>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.036 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.1 bits (88), Expect = 2e-05 Identities = 23/132 (17%), Positives = 46/132 (34%) Query: 2 LKGQIKSLEQSQQVLENEKDELKTEKERLTKEKTELTEKNKTLTTDKENLNNQLNASQKQ 61 + + LE EK L K L K + + + L + A + + Sbjct: 202 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 261 Query: 62 ANDLKNAQQVLENEKDELLRDKDDLTKEKIELTNKNQKLTTEKENLTTDLSNAKNQVIQA 121 +L+ A + N L EK L + L + + L + + + + + Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS 321 Query: 122 RQEKDKLEQKYA 133 R+ K +LE ++ Sbjct: 322 REAKKQLEAEHQ 333 Score = 35.4 bits (81), Expect = 2e-04 Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 1/201 (0%) Query: 6 IKSLEQSQQVLENEKDELKTEKERLTKEKTELTEKNKTLTTDKENLNNQLNASQKQANDL 65 E L+ + +L + L ELTE+ + L+ + +L Sbjct: 59 ADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQEL 118 Query: 66 KNAQQVLENEKDELLRDKDDLTKEKIELTNKNQKLTTEKENLTTDLSNAKNQVIQARQEK 125 + + LE + + + + L + L K +L L A N + Sbjct: 119 EARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 178 Query: 126 DKLEQKYASYKKLERLYEVFLEVKGCLNFKFVPQTHSAMDLIASVLSDSKYYLEELYKKA 185 LE + A+ + + E LE + + + A+ L+ K LE+ + A Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA-LAARKADLEKALEGA 237 Query: 186 SQELSDKRSDKGEKLAELFDL 206 + + AE L Sbjct: 238 MNFSTADSAKIKTLEAEKAAL 258 Score = 31.6 bits (71), Expect = 0.003 Identities = 27/137 (19%), Positives = 56/137 (40%) Query: 2 LKGQIKSLEQSQQVLENEKDELKTEKERLTKEKTELTEKNKTLTTDKENLNNQLNASQKQ 61 + + LE EK L+ + L K + + + L + A + + Sbjct: 237 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAE 296 Query: 62 ANDLKNAQQVLENEKDELLRDKDDLTKEKIELTNKNQKLTTEKENLTTDLSNAKNQVIQA 121 DL++ QVL + L RD D + K +L ++QKL + + + + + + Sbjct: 297 KADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 356 Query: 122 RQEKDKLEQKYASYKKL 138 R+ K +LE ++ ++ Sbjct: 357 REAKKQLEAEHQKLEEQ 373 Score = 28.1 bits (62), Expect = 0.042 Identities = 25/129 (19%), Positives = 51/129 (39%) Query: 1 MLKGQIKSLEQSQQVLENEKDELKTEKERLTKEKTELTEKNKTLTTDKENLNNQLNASQK 60 + + LE EK L+ EK L + L ++L D + + Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 61 QANDLKNAQQVLENEKDELLRDKDDLTKEKIELTNKNQKLTTEKENLTTDLSNAKNQVIQ 120 + L+ ++ E + L RD D + K +L ++QKL + + + + + Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA 390 Query: 121 ARQEKDKLE 129 +R+ K ++E Sbjct: 391 SREAKKQVE 399
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.7 bits (92), Expect = 1e-05 Identities = 30/213 (14%), Positives = 60/213 (28%) Query: 13 QVRKELEARIDELEDGNENLTKANDELTTEKERLTKEKAELTDKNQKLTIEKENLNNQLD 72 + + + L L K L K + + + + + L + Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 73 ASQMQVNVLKNSHQVLEKEKAELLKDKDKLTKEKTELTEKNKTITKEKDNLTKANAELKT 132 A + + L+ + + L EK L + + K + + Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 133 ENDKLNHQVIALNKEQGSLKQERVQLQGERGVLEKSCTNLEKENQHLTEKLKKLESTQKN 192 + L + AL Q L++ LE E L + LE + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 193 LENSNDQLLQAKEKIAKENTDLEREMARLKSLK 225 L + L + + + LE E +L+ Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Score = 39.7 bits (92), Expect = 1e-05 Identities = 38/247 (15%), Positives = 75/247 (30%), Gaps = 4/247 (1%) Query: 16 KELEARIDELEDGNENLTKANDELTTEKERLTKEKAELTDKNQKLTIEKENLNNQLDASQ 75 + ++ + + EL K L K + + + + + L + A Sbjct: 95 SNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALA 154 Query: 76 MQVNVLKNSHQVLEKEKAELLKDKDKLTKEKTELTEKNKTITKEKDNLTKANAELKTEND 135 + L+ + + L EK L + + K + + + Sbjct: 155 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 214 Query: 136 KLNHQVIALNKEQGSLKQERVQLQGERGVLEKSCTNLEKENQHLTEKLKKLESTQKNLEN 195 L + AL + L++ LE E L + +LE + N Sbjct: 215 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN 274 Query: 196 SNDQLLQAKEKIAKENTDLEREMARLKSLKATDKSELDLQNRRFKSAIEDLKRQNRKLEE 255 + + + E LE E A L+ + R ++ E K +LE Sbjct: 275 FSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK----QLEA 330 Query: 256 ENIALKE 262 E+ L+E Sbjct: 331 EHQKLEE 337 Score = 33.5 bits (76), Expect = 8e-04 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 3/235 (1%) Query: 47 TKEKAELTDKNQKLTIEKENLNNQLDASQMQVNVLKNSHQVLEKEKAELLKDKDKLTKEK 106 T ++ ++ K IE L + LK+ + L +E + + K K Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 107 TELTEKNKTITKEKDNLTKANAELKTENDKLNHQVIALNKEQGSLKQERVQLQGERGVLE 166 +E K + + K +L KA + + ++ L E+ +L + L+ Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 167 KSCTNLEKENQHLTEKLKKLESTQKNLENSNDQLLQAKEKIAKENTDLEREMARLKSLKA 226 T + + L + LE+ Q LE + + + + + LE E A L + KA Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 227 T---DKSELDLQNRRFKSAIEDLKRQNRKLEEENIALKERVDGLKEQLSKQLKPQ 278 + + I+ L+ + LE L++ ++G + Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 283 Score = 30.0 bits (67), Expect = 0.010 Identities = 50/248 (20%), Positives = 94/248 (37%) Query: 15 RKELEARIDELEDGNENLTKANDELTTEKERLTKEKAELTDKNQKLTIEKENLNNQLDAS 74 K LEA L +L KA + + + L + L + L L+ + Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 75 QMQVNVLKNSHQVLEKEKAELLKDKDKLTKEKTELTEKNKTITKEKDNLTKANAELKTEN 134 + LE EKA L +K L + L +++ ++ D +A +L+ E+ Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEH 332 Query: 135 DKLNHQVIALNKEQGSLKQERVQLQGERGVLEKSCTNLEKENQHLTEKLKKLESTQKNLE 194 KL Q + SL+++ + + LE LE++N+ + L Sbjct: 333 QKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASR 392 Query: 195 NSNDQLLQAKEKIAKENTDLEREMARLKSLKATDKSELDLQNRRFKSAIEDLKRQNRKLE 254 + Q+ +A E+ + LE+ L+ K + E + ++ + LK + K Sbjct: 393 EAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQA 452 Query: 255 EENIALKE 262 EE L+ Sbjct: 453 EELAKLRA 460
