>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 39.0 bits (91), Expect = 2e-05 Identities = 53/303 (17%), Positives = 97/303 (32%), Gaps = 73/303 (24%) Query: 1 MHILLTGGTGLMGRRLCARWRQAGHRLTVF---------SRRPQQVESLCGVGVRGI--- 48 M L+TG G +G + R +AGH++ S + ++E L G + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 49 ----DRFDE-YGDQPLDAVVNLAGEPIADKPWSHKRKALLWESRVRLTERLVEWLDAREQ 103 + + + + V +S + +S + ++E R Sbjct: 61 LADREGMTDLFASGHFERVFISPHR--LAVRYSLENPHAYADSNLTGFLNILE--GCRHN 116 Query: 104 RPDLLLSGSAVGWYGDSGERPVTEEGA--------AAGEDFASELCLAWEQIAREAEKLG 155 + LL S+ YG + + P + + + AA + + + + G Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHL------YG 170 Query: 156 TRVVLLRTGLVLAPEG-------GFL-----GRLLPLYRLGLGGPLGDGRQWMPWIHIED 203 LR V P G F G+ + +Y G+ + +I+D Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVY--------NYGKMKRDFTYIDD 222 Query: 204 QIELIDFLLRRP---------DASGPYNACAP---------NPVRNRDFAKALGRALHKP 245 E I L + P + AP +PV D+ +AL AL Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 246 ARI 248 A+ Sbjct: 283 AKK 285
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 1e-06 Identities = 60/303 (19%), Positives = 92/303 (30%), Gaps = 33/303 (10%) Query: 61 FALFYTLCGIPLGRMADNRSRRGLILFGVLVWSAMTAACGLARSYWQFLTFRVGVGVGEA 120 +AL C LG ++D RR ++L + + A A W R+ G+ Sbjct: 52 YALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TG 110 Query: 121 ALSPAAYSLIADSFPRERRATAISVYSMGIYLGSGLAFLLGGLVIKFASAQGDVHLPLFG 180 A A + IAD + RA S G +LGGL+ H P Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-----GGFSPHAP--- 162 Query: 181 EVRPWQLIFLILGA-AGVLFCLLLLAIREP--ARRGVGAGVAVPLGEVGAYLRANRKTVL 237 F A G+ F + E R A+ + R Sbjct: 163 --------FFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAA 214 Query: 238 CHNFGFACLSFAGYGSGAWVPTFFVRTHGWDAGHVGVVYGSIVAVFGCLGIVFGGRLADY 297 F + WV F WDA +G+ +A FG L + + Sbjct: 215 LMAVFFIMQLVGQVPAALWV-IFGEDRFHWDATTIGIS----LAAFGILHSLAQAMITGP 269 Query: 298 WAKRGRSDANMRVGLLAAWAVIPFTLVYPLLDNANWAAALMAPTVFFLSMPFGVAPAAIQ 357 A R + +G++A W MA + L G+ A+Q Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFA----TRGW----MAFPIMVLLASGGIGMPALQ 321 Query: 358 EIM 360 ++ Sbjct: 322 AML 324
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 402 bits (1035), Expect = e-130 Identities = 129/800 (16%), Positives = 248/800 (31%), Gaps = 85/800 (10%) Query: 49 YYLELVING--RDSGQVVPVNAADGHYL---LDAAALREAGVRLPGNPAGQVAVD----- 98 Y +++ +N + V + L A L G+ + D Sbjct: 78 YRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVP 137 Query: 99 ---ALPEVRADYDSASQQLHLQVPPDWLPEQRFDDPGLVARA-PARSSLGALFNYDLYYS 154 + + A D Q+L+L +P ++ + G + L NY+ + Sbjct: 138 LTSMIHDATAQLDVGQQRLNLTIPQAFMSNR---ARGYIPPELWDPGINAGLLNYNFSGN 194 Query: 155 DPAD-GATPWLSALLEQRLFDGFGV--ISNTGVYTRYFGDADNLDSRYLRYDTYWLYNDE 211 + A L + G + + ++ D+ + ++ WL D Sbjct: 195 SVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDI 254 Query: 212 RNMHS-YQLGDYVNGALNWTTPVRMGGFRFARNFGVRPDLVTYPLLRFDGQAAVPSTVDL 270 + S LGD + + G + A + + PD G A + V + Sbjct: 255 IPLRSRLTLGDGYTQGDIFDG-INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTI 313 Query: 271 FINGYKASSADLQPGPFAISNVPYINGAGEATVVTTDAQGRQVVTSLPFYVSNTLLARGL 330 NGY ++ + PGPF I+++ +G+ V +A G + ++P+ L G Sbjct: 314 KQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGH 373 Query: 331 SDFDLSVGRLRDDYGLRNFSYADNAASGIYRYGVSDRLTLSTHAEAASDLRLLGIGGDIA 390 + + ++ G R + +G+ T+ + A R G Sbjct: 374 TRYSITAGEYRSGNAQQ---EKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKN 430 Query: 391 VATFGTLSLAASGSYGQGDSGQQY---------------------LLGYSYYSRR-LGLS 428 + G LS+ + + Q+ L+GY Y + + Sbjct: 431 MGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFA 490 Query: 429 LQHIERSAGYGDLGTLDGEYQLSRRTD------------QATASLTFDEQGTIGTGYFDI 476 R GY + TD Q T + T+ Sbjct: 491 DTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQ 550 Query: 477 RARDGS-RTRLANLSYSRPIGSRS-SFYLALNKDLDGDGYSALMQLVIPFDI-------- 526 S + + + +L K+ G ++ L + Sbjct: 551 TYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDS 610 Query: 527 -----NGLLNIGVTRDSDRRYSERVIWSRSTPSQGGLGWNL------GYGGGASRYQQAD 575 + + ++ D + R + + L +++ G G + A Sbjct: 611 KSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYAT 670 Query: 576 LTWRMQNVQLQGGLYGETGNYTRWADLSGSLVWMDNAVFASNRINDAFVLVSTKGYPQVP 635 L +R G + +SG ++ N V +ND VLV G Sbjct: 671 LNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAK 730 Query: 636 IRYENQLMGSTDDNGHLLVPWVAAYYPAKFQIEPLDLPANVSAPEVEQRVAVRQGSGLLL 695 + ENQ TD G+ ++P+ Y + ++ L NV V +G+ + Sbjct: 731 V--ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRA 788 Query: 696 DFPIRAVVAASINLVDERGEPLPLGSQAEETGSGQRASVGWDGQVYFEGLQSDNQLRVV- 754 +F R + + L +PLP G+ S V +GQVY G+ +++V Sbjct: 789 EFKARVGIKLLMTLTHN-NKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKW 847 Query: 755 -RPDGRACQARFRLDTRKPT 773 + C A ++L Sbjct: 848 GEEENAHCVANYQLPPESQQ 867
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 181 bits (461), Expect = 3e-62 Identities = 88/137 (64%), Positives = 111/137 (81%), Gaps = 1/137 (0%) Query: 1 MGLLSEFKAFAVKGNVVDMAVGIIIGAAFGKIVSSFVGDVIMPPIGLLIGGVDFSDLAIT 60 M ++ EF+ FA++GNVVD+AVG+IIGAAFGKIVSS V D+IMPP+GLLIGG+DF A+T Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT 60 Query: 61 LKAAEGDVPAVVLAYGKFIQTVLDFVIVAFAIFMGVKAINRLKREEAVAPSEPPVPSAEE 120 L+ A+GD+PAVV+ YG FIQ V DF+IVAFAIFM +K IN+L R++ P+ P P+ EE Sbjct: 61 LRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKE-EPAAAPAPTKEE 119 Query: 121 TLLTEIRDLLKAQQNKS 137 LLTEIRDLLK Q N+S Sbjct: 120 VLLTEIRDLLKEQNNRS 136
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 33.4 bits (76), Expect = 2e-04 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 5/54 (9%) Query: 8 GEESRVTLHFALKLEDGNVVDSTFDK--QPASFKVGDGNLLPGFEQALFGLKAG 59 G+ VT+ + L DG V DST +K +PA+F+V ++PG+ +AL + AG Sbjct: 142 GKSDTVTVEYTGTLIDGTVFDST-EKAGKPATFQV--SQVIPGWTEALQLMPAG 192
>PF06704#DspF/AvrF protein Length = 129 Score = 27.5 bits (61), Expect = 0.032 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Query: 194 KNDIC--YATQNRQDAVKELADQCDMVL 219 +N +C Y +Q+ + AV E+ D +MV+ Sbjct: 26 QNGVCALYDSQDNEAAVIEMPDHSEMVI 53
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.8 bits (98), Expect = 1e-07 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query: 4 RQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAA 52 +Q+GFTLLE++VV+ +IG+L + +P N + + + Q +SD A Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVP---NLMGNKEKADKQKAVSDIVA 51
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 30.0 bits (67), Expect = 0.005 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 11/88 (12%) Query: 5 WILGLTGGIGSGKSAAAEHFISLGVHLVDADHAARW--VVEPGRPALAKIVERFGDGILL 62 +I G GIG A A S G H+ D+ V A A+ E F Sbjct: 12 FITGAAQGIGE---AVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF------ 62 Query: 63 PDGQLDRAALRERIFQAPEERRWLEQLL 90 P D AA+ E + E ++ L+ Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILV 90
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 352 bits (906), Expect = e-125 Identities = 164/283 (57%), Positives = 194/283 (68%), Gaps = 1/283 (0%) Query: 3 LLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPE-PKQA 61 LL+ P + L L++GSFLNVV+HRLP M+ER W+AE R + E + Sbjct: 4 LLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEP 63 Query: 62 TYNLVLPNSACPRCGHEIRPWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGY 121 YNL++P S CP C H I ENIPL+S+L L G+C C+A I RYPLVEL TALLS Sbjct: 64 PYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVA 123 Query: 122 VAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDD 181 VA W A LLLTW L+A++ ID D LLPD L LPLLW GL+ N G F SL D Sbjct: 124 VAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGD 183 Query: 182 ALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA 241 A+ G + GYL LWS++W FKL+TGKEGMGYGDFKLLA LGAW GWQ LP+ +LLSSLVGA Sbjct: 184 AVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243 Query: 242 ILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYL 284 +G+ ++ LRN PIPFGPYLAIAGWIALLWGD ITR YL Sbjct: 244 FMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 456 bits (1174), Expect = e-162 Identities = 127/406 (31%), Positives = 226/406 (55%), Gaps = 14/406 (3%) Query: 11 FVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVR-------KKGISLLGA--GK 61 + ++ D +G K +G + + + LR++G+ P+ V K G + L Sbjct: 4 YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63 Query: 62 KIKPMDIALFTRQMSTMMAAGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANS 121 ++ D+AL TRQ++T++AA +PL ++ D +++ + P++ +L+ ++ +V G+SLA++ Sbjct: 64 RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123 Query: 122 LRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKTEALKAKIKKAMTYPIAVIVVA 181 ++ P F+ LYC +V AGE SG L+ +L+R+A Y E+ + ++++I++AM YP + VVA Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183 Query: 182 IIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEW--WLLVLLMMGGAGFLL 239 I V +ILL VVP+ F LP T++++ +S+ ++ + W+L+ L+ G F + Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243 Query: 240 NHAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGA 299 R EK R + R +L LP++G I ARYARTLS A+ VPL++A+ Sbjct: 244 ---MLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 300 TGNVVFRDAVGKIKQDVSTGMQLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGF 359 N R + V G+ L+ ++ T +FP M M A GE SG LD ML + A Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 360 YEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQLGNVV 405 ++E + + L EP+++ + +V +++A+ PI QL ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 54.5 bits (131), Expect = 3e-12 Identities = 21/54 (38%), Positives = 35/54 (64%) Query: 1 MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAE 54 Q+GFTL+E+M+V+ IIG+LA++ +P + +AVS+I AL+ A + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALD 57
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.013 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 4/141 (2%) Query: 75 QVEDGQRVEPNQMLFQLKGP-ARALLTGERSALNFLQLLSGTATRSQHYADLVAGTAVKL 133 V++G+ V +L +L A A +S+L +L TR Q + + + Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARL---EQTRYQILSRSIELNKLPE 167 Query: 134 LDTRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLIKENHIAACGGIDRAIAQARRIAPG 193 L ++++ + + + ++ +R AR Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227 Query: 194 KPVEVEVENLDELRQALEAGA 214 VE LD+ L A Sbjct: 228 NLSRVEKSRLDDFSSLLHKQA 248
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 32.0 bits (73), Expect = 0.006 Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 114 SEYFSQYFNPWMTLGLVLYSLVAILLWRRLRPVYLPRFSALPVAVLLIVATIGYPFYKQL 173 +EY S N G + L+A++ L + +LI+ +G KQ+ Sbjct: 364 AEYLSYVLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQI 423 Query: 174 VSQ 176 SQ Sbjct: 424 ESQ 426
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.8 bits (67), Expect = 0.012 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 40 CGFHAGDPLTMRRAVELAVR----HGVSIG------AHPAYPDLSGFGRRSLAC-SAEEV 88 CG AGD + + + L + SI + +L F +++L +AEEV Sbjct: 503 CGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEELKPFAQKALMLDTAEEV 562 Query: 89 HAMV 92 +V Sbjct: 563 EQLV 566
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 29.1 bits (65), Expect = 0.016 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 17/106 (16%) Query: 102 NLKFNRQHIVAALDASLERLQTDWLDLYQLHWPERRTNFFGQLGYQHQ--EESFTPLEET 159 N K N+ + +L+ L + L++ HW + +FF L H+ EE + ET Sbjct: 5 NAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFF-TL---HEKFEELYDHAAET 60 Query: 160 LEVLDEQVRAGKIRHIGLSNETPWGTMT-FLRLA--EERGWPRAVS 202 ++ + E++ A IG P T+ + A + G + S Sbjct: 61 VDTIAERLLA-----IGGQ---PVATVKEYTEHASITDGGNETSAS 98
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.9 bits (70), Expect = 0.010 Identities = 14/53 (26%), Positives = 18/53 (33%) Query: 9 LFVCLLQSLALVLLLVGARHGWLPLYLALPLGVALLWLPWLLPGNRTAVATVG 61 L LL + + L + LP L LPL L L A +G Sbjct: 135 LAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIG 187
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.2 bits (107), Expect = 1e-06 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 22/234 (9%) Query: 628 DQEQVRAEQSLERLRQTLVGLREGYSSQRERLSQSRQEQQELTGQLAALDR-QLDQWTLP 686 + E VR L +L G + L Q+R EQ +++ +L + LP Sbjct: 114 EGESVRKGDVLLKLTAL--GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Query: 687 EELRLLQPSAQLEWLAQRLDDLAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQR 746 +E S + L ++ Q Q Q + L + Sbjct: 172 DEPYFQNVSEEEVLRLTSLIK------------EQFSTWQNQKYQKELNLDK----KRAE 215 Query: 747 QQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADPLRTFQALGESIEQRRQQQA 806 + + + RYE+L + + LL + + L E++ + R ++ Sbjct: 216 RLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV--LEQENKYVEAVNELRVYKS 273 Query: 807 RLQQIEQRLQELKQRCDESSWQLKQS-DEQRNEARQAEERVQAELAELNGRLGA 859 +L+QIE + K+ + K ++ + + ELA+ R A Sbjct: 274 QLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQA 327 Score = 37.1 bits (86), Expect = 4e-04 Identities = 24/178 (13%), Positives = 59/178 (33%), Gaps = 13/178 (7%) Query: 878 AQAAQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNL 937 Q ++E + P L +E + E + + +++F Q ++ Q L Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQN-----QKYQKEL 207 Query: 938 DDSRLDALLGLSEEQATQWREQLQRLQEEITRQQTLEAER---QAQLLQHRRQRPETDRE 994 + + A + ++ + + + +L ++ + +L+ + E E Sbjct: 208 NLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE 267 Query: 995 -----ALEDNLRQQRERLAASEQAYLDTYSQLQADNQRREQSQALLAELERARAEFRR 1047 + + + + Q + D R+ L LE A+ E R+ Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Score = 36.3 bits (84), Expect = 7e-04 Identities = 24/164 (14%), Positives = 63/164 (38%), Gaps = 11/164 (6%) Query: 881 AQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDS 940 A++ Q+ L R EQ R R + ++ L+ + + + + Sbjct: 132 AEADTLKTQSSLLQARLEQTRYQILS------RSIELNKLPELKLPDEPYFQNVSEEEVL 185 Query: 941 RLDALLGLSEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNL 1000 RL +L+ +EQ + W+ Q + + + +++ A++ ++ ++ L+D Sbjct: 186 RLTSLI---KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS-RVEKSRLDD-F 240 Query: 1001 RQQRERLAASEQAYLDTYSQLQADNQRREQSQALLAELERARAE 1044 + A ++ A L+ ++ ++ L ++E Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Score = 33.3 bits (76), Expect = 0.007 Identities = 28/214 (13%), Positives = 58/214 (27%), Gaps = 10/214 (4%) Query: 253 QALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEARQAWDALATERETLQWLERLAPVRGLI 312 L +L E L Q +L + R + + E L L+ Sbjct: 122 DVLLKLTALG---AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 313 ERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARLQEARERQAQADNHLRQAQAPLR 372 +++ + ++Q Q+ L +A R N + Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARI----NRYENLSRVEK 234 Query: 373 EAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQL-DMEQQRHVAEQAQLQAALR 431 +L+ + L + + + Q N+ ++ +EQ A+ + L Sbjct: 235 S--RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLV 292 Query: 432 DSQALAALGDAWVTHQGQLATLVQRRQRALESQA 465 + D + L + E Q Sbjct: 293 TQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 30.8 bits (69), Expect = 0.022 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 14/122 (11%) Query: 527 VLALGMLSALRRSFDLIHALRGGKRLSIASIPSEDPATYEMISRADTIGVFQIESRAQMA 586 V + G+ +A R + R G +++ S P+ P T ++ + S+A Sbjct: 115 VNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRT--------SMAAYA-SSKAAAV 165 Query: 587 MLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLRRRNGEEPVAYPSAELEKVFERTLGV 646 M + + + I+ IV PG + DM NG E V S E K G+ Sbjct: 166 MFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFK-----TGI 220 Query: 647 PL 648 PL Sbjct: 221 PL 222
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.2 bits (73), Expect = 6e-04 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 12 RRQAGFTLIEVMVAIMLMAIV-SLMAWRGLDSIARASAHLEDSTEQGAALLRALNQLERD 70 +Q GFTL+E+MV I+++ ++ SL+ + + +A S AL AL+ + D Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVS--DIVALENALDMYKLD 62
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 49.2 bits (117), Expect = 3e-10 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 7/129 (5%) Query: 5 RQGGFTLIELMVVLVIVGIATAAISLSARPDPTGLLRQDAARLARLLEIAQGEARVRGTP 64 RQ GFTL+E+M++L+++G++ + L+ Q AR L Q G Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 65 ILWQPSAKGYRFSPQAYRGKTDALAADTELRARDWQAAPLRVSVRPPRPVLLDAEWIGAP 124 ++F R D AD W PLR V G Sbjct: 62 FGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWL--PLR-----AGRVATSGSIAGGK 114 Query: 125 LRITLSDGQ 133 L + + G+ Sbjct: 115 LNLAFAQGE 123
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 31.0 bits (70), Expect = 6e-04 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 8 RGFTLIEVLVALAIVAIALAAAIRAVGLMTDGNGLLRDKSLA-LLAAESRLAELRLGVGA 66 RGFTL+E++V IV I + A++ LM + + K+++ ++A E+ L +L Sbjct: 8 RGFTLLEIMV--VIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHH 65 Query: 67 AP 68 P Sbjct: 66 YP 67
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 167 bits (425), Expect = 1e-56 Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 6/142 (4%) Query: 11 KGHRGQRGFTLIEIMVVVVILGILAAMVVPKVLDRPDQARATAARQDISGLMQALKLYRL 70 + QRGFTL+EIMVV+VI+G+LA++VVP ++ ++A A DI L AL +Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 71 DQGRYPSQAQGLKVLAERP-ADASASNWRS--YLERLPNDPWGKPYQYLNPGVNGEIDVF 127 D YP+ QGL+ L E P A+N+ Y++RLP DPWG Y +NPG +G D+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 128 SLGADGQPGGEGINADIGSWQL 149 S G DG+ G E DI +W L Sbjct: 122 SAGPDGEMGTED---DITNWGL 140
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.045 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 14/47 (29%) Query: 6 VAIDLSQLPPPHAVEQLDYEQILAERKAYAISLWPEDQQAEIAARLA 52 +A+ LS L P A ++ +S P + Q +A R+A Sbjct: 140 IALILSYLDPQKA--------------SFILSSLPTEVQTNVARRIA 172
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 32.5 bits (74), Expect = 0.001 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 21/133 (15%) Query: 127 DSPASLGTEALSFSAKNGTLASRKTNPDTLFSAAEEGTLEFEEYEEKPSVGAALFTKVKE 186 S + F ++ + S + AEE T F E K Sbjct: 22 ASSQIVNQTLGQFRGESVQIVSGTLQS--IADMAEEVTFVFSE------------RKELS 67 Query: 187 LLKGKEARTQAEFGQVGEAVEAIAEHSRDLGEQLGEQKKQTQQLASQL-DKVTKELADLK 245 L K K + +QA V E V +L EQK+ +L S L + L+ LK Sbjct: 68 LDKRKLSDSQARVSDVEEQVNQYLSKVPEL-----EQKQNVSELLSLLSNSPNISLSQLK 122 Query: 246 STLDS-TRDHSQQ 257 + L+ + + S+Q Sbjct: 123 AYLEGKSEEPSEQ 135
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.026 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%) Query: 239 AKGPGNFRNLFVYAPNGKKEGIQLIPVSEVA-AKDEFGSIKNISRDDQLAGLRVY 292 P + L+V + NG +++P S + +GS + R + L + + Sbjct: 779 RMLPEDVDKLYVRSANG-----EMVPFSAFTTSHWVYGS-PRLERYNGLPSMEIQ 827
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 7/155 (4%) Query: 5 LAANPTQRYRWVILLIATFAQACACFFVQGIGAI-----AVFIQNDLQLSSLQIGLLVSA 59 A NP +RW + A F +Q +G + +F ++ + IG+ ++A Sbjct: 195 EALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAA 254 Query: 60 AQLVPIVG-LLVAGELLDRYSERLVVGLGTLIVALALCASLWATDYLTILLFLVVVGAGY 118 ++ + ++ G + R ER + LG + +AT +V++ +G Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG- 313 Query: 119 STAQPGGSKSVSRWFAKTQLGFAMGIRQAGLPLGG 153 P +SR + + G G A L Sbjct: 314 GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTS 348
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 7e-06 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 19 QAKQATKQKQKQQRLEHKNQVDKDDSQRQAAEQAKAEKLARDQ--ELNRQQQEKAEKKAK 76 + +KQ+ K ++ + R+ A++AK+ A Q E+ + E E + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 77 AAQIKQLIEGTRLPKLESD 95 + +E K+E++ Sbjct: 1099 ETKETATVEKEEKAKVETE 1117
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 157 bits (398), Expect = 3e-52 Identities = 50/145 (34%), Positives = 72/145 (49%) Query: 11 DRAAIAEGLSRLLADTYTLYLKTHNFHWNVTGPMFNTLHLMFEGQYTELAVAVDDIAERI 70 ++ + L+ L++ + LY K H FHW V GP F TLH FE Y A VD IAER+ Sbjct: 9 NQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERL 68 Query: 71 RALGFPAPGTYAAYARLSSIKEEEGVPEAEEMIRQLVQGQEAVVRTARSIFPLLDKVSDE 130 A+G T Y +SI + A EM++ LV + + ++ + L ++ D Sbjct: 69 LAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDN 128 Query: 131 PTADLLTQRMQVHEKTAWMLRSLLA 155 TADL ++ EK WML S L Sbjct: 129 ATADLFVGLIEEVEKQVWMLSSYLG 153
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.6 bits (71), Expect = 0.009 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 23/117 (19%) Query: 212 YYQIAKCFRDEDLRADRQPEFTQIDIETSFLDESDIIGITEKMVRQLFKEVL-------D 264 YY+I K + + D+ + +++ S D+SD ++ + Q FKE L D Sbjct: 170 YYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSD---SSDLLFSQKFKEKLELNNKSID 226 Query: 265 VEF-----DEFPHMPFEEAMRRYGSDKPDLRIPLEL-----VDVADQLKEVEFKVFS 311 + F EF H F A Y + PD R LEL + ++L++ F+ S Sbjct: 227 INFIKENLTEFQHA-FSLAFSYYFA--PDHRTVLELYAPDMFEYMNKLEKGGFEKIS 280
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.1 bits (65), Expect = 0.017 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 13/72 (18%) Query: 12 WSLISNASIVVQLVMLTLVAASVTSWIMIFQRGNAMRAAKKALDAFEERFWS-----GID 66 +S+I + +V+ +M L A TS MR + + A ER + Sbjct: 356 FSIII-ITFIVRGIMYPLTKAQYTSM-------AKMRMLQPKIQAMRERLGDDKQRISQE 407 Query: 67 LSKLYRQAGSNP 78 + LY+ NP Sbjct: 408 MMALYKAEKVNP 419
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 49.3 bits (117), Expect = 1e-08 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 21/204 (10%) Query: 54 QLKSKSQATTQTNQKIAGEAKKTASKQYE-----VEQLEQKKLEQQKLEQQKLEQQQVAA 108 Q + TT N + + + +++ + E +Q + Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESK 1049 Query: 109 AKAAEQKKADEARKAEAQKAAEAKKADEAKKAAEAKAAEQKKQADIAKKRAEDEAKKKAA 168 ++ A E + A EAK +A + ++A ++ E K+ Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKA----------NTQTNEVA--QSGSETKETQT 1097 Query: 169 EDAKKKAAEDAKKKAAEEAKKKAAAEAAKKKAAVEAAKKKAAAAAAAARKAAEDKKAQAL 228 + K+ A + ++KA E +K E K + V ++++ A A E+ + Sbjct: 1098 TETKETATVEKEEKAKVETEKT--QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 229 AELLS--DTTERQQALADEVGSEV 250 E S +TT + A E S V Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNV 1179
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 116 bits (291), Expect = 6e-34 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%) Query: 68 YFEYDSSDLKPEAMRALDVHA---KDLKGSGQRVVLEGHTDERGTREYNMALGERRAKAV 124 F ++ + LKPE ALD +L VV+ G+TD G+ YN L ERRA++V Sbjct: 222 LFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSV 281 Query: 125 QRYLVLQGVSPAQLELVSYGKERPVATGHDEQS---------WAQNRRVELK 167 YL+ +G+ ++ G+ PV + A +RRVE++ Sbjct: 282 VDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.002 Identities = 10/53 (18%), Positives = 19/53 (35%) Query: 69 QLQQMQDELARLRGTLEEQQNQIQQLKQESLERYQDLDRRISGGGAPAAQNSA 121 + + +EL + LE+ +++I K+E Q I N Sbjct: 260 KYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 26.0 bits (57), Expect = 0.018 Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 8 LTQETLAYLEDQLSNNDVAGDDELIDLFIEEL 39 +E L YL L+N + A + + I+ +EL Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKEL 437
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.4 bits (63), Expect = 0.015 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 13/68 (19%) Query: 104 EVPAIQQPTVAPAAPPKSPQKPKP-------------LSPAATGDDAPFGMDPPAPAEQA 150 +P + PK KPKP + P + +PF PA + Sbjct: 77 PIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSS 136 Query: 151 ASLDTDAD 158 + + Sbjct: 137 TATAATSK 144
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 37.2 bits (86), Expect = 3e-05 Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 2 RSKRSSGFISIELMIALVVIAIATAGGISVLMSYLDGLDEQHAAQQQQQVAKAAEKYLKD 61 + + GF +E+M+ +V+I + + + LM + D+Q A + A + Y D Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 62 NF 63 N Sbjct: 63 NH 64
>PilS_PF08805#PilS N terminal Length = 185 Score = 117 bits (295), Expect = 7e-36 Identities = 46/179 (25%), Positives = 91/179 (50%), Gaps = 12/179 (6%) Query: 2 STTQRTSRPTQGGFVSIEMIIVLIIIAIGVGLGLAAAAGMFSSSNANEEQRNISVIAANA 61 S + R + G +E+++V+ +I + + + S+ ++ EQ N+ + AN Sbjct: 15 SLSARRKKEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLTVIANM 74 Query: 62 RALKTSSGYGSSGTNLIPSLIAINGVPKNM--SVSSGVVYNVYGGSVTV--SSTGMGFSI 117 ++LK Y + +N I +L A +P +M + N +GGSVT+ SS F++ Sbjct: 75 KSLKFQGRY--TDSNYIKTLYAQGLLPSDMIADTTGASAKNPWGGSVTITTSSDKYSFNV 132 Query: 118 TTSKLPQDACITLATKIAKNTFEQTKINSGSAITGEVTTAAATQACSSDSNSITWTYSS 176 + +PQ C+ + + +++ +KIN+ S +T +A C+SDSN++T++ S Sbjct: 133 VEANVPQKNCMAMVNAL-RSSSAISKINNTS-----TSTVSAATVCASDSNTLTFSTDS 185
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 71.8 bits (176), Expect = 5e-16 Identities = 74/346 (21%), Positives = 141/346 (40%), Gaps = 20/346 (5%) Query: 14 SKQFGRKERLQFYESMSTLLENGVPLKDAVAEVHKIFAHEGQHPFHPVAIASREALMGLS 73 + + ++TL+ +PL++A+ V K E H + A R +M Sbjct: 62 KIRLSTSDLALLTRQLATLVAASMPLEEALDAVAK--QSEKPH-LSQLMAAVRSKVME-- 116 Query: 74 NGKRLATAMALYLPVQE---RALIEAGEMSGNLVQAMGDAVSLVEAQARIRATIWQALLY 130 G LA AM + E A++ AGE SG+L + E + ++R+ I QA++Y Sbjct: 117 -GHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIY 175 Query: 131 PSALSAMMVFLLCIVAYRMVPSLARLSDPVTWTGPLAT--LNAIASFVTGPGIYVLVAVI 188 P L+ + + ++ I+ +VP + + PL+T L ++ V G ++L+A++ Sbjct: 176 PCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALL 235 Query: 189 TLTVVVIVTLPTYRWKGRVWLDRTLPPW----SIYRMLQGTTFLLNMAVMLNAGIRPYDS 244 + V L + RV R L I R L + ++++ + + + Sbjct: 236 AGFMAFRVMLRQEKR--RVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQA 293 Query: 245 LASMIK-ISPPWLKQRLEAARYGVGLGQNLGVALRSAGHDFPDRQAIQYLCILANRGGFS 303 + +S + + RL A V G +L AL FP + G Sbjct: 294 MRISGDVMSNDYARHRLSLATDAVREGVSLHKALE-QTALFP-PMMRHMIASGERSGELD 351 Query: 304 EALVKFSRRWQETSLKQIELAAGLVKNFALIFIGALMILVLLGAYQ 349 L + + Q+ LA GL + ++ + A+++ ++L Q Sbjct: 352 SMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQ 397
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 87.3 bits (216), Expect = 4e-20 Identities = 70/318 (22%), Positives = 132/318 (41%), Gaps = 26/318 (8%) Query: 269 SELKTSILSDIENSINSMLTPSMGRMSLSRATGTLTVTDRPEVLNRVQQLVNRENESITK 328 + + +++ S+ + + + T L VT P+V+N +++++ + + Sbjct: 287 TGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIA-QLDIRRP 345 Query: 329 QVLLNVNVLSVALTDKDQLGIDW---NLVYKSLNNKWGIGLKNTMPGIDQSAISGSV--- 382 QVL+ + V D LGI W N N G+ + + G +Q G+V Sbjct: 346 QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNS-GLPISTAIAGANQYNKDGTVSSS 404 Query: 383 --SILDTANSAWAGS-----KAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435 S L + N AG ++ AL+ + + +PS+ TL+ A +G+ L Sbjct: 405 LASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVL 464 Query: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495 SQ ++ + +T T G + + P + E +LL+I ++S TS Sbjct: 465 TGSQTTSGDNIFNTVERK----TVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSS 520 Query: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFG-LGGGLT 551 D A F + + V + SGET+V+ G ++ +KV GD G L + Sbjct: 521 DLGATFNTRTVN---NAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTS 577 Query: 552 RNTKREVIVVLITPVVLG 569 + + +++ I P V+ Sbjct: 578 KKVSKRNLMLFIRPTVIR 595
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.7 bits (69), Expect = 0.007 Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 4/128 (3%) Query: 166 QLPPAPRP-KPVQQLYAKPAAPTPAAVAQPSSTEKVSTLESPVVVASVPTPTPITTSPAP 224 Q+ P P +P+ PA P QP V P + P P+ Sbjct: 39 QVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 98 Query: 225 TKKPESTTVFPPAAPAKDGHPSSPPAASAPIKPLASAVKSMPPTPAVASAPPVKVLTPAE 284 K P + P S P P + + P + +A V + A Sbjct: 99 PKPKPKP---KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVAS 155 Query: 285 PSRQLAQS 292 R L+++ Sbjct: 156 GPRALSRN 163
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.013 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 11/223 (4%) Query: 221 DPAAEFGIRTLPDLPHSTPSSDAELSEISGKQCALPLSSD--AEPRQNPPSTPLVRMPNS 278 +P E +T+ +TP++ I ++P +++ A + P P P+ Sbjct: 982 NPEVEKRNQTVDTTNITTPNN------IQADVPSVPSNNEEIARVDEAPVPPPAPATPSE 1035 Query: 279 YSTYTYKQDSVCKKPVQPQTREEAHPNWQGLLHTLEAEQRIQAVSALRRVSEDLRLPIIE 338 + + K V+ ++ Q EA+ ++A + V++ Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 339 QWQHRCAGGTVGNPFGYLMTLIQRAVQGKFNASWAPEEPAERTIPAAERPSRAPAPSSPI 398 Q TV + + K + +P++ T+ P+R P+ I Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 399 APTQPQVQPRGDTRTGSEVLSRLKDLIRPRHGSSVPSERGDEP 441 Q Q DT ++ S + S G+ Sbjct: 1156 KEPQSQTNTTADTEQPAKETSS---NVEQPVTESTTVNTGNSV 1195
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 25.6 bits (56), Expect = 0.028 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 18 RDQLKQKAAHNHRSANSEIVYRLERSNELEEELARANRMVDELFAKNQRLQAELAAANTP 77 D+LK K++ + + I ++ L L + +L EL AN Sbjct: 294 SDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCED------KDIFKLYGELLTANIY 347 Query: 78 QV 79 + Sbjct: 348 AL 349
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 791 bits (2045), Expect = 0.0 Identities = 282/863 (32%), Positives = 443/863 (51%), Gaps = 47/863 (5%) Query: 12 LSVYSRSSCLMALGLALPAVTFAVEFNAEFLNNEGGAPVELKYFENGNSVSPGTYSVDIH 71 + R A P + + FN FL ++ A +L FENG + PGTY VDI+ Sbjct: 24 AGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIY 83 Query: 72 LNQIMIRREDVVFSADPDTGSVRPVVRVGLLKEIGVDIARLTRDKLIPDNLENNTPLNVA 131 LN + DV F+ + P + L +G++ A ++ L+ D+ + + Sbjct: 84 LNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADD----ACVPLT 139 Query: 132 ELIPGASIEFDVNSLSLLVSIPQLYVQRHSRGYVDPSLWDDGVTALFSNYQANFTRNTN- 190 +I A+ + DV L ++IPQ ++ +RGY+ P LWD G+ A NY + N Sbjct: 140 SMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNR 199 Query: 191 FGQNSDYRYLGLRNGFNLFGWRLRNDSSLS-----GGTGMRNKFSSNRTYVERDIRALKG 245 G NS Y YL L++G N+ WRLR++++ S +G +NK+ T++ERDI L+ Sbjct: 200 IGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRS 259 Query: 246 TLSLGELYTSAQGDAFESVRMRGVQLQSDIGMLPDNEISYTPVVRGIAETNATVEVSQNG 305 L+LG+ YT GD F+ + RG QL SD MLPD++ + PV+ GIA A V + QNG Sbjct: 260 RLTLGDGYTQ--GDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNG 317 Query: 306 FVIYSTNVPPGAFEITDIYPSGSNGDLEVKIIEADGRQRSFKQSYSYLPVMTRKGNLRYG 365 + IY++ VPPG F I DIY +G++GDL+V I EADG + F YS +P++ R+G+ RY Sbjct: 318 YDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYS 377 Query: 366 LAAGEYHNDG--QPSVNLLQGSAVYGLSDRVTGFGGLLAAEKYNATNLGLGFNT-PLGGF 422 + AGEY + Q Q + ++GL T +GG A++Y A N G+G N LG Sbjct: 378 ITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGAL 437 Query: 423 SADVTHSQSRTRRGGRNQGQSLRLLYSKTINATETSFTVVGYRYSTEGYRTLSQH----- 477 S D+T + S ++ GQS+R LY+K++N + T+ +VGYRYST GY + Sbjct: 438 SVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRM 497 Query: 478 ----------IDDMSEESYLYGSSSSRQKSRIDLTVNQTLFRRSSLYLTAGETTYWNRPG 527 + + + Y + + ++ ++ LTV Q L R S+LYL+ TYW Sbjct: 498 NGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSN 557 Query: 528 SSRRVQFGFSSGIKRASYSLAVSRTQETGSFGRSDTQFTASVSIPLGG--------SARS 579 + Q G ++ + +++L+ S T+ GR D +V+IP R Sbjct: 558 VDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGR-DQMLALNVNIPFSHWLRSDSKSQWRH 616 Query: 580 SQVYANAVSSQHGDSSLNTGISGYLDEANAFNYSAQANYSKDG----GNSGSVGLGWDTS 635 + + +G + G+ G L E N +YS Q Y+ G G++G L + Sbjct: 617 ASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGG 676 Query: 636 KAKLSANYSQGRDNKQINLGASGSVVVHSGGVTFGQPVGETFGLVEVPEVGGVGLDGYSS 695 + YS D KQ+ G SG V+ H+ GVT GQP+ +T LV+ P ++ + Sbjct: 677 YGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTG 736 Query: 696 VRTDGRGYAVLPYMQPYRYNWVNLDTNTLGSDTEISDSTQMAVPTRGAVIAKRFSAESGR 755 VRTD RGYAVLPY YR N V LDTNTL + ++ ++ VPTRGA++ F A G Sbjct: 737 VRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGI 796 Query: 756 RVQFDLSMDSGGKIPFGAQAYDKEERVVGMVDNLSRLLVFGIEDQGRLSIRWSDG---SC 812 ++ L+ + +PFGA + + G+V + ++ + G+ G++ ++W + C Sbjct: 797 KLLMTLTHN-NKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHC 855 Query: 813 SVDYQLPPRNKDLTYERVALSCR 835 +YQLPP ++ +++ CR Sbjct: 856 VANYQLPPESQQQLLTQLSAECR 878
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.016 Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 315 AHDGHAQACAQALGIHRNSLRYRLERI 341 A G+ A LG++RN+LR ++ + Sbjct: 447 ATRGNQIKAADLLGLNRNTLRKKIREL 473
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 29.7 bits (66), Expect = 0.026 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Query: 23 LHPFLALLAAAL---IAGFAYQVPTAEIVKTVTGGFGSILGYIGIVIVLGTIIGVILERS 79 L P + L+ A+ + G TAE+ ++ G + + + +++V+ + Sbjct: 378 LKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVV------GK 431 Query: 80 GAAITMAESVIRLLGERFPTLTMSIIGYLVS-IPVFCDSGFVILNSLKNALAARMKISTI 138 GAA + ++ +++GE L +++ L G + S + ++M + T Sbjct: 432 GAAAKLGNALSKMMGETIKKLVPNVLKQLAQNGSKLFTQGMQRITSGLGNVGSKMGLQTN 491 Query: 139 AMS 141 A+S Sbjct: 492 ALS 494
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 2e-06 Identities = 76/334 (22%), Positives = 120/334 (35%), Gaps = 35/334 (10%) Query: 68 LAAYAVGQF----MWGVFADRFGTRVVVLGGLLTSALAALVMGTLATLPIFAACMVVQGL 123 LA YA+ QF + G +DRFG R V+L L +A+ +M T L + +V G+ Sbjct: 49 LALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI 108 Query: 124 AQSTGWSGLCKNIGAFFA----TYERGRVLGLWSTCYAFGGLVATPFAGWCAYRLTHDWR 179 +TG GA+ A ER R G S C+ F G+VA P G + Sbjct: 109 TGATG-----AVAGAYIADITDGDERARHFGFMSACFGF-GMVAGPVLGGLMGGFSP--H 160 Query: 180 MAFLSSAGVVLAVAVLFFFLQRNRPQDVGLPPVEAEAARPANAPRPSH-SGALLKALRNP 238 F ++A + + FL LP RP + + Sbjct: 161 APFFAAAALNGLNFLTGCFL---------LPESHKGERRPLRREALNPLASFRWARGMTV 211 Query: 239 HVLVLGLAYFLLKPARYAILLWGPVIIYERMPEIGKVASAIVPSAFEVAGLAGPILIGLA 298 ++ + + + + LW VI E I +AF + +I Sbjct: 212 VAALMAVFFIMQLVGQVPAALW--VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 299 SDKLFGARRMPACVLSLAALTVSLALFVPAMQSGSLYLVVGLLFMMGVTLYGPDSMISGA 358 G RR A +L + A L A + + ++ LL G+ + +M+S Sbjct: 270 VAARLGERR--ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQ 327 Query: 359 AAIDFGTSEAAGTATGFVNGCGSVGAILGGLLPG 392 E G G + S+ +I+G LL Sbjct: 328 VD-----EERQGQLQGSLAALTSLTSIVGPLLFT 356
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 31.6 bits (71), Expect = 0.009 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 458 FVGYHGTFLEAAQSIVFGGVRARSQ---DLDAIWRGFYVAGDPALAYGYAQDQEPDARGR 514 F YHGT SI G + +S + D W+GFY + A GY+ D E G+ Sbjct: 49 FSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDNENPLSGK 108 Query: 515 IRNGALLRVYVP 526 G +++V P Sbjct: 109 A--GGVVKVTYP 118
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 719 bits (1856), Expect = 0.0 Identities = 459/488 (94%), Positives = 468/488 (95%) Query: 2 ARPIADLIHFNSTTVTASGDVYYGPGGGTGIGPIARPIEHGLDSSTENGWQEFESYADLG 61 ARPIADLIHFNSTTVTASGDVYYGPGGGTGIGPIARPIEHGLDSSTENGWQEFESYAD+G Sbjct: 1 ARPIADLIHFNSTTVTASGDVYYGPGGGTGIGPIARPIEHGLDSSTENGWQEFESYADVG 60 Query: 62 VDPRRYVPLQVKEKRREIELQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSL 121 VDPRRYVPLQVKEKRREIELQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSL Sbjct: 61 VDPRRYVPLQVKEKRREIELQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSL 120 Query: 122 TIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDRE 181 TIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDRE Sbjct: 121 TIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDRE 180 Query: 182 MEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQ 241 MEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQ Sbjct: 181 MEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQ 240 Query: 242 QAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLVSAPSVMA 301 QAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVL SAPSVMA Sbjct: 241 QAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMA 300 Query: 302 VGFASLTYSSRTAEQWQDQTPDSVRYALGMDANKLGLPSSVNLNAVAKAGGTVDLPMRLT 361 VGFASLTYSSRTAEQWQDQTPDSVRYALGMDA KLGLP SVNLNAVAKA GTVDLPMRLT Sbjct: 301 VGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRLT 360 Query: 362 NEARGSTTTLSVVSTDGVSVPKAVPVRMAAYNTATGLYEVTVPSTVAEAPPLILTWTPAS 421 NEARG+TTTLSVVSTDGVSVPKAVPVRMAAYN TGLYEVTVPST AEAPPLILTWTPAS Sbjct: 361 NEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPAS 420 Query: 422 PPGNQNPSSTTPVVSKPVPVYEGAALTPLKTDPESYPGMLLDLNDLIVIFPADSGVKPVY 481 PPGNQNPSSTTPVV KPVPVYEGA LTP+K PE+YPG++ DLI+ FPADSG+KP+Y Sbjct: 421 PPGNQNPSSTTPVVPKPVPVYEGATLTPVKATPETYPGVITLPEDLIIGFPADSGIKPIY 480 Query: 482 VMLSSPLD 489 VM P D Sbjct: 481 VMFRDPRD 488
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 3e-19 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 3/148 (2%) Query: 7 RILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLMLPGEDGLS 66 IL+ +DD + + + L G V I +N A I A DLVV D+++P E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 ICRQVR-PQFDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125 + +++ + D P+L+++A+ M + E GA DY+ KP L+ I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 126 PEAGAPAADSKRLAFGRLVIDNAMREAW 153 + + + AM+E + Sbjct: 125 RPSKLEDD--SQDGMPLVGRSAAMQEIY 150
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 8e-06 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 25/107 (23%) Query: 431 LQNLLTNALRHA------DRRVRISYRVSLERCRVDVEDDGPGVPEAQWERLFTPFLRLD 484 +Q L+ N ++H ++ + ++VE+ G + E Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309 Query: 485 DSRTRASGGHGLGLSIVR-RIVYWHGGRASIGRSETLGGACFTLAWP 530 G GL VR R+ +G A I SE G + P Sbjct: 310 --------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.5 bits (128), Expect = 5e-11 Identities = 24/144 (16%), Positives = 58/144 (40%), Gaps = 8/144 (5%) Query: 12 RRRLSRDERQRQLLEVAWRLVREEGTEALTLGRLAEQAGVTKPVVYDHFGTRAGLLAALY 71 + + E ++ +L+VA RL ++G + +LG +A+ AGVT+ +Y HF ++ L + ++ Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 72 QDYDLRQTALMEAALEASEATLEGRADVIARAYVDCVMQQGREIPGVVAALASSPE---- 127 + + L I ++ ++ + E Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLES-TVTEERRRLLMEIIFHKCEFVGE 122 Query: 128 ---LERIKRDYEVLFMDKCRAVLE 148 +++ +R+ + D+ L+ Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLK 146
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 65.6 bits (160), Expect = 4e-14 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%) Query: 79 RSYRLAVRQREAELEQARETLRQRDEQWRRRMQLAGAVSREEVANAGRALRIARARAEAA 138 R Y+ + Q E+E+ A+E + + ++ + LR Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL--------------DKLRQTTDNIGLL 314 Query: 139 GAALDQARLDLRRSELRSPVDGYVTQLRVQ-PGDYAAAGRTNIFIV-DRRSFWVTGYFEE 196 L + + S +R+PV V QL+V G T + IV + + VT + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 197 TKLRNVQVGAPATIKLMGFD----PLLDGHVASIGRGVADLNESRADSGLPQVSPNFSWI 252 + + VG A IK+ F L G V +I D+ Q Sbjct: 375 KDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN----------LDAIEDQRLGLV--- 421 Query: 253 RLAQRVPVRIELDRVPA---GVVLAAGMTGSVEV 283 V + IE + + + L++GM + E+ Sbjct: 422 ---FNVIISIEENCLSTGNKNIPLSSGMAVTAEI 452 Score = 47.5 bits (113), Expect = 3e-08 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 3/114 (2%) Query: 41 VSAQVIRIAPEVSGSVEAVFVADNQRVARGDPLYRIDPRSYRLAVRQREAELEQARETLR 100 S + I P + V+ + V + + V +GD L ++ + ++ L QAR + Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE-Q 150 Query: 101 QRDEQWRRRMQLAGAVSREEVANAGRALRIARARAEAAGAALDQARLDLRRSEL 154 R + R ++L E + +L + + +++ Sbjct: 151 TRYQILSRSIELNKL--PELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQK 202
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 5e-04 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 6/103 (5%) Query: 87 RHDLPQDCRVVDVPPLLRQLIVAAMRIAPDYPPGGRDERVMELILDELRVLPILALHVPQ 146 R + + R + + + ++ + D L + + + Sbjct: 376 REIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAE 435 Query: 147 PVDPRLAALCRSLRAEPAADWSLGDAARRLGVSPRTLTRAFQR 189 P + L A A + AA LG++ TL + + Sbjct: 436 MEYPLI------LAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 109 bits (273), Expect = 7e-28 Identities = 79/402 (19%), Positives = 168/402 (41%), Gaps = 17/402 (4%) Query: 23 FMAGMNVHVTSAALPEIEGALGATFEEGSWISTAYLVAEISMIPLTAWLVEVFSLRRVML 82 F + +N V + +LP+I +W++TA+++ + L + ++R++L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 83 LGSLVFLLSSLSCALAPN-LSTLILIRVIQGASGAVLIPLSMQLILTELPSSRIPLGMAL 141 G ++ S+ + + S LI+ R IQGA A L M ++ +P L Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 142 FSLSNSVAQAAGPSIGGWLADAYSWRWIFLLQLLPGIALLAAVAWSIRPRDGDRERLRQA 201 ++ + GP+IGG +A W ++ L+ ++ I + + + R + Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKL---LKKEVRIK-GHF 199 Query: 202 DWLGIGAMVAGLGALQIVLEEGGRRDWFESGFIRTFAVLAVLALLLFVQRQLWGARPFIN 261 D GI M G+ + F + + +F +++VL+ L+FV+ PF++ Sbjct: 200 DIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 262 LRLLGSYNFGVSSLAMAVFGAATFGLVFLVPNYLSQLQGFNARQIGDSLILYGLVQLLL- 320 L + F + L + G V +VP + + + +IG +I G + +++ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 321 APLLPRLMRWLNPKLLVAGGFAIMALGCWMGAHLNADAGRNVIIPSIVVRGIGQPLIMVA 380 + L+ P ++ G +++ ++ A + + IV G Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 381 LSVLAVKGLDKAQAGSASALISMLRNLGGAIGTALLTQLVSL 422 +S + L + +AG+ +L++ L G A++ L+S+ Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 121 bits (304), Expect = 1e-32 Identities = 61/368 (16%), Positives = 110/368 (29%), Gaps = 68/368 (18%) Query: 66 AVSAQVSGYVAEVLVADDADVQAGDLLLRLDPRDFR-------QRLRAAEAREAAAQAAL 118 + + V E++V + V+ GD+LL+L L A + Q Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 119 EAQ-------------------------------RAKLETLDRQLLEQAQTISRARADGE 147 + + + T Q ++ + + RA+ Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 148 AARAEWRRAETDWR-------RYRQLADEHATSRQRLENADAVHQRARAAARRASAEEGR 200 A R E R + L + A ++ + + + A R ++ + Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQ 277 Query: 201 QRAARDVLKSR--------RREAEAALAQRQAELQEAAAARELARHALDDTEIRAPFAGR 252 + K + E L Q + + IRAP + + Sbjct: 278 IESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVK 337 Query: 253 VGQRKVRLR-QYVTPGLPLLAVVPLEQAYVV-ANYKETQLERIRPGQPVELEVDTFGRRW 310 V Q KV VT L+ +VP + V A + + I GQ ++V+ F Sbjct: 338 VQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTR 397 Query: 311 RGRVDSVAPASGAVFALLPPDNATGNFTKIVQRFPVRIRLDADAAERG----RLLPGMSV 366 G + + D +V F V I ++ + G L GM+V Sbjct: 398 YGYLV-------GKVKNINLDAIEDQRLGLV--FNVIISIEENCLSTGNKNIPLSSGMAV 448 Query: 367 IATVDTRE 374 A + T Sbjct: 449 TAEIKTGM 456
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 129 bits (325), Expect = 5e-42 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 9/118 (7%) Query: 12 CLLCGFFSTGI-SMASSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGG 70 F S G +MASS ++ S + +AGQ ++ +C +E A A L G Sbjct: 11 VWQVLFVSAGAQAMASSFVVPSTAQMAGQLGIEATG-SGVC---AGPAEQANA----LAG 62 Query: 71 DTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRR 128 D AC +WL +P +W PTP GI L+ G + L RQ EG+Y + G + L+R Sbjct: 63 DVACAEQWLGDKPVSWSPTPDGIWLMNAEGTGITHLNRQKEGEYTGRTPSGADVTLQR 120
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 109 bits (273), Expect = 6e-28 Identities = 80/418 (19%), Positives = 161/418 (38%), Gaps = 30/418 (7%) Query: 15 LCILLAGQLLPMIDFSIVNVALDALAHSLGASETELELIVAVYGVAFAVCLAMGGRLGDN 74 LCIL +++ ++NV+L +A+ + + + F++ A+ G+L D Sbjct: 19 LCIL---SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 75 YGRRRLFDLGVALFAVASLLCGLAGS-VWLLLVARALQGVGAALVVPQIFATLHVSLSGH 133 G +RL G+ + S++ + S LL++AR +QG GAA + + + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 134 AHSRALAAYGAIGGLAFVVGQVLGGFLVSADIGGLGWRSVFLINLPICLGILLCSRRWVP 193 +A G+I + VG +GG + + W +L+ +P+ I + + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHY----IHWS--YLLLIPMITIITVPFLMKLL 189 Query: 194 ETRAEHAARVDAPGTLLLAALILCLLLPLALGPSLHWS-WPCALLLAAAVPLLAWLWRTE 252 + D G +L++ I+ +L + L+ Sbjct: 190 KKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF------------- 236 Query: 253 LRQERRQAWPLLPPSLLRLPSIRFGLLLAILFFACWSGFMFALALALQAGAGLSPVQAGN 312 ++ R+ P + P L + G+L + F +GF+ + ++ LS + G+ Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGS 296 Query: 313 AFIALGA-SYFVSALLTARVAARIGPVRLLLLGCVIQMCGLLGLMLTLQRVWPQPGILNL 371 I G S + + + R GP+ +L +G L + + Sbjct: 297 VIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL-----LETTSWFM 351 Query: 372 APATLVIGFGQAFIVSSFFRIGLSEVPAAQAGAGSAMLATVQQASLGLGSALLGAVFA 429 + + G +F + I S + +AGAG ++L S G G A++G + + Sbjct: 352 TIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.4 bits (66), Expect = 0.021 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 5 VIVVG-AGIVGSACAHELARRGLDVLVLDS 33 +V G AG +G + L G V+ +D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDN 32
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 197 bits (502), Expect = 1e-59 Identities = 91/398 (22%), Positives = 176/398 (44%), Gaps = 14/398 (3%) Query: 18 FLIIIDMTVLYTALPRLTHDLGATAAEKLWIVNAYPLVVAGLLPGAGLLSDRLGHKRLFL 77 F +++ VL +LP + +D A W+ A+ L + G LSD+LG KRL L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 78 AGLPLFGLASLCAAFAPSAAA-LIAARAGLAVGAALMMPATLSIVRHVFQDERERALAIG 136 G+ + S+ S + LI AR GAA PA + +V + + R A G Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAA-AFPALVMVVVARYIPKENRGKAFG 142 Query: 137 IWASVASAGAALGPVVGGVLLEFFWWGSVFLINVPVVVVALLLALPAIPACGGQSRRPWD 196 + S+ + G +GP +GG++ + W +L+ +P++ + + L + + + +D Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFD 200 Query: 197 ALGSLQMMFGLVGVVYAIKELSTRAPDFGLAVLAALGGMLCLYLFVRRQRRAREPMIDFA 256 G + M G+V + L T + +++ +L +FV+ R+ +P +D Sbjct: 201 IKGIILMSVGIVFFM-----LFTTSYSISFLIVS----VLSFLIFVKHIRKVTDPFVDPG 251 Query: 257 LFRNRRFARGVAVALVATMALVGMELVFSQHLQLVQGLTPLKAG-LFVLPIPLASLVVGP 315 L +N F GV + + G + ++ V L+ + G + + P ++ ++ G Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 316 LAGWLVPRWGENRVMCASLLLGSAGLLGLALSYQSATGAQLASLVLLGVGFGGAMTAAST 375 + G LV R G V+ + S L + ++ + +V + G T ST Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 376 AVMLNVDEQSSGMAAAIEDVSYELGGVIGVTLLGSLMS 413 V ++ +Q +G ++ + + L G+ ++G L+S Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 5e-12 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 7/150 (4%) Query: 1 MGRRRTIDRDQLLDAAEAVIAREGAAGLTIDAVAKEMGITKGGVQYCFGTKDALIDAIFE 60 + R +LD A + +++G + ++ +AK G+T+G + + F K L I+E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 RWGKAYDSLFEAVAGKQP-TPLTRVRAHAEATQRSDELSSSKAAALMAALIQAPEHLEGS 119 L K P PL+ +R S + + + E Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE-- 122 Query: 120 NQWYRSRLEGLDLSAPEGRRARLAFLAVEG 149 + ++ + R+ Sbjct: 123 ----MAVVQQAQRNLCLESYDRIEQTLKHC 148
