL+ +D + GKD Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 28.8 bits (64), Expect = 0.034 Identities = 5/25 (20%), Positives = 13/25 (52%) Query: 53 GDCTGTLVADQWVLTARHCLESVNN 77 +G +V +LT +H +++ + Sbjct: 102 FIASGVVVGKDTLLTNKHVVDATHG 126
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.8 bits (67), Expect = 0.031 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Query: 234 GGISAIAQWTSRMVPLMSVIYAVGVLAVLGANFTDIPHAASLIVSGAFNPDSISGGVIGV 293 G+S + + P + I V V L A + S+++ P I G ++ Sbjct: 859 TGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLV---VPLGIVGVLLAA 915 Query: 294 MIIGIQRALFSNVAGVGTAGLA 315 + + ++ V + T GL+ Sbjct: 916 TLFNQKNDVYFMVGLLTTIGLS 937
>PERTACTIN#Pertactin signature. Length = 922 Score = 33.2 bits (75), Expect = 0.006 Identities = 16/40 (40%), Positives = 19/40 (47%) Query: 160 PDPEPEPQPDPTEPQPSPEPEPGTSVTPAEPTAVDPATAP 199 P P+P PQP P PQP P+P P + PA P Sbjct: 573 PAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQP 612
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.9 bits (64), Expect = 0.023 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 195 EPPTTPRTTPPTTPSTPP-PGDTPPGETPPPRETPGSGNEKEREQGA--LAMTGVQIIGL 251 + + TP P P P T + N+ ++ L TG Sbjct: 456 AKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANPF 515 Query: 252 VLAAVALMGAGLLMLLITKKRKQ 274 AA + A + + K++++ Sbjct: 516 FTAAALTVMATAGVAAVVKRKEE 538
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 27.2 bits (60), Expect = 0.004 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 1 MSSSSSQAPATRR----LTTTGAVALAVATAATLATAPV 35 + SQ +R L+T+ A A +A+A TLA +P+ Sbjct: 283 VGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPL 321
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 30.3 bits (68), Expect = 0.011 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 1/104 (0%) Query: 31 TLIGSGGGDILAGGKGANQAVAAARQGVSVSFVGAVGDDAYAGPAMELLEASGVDLSHVE 90 L G G D L GG G + V + Q +V+ + D ++L Sbjct: 369 VLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFV 428 Query: 91 HLKSTTTGL-AVIEVAADGENTIVVVPGANARVDAEFVQQHAQA 133 + T G +++ A T + + A V+ QA Sbjct: 429 QDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQA 472
>PF06704#DspF/AvrF protein Length = 129 Score = 29.4 bits (66), Expect = 0.013 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 491 EIAGHKD-VIVHCQVGLRGHNAARI--LTNLGYDVANLDGGYL 530 E+ H + VI HC+VG AA + L +L +DVA + G + Sbjct: 44 EMPDHSEMVIFHCRVGRSPDRAADLQKLLSLNFDVARMHGSWF 86
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 27.9 bits (62), Expect = 0.026 Identities = 11/38 (28%), Positives = 14/38 (36%) Query: 2 LSQSVASEIRDAISAGEFMPGQQLSEVKAAERFSCSRN 39 L + E+R G F G +V AA RF Sbjct: 252 LREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGG 289
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.3 bits (169), Expect = 5e-17 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 16/193 (8%) Query: 6 RRDQIATAALDLFDQRGYHGTGMEDIAKAVGMRASSLYNHYKSKQELLAEVTVSAMEELL 65 R I AL LF Q+G T + +IAKA G+ ++Y H+K K +L +E+ + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 66 RANAAALAGVTGSEEKILATMRAHVI---FHATHAKRVRVVNN-------ELNNLEEPHK 115 A G +L + HV+ + + + E+ +++ + Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 116 SVVLQLRRDYVARWMNVVDEGSFQA----ENLKIACWALIDMGIGVATWFSPDGPYTAEE 171 ++ L+ + ++ A I I + W + ++ Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME--NWLFAPQSFDLKK 189 Query: 172 LGDMYGQFALRQL 184 Y L Sbjct: 190 EARDYVAILLEMY 202
>PF06580#Sensor histidine kinase Length = 349 Score = 26.4 bits (58), Expect = 0.040 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 11/76 (14%) Query: 75 WWKAGLSAFFLLVGFTGFSADPGT-----SLFFIIPSAWYLLMSAIYRNELHKRRWL--- 126 W+ G+ + GF++ G+ +F I S L+++ YR+ + ++ WL Sbjct: 13 WYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLN 72 Query: 127 ---LVWAVAFACRIIF 139 ++ V AC +I Sbjct: 73 MGQIILRVLPACVVIG 88
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 63.7 bits (155), Expect = 4e-13 Identities = 71/345 (20%), Positives = 120/345 (34%), Gaps = 26/345 (7%) Query: 53 MGLLPLIAGDFGITEDTAS---TLITVYAIGVVVGAPVISAVTGKLPRRRLIILLIGFLL 109 M +LP + D + D + L+ +YA+ APV+ A++ + RR ++++ + Sbjct: 25 MPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAA 84 Query: 110 VGNLLTALAPNYATLLAARFIAGLPHGAYFSVANLSAAAMAPKGGRGKAMAAIGMGLAVA 169 V + A AP L R +AG+ GA +VA A + R + + Sbjct: 85 VDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFG 143 Query: 170 TVMGVPAAQALGQNLGWHAAYFLVVILALATMVLLYFLFPHMTEMPSTDISTELGALKNL 229 V G P L HA +F L + FL P E + N Sbjct: 144 MVAG-PVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP---ESHKGERRPLRREALNP 199 Query: 230 QVWLSVIMGIVGFGGMFAVYTYITWTMTEVAGM------PDRWTWAVLMVYGIGMTIGNG 283 G+ + AV+ +I + +V DR+ W + GI + Sbjct: 200 LASFRWARGMTVVAALMAVF-FIMQLVGQVPAALWVIFGEDRFHWDATTI-GISLAAFGI 257 Query: 284 VG--------GALSDRNTEYSILFALVFLVATSLVFYFGAHNLWAATIAFGFLAFFGAVL 335 + G ++ R E L + T + A W A LA G + Sbjct: 258 LHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM 317 Query: 336 IPSLQLRL-MIVAGDAQTLASALNQSALNIANAMGAALGGLVVGA 379 P+LQ L V + Q + ++ + +G L + A Sbjct: 318 -PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 51.9 bits (124), Expect = 1e-09 Identities = 55/290 (18%), Positives = 102/290 (35%), Gaps = 46/290 (15%) Query: 63 PERVATVGWANHEVPLALGVVPVGMSKTTWGDDDNNGVLPWTEEKLKELGAETPVLFDET 122 P R+ + W E+ LALG+VP G++ T + P + + ++G T Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTI--NYRLWVSEPPLPDSVIDVGLRTEP----- 87 Query: 123 DGIPFEQVADTQPDVILASYSGLTQEDYDTLSKIAPVVAYP----DVPWTTSLEDMIEMN 178 E + + +P ++ S + L++IAP + P + + + EM Sbjct: 88 ---NLELLTEMKPSFMVWSAGYGPS--PEMLARIAPGRGFNFSDGKQPLAMARKSLTEM- 141 Query: 179 AEAIGKKDEGEKLIEDLDAQTEKALDKYPALKDKKVLFTAFGGTTDASKIGFYTTDDPRM 238 A+ + + E + + ++ + +L T D M Sbjct: 142 ADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTL-------------IDPRHM 188 Query: 239 GFLAEHGLGTPGIVEKNSENAEQ----FW--VEVSAEKPEEFNDVDLIVAYSTGNADDDK 292 + L + E NA Q FW VS ++ + DVD++ + N+ D Sbjct: 189 LVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVL-CFDHDNSKD-- 245 Query: 293 KTLEEMQKDPLKGKIPAVQKGNV-----VFLENGPLGASANQSPLSIPWG 337 ++ + PL +P V+ G V+ L A L G Sbjct: 246 --MDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIG 293
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.2 bits (63), Expect = 0.040 Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 29/212 (13%) Query: 35 DAGAAAVMALERVPADIRAQGGVARMSDPDLIEGIVDAVSIPVMAKARIGHFVEAQI--L 92 + A AL+ V + M + + E D I ++K +GH + + L Sbjct: 96 NEQMNAEYALKEVSDMFVSM--FESMDNEYMKERAAD---IRDVSKRVLGHLIGVETGSL 150 Query: 93 GELGVDFIDESEVLSPADYINHINKWDFDVPFVCG-ATNLGEALRRITEGAAMIRSKGE- 150 + + + +E L+P+D + FV G AT++G R + A M RS Sbjct: 151 ATIAEETVIIAEDLTPSDTAQ------LNKQFVKGFATDIGG---RTSHSAIMSRSLEIP 201 Query: 151 --AGTGDVSEAVKHLRTI-----KGEIARLQNLDRDELYVAAK----ELQAPYDLVAEVA 199 GT +V+E ++H + +G + + + Y + + + + + Sbjct: 202 AVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEP 261 Query: 200 ETGKLPVVLFVAGGVATPADAALVRQMGAEGV 231 T K + +A + TP D V G EG+ Sbjct: 262 STTKDGAHVELAANIGTPKDVDGVLANGGEGI 293
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 3e-11 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 3 SVFLVDDHSVFRAGVRAELAQAA-DIEVAGDAGTVAEAVAGIAASQPDVVLLDVHMPDGG 61 ++ + DD + R + L++A D+ + +A A IAA D+V+ DV MPD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNA---ATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GLAVLRGA----PGPVYLALSVSDAAEDVIALIRAGARGYVTKNISGPELAAAVRR 113 +L P L +S + I GA Y+ K EL + R Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 60.2 bits (146), Expect = 8e-12 Identities = 55/360 (15%), Positives = 105/360 (29%), Gaps = 38/360 (10%) Query: 48 ITQSVPATGTIAAAREVSLATTQTGPIVT-LDAKVGQRVKANQELASFDTSAAERELHSQ 106 + A G + + IV + K G+ V+ L AE + Sbjct: 80 VEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 107 RASQAAEEITAFNQIEAAQLELAHSQDALDQGLNGEVNAARASVDTAQRAYDDAARAVAD 166 ++ + A+LE Q ++ + + + + Sbjct: 140 QS-----------SLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188 Query: 167 SRAASDPSVAEAAAAVDTARAGLRTANNASLQAALATLGAAGEGTADGATIATSLLASVE 226 S S + L A LA + E + +S+ Sbjct: 189 SLIKEQFSTWQNQKY--QKELNLDKKR-AERLTVLARINRY-ENLSRVEKSRLDDFSSLL 244 Query: 227 ADDAVSDAQNRVDHAEESYAHALEAVDREVGSKQRAANAAYAQLSDAQLAQRAAELGAQQ 286 A++ ++ V E Y E+ + +++ A+ + + Sbjct: 245 HKQAIA--KHAVLEQENKYV----EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 287 QIATQSQAVNHALKSAAGARVAAEEANAKLEFDISGSHLFSPLNGVIT--SVTAQQG--R 342 +I + L+ AK E S + +P++ + V + G Sbjct: 299 EILDK-------LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT 351 Query: 343 PAEGPLLAIA-DDSSLLVKAKVKEADIADIKVGDRVT--FTS-PSQPHKEYTGTVSFISP 398 AE L+ I +D +L V A V+ DI I VG + P + G V I+ Sbjct: 352 TAE-TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.004 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 215 IFSVITDPVRRGEGLATRVLDRAIADSRARGRAGLVLTCKD---ELVGFYARLGF 266 I + R +G+ T +L +AI ++ GL+L +D FYA+ F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.037 Identities = 13/87 (14%), Positives = 24/87 (27%) Query: 177 LVVESLIDAGVQLGLTRDVATKLATQTAAGAGAMLVGSGREPLALRAGVTSPGGTTAAAI 236 + E + + + A + + + R+ A P G + Sbjct: 374 ITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVL 433 Query: 237 RELEESGIRGAFYRAAEACAQRAKELG 263 E+E I A + A LG Sbjct: 434 AEMEYPLILAALTATRGNQIKAADLLG 460
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 6/139 (4%) Query: 2 TNILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLMLPGMSGT 61 IL+ +D+ ++ L L + G+DV + S+ T A D+V+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DVCKQLRAT-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGH 120 D+ +++ +PV++++A+++ + + E GA DY+ KP+ ELI I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE-- 121 Query: 121 DASAESQEEELEEQILEGG 139 + + +LE+ +G Sbjct: 122 ---PKRRPSKLEDDSQDGM 137
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 38.1 bits (88), Expect = 6e-07 Identities = 15/43 (34%), Positives = 23/43 (53%) Query: 21 EQFTKDISLGRLSESEDVAKIIGFLAGPDSDYITGQTIIVDGG 63 E F I L +L++ D+A + FL + +IT + VDGG Sbjct: 214 ETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 35.2 bits (81), Expect = 2e-04 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 34 ATAGSPSDPLVLLLHSSFGGWFDF-KDVIAPIAEQGFHVAALDMRGFGMSDKPPVEVGQD 92 A + PLV+ L S GGW K V + +QG+ V + K P +V QD Sbjct: 44 AASSHTKPPLVIFL-SGDGGWATLDKAVGGILQQQGWPVVGWSSLKYYWKQKDPKDVTQD 102 Query: 93 IRAMV 97 A++ Sbjct: 103 TLAII 107