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1046 bits (2706), Expect = 0.0 Identities = 355/569 (62%), Positives = 444/569 (78%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 222 bits (568), Expect = 8e-78 Identities = 57/145 (39%), Positives = 90/145 (62%), Gaps = 7/145 (4%) Query: 8 VESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEI 67 ++SF +DHT++ AP VR+A + GD I +D+RF PNKD + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120 +RNH ++D SPMGC+TGFY++++ + ++ + M+DVLK ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAQILARAFLD 145 NE QCG AA H+L+ A+ +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 7e-05 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 8/150 (5%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDAFESLNLDLSKQESDLDKVADNVKKQENDAFNMPT 109 P ET ++ T ++ + DA E+ + + V N Q N+ + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTHQTQTEMKTTEETQEAKKELKA-VEHTPMSAQKESQAVAKKETPHEKPKATPKDKESH 168 +T +TQT T E +++ K E T + SQ K+E +E+ Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN- 1149 Query: 169 KDKAKHAAKEPKAK--KEAHKEVPKKANSK 196 KEP+++ A E P K S Sbjct: 1150 --DPTVNIKEPQSQTNTTADTEQPAKETSS 1177
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 29.3 bits (65), Expect = 0.016 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 123 GEELTTREKGFKAVKEFLNEQLENIDLNYPNLVVAYEPIWAIGTKKS----ASLEE 174 E TT K F +K+ LN +L N + N N + EPI+A KK ASLEE Sbjct: 855 QAEATTLSKNFSDIKKELNAKLGNFN-NNNNNGLKNEPIYAKVNKKKAGQAASLEE 909
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 62.4 bits (151), Expect = 2e-13 Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKVLYNNIKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + I++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.5 bits (113), Expect = 5e-08 Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLRKKSVKKEESAFKIPFYL----- 200 + ++ + + F+ L H ++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTTAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + TT G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 67.0 bits (163), Expect = 1e-13 Identities = 50/290 (17%), Positives = 94/290 (32%), Gaps = 14/290 (4%) Query: 186 ELENLGDLEALVQEESNNEEQLLPTLNAQ--EEKEEVKEEVKETPQEEEKPKEETQEGET 243 E+E + N Q EE V E P + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 244 LKDKEVSKELETQEELEILKEETQEGETLKDKEVSKELETQEELEIPKEETQEQAKEQEP 303 K + + E Q+ E Q E K+ + + + TQ E+ + ++ + + Sbjct: 1044 SKQESKTVEKNEQDATETTA---QNREVAKEAKSNVKANTQT-NEVAQSGSETKETQTTE 1099 Query: 304 IKEETQEIKEEKQ----EKTQDSPSAQELEAMQELVKEIQENSNGQEDKKETQENAETPQ 359 KE KEEK EKTQ+ P + ++ E + + + N + PQ Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 360 EEKQESAET--PQEKETQELETPQETPQDVETPQENTETPQEKETQELETPQETPQETPQ 417 + +A+T P ++ + +E P V T E P+ + P + + + Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ-PTVNSESSNK 1218 Query: 418 EKETQKLE-TPQESAETPQKETQEKKAQEDHYESIEDIPEPVMAQAMGEA 466 K + P + ++ + V++ A +A Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA 1268 Score = 57.0 bits (137), Expect = 2e-10 Identities = 55/322 (17%), Positives = 114/322 (35%), Gaps = 21/322 (6%) Query: 227 TPQEEEKPKEETQEGETLKDKEVSKELETQEELEILKEETQEGETLKDKEVSKELETQEE 286 T Q +K E TL D SK + ++ G K K + + Sbjct: 925 TLQVADKTGEPNHNELTLFDA--SKAQRDHLNVSLVGNTVDLG-AWKYKLRNVNGRY--D 979 Query: 287 LEIPKEETQEQAKEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQE 346 L P+ E + Q + I + + + A+ EA + + Sbjct: 980 LYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 347 DKKETQENAETPQEEKQESAETPQEKETQELETPQETPQDVETPQENTETPQEKETQELE 406 + +++ ++T ++ +Q++ ET + E + +T + + KETQ E Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 407 TPQETPQETPQEKE----TQKLETPQESAETPQKETQ--------EKKAQEDHYESIEDI 454 T +ET +EK + E P+ +++ K+ Q E + D +I++ Sbjct: 1100 T-KETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 455 PEPVMAQAMGEALPFLNEAVAKTPNNENDTETPKESVIKTPQEKEGSDKTSSPLELRLNL 514 A E + + P E+ T SV++ P+ + + Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP---TVNSES 1215 Query: 515 QDLLKSLNQESLKSLLENKTLS 536 + K+ ++ S++S+ N + Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPA 1237
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 276 bits (707), Expect = 1e-95 Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 43/285 (15%) Query: 1 MERSLIFKKVRVYSKMLVALGLSSVLVGCAMNPSAETKTQNDAKNQQPVQTHERMKTSSE 60 M+ + FK + K L+ + ++LVGC S N+ + H +SE Sbjct: 1 MKANNHFKDF-AWKKCLLGASVVALLVGC----SPHIIETNEVAL--KLNYH----PASE 49 Query: 61 HVTPLDFNYPIHIVQAPQNHHIVGILAPRIQVSDNL-KPYIDKFQDALANQIQTIFEKRG 119 V LD + +L P Q SDN+ K Y +KF++ +++ I + +G Sbjct: 50 KVQALD--------------EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQG 95 Query: 120 YQVLRF--QDEKALSAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVNQ-- 173 Y+V+ D+ S K++ + + + G + + D K ++ + P L T +++ Sbjct: 96 YKVINVDSSDKDDFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKME 155 Query: 174 ----SSGSVWFNFYEPESNRVVHDFAVEVGTF---QAMTYTYKQSNSGRFNSSNSIIHED 226 +G V EP S + F +++ + T S+SG S+ Sbjct: 156 GVLIPAGFVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMV----K 211 Query: 227 LEKNKEDAIHQILNKIYALIMKKAVTELTEKNISQYKEVIDKMKG 271 N DAI LNKI+A IM++ +LT+KN+ Y++ ++KG Sbjct: 212 GTDNSNDAIKSALNKIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>PF03944#delta endotoxin Length = 633 Score = 30.8 bits (69), Expect = 0.007 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASRFLALMPLSAKKSQNLN 161 + L +L ++Q + L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.8 bits (62), Expect = 0.011 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 18 NAFVNFFKNNLADKRYDALGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLV 77 A N L + Y L+ L + S + G + I IN ++ Sbjct: 70 QALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVV-QYGFLISGEAIKPDIKKINPIEGA 128 Query: 78 EKLFKKQS 85 +++F +S Sbjct: 129 KRIFSIKS 136