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.9 bits (106), Expect = 4e-07 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 53 LVWGLAQPFTGALADRYGAARAVLVGGLLYALGLVLMGLSQSATGLSLSAGLLIGLGLSG 112 L + + G L+D+ G R +L G ++ G V+ + S L + A + G G + Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AA 118 Query: 113 TSFSVILGAVGRAVPAEQRSMAMGISSAAGSFGQFAMLPGTLGLIG-WLGWSSALLALGL 171 ++++ V R +P E R A G+ + + G+ + P G+I ++ WS LL + Sbjct: 119 AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGE-GVGPAIGGMIAHYIHWSYLLLIPMI 177 Query: 172 LVALIVPLAGLMK 184 + + L L+K Sbjct: 178 TIITVPFLMKLLK 190
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.0 bits (184), Expect = 5e-19 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 10/202 (4%) Query: 5 SRQQENAEATREALLESALSAFIEHGYGGVSIDAIAREARVTKGAFYHHFGSKQELLAEC 64 + ++ A+ TR+ +L+ AL F + G S+ IA+ A VT+GA Y HF K +L +E Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 65 YERQVRTIAEDLDRVPAHVDKWAEAAALA--EAFIDSVMARGKRQL----SLQEVITVVG 118 +E I E A + ++S + +R+L + V Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 119 WE---RWKRIDSRHTLRYVGRLVDELAASGELK-DYRRETLVGQLYGFLTQAAMSLRDAR 174 + +R + + + + + L D + G+++ + A Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 175 SKRQAANEVKAIIRDFLYSLRR 196 E + + L Sbjct: 183 QSFDLKKEARDYVAILLEMYLL 204
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.7 bits (66), Expect = 0.002 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Query: 22 AAPLPDELPAALPAAPPVAPLPMGSAPQPQPEAAEPDLPGSDAASADGEATTK 74 A PLP+ PA PA P G+ P P+P +PDL DG+ T+ Sbjct: 325 AQPLPEVSPAENPANNPAPNENPGTRPNPEP---DPDLNPDANPDTDGQPGTR 374
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 9e-06 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 93 VAVAWQGKGVGSRLLGELLDIADNWMNLRRVELTVYTDNAPALALYRKFGF 143 VA ++ KGVG+ LL + ++ A + + L N A Y K F Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKE-NHFCGLMLETQDINISACHFYAKHHF 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (277), Expect = 3e-31 Identities = 61/185 (32%), Positives = 86/185 (46%), Gaps = 3/185 (1%) Query: 5 KTLLITGASSGFGQALAREALDAGHRVVGTVRSEEARSALEAVAPGQAFGR---LLDVTD 61 K ITGA+ G G+A+AR G + + E + + +A DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 62 LAAIEPTVAAIERDIGPLDVLVNSAGYGHEGILEESPLAEMRRQFEVNLFGAVAMIQAVL 121 AAI+ A IER++GP+D+LVN AG G++ E F VN G ++V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 122 PYMRRRRRGHILNITSMGGYITMPGIAYYCGSKFALEGVSEALGKEVAGLGIAVTAVAPG 181 YM RR G I+ + S + +A Y SK A ++ LG E+A I V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 182 SFRTD 186 S TD Sbjct: 189 STETD 193
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.8 bits (119), Expect = 2e-08 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 9/124 (7%) Query: 416 LTGLRVCLVEDDRNVLRATSALLERWGCTVQ-AETEADGWRTDC----DILVVDYDLGPH 470 +TG + + +DD + + L R G V+ A WR D++V D + P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVM-PD 59 Query: 471 ASGVECIERVRRQRGEAIPALVISGH-DIERIQASVEDTDIALLSKPVRPTELRATL-RA 528 + + + R+++ +P LV+S + E L KP TEL + RA Sbjct: 60 ENAFDLLPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 529 LRER 532 L E Sbjct: 119 LAEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 2e-11 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 5/157 (3%) Query: 3 GRIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLAGEGEQPDSLILDLRFPGL 62 I+VADD R + L R + + A + R G D ++ D+ P Sbjct: 4 ATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE 60 Query: 63 TRIEMLADLRRQFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELGQAILAIRA 122 ++L +++ P ++V+S + + GA +L K EL I RA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG--RA 118 Query: 123 GEVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQ 159 R Q L G + ++ R+LA+ Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 30.1 bits (67), Expect = 0.040 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 523 RISRDSRSLVENDRFEQVNMNSSSLIKGDELHTTQGERHTRIGGNELLSISGAGSIAVDG 582 +I+ SL+ Q+ N S LI G T G R T I G + + ++G + G Sbjct: 1080 QIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAG 1139 Query: 583 TWVVQ-AGSQARVTA-TNVLVDAGVNLTLKAG 612 Q AG ++++ A N + AG L AG Sbjct: 1140 ADSTQTAGDRSKLLAGNNSYLTAGDRSKLTAG 1171
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.9 bits (75), Expect = 0.008 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 24/161 (14%) Query: 432 RNLLLHPAVQANRVDTRFVESHLETLLAPIPASHPRLRAECPLAEDAAPARVEAPLGSLP 491 R L P + + F+ +HLE + P+ PRL A + A + + LG + Sbjct: 26 RKQLDTPVREK--DENEFLPAHLELIETPVSR-RPRLVAYFIMGF-LVIAFILSVLGQVE 81 Query: 492 LPAPSSGVLVALEVSVGERVRAGQRVAILEAMKMEFEVKAPGGGIVRRLAASLGEPLEEG 551 + A ++G L +G+ E+K IV+ + GE + +G Sbjct: 82 IVATANGKLTH----------SGRSK----------EIKPIENSIVKEIIVKEGESVRKG 121 Query: 552 ATLLFLEPTEDDDEQAPTEQALDLAHIRADLAEVLERQAAL 592 LL L + + T+ +L A + ++L R L Sbjct: 122 DVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.5 bits (141), Expect = 9e-13 Identities = 24/149 (16%), Positives = 55/149 (36%) Query: 14 QPQQARSSELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRL 73 + + + E IL+ A+++ + +G + +A+ AGV+ G++Y +F +K+ + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 74 QSDEWRRTTRLLGEILEDTTRPPLARLRRLVLAFVRSECEEAAIRVALSDAAPLYRDADE 133 L E PL+ LR +++ + S E R+ + E Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 134 AREVKAEGARVFQAFLREALPEVAEAERS 162 V+ + + + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEA 151
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.0 bits (91), Expect = 6e-05 Identities = 25/201 (12%), Positives = 63/201 (31%), Gaps = 13/201 (6%) Query: 3 RASLHMLLCQFAMALGLLLSLGSEAWAARPAPQAAVDLEAPAALAEDASLDQLNAQLDLI 62 A A + + + L ++ S +++ LI Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYF-QNVSEEEVLRLTSLI 191 Query: 63 RQRVTADASDDLLAELRQSALQVQRQ-ADALLALRVADIERLDDQLKVIGPPQPDEAESL 121 +++ + + EL + +R A + +L + SL Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD--------DFSSL 243 Query: 122 AAQRQALTRQKNALLDDERQATQLGQSSRDLAAQIVNLRRSLFNSQISSRAATPFSPSFW 181 ++ K+A+L+ E + + R +Q+ + + +++ + T + Sbjct: 244 LHKQAI---AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300 Query: 182 STLIRPTDDDLRRLDKLKAEA 202 +R T D++ L A+ Sbjct: 301 LDKLRQTTDNIGLLTLELAKN 321
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 259 bits (664), Expect = 2e-87 Identities = 98/326 (30%), Positives = 167/326 (51%), Gaps = 13/326 (3%) Query: 5 DLLSQDEIDALLHGVDDGLVETEVEATPG-----SVKSYDLTSQDRIVRGRMPTLEMINE 59 ++LSQDEID LL + G + +E + YD D+ + +M TL +++E Sbjct: 3 EVLSQDEIDQLLTAISSG--DASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHE 60 Query: 60 RFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILD 119 FAR T S+ LR V V V + + E++ S+ P++L ++ M PL+G A+ +D Sbjct: 61 TFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVD 120 Query: 120 AKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMNFEYV 179 + F ++D FGG G+ AK++ R+ T E V+ V+ + +++E+W V+++ Sbjct: 121 PSITFSIIDRLFGGTGQAAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLG 179 Query: 180 NSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIREMLDAGF--QSDH 237 E NP A IV PSE+VV+ T ++ G ++ +PY IEPI L + F S Sbjct: 180 QIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVR 239 Query: 238 DDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVE---MPEHMVMRA 294 +++ LR+ + V + + A V +L +RDIL ++ GD+I + + + V+ Sbjct: 240 RSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSI 299 Query: 295 NGVPAFKVKLGAHKGNLALQILEAVE 320 F + G +A QILE +E Sbjct: 300 GNRKKFLCQPGVVGKKIAAQILERIE 325
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 120 bits (301), Expect = 8e-38 Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 24/145 (16%) Query: 13 ALADEWAAALAE-AGDASQDDIDALMAQGGATPVAEPSTPRAPMEEFGASPKAPTISGLE 71 AL D WA AL E ++ DA+ Q G V+ Sbjct: 14 ALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQ--------------------- 52 Query: 72 GPNLDVILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGE 131 ++D+I+DIPV +++E+G T ++I+ LL+L QGSV+ LD LAGEPLD+L+NG LIA GE Sbjct: 53 --DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGE 110 Query: 132 VVVVNEKFGIRLTDVISPSERIKKL 156 VVVV +K+G+R+TD+I+PSER+++L Sbjct: 111 VVVVADKYGVRITDIITPSERMRRL 135
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 264 bits (676), Expect = 2e-91 Identities = 140/242 (57%), Positives = 176/242 (72%), Gaps = 3/242 (1%) Query: 11 LAALCLLLLAPWPALAADPTSISAITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLM 70 L+ +LL P A + IT G Q +S+ +Q L+ +T+L+FIPA +++M Sbjct: 5 LSVAPVLLWLITPLAFA---QLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMM 61 Query: 71 TSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQI 130 TSFTRIIIVF +LR ALG S P NQVL+GLALFLT F+M+PV DKI A QP+ E+I Sbjct: 62 TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKI 121 Query: 131 PAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSELKT 190 QEAL+K PL+ FML QTR +DL LF RL+ + PEA P+ IL+PA+VTSELKT Sbjct: 122 SMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKT 181 Query: 191 AFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAG 250 AFQIGF IFIPFLIIDLV++SVLMA+GMMM+ P I+LPFK+MLFVLVDGW L++G+LA Sbjct: 182 AFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQ 241 Query: 251 SF 252 SF Sbjct: 242 SF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 54.8 bits (132), Expect = 9e-14 Identities = 24/75 (32%), Positives = 43/75 (57%) Query: 7 LDLFREALWLTAMIVGVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLMVILLTLIVLG 66 + +AL+L ++ G + + ++GL+V +FQ TQ+ EQTL F +L+ + L L +L Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PWLLRQLMEYTQTLI 81 W L+ Y + +I Sbjct: 65 GWYGEVLLSYGRQVI 79
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 135 bits (341), Expect = 7e-41 Identities = 96/232 (41%), Positives = 143/232 (61%), Gaps = 2/232 (0%) Query: 1 MLELTNAQIGGWIASFVLPLFRVAALLMTMPVIGTQLVPVRVRLYLALGVCVVLVPNLPP 60 ML++T+ Q W+ + PL RV AL+ T P++ + VP RV+L LA+ + + P+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 MPQVDALSMKAMLLIGEQILVGALLGFSLQLLFHAFVIAGQIISMQMGLGFASMVDPANG 120 S A+ L +QIL+G LGF++Q F A AG+II +QMGL FA+ VDPA+ Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 VSVPVLGQFFTMLVTLLFLAMNGHLVVFEVIAESFVTLPVGEGLSGNHFWI-IAGKLGWV 179 +++PVL + ML LLFL NGHL + ++ ++F TLP+G ++ ++ + + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 180 MGAALLLALPAITALLVVNLAFGAMTRAAPQLNIFSIGFPLTLVLGLVILWI 231 L+LALP IT LL +NLA G + R APQL+IF IGFPLTL +G+ ++ Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAA 231
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.8 bits (204), Expect = 4e-21 Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 12/247 (4%) Query: 8 AIVTGASRGIGRAIARRLAADGFAVAVNYAGNQTMADEVVAEIVAAGGTAIAVQGDVASP 67 A +TGA++GIG A+AR LA+ G +A N ++VV+ + A A A DV Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAA-VDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 68 EDMDKLFEATRGAFGRIDVVVNSAGTMPYLKIADGDLEGFDRVIRTNLRGAFIVLGLAAR 127 +D++ G ID++VN AG + I E ++ N G F ++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 128 HV--ERGGRIIALSTSVIARALPSYGPYIASKSGVEGLVHVLANELRGQDIRVNAVAPGP 185 ++ R G I+ + ++ S Y +SK+ L EL +IR N V+PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 186 VATE----LFFNGKSAEQI-----DQIARLAPLERLGEPDEIAAAVSFLAGPDGAWVNSQ 236 T+ L+ + AEQ+ + PL++L +P +IA AV FL + Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMH 249 Query: 237 VLRVNGG 243 L V+GG Sbjct: 250 NLCVDGG 256
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 8e-04 Identities = 18/46 (39%), Positives = 24/46 (52%) Query: 30 GSAYAKGGNGGGNGGGHGGGHGGGKGGSHGGNLGGHSSKGHGSATS 75 S G G G+G GGG G G GG +G + GG + G+ SA + Sbjct: 40 SSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85 Score = 29.3 bits (65), Expect = 0.003 Identities = 13/43 (30%), Positives = 16/43 (37%) Query: 25 ELSPVGSAYAKGGNGGGNGGGHGGGHGGGKGGSHGGNLGGHSS 67 E +P G G + GG G GG G GG G + Sbjct: 42 ENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 61.3 bits (149), Expect = 2e-14 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Query: 12 AIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIP 68 AI + Y P ++ K + + IA + VPI + L R L + IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 69 EALYRTIAEIIAF 81 AE++ + Sbjct: 328 AEQIEATAEVLRW 340
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 71.2 bits (174), Expect = 2e-17 Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 16/166 (9%) Query: 5 RERNKRLILRAASEEFADKGFAATKTSDIAARAGLPKPNVYYYFQSKENLYRCVLESIVE 64 + ++ IL A F+ +G ++T +IA AG+ + +Y++F+ K +L+ + E Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 65 PLLQASA--PFRVEDDPLLALPAYIRSKIRISRELPH----ASKVFASEIMHGAPHLPKE 118 + + + DPL L + + + +F G Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE----MA 124 Query: 119 YLDELNAQAQRNVTCLQTW-----IDRGQL-APVDPHHLLFAIWAA 158 + + I+ L A + + Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 24.9 bits (53), Expect = 0.048 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 9/72 (12%) Query: 22 QTDLNGKPMAGVGHQVVCP---------LCKGTFPITEGSALLDVNGVPVALHGMKTACG 72 Q N P G+ + V P KG I G+ G VA+ A G Sbjct: 38 QISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATG 97 Query: 73 ASLIASGPLGAA 84 + +A GPL A Sbjct: 98 VNSVAIGPLSKA 109
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 422 bits (1087), Expect = e-150 Identities = 232/349 (66%), Positives = 294/349 (84%) Query: 1 MSAEKTEQPTAKKLRDARRQGQVVKSKEIVSSALILSLVALLMGFSDYYLEHLGKLLLLP 60 MS EKTEQPT KK+RDAR++GQV KSKE+VS+ALI++L A+LMG SDYY EH KL+L+P Sbjct: 1 MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIP 60 Query: 61 AEYIDLPFRQALETILENLLQELLYLLAPVLLVAALVVVLSHVGQYGFLLSLDSVKPDLK 120 AE LPF QAL +++N+L E YL P+L VAAL+ + SHV QYGFL+S +++KPD+K Sbjct: 61 AEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 121 KINPVEGAKKIFSIRSLVEFLKSTLKVALLSLLVWLTLQGNLASLLRIPACGLDCVAPVS 180 KINP+EGAK+IFSI+SLVEFLKS LKV LLS+L+W+ ++GNL +LL++P CG++C+ P+ Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 181 GLMLRQLMLVCAVGFLAIAVADYAFERHQHYKQLRMSKDEVKREYKEMEGSPEIKSKRRQ 240 G +LRQLM++C VGF+ I++ADYAFE +Q+ K+L+MSKDE+KREYKEMEGSPEIKSKRRQ Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ 240 Query: 241 FHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRRGETPLPLVTLKHTDALALRVRRIAE 300 FHQE+QS N+R +V+RSSV+VANPTH+AIGI Y+RGETPLPLVT K+TDA VR+IAE Sbjct: 241 FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAE 300 Query: 301 EEGIPVLQRIPLARALLRDGNVDQYIPADLIQATAEVLRWLESQQTDTP 349 EEG+P+LQRIPLARAL D VD YIPA+ I+ATAEVLRWLE Q + Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQ 349
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 142 bits (360), Expect = 1e-43 Identities = 47/245 (19%), Positives = 100/245 (40%), Gaps = 4/245 (1%) Query: 9 LLLTYSLLLPRIISCFVVLPVLAKQTLGGGLVRNGVACSLALFAYPIVAGSLPPALDALD 68 L Y L R+++ P+L+++++ V+ G+A + P + + P Sbjct: 12 WLNLYFWPLLRVLALISTAPILSERSVPK-RVKLGLAMMITFAIAPSLPANDVPVFSFFA 70 Query: 69 IALLIGKEVLLGLLIGFVATIPFWAMEATGFIIDNQRGAALASTFNPSLGSQTSPTGLLL 128 + L + +++L+G+ +GF F A+ G II Q G + A+ +P+ ++ Sbjct: 71 LWLAV-QQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 Query: 129 TQTLITLFFSGGAFLALVGSLFRSYASWPVSSFFPQLGSQWVAFFYAQFSQMLMLCALFA 188 + LF + L L+ L ++ + P+ S S + + + A Sbjct: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPL--NSNAFLALTKAGSLIFLNGLMLA 187 Query: 189 APLLIAMFLAEFGLALVSRFAPSLNVFILAMPIKSLVASLLLVLYLGILMEHAYDALLLA 248 PL+ + L L++R AP L++F++ P+ V L+ + ++ Sbjct: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247 Query: 249 VDPLR 253 + L Sbjct: 248 FNLLA 252
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 68.3 bits (167), Expect = 4e-19 Identities = 35/78 (44%), Positives = 48/78 (61%) Query: 5 DILHFTNQTLWLVLVLSLPPVLVAALIGTLVSLVQALTQIQEQTLGFVAKLVAVVVVLFA 64 D++ N+ L+LVL+LS P +VA +IG LV L Q +TQ+QEQTL F KL+ V + LF Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 TSGWLGGELYRFAEMTLL 82 SGW G L + + Sbjct: 63 LSGWYGEVLLSYGRQVIF 80
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 246 bits (629), Expect = 3e-85 Identities = 92/217 (42%), Positives = 142/217 (65%), Gaps = 7/217 (3%) Query: 6 DELGLILGLALLALVPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLY 65 +++ LI LA L+PFI T F+K ++VF ++RNALG+QQIP NM + G+A++LS++ Sbjct: 3 NDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMF 62 Query: 66 VMAPVGFATRDYLRNHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQV 125 VM P+ Y + DV+ +D +S+ + +DEG+ YR++L + FF + + Sbjct: 63 VMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKR 122 Query: 126 WPSEYAERLDPD-------SLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLA 178 E E + D S+ LLPA+ +SE+ AF+IGF +YLPF+ +DL++S++LLA Sbjct: 123 QYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLA 182 Query: 179 MGMMMVSPMTISLPFKLLLFVLLDGWARLTHGLVISY 215 +GMMM+SP+TIS P KL+LFV LDGW L+ GL++ Y Sbjct: 183 LGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 83.5 bits (206), Expect = 1e-20 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 14/177 (7%) Query: 130 RLALWLDGDPATLLARLPPRPSAQRLAIPLRLSLQWPGLPLDASELRTLEPGDLLLLPAG 189 R LW + P L A RP R + + L L + GD+LL+ Sbjct: 126 RGGLWFEHLPE-LPAVGGGRPKMLRWPLRFVIGSSDTQRSL----LGRIGIGDVLLIRTS 180 Query: 190 HRPDAALLGVLEGRPWARCQLHSTQL-ELLDMH----DTPSLADGEDLHELDQLPIPVSF 244 A + + ++ + E LD+ + + E L L+QLP+ + F Sbjct: 181 R----AEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQLPVKLEF 236 Query: 245 EVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQDRLGVRVT 301 + R+ + L L + LL L + + V I+AN LG GELV++ D LGV + Sbjct: 237 VLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTLGVEIH 293
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.9 bits (90), Expect = 3e-05 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 18/133 (13%) Query: 19 APLPPLRAQQIAFEQALPAHRPPAPRPPFDKGDETTEAAATADAPTSTPLADQPAAPAAD 78 + + P + Q + R P T + T+T + A Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDP----------TVNIKEPQSQTNTTADTEQPAKE-- 1174 Query: 79 RPPTTRQAPMPVAADATPTPTPTPTPTPTPTPTPTPTPTV-SPSGSVARQAPAVTARVAA 137 T+ PV T + P T T PTV S S + + + R Sbjct: 1175 ---TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 138 STQGREPASVSAP 150 EPA+ S+ Sbjct: 1232 HNV--EPATTSSN 1242
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 283 bits (726), Expect = 6e-98 Identities = 134/294 (45%), Positives = 181/294 (61%), Gaps = 7/294 (2%) Query: 1 MDILQSSSAAPLA-----PREAANAPAQQAGGSFQGERVHYVSVS-QSLADAAEELTFAF 54 M L + S P A++ Q G F+GE V VS + QS+AD AEE+TF F Sbjct: 1 MTTLHNLSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSGTLQSIADMAEEVTFVF 60 Query: 55 SERAEKSLAKRRLSDAHARLSEVQTMLQEYWKRIPDLESQQKLEALIAHLGSGQLSSLAQ 114 SER E SL KR+LSD+ AR+S+V+ + +Y ++P+LE +Q + L++ L + SL+Q Sbjct: 61 SERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISLSQ 120 Query: 115 LSAYLEGFSSEISQRFLALSRARDVLAGRPEARAMLALVDQALLRMADEQGLEIELGLRI 174 L AYLEG S E S++F L RD L GRPE + LV+QAL+ MA+EQG I LG RI Sbjct: 121 LKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQALVSMAEEQGETIVLGARI 180 Query: 175 EPLAAEASAAGVGDIQALRDTYRDAVLDYRGLSAAWQDIQARFAATPLERVVAFLQKALS 234 P A S +GV +Q LRDTYRDAV+ Y+G+ A W D+Q RF ++ V+ FLQKALS Sbjct: 181 TPEAYRESQSGVNPLQPLRDTYRDAVMGYQGIYAIWSDLQKRFPNGDIDSVILFLQKALS 240 Query: 235 ADLDSQSSRLDPVKLERVMSDMHKLRVLGGLAEQVGALWQVLVTGERGHGIRAF 288 ADL SQ S KL V+SD+ KL+ G +++QV WQ G + +G+R F Sbjct: 241 ADLQSQQSGSGREKLGIVISDLQKLKEFGSVSDQVKGFWQFFSEG-KTNGVRPF 293
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 344 bits (884), Expect = e-121 Identities = 115/296 (38%), Positives = 171/296 (57%), Gaps = 32/296 (10%) Query: 25 ASAEQEELLALLRSERIVLAHAGQPLSEAQVL-------------KALAWLLAANPSAPP 71 S+ EEL+ L++ + I ++ P +++V K LA+ L + Sbjct: 28 GSSVLEELVQLVKDKNIDISIKYDPRKDSEVFANRVITDDIELLKKILAYFLPEDAILKG 87 Query: 72 GQ-------GLEVLREVLQARRQPGAQWDLREFLVSAYFSLHG-RLDEDVIGVYKDVLQT 123 G G++ ++E L++ P QW+LR F+ +FSL R+D+D++ V D + Sbjct: 88 GHYDNQLQNGIKRVKEFLES--SPNTQWELRAFMAVMHFSLTADRIDDDILKVIVDSMNH 145 Query: 124 QDGKRKALLDELKALTAELKVYSVIQSQINAALSAKQGIRIDAGGIDLVDPTLYGYAVGD 183 R L +EL LTAELK+YSVIQ++IN LS+ I I I+L+D LYGY + Sbjct: 146 HGDARSKLREELAELTAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYGYT-DE 204 Query: 184 PRWKDSPEYALLSNLDTFSGKL--------SIKDFLSGSPKQSGELKGLSDEYPFEKDNN 235 +K S EY +L + + ++ SIKDFL K++G L L + Y + KDNN Sbjct: 205 EIFKASAEYKILEKMPQTTIQVDGSEKKIVSIKDFLGSENKRTGALGNLKNSYSYNKDNN 264 Query: 236 PVGNFATTVSDRSRPLNDKVNEKTTLLNDTSSRYNSAVEALNRFIQKYDSVLRDIL 291 + +FATT SD+SRPLND V++KTT L+D +SR+NSA+EALNRFIQKYDSV++ +L Sbjct: 265 ELSHFATTCSDKSRPLNDLVSQKTTQLSDITSRFNSAIEALNRFIQKYDSVMQRLL 320
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 202 bits (514), Expect = 2e-69 Identities = 95/166 (57%), Positives = 126/166 (75%) Query: 3 QQATPSDTDQQQALEAFLRDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQA 62 QQ T + Q A+E+FL+ GGT+AML +S DTLEQLY+L FNQYQ+GK++DA K+FQA Sbjct: 2 QQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQA 61 Query: 63 LCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 122 LC+LDHYD+R+FLGLGACRQ++G Y+ A+ SYSYGA+MDI EPRFPFHAAEC LQ G+L Sbjct: 62 LCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELA 121 Query: 123 GAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDRTYESDNA 168 AESG + A+ L A + + L+ R +MLEA+ +K+ +E + Sbjct: 122 EAESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEMEHECVDN 167
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 29.5 bits (66), Expect = 0.012 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 20/95 (21%) Query: 10 TDILRPELIERYEGY---------GRMFQQLFAKQPIAAEFVIYNVVEGRYPADDERFDA 60 +DILR L+ +Y G ++ + F+ + ++ Sbjct: 135 SDILRLFLLCKYGGLWIDATVYMFDKVPNYIVESN----RFMFQSS---FLESETTHISN 187 Query: 61 YLVTGSKADSFGPDPWIQTLKTFLLDRYERGDKLL 95 +L+ + DP++ LK ++ ++ +K Sbjct: 188 WLIFVKSKN----DPFLVGLKNSMVTYLKKKEKPA 218
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 28.5 bits (63), Expect = 0.015 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 9/40 (22%) Query: 122 PCVATGVGGLDWSEV-KP----LVVRHLGDLEIPVILYEV 156 PCV + G DWS V KP + V + GDL +L +V Sbjct: 315 PCVQVSIAGADWSYVCKPVEYVISVSNPGDL----VLRDV 350
>PF03895#Serum resistance protein DsrA. Length = 79 Score = 27.9 bits (62), Expect = 0.022 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Query: 413 GYRDTWSWAMGVQYDVNDRLQLRAGYEYRPSAIPKGQADILVPIGDANLYGLGLGYQW 470 GYRD + A+GV + DR +AG + G + YG +GY++ Sbjct: 35 GYRDKTALAIGVGSRITDRFTAKAGVAFNTYN------------GGMS-YGASVGYEF 79
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 317 bits (815), Expect = e-101 Identities = 113/446 (25%), Positives = 191/446 (42%), Gaps = 68/446 (15%) Query: 360 RAIGQRI-GAGPVKVINDVSEMDKVQPGDVLVSDMTDPDWEPVMK-RASAIVTNRGGRTC 417 R + +R+ G ++ + + ++ D+T D + K T+ GGRT Sbjct: 132 RDVSKRVLGHLIGVETGSLATIA--EETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTS 189 Query: 418 HAAIIARELGIPAVVGCGNATQILQDGQGVTVSCAEG---------DTGFIFEGELGFDV 468 H+AI++R L IPAVVG T+ +Q G V V EG + E F+ Sbjct: 190 HSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEK 249 Query: 469 RKNSVDAMPDLP--------FKIMMNVGNPDRAFDFAQLPNEGVGLARLEFIINRMIGVH 520 +K + P ++ N+G P EG+GL R EF+ Sbjct: 250 QKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLY------- 302 Query: 521 PKALLNFAGLPADIKESVEKRIAGYPDPVGFYVEKLVEGISTLAAAFWPKKVIVRLSDFK 580 ++ LP + E++ Y + + K V++R D Sbjct: 303 ----MDRDQLP-----TEEEQFEAYKE---------------VVQRMDGKPVVIRTLDIG 338 Query: 581 SNEYANLIGGKLYEPEEENPMLGFRGASRYISESFRDCFELECRALKKVRNEMGLTNVEI 640 ++ + L P+E NP LGFR + + +D F + RAL + N+++ Sbjct: 339 GDKELSY----LQLPKELNPFLGFRAIRLCLEK--QDIFRTQLRALLRAS---TYGNLKV 389 Query: 641 MVPFVRTLGEASQVVELLAGNGLKRGENG------LKVIMMCELPSNALLADEFLEFFDG 694 M P + TL E Q ++ K G ++V +M E+PS A+ A+ F + D Sbjct: 390 MFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDF 449 Query: 695 FSIGSNDLTQLTLGLDRDSGIVAHLFDERNPAVKKLLANAIAACNKAGKYIGICGQGPSD 754 FSIG+NDL Q T+ DR + V++L+ +PA+ +L+ I A + GK++G+CG+ D Sbjct: 450 FSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD 509 Query: 755 HPDLARWLMEQGIESVSLNPDSVLDT 780 L+ G++ S++ S+L Sbjct: 510 -EVAIPLLLGLGLDEFSMSATSILPA 534
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 25.1 bits (54), Expect = 0.030 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 9 RKALKQMANNHESAAVEVMRAVEWANDPKLAQRLLEVIEQMHQDAD 54 R A A + E A + A +A DP A++L +I+QM +D Sbjct: 255 RYAAVTTAASAEQGAQALQDA-GYATDPHYARKLTNMIQQMKSISD 299
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.039 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 31/123 (25%) Query: 315 QIRIEPRFMARAVINLL-----RNAIRHAHS------RVEIALLDQGDSCQIRVNDDGPG 363 + +I P M V +L N I+H + ++ + + + V + G Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302 Query: 364 IPADARQKIFEPFSRLDDSRDRSTGGFGLGLAIVR-RVAQWHGG-YAEALETPQGGASFR 421 + ++ G GL VR R+ +G L QG + Sbjct: 303 ALKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344 Query: 422 LTW 424 + Sbjct: 345 VLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.2 bits (190), Expect = 2e-18 Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 7 SKVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGL 66 + +L+ +DD + ++ LS+ G++VR + +VV D+++P +N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 QVCREIRRV-ANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALM---- 121 + I++ +LP+L+++AQ + I E GA DY+ KP + L+ + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 RRHAPLPASPES 133 RR + L + Sbjct: 124 RRPSKLEDDSQD 135
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 1e-15 Identities = 25/152 (16%), Positives = 55/152 (36%), Gaps = 8/152 (5%) Query: 5 RQRNLQLILDAACEVFADCGFSAARLSDVAERAGVAKANVLYYYRSKVQLYEAVLDSIVE 64 Q Q ILD A +F+ G S+ L ++A+ AGV + + ++++ K L+ + + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 65 PLLEASRPFAGDQP--PAEALRAYVDNKMRIGAERPHAARVFSCEIMRGAPRMPAPLLER 122 + E + P P LR + + + + + ++++ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 123 LDAQAERN-----AERIRQWIDEG-LLAPLDP 148 + ++ I+ L A L Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMT 160
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 592 bits (1528), Expect = 0.0 Identities = 197/591 (33%), Positives = 324/591 (54%), Gaps = 26/591 (4%) Query: 44 EQWTINMKDAEIGDFIEQVSSISGQTFVVDPRVKGRVTVVSQARLSLAEVYQLFLSVLAT 103 E+++ + K +I +FI VS +T ++DP V+G +TV S L+ + YQ FLSVL Sbjct: 28 EEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDV 87 Query: 104 HGYAVLPQGDQA-RIVPNMEARQDAAQKTVRDGPG---SLETRVVQAQQTSVAELIPMIR 159 +G+AV+ + ++V + +A+ A PG + TRVV + +L P++R Sbjct: 88 YGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLR 147 Query: 160 PLVPAHGHLAAV--PSANALIVSDRRANIERIEAIVRSLDRAGEHDYSIYDMRHAWVAEI 217 L G + V +N L+++ R A I+R+ IV +D AG+ + A A++ Sbjct: 148 QLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSWASAADV 207 Query: 218 AEV---LDRSVTPAAGKSAATVQVLADSRSNRLVLLGPPQARARLLRLAQSLDVPSSRSA 274 ++ L++ + +A + V+AD R+N +++ G P +R R++ + + LD + Sbjct: 208 VKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQATQG 267 Query: 275 NSRVIRLRHGDAKTLAATLGEIGESLHGER-GQDGRGSGKRGLLVRADESLNALVILADP 333 N++VI L++ A L L I ++ E+ + + ++++A NAL++ A P Sbjct: 268 NTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAP 327 Query: 334 EDVGLLEDIVRQLDVPRAQLLVEAAIVELSGEIGDALGVQWALRSGHVAGGAGFADSGLS 393 + + LE ++ QLD+ R Q+LVEA I E+ G LG+QWA AG F +SGL Sbjct: 328 DVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA---NKNAGMTQFTNSGLP 384 Query: 394 IGTLLGAL----QAGKPPAELP------DGAIVGLGSRDFGALVTALSRNSRSNLLSTPS 443 I T + + G + L +G G ++ L+TALS ++++++L+TPS Sbjct: 385 ISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPS 444 Query: 444 LLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRMLR 503 ++TLDN +A VGQ VP TGS TTS N F TVERK +G+ LKV P I E + Sbjct: 445 IVTLDNMEATFNVGQEVPVLTGSQTTS---GDNIFNTVERKTVGIKLKVKPQINEGDSVL 501 Query: 504 LEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSRVP 563 LEIEQE+SS+A A+ + + N R++ + VL G+ +V+GGL+ + + +VP Sbjct: 502 LEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVP 561 Query: 564 LLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAGLERISHGRYRSIQ 614 LLGDIP +G LFRS+ + KRNLM+F+RP+++RD + S G+Y + Sbjct: 562 LLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYTAFN 612
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 48.4 bits (115), Expect = 3e-07 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 8/163 (4%) Query: 2519 TDSNGNDSAAYGITLTPNGLSLNIGQI-DVNGTSGDDVLSGANGSSEHINGGDGSDLIFN 2577 D+ G D+ + ++LN G DV G G+ ++ E+ GG G+D++ Sbjct: 296 WDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTI-ENAIGGSGNDILVG 354 Query: 2578 VGTGDHVVAGNGNDTIQITATDFVSIDGGAGFDTLVLANGIDLDYNAVGVGT--LSNLER 2635 + + G GND + A ++ GGAG DT V +G D A +++ Sbjct: 355 NSADNILQGGAGNDVLYGGAGA-DTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDK 413 Query: 2636 IDLGKGDSGSVLTLTAAEVDAITDANNTLQITGENNDTLNVVG 2678 IDL + + D T + + + +++ + Sbjct: 414 IDL---SAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNLW 453
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 351 bits (901), Expect = e-125 Identities = 102/207 (49%), Positives = 136/207 (65%), Gaps = 2/207 (0%) Query: 3 GIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRA--GLVANAA 60 IP I Y +PTA +P N W +P RAVLL+HDMQ YF+ L AN Sbjct: 2 AIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIR 61 Query: 61 RLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLL 120 +L+ CV+ G+ + YTAQPGS + R LL DFWGPG+ + P + +++ ELAP DD +L Sbjct: 62 KLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVL 121 Query: 121 TKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADF 180 TKWRYSAF ++LL+ MR GRDQL++ G+YAH+G L++ +A+ DI+ F V DA+ADF Sbjct: 122 TKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADF 181 Query: 181 SEAHHRMALEYAASRCAMVVTTDEVLE 207 S H+MALEYAA RCA V TD +L+ Sbjct: 182 SLEKHQMALEYAAGRCAFTVMTDSLLD 208
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 99.1 bits (247), Expect = 5e-25 Identities = 86/335 (25%), Positives = 125/335 (37%), Gaps = 37/335 (11%) Query: 49 GAAVTVGGIAWMLAARPWGIASDRHGRRRILLGGLAGFALSYGSLCLFIVLALHWTLPTL 108 G + + + A G SDR GRR +LL LAG A+ Y + Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY----------------AI 89 Query: 109 FAFAG---IVLLRGLAGGFYAAVPACTAALVADHVEAQRRAAALAGLGAASAIGMVIGPG 165 A A ++ + + G A A A +AD + RA + A GMV GP Sbjct: 90 MATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV 149 Query: 166 LAGLLATHGLVLPLLVTGALPLVALLALWRWLP----------REERRQPNRGAALAIGD 215 L GL+ P AL + L LP R E P A G Sbjct: 150 LGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGM 209 Query: 216 RRLRRPLAVGFVAMFSVTVAQITVGFFALDRLRLDSADAARVAGIALTAVGVALILAQLL 275 + +AV F+ V F DR D+ GI+L A G+ LAQ + Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATT----IGISLAAFGILHSLAQAM 265 Query: 276 VRRL---DWPPPRLIRVGGLVAAIGFAAVCFADSPPLLWLAFFVAAAGMGWVFPAVSALN 332 + R + +G + G+ + FA + + + A+G G PA+ A+ Sbjct: 266 ITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAML 324 Query: 333 ANAVRAEEQGAAAGTLVAVHGFGLISGPLLGTLLH 367 + V E QG G+L A+ I GPLL T ++ Sbjct: 325 SRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359 Score = 37.5 bits (87), Expect = 8e-05 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 7/140 (5%) Query: 251 SADAARVAGIALTAVGVA-LILAQLLVRRLDWPPPRLIRVGGLV-AAIGFAAVCFADSPP 308 S D GI L + A +L D R + + L AA+ +A + A P Sbjct: 38 SNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATA---P 94 Query: 309 LLWLAFF--VAAAGMGWVFPAVSALNANAVRAEEQGAAAGTLVAVHGFGLISGPLLGTLL 366 LW+ + + A G A A+ +E+ G + A GFG+++GP+LG L+ Sbjct: 95 FLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM 154 Query: 367 HQLDSRAPYALVGLLLALAA 386 AP+ L L Sbjct: 155 GGFSPHAPFFAAAALNGLNF 174
>SALVRPPROT#Salmonella virulence-associated 28kDa protein signature. Length = 241 Score = 30.5 bits (68), Expect = 0.018 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%) Query: 299 RFAGERRHIEAFRDGLPRVARALAHISSLMIFDDHDITDDWNLS 342 +FAG++ HI RD +P+ +AL S ++F + D W ++ Sbjct: 99 KFAGDKFHISVLRDMVPQAFQAL----SGLLFSEDSPVDKWKVT 138
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 126 bits (319), Expect = 4e-34 Identities = 82/393 (20%), Positives = 159/393 (40%), Gaps = 21/393 (5%) Query: 14 LDATIVFVALPEISRALDFSAQRLQWVVSAYTVAFGGFLLLGGRATDLLGRRRMYVLGQS 73 L+ ++ V+LP+I+ + WV +A+ + F + G+ +D LG +R+ + G Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 74 LYALASLAGGLAQSELP-LILARAVQGLGGALLFPATLALIGNHFAEGPARNRALAIWSI 132 + S+ G + S LI+AR +QG G A FPA + ++ + R +A + Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGKAFGLIGS 146 Query: 133 ASAFGLALGSALGGALTELFGWASIFLVNVPLAGAAALLALRLIPADARRQRGRRFDLAG 192 A G +G A+GG + W+ +L+ +P+ + L + R +G FD+ G Sbjct: 147 IVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKG-HFDIKG 203 Query: 193 ALTVTAGATLLVFTLVQGPESGWDAPSVRFGLYLSVPLLLAFLAIEHYSR--DPLMPLRL 250 + ++ G + S +L V +L + ++H + DP + L Sbjct: 204 IILMSVGIVFFMLF----------TTSYSIS-FLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 251 LGNRNLQVAMLLTAIFMSSYGVQYYFLAIYFQSVYGYSVLQTGLAFL-PATLLCTLGIRV 309 N + +L I + + + V+ S + G + P T+ + + Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 310 AERLLARHGARATLVAGLLLGALGLGLLAACLPLGRGFLALLPAIVILSVGQGMTWTAMW 369 L+ R G L G+ ++ L A+ L + + IV + G T T + Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSF-LTASFLLETTSWFMTI-IIVFVLGGLSFTKTVIS 370 Query: 370 VSAASGVDPAEQGVASGMASMTQQIGGALGLAL 402 +S + E G + + T + G+A+ Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 32.2 bits (73), Expect = 0.001 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 69 FRAQALIEQFIVARPADYRLDDWARATARIYRALEPAGRGDPASAA-DRL-ARQAALYG 125 FR Q + DYR W + + GR DP S + +RL R A G Sbjct: 129 FRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHDSNGRSDPTSRSWNRLYTRLMAENG 187
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.8 bits (132), Expect = 2e-10 Identities = 84/365 (23%), Positives = 139/365 (38%), Gaps = 20/365 (5%) Query: 23 VGTVELVVAGVLDELAASFAVSQGRAGLLMSLYALVYALLGPLLVYLSAGIERRRLLAGA 82 +G + V+ G+L +L S V G+L++LYAL+ P+L LS RR +L + Sbjct: 21 IGLIMPVLPGLLRDLVHSNDV-TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVS 79 Query: 83 LLAFIGANLASAAAPSFALLLASRLLVAASASVIVVVAITLAVAIVAPERRGRAIGLVFA 142 L A AP +L R++ + + V +A I + R R G + A Sbjct: 80 LAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA-DITDGDERARHFGFMSA 138 Query: 143 GIVASLVLGVPLGTLIGEFWGWRSLFLLLAGVALLGLPLLLRLL---------PAIPGAP 193 +V G LG L+G F + F A + L LL P A Sbjct: 139 CFGFGMVAGPVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREAL 197 Query: 194 GIAPAEQLRALARGRVPFAHLASLLQMTGQFTVYTYIVPFLVGSMALDKPTISLVLLVYG 253 + + + ++Q+ GQ +++ F D TI + L +G Sbjct: 198 NPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVI-FGEDRFHWDATTIGISLAAFG 256 Query: 254 GGGILG-ALLGGRAADRWPGPATFVAFLLLHALALVLLPFATGGLPLLLGAVVFWCVFNM 312 L A++ G A R + ++ +LL FAT G V+ Sbjct: 257 ILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLL--ASGG 314 Query: 313 APGPAIQKYLVELSPDTAAIQISLNTSAIQLGVALGAFIGAILVDQVAVRALPWW-GAAL 371 PA+Q L + Q+ + +A+ +L + +G +L + ++ W G A Sbjct: 315 IGMPALQAMLSRQVDEERQGQLQGSLAALT---SLTSIVGPLLFTAIYAASITTWNGWAW 371 Query: 372 ILGAA 376 I GAA Sbjct: 372 IAGAA 376
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.6 bits (214), Expect = 2e-22 Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 9/188 (4%) Query: 2 QNILITGAASGIGAASARLFHRRGWRVGLLDIDAEALRGLAVQLPGAWHRA----VDVSE 57 + ITGAA GIG A AR +G + +D + E L + L A DV + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 58 PDAVGEALAQFCAD-GRLRLLFNCAGVLRFGRFEEVALEDHARLLAINLHGVLNCCHAAF 116 A+ E A+ + G + +L N AGVLR G ++ E+ ++N GV N + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 117 PFLRATPQAQVLNMGSASGLYGVPE--MAVYSASKFAVRGLTEALELEWRRHGIRVADLM 174 ++ ++ +GS GVP MA Y++SK A T+ L LE + IR + Sbjct: 129 KYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 175 PPFVRTPM 182 P T M Sbjct: 187 PGSTETDM 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 8e-06 Identities = 37/182 (20%), Positives = 82/182 (45%), Gaps = 6/182 (3%) Query: 29 FWSCKIGYGLDGMDTQMLSFVIPTLIALWGISTGEAGFIHTMTLLASAAGGWIAGILSDR 88 W C + + ++ +L+ +P + + +++T +L + G + G LSD+ Sbjct: 17 IWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 89 IGRVLTLQLTVLWFAFFTFLCGLAQNYEQLLV-ARTLMGFGFGGEWTAGAVLIGEVIKAR 147 +G L ++ F + + + ++ LL+ AR + G G V++ I Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 148 DRGKAVGLVQSGWAIGWGLTAILYSLMFSLLPPEQAWRALFMLGLLPALFVLVVRRLVKE 207 +RGKA GL+ S A+G G+ + ++ + W L ++ ++ + V + +L+K+ Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI----HWSYLLLIPMITIITVPFLMKLLKK 191 Query: 208 PA 209 Sbjct: 192 EV 193
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 772 bits (1995), Expect = 0.0 Identities = 271/881 (30%), Positives = 411/881 (46%), Gaps = 50/881 (5%) Query: 7 RRCRTGTALMAGGMALAASAFGHAQPGYEFDDRLLLGSSLGGGDLSRFNQDGRIDPGRYH 66 R + A AA A + F+ R L DLSRF + PG Y Sbjct: 21 HRLAGFFVRLFVACAFAAQA-PLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYR 79 Query: 67 VDVYLNERFASRSEVSFRANPASGAVEPCLDEDFLRQRLGAKPGDDPRKSGDGRHCAFLG 126 VD+YLN + + +V+F + + PCL L C L Sbjct: 80 VDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLT 139 Query: 127 ARLPGSRFSLDIARLRLDLSVPQALLDLKPRGYVSPEEWDAGDSMGFVNYDTNLYRSDYR 186 + + + LD+ + RL+L++PQA + + RGY+ PE WD G + G +NY+ + R Sbjct: 140 SMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNR 199 Query: 187 GGESGRSDYAYVGLNSGINLGLWRLRHQSNYTYSRYNGQA--RRKWNSIRTYAQRALPAW 244 G G S YAY+ L SG+N+G WRLR + ++Y+ + + + KW I T+ +R + Sbjct: 200 IG--GNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPL 257 Query: 245 RSELTAGESYTAGNLLGSIGYRGLSLATDDRMLPESLRRYAPQVRGTAATAARVVISQNG 304 RS LT G+ YT G++ I +RG LA+DD MLP+S R +AP + G A A+V I QNG Sbjct: 258 RSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNG 317 Query: 305 RKIREVNVAPGPFVIDDLYDSAYAGDLDVQVFEADGSVSSFSVPFASVPESMRPGLSRYS 364 I V PGPF I+D+Y + +GDL V + EADGS F+VP++SVP R G +RYS Sbjct: 318 YDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYS 377 Query: 365 FTLGQARQYGDGDD--LFADFTYQRGMSNALTANLGLRVADDYLA-MLGGGVLATRFGAF 421 T G+ R + F T G+ T G ++AD Y A G G GA Sbjct: 378 ITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGAL 437 Query: 422 GLNSTYSSARVEDGARKQGWRIGLDYSRTFQPTGTTLTLAGYRYSTEGYRELGDVLGSRD 481 ++ T +++ + D ++ G + Y+++ +GT + L GYRYST GY D SR Sbjct: 438 SVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRM 497 Query: 482 ALRHGDTWD-------------SGSYKQRNQFNLLVSQALGGYGNLYLSGSSSDFYDGKS 528 + +T D + +Y +R + L V+Q LG LYLSGS ++ + Sbjct: 498 NGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSN 557 Query: 529 RDTQLQFGYSNTWGQLSYNLAWSRQTTTYYQEQGDQDPGVELLRRDRRSGQRNDTLTLSV 588 D Q Q G + + +++ L++S ++ R+ L L+V Sbjct: 558 VDEQFQAGLNTAFEDINWTLSYSLT-------------------KNAWQKGRDQMLALNV 598 Query: 589 SMPLGSSSRAPTLSA-----MATRRSGDSRGG-SLQTGLNGTLGDERTWSYALSA---NR 639 ++P R+ + S + S D G + G+ GTL ++ SY++ Sbjct: 599 NIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGG 658 Query: 640 DSEVADTTWNGTLQKQAALATVNAGYAQGDRYRQYSGGIRGALVAHRDGLTLGPSVGDTF 699 + +T TL + N GY+ D +Q G+ G ++AH +G+TLG + DT Sbjct: 659 GDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTV 718 Query: 700 ALVEAKGASGAAIRGGQGARIDGNGYALAPSLSPYRYNPISLDPVGIDPDAELLETERKV 759 LV+A GA A + G R D GYA+ P + YR N ++LD + + +L V Sbjct: 719 VLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANV 778 Query: 760 APYAGASVRVTFRTLTGHPLLIQARREDGSVLPLGAVVVDDGGAAIGMVGQGGQVYARAE 819 P GA VR F+ G LL+ + LP GA+V + + G+V GQVY Sbjct: 779 VPTRGAIVRAEFKARVGIKLLMTLTH-NNKPLPFGAMVTSESSQSSGIVADNGQVYLSGM 837 Query: 820 NQRGRLLVQWGTARKERCELPYDLAGVSRDQALIRLRGTCR 860 G++ V+WG C Y L S+ Q L +L CR Sbjct: 838 PLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR 878
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 2e-04 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 58 VLVLEEHAEQLWRIEEFLLDRGYAVLSAASRDEALDHLASDAVIDLFLLSEQLEGPLSGS 117 +LV ++ A + + L GY V ++ +A+ DL + + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPD-ENAF 63 Query: 118 MLIETSLPVRPRMRVILLSD 137 L+ RP + V+++S Sbjct: 64 DLLPRIKKARPDLPVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 333 bits (856), Expect = e-110 Identities = 136/364 (37%), Positives = 191/364 (52%), Gaps = 24/364 (6%) Query: 304 ITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESG 363 I + RA + L G S A +E+ ++ R + T++ITGESG Sbjct: 112 IGIIGRALAEPKRRPSKLE-DDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 364 TGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEA 423 TGKEL+A+ +H+ RR+GPFVAIN AA P L+ESELFG+E+GAF+G+ + G FE Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA-QTRSTGRFEQ 229 Query: 424 AHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIVAATHKDLGAAMKD 483 A GTLFLDEIGDMP+ QTRLLRVLQ+ E +GG PI DVRIVAAT+KDL ++ Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQ 289 Query: 484 REFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLPYLV 543 FR DLYYRLN++ L+ PLR+R EDIP + + Q+ +G L + Sbjct: 290 GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDV--KRFDQEALELMK 347 Query: 544 RHSWPGNVRELENVIERAM-LSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRT 602 H WPGNVRELEN++ R L ++ ++ + + E S+ Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 603 KDLHAIGKTAQL-------------------RYIQETLDSCQGSLDEAARRLGISRTTLW 643 + + A I L + +G+ +AA LG++R TL Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 644 RRLR 647 +++R Sbjct: 468 KKIR 471
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (282), Expect = 3e-32 Identities = 71/253 (28%), Positives = 123/253 (48%), Gaps = 14/253 (5%) Query: 10 ALDGRRALVTGASSGLGRHFAMTLAAAGAEVVVTARRQAPLQALVEAIEVAGGRAQAFAL 69 ++G+ A +TGA+ G+G A TLA+ GA + L+ +V +++ A+AF Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 70 DV----TCREDICRVLDAAGPLDVLVNNAGVSDSQPLLACDDQSWDRVLDTNLKGAWAVA 125 DV E R+ GP+D+LVN AGV + + D+ W+ N G + + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 126 QESARRMVAAGKGGSLINVTSILASRVAGAVGPYLAAKAGLAHLTRAMALELARHGIRVN 185 + ++ M+ + GS++ V S A ++ Y ++KA T+ + LELA + IR N Sbjct: 125 RSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 186 ALAPGYVMTDLNEAFLASEAGDKLRSR---------IPSRRFSVPADLDGALLLLASDAG 236 ++PG TD+ + A E G + + IP ++ + P+D+ A+L L S Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 237 RAMSGAEIVVDGG 249 ++ + VDGG Sbjct: 244 GHITMHNLCVDGG 256
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 26.5 bits (58), Expect = 0.026 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 50 LIARRLAQGSNMTFGVAAGVFLFVFFCALSALYVYRANGEFDRLTQ 95 +IA+R AQG + + AAG+ A+S L +F R + Sbjct: 291 IIAQRAAQGLSTS-AAAAGLIASAVTLAISPLSFLSIADKFKRANK 335
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.4 bits (120), Expect = 5e-10 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 11/190 (5%) Query: 3 RVGAEVRRQDFIEAAVKVIAEYGVANATTRRIAAAANSPLASLHYVFHTKDELFDAVYES 62 + A+ RQ ++ A+++ ++ GV++ + IA AA ++++ F K +LF ++E Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 63 LIDKPQQSLLHVTA--GATAADSVAEILRQLVGWFTTHPE-----LATTQFELFFWNLRN 115 + L A + EIL ++ T F + Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 116 NPAMASKIYTDSVEATKQAIEQV--AGSVLDQEALATVSRLLINLFDGLLLAWSAHGDQE 173 + +S + +Q ++ A + + ++ GL+ W + Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF--APQ 183 Query: 174 RLNAETEAAC 183 + + EA Sbjct: 184 SFDLKKEARD 193
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 73.3 bits (180), Expect = 2e-15 Identities = 33/209 (15%), Positives = 80/209 (38%), Gaps = 9/209 (4%) Query: 586 TTINRVVDAAKAFRSEYPMSGISIRLASGNAGVLAAINEEVEKSETPMLLYVYAAIALLV 645 T + + +P G+ + + EV K+ L + L++ Sbjct: 301 DTAKAIKAKLAELQPFFP-QGMKVLYPYDTTPFVQLSIHEVVKT----LFEAIMLVFLVM 355 Query: 646 FVVYRDLRAVLVCCLPLTIGTFIGYWFMKELQIGLTIATLPVMVLAVGIGVDYAFYIYNR 705 ++ +++RA L+ + + + + + + T+ MVLA+G+ VD A + Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 706 LQLHLAHGQTITK-AVEYALLEVGVATIFTAITLAVGVATWAF---SELKFQADMGKLLA 761 ++ + + K A E ++ ++ A + A+ L+ AF S + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 762 FMFVVNMVMAMTVLPAFAVWLERAFPRKR 790 +++++A+ + PA L + + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEH 504 Score = 41.0 bits (96), Expect = 2e-05 Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 11/216 (5%) Query: 233 IADGASAVLEFCLLALLLTAGAVYWYCHSLRFTLLALVCSLASLVWQFGSLRLLGYGLDP 292 + V++ A++L +Y + ++R TL+ + L+ F L GY ++ Sbjct: 333 VQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT 392 Query: 293 LAVLVPFLVFAIGVSHGVQQINFIVREIAIGKS----AEEAARSSFTGLLVPGTLALVTA 348 L + L + V + + + R + K A E + S G LV + L Sbjct: 393 LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAV 452 Query: 349 LVSFVTLLLIPIPMVRELAITASLGVAYKIVTNLVMLPLMASLLRVDDKYAAAQEVSRQR 408 + + R+ +IT +A ++ L++ P + + L K +A+ + Sbjct: 453 FIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL---KPVSAEHHENKG 509 Query: 409 R-SRWL-RGLARLAE--PRKAQWVLGAALAVFLAAI 440 W +LG+ L Sbjct: 510 GFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYA 545 Score = 35.6 bits (82), Expect = 0.001 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 18/175 (10%) Query: 625 EVEKSETPMLLYVYAAIALLVFVV----YRDLRAVLVCCL--PLT-IGTFIGYWFMKELQ 677 E+ + A ++VF+ Y + L PL +G + Sbjct: 863 YQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF---N 919 Query: 678 IGLTIATLPVMVLAVGIGVDYAFYIYNRL-QLHLAHGQTITKAVEYALLEVGVATIFTAI 736 + + ++ +G+ A I L G+ + +A A+ + T++ Sbjct: 920 QKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSL 979 Query: 737 TLAVGV-----ATWAFSELKFQADMGKLLAFMFVVNMVMAMTVLPAFAVWLERAF 786 +GV + A S Q +G + V ++A+ +P F V + R F Sbjct: 980 AFILGVLPLAISNGAGSGA--QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCF 1032