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 29.4 bits (66), Expect = 0.030 Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 3 LKKTLAFLAVATASVSLAACGSSDNGGSSDGI 34 +KK L + +++ L AC S +S Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQK 32
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.4 bits (68), Expect = 0.010 Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 165 GWALSDSMRTEALPLQALNQAIASAEETTGLIHHSDHGSQYVSVVYNERLAQHGIAASTG 224 G A+++ + + L QA +A + + ++ ++ +R+ + + A+ G Sbjct: 46 GQAIANRFTSNI---KGLTQASRNANDGISIAQTTEGALNEINNNL-QRVRELSVQATNG 101 Query: 225 TVGDSYDNALAENVN 239 T DS ++ + + Sbjct: 102 TNSDSDLKSIQDEIQ 116
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 42.1 bits (99), Expect = 1e-06 Identities = 48/247 (19%), Positives = 95/247 (38%), Gaps = 30/247 (12%) Query: 36 KQDEKITVASLYKIRLLHLTLEAIQRGDLDPRLRVDVAPSK-GTYEGYGFAAFDDAVNVS 94 + DE+ + S +K+ L L + GD ++ Y D ++ Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLAD--GMT 114 Query: 95 LRDLMKQVASVSDNVAAHEILRLL--PAWAREAFLKRFPPHYDLQDRNSLVTAEKQLRQY 152 + +L ++SDN AA+ +L + PA AFL++ + DR E +L + Sbjct: 115 VGELCAAAITMSDNSAANLLLATVGGPA-GLTAFLRQIGDNVTRLDRW-----ETELNEA 168 Query: 153 VQSQGGSSTDIAFSAVSSLAEITNDLEQVWKDD--SAAVRRSMCE-LLGLQVWRHRVPSG 209 + G + D ++ A + L ++ SA +R + + ++ +V + S Sbjct: 169 LP---GDARD-----TTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSV 220 Query: 210 FPPSGVDIYGKTGTVGLLHGEASIIQV---EGEEPIVVSIMLKQVVPEQAMSTHDGAIGE 266 P I KTG G I+ + + +V I L+ +M+ + I Sbjct: 221 LPAGWF-IADKTGAGE--RGARGIVALLGPNNKAERIVVIYLRD--TPASMAERNQQIAG 275 Query: 267 VARLLVD 273 + L++ Sbjct: 276 IGAALIE 282
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.7 bits (69), Expect = 0.006 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 155 GTHRSARQFSLSRDLVVPPGYSRLDKTLSQLNLLVENLNDNSSAASGLARELFRSGVSCE 214 G R F ++ S L Q++ + L+ ++S+ + ++ F S + Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTS-LQTL 119 Query: 215 INDSEDALGRGLLIGRGEGMSLVFRGFHQ 243 ++++ED R LIG+ EG+ F+ Q Sbjct: 120 VSNAEDPAARQALIGKSEGLVNQFKTTDQ 148
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 1e-15 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 3/179 (1%) Query: 9 RVMVVDDDPLIQAGIKGVLESDSSIFVVASASSGTEALDLIDAYRPDVLLLDIQMPGLTG 68 ++V DDD I+ + L + V S+ I A D+++ D+ MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 69 LDVLRKVRQRPQRLACVIVTTFGEDDYVLEAVRFDADGFVLKAGDPSLLLTAV-HAVAEG 127 D+L ++++ L ++++ ++A A ++ K D + L+ + A+AE Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 128 GAFFSPSVARRLLSPERIARYAEVRAAVEKFGRLTSREQEVLVRLSRGATNSEIAQSMH 186 S + R A ++ RL + +++ G +A+++H Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.014 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 5/113 (4%) Query: 15 LTIKTANKLGLNYQENPPKNTPATSPPSATPAPPSSSTKPATASPASAPTNYAKPHNPQS 74 +T T G + ENP TPAT+ P+ + S S P N + Sbjct: 1183 VTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Query: 75 KERPMAQDTAETISATITVTNSEACLISAMLTSGDKDTIATITDKLDPADFAN 127 +A + S TN+ A + ++ + + N Sbjct: 1243 DRSTVAL--CDLTSTN---TNAVLSDARAKAQFVALNVGKAVSQHISQLEMNN 1290
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.1 bits (130), Expect = 4e-10 Identities = 79/379 (20%), Positives = 141/379 (37%), Gaps = 26/379 (6%) Query: 26 LPAIATELDVS---VGTAGLLTSAFAVGMVVGAPVMAAFARRWPPRLTLIVCLLVFAGSH 82 LP + +L S G+L + +A+ APV+ A + R+ R L+V L A + Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 83 VIGAMTPVFSLLLITRVLSALANTGFLAVALSTATTLVPANQKGRALSILLSGTTIATVV 142 I A P +L I R+++ + AVA + + +++ R + + V Sbjct: 88 AIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVA 146 Query: 143 GVPAGALLGTALGWRTTFWAIAILCIPAAVGVI-------RGVTNNVGRSETSA-TSPRL 194 G G L+G F+A A L + +G + R + S R Sbjct: 147 GPVLGGLMG-GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRW 205 Query: 195 RVELSQLATPRLILAMALGALINGGTFAAFTFLAPIVTETAGLAEAWVSVALVMFGI-GS 253 ++ +A ++A+ + G AA + + + ++L FGI S Sbjct: 206 ARGMTVVA---ALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIGISLAAFGILHS 260 Query: 254 FLGVTIAGRLSDQ-RPGLVLAVGGPLLLTGWIVLAVVASHPVALIVLVLVQGFLSFGVGS 312 I G ++ + L +G TG+I+LA +A ++VL S G+G Sbjct: 261 LAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVL---LASGGIGM 317 Query: 313 TLITRVLYAASGAPTMG--GSYATAALNIGAAAGPVLGALGLATGLGLLAPVWVASVLTA 370 + +L G A ++ + GP+L A + W A Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT-TWNGWAWIAGAA 376 Query: 371 IALVIMLLTRRALTKTAAE 389 + L+ + RR L A + Sbjct: 377 LYLLCLPALRRGLWSGAGQ 395
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 28.7 bits (64), Expect = 0.014 Identities = 8/25 (32%), Positives = 15/25 (60%) Query: 27 SYRELQEMLAERGVNVDHSTIYRWV 51 + EL ++L + G NV +T+ R + Sbjct: 21 TQDELVDILKKDGYNVTQATVSRDI 45
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 43.0 bits (101), Expect = 6e-08 Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 76 AMLDELYVAPAHRNRGVGTALLQRVFEEIRKHSAGELQINVDEVDTDARRFYERHGLT 133 A+++++ VA +R +GVGTALL + E +++ L + +++ A FY +H Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 2e-20 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 3 IRVLVIDDEAYLADAIATALNNANMQASAVYDGLEARSRIDDTRPDVVVLDRDLPGLHGD 62 +LV DD+A + + AL+ A + I D+VV D +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EVCRWVVDTHPATRVIMLTASGSLDDRLEGFGLGADDYLPKPFEVPELIARV-NALAKRN 121 ++ + P V++++A + ++ GA DYLPKPF++ ELI + ALA+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 A 122 Sbjct: 124 R 124
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 47.7 bits (113), Expect = 2e-08 Identities = 26/182 (14%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 36 PVVSVRVDDSDPDDGVCTGTAIDPHWVITARHCVEAAAKPGGSVRT---GQGDDQR---V 89 PV ++V+ + +G + ++T +H V+A +++ D Sbjct: 89 PVTYIQVEAPTGT-FIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGG 147 Query: 90 YKVDR-HEVAPRGDIALLHTEEEMQLDTFAEVADEVPAGA---------VSIYGWSSDGS 139 + ++ + + GD+A++ Q EV +++ G+ D Sbjct: 148 FTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP 207 Query: 140 GGSTELPSAEAEVRGDSPLALFDAPTALEVALKNGARIQPGDSGGAIF-ADGKVAGIMSA 198 + ++ ++ A++ G+SG +F +V GI Sbjct: 208 VA--TMWESKGKI-----------TYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254 Query: 199 GL 200 G+ Sbjct: 255 GV 256
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 54.6 bits (131), Expect = 2e-10 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 33/163 (20%) Query: 220 GSGFVAADDYVITNAHVVAGTEKV--HLDTVLGLRQ-----------AEVVYYNPNVDIA 266 SG V D ++TN HVV T L ++ Y+ D+A Sbjct: 104 ASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLA 163 Query: 267 V--LHSDNLGISP---LDWAPTPADT----GDDTMVMGFPHSGPFAARMARVRERITIAG 317 + + + A + + V G+P P A M + +IT Sbjct: 164 IVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVAT-MWESKGKIT--- 219 Query: 318 PDIYSKGRVERDAYTVRGSIRQGNSGGPLVNTDGQVLGVVFGA 360 ++ +A S GNSG P+ N +V+G+ +G Sbjct: 220 -------YLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGG 255
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 24.5 bits (53), Expect = 0.039 Identities = 8/22 (36%), Positives = 9/22 (40%) Query: 45 REIDDVTVKKFFDQYAQELGKG 66 +ID K F QY EL Sbjct: 136 GKIDKQLANKIFKQYHHELITE 157
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.1 bits (60), Expect = 0.049 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 186 KAEVARRLGIGRTTLYKYL 204 + + A LG+ R TL K + Sbjct: 452 QIKAADLLGLNRNTLRKKI 470
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 39.6 bits (92), Expect = 1e-05 Identities = 46/279 (16%), Positives = 86/279 (30%), Gaps = 60/279 (21%) Query: 35 LQASSTVPVND-----NRIAALWSAIPSLDNPQEPRIRRDCTASYLGDSFWLTAHHCVSN 89 A+ +P ND + ++ + + P + +G LT H V Sbjct: 65 EHANVILPNNDRHQITDTTNGHYAPVTYIQVE-APTGTFIASGVVVGKDTLLTNKHVVDA 123 Query: 90 A--------PFMDGFLRQS-DGEVAGIAAIYTKSSNDDVALIKVGE-------GIHADAF 133 F + + I S D+A++K G Sbjct: 124 THGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPA 183 Query: 134 TFA-NEPLTIGDQAVLTGYAQPHDYASSALTVISEKVNSLNFGNVTYTDLFKGTSSTTSR 192 T + N + +TGY P D + + K+ L + Y Sbjct: 184 TMSNNAETQVNQNITVTGY--PGDKPVATMWESKGKITYLKGEAMQYDLSTT-------- 233 Query: 193 SCGGDSGAPIYKDN-ILYAVHTAGGFNPECNDGKGRPMWHTNIVSRIPWIKETMQSN--- 248 GG+SG+P++ + + +H G N V ++ ++ N Sbjct: 234 --GGNSGSPVFNEKNEVIGIHWGGVPN---EFNGA--------VFINENVRNFLKQNIED 280 Query: 249 SSFTDQEKAKSNTGLKHAATLFPDVSNPKNPHNDSSPEK 287 F + ++ + PD NP NP N ++P++ Sbjct: 281 IHFANDDQPNNPDN--------PD--NPNNPDNPNNPDE 309
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 34.0 bits (78), Expect = 9e-04 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 11/100 (11%) Query: 118 PGRITEA------LEQGKICIVAGFQG--VNKESRDVTTL-GRGGSDTTAVALAAALQAD 168 P EA +E+G I I +G G V E ++ + D LA + AD Sbjct: 170 PKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNAD 229 Query: 169 VCEIYSDVDGVYTADPRIVPDAQKLEKLSFEEMLEMAAVG 208 + I +DV+G Q L ++ EE+ + G Sbjct: 230 IFMILTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEG 267
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.025 Identities = 16/84 (19%), Positives = 26/84 (30%) Query: 7 PDSAPAPSPAALATGHPRTPGRASAPKPGPKPQAQPPKPGPQTQNSAASTPASTEQEPAH 66 P+ P P P KP PKP+ +P Q P + Sbjct: 70 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPF 129 Query: 67 NHREPSAQEIAQAEAVAAHPFVAL 90 + P+ + A A + P ++ Sbjct: 130 ENTAPARPTSSTATAATSKPVTSV 153
>adhesinb#Adhesin B signature. Length = 310 Score = 29.0 bits (65), Expect = 0.040 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 312 IIVEESLHDKFIEALVKRTNNIKIGGP--TDSKAETG 346 + VE S+ D+ ++ + K T NI I TDS AE G Sbjct: 252 LFVESSVDDRPMKTVSKDT-NIPIYAKIFTDSVAEKG 287