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 31.4 bits (71), Expect = 0.008 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAQLAKY--KLKDLE 326 S + EE+ E +E L K E Q+ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 3e-05 Identities = 39/222 (17%), Positives = 84/222 (37%), Gaps = 8/222 (3%) Query: 952 QARNEEERKACEKLLTPEARKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARK 1011 + NEE + E P ++ + + ++KT + ++ T + R+ Sbjct: 1011 PSNNEEIARVDE---APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 1012 KLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSR-AR 1070 +EAK +VKA A++ +E KE + T E + ++E K V + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1071 NEKEKKECEKLLTPEARKLLEQQALDCLKSAK----TEAERKRCVKDLPKDLQKKVLAKE 1126 K+E + + P+A E +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 1127 SVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKA 1168 +V V N + + + K + S+++ Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Score = 41.2 bits (96), Expect = 4e-05 Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 11/230 (4%) Query: 706 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 765 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 766 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVL-- 823 A++ +E KE + T E + +++ KT E K + PK Q + + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 824 ----AKESVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRAR 877 A+E+ + SQ T A+ ++ K + ++ + E+ + V Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG--NSVVENP 1199 Query: 878 NEKEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKL 927 + + E+ + ++SV++ V A T + + L Sbjct: 1200 ENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 37.0 bits (85), Expect = 0.001 Identities = 42/253 (16%), Positives = 87/253 (34%), Gaps = 19/253 (7%) Query: 890 TPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDC 949 P + + + ++KT + ++ T + +++ +EAK ++KA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 950 LSQARNEEERKACEKLLTPEARKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA 1009 A++ E K + T E + +EE +AK E EK + +T + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE-------------KAKVETEKTQEVPKVTSQV 1129 Query: 1010 RKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRA 1069 K E+++ T K+ + T + +E +V+ + + Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 1070 RNEKEKKECEKLLTPEARKLLEQQALDCLKSAKTEAERKRCVKDLPKDLQKKVLAKE--S 1127 E + TP + S K + +R V+ +P +++ + S Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSES----SNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 1128 VKAYLDCVSRARN 1140 A D S N Sbjct: 1246 TVALCDLTSTNTN 1258 Score = 32.3 bits (73), Expect = 0.022 Identities = 34/239 (14%), Positives = 84/239 (35%), Gaps = 10/239 (4%) Query: 622 KARNEKEKKECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 679 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 680 ESVKAYRDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 739 E+ + + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 740 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDC 797 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 798 LKNA------KTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKL 850 N+ T + + + K + SV++ V A T + + L Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 868 bits (2243), Expect = 0.0 Identities = 512/522 (98%), Positives = 515/522 (98%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EEAVKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EEAV+QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMIASNE 360 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVM+ASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIRREKVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.8 bits (74), Expect = 0.002 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 13/116 (11%) Query: 24 AINTALLPSEYKKLVALGFKKLYQRHDDKEVTEEEKKFATNALREKLRNDRARAEQIQKN 83 A+N AL+ +Y++ L KKL D + EE+KK L ++ EQ QK Sbjct: 112 AVNFALMTRDYQEF--LKTKKLIVDAPDPKELEEQKK--------ALEKEKEAKEQAQK- 160 Query: 84 IEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEM 139 A + K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 161 --AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (316), Expect = 2e-37 Identities = 79/250 (31%), Positives = 113/250 (45%), Gaps = 11/250 (4%) Query: 5 GKNVLITGASKGIGAEIARTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDA 64 GK ITGA++GIG +ARTLAS G + N E + + + L+ + A D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 ASESDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCRE 124 + E I + G + LVN AGV+R L + E++ N T F R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 ALKVMSKSRFGSVVNIASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVT 184 K M R GS+V + S Y++SK + +K E A NIR N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 185 PGFIETDMNANL--KDELKADYVK--------NIPLNRLGSAKEVAEAVAFLLSDHSSYI 234 PG ETDM +L + +K IPL +L ++A+AV FL+S + +I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 TGETLKVNGG 244 T L V+GG Sbjct: 247 TMHNLCVDGG 256