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.005 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 9/113 (7%) Query: 276 RAAIGSPGTGVNGFRRSHLEALTTQRLMGRLAGAPAVATIDQVRMVSLMTQDDRAARQFV 335 R P + R +E + + A A + + + ++ R Sbjct: 364 RLTALYPQDVI---TREIIE-NELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 336 LSTLGRLATEPSVL-----QRSLHAFLANGCNVTQTAEALGTHRNTLLRRLER 383 L VL L A A N + A+ LG +RNTL +++ Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>cloacin#Cloacin signature. Length = 551 Score = 47.0 bits (111), Expect = 2e-08 Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 15/115 (13%) Query: 17 GGDGGGTGGG--------DGGGTGGGTGGGGDGGTGGGD------GGTGGGDGNGGTGGG 62 GGDG G G +GG TG G GGG G+G GG+G G GG G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 63 DGDGGGTGGGGDGGGDGQCDPAKDPNKCGSGSSISGDGDCKVAIQCNGDAIQCAI 117 GG GG G G P G ++S G +A+ + A+ AI Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGF-PALSTPGAGGLAVSISAGALSAAI 116 Score = 40.1 bits (93), Expect = 5e-06 Identities = 24/58 (41%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 16 PGGDGGGTGGGDGGGTG------GGTGGGGDGGTGGGDGGTGGGDGNGGTGGGDGDGG 67 P G G G G DG G GG G G GG G GGG+GN G G G G Sbjct: 24 PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 38.2 bits (88), Expect = 2e-05 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Query: 13 PKDPGGDGGGTGG----------GDGGGTGGGTGGGGDGGTGGGDGGTGGGDGNGGTG 60 P G GG + G G G G+G GGG G GGG+G +GGG G GG Sbjct: 24 PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Score = 31.6 bits (71), Expect = 0.002 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Query: 15 DPGGDGGGTGGGDGGGTGGGTGGGGD---GGTGGGDGGT 50 +P G G G+G GGG+G G GGG GG+G G + Sbjct: 44 NPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 27.8 bits (61), Expect = 0.048 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 11 TDPKDPGGDGGGTGGGDGGGTGGGTGGGGDG 41 + GG G G GGG G +GGG+G GG+ Sbjct: 52 SGIHWGGGSGHGNGGG-NGNSGGGSGTGGNL 81
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.0 bits (59), Expect = 0.044 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 23/129 (17%) Query: 14 LEQPKRGRGRPATGKALTDAERARRYRANKKKRDDQPSRKDAPSIPADGVKEILDGWQRT 73 Q D + D+ P AP+ P++ + + + ++ Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQE 1047 Query: 74 QDELDQALQRIAELE-----------------------AELASRVTKKEEAEAKTWAIQE 110 +++ Q E A+ S + + E K A E Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 111 RKGKARWQT 119 ++ KA+ +T Sbjct: 1108 KEEKAKVET 1116
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.4 bits (92), Expect = 2e-05 Identities = 15/150 (10%), Positives = 51/150 (34%), Gaps = 5/150 (3%) Query: 83 AQADVAQEREQLARERLDYQNQIRQAESRIQQLEGQCAGLTEQFQAAQQALLQEQQ---- 138 ++ +V + + + +QNQ Q E + + + + + + E+ Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Query: 139 LRQQAEVENARLQQANHDQEARLQDRDGQIRSLEDKHQHARDALEHYRQASKEQREQEQR 198 + A + A +QE + + ++R + + + + ++ + + + Sbjct: 240 FSSLLH-KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 199 RHESQVQQLQLELRQLQQTLIVKQDELTHL 228 +++Q + L L ++ Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQAS 328 Score = 36.0 bits (83), Expect = 2e-04 Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 7/198 (3%) Query: 125 QFQAAQQALLQEQQLRQQAEVENARLQQANHDQEARLQDRDGQIRSLEDKHQHARDALEH 184 Q +LLQ + + + ++ + ++ + + Q S E+ + E Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194 Query: 185 Y--RQASKEQREQEQRRHESQVQQLQLELRQLQQTLIVKQDELTHLNRDNARLLAEARQQ 242 + Q K Q+E + ++ + + + + V++ L D + LL + Sbjct: 195 FSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD----DFSSLLHKQAIA 250 Query: 243 QKDQHAQQKLLTQKAQALEVAQNTLTSIERTNEALEQRCHALQDEVTRLGEASSIQAQ-Q 301 + Q+ + L V ++ L IE + ++ + Q Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 302 TQSLQERLAKATAQLKLL 319 L LAK + + Sbjct: 311 IGLLTLELAKNEERQQAS 328 Score = 34.4 bits (79), Expect = 6e-04 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 4/199 (2%) Query: 125 QFQAAQQALLQEQQLRQQAEVENARLQQANHDQEARLQDRDGQIRSLEDKHQHARDALEH 184 + LL+ L +A+ + E + L + + Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 185 YRQASKEQREQEQRRHESQVQQLQLELRQLQQTLIVKQDELTHLNRDNARLLAEARQQQK 244 ++ S+E+ + + Q Q + Q + L K+ E + R +R ++ Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 245 DQHAQQKLLTQKA---QALEVAQNTLTSIERTNEALEQRCHALQDEVTRLGEASSIQAQQ 301 LL ++A A+ +N + + ++ E+ E + Q Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 302 TQSLQ-ERLAKATAQLKLL 319 ++ ++L + T + LL Sbjct: 296 FKNEILDKLRQTTDNIGLL 314
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.6 bits (100), Expect = 1e-07 Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 86 IDEFYIDEQCRGQGFGSEILEKVKSFLKSQGAAIVHLEVDENNPKAVSFYKKSGF 140 I++ + + R +G G+ +L K + K + LE + N A FY K F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>OUTRSURFACE#Outer surface protein signature. Length = 273 Score = 25.3 bits (55), Expect = 0.016 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Query: 16 DGSGDAIIELPSALLDGLGWVVGDELILEHIEGVLSLKRKLSPS 59 DG+G A L + L+G V D++ LE EG ++L ++++ S Sbjct: 153 DGTGKAKEVLKNFTLEGK--VANDKVTLEVKEGTVTLSKEIAKS 194
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 29.1 bits (65), Expect = 0.035 Identities = 8/28 (28%), Positives = 15/28 (53%) Query: 193 LYFGFIYRGKGIEDLLEALADLFASAPE 220 +Y G GI++L+E + + F S+ Sbjct: 216 VYHGSAKNNIGIDNLIEVITNKFYSSTH 243
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 45.6 bits (108), Expect = 2e-07 Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 7/170 (4%) Query: 35 FVAILSETLPAGLLPQIGAGLAVSEALAGQLVSVYALGSLLAALPAASLTQGWRRRRVLL 94 F ++L+E + LP I A + + + L + L+ +R+LL Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 95 LALLIFFVCNSLTAIS-SDYRLTLLARFGSGVAAGLAWGLLAGYARRLVPPEQQGRALAV 153 ++I + + + S + L ++ARF G A L+ R +P E +G+A Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAF-- 141 Query: 154 AMLGAPLALSLGVPLGTWLGGLLG--WRWAFGLLSLTALLLVGWVLRSVP 201 ++G+ +++G +G +GG++ W++ LL ++ L + Sbjct: 142 GLIGS--IVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL 189
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.025 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 37 VVSILGPSGVGKSSLLRVLAGLQ 59 V + G G+GKS+L+ L GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.009 Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 26/129 (20%) Query: 32 VVFVGPSGCGKSTLLRLIAGLEEASGGSIALDGTDITDTPPAKRDLAMVFQTYALYPHMT 91 VV G G GKSTL+ + GL+ S + +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY---- 645 Query: 92 VRRNLSFALDLAGVDKREVAA-KVDAAARILELQALLERKPRQLSGGQRQRVAIGRAIVR 150 LS ++ + + A K ++R + R + RQ V Sbjct: 646 ---ELS---EMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHP---RQVVIWCTT--- 693 Query: 151 NPKIFLFDE 159 N + +LFD Sbjct: 694 NKRQYLFDI 702
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 362 bits (932), Expect = e-125 Identities = 132/350 (37%), Positives = 184/350 (52%), Gaps = 13/350 (3%) Query: 8 HARELTKSVRATVLVFNDPRSRELLERIERLAPSEANALVIGETGTGKELVARHIHALSG 67 ++ S LV +E+ + RL ++ ++ GE+GTGKELVAR +H Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGK 185 Query: 68 RNGGPFVAVNCGAFAESLVESELFGHEKGAFTGALQSKAGWFEAANGGTLFLDEIGDLPP 127 R GPFVA+N A L+ESELFGHEKGAFTGA G FE A GGTLFLDEIGD+P Sbjct: 186 RRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPM 245 Query: 128 SIQVKLLRVLQEREVVRLGSRRPIPIDVRLVAATNVDLADAVVAGHFREDLFYRLHVATI 187 Q +LLRVLQ+ E +G R PI DVR+VAATN DL ++ G FREDL+YRL+V + Sbjct: 246 DAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPL 305 Query: 188 QLPPLRERRGDILPLAEYFIVEHCRRLGYTSASLSPEAERKLLGHSWAGNIRELENAIHH 247 +LPPLR+R DI L +F+ + + G EA + H W GN+RELEN + Sbjct: 306 RLPPLRDRAEDIPDLVRHFV-QQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRR 364 Query: 248 ALLVCRNRLIQPADLH-----------LIDMRARQEPSGLRRAPESAAGSALEAALQALF 296 + +I + + AR + +A E + AL Sbjct: 365 LTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALP 424 Query: 297 EEN-REDLYEHIEETVFRAAYRFCHGNQLQTGRLLGISRNIVRARLEKIG 345 + + +E + AA GNQ++ LLG++RN +R ++ ++G Sbjct: 425 PSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.0 bits (86), Expect = 2e-04 Identities = 18/36 (50%), Positives = 22/36 (61%) Query: 522 YTRNAARTIGLEHRIGSLEPGKQADFIVLDRDVFEV 557 YT N A GL H IGSLE GK+AD ++ + F V Sbjct: 409 YTINPAIAHGLSHEIGSLEVGKRADLVLWNPAFFGV 444 Score = 30.9 bits (70), Expect = 0.018 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%) Query: 19 HALGAADLLVVNARIFTANPQQPFAEALAVEDGRILAVGDEAGLRALADGDSQVVDLG-- 76 GA D ++ NA I + + ++DGRI A+G +AG + G + +V G Sbjct: 63 REGGAVDTVITNALIL--DHWGIVKADIGLKDGRIAAIG-KAGNPDMQPGVTIIVGPGTE 119 Query: 77 -----GKRLMPGLIDTHSH 90 GK + G +D+H H Sbjct: 120 VIAGEGKIVTAGGMDSHIH 138
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 331 bits (851), Expect = e-111 Identities = 120/355 (33%), Positives = 179/355 (50%), Gaps = 35/355 (9%) Query: 186 ERLAALHHDHAEGFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHA 245 +R + D ++ L+G S ++ + R+ D L+I GE+GTGKELVAR H Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD 182 Query: 246 LSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLLELAHQGTVFLDEIG 305 R N PF+A+N AA+P +L ESELFG+ GAFTGAQ G E A GT+FLDEIG Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-GRFEQAEGGTLFLDEIG 241 Query: 306 EMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLN 365 +M Q +LLR L G + VGG +R DVRI++AT+++L++ + +G FREDL+YRLN Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 366 VLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLNNRWPGNVRQLQN 425 V+ L +PPLR+R DI L RHF+QQA + V R + + WPGNVR+L+N Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 426 VIFRAAAICESSLVDIGDLEIAGTAVARQND----------------------------- 456 ++ R A+ ++ +E + + Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 457 ---GEVGSLEEAVEGFEKALLEKLYVSYPSTRQLAAR-LQTSHTAIAHRLRKYGI 507 G + + E L+ + + AA L + + ++R+ G+ Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 4e-04 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 103 LSHAYRRRGLGAHLFHLAATQARHLGASGLYVSATPSQN--TVDFYTRLGCRLCMEPDEE 160 ++ YR++G+G L H A A+ GL + T N FY + + D Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLE-TQDINISACHFYAKHHFIIG-AVDTM 154 Query: 161 LYRLEPED 168 LY P Sbjct: 155 LYSNFPTA 162
>PF01540#Adhesin lipoprotein Length = 475 Score = 27.4 bits (60), Expect = 0.030 Identities = 11/30 (36%), Positives = 20/30 (66%) Query: 60 EYPAIISRLRVAIESYQGRVKWVLDEHKRV 89 +YPAIIS+L A+E+ + + V +K++ Sbjct: 87 DYPAIISKLSAAVENAKSEQQKVDQANKKI 116
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 34.1 bits (78), Expect = 0.002 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 15 LDFPRASRLSRSVRAALLSLAMAAGAAPLCASAAEAAAEQARPYAIPAGQ--LGDVLNRF 72 + FP S R + LL L+ + A L PY A L D+L F Sbjct: 1 MAFPLHSFFKRVLTGTLLLLSSYSWAQEL--------DWLPIPYVYVAKGESLRDLLTDF 52 Query: 73 AREAGITLSATPAQTGGYSSQ 93 T+ + S Q Sbjct: 53 GANYDATVVVSDKINDKVSGQ 73
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 27.7 bits (61), Expect = 0.030 Identities = 13/43 (30%), Positives = 20/43 (46%) Query: 59 RGLRPTPYGMTLFNHAQRVLTEMERARQNLEAMRSGSGSRVLL 101 PTP G+ L N +T + R ++ R+ SG+ V L Sbjct: 76 VSWSPTPDGIWLMNAEGTGITHLNRQKEGEYTGRTPSGADVTL 118
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 48.7 bits (116), Expect = 3e-08 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 3/178 (1%) Query: 31 LCFLIVAMDGFDTAAIGFIAPALAHDWQLSPAQLSPILGAALAGLALGAFAAGPLADRFG 90 LC L + + P +A+D+ PA + + A + ++G G L+D+ G Sbjct: 19 LCIL-SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLG 77 Query: 91 RKSVLLLSVLFFGGWSLASAYAGS-VETLALLRFFTGLGLGGAMPNAITLTSEYCPRRHR 149 K +LL ++ S+ S L + RF G G + + + Y P+ +R Sbjct: 78 IKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENR 137 Query: 150 ALMVTAMFCGFTLGSALGGLLAARMVPALGWESVLLLGGGLPLASLPLLWACLPESVR 207 + +G +G + + + W S LLL + + ++P L L + VR Sbjct: 138 GKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW-SYLLLIPMITIITVPFLMKLLKKEVR 194 Score = 30.6 bits (69), Expect = 0.011 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 13/196 (6%) Query: 256 AELRGGTLLLWATF--FMGLLIIYLLTNWLPTLIGGTGFSLGEAATISAMFQLGGTLGAL 313 + LR +L+W F +L +L LP + ++ F L ++G Sbjct: 8 SNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTA 67 Query: 314 LLGSAMDRFDAHRVLSLAYVGGALFILG--IASLYHSFA---LLALCVAGVGFCISGSQV 368 + G D+ R+L G + G I + HSF ++A + G G + V Sbjct: 68 VYGKLSDQLGIKRLLLF---GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALV 124 Query: 369 GANALAADFYPTRSRATGVSWALGLGRIGSIVGSLSGGALLG-LGLGFSGILALLVIPAL 427 + A + P +R + +G VG GG + + + ++ ++ I + Sbjct: 125 M--VVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITV 182 Query: 428 LAAVAVHRLGRRRARP 443 + + + R Sbjct: 183 PFLMKLLKKEVRIKGH 198
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 2e-20 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 2 HVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGLR 61 +L+ +DD I + + L+ G V ++AA + D++V D+ +PDE+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHT-LQRRSA 120 LL R+++ DLPVLV++A++ + + GA DYL KPFDL EL + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GR 122 Sbjct: 125 RP 126
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.8 bits (121), Expect = 4e-10 Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 11/201 (5%) Query: 1 MAKRGRPCGFD-REQALRRALDVFWEAGYEGATMAALKEAMGGICAPSMYAAYGSKEALF 59 MA++ + + R+ L AL +F + G ++ + +A G+ ++Y + K LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAA-GVTRGAIYWHFKDKSDLF 59 Query: 60 RSAVELYLSQECQLSKGAFA------LPTARESIAALLESAAVSYTTEGKPRGCLVDLST 113 EL S +L A L RE + +LES T E + + Sbjct: 60 SEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST---VTEERRRLLMEIIFHK 116 Query: 114 TNFSPANKGVEDYLRDHRRRAARLLRERFARGVADGDVPAGADLDALTSFYSSVLQGLSI 173 F V+ R+ + + + + +PA + GL Sbjct: 117 CEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176 Query: 174 QARDGASRQQLLAIGRCAMAA 194 L R +A Sbjct: 177 NWLFAPQSFDLKKEARDYVAI 197
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 34.3 bits (78), Expect = 7e-04 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 237 QKVASIQNSYYLSTVYREVLKSQRDTLVVYGWGFAEQDIHL-LQRMKDTGINRVAVSVFR 295 Q S+ SYY + +R VL+ + Y + + +K G+ + + V + Sbjct: 238 QHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLK 297 Query: 296 GDQA 299 G++A Sbjct: 298 GEKA 301
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.9 bits (90), Expect = 1e-04 Identities = 39/251 (15%), Positives = 77/251 (30%), Gaps = 24/251 (9%) Query: 451 NGEASEEAETDDENVAEALFASPATAANTDGEQALSQQQKKAPEGLMAWLGRHNQLNKER 510 A E+ +D++++E + + +A ++ + + E Sbjct: 94 LSNAKEKLRKNDKSLSEKA----SKIQELEARKADLEKALEGAMNFSTADSAKIK-TLEA 148 Query: 511 TPDQRQALWQQAVAEYQAAKAQVRTVCADAHRIRALIQTLLTARKKIAE----------- 559 A + A A + A L + ++ + Sbjct: 149 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 208 Query: 560 ATATVQALEQNLAHTAEQQARLDTEEGRPANAAFKHALETLTQHQVRRPGFWANLRSLWG 619 +A ++ LE A A ++A L+ A + + + A L Sbjct: 209 DSAKIKTLEAEKAALAARKADLEKALEG-AMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 620 ASRAWNTALKLLQGQHDLAKAEFDRV----ARLAKQ---FEASSQQLERQITGARQALQQ 672 A + +AE + A L Q A+ Q L R + +R+A +Q Sbjct: 268 ALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQ 327 Query: 673 WQAEDQSLTQQ 683 +AE Q L +Q Sbjct: 328 LEAEHQKLEEQ 338 Score = 33.9 bits (77), Expect = 0.004 Identities = 44/260 (16%), Positives = 77/260 (29%), Gaps = 21/260 (8%) Query: 449 DSNGEASEEAETDDENVAEALFASPATAANTDGEQALSQQQKKAPEGLMAWLGRHNQLNK 508 + + E A A +KA EG M + + K Sbjct: 120 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK 179 Query: 509 ERTPDQRQ--ALWQQAVAEYQAAKAQVRTVCADAHRIRALIQTLLTARKKIAEATATVQA 566 ++ A + + A A + A L + + +A Sbjct: 180 TLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 567 LEQNLAHTA-----------EQQARLDTEEGRPAN--AAFKHALETLTQHQVRRPGFWAN 613 + +QA L+ N A ++TL + A+ Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 614 LRSLWGASRAWNTALKL-LQGQHDLAKAEFDRVARLAKQF---EASSQQLERQITGARQA 669 L A +L+ L + K +L +Q EAS Q L R + +R+A Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREA 359 Query: 670 LQQWQAEDQSLTQ--QASDL 687 +Q +AE Q L + + S+ Sbjct: 360 KKQLEAEHQKLEEQNKISEA 379
>cloacin#Cloacin signature. Length = 551 Score = 28.1 bits (62), Expect = 0.011 Identities = 15/52 (28%), Positives = 22/52 (42%) Query: 40 FVLLSDTAPPAEEHEHSPEEKKRLALWMKKHKVELRKLVLAMIQIEPNQAKR 91 +V +SD P + + EE +R W H VE + + E NQA Sbjct: 284 YVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANE 335
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.7 bits (111), Expect = 8e-08 Identities = 21/167 (12%), Positives = 61/167 (36%), Gaps = 15/167 (8%) Query: 114 ASAKADFAQLQLKRSQELAPTGAEPRETLEQRKAEAAQAVAAVRQLDARIQQKAIRAPFT 173 +++ + + E + L Q + + + R Q IRAP + Sbjct: 276 EQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVS 335 Query: 174 GQLGIRRIN-PGQYLNAGDAIATLT-QLDPLYINFTLPQQDLSKLTPGAPVQVTLDAAPG 231 ++ +++ G + + + + + D L + + +D+ + G + ++A P Sbjct: 336 VKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPY 395 Query: 232 QVFDAKVSAIEPRIDGETRNVAVQALLPNAGRLLKSGMYATVRLTLP 278 + + G+ +N+ + A+ + G+ V +++ Sbjct: 396 TRY--------GYLVGKVKNINLDAIEDQ-----RLGLVFNVIISIE 429 Score = 36.0 bits (83), Expect = 2e-04 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 74 LAPDTSGRVTAIYFDAGQTVKEGTVLVQLYDAPEQSDRAAASAKADFAQLQLKRSQELAP 133 + P + V I G++V++G VL++L ++D + A+L+ R Q Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ--IL 156 Query: 134 TGAEPRETLEQRKAEAAQAVAAVRQLDARIQQKAIRAPFT 173 + + L + K V + + I+ F+ Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS 196
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 779 bits (2013), Expect = 0.0 Identities = 310/1029 (30%), Positives = 518/1029 (50%), Gaps = 28/1029 (2%) Query: 5 DIFIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTSLPGATQDVMQGFVT 64 + FIRRPI A V+++++++ GA A+ LPV QYP + +++S + PGA +Q VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 TPIAQSIATASGIEYLSSTT-KQGKSEIKARLVLNANADRTMTEILAKVQQVKYQLPAGV 123 I Q++ + Y+SST+ G I + D ++ K+Q LP V Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 TDPVISKSTEGGTAVQYIAFYSKTLSIPQ--VTDFASRVAQPLFTSIPGVASADVFGGQS 181 IS + + F S Q ++D+ + + + + GV +FG Q Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ- 181 Query: 182 LAMRIWIDPVRLAAHGLSAGEISAALRANNVQAAPGQLKSSLTVT------NISAATDLR 235 AMRIW+D L + L+ ++ L+ N Q A GQL + + +I A T + Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 GVEDFRQMVVKSSPGGGVVRLSDVATVEVGGQNYNNLSFATGVPAIFVALQPTPDGNPLE 295 E+F ++ ++ + G VVRL DVA VE+GG+NYN ++ G PA + ++ N L+ Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 296 IVKHANELLPKIRAMAPPGLTVAPNYDVARFVNASIEEVKHTLIEAIVIVIVVIFLFLGT 355 K L +++ P G+ V YD FV SI EV TL EAI++V +V++LFL Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 356 FRAVIIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHI- 414 RA +IP + +P+ L+GT A++ A G+SIN LT+ MVLAIGL+VDDAIVVVEN+ R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EEGLTPVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVS 474 E+ L P A +I G ++ + + L+AV+ P+ GG TGA++++F+ T+ ++ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 475 GIVALTLSPVMSSMLL-----SSKQGEGRLAKRVEHAMEGLTALYGRLLAHTLAARGAVL 529 +VAL L+P + + LL + +G + Y + L + G L Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 530 LVGAIVLVAIVGLFAGTRHELAPTEDQGAIIVVTKAPQYAGVGYTSRYAQQIEK-LFESI 588 L+ A+++ +V LF P EDQG + + + P A T + Q+ ++ Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 589 PEFDSSFMNIGDYA---GGQNMMIGGAILKDWSERKR---SATDIQGQIQTAGGAIDGQT 642 S + ++ QN + LK W ER SA + + + G I Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 643 LTAVQLPP--LPGSSGGLPVQMVLRSPDDFKSLYETGEKI-KMAAYASGLFLYVQNDLSF 699 + +P G++ G +++ ++ +L + ++ MAA + V+ + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 700 DSPQAHITIDNAKASEMGVTMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGGERMT 759 D+ Q + +D KA +GV++ I T++ +G YVN F R + Q RM Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 760 PDDLGRFYVKATSGALVPLSTVARVEMRPQANQLTQFGQMNSATLEMLPAPGVSMGEAVA 819 P+D+ + YV++ +G +VP S + +L ++ + S ++ APG S G+A+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 820 FLQSQP--LPPGTSVDWLSDSRQFVQEGNRLLVSFGFALVVIFLVLAAQFESLRDPLVIL 877 +++ LP G DW S Q GN+ + VV+FL LAA +ES P+ ++ Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 878 VTVPLAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENMSRIE 937 + VPL + G L+ L ++Y +GL+T IGL +K+ IL+V FA + E +E Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 938 AIEKAAAVRMRPVLMTTAAMVAGLVPLLFADGAGSASRFSIGIVVVMGMMVGTFFTLFVL 997 A A +R+RP+LMT+ A + G++PL ++GAGS ++ ++GI V+ GM+ T +F + Sbjct: 962 ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFV 1021 Query: 998 PTIYSFIAK 1006 P + I + Sbjct: 1022 PVFFVVIRR 1030
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 29.3 bits (65), Expect = 0.042 Identities = 35/134 (26%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 280 ALGAAGTAVAVGAAATGVGGAVAAGARMAPVAAKMAASGARTAASTAGSARSAFQAGSAA 339 A GA +GA+ + G G R A VAA GA A R AG A Sbjct: 213 ASGAPAAVSVLGASELTLDGGHITGGRAAGVAAM---QGAVVHLQRATIRRGDAPAGGAV 269 Query: 340 AGGGAKGAMAGLGNVAKSGAQAVGQKAA--AGARSLKERAAAAFRSEGAGSASS-GSGGA 396 GG G A G G V + S E A + + G+A G G Sbjct: 270 PGGAVPGG-AVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGAR 328 Query: 397 AAGAATPGSEATAN 410 + S N Sbjct: 329 VTVSGGSLSAPHGN 342
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 56.4 bits (136), Expect = 8e-12 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 12/207 (5%) Query: 20 YQAAAQVWD-ERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVVEVDKS 78 Y A W+ +++ +A K ++A LA + + V PYV+ VD++ Sbjct: 13 YFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRN 72 Query: 79 GQVRAVGE---AATPYRPADAQIAYHLAHFVTLVRSLSIDPIVVRQNWLDAYDYATDRGA 135 ++ +A Y LA +V + + + Sbjct: 73 TGEASIAAKLHGDATITYDEAVRKYFLATYVRYRE--GWIAAAREEYFDAVMVMSARPEQ 130 Query: 136 A-VLNDYASKN--DPFARIGKE-SVTVQITSVVRASESSFNVRWTEQRFVNGAPAGTERW 191 Y + N P + V V+I V + V +T + V G+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDA 189 Query: 192 NAVISI-VLQTPRTEQRLRKNPLGIYV 217 A I V TP E KNPLG V Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQV 216
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.7 bits (69), Expect = 0.006 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Query: 23 QGKPPPRISLDEPVQAQPLPEPPKPVEVV---AVPKVLPMPAQMKPLPEADDAKPTPEPA 79 +PPP ++ + +P+PEPPK VV PK P P +K + + E Sbjct: 65 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR 124 Query: 80 DETVRVSRANAEARIAPTREG 100 + + A A + Sbjct: 125 PASPFENTAPARPTSSTATAA 145 Score = 29.6 bits (66), Expect = 0.014 Identities = 15/73 (20%), Positives = 22/73 (30%) Query: 26 PPPRISLDEPVQAQPLPEPPKPVEVVAVPKVLPMPAQMKPLPEADDAKPTPEPADETVRV 85 PP + +P PEP E V+ + KP P+ K +P + V Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121 Query: 86 SRANAEARIAPTR 98 A Sbjct: 122 ESRPASPFENTAP 134
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 5e-04 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 44/188 (23%) Query: 288 REGIGRVRKIVQDLKNFSR-VDAEDDWQWTDLHQGIESTLNIVASE-------LKYRADV 339 E + R+++ L R + + L + + + L++ + Sbjct: 187 LEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQI 246 Query: 340 VREYGDLPEVKCLPSQINQVVMNLVMNAAQ-AMGPER--GRIVIRTGHTVEHAWIEVEDS 396 D+ +P + Q LV N + + G+I+++ +EVE++ Sbjct: 247 NPAIMDVQ----VPPMLVQT---LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299 Query: 397 GQGISPEILPRIFDPFFTTKPVGKGTGLGLS-------LSYGIVQKHGGTIEVRSQPGVG 449 G K + TG GL + YG + I++ + G Sbjct: 300 GSLA--------------LKNTKESTGTGLQNVRERLQMLYG--TEAQ--IKLSEKQGKV 341 Query: 450 SAFRIVLP 457 +A +++P Sbjct: 342 NA-MVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 106 bits (265), Expect = 6e-27 Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 5/154 (3%) Query: 14 RFSVLLVDDEPLILSSLRRLLRNQPYDLLLAESGEQALQLLESRPVDLVVSDARMPNMDG 73 ++L+ DD+ I + L + L YD+ + + + + + DLVV+D MP+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 74 AALLAEIHRRSPETIRILLTGHADLPTIAKAINEGRIHHYLSKPWNDDELLLTLRQSLEY 133 LL I + P+ ++++ T KA +G + YL KP++ EL+ + ++L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIGRALAE 121 Query: 134 LHSERERRRLERLTQE----QNDRLQQLNATLEK 163 + + ++ +Q++ L + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.5 bits (84), Expect = 2e-05 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 74 DDQVIGHCQLLFDRRNGVVRLARIALAPSARGQGLGLPMLEALLAEAFA-DADIERVELN 132 ++ IG ++ NG + IA+A R +G+G +L A +A + + L Sbjct: 73 ENNCIGRIKIR-SNWNGYALIEDIAVAKDYRKKGVGTALLH--KAIEWAKENHFCGLMLE 129 Query: 133 VYDWNAAARHLYRRAGFREEGL 154 D N +A H Y + F + Sbjct: 130 TQDINISACHFYAKHHFIIGAV 151
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.014 Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 39/257 (15%) Query: 225 DQAARRALAPALLRGLGGAGVAEEALQQAAATFVENTEGLLLLDL-----NAIVQLARVE 279 D AA R + L G L++ D+ NA L R++ Sbjct: 11 DDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIK 70 Query: 280 GLAMER----------IADAVRRYKVGVTE---DPWLKID-RQRIRQADEIVRRRVKGQQ 325 + A++ + G + P+ + I +A +RR + Sbjct: 71 KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLE 130 Query: 326 HAVTHMLDIVKR--AMTGV--GASRKGNRPRGVAFLAGPTGVGKTELAKTVTSLLFGDES 381 + +V R AM + +R + + G +G GK +A+ + Sbjct: 131 DDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL-MITGESGTGKELVARALHDYGKRRNG 189 Query: 382 AYIRFDMSEFSAEHADQRLIGAPPGYVGYDVGGELTNAIREKP--FS-----VVLFDEIE 434 ++ +M+ + + L G G T A F + DEI Sbjct: 190 PFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 435 KAHPRILDKFLQILDDG 451 + L++L G Sbjct: 242 DMPMDAQTRLLRVLQQG 258
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.6 bits (69), Expect = 0.012 Identities = 27/215 (12%), Positives = 64/215 (29%), Gaps = 19/215 (8%) Query: 98 ETRQQHRRLQENASALLQALDARPDAASAALRQTLQALADGALRDDAEALLAQGFAALAS 157 + L+ +S L L+ + + + + +++ + Sbjct: 129 ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT 188 Query: 158 APAEERLSEAQRELAQRLKTDETPITLEQWRARQQQDAPREQRLARIDRHIAELQLLQGE 217 + +E+ S Q + Q E ++ A R LARI+R+ ++ + Sbjct: 189 SLIKEQFSTWQNQKYQ----------KEL--NLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 218 AS------AQAFLERLARAEAEQRPERRNLLLDSLVLDLAQAAREHQQQRQRLE-HLQDL 270 + + + A E E + L L Q E ++ + Q Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 271 ASEVAALGAAEHAELLQRAAACQADSDPQQLAELT 305 +E+ + + + QQ + + Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQASVIR 331 Score = 29.4 bits (66), Expect = 0.032 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 4/122 (3%) Query: 12 REEAIATCERDLQRLDKALARWENQASRLAQLSDAERAAAHARRASLHALLEQERWLDVQ 71 +E + + + + R+EN + D + H + + HA+LEQE V+ Sbjct: 205 KELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKY-VE 263 Query: 72 LQVKIESEFLKRDLAEREERAIRQAAETRQQHRR---LQENASALLQALDARPDAASAAL 128 ++ + + E E + ++ + Q + L + + A Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 129 RQ 130 RQ Sbjct: 324 RQ 325
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.018 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 6/74 (8%) Query: 55 VTLPFGTYSRDGSEGTMTLAEAGQRAKELAGIH---KSGTKDIKEHLEAEEASRIAARDA 111 +TL GT GS G + G +++ A IH K T +K+ +AE+A+R A Sbjct: 22 ITLLNGTPDGSGSGGGG--GKGGSKSESSAAIHATAKWSTAQLKKT-QAEQAARAKAAAE 78 Query: 112 ELARAAAEKAAIAE 125 A+A A + A+ + Sbjct: 79 AQAKAKANRDALTQ 92
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 57.5 bits (139), Expect = 5e-11 Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 49/232 (21%) Query: 5 GFDFGTTNSLISV-----VEGDRCIAYVDEDNGGSPHPSVVCYDGDEVVVGHEAKGRLSS 59 D GT N+LI V V + + + +D GSP VGH+AK L Sbjct: 14 SIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPK--------SVAAVGHDAKQML-- 63 Query: 60 SGLGVIGNVVRSPKTLLG----KHSVHVDGVSRSPRQMVADIVRYVTGHAR-DERPGDYS 114 R+P + K V D +M+ ++ V ++ P Sbjct: 64 ---------GRTPGNIAAIRPMKDGVIAD--FFVTEKMLQHFIKQVHSNSFMRPSP---- 108 Query: 115 RAVVTIPVDMNGERRRDLREAFRLAGVTIDQFVHEPLAALYGHLRDLPDFASEIRRLDRQ 174 R +V +PV RR +RE+ + AG + EP+AA G LP + Sbjct: 109 RVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGA--GLPVSEATGS----- 161 Query: 175 YMLVFDWGGGTLDLTLCQLVDGYLVQITNHGCSHLGGDVIDESIMHEVVRRH 226 +V D GGGT ++ + L + +GGD DE+I++ V R + Sbjct: 162 --MVVDIGGGTTEVAVISLNG-----VVYSSSVRIGGDRFDEAIINYVRRNY 206
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 113 bits (284), Expect = 1e-36 Identities = 34/89 (38%), Positives = 54/89 (60%) Query: 5 TKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGR 64 K ++ ++ E L K+++ V+ F + L E+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 65 NPKTGEEIPITARRVVTFRPGQKLKARVE 93 NP+TGEEI I A +V F+ G+ LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 103 bits (259), Expect = 1e-26 Identities = 85/362 (23%), Positives = 148/362 (40%), Gaps = 13/362 (3%) Query: 15 RNLAVCLFGAFTTVFAMTLILPFLPVYIGQLGVSGHAAIVQWSGIAYAATFVTAGLVAPL 74 R L V L + LI+P LP + L S GI A + AP+ Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVT--AHYGILLALYALMQFACAPV 62 Query: 75 WGMLGDRYGRKPMLVRASLGMAITMLLMGLASDIWQFIGLRLLAGIAGGYSSGATILVAV 134 G L DR+GR+P+L+ + G A+ +M A +W R++AGI G + A +A Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD 122 Query: 135 QAPKSRSAWALGLLSSGVMAGNLLGPLVGGFLPPLIGIRATFWGASGLIFIAFVFTTFML 194 A G +S+ G + GP++GG + A F+ A+ L + F+ F+L Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 195 RETA---RPSVPAVEEPPKVGWSNMPNKAVILAMLATGLLLMIANMSVEPIITVYIETLL 251 E+ R + P + V+ A++A ++ + + ++ E Sbjct: 182 PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 252 EDSRRVTSVAGLAMSA-AALGSIISATYLGKVADRIGYGVIMIAALSVAAVLLIPQAFVY 310 + G++++A L S+ A G VA R+G ++ + I AF Sbjct: 242 HWD---ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 311 AGWQLIALRFLMGMALGGL-LPCMAAVIRHSVPERFVGSAMGWSLSAQFAGQVIGPVIGG 369 GW + L +A GG+ +P + A++ V E G G + ++GP++ Sbjct: 299 RGWMAFPIMVL--LASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356 Query: 370 FV 371 + Sbjct: 357 AI 358 Score = 51.4 bits (123), Expect = 3e-09 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 4/177 (2%) Query: 217 PNKAVILAMLATGLLLMIANMSVEPIITVYIETLLEDSRRVTSVAGLAMSAAALGSIISA 276 PN+ +I+ + L + + + P++ + L+ S VT+ G+ ++ AL A Sbjct: 3 PNRPLIVILSTVALDAVGIGL-IMPVLPGLLRDLVH-SNDVTAHYGILLALYALMQFACA 60 Query: 277 TYLGKVADRIGYGVIMIAALSVAAVLLIPQAFVYAGWQLIALRFLMGMALGGLLPCMAAV 336 LG ++DR G +++ +L+ AAV A W L R + G+ G A Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAY 119 Query: 337 IRHSVPERFVGSAMGWSLSAQFAGQVIGPVIGGFVGGQFGMRSVFLVTSLLMLAGAL 393 I G+ + G V GPV+GG + G F + F + L L Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFL 175
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 51.6 bits (123), Expect = 3e-10 Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 6/189 (3%) Query: 9 PFNSALLLMDFQEFVLNNFVP-APRAAEVVARTSRFLSRVRQTDMLVVHVTVGCPPDGPP 67 P + LL+ D Q + ++ F A E+ A + ++ Q + VV+ P P Sbjct: 28 PNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQ--PGSQNP 85 Query: 68 MDRRNRLFRELRESGLIEPGSPGLAITAALQPIESEPVITKSRVGAFTGTELDELLWAHD 127 DR L + GL G I L P + + V+TK R AF T L E++ Sbjct: 86 DDRA--LLTDFWGPGLNS-GPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEG 142 Query: 128 IETLLIAGATTSGVVLTTVRQAFDLDYQLVVLRDGCVDGDAELHDYLMARVISDHATITE 187 + L+I G L T +AF D + + D D E H + A Sbjct: 143 RDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCAFTVM 202 Query: 188 IDEVAKTLR 196 D + L+ Sbjct: 203 TDSLLDQLQ 211
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.003 Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 103 DEINRATPKSQSALLEAMEEGQVTIEGATRPLPEPFFVIATQN 145 DEI +Q+ LL +++G+ T G P+ ++A N Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.6 bits (243), Expect = 5e-25 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Query: 7 RILFVDDEERILRSLAMQF-RRHYEVLTESDPRRALERLKTERIQVLVSDQRMPQMSGAE 65 IL DD+ I L R Y+V S+ + ++V+D MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 LLAQARERYPETLRILLTGYSDLDAAVDALNDGGIFRYLTKPWNPQEMAFTLRQAAEIAS 125 LL + ++ P+ ++++ + A+ A + G + YL KP++ E+ + +A Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKAS-EKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 126 RQGLPAPPAATLAAPL 141 R+ + PL Sbjct: 124 RRPSKLEDDSQDGMPL 139 Score = 54.8 bits (132), Expect = 1e-10 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 5/139 (3%) Query: 142 SVLLLDDDPETLDCVGAFCHAGGHRLLRARNLAEALVWLNTEPVEVLVSDLKLAGEHTAP 201 ++L+ DDD + G+ + N A W+ +++V+D+ + E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 202 LLKSLAQAHPRLLSLVVTPFRDTQALLELINQAQIFRYLPKPIRRGLFEKGLKAAAEQAL 261 LL + +A P L LV++ ++ + + YLPKP L +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKAS-EKGAYDYLPKP----FDLTELIGIIGRAL 119 Query: 262 LWRGRSLPEVDRLAEVPRD 280 R +++ ++ Sbjct: 120 AEPKRRPSKLEDDSQDGMP 138
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 2e-04 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%) Query: 579 AGASAQVGASSGTLK-APMDGAIV-EVLVGEGERVGKGQLLLVLEAMKMEHPLKAGVDGV 636 A A+ ++ S + + P++ +IV E++V EGE V KG +LL L A+ E A Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAE----ADTLKT 139 Query: 637 VRRVQVGRGEQVRNRQVLVEVEADA 661 + R EQ R + + +E + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNK 164
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.3 bits (200), Expect = 3e-20 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 9/191 (4%) Query: 3 LHGKTLFITGASRGIGREIALRAARDGANLVIAAKSAEPHPKLEGTIFSVAAEVEAAGGQ 62 + GK FITGA++GIG +A A GA++ + E K+ ++ + A EA Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA---- 61 Query: 63 ALPLQLDVRDEQAVAAAMARAAERFGGIDALVNNAGAIRLVGVEKLEPKRFDLMYQINTR 122 DVRD A+ AR G ID LVN AG +R + L + ++ + +N+ Sbjct: 62 ---FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST 118 Query: 123 AVLVCSQAALPYLRRSANGHILSLSPPINLAGRWFAQHGPYTVTKYGMSMLTLGMHEEFG 182 V S++ Y+ +G I+++ N AG Y +K M T + E Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGS--NPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 183 KYAISVNALWP 193 +Y I N + P Sbjct: 177 EYNIRCNIVSP 187
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 3e-04 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 9/100 (9%) Query: 4 APKTASKKVAPAAEQVAEPKPPAKPKPAAAPPKPASRPVAKDKPAPAKRASTARLDPEVR 63 PK S+ V+P EQ +P A+P P P ++ V Sbjct: 1122 VPKVTSQ-VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE 1180 Query: 64 KPLPSAKLDLRLPK-------ELVQKMAPPGTEETH-KPK 95 +P+ + P E+ KPK Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 1e-04 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 8/120 (6%) Query: 112 AAAAKRAMRAPAAPAPLSSEMSEP--PALLASYASSGEAPQLMAEAAPAAPAALADRPPA 169 + + P + + P P+ A EAP + APA P+ + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP--VPPPAPATPSETTETVAE 1042 Query: 170 QAAQQAK---VQAALAGDFVAQARGKAVAVKPEVLDEALGAVLALREQGKTEQAATQLAE 226 + Q++K A + AQ R A K V +A + +T++ T + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA-QSGSETKETQTTETK 1101
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 50.2 bits (120), Expect = 1e-09 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 11/157 (7%) Query: 10 LVIADSFPVMQWALQRYLSEECGRQVLAVVGDSDSLVERLADLPPESILITELGLPGQRS 69 +++AD ++ L + LS G V + +A +++T++ +P Sbjct: 6 ILVADDDAAIRTVLNQALSRA-GYDVRITSNAATLW-RWIAAGDG-DLVVTDVVMPD--- 59 Query: 70 RDGIHLVEWLTRHCPQMKVMVYSVFSAPLLAKAVLRSGASAYISKRSPLETLKAALECMA 129 + L+ + + P + V+V S + + A GA Y+ K L L + A Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG-RA 118 Query: 130 LGQTFLDPG-LHPQRHTGKPL---SPTEVDILRRLAR 162 L + P L G PL S +I R LAR Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 102 bits (255), Expect = 2e-27 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 11/126 (8%) Query: 155 DVLFDFNRAELKPAANRTALKLVQFL-QLNPRRV-IRIEGYTDSVGDRQANLDLSRERAQ 212 DVLF+FN+A LKP +L L L+P+ + + GYTD +G N LS RAQ Sbjct: 220 DVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQ 279 Query: 213 AVADVLADLGVDPARMQVVGYGEAFPVTDNASNRGR---------AQNRRVEIVFSNDKG 263 +V D L G+ ++ G GE+ PVT N + + A +RRVEI K Sbjct: 280 SVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKD 339 Query: 264 QLSAPR 269 ++ P+ Sbjct: 340 VVTQPQ 345
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 38.4 bits (89), Expect = 2e-05 Identities = 49/266 (18%), Positives = 96/266 (36%), Gaps = 43/266 (16%) Query: 43 PSRAVSHDINLTEMMVALGLQTRMVGYTGISGW--WKNADPGLIAALKPLPELV-----A 95 P+R V+ + E+++ALG+ G + W + +P PLP+ V Sbjct: 35 PNRIVALEWLPVELLLALGIVP--YGVADTINYRLWVS-EP-------PLPDSVIDVGLR 84 Query: 96 RYPTAETLLDVDADFFFAGWGYGMRVGGDLTPASLEPLG-VKVYELSESCAQIGEPRRAS 154 P E L ++ F GYG +P L + + + S+ + R++ Sbjct: 85 TEPNLELLTEMKPSFMVWSAGYGP------SPEMLARIAPGRGFNFSDGKQPLAMARKS- 137 Query: 155 LDELYRDLRNLGRIFDVEPRAERLVASLQARIERARAGIPANAEAPRVF--LYDSGEDRP 212 L + + +++ AE +A + I + P + L D Sbjct: 138 -------LTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLV 190 Query: 213 FTSGRLGMPQALIEAAGGRSVTDDVAASW--TQVNWESVVA-RDPQVIVIVDYGETSAAQ 269 F + Q +++ G + W T V+ + + A +D V+ D+ + Sbjct: 191 FGPN--SLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCF-DHDNSKDMD 247 Query: 270 KQRFLEENPALRSLTAIRERRFIVLP 295 L P +++ +R RF +P Sbjct: 248 A---LMATPLWQAMPFVRAGRFQRVP 270
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 27.1 bits (60), Expect = 0.047 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 8/53 (15%) Query: 74 ADHLSAAIFLQRELGGCLAIGARITQVQAKFSGLFNLGEAFPVDGRQFEHLFE 126 L+ A+ G L + + SGL++ ++ P + L Sbjct: 66 QCLLAGALNPLLNAGPGLGLDEK--------SGLYHAYQSIPREKLSVPTLKR 110
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.034 Identities = 6/16 (37%), Positives = 8/16 (50%) Query: 258 FRRAYGMTPAAYRRQC 273 +R AYG + RQ Sbjct: 672 YRGAYGRYVQDHPRQV 687
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.9 bits (173), Expect = 1e-16 Identities = 71/260 (27%), Positives = 118/260 (45%), Gaps = 17/260 (6%) Query: 6 IKGKTVLVTGGAKNLGGLIARDLAAHGAKAIAIHYNSAASKADADATVAALQAAGAKAVA 65 I+GK +TG A+ +G +AR LA+ GA A+ YN + V++L+A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL----EKVVSSLKAEARHAEA 61 Query: 66 LQGDLTSAAAMEKLFADAIAAVGKPDIAINTVGKVLKKPFTEISEAEYDEMSAVNAKSAF 125 D+ +AA++++ A +G DI +N G + +S+ E++ +VN+ F Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 126 FFLREAGKHVND--NGKICTLVTSLLGAYTPYYAAYAGTKAPVEHFTRAASKEFGARGIS 183 R K++ D +G I T+ ++ G AAYA +KA FT+ E I Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 184 VTAVGPGPMDTPFFYPAEGADAVAYHKTAAALSPFSRTGL--------TDIEDVVPFIRH 235 V PG +T + + A +L F +TG+ +DI D V F+ Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETF-KTGIPLKKLAKPSDIADAVLFL-- 238 Query: 236 LVSEGWWITGQTILINGGYT 255 + + IT + ++GG T Sbjct: 239 VSGQAGHITMHNLCVDGGAT 258
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 3e-12 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 3/174 (1%) Query: 1 MATRGRPRAFD-RDTALQRAMDVFWVRGYEGASLAALTEAMEIRPPSLYAAFGSKEGLFR 59 MA + + A + R L A+ +F +G SL + +A + ++Y F K LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 60 EALAHYLGQHGRYRRDVLDGAPSA-REGVAELLRETVARFCSDEFPRGCLVVL-AALTGT 117 E G + P + E+L + ++E R + ++ Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 PESEAVRDALSAERGESIRLFRERMRRGIADGDLAADTDVEELATFYATVLFGL 171 E V+ A ES + ++ I L AD A + GL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.7 bits (98), Expect = 3e-06 Identities = 54/261 (20%), Positives = 88/261 (33%), Gaps = 19/261 (7%) Query: 1 MLLPILLLAAAGFTILTTEFVIVGLLPALAADLQVSVAQA---GLLVSLFAFSVAAFGPF 57 ++L + L A G + I+ +LP L DL S G+L++L+A A P Sbjct: 9 VILSTVALDAVGIGL------IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPV 62 Query: 58 LTAALAGVERKRLFVACLLLFAAANALAAVAGDIWTMAVARFVPALALPVFWAMASETAA 117 L A R+ + + L A A+ A A +W + + R V + A+A A Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIA 121 Query: 118 HLAGPSREGRAVALVFFGIVAATVLGIPIGTLIADAWGWRLAFAALAALALAKALLLAAW 177 + R + V G +G L+ + F A AAL L Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFL 180 Query: 178 LPRIPGRPGVSLRSQASVLRQPLVLGHLLLSLLVFTGMF--------TPYTYLADILQRL 229 LP LR +A + + +F P + Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 230 AGFSGSLVGWTLMGFGAVGLL 250 + + +G +L FG + L Sbjct: 241 FHWDATTIGISLAAFGILHSL 261
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 50.6 bits (121), Expect = 4e-09 Identities = 60/285 (21%), Positives = 98/285 (34%), Gaps = 24/285 (8%) Query: 34 VLIEGPRGMAKSTLARGVAELLP--AGEFVTLPLGASEERIVGSLDLDAALGE--GRARF 89 ++I G G K +AR + + G FV + + A ++ S G G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 90 SPGVLAKADGGVLYVDEVNLLPDHLVDLLLDVAASGVNLVERDGISHRHPARFVLIGTMN 149 S G +A+GG L++DE+ +P LL V G G + ++ N Sbjct: 223 STGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRIVAATN 280 Query: 150 P------EEGELRPQLLDRFGLNVRLDTQPPPAERAEIIRRRLAFDADPQAFVERWEGQQ 203 +G R L R LNV PP +RAE I L + FV++ E + Sbjct: 281 KDLKQSINQGLFREDLYYR--LNVVPLRLPPLRDRAEDI-PDLV-----RHFVQQAEKEG 332 Query: 204 DTLRRRCAEARRRLARI--PLDDAALDSIARRCFEAAVDGLRADLVWLRAARAHAAWRGG 261 ++R EA + P + L+++ RR + + R+ Sbjct: 333 LDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPI 392 Query: 262 ERIEAEDIDAVEHFALLHRRRQSNPPSSAANPPPPPAAAPVALPE 306 E+ A + +S + PP L E Sbjct: 393 EK--AAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAE 435
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 27.8 bits (62), Expect = 0.045 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 19 VKADNSGVDLANVKM---SMNPFCEIAVEEAVRLKEKGVATEIVAVSVGPTAAQEQLRTA 75 VKA+ G + + + + F + +EEA+ L+E+G I+ + G AQ+ Sbjct: 34 VKANAYGHGIERIWSAIGATDGFALLNLEEAITLRERGWKGPIL-MLEGFFHAQD---LE 89 Query: 76 LALGADRAILVESNDELNSLAVAKL 100 + V SN +L +L A+L Sbjct: 90 IYDQHRLTTCVHSNWQLKALQNARL 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 59.7 bits (144), Expect = 5e-11 Identities = 56/316 (17%), Positives = 96/316 (30%), Gaps = 41/316 (12%) Query: 760 RRSRGQRRRSNRRERQREVSGELEGSEATDNA-----AAPLNTVAAAAAAGIAVA--SEA 812 R G+ N +R + + +N + P N A V + A Sbjct: 972 RNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA 1031 Query: 813 VEANVEQAPATTSEAASETTASDETDASTSEAVETQDA-----DSEANT---------GE 858 + + A S+ S+T +E DA+ + A + A + +ANT E Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 859 TADIEAPVTVSVVRDEADQSTLLVAQATEEAPFASESVESREDAESAVQPATEAAEEVAA 918 T + + T E ++ + + T+E P + V +++ VQP E A E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE--- 1148 Query: 919 PVPVEAAAPSEPATTEEPTPAIAAVPANATGRALNDPREKRRLQREAERLAR--EAAAAA 976 P + ++ T A PA T + P + + E A Sbjct: 1149 NDPTVNI---KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205 Query: 977 EAAAQAAPAVEEIPAVASEEA----SAQEEPAA---PQAEEIAQADVPSQT-----DEAQ 1024 P + EPA +A D+ S +A+ Sbjct: 1206 TTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDAR 1265 Query: 1025 EAVQAEPEASGKDAAD 1040 Q GK + Sbjct: 1266 AKAQFVALNVGKAVSQ 1281 Score = 57.4 bits (138), Expect = 3e-10 Identities = 51/349 (14%), Positives = 104/349 (29%), Gaps = 36/349 (10%) Query: 508 EAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPMPEPSLFQGLVKSLVGLFAG 567 + +++ + +V + + EAPV P P PS V A Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVD--EAPVPPPAP-ATPSETTETV-------AE 1042 Query: 568 KDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDGRDGNRRDEERKPREERAERQPRE 627 + +K E ++ A T Q+ ++ + N + +E + +E Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 628 ERAERPNREERSERRREERAERPAREERQPREGREERAERTPREERQPREGREGREERSE 687 + + E + + + + P++ + E + R+ +E +S+ Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQV-SPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 688 RRREERAERPAREERQPREGREERAERPAREERQPREDRQARDAAALEAEALPNDESLEQ 747 E+PA+E E + +E Sbjct: 1162 TNTTADTEQPAKETS--------SNVEQPVTESTTVN---------------TGNSVVEN 1198 Query: 748 DEQDDTDGERPRRRSRGQRRRSNRRERQ-REVSGELEGSEATDNAAAPLNTVAAAAAAGI 806 E +P S + NR R R V +E + + N + + + Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258 Query: 807 AVASEAVEANVEQAPATTSEAASETTASDETDASTSEAVETQDADSEAN 855 AV S+A A + +A S+ + E + V + N Sbjct: 1259 AVLSDAR-AKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKN 1306 Score = 53.5 bits (128), Expect = 4e-09 Identities = 45/253 (17%), Positives = 77/253 (30%), Gaps = 35/253 (13%) Query: 838 DASTSEAVETQDADSEANTGETADIEAP------VTVSVVRDEADQSTLLVAQATEEAPF 891 A+ + ++ D E N E +A + VS+V + D + Sbjct: 919 SATGNFTLQVADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRY 978 Query: 892 A--SESVESREDAESAVQPATEAAEEVAAP-VPVEAAAPSEPATTEEPTPAIAAVPANAT 948 + VE R T + P VP + P PA A Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 949 GRALNDPREKRRLQR------EAERLAREAAAAAEAAAQAAPAVEEIPAVASEEASAQ-- 1000 A N +E + +++ E RE A A++ +A E+ SE Q Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 1001 --EEPAAPQAEEIAQADVPSQTDEAQEA--------------VQAEPEASGKDA--ADTE 1042 +E A + EE A+ + + + QAEP Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 1043 HAKKAEESETSRP 1055 ++ ++T +P Sbjct: 1159 QSQTNTTADTEQP 1171 Score = 50.1 bits (119), Expect = 5e-08 Identities = 53/338 (15%), Positives = 95/338 (28%), Gaps = 62/338 (18%) Query: 616 PREERAERQPREERAERPNREERSERRREERAERPAREERQPREGREERAERTPREERQP 675 P E+ + PN + E AR + P A TP E + Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVP---PPAPATPSETTET 1039 Query: 676 REGREGREERSERRREERAERPAREERQPREGREERAERPAREERQPREDRQARDAAALE 735 +E ++ + E+ A + R+ + E ++ A + Q + A Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAK--EAKSNVKA--------NTQTNEVAQSG 1089 Query: 736 AEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELEGSEATDNAAAPL 795 +E E+ + ++ E+ + + + +VS + E SE A P Sbjct: 1090 SET---KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 796 NTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDASTSEAVETQDADSEAN 855 + A+ EQ TS + T + + VE + + A Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 856 TGETADIEAPVTVSVVRDEADQSTLLVAQATEEAPFASESVESREDAESAVQPATEAAEE 915 T T + E+ S ++R P Sbjct: 1207 TQPTVNSES----------------------------SNKPKNRHRRSVRSVPHNV---- 1234 Query: 916 VAAPVPVEAAAPSEPATTEEPTPAIAAVPANATGRALN 953 EPATT + A+ + T N Sbjct: 1235 -------------EPATTSSNDRSTVAL-CDLTSTNTN 1258 Score = 44.3 bits (104), Expect = 3e-06 Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 25/237 (10%) Query: 427 EALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLR 486 A T E A Q + + +++A + T EV + Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 487 DDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAVKT--VAPQQPAPQHTEAPVEP 544 ++ E +T E ATVE EE V + +T QE T V+P+Q + + EP Sbjct: 1090 SETKETQTTETK-ETATVEKEEKAKVETEKT---QEVPKVTSQVSPKQEQSETVQPQAEP 1145 Query: 545 AKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAERQTRQDERRNGRQQNRRRDG 604 A +P+ K+ ++T+ A Q ++ N Q Sbjct: 1146 A-RENDPT------------VNIKE----PQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 605 RDGNRRDEERKPREERAERQP--REERAERPNREERSERRREERAERPAREERQPRE 659 + E A QP E + +P R R PA R Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 28.8 bits (64), Expect = 0.022 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 22/128 (17%) Query: 15 HPALALLRPLEALYRRVANGRRADFLSGRKPAYRAPLPVLVVGNITVGGTGKTPM----I 70 L P R R+A+ L+GR A A L + V + G + P+ + Sbjct: 26 REHDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHA-LREVGVRTVPGMGDKRQPLWPDGL 84 Query: 71 LWMIEHCRARGLRVGVISRGYGARPPTTPWRVRAEQDAAEAGDEPLMIVRRSGVPLMIDP 130 I HC L V + + G + E+ ++ L P +ID Sbjct: 85 FGSISHCATTALAV-ISRQRIG---------IDIEKIMSQHTATEL-------APSIIDS 127 Query: 131 DRPRALQA 138 D + LQA Sbjct: 128 DERQILQA 135