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 84.3 bits (208), Expect = 9e-22 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 22/248 (8%) Query: 3 EQKIAVVTGASSGIGAASARALAADGWHVVIGARRVERLEELASEIGAEA-----YPLDV 57 E KIA +TGA+ GIG A AR LA+ G H+ E+LE++ S + AEA +P DV Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 58 TNDESVTEFVSHL----DRVDLLVNNAGGAKGLEPLVETKIEDWQWMYDVNVLGTVRMIQ 113 + ++ E + + +D+LVN AG + + E+W+ + VN G + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 114 AVMPKLEASDSGLIINMGSIAGWAPYEGGSGYNSAKHGVRVISRVLRIE--NHNVRVTEL 171 +V + SG I+ +GS P + Y S+K + ++ L +E +N+R + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 172 DPGRVATEEFSLNRFSGDAERAAAVYAGE-------LNLVAE--DIAEAVRWVAS-LPAH 221 PG T+ + + E L +A+ DIA+AV ++ S H Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 222 VNIDTMTI 229 + + + + Sbjct: 246 ITMHNLCV 253
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 149 bits (377), Expect = 6e-42 Identities = 79/398 (19%), Positives = 169/398 (42%), Gaps = 14/398 (3%) Query: 10 LLITLDNSILYTALPTLTEDLEASSTQSLWIINAYPLVMAGLLLGSGTLGDRIGHTQMFV 69 L+ +L +LP + D + W+ A+ L + G L D++G ++ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 70 VGLVIFGLASLLAALAPSP-EVLIGARAVLAVGAAAMMPATLALIRTYFTVERERNLAIA 128 G++I S++ + S +LI AR + GAAA PA + ++ + + R A Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGKAFG 142 Query: 129 IWGSLSVVGAALGPILGGTLLENFWWGSVFLVNVPVVALALVATWLIRPANDPDPSKRWD 188 + GS+ +G +GP +GG + W +L+ +P++ + V + + +D Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFD 200 Query: 189 AVSSILVMIGLVGTVVAIKEIGHAPPSVATIVVALLVAAIGFWLFVRRQRRLENPLLEFS 248 IL+ +G+V ++ + + L+V+ + F +FV+ R++ +P ++ Sbjct: 201 IKGIILMSVGIVFFMLFTT---------SYSISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 249 IFLNPAFSAGVLAAAFAMFAIGGIQLVTTQRFQQVVGFSPLEAGLLVAVIA-VGSLPTAL 307 + N F GVL + G + + V S E G ++ + + Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 308 LGGAFLHRVGLLALITGGLAVATGGVVVTVVGFQSSFGVLVLGLLVTGAGLGAALSVAST 367 +GG + R G L ++ G+ + + +++ + + ++ GL +V ST Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 368 AIIGNVPVRRAGMAASLEEVSYEFGSLIAVSVLGSLLT 405 + ++ + AG SL + ++++G LL+ Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 20/91 (21%), Positives = 35/91 (38%) Query: 2 RTSKRDSILQAALHVVETDGVTAVTYESVAAASGLTKGGLLYHFPSKDALVLALHEHLAE 61 R IL AL + GV++ + +A A+G+T+G + +HF K L + E Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 62 RWDHEMINVLGKDPDEATQDERVAAYARVSA 92 + K P + R + + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLES 99
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.7 bits (116), Expect = 3e-08 Identities = 54/307 (17%), Positives = 105/307 (34%), Gaps = 22/307 (7%) Query: 33 ALGASLV--AIPISLASYHLTGSL-SQAGVIGAASSAGSMIMTIPAGMIIDRFNKKKLLL 89 A+G L+ +P L + + + G++ A + G + DRF ++ +LL Sbjct: 18 AVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL 77 Query: 90 FYGLSQIAIWSTFSLLLYLSKFTFILLFFFSLFAGMITGAFGGLTNAILRFIIPENLLVQ 149 L + + + +L+ + AG ITGA G + A + I + + Sbjct: 78 V-SL----AGAAVDYAIMATAPFLWVLYIGRIVAG-ITGATGAVAGAYIADITDGDERAR 131 Query: 150 AQGRNQTRDNIIWMVGLPLGGFLYGLAPVIPFVVQTLSGLGPLYASRTFSMDLGKSNSEQ 209 G + G LGG + G +P PF L +S+ + Sbjct: 132 HFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL---LPESHKGE 188 Query: 210 RYSFKEFWSDSKYSLAWIWK----YPMLRTIFSIDIFSNF-ANFFLIASIDLWLAYLKVD 264 R + + S W ++ F + + A ++I D D Sbjct: 189 RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGED----RFHWD 244 Query: 265 GWIIGLTSTMFTI-GMIVGGLLQDRLIKQLPGRNIIRATMLWELLWYLLLLVFSQYWALI 323 IG++ F I + ++ + +L R + M+ + Y+LL ++ W Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 324 AVAAFFI 330 + Sbjct: 305 PIMVLLA 311
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 13 GRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFPPDVVVLDLGLPELDGL 72 +LV DD+ + ++ L RAG+D R D+VV D+ +P+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 73 EVCRRIRT-FSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPR 131 ++ RI+ D +L+++A+ + I GA DY+ KPF + EL+ + L P+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 132 TSTTPPQV 139 + + Sbjct: 124 RRPSKLED 131
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.002 Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 10/218 (4%) Query: 258 RKDPTTRFADGNEFTNAISAVRDGQRPPQPKSAALAPLAAEPSPSASTEMLASVANPKTA 317 +D T A E A A + + Q A + + + + T+ A+V + A Sbjct: 1055 EQDATETTAQNREV--AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 318 TPEYAPVKDTPRPAANHQQKSKESSGFGVGLLIAAAIAALVALGFFAANFFKGTGE---S 374 E ++ P+ + K ++S A V + + + Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 375 EETSRTPESIVVTEYRGPVTTEVI-TPEESTEDTPEEVTVTTTHSVEPKTSQQQT--PTP 431 +ETS E V V+ PE +T T + + + + PK +++ P Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK-PKNRHRRSVRSVP 1231 Query: 432 VQPVEPSTEQEIPATEEQETQVNEQT-TANSEVNSQPE 468 +T +T + T S+ ++ + Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQ 1269 Score = 31.2 bits (70), Expect = 0.011 Identities = 40/203 (19%), Positives = 62/203 (30%), Gaps = 22/203 (10%) Query: 282 QRPPQPKSAALAPLAAEPSPSASTEMLASVANPKTATPEYAPV--KDTPRPAANHQQKSK 339 P + AE S S + + + T + V + AN Q Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 340 ESSGFGVGLLIAAAIAALVALGFFAANFFKGTGESEETSRTPESIVVTEYRGP------- 392 SG + A K ET +T E VT P Sbjct: 1086 AQSG-------SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138 Query: 393 --VTTEVITPEESTEDTPEEVTVTTTHSVEPKTSQQQTPTPVQPVEPSTEQE----IPAT 446 E + T + E + T T + + +++ + QPV ST + Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 447 EEQETQVNEQTTANSEVNSQPEN 469 E T Q T NSE +++P+N Sbjct: 1199 PENTTPATTQPTVNSESSNKPKN 1221 Score = 30.4 bits (68), Expect = 0.020 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%) Query: 399 TPEESTEDTPEEVTVTTTHSVEPKTSQQQTPTPVQPVEPSTEQEIPATEE----QETQVN 454 + +T E+ T+ +VE ++ T V + E PAT + E+ Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 455 EQTTANSEVNSQPENP 470 + V S P N Sbjct: 1219 PKNRHRRSVRSVPHNV 1234
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.6 bits (76), Expect = 0.003 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 20/157 (12%) Query: 63 HPNIVSVFDTGEKDVNGLTIPYIVMELVNGRTLRDIVR------EDGPLPSQEAAQILAP 116 HPN+ +V ++M+ V+G D +R + G + S+ + Sbjct: 190 HPNLANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKF 249 Query: 117 VA----DALQASHEAGIIHRDIKPANIMLT-GTGQVKVMDFGIARALDDSTSAMTQTSAV 171 +A D +AG++H DIKP N++ +G+ V+D G+ + T++ Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTES--- 306 Query: 172 IGTAQYLSPEQARGK-PADARSDVYALGCVMYEAVTG 207 + +PE G A +SDV+ + + + G Sbjct: 307 -----FKAPELGVGNLGASEKSDVFLVVSTLLHCIEG 338
>PF06580#Sensor histidine kinase Length = 349 Score = 26.0 bits (57), Expect = 0.020 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 36 YIAIMLGLMVIGLLWLVVNYLAGESIPFMQELG-AWNYGIGFGLAIIGLLMTMGW 89 + ++ +VIG++W V N + F+ A+ + + +++T W Sbjct: 77 ILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMW 131
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.9 bits (93), Expect = 9e-07 Identities = 16/52 (30%), Positives = 23/52 (44%) Query: 92 LAVEPRYRSQGMGTLLIRAATDLARDLGAPGASLSVALANERAHRLYLFMGF 143 +AV YR +G+GT L+ A + A++ G L N A Y F Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.044 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 329 IRHLAVDKTGTLTRNQPEVTGVVPADGFDRAQVLSF---AAAVEQQSTHPLAAAIVAAEP 385 ++ L +DK G + + + + DG+D +VL++ A A+ + P AAA A Sbjct: 342 VQMLPIDKPG-IKPSGWDCRDAIETDGWDIDRVLAYFGTARALLADVSSPTAAAGGAGGG 400 Query: 386 EAPTALDISEEAGHGIGGTVEGRRVLVGSPRWID 419 E P D S AG GG G W+D Sbjct: 401 EPPKKRDPSAGAGTDPGGPGGGDDGEDPFGEWLD 434
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 27.5 bits (61), Expect = 0.013 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 6/43 (13%) Query: 4 KAIWA----TIQTGL--AGVGAVIGAFLGGLDGLVYALIAFVV 40 K IW T+ T L A V AV+ L GLDG++ L++F+ Sbjct: 81 KVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFIT 123
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.1 bits (88), Expect = 2e-04 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 12/144 (8%) Query: 433 ALATDLNH--AQVSAELAEARAEVEAAKTAADDAQAAAAAVGARLTEAEAEIGQ------ 484 A L A ++A A+ +E A + A + A EA + Sbjct: 211 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 270 Query: 485 -AREAASQAEATARQAEAVAGEAGVKVAGLES--SVSQA-RHRADTAYETARQVQTSSEA 540 A ++ A + EA + A LE V A R + +R+ + EA Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 541 RFTELTNADNSLASSLSMMASDLN 564 +L + +S + DL+ Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLD 354
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 29.4 bits (66), Expect = 0.036 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 82 KSELAAAIALLLTCGDGEQAAEVYGCAADRQQASIVFEVAADMIRQSPALSKRV 135 + E IAL+L+ D ++A+ + Q ++ + A M R SP + + V Sbjct: 133 QQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRI-ALMDRTSPEVVREV 185
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 28.7 bits (64), Expect = 0.026 Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 160 DSLLTITEIAKDYGLSAKKLNSLLHEAGVQF 190 S L ITE+A+ GL+ +LN E F Sbjct: 56 TSSLPITEVAEKTGLTFLQLNHYCEELNAFF 86
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.3 bits (60), Expect = 0.028 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 5/97 (5%) Query: 44 ARPIAAAQLAQPALEAAVDECEAAHQPPAPEPAPAPVPEVVQVSLEQVR----TVLARLS 99 Q P++ + +E + P P PAPA E + E + TV Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQ 1056 Query: 100 QAGH-TAQVRELIQAAGANKLSEVDPSKYGQLLEQAE 135 A TAQ RE+ + A +N + ++ Q + + Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.5 bits (66), Expect = 0.041 Identities = 21/180 (11%), Positives = 59/180 (32%), Gaps = 39/180 (21%) Query: 253 QAEREPLLRRFNQLGRQINAMRRAKGISSDVSLTRKFESLREFFPQANIEHIEN-IEHFH 311 + + + L + + L + + NI + + Sbjct: 291 KDKSDRLKSKSSDLQKIV---------------------------MNNINRCTKKDKILN 323 Query: 312 RSIRQILEAEFKAESKELEDERERIRHRLEQLNIRLEELSVAPTATQADIRAYSELDRQI 371 ++++ + + + E + + L L + +A ++ LD Sbjct: 324 NTLKKCEDKD------IFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENK 377 Query: 372 RSLRNANKAFHDEQRLTEAKKQASEALDEASATI--LENIEGKLN--ETMQRIDGEITRE 427 +N + +L ++++ A+E L + + L ++ +N + I+ EI +E Sbjct: 378 TPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIE-EIKKE 436
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.5 bits (89), Expect = 1e-04 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 11/115 (9%) Query: 163 AAYLKKLAQQDEELKKNRLLLDEAKEAAREAEEKRLREAAQFELKRRSAEVRAKADLADA 222 +A +K L + L+ + L++A E A + + + +A+ AD Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK----TLEAEKAALEAEKADL 300 Query: 223 KEQAEAERAAAQQVEEKLAAKIEA---LEAKLAEQE----AAAAERAGAGAQPDA 270 + Q++ A Q + L A EA LEA+ + E + A R DA Sbjct: 301 EHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA 355 Score = 38.1 bits (88), Expect = 2e-04 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 20/142 (14%) Query: 157 RSQAQTAAYLKKLAQQDEELKKNRLLLDEAKEAAREA------------EEKRLREAAQF 204 +A A L Q + L NR L +A+REA E+ ++ EA++ Sbjct: 288 AEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 347 Query: 205 ELKR-----RSAEVRAKADLADAKEQAEAERAAAQQVEEKLAAKIEA---LEAKLAEQEA 256 L+R R A+ + +A+ +EQ + A+ Q + L A EA +E L E + Sbjct: 348 SLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANS 407 Query: 257 AAAERAGAGAQPDAPLAIGEAE 278 A + + + E E Sbjct: 408 KLAALEKLNKELEESKKLTEKE 429 Score = 37.0 bits (85), Expect = 5e-04 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Query: 166 LKKLAQQDEELKKNRLLLDEAKEAAREAEEKRLREAAQFELKRRSAEVRA-KADLADAKE 224 L + A + +EL+ + L++A E A A L+ A + A KADL A E Sbjct: 108 LSEKASKIQELEARKADLEKALEGAMN--FSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 225 QAEAERAAAQQVEEKLAAKIEALEAKLAEQEA 256 A A + L A+ ALEA+ AE E Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEK 197 Score = 36.6 bits (84), Expect = 6e-04 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 8/131 (6%) Query: 160 AQTAAYLKKLAQQDEELKKNRLLLDEAKEAAREAEEKRLREAAQFELKRRSAEVRAKADL 219 Q A +KL +Q++ + +R L +A+REA+++ + + K + E + +L Sbjct: 361 KQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALE-KLNKEL 419 Query: 220 ADAKEQAEAERAAAQQVEEKLAAKIEALEAKLAEQ----EAAAAERAGAGAQPDAPLAIG 275 ++K+ E E+A Q KL A+ +AL+ KLA+Q A +A PDA Sbjct: 420 EESKKLTEKEKAELQA---KLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNK 476 Query: 276 EAETRRQLIDP 286 + Q Sbjct: 477 AVPGKGQAPQA 487
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 83.1 bits (205), Expect = 5e-22 Identities = 36/202 (17%), Positives = 76/202 (37%), Gaps = 9/202 (4%) Query: 9 AGAQRGRPGYSRDDVINAAVRAFNSRGYDATSMGHVAKELGITKSALYHHISSKEEILEL 68 A + +R +++ A+R F+ +G +TS+G +AK G+T+ A+Y H K ++ Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 69 TVAHALSNLEAVVAEVAESDLGPGERVWSLIRGSIEVLCTDPKSVALLLRLRGNSDVEER 128 + SN+ + E G V I + + LL+ + + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 129 ALERRRKLTRS--------VVPLVRDAQEAGEIRADLDAAVLTRMVFGMVNSVAE-WYDP 179 + ++ R+ + ++ EA + ADL ++ G ++ + E W Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 180 KGKLGAEEVANSVAELLFGGLR 201 ++ A +L Sbjct: 182 PQSFDLKKEARDYVAILLEMYL 203
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 36.1 bits (83), Expect = 3e-04 Identities = 13/47 (27%), Positives = 15/47 (31%) Query: 675 DDAPEETANPESPAPGEQPAPSPHQPAAPPAAPAQPEAPAPDVPSLE 721 + PE P AP P P P E P DV +E Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 29.2 bits (65), Expect = 0.047 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 6/50 (12%) Query: 678 PEETANPESPAPGEQPAPSP------HQPAAPPAAPAQPEAPAPDVPSLE 721 P E P P P P +P P +P + P + Sbjct: 64 PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113
>cloacin#Cloacin signature. Length = 551 Score = 28.1 bits (62), Expect = 0.024 Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 125 GGNGGGNYGGGQQQNQGGNNFGGGNQGGFGGNQSA 159 G G ++GGG GG N G G GGN SA Sbjct: 49 GSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 27.4 bits (60), Expect = 0.045 Identities = 12/34 (35%), Positives = 14/34 (41%) Query: 126 GNGGGNYGGGQQQNQGGNNFGGGNQGGFGGNQSA 159 G+G GG N GGN GG G G + Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.023 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Query: 88 MRQLKRIAATNWRENPTNIHILAPTGTGKAYIACAI 123 R L R+ T+ + I +GTGK +A A+ Sbjct: 150 YRVLARLMQTD-----LTLMITGESGTGKELVARAL 180
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 58.7 bits (142), Expect = 1e-11 Identities = 90/405 (22%), Positives = 144/405 (35%), Gaps = 49/405 (12%) Query: 36 ALDAMDVGLISFIMAALA---VHWGITPTQSSWLASIGFVGMALGATFGGLLADKLGRRH 92 ALDA+ +GLI ++ L VH L ++ + A G L+D+ GRR Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 93 VFALTLLVYGLATGASALSTGLAMLLVLRFIVGLGLGAELPVASTLISEFSPVKVRGRMV 152 V ++L + A + L +L + R + G+ GA VA I++ + R R Sbjct: 75 VLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHF 133 Query: 153 VLLEAFWAVGWILAAVIGTFVVGVSA-SGWRWALALGMVPAFYALFVRMKLPESVRFLES 211 + A + G + V+G + G S + + A AL + F+ LPES + Sbjct: 134 GFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL---LPESHK---- 186 Query: 212 KGKHAEAEDIVASFEAEAAAEGKELPENAAAPTYAEEDVTSGSIWSRSLRGRTAALWTIW 271 E + L A P + W+R + AAL ++ Sbjct: 187 -------------------GERRPLRREALNP-------LASFRWARGMTV-VAALMAVF 219 Query: 272 FCVNL-SYYGAFIWIPSLLVADGF---TLVKSFSFTLIITLAQLPGYAAAAWLIETWGRR 327 F + L A +W + D F S L L + G R Sbjct: 220 FIMQLVGQVPAALW--VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGER 277 Query: 328 PTLAAFLVGSACAAGLYGFADSTALILIAGCLLSFFNLGAWGALYAIGPELYPTHLRGAG 387 L ++ L FA + LL+ +G AL A+ +G Sbjct: 278 RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQL 336 Query: 388 TGAAAGFGRLASIIAPLIVPVILAGAGAHW---LFILFAAAFAIA 429 G+ A L SI+ PL+ I A + W +I AA + + Sbjct: 337 QGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLC 381
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.004 Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 10/132 (7%) Query: 30 IQQAVEGAKEQHRQISEHAAEIIGRKNQLELQINRLLKSQEDYQNQTRRALELADKAEDP 89 I++ + Q Q + + + + +INR +++ L K Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 90 QAASEYNQAAEVVASQLVAVEQELADLKTQHAAASQAAEQAKAQQQQSEARLK----EQL 145 + A + ++ V EL K+Q AK + Q K ++L Sbjct: 251 KHAVLEQE------NKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKL 304 Query: 146 AQVDELLVQADQ 157 Q + + Sbjct: 305 RQTTDNIGLLTL 316
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.007 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 4/126 (3%) Query: 188 TIREPHNGHDELPELPEHDECGEPSEAEAAFASAPKPKPAASPGSSSPSPADLAAGTAPQ 247 T P P+ + + +E K S +++ A T+ Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178 Query: 248 ASKDGGADSTENGSAEIAKTPAPVSAGDTQGSNGTSTPEKPSSGASDAAAESGSPKPAAP 307 + +T N + + P + TQ + + + KP + S P Sbjct: 1179 VEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKN----RHRRSVRSVPHNV 1234 Query: 308 KPSMMA 313 +P+ + Sbjct: 1235 EPATTS 1240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.015 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Query: 19 LVGPNGVGKTTLLRMIAG-QLKSEGLKVFGE 48 L G G+GK+TL+ + G S+ G Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 3e-11 Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 14/203 (6%) Query: 3 EKKSRRNRPSPRSRLLESATNLFTTEGIRVIGIDRILREADVAKASLYSLFGSKDALVIA 62 +K+++ R +L+ A LF+ +G+ + I + A V + ++Y F K L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 63 YVESLDEKYRADWEARIEGLTD-----PHQKVLAFFDKAIEEQPDMEFRG--SHFLNAAG 115 E + + ++ + + E+ H G Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 116 EYPRPETDAERGIVAACMEHRNWMHSTMTALLTA---KNGYPSATQASQLLIFLDGGMAG 172 E ++ C+E + + T+ + A + A + ++ G M Sbjct: 122 EMAVV----QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177 Query: 173 ARLTRELSPLKTARELAIQLLSA 195 + LK + +L Sbjct: 178 WLFAPQSFDLKKEARDYVAILLE 200
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 75.4 bits (185), Expect = 3e-17 Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 51/249 (20%) Query: 7 YPVSGILKLWHLLFASFLDESMAWLVAIVFLVLTVRSFIAPLNWLSVRSGRISALMRPEA 66 P+ +LK H + W +I+ + VR + PL S +++P+ Sbjct: 338 QPLFKLLKWIHSFVGN-------WGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKI 390 Query: 67 NAIKARLDAATTVEEAVAALQDQKELHERYKYNPLVGCLPVFIIVPFFLGLYQVVLRASR 126 A++ RL ++ Q+ L++ K NPL GC P+ I +P FL LY +++ + Sbjct: 391 QAMRERLG-----DDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVE 445 Query: 127 IGQVDHVGLLTPGDVTSFRAALLNGVPITDFARDHRDLVVPILVLAIGFTILNMIITQYR 186 + Q F + I D + ++PIL+ F I M T Sbjct: 446 LRQ------------APF------ALWIHDLSAQDPYYILPILMGVTMFFIQKMSPT--- 484 Query: 187 SFLTLQFDEKVPRRMFWFMFSMIILMPWILWSAAMSGPIPVAIIFYWAWTYLYTLVQTLV 246 + + +++ FM + + P ++ Y+ + L T++Q Sbjct: 485 -----TVTDPMQQKIMTFMPVIFTVFFL---------WFPSGLVLYYIVSNLVTIIQ--- 527 Query: 247 YEYIMYRRY 255 + ++YR Sbjct: 528 -QQLIYRGL 535
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 9e-07 Identities = 60/379 (15%), Positives = 134/379 (35%), Gaps = 69/379 (18%) Query: 20 HILTATLLVVAIFTTVRLPLWQAVINLLLLTAFAVVYFAGSVYVEQWPRGARYLWLV--- 76 + + + F L + +++ A +++ + + + +L L Sbjct: 16 QGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQ 75 Query: 77 ILTVVWLA------DMFVAPAAIYLVFALFFLYLYVLDLYAGVVCVVIATIISVTVQIPG 130 I+ V A FVA +I+ + A V + T+ + Sbjct: 76 IILRVLPACVVIGMVWFVANTSIWRLLA--------FINTKPV---------AFTLPLAL 118 Query: 131 GLTFGGVMGPAVSALVTVAIYYAFRALSLMNRELIETRSQLAESERESGMIAERQRI-AH 189 + F V+ + +Y+ + + I+ + ++A +E+ ++A + +I H Sbjct: 119 SIIFNVVV----VTFMWSLLYFGWHFFKNYKQAEID-QWKMASMAQEAQLMALKAQINPH 173 Query: 190 EIHDTLAQGLSSIQMLLHAADRDLDTEDVPRAKERIELARRTAADNLHEARAMIAAL-QP 248 + + L +I+ L+ ED +A+E + +L + A +L Sbjct: 174 FMFNALN----NIRALIL--------EDPTKAREMLTSLSELMRYSLRYSNARQVSLADE 221 Query: 249 PALAEASLEGALTRMAENFAATSGLDVEVDSEGDVLKLPMKVEAALLRIAQGAVGNVVKH 308 + ++ L+ A + + L E ++ + +V L+ Q V N +KH Sbjct: 222 LTVVDSYLQLASIQFEDR------LQFENQINPAIMDV--QVPPMLV---QTLVENGIKH 270 Query: 309 -----SEATRARITVTYAPGEVRVDVVDNGHGFDVTAVQNKPAGLGHIGLSAMRRRAEEL 363 + + + T G V ++V + G A++N GL +R R + L Sbjct: 271 GIAQLPQGGKILLKGTKDNGTVTLEVENTGSL----ALKNTKES-TGTGLQNVRERLQML 325 Query: 364 GGE---VIIESTPGSGTAV 379 G + + G A+ Sbjct: 326 YGTEAQIKLSEKQGKVNAM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 7e-10 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 10/125 (8%) Query: 2 IRVLLADDHEIVRLGLRSVLEGAEDIEVVGEVATAEAAVSAAQAGGIDVILMDLRFGAGI 61 +L+ADD +R L L +V + A AG D+++ D+ Sbjct: 4 ATILVADDDAAIRTVLNQALSR-AGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD-- 59 Query: 62 EGTRVMGGAEATAAIRSSMTTPPKVLVVTNYDTDADILGAIEAGAVGYLLKDAPPHELLA 121 + I+ + P VLV++ +T + A E GA YL K EL+ Sbjct: 60 -----ENAFDLLPRIKKARPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113 Query: 122 AVHSA 126 + A Sbjct: 114 IIGRA 118