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 27.2 bits (60), Expect = 0.019 Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 34 GKLIGGGVGGFVGDKIGGAIGVPGGPVGIKLGRFLG 69 G G GG D++ + GG GI G LG Sbjct: 220 GSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.3 bits (65), Expect = 0.021 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 14/100 (14%) Query: 198 SSAQNIKINEIANDLESGKIVGKKIISDALLGVVSCCFMDDKNLKDLKKLLSQDQINLSN 257 +S NI INE+A+ G IV A LG DL+ LS++ + + Sbjct: 247 NSDSNIVINELASGRRQGGIVYNGDAVYAALG------------GDLRDELSEE--QIPD 292 Query: 258 AITTAINNSFINEINLTSAIIDKIEYHFRDNTFHFIFDVS 297 I I+ + L +I+K + +F+ IFD++ Sbjct: 293 GNNFHIVQPKISPVALDLLVINKQQSNFQKEAHEIIFDLA 332
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.9 bits (96), Expect = 8e-06 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGDLSFESGEETPSQSVQIPTTGSDGNESHVVPLSKIQNIMRDR 324 + AE +K + G S G+E V+ + ++I +++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 46.2 bits (109), Expect = 4e-07 Identities = 48/337 (14%), Positives = 108/337 (32%), Gaps = 40/337 (11%) Query: 15 ELDKRAAGLDERENQLNKRQKQLKTDIDAFEQEKEAYLKNQKEFEDFMEDKEVFKKEQVQ 74 L + + L L +L ++ +++ K+ E +++ E K + + Sbjct: 68 TLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEK 127 Query: 75 KVKESLRTYEKEQKELILETIGKQLQEQQESLNKDYGKKLESIKGCSDRLENDLKTQFDA 134 ++ ++ + ++L + K + Sbjct: 128 ALEGAMNFS-------------TADSAKIKTLEAEKAALAAR------------KADLEK 162 Query: 135 QLERWEQNFKGYEQQLTGILNDKAQLDLNKERFNAQKQAFENHIKQREEEIKKENRNEIE 194 LE ++ + +KA L+ + + N +IK E Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA-EKA 221 Query: 195 RLKEEKNGLHRQLDEMADEMNALIQEIRELNKKIDWQKDYDMEKLEQDNRDLENCKEDLL 254 L K L + L+ + A +I+ L + LE +LE E + Sbjct: 222 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEK--------AALEARQAELEKALEGAM 273 Query: 255 AANENLKNRIQELENEKNKLDPRDERIKELEEGKRELEGIRAQKEDAEQKYNILLARNNQ 314 + +I+ LE EK L+ E + + + + + A ++ + + Q Sbjct: 274 NFSTADSAKIKTLEAEKAALE------AEKADLEHQSQVLNANRQSLRRDLDASREAKKQ 327 Query: 315 LEVGLVSLEADGNMLKERFENLKNIYVGAEDLKKRQE 351 LE LE + + ++L+ + + KK+ E Sbjct: 328 LEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLE 364 Score = 40.8 bits (95), Expect = 2e-05 Identities = 55/297 (18%), Positives = 105/297 (35%), Gaps = 23/297 (7%) Query: 3 ENEELELGARAAELDKRAAGLDERENQLNKRQKQLKTDIDAFEQE-KEAYLKNQKEFEDF 61 E E+ L AR A+L+K G + + K L+ + A E E + Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 62 MEDKEVFKKEQVQKVKESLRTYEKEQKELILETIGKQLQEQQESLNKDYGKKLESIKGCS 121 D K + +K + R + E+ + ++L + Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA--- 263 Query: 122 DRLENDLKTQFDAQLERWEQNFKGYEQQLTGILNDKAQLDLNKERFNAQKQAFENHIK-- 179 + + LE ++ + +KA L+ K Q Q + + Sbjct: 264 ---------ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSL 314 Query: 180 ----QREEEIKKENRNEIERLKEEKNGLHRQLDEMADEMNALIQEIRELNKKIDWQKDYD 235 E KK+ E ++L+E+ + +++A RE K+++ + Sbjct: 315 RRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS----REAKKQLEAEHQKL 370 Query: 236 MEKLEQDNRDLENCKEDLLAANENLKNRIQELENEKNKLDPRDERIKELEEGKRELE 292 E+ + ++ + DL A+ E K + LE +KL ++ KELEE K+ E Sbjct: 371 EEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTE 427 Score = 37.7 bits (87), Expect = 2e-04 Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 19/297 (6%) Query: 71 EQVQKVKESLRTYEKEQKELILETIGKQLQEQQ-ESLNKDYGKKLESIKGCSDRLENDLK 129 + ++KV+E +E E L L+ + + N + ++L + K + + L Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLS 109 Query: 130 TQFDAQLERWEQNFKGYEQQLTGILNDKAQLDLNKERFNAQKQAFENHIKQREEEIKKEN 189 + ++++ E E+ L G +N + A+K A E+ ++ Sbjct: 110 EK-ASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE-GA 167 Query: 190 RNEIERLKEEKNGL---HRQLDEMADEMNALIQEIRELNKKIDWQKDYDMEKLEQDNRDL 246 N + L L+ E+ ++ + D K++ + Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA-------DSAKIKTLEAEK 220 Query: 247 ENCKEDLLAANENLKNRIQELENEKNKLDPRDERIKELEEGKRELEGIRAQKEDAEQKYN 306 + L+ + + K+ + LE + ELE E A Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE---KALEGAMNFST 277 Query: 307 ILLARNNQLEVGLVSLEADGNMLKERFENLKNIYVGAEDLKKRQENIKEQIAKTKPK 363 A+ LE +LEA+ L+ + + L + L++ + +E + + + Sbjct: 278 ADSAKIKTLEAEKAALEAEKADLEHQSQVLN---ANRQSLRRDLDASREAKKQLEAE 331
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 32.6 bits (74), Expect = 0.010 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 14/118 (11%) Query: 264 LKIESVEKEGENLKIRFKPALDKNKMEILKKKSQLKEGSDLGVL--EDLDTQNEESLINF 321 I +EK N+ I+ + + + +KS L + + LD Q+ ++ N Sbjct: 763 KFISYMEKYINNINIKTREFIQRCTNINDNEKSILINSYTFKTIDFKFLDIQSIKNFFNS 822 Query: 322 ISKQ--NKQTSPNN-----SEKKETITIKDISGDDFIIDYNPSIKE-----SDAFYLN 367 +Q + SP S+ + I+DISG + +I Y SI+ ++ YL Sbjct: 823 QVEQVMKEILSPYQLLLFASKGPNSNIIEDISGKNTLIQYTESIELVYGVNGESLYLK 880
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.002 Identities = 25/145 (17%), Positives = 48/145 (33%) Query: 27 GATKKELKQLQVNSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKALQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKPLKSNA 171 + ++ E ++ E+ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 142 bits (359), Expect = 8e-44 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 22/168 (13%) Query: 22 NMDKETVAGDVSAKAVQSAPVSTETVQEKQEPKQEPAPVVEKKPAVESGTIIASIYFDFD 81 D ++ VS + Q P PAP V+ K T+ + + F+F+ Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVV------APAPAPAPEVQTK----HFTLKSDVLFNFN 226 Query: 82 KYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALI 138 K +K Q LD++ + V++ G TD GS YNQ L +R SV + LI Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 139 IKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYKENRRVDVKL 177 KG+ D I GE+ P K R +C +RRV++++ Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.010 Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 9/148 (6%) Query: 27 LERHNEEAEKILLDLGKKNEQIIDLNLEDLPSDEKKDEKVAEKVEEKKDEKVVEKNATDK 86 LE+ E A K + L E + ++ E Sbjct: 160 LEKALEGAMNFSTADSAKIKT---LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 87 EGDFIDPKEQEESLENIFSSL-NDFQEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQK 145 E + ++ LE N + + +K E Q L++ N Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 146 NQEM-----LKGLQQNLDQFAQKLESVK 168 + L+ + L+ LE Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQS 304
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 30.3 bits (68), Expect = 0.008 Identities = 11/33 (33%), Positives = 20/33 (60%) Query: 70 DPEVQILKDLKPDFIVVVAYGKILPKEVLSIAP 102 +P +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>PF01540#Adhesin lipoprotein Length = 475 Score = 30.1 bits (67), Expect = 0.037 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 30/260 (11%) Query: 363 IDSKSSGKLKELEKQITKGIE---KFDEQIAYWQKK-----TKLEEQLKESEKIRKKSQN 414 I ++ KL E ++I +G + K E+I + TKLE + + EK +K+ + Sbjct: 230 IKAEDDKKLAEENQKIKEGAKELLKLSEKIQSFADTIALTITKLERKFQIDEKFKKQLIS 289 Query: 415 IIDTYADKDY-LDKKEKLQENQK--ALIDLKQSKEGFLTFIKELKRVVNFESKENMEEKN 471 I+ K + + +K L +L+ KE ++++++ E E K Sbjct: 290 TIELLNKKSVEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIV-------SEWEEVKK 342 Query: 472 SYDKVYNQLKQNICKKLEEIDADIKNGRFKSDEENIEKLESEQQTLHQEIREFLKE---K 528 ++ K ++K KKL E + IKNG E ++K+ +E L + + + + E K Sbjct: 343 AWSKELAEIKAEDDKKLAEENQKIKNG-----VEELKKINNEAFELSKTVNKTIAELEKK 397 Query: 529 GVIDEDNIEELERANYQLVGIEREITDLEREIEEIANKIKGFSYEDIDKNIEEFKNQINE 588 ID E+L+ L+ R+I E + + +GF+ +++ E N Sbjct: 398 FKIDVSFKEQLKNFADDLLDKSRQI----DEFTTVTSTQEGFTLAELESFKEITTTWFNG 453 Query: 589 ELSKINSAFEEISKNHKEVK 608 S+ E KE+ Sbjct: 454 MKSEWARVQEAWKDQLKEIS 473
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 28/195 (14%), Positives = 70/195 (35%), Gaps = 19/195 (9%) Query: 27 QIELENQSRF-LAQQKEFEKEVKEKRAQYQSHFKALEQKEEALKEREKEQKAKFDDAVKQ 85 +++L ++ F ++E + + Q+ + QKE L ++ E+ + Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 86 ASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKDAEIERLKREN 145 + ++ R + + LE + + E EL +++E+++ E Sbjct: 227 ENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEI 282 Query: 146 NEAESRLKAENEKKLNEKLETERERIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAE 205 A+ + + NE L+ R+ + +L + + +A Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNI---------GLLTLELAKNEERQQASVIRAP 333 Query: 206 LSSQQFQGEVQELAI 220 +S +VQ+L + Sbjct: 334 VS-----VKVQQLKV 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 3e-23 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVSCTFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V T N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.2 bits (68), Expect = 0.011 Identities = 7/45 (15%), Positives = 16/45 (35%) Query: 122 GSHGEYFRNRASTKNIQFPYSHYLAHICLGILYTRSASSGIDETE 166 GSH Y+ + Q + I + Y+ + ++ + Sbjct: 547 GSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRD 591
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (570), Expect = 4e-78 Identities = 63/148 (42%), Positives = 93/148 (62%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATTSFT 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 25.9 bits (57), Expect = 0.037 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 IHIHNLVFETILGILEFERLKPQKISVNLDLFYTQLPN-----KTYLDYMEIQELIQKMM 61 +I +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.042 Identities = 19/177 (10%), Positives = 46/177 (25%), Gaps = 4/177 (2%) Query: 1526 QIIETKSKGIEQFRNAHKLGLNELEDFNMGSSNASEMKAEATGNPLIIEEVKLRAEIKSE 1585 + S + L A E + + L AE + Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA-DSAKIKTLEAEKAAL 188 Query: 1586 EAKYKAFNKEHYFNEESLKNNASQWDYLKQELKDLETLQSSVIIPTHTEIKLYDLKNEES 1645 EA+ K ++++ L+ E L ++ + + +S Sbjct: 189 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL---EKALEGAMNFSTADS 245 Query: 1646 KDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLND 1702 + ++ ++ A + + L + E A + ++L Sbjct: 246 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 114 bits (286), Expect = 2e-29 Identities = 70/358 (19%), Positives = 145/358 (40%), Gaps = 25/358 (6%) Query: 97 AKDLAYKSETFILRLEMIPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPLN-TY 153 + ++ ++ + + L + K + + I++ F FN N +G LN Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMS 268 Query: 154 EHQEENLDFKGLLDILEKDFLSYQHKE-LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNL 212 + + + + +LE + + + L+ K + + K + R +K + L + Sbjct: 269 KEDYKKIQYDSSSKLLENFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKK 328 Query: 213 QLEAKELQTQASLLLTYQHLINKHESRVVLRDFED---KECTIEIDKSMPLNAFINKKFT 269 + + LL + + K S + L ++ I +D++ + + + Sbjct: 329 CEDKDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYK 388 Query: 270 LSKKKKQKSQFLYLEEENLKEKIAFKENQMNYVKGA---------KEESVLEMFM---PV 317 K K+ + + +E++ + + + + A K+E + ++ + Sbjct: 389 KYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKI 448 Query: 318 KNSKTKRPMSGYEVLYYKDFKIGLGKNQKENVKL-LQDARANDLWMHVRDIPGSHLIVFC 376 SK + + I +GKN +N L L+ A +D+W H ++IPGSH+IV Sbjct: 449 YKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKN 508 Query: 377 QKNTPKDEIIMELAKMLIKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 + P + ++E A + K +S +DYT+ K VK GA VIYS +TI Sbjct: 509 IMDIP-ESTLLEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 33.7 bits (77), Expect = 0.001 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NMPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQTNIIDNDRI--LEIKGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ + +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SETFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SIY-SLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (331), Expect = 7e-40 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 6/203 (2%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIA-LSYLFDT 215 Q+ L + V I +A V + + + K +A + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST--KTDAVATIKYKVDG 199 Query: 216 PDFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 200 TPSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.8 bits (66), Expect = 0.014 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 10/74 (13%) Query: 191 KEEIKEKEEETITIGDNTNAMRIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMP 248 KE+I+E++++ I D A+ + Q + ALK + R + K+SK +MP Sbjct: 365 KEKIREEKQKIIL--DQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMP 416 Query: 249 EEIFNDKQFTYFKF 262 EIF+D FTYF F Sbjct: 417 SEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 52.1 bits (125), Expect = 9e-10 Identities = 53/346 (15%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKRSELY-----------LL 42 L+TGA G +G + + + V L R EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMSDLSAYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + AY NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (381), Expect = 8e-50 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.016 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKVEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (925), Expect = e-126 Identities = 119/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNSS-----------NLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ S SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSTKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.005 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 553 bits (1426), Expect = 0.0 Identities = 179/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVLKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPITPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 350 bits (900), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 38.2 bits (88), Expect = 1e-05 Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 17/212 (8%) Query: 45 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 103 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 104 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSQDHLMALE----KELSAIAIDI 159 G++EG + L + E K+Q + + + + Q L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 160 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---K 216 A++VI + ++ + + + L + L + L+V+P D +++ L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 217 LESNEAISKGGVMITSSNGSLDGNLMERFKTL 248 L + + GG +++ G LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 142 bits (360), Expect = 4e-38 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.8 bits (98), Expect = 3e-06 Identities = 58/308 (18%), Positives = 106/308 (34%), Gaps = 53/308 (17%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTFKTTIKEETQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTN 270 ++ + + F +L + + T + IF+ + Sbjct: 190 KKEVRIKGHFDI----------KGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKH 239 Query: 271 SSSFSPK-------ESSFIMLLALSYFILFQPLCG---MLADKIKRTQMLMVFAVAGLIV 320 + ++ M+ L I+F + G M+ +K L + +I+ Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 321 TPVVFYGI 328 P I Sbjct: 300 FPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.021 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 3/119 (2%) Query: 249 PKKNRFDGLSNPTNPTLKEVKQETKEREPTPTTLKPITPTLAPNTENDNKTE--NHKTPN 306 P + D S P+N E P P T T T+A N++ ++KT N + Sbjct: 1000 PNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDAT 1059 Query: 307 HPTKEENVQENAQKETIEENIKEEEKEAQNAPSFSPITPTSAKKPVMVKELSENKEILD 365 T + K ++ N + E AQ+ T K+ V++ + K + Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEV-AQSGSETKETQTTETKETATVEKEEKAKVETE 1117
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 25.6 bits (56), Expect = 0.011 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 1 MKTIRNSVFIGASLLGGCASVET 23 MK +++ +G +LL GCAS T Sbjct: 1 MKLRLSALALGTTLLVGCASSGT 23
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.010 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NFALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.043 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.1 bits (68), Expect = 0.004 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 87 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALF 146 L Y F L+L+ +LPFS S + + +L PLL V AL+A+ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 147 SSLL 150 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.2 bits (117), Expect = 5e-09 Identities = 24/56 (42%), Positives = 28/56 (50%) Query: 84 PKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 63 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 45.7 bits (108), Expect = 6e-08 Identities = 38/228 (16%), Positives = 69/228 (30%), Gaps = 53/228 (23%) Query: 84 PKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEEKKIVEQKVEQKKVEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQT 203 + + K E + ++ + + + Sbjct: 109 QPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ------ 162 Query: 204 RRDIDELYGEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLH 263 YP A L +G V+F + Sbjct: 163 ---------------------------------------YPARAQALRIEGQVKVKFDVT 183 Query: 264 PNGDITDLKIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 311 P+G + +++I+ M + ++ + +P + ++ I + Sbjct: 184 PDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 38.0 bits (88), Expect = 2e-05 Identities = 16/54 (29%), Positives = 23/54 (42%) Query: 74 QDPSKNTQGTPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q + +P P P P+ PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 33.0 bits (75), Expect = 0.001 Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 74 QDPSKNTQGTPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P + P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 30.3 bits (68), Expect = 0.008 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPSKNTQGTPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.2 bits (62), Expect = 0.022 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 25 NQTTELHHKNPYELLVATILSAQCTDARVNKITPKLFEKYPSVKDLAL-----ASLEEVK 79 N+ E+ K E A ++ + T +I + K P+ K+L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 80 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 131 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 243 bits (622), Expect = 1e-76 Identities = 125/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQNL---G 411 ++S L ++ TVN + T N + + +G + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.009 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYADFSKLAECVRPSGFYNQKAKRLIDLSRNILKDFQSFENFKQEVT 119 L + + +A+ + + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.021 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDEGLTTIDDL-----QSLKAQGNLSEY--DILDIQ 255 LAR+ + K+ + + L + + + ++A L Y + I+ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 5e-10 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 18 ASEKVYAIFNVKAVQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQEKQAQSDSTE 77 A+ K+ K ++ IV I V EG V+KGDVLL L +A + T+ Sbjct: 86 ANGKLTHSGRSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQ 140 Query: 78 QQLIFAKKQYQRYSKTGGAVDKNTLESYEFN 108 L+ A+ + RY +++ N L + Sbjct: 141 SSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Score = 29.4 bits (66), Expect = 0.013 Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 21/150 (14%) Query: 70 QAQSDSTEQQLIFAKKQYQRYSKTGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTILR 129 +++ S +++ + ++ + + + E +++R Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEER-------QQASVIR 331 Query: 130 APFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG-------D 180 AP + + GV L+ +V L + +K I + VG + Sbjct: 332 APVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVE 391 Query: 181 TYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + Y+ G K+ I D+ Sbjct: 392 AFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 892 bits (2306), Expect = 0.0 Identities = 284/1038 (27%), Positives = 517/1038 (49%), Gaps = 41/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFRAKIFVQLKPLKERKKERKLGQFELMSALRKELRS 631 + + E FT + G QN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 LPEAKGLDTINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGFVI-PFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVHNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPA 811 ++ R+ ED+ +L V + +++ A + RYN S+ + + A Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 -GISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIAIATAFVLIYMILAAL 870 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 871 YESILEPFIIMITMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 930 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 931 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 989 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 990 MISMVLSLLIVPVFYRLL 1007 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 271 bits (695), Expect = 1e-75 Identities = 101/394 (25%), Positives = 179/394 (45%), Gaps = 14/394 (3%) Query: 2798 NAVNWLNALFVAKGGNPLFAPYYLQDTPTKHIVTLMEDVNSALGMLSKPNLKNNSTDVLQ 2857 + L L + + +A + T I + + L ++ K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2858 LNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2917 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2918 LWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITSSKS 2972 +WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2973 DNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSYQYNTWTTNARVNY 3032 +N + G+Y+R F + E F G++++ ++ ALL +NQSY Y ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3033 GYDFMFKNKSVIIKPQISLRCYYIGMTGLEGVMNNALYNQFKANADPSKKSVLTIDFAFE 3092 GYDF F ++++KP + + ++G T + + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3093 NRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGGEVR 3152 R+Y+ SYFY G+ ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3153 LFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3186 L K + N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 5e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGKELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 27.8 bits (61), Expect = 0.033 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDRELSAQNEVVL 111 G+L+ I VE LS I + D L+ P++ E++ ALD+EL A+ + L Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 173
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.5 bits (68), Expect = 0.017 Identities = 17/77 (22%), Positives = 34/77 (44%) Query: 210 QVVFKKIKRKLNHFIGNILARTEVYKKLTGKYDELTGKYDELTGKYDELTGKYDELTGKY 269 V +++ +L + I ++ E+ +++ ++ G+ E T Y+ K D Y Sbjct: 98 DVSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVY 157 Query: 270 DELTGKYDELTGKYKSL 286 D T K + K +SL Sbjct: 158 DAATKKLTQAQNKLQSL 174
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.026 Identities = 26/167 (15%), Positives = 65/167 (38%), Gaps = 20/167 (11%) Query: 6 DDQNFNDEEEDFAKLLEKEETLEKGTIKEGLIVSINENDGYAMVSVGGKTEGRLALSEIT 65 +D+ + E D E ++ L+ G + I G+ ++ G E +L+L++I Sbjct: 821 NDKLYGSEGADLLDGGEGDDLLKGGYGND--IYRYLSGYGHHIIDDDGGKEDKLSLADID 878 Query: 66 DEKGQLLYQKNDPIIVHVSEKGEHPSVSYKKAISQQ-------------KIQAKIEELGE 112 + +++ ++ +G S+ +K I+ + +I+ ++ G Sbjct: 879 FR--DVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGR 936 Query: 113 NYENAIIEGKIVGK---NKGGYIVESQGVEYFLSRSRSSLKNDANHI 156 ++ + + NK Y+ + + Y + L N+ + I Sbjct: 937 IITPDSLKKALEYQQRNNKASYVYGNDALAYGSQGDLNPLINEISKI 983
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 32.1 bits (73), Expect = 0.001 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 136 GVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSF 178 G P+ L ++ Q+ + LM A A+ I + Sbjct: 132 GFQPDRVLTVWQQL-RAMANVGEMTLMSHFAEAEHPDGISGAM 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 3e-12 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 181 GEVLFLDDSKTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDNLRKHLKFIIS 240 +L DD R L LS+ G+ + + + +++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----------AGDGDLVVT 53 Query: 241 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKF 299 DV MP + + L +++K +PV+ S+ +A +A E GA YL K FD + Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 300 TEEISKILD 308 I + L Sbjct: 112 IGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 4e-10 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 681 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKTPDAILVDIEMPKMDGY 740 +L DD + R ++ + L G + +N + G D ++ D+ MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG--DGDLVVTDVVMPDENAF 63 Query: 741 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 800 ++K +LP++ ++++ T ++ E G +Y+ KP+ L ++ R++ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 801 E 801 Sbjct: 122 P 122
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 423 bits (1089), Expect = e-145 Identities = 164/571 (28%), Positives = 276/571 (48%), Gaps = 61/571 (10%) Query: 10 RLTLAIALSFLFIAIYSYF---FQKPNKTTTPTTKQETANNHTATNSNAPNAFNATQAIP 66 R L IAL F+ I+ + + T TA +A + P + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA-GSAADQGVPASGQGKLISV 63 Query: 67 QENLLSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVSHLFNPKANPQNP 124 + ++L + I++ G + + K L Q L S F +A Sbjct: 64 KTDVL--------DLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLT 115 Query: 125 LKELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGALTII 182 ++ P A+ +PL +N A G NE V D T Sbjct: 116 GRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFT 162 Query: 183 KTLTFYDDLHYDLQIAFKSPNK--------IISSYVITNGYKPVADLDS-----YTFSGV 229 KT Y + + + N + P D S +TF G Sbjct: 163 KTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGA 221 Query: 230 LLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEIG 286 D+K EK + D + + S +++ + +YF T + G + +G Sbjct: 222 AYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLG 280 Query: 287 TKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFAK 335 N + I K++ N ++GP+ + A++P L ++YG + F ++ Sbjct: 281 --NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQ 338 Query: 336 GVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAPKMKELQEKYK 395 +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ + PK++ ++E+ Sbjct: 339 PLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLG 398 Query: 396 GEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHDL 455 + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHDL Sbjct: 399 DDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDL 458 Query: 456 SIMDPYFILPLLMGASMYWHQSVTPSSVTDPMQAKLFKFLPLLFTIFLITFPAGLVLYWT 515 S DPY+ILP+LMG +M++ Q ++P++VTDPMQ K+ F+P++FT+F + FP+GLVLY+ Sbjct: 459 SAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYI 518 Query: 516 TNNILSVLQQLIINKVLENKKRTHAQSKKES 546 +N+++++QQ +I + LE K+ H++ KK+S Sbjct: 519 VSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.015 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 62 EAQEESVKETNTKETHQSAEEKKQKLEIETPQKE--IITPKPPKKNLKEE 109 ++ + + T TKET +E+K K+E E Q+ + + PK+ E Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 33.3 bits (76), Expect = 0.002 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 76.6 bits (188), Expect = 9e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.013 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.9 bits (80), Expect = 3e-04 Identities = 29/183 (15%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFATIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.5 bits (71), Expect = 0.004 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 106 NVELLKKLSPNLVVTFVG-NPKAVEHAKQFGIPILSFQERSIKEAMESIETQAKA----L 160 N+ELL ++ P+ +V G P A+ +F + AM A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL--KNVKNKKGVEFFDKPN-KVSGHKALDTDLLEKGGVD 217 + A LA+ ++ + +K R + + D + V G +L ++L++ G+ Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N 218 N Sbjct: 208 N 208
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.030 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217