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.9 bits (168), Expect = 2e-16 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 4 SETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGP 63 ET + ILD A +LF+++G + TSL I AGV A+ +HF K L ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 64 FCASLEKELDRRQAKPEAQ-HATLEDLLHLLVS 95 + + P + L +L V+ Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVT 102
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 27.4 bits (61), Expect = 0.019 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 17 DPVMKRAAALATSNQARLSVVHVV-EPMAMAFGGDVPMD 54 V +RA + A V ++ EPMA A G +P+ Sbjct: 119 TQVERRAIRESAQG-AGAREVFLIEEPMAAAIGAGLPVS 156
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.003 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 575 KLQRELEALPGQIDAVEAELAGVQETIAQ--QDFYLRPQDEQRETLARLDALQQELDALL 632 + EL Q++ +E+E+ +E Q F D+ R+T + L EL Sbjct: 263 EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNE 322 Query: 633 ER 634 ER Sbjct: 323 ER 324
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.022 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 23 QGKPPPSISLDETVLAQPLPEPPKPVEVV---AVPEPLALPAQLKPLPELDEAPVAPEPA 79 +PPP ++ +P+PEPPK VV P+P P +K + + E Sbjct: 65 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR 124 Query: 80 DEKVRVSRANAEARIAPTREG 100 + A A + Sbjct: 125 PASPFENTAPARPTSSTATAA 145
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 32.0 bits (72), Expect = 0.005 Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 11/118 (9%) Query: 272 GAGAMAGAAVGAVGTGVAIGAAVTGVGGAVMAGARMAPAAAKLAGAG-----ARAATSAA 326 GA +A A+G G + + A M PA K A G A + Sbjct: 234 GALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKFAVIGGLGSVAGFEKNTR 293 Query: 327 GSARSAFQAG-SAAAGGGAKGAAAGLGNVAKTGAQAAGRSVTSGASAVGQKVADSFRA 383 + Q +AA A A VAK A G +AV ADS++ Sbjct: 294 EAVDRWIQENPNAAETVEAVFNVAAAAKVAKLAKAA-----KPGKAAVSGDFADSYKK 346
>PF05043#Transcriptional activator Length = 493 Score = 35.3 bits (81), Expect = 2e-04 Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 32/213 (15%) Query: 1 MKNIKSMD-LNLLKALDALLDER---NVTRAAARLGLTQPALSGMLTRLRESFGDPLFAR 56 M+++ S L+ L+ L + + + + A L T+ A+ L+ ++ +F D +F Sbjct: 1 MRDLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHS 60 Query: 57 SQRGIVPTQ-RALDLGMPVKQVLAEIDALLQPPSFNPATAQLTFSIAATDYALRAVAVP- 114 S GI D+ M + L F ++ Sbjct: 61 STNGIRIINTDDSDIEMVYHHFFKHSTHF----------SILEFIFFNEGCQAESICKEF 110 Query: 115 FLSALKRHAPRVRVSLVPVESGQLQNQLERGQIDLALLTPEITPPNLHAR----ELFKEH 170 ++S R+ + V ++ Q + +++L +I R + F E Sbjct: 111 YIS--SSSLYRIISQINKV----IKRQFQ---FEVSLTPVQIIGNERDIRYFFAQYFSEK 161 Query: 171 YVCVLREDHPAAMGRKLTVKQFCALDHALVSYD 203 Y + P + Q L + S+ Sbjct: 162 YYFLE---WPFENFSSEPLSQLLELVYKETSFP 191
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.8 bits (103), Expect = 5e-08 Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 8/156 (5%) Query: 2 TLDAVVVRAGLSKGAFLYHFKTKRDLFVTLIDEMIRAFDAVQANHERRFAGDPDPWLSSQ 61 +L + AG+++GA +HFK K DLF + + ++ ++ +F GDP L Sbjct: 33 SLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREI 92 Query: 62 VEAMPD----DEMQKMGAALLAAAAEDPTLLDPLREWYRVQYERVRRSPRGTETAAL--- 114 + + + +E +++ ++ E + +++ R T + Sbjct: 93 LIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAK 152 Query: 115 -IMLALDGALFADLLGLPILAPAERRHFFRALQDLA 149 + L A ++ I E F DL Sbjct: 153 MLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLK 188
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 9e-06 Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 10/141 (7%) Query: 103 LDAQPDRLRVTQAQASLAAAEAGLMDRRVQTDQQRRLLESEVISPAAFESAKAQLAVAEG 162 L+ + + + + + ++ +L+ + + + + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 163 QARTAKAALGLAERAQRGTMIVAPFDGVVAEKLALAFTD---IAAGAPVFQVDGVRSGTE 219 AK E Q+ ++I AP V + T+ + + + E Sbjct: 315 TLELAKN-----EERQQASVIRAPVSVKVQQ--LKVHTEGGVVTTAETLMVIVPEDDTLE 367 Query: 220 IIANASTTQAPHIDVGQRAEL 240 + A I+VGQ A + Sbjct: 368 VTALVQNKDIGFINVGQNAII 388 Score = 40.2 bits (94), Expect = 9e-06 Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 2/103 (1%) Query: 79 TGGRIAKLNVDVGERFSRGQVLAELDAQPDRLRVTQAQASLAAAEAGLMDRRVQTDQQRR 138 + ++ V GE +G VL +L A + Q+SL A ++ + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 139 --LLESEVISPAAFESAKAQLAVAEGQARTAKAALGLAERAQR 179 L E ++ F++ + + + + ++ Q+ Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 470 bits (1210), Expect = e-151 Identities = 230/1055 (21%), Positives = 437/1055 (41%), Gaps = 71/1055 (6%) Query: 3 ITEMALRASRLTYFVALIIFVAGIATFLNFPSQEEPTVTVRDAMVTALNPGLPAERVEQL 62 + +R + +A+I+ +AG L P + PT+ V+A PG A+ V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 IARPIEERLRELAEVKRVTST-VRAGSAMIQVTIWDRYTDLAPIWQRVRAKVADSKDALP 121 + + IE+ + + + ++ST AGS I +T + TD +V+ K+ + LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLT-FQSGTDPDIAQVQVQNKLQLATPLLP 119 Query: 122 ---QSTMGPFVDEDFGRVAVASIAVTAPGYSMSEMRV-ALKQMRDRLYTVPGIERITFYG 177 Q + VA PG + ++ ++D L + G+ + +G Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 178 LQEE-RVYLEFDRPRLARLELTPQGVIDQLVKQNVVASGGQIVVG------GINATLAVS 230 Q R++L+ D L + +LTP VI+QL QN + GQ+ +NA++ Sbjct: 180 AQYAMRIWLDADL--LNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQ 237 Query: 231 GEVRDAPSLRAMPIALPRPQSSTAPVPTIALGELAQVSVRPADPPESAAIYKGQPAVVMA 290 ++ + + R S + V L ++A+V + A G+PA + Sbjct: 238 TRFKNPEEFGKVTL---RVNSDGSVVR---LKDVARV-ELGGENYNVIARINGKPAAGLG 290 Query: 291 VSMASGQNVEQFGKALKARVADQEKLLPAGFDLSYVTFQADVVKHEMGKMNHVMMETIIV 350 + +A+G N KA+KA++A+ + P G + Y V+ + ++ + E I++ Sbjct: 291 IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML 350 Query: 351 VLGVVVLFLG-WRTGIIVGMIVPLTILSALIVMRAMNIELQNVSMGAIIIALGLLVDNGI 409 V V+ LFL R +I + VP+ +L ++ A + ++M +++A+GLLVD+ I Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 410 VIAEDIERRLA-GGEDRKHACLEAGRTLAIPLLTSSLVIVIVFSPFFFGQNATSEYLHNL 468 V+ E++ER + K A ++ + L+ ++V+ VF P F +T Sbjct: 411 VVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 469 VVVLALTLFASWLLCLTVTPLLCYHFAKP----HHKQEQG--DAYDTRFYR---GYRRVL 519 + + + S L+ L +TP LC KP HH+ + G ++T F Y + Sbjct: 471 SITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSV 530 Query: 520 EWVLHHKAVYVASMIAALAIALYGFTTLPYDFMPKSDRLQFQIPVQLAPGTDSRETLARV 579 +L Y+ +A + F LP F+P+ D+ F +QL G T + Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 580 KQISGWLGDTNI-NPEVSDHIGYVADGGPRFILSLNPPLPASNIAYFVVTLKPKSD---- 634 Q++ + N E + + G A N V+LKP + Sbjct: 591 DQVTDYYLKNEKANVESVFTVNGFSFSGQ-----------AQNAGMAFVSLKPWEERNGD 639 Query: 635 ---IDAVLARTRSYFAQAHGDVRA--EPKRFSLGATESGTAIYRV--SGPDEEVLLGAAS 687 +AV+ R + + T +G + +G + L A + Sbjct: 640 ENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARN 699 Query: 688 KIEAALRKLPGT-INVKNDWDTRVGRIDVRVDQDRARRAGVTTEDIAGGLDVRYSGRSIS 746 ++ + P + ++V+ + + + VDQ++A+ GV+ DI + G ++ Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 747 VIRDGDTSVPIVLRSIVSERRSTADVGATLIYPTNGGPAVTLAQVADVSLASEPSVIQRR 806 D + +++ R DV + + G V + ++R Sbjct: 760 DFIDRGRVKKLYVQADAKFRMLPEDVDKLYV-RSANGEMVPFSAFTTSHWVYGSPRLERY 818 Query: 807 NLIRTITVQGQNT----SYTAQEIINRLAPSVAALDLPAGYSVELGGEIEEAAESNAALS 862 N + ++ +QG+ S A ++ LA LPAG + G + S Sbjct: 819 NGLPSMEIQGEAAPGTSSGDAMALMENLAS-----KLPAGIGYDWTGMSYQERLSGNQAP 873 Query: 863 TYMPLAFLAMLMLFVWQFNSFRKLGVILATIPFTLIGVVLALKLTGTPFSFMATFGVLAL 922 + ++F+ + + + S+ ++ +P ++GV+LA L G+L Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 923 FGIIVNNAVLLLERIDQ-GLAEGLPRHEALVGAAIQRLRPIVMTKVTCISGLVPLMLFSG 981 G+ NA+L++E EG EA + A RLRPI+MT + I G++PL + +G Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 982 P---LWKGMAIAMIGGLALGTLVTLGLIPLLYEVL 1013 + I ++GG+ TL+ + +P+ + V+ Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028 Score = 79.5 bits (196), Expect = 4e-17 Identities = 99/526 (18%), Positives = 193/526 (36%), Gaps = 61/526 (11%) Query: 516 RRVLEWVLHHKAVYVASMIAALAIALYGFTTLPYDFMPKSDRLQFQIPVQLAPGTDSRET 575 R + WVL I + LP P + PG D++ Sbjct: 8 RPIFAWVL---------AIILMMAGALAILQLPVAQYPTIAPPAVSVSAN-YPGADAQTV 57 Query: 576 LARVKQISGWLGDTNINPEVS--DHIGYVADGGPRFILSLNPPLPASNIAYFVVTLKPKS 633 V Q+ I ++ D++ Y++ +T + + Sbjct: 58 QDTVTQV--------IEQNMNGIDNLMYMSSTSDSAGSV-----------TITLTFQSGT 98 Query: 634 DIDAVLARTRSYFAQAHG----DVRAE--PKRFSLGATESGTAIYRVSGPDEEVLLG--A 685 D D + ++ A +V+ + S + + + + Sbjct: 99 DPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYV 158 Query: 686 ASKIEAALRKLPGTINVKNDWDTRVGRIDVRVDQDRARRAGVTTEDIAGGLDVRYSGRSI 745 AS ++ L +L G +V+ RI + D D + +T D+ L V+ + Sbjct: 159 ASNVKDTLSRLNGVGDVQLFGAQYAMRIWL--DADLLNKYKLTPVDVINQLKVQNDQIAA 216 Query: 746 SVIRDGDTSVPI--VLRSIVSERR--STADVGATLIYPTNGGPAVTLAQVADVSLASEP- 800 + G ++P + SI+++ R + + G + + G V L VA V L E Sbjct: 217 GQL-GGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENY 275 Query: 801 SVIQRRNLIRTITVQ-----GQNTSYTAQEIINRLAPSVAALDLPAGYSVELGGEIEEAA 855 +VI R N + G N TA+ I +LA + P G V + Sbjct: 276 NVIARINGKPAAGLGIKLATGANALDTAKAIKAKLA-ELQP-FFPQGMKVLYPYDTTPFV 333 Query: 856 ES--NAALSTYMPLAFLAMLMLFVWQFNSFRKLGVILATIPFTLIGVVLALKLTGTPFSF 913 + + + T L L+++++ + R + +P L+G L G + Sbjct: 334 QLSIHEVVKTLFEAIMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT 392 Query: 914 MATFGVLALFGIIVNNAVLLLERIDQGLAE-GLPRHEALVGAAIQRLRPIVMTKVTCISG 972 + FG++ G++V++A++++E +++ + E LP EA + Q +V + + Sbjct: 393 LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAV 452 Query: 973 LVPLMLFSG---PLWKGMAIAMIGGLALGTLVTLGLIPLLYEVLFG 1015 +P+ F G +++ +I ++ +AL LV L L P L L Sbjct: 453 FIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.2 bits (68), Expect = 0.029 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 11/71 (15%) Query: 310 FQRAPRERRSPNKRDAQR-----IEKLQTKLHELAEAVDAALDDEDEEKADALQEEGERL 364 + + +R D Q+ I + K L + E D + GE L Sbjct: 289 YAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKC------EDKDIFKLYGELL 342 Query: 365 GEQLQALEDGL 375 + AL+ GL Sbjct: 343 TANIYALKKGL 353
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 104 bits (261), Expect = 3e-26 Identities = 85/402 (21%), Positives = 165/402 (41%), Gaps = 19/402 (4%) Query: 8 AFMAVLDIQITNSSLKDIQGALAATLEEGSWISTSYLVAEIIMIPMTAWLVQLLSARRLA 67 +F +VL+ + N SL DI +W++T++++ I + L L +RL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 68 VMISVGFLVSSLLCSFAWNLESMIVF-RAMQGFTGGALIPLAFTLALVKLPEHHRPKGMA 126 + + S++ + S+++ R +QG A L + +P+ +R K Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 127 LFAITATFAPSIGPTLGGWLTENFGWEYIFYINVPPGLLMIAGLLYGLEKKAPHWELLKS 186 L +GP +GG + W Y+ I + ++ + L+ L+K+ Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT-IITVPFLMKLLKKEVRIKGHF-- 199 Query: 187 TDYAGIVTLGIGLGCLQVFLEEGHRKDWLESQLIVSLGSVALFSLVLFVILQLSRPNPLI 246 D GI+ + +G+ +F + S LIVS + S ++FV +P + Sbjct: 200 -DIKGIILMSVGIVFFMLFT-----TSYSISFLIVS-----VLSFLIFVKHIRKVTDPFV 248 Query: 247 DLGILRNRNFGLASISSIGLGMGLYGSIYVLPLYLAQIQGYNAMQIGEVIMWMG-IPQLF 305 D G+ +N F + + + + G + ++P + + + +IG VI++ G + + Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 306 LIPLVPKLMRLVSPRLLCAAGFGLFGLASFFSGVLNPDFAGPQFNQIQLLRALG-QPMIM 364 + L+ P + G ++ + L F I ++ LG Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL--LETTSWFMTIIIVFVLGGLSFTK 366 Query: 365 VTISLIATAYLQPQDAGSASSLFNILRNLGGAIGIALLATLL 406 IS I ++ L+ Q+AG+ SL N L GIA++ LL Sbjct: 367 TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 57.1 bits (138), Expect = 8e-11 Identities = 46/292 (15%), Positives = 103/292 (35%), Gaps = 56/292 (19%) Query: 301 VMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELERRIKRESLSVNLLPIL 360 +VTGA G IG + ++++ V+ + ++Y S+ Q + + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP----GFQFHK 58 Query: 361 GSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNNVIGTLHAVQAAVQVGV 420 + + E + D+ + V+ + V N +N+ G L+ ++ + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 421 QNFVLIST---------------DKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDRK 465 Q+ + S+ D P ++ +TK+ E++ S Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS------------ 166 Query: 466 DVHHVNKTRFTMVRFGNVLGSSGS---VIPLFREQIKRGGPVTV-THPSITRYFMTIPEA 521 H+ T +RF V G G + F + + G + V + + R F I + Sbjct: 167 ---HLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDI 223 Query: 522 AQLVIQA----------GSMGQGGD--------VFVLDMGPPVKILELAEKM 555 A+ +I+ ++ G V+ + PV++++ + + Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQAL 275
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 66.0 bits (161), Expect = 3e-14 Identities = 67/356 (18%), Positives = 120/356 (33%), Gaps = 69/356 (19%) Query: 5 NVLVTGATGFIGAALVNSLCSSGQ-----------YKVWAGCRRRGGAWPRGVTP----L 49 LVTGA GFIG + L +G Y V R G L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 50 LLGELGSSVVWDAESAIDTVVHCAARVHV-MSETASDPLVEFRKANVQGT---LDLAREA 105 E + + + V R+ V S + +N+ G L+ R Sbjct: 62 ADREGMTDLFASGH--FERVFISPHRLAVRYSLENPHAYAD---SNLTGFLNILEGCRHN 116 Query: 106 VSRGVRRFIFISSIKVNGEGTEPGRPY-TADSPPNPVDPYGVSKREAEQALLDLAEETGL 164 ++ ++ SS V G + P+ T DS +PV Y +K+ E + GL Sbjct: 117 ---KIQHLLYASSSSVYGLNRKM--PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 165 EVVIIRPVLVYGPGVKAN--VQTMMRWLKRGVPLPL-GAIHNRRSLVSLDNLVDLIITCI 221 +R VYGP + + + + + G + + +R +D++ + II Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231 Query: 222 EHPA-----------------AVGQVFLVSDGEDLSTTELLRRMGRALGAPAR--LLPVP 262 + A +V+ + + + + ++ + ALG A+ +LP+ Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ 291 Query: 263 ASWIGAAAKVLNRQAFARRLCGSLQVDIMKTRQVLGWTPPVGVDQALEKTARSFLD 318 V + A D +V+G+TP V ++ + D Sbjct: 292 ------PGDV--LETSA---------DTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.8 bits (64), Expect = 0.034 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 15 MHMSEALVSAYPPARRLDRPLWLLRELLHRLPQVIGSYGSDVVILQRELLSTIPTLEFLT 74 + ++EA++SA A DR + ++L +P +G G + T L++L Sbjct: 696 VPLAEAILSACEDAEEADRIDIPVADVLGLVPTPVGEEGDEEGHEDASPQVTDEILDYLE 755 Query: 75 K--------APRILDVDDAIWLHRRGIAANSIARRVDHIVCG--NQYLADYFGQFGRPT 123 K R+ D+ + A + ++V +C + D GRP+ Sbjct: 756 KPATQLGAEGWRLADMVLSASREDLDAIAREVFQKVLGNMCEVIDHLGCDVVLLTGRPS 814
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 257 bits (659), Expect = 2e-86 Identities = 101/341 (29%), Positives = 159/341 (46%), Gaps = 30/341 (8%) Query: 19 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 78 L+TG AGFIG ++ + LL+ +VVG+DN + +L + R + + F+F + D+ Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQ--PGFQFHKIDL 61 Query: 79 RNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 136 + + + A + V +V S+ +P +N+ GFLN+L R K+Q Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 137 TYAASSSTYGDHPGLP-KVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNV 195 YA+SSS YG + +P +D++ P+S YA TK NEL A +S YG GLR+F V Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 196 FGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDA 255 +G P+ A K+T +M++G + + G+ RDF YI++ +A + A Sbjct: 182 YGPWGRPDMAL----FKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 256 RNQ----------------VYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFRE 299 Q VYNI L AL D L G+ + + Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDAL---GIEAKKN--MLPLQP 292 Query: 300 GDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFLK 340 GDV + AD +++G+ P+ V GV + WY F K Sbjct: 293 GDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 118 bits (297), Expect = 1e-38 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 2 TKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVG 61 K +LI + V +L+ KD A+ + +S LA G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAK-VAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGESVRLDGKFVPHFKPGKELRDRV 90 RNP+TGE +++ VP FK GK L+D V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 27.6 bits (61), Expect = 0.028 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 86 SFGKDVAFNIKPKQLLKTEPLVALNRIQVQLSSMYPEKGGYVLVDFSE 133 + DV FN K LK E AL+++ QLS++ P+ G V++ +++ Sbjct: 216 TLKSDVLFNFN-KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTD 262
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 30.4 bits (68), Expect = 9e-04 Identities = 13/45 (28%), Positives = 18/45 (40%) Query: 53 AAGFTGSLIVAEFDSLAAAQSWAEADPYRAAGVYAEVVVKPFKKV 97 G GS+ E ++ A W + +P A V A V KV Sbjct: 278 VIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.010 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 22 EEPAPAPIPAAQPSITQATAELERRLVETERQRDELVSRMRQENRQLREQ--------LQ 73 E P P P PA T+ AE ++ +T + ++ + +NR++ ++ Q Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 74 AAQAQRQPPLLTEEQT 89 + + E QT Sbjct: 1082 TNEVAQSGSETKETQT 1097
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 103 bits (258), Expect = 9e-28 Identities = 42/117 (35%), Positives = 63/117 (53%) Query: 4 LLLIDDDRELCELLGTWLVQEGFSVRASHDGAQARRALAEQTPDAVVLDVMLPDGSGLEL 63 +L+ DDD + +L L + G+ VR + + A R +A D VV DV++PD + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LKQLRGDHPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRT 120 L +++ PDLPVL++SA+ + I E GA DYL KP D EL + L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.026 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 17/100 (17%) Query: 341 VDNLLRNAVRFNPVGQPLEVRASSAGDYLRLSVRDHGPGIAAELQEQLGEPFFRAPNQSS 400 V+N +++ + P G + ++ + + L V + G +E Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE-------------- 309 Query: 401 PGHGLGLA-IARRAIERHGGHLRLG-NHPDGGFIATLSLP 438 G GL + R +G ++ + G A + +P Sbjct: 310 -STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.9 bits (194), Expect = 2e-19 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 7/186 (3%) Query: 6 MITGAGSGLGREIALRWARDGWRLALADVNEAGLAESLKLVREAGGDGFTQ---RCDVRD 62 ITGA G+G +A A G +A D N L K+V + DVRD Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL---EKVVSSLKAEARHAEAFPADVRD 68 Query: 63 YSQLTALAQSCEEKFGGIDVIVNNAGVASGGFFGELSLEDWDWQIAINLMGVVKGCKAFL 122 + + + E + G ID++VN AGV G LS E+W+ ++N GV ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 123 P-LLERSKGKIVNIASMAALMQGPAMSNYNVAKAGVVALSESLLVELALVEVGVHVVCPS 181 +++R G IV + S A + +M+ Y +KA V ++ L +ELA + ++V P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 182 FFQTNL 187 +T++ Sbjct: 189 STETDM 194
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 28.4 bits (63), Expect = 0.013 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Query: 75 AADRVFVKHGY--LPTAELVDHLRALRAERVLVCGIQADTCVLAAGFALFDAGLQPTLIG 132 D V K Y L++ +R +++++ GI A L F ++ +G Sbjct: 116 DDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVG 175 Query: 133 DLVLGSSLDRSGELGVRLWKHHFGQVVSLAEVL 165 D V SL++ ++ + V +L Sbjct: 176 DAVADFSLEKH-QMALEYAAGRCAFTVMTDSLL 207
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 115 bits (288), Expect = 6e-31 Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 4/209 (1%) Query: 319 DARSMSGKLVVVTGAGGGIGRSTLLSFAERGASLLAADLDLEAAERSAELARALGATAHV 378 +A+ + GK+ +TGA GIG + + A +GA + A D + E E+ +A A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 379 YQVDVGDTQAM-ETFAEWVRDTLGVPDVVVSNAGIGMAGPMLDTSPAEWERLLRVNLWSV 437 + DV D+ A+ E A R+ + D++V+ AG+ G + S EWE VN V Sbjct: 62 FPADVRDSAAIDEITARIEREMGPI-DILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 438 IDGCRLFGRQMIAANKPGHLVNVASGVAFAPSRNYPAYATSKAAVLMLSECLRAELAGRS 497 + R + M+ + G +V V S A P + AYA+SKAA +M ++CL ELA + Sbjct: 121 FNASRSVSKYMM-DRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 498 IGVTAVCPGFVDTGIVQATRFVGMDAERQ 526 I V PG +T + Q + + + Q Sbjct: 180 IRCNIVSPGSTETDM-QWSLWADENGAEQ 207
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.0 bits (189), Expect = 2e-18 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 4/188 (2%) Query: 11 QGRHVLITGASSGLGRETALHLAEQGFQVIAGVRRQEDGERLANACPS-GRISTLL-IDV 68 +G+ ITGA+ G+G A LA QG + A E E++ ++ + R + DV Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 69 TDEESIGRAAAQVAEKVGDTGLWGLVNNAGICISAPLECVSSDLLRRQLEVNLIGQLAVT 128 D +I A++ ++G + LVN AG+ + +S + VN G + Sbjct: 67 RDSAAIDEITARIEREMG--PIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 129 RAILPLLRRGGAARLVNVTSGLGSVAIPYLGAYSAAQFAKEGVSDALRRELAPMGIQVSV 188 R++ + + +V V S V + AY++++ A + L ELA I+ ++ Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 189 VSPGAIWT 196 VSPG+ T Sbjct: 185 VSPGSTET 192
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 68.3 bits (167), Expect = 9e-15 Identities = 27/208 (12%), Positives = 73/208 (35%), Gaps = 24/208 (11%) Query: 81 RLAVRQAELALEEAERTNRELDAAIASAKADLLAARSSAGELDSEARRTAQLVQRHHVS- 139 + + Q + +E + A + A + + + S + L+ + ++ Sbjct: 194 QFSTWQNQKYQKELNL--DKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 140 ------QQMHEQVSAQAQAARARVAAAQARIGELTARRGTAGED------------NLRL 181 + + + + + ++++ ++ I + + Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI 311 Query: 182 RQARNALAQARLQLQYSSVRADRAGTLSNLQL-TPGTYVPAGTPVAALV--DDRIDIVAD 238 LA+ + Q S +RA + + L++ T G V + +V DD +++ A Sbjct: 312 GLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTAL 371 Query: 239 FREKSLRYVRPGDRAAVVFDARPGEVFG 266 + K + ++ G A + +A P +G Sbjct: 372 VQNKDIGFINVGQNAIIKVEAFPYTRYG 399 Score = 67.9 bits (166), Expect = 1e-14 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 15/226 (6%) Query: 1 MTPDQRFARWVQVAI-AVFVLLFVYFLVADLWMPLTPQAQLT--RPVVRVAPRVSGQVAE 57 TP R R V I V+ F+ ++ + + T +LT + P + V E Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 58 VLVSNNGHVQPGEVLFRLDPEPFRLAVRQAELALEEAERTNRELDAAIASAKADLLAARS 117 ++V V+ G+VL +L + + +L +A S + + L Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 118 SAGELDSEARRTAQLVQRHHVSQQMHEQVSAQAQAARARVAAAQARIGELTARRGTAGED 177 E + ++++ + ++ Q + +A + AR Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 178 NLRLRQARNALAQAR------------LQLQYSSVRADRAGTLSNL 211 + + + + + +Y + S L Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQL 275
>PF07472#Fucose-binding lectin II Length = 245 Score = 149 bits (377), Expect = 1e-48 Identities = 61/113 (53%), Positives = 77/113 (68%), Gaps = 3/113 (2%) Query: 5 GVFTLPANTRFGVTAFANSSGTQTVNVLV--NNETAATFSGQSTNNAVIGTQVLNSGSSG 62 G+F LP N FGVTA NSS QT+ V V N + AATF G T +A + TQ++NSG G Sbjct: 134 GIFNLPPNIAFGVTALVNSSAQQTIEVYVDDNPKPAATFQGAGTQDANLNTQIVNSGK-G 192 Query: 63 KVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG 115 KV+V V+ NG+PS + S QV + + F LVGSEDGTD DYND + ++NWPLG Sbjct: 193 KVRVVVTANGKPSKIGSRQVDIFKKTYFGLVGSEDGTDGDYNDGIAILNWPLG 245
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.7 bits (90), Expect = 3e-05 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 21/177 (11%) Query: 31 LLQAHLSHRSALHSRFRFDPAAVMDCLRAEVLGQEPALQAVEDMLKVVRADIADPRRPLF 90 ++ L+ S+ D M ++G+ A+Q + +L + L Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMP-----LVGRSAAMQEIYRVLARL----MQTDLTL- 163 Query: 91 SALFLGPTGVGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAAALTGAPPG-YVGA-K 148 + G +G GK + RAL F ++M + ++ + L G G + GA Sbjct: 164 --MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQT 221 Query: 149 EGTTLLEQDKLDGSPGRPGIVLFDELEKASPEVVHALLNVLDNGLLRVASGERTYHF 205 T EQ +G G + DE+ + LL VL G G Sbjct: 222 RSTGRFEQ--AEG-----GTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRS 271
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 56.1 bits (135), Expect = 4e-12 Identities = 21/71 (29%), Positives = 33/71 (46%) Query: 151 RSAILEDMVVDRHARGQGVGRELIGRAVERARSWGCYKLALSSHQDRETAQRFYAALGFT 210 A++ED+ V + R +GVG L+ +A+E A+ L L + +A FYA F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 211 SHGVSLALHLG 221 V L+ Sbjct: 148 IGAVDTMLYSN 158
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 28.4 bits (63), Expect = 0.039 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 246 LGYRQSASFFMLLGIVLPFLIAVIALSEFIAELLPTEESVYLTMTFITLPLFYMAGYSWP 305 LGY Q S L ++ +A +L + L P+ + T + P+ +++G +P Sbjct: 139 LGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFP 198 Query: 306 EQAMPDWVRWLADAIPSTWAIRAIAEMNQMDLPLREVSDHALVLLGMAATYALLGTLLYQ 365 +P + A +P + +I I + + P+ +V H L L T L + Sbjct: 199 VDQLPIVFQTAARFLPLSHSIDLIRPI-MLGHPVVDVCQHVGALCIYIVIPFFLSTALLR 257 Query: 366 YR 367 R Sbjct: 258 RR 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 55.6 bits (134), Expect = 1e-10 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 17/161 (10%) Query: 41 IVSSKAKGRVQVLHVRRGDEVKQGDLLISLDSPELEAQLDALHAARNQVQAQLDESLHGT 100 + V+ + V+ G+ V++GD+L+ L + EA ++ +QA+L+++ + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSS--LLQARLEQTRYQI 155 Query: 101 REESIRALKASLAQAEAELRNAESDFQRNQQMVERGFLSRTQFDLSRRERDVARDRVAEA 160 SI K + E ++++ L + QF + ++ + + Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNV---SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKK 212 Query: 161 RANLDEGLKGDREERRQALQAAVRRADAQIAELQAQIDDLQ 201 RA + A + R + ++++DD Sbjct: 213 RAER------------LTVLARINRYENLSRVEKSRLDDFS 241 Score = 51.8 bits (124), Expect = 1e-09 Identities = 29/205 (14%), Positives = 77/205 (37%), Gaps = 24/205 (11%) Query: 75 LEAQLDALHAARNQVQAQLDESLHGTREESIRALKASLAQAEAELRNAESDFQRNQQMVE 134 ++ Q + Q + LD+ + + A + + E R +S ++ Sbjct: 191 IKEQFSTWQNQKYQKELNLDK-----KRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 135 RGFLSRTQFDLSRRERDVARDRVAEARANLDE------GLKGDREERRQALQAAV----R 184 + +++ + A + + ++ L++ K + + Q + + R Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 185 RADAQIAELQAQI----DDLQ---VRAPVNGEVGPIPA-EQGELINAYSPLLTLVRLDDS 236 + I L ++ + Q +RAPV+ +V + +G ++ L+ +V DD+ Sbjct: 306 QTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365 Query: 237 YFV-FNLREDILAKVRKGDRIVMQV 260 V ++ + + G +++V Sbjct: 366 LEVTALVQNKDIGFINVGQNAIIKV 390
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.006 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 9/170 (5%) Query: 60 LPSLRYDYNKARNDSTVSQGDARVERDYRSYASTLSLEQPLFDYEAYARYRQ-GEAQAL- 117 L +L + + + S++ Q R S + P ++ E + L Sbjct: 127 LTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLR 186 Query: 118 ---FADEQFRGRSQELA---VRLFAAYSETLFAREQVLLAEAQRRALETQLAFNQRAFEE 171 EQF + + L +E L ++ E R +++L + Sbjct: 187 LTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHK 246 Query: 172 GEGTRTDLLET-RARLSLTRAEEIAAGDRAAAARRTLEAMLGQALEDREL 220 + +LE + + L A L + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 416 bits (1072), Expect = e-145 Identities = 96/435 (22%), Positives = 170/435 (39%), Gaps = 8/435 (1%) Query: 15 AALELDEK---RFSRLGWGLVLLGFVGFLLWAGLAPLDKGVGVSGTVMVAGSRKAVQHPT 71 A LEL E R RL ++ V + + L ++ +G + +G K ++ Sbjct: 44 AHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIE 103 Query: 72 GGLVRHIRVHEGERVEAGQVLLEMDATQARAQADGLFAQYLAALASLARLSAERDEKARI 131 +V+ I V EGE V G VLL++ A A A + L A R Sbjct: 104 NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELN 163 Query: 132 EFPAELLALDDPRLPTLLEQQ----RQLHDSRRRALRLELDGLAETVAGSQAQLDGLQAA 187 + P EL D+P + E++ L + + + + +A+ + A Sbjct: 164 KLP-ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 188 LRSKEQQRAALEEQLRGLRQLASEGYVPRNRLLDSERLLAQVNGEIAGDLGSLGSTRRQI 247 + E + +L L + + ++ +L+ E + E+ L +I Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282 Query: 248 LELRLRMAQRREKFQEEVRGSLADAQVRAEELRNRLASARFDLANSEVRAPVAGLVVGQE 307 L + + F+ E+ L L LA S +RAPV+ V + Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342 Query: 308 VFTEGGVIAPGQQLMEILPERQPLLVDARLPVEMVDKVRVGLPVELMFSAFSQSTTPRVE 367 V TEGGV+ + LM I+PE L V A + + + + VG + AF + + Sbjct: 343 VHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLV 402 Query: 368 GEVTLVSADRLLDERSEAPYYRVRIRVGEEGVRRLAGLEIRPGMPVEAFVRSGERSLLNY 427 G+V ++ D + D+R + + + + GM V A +++G RS+++Y Sbjct: 403 GKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISY 462 Query: 428 LFKPLADRTHLALGE 442 L PL + +L E Sbjct: 463 LLSPLEESVTESLRE 477
>PF06438#Heme acquisition protein HasAp Length = 205 Score = 276 bits (706), Expect = 1e-97 Identities = 204/205 (99%), Positives = 205/205 (100%) Query: 1 MSISISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGFNPGPFDGSQYALKS 60 MSISISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGFNPGPFDGSQYALKS Sbjct: 1 MSISISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGFNPGPFDGSQYALKS 60 Query: 61 TASDAAFIAGGDLHYTLFSNPSHTLWGKLDSIALGDTLTGGASSGGYALDSQEVSFSNLG 120 TASDAAFIAGGDLHYTLFSNPSHTLWGKLDSIALGDTLTGGASSGGYALDSQEVSFSNLG Sbjct: 61 TASDAAFIAGGDLHYTLFSNPSHTLWGKLDSIALGDTLTGGASSGGYALDSQEVSFSNLG 120 Query: 121 LDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSLSINSTFDQLAAAGVAHA 180 LDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSLSINSTFDQLAAAGVAHA Sbjct: 121 LDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLKAVDPSLSINSTFDQLAAAGVAHA 180 Query: 181 TPAAAAAEIGVVGVQELPHDLALAA 205 TPAAAAAE+GVVGVQELPHDLALAA Sbjct: 181 TPAAAAAEVGVVGVQELPHDLALAA 205
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 109 bits (275), Expect = 2e-28 Identities = 79/362 (21%), Positives = 138/362 (38%), Gaps = 61/362 (16%) Query: 319 RVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIE-RLK-------ADPHFHFVEGD 370 + L+ G GFIG H+S+RLL G ++V G+D +D + LK A P F F + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 371 IGIHSEWLE--YHVKKCDVVLPLVAIATPIEYT-RNPLRVFELDFEENLRIVRYCVKYG- 426 + E + + + V + Y+ NP + + L I+ C Sbjct: 61 LADR-EGMTDLFASGHFERVFISPHRLA-VRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 427 KRVVFPSTSEVYGMCQDPDFDEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYGQ-QGLR 485 + +++ S+S VYG+ + F D S V P++ +Y+ +K+ + + Y GL Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDS--VDHPVS----LYAATKKANELMAHTYSHLYGLP 172 Query: 486 FTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGI 545 T R F GP R D A ++A+ +EG I + + G KR FT +DD Sbjct: 173 ATGLRFFTVYGPW-GRPDMALFKFTKAM-------LEGKSIDVYNYGKMKRDFTYIDDIA 224 Query: 546 EALARIIDN---------------RDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHP 590 EA+ R+ D ++ NIGN + + L Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVE-LMDYIQALEDALGIEA 283 Query: 591 LRAQFPPFAGFREVESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFF 650 + P G DV ++ + P +++ + ++++ Sbjct: 284 KKNMLPLQPG---------------DVLETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328 Query: 651 LH 652 Sbjct: 329 RD 330
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 609 bits (1573), Expect = 0.0 Identities = 219/565 (38%), Positives = 340/565 (60%), Gaps = 13/565 (2%) Query: 401 ERLQAIAASPGIASGPAHVQVAQRFEFQPR-GESPAHERERLLRAKRAVDEEIVGLVERS 459 ++ IAAS G+A A + + + + + E E+L A EE+ + +++ Sbjct: 3 HKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQT 62 Query: 460 TVKA---IREIFVTHREMLDDPELAEQVQLRL-NRGESAEAAWSRVVEDSAAQQEALHDA 515 EIF H +LDDPEL + ++ ++ N +AE A V + + E++ + Sbjct: 63 EASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNE 122 Query: 516 LLAERAADLRDLGRRVLARLCGVEAPREPE--QPYILVMDEVGPSDVARLDAQRVAGILT 573 + ERAAD+RD+ +RVL L GVE + +++ +++ PSD A+L+ Q V G T Sbjct: 123 YMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFAT 182 Query: 574 ARGGATSHSAIIARALGIPALVGAGAAVLGLEPGTALLLDGEHGWLQVAPSTEQLQQAAA 633 GG TSHSAI++R+L IPA+VG ++ G +++DG G + V P+ E+++ Sbjct: 183 DIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEE 242 Query: 634 ERDARQQRQARADAQRLEPARTRDGHAVEVCANLGDTAGAARAVELGAEGVGLLRTEFVF 693 +R A ++++ EP+ T+DG VE+ AN+G + G EG+GL RTEF++ Sbjct: 243 KRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLY 302 Query: 694 MNNARAPDLATQEAEYRRVLDALDGRPLVARTLDVGGDKPLPYWPIPHEENPYLGLRGIR 753 M+ + P Q Y+ V+ +DG+P+V RTLD+GGDK L Y +P E NP+LG R IR Sbjct: 303 MDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIR 362 Query: 754 LTLQRPQILETQLRALFRAAGERPLRVMFPMVGSLDEWRQARDLALRLREEI------PL 807 L L++ I TQLRAL RA+ L+VMFPM+ +L+E RQA+ + ++++ Sbjct: 363 LCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVS 422 Query: 808 ADLQLGIMVEVPSAALLAPVLAREVDFFSVGTNDLTQYTLAIDRGHPSLSAQADGLHPAV 867 +++GIMVE+PS A+ A + A+EVDFFS+GTNDL QYT+A DR + +S HPA+ Sbjct: 423 DSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAI 482 Query: 868 LQLIDMTVRAAHAEGKWVGVCGELAADPLALPLLVGLGVDELSVSARSIALVKAGVRELQ 927 L+L+DM ++AAH+EGKWVG+CGE+A D +A+PLL+GLG+DE S+SA SI ++ + +L Sbjct: 483 LRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLS 542 Query: 928 LVAARGLARKALGLASAAEVRALVE 952 + A+KAL L +A EV LV+ Sbjct: 543 KEELKPFAQKALMLDTAEEVEQLVK 567
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 37.5 bits (87), Expect = 3e-05 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 15/79 (18%) Query: 132 GEVVIFSAGTGNPFFTT-------------DSAACLRAIEIDADVVLKATKVDGVYTADP 178 G +VI S G G P D A A E++AD+ + T V+G Sbjct: 186 GVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALY-- 243 Query: 179 FKDPNAEKFERLTYDEVLD 197 + + + +E+ Sbjct: 244 YGTEKEQWLREVKVEELRK 262
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 32.0 bits (72), Expect = 0.014 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 63 ILQQAWQRFDWGDDADIALVAVGGYGRGELHPYSDVDLLILLDSEDQESFREPIEGFLTL 122 I++ + QR D + +G R H + +++L+ L + Q E GFL Sbjct: 538 IVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVTLSQQGQPVSSETY-GFLNR 596 Query: 123 LWDIGLEVGQSVRSVQQCAEEARADLTVI 151 L + + + Q + ++QQ E A+A L+++ Sbjct: 597 LTEAKITLSQQLNTLQQQQESAKAQLSIL 625
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.4 bits (84), Expect = 2e-04 Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 11/149 (7%) Query: 12 ISGMFFMLGLCFGSLSSRMATIKDGLQLSDGVFGSA-LFAMSAGVVLSLPVSGWMIAKLG 70 + G + G +S +KD QLS GS +F + V++ + G ++ + G Sbjct: 263 LCGGIIFGTVA-GFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRG 321 Query: 71 SRNV---GVTAILANAVLLSLVPLASSVYQLAALLFVSGF-SYSAVNVSNNTQASLSEAL 126 V GVT + + + S + +S + ++FV G S++ +S +SL + Sbjct: 322 PLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQE 381 Query: 127 IGKTELPFFHGIWGLAGFVGAGFGALMIG 155 G + F+ G G ++G Sbjct: 382 AGAGM-----SLLNFTSFLSEGTGIAIVG 405 Score = 29.8 bits (67), Expect = 0.019 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 2/127 (1%) Query: 245 FMGAMTVGRLLLNRVADRFGTRSTLQWSGGLALIG-MVTTIAYPSLLASIIGFCLVGLGI 303 FM ++G + +++D+ G + L + + G ++ + + I+ + G G Sbjct: 58 FMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGA 117 Query: 304 CTVIPLVAGAAARSSSMAPSS-AIAAVLTIGFLGTLIGPPLIGFLSEAFGLRYAFGACVV 362 LV AR A + +I +G +GP + G ++ Y ++ Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI 177 Query: 363 LAIGIIL 369 I + Sbjct: 178 TIITVPF 184
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.6 bits (74), Expect = 0.004 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 12/94 (12%) Query: 161 SSLTNTSVGELFLAGVIPGLL--LAAAFMLLNAVYAYRNGLQARHAAPAWGEILAALSGA 218 +L N G + G+L ++A+F+L N + AA A E+ + G Sbjct: 233 PNLDNIGAG----LDTVSGILSAISASFILSN-----ADADTRTKAA-AGVELTTKVLGN 282 Query: 219 LTALIAPVIIVAGIVLGLVTPTESGALIALYVAL 252 + I+ II GL T + LIA V L Sbjct: 283 VGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTL 316
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 30.4 bits (68), Expect = 0.004 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 11/124 (8%) Query: 5 QPKRALLVIDVQNEYVSGNLRIEFPAIQSSLERIGAAMDAAHAAGIPIVVVQHLA---PA 61 P RA+L+I Y + I + GIP+V P Sbjct: 27 DPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPD 86 Query: 62 D--------SPLFARGSRQAELHEVVASRPYQHKVEKQLASSFVGTGLADWLRERDIDTL 113 D P G + ++ +A + K S+F T L + +R+ D L Sbjct: 87 DRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQL 146 Query: 114 AVVG 117 + G Sbjct: 147 IITG 150
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.003 Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 9/144 (6%) Query: 141 RTPETAGLSLEHVEVESADGTTEIHTLDEPEDQAVIEAQKEGEQAPAEVSP------EVA 194 +T E A E E ++ + E + + E +E + ++VSP V Sbjct: 1081 QTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140 Query: 195 AQAEGAPPVASEGAQVLAAPAQGTPAAPQQPVTAAPAGTAPAPAPGTAPAVPATASPAAP 254 QAE A T A +QP + + V S Sbjct: 1141 PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSS--NVEQPVTESTTVNTGNSVVEN 1198 Query: 255 PAPSEPAAA-PVVAGEGQGVVKVQ 277 P + PA P V E K + Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNR 1222
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 107 bits (269), Expect = 2e-27 Identities = 79/363 (21%), Positives = 139/363 (38%), Gaps = 56/363 (15%) Query: 22 VGIDLGTTNSLVAAVRSGVAEPLPDAQGRLILPSAVRYHAERAEVGESARAAAAEDPFNT 81 + IDLGT N+L+ G+ L PS V +RA +S A + Sbjct: 13 LSIDLGTANTLIYVKGQGIV---------LNEPSVVAIRQDRAGSPKSVAAVGHD----- 58 Query: 82 VISVKRLMGRGLEDVKQLGEQLPYRFRQGESHMPFIETVQGLKSPV----EVSADILRE- 136 K+++GR + I ++ +K V V+ +L+ Sbjct: 59 ---AKQMLGRTPGN---------------------IAAIRPMKDGVIADFFVTEKMLQHF 94 Query: 137 LRQRAETTLGGELVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 196 ++Q + ++ VP +R+A +++A+ AG + L+ EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 197 KGAEGLVAIYDLGGGTFDISILRLTRGVFEVLATGGDTALGGDDFDHAIAGWVIEQAGLS 256 + D+GGGT +++++ L V +GGD FD AI +V G Sbjct: 155 VSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSL 209 Query: 257 ADLDPGSQRQLLQIACAAKERLTDEASVR---VAYG-DWSGELSRATLDELIEPFVARSL 312 + ++R +I A E VR +A G L+ + E ++ + + Sbjct: 210 IG-EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIV 268 Query: 313 KSCRRAVRDSGVDLEEI---RSVVMVGGSTRVPRVRTAVGELFGCEPLTDIDPDQVVAIG 369 + A+ +L R +V+ GG + + + E G + DP VA G Sbjct: 269 SAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARG 328 Query: 370 AAI 372 Sbjct: 329 GGK 331
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 27.0 bits (59), Expect = 0.045 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 103 ELEELQDSADLAGVATFKRRLKAAQAELEREFAACWDDA-----QRREEAERLVRRMQFL 157 EL + + A A +R A E R+ A + A QRR+E ER + Sbjct: 111 SATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQ 170 Query: 158 DKLAQEVRQLEERLDD 173 KLA+ + L + Sbjct: 171 LKLAEAEEKRLAALSE 186
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 28.7 bits (64), Expect = 0.021 Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 10/57 (17%) Query: 45 DAVARASGATDILDAARVVDTLEEALSGCSVVLG------TSARDRRIPW----PLL 91 D+++ ++ A+D++ R + T G +++LG +++D +P+ PL+ Sbjct: 342 DSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLI 398
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 303 bits (778), Expect = e-105 Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 20/299 (6%) Query: 8 INFMGIRNVAFAVTLILTVIALGSWFTKGINFGLDFTGGTLIELTYEQPADLGKVRGQLV 67 +F + F +++ + ++ G+NFG+DF GGT I D+G R L Sbjct: 14 FDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALE 73 Query: 68 GAGYEDAVVQSFGDAR------DVLVRMPSED------------PELGKKVATALQQADA 109 D ++ D ++R+ ++ EL KV TAL D Sbjct: 74 PLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDP 133 Query: 110 GNPANLKRVEYVGPQVGEELRDQGGLGMLLALGGILLYVGFRFQWKFALGAILSLVHDAI 169 + E VGP+V EL +L A I+ Y+ RF+W+FALGA+++LVHD + Sbjct: 134 A--LKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVL 191 Query: 170 IVMGVLSFFQVTFDLTVLAAVLAVVGYSLNDTIVIFDRVRENFRVLRKADLVENLNISTS 229 + +G+ + Q+ FDLT +AA+L + GYS+NDT+V+FDR+REN + L + +N+S + Sbjct: 192 LTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVN 251 Query: 230 QTLLRTIATSVSTLLAIAALLFFGGDNLFGFSIALFVGVMAGTYSSIYIANVVLIWLNL 288 +TL RT+ T ++TLLA+ +L +GGD + GF A+ GV GTYSS+Y+A +++++ L Sbjct: 252 ETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGL 310
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 81.0 bits (200), Expect = 1e-18 Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 15/180 (8%) Query: 446 TIGPSLGADNIAKGIDASLWGMLFVSLFIIVIY---RF---FGVIATVALAFNMVMLVAL 499 ++GP + + + + + L + +I+ Y RF F + A VAL ++++ V L Sbjct: 142 SVGPKVSGELVWTAVWS-----LLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGL 196 Query: 500 MSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEL--ANGMSVQRAIHEGFNRAFTA 557 ++L L +A ++ G +++ V++F R+RE L M ++ ++ N + Sbjct: 197 FAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSR 256 Query: 558 ILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKK 617 + +T+LL + G ++GF M G+ T ++++ V A ++F G D K Sbjct: 257 TVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYV--AKNIVLFIGLDRNK 314
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.4 bits (68), Expect = 0.009 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 3 SAKNLKITFNPGTPIETRALRGLSLDIPAGQFVTVIGSNGAGKSTFLNAVSGDLP-IDS- 60 S+ + + +N +E L D G T NG + + S LP I Sbjct: 457 SSTPITMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQET 516 Query: 61 -GQILIDDEDVTRKPVWARANRVARVFQDPMAGTCEDLTIEENMALA 106 +I+ + +D+ A DP+ T D+T++E + +A Sbjct: 517 TARIIFNGKDLN----LVERRIAAVNPSDPLETTKPDMTLKEALKIA 559
>YERSINIAYOPE#Yersinia virulence determinant YopE protein signature. Length = 219 Score = 217 bits (553), Expect = 1e-70 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 23/220 (10%) Query: 9 SPSFAVELHQAASGRLGQIEARQVATPSE---AQQLAQRQDAPKGEGLLARLGAALVRPF 65 S S + + S +G++ R V+ + A LA R ++P+G L +R+ L Sbjct: 8 STSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVA 67 Query: 66 VAIMDWLGKLL--GSHA---RTGPQPSQDAQPAVMSSAVVFKQMVLQQALPMTLKGLDKA 120 +++ ++ ++ GSH P P+Q P S ++ + + + LP ++ Sbjct: 68 HSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSI---KQLAAETLPKYMQ----- 119 Query: 121 SELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLLERSIGGIA 180 +L +L E L + H + A+G G LR T G+ E + +A +L + GI Sbjct: 120 -QLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCG-GELQAEASAILNTPVCGIP 177 Query: 181 LQQWGTTGGAASQLV-----LDASPELRREITDQLHQVMS 215 QWGT GGAAS V L + + + Q+ +++S Sbjct: 178 FSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLS 217
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 170 bits (432), Expect = 2e-58 Identities = 51/115 (44%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Query: 5 YRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFT--RLEGQGDA-TA 61 + AI QLF L L P+ E V+ ++VG CH+ EHP +LMFT L+ + T Sbjct: 4 FEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETL 63 Query: 62 SEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR 116 N+FSQD KPIL D G +LWNRQPL LD ++ QLE LV AE L+ Sbjct: 64 LSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQ 118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 1e-19 Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 18/197 (9%) Query: 13 RLLLVDDHPMMRKGVAQLLELEDDLSVVGEAGSGEEALRLAAELDPDMILLDLNMKGMNG 72 +L+ DD +R + Q L V + R A D D+++ D+ M N Sbjct: 5 TILVADDDAAIRTVLNQALSRAG-YDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 73 LDTLRALREAGVDARIVVFTVSDDKGDVVNVLRAGADGYLLKDMEPERLLEHIRQAATGQ 132 D L +++A D ++V + + + GA YL K + L+ I +A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA-- 120 Query: 133 MTLSPQLTQILAQALRGDD---RSKSLDELTERERQILRQIAHGYSNKMIARKLDITE-G 188 + +++ + G RS ++ E+ ++L ++ MI E G Sbjct: 121 -EPKRRPSKLEDDSQDGMPLVGRSAAMQEI----YRVLARLMQTDLTLMI-----TGESG 170 Query: 189 TVKVHVKRVLHKLGMRS 205 T K V R LH G R Sbjct: 171 TGKELVARALHDYGKRR 187
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.1 bits (210), Expect = 1e-21 Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 7/180 (3%) Query: 5 VAFVTGCSSGIGRALADAFQRAGYRVWA----SARKEDDVRALAEAGFQAVQ--LDVNDA 58 +AF+TG + GIG A+A G + A + E V +L A DV D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 59 AALARLAEELGVEAAGLDVLVNNAGYGAMGPLLDGGVDAMRRQFETNVFAVVGVTRALFP 118 AA+ + + E +D+LVN AG G + + F N V +R++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 119 -LLRRKSGLVVNVGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAPFGVEVLEVQPGA 177 ++ R+SG +V VGS + AY +SKAA + L LELA + + V PG+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (275), Expect = 7e-31 Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 10/229 (4%) Query: 14 KVVLVSGGCSGIGRALALRFARAGARLAILDLDQAALDSLVQHLRDHLGGEALGLRCDVA 73 K+ ++G GIG A+A A GA +A +D + L+ +V L+ A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLK-AEARHAEAFPADVR 67 Query: 74 DADAVERAVALAVERFGGIDVLVNNAGITHRGTFAETGLGVFRKVMAVNFFGAVHCTRAA 133 D+ A++ A G ID+LVN AG+ G + +VN G + +R+ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 134 LPSLLERR-GQIVVLGSLTGFAPLLYRSAYNASKHALHGLFDTLRMELEGTGVSVTLACP 192 +++RR G IV +GS P +AY +SK A L +EL + + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 193 GFTATDLRKNALVGD--------GSVTRQPVQVLGSQVASPVEVAEAIF 233 G T TD++ + + GS+ + ++A P ++A+A+ Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236
>SECA#SecA protein signature. Length = 901 Score = 46.8 bits (111), Expect = 2e-07 Identities = 16/35 (45%), Positives = 20/35 (57%) Query: 448 DNISQRATPGNGATKNVSRNAPCPCGSNKKYKKCC 482 D+ + A + V RN PCPCGS KKYK+C Sbjct: 863 DSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCH 897
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 338 bits (869), Expect = e-112 Identities = 135/390 (34%), Positives = 192/390 (49%), Gaps = 59/390 (15%) Query: 273 FDLDALHAAADQAPCLLRGQAGELHVRLSAPRAKARRLEREVPDDAAL---DPRIAESLR 329 FDL L +A L+ P+ + +LE + D L + E R Sbjct: 106 FDLTELIGIIGRA--------------LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151 Query: 330 LAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGY 389 + R+ +L ++I GE+G GKE+ AR LH RR+ PFVA+N AAIP LIESELFG+ Sbjct: 152 VLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH 211 Query: 390 VGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQA 449 GAFTGA + G +QA+GGTLFLDEIGDMP+ QTRLLRVL +GE +G Sbjct: 212 EKGAFTGAQTRST-GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIR 270 Query: 450 VDIQVVCATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAH 509 D+++V AT++DL + G FREDLY+RL LPPLR+R++ + + R ++ Sbjct: 271 SDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK 330 Query: 510 CGVRI-ELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAELRGEGRTP 568 G+ + + ALE + + WPGNVR+L +++R AL + + ELR E P Sbjct: 331 EGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSE--IP 388 Query: 569 ASACESGGGP--------------------------------------ERDALLDALVRH 590 S E E +L AL Sbjct: 389 DSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTAT 448 Query: 591 RWKPMAAARELGISRATLYRRVRRHGIRMP 620 R + AA LG++R TL +++R G+ + Sbjct: 449 RGNQIKAADLLGLNRNTLRKKIRELGVSVY 478
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (319), Expect = 2e-37 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 14/262 (5%) Query: 11 LSSRVALVTGAGRGIGRGIALALARAGADVAVADLDPQVAEETAAAIRSLGRRSLALGVD 70 + ++A +TGA +GIG +A LA GA +A D +P+ E+ +++++ R + A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 71 VSDGDSVRAMVERVATEFGRLDVAVNNAGVISIRKVAELSLADWDRVMNVNARGVFLCCQ 130 V D ++ + R+ E G +D+ VN AGV+ + LS +W+ +VN+ GVF + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 131 AELPLMQAQRWGRIVNLSSIAGKVGLPDLAHYCASKFAVIGFSNALAKEVARDGVTVNAL 190 + M +R G IV + S V +A Y +SK A + F+ L E+A + N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 191 CPGIVGTGM----WRGEDGLSGRWRQAGESEAQSWERHQASLLPQGEAQTVEDMGQLVVY 246 PG T M W E+G + + E+ +P + D+ V++ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTG--------IPLKKLAKPSDIADAVLF 237 Query: 247 LAC--APHVTGQAIAVDGGFSL 266 L A H+T + VDGG +L Sbjct: 238 LVSGQAGHITMHNLCVDGGATL 259
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 30.9 bits (69), Expect = 0.004 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 11/73 (15%) Query: 17 RVIGACLLGGLLAAGAPAQAEEATGNARWVSDSLTTFVRS------GPTDGYRIVGTLTS 70 ++ + L+G LL GAP A + V DS +FV G GY V ++ Sbjct: 11 KLFASILIGALLGIGAPPSAHAGADD---VVDSSKSFVMENFSSYHGTKPGY--VDSIQK 65 Query: 71 GQKVELLGTQGNY 83 G + GTQGNY Sbjct: 66 GIQKPKSGTQGNY 78
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 37.6 bits (87), Expect = 4e-05 Identities = 53/289 (18%), Positives = 97/289 (33%), Gaps = 28/289 (9%) Query: 2 PTRRRSALPLLALALSLFA-TLAAAGEPKPARIVSTTPSVTGILLAMDAPLVASAATTPS 60 RR L +AL+ L+ A A P RIV+ +LLA+ A T Sbjct: 6 LISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINY 65 Query: 61 RLTDAKGFFSQWAKVADQRGVEVLYRNLRFD--IEAVIAQDPDLLVASA---TGADSAAP 115 RL + S+ V+ LR + +E + P +V SA + A Sbjct: 66 RL-----WVSEPPLPDS-----VIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLAR 115 Query: 116 Y-RAELEAQGVPTLVVDYSKHSWQELATELGRHTGLERQAQAAIQRFDAYTAEVAA-AIA 173 + ++ S E+A L + A+ + +++ + + + Sbjct: 116 IAPGRGFNFSDGKQPLAMARKSLTEMADLLNL----QSAAETHLAQYEDFIRSMKPRFVK 171 Query: 174 PPQGPVSVVGYNIAGNYSIGRQASPQARLLEALGFQVAELPEALAGKVTRASDFQFISRE 233 P+ + + + S +L+ G +P A G+ +S + Sbjct: 172 RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYG-----IPNAWQGETNFWG-STAVSID 225 Query: 234 NLPAAIAGDSVFLLGASDDDVQAFLADPVLANLSAVREKRVYALGPSSF 282 L A D + + D+ A +A P+ + VR R + F Sbjct: 226 RLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWF 274
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 29.8 bits (67), Expect = 0.011 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Query: 7 RRRRLRAWGLLAGALLLALA---ALASLALGSRPVPLAVTLDA 46 R + AW + A LA A A+A+L P +T+D Sbjct: 29 ERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (299), Expect = 6e-35 Identities = 75/258 (29%), Positives = 117/258 (45%), Gaps = 32/258 (12%) Query: 5 RTALVTGATRGIGLALARRLAASGWSVVGI-----------------ARHASDDFPGRLL 47 + A +TGA +GIG A+AR LA+ G + + ARHA + FP Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFP---- 63 Query: 48 CCDLADPAQTAETLRGLLSESA-VDALVNNAGIALPQSLENLDLAALQQVFDLNVRVAVQ 106 D+ D A E + E +D LVN AG+ P + +L + F +N Sbjct: 64 -ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 107 LAQACLPGLKRSPAGRIVNLCSRAIHGAR-ERTAYAAAKSALVGVTRTWALELAPLGITV 165 +++ + +G IV + S R AYA++K+A V T+ LELA I Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 166 NAVAPGPIETELFRQTRPVGGEEERRILST-------IPMQRLGRPDEVAALIEFLLSEG 218 N V+PG ET++ E+ I + IP+++L +P ++A + FL+S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 219 ASFVTGQVIGVDGGGSLG 236 A +T + VDGG +LG Sbjct: 243 AGHITMHNLCVDGGATLG 260
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.2 bits (120), Expect = 6e-09 Identities = 90/396 (22%), Positives = 138/396 (34%), Gaps = 30/396 (7%) Query: 14 RSTLSVAILAFSAFLIVTTEFLIVGLLPSLARDLQISISAA---GRLVTLFAFTVMLFGP 70 + + ++ + L LI+ +LP L RDL S G L+ L+A P Sbjct: 2 KPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAP 61 Query: 71 PLTAVLAHLPRKPLFVAILLAFALSNGLAALSTDLRLLAVARFVPALMLPVFWGTASETA 130 L A+ R+P+ + L A+ + A + L +L + R V + + A Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 131 AQLAGTERAGQAIARVYLGISCALLLGIPLGTLAANGIGWRGAFWILAGLSLLMAVALVL 190 G ERA + + ++ G LG L G F+ A L+ L + Sbjct: 122 DITDGDERA-RHFGFMSACFGFGMVAGPVLGGLMG-GFSPHAPFFAAAALNGLNFLTGCF 179 Query: 191 FMPAVDRGERLDLRRQARIFGEPLFLANVALSVLVFSAMFVSYTYLADILERIAGI---- 246 +P +GER LRR+A A V A+F + + + I Sbjct: 180 LLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGED 239 Query: 247 ----TPARIGWWLMGFGAV---------GLFGNWLGGRLVDRSPLRATALFLVLLALGMA 293 IG L FG + G LG R + A +LLA A Sbjct: 240 RFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF--A 297 Query: 294 ASVPLAGQPLLFCLALALWGVANTALYPVCQVRVMRSVQHAQALAATSNVAAANAGIGLG 353 +A P++ LA G+ AL + +V + Q S A + +G Sbjct: 298 TRGWMA-FPIMVLLASG--GIGMPALQAMLSRQVD---EERQGQLQGSLAALTSLTSIVG 351 Query: 354 ALLGGETIATLGLERIGFVAAALAVLGLSLLPVVAR 389 LL A G+ A A L L LP + R Sbjct: 352 PLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 4e-23 Identities = 32/149 (21%), Positives = 57/149 (38%) Query: 5 DEALVYVVDDDQGMLESTVWLLESVGLKARPFTQGRDFLDACEGGRHACVLLDVRMPGMG 64 A + V DDD + L G R + G V+ DV MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GLNVQDELLARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDR 124 ++ + DLPV+ +S ++A + GA D++ KP++ L+ + +AL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 125 HARRRRHRDLDAGLRERLDSLTPRERDVL 153 RR + D+ L + +++ Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIY 150
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.7 bits (71), Expect = 5e-04 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 51 LEALLDEQQRALAAVRASAERRAKDVEQALGEARAQAAEQYAAAVRLLQ 99 L+ ++ A A++ A+A +A+ EQA EA+ +A EQ + Sbjct: 200 LQIRMNTLTAAKASIEAAAANKAR--EQAAAEAKRKAEEQARQQAAIRA 246
>PF07132#Harpin protein (HrpN) Length = 356 Score = 31.6 bits (71), Expect = 0.010 Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 621 GSLAGAALGASIGSVVPVVGTLIGGLVGGAIGAWGGSELGGRLGRSLAGDPPAASDN 677 GS+ G LG +G + +G L GGL+GG +G GS LG LG +L G A Sbjct: 62 GSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGGLGGALGA 118
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.002 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 7/94 (7%) Query: 15 IEVFERAWRHGLPVLLKGPTGCGKT---RFVQYMARRLELPLYSVACH---DDLGAADLL 68 V R + L +++ G +G GK R + +R P ++ DL ++L Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELF 209 Query: 69 GRHLIGADGTWWQDGPLTRAVREGGICYLDEVVE 102 G H GA EGG +LDE+ + Sbjct: 210 G-HEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.9 bits (93), Expect = 8e-07 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%) Query: 73 YAEECYSGNVAFLEGW---------YVVPSARRQGVGVALVKAAEHWARGRGCTEFASDT 123 Y E G + W V R++GVG AL+ A WA+ +T Sbjct: 71 YLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLET 130 Query: 124 QLTNSASTSAHLAAGFT 140 Q N ++ + F Sbjct: 131 QDINISACHFYAKHHFI 147
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.002 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 83 YIYDLAVAATRRREGIATALIKKLKAIGAARGAYVIYVQADKGVEDQPAIELYKKLG 139 I D+AVA R++G+ TAL+ K + ++ + A Y K Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD--INISACHFYAKHH 145
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.038 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Query: 228 LAPYYL--EQGWSAQESGLLLGFLTAMEV-LSGLLAPALASRSRDRRPVLVGLTALMLAG 284 + PY + S E G ++ F M V + G + L R R VL + Sbjct: 278 MVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDR-RGPLYVLNIGVTFLSVS 336 Query: 285 FLGLAWAPASLPLLWALCLGLGIGGLFPMGLIVC--LDHFDAPQRAGQLAALVQGAGYLI 342 FL ++ + + + +GGL ++ + Q AG +L+ +L Sbjct: 337 FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLS 396 Query: 343 AGVSPWIAGLL 353 G I G L Sbjct: 397 EGTGIAIVGGL 407
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.1 bits (130), Expect = 4e-10 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 1 MSAAKKAPVILIADPDPWSRDLLGQLVLGVRCDARLVLCGDGGEALAHCRRRRFALILAE 60 M+ A IL+AD D R +L Q + R + + + L++ + Sbjct: 1 MTGAT----ILVADDDAAIRTVLNQALS--RAGYDVRITSNAATLWRWIAAGDGDLVVTD 54 Query: 61 LNLPQVDGFELLREARLRRSVAEQPFILISDRADQASVRAAVSLAPTAYLVKPFQAENLM 120 + +P + F+LL + R + P +++S + + A YL KPF L+ Sbjct: 55 VVMPDENAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 121 QRLR 124 + Sbjct: 113 GIIG 116
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.014 Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 45 TLLGPSGCGKTTLLRMIAGFEFPTEGEILL 74 L G G GK+TL+ + G +F ++ + Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 37.4 bits (86), Expect = 8e-05 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 10 LGLTLALGGSAQAAGQLNVVSWSGYFSPQLLEKFEKESGIRVTVDSYDSNETLLAKLKQG 69 L ++L+ S+ + + ++ Y SP LLE+ +++ + T +Y SNE L+ Sbjct: 12 LFVSLSSILSSCGSTTFVLANFESYISPLLLERVQEKHPL--TFLTYPSNEKLINGFANN 69 Query: 70 GAGYDVAIPSQQFVPILVKEALLERFD 96 Y VA+ S V L++ LL D Sbjct: 70 --TYSVAVASTYAVSELIERDLLSPID 94
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 74.7 bits (183), Expect = 4e-18 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 5/192 (2%) Query: 5 KAVLVMGAGDATGGAIARRFAREGYVACVARRNAEKLEPLVQAIRDQGGEALACGCDARQ 64 K + GA G A+AR A +G N EKLE +V +++ + A A D R Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 EQQVIDLFARIEGEVGALEAVIFNVGANVWFPITETTERVYRKVWEMAAFGGFLTGREAA 124 + ++ ARIE E+G ++ ++ G I ++ + + + + G F R + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 RVMLPRQRGTIIFTGATASLRGRAHFAAFSGAKFALRALAQSMARELGPKGI--HVAHPI 182 + M+ R+ G+I+ G+ + R AA++ +K A + + EL I ++ P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP- 187 Query: 183 IDGAIDTDFIRE 194 G+ +TD Sbjct: 188 --GSTETDMQWS 197
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.006 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 8/48 (16%) Query: 88 RGQGLGHQLMERALQ-AAER----LWLDTPVYLSAQAHLQAYYGRYGF 130 R +G+G L+ +A++ A E L L+T + H Y ++ F Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHF---YAKHHF 146
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 27.9 bits (62), Expect = 0.026 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 10/81 (12%) Query: 72 GRWHLLFFGYTFCPDVCPTTLAQLRELQGKLPQEVRDDL-QVVFVSVDPNRDTPQQIKQY 130 G ++ GY+F +V P L + +P R ++ V +S + D + + Sbjct: 115 GTQKVILIGYSFGAEVIPFVLNE-------MPARYRKNVLGAVLLSPSQSSDFEIHVSEM 167 Query: 131 LGYFNAGFQGLTGTPENIQKL 151 + N + LT PE + K Sbjct: 168 VTSDNQSARYLTL-PE-VNKQ 186
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 38.2 bits (88), Expect = 6e-05 Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 25/96 (26%) Query: 180 PRPDHVPAEQHDFRPPEPVIPPPPATTPAPPPAGGAPLIPADWDPFAELLGNTPAPSATP 239 PRPD P P P P +PA PA N PAP+ P Sbjct: 311 PRPDLTPGSAE-----APNAQPLPEVSPAENPA------------------NNPAPNENP 347 Query: 240 VAQPLPTAEPTPLAMPFADPGTTQQPQPQPQPQPQP 275 +P P EP P P A+P T QP +P P Sbjct: 348 GTRPNP--EPDPDLNPDANPDTDGQPGTRPDSPAVP 381 Score = 35.5 bits (81), Expect = 4e-04 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 12/67 (17%) Query: 230 GNTPAPSATPVAQPLPTAEPTPLAMPFADPGTTQQPQPQP------------QPQPQPAS 277 G+ AP+A P+ + P P P +PGT P+P P QP +P S Sbjct: 318 GSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDS 377 Query: 278 VAAPTPP 284 A P P Sbjct: 378 PAVPDRP 384
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 74.2 bits (182), Expect = 1e-16 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 16/138 (11%) Query: 318 AQRVAVEDAVDRSVVTIRGDELFASASASVRDEFQPLLLRIADALRKVK---GQVLVTGH 374 A A V T++ D LF A+++ E Q L ++ L + G V+V G+ Sbjct: 201 APAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGY 260 Query: 375 SDNRPIATLRYPSNWKLSQARAQEVADLLGATTGDAGRFTAEGRSDTEPVATNASAEGRA 434 +D + Y N LS+ RAQ V D L + A + +A G ++ PV N + Sbjct: 261 TDRI--GSDAY--NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQ 316 Query: 435 R---------NRRVEITV 443 R +RRVEI V Sbjct: 317 RAALIDCLAPDRRVEIEV 334
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 4e-05 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 4/111 (3%) Query: 260 DRLAPSALEATQIRPLATPQGSPRASNPPPAEPAPMPPADLGGLQPVSIQLPPVTPSAGG 319 +AP+ LE Q P+ P P EP P PP + + P P Sbjct: 53 TMVAPADLEPPQ-AVQPPPE--PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Query: 320 ATPPPPPPSQAA-KPPSPPPPPLPPAKPRAGGSRTPLIAAAAAAAAVLLAI 369 P + P+ P PA+P + + + A+ A+ Sbjct: 110 KVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRAL 160 Score = 30.3 bits (68), Expect = 0.029 Identities = 22/112 (19%), Positives = 30/112 (26%), Gaps = 9/112 (8%) Query: 261 RLAPSALEATQIRPLATPQGSP---------RASNPPPAEPAPMPPADLGGLQPVSIQLP 311 A + P P+ P P +P P P + + + Sbjct: 63 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVE 122 Query: 312 PVTPSAGGATPPPPPPSQAAKPPSPPPPPLPPAKPRAGGSRTPLIAAAAAAA 363 S T P P S A + P + PRA P A A A Sbjct: 123 SRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQAL 174
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 2e-05 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 3/119 (2%) Query: 85 TPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEP 144 P+A P + V P P P P P + APVV+ + + P V + Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKE---APVVIEKPKPKPKPKPKPVKKVEQPKRDV 118 Query: 145 SIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQ 203 A P R + K + + + + + A+A + Sbjct: 119 KPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIE 177 Score = 34.6 bits (79), Expect = 6e-04 Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 5/91 (5%) Query: 82 RSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEP 141 P A P + P + PP A P P V E P P Sbjct: 40 VIELPAPA-QPISVTMVAPADLEPPQAVQPP----PEPVVEPEPEPEPIPEPPKEAPVVI 94 Query: 142 EEPSIDPLAAAMPAGAAPAVRTERNVQVEGA 172 E+P P P + + Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRP 125
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 677 bits (1748), Expect = 0.0 Identities = 245/581 (42%), Positives = 344/581 (59%), Gaps = 54/581 (9%) Query: 1 MDIQRSILIVALAVVSYLLVLQWNKDYGQPELPAASASMNTTQGLPDTPSASGTSSDVPT 60 MD QR++L++AL VS+++ W +D T Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQA-----------------------QQTT 37 Query: 61 AQSSAAGSEAADK--PVAVSDKLIQVKTDVLDLAIDPRGGDIVQLGLLQYPRRLDRPDVP 118 ++ A AAD+ P + KLI VKTDVLDL I+ RGGD+ Q L YP+ L+ P Sbjct: 38 QTTTTAAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-P 96 Query: 119 FPLFDNGRERTYLAQSGLTGADGPDASSAG-RPLFHSAQSSYQLADGQNELVVDLSFS-H 176 F L + + Y AQSGLTG DGPD + G RPL++ + +Y LA+GQNEL V ++++ Sbjct: 97 FQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDA 156 Query: 177 DGVNYIKRFTFHRGLKADCSDKEKAQKKIECINENAYQVGVSYLIDNQSGKTWSGNLFAQ 236 G + K F RG Y V V+Y + N K + F Q Sbjct: 157 AGNTFTKTFVLKRG---------------------DYAVNVNYNVQNAGEKPLEISSFGQ 195 Query: 237 LKRDGSADPSSTTATG---VSTYLGAAVWTPDSPYKKISTKDM-DKEQFKESVQGGWVAW 292 LK+ + P T + + T+ GAA TPD Y+K + D E S +GGWVA Sbjct: 196 LKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAM 255 Query: 293 LQHYFVTAWVPTKGEQHQVMTRKDGQGNYIVGFTGPTLSVPAGSKVETDLTLYAGPKLQK 352 LQ YF TAW+P + T G G +G+ + V G + TL+ GP++Q Sbjct: 256 LQQYFATAWIPHNDGTNNFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQD 315 Query: 353 HLKELSPGLELTVDYGFLWFIAQPIFWLLQHIHSLIGNWGWSIIALTVLIKLAFFPLSAA 412 + ++P L+LTVDYG+LWFI+QP+F LL+ IHS +GNWG+SII +T +++ +PL+ A Sbjct: 316 KMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKA 375 Query: 413 SYRSMARMRAVSPKMQAIKEQHGDDRQKMSQAMMELYKKEKINPLGGCLPILVQMPVFLS 472 Y SMA+MR + PK+QA++E+ GDD+Q++SQ MM LYK EK+NPLGGC P+L+QMP+FL+ Sbjct: 376 QYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLA 435 Query: 473 LYWVLLESVEMRQAPWLGWITDLSVKDPFFILPIVMGGTMLIQQMLNPTP-PDPMQAKVM 531 LY++L+ SVE+RQAP+ WI DLS +DP++ILPI+MG TM Q ++PT DPMQ K+M Sbjct: 436 LYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIM 495 Query: 532 KLMPIIFTFFFLWFPAGLVLYWVVNNCLSIAQQWYITRKIE 572 MP+IFT FFLWFP+GLVLY++V+N ++I QQ I R +E Sbjct: 496 TFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIYRGLE 536
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.004 Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 16/155 (10%) Query: 5 LLPVLLFAALALAVLGAAKRFLMWRRGRPAKVDWIGGL----MQMPRRYLVDLHHVVERD 60 LL L AA+ A++ A + GR + G+ + Y+ D+ ER Sbjct: 76 LLVSLAGAAVDYAIMATAPFLWVLYIGR-----IVAGITGATGAVAGAYIADITDGDERA 130 Query: 61 RYMSRTHVATAGGFVLAVLLAILVHGFGLHGRILGFALLAATALMFVGALF--VARRRLD 118 R+ G V +L L+ GF H A L + L + Sbjct: 131 RHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERR 190 Query: 119 PPSRLSKGP-----WMRLPKSLLAFAASFFLATLP 148 P R + P W R + A A FF+ L Sbjct: 191 PLRREALNPLASFRWARGMTVVAALMAVFFIMQLV 225
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 31.1 bits (70), Expect = 0.012 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 230 NLLKSKQAEGDALIKNTGCGYLTDMKENPWLMRYFD 265 N + S Q DA I+ G GY+ + + WL R+F Sbjct: 193 NTVPSTQV-ADARIEYVGNGYINEAQNMGWLQRFFL 227
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 49.7 bits (118), Expect = 3e-08 Identities = 31/210 (14%), Positives = 69/210 (32%), Gaps = 10/210 (4%) Query: 25 KRKKLAADLLGYLNDAQQ---QMDELYAANQQVSAQRA-------LQQDEIAQLQSRSNS 74 ++ L L G +N + ++ L A + A++A + ++ + Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 75 LAEQLQAESVRLASTAKALDLEKSKLHEALQALAQANTQFHDARLRESQALTRIAELEQQ 134 L + A + R A KAL+ + + + R+++ + Sbjct: 216 LEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF 275 Query: 135 LTDQQTQLSEKAQFIDELQQTLTEVRQQLDALRLYKRQLTEQCTDQATQIQTLEVRSQEL 194 T ++ L+ ++ Q L ++ L + LE Q+L Sbjct: 276 STADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKL 335 Query: 195 ASQLQVEQANTAILEERKSQALAQITELEA 224 Q ++ +A+ L + +LEA Sbjct: 336 EEQNKISEASRQSLRRDLDASREAKKQLEA 365 Score = 49.3 bits (117), Expect = 4e-08 Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 11/239 (4%) Query: 25 KRKKLAADLLGYLNDAQQQMDELYAANQQVSAQRALQQDEIAQLQSRSNSLAEQLQAESV 84 K A + L + +++ S + + + ++ + L+ Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 85 RLASTAKALDLEKSKLHEALQAL----AQANTQFHDARLRESQALTRIAELEQQLTDQQT 140 + + A + L AL A+ A + +I LE + Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 141 QLSEKAQFIDELQQTLTEVRQQLDALRLYKRQLTEQCTDQATQIQTLEVRSQELASQLQV 200 + ++ + ++ T ++ L K L + + ++ S +++++ Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 201 EQANTAILEERKSQALAQITELEAFLEDNRNQLLSKEQSVCLLESMTEQLKASHQHLEN 259 +A A LE K+ Q L A + R L + ++ +QL+A HQ LE Sbjct: 286 LEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAK-------KQLEAEHQKLEE 337
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.9 bits (62), Expect = 0.036 Identities = 11/24 (45%), Positives = 18/24 (75%) Query: 30 LLEKLKEDGFSVSLRTVQRDLDRL 53 L++ LK+DG++V+ TV RD+ L Sbjct: 25 LVDILKKDGYNVTQATVSRDIKEL 48
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.2 bits (96), Expect = 1e-05 Identities = 44/332 (13%), Positives = 106/332 (31%), Gaps = 12/332 (3%) Query: 333 GMSERLNQLFSSLNEQQGRQMEVAQQQSAAFETQLQRISGSAEERQAQMEQRFAELMSGL 392 + N + ++ + + +++Q + + + +E + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTA-D 139 Query: 393 TNQLQTQLGTAQQRDEERQVLFERLLGQASSSQTAMLEQFSSSTREQMQAMAEAGNERHS 452 + +++T + L + L G + S + + + +A E+ Sbjct: 140 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 199 Query: 453 NLEKVFSRLMMNLNTQLDSQMGAAEQREQARQQRFQEQLDQVSTHQQELLSGLASAVQAT 512 FS L+++ A R+ ++ + ++ + ++ + A Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 513 QQQSRLMADQH--QQLLGQLKQVSDATAQSSKHMDSSANQLGLLSANLRQAADSLGQRLE 570 +Q+ L +++ L S L SL + L+ Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 571 AVSHSIERAGQQNAELATQLQSQAATLAQLQATLLEGAQRFEQAAGEARNGFGEMKSAQQ 630 A + ++ ++ +L Q + A+ L+ L A R + EA E + ++ Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL--DASREAKKQLEA-----EHQKLEE 372 Query: 631 EFLSS--VRHEFTALGEKLREQVEAVEKQAEE 660 + S R + RE + VEK EE Sbjct: 373 QNKISEASRQSLRRDLDASREAKKQVEKALEE 404
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 38.4 bits (89), Expect = 2e-05 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 33/143 (23%) Query: 98 LSIPNDLLGFDTGAYDIHAAYQARALEIGKVINEVISREDRVEFLD-TIFIEGHTDNRPL 156 ++ +D+L F+ + QA ++++ S+ ++ D ++ + G+TD Sbjct: 215 FTLKSDVL-FNFNKATLKPEGQA-------ALDQLYSQLSNLDPKDGSVVVLGYTDRIGS 266 Query: 157 QGFMGKGNWGLSTFRAISLWQFWGSALSPDEQLARLKNKDGKPLFSVSGYGETRPVLVD- 215 + N GLS RA S+ + S P +++ S G GE+ PV + Sbjct: 267 DAY----NQGLSERRAQSVVDYLISKGIPADKI------------SARGMGESNPVTGNT 310 Query: 216 -------QQTEDDFKRNRRIDIR 231 D +RR++I Sbjct: 311 CDNVKQRAALIDCLAPDRRVEIE 333
>PF06580#Sensor histidine kinase Length = 349 Score = 182 bits (463), Expect = 1e-56 Identities = 76/308 (24%), Positives = 137/308 (44%), Gaps = 23/308 (7%) Query: 64 LFVQWIVLLSAALFCRLRPLLARLPVALAGSACCLLVVALT------LGCTAVAEHYQLG 117 +F I L+ L R + R +L V + A ++L Sbjct: 43 IFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLL 102 Query: 118 GELTRAGE-------VNLYLRHALIALIMSALVLRYFYLQS-------QWRRQQQAELQA 163 + +++ ++ + S L + + ++ QW+ A+ +A Sbjct: 103 AFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQ-EA 161 Query: 164 RLESLQARIRPHFLFNSLNSIASLIELDPLKAEHAVLDLSDLFRASLAK-PGTLVSWEEE 222 +L +L+A+I PHF+FN+LN+I +LI DP KA + LS+L R SL VS +E Sbjct: 162 QLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADE 221 Query: 223 LALARRYLSIEQYRLGDRLQLDWQVHGVPANLPIPQLTLQPLLENALIYGIQPRVEGGLV 282 L + YL + + DRLQ + Q++ ++ +P + +Q L+EN + +GI +GG + Sbjct: 222 LTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKI 281 Query: 283 QVEAVYREGVFQLCVSNPYDEALESPPSKGTRQALHNIDARLGALFGPKASLSVERRDGR 342 ++ G L V N AL++ + T L N+ RL L+G +A + + + G+ Sbjct: 282 LLKGTKDNGTVTLEVENTGSLALKNTK-ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGK 340 Query: 343 HYTCLRYP 350 + P Sbjct: 341 VNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 4e-19 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 5/136 (3%) Query: 3 VLIVDDEPLARERLARLVGQLDGYRVLEPSASNGEEALTLIDSLKPDIVLLDIRMPGLDG 62 +L+ DD+ R L + + + GY V SN I + D+V+ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRA-GYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LQVAARLCEREAPPAVIFCTAHDEF--ALEAFQVSAVGYLVKPVRSEDLAEALKKASRPN 120 + R+ + V+ +A + F A++A + A YL KP +L + +A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 RVQLAALTKPPASGGS 136 + + + L G Sbjct: 123 KRRPSKLEDDSQDGMP 138
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 98.5 bits (245), Expect = 1e-27 Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 16/202 (7%) Query: 22 KDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHE---- 77 KD+L+Y++GA LG + + + L G++ G L + E+++ +L + + Sbjct: 31 KDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEEQMKDVLSKFQKDLM 90 Query: 78 -------NATTETPRTTPAEARFLANEKARFGVRELTGGVLVSELRRGQGNGIGAATQVH 130 N E + +A FL+ K++ G+ L G+ + G G G + V Sbjct: 91 AKRSAEFNKKAEENKAK-GDA-FLSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVT 148 Query: 131 VRYRGLLADGQVFDQSESA---EWFALDSVIEGWRTALRAMPVGACWRVVIPSAQAYGHE 187 V Y G L DG VFD +E A F + VI GW AL+ MP G+ W V +P+ AYG Sbjct: 149 VEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPR 208 Query: 188 GAGDLIPPDAPLVFEIDLLGVR 209 G I P+ L+F+I L+ V+ Sbjct: 209 SVGGPIGPNETLIFKIHLISVK 230
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 62.4 bits (151), Expect = 1e-12 Identities = 44/220 (20%), Positives = 67/220 (30%), Gaps = 7/220 (3%) Query: 134 KAKPATKPAAKAAAKPAVKTVAAKPAAKPAAKPAAKPA-AKPAAKTAAAKPAAKPTAKPA 192 T P A P+V + + A+ P PA A P+ T +K +K Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEE-IARVDEAPVPPPAPATPSETTETVAENSKQESKTV 1051 Query: 193 AKPAAKPAAKTAAAKPAAKPAAKPVAKPAAKPAAKTAAAKPAAKPAAKPVAKPTAKPAAK 252 K TA + AK A V A + A + K K TA + Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNV--KANTQTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 253 TAAAKPAAKPAAKPAAKPAAKPVAKSAAAKPAAKPAAKPAAKPAAKPAAKPVAAKPAATK 312 A K P P +P A+PA + K ++ T Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSP---KQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Query: 313 PATAPAAKPAATPSAPAAASSAASATPAAGSNGAAPTSAS 352 PA + ++ P S+ + + N T A+ Sbjct: 1167 DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Score = 45.1 bits (106), Expect = 3e-07 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 19/246 (7%) Query: 45 EKQRGKAQEKLHKARTKLQDAAKAGKTKAQAK--ARETISDLEEALDTLKARQADTRTYI 102 E A+ +++T ++ A +T AQ + A+E S+++ T + Q Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ------- 1087 Query: 103 VGLKRDVQESLKLAQGVGKVKEAAGKA-LESRKAKPATKPAAKAAAKPAVKTVAAKPAAK 161 + +E+ E KA +E+ K + K ++ + K ++ +P A+ Sbjct: 1088 --SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE-QSETVQPQAE 1144 Query: 162 PAAKPA----AKPAAKPAAKTAAAKPAAKPTAKPAAKPAAKPAAKTAAAKPAAKPAAKPV 217 PA + K TA + AK T+ +P + P + Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP--ENT 1202 Query: 218 AKPAAKPAAKTAAAKPAAKPAAKPVAKPTAKPAAKTAAAKPAAKPAAKPAAKPAAKPVAK 277 +P + ++ + V T ++ + A V Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLS 1262 Query: 278 SAAAKP 283 A AK Sbjct: 1263 DARAKA 1268 Score = 33.9 bits (77), Expect = 0.001 Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 1/119 (0%) Query: 233 PAAKPAAKPVAKPTAKPAAKTAAAKPAAKPAAKPAAKPAAKPVAKSAAAKPAAKPAAKPA 292 P + + V A P+ + A+ PV A A P+ A Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET-TETVA 1041 Query: 293 AKPAAKPAAKPVAAKPAATKPATAPAAKPAATPSAPAAASSAASATPAAGSNGAAPTSA 351 + + A A A + A + A + + T Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.006 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 1/118 (0%) Query: 12 QAIDRATAPIRAVTRSSTGMGRALKESRDQLKALQAQQKDIS-SLRTQREAVRQTSEKLA 70 +A I+ + + + Q + L A ++ + L REA +Q + Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Query: 71 GAQQRLRQYREQLQGMDAPSARFQKSFAAAAAQVDKLKAKHGEQRAELQRLVGQLGKA 128 +++ + Q + +++ A+ KL+ ++ A Q L L + Sbjct: 334 KLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 391
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.5 bits (211), Expect = 4e-22 Identities = 57/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%) Query: 3 ERKTLLLTGASRGIGHATVKYFNAAGWRVFTASRQSWASECPWADGEENHIH-----LDL 57 E K +TGA++GIG A + + G + E + + H D+ Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 58 EDIPGVEASLELIREKLGDGRLHALVDNAGISPKGEGGERLGVL-ETDYATWLRVFNVNL 116 D ++ I ++G + LV+ AG+ R G++ W F+VN Sbjct: 67 RDSAAIDEITARIEREMG--PIDILVNVAGVL-------RPGLIHSLSDEEWEATFSVNS 117 Query: 117 FSTALLARGLFAELKAAQGTVINVTSIAGSKVHPFAGVAYATSKAALSALTREMAHDFGP 176 +R + + + I + V + AYA+SKAA T+ + + Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 177 HGVRVNAIAPGEIDTSI-------------LSPGTEEIVERSIPLHRLGRPEEIASLIYF 223 + +R N ++PG +T + + G+ E + IPL +L +P +IA + F Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 224 LCTSGASYVNGAEIHVNGG 242 L + A ++ + V+GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 483 bits (1245), Expect = e-173 Identities = 236/383 (61%), Positives = 288/383 (75%) Query: 3 SSAIIALLIVGLDAMGLGLIMPVLPTLLRELVPAEQVAGHYGALLSLYALMQVVFAPMLG 62 I+ L V LDA+G+GLIMPVLP LLR+LV + V HYG LL+LYALMQ AP+LG Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 63 QLSDSYGRRPVLLASLAGAAVDYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADST 122 LSD +GRRPVLL SLAGAAVDY IMA+AP LWVLYIGR+V+G+TGATGAVA + IAD T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 123 GEGSRARWFGYMGACYGAGMIAGPALGGMLGGISAHAPFIAAALLNGFAFLLACIFLKET 182 RAR FG+M AC+G GM+AGP LGG++GG S HAPF AAA LNG FL C L E+ Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 183 HHSHGGTGKPVRIKPFVLLRLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWN 242 H + + P R + + AL AVFFI+QL+GQVPAALWVI+GEDRF W+ Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 243 TATVGLSLAAFGATHAIFQAFVTGPLSSRLGERRTLLFGMAADATGFVLLAFATQGWMVF 302 T+G+SLAAFG H++ QA +TGP+++RLGERR L+ GM AD TG++LLAFAT+GWM F Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 303 PILLLLAAGGVGMPALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTALYSATAG 362 PI++LLA+GG+GMPALQAMLS V +QG LQG+L +LT+L+SI GPL FTA+Y+A+ Sbjct: 305 PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT 364 Query: 363 AWNGWVWIVGAILYLICLPILRR 385 WNGW WI GA LYL+CLP LRR Sbjct: 365 TWNGWAWIAGAALYLLCLPALRR 387
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 312 bits (800), Expect = e-111 Identities = 102/205 (49%), Positives = 138/205 (67%), Gaps = 2/205 (0%) Query: 1 MTKLDKGTVIAAALELLNEVGMDSLTTRKLAERLKVQQPALYWHFQNKRALLDALAEAML 60 M +L++ +VI AALELLNE G+D LTTRKLA++L ++QP LYWH +NKRALLDALA +L Sbjct: 1 MARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEIL 60 Query: 61 AERHTRSLPEENEDWRVFLKENALSFRTALLSYRDGARIHAGTRPTEPNFGTAETQIRFL 120 A H SLP E W+ FL+ NA+SFR ALL YRDGA++H GTRP E + T ETQ+RF+ Sbjct: 61 ARHHDYSLPAAGESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFM 120 Query: 121 CAEGFCPKRAVWALRAVSHYVVGSVLEQQASDADERVPDRPDVSEQAPSSFLHDLFHELE 180 GF + ++A+ AVSH+ +G+VLEQQ A DRP ++ L + ++ Sbjct: 121 TENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAAL--TDRPAAPDENLPPLLREALQIMD 178 Query: 181 TDGMDAAFNFGLDSLIAGFERLRSS 205 +D + AF GL+SLI GFE ++ Sbjct: 179 SDDGEQAFLHGLESLIRGFEVQLTA 203
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 63.4 bits (154), Expect = 5e-13 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 2/138 (1%) Query: 37 VPAMPGVLNTTPSIIQLTLSLYMVMLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGA 96 +P + N P+ + +M+ +G ++G LSD++G + +LL G S+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 ACSSTALAFVAF-RLVQAVGASAMLVATFATVRDVYANRPEGAVIYGLFSSMLAFVPALG 155 + + + R +Q GA A A V Y + +GL S++A +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGA-AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 156 PIAGALIGEFWGWQAIFI 173 P G +I + W + + Sbjct: 156 PAIGGMIAHYIHWSYLLL 173
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 58.4 bits (141), Expect = 2e-11 Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Query: 36 AVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLFGPLSDRLGRRPVLLGGGLAYVVASM- 94 ++P + N ++ T +++ G ++G LSD+LG + +LL G + S+ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI 95 Query: 95 GLALTSSAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILGSMLAIVPAV 154 G S + + R +Q GA+A + V Y +E +G++GS++A+ V Sbjct: 96 GFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 155 GPLLGALVDMWLGWRAIFAFLGLGMI 180 GP +G ++ ++ W + + +I Sbjct: 155 GPAIGGMIAHYIHWSYLLLIPMITII 180
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.5 bits (60), Expect = 0.017 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 15/89 (16%) Query: 38 GYGLFDDAALQRLCFVRAAFEAGIGLDALARLCRALDAADCDETAAQLAVLSQFVER--- 94 Y F D ++ L AA+ + +A++ L ++ + + + A ++ E+ Sbjct: 172 AYMRFLDREMEGL---TAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAA 228 Query: 95 ---------RREALADLEVQLAAMPTAPA 114 R+ A AMP + Sbjct: 229 EAKRKAEEQARQQAAIRAANTYAMPANGS 257
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 36.3 bits (84), Expect = 2e-04 Identities = 17/33 (51%), Positives = 21/33 (63%) Query: 341 LAGVTLHAARALGLEASHGSLEVGKLADFVAWD 373 +A T++ A A GL GSLEVGK AD V W+ Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVLWN 438
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.7 bits (105), Expect = 3e-07 Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 8/188 (4%) Query: 110 VPSRNEVKELHSK--VDTLTKQIEKLTGVSVKPAAKAAAKPAAKPAAKPAAKTAAAKPAA 167 VPS NE + V T +V +K +K K TA + A Sbjct: 1010 VPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVA 1069 Query: 168 KPA-----AKAAAKPAAKPAAKKTAAKTAAAKPAAKPTAKAAAKPATKPAAKAAAKPAAK 222 K A A A+ ++ +T K A + AK T+ + ++ Sbjct: 1070 KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV-TSQ 1128 Query: 223 PAAKPAAATAAKPAAKPAAKPAAKKPAAKKPAAKPAAAKPAAPAASSSAPAAPAATPAAS 282 + K + +P A+PA + + + A PA +S+ T + + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 283 APAANAPA 290 N+ Sbjct: 1189 VNTGNSVV 1196 Score = 42.7 bits (100), Expect = 1e-06 Identities = 38/197 (19%), Positives = 55/197 (27%), Gaps = 12/197 (6%) Query: 100 RLNSAISRLGVPSRNEVKELHSKVDTLTKQIEKLTGVSV-KPAAKAAAKPAAKPAAKPAA 158 R + L P EV++ + VDT I + P+ + + A+ P Sbjct: 972 RNVNGRYDLYNP---EVEKRNQTVDT--TNITTPNNIQADVPSVPSNNEEIARVDEAPVP 1026 Query: 159 KTAAAKPAAKPAAKAAAKPAAKPAAKKTAAKTAAAKPAAKPTAKAAAKPATKPAAKAAAK 218 A A P+ A +K + AK A K K + Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEA-KSNVKANTQTNEV 1085 Query: 219 PAAKPAAKPAAATAAKPAAKPAAKPAAKKPAAKKPAAKPAAAKPAAPAASSSAPAAPAAT 278 + K T K A + AK K P +P S P A Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEV-PKVTSQVSPKQEQSETVQPQAE 1144 Query: 279 PAASAPAANAPATPSSQ 295 PA N P + Sbjct: 1145 PA----RENDPTVNIKE 1157
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 2e-13 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 8/148 (5%) Query: 1 MKTRDRILECSLLLFNEQGEPNVSTLEIANELGISPGNLYYHFHGKEPLVMALFERFQAE 60 +TR IL+ +L LF++QG + S EIA G++ G +Y+HF K L ++E ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 LAPLL-----DPPEEVRLGAEDYWLFLHLIVERLAHYRFLFQDL---SNLTGRLPRLARG 112 + L P + + + + R L + + G + + + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 113 IRTWLGALKRTLATLLARLKADRQLRSD 140 R + L + L +D Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPAD 157
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 29.2 bits (65), Expect = 0.039 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 9 LKRHRRNKRIGLLVALLALLAVGLLVSPWL 38 L R R N RI L+VA A +A+ + + W Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWA 45
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.3 bits (71), Expect = 0.012 Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 144 ITFNVTMVTGAATDAIKVVIREGLTVVFLFLYLLWMNWKLTLVMLAILPV 193 ++ T + + + E + +VFL +YL N + TL+ +PV Sbjct: 325 YPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPV 374
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 28.2 bits (63), Expect = 0.045 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 346 GCFDILHAGHVTYLEQARAQGDRLIVGVNDDASVTRLKGVGRPINSVDRRMAVLAGL 402 G FD + GH+ +E+ D++ V V + + +P+ SV R+ +A Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAVLRNPN-------KQPMFSVQERLEQIAKA 56
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.7 bits (183), Expect = 1e-18 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 4/184 (2%) Query: 6 RFSRLEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEA 65 R ++ E ++ + +++ L + G S+ +I AGV+ G I H+ K L +E Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 66 YLAVTGRVMRLLRGAIDTAPGGARPRLSAFFEASFSAELLDPQ---LLDAWLAFWGAVGS 122 + + L PG L + + + + L++ VG Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 123 IEAIGRVHDHSYGEYRALLVGVLRQLAEEGGW-ADFDAELAAISLSALLDGLWLESGLNP 181 + + + + E + L+ E AD AAI + + GL P Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 182 ATFT 185 +F Sbjct: 183 QSFD 186
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 1e-23 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 6/136 (4%) Query: 5 PRVLVVDDDPVIRELLQAYLGEEGYDVLCAGNAEQAEACLAECAHLGQPVELVLLDIRLP 64 +LV DDD IR +L L GYDV NA +A +LV+ D+ +P Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-----GDGDLVVTDVVMP 58 Query: 65 GKDGLTLTRELR-VRSEVGIILITGRNDEIDRIVGLECGADDYVIKPLNPRELVSRAKNL 123 ++ L ++ R ++ +++++ +N + I E GA DY+ KP + EL+ Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 124 IRRVRHAQASAGPARQ 139 + + + Q Sbjct: 119 LAEPKRRPSKLEDDSQ 134
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.1 bits (130), Expect = 1e-09 Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 16/157 (10%) Query: 500 SALEVLLVEDVALNREVAQGLLERDGHRVMLAEDAGPALALCRQRRFDLILLDMHLPGMA 559 + +L+ +D A R V L R G+ V + +A DL++ D+ +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 560 GLELCAGIRRQLDGLNRATPIFAFTASIQPDMVRRYFAAGMQGVLGKPLRMDELRRALGE 619 +L I++ L P+ +A + G L KP + EL Sbjct: 62 AFDLLPRIKKARPDL----PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG---- 113 Query: 620 VGTSVPALAVEAALDRQMLETHRRLLGRHKLAGLLGN 656 + AL + L+G Sbjct: 114 --------IIGRALAEPKRRPSKLEDDSQDGMPLVGR 142
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.9 bits (199), Expect = 2e-20 Identities = 61/244 (25%), Positives = 100/244 (40%), Gaps = 14/244 (5%) Query: 6 FITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVL-PLTLDVRDRAA 64 FITGA G GEA AR A G + E+L+ + L A+ R DVRD AA Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAA 71 Query: 65 MSAVVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPR 124 + + + E + L+N AG+ L S ++W+ N G+ ++R + Sbjct: 72 IDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 125 LIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGL 184 ++ +G SIV +GS P Y +KA F+ L +L +R + PG Sbjct: 131 MMDRRSG-SIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 185 CESEFSLV----------RFGGDQARYDKTYAGAHPIQPEDIAETI-FWIMNQPAHLNIN 233 E++ G + +P DIA+ + F + Q H+ ++ Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMH 249 Query: 234 SLEI 237 +L + Sbjct: 250 NLCV 253
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.2 bits (120), Expect = 9e-09 Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 8/147 (5%) Query: 55 AEIGLLLSAGLFGMAAGSLFIAPWADRWGRRPLILACLALSGLGMLASALSQAAWQLALL 114 A G+LL+ A + + +DR+GRRP++L LA + + A + W L + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 115 R---GLTGLGIGGILASSNVIASEYASRRWRGLAVSLQSTGYALGATLGGLLAVWLIGAW 171 R G+TG A I R G + G G LGGL+ G + Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-----GGF 157 Query: 172 GWRSVFVFGAGLTLAVIPLVCLCLPES 198 + F A L C LPES Sbjct: 158 SPHAPFFAAAALNGLNFLTGCFLLPES 184 Score = 36.7 bits (85), Expect = 1e-04 Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 7/146 (4%) Query: 51 NLGGAEIGLLLSA-GLFGMAAGSLFIAPWADRWGRRPLILACLALSGLGMLASALSQAAW 109 + IG+ L+A G+ A ++ P A R G R ++ + G G + A + W Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 110 QLALLRGLTGLGIGGILASSNVIASEYASRRW---RGLAVSLQSTGYALGATLGGLLAVW 166 + L G G+ A +++ + R +G +L S +G L + Sbjct: 302 MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Query: 167 LIGAW-GWRSVFVFGAGLTLAVIPLV 191 I W GW ++ GA L L +P + Sbjct: 362 SITTWNGW--AWIAGAALYLLCLPAL 385 Score = 34.4 bits (79), Expect = 8e-04 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 5/189 (2%) Query: 253 RTTLLLWALFFLVMFGFYFIMSWTPKLLVAAGLSTAQGITGGTLLSIGGI---FGAALLG 309 R +++ + L G IM P LL S G LL++ + A +LG Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 310 GLAARFRLERVLALFMLLTAALLALFSLSAGLPGAALPLGLLIGLCANACVAGLYALAPS 369 L+ RF VL + + A A+ + + L L +G ++ A A A Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL--WVLYIGRIVAGITGATGAVAGAYIAD 122 Query: 370 LYDASVRATGVGWGIGVGRGGAILSPLVAGLLLDDGWQPLSLYGAFAAVFVAAAAVLPLL 429 + D RA G+ G + P++ GL+ A L Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 430 GARRRERSP 438 + + ER P Sbjct: 183 ESHKGERRP 191
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.4 bits (110), Expect = 1e-07 Identities = 33/187 (17%), Positives = 75/187 (40%), Gaps = 5/187 (2%) Query: 16 NRTHWLILGWGCFIMLFDGYDMVIYGSVVPRLMQEWQLSPVQAGTLGSCALFGMLFGGTL 75 N H IL W C + F + ++ +P + ++ P + + + G + Sbjct: 9 NLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAV 68 Query: 76 LAPLADRFGRRRLV---IATTLLASLAAFLTGHARDPLELGAGRFFTGLALGALVPSAIN 132 L+D+ G +RL+ I S+ F+ GH+ L L RF G A + Sbjct: 69 YGKLSDQLGIKRLLLFGIIINCFGSVIGFV-GHSFFSL-LIMARFIQGAGAAAFPALVMV 126 Query: 133 LISEFAPAGRRSTLVTVMSAFYSVGAVLSALLAIAMIPAWGWQSVFYVAVLPVLAVPLML 192 +++ + P R ++ + ++G + + + W + + ++ ++ VP ++ Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLM 186 Query: 193 RWLPESA 199 + L + Sbjct: 187 KLLKKEV 193 Score = 32.2 bits (73), Expect = 0.005 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 13/152 (8%) Query: 258 VAFAMCMLMSYG------LNTWLPKLMAGGGYALGSSLAFLVTLNVGATLGALFGGWLAD 311 + +C+L + LN LP + S+ + ++G G L+D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 312 RLGAGRTLVLFFAL--AAASLAALGLGPGPWLLNGLLVVA--GATTIGTLAVIHAYAAQF 367 +LG R L+ + + + +G L+ + A + V+ A++ Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVV---VARY 131 Query: 368 YPAWVRSTGVGWAAGVGRLGAIAGPMLGGSLL 399 P R G + +G GP +GG + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 64.3 bits (156), Expect = 6e-15 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 10/179 (5%) Query: 1 MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLG 60 M+ ++ Q+TR ++ A L +G S SL E+ +AAG+ Y HF D L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQ-QGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59 Query: 61 LALVAEVDETFRATLR--AVRRNEFELGGLIDASVRIF-LDAVGANRSQF---LFLAREQ 114 + + + L L + + + R +F E Sbjct: 60 SEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 115 YGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELI 173 G ++QA +L D + L D+ + + L+ Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIE---QTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1096 bits (2837), Expect = 0.0 Identities = 422/567 (74%), Positives = 480/567 (84%), Gaps = 2/567 (0%) Query: 2 KISRQAYADMFGPTVGDRVRLADTDLWLEVERDFTVYGEEVKFGGGKVIRDGMGQSQL-G 60 ++SR AYA+MFGPTVGD+VRLADT+L++EVE+DFT +GEEVKFGGGKVIRDGMGQSQ+ Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 61 AAQVVDTVITNALILDHWGVVKADVGLKDGRIQAIGKAGNPDIQPGVNIAIGAGTEVIAG 120 VDTVITNALILDHWG+VKAD+GLKDGRI AIGKAGNPD+QPGV I +G GTEVIAG Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAG 123 Query: 121 EGMILTAGGIDTHIHFICPQQIEEALMSGVTTMIGGGTGPAAGTNATTCTSGPWHMARML 180 EG I+TAGG+D+HIHFICPQQIEEALMSG+T M+GGGTGPA GT ATTCT GPWH+ARM+ Sbjct: 124 EGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMI 183 Query: 181 QAADAFPMNIGFTGKGNASLPLPLEEQVLAGAIGLKLHEDWGSTPAAIDNCLEVAERHDI 240 +AADAFPMN+ F GKGNASLP L E VL GA LKLHEDWG+TPAAID CL VA+ +D+ Sbjct: 184 EAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDV 243 Query: 241 QVAIHTDTLNESGFVETTLGAFKGRTIHTYHTEGAGGGHAPDIIKACGFANVLPSSTNPT 300 QV IHTDTLNESGFVE T+ A KGRTIH YHTEGAGGGHAPDII+ CG NV+PSSTNPT Sbjct: 244 QVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPT 303 Query: 301 RPFTRNTIDEHLDMLMVCHHLDPAIAEDVAFAESRIRRETIAAEDILHDLGAFSMISSDS 360 RP+T NT+ EHLDMLMVCHHL P I ED+AFAESRIR+ETIAAEDILHD+GAFS+ISSDS Sbjct: 304 RPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDS 363 Query: 361 QAMGRVGEVITRTWQTADKMKRQRGRLDGDGARNDNFRARRYIAKYTINPAITHGISHEV 420 QAMGRVGEV RTWQTADKMKRQRGRL + NDNFR +RYIAKYTINPAI HG+SHE+ Sbjct: 364 QAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEI 423 Query: 421 GSVEAGKWADLVLWRPAFFGVKPSLILKGGAIAASLMGDINGSIPTPQPVHYRPMFASYA 480 GS+E GK ADLVLW PAFFGVKP ++L GG IAA+ MGD N SIPTPQPVHYRPMF +Y Sbjct: 424 GSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYG 483 Query: 481 GSRHATSLTFVSQAAFAAGVPQQLGLRKAIGVVSGCR-GVQKSDLIHNGYLPTIEVDAQN 539 SR +S+TFVSQA+ AG+ +LG+ K + V R G+ K+ +IHN P IEVD + Sbjct: 484 RSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPET 543 Query: 540 YQVRADGQLLWCEPADVLPMAQRYFLF 566 Y+VRADG+LL CEPA VLPMAQRYFLF Sbjct: 544 YEVRADGELLTCEPATVLPMAQRYFLF 570
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.9 bits (98), Expect = 3e-07 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 81 RGTVEHSVYVRDDQRGKGLGVQLLQALIERARAQGLHVMVAAIESGNAASIGLHRRLGFE 140 +E + V D R KG+G LL IE A+ ++ + N ++ + + F Sbjct: 89 YALIED-IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 141 ISG 143 I Sbjct: 148 IGA 150
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 26.2 bits (57), Expect = 0.030 Identities = 11/44 (25%), Positives = 21/44 (47%) Query: 68 EPLRHFIRQAREAGARLLMCRQPGVNIDESELIEELDEISSGGE 111 + L+ + G +L RQP ++D + L +L+ + G E Sbjct: 72 DILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAE 115
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.1 bits (65), Expect = 0.005 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 83 VAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGY 133 VA R GV L+ A+E + LM + + N + Y + + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLM-LETQDINISACHFYAKHHF 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.1 bits (88), Expect = 8e-06 Identities = 19/141 (13%), Positives = 52/141 (36%), Gaps = 7/141 (4%) Query: 24 ATLKELAEAAGVSKATLHRFCGTRDNLVQMLEDHGETVLNQIIQACDLEHAEPLEALQRL 83 +L E+A+AAGV++ ++ + +L + + E+ + ++ + ++ R Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 84 IKEHL-------THRELLVFLVFQYRPDFLDPHGEGARWQSYLEALDAFFLRGQQKGVFR 136 I H+ R LL+ ++F + ++ + + + Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEA 151 Query: 137 IDITAAVFTELFITLVYGMVD 157 + A + T ++ G + Sbjct: 152 KMLPADLMTRRAAIIMRGYIS 172
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 1e-06 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 4/104 (3%) Query: 99 LKAAVSRAEGELARNRAVLFEAQARVRRYEPLVKIQAVSQQDFDTATADLRSAEAATRSA 158 + A EL ++ L + ++ + + + Q V+Q + LR Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAK--EEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 159 QADLETARLNLGYASVTAPISGRIGRALV-TEGALVGQGEATLM 201 +L + + AP+S ++ + V TEG +V E TLM Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLM 357 Score = 37.1 bits (86), Expect = 1e-04 Identities = 22/199 (11%), Positives = 67/199 (33%), Gaps = 28/199 (14%) Query: 55 PGRIEPV-RVAEVRARVAGIVVRKRFEEGADVKAGDLLFQIDP-------APLKAAVSRA 106 G++ R E++ IV +EG V+ GD+L ++ ++++ +A Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 107 EGELARNRAVLFEAQARVRRY--------------EPLVKIQAVSQQDFDTATADLRSAE 152 E R + + + E ++++ ++ ++ F T E Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 153 AATRSAQADLETARLNLGYASVTAPISGR---IGRALVTEGALVGQGEATLMARIQQLDP 209 +A+ T + + + +L+ + A+ + ++ + + Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAI---AKHAVLEQENKYVE 263 Query: 210 IYADFTQTAAEALRLRDAL 228 + ++ ++ + Sbjct: 264 AVNELRVYKSQLEQIESEI 282
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1167 bits (3020), Expect = 0.0 Identities = 516/1028 (50%), Positives = 714/1028 (69%), Gaps = 8/1028 (0%) Query: 1 MSEFFIKRPNFAWVVALFISLAGLLVISKLPVAQYPNVAPPQITITATYPGASAKVLVDS 60 M+ FFI+RP FAWV+A+ + +AG L I +LPVAQYP +APP ++++A YPGA A+ + D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQNRLKKAEARMPQ 120 VT V+E+++NG L+Y ST++S G+ I +TF+ GTDPD+AQV VQN+L+ A +PQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNELRRLPGVGKLQFF 180 V QG+ VE++S+ +L++ D + DY A N+ + L RL GVG +Q F Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDD--ISDYVASNVKDTLSRLNGVGDVQLF 178 Query: 181 SSEAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGSSAQELTATLAVKG 240 ++ AMR+W+D L + L+ DV N ++ QN Q+ AG G P Q+L A++ + Sbjct: 179 GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 241 TLDDPQEFGQVVLRANEDGSLVRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGAN 300 +P+EFG+V LR N DGS+VRL DVAR+ELG E+YN+ +R+NG P G I+L+ GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 301 AIQAATLVKQRLAELSAFFPEDMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLF 360 A+ A +K +LAEL FFP+ M+ PYDT+ FV ++I +V+ TL EA++LVFLVM+LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 361 LQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVER 420 LQN+R TLIP+I VPV LLGT ++ G+S+N +TMFGMVLAIG+LVDDAIVVVENVER Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 421 IMAEEGISPAEATVKAMKQVSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSI 480 +M E+ + P EAT K+M Q+ GA+VGI +VLSAVF+P+AF GS G IY+QFS+++ ++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 481 LFSGFLALTFTPALCATLLKPIPEGHHE-KRGFFGAFNRGFARVTERYSLLNSKLVARAG 539 S +AL TPALCATLLKP+ HHE K GFFG FN F Y+ K++ G Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 540 RFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVVDVQLPPGASRVRTDATGEE-LERFL 598 R++L+YA +VA + +LRLP +F+P ED G + +QLP GA++ RT ++ + +L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 599 KSREA-VASVFLISGFSFSGQGDNAALAFPTFKDWSER-GAEQSAAAEIAALNEHFALPD 656 K+ +A V SVF ++GFSFSGQ NA +AF + K W ER G E SA A I Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 657 DGTVMAVSPPPINGLGNSGGFALRLMDRSGVGREALLQARDTLLGEIQTNPKFLYAMM-E 715 DG V+ + P I LG + GF L+D++G+G +AL QAR+ LLG +P L ++ Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 716 GLAEAPQLRLLIDREKARALGVSFETISGTLSAAFGSEVINDFTNAGRQQRVVIQAEQGN 775 GL + Q +L +D+EKA+ALGVS I+ T+S A G +NDF + GR +++ +QA+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 776 RMTPESVLELYVPNAAGNLVPLSAFVSVKWEEGPVQLVRYNGYPSIRIVGDAAPGFSTGE 835 RM PE V +LYV +A G +VP SAF + W G +L RYNG PS+ I G+AAPG S+G+ Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 836 AMAEMERLAAQLPAGIGYEWTGLSYQEKVSAGQATSLFALAILVVFLLLVALYESWSIPL 895 AMA ME LA++LPAGIGY+WTG+SYQE++S QA +L A++ +VVFL L ALYESWSIP+ Sbjct: 839 AMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 896 SVMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAILIVEFAKELWE-QGHS 954 SVML+VP+G +G +LA + NDVYF VGL+T IGLSAKNAILIVEFAK+L E +G Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 955 LRDAAIEAARLRFRPIIMTSMAFILGVIPLALASGAGAASQRAIGTGVIGGMLSATFLGV 1014 + +A + A R+R RPI+MTS+AFILGV+PLA+++GAG+ +Q A+G GV+GGM+SAT L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1015 LFVPICFV 1022 FVP+ FV Sbjct: 1019 FFVPVFFV 1026 Score = 96.1 bits (239), Expect = 4e-22 Identities = 92/506 (18%), Positives = 179/506 (35%), Gaps = 40/506 (7%) Query: 541 FMLVYAGLVAMLGYF-YLRLPEAFVPAEDLGYMVVDVQLP-PGAS-RVRTDATGEELERF 597 F V A ++ M G L+LP A P + V V PGA + D + +E+ Sbjct: 11 FAWVLAIILMMAGALAILQLPVAQYP--TIAPPAVSVSANYPGADAQTVQDTVTQVIEQN 68 Query: 598 LKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSERGAEQSAAAEIAALNEHFALPDD 657 + + ++ +S S S L F + D A+ ++ LP + Sbjct: 69 MNG---IDNLMYMSSTSDSAGSVTITLTFQSGTD--PDIAQVQVQNKLQLATP--LLPQE 121 Query: 658 GTVMAVSPPPINGLGNSGGFALRLMDRSGVGREALLQARDTLLGEIQTNPKFLYAMMEGL 717 V I+ +S + + S D + +N K + + G+ Sbjct: 122 -----VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDY----VASNVKDTLSRLNGV 172 Query: 718 AEAP------QLRLLIDREKARALGVSFETISGTLSAA---FGSEVINDFTNAGRQQRVV 768 + +R+ +D + ++ + L + + QQ Sbjct: 173 GDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNA 232 Query: 769 IQAEQGNRMTPESVLELYVP-NAAGNLVPLSAFVSVKW-EEGPVQLVRYNGYPSIRIVGD 826 Q PE ++ + N+ G++V L V+ E + R NG P+ + Sbjct: 233 SIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIK 292 Query: 827 AAPGFSTGEA----MAEMERLAAQLPAGIGYEWTGLSYQEKVSAGQATSLFAL--AILVV 880 A G + + A++ L P G+ + V + L AI++V Sbjct: 293 LATGANALDTAKAIKAKLAELQPFFPQGMKVLYP-YDTTPFVQLSIHEVVKTLFEAIMLV 351 Query: 881 FLLLVALYESWSIPLSVMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAIL 940 FL++ ++ L + VP+ +G + G S + G++ IGL +AI+ Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411 Query: 941 IVE-FAKELWEQGHSLRDAAIEAARLRFRPIIMTSMAFILGVIPLALASGAGAASQRAIG 999 +VE + + E ++A ++ ++ +M IP+A G+ A R Sbjct: 412 VVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFS 471 Query: 1000 TGVIGGMLSATFLGVLFVPICFVWLL 1025 ++ M + + ++ P LL Sbjct: 472 ITIVSAMALSVLVALILTPALCATLL 497
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 34.6 bits (79), Expect = 8e-05 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 8/141 (5%) Query: 7 ATMGELAELAGVSRATLNRHCGTREGL-KRRLESHARSTLERLTHSAALQRLEPREALRE 65 ++GE+A+ AGV+R + H + L E + E A +P LRE Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 66 LIREHL-------AQRDLLALLMFEQNPGRQAGHGDASWQSYVEALDAFFLRGQQKRVFR 118 ++ L +R L+ ++ + + + ++ + + + Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEA 151 Query: 119 IDISAATFSELFIVLIYGMVD 139 + A + +++ G + Sbjct: 152 KMLPADLMTRRAAIIMRGYIS 172
>PF05844#YopD protein Length = 295 Score = 28.8 bits (64), Expect = 0.038 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 21/123 (17%) Query: 226 VSPGADVYSVGAALGAALTARLPGHEAQV---QVSQQVLDGLKRQTRTFTYLLAGLGIIS 282 ++PGA SVG AA ++P A +QVLD R + L + + ++ Sbjct: 20 IAPGAAGRSVGTPQAAAELPQVPAARADRVELNAPRQVLDP-VRMEAAGSELDSSVELLL 78 Query: 283 LLGGGVGVMNVMLMSVAERRREIGVRMALGARQRDIRNLFLIEAVTLTAAGALSGAVLGV 342 +L +A++ RE+GV QRD N +I A SGA L + Sbjct: 79 IL-----------FRIAQKARELGVL------QRDNENQAIIHAQKAQVDEMRSGATLMI 121 Query: 343 AAA 345 A A Sbjct: 122 AMA 124
>PilS_PF08805#PilS N terminal Length = 185 Score = 30.3 bits (68), Expect = 0.003 Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 3 LKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSN 60 L +R + G +++EVL+ + +I + + S E+N + +N Sbjct: 16 LSARRKKEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLTVIAN 73
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 40.6 bits (95), Expect = 5e-07 Identities = 14/45 (31%), Positives = 30/45 (66%) Query: 8 TGFTLIELLIIVVLLAIMASFAIPNFKQLTERNELQSAAEELNAM 52 GFTL+E+++++V++ ++AS +PN E+ + Q A ++ A+ Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVAL 52
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.9 bits (75), Expect = 2e-04 Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 4 RSQRALTLTELLFALVLLGILGSLALPGMAAWLDGNRQRSVLHELSA 50 QR TL E++ +V++G+L SL +P + + ++ + ++ A Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVA 51
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 525 bits (1355), Expect = 0.0 Identities = 176/477 (36%), Positives = 261/477 (54%), Gaps = 33/477 (6%) Query: 1 MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDG 60 M+ L+ DD+ IR +L L R D R N +A DL +TD+ +PD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALR 120 + DL+ I++ P PV +++A + TAI+A + GA+D+L KP DL L ++ AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 LRNPEAEEAPVDNR----LLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARLI 176 + D++ L+G S M+ + + +L ++ + I+GESG+GKELVAR + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 177 HEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEV 236 H+ G R PFV +N AIP +L+ESE FGH+KG+FTGA G F+ A GGTLFLDE+ Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 237 ADLPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRL 296 D+PM Q +LLR +Q+ VGG+ + DVRI+ AT+KDL + G FR+DLYYRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 297 NVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELE 356 NV+ LR+PPLR+R EDIP L +++ + GL R +A E +K + +PGNVRELE Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 357 NMLERAYTLCEDDQIQPHDLRL---------ADAPGASQEGAASLSEI------------ 395 N++ R L D I + A++ G+ S+S+ Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 396 -------DNLEDYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID 445 + L ++E LI+ AL TR N+ AA LGL ++R ++++LG+ Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 25.3 bits (55), Expect = 0.027 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 1 MGLFRLLFWIALIAIAFWLWRRFTR---PTPRQQQRPQDEPSA 40 M R L IAL+ ++F +W+ + + P P+ QQ Q +A Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTA 43
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 43.3 bits (102), Expect = 4e-06 Identities = 50/266 (18%), Positives = 94/266 (35%), Gaps = 45/266 (16%) Query: 551 MLEGEREKLLRMEQELHRRVIGQDEAVVAVSNAVRRSRAGLADPNRPSGSFLFLGPTGVG 610 + KL Q+ ++G+ A+ + + R L + + G +G G Sbjct: 121 EPKRRPSKLEDDSQDGMP-LVGRSAAMQEIYRVLAR----LMQTDLT---LMITGESGTG 172 Query: 611 KTELCKALAEFLFDTEEALVRIDMSEFMEKHSVARLIGAPPGYVGFEEGGYLTEAIRRKP 670 K + +AL ++ V I+M+ + L G E G T A R Sbjct: 173 KELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRST 224 Query: 671 YSV-------VLLDEVEKAHPDVFNILLQVLEDG---RLTDSHGRTVDFRNTVVVMTSNL 720 + LDE+ D LL+VL+ G + D R +V +N Sbjct: 225 GRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN- 280 Query: 721 GSAQIQELAGDREAQRAAVMDAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRL 780 ++L + ++ FR + R++ V + P R++ I ++ + Sbjct: 281 -----KDL-------KQSINQ---GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFV 325 Query: 781 RKRLAERELSLELSQEALDKLIAVGF 806 ++ E QEAL+ + A + Sbjct: 326 QQAEKEGLDVKRFDQEALELMKAHPW 351 Score = 34.4 bits (79), Expect = 0.002 Identities = 25/177 (14%), Positives = 59/177 (33%), Gaps = 32/177 (18%) Query: 49 LLMQVGFDIAALRSGLNKELDALPKIQSPTGDVNLSQDLARLLNQADRLAQQKGDQFISS 108 L + G+D+ + I + GD+ ++ D+ + + + Sbjct: 22 ALSRAGYDVRITSNAA----TLWRWIAAGDGDLVVT-DV--------VMPDENAFDLLPR 68 Query: 109 ELVLLAAMDENTRLGKLLLGQGVSRKALENAVANLRGGEA-------VNDPNVEESRQAL 161 + + + ++ Q A+ G + +AL Sbjct: 69 ----IKKARPDLPV-LVMSAQN----TFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 162 DKYTVDMTKRAEEG-KLDPVIGRDDEIRRTIQVLQRRTKNN-PVLI-GEPGVGKTAI 215 + +K ++ P++GR ++ +VL R + + ++I GE G GK + Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176
>PF05860#haemagglutination activity domain. Length = 117 Score = 65.2 bits (159), Expect = 1e-14 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 5/93 (5%) Query: 71 TDGRHMVID---QQSHKLITNWNEFSVRADERVSFHQPGQDAVALNRVIGRNGSDIQGRI 127 T+G +I+ Q L ++ EFSV F+ P ++RV G + S+I G I Sbjct: 17 TEGNTRIIERGTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNIISRVTGGSVSNIDGLI 76 Query: 128 DANGK--VFLVNPNGVVFGKSAQVNVGGLVAST 158 AN +FL+NPNG++FG++A++++GG + Sbjct: 77 RANATANLFLINPNGIIFGQNARLDIGGSFVGS 109
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 37.1 bits (86), Expect = 2e-04 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 19/226 (8%) Query: 256 QRYYRAAYQLPLGSRGTRIGLAHAETTYRLVRDFSRLDAHGRAITDSLFVSQPLLRSRSL 315 Y+ A G I + A+ + L V+Q L R+ +L Sbjct: 484 SGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTL 543 Query: 316 SLS-TQLQYENKRLRDDQERTG-RHSRKEIRLWTASISGNAQDRLFGGGQS-----GFSL 368 LS + Y D+Q + G + ++I ++S + + G+ ++ Sbjct: 544 YLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW---TLSYSLTKNAWQKGRDQMLALNVNI 600 Query: 369 AYAHGQLAIDSGEERLLDRYTIGTAGSFDKIMLNAVRLQHLGDRLQLFAQLNAQWSGGNL 428 ++H + + R + ++ A L + L + ++GG Sbjct: 601 PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD 660 Query: 429 DSAEQFDMG-----GPYGVRAFPLGSYKGYGDEGWQASAELRYSLA 469 ++ G YG + D+ Q + + Sbjct: 661 GNSGSTGYATLNYRGGYGN----ANIGYSHSDDIKQLYYGVSGGVL 702
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 26.5 bits (58), Expect = 0.041 Identities = 10/24 (41%), Positives = 12/24 (50%) Query: 36 DHPHPPRQVTLVQWEHIEALGTLL 59 D P P +TL QW L +LL Sbjct: 47 DEPAPLNAMTLAQWSSPNVLSSLL 70
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.013 Identities = 5/25 (20%), Positives = 10/25 (40%) Query: 66 RRGYLQHLVVDPGYRGLGLARRMLD 90 ++ + V YR G+ +L Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLH 112
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 60.8 bits (147), Expect = 2e-12 Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 35/163 (21%) Query: 118 LLTNNHVTAGADQIIVALR------------DGRETIAQLVGSDPETDLAVLKIDL---- 161 LLTN HV AL+ +G T Q+ E DLA++K Sbjct: 114 LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQN 173 Query: 162 ----KNLPAMTLGRSDGIRTGDVCLAIGNPFGVGQTVTMGIISATGRNQLGLNTYEDFIQ 217 + + T+ + + G P TM + G+ L +Q Sbjct: 174 KHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESKGK-ITYLKGE--AMQ 227 Query: 218 TDAAINPGNSGGALVDAAGNLIGINTAIFSKSGGSQGIGFAIP 260 D + GNSG + + +IGI+ G+ Sbjct: 228 YDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFN 261
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 28.3 bits (63), Expect = 0.046 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 14/90 (15%) Query: 94 GVAQG-INPFTHGSAKHTDVMKTEGLKQALDKYGFDAAFGGARRDEEKSRAKERVYSFRD 152 + P HGSAK G+ ++ F + + +++ F Sbjct: 207 RFHNCSLFPVYHGSAK-----NNIGIDNLIE--VITNKFYSS---THRGQSELCGKVF-- 254 Query: 153 SKHRWDPKNQRPELWNIYNGKVKKGESIRV 182 K + K QR +Y+G + +S+R+ Sbjct: 255 -KIEYSEKRQRLAYIRLYSGVLHLRDSVRI 283
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 71.4 bits (175), Expect = 5e-15 Identities = 54/150 (36%), Positives = 68/150 (45%), Gaps = 17/150 (11%) Query: 33 VDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKVGTTGDDVDLALLVDGLQAEREQGITI 92 VD GK+TL LL++S I E K T D+ L ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAITE------LGSVDKGTTRTDNTLL---------ERQRGITI 56 Query: 93 DVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARYGVQTQTRRHSFIA 152 F K I DTPGH + + S D AI+LI A+ GVQ QTR Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 153 SLLGIRHIVVAINKMDLKGFD-QGVFEQIK 181 +GI I INK+D G D V++ IK Sbjct: 117 RKMGIPTIFF-INKIDQNGIDLSTVYQDIK 145
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.8 bits (69), Expect = 0.004 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Query: 55 SARD--AGLA---TLRFNFRGVGQSAGSYGEGIGEIDDAEAA 91 SA+D AG A N +G+ Q++ + +GI E A Sbjct: 39 SAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTEGA 80
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 110 bits (276), Expect = 5e-30 Identities = 80/362 (22%), Positives = 129/362 (35%), Gaps = 68/362 (18%) Query: 1 MRILVTGATGFIGGRFARFALEQGLSVRV---------SGRRADAVEHLVARGAEFVPGD 51 M+ LVTGA GFIG ++ LE G V + +E L G +F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LADPALVVRLCED--VEAVVHCAGAVGV---WGPRERFLAANVGLAESVVEACMRQKVRR 106 LAD + L E V + V + +N+ +++E C K++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 107 LVHLSSPSIYFDGRDHLDLNEEYVPRRFSDHYGATKYQAEQLVLSARDL-GLEVLALRPR 165 L++ SS S+Y R + + + Y ATK E + + L GL LR Sbjct: 121 LLYASSSSVYGLNR-KMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR-F 178 Query: 166 FVV----GAGDTSIFPRMIQAHRKGR-LRILGNGLNRVDFTSVHNLNDALFSCL------ 214 F V G D ++F + +A +G+ + + G + DFT + ++ +A+ Sbjct: 179 FTVYGPWGRPDMALF-KFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 215 ------LAGEPALG----KVYNISNGQPVPFWDAVNYVMRQLDLPPVGGHLPYAVGYGLA 264 G PA +VYNI N PV D + + L + LP Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP-------- 289 Query: 265 ALNEGVCRILPGRPEPALFRLGMAVMAKNFTLDINRAREYLDYDPRVSLWTALDEFCAWW 324 +P A D E + + P ++ + F W+ Sbjct: 290 -------------LQPGDVLETSA--------DTKALYEVIGFTPETTVKDGVKNFVNWY 328 Query: 325 RA 326 R Sbjct: 329 RD 330
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.009 Identities = 22/111 (19%), Positives = 40/111 (36%) Query: 95 EEAAGRLDDIRGKVVASESSVTSEREALRLQVKQLQEKLGSQERQQADVSNQFGGQGKRL 154 E+A + A ++ +E+ AL + +L++ L S + Sbjct: 231 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 290 Query: 155 DQLASDLKAQQESAAQLVAQLDGKLQTLAAEQEKLKALQVELGKTNEQLKA 205 L ++ + + L A + L A +E K L+ E K EQ K Sbjct: 291 AALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 341
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 35.2 bits (81), Expect = 0.001 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 55/179 (30%) Query: 1 MTALTLGLIGNPNSGKTTLFNQL---TGSRQRVGNW-AGVTV------ERKEG------- 43 M + +G++ + ++GKTTL L +G+ +G+ G T ER+ G Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 44 -AFHTVRHAVRLVDLPGTYSLTSVSAQASLDEQIACRYIASGEVDVLVNVVDAANL---- 98 +F V ++D PG + EV ++V+D A L Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLA-------------------EVYRSLSVLDGAILLISA 101 Query: 99 -----ERNLYLTVQLREMGIPCIVALNMLDIARSQRIRIDIDGLAR----RLGCPVVPL 148 + L LR+MGIP I +N +D + ID+ + + +L +V Sbjct: 102 KDGVQAQTRILFHALRKMGIPTIFFINKID-----QNGIDLSTVYQDIKEKLSAEIVIK 155
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.9 bits (119), Expect = 8e-09 Identities = 32/155 (20%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 26 LPQVAGDLRVSIPSAGWLISGYAFAVAFGAPLMAMATARLERKKALLALMGIFIVGNLLC 85 LP +A D S W+ + + + G + + +L K+ LL + I G+++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 86 AVAANY-GLLMLARIVTALCHGAFFGIGSVVAASLVAPNRRASAVALMFTGLTLANVLGV 144 V ++ LL++AR + AF + VV A + R A L+ + + + +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 145 PLGTALGQEAGWRATFWVVTLIGVVAFVGLARVLP 179 +G + W ++ +I ++ L ++L Sbjct: 157 AIGGMIAHYIHWSYLL-LIPMITIITVPFLMKLLK 190
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.028 Identities = 25/209 (11%), Positives = 63/209 (30%), Gaps = 11/209 (5%) Query: 342 RFVERIHESIREVAGTARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQ 401 + +E + + L + + N + + +A I L A Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 402 EIARNAADASHHASDANHQ-AEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIG 460 +A + + A + I+ + ++A A++E +N Sbjct: 187 A-----LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 461 QILEVIKGISEQTN--LLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQESAQQIQKM 518 E L A A +E A A + +++ L + + Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALE-GAMNFSTADSAKIKTLEAEKAALEAEKADL 300 Query: 519 IEELQI--GAQEAVSTMTESQRYSLESVE 545 + Q+ ++++ ++ R + + +E Sbjct: 301 EHQSQVLNANRQSLRRDLDASREAKKQLE 329
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.1 bits (70), Expect = 0.018 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 308 GRAMQDIAQGEGDLTKRLAVTSRDEFGVLGDAFN---QFVERIHRSIREVAGTAHKLHDV 364 G ++ D+ + +L + ++ + F + + R + A KL Sbjct: 61 GSSLNDLVRTADELGIEVQYDEKNGTAITKQVFGTAEKLIGLTERGVTIFAPQLDKLLQK 120 Query: 365 SQLVVNASNSSMANSDEQSNRTNSVAAAI-NELGAAAQEIARNAADASHHASDANHQAED 423 Q N N + + + + N LG A + + + +E Sbjct: 121 YQKAGNILGGGAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSEL 180 Query: 424 GKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGIS 470 K +E N+L + +++ N+ + + + +G +L K ++ Sbjct: 181 AKASIELI----NQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLN 223
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.1 bits (70), Expect = 0.019 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 8/179 (4%) Query: 299 LIRVLMQPLTDMGRAMQDIAQGEGDLTKRLKVTSNDEFGTLANAFNRFVERIHESIREVA 358 LI ++ + G ++ D+ + +L ++ + F + I + R V Sbjct: 49 LILLIPKDYKGQGSSLNDLVRTADELGIEVQYDEKNGTAITKQVFGTAEKLIGLTERGVT 108 Query: 359 GTARQLHDVAQLVVNASN---SSMANSDEQSNRTNSVAAAI-NELGAAAQEIARNAADAS 414 A QL + Q A N N + + + + N LG A + + Sbjct: 109 IFAPQLDKLLQKYQKAGNILGGGAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKK 168 Query: 415 HHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGIS 473 + +E K +E N+L + +++ N+ + + + +G +L K ++ Sbjct: 169 QKSGGNVSSSELAKASIELI----NQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLN 223
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 146 bits (369), Expect = 2e-40 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 15/253 (5%) Query: 131 PNQVQTDIRFVEVSRSKLKQASTSFVRRGGNLWVLG------APGSLGDIKVNADGSGLG 184 QV + EV + + + + + G + N DG+ + Sbjct: 344 RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGT-VS 402 Query: 185 GTFGTGSSGFNLIFGG---GKWLSFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFP 241 + + S FN I G G W + AL S LA PS+V + A+F G E P Sbjct: 403 SSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVP 462 Query: 242 IPVP--NGTNDNV--TIEYKEFGIRLTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGV 297 + + DN+ T+E K GI+L + P + + L++ EVS + +A S + Sbjct: 463 VLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDL 522 Query: 298 AVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKD 357 R + +V++ GE+ V+ GL + DK P LGDIP++GA FRST Sbjct: 523 GA-TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVS 581 Query: 358 DRELLMIVTPHLV 370 R L++ + P ++ Sbjct: 582 KRNLMLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.002 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%) Query: 18 LQNSLASAG-QVVPAGSASLEELLALLDVTAAGVLFISL---GKSNLVSQGALVEGLVSA 73 L +L+ AG V +A L + ++ + ++ L+ + A Sbjct: 19 LNQALSRAGYDVRITSNA--ATLWRWIAAGDGDLVVTDVVMPDENAF----DLLPRIKKA 72 Query: 74 RPMLSVVAIGDGLDNQLVLAAMRAGARDFITYGARASELTGLIRR 118 RP L V+ + + A GA D++ +EL G+I R Sbjct: 73 RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 255 bits (653), Expect = 8e-77 Identities = 151/571 (26%), Positives = 257/571 (45%), Gaps = 50/571 (8%) Query: 230 PGNNTVVVTDYAENLDRVAGIIASIDIPSASD---TDVVPIQNGIAVDIASTVSELLDSQ 286 NN V+ +++ A +AS P D T VVP+ N A D+A + +L D+ Sbjct: 94 NMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQLNDNA 153 Query: 287 GSGGAEQGQKTVVLADPRSNSIVIRSPSPERTQLARDLIGKLDSVQSNPGNLHVVYLRNA 346 G G +VV +P SN +++ + +L ++ ++D+ ++ V L A Sbjct: 154 GVG-------SVVHYEP-SNVLLMTGRAAVIKRL-LTIVERVDNAGDR--SVVTVPLSWA 202 Query: 347 QATRLAQALRGLITGDSGGEGNE--------GDQQRARLSGGG---------MLGGGNSG 389 A + + + L S ++ A L G M+ + Sbjct: 203 SAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQ 262 Query: 390 TGSQGLGSSGNTTGSGSSGLGGSNRSGGAYGAMGSGQGGAGPGAMGEENSAFSAGGVTVQ 449 +QG + +S L Q A+ + + ++ Sbjct: 263 QATQGNTKVIYLKYAKASDLVEVLTGIS-STMQSEKQAAKPVAALDK--------NIIIK 313 Query: 450 ADATTNTLLISAPEPLYRNLREVIDLLDQRRAQVVIESLIVEVSEDDSSEFGIQWQAGNL 509 A TN L+++A + +L VI LD RR QV++E++I EV + D GIQW N Sbjct: 314 AHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNA 373 Query: 510 GGNGVFG-GVNFGQSALNTAGKNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALK 568 G G+ + N + L L G + + +L AL Sbjct: 374 GMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQG-NWAMLLTALS 432 Query: 569 SRGGTNVLSTPNLLTLDNESASIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKL 628 S ++L+TP+++TLDN A+ VGQ +P ++G T G N F T++R+ VG+KL Sbjct: 433 SSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGD----NIFNTVERKTVGIKL 488 Query: 629 NIRPQISEGGTVKLDVYQEVSSVDERASTAA---GVVTNKRAIDTSILLDDGQIMVLGGL 685 ++PQI+EG +V L++ QEVSSV + AS+ + G N R ++ ++L+ G+ +V+GGL Sbjct: 489 KVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGL 548 Query: 686 LQDNVQDNTDGVPGLSSLPGVGSLFRYQKRSRTKTNLMVFLRPYIVRDAAAGRSITLNRY 745 L +V D D VP L +P +G+LFR + +K NLM+F+RP ++RD R + +Y Sbjct: 549 LDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQY 608 Query: 746 DFIRRAQ-QRVQPRHDWSVGDMQAPVLPPAQ 775 AQ ++ ++ ++ + + P Q Sbjct: 609 TAFNDAQSKQRGKENNDAMLNQDLLEIYPRQ 639 Score = 160 bits (407), Expect = 2e-43 Identities = 75/278 (26%), Positives = 130/278 (46%), Gaps = 10/278 (3%) Query: 85 GAVAPVSAAAAELGEQPVSLNFVDTEVEAVVRALSRATGRQFLVDPRVKGKLTLVSEGQV 144 A+ AAA E S +F T+++ + +S+ + ++DP V+G +T+ S + Sbjct: 18 AALLFRPAAAEEF-----SASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 145 AARTAYRMLTSALRMQGFSVVDVD-GVSQVVPEADAKLLGGPVYGADRPA-ANGMVTRTF 202 Y+ S L + GF+V++++ GV +VV DAK PV P + +VTR Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVV 132 Query: 203 RLRYENAVNLIPVLRPIVAQNNPINA--YPGNNTVVVTDYAENLDRVAGIIASIDIPSAS 260 L A +L P+LR + + Y +N +++T A + R+ I+ +D Sbjct: 133 PLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDR 192 Query: 261 DTDVVPIQNGIAVDIASTVSELLDSQGSGGAEQGQKTVVLADPRSNSIVIRSPSPERTQL 320 VP+ A D+ V+EL V+AD R+N++++ P Q Sbjct: 193 SVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGE-PNSRQR 251 Query: 321 ARDLIGKLDSVQSNPGNLHVVYLRNAQATRLAQALRGL 358 +I +LD Q+ GN V+YL+ A+A+ L + L G+ Sbjct: 252 IIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGI 289 Score = 50.7 bits (121), Expect = 2e-08 Identities = 44/299 (14%), Positives = 103/299 (34%), Gaps = 56/299 (18%) Query: 194 ANGMVTRTFRLRYENAVNLIPVLRPI----------VAQNNPINAYPGNNTVVVTDYAEN 243 A T L + +A +++ ++ + + + A N V+V+ + Sbjct: 189 AGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNS 248 Query: 244 LDRVAGIIASIDIPSAS--DTDVVPIQNGIAVDIASTVSELL-----DSQGSGGAEQGQK 296 R+ +I +D A+ +T V+ ++ A D+ ++ + + Q + K Sbjct: 249 RQRIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDK 308 Query: 297 TV-VLADPRSNSIVIRSPSPERTQLARDLIGKLDSVQSNPGNLHVVYLRNAQATRLAQAL 355 + + A ++N++++ + P+ +I +LD +R Q + Sbjct: 309 NIIIKAHGQTNALIVTAA-PDVMNDLERVIAQLD-------------IRRPQV-----LV 349 Query: 356 RGLITGDSGGEGNEGDQQRARLSGGGMLG--GGNSGTGSQGLGSSGNTTGSGSSGLGGSN 413 +I +G LG N G +SG + +G N Sbjct: 350 EAIIAEVQDADGLN-------------LGIQWANKNAGMTQFTNSGLPISTAIAGANQYN 396 Query: 414 RSGGAYGAMGSGQGGAGPGAMGEENSAFSAGGVTVQA-DATTNTLLISAPEPLYRNLRE 471 + G ++ S A G + + + A ++T +++ P + + E Sbjct: 397 KDGTVSSSLASALSSFNGIAAGFYQGNW---AMLLTALSSSTKNDILATPSIVTLDNME 452 Score = 44.1 bits (104), Expect = 2e-06 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 16/84 (19%) Query: 190 DRPAANGMVTRTFRLRYENAVNLIPVLR----------------PIVAQNNPINAYPGNN 233 DR A T+ L+Y A +L+ VL + +N I A+ N Sbjct: 260 DRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTN 319 Query: 234 TVVVTDYAENLDRVAGIIASIDIP 257 ++VT + ++ + +IA +DI Sbjct: 320 ALIVTAAPDVMNDLERVIAQLDIR 343
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 380 bits (977), Expect = e-132 Identities = 188/407 (46%), Positives = 253/407 (62%), Gaps = 5/407 (1%) Query: 1 MQTFRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREQAGGGAGQGAGALFAP 60 M + Y+A DAQG+ GT EADS R A LR RGL PL V E G G+ L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R---LSDGDLAWATRQLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRL 117 R LS DLA TRQLA+L+AAS+PLE AL A Q+E+ H++Q ++AVRS V G L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 118 ADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERNALRGKILTAFIYPAVVG 177 ADA+ P F +Y A+VAAGE SG L V+ RLADY E+R +R +I A IYP V+ Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 178 VVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWG-WLCAGAIGGAYW 236 VV+I +V LL VVP+VV F +Q LP TR ++ SD VR +G W+ + G Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM- 239 Query: 237 GWRLYLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQ 296 +R+ LR + R+ +HRR+L LPL+GR G+NTAR+A TL+IL ++ VPLL+A+ + Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299 Query: 297 TLANDCLAQAVEEATAQVREGVSLASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQ 356 ++ND + AT VREGVSL AL +FPP++ H+IASGE++G L ML+RAA Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359 Query: 357 TLSRDIERRAMGMTALLEPLMIVVMGGVVLTIVMAVLMPIIEMNQLV 403 R+ + L EPL++V M VVL IV+A+L PI+++N L+ Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PF05043#Transcriptional activator Length = 493 Score = 29.9 bits (67), Expect = 0.010 Identities = 7/27 (25%), Positives = 16/27 (59%) Query: 47 YRYIKHTSKLIRRLGDSDLALQRNKVV 73 YR I +K+I+R +++L +++ Sbjct: 118 YRIISQINKVIKRQFQFEVSLTPVQII 144
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.044 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 99 LGFILSAALVGSCMAILYGARPIPAVVTASLL-----GIGLYWLFDRALDVPLPLGVL 151 +S +V C+A LY + IP V + + LF++ DV +G+L Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLL 931
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 28.8 bits (64), Expect = 0.028 Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 2 MMKLSFRPLALVAAGLLLAGAAVAEPKRPECIAPASPGGG 41 M K+ L+L+ +GLL+A A AEP P+ + S G G Sbjct: 1 MQKIKLTGLSLIISGLLMAQAQAAEPVYPDQLRLFSLGQG 40
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 8e-21 Identities = 35/127 (27%), Positives = 62/127 (48%) Query: 2 RILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGFE 61 IL+ +D + + QAL AG+ V + + +A+ + L + DV +P + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVL 121 +L R++ LPVL+++A+ + GA DYL KPF+L+EL + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 GGEQLQR 128 +L+ Sbjct: 125 RPSKLED 131
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 36.1 bits (83), Expect = 3e-05 Identities = 8/38 (21%), Positives = 20/38 (52%) Query: 107 NVNVVEEMADMISASRAFQTNAEMMNTAKQMMQKVLTL 144 VN+ EE ++ + + NA+++ TA + ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 29.5 bits (66), Expect = 0.004 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 4 ASVFNIAGSGMSAQSTRLNTVASNIANAETVSSSVDKTYRARHPVFSTMFQQAQ 57 +S+ N A SG++A LNT ++NI++ + T A ST+ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA--QANSTLGAGGW 52
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 44.9 bits (106), Expect = 5e-07 Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 414 ALQSGALEASNVDISNELVNLIVHQRNYQANAKTIQTEDAVTQTIINLR 462 L + S V++ E NL Q+ Y ANA+ +QT +A+ +IN+R Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 41.1 bits (96), Expect = 8e-06 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 2 SFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLL 61 N +SG+ AA + LN NNI++ G+ + A A S LG+G G+GV + Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQ--ANSTLGAGGW-VGNGVYV 59 Query: 62 SDVSQMFKQ 70 S V + + Sbjct: 60 SGVQREYDA 68
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 44.6 bits (105), Expect = 2e-07 Identities = 13/51 (25%), Positives = 25/51 (49%) Query: 209 NGLGTVAQNTLENSNVNVVEELVNMITTQRAYEMNSKVISTADQMLSFVTQ 259 N + ++ S VN+ EE N+ Q+ Y N++V+ TA+ + + Sbjct: 494 NVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 39.6 bits (92), Expect = 9e-06 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 14/79 (17%) Query: 3 SALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDSEL 62 S + + +GL+A L T SNN+++ + G+ R + +S L Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI--------------MAQANSTL 47 Query: 63 PSGLQLGTGVRVVGTQKIF 81 +G +G GV V G Q+ + Sbjct: 48 GAGGWVGNGVYVSGVQREY 66
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 180 bits (459), Expect = 3e-59 Identities = 81/224 (36%), Positives = 112/224 (50%), Gaps = 13/224 (5%) Query: 12 IATALGGCVNPPPKPNDPYYAPVLPRTPLPAAQNNGAIYQAGF-----EQNLYDDRKAFR 66 + +L GC P P P P P NG+I+Q+ Q L++DR+ Sbjct: 15 LVLSLTGCAWIPSTPLVQGATSAQP-VPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRN 73 Query: 67 VGDIITITLNEKTQASKKANSDIQKDSKTKMGLTSLFGSGMTTNNPIGGGDLSLSAEYGG 126 +GD +TI L E ASK ++++ +D KT G + G + E G Sbjct: 74 IGDTLTIVLQENVSASKSSSANASRDGKTNFGFDT---VPRYLQGLFGNARADV--EASG 128 Query: 127 SRDAKGDSQAGQSNSLTGSITVTVAEVLPNGILSVRGEKWMTLNTGNELVRIAGLVRADD 186 G A SN+ +G++TVTV +VL NG L V GEK + +N G E +R +G+V Sbjct: 129 GNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRT 188 Query: 187 IATDNTVSSTRVADARITYSGTGAFADASQPGWLDRFF--LSPL 228 I+ NTV ST+VADARI Y G G +A GWL RFF LSP+ Sbjct: 189 ISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 436 bits (1122), Expect = e-155 Identities = 168/366 (45%), Positives = 224/366 (61%), Gaps = 10/366 (2%) Query: 7 LLALAALLLAAGAAQAERLKDIASIQGVRTNQLIGYGLVVGLSGSGDQTTQTPFTLQTFN 66 AL L A R+KDIAS+Q R NQLIGYGLVVGL G+GD +PFT Q+ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 67 NMLAQFGIKVPANVGNVQLKNVAAVSVHADLPPFAKPGQPIDVTVSSIGNAKSLRGGSLL 126 ML GI G KN+AAV V A+LPPFA PG +DVTVSS+G+A SLRGG+L+ Sbjct: 73 AMLQNLGITTQG--GQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 127 MTPLKGIDGQVYAVAQGNLVVGGFDAEGRDGSKITVNVPSAGRIPAGATVERAVPSGFDQ 186 MT L G DGQ+YAVAQG L+V GF A+G D + +T V ++ R+P GA +ER +PS F Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKD 189 Query: 187 GNSLTLNLNRPDFTTAKRIVDRINEL----LGPGVAHAVDGGSVRVSAPLDPNQRVDYLS 242 +L L L PDF+TA R+ D +N G +A D + V P ++ Sbjct: 190 SVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKP-RVADLTRLMA 248 Query: 243 ILENLDVQPGEAVAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVSITEDPIVSQPGAFS 302 +ENL V+ + AKV+IN RTGTIVIG +V++S AV++G+LTV +TE P V QP FS Sbjct: 249 EIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFS 307 Query: 303 NGQTAVVPRSRVNAEEETKPMFKFGPGTTLDDIVRAVNQVGAAPSDLMAILEALKQAGAL 362 GQTAV P++ + A +E + G L +V +N +G ++AIL+ +K AGAL Sbjct: 308 RGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGAL 366 Query: 363 QADLIV 368 QA+L++ Sbjct: 367 QAELVL 372
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 148 bits (374), Expect = 1e-43 Identities = 79/195 (40%), Positives = 114/195 (58%), Gaps = 7/195 (3%) Query: 198 LPAQSYPAASRRGFSTDGVDSQGSRRIAQP-----PLARGKSMFASADEFIATMLPMAQK 252 LP +S PAA F + V ++ ++Q P S+ + F+A + AQ Sbjct: 104 LPEESTPAA-PMKFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQL 162 Query: 253 AAERIGVDARYLVAQAALETGWGKSIIRQQDGGSSHNLFGIKTGSRWDGASARALTTEYE 312 A+++ GV ++AQAALE+GWG+ IR+++G S+NLFG+K W G TTEYE Sbjct: 163 ASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYE 222 Query: 313 GGKAVKEVAAFRSYSSFEQSFHDYVSFLQGNDRYQNALDSAANPERFMQELQRAGYATDP 372 G+A K A FR YSS+ ++ DYV L N RY A+ +AA+ E+ Q LQ AGYATDP Sbjct: 223 NGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYA-AVTTAASAEQGAQALQDAGYATDP 281 Query: 373 QYARKVAQIARQMQT 387 YARK+ + +QM++ Sbjct: 282 HYARKLTNMIQQMKS 296 Score = 68.2 bits (166), Expect = 7e-15 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 10/160 (6%) Query: 20 DLNRLNQLKVGKDRDGEANIRKVAQEFESLFLNEMLKSMRSANEALGDGNFMNSQTTKQY 79 D LN+LK D ANIR VA++ E +F+ MLKSMR +AL +S+ T+ Y Sbjct: 14 DAQSLNELKAKAGEDPAANIRPVARQVEGMFVQMMLKSMR---DALPKDGLFSSEHTRLY 70 Query: 80 QDMYDQQLSVSLSKNAGGIGLADVLVRQLSKMKQGSRGNGENPFARVAENGAGRWPSNPS 139 MYDQQ++ ++ G+GLA+++V+Q++ + + + R+ + Sbjct: 71 TSMYDQQIAQQMT-AGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQAL 129 Query: 140 AQAGKALPMPEAGRDDSKLLNQR----RLALPGKLAERML 175 +Q DDS + + +L+LP +LA + Sbjct: 130 SQL--VQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQS 167
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 244 bits (625), Expect = 8e-75 Identities = 142/469 (30%), Positives = 236/469 (50%), Gaps = 23/469 (4%) Query: 2 SDLLSIGLSGLGTSQTWLTITGHNITNVKTPGYSRQDAIQQTQVPQFSGAGYMGSGSQIV 61 S L++ +SGL +Q L +NI++ GY+RQ I G++G+G + Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 62 DVRRLASDFLTGQLRNATSQNSELSAFRSQIEQLDGLLSNTTTGVSPAMQRFFAALQAAA 121 V+R F+T QLR A +Q+S L+A Q+ ++D +LS +T+ ++ MQ FF +LQ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 122 NNPSSTEAREAVLAQAEGLGKTFNTLYDQLDKQNSLINQQLGALASQVNHLSQSVASYND 181 +N AR+A++ ++EGL F T L Q+ +N +GA Q+N+ ++ +AS ND Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 182 AIAK--AKSAGAVPNDLMDARDEAVRKLSEMIGVTAVTQDDNSVSLFIGSGQPLVVGNTV 239 I++ AGA PN+L+D RD+ V +L++++GV QD + ++ + +G LV G+T Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 240 STLSVVPGLDDPTRYQVQLSNG--NSIQNVTGLVSGGEMGGLLAYRNSALDSSYNKLGQL 297 L+ VP DP+R V +G +I+ L++ G +GG+L +R+ LD + N LGQL Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300 Query: 298 AITLADTINKQLGQGLDLAGKAGANLFGDINDPDITALRVLAKNGNTGNVHANLNITDTS 357 A+ A+ N Q G D G AG + F I VL N G+V +TD S Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFF------AIGKPAVLQNTKNKGDVAIGATVTDAS 354 Query: 358 KLNSSDFRLDFDGTSFTARRLGDDASMQVTVSGTGPYTLSFKDANGVDQGFNLTLDQLPA 417 + ++D+++ FD + RL + + VT + G LT PA Sbjct: 355 AVLATDYKISFDNNQWQVTRLASNTTFTVT---------PDANGKVAFDGLELTFTGTPA 405 Query: 418 AGDRFTLQPTRRGAADIEATLKNASQLAFAGTARTESTTENRGTGKIGA 466 D FTL+P +++ + + +++A +E + A Sbjct: 406 VNDSFTLKPVSDAIVNMDVLITDEAKIA----MASEEDAGDSDNRNGQA 450 Score = 83.9 bits (207), Expect = 6e-19 Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 3/111 (2%) Query: 569 FNDKGISDNRNALNLLALQTKPTVGGTDNTGSTYNEAYGGLVERVGTLTAQVRASSEASA 628 D G SDNRN LL LQ+ G ++N+AY LV +G TA ++ SS Sbjct: 437 EEDAGDSDNRNGQALLDLQSNSKTVGGA---KSFNDAYASLVSDIGNKTATLKTSSATQG 493 Query: 629 TVLKQAQDSRDSLSGVSLDEEAANLIQFQQYYGASAQVIQVARTLFDTLIG 679 V+ Q + + S+SGV+LDEE NL +FQQYY A+AQV+Q A +FD LI Sbjct: 494 NVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLAGELLIN#Flagellin signature. Length = 507 Score = 55.1 bits (132), Expect = 3e-10 Identities = 62/369 (16%), Positives = 122/369 (33%), Gaps = 14/369 (3%) Query: 1 MRISTIQAFNNSVNGISRNYADLNRTFEQISTGKRILTPADDPVGSVRLLRLD-QEQGLN 59 I+T + N ++++ + L+ E++S+G RI + DD G R +GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 60 EQYKTGMTEAKNSLSQEETILRSVGNVLQRIREIAGQAGDGALDSNDKKSLASELRQRED 119 Q + + E L + N LQR+RE++ QA +G +D KS+ E++QR + Sbjct: 62 -QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 120 ELLNLLNSRDASGKYLFSGSQGSVQPFVRNEDGTYSYMGDESQREVQIASSTRIPVSDSG 179 E+ + N +G + S N+ T + + V+ V+ Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKID--VKSLGLDGFNVNGPK 178 Query: 180 KVLFEDIVNAARLDTKAAAGNTGDGRISVGLVEDELAFDSQFPASNPPAATDGFNIHFVS 239 + D+ ++ + T G + V + + D+ P + N + Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238 Query: 240 DKEYVVYDPKSLPPGYDWTTYDPNSPPAWQLSKGAIDDDPKTIDKVLYAGVSVTIDGTPK 299 D T + A + K D Y GV+ TID Sbjct: 239 DDAENNTAVDLF------KTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTG 292 Query: 300 AGDEFNVNYKPGSEKRSLLNVVSDLRKALESSTDNQAGNDAIRDATAVALTNLSAVAAAV 359 V+ + ++ ++ + A + ++ + Sbjct: 293 NDGNGKVS----TTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 360 DGGQGKIGA 368 K+ Sbjct: 349 KNESAKLSD 357 Score = 37.3 bits (86), Expect = 1e-04 Identities = 24/94 (25%), Positives = 40/94 (42%) Query: 326 KALESSTDNQAGNDAIRDATAVALTNLSAVAAAVDGGQGKIGARLNTVESTETFIDDVKL 385 A ST A + +TA L ++ + + VD + +GA N +S T + + Sbjct: 398 TASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVT 457 Query: 386 VNASVMSQIQDLDYAEALSRLSLQSTIMDAAQQS 419 S S+I+D DYA +S +S + A Sbjct: 458 NLNSARSRIEDADYATEVSNMSKAQILQQAGTSV 491
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (270), Expect = 2e-30 Identities = 68/260 (26%), Positives = 133/260 (51%), Gaps = 13/260 (5%) Query: 7 FNPFSLSGRRILVTGASSGLGLAIAQSCARMGAELIVTGRDQTRLDGCLTTLQSISELPH 66 N + G+ +TGA+ G+G A+A++ A GA + + +L+ +++L++ + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 67 RAVQADLRVAEERAAVVAAVDSEIHG---LVHSAGISRLCPVRMMTEAHLHEVQSINVDS 123 A AD+R + + A ++ E+ LV+ AG+ R + +++ S+N Sbjct: 61 -AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTG 119 Query: 124 PMLLTQALLKRNLVAPGGSILFIASIAAHIGVAGVGAYSGTKAALIAMSRCLAMEVVKRN 183 ++++ K + GSI+ + S A + + AY+ +KAA + ++CL +E+ + N Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 184 IRVNCLSPSLVETPLL-------DAATQTV-GSMDGQRSNHPMG-FGKPEDIANAAIFML 234 IR N +SP ET + + A Q + GS++ ++ P+ KP DIA+A +F++ Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 235 SDASRWVTGTTLVMDGGLTI 254 S + +T L +DGG T+ Sbjct: 240 SGQAGHITMHNLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 510 bits (1314), Expect = 0.0 Identities = 181/489 (37%), Positives = 256/489 (52%), Gaps = 14/489 (2%) Query: 5 TKLLLIDDNLDRSRDLAVILNFLGEDQLTCNS--EDWREVAAGLSNSREALCVLLGSVES 62 +L+ DD+ L L+ G D ++ WR +AAG + V+ V Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD-----LVVTDVVMP 58 Query: 63 KGGAVELLKQLASWDEYLPILLI-GEPAPADWPEELRRRVLASLEMPPSYNKLLDSLHRA 121 A +LL ++ LP+L++ + + + L P +L+ + RA Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 122 QVYREMYDQARERGRSREPNLFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKE 181 + R + LVG S A+Q++ +++ ++ TD +++I GESGTGKE Sbjct: 119 LAEP----KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKE 174 Query: 182 VVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGT 241 +VAR LH + KRR GPFV +N AIP +L+ESELFGHEKGAFTGA T GRFE A GGT Sbjct: 175 LVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGT 234 Query: 242 LFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFRE 301 LFLDEIGDMP+ Q +LLRVLQ+ + VG DVRI+AAT+K+L++ I G FRE Sbjct: 235 LFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRE 294 Query: 302 DLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIRFNSAAIMSLCRHDWPGN 361 DLYYRLNV P+ + PLR+R EDI L+ + + E E RF+ A+ + H WPGN Sbjct: 295 DLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGN 354 Query: 362 VRELANLVERLAIMHPYGVIGVGELPKKFR-HVDDEDEQLASSLREELEERAAINAGLPG 420 VREL NLV RL ++P VI + + R + D + A++ L A+ + Sbjct: 355 VRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 421 MDAPAM-LPAEGLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRKYG 479 A LA +E LI AL G +AA+ L + R TL +K+R+ G Sbjct: 415 YFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474 Query: 480 MSRRDDDLS 488 +S S Sbjct: 475 VSVYRSSRS 483
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 1e-04 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 19/97 (19%) Query: 299 LVENA----IQACGPELRLKVHLYARADSLRLSVSDNGPGMDPATLARLGEPFFTTKTTG 354 LVEN I ++ + ++ L V + G T Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT------------KES 310 Query: 355 TGLGLAVVKAVARAHQG---QLQLRSRPGRGTCATLI 388 TG GL V+ + G Q++L + G+ LI Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 505 bits (1302), Expect = e-179 Identities = 173/482 (35%), Positives = 255/482 (52%), Gaps = 18/482 (3%) Query: 2 AAKVLLVEDDRALREALSDTLLLGGHEFVAVDSAEAALPVLAREAFSLVISDVNMPGMDG 61 A +L+ +DD A+R L+ L G++ +A +A LV++DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 HQLLGLIRTRYPHLPVLLMTAYGAVDRAVEAMRQGAADYLVKPF--------EARALLDL 113 LL I+ P LPVL+M+A A++A +GA DYL KPF RAL + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 114 VARHALGQLPGSEEDGPVALEPASRQLLELAARVARSDSTVLISGESGTGKEVLANYIHQ 173 R + + + V A +++ + AR+ ++D T++I+GESGTGKE++A +H Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD 182 Query: 174 QSPRAGKPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQPGKFELADGGTILLDEISE 233 R PF+AIN AAIP +++E+ LFGHEKG+FTGA G+FE A+GGT+ LDEI + Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242 Query: 234 MPLGLQAKLLRVLQEREVERVGARKPINLDIRVLATTNRDLAAEVAAGRFREDLYYRLSV 293 MP+ Q +LLRVLQ+ E VG R PI D+R++A TN+DL + G FREDLYYRL+V Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 294 FPLAWRPLRERPADILPLAERLLRKHSRKMNLGAVALGPEAAQCLVRHAWPGNVRELDNA 353 PL PLR+R DI L +++ + K L EA + + H WPGNVREL+N Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 354 IQRALILQQGGLIQPADLCLTAPIGMPLAAPAPVPMPAIPPATPPSVE------IPSPAA 407 ++R L +I + +P + + + +VE S Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 408 GQDASGALGDDLRRREFQVIIDTLRTERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVE 467 SG L E+ +I+ L RG + +AA+ LG++ TLR K +R+ G+ V Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK---IRELGVSVY 478 Query: 468 AY 469 Sbjct: 479 RS 480
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 91.6 bits (227), Expect = 9e-28 Identities = 41/92 (44%), Positives = 55/92 (59%) Query: 18 QMEAMAKAKPVQAPAEAGAPSFSEMLSQAVDKVNETQQASTAMANAFEVGQSGVDLTDVM 77 Q++A A + Q SF+ L A+D++++TQ A+ A F +G+ GV L DVM Sbjct: 12 QLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVM 71 Query: 78 IASQKASVSFQAMTQVRNKLVQAYQDIMQMPV 109 QKASVS Q QVRNKLV AYQ++M M V Sbjct: 72 TDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 608 bits (1569), Expect = 0.0 Identities = 206/576 (35%), Positives = 311/576 (53%), Gaps = 39/576 (6%) Query: 30 LDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAA 89 L+ L+ + +I L+V +A+VAI A+VLW++ PDY+ L+ +L+ D +V LT Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 90 DIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATN 149 +IPY+ SGA+ V AD + R+++A G+ P VGFE+LD+E G SQF E N Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGL-PKGGAVGFELLDQE-KFGISQFSEQVN 130 Query: 150 YRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPSQV 209 Y+R LEGELART+ +L VK+ARVHLA+PK S+FVR+ + PSASV V L PGR+L+ Q+ Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 210 MAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQRVH 269 A+V+LV+++V L VT+VDQ G+LL+ Q S + Q F +E + +R+ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLT-QSNTSGRDLNDAQLKFANDVESRIQRRIE 249 Query: 270 NILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPA----LRSEQRNNEERQNSSGPQ 325 IL P++GNG A+V+A +DF+ E T E Y+P+ A LRS Q N E+ + P Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 GVPGALSNQP P AP + P P N Q T + P Sbjct: 310 GVPGALSNQPAPPNEAP----IATP--------PTNQQNAQNTPQTSTSTNSNSAGPRST 357 Query: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 + T NYE+DR+I +TK G + RLSVAVV++ + D K P +AD++ + Sbjct: 358 QRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKP-----LPLTADQMKQIE 412 Query: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPFYSQPWFWDIVKQVLGVLFILVLV 505 L ++++G+ RGD+++V+N+PF A +PF+ Q F D + L +LV+ Sbjct: 413 DLTREAMGFSDKRGDTLNVVNSPF-SAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVA 471 Query: 506 F----GVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILL 561 + +RP L+ K ++ E +E L+ D ++ L Sbjct: 472 WILWRKAVRPQLTRRVEEAKAAQEQAQVRQE-----TEEAVEVRLSKDEQLQQRRANQRL 526 Query: 562 PSPTEGYDAQLNAIKNLVAQDPGRVAQVVKEWINAD 597 G + I+ + DP VA V+++W++ D Sbjct: 527 -----GAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 305 bits (784), Expect = e-105 Identities = 109/330 (33%), Positives = 204/330 (61%) Query: 9 KLTKVDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMASMRNVHREQVEQVMGEFVEV 68 LT KAAILL+S+G +++V +++ +E++ + +A + + E + V+ EF E+ Sbjct: 14 ALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKEL 73 Query: 69 VGDQTSLGVGADGYIRKMLTQALGEDKANNLIDRILLGGSTSGLDSLKWMEPRAVADVIR 128 + Q + G Y R++L ++LG KA ++I+ + + + ++ +P + + I+ Sbjct: 74 MMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQ 133 Query: 129 YEHPQIQAIVVAYLDPDQAAEVLSHFDHKVRLDIVLRVSSLNTVQPSALKELNLILEKQF 188 EHPQ A++++YLDP +A+ +LS +V+ ++ R++ ++ P ++E+ +LEK+ Sbjct: 134 QEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKL 193 Query: 189 AGNSNATRTTMGGVKRAADIMNYLDSSIEGQLMDSIREVDEDLSGQIEDLMFVFDNLADV 248 A S+ T+ GGV +I+N D E +++S+ E D +L+ +I+ MFVF+++ + Sbjct: 194 ASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLL 253 Query: 249 DDRGIQALLREVSSDVLVLALKGSDEAIREKVFKNMSKRAAELLRDDLEAKGPVRVSEVE 308 DDR IQ +LRE+ L ALK D ++EK+FKNMSKRAA +L++D+E GP R +VE Sbjct: 254 DDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVE 313 Query: 309 GAQKEILTIARRMAESGDIVLGGKGGEEMI 338 +Q++I+++ R++ E G+IV+ G E+++ Sbjct: 314 ESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 56.3 bits (135), Expect = 1e-11 Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 11/202 (5%) Query: 40 VAAPQVPAVAEPAPAPPAVEEVELETVKPPTLEEIEAIRQDAYNEGFATGERDGFHAGQL 99 +A PQ V P +EE E + +++A Q Y G A G + G G Sbjct: 15 LAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQ-GYQAGIAEGRQQGHKQGYQ 73 Query: 100 KARQEAEEALKERLQS--------LERLMTQLLEPIAEQDALIEQGMVNLVNHVARQVIQ 151 + + E +S +++L+++ + D++I ++ + ARQVI Sbjct: 74 EGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIG 133 Query: 152 RELHMDSSHVRQVLREALKLLPMGAANIRIHVNPQDFERVKAL--RERHEESWRILEDDS 209 + +D+S + + +++ L+ P+ + ++ V+P D +RV + WR+ D + Sbjct: 134 QTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPT 193 Query: 210 LLPGGCRIETEHSRIDATIETR 231 L PGGC++ + +DA++ TR Sbjct: 194 LHPGGCKVSADEGDLDASVATR 215
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 54.4 bits (130), Expect = 2e-12 Identities = 46/134 (34%), Positives = 74/134 (55%) Query: 8 LAPVVDMASKAERDAATQLGRCQQQLLAAQQKLAELERYRNDYQQQWISQGQKGVSGQWL 67 LA + D+A K DAA LG ++ A+++L L Y+N+Y+ S G++ Sbjct: 7 LATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRW 66 Query: 68 MNYQRFLSQLETAVAQQANSVTWHREAVDKARLNWQERYARLEGLRKLVERYLEEARQAE 127 +NYQ+F+ LE A+ Q + + VD A +W+E+ RL+ + L ER A AE Sbjct: 67 INYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAE 126 Query: 128 DKREQKQLDELAQR 141 ++ +QK++DE AQR Sbjct: 127 NRLDQKKMDEFAQR 140
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.1 bits (138), Expect = 4e-11 Identities = 82/337 (24%), Positives = 125/337 (37%), Gaps = 34/337 (10%) Query: 4 RPRPPLLLVLALLALPQVAETILSPALPALASHWRLDDATSQWT------MALFFVGFAP 57 +P PL+++L+ +AL V ++ P LP L + + AL AP Sbjct: 2 KPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAP 61 Query: 58 GIWLWGWLADRLGRRPALLGGLGLAALATFGAWASTDYSYLLACRLVQGLGLATCSVTVQ 117 + G L+DR GRRP LL L AA+ + L R+V G+ AT +V Sbjct: 62 ---VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV-AG 117 Query: 118 ASLRDVLQGPALMSYFVTLGAVLAWSPAVGPLGGQWLADLGGH-PAVFATLAVLLASLAA 176 A + D+ G +F + A + GP+ G + H P A L L Sbjct: 118 AYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTG 177 Query: 177 LVV---PAWPETRPLLAGTPEPATLAIFRRVLADRPLQTRALLVAVLNVLVFSFYAAGPF 233 + E RPL P FR + + V + LV AA Sbjct: 178 CFLLPESHKGERRPLRREALNPLAS--FRWARGMTVVAA-LMAVFFIMQLVGQVPAALWV 234 Query: 234 MVGDLPGLGFGW----IGLAIAIAGSLGAL----LNRRLPRTWNSARRVRLGLALAAAGA 285 + G+ F W IG+++A G L +L + + R + LG+ A Sbjct: 235 IFGEDR---FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGM---IADG 288 Query: 286 TAQTLLAAVGYAEGLYWALPALPIFIGFGVAIPNLLG 322 T LLA + A P + + G+ +P L Sbjct: 289 TGYILLAFATRG---WMAFPIMVLLASGGIGMPALQA 322
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 30.6 bits (69), Expect = 0.024 Identities = 7/32 (21%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 430 YNEPPELLKQTLDALARLDYPDYEVLVIDNNT 461 + P +++Q + ++ + + D++V++ID N Sbjct: 79 IEKAPYIVQQCVASV-KKNSGDFKVIIIDGNN 109
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 30.0 bits (67), Expect = 0.009 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 3/51 (5%) Query: 109 MAEYIVDF--DYLIDCIDSVAAKAALIAWCKRRKIPVITTGGAGGQVDPTQ 157 M Y VD + A L C + IPV+ T G Q +P Sbjct: 38 MQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQ-NPDD 87
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 88.5 bits (219), Expect = 2e-23 Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 12/200 (6%) Query: 15 LDDRWPLPVALPGVQLRSTRFDPALLQPGDFALAGIQPPANILRAVAKRQAEFLAGRLCA 74 L +PLP A G +L FD + + D L + + A KR+AE LAGR+ A Sbjct: 2 LTSHFPLPFA--GHRLHIVDFDASSFREHD--LLWLPHHDRLRSAGRKRKAEHLAGRIAA 57 Query: 75 RAALFALDGRAQTPAVGEDRAPVWPAAISGSITHGDRWAAALVAARGDWRGLGLDVETLL 134 AL + G P +G+ R P+WP + GSI+H A A+++ + +G+D+E ++ Sbjct: 58 VHALREV-GVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISR----QRIGIDIEKIM 112 Query: 135 EAERARYLHGEILTEGERLRFADDLERRTGLLVTLAFSLKESLFKALYPLVGKRFYFEHA 194 A L I+ ER L L +TLAFS KES++KA + F A Sbjct: 113 SQHTATELAPSIIDSDERQILQASL-LPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSA 170 Query: 195 ELLEWRADGQARLRLLTDLS 214 ++ A L LL + Sbjct: 171 KVTSLTA-THISLHLLPAFA 189
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 88.4 bits (219), Expect = 3e-21 Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 51/293 (17%) Query: 256 VRIGVIERDVDFDAPDFADYLGPCKAPAPRTCLYARDAERPDNHGSTVAGILAARWDQGG 315 V++ V++ D D PD + + + + HG+ VAG +AA Sbjct: 43 VKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAA----TE 98 Query: 316 NSGFLRGLDRASQGFEVIVERNSDAGITANVAASVN-LVEDGVRVLNWSWGIHRVGARDV 374 N + G+ + + V +G + + +E V +++ S G Sbjct: 99 NENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLG------GPE 152 Query: 375 DGDEVDSLVRSGIAMSGYEELLEEFFLWLRKEHPDVLVVNSAGN-GSSYSGTDEYRLPSS 433 D E+ V+ +A +LV+ +AGN G TDE P Sbjct: 153 DVPELHEAVKKAVA-------------------SQILVMCAAGNEGDGDDRTDELGYPGC 193 Query: 434 FVTEQLLVVGGHQRSERQGLAVDDPAYAVKRSTSNVDMRVDVTAAACTHASTLERDARGE 493 + +++ VG A++ +A SN + VD+ A ST+ + Sbjct: 194 Y--NEVISVG----------AINFDRHAS--EFSNSNNEVDLVAPGEDILSTV-PGGKYA 238 Query: 494 VHCGTSYATPMVAGTVAAMLSLNPRLR-----PEEIRMLLRRSAMTIGGDYDF 541 GTS ATP VAG +A + L E+ L + + +G Sbjct: 239 TFSGTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKM 291
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 8e-18 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 742 THVLLVDDNRMVRYTTALLLGDLGYQVSEAASAEEALGEVERGLAPDLLVTDHLMADKTG 801 +L+ DD+ +R L GY V ++A + G DL+VTD +M D+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDENA 62 Query: 802 VQLAEELRQRFPQLPVLVITGYANL----RPEQLNGFEVLTKPFRHNELAERLARLLEA 856 L +++ P LPVLV++ + + ++ L KPF EL + R L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 436 bits (1122), Expect = e-153 Identities = 99/423 (23%), Positives = 182/423 (43%), Gaps = 2/423 (0%) Query: 11 AYARLGWLLVLFGFGGALLWAAFAPLDQGVAVPATVIISGQRKSVQHPLGGVVKHILVRD 70 RL ++ A + + ++ + SG+ K ++ +VK I+V++ Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 71 GQHVEAGEPLIRMEPTQARANVDSLLNRYANARLNQARLQAEYDGRRTLEMPA-GLAEQA 129 G+ V G+ L+++ A A+ + ARL Q R Q ++P L ++ Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 130 PLPTLGERLEL-QRQLLRSRQTALANELSALRANIEGLRAQLEGLRQTEGNQRLQQRLLN 188 + E L L++ + + N+ N++ RA+ + R+ Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 189 SQLSGARDLAEEGYMPRNQLLEQERQLAEVNARLSESSGRFGQIRQSIAEAQMRIAQREE 248 S+L L + + ++ +LEQE + E L + QI I A+ + Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 249 EYRKEVNGQLAETQVNARTLWEELSSARYELRHAEIRAPVSGYVAGLKVFTDGGVIGPGE 308 ++ E+ +L +T N L EL+ + + IRAPVS V LKV T+GGV+ E Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Query: 309 LLMYIVPNSDSLEVEGQLAVNLVDRIHSGLPVEMLFTAFNQSKTPRVTGEVTMVSADRLL 368 LM IVP D+LEV + + I+ G + AF ++ + G+V ++ D + Sbjct: 355 TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIE 414 Query: 369 DEQNKQPYYALRAQVDAATMGKLKGLQIRPGMAVQVFVRTGERSLLNYLFKPLFDRAHVA 428 D++ + + + + K + + GMAV ++TG RS+++YL PL + + Sbjct: 415 DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTES 474 Query: 429 LAE 431 L E Sbjct: 475 LRE 477
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 418 bits (1075), Expect = e-145 Identities = 254/480 (52%), Positives = 319/480 (66%), Gaps = 29/480 (6%) Query: 10 GRSDAYTQVDNFLHAYARGGDELVNGHPSYTVDQAAEQILREQASWQKAPGDSVLTLSYS 69 S AY V +FL + RG VNG SY++DQAA QI RE SW G +V S + Sbjct: 19 NTSSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAAAQITRENVSWN---GTNVFGKSAN 75 Query: 70 FLTKPNDFFSTPWKYVSDIYSLGK----FSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQ 125 +K++ + S+ F F+A+Q QAKLSLQSWSDV N+ F + Sbjct: 76 ----------LTFKFLQSVSSIPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTG 125 Query: 126 GDQGDLTFGNFSSSVGG------AAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYG 179 ++TFGN++ G A+A+ P G SWY N S NP + YG Sbjct: 126 NKSANITFGNYTRDASGNLDYGTQAYAYYPGNYQG-AGSSWYNYNQSN--IRNPGSEEYG 182 Query: 180 RQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMSYWEEQNTGQDFKGAY 239 RQT THEIGH LGL+HPG+YNAGEGDP+Y DA YAED+ +S+MSYW E TG D+ G Y Sbjct: 183 RQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNGHY 242 Query: 240 SSAPLLDDIAAIQKLYGANLTTRTGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGND 299 AP++DDIAAIQ+LYGAN+TTRTGD+VYGFNSNT+RDFY+AT SS L+FSVWDAGG D Sbjct: 243 GGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTD 302 Query: 300 TLDFSGFSQNQKINLNEKALSDVGGLKGNVSIAAGVTVENAIGGSGSDLLIGNDVANVLK 359 T DFSG+S NQ+INLNE + SDVGGLKGNVSIA GVT+ENAIGGSG+D+L+GN N+L+ Sbjct: 303 TFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQ 362 Query: 360 GGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRDFVSGQDKIDLSGLDAF 419 GGAGND+LYGG GAD L+GGAG DTFVYG +S+ AA D + DF G DKIDLS AF Sbjct: 363 GGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLS---AF 419 Query: 420 VNGGLVLQYVDAFAGKAGQAILSYDAASKAGSLAIDFSGDAHADFAINLIGQATQADIVV 479 N G + D F GK + +L +DAA+ +L + +G + DF + ++GQA Q+DI+V Sbjct: 420 RNEGQLSFVQDQFTGKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQAAQSDIIV 479
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.3 bits (94), Expect = 5e-07 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 12/84 (14%) Query: 63 GFIGLNQ-----AHVEMLFVEPGLRGRGIGRRLLDHARATWPR------LSVDVNEQNPQ 111 G I + A +E + V R +G+G LL A W + L ++ + N Sbjct: 78 GRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKA-IEWAKENHFCGLMLETQDINIS 136 Query: 112 ACGFYRHYGFRQTGRSATDSAGRP 135 AC FY + F + P Sbjct: 137 ACHFYAKHHFIIGAVDTMLYSNFP 160
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 153 bits (387), Expect = 5e-49 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%) Query: 14 KLLGEMHKLRAQVFKERKGWDVSVIDEMEIDGYDALSPYYMLIQEDTPEAQVFGCWRILD 73 GE+ LR + FK+R W V D ME D YD + Y+ +D V R ++ Sbjct: 15 TKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKDN---TVICSLRFIE 71 Query: 74 TTGPYMLKNTFPELLHGKEAPCSPHIWELSRFAINSGQKGSLGFSDCTLEAMRALARYSL 133 T P M+ TF P + E SRF ++ + + ++ + +M L+ + Sbjct: 72 TKYPNMITGTFFPYFKEINIPEGNY-LESSRFFVDKSRAKDILGNEYPISSMLFLSMINY 130 Query: 134 QND--IQTLVTVTTVGVEKMMIRAGLDVSRFGPHLKIGIERAVALRIELNAKTQIAL 188 D + T+ + + ++ R+G + L ER + + ++ + Q AL Sbjct: 131 SKDKGYDGIYTIVSHPMLTILKRSGWGIRVVEQGLSEKEERVYLVFLPVDDENQEAL 187
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 9e-09 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 36/159 (22%) Query: 56 VEQQVSGIGTVTSLHNV-VIRTQIDGQLTRLLVSEGQMVEAGELLATIDD-------RAV 107 VE + G +T I+ + + ++V EG+ V G++L + Sbjct: 80 VEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 108 VAALEQAQASRASNQAQLKS--------------------AEQDLQRYRSLYAER----- 142 ++L QA+ + Q +S +E+++ R SL E+ Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Query: 143 ---AVSRQLLDQQQATVDQLRATLKANDATINAERVRLS 178 LD+++A + A + + E+ RL Sbjct: 200 NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Score = 40.2 bits (94), Expect = 1e-05 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 16/207 (7%) Query: 110 ALEQAQASRASNQAQLKSAEQDLQRYRSLYAERAVSRQLLDQ--QQATVDQLR-ATLKAN 166 A+ + + +L+ + L++ S QL+ Q + +D+LR T Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 167 DAT--INAERVRLSYTRITSPVSGKVGIRNV-DVGNLVRVGDSLGLFSVTQIAPISVVFS 223 T + R + I +PVS KV V G +V ++L + V + + V Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTAL 371 Query: 224 LQQEQLSQLQALLGGEAAVRAY-SRDGGSALGEGRLLTIDNQIDSSTGTI-RVRASFD-- 279 +Q + + + V A+ G +G+ + + +D D G + V S + Sbjct: 372 VQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEEN 431 Query: 280 -----NRQARLWPGQFVAVSLHTGVRR 301 N+ L G V + TG+R Sbjct: 432 CLSTGNKNIPLSSGMAVTAEIKTGMRS 458
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 762 bits (1969), Expect = 0.0 Identities = 290/1040 (27%), Positives = 490/1040 (47%), Gaps = 36/1040 (3%) Query: 7 ISGWCVRHPIATALLTLASLLLGLLAFLRLGVAPLPEADFPTIQINALLPGGSPETMASS 66 ++ + +R PI +L + ++ G LA L+L VA P P + ++A PG +T+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 67 VATPLEVQFSAIPGITEMTSSSA-LGTTTLTLQFSLDKSIDVAAQEVQAAINAAAGRLPV 125 V +E + I + M+S+S G+ T+TL F D+A +VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 126 DMPNLPTWRKVNPADSPIMILRVNSE--MMPLIELSDYAETILARQLSQVNGVGQIFVVG 183 ++ + S +M+ S+ ++SDY + + LS++NGVG + + G Sbjct: 121 EVQQ-QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 184 QQRPAIRIQAQPEKLAAYQLTLADLRQSLQSASVNLAKGALYGEGRVS------TLAAND 237 Q A+RI + L Y+LT D+ L+ + +A G L G + ++ A Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 238 QLFNASDYDDLVV-AYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGAN 296 + N ++ + + G+ V LKDVAR+ E+ V A NG P L I GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 297 IVDTADAIQAALPRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLF 356 +DTA AI+A L L+ P ++V D T ++ S+HEV TL I LV LVM LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 LRQLSATLIVATVLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIHR 416 L+ + ATLI + V L +FA + G+++N LT+ +++A+G +VDDAIVVVEN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 HL-EAGASKVEAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAI 475 + E EA K ++I ++ I+ L A FIP+ F GG G ++R+F++++ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 476 LISVLASLTLAPMLASRFM-PALRHADAPRKGFAEW-------LTGGYERGLRWALGHQR 527 +SVL +L L P L + + P + GF W Y + LG Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 528 LMLVGFAFTVLVAVAGYVGIPKGFFPLQDTAFVFGTSQAAEDISYDDMVAKHRQLAEIIA 587 L+ +A V V ++ +P F P +D Q + + Q+ + Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 588 SDPA--VQSYNHAVGVTGGSQSLANGRFWIVLKDRGERDV---SVGEFIDRLRPQLAKVP 642 + V+S G + Q+ G ++ LK ER+ S I R + +L K+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 643 GIMLYLRAAQDINLSSGPSRTQYQYAL---RSSDSTQLALWAQRLTERLKQVPG-LMDVS 698 + I + T + + L L +L Q P L+ V Sbjct: 659 DGFVIPFNMPAI--VELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 699 NDLQVGASVTALDIDRVAAARFGLSAEDVSQTLYDAFGQRQVGEYQTEVNQYKVVLELDA 758 + + L++D+ A G+S D++QT+ A G V ++ K+ ++ DA Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 759 RQRGRAESLDWFYLRSPLSGEMVPLSAIAKVAAPRSGPLQINHNGMFPAVNLSFNLAAGV 818 + R E +D Y+RS +GEMVP SA G ++ P++ + A G Sbjct: 777 KFRMLPEDVDKLYVRSA-NGEMVPFSAFTTSH-WVYGSPRLERYNGLPSMEIQGEAAPGT 834 Query: 819 SLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQAFQSSLASQPLLILAALIAVYIILGVLYE 878 S G+A+ ++ + +P+ I + G + + S P L+ + + V++ L LYE Sbjct: 835 SSGDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 879 SFVHPLTILSTLPSAGIGAVFLLWAWGQDFSIMALIGIVLLIGIVKKNGILMVDFAIVAQ 938 S+ P++++ +P +G + + Q + ++G++ IG+ KN IL+V+FA Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLM 952 Query: 939 REQGMSAEQAIYQACLTRFRPIMMTTLAALLGAIPLMIGFGTGSELRQPLGIAVVGGLLV 998 ++G +A A R RPI+MT+LA +LG +PL I G GS + +GI V+GG++ Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 999 SQVLTLFSTPVVYLALERLF 1018 + +L +F PV ++ + R F Sbjct: 1013 ATLLAIFFVPVFFVVIRRCF 1032
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 1e-21 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 2/129 (1%) Query: 2 RVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGYG 61 +L+ +D+A LN+ LS G+ V + N G+ D++V DV++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRALRERR-QTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARL-QALTRRGG 119 +L +++ R PV++++A+ ++ +GA DYL KPF EL+ + +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 NHESHSQMR 128 Sbjct: 125 RPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.035 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 5/93 (5%) Query: 316 EETSLAGEIATTVDFLEVI----FDEAGVGIEVRGEAR-ALVERALFQRAVTNLLYNAAQ 370 + SLA E+ +L++ D ++ V L Q V N + + Sbjct: 214 RQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA 273 Query: 371 HTAAGGTLRVGVERRGDEVRVAVSNPGVPIADE 403 GG + + + V + V N G Sbjct: 274 QLPQGGKILLKGTKDNGTVTLEVENTGSLALKN 306
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 52.1 bits (124), Expect = 2e-09 Identities = 73/300 (24%), Positives = 114/300 (38%), Gaps = 14/300 (4%) Query: 128 DENTQATLLPPAVPTASSAPASLTEASSDPTLVKLNGVPAVNMALEQGAQDAAQTAKGGP 187 DE + +T L A A +A A + V A AL T K Sbjct: 90 DEQSTSTPLTTAQTMALAAVADKNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTD 149 Query: 188 AKSADPRQANLGDALAGLTSDSLTKAVDGKALEAQLQQTAEPAVASAASESLLESKAEPR 247 A S LTS+ LT A A Q P VA A S++ + S P Sbjct: 150 APST-VLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLT-PLVAEAQSKAEVISTPSPV 207 Query: 248 GEPFAAKLNGLTQAMAQQALTNRPVNGTVPGQPVAMQQNGWSEAVVDRVMWMSSQNLKSA 307 AA +T Q T P + + W +++ + + Q +SA Sbjct: 208 T---AAASPLITPHQTQPLPT-----VAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSA 259 Query: 308 EIQLDPAELGRLDVRIHMTADQTQVTFASPNAGVRDALESQMHRLRDMFSQQGMNQLDVN 367 E++L P +LG + + + + +Q Q+ SP+ VR ALE+ + LR ++ G+ N Sbjct: 260 ELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSN 319 Query: 368 VSDQSLARGWQGQQQGEGGSARGRGLAGEASGDEETLAGVSEIRSRPGASAARGLVDYYA 427 +S +S + G Q + S R A D++TL ++ G VD +A Sbjct: 320 ISGESFS-GQQQAASQQQQSQRTANHEPLAGEDDDTLPVPVSLQ---GRVTGNSGVDIFA 375
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 336 bits (864), Expect = e-116 Identities = 98/345 (28%), Positives = 183/345 (53%), Gaps = 2/345 (0%) Query: 9 DKTEEPTEKRRREAREKGQLPRSRELNTLAILMAGAGGLLIYGADLAGALLRLMRSNFEL 68 +KTE+PT K+ R+AR+KGQ+ +S+E+ + A+++A + L+ +LM E Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ 63 Query: 69 SRETAMNTESMLQLLGASAYLAAQGLWPILLMLLVAAIVGPIALGGWLFSMDALQPKFSR 128 S ++++ ++ +P+L + + AI + G+L S +A++P + Sbjct: 64 SYLPF--SQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 129 LNPLSGLKRMFSAKSLLELSKALIKFLVVLAVALLVLSADRDALLALAHQPLEQAILHSV 188 +NP+ G KR+FS KSL+E K+++K +++ + +++ + LL L +E Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 189 RVVGWSAFWMACSLLLIAAVDVPYQIWDNRQKLLMTKQEVRDEYKDSEGKPEVKSKIRQM 248 +++ ++I+ D ++ + ++L M+K E++ EYK+ EG PE+KSK RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 249 QREMAQRRMMAAVPEADVVITNPTHFAVALKYDPAGGGAPLLLAKGNDFLALKIREVAQE 308 +E+ R M V + VV+ NPTH A+ + Y PL+ K D +R++A+E Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEE 301 Query: 309 HKVMVMESPALARAVYYSTELDQEIPAGLYLAVAQVLAYVYQLKQ 353 V +++ LARA+Y+ +D IPA A A+VL ++ + Sbjct: 302 EGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 2e-04 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 373 GQVRLSGGGGGSSGSS--------GGGSSSSSSSSSGGFSGGGGSSG-GGGASGS 418 G L GGG S GS GGGS S G G GG +G GG SG+ Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77 Score = 35.8 bits (82), Expect = 3e-04 Identities = 15/37 (40%), Positives = 19/37 (51%) Query: 380 GGGGSSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGAS 416 GGG SG GG S + G SGGG +GG ++ Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.001 Identities = 15/40 (37%), Positives = 19/40 (47%) Query: 379 GGGGGSSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGASGS 418 GGG GS GGGS + +G GG G+ G A + Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 32.4 bits (73), Expect = 0.004 Identities = 16/40 (40%), Positives = 16/40 (40%) Query: 380 GGGGSSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGASGSW 419 GG G GG S S SS GGG SG GS Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Score = 30.1 bits (67), Expect = 0.017 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 382 GGSSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGASG 417 GG G+ S+S + +GG +G G G SG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSG 38 Score = 30.1 bits (67), Expect = 0.021 Identities = 13/40 (32%), Positives = 18/40 (45%) Query: 378 SGGGGGSSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGASG 417 GG G S G SG G + S+ ++ F S+ G G Sbjct: 65 GGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Score = 29.3 bits (65), Expect = 0.029 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%) Query: 385 SGSSGGGSSSSSSSSSG---GFSGGGGSSGGGGASGSW 419 SG G G ++ + S+SG G G G GG W Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGW 39
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.022 Identities = 15/48 (31%), Positives = 20/48 (41%) Query: 398 SAGGSGGGRRRGGDYASSSGSSSSSSSSSSSDSFSGGGGSSGGGGASG 445 + G GGG G ++S + S S G G+ GG G SG Sbjct: 25 TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSG 72
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 2e-24 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 2 KILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTGI 61 IL+ DD + +R ++ L G+ + T + +G+ D +VTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DLLRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121 DLL ++ + LPVL+++A+ I+A++ G Y+ KPF L I + Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 41.8 bits (98), Expect = 7e-06 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 462 ETDLDKNLVEALADPLV--HLVRNAVDHGIESPEEREAAGKPRVGQVVLSAEQEGDHILL 519 E ++ +++ P++ LV N + HGI P+ G+++L ++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 520 MITDDGKGM 528 + + G Sbjct: 295 EVENTGSLA 303
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.5 bits (144), Expect = 8e-12 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 6/142 (4%) Query: 2 AVKVLVVDDSGFFRRRVSEILSADGQIQVVGTATNGREAIEQALALRPDVITMDYEMPLM 61 +LV DD R +++ LS G +N A D++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVRNIMQRCP-TPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNPDKVRQ 120 + + I + P PVL+ S+ + A + GA DYLPK F D++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPF-DLTELIGIIGR 117 Query: 121 LLCEKVLTIARSNRRSISLPPL 142 L E ++ S PL Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPL 139
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 69.2 bits (169), Expect = 1e-15 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 16/125 (12%) Query: 128 EITLNSSLLFPSGDALPNDAAFDIVEKVAKILAPYKNP---IHVEGFTDDVPIHSPRYPT 184 TL S +LF A ++++ L+ + V G+TD I S Y Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY-- 269 Query: 185 NWELSAARAASIVRLLGNDGVEPSRMAAVGYGEFQPVADNASAEGR---------AKNRR 235 N LS RA S+V L + G+ +++A G GE PV N + A +RR Sbjct: 270 NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRR 329 Query: 236 VVLVI 240 V + + Sbjct: 330 VEIEV 334
>PF05844#YopD protein Length = 295 Score = 385 bits (989), Expect = e-137 Identities = 291/295 (98%), Positives = 293/295 (99%) Query: 1 MIDTQYSLAATQAAIPSEPIAPGAAGRSVGTPQAAADLPQVPAARADRVELNAPRQVLDP 60 MIDTQYSLAATQAAIPSEPIAPGAAGRSVGTPQAAA+LPQVPAARADRVELNAPRQVLDP Sbjct: 1 MIDTQYSLAATQAAIPSEPIAPGAAGRSVGTPQAAAELPQVPAARADRVELNAPRQVLDP 60 Query: 61 VRMEAAGSELDSSVELLLILFRIAQKARELGVLQRDNENQSIIHAQKAQVDEMRSGATLM 120 VRMEAAGSELDSSVELLLILFRIAQKARELGVLQRDNENQ+IIHAQKAQVDEMRSGATLM Sbjct: 61 VRMEAAGSELDSSVELLLILFRIAQKARELGVLQRDNENQAIIHAQKAQVDEMRSGATLM 120 Query: 121 IAMAVIAGVGALASAVVGSLGALKNGKAISQEKTLQKNIDGRNELIDAKMQALGKTSDED 180 IAMAVIAGVGALASAVVGSLGALKNGKAISQEKTLQKNIDGRNELIDAKMQALGKTSDED Sbjct: 121 IAMAVIAGVGALASAVVGSLGALKNGKAISQEKTLQKNIDGRNELIDAKMQALGKTSDED 180 Query: 181 RKIVGKVWAADQVQDSVALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQA 240 RKIVGKVWAADQ QDSVALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQA Sbjct: 181 RKIVGKVWAADQAQDSVALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQA 240 Query: 241 SAREGEVNATIGQSQKQKVEDQMSFDAGFMKDVLQLIQQYTQSHNQAWRAAAGVV 295 SARE EVNATIGQSQKQKVEDQMSFDAGFMKDVLQLIQQYTQSHNQAWRAAAGVV Sbjct: 241 SAREEEVNATIGQSQKQKVEDQMSFDAGFMKDVLQLIQQYTQSHNQAWRAAAGVV 295
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 45.9 bits (109), Expect = 3e-09 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 4/118 (3%) Query: 10 LLAEFAGRIGLPSLSLDEEGMASLLFDEQVGVTLLLLAERERLLLEVDVAGIDVLGEGIF 69 LL +F+ + + L D+ G +++ D +TL RERLLL + + Sbjct: 9 LLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLSCDYARERLLLIGLLEP---HKDIPQ 65 Query: 70 RQLASFNRHWHCFDLH-FGFDELTGKVQLYAQILAAQLTLECFEATLANLLDHAEFWQ 126 + L + + G DE +G Y I +L++ + +A LL+ W+ Sbjct: 66 QCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWR 123
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 92.9 bits (231), Expect = 2e-27 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 5/120 (4%) Query: 2 DHLLSGLATRLGQGPFVADRTGSYHLRIDGQSVLLLRQGDDLLLESPLEHAPLDPQRDQQ 61 LL + L P V D G+ ++ ID L L D E L L+P + Sbjct: 7 KTLLDDFSRSLEMQPLVFDDHGTCNMIIDNTFALTLS--CDYARERLLLIGLLEP--HKD 62 Query: 62 GLLRALLSRVASWSRRYPQAIVLDADGRLLLQA-RLGLDGLDPERLERALAAQVGLLEAL 120 + LL+ + + LD L + + L L+R +A + + Sbjct: 63 IPQQCLLAGALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGW 122
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 817 bits (2113), Expect = 0.0 Identities = 376/600 (62%), Positives = 473/600 (78%), Gaps = 7/600 (1%) Query: 1 MRRLLIGGLLALLPGAVLRAQPLDWPSLPYDYVAQGESLRDVLANFGANYDASVIVSDKV 60 +R+L G LL L + AQ LDW +PY YVA+GESLRD+L +FGANYDA+V+VSDK+ Sbjct: 9 FKRVLTGTLLLLSSYSW--AQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKI 66 Query: 61 NDQVSGRFDLESPQAFLQLMASLYNLGWYYDGTVLYVFKTTEMQSRLVRLEQVGEAELKR 120 ND+VSG+F+ ++PQ FLQ +ASLYNL WYYDG VLY+FK +E+ SRL+RL++ AELK+ Sbjct: 67 NDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQ 126 Query: 121 ALTAAGIWEPRFGWRADPSGRLVHVSGPGRYLELVEQTAQVLEQQYTLRSEKTGDLSVEI 180 AL +GIWEPRFGWR D S RLV+VSGP RYLELVEQTA LEQQ +RSEKTG L++EI Sbjct: 127 ALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEI 186 Query: 181 FPLRYAVAEDRKIEYRDDEIEAPGIASILSRVLSDANVVAVGDEPGKLRPGP--QSSHAV 238 FPL+YA A DR I YRDDE+ APG+A+IL RVLSDA + V + ++ S+ A Sbjct: 187 FPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRASAQAR 246 Query: 239 VQAEPSLNAVVVRDHKDRLPMYRRLIEALDRPSARIEVGLSIIDINAENLAQLGVDWSAG 298 V+A+PSLNA++VRD +R+PMY+RLI ALD+PSARIEV LSI+DINA+ L +LGVDW G Sbjct: 247 VEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVG 306 Query: 299 IRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDSRGLDFLLAKVTLLQSQGQAQIGSRP 358 IR GNN + I+TTG S A NGA+GSLVD+RGLD+LLA+V LL+++G AQ+ SRP Sbjct: 307 IRTGNNHQVVIKTTGDQS---NIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRP 363 Query: 359 TLLTQENTQAVLDQSETYYVRVTGERVAELKAITYGTMLKMTPRVVTLGDTPEISLSLHI 418 TLLTQEN QAV+D SETYYV+VTG+ VAELK ITYGTML+MTPRV+T GD EISL+LHI Sbjct: 364 TLLTQENAQAVIDHSETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHI 423 Query: 419 EDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQSLLIGGIYRDELSQSQRKVPWLGDIPY 478 EDG+QKPNS+G++ IPTI+RTV+DT+ARVGHGQSL+IGGIYRDELS + KVP LGDIPY Sbjct: 424 EDGNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPY 483 Query: 479 LGALFRTTADTVRRSVRLFLIEPRLIDDGVGHYLALNNRRDLRGGLLEIDELSNQSLSLR 538 +GALFR ++ RR+VRLF+IEPR+ID+G+ H+LAL N +DLR G+L +DE+SNQS +L Sbjct: 484 IGALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGQDLRTGILTVDEISNQSTTLN 543 Query: 539 KLLGSARCQALAPARAEQEHLRQAGQGSFLTPCRMGAQEGWRVTDGACPKDGAWCVGAER 598 KLLG ++CQ L A+ Q+ L Q + S+LT C+M GWRV +GAC +WCV A + Sbjct: 544 KLLGGSQCQPLNKAQEVQKWLSQNNKSSYLTQCKMDKSLGWRVVEGACTPAQSWCVSAPK 603
>PF09025#YopR Core Length = 143 Score = 205 bits (522), Expect = 2e-71 Identities = 143/143 (100%), Positives = 143/143 (100%) Query: 1 MSRIDTPPGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLL 60 MSRIDTPPGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLL Sbjct: 1 MSRIDTPPGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLL 60 Query: 61 QRFAQPLQGLEADRLELKAMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRELQ 120 QRFAQPLQGLEADRLELKAMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRELQ Sbjct: 61 QRFAQPLQGLEADRLELKAMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRELQ 120 Query: 121 VLIPLNGMLDNLVRNSHKLDLES 143 VLIPLNGMLDNLVRNSHKLDLES Sbjct: 121 VLIPLNGMLDNLVRNSHKLDLES 143
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 75.0 bits (184), Expect = 1e-17 Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 6/165 (3%) Query: 27 LYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRENF 86 L++ +S ++G ++A L + + V + E L ++G P+ Sbjct: 53 LFSNLSDQDGGAIVAQLTQMNIPYR--FANGSGA-IEVPADKVHELRLRLAQQGLPKGG- 108 Query: 87 STLKDVFPKDGLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGLGRK 146 + ++ ++ S E+ A E++ T+ + V ARVH+ +P + R+ Sbjct: 109 AVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMP-KPSLFVRE 167 Query: 147 SSPASASVFIKHAADVQLD-AYVPQIKQLVNNGIEGLSYDRISVV 190 SASV + LD + + LV++ + GL +++V Sbjct: 168 QKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLV 212
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.8 bits (66), Expect = 0.008 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Query: 21 LRARDYQDYLSANRLVEAA--------RERAAEIEREAHEVYQEQKRLGWEAGLEEARLR 72 L RDYQ++L +L+ A +++A E E+EA E Q+ ++ E EE Sbjct: 117 LMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKN 176 Query: 73 QAGLIQETLLRCNRYYRQVDRQLGEVVLQAVRKVLRHYDAVE 114 +A L T N ++ L E++ Q L + +E Sbjct: 177 RANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLE 218
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 26.4 bits (58), Expect = 0.025 Identities = 8/30 (26%), Positives = 15/30 (50%) Query: 19 EGGFDFARIHPIDFFAIFPSEREARQAAGQ 48 G F + P++F A+F + ++ A Q Sbjct: 131 RGTFPALNLSPVNFDALFMDYLQRQEQAEQ 160
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 26.4 bits (58), Expect = 0.009 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 5 KLSLPTLALCVGLLGACS--PTPRQPRAAPIVPAN 37 KL L LAL LL C+ T +Q R+ P+ N Sbjct: 2 KLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFN 36
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1092 bits (2826), Expect = 0.0 Identities = 508/1033 (49%), Positives = 710/1033 (68%), Gaps = 6/1033 (0%) Query: 1 MARFFIDRPVFAWVISLLIVLAGVLAIRFLPVAQYPDIAPPVVNVSASYPGASAKVVEEA 60 MA FFI RP+FAWV+++++++AG LAI LPVAQYP IAPP V+VSA+YPGA A+ V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTAIIEREMNGAPGLLYTKATS-STGQASLTLTFRQGVNADLAAVEVQNRLKIVESRLPE 119 VT +IE+ MNG L+Y +TS S G ++TLTF+ G + D+A V+VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 SVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGKVETWGA 179 V++ GI VEK++ S ++ S + ++ + +SNV L R+ GVG V+ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISATVKVDDTL 239 +YAMRIW D L L+ D++N ++ N ++ G +G ++A++ Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAV 299 PE+FG++ LR+ +DG +RL+DVARVE G Y ++R+N A GL +K+A G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQ 359 TAK I+A L EL +FP+G+ PYDT+ FV++SI +VV TL EA++LVF VMYLF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVLAIGILVDDAIIVVENVERLM 419 N RATLIPT+ VPV LLGTF ++ G+SIN LTMFGMVLAIG+LVDDAI+VVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 AEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGF 479 E+ L P +AT K+M QI GA+VGI +VL +VF+PMAFF G+ G IYRQF++T+ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLRPIDADHHE-KRGFFGWFNRAFLRLTGRYRNAVAGILARPIRW 538 S +AL LTPALCATLL+P+ A+HHE K GFFGWFN F Y N+V IL R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 MLVYALVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGTPMAETMANVGDVERYLAEH 598 +L+YAL++ + +LF+RLP +FLPEEDQG F+ M+ P G T + V Y ++ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 EP--VAYAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQHVGAIVERINQRFAGLPNR 656 E V + V GFS G ++ M F +LK W ER A++ R + + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 TVYAMNSPPLPDLGSTSGFDFRLQDRGGVGYEALVKARDQLLARAAEDP-RLANVMFAGQ 715 V N P + +LG+ +GFDF L D+ G+G++AL +AR+QLL AA+ P L +V G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 GEAPQIRLDIDRRKAETLGVSMDEINTTLAVMFGSDYIGDFMHGSQVRKVVVQADGAKRL 775 + Q +L++D+ KA+ LGVS+ +IN T++ G Y+ DF+ +V+K+ VQAD R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835 +D+ +L+VR+ GEMVP + F + W G P+L RYNG PS ++G+AAPG SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 QAMEQLMQGLPEGIAHEWSGQSFEERLSGAQAPALFALSVLIVFLALAALYESWSIPLAV 895 ME L LP GI ++W+G S++ERLSG QAPAL A+S ++VFL LAALYESWSIP++V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 ILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD-HYQEGMSLL 954 +LVVPLG++G LL +L ND+YF VGL+T IGLSAKNAILI+E AKD +EG ++ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 QATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTATVLAVFL 1014 +ATL A R+RLRPI+MTSLAF GV+PLA+S+GAGSGAQ A+G GV+GG+V+AT+LA+F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFLVVGRLFR 1027 VP+FF+V+ R F+ Sbjct: 1021 VPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 3e-06 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 3/83 (3%) Query: 117 ASHAAAADKLKRYADLIKDRAISERE--YTEAQTDARQALAQIASAKAELEQARLRLGYA 174 + + ++++ K+ + E RQ I EL + R + Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQAS 328 Query: 175 TVTAPIDGR-ARRALVTEGALVG 196 + AP+ + + + TEG +V Sbjct: 329 VIRAPVSVKVQQLKVHTEGGVVT 351 Score = 41.4 bits (97), Expect = 4e-06 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 7/137 (5%) Query: 67 EVRARVAGIVTRRLYEEGQDVRAGTVLFQIDPAPLKAALDISRGALARAEASHAAAADKL 126 E++ IV + +EG+ VR G VL ++ +A ++ +L +A L Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE-QTRYQIL 156 Query: 127 KRYADLIKDRAISEREYT------EAQTDARQALAQIASAKAELEQARLRLGYATVTAPI 180 R +L K + + E + +L + + + ++ + L A Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216 Query: 181 DGRARRALVTEGALVGE 197 R E E Sbjct: 217 LTVLARINRYENLSRVE 233
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 97.0 bits (241), Expect = 3e-27 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 5/209 (2%) Query: 1 MARKTKEESQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCL 60 MARKTK+E+Q+TR ILD A R+F ++GV +T++ ++A AAGV+RGA+Y H+K+K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMCDRAFGQI-EVPDENA--RVPALDILLRAGM-GFLRQCCEPGSVQRVLEILYLKCERS 116 + + + I E+ E +LR + L + ++EI++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 117 DENEPLLRRRELLEKQGQRFGLRQIRRAVERGELPARLDVELASIYLQSLWDGICGTLAW 176 E + + + L + + ++ +E LPA L A+I ++ G+ + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 177 TERLRDDPWNRAERMFRAGLDSLRSSPYL 205 + D A L+ P L Sbjct: 181 APQSFDLK-KEARDYVAILLEMYLLCPTL 208
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.002 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 11/68 (16%) Query: 14 VEIEGSRHRAPVDSLRIGTDAEARLSVLYIDGKRLHISEED---------AQRLVVAGAE 64 V + G + + R AEA LY+ G+R S ED RLV G + Sbjct: 711 VLVPGRANLVWLQKFRGQLFAEAL--HLYLAGERYFPSPEDEEIYFRPEQELRLVETGVQ 768 Query: 65 DQRRHLMA 72 + L+ Sbjct: 769 GRLWALLT 776
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 811 bits (2096), Expect = 0.0 Identities = 237/1055 (22%), Positives = 435/1055 (41%), Gaps = 56/1055 (5%) Query: 5 IIQFAIEQRWLVLLAVLGMAGVGIGSYQKLSIDAVPDITNVQVQINTAAPGYSPLEVEQR 64 + F I + + + + G + +L + P I V ++ PG V+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITYPVETVMAGLPGLQETRSLS-RPGISQVTVIFEEGTDIYFARQQVNERLSTAREQLPE 123 +T +E M G+ L S S G +T+ F+ GTD A+ QV +L A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 DISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKGVAE 183 ++ + YL D T D+ ++ L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 INTIGGYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYI------ERRGEQLL 237 + G I D L YKLT D+ N + N+ + AG + + Sbjct: 175 VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVKDMDDIRGIIV-SNVDGVPIRIRDVAEVGLGKELRTGAATENGREVVLGTVFM 296 I A + K+ ++ + + N DG +R++DVA V LG E A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAVATVKKNLVEGAALVIA 356 G N+ + A+A+ +L E+ P+G+K + YD T V ++ V K L E LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 VLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLG--ALDFGIIVDGAVVIV 414 V++LFL N+RA LI +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQAHHGRQLTRAERFHEVFAASREARRALVFGQIIIMVVYLPIFALTGVEG 474 EN + + + + ALV +++ V++P+ G G Sbjct: 414 EN---------VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEE----------NFVMRRARL 524 ++ + T+V+A+ ++++++ PA A + E N + Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 AYEPALRWVLGHRALVVGGALGAILLTGLVASRMGSEFIPSLSEGDFAMQGLRVPGTSL- 583 Y ++ +LG + + ++ R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 584 -TQSVEMQQTLEKKLMGKFPEIERVFARTGTAEIASDLMPPNASDSYVMLKPQSQWPDPK 642 TQ V + Q + L + +E VF G + NA ++V LKP + + Sbjct: 585 RTQKV-LDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 643 KSREALLEELQAAALEVP-GSVYEFSQPIQLRFNELISGVRSDVA-VKVFGDDMQVLNDT 700 S EA++ + ++ G V F+ P EL + D + G L Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNMP---AIVELGTATGFDFELIDQAGLGHDALTQA 697 Query: 701 AEKI-SKVLQSIDGASEVKVEQTTGLPVLTVDIDRDKAARFGLNVGDIQDTVATALGGRN 759 ++ Q V+ +++D++KA G+++ DI T++TALGG Sbjct: 698 RNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTY 757 Query: 760 AGTLFEGDRRFDIVIRLPETLRADLPALSNLLIPLPPNNLARIDFIPLSDVARLDLSPGP 819 + R + ++ R + L + + +P S G Sbjct: 758 VNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANG-----EMVPFSAFTTSHWVYGS 812 Query: 820 NQISRENGKRRIVVSANVRGRDIGSFVLEAQQKLQDGVKIPAGYWTTWGGQFEQLQSAAK 879 ++ R NG + + + + L K+PAG W G Q + + Sbjct: 813 PRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGN 870 Query: 880 RLQVVVPVALLLVFTLLFAMFNNVKDGLLVFTGIPFALTGGVLALWLRGIPLSISAAVGF 939 + +V ++ ++VF L A++ + + V +P + G +LA L + VG Sbjct: 871 QAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGL 930 Query: 940 IALSGVAVLNGLVMISFIRNLL-QEGRSLDQAVWEGAITRLRPVLMTALVASLGFVPMAL 998 + G++ N ++++ F ++L+ +EG+ + +A RLRP+LMT+L LG +P+A+ Sbjct: 931 LTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAI 990 Query: 999 ATGTGAEVQRPLATVVIGGILSSTMLTLLVLPVLY 1033 + G G+ Q + V+GG++S+T+L + +PV + Sbjct: 991 SNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFF 1025 Score = 70.6 bits (173), Expect = 2e-14 Identities = 70/527 (13%), Positives = 160/527 (30%), Gaps = 46/527 (8%) Query: 2 FERIIQFAIEQRWLVLLAVLGMAGVGIGSYQKLSIDAVPDITNVQVQINTAAPGYSPLEV 61 + + + LL + + + +L +P+ P + E Sbjct: 526 YTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQER 585 Query: 62 EQRI---------TYPVETVMA--GLPGLQETRSLSRPGISQVTV-IFEEGTDIYFARQQ 109 Q++ V + + G + G++ V++ +EE + + Sbjct: 586 TQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 110 VNERLSTAREQLPED-ISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQD 168 V R ++ + + P P LG D + L ++ Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELG------TATGFDFELIDQAGLGHDALTQARN 699 Query: 169 WIIRPQLRNVKGVAEINTIGGY-AKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAG 227 ++ ++ + + G QF + D +K A ++L D+ + Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 228 YIERRGEQ--LLIRAPGQ-VKDMDDIRGIIVSNVDGVPIRIRDVAEVGLGKELRTGAAT- 283 RG L ++A + +D+ + V + +G + G+ Sbjct: 760 DFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTS----HWVYGSPRL 815 Query: 284 --ENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAVA 341 NG + G +S + + E + LP G+ + + Sbjct: 816 ERYNGLPSMEIQGEAAPGTSSGDAMALM----ENLASKLPAGI-GYDWTGMSYQERLSGN 870 Query: 342 TVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGAL 401 + +V L + + ++PL ++ ++ + L Sbjct: 871 QAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGL 930 Query: 402 --DFGIIVDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVFAASREARRALVFGQIII 459 G+ A++IVE A G+ + A A R R ++ + Sbjct: 931 LTTIGLSAKNAILIVEFAK----DLMEKEGKGVVEA-----TLMAVRMRLRPILMTSLAF 981 Query: 460 MVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALF 506 ++ LP+ G + + V+ ++ A +L++ FVP + Sbjct: 982 ILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.8 bits (106), Expect = 3e-07 Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 22/212 (10%) Query: 88 ISSPQLSDQRSEFAAAQRRLSLAQSTYKREQQLWKEGISAEQEFLLARQGLQ-EAEIALN 146 I+ + +Q +++ A L + +S + +Q+ E +SA++E+ L Q + E L Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKS---QLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 147 NARAKIAALGG--NPSLQGGNRYELRAPFAGVLVE-KHLTQGEPVDGTANVFTLS-DLSS 202 I L + + +RAP + + + K T+G V + + + + Sbjct: 306 QTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365 Query: 203 VWATFNVPAQLLGQVRVGSKVKVLAQALDS----EVEGTVSYIG-DLLGEQTRAATARVT 257 + T V + +G + VG + +A + G V I D + +Q V Sbjct: 366 LEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425 Query: 258 LSNPEST---------WRPGLFVSVQVAEATR 280 +S E+ G+ V+ ++ R Sbjct: 426 ISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457 Score = 30.6 bits (69), Expect = 0.010 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 13/119 (10%) Query: 40 LAQVVSLPGEIRFNEDRTAHIVPRLPGIVDSVPANLGQAVKQGELLAVISSPQLSDQRSE 99 + V + G++ + I P IV + G++V++G++L +++ ++ Sbjct: 80 VEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGA---EAD 135 Query: 100 FAAAQRRLSLAQSTYKREQQLWKE---------GISAEQEFLLARQGLQEAEIALNNAR 149 Q L A+ R Q L + + E F + +L + Sbjct: 136 TLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 7e-20 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 8/145 (5%) Query: 2 RILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGWD 61 IL+ +D+ L+Q L+ +GY V ++ +LV+ DV +P + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLRRLRER-SSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHDQ 120 LL R+++ V++++ ++ + GA D++ KPF EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE--- 121 Query: 121 APMQDVLRVADLELDASRHRAFRGR 145 R + LE D+ GR Sbjct: 122 ----PKRRPSKLEDDSQDGMPLVGR 142
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 24/105 (22%) Query: 370 LVSNAVRH----TPQGGRIDVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFYRRAGRQ 425 LV N ++H PQGG+I ++ + G + V N G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 426 TGAQAGTGLGLAIV-QSIMAYHGGRAEAE-SVPQQKTHLRLLFPS 468 + TG GL V + + +G A+ + S Q K + +L P Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.3 bits (89), Expect = 6e-05 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 30/216 (13%) Query: 229 RADVAQARTQLKSTQAQAIDLKYQ--RAQLEHAIAVLVGLPPAQFNLPPVASVPKLPDLP 286 + A TQ+ + + + R Q+ L LP + P ++ Sbjct: 126 KLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL 185 Query: 287 AVVP----------SQLLERRPDIASAERKVISANAQIGVAKAAY------FPDLTLSAA 330 + +Q ++ ++ + ++ A+I + D + Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 331 GGYRSGSLSNWISTPNRFWSIGPQFAMTLFDGGLIGSQVDQAEATYDQTVATYRQTVLDG 390 + + N++ + + I S++ A+ Y ++ +LD Sbjct: 246 KQA--IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Query: 391 FREVEDYLVQLSVLDEESGVQREALESAREALRLAE 426 R+ D + L L E + + Sbjct: 304 LRQTTDNIGLL----------TLELAKNEERQQASV 329 Score = 31.3 bits (71), Expect = 0.009 Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 18/150 (12%) Query: 171 ASAADLAAVRLSQQSQLAQNYLQLRVMDEQIRLLNDTVTAYERSLKVAENK-------YR 223 + + + Q+Q Q L L + + + YE +V +++ Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 224 AGIVTRADVAQARTQLKSTQAQAIDLKYQRAQLEHAIAVLVGLPPAQFNLPPVASVPKLP 283 + + V + + + K Q Q+E I A+ V Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS------AKEEYQLVTQ----- 294 Query: 284 DLPAVVPSQLLERRPDIASAERKVISANAQ 313 + +L + +I ++ + Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEER 324
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 816 bits (2110), Expect = 0.0 Identities = 290/1034 (28%), Positives = 512/1034 (49%), Gaps = 31/1034 (2%) Query: 7 FIRRPVATTLLTLALLLAGTLSFGLLPVAPLPNVDFPAIVVSASLPGASPETMASSVATP 66 FIRRP+ +L + L++AG L+ LPVA P + PA+ VSA+ PGA +T+ +V Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 67 LERSLGRIAGISEMTSSS-SLGSTTVVLVFDLEKDIDGAAREVQAAINGAMSLLPSGMPN 125 +E+++ I + M+S+S S GS T+ L F D D A +VQ + A LLP + Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 126 NPSYRKANPSDMPIMVLTLTSET--QSRGEMYDLASTVLAPKLSQVQGVGQVSIGGSSLP 183 S +MV S+ ++ ++ D ++ + LS++ GVG V + G+ Sbjct: 125 -QGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 184 AVRVDLNPDAMSQYGLSLDSVRTAIAAANSNGPKG------AVEKDDKHWQVDANDQLRK 237 A+R+ L+ D +++Y L+ V + N G A+ + + A + + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 238 AREYEPLVIHYNADNGAAVRLGDVAKVSDSVEDVRNAGFSDDLPAVLLIVTRQPGANIIE 297 E+ + + N+D G+ VRL DVA+V E+ + PA L + GAN ++ Sbjct: 243 PEEFGKVTLRVNSD-GSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 298 ATDAIHAQLPVLQELLGPQVKLNVMDDRSPSIRASLEEAELTLLISVALVILVVFLFLRN 357 AI A+L LQ +K+ D +P ++ S+ E TL ++ LV LV++LFL+N Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 358 GRATLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDAIVVVENIARRI- 416 RATLIP++AVPV L+GTFA++ +S+N L++ +++A G +VDDAIVVVEN+ R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 417 EEGDPPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLFREFAVTLSAAILVS 476 E+ PP +A Q+ ++ + + L AVFIP+ GG TG ++R+F++T+ +A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 477 LVVSLTLTPMLCARLLRPLKRPEG---ASLARRSDRFFAAFMLRYRASLGWALEHSRLMV 533 ++V+L LTP LCA LL+P+ + F + Y S+G L + + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 534 VIMLACIAMNLWLFVVVPKGFLPQQDSGRLRGYAVADQSISFQSLSAKMGEYRKILSSDP 593 +I +A + LF+ +P FLP++D G + + + + + Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 594 AVE-----NVVGFIGGGRWQSSNTGSFFVTLKPIGERDP----VEKVLTRLRERIAKVPG 644 V GF G Q+ N G FV+LKP ER+ E V+ R + + K+ Sbjct: 602 KANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 645 AALYLNAGQDVRLGGRDSNAQYEFTLRS-DDLTLLREWAPKVEAAMRKLP-QLVDVNSDS 702 + + G + +E ++ L + ++ + P LV V + Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 703 QDKGVQTRLVIDRDRAATLGINVEMVDAVLNDSFGQRQVSTIFNPLNQYRVVMEVDQQYQ 762 + Q +L +D+++A LG+++ ++ ++ + G V+ + ++ ++ D +++ Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 763 QSPEILRQVQVIGNDGQRVPLSAFSRYEPSRAPLEVNHQGQFAATTLSFNLAPGAQIGPT 822 PE + ++ V +G+ VP SAF+ + + + APG G Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 823 REAIMQALEPLHIPVDVQTSFEGNAGAVQDTQNQMPWLILLALLAVYIVLGILYESYVHP 882 + L P + + G + + + NQ P L+ ++ + V++ L LYES+ P Sbjct: 840 MALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIP 897 Query: 883 LTILSTLPSAGVGALLALILCRSELSLIALIGIILLIGIVKKNAIMMIDFALEAERNHGL 942 ++++ +P VG LLA L + + ++G++ IG+ KNAI++++FA + G Sbjct: 898 VSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957 Query: 943 SPREAILEACMMRFRPIMMTTLAALLGALPLIFGIGGDAALRRPLGITIVGGLIGSQLLT 1002 EA L A MR RPI+MT+LA +LG LPL G + + +GI ++GG++ + LL Sbjct: 958 GVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA 1017 Query: 1003 LYTTPVVYLYLDRL 1016 ++ PV ++ + R Sbjct: 1018 IFFVPVFFVVIRRC 1031 Score = 83.0 bits (205), Expect = 4e-18 Identities = 73/366 (19%), Positives = 136/366 (37%), Gaps = 15/366 (4%) Query: 665 QYEFTLRSDDLTL--LREWAPK-VEAAMRKLPQLVDVNSDSQDKGVQTRLVIDRDRAATL 721 F + T + ++ V+ + +L + DV R+ +D D Sbjct: 139 VAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY--AMRIWLDADLLNKY 196 Query: 722 GINVEMVDAVL---NDSFGQRQVSTIFNPLNQYRVVMEVDQQYQQSPEILRQVQVIGN-D 777 + V L ND Q+ Q + Q ++PE +V + N D Sbjct: 197 KLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSD 256 Query: 778 GQRVPLSAFSRYEPSRAPLE--VNHQGQFAATTLSFNLAPGAQIGPTREAIMQALEPLH- 834 G V L +R E G+ A L LA GA T +AI L L Sbjct: 257 GSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANALDTAKAIKAKLAELQP 315 Query: 835 -IPVDVQ-TSFEGNAGAVQDTQNQMPWLILLALLAVYIVLGILYESYVHPLTILSTLPSA 892 P ++ VQ + +++ + A++ V++V+ + ++ L +P Sbjct: 316 FFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVV 375 Query: 893 GVGALLALILCRSELSLIALIGIILLIGIVKKNAIMMIDFALEAERNHGLSPREAILEAC 952 +G L ++ + + G++L IG++ +AI++++ L P+EA ++ Sbjct: 376 LLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSM 435 Query: 953 MMRFRPIMMTTLAALLGALPLIFGIGGDAALRRPLGITIVGGLIGSQLLTLYTTPVVYLY 1012 ++ + +P+ F G A+ R ITIV + S L+ L TP + Sbjct: 436 SQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495 Query: 1013 LDRLRH 1018 L + Sbjct: 496 LLKPVS 501
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 840 bits (2171), Expect = 0.0 Identities = 301/1036 (29%), Positives = 514/1036 (49%), Gaps = 29/1036 (2%) Query: 4 SRPFILRPVATTLLMVAILLSGLIAYRFLPISALPEVDYPTIQVVTLYPGASPEIMTSSI 63 + FI RP+ +L + ++++G +A LP++ P + P + V YPGA + + ++ Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLENQLGQIPGLNEMSSSS-SGGASVITLQFSLQSNLDVAEQEVQAAINAAQSLLPND 122 T +E + I L MSS+S S G+ ITL F ++ D+A+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPNQPVFSKVNPADAPILTLAVMSDG--MPLPQIQDLVDTRLAQKISQISGVGLVSISGG 180 + Q + S + + ++ +SD I D V + + +S+++GVG V + G Sbjct: 122 VQQQGI-SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QRPAVRVRANPTALAAAGLSLEDLRSTVTSNNLNGPKGSFDGPTRAS------TLDANDQ 234 Q A+R+ + L L+ D+ + + N G G ++ A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LRSADAYRDLII-AYKNGSPLRIRDVASVEDDAENVRLAAWANNLPAVVLNIQRQPGANV 293 ++ + + + + +GS +R++DVA VE EN + A N PA L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IEVVDRIKALLPQLQSTLPGNLDVQVLTDRTTTIRASVKDVQFELALAVALVVMVTFLFL 353 ++ IKA L +LQ P + V D T ++ S+ +V L A+ LV +V +LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 RNVYATLIPSFAVPLSLIGTFGVMYLSGFSINNLTLMALTIATGFVVDDAIVMVENIARY 413 +N+ ATLIP+ AVP+ L+GTF ++ G+SIN LT+ + +A G +VDDAIV+VEN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 L-EQGDSPLEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGDVAGRLFREFAITLAVAIL 472 + E P EA K QI ++ + L AV IP+ F G G ++R+F+IT+ A+ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISGFVSLTLTPMLSAKLLRHIDEDQQ---GRFARAAGRVIDGLIAQYAKALRVVLRHQPL 529 +S V+L LTP L A LL+ + + G F D + Y ++ +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 530 TLLVAIATLALTALLYLAMPKGFFPVQDTGVIQGVAEAPQSISFQAMSERQRALAEVVLK 589 LL+ +A +L+L +P F P +D GV + + P + + + + + LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 590 DPA--VASLSSYIGVDGSNPTLNTGRLLINLKPHSERDV---TASEVIQRLQPELDHLPG 644 + V S+ + G S N G ++LKP ER+ +A VI R + EL + Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 645 IKLYMQPVQDLTIEDRVARTQYQFTLQD---ADPDVLAEWVPKLVARLQELP-QLADVAS 700 + P I + T + F L D D L + +L+ + P L V Sbjct: 660 GFVI--PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 701 DWQDKGLQAYLNIDRDTASRLGVKLSDIDSVLYNAFGQRLISTIFTQATQYRVVLEVAPQ 760 + + Q L +D++ A LGV LSDI+ + A G ++ + ++ ++ + Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 761 FQLGPQALEQLYVPSSDGTQVRLSSLAKVEERHTLLAINHIAQFPSATLSFNLAKGYSLG 820 F++ P+ +++LYV S++G V S+ + + PS + A G S G Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSG 837 Query: 821 EAVEAIRGVEASLELPLSMQGSFRGAALAFEASLSNTLLLILASVVTMYIVLGILYESFI 880 +A+ + + + +LP + + G + S + L+ S V +++ L LYES+ Sbjct: 838 DAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 881 HPVTILSTLPSAGVGALLALMLAGQEIGIVAIIGIILLIGIVKKNAIMMIDFALDAERNE 940 PV+++ +P VG LLA L Q+ + ++G++ IG+ KNAI++++FA D E Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 941 GKPPHEAIYQACLLRFRPILMTTMAALLGALPLMLAGGAGAELRQPLGITMVGGLLLSQV 1000 GK EA A +R RPILMT++A +LG LPL ++ GAG+ + +GI ++GG++ + + Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 1001 LTLFTTPVIYLYFDRL 1016 L +F PV ++ R Sbjct: 1016 LAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 5e-07 Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 16/172 (9%) Query: 124 TYKAALAQAEGTLMQNQAQLKNAEIDLQRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRT 183 L + L Q ++++ +A+ + Q L+ + + ++RQ I Sbjct: 263 EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD---------KLRQTTDNIGL 313 Query: 184 NQGQVDDARLNLTFTEVRAPISGR-LGLRQVDIGNLVTSGDTTPLVVITQVKPISVVFSL 242 ++ + +RAP+S + L+ G +VT+ +T +V++ + + V + Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETL-MVIVPEDDTLEVTALV 372 Query: 243 PQQQIGTVVEQMNGPGQLAVTALDRNQDKVLAEGTLT--TLDNQIDSTTGTV 292 + IG + + V A + L G + LD D G V Sbjct: 373 QNKDIGFINVGQ--NAIIKVEAFPYTRYGYL-VGKVKNINLDAIEDQRLGLV 421 Score = 41.4 bits (97), Expect = 5e-06 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query: 80 ALGTVTAF-NTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQ 138 A G +T + +KP N + +++ +EG+ V+ GD+L + +A + + +L+Q Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 139 NQAQL--KNAEIDLQRYKGLYAEDSIAKQTLDT-QEAQVRQLQGTIR----TNQGQVDDA 191 + + L + E +V +L I+ T Q Q Sbjct: 146 ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Query: 192 RLNLT 196 LNL Sbjct: 206 ELNLD 210
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 33.2 bits (75), Expect = 0.002 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Query: 7 LALSILTTIGATAADSAWAAQTSVHLYNW------YDFIAPETPKAFQKETGTRVVLDTF 60 LALS LTT+ +A SA A L W Y+ +A E K F+K+TG +V ++ Sbjct: 10 LALSALTTMMFSA--SALAKIEEGKLVIWINGDKGYNGLA-EVGKKFEKDTGIKVTVEHP 66 Query: 61 DSAETAQGKLMVGRSGYDVVVITSNILPGLIKAGVLQELDRDR 103 D E ++ G D++ + G ++G+L E+ D+ Sbjct: 67 DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK 109
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 59.9 bits (145), Expect = 2e-12 Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 3/192 (1%) Query: 182 GLIAALSMI-QTLMLAALSVAREREQGTFDQLLVTPLTPLEILIGKAVPSVLIGLLQSTL 240 G++A +M T + R Q T++ +L T L +I++G+ + L Sbjct: 72 GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131 Query: 241 ILAIGLFWFRIPMAGSLLDLYLGLLVFTTACVGIGLSVSALSANMQQAMVYTFVIMMPLI 300 I + SLL + + A +G+ V+AL+ + + Y +++ P++ Sbjct: 132 IGVVAAALGYTQWL-SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPIL 190 Query: 301 LLSGLITPIHSMPETLQILTYADPLRFAIDLVRRVYLEGASLADISGNFIPMLSVAAVTL 360 LSG + P+ +P Q PL +IDL+R + L D+ + + + Sbjct: 191 FLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVIPF 249 Query: 361 PLAAWLFRNRLV 372 L+ L R RL+ Sbjct: 250 FLSTALLRRRLL 261
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 39.9 bits (93), Expect = 9e-06 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 13/175 (7%) Query: 205 AREWERGTLESLFVTPVRSAEILLAKIIPYFLVGLL-GLSMCLVSARLLFRVPIQGSLVL 263 R + T E++ T +R +I+L ++ L G + +V+A L + Q +L Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY---TQWLSLL 148 Query: 264 LLFSSMLY---LFVTLGIGLLISARTRNQFLASQVAILSSFLPALMLSGFLFDLRNVPTF 320 + F +LG+ + A + + F+ Q +++ P L LSG +F + +P Sbjct: 149 YALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVIT---PILFLSGAVFPVDQLPIV 205 Query: 321 IRLVGSILPATYFMELVKTLFLAGDNWHLALKNLLILAGYAV--FLLNAARLCTR 373 + LP ++ ++L++ + L + ++ L Y V F L+ A L R Sbjct: 206 FQTAARFLPLSHSIDLIRPIMLGHPVVDVCQ-HVGALCIYIVIPFFLSTALLRRR 259
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 63.3 bits (154), Expect = 3e-13 Identities = 47/296 (15%), Positives = 100/296 (33%), Gaps = 38/296 (12%) Query: 45 SLAFENSERIVALHAEEGDKVRAGQVLAELDTRTLRLRIETARARIGVQEQVLLRLR--- 101 +++ E R+ +L E+ + + EL+ R T ARI E + + Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 102 NGTRPQEVDQSRARLQAAQAEAELARLELVRLQRIAGGTDGKGVSRQSLDAAAARLKVAR 161 + Q+ A+ + E + + + +A ++ Sbjct: 238 DDFSSLLHKQAIAKHAVLEQENKYVEAV----NELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 162 AEVENQRKAWQLADIGPRDEDIAQAQAELEVARADLRLLEHYLSQAQLKAPRDATVRT-R 220 +N+ L + ++I EL + ++AP V+ + Sbjct: 294 QLFKNE----ILDKLRQTTDNIGLLTLELAKNEERQQASV-------IRAPVSVKVQQLK 342 Query: 221 LLEPGDMASPSRPVFALALTD-PKWVRAYVNERQLGRVHPGQKARVVTDSVPER---PVD 276 + G + + + + + D V A V + +G ++ GQ A + ++ P + Sbjct: 343 VHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLV 402 Query: 277 GRVGYISSVAEFTPKTVETEDLRTSLVYEIRVLLDDPE-------DRLRLGMPATV 325 G+V I+ A ED R LV+ + + +++ L GM T Sbjct: 403 GKVKNINLDA--------IEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTA 450
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 64.3 bits (156), Expect = 8e-15 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 9/140 (6%) Query: 6 RTPRSDGESTRARILEVAGRLFAQHGYANTASKAICEEAGADLAAINYHFGSRDALYKAV 65 R + + + TR IL+VA RLF+Q G ++T+ I + AG AI +HF + L+ + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 66 LVEGHKQFVSLHDLRELADSALPPETKLERFINAIVSRLLDDRSWQSKVCAREILAPTAH 125 L EL A P L ++ L + + + EI+ Sbjct: 63 WELSESNIGEL----ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEII----- 113 Query: 126 FASLIREEVMPKFEALERII 145 F M + +R + Sbjct: 114 FHKCEFVGEMAVVQQAQRNL 133
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.0 bits (67), Expect = 0.041 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 3/98 (3%) Query: 438 DVKVSVRDARSTADQSAAISSQTSAGMQQQFREIDQVATASHEMTATAQDVARSAAQAAD 497 K+S +A + + I+ + + +A + + TA V+ + A Sbjct: 352 SAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAA 411 Query: 498 AARGADQATRDGLALIDRTTQSIDSLAANLTSAMGQVE 535 AA+ + LA ID +D++ ++L + + + Sbjct: 412 AAKKSTANP---LASIDSALSKVDAVRSSLGAIQNRFD 446
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 5e-05 Identities = 44/263 (16%), Positives = 87/263 (33%), Gaps = 71/263 (26%) Query: 187 RLQIAQLQQGQRSQLDNQAPEELEPLVEQIN-HLLAHTEETLKRSRNALGNLGHALKTPL 245 + A++ Q + + + +A +L L QIN H + + + L + A + Sbjct: 143 NYKQAEIDQWKMASMAQEA--QLMALKAQINPHFMFNALNNI--RALILEDPTKARE--- 195 Query: 246 AVLVSLAE--REEMARQPELQQVLREQLEQIQQRLGRELGKARLVGEALPGAHFDCAEEL 303 +L SL+E R + Q L ++L + L +L + Sbjct: 196 -MLTSLSELMRYSLRYSNARQVSLADELTVVDSYL--QLASIQ----------------- 235 Query: 304 PSLCDTLRLIHGPHLQVSWSAPPGL---RLPWDREDLLEMLGNLLDNACKWA------DS 354 LQ P + ++P +L + L++N K Sbjct: 236 ----------FEDRLQFENQINPAIMDVQVP----PML--VQTLVENGIKHGIAQLPQGG 279 Query: 355 EVRLTVAQGEGMVRLKVDDDGPGILPDQRQAVLERGTRLDEQVSGHGLGLGIARD-IAEA 413 ++ L + G V L+V++ G L + ++ G GL R+ + Sbjct: 280 KILLKGTKDNGTVTLEVENTGSLALKNTKE--------------STGTGLQNVRERLQML 325 Query: 414 CGGRLSLE-DSPLGGLRVSVELP 435 G ++ G + V +P Sbjct: 326 YGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 9e-19 Identities = 31/117 (26%), Positives = 54/117 (46%) Query: 2 RLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLE 61 +L+ +D + L +L+R GY V ++ A+ DL++ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 ILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRR 118 +L + PVL+++A+ ++ I + GA DYL KPF EL I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 27.3 bits (60), Expect = 0.010 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%) Query: 21 QARDLGPDEALKLRDAGTIKSFEELNKNAIAKHPGSSVHDTELE----EEYGRYIYQVEL 76 R L + A+ ++ A I + ++ + T L EE R Y+V + Sbjct: 128 DKRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNV 187 Query: 77 R--DPQGVKWDLELDAATGAVLK 97 R P W +DAA G VL Sbjct: 188 RFLTPVPGNWIYMIDAADGKVLN 210
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 28.6 bits (63), Expect = 0.005 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 10/84 (11%) Query: 21 LEKLKSDSSLKQELEFKDKLQALMDKYGMTLHNIIAILDPKAPVTVSAAPQRRA------ 74 +E L + ++K E LQ M+ +I A KA +A +R+A Sbjct: 181 MEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQ 240 Query: 75 ----RALKVYKNPNNGEVVETKGG 94 RA Y P NG VV T G Sbjct: 241 QAAIRAANTYAMPANGSVVATAAG 264
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.9 bits (67), Expect = 0.004 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Query: 7 KQGAFTLLEMIVVLLVVSFIGTLLMQGLSYASKANQSLHQSLGRGQVR 54 +Q FTLLEM+++LL++ +++ L++ + + S Q+L R + + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVL--LAFPASRDDSAAQTLARFEAQ 47
>PilS_PF08805#PilS N terminal Length = 185 Score = 29.5 bits (66), Expect = 0.003 Identities = 5/31 (16%), Positives = 16/31 (51%) Query: 7 GFTLLEAVVALTLLAVVGGALFAWLNSAFRS 37 G TL+E ++ + ++ V+ + + + + Sbjct: 27 GATLMEVLLVVGVIVVLAASAYKLYSMVQSN 57
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 38.7 bits (90), Expect = 1e-06 Identities = 17/43 (39%), Positives = 31/43 (72%) Query: 12 QAAFTLLELLVVLVIVGAIAAVALPGLVRMQETWARRTALDDL 54 Q FTLLE++VV+VI+G +A++ +P L+ +E ++ A+ D+ Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDI 49
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 118 bits (297), Expect = 3e-37 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Query: 6 QQGFTLLEMIVVLVIIGMLMGLVGPRLFNQADKAKAQTADTQVKMLKGALLTMRLDIGRL 65 Q+GFTLLE++VV+VIIG+L LV P L +KA Q A + + L+ AL +LD Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66 Query: 66 PTEEEGLALLNTPPSDERLGAFWHGPYLEGGVPLDPWNRPYLYSDRPSAEQPFTLYSQGA 125 PT +GL L P+ L A ++ +P DPW Y+ + P + L S G Sbjct: 67 PTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVN-PGEHGAYDLLSAGP 125 Query: 126 DGQPGGKG 133 DG+ G + Sbjct: 126 DGEMGTED 133
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 185 bits (471), Expect = 9e-57 Identities = 104/404 (25%), Positives = 187/404 (46%), Gaps = 11/404 (2%) Query: 2 NFIYQAVDRKGRRVRGELCLPTRQDALRQLQRQGLTPLSLEVKR----------RNLGSR 51 + YQA+D +G++ RG + + A + L+ +GL PLS++ R +L + Sbjct: 3 QYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRK 62 Query: 52 RRLKAEELNMAIHELATMLAAGVSMADAVEAQERGARHPKLITALQAMANGLRQGQSFPV 111 RL +L + +LAT++AA + + +A++A + + P L + A+ + + +G S Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 112 VLESAGLDLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGALIYPAILVLS 171 ++ R +VAAGE +G+L L A E ++ R+ +Q A+IYP +L + Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 172 GVLAVATLFVFVVPKFANLLNET-AQLPWLAWAVLSIGVWSNESSGLLAFAVLLLAGGIA 230 + V+ L VVPK LP ++ + + A+L Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFR 242 Query: 231 VALRNPALRAHALDQLVRLPVVGEWLMQAEIAQWSKVLGTLLGNRVPLVEALLLSAAGVR 290 V LR R +L+ LP++G A++++ L L + VPL++A+ +S + Sbjct: 243 VMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMS 302 Query: 291 IARQRRTLERVTQDVRAGIALSAALEERQAVTSIGSSLVRVGEASGQLAEMLQSLATLYG 350 R L T VR G++L ALE+ + ++ GE SG+L ML+ A Sbjct: 303 NDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQD 362 Query: 351 EAGQARMKKALVLIEPLAILLIGSVFGLIITGVVLAITSANDMV 394 ++M AL L EPL ++ + +V I+ ++ I N ++ Sbjct: 363 REFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 32.6 bits (74), Expect = 0.001 Identities = 22/121 (18%), Positives = 42/121 (34%) Query: 116 LTPLLAAFFNAMLGYLVLCIFLLFSGVEPGWQLVLLPLALLPFLLCVTGLAWFLAGLGVY 175 L + A A L + + G L+ + L L + L Sbjct: 115 LGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPS 174 Query: 176 VRDIGQFVQFLLVLLLFISPVFYPLSFLPPVMQPYLYLNPLTIPVEMVRAILFDAPYPTL 235 + ++ +LF+S +P+ LP V Q PL+ ++++R I+ P + Sbjct: 175 YDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDV 234 Query: 236 G 236 Sbjct: 235 C 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 110 bits (277), Expect = 7e-29 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 1/128 (0%) Query: 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLRMPQIDGL 65 AT+L+ DDD +R L L + + V N + + DLV+ D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 +L+ RI++ + P++V+S A++A GA DYL KP DL L + RAL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF-DLTELIGIIGRALAEP 122 Query: 126 YLRVENQR 133 R Sbjct: 123 KRRPSKLE 130
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 272 bits (698), Expect = 3e-95 Identities = 75/231 (32%), Positives = 113/231 (48%), Gaps = 15/231 (6%) Query: 16 LACASLALAPTLSLAAS--------EEDPWESINRPIFTFN-DTLDTYALKPLAQGYQKV 66 L ++LAL TL + + DP E NR ++ FN + LD Y ++P+A ++ Sbjct: 3 LRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDY 62 Query: 67 TPNFVQDGVHNFFNNLGDVKNLANNLLQAKFHNAGVDTSRLLFNSTFGLAGLIDVATPMG 126 P ++G+ NF NL + + N LQ + V +R N+ G+ G IDVA Sbjct: 63 VPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMAN 122 Query: 127 LQ---RNDEDFGQTLGYWGVGSGPYVMLPFLGPSTLRDAPAKIPDIYVSPYHYMDDVRAR 183 + FG TLG++GVG GPYV LPF G TLRD + D ++ + Sbjct: 123 PKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPVLSWLTWPMSV 182 Query: 184 NVMFGINTVDTRANLLKSEKLI--SGDKYIFIRNAYLQNREFKVKDGEVED 232 + + ++TRA LL S+ L+ S D YI +R AY Q +F GE++ Sbjct: 183 G-KWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDFIANGGELKP 232
>PF06580#Sensor histidine kinase Length = 349 Score = 45.6 bits (108), Expect = 2e-07 Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 24/172 (13%) Query: 260 QIGELVSGLKDFAR--LDRAFSEEVDLND---CVRNAVLIARTAIKDKAEISSQLGELPL 314 + E+++ L + R L + + +V L D V + + +A +D+ + +Q+ + Sbjct: 192 KAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIM 251 Query: 315 IACAPSQINQVLL-NLLTNAAQAMERFGRILLKSWADERQVFLSVQDNGKGMPAEVLGRI 373 P + Q L+ N + + + + G+ILLK D V L V++ G Sbjct: 252 DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA-------- 303 Query: 374 FDPFFTTKPVGQGTGLGLSISYKIIQQHGG---TIRVASEPGRGTRFLISLP 422 K + TG GL + +Q G I+++ + G+ ++ +P Sbjct: 304 ------LKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.3 bits (169), Expect = 9e-17 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 8/190 (4%) Query: 23 ESARGKLLQTAAHLFRSKGYERTTVRDLASAVGIQSGSIFHHFKSKDEILRSVMEETILY 82 + R +L A LF +G T++ ++A A G+ G+I+ HFK K ++ + E + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 83 NTALMRAALAD-AEDLRERVLGLIRCELQSIMGGTGEAMAVLVYEWRSLSAEGQAYILGL 141 L A D + ++ L+S + + + + + A + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 142 RDIYEQMWLD----VLGEARLAGYCQG--DPFILRRFLTGALSWT-TTWFRPEGPMSLDQ 194 + D L A + G +S W L + Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189 Query: 195 LAEEALALVI 204 A + +A+++ Sbjct: 190 EARDYVAILL 199
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (299), Expect = 3e-34 Identities = 74/255 (29%), Positives = 121/255 (47%), Gaps = 10/255 (3%) Query: 13 DGQTIIVTGGGSGIGRCTAHELAALGAHVVLVGRKAEKLEKTAGEIVEDGGSVSWHACDI 72 +G+ +TG GIG A LA+ GAH+ V EKLEK + + D+ Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 73 REEEAVKTLVANILAERGTIHHLVNNAGGQYPSPLASISQKGFETVLRTNLVGGFLVARE 132 R+ A+ + A I E G I LVN AG P + S+S + +E N G F +R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 133 VFNQSMSKTGGSIVNMLADMWGGMP--GMGHSGAARSGMENFTRTAAVEWGHAGVRVNAV 190 V M + GSIV + ++ G+P M ++++ FT+ +E +R N V Sbjct: 127 VSKYMMDRRSGSIVTVGSNP-AGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 191 APG-------WIASSGMDTYEGAFKAVIPTLREHVPLKRIGSESEVAAAIVFLLSPGAAF 243 +PG W + + E K + T + +PLK++ S++A A++FL+S A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 244 VSGNTIRIDGAASQG 258 ++ + + +DG A+ G Sbjct: 246 ITMHNLCVDGGATLG 260
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 37.1 bits (85), Expect = 2e-04 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 13/158 (8%) Query: 340 LMLSLPQPAMAFQFEDLWLRPDQQGQRLLQRGQADEAAKRFEDFRWKGLSLYQARDYAAA 399 L++ P P + + L +++ + Q+ Q D+ KR E+ R K + + Sbjct: 131 LIVDAPDPK-ELEEQKKALEKEKEAKEQAQKAQKDKREKRKEE-RAKNRA-----NLENL 183 Query: 400 AQAFAQGDQADDHYNRGNALARQGELEAAVDAYEQALERQPQLVAAQRNK-ALVEELLRQ 458 A + ++ N + +Q E E +D E+ + Q Q AQ N +EEL ++ Sbjct: 184 TNAMSNPQNLSNNKNLSELIKQQRENE--LDQMERLEDMQEQ---AQANALKQIEELNKK 238 Query: 459 RQEQAAQQQAGENKEQRQEASQQSPPSGSSQRPPRDAA 496 + E+A +Q+A + + + SQ+SP S + P D+A Sbjct: 239 QAEEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSA 276
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 5e-21 Identities = 30/129 (23%), Positives = 59/129 (45%) Query: 3 IHVLVVEDNFDLAGTVIDYLEAAGVVCDHARDGQAGLNLARANRYDVILLDIMLPRINGR 62 +LV +D+ + + L AG + A D+++ D+++P N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 QVCRQLREAGLQTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRS 122 + ++++A PVL+++A +T + + GA DYL KPF+L EL+ + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 GQAQRLQVD 131 + +L+ D Sbjct: 124 RRPSKLEDD 132
>PF07675#Cleaved Adhesin Length = 1358 Score = 32.4 bits (73), Expect = 0.005 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 64 PAPDSYYFKGSVGTAGLPPKLREMLDTPPYKSIGAMQLLGNWDDDDEEEDDDAPSDDAYV 123 PA + G G P + + K M+ G D D E +DD+P+ Y Sbjct: 480 PASGKMWIAGDGGNQ--PARYDDFAFEAGKKYTFTMRRAGMGDGTDMEVEDDSPASYTYT 537 Query: 124 VVR--QPLADGKTLYLYDND--AAGSID 147 V R + +G T ++ D AAG+ + Sbjct: 538 VYRDGTKIKEGLTATTFEEDGVAAGNHE 565
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 71.0 bits (174), Expect = 1e-14 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 11/175 (6%) Query: 613 IEAATNEVIKQSELII-LVLVYICVAAMCMITFRSFAATLCIVLPLILTSVLGNALMAAL 671 ++ + +EV+K L ++LV++ + + ++ ATL + + + + A++AA Sbjct: 333 VQLSIHEVVK--TLFEAIMLVFLVMY----LFLQNMRATLIPTIAVPVVLLGTFAILAAF 386 Query: 672 GIGVKVATLPVIALGVGIGVDYGIYIYTRLESFLRM-GLPLQEAYYETLRSTGKAVLFTG 730 G + T+ + L +G+ VD I + +E + LP +EA +++ A++ Sbjct: 387 GYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIA 446 Query: 731 LCLAIGVATWIF---SAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLINPAK 782 + L+ F S + + + ++ AL L PAL L+ P Sbjct: 447 MVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVS 501 Score = 42.9 bits (101), Expect = 6e-06 Identities = 35/221 (15%), Positives = 80/221 (36%), Gaps = 15/221 (6%) Query: 251 LITLVLLYWFTKCIRSTIAVLITTLVAVLWQLGLLNLVGFGLDPYSMLVPFLIFAIGISH 310 ++ +++Y F + +R+T+ I V +L +L G+ ++ +M L + + Sbjct: 349 MLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDD 408 Query: 311 GVQKINGIA-LQSSGADNALMAARLTFRQLFLPGMIAILADAVGFITLLVID--IGVI-R 366 + + + + A + Q+ + + + FI + G I R Sbjct: 409 AIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 367 ELAIGASIGVAVIVFTNLILLPVAISYI--GISKKAVQRSKDDAVREHPFWRLLSNFASP 424 + +I +A+ V LIL P + + +S + + + + N + Sbjct: 469 QFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTN 528 Query: 425 KVAPV------SIAIALLMLGGGLWYGKHLKIG---DLDQG 456 V + + I L++ G + L + DQG Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQG 569 Score = 33.3 bits (76), Expect = 0.005 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 626 LIILVLVYICVAAMCMITFRSFAATLCIVLPLILTSVLGNALMAALGIGVKVATLPVIAL 685 I V+V++C+AA+ + S++ + ++L + L V V + + Sbjct: 877 AISFVVVFLCLAAL----YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLT 932 Query: 686 GVGIGVDYGIYIYTRLESFLRM-GLPLQEAYYETLRSTGKAVLFTGLCLAIGV 737 +G+ I I + + G + EA +R + +L T L +GV Sbjct: 933 TIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGV 985
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.008 Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 231 GDIVFQPDALPEAIAREPLSEEQKSSLLTYGADEPL 266 G+I F L E + LSEE+K+S+ + G P Sbjct: 102 GEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPF 137
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 28.7 bits (64), Expect = 0.028 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 7/58 (12%) Query: 65 LVVVVGGDGSML----GAARALARHKVPVLGINRGSLG-FLTDIRPDELEAKVGEVLD 117 LV+ + GDG L + PV+G + SL + P ++ ++D Sbjct: 53 LVIFLSGDGGWATLDKAVGGILQQQGWPVVGWS--SLKYYWKQKDPKDVTQDTLAIID 108
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 28.6 bits (63), Expect = 0.020 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Query: 36 QRHPLAASRWRQEPERLAAWLREQERQPQHLAAWLAQ 72 Q+ +A + WR++ +RL AW QERQ AA LA+ Sbjct: 92 QKVDIALNSWREKKQRLQAWQTLQERQST--AALLAE 126
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.4 bits (123), Expect = 4e-09 Identities = 34/206 (16%), Positives = 67/206 (32%), Gaps = 18/206 (8%) Query: 165 AAVEPQRLQMAAEEQWYAAGPAAPKAPPAEPPRKQEDEQTARLAQLVKQQRQQLAALARQ 224 A +E R Q+ + P K P + +E+ RL L+K+Q Q Sbjct: 146 ARLEQTRYQILSRSIELNKLPEL-KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ 204 Query: 225 QEQRLAGLARQHEEELARREQDARGQLDILRSEVLSLQQALERQARENAELQQRLLEQGE 284 +E L + + R + +S + + A + +LEQ Sbjct: 205 KELNLDKKRAE-RLTVLARINRYENLSRVEKSRL----DDFSSLLHKQAIAKHAVLEQ-- 257 Query: 285 QFQRNREELTRQLRFIENQGRNETDLLRSEFADELEARVAAAVAGYKEQVSIRDVELAYR 344 + E +LR +++ + + SE + +K ++ +L Sbjct: 258 --ENKYVEAVNELR----VYKSQLEQIESEIL-SAKEEYQLVTQLFKNEILD---KLRQT 307 Query: 345 NELDQQLEQELAELRAERDRLAAQGP 370 + L ELA+ + + P Sbjct: 308 TDNIGLLTLELAKNEERQQASVIRAP 333
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.8 bits (61), Expect = 0.026 Identities = 23/113 (20%), Positives = 33/113 (29%), Gaps = 5/113 (4%) Query: 55 AERHLQSARQYFTEQRALHAYIQQQAPNVRQADAAAPQAQIDPAALQGMVTASAAQAGLS 114 A+R + + RA + Y +V A Q+ A S A A L Sbjct: 230 AKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLG 289 Query: 115 VERLDNEGEGAVQVALQPAPFAKLLPWLEQLNGQ-----GVQVAEAGLDRQVD 162 AV A W +Q G+ A+ GL V+ Sbjct: 290 RVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVN 342
>PilS_PF08805#PilS N terminal Length = 185 Score = 35.7 bits (82), Expect = 7e-05 Identities = 11/45 (24%), Positives = 24/45 (53%) Query: 1 MRLQRGFTLLELLIAIAIFALLALATYRMFDSVMQTDQATRVQEQ 45 +G TL+E+L+ + + +LA + Y+++ V Q++ Q Sbjct: 22 KEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNN 66
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 36.4 bits (84), Expect = 8e-06 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 1 MRRARGFTLLEVLVALAIF----AMVAASVLSASARSLQNASRLEDKTLAMWIADNRLNE 56 + RGFTLLE++V + I ++V +++ ++ + + + L + +L+ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 57 LQLEQTPP 64 T Sbjct: 64 HHYPTTNQ 71
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 143 bits (361), Expect = 3e-46 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 32/183 (17%) Query: 5 RGFTLIELMVVMVIISVLIGLAVLSTGFASTSRELDSEAERLAGL---IGVLTDEAVLDN 61 RGFTL+E+M++++++ V G+ +L+ SR+ DS A+ LA + + + Sbjct: 4 RGFTLLEMMLILLLMGVSAGMVLLAFP---ASRD-DSAAQTLARFEAQLRFVQQRGLQTG 59 Query: 62 REYGLRLERDAYQVLRY------DEAKA-------RWLPVARDSHRLPEWAELTFELDGQ 108 + +G+ + D +Q L D A A RWLP+ + + G Sbjct: 60 QFFGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGR------VATSGSIAGG 113 Query: 109 PLVLAGSKGEKEQKKGTDQPQLLILSSGELSPFRLRLAERGPEGRALSLSSDGFRLPRVE 168 L LA ++GE D P +LI GE++PFRL L E ++ ++ G LP + Sbjct: 114 KLNLAFAQGEAWTPG--DNPDVLIFPGGEMTPFRLTLG----EAPGIAFNARGESLPEPQ 167 Query: 169 VAR 171 A+ Sbjct: 168 EAQ 170
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 212 bits (541), Expect = 3e-74 Identities = 75/138 (54%), Positives = 95/138 (68%), Gaps = 3/138 (2%) Query: 10 RQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNF 69 +Q GFTL+EIMVV+VI+G+LA+LVVP +M ++A A DI A+ ALDMYKLDN Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNH 64 Query: 70 AYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLG 129 YP+T QGLE+LV+ PT P N+NK+GY+K+LP DPWGN Y + PG G +DL S G Sbjct: 65 HYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSAG 124 Query: 130 ADGKEGGSDNDADIGNWD 147 DG+ G D DI NW Sbjct: 125 PDGEMGTED---DITNWG 139
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 501 bits (1292), Expect = e-180 Identities = 213/406 (52%), Positives = 278/406 (68%), Gaps = 2/406 (0%) Query: 1 MAAFEYLALDPSGRQQKGVLEADSARQVRQLLRERQLAPLDVKPTRTREQSGQGGRLTFA 60 MA + Y ALD G++ +G EADSARQ RQLLRER L PL V R +Q L+ Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 RG--LSARDLALVTRQLATLVQAALPIEEALRAAAAQSTSQRIQSMLLAVRAKVLEGHSL 118 R LS DLAL+TRQLATLV A++P+EEAL A A QS + ++ AVR+KV+EGHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 AGSLREFPTAFPELYRATVAAGEHAGHLGPVLEQLADYTEQRQQSRQKIQLALLYPVILM 178 A +++ FP +F LY A VAAGE +GHL VL +LADYTEQRQQ R +IQ A++YP +L Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VASLAIVGFLLGYVVPDVVRVFIDSGQTLPLLTRVLIGVSDWVKAWGALAFVAAIGGVIG 238 V ++A+V LL VVP VV FI Q LPL TRVL+G+SD V+ +G +A + G + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 FRYALRKDAFRERWHGFLLRVPLVGRLVRSTDTARFASTLAILTRSGVPLVEALAIAAEV 298 FR LR++ R +H LL +PL+GR+ R +TAR+A TL+IL S VPL++A+ I+ +V Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 IANRIIRNEVVKAAQKVREGASLTRSLEATGQFPPMMLHMIASGERSGELDQMLARTARN 358 ++N R+ + A VREG SL ++LE T FPPMM HMIASGERSGELD ML R A N Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 QENDLAAQIGLMVGLFEPFMLIFMGAVVLVIVLAILLPILSLNQLV 404 Q+ + ++Q+ L +GLFEP +++ M AVVL IVLAIL PIL LN L+ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 49.2 bits (117), Expect = 3e-09 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 19/148 (12%) Query: 32 APALLAVALIIAMSISLAWQAAG--WLRLQRSPVAVAASPVSHESIRSDPTRLAR--LFG 87 +P+++ L + + Q A W V++ ++ R P L LFG Sbjct: 10 SPSVIRRILFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPAQARQQPVTLNDFTLFG 69 Query: 88 TSAQDPNAPP----------PATNLDLVLKGSFVQSDPKLSSAIIQRQGDKPHRYAVGGE 137 S + N P + L+L L G D S AII + ++ V E Sbjct: 70 VS-PEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQ-FSRGVNEE 127 Query: 138 ISDG--VKLHAVYRDRVELQRGGRLESL 163 + G K+ ++ DRV LQ GR E L Sbjct: 128 V-PGYNAKIVSIRPDRVVLQYQGRYEVL 154
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 594 bits (1533), Expect = 0.0 Identities = 217/631 (34%), Positives = 345/631 (54%), Gaps = 35/631 (5%) Query: 41 AFVPAGNQQEAHWTINLKDADIREFIDQISEITGETFVVDPRVKGQVSVVSKAQLSLSEV 100 F PA ++ ++ + K DI+EFI+ +S+ +T ++DP V+G ++V S L+ + Sbjct: 21 LFRPAAAEE---FSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQY 77 Query: 101 YQLFLSVMSTHGFTVVAQGDQA-RIVPNAEAKTEAG--GGQSAP---DRLETRVIQVQQS 154 YQ FLSV+ +GF V+ + ++V + +AKT A +AP D + TRV+ + Sbjct: 78 YQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNV 137 Query: 155 PVSELIPLIRPLVPQYGHLAAV--PSANALIISDRSANIARIEDVIRQLDQKGSHDYSVI 212 +L PL+R L G + V +N L+++ R+A I R+ ++ ++D G + Sbjct: 138 AARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTV 197 Query: 213 NLRYGWVMDAAEV---LNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQ 269 L + D ++ LN S+ G+ A V+AD RTN +++ G P +R +++ + + Sbjct: 198 PLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIK 257 Query: 270 SLDTPTARSANTRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRAD 329 LD A NT+VI L++ A L E L IS M++ + NI+I+A Sbjct: 258 QLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDK--NIIIKAH 315 Query: 330 ESTNALVLLADPDTVNALEDIVRQLDVPRAQVLVEAAIVEISGDIQDAVGVQWAINKGGM 389 TNAL++ A PD +N LE ++ QLD+ R QVLVEA I E+ +G+QWA GM Sbjct: 316 GQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGM 375 Query: 390 GGTKTNFANTGLSIGTLLQSLESNKAPESIP----------DGAIVGIGSSSFGALVTAL 439 T F N+GL I T + ++ +G G ++ L+TAL Sbjct: 376 ----TQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTAL 431 Query: 440 SANTKSNLLSTPSLLTLDNQKAEILVGQNVPFNTGSYTTNSEGASNPFTTVERKDIGVSL 499 S++TK+++L+TPS++TLDN +A VGQ VP TGS TT+ + N F TVERK +G+ L Sbjct: 432 SSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGD---NIFNTVERKTVGIKL 488 Query: 500 KVTPHINDGAALRLEIEQEISALLPNAQQRNNT-DLITSKRSIKSTILAENGQVIVIGGL 558 KV P IN+G ++ LEIEQE+S++ A ++ + R++ + +L +G+ +V+GGL Sbjct: 489 KVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGL 548 Query: 559 IQDDVSQAESKVPLLGDIPLLGRLFRSTKDTHTKRNLMVFLRPTVVRDSAGLAALSGKKY 618 + VS KVPLLGDIP++G LFRST +KRNLM+F+RPTV+RD S +Y Sbjct: 549 LDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQY 608 Query: 619 SDIR-VIDGTRGPEGRPSILPTNANQLFDGQ 648 + RG E ++L + +++ Q Sbjct: 609 TAFNDAQSKQRGKENNDAMLNQDLLEIYPRQ 639
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 114 bits (287), Expect = 6e-33 Identities = 74/254 (29%), Positives = 110/254 (43%), Gaps = 18/254 (7%) Query: 10 GKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAE---ALGEHAWFVAMDVA 66 GK+A +TGAA+GIG ++ L ++G + D + E+ +V A HA DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 67 QEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAK 126 + A + + G +D LV A + P + +LS EW T +VN TG ++ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRP--GLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 YCTPYLRA-HNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPE-IRVNAL 184 + Y+ +G+IV + S A AYA+SK + T L L IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 SPG----------WIDTREAAEREAAPLTELDHDQHLVGRVGTVEDVASLVAWLLSEDAG 234 SPG W D A + L L ++ D+A V +L+S AG Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPL-KKLAKPSDIADAVLFLVSGQAG 244 Query: 235 FVTGQEFLVDGGMT 248 +T VDGG T Sbjct: 245 HITMHNLCVDGGAT 258
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.5 bits (68), Expect = 0.006 Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 84 AAGQPSQPIGGLPATPPATQPPAQAQAQAPAASLPPSQPQPPAAPPSPPPA-EKRLDANN 142 A P+ P P QPP Q P P Q QP A P PP E AN Sbjct: 565 AKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANA 624 Query: 143 LPQSWSVQLASLSNRARAEELQKTL 167 + V LAS A + L K L Sbjct: 625 AVNTGGVGLASTLWYAESNALSKRL 649
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 183 bits (467), Expect = 4e-56 Identities = 74/417 (17%), Positives = 144/417 (34%), Gaps = 96/417 (23%) Query: 7 RRLTVFLVAVGLIALAFFLHWWFIGRHVESTDNAYVQGEIT------RVASQLGARVEEV 60 R + F++ +IA + VE A G++T + + V+E+ Sbjct: 58 RLVAYFIMGFLVIAFI-----LSVLGQVEIV--ATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 61 LVRDNQHVDKGQLLVRLEDADF--------------KLAVERAQA--------------- 91 +V++ + V KG +L++L +L R Q Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 92 -----------------------ALATREAELAQARSKLVQQGSLIAASAADVNASQATL 128 +T + + Q L ++ + A +N + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 129 GRAQIDLNRAEALRKPGYVS-------EERVTTLTADNHVARSQL---------AKARAD 172 + L+ +L ++ E + + V +SQL AK Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 173 LEAQRVQRDTLGAEIKRLEAQIASARTELAQAEINLSRTLIHSPISGLVGQRSAR-NGQY 231 L Q + + L ++++ I ELA+ E ++I +P+S V Q G Sbjct: 291 LVTQLFKNEILD-KLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 232 VQVGTHLLSLVPDED-IWVQANFKETQVGRMRDGQKARLTFDAFPDT---PIDGRIDSLF 287 V L+ +VP++D + V A + +G + GQ A + +AFP T + G++ ++ Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Query: 288 AASGAQFSLLPPDNATGNFTKVVQRIPVKIVFEADNPLHGRIRPGMSVEAEVELRDR 344 + D G V+ I + + + + GM+V AE++ R Sbjct: 410 LDA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAVTAEIKTGMR 457
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 33.2 bits (75), Expect = 0.003 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 192 APHTLLEGVKKLPPATW-MSVDLDGSCEQRTWWT---LDYG--PRPDERELTLDDWQERV 245 AP +L E K++P W V+ S E++ T + YG +PD + TL +WQ+++ Sbjct: 498 AP-SLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQM 556 Query: 246 LDGLREAV 253 LD L EAV Sbjct: 557 LDRLNEAV 564
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 3e-04 Identities = 15/53 (28%), Positives = 19/53 (35%) Query: 197 LAVDPQCSRPGVGEALVRHLVEHFMSRELAYLDLSVLHNNQQAKALYRKLGFR 249 +AV + GVG AL+ +E L L N A Y K F Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 2e-14 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 7/132 (5%) Query: 786 LDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILMDGEMP 845 + ILVA+D+ + V+ L++ GY VR+ N L++ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD--LVVTDVVMP 58 Query: 846 EMDGFEATRLIRREERAQGWPRVPIVALTAHILDEHRRAGIEAGMDAYLGKPVDRAELYA 905 + + F+ I++ P +P++ ++A E G YL KP D EL Sbjct: 59 DENAFDLLPRIKKA-----RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113 Query: 906 TLERLLGQPSRQ 917 + R L +P R+ Sbjct: 114 IIGRALAEPKRR 125
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 38.5 bits (89), Expect = 4e-05 Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 241 QYFGLSRFAFANGHPYWGYRFLGWGMHYIQDITQPYHS 278 ++ L+R+ + G+ +LG MHY DI PYH Sbjct: 128 KFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHP 165
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 3e-06 Identities = 57/281 (20%), Positives = 94/281 (33%), Gaps = 13/281 (4%) Query: 79 ALPLVLLSILSGVIADNHDRRKIMLWGLSFEMTGAMFATLLAFLGYLDPVLLIISILWIS 138 AL + + G ++D RR ++L L A + + P L ++ I I Sbjct: 53 ALMQFACAPVLGALSDRFGRRPVLLVSL-------AGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 139 LGGS-VTIPAWQAAVNEQVPARMVSDAVLLNSVNYNVARAAGPALGGLLLSAVGPAWVFL 197 G + T A + + + S + AGP LGGL+ P F Sbjct: 106 AGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFF 164 Query: 198 FNSFCY-MALIWAIWQWRRDVPKRSLPPEGILEGVTAALRFTQYSTVTRLVMMRSFAFGL 256 + + + + P A+ R+ + TV +M F L Sbjct: 165 AAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQL 224 Query: 257 SASAVWALLPLLAHRNPDGDAAIYGYMLGALG-LGAILGSTQVSRLRQRIGSSRLISLAG 315 AL + DA G L A G L ++ + + R+G R + L Sbjct: 225 VGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGM 284 Query: 316 FTLALILLTLGLVDNLWVLFPVLIL--GGGCWIGALATYNS 354 + L W+ FP+++L GG + AL S Sbjct: 285 IADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLS 325 Score = 40.6 bits (95), Expect = 1e-05 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 12/189 (6%) Query: 12 PLKPEGQAAKPERTGTWAPFSIQAFRIIWICNLFANLGTWA--QSVAAAWVVTDA---HA 66 K E + + E A F + + Q AA WV+ H Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHW 243 Query: 67 SPLMVA-MIQVAAALPLVLLSILSGVIADNHDRRKIMLWGLSFEMTGAMFATLLAFLGYL 125 + + L + ++++G +A R+ ++ G+ + TG L + Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG------YILLAFA 297 Query: 126 DPVLLIISILWISLGGSVTIPAWQAAVNEQVPARMVSDAVLLNSVNYNVARAAGPALGGL 185 + I+ + G + +PA QA ++ QV + ++ GP L Sbjct: 298 TRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 186 LLSAVGPAW 194 + +A W Sbjct: 358 IYAASITTW 366 Score = 34.4 bits (79), Expect = 0.001 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 8/142 (5%) Query: 277 AAIYGYMLGALGLGAILGSTQVSRLRQRIGSSR--LISLAGFTLALILLTLGLVDNLWVL 334 A YG +L L + + L R G L+SLAG + ++ LWVL Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATA--PFLWVL 99 Query: 335 FPVLILGG-GCWIGALATYNSAVQILVPDWIKARALALYQTALYGGLALGSFLWGHLAET 393 + I+ G GA+A + + + +AR G+ G L G + Sbjct: 100 YIGRIVAGITGATGAVAG--AYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG- 156 Query: 394 MTVHGALLAAGCLLLASVILLY 415 + H AA L + + Sbjct: 157 FSPHAPFFAAAALNGLNFLTGC 178
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.9 bits (140), Expect = 3e-11 Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 4/209 (1%) Query: 26 VIIALAFFFDSMDLAMMTFLLGSIKAEFGLDSAQA---GLLASSSFFGMVIGAALSGMLA 82 ++I D++ + ++ +L + + + G+L + A + G L+ Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 83 DRFGRKPVFQASIVLWGLASYLCSTAGDLDSLTFYRVLLGIGMGMEFPIAQSLLSEMIPA 142 DRFGR+PV S+ + + +TA L L R++ GI G +A + ++++ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDG 126 Query: 143 SRRGKYIALMDGFWPLGFVAAGCLSYFLLPLTGWRSIFLVLALPAVFVLAIRFLIPESPR 202 R ++ M + G VA L + + F AL + L FL+PES + Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHK 186 Query: 203 WLEQAGRREQADRVLRDIEARVMRSLGLT 231 + RRE + + AR M + Sbjct: 187 GERRPLRREALNPLASFRWARGMTVVAAL 215 Score = 30.6 bits (69), Expect = 0.012 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 9/167 (5%) Query: 286 LSALLQQSGFAVTQSVYYTVLISLAGIPGFLCAAWL---VESWGRKPSCVLMLLGGGAMA 342 L LL+ + + +Y +L++L + F CA L + +GR+P ++ L G Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 343 YAYGQTAVFGGSLALLIGFGLAMQFFLFGMWAVLYTYTPELYPTSARATGSGFASAVGRI 402 L +L G + AV Y ++ RA GF SA Sbjct: 88 AIMA----TAPFLWVLY-IGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 403 GSLLGPLVTGLVLPLTGQGGVFTLGALCFGVAALVVWAFGIETRGRT 449 G + GP++ GL+ + F A G+ L E+ Sbjct: 143 GMVAGPVLGGLMGGFSPHAP-FFAAAALNGLNFLTGCFLLPESHKGE 188
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 4e-10 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%) Query: 27 KASRQGSEQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDT 86 + ++Q +++ RQ ILD A+RL + GV + +A A V A ++FKD DL ++ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 87 FALFVERNAEALSAFWSSVEGDLQEMAAVLADD-------PGARGSLVERIVELAVQYVQ 139 + L E + + GD + + R L+E I + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 140 VQLTERREHLLAEQAFR 156 + + ++ + L +++ Sbjct: 123 MAVVQQAQRNLCLESYD 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.5 bits (165), Expect = 1e-14 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 3/129 (2%) Query: 21 VLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLT 80 +L+ DD A I + ++L S AG D S+ +++ D+VMP + Sbjct: 6 ILVADDDAAIRTVLNQAL-SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 81 LLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRSY 140 LL + A D+P++V+S + A GA DYL K D EL+ I Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 141 IALQQRDEA 149 + E Sbjct: 123 KRRPSKLED 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.8 bits (124), Expect = 2e-09 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 13/141 (9%) Query: 2 RIGIVNDMPLAVEALRRALAFEPQHQIVWVASNGAEAVTQCAADTPDVVLMDLLMPVMDG 61 I + +D L +AL+ V + SN A AA D+V+ D++MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEATRRIMAESPCAIVIVTVDIEQNVHRVFEAMGYGALDAVNTP----------ALGIGN 111 + RI P V+V + + +A GA D + P + Sbjct: 63 FDLLPRIKKARPDLPVLV-MSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 112 PQTAAAPLLRKIQNVGWLIGQ 132 P+ + L Q+ L+G+ Sbjct: 122 PKRRPSKLEDDSQDGMPLVGR 142
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 7e-16 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 644 QRKRILVVDDSLTVRELERKLLLGRGYDVAVAVDGMDGWNALRSEHFDLLITDIDMPRMD 703 ILV DD +R + + L GYDV + + W + + DL++TD+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 704 GIELVTLVRRDSRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDEAL 756 +L+ ++ LPV+V+S ++ + + GA YL K E + Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 29.0 bits (64), Expect = 0.033 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 3/76 (3%) Query: 249 QPIGVPLSFVFRRTSEAPRGARPKAVSDGARPVVAAAVERASVRPSPPPPAKPRQRLSSL 308 P P F + + A A+P+ E S P+ S L Sbjct: 155 LPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPL 214 Query: 309 VPPASGQPL---ASPV 321 + P QPL A+PV Sbjct: 215 ITPHQTQPLPTVAAPV 230
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 6e-04 Identities = 15/27 (55%), Positives = 17/27 (62%) Query: 304 VAGWLSDRIGRKPVLLAGLLLATLFYF 330 V G LSDR GR+PVLL L A + Y Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYA 88 Score = 32.1 bits (73), Expect = 0.005 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 17/113 (15%) Query: 63 IFALMAFAAGFLVRPFGALVFGRLGDMIGRKYTFLVTILLMGLSTFAVGLLPTYASIGVA 122 ++ALM FA A V G L D GR+ LV++ + + P Sbjct: 51 LYALMQFAC--------APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW----- 97 Query: 123 APIILVTLRMLQGLALGGEYGGAAIYVAEHAPANKRGSYTSWIQSTATLGLLL 175 +L R++ G+ G A Y+A+ ++R + ++ + G++ Sbjct: 98 ---VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 3e-13 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 11/130 (8%) Query: 2 KTRVILVDDHALTLIGMRYLLSAYD-DLRIVAQAQDADGLLAQLEAHPCDLLITDLMMPG 60 +++ DD A + LS D+RI + A + A DL++TD++MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATL---WRWIAAGDGDLVVTDVVMPD 59 Query: 61 SQQADGLRLVQKVRRRYPDLPIIVVTMLGNPALVSSLLKLGIHGLVSK----RGMLDDLP 116 + L+ ++++ PDLP++V++ + G + + K ++ + Sbjct: 60 ---ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 117 KAIRHAGRRP 126 +A+ RRP Sbjct: 117 RALAEPKRRP 126
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 80.4 bits (198), Expect = 5e-22 Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 5 LQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQG 64 LQ + + G G + K +T +Y GTL DGT+FDS+ + G+P +VI GW + Sbjct: 128 LQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKP--ATFQVSQVIPGWTEA 185 Query: 65 LMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEV 108 L M G +FVP+ LAYG R VG I P+ L+F+I L+ V Sbjct: 186 LQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 64.5 bits (157), Expect = 2e-13 Identities = 68/380 (17%), Positives = 134/380 (35%), Gaps = 57/380 (15%) Query: 40 IALPSLQRSFGGDLAALSWIMSAFPFVGVFGGIAAGLLVRRWGDRRLLTGGLAILGGASL 99 ++LP + F A+ +W+ +AF G G L + G +RLL G+ I S+ Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 100 LGASMQDFA-WLLATRFVEGLGFLIVVVAAPAVLHRITSETRRSVVFGLWSTFMAGGIAL 158 +G F L+ RF++G G V+ R + R FGL + +A G + Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 159 SMLFGPLLADWRADWQLSALLVLVAALLLPF--SVPADDGRRAAGVRPAGLGTLLKVPAI 216 G ++A + W L+ ++ + +PF + + R G+ +L I Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGI--ILMSVGI 211 Query: 217 TLLALGFTTYNLQFFALMTF---------------------------------------- 236 L T+Y++ F + Sbjct: 212 VFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGT 271 Query: 237 ------LPVFLMQR---LGVALETAGLIGAAIVAANALGNVAAGFILSRGIRPGALLAST 287 + ++M+ L A + +I ++ G + + RG + T Sbjct: 272 VAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVT 331 Query: 288 AILMGLTGAAFFHAATPGLLAIALGFVFSAVAGMLPTTVLATAPLASPAPSLTPLAIGWV 347 + + A+F T + I + FV ++ TV++T +S + + Sbjct: 332 FLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT--KTVISTIVSSSLKQQEAGAGMSLL 389 Query: 348 MQGNYLGQVIGPLLIGLIVS 367 ++L + G ++G ++S Sbjct: 390 NFTSFLSEGTGIAIVGGLLS 409
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 64.3 bits (156), Expect = 6e-15 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 10 ERGRQRRRAMLDAATQAFLEHGFