>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.044 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 19/173 (10%) Query: 121 QEESRLKERILKRKNEKIILNVNFIGEEVLGEEEASARFEKY---SQALKSNYIQYISIK 177 Q+ S ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1047 bits (2708), Expect = 0.0 Identities = 353/569 (62%), Positives = 441/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDTQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN D Q GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKNIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.1 bits (67), Expect = 0.034 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 27/153 (17%) Query: 464 MEKALNTLGQEISSMLKASLGFANA------LNHESKDLKTCVDNLTKTAHKQERSLKNT 517 K L ++ S+ A G+A A E+ + K +D T K + + Sbjct: 160 ATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVK---AGTDA 216 Query: 518 TQSLEEITNIIT----TIDSKSQEMISQGED--------IKSVVDMIREIADQT------ 559 E+ NI+T T ++ SQ +SQGE + ++ M EI + Sbjct: 217 KAKAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQ 276 Query: 560 NLLALNAAIEAARAGEHGRGFAVVADEVRKLAE 592 N LAL A++ R E + A +E RK E Sbjct: 277 NDLALFNALQEGRQAEMEKKSAEFQEETRKAEE 309
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 1e-04 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%) Query: 8 EKASKRAKQEAKTEATQENKAKENKIKESKI-KEAK------TKESKIKEAKTKESKIKE 60 E ++ +KQE+KT E A E + ++ KEAK T+ +++ ++ ++ + + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 61 TKAKEPVPVKK 71 T+ KE V+K Sbjct: 1098 TETKETATVEK 1108
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.009 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 23 IKPQESLAILGVSGSGKSTLLSHLATMLKPDSGTISLLEHQDIY-ALNSKKLLELRRLK 80 K S+ + G G GKSTL++ L + + +D Y + EL + Sbjct: 593 CKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT 651
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 2e-04 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 8/150 (5%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDAFESLNLDPSKQESDLDKVADNVKKQENDAFKMPI 109 P ET ++ T ++ + DA E+ + + V N Q N+ + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTNQTQTEMKTTEETQEAKKELKA-VEHTPMSAQKESQAVAKKETPHKKPKVTPKDKEAH 168 +T +TQT T E +++ K E T + SQ K+E + V P+ + A Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE---QSETVQPQAEPAR 1147 Query: 169 KDKVKHAAKELKAK--KEAHKEVPKKANSK 196 ++ KE +++ A E P K S Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177 Score = 32.3 bits (73), Expect = 0.002 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 10/124 (8%) Query: 79 LNLDPSKQESDLDKVADNVKKQENDAFKMPIQTNQTQTEMKTTEETQEAKKELKAVEHTP 138 PS+ + VA+N K++ K + + T+T + E +EAK +KA T Sbjct: 1029 APATPSETT---ETVAENSKQESKTVEKN--EQDATETTAQNREVAKEAKSNVKANTQTN 1083 Query: 139 MSAQ-----KESQAVAKKETPHKKPKVTPKDKEAHKDKVKHAAKELKAKKEAHKEVPKKA 193 AQ KE+Q KET + + K + +V ++ K+E + V +A Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 194 NSKT 197 Sbjct: 1144 EPAR 1147
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.1 bits (145), Expect = 8e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKPLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>FLAGELLIN#Flagellin signature. Length = 507 Score = 52.4 bits (125), Expect = 6e-09 Identities = 24/126 (19%), Positives = 55/126 (43%), Gaps = 1/126 (0%) Query: 14 NYQNALQNKINDTNTQIASGLKIRYGYQNSNINNQNLKFQYEENTLDQGIDVAQNAYTST 73 N N Q+ ++ +++SGL+I ++ +F L Q A + + Sbjct: 15 NNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIA 74 Query: 74 LNTDKALQEFSKTMETFKTKLIQSANDVHSETSRAAIANDLERLREHMMNVAN-TSIGGE 132 T+ AL E + ++ + +Q+ N +S++ +I +++++ E + V+N T G Sbjct: 75 QTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGV 134 Query: 133 FLFGGS 138 + Sbjct: 135 KVLSQD 140
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 1e-07 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLISLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKKALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + +++A GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLKKKSVKKEESAFKIPFHL----- 200 + ++ + + F+ L H +++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTTAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + TT G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 56.2 bits (135), Expect = 2e-10 Identities = 57/274 (20%), Positives = 88/274 (32%), Gaps = 20/274 (7%) Query: 140 ELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKETPQEEKPKDDETQEGETLKNEEV 199 E+E N Q +E + P T T E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 200 SKELETQEEIKE-ETQEQAKEQEPIKEETQEEVKEETQ-------EEIKEETQEEIKEET 251 SK+ E E + E + + +E + VK TQ +ETQ +ET Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 252 QEI-KEEKQ----EKTQDSPSVQELEAMQELVKEIQENSNGQENKKETQESAETPQETPQ 306 + KEEK EKTQ+ P V + ++ E + + + + + PQ Q Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS--Q 1161 Query: 307 EKETQKLETPQEEIQENAEKTQKLETQEDHYESIEDIPEPVMAQAMGEELPFLNESVAKI 366 T E P +E N E+ T + S+ + PE P +N + Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA---TTQPTVNSESSNK 1218 Query: 367 PNNENDTETPKESVIKTPQEKEESDKTSSPLELR 400 P N + SV + S S + L Sbjct: 1219 PKNRHRRSV--RSVPHNVEPATTSSNDRSTVALC 1250 Score = 30.0 bits (67), Expect = 0.022 Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 28/202 (13%) Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEVKETPQEEKPKDDETQEGETL------------- 194 Q EP E PT+N +E + + T E+P + + E Sbjct: 1138 TVQPQAEPAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSV 1195 Query: 195 -KNEEVSKELETQEEIKEETQEQAKEQEPI----KEETQEEVKEETQEEIKEETQEEIKE 249 +N E + TQ + E+ + K + E + + + Sbjct: 1196 VENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTST 1255 Query: 250 ETQEIKEEKQEKTQDSPSVQELEAMQELVKEIQENSNGQEN------KKETQESAETPQE 303 T + + + K Q ++ +A+ + + +++ N+ GQ N S+ + Sbjct: 1256 NTNAVLSDARAKAQ-FVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRR 1314 Query: 304 TPQEKETQKLETPQEEIQENAE 325 K TQ + I N + Sbjct: 1315 F-SSKSTQTQLGWDQTISNNVQ 1335
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (485), Expect = 4e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.1 bits (70), Expect = 0.029 Identities = 20/165 (12%), Positives = 54/165 (32%), Gaps = 5/165 (3%) Query: 682 NRPYNNMSFGYLIDFVGIQENFDKTTDDYLKELNRFNQNGANSDSNIKDIFADRENLEKD 741 + G + G+Q +D + L+ + + I Sbjct: 45 STLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSS 104 Query: 742 IKNAYNDLFDYPIDDIEDMTSAIVKMSEINELQKVSHAIKTLKERYNLIRTSNDEKILSL 801 + D F + + + + I + + + + KT + R + + +++ Sbjct: 105 LATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYL---RDQDKQ--VNI 159 Query: 802 KEKIDIEKINKISSTLNQKAKQLYALKNINEPKNPNDLIILEDLI 846 +++IN + + Q+ L + +PN+L+ D + Sbjct: 160 AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQL 204
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.1 bits (62), Expect = 0.006 Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 46 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK 93 +FQ+ E+R + IER K ER++ L + +++ L + K E QK Sbjct: 149 AFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQK 196
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (506), Expect = 8e-58 Identities = 115/461 (24%), Positives = 191/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVEEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 27.2 bits (60), Expect = 0.026 Identities = 11/36 (30%), Positives = 15/36 (41%) Query: 49 GKLIGGGVGGFVGDKIGGAIGVPGGPVGIGLGRFVG 84 G G GG D++ + GG GI G +G Sbjct: 220 GSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1711 bits (4432), Expect = 0.0 Identities = 924/1223 (75%), Positives = 1021/1223 (83%), Gaps = 91/1223 (7%) Query: 1 MTNEIIDQTTTPNQTDFVPQRFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFE 60 MTNE IDQ + F PQ+FINNLQVAFLKVDNAVAS+DPDQKPIVDKNDRDNRQAFE Sbjct: 1 MTNETIDQQPQ-TEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNRQAFE 59 Query: 61 KISQLKEEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI 120 ISQL+EEY+NKAIKNPTKKNQYFSDFINKSNDLINKDNLI V+SS +SF+KFGDQRY+I Sbjct: 60 GISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRI 119 Query: 121 FMNWVSHQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD 180 F +WVSHQ DPSKINT+ IRNFMENIIQPPI DDKEKAEFL+SAKQSFAGIIIGNQIR+D Sbjct: 120 FTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQIRTD 179 Query: 181 QKFMGVFDESLKERQEAEKNGEPAGGDWLDIFLSFVFNKKQSSDLKETLNQEPRPDFEQN 240 QKFMGVFDESLKERQEAEKNGEP GGDWLDIFLSF+F+KKQSSD+KE +NQEP P + + Sbjct: 180 QKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPD 239 Query: 241 LATTTTNIQGLPPESRDLLDERGNFFKFTLGDVEMLDVEGVADKDPNYKFNQLLIHNNAL 300 +ATTTT+IQGLPPE+RDLLDERGNF KFTLGD+EMLDVEGVAD DPNYKFNQLLIHNNAL Sbjct: 240 IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL 299 Query: 301 SSVLMGGHSNIEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGNNVATLINAHLNNGSGL 360 SSVLMG H+ IEPEKVSLLYGGNGGP ARHDWNATVGYK+QQGNNVAT+IN H+ NGSGL Sbjct: 300 SSVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKNGSGL 359 Query: 361 IIAGNENGIKNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLVQNNAKLDNLSEKEKE 420 +IAG E GI NPSFYLYKEDQLTG ++ALSQEEIQNK+DFMEFL QNNAKLDNLSEKEKE Sbjct: 360 VIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSEKEKE 419 Query: 421 KFQTEIENFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGKKQDK 480 KF+TEI++FQKD KAYLDALGND IAFVSKKD KH AL+TEFGNG++SYTLKDYGKK DK Sbjct: 420 KFRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGKKADK 479 Query: 481 ALDGETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSRLEANLSKVAVFN 540 ALD E TLQG+LKHDGVMFV+YSNFKYTNASK+P+KGVG TNGVS LE +KVA+FN Sbjct: 480 ALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKVAIFN 539 Query: 541 LPNLNNLAITNYIRRDLEDKLWAKGLSPQEANKLIKDFLNSNKELLGKVSNFNKAVAEAK 600 LP+LNNLAIT+++RR+LEDKL KGLSPQEANKLIKDFL+SNKEL+GK NFNKAVA+AK Sbjct: 540 LPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAVADAK 599 Query: 601 NTGNYDEVKKAQKDLEKSLRKREHLEKEVAKKLESRNDNKNRMEAKAQANSQKDKIFALI 660 NTGNYDEVKKAQKDLEKSLRKREHLEKEV KKLES++ NKN+MEAKAQANSQKD+IFALI Sbjct: 600 NTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALI 659 Query: 661 NQEASKEARAVAFDPNLKGVRSELSDKLENINKNLKDFGKSFDELKSGKNNDFNKAEETL 720 N+EA+++ARA+A+ NLKG++ ELSDKLEN+NKNLKDF KSFDE K+GKN DF+KAEETL Sbjct: 660 NKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKAEETL 719 Query: 721 KALKDSVKDLGINPEWISKIENLNAALNDFKNGKNKDFSKVTQAKSDFENSIKDVIINQK 780 KALK SVKDLGINPEWISK+ENLNAALN+FKNGKNKDFSKVTQAKSD ENS+KDVIINQK Sbjct: 720 KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK 779 Query: 781 ITDKVDNLNQAVSETKLTGDFSKVEQALAELKNLS-------------LDLGKNSDLQKS 827 +TDKVDNLNQAVS K TGDFS+VEQALA+LKN S L+ K S++ +S Sbjct: 780 VTDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSEIYQS 839 Query: 828 VKNGVNGTLVGNGLSKTEATTLAKNFSDIRKELNEKLFGNSNNNNNGLKNSTEPIYAKVA 887 VKNGVNGTLVGNGLS+ EATTL+KNFSDI+KELN KL +NNNNNGLKN EPIYAKV Sbjct: 840 VKNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNNNGLKN--EPIYAKVN 897 Query: 888 KKVSVKIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASP-EPIYAQVAKKVSA 946 KK AG++AS EPIYAQVAKKV+A Sbjct: 898 KK------------------------------------KAGQAASLEEPIYAQVAKKVNA 921 Query: 947 KIDQLNEATSAINRKIDRINKIASAGKGVGGFSGAGRSASPEPIYATIDFDEANQAGFPL 1006 KID+LN+ S G GV G AGFPL Sbjct: 922 KIDRLNQIAS---------------GLGVVG----------------------QAAGFPL 944 Query: 1007 MRSAAVNDLSKVGLSREQELTRRIGDLNQAVSEAKTGHFGNLEQKIDELKDSTKKNALKL 1066 R V+DLSKVGLSR QEL ++I +LNQAVSEAK G FGNLEQ ID+LKDSTK N + L Sbjct: 945 KRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKHNPMNL 1004 Query: 1067 WVESAKQVPTGLQAKLDNYATNSHTRINSNVQSGAINEKATGMLMQKNPEWLKLVNDKIV 1126 WVESAK+VP L AKLDNYATNSH RINSN+++GAINEKATGML QKNPEWLKLVNDKIV Sbjct: 1005 WVESAKKVPASLSAKLDNYATNSHIRINSNIKNGAINEKATGMLTQKNPEWLKLVNDKIV 1064 Query: 1127 AHNVGSTPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDVKSDFVQFLTNAFSTGS-Y 1185 AHNVGS PLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKD S F QFLTNAFST S Y Sbjct: 1065 AHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAVKDTNSGFTQFLTNAFSTASYY 1124 Query: 1186 SLMKANAEHGVKNTNTKGGFQKS 1208 L + NAEHG+KN NTKGGFQKS Sbjct: 1125 CLARENAEHGIKNVNTKGGFQKS 1147
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (296), Expect = 1e-34 Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 10/198 (5%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKV 219 S + + NP G++V Sbjct: 199 GTPSKEVDRFKNPLGYQV 216
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 868 bits (2243), Expect = 0.0 Identities = 513/522 (98%), Positives = 515/522 (98%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EEAVKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EEAV+QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYLAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYY APEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 9e-05 Identities = 39/253 (15%), Positives = 88/253 (34%), Gaps = 19/253 (7%) Query: 897 TPEAKKLLEEEAKESVKAYLDCVSQARTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 956 P ++ + + +++T + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 957 VSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKERKACEKLLTPEA 1016 A++ +E KE + T E + ++E +A+ E E+ +T + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE-------------KAKVETEKTQEVPKVTSQV 1129 Query: 1017 RKKLEEAKKSVKAYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRA 1076 K E+++ T K+ + T + +E +V+ + + Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 1077 RNEKEKQECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKE--S 1134 E + TP + + K + +R V+ +P +++ + S Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSES----SNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 1135 VKAYLDCVSRARN 1147 A D S N Sbjct: 1246 TVALCDLTSTNTN 1258 Score = 38.9 bits (90), Expect = 3e-04 Identities = 41/246 (16%), Positives = 92/246 (37%), Gaps = 6/246 (2%) Query: 806 KNAKTDEERKKCLKDLP-KDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKK 864 + ++ E + + P ++ + + ++KT + ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 865 LLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPE-AKKLLEEEAKESVKAYLDCVSQAR 923 + +EAK ++KA A++ E KE + T E A EE+AK + + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 924 TEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQARTEAEKKECEKLLTPEARKLLEQ 983 + K+E + + P+A+ E + SQ T A+ ++ K + + + + Sbjct: 1128 QVSPKQEQSETVQPQAEPAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Query: 984 EVKKSVKAYLDCVSRARNEKERKACEKLLTPEARKKLEEAKKSVKAYLDCVSQARTEAEK 1043 +V V N + + + K ++SV++ V A T + Sbjct: 1186 S--TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Query: 1044 KECEKL 1049 + L Sbjct: 1244 RSTVAL 1249 Score = 32.7 bits (74), Expect = 0.020 Identities = 35/239 (14%), Positives = 84/239 (35%), Gaps = 10/239 (4%) Query: 629 RARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 686 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 687 ESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQARTEAEKKE 746 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 747 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQARTEAEKKECEKLLTPEAKKLLEQQVLDC 804 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 805 LKNA------KTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKL 857 N+ T + + + K + SV++ V A T + + L Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 265 bits (679), Expect = 2e-91 Identities = 62/268 (23%), Positives = 117/268 (43%), Gaps = 39/268 (14%) Query: 18 KTLIALGLSSVLVGCAIKPVAEVKPQNQQEKPIQVNEKIQTTQKVTPFNFNYSLHVAQAP 77 K L+ + ++LVGC+ I+T + N+ + Sbjct: 14 KCLLGASVVALLVGCS-------------------PHIIETNEVALKLNY-HPASEKVQA 53 Query: 78 QNYRLIGILAPRIQVSDNL-KPYIDKFQNALINQIQTIFEKRGYQTLFF--KDESALTLQ 134 + + I +L P Q SDN+ K Y +KF+N +++ I + +GY+ + D+ + Sbjct: 54 LDEK-ILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYKVINVDSSDKDDFSFA 112 Query: 135 DKRKLFAVLDVKGWVGVLEDLKMNLKDPNNPNL--GTLVDQ------SSGSVWFSFYEPE 186 K++ + + + G + + D K ++ + P L T +D+ +G V + EP Sbjct: 113 QKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKVTILEPM 172 Query: 187 SNRVVHDFAVEVGTF---QAMTYTYKQSNSGGFNSSNSIIHEDLEKNKEDAIHQILNKIY 243 S + F +++ + T S+SGG S+ N DAI LNKI+ Sbjct: 173 SGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMV----KGTDNSNDAIKSALNKIF 228 Query: 244 ALIMKKAVTELTEKNISQHKETIDRMKG 271 A IM++ +LT+KN+ +++ +KG Sbjct: 229 ANIMQEIDKKLTQKNLESYQKDAKELKG 256
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.020 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.4 bits (229), Expect = 2e-24 Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 10/245 (4%) Query: 1 MGEKKESQKVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDVDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFSVNFFAL 114 + DV DS A+ E+ I + D+L+N AG G + +E + FSVN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNI 174 + + ++ I + S V + Y++SK A ++ L LEL +NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFENDERKDSLYALEVNAAKSFYSGV-YQKALSPKAVAQKIVF 233 + ++ PG +++ + + + ++ + + + ++F +G+ +K P +A ++F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 234 LAMSQ 238 L Q Sbjct: 238 LVSGQ 242
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 25.8 bits (56), Expect = 0.042 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 10 YTKYSEKQLFNFLNSIKTKQKRALEKLKEIQAQKQ-RIKKALQFKALHLTENGYTIEEER 68 Y + EK FN + + + +LEK E++ Q ++ K FK + L E G E+ Sbjct: 134 YFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPT 193 Query: 69 EILARAK--DTKNHLCFKNIEDFK 90 +L K L + N D K Sbjct: 194 PLLIHLKLPKNTGMLPYINSNDVK 217
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (373), Expect = 7e-46 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKC-----AQKTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 29.9 bits (67), Expect = 0.025 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 196 YVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAPYSGVAMGEYFR-DHA 254 Y+ +G K T Q+ +L YG EY+V N + + A ++G+ G+Y D+ Sbjct: 56 YMRVGFKGET--QINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYG 113 Query: 255 RHALIIYD 262 R+ ++YD Sbjct: 114 RNYGVLYD 121
>PF06580#Sensor histidine kinase Length = 349 Score = 27.9 bits (62), Expect = 0.015 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 22/146 (15%) Query: 8 YLMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAKIKTDNTQSVEIRHQIE-- 65 L + VV V +W++ +Y F + +QAEI Q + ++ QI Sbjct: 117 ALSIIFNVVVVTFMWSL---LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPH 173 Query: 66 ----------TLLKEAAEKRREMIAEAIQKAAESYDAVIKQKENE---LNQEFEAFAKQL 112 L+ E K REM+ +E ++ L E L Sbjct: 174 FMFNALNNIRALILEDPTKAREML----TSLSELMRYSLRYSNARQVSLADELTVVDSYL 229 Query: 113 QNEKQILKEQLQVQMPVFEDELNKRV 138 Q +++LQ + + ++ +V Sbjct: 230 QLASIQFEDRLQFENQINPAIMDVQV 255
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.005 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 69 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 125 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 126 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 170 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.5 bits (71), Expect = 0.003 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 70 EPEVQILKALKPDFIVVVAYGKILPKEVLTIAP 102 EP +++L +KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>PF01540#Adhesin lipoprotein Length = 475 Score = 31.6 bits (71), Expect = 0.012 Identities = 68/332 (20%), Positives = 127/332 (38%), Gaps = 49/332 (14%) Query: 140 KNCKEKVEKRKKKIKDENSAETLSAKQESEIKKYDKEIEKIRKEMTSKTIRITLDEIKIN 199 K+ ++KV++ KKI DEN +IK+ KE+ K+ +++ S I L Sbjct: 103 KSEQQKVDQANKKIADEN----------LKIKEGAKELLKLSEKIQSFADTIAL------ 146 Query: 200 NICEVSKNKFKVQEDALTNLEKDFDELDEAMKKFDDLKEMELPKDYQTIKDKLESLFSFD 259 I ++ KF++ E L + L++ + + K + + LES F+ Sbjct: 147 TITKLEGKKFQIDETFKKQLISTIELLNKKSAEVKTFATVNTIKKDFLLSE-LESFKEFN 205 Query: 260 IDKEAGQVSE--EIKEHMSKVGREF--------------IEKGIELQKKMPDNACPFCTQ 303 VSE E+K+ SK E I++G + K+ + F Sbjct: 206 TSWLEKIVSEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKEGAKELLKLSEKIQSF-AD 264 Query: 304 EITNNIIQVYTSY-----FNKRIEQFNQDSLEVSGTLKKILEQWNIKE--ILQSFERFES 356 I I ++ + F K++ + + S +K IK+ +L E F+ Sbjct: 265 TIALTITKLERKFQIDEKFKKQLISTIELLNKKSVEVKTFATVNTIKKDFLLSELESFKE 324 Query: 357 F-------MKKDSSTNKESLKNALEQIKVLLEKLQKEVGKKEGAKNEKEFQETDKKLLEN 409 F + + K++ L +IK +K E +K +E ++ + + E Sbjct: 325 FNTSWLEKIVSEWEEVKKAWSKELAEIKAEDDKKLAEENQKI-KNGVEELKKINNEAFEL 383 Query: 410 YEKFQKCVDETRNILKQKKEQKEKLEKLKTEL 441 + K + E K KE+L+ +L Sbjct: 384 SKTVNKTIAELEKKFKIDVSFKEQLKNFADDL 415
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 26/195 (13%), Positives = 70/195 (35%), Gaps = 19/195 (9%) Query: 27 QIELENQSRF-LAQQKEFEKEVKEKRAQYQSHFKMLEQKEEALKEREREQKAKFDDAVKQ 85 +++L ++ F ++E + + Q+ + QKE L ++ E+ + Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 86 ASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKREN 145 + ++ R + + LE + + E EL ++++E+++ E Sbjct: 227 ENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEI 282 Query: 146 NEAESRLKAENEKKLNEKLDLERERIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAE 205 A+ + + + E ++K + +L + + +A Sbjct: 283 LSAKEEYQLVTQ-------LFKNEILDK--LRQTTDNIGLLTLELAKNEERQQASVIRAP 333 Query: 206 LSSQQFQGEVQELAI 220 +S +VQ+L + Sbjct: 334 VS-----VKVQQLKV 343
>PF05844#YopD protein Length = 295 Score = 25.0 bits (54), Expect = 0.035 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSE 74 KQK E Sbjct: 256 KQKVE 260
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 27.0 bits (59), Expect = 0.045 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 49 CFIDARLFGRTAEIANQYLSKGSSVLIEGRLT----YESWMDQTGKKNSRHTIT--VDSL 102 C + ARLFG+T + L I+ Y W+ G R + ++ Sbjct: 168 CALKARLFGKTLSLKPGLLRASYRQFIQSESHEVEIYSDWIASYG-YQRRLVVLDFIEGS 226 Query: 103 QFMDKKSDNPQANAMQ 118 D +++ + ++ Sbjct: 227 LLTDIDANDASCSRLE 242
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.002 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 38 EKDSTSISQNLEKTEIERPNSALSPKQEEANTTTTIAEENPTKDSPLPLETPTQENEPKQ 97 E +T + + E+ QE T+ ++ + ++ P P +EN+P Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 98 ENKQEQEKETKPKQNSASPVQNHQKTLSTPTMGKKPLEYKVAVNSVN 144 K+ Q + Q T + ++P+ VN+ N Sbjct: 1154 NIKEPQSQTNTTADTE-------QPAKETSSNVEQPVTESTTVNTGN 1193 Score = 29.6 bits (66), Expect = 0.008 Identities = 14/95 (14%), Positives = 26/95 (27%) Query: 38 EKDSTSISQNLEKTEIERPNSALSPKQEEANTTTTIAEENPTKDSPLPLETPTQENEPKQ 97 E D T + + ++ K+ +N + E +E P Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 98 ENKQEQEKETKPKQNSASPVQNHQKTLSTPTMGKK 132 + E KPK V++ + T Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 4e-78 Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMIQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIILHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.0 bits (65), Expect = 0.027 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 246 ILSKHPIDPNSKVFSAPNRLVNAFYDP---KDLPLEKGFNFIE 285 I+++ +D N F P + V FYD K L EKG+ E Sbjct: 113 IITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKE 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 4e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 109 bits (274), Expect = 6e-28 Identities = 57/271 (21%), Positives = 113/271 (41%), Gaps = 21/271 (7%) Query: 180 ELEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTYQHLINRHESR 239 L+ K + + K + R +K + L + + + LL + + + S Sbjct: 296 RLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSH 355 Query: 240 VVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKEKIAFKE 296 + L ++ I +D++ + + + K K+ + + +E++ + Sbjct: 356 IELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLY 415 Query: 297 NQINYVKGA---------KEESVLEMFM---PLKNSKIKRPMSGYEVLYYKDFKIGLGKN 344 + + + A K+E + ++ + SK + + I +GKN Sbjct: 416 SVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIYVGKN 475 Query: 345 QKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNMPKDEVIMELAKMLIKMQKDVFNS 403 +N L L+ A +D+W H ++IPGSH+IV ++P + ++E A + K +S Sbjct: 476 NIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLAAYYSKSQNSS 534 Query: 404 -YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 +DYT+ K VK GA VIYS +TI Sbjct: 535 NVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 35.6 bits (82), Expect = 4e-04 Identities = 20/92 (21%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NAPYIGLSKKTPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEIRGAKDLAYK 103 N P I L+ T + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SETFIFRLEMIPKKANLMILD-QEKCVIEAFR 134 S + +E++ + +N+ ++ ++ ++++ + Sbjct: 114 SIYSLI-IEIMGRHSNMTLIRKRDNIIMDSIK 144
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (380), Expect = 1e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLTEALKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 365 bits (937), Expect = e-128 Identities = 119/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSAHIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEP--------LSDSKNTQDLDNSMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.026 Identities = 8/24 (33%), Positives = 13/24 (54%) Query: 30 VAVVGESGSGKSSIANIIMRLNPR 53 + + GESG+GK +A + R Sbjct: 163 LMITGESGTGKELVARALHDYGKR 186
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 553 bits (1426), Expect = 0.0 Identities = 179/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVMPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 349 bits (897), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSTKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.005 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.1 bits (85), Expect = 3e-05 Identities = 44/207 (21%), Positives = 92/207 (44%), Gaps = 14/207 (6%) Query: 50 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 108 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 109 EEKMRNELTHSVNEEKNQLLHAISALDEKMKKSEDHLMALE----KELSAIAIDIAKEVI 164 + L + E K+Q + + + + + + L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 165 LKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 221 + ++ + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 222 AISKGGVMITSSNGSLDGNLMERFKTL 248 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 140 bits (355), Expect = 2e-37 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 57/308 (18%), Positives = 105/308 (34%), Gaps = 53/308 (17%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNVM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTFKTTIKEKTQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTN 270 ++ + + F +L + + T + IF+ + Sbjct: 190 KKEVRIKGHFDI----------KGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKH 239 Query: 271 SSSFSPK-------ESSFIMLLALSYFILLQPLCG---ILADKIKRTQMLMVFAIAGLIV 320 + ++ M+ L I+ + G ++ +K L I +I+ Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 321 TPVVFYGI 328 P I Sbjct: 300 FPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 8e-05 Identities = 48/231 (20%), Positives = 77/231 (33%), Gaps = 35/231 (15%) Query: 179 APSDIQKKETK---NDKEKENLKENPI-DENHKTPNEESFLAIPTPYNTTLNALEPQEGL 234 P++IQ N++E + E P+ TP+E + T + + Sbjct: 999 TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT--------ETVAENSKQESKT 1050 Query: 235 VQISSHSPTHYTIYPKR----SRFNDLSNPTNPTLKEVKQETKEREPTPTKET------- 283 V+ + T T + ++ N +N + + ETKE + T TKET Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 284 -----LAPTMSKPATPKPIMPAPIMPAPIMPASAPNTENDNKTENHKAPNHPIKEESPQE 338 T P + P + P + P END T N K P + E Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND-PTVNIKEPQSQTNTTADTE 1169 Query: 339 NAQEERIKEMIKEEEKEVQ-----NAPSFSPITPTSAKKPVMVKELSENKE 384 +E +++ E N+ +P T A V S NK Sbjct: 1170 QPAKE-TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.4 bits (136), Expect = 4e-11 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKS-NILEIHEMLRKTL 312 F++L IK LPV++ S+ ++ A A ++ K ++ E+ ++ + L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 313 S 313 + Sbjct: 120 A 120
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 269 bits (688), Expect = 8e-75 Identities = 103/394 (26%), Positives = 180/394 (45%), Gaps = 14/394 (3%) Query: 2798 NAVNWLNALFVAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLTKPSLKNNSTDVLQ 2857 + L L + + +A + I + T+ L + K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2858 LNTYTQQMGRLAKLSNFAFFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2917 L+ RL LS F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2918 LWATGVGGVSFVGNGTGTLYGVNVGYDRFIKG---VIVGGYAAYGHSGFYER--ITSSKS 2972 +WA +GG S G +LYG + G D ++ G IVGG+ +YG+S F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2973 DNVNVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSYQYSTWTTNARVNY 3032 +N N G+Y+R F + E F G++++ ++ ALL +NQSY Y ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3033 GYDFMFKNKSVIVKPQIGLRYYYIGMTGLDGVMNNALYNQFKANADPSKKSVLMIDFAFE 3092 GYDF F ++++KP +G+ Y ++G T + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3093 NRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNILSYRKGELYNTFANITTGGEIR 3152 R+Y+ SYFY G+ ++ + V + + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3153 LFKSFYVNAGVGARFGLDYKMINITGNIGMRLAF 3186 L K ++N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 894 bits (2312), Expect = 0.0 Identities = 286/1040 (27%), Positives = 516/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKKTIKPMLQKIDGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY +K L +++GVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQVRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILVNAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSLGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHELGQFELMSVLRKELRS 631 + + E FT + G QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 LPEAKGLDTINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGTSLGEILTQVSKNTKEWLVEGANYRFAGEADNAKESNGEFLIALATAFVLIYMILA 871 GTS G+ + + +N L G Y + G + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 1e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIALLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.048 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 204 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 256 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 257 FALEQNRLTLEYLTNLSVKNLKKTTIDVPNLQLRERQD-LVSLREQISALKYQ 308 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYAEFSKLAECVRPSGFYNQKAKRLINLSENILKDFQSFENFKQEAT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (625), Expect = 4e-77 Identities = 125/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSDGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + +G V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.0 bits (64), Expect = 0.037 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 143 NAAKNGEEHSTEGLGTVNKTGQDIESLYEKMQNATSLADSLNQRS--NEITQVISLIDDI 200 N + ++ + L T+NK +D+ S E ++ ++ N + +SL+ D+ Sbjct: 47 NKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDV 106 Query: 201 AEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKA 242 A+ T + + A I A +G G V + +K ++TQKA Sbjct: 107 AKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKA 148
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.6 bits (63), Expect = 0.018 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 25 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVKDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T QI + K P+ K+L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMNLDGVGQKTANVV 131 E + + +++ + AQKV+ G+ PS + +++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 47.7 bits (113), Expect = 1e-08 Identities = 23/67 (34%), Positives = 27/67 (40%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKKPNHKHKALKKVEKV 142 A Q PP P P P P P P E P KPKPKPK K +++ K Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Query: 143 EEKKVVE 149 + K V Sbjct: 113 DVKPVES 119 Score = 41.9 bits (98), Expect = 1e-06 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 86 PTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPK-KPNHKHKALKKVEKVEE 144 P P + PP P P P E PK P KPK KP K K +KKV++ + Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 145 KKV 147 + V Sbjct: 112 RDV 114 Score = 40.0 bits (93), Expect = 6e-06 Identities = 19/65 (29%), Positives = 27/65 (41%) Query: 95 PTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKKPNHKHKALKKVEKVEEKKVVEEKKEE 154 P P P +P +P+P P+P + K K K + KKV E+ K + Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 155 KKIVE 159 K VE Sbjct: 114 VKPVE 118 Score = 32.3 bits (73), Expect = 0.002 Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 76 PSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKKPN 130 P + P K P P PKP++K + +PK KP + Sbjct: 66 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.9 bits (70), Expect = 0.002 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCISLFLSSPLLGMIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL + AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.019 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>PF03944#delta endotoxin Length = 633 Score = 31.6 bits (71), Expect = 0.004 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.044 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.010 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NFALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.050 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 62 FVQDGIYTTSHNELLIIDG-QQRLTTITLLFIALRDHLNDEDEFLEKFSHQKIQNRYLIN 120 + I S E+ I G Q+RL L + + + L+ E E E+ ++I + + Sbjct: 687 TIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEV 746 Query: 121 SDEKGDKKFKLILSEPDRDILLSLIDK 147 K + ++ ++ ++L +D Sbjct: 747 YQRKEEVVGAEMMRHFEKGVMLQTLDS 773
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.4 bits (107), Expect = 4e-07 Identities = 28/202 (13%), Positives = 65/202 (32%), Gaps = 17/202 (8%) Query: 246 RIKKREGKIDSREI----KREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAEHKLDAKEE 301 ++KR +D+ I + ++ + AP +E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 302 RRYLRDERKKAKATKKAMEFEEREKEHDERDEKETEGRRKALEMDKGNEKVNTKENEQEI 361 + ++ + K + A E + +E + + + + E+ + + +E Sbjct: 1044 SK--QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ------SGSETKET 1095 Query: 362 KQEAIKEPSNGNNATQQGEKQNAPKENKAQKEENKPNSKEEKRRLKEEKKKAKAEQRARE 421 + KE AT + E++ + K Q+ + K+ E + R + Sbjct: 1096 QTTETKET-----ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 422 FEQRAKEHQERDEKELEERRKA 443 KE Q + + + A Sbjct: 1151 PTVNIKEPQSQTNTTADTEQPA 1172 Score = 34.3 bits (78), Expect = 0.001 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 1/105 (0%) Query: 344 EMDKGNEKVNTKENEQEIKQEAIKEPSNGNNATQQGEKQNAPKENKAQKEENKPNSKEEK 403 E++K N+ V+T +A PS +N + AP A ++ + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQA-DVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 404 RRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALEAGK 448 +E K K EQ A E + +E + + ++ + E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ 1087
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.6 bits (121), Expect = 2e-09 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------ALLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEHKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFVMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMIAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.004 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 190 KEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 247 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 248 IFNDKQFTYFKF 259 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 1e-40 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIVAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKVTRYSIT 238 KNP G++V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 430 bits (1108), Expect = e-148 Identities = 168/566 (29%), Positives = 280/566 (49%), Gaps = 53/566 (9%) Query: 10 RLILAIALSFLFIALYSYFFQKPNQTTTTKQETTNNHTATNSNTLNAFSATQAIPQENLL 69 R +L IAL F+ ++ + Q N +Q T T T + A A Q L+ Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQ---TTTTAAGSAADQGVPASGQGKLI 61 Query: 70 STISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVSHLFNPKANPQTPLKELP 127 ++ + + I++ G + + K L Q L S F +A ++ P Sbjct: 62 -SVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDGP 120 Query: 128 LLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGALTIIKTLTF 185 A+ +PL +N A G NE V D T KT Sbjct: 121 DNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTKTFVL 167 Query: 186 YDDLHYDLQIAFKSPN--------NIIPSYVITNGYRPVADLDS-----YTFSGVLLENN 232 Y + + + N + + P D S +TF G Sbjct: 168 KRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTP 226 Query: 233 DKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDSQGFEALIDSEIGTKNPL 289 D+K EK + D + + S +++ + +YF T + G + +G N + Sbjct: 227 DEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLG--NGI 283 Query: 290 GFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFAKGVFVL 338 I K++ N ++GP+ + A++P L ++YG + F ++ +F L Sbjct: 284 AAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKL 343 Query: 339 LDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAPKMKELQEKYKGEPQK 398 L +++ FVGNWG++II++T IVR I+YPL+ SM K++ + PK++ ++E+ + Q+ Sbjct: 344 LKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQR 403 Query: 399 LQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHDLSIMDP 458 + MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHDLS DP Sbjct: 404 ISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDP 463 Query: 459 YFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKFLPLLFTIFLITFPAGLVLYWTTNNIL 518 Y+ILP+LMG +M++ Q ++P T+TDPMQ KI F+P++FT+F + FP+GLVLY+ +N++ Sbjct: 464 YYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLV 523 Query: 519 SVLQQLIINKVLENKKRAHAQNKKES 544 +++QQ +I + LE K+ H++ KK+S Sbjct: 524 TIIQQQLIYRGLE-KRGLHSREKKKS 548
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.014 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 64 KEESVKETNTKEIHQSAEEKKQKLETETPQEE-TITPKPPKKNLKEES 110 + + + T TKE +E+K K+ETE QE +T + K + E+ Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.4 bits (79), Expect = 0.001 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RTKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 292 bits (748), Expect = e-105 Identities = 171/175 (97%), Positives = 173/175 (98%) Query: 1 MKSQVKKILGMSVIATMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MK+QVKKILGMSV+A MVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRF 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKR Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.5 bits (79), Expect = 4e-04 Identities = 28/183 (15%), Positives = 77/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIADRL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + + R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.2 bits (78), Expect = 5e-04 Identities = 29/184 (15%), Positives = 75/184 (40%), Gaps = 12/184 (6%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EVDASKKLAKMQETLDFIADRLKGVKKKKGVELFHKAN----KISGHQALDSDILEKGGI 216 + A LA+ ++ + + R + + + L + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 217 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDILNNPKFATIKAIKNKQV 274 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 275 YKLP 278 ++P Sbjct: 267 QRVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217