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.9 bits (119), Expect = 9e-09 Identities = 63/379 (16%), Positives = 113/379 (29%), Gaps = 63/379 (16%) Query: 29 LPTLVDQMGLSSTQAALTISAATGSLAVCVVPASILSERFGRGRLLIISAIAATVLGLVV 88 LP + + +A + ++ LS++ G RLL+ I ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 89 PLAPNAAT-LIALRGLQGAVMAGAPATAMAWLSEELDAKDLARAMGLYIAGTSIGGLSGR 147 + + + LI R +QGA A PA M ++ + ++ +A GL + ++G G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 148 LIPTGILEFSSWRWALLGSACVSLLFAAICIILLPAQRNFTPKSIRLGNELRAIFA---- 203 I I + W + LL I II +P K +R+ Sbjct: 157 AIGGMIAHYIHWSYL--------LLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMS 208 Query: 204 -------------------------------------------HWHNRQLAPLFLVAFLA 220 N L + Sbjct: 209 VGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGII 268 Query: 221 MGTFVSMYNFLGFRLIEHFGLAPALAGSVFLF--YLTGTWSSARAGKLVQQIGHGKTLFA 278 GT + + + + + L+ A GSV +F ++ G LV + G L Sbjct: 269 FGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNI 328 Query: 279 SSLLFTVGIALCA----GPLPVVLVGIVALTVGFFAAHSTASGWVGH-LATHDRAEASSM 333 +V + + + IV + G + S V L + S+ Sbjct: 329 GVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSL 388 Query: 334 YVFCYYFGSSVVGAVAGLL 352 F + A+ G L Sbjct: 389 LNFTSFLSEGTGIAIVGGL 407
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 29.3 bits (65), Expect = 0.020 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 3/84 (3%) Query: 171 GSWLHELSVKAKTE---DGGGDVPPPTDIPDPRPTPTPTPTRDRPITSTSSTPGTTTSPV 227 G++ + L+ + G P P P P P P P + G S Sbjct: 550 GTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAA 609 Query: 228 PNPSTDKPGHPSSGRLAQTGASVL 251 N + + G + L ++ L Sbjct: 610 ANAAVNTGGVGLASTLWYAESNAL 633
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.5 bits (69), Expect = 0.011 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 14/87 (16%) Query: 1 MRMTVIGT-GYLGATHAACMAELGHEVLGVDV---------DESKIESLKNGEVPFYEPG 50 M+ V G G++G + + E GH+V+G+D ++++E L F++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 51 L--PEVLERNIAAGRLDFTTDYAQAAQ 75 L E + A+G F + + Sbjct: 61 LADREGMTDLFASG--HFERVFISPHR 85
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 63.5 bits (154), Expect = 4e-13 Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 2/122 (1%) Query: 713 APTAPAPAAPPAPAAPATPAAPSPPQAPSAPTVPPAPAVPAAPAAPVPPATPAAPAPAAP 772 PAPA P + A PA PPQA P P P P PP A P Sbjct: 40 VIELPAPAQPISVTMVA-PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK-EAPVVIEKP 97 Query: 773 APTPPAPPAASGATPPPAPAVPAAPAAPVPPATPAAPAPTPPAPPAASGATPPPAPAAPK 832 P P P P V + P P APA + A+ + P + A+ Sbjct: 98 KPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157 Query: 833 AP 834 Sbjct: 158 RA 159 Score = 62.3 bits (151), Expect = 8e-13 Identities = 33/126 (26%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 731 PAAPSPPQAPSAPTVPPAPAVPAAPAAPVPPATPAAPAPAAPAPTPPAPPAASGATPPPA 790 P+P Q S APA P A PP P P P P P A P Sbjct: 41 IELPAPAQPIS--VTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 98 Query: 791 PAVPAAPAAPVPPATPAAPAPTPPAPPAASGATPPPAPAAPKAPTPAPPSAPAAPGTTSL 850 P P P P P S P AP PT + +A + TS+ Sbjct: 99 P-----KPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSV 153 Query: 851 PKAPTP 856 P Sbjct: 154 ASGPRA 159 Score = 61.5 bits (149), Expect = 2e-12 Identities = 25/130 (19%), Positives = 31/130 (23%), Gaps = 3/130 (2%) Query: 727 APATPAAPSPPQ-APSAPTVPPAPAVPAAPAAPVP-PATPAAPAPAAPAPTPPAPPAASG 784 PA P AP P P PV P P P P P Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK- 98 Query: 785 ATPPPAPAVPAAPAAPVPPATPAAPAPTPPAPPAASGATPPPAPAAPKAPTPAPPSAPAA 844 P P P P P P P A A + ++ Sbjct: 99 PKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPR 158 Query: 845 PGTTSLPKAP 854 + + P+ P Sbjct: 159 ALSRNQPQYP 168 Score = 61.1 bits (148), Expect = 2e-12 Identities = 30/128 (23%), Positives = 37/128 (28%), Gaps = 2/128 (1%) Query: 707 PTAKAAAPTAPAPAAPP-APAAPATPAAPSPPQAPSAPTVPPAPAVPAAPAAPVPPATPA 765 + APA PP A P P P+ P PP A P Sbjct: 47 AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIP-EPPKEAPVVIEKPKPKPKPKP 105 Query: 766 APAPAAPAPTPPAPPAASGATPPPAPAVPAAPAAPVPPATPAAPAPTPPAPPAASGATPP 825 P P P S P PA P + A + P + + P A P Sbjct: 106 KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQP 165 Query: 826 PAPAAPKA 833 PA +A Sbjct: 166 QYPARAQA 173 Score = 58.8 bits (142), Expect = 1e-11 Identities = 27/131 (20%), Positives = 31/131 (23%) Query: 751 VPAAPAAPVPPATPAAPAPAAPAPTPPAPPAASGATPPPAPAVPAAPAAPVPPATPAAPA 810 V PA P + P PP P P P P P Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 99 Query: 811 PTPPAPPAASGATPPPAPAAPKAPTPAPPSAPAAPGTTSLPKAPTPPAAPQLSADTPQPP 870 P P P P PA P AP + A + P S + Sbjct: 100 KPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRA 159 Query: 871 TPPAPPAPPAA 881 P PA Sbjct: 160 LSRNQPQYPAR 170 Score = 53.4 bits (128), Expect = 9e-10 Identities = 29/119 (24%), Positives = 32/119 (26%), Gaps = 3/119 (2%) Query: 764 PAAPAPAAPAPTPPAPPAASGATPPPAPAVPAAPAAPVPPATPAAPAPTPPAPPAASGAT 823 PAPA P PA PP A P P P P P AP Sbjct: 41 IELPAPAQPISVTMVAPADL--EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 98 Query: 824 PPPAPAAPKAPTPAPPSAPAAPGTTSLPKAPTPPAAPQLSADTPQPPTPPAPPAPPAAD 882 P P P PK S P +P AP + P A+ Sbjct: 99 PKPKP-KPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASG 156 Score = 33.0 bits (75), Expect = 0.003 Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 5/106 (4%) Query: 650 SDAPSPNVSDVALMLRSSIADADGTLPQPRPKAFLGTPTRLRAPEKPAAPTEATATAPTA 709 P + +A + +P+PK + + +K P + Sbjct: 69 PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK----PKPKPKPVKKVEQPKRDVKPVESR 124 Query: 710 KAAAPTAPAPAAPPAPAAPATPAAPSP-PQAPSAPTVPPAPAVPAA 754 A+ APA P + A A + P + P PA Sbjct: 125 PASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPAR 170
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 82.3 bits (203), Expect = 6e-20 Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 48/272 (17%) Query: 109 PQRIVVLESGELDSVLALGMKPVGMTTSKG------QNPVPDYMADKASDIETVGTVHEV 162 P RIV LE ++ +LALG+ P G+ + + P+PD + D VG E Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVID-------VGLRTEP 87 Query: 163 NMEKIASLQPDLIIGSQLRLDKYYDQLNSIAPTV---FSI--RPGYTWKENFRLIGEALG 217 N+E + ++P ++ S + L IAP FS +P +++ + + L Sbjct: 88 NLELLTEMKPSFMVWSA-GYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLN 146 Query: 218 EEERTEQVMADYDKKIEEVK-KAIKDGPASEDTTVTILRFM-PGKVRLYGRLSLIGTVLD 275 + E +A Y+ I +K + +K G + + + P + ++G SL +LD Sbjct: 147 LQSAAETHLAQYEDFIRSMKPRFVKRG----ARPLLLTTLIDPRHMLVFGPNSLFQEILD 202 Query: 276 DAGLARPANQD----------IEELATEISPENIDQADADYIFYCSYGDPSATGQDTAIA 325 + G+ + I+ LA D D + + ++ D +A Sbjct: 203 EYGIPNAWQGETNFWGSTAVSIDRLAA--------YKDVDVLC---FDHDNSKDMDALMA 251 Query: 326 TEAFQQLPAVKDGHAIEVSDDTWALGLGPLGA 357 T +Q +P V+ G V W G L A Sbjct: 252 TPLWQAMPFVRAGRFQRVP-AVWFYG-ATLSA 281
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 140 bits (354), Expect = 6e-39 Identities = 79/365 (21%), Positives = 143/365 (39%), Gaps = 67/365 (18%) Query: 5 VGIDLGTTNSVVSVLEGG----EATVIANSEGSRTTPSVVAFAKNGEILVGQSAKNQAVT 60 + IDLGT N+++ V G E +V+A + +P VA VG AK Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVA-------AVGHDAKQMLGR 65 Query: 61 NVD--RTIRSVKRHIGTDWTIDIDDKKYTPQEISARTLMKLKRDAEAYLGEDVTDAVITV 118 IR +K + D+ + +++ + ++ ++ ++ V Sbjct: 66 TPGNIAAIRPMKDGVIADF--------FVTEKMLQHFIKQVHSNS---FMRPSPRVLVCV 114 Query: 119 PAYFEDSQRQATKEAGQIAGLNVLRIVNEPTAAALAYGLEKGEQEQTILVFDLGGGTFDV 178 P +R+A +E+ Q AG + ++ EP AAA+ GL + +V D+GGGT +V Sbjct: 115 PVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPV-SEATGSMVVDIGGGTTEV 173 Query: 179 SLLEIGDGVVEVMATAGDNQLGGDDWDQRIVDWLVEKFKSANGIDLTKDKMALQRLREAA 238 +++ + V + ++GGD +D+ I++++ + S G A Sbjct: 174 AVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSLIG-------------EATA 215 Query: 239 EKAKIELSSS----QSANINLPY----------ITVDSEKNPLFLDETLSRTEFQKITQD 284 E+ K E+ S+ + I + T++S + L E L T Sbjct: 216 ERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPL--TGIVSAVMV 273 Query: 285 LLDRTKAPFNQVIKDAGLSLSEVDHVVLVGGSTRMPAVSELVKEMTGREPNKGVNPDEVV 344 L++ I + G +VL GG + + L+ E TG +P V Sbjct: 274 ALEQCPPELASDISERG--------MVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCV 325 Query: 345 AVGAA 349 A G Sbjct: 326 ARGGG 330
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 32.1 bits (73), Expect = 0.003 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 22/202 (10%) Query: 182 GRVAVLVDPTKVGTAAASVTTFIGGVGSSDPGGWQRGIERARAIAHATGG-PAVAWMGYS 240 G + V+P+ AA+S T + S GGW +++A G P V W Sbjct: 30 GLTLLPVEPSTQVNAASSHTKPPLVIFLSGDGGW-ATLDKAVGGILQQQGWPVVGW---- 84 Query: 241 APRNLSGALHEAPATRGAQDLQRFQRAVGQRFPSAQRIIVGYSYGSVVAGKAVR--ADNV 298 +L + QD F + + I++GYS+G+ V + Sbjct: 85 --SSLKYYWKQKDPKDVTQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMPARY 142 Query: 299 ADDVVFVGSPGTDAATASELRARTWASTNAHDPIGTT--------TGPGGGIHGPDPSSA 350 +V+ ++ E+ +++ T T P ++G + + Sbjct: 143 RKNVLGAVLLSPSQSSDFEIHVSEMVTSDNQSARYLTLPEVNKQTTVPMLCLYGKEDDAP 202 Query: 351 AFGATPLPGAN----RLPGDHS 368 + N L G HS Sbjct: 203 LHLCPEVKQPNVTVMELSGGHS 224
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 28.3 bits (63), Expect = 0.050 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%) Query: 464 VALIIGVLFGSVV-------IPPILQVMLTGFGFQGMEGAGEDALAAPQAALMSSVASGI 516 V +IIG FG +V I P L +++ G F+ DA A +M G+ Sbjct: 21 VGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLRDAQGDIPAVVM---HYGV 77 Query: 517 FDSSLDWNLIFTGAAIGAVLIVIDEVLRK 545 F ++ ++ + AI + +I+++ RK Sbjct: 78 FIQNV-FDFLIVAFAIFMAIKLINKLNRK 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.9 bits (140), Expect = 4e-12 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%) Query: 1 MSGLKIVIADDSALLREGVAGLLERRGHHVVGQAADAPELTALVDALDELPDIVITDVRM 60 M+G I++ADD A +R + L R G+ V T D+V+TDV M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVR--ITSNAA-TLWRWIAAGDGDLVVTDVVM 57 Query: 61 PPGMSDDGLKAGVALRRRYPELAVMVLSQYVAPAYAVE 98 P + +++ P+L V+V+S A++ Sbjct: 58 PDE---NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIK 92
>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M signature. Length = 147 Score = 26.6 bits (58), Expect = 0.042 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 8/64 (12%) Query: 98 KDLDRDIEDCDVLIVEDIIDSGLTLSWLIRNLKGRNPRSL---EVVTLLRKPEVIRAEID 154 +D DR ++ + IVE I +GL L L+ L+ N R L E+ LLRK ++R +I Sbjct: 29 QDEDRRLQVEEEAIVEQI--AGLKL--LLDTLRAEN-RQLSREEIYALLRKQSIVRRQIK 83 Query: 155 LLDV 158 L++ Sbjct: 84 DLEL 87
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.017 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 18/88 (20%) Query: 197 AKIPRGVLLYGPPGTGKTLLARAV---AGEAGVPFFS-----ISGSDFVEMFVGV----- 243 + +++ G GTGK L+ARA+ PF + I G Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 244 -GASRVRD-LFKQAKENSPCIIFVDEID 269 GA F+QA+ + +F+DEI Sbjct: 217 TGAQTRSTGRFEQAEGGT---LFLDEIG 241
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 143 bits (361), Expect = 7e-40 Identities = 98/416 (23%), Positives = 172/416 (41%), Gaps = 21/416 (5%) Query: 9 ASSNRLSRDVVINLSILVLGAMIMILNETSLSVALPAIMADFSIPATSAQWLTTGFMLTM 68 + SN ++I L IL +LNE L+V+LP I DF+ P S W+ T FMLT Sbjct: 6 SQSNLRHNQILIWLCILSF---FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTF 62 Query: 69 GVTIPTTGFLLERFTTRQIFLASTGMFLAGTVIAALA-PVFIVLLAGRVVQAAGTALMIP 127 + G L ++ +++ L + G+VI + F +L+ R +Q AG A Sbjct: 63 SIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA 122 Query: 128 TLMTVAMTLVPPQRRGSVMGIISIVISVAPALGPTVGGAILNALSWHFIFWAMVPLVALI 187 +M V +P + RG G+I ++++ +GP +GG I + + W ++ + + + Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITV 182 Query: 188 LFAGVIKLVNVGENRNTPLDPFSVVLSVLAFGGLVYGLSSIEKMLEGKGMVEIIVSVVGV 247 F +KL+ D G++ I + I +V V Sbjct: 183 PFL--MKLLKKEVRIKGHFD----------IKGIILMSVGIVFFMLFTTSYSISFLIVSV 230 Query: 248 VALIIFTRRQMSLAKDNRALLDLRPFRVRNYTIAVAIMLISFGLMLGSVTVLPIYLQTSV 307 ++ +IF + K +D + + I V I FG + G V+++P ++ Sbjct: 231 LSFLIFVKHIR---KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVH 287 Query: 308 GVSALVTGLVVM-PGGLLQGIISPFVGRIFDARGPRPLTIPGAILLVAGLFLMTTLDAES 366 +S G V++ PG + I G + D RGP + G L + L + Sbjct: 288 QLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETT 347 Query: 367 QVWMVVAMHVTFALGMGLMMTPLMTTALSSLPHELYSHGSAIMNTLQQLAGATGTA 422 +M + + G+ T + T SSL + G +++N L+ TG A Sbjct: 348 SWFMTIIIVFVLG-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 31.1 bits (70), Expect = 0.009 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 6/103 (5%) Query: 156 AGPG--VGNVTAEQVTQRFAELIKSAHPEFKPNSQFNSAGTVIDALRNASTSTGTAAAGA 213 G G VTA+ + + PN + A L + G Sbjct: 256 VGNGNVHAQVTAQLDFAN----KEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGV 311 Query: 214 AGAAAAGFASQFASPQAAAPREQTHPQTQPQPAQQAPQQQMPP 256 GA + A +P A P Q + Q PQ + P Sbjct: 312 PGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGP 354
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.008 Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 32/194 (16%) Query: 515 LKLTEKESSRLLHMEDELHKRIIGQDEAVKAVSRAIRRTRAGLKDPRRPSGSFIFAGPSG 574 L ++ S+L + ++G+ A++ + R + R + + G SG Sbjct: 119 LAEPKRRPSKLEDDSQDGMP-LVGRSAAMQEIYRVLARLMQT-------DLTLMITGESG 170 Query: 575 VGKTELSKSLANFLFGSDDDLIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRR 634 GK ++++L ++ + + I+M S LFG E G T R Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTR 222 Query: 635 KP--FS-----VVLFDEIEKAHKEIYNTLLQVLEDG---RLTDGQGRIVDFKNTVLIFTS 684 F + DEI + LL+VL+ G + D + ++ + Sbjct: 223 STGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAAT 279 Query: 685 NLGTQDISKAVGLG 698 N +D+ +++ G Sbjct: 280 N---KDLKQSINQG 290
>adhesinb#Adhesin B signature. Length = 310 Score = 85.7 bits (212), Expect = 3e-21 Identities = 75/323 (23%), Positives = 127/323 (39%), Gaps = 54/323 (16%) Query: 10 ASVATLCAGSLVLTACSSADSEGAGDSDTIKVVASTSIWADVAEAVIDTAQADVDVEVEP 69 + L + L ACSS S S + VVA+ SI AD+ + + A + + Sbjct: 5 RFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVATNSIIADITKNI-----AGDKINLHS 59 Query: 70 IVKGNGVDPHHFEPTAADIAKANEADVLIVGG----GGYDSWLYQAVKNQDEIIHALPLT 125 IV G DPH +EP D+ K ++AD++ G G ++W + V+N + + Sbjct: 60 IVPV-GQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENK---- 114 Query: 126 DHGKLDEEPDVVTAMEAKDVAKSDPSKVTNIEGNEHVWYDAAAIEKVATEVADLVNKANP 185 D+ + E DV+ + K DP H W + A +A +++ +P Sbjct: 115 DYYAVSEGVDVIYLEGQSEKGKEDP----------HAWLNLENGIIYAQNIAKRLSEKDP 164 Query: 186 EAKASADPLLERVEGIKARAEKLPKLNYAQTEPIADYIMKYTPALDVTPEG----FRKA- 240 K + + + +KA EKL L+ E + + + VT EG F KA Sbjct: 165 ANKETYE------KNLKAYVEKLSALDKEAKEKFNNIPGEKK--MIVTSEGCFKYFSKAY 216 Query: 241 ---------TVSEGEPTAADLARFLQTVKDGKVDLLIYNPQTETDISSRIRKA-AEDRNV 290 +E E T + ++ ++ KV L E+ + R K ++D N+ Sbjct: 217 NVPSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLF----VESSVDDRPMKTVSKDTNI 272 Query: 291 PI---VEIGETPPEDTNFLDYYD 310 PI + + YY Sbjct: 273 PIYAKIFTDSVAEKGEEGDSYYS 295
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.6 bits (214), Expect = 2e-21 Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 14/256 (5%) Query: 199 LAGRLAVVTGAARGIGATIAEVLARDGADIICIDIPGASEHLSATANKVKG---TALPLD 255 + G++A +TGAA+GIG +A LA GA I +D ++ K + A P D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 256 VTDAGAAAAIAKHAQDRYGRAIDVIVHNAGITRDKLLANMNEGQWDAVLAVNLLAPVRIT 315 V D+ A I + G ID++V+ AG+ R L+ ++++ +W+A +VN + Sbjct: 66 VRDSAAIDEITARIEREMGP-IDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 316 EELIENGDLASGAAVVGVSSMAGISGNRGQTNYATTKAGVIGLVDALQPLLAESGSTINA 375 + + ++V V S YA++KA + L LAE N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 376 VAPGFIETAMTAAMPTGPREIGRRINS----------LQQGGQPVDVAETVAYFAAASSA 425 V+PG ET M ++ + I L++ +P D+A+ V + + + Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 426 AVSGNTVRVCGQNMMG 441 ++ + + V G +G Sbjct: 245 HITMHNLCVDGGATLG 260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.017 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 33 PTSSTSATAPNTPAAPAPATASDAAPAA-----PEPPAAPAPNPALEQLTALPVKGRAPK 87 +T+ T PN A P+ S+ A P PP APA + A K + Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 88 TGYERKQ 94 + Sbjct: 1051 VEKNEQD 1057
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.011 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%) Query: 30 LRPGT-VTCVL---GDNGAGKSTLIKILSGL 56 + PG + G G GKSTLI L GL Sbjct: 589 MEPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 1e-14 Identities = 22/108 (20%), Positives = 37/108 (34%) Query: 15 RPAQARSRERYNRILKAARSVLVDVGFESFTFDEVSRRAEVPIGTLYQFFANKYVLICEL 74 R + ++E IL A + G S + E+++ A V G +Y F +K L E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 75 DRQDTGENLEEIQRFSEHVPALQWPDFLDEFIDHLARMWREDPSRRAV 122 E + P + I L E+ R + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM 110
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 27.8 bits (61), Expect = 0.017 Identities = 20/57 (35%), Positives = 26/57 (45%) Query: 9 ASLASIAILFASQGLASAAEKDDPTTPQEFQEQTVAEGTVTPEVLDQAFEELINSDV 65 A LA +A +Q LA E DDPTT Q AE ++ +AF+ N V Sbjct: 243 AGLAGLAATGIAQALALTPEPDDPTTTDPDQAANAAESATKDQLTQEAFKNPENQKV 299
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 51.6 bits (123), Expect = 4e-10 Identities = 49/211 (23%), Positives = 74/211 (35%), Gaps = 32/211 (15%) Query: 5 KIAVVTGATGGMGREIILDLAR------------------DHHVYALGRRADELAGMDNV 46 KIA +TGA G+G + LA + A R A+ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP-ADVR 67 Query: 47 TPVAIDLVGALDKGEEENIGLPELDRVDVLVHAAARADKHSVESARPKNWREQMDLNVHA 106 AID E E+ +D+LV+ A + S + W +N Sbjct: 68 DSAAID--------EITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTG 119 Query: 107 PSEVTRRLLPQLR-QAEGIVVFINSGAGIHSYGDNVIYSATKHALYALAD--GLRIAEPA 163 +R + + + G +V + S Y+++K A GL +AE Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 164 IRVSTVSPGPTDTPMLKGL--QDYDPAHVIA 192 IR + VSPG T+T M L + VI Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIK 210
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 33.8 bits (77), Expect = 0.003 Identities = 14/72 (19%), Positives = 29/72 (40%) Query: 294 SKATHYKYERRADTILHELAHMWFGDLVTMEWWDDLWLNESFATWSAAISQAEETQYDTA 353 A H K+E A+ + G +++ D+ N+ F WS ++ + Sbjct: 172 DSAGHVKFETFAEERKEQYKINTAGCKTNEDFYADILKNKDFNAWSKEYARGFAKTGKSI 231 Query: 354 WVTFANVEKSWA 365 + + A++ SW Sbjct: 232 YYSHASMSHSWD 243
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 171 bits (436), Expect = 5e-48 Identities = 97/458 (21%), Positives = 169/458 (36%), Gaps = 90/458 (19%) Query: 7 RNVAIVAHVDHGKTTLVNGMLEQSGAFGDHGE--HTDRVMDSNDQERERGITILAKNTAI 64 N+ ++AHVD GKTTL +L SGA + G D+ ER+RGITI T+ Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 65 HRKGLGKDGGDLIINVIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLPQTRFVLTKA 124 + +N+IDTPGH DF EV R +S++DG +LL+ A +G QTR + Sbjct: 64 QW-------ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 125 LEAKLPVIICVNKTDRPDARID-------------------------------------E 147 + +P I +NK D+ + + Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWD 176 Query: 148 VVSESHDLLLE--------IASGLEDEEAAAAAETLLDLPVLYASGREGKASTENPGDGN 199 V E +D LLE A LE EE+ L PV + S + Sbjct: 177 TVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSL-FPVYHGSAKNNIG--------- 226 Query: 200 VPAAEDLQALFDVIYDVLPEPSASVDGPLQAHVANLDSSDFLGRIALLRIYSGKIKKGQQ 259 + L +VI + + L V ++ S+ R+A +R+YSG + Sbjct: 227 ------IDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDS 280 Query: 260 VAWISWDDEGNQVTKNVKVAELLRTVGFERQPDIEAIAGDIIAISGIPDIMIGDTIADVD 319 V + +K+ E+ ++ E +A +G+I+ + + + + D Sbjct: 281 VR--------ISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTK 331 Query: 320 NPVALPQIHVDEPAISMTIGVNTSPMAGQGGGDKLTARMVKARLDQELIGNVSIRVLPTE 379 +I P + T+ + M+ L + + +R Sbjct: 332 LLPQRERIENPLPLLQTTVEPSKPQQRE----------MLLDALLEISDSDPLLRYYVDS 381 Query: 380 RPDAWEVQGRGEMALSVLIENMRRE-GFELTVGKPQVV 416 + G++ + V ++ + E+ + +P V+ Sbjct: 382 ATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVI 419 Score = 35.6 bits (82), Expect = 6e-04 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 425 MEPYEMLTIDSPSEHQGAITQLLAARKGQMQSMDVREGDWVRMVFRIPARGLIGFRTQFL 484 +EPY I +P E+ + + + + V + IPAR + +R+ Sbjct: 536 LEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQL-KNNEVILSGEIPARCIQEYRSDLT 594 Query: 485 TETRGAGI 492 T G + Sbjct: 595 FFTNGRSV 602
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 27.7 bits (61), Expect = 0.038 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 98 LVPEEINPHEPATTEEAARRKRLMKTGVFTASALAFHSFPEGFATFLAGLEDPRIAIPVA 157 L P I+ E + + L T F+A + +F + L G ++ A Sbjct: 120 LAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKAFSD--RVTLPGFNSAKVTSLTA 177 Query: 158 VAIAIHNIP 166 I++H +P Sbjct: 178 THISLHLLP 186
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.0 bits (62), Expect = 0.049 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 11/56 (19%) Query: 266 HGMRHIASPTAP-----------QPEPVTAQPEPVATQPEPAAQPESAAPSQAHAE 310 H + + +P P +P P +PEP +P P +A Sbjct: 33 HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVV 88
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 42.9 bits (101), Expect = 3e-06 Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 33/195 (16%) Query: 9 HVDHGKSTLARALT---------------GMEPDRWEEEKRRGLTIDLG---FVWTRLPS 50 HVD GK+TL +L D E++RG+TI G F W Sbjct: 11 HVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW----E 66 Query: 51 GADVAFVDVPGHERFLGNMLAGIGPAPVVLFVVAADEGWQAQSTDHRDAIAALGISHGLV 110 V +D PGH FL + + + +++A +G QAQ+ A+ +GI + Sbjct: 67 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IF 125 Query: 111 ALTRADRADVARRLEVEADVRRQLHGTAL-----ADAPILTVSAKT-GEGIDELRAALDE 164 + + D+ V D++ +L + P + V+ T E D + D+ Sbjct: 126 FINKIDQNG-IDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDD 184 Query: 165 ILAA---APSPDPEQ 176 +L S + + Sbjct: 185 LLEKYMSGKSLEALE 199
>PF01206#SirA family protein Length = 76 Score = 76.7 bits (189), Expect = 3e-22 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 1 MTTPDFEIDLCGESCPYPVIHTLAALHGLKPGQTLEVTTDCPQAYRNVPDDATAAGHELI 60 M D +D G +CP P++ L + G+ L V P + ++ + GHEL+ Sbjct: 1 MAEFDQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELL 60 Query: 61 GEPTREGARMTFVFRRG 77 + E F +R Sbjct: 61 EQ-KEEDGTYHFRLKRA 76
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.4 bits (66), Expect = 0.025 Identities = 10/36 (27%), Positives = 15/36 (41%) Query: 377 FYESFGPWPALALTLALLVGWWLLQAPRRGDRRARL 412 +FGPW LAL + +L+ +R R Sbjct: 222 AVRTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHRR 257
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 60.2 bits (146), Expect = 4e-12 Identities = 76/308 (24%), Positives = 111/308 (36%), Gaps = 26/308 (8%) Query: 68 FSGYLVDAAGRKKSLLVSLVLVTVACAAYFVAHSLALLIVVRIIHGLGYAVASTAVMAVA 127 G L D GR+ LLVSL V A A L +L + RI+ G+ + A AVA Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-----TGATGAVA 116 Query: 128 QSVIPD----HRRAEGTGYFALGTTLATAFGPAAGLAIVGASGYNTIFVVVLSLTVCALA 183 + I D RA G+ + GP G ++G + F +L Sbjct: 117 GAYIADITDGDERARHFGFMSACFGFGMVAGPVLG-GLMGGFSPHAPFFAAAALNGLNFL 175 Query: 184 LTLALKIPTQER-----------PSVTFSLANIVHPAVAPF--GFFMLLIGVAYAGIITY 230 L + + P +F A + A F M L+G A + Sbjct: 176 TGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI 235 Query: 231 LNAYADASDLATGASFFFIAYAIV-SLAMRFVLGRVQDRHGDNVIFYGALASFMIGLVVL 289 D AT A+ I+ SLA + G V R G+ + + G ++L Sbjct: 236 FGEDRFHWD-ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL 294 Query: 290 AIAVADWEVVIAGALVGLGYGSIMPAAQAVAVRLVAPHEMGAGISTLFLLLDIGIGFGPV 349 A A W L+ G G MPA QA+ R V G +L L + GP+ Sbjct: 295 AFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 350 VLGMLISA 357 + + +A Sbjct: 354 LFTAIYAA 361 Score = 32.9 bits (75), Expect = 0.002 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 2/161 (1%) Query: 220 IGVAYAGIITYLNAYADASDLATGASFFFIAYAIVSLAMRFVLGRVQDRHGDNVIFYGAL 279 IG+ + L ++D+ YA++ A VLG + DR G + +L Sbjct: 21 IGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSL 80 Query: 280 ASFMIGLVVLAIAVADWEVVIAGALVGLGYGSIMPAAQAVAVRLVAPHEMGAGISTLFLL 339 A + ++A A W V+ G +V G+ A A + E + Sbjct: 81 AGAAVDYAIMATAPFLW-VLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSAC 139 Query: 340 LDIGIGFGPVVLGMLISALGYSAMYWVLAATVAVATVLYYF 380 G+ GPV+ G++ A ++ AA + + F Sbjct: 140 FGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCF 179
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 32.9 bits (75), Expect = 0.002 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 15/100 (15%) Query: 19 FDGSVDATSLDDVSPHPPGDQVDRSVVVGEVIKSTSLWALRLFVICVFLYALFRMAGNFW 78 D ++ TS + V P V + T++W+L + + Y R W Sbjct: 131 VDPALKITSFESVGP-----------KVSGELVWTAVWSLLAATVVIMFYIWVRFE---W 176 Query: 79 RGILPILLALII-CTVLAPVAGWLRRHHVPSSLAAVLTIL 117 + L ++AL+ + + L+ +++AA+LTI Sbjct: 177 QFALGAVVALVHDVLLTVGLFAVLQLKFDLTTVAALLTIT 216
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.0 bits (67), Expect = 0.017 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 23 LARAYSSSSSQPSAEHRALQESQRRQAELAPLEKAMDRLGYQLQELEESRATELAALSSQ 82 LA+A + + A +A QE+++R+ E+ + +R +L E EE R L+ + Sbjct: 132 LAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQ-LKLAEAEEKRLAALSEEAKA 190 Query: 83 VQAVTRTSTKLTDRTDKLVGALRSPNVR 110 V+ + + K+ G +++ N R Sbjct: 191 VEIAQKKLSAAQSEVVKMDGEIKTLNSR 218
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 9e-05 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 9/115 (7%) Query: 128 NAKSRNAKAQVARRAQQKAERRNRDERLSVAELIARDKKAKETARRRTGRLREMDREERR 187 N+K + + + + +NR+ + + + E A+ +E E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG-SETKETQTTETK 1101 Query: 188 RQQAVERE--ARERAASVSSAEYDDSDFAPRRPDPERRAGDVDKQPAKEPEAKPA 240 VE+E A+ S +P++ E QP EP + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE------TVQPQAEPAREND 1150
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 7e-14 Identities = 23/77 (29%), Positives = 41/77 (53%) Query: 11 NSPRRRGATAREEILDASSELFTTQGFATTSTHQIADAVGIRQASLYYHFPSKTEIFLTL 70 ++ R+ ILD + LF+ QG ++TS +IA A G+ + ++Y+HF K+++F + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 71 LNSTIEPSLELAEELAA 87 + EL E A Sbjct: 63 WELSESNIGELELEYQA 79
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.7 bits (66), Expect = 0.024 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query: 104 KALDQMHSMRPDGWIHRDVKPANILLRRRPTDSGYSVLSDFGIAISEGQSRLTAIGNVIG 163 + LD + + G +H D+KP N++ R SG V+ D G+ G+ Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRA---SGEPVVIDLGLHSRSGEQPKGF------ 303 Query: 164 TENYSSPESNSRDYSGQEAS 183 TE++ +PE + E S Sbjct: 304 TESFKAPELGVGNLGASEKS 323
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.8 bits (64), Expect = 0.017 Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 11/81 (13%) Query: 84 KSDEAQQPPVAPAPPSTEVAEKPVTNTEETESGPTPTQVSSSPAQNNSPRYQHRQQPRQK 143 K E + V P + T S T + + PR R QP+ Sbjct: 109 KKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQ-- 166 Query: 144 THTATQREDYPAGLSANGWDG 164 YPA A +G Sbjct: 167 ---------YPARAQALRIEG 178
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.9 bits (70), Expect = 0.005 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 35/128 (27%) Query: 69 APAPAGENVQEALQKIVQDVESKYGGTAGIAV--AGQDKVYSAGISEPRAAW-STSKVPV 125 A P + + ++ ES+ G G+ + +A ++ R ST KV + Sbjct: 13 ATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVL 72 Query: 126 AIAAERAGSADPSMISQ--------------------------------AITYSDNAAAE 153 A A + + AIT SDN+AA Sbjct: 73 CGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAAN 132 Query: 154 NLWQSLGG 161 L ++GG Sbjct: 133 LLLATVGG 140
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.001 Identities = 19/85 (22%), Positives = 33/85 (38%) Query: 57 LRAAPKQAAQSRQQLLALQRELDRLAAESDGFRLQLSEAEAAQLALERELAEQAREKAAA 116 ++ + A + L++ L+ S ++ EA + ALE E A+ + Sbjct: 248 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVL 307 Query: 117 QETADDALREAREARERVKHLEAEL 141 R+ +RE K LEAE Sbjct: 308 NANRQSLRRDLDASREAKKQLEAEH 332 Score = 31.6 bits (71), Expect = 0.006 Identities = 18/87 (20%), Positives = 35/87 (40%) Query: 57 LRAAPKQAAQSRQQLLALQRELDRLAAESDGFRLQLSEAEAAQLALERELAEQAREKAAA 116 ++ + A + L+ + L A R L + A+ LE E + + + Sbjct: 283 IKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 342 Query: 117 QETADDALREAREARERVKHLEAELRE 143 + + R+ +RE K LEAE ++ Sbjct: 343 EASRQSLRRDLDASREAKKQLEAEHQK 369
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.015 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 10 AAAELVDKSRLYTPLEAS-------KLAKETSSKNFDATVDVVFRLGVDPRKADQLVRGT 62 A A+ V + +E + TS T+ + F+ G DP A V+ Sbjct: 52 ADAQTVQ-DTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNK 110 Query: 63 VSL 65 + L Sbjct: 111 LQL 113
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.045 Identities = 14/86 (16%), Positives = 25/86 (29%) Query: 2 SDENNVETPETSLEAALIGSVQEQAAEAVAESETATEEAYTEAEDQSAPAEEAASAEATE 61 DE V P + + +V E + + E ++A A+EA S Sbjct: 1020 VDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN 1079 Query: 62 AAPAEDDDYRRRLRQFTRELKKQPGQ 87 E ++ K+ Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETAT 1105
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 45.3 bits (107), Expect = 2e-09 Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 48 TVGGGVAAFPGEVASEMKKVVWPTTKEMVQYTLITFAFLIVLTALVWGVDTL 99 T G AF E +E++KV+WPT +E + TLI A V++ ++WG+D + Sbjct: 63 TKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGI 114
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 3e-16 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 12/174 (6%) Query: 3 IRVFLVDDDPLVRSSLRLYFETTDDISVVAEAANGAECLSMLEQVDVDIVLADIHMPTMD 62 + + DDD +R+ L V +N A + D D+V+ D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG-YDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GITLLRKIKER-PYPPVFLAVTSFDSDDTMLKILQEGGAGYILKNQRPQSIIDAVREAIH 121 LL +IK+ P PV L +++ ++ T +K ++G Y+ K +I + A+ Sbjct: 62 AFDLLPRIKKARPDLPV-LVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 122 ---GGTVVAPVAMHRLVGYIGDAPRKDPVAAAIESHSLSNGEINVLKLLLQGNS 172 + +G + + + ++ L L++ G S Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD-----LTLMITGES 169
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.4 bits (68), Expect = 0.005 Identities = 11/44 (25%), Positives = 19/44 (43%) Query: 57 VTAERMWFKQTDAASVANRNDYTVPVSHTVTDKRTQTTEVSVSV 100 V E + + + S N + T +S + RT T+EV + Sbjct: 293 VDMENIILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSEVHGNA 336
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 32.3 bits (73), Expect = 0.004 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 54 TTAGPNDRDTDGDGLTDDQEVNVTKTDPTNPDTDGDGLTDG----QEVNVHKTDPTEPDT 109 T+AGP D D DG+ D EV D N T + + +K+ P + T Sbjct: 198 TSAGPTVPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWST 257 Query: 110 DGDNIKDGDEVNG 122 D D ++V G Sbjct: 258 ASDPYSDFEKVTG 270 Score = 31.6 bits (71), Expect = 0.007 Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 22/121 (18%) Query: 148 DDNDDDKEILQGTNPNDPDSKPSGKDSDGDGLTDEDETSGERNTGFGKKPTEPNNPDTDD 207 D+ + KE++ N P+ K +S T P PD D+ Sbjct: 166 TDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTS----------------AGPTVPDRDN 209 Query: 208 DGVKDGHEILDGT-DPNNSDTDYDGLIDGDEKAKG-----TDPKKADTDGDGIKDGDEVS 261 DG+ D E+ T D N T I + KG + P+K T D D ++V+ Sbjct: 210 DGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVT 269 Query: 262 G 262 G Sbjct: 270 G 270
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.1 bits (78), Expect = 9e-05 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 85 ALDKQARGTGLGKQVMEAALQYAAVAMSGQPVYLEAQ---APLVDYYSAYGFEVCG 137 A+ K R G+G ++ A+++A + LE Q +Y+ + F + Sbjct: 96 AVAKDYRKKGVGTALLHKAIEWAKENHFCG-LMLETQDINISACHFYAKHHFIIGA 150
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.034 Identities = 7/24 (29%), Positives = 14/24 (58%) Query: 600 VKKGDTVKAGELLATVDFGAVRAA 623 VK+G++V+ G++L + A Sbjct: 112 VKEGESVRKGDVLLKLTALGAEAD 135
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 485 bits (1251), Expect = e-174 Identities = 187/398 (46%), Positives = 260/398 (65%), Gaps = 8/398 (2%) Query: 4 VLVLNSGSSSVKFQLVDPEGTATDAPLVSGLVEQVGEPMGAVTVKTGGEEYKEELEIPTH 63 +LV+N GSSS+K+QL++ + L GL E++G +T GE+ K + ++ H Sbjct: 3 ILVINCGSSSLKYQLIESK---DGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDH 59 Query: 64 SFGLERAFDIMHQHNVGPMDV--EVVAVGHRVVHGGRLFSDPQLITDQIESMIEDLIPLA 121 ++ D + + G + E+ AVGHRVVHGG F+ LITD + I D I LA Sbjct: 60 KDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELA 119 Query: 122 PLHNPANLDGIRVARKMLPNIPHVAVFDTAFFNHMPPAAALYAINNEVASKYDIRRYGFH 181 PLHNPAN++GI+ +++P++P VAVFDTAF MP A LY I E +KY IR+YGFH Sbjct: 120 PLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFH 179 Query: 182 GTSHEFVSQQVPRLLDKDPKRVNQITLHLGNGASAAAIRHGRPIDTSMGLTPLAGLAMGT 241 GTSH++VSQ+ +L+K + + IT HLGNG+S AA+++G+ IDTSMG TPL GLAMGT Sbjct: 180 GTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGT 239 Query: 242 RSGDIDPGIIFHLSRQAGMSIDEIDNLLNKQSGVKGISGV-NDFRVLRER-IEAEDQDAW 299 RSG IDP II +L + +S +E+ N+LNK+SGV GISG+ +DFR L + + D+ A Sbjct: 240 RSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQ 299 Query: 300 LAYNIYIHQLRRFIGSYMIALGRVDAITFTAGVGENDTEVRQDSLFNLGMYGIHFDKQAN 359 LA N++ +++++ IGSY A+G VD I FTAG+GEN E+R+ L L G DK+ N Sbjct: 300 LALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKN 359 Query: 360 LVRSKEPRMISKADSPVKVFVVPTNEELAIAQKSAEIA 397 VR +E +IS ADS V V VVPTNEE IA+ + +I Sbjct: 360 KVRGEE-AIISTADSKVNVMVVPTNEEYMIAKDTEKIV 396
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 37.0 bits (85), Expect = 4e-04 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Query: 297 LLPALDYLHARGVVYNDLKPSNIIV--TEDQVKLIDLGAVSGIGAFGHIYGTKGFQAPE- 353 LL ++L GVV+ND+KP N++ + +IDLG S G + T+ F+APE Sbjct: 254 LLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGF-TESFKAPEL 312 Query: 354 -IVKSGPSVASDIYTIGRTL 372 + G S SD++ + TL Sbjct: 313 GVGNLGASEKSDVFLVVSTL 332
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.010 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%) Query: 108 YGVIAAVIMFLALVLIYFLSEMLAPDSVKELYEPFKEDAGKRSLWMFPLLSFLVTIFVQG 167 + + M L++++ L+ L +K + E+ G W V + Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNS 529 Query: 168 LGWLLRQT-------AGTVALSLILYLGI 189 +G +L T A VA ++L+L + Sbjct: 530 VGKILGSTGRYLLIYALIVAGMVVLFLRL 558
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 66.8 bits (163), Expect = 4e-14 Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 4/208 (1%) Query: 28 MPAIVSDLGTTRGAVQLTLTGFFIGMGVGQLVIGPLSDAVGRKRLLILGAGVALAASAVA 87 +P I +D + T F + +G V G LSD +G KRLL+ G + S + Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 88 ALAPSIA-VLIAARAFQGLGGGACVVLSRAVVPDLLTGAAAAKAYSLLMALQGIAPALAP 146 + S +LI AR QG G A L VV + KA+ L+ ++ + + P Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 147 VMGGFLAEPIGWRGIFWVLTGLHALQFVLAILVVPETAGGRPHD--HLVRTVIGNYLTVM 204 +GG +A I W + + L L+ E D ++ +G ++ Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 205 -RNGRFWGFLVTVAFGFCAMFSYISASS 231 FL+ F +I + Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVT 244
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.1 bits (70), Expect = 0.003 Identities = 16/53 (30%), Positives = 25/53 (47%) Query: 269 VEVAAAWRRRGLGTVLGSHMLGWGKDNGAEKAYLQVVASNSAGVAMYGKLGFI 321 + VA +R++G+GT L + W K+N L+ N + Y K FI Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>PF06580#Sensor histidine kinase Length = 349 Score = 25.2 bits (55), Expect = 0.037 Identities = 5/33 (15%), Positives = 12/33 (36%) Query: 27 EAIRTQLDISPVRYHQRLNVLLDAPAAAEAYPV 59 + + L ++ +++ RL A V Sbjct: 223 TVVDSYLQLASIQFEDRLQFENQINPAIMDVQV 255
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.024 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 17/138 (12%) Query: 320 LLILCGSIGSAAFAL--ACGASWIEVTISGLTAGAGMLFYYFVVIPFGVGA-------VV 370 ++ L G + +A + + W TI A G+L + G A + Sbjct: 221 IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRAL 280 Query: 371 ASGISAVAVGLA-GGLLSRRWMMPPLITMIVGYTPMLPGLTLYRGMYASLNEQ-----MI 424 G+ A G +R WM P++ ++ +P L Q + Sbjct: 281 MLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSL 340 Query: 425 VGFTNLARAIA--IAGAL 440 T+L + + A+ Sbjct: 341 AALTSLTSIVGPLLFTAI 358
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.2 bits (109), Expect = 1e-08 Identities = 19/174 (10%), Positives = 48/174 (27%), Gaps = 40/174 (22%) Query: 11 LEATLAIIEAEGVHAVTYDALATATGISKSGLIYHFPSRHALLVDCHRFCAQRWEDELEA 70 L+ L + +GV + + +A A G+++ + +HF + L + + Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76 Query: 71 LAGGKKAEELSEKERYRALILSLGKNDPLIELLMSIHSQQHADFMEQWRDVDKRWMPDPA 130 + D + R++ + Sbjct: 77 YQA-----------------------------------KFPGDPLSVLREILIHVLESTV 101 Query: 131 GNNLSPLIVTLL-----GNGLWVHDHLTERKIPAASRKKIVELLLAFLDTGELH 179 L++ ++ G +R + S +I + L ++ L Sbjct: 102 TEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 160 bits (405), Expect = 8e-46 Identities = 91/440 (20%), Positives = 183/440 (41%), Gaps = 16/440 (3%) Query: 9 NHAATQSTKAQRWTFFAVVSLGLLMIGLDNSILYTALPALSEQLHTTSTQQLWIINAYAL 68 N + +QS + L + L+ +L +LP ++ + W+ A+ L Sbjct: 2 NTSYSQSNLRHNQILIWLCILSFFSV-LNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 69 VLAGLLLGTGTLGDRIGHRRMFVIGLFLFGGASLAAALAPSAWF-LVGARALLGLGAAVM 127 + G L D++G +R+ + G+ + S+ + S + L+ AR + G GAA Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAA-A 119 Query: 128 MPATLALIRLTFDDEIERNTAIGIWGSVAVVGAAAGPTVGGFLLEHFWWGSVFLLNVPIV 187 PA + ++ + + R A G+ GS+ +G GP +GG + + W +LL +P++ Sbjct: 120 FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMI 177 Query: 188 LIALILTYFLAPPNQPNPEKHWDFISSLFALVTLSSLVLSIKSFAGSQFSLAGGALLVFL 247 I + + + H+D + V + +L S+ + L+V + Sbjct: 178 TIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSY-------SISFLIVSV 230 Query: 248 VGAFLFARRQNQLTDPLLTFDIFRSPVFTGGVITAGGAMFGMSGLEMLTTQKLQLVDGFS 307 + +F + ++TDP + + ++ F GV+ G ++G + ++ V S Sbjct: 231 LSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLS 290 Query: 308 PLHVG-LTISAVAIAALPMSTLGGANLHRWGFLPIIAGGFLFMAAGIGIAMWAGHHGIFW 366 +G + I ++ + +GG + R G L ++ G F++ A + ++ Sbjct: 291 TAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWF 350 Query: 367 LFVAGMLTMGIGAGLTMSVSSTAIIGAAPAHRSGMAAGVEEVSYEFGTLLSIAITGSIL- 425 + + + +G G T +V ST + + +G + + IAI G +L Sbjct: 351 MTIIIVFVLG-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409 Query: 426 -PLLYARNLPEGISGMQALY 444 PLL R LP + LY Sbjct: 410 IPLLDQRLLPMEVDQSTYLY 429
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.0 bits (83), Expect = 3e-04 Identities = 82/367 (22%), Positives = 127/367 (34%), Gaps = 46/367 (12%) Query: 86 LVIFAVTPVMGQRSDRLGRRRRALGFWSLMTFLAMAALAFIRNDAPVYFWLGLLGLAVGS 145 L+ FA PV+G SDR GRR L+ LA AA+ + + W+ +G V Sbjct: 54 LMQFACAPVLGALSDRFGRRP------VLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAG 107 Query: 146 VTIQFAEV--NYFAQLNQVAEEDKVGRVSGLGWSAGYFGGIVLLLICYFGFVSGD--GGA 201 +T V Y A + E R G+ + FG FG V+G GG Sbjct: 108 ITGATGAVAGAYIADITDGDE-----RARHFGFMSACFG---------FGMVAGPVLGGL 153 Query: 202 LGLSTEGGFNMRMVALLAAIWFGVSALPVLFRVPEITPSGGAAGGVVDSYKELFRTLRDL 261 + GGF+ AA G++ L F +PE G + + R Sbjct: 154 M-----GGFSPHAPFFAAAALNGLNFLTGCFLLPE--SHKGERRPLRREALNPLASFR-- 204 Query: 262 WQVDRNAVYFLFASAIFRDGLSAVFSFGAVL----GVSVYGLLPGDVLI-FGVTANVAAA 316 W V L A + V A L G + + I + + Sbjct: 205 WARGMTVVAALMAVFF---IMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSL 261 Query: 317 LGAVIGGLIDDHVGPKAIIVTCLITLTAMAIVMYFASGATAFW--ICGLVLCLCVGPAQA 374 A+I G + +G + + ++ + A + AT W +VL G Sbjct: 262 AQAMITGPVAARLGERRAL---MLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMP 318 Query: 375 SARGFLARVAPAGREGEMFGLYATTGRAVSWLTPLLFGLFVSWLGQGDRGGVLAIGLVLL 434 + + L+R R+G++ G A S + PLLF + G G L Sbjct: 319 ALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALY 378 Query: 435 VGALILI 441 + L + Sbjct: 379 LLCLPAL 385
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 107 bits (268), Expect = 5e-29 Identities = 35/117 (29%), Positives = 60/117 (51%) Query: 8 KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMPGMDGFE 67 +LV DD+ I +L +L G++V ++ R + D + DV+MP + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 68 LLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124 LL ++++ D PVL ++A+++ I GA DY+ KPF L E+I + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 5e-07 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 22/106 (20%) Query: 347 LVSNALRHGGEEAKVKLTIREEAGEKGTDVLIDVADDGKGMTPEDASHIFERFYRADTSR 406 LV N ++HG + I + + V ++V + G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 407 TRDTGGSGLGLAIVKSLVEQHGG---RISVESALGEGSTFTLRLPA 449 +G GL V+ ++ G +I + G+ + +P Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIPG 349
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 31.9 bits (72), Expect = 5e-04 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 63 VALEIGAAIKTAFDTPRT----GYIIAGFDVPHTHIHLFPTEKMEEYDFAKAYAADATDP 118 +A GAA RT G IA D + + E A+A+ AD D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 119 AAMDEAAARIRQHLG 133 AA+DE ARI + +G Sbjct: 70 AAIDEITARIEREMG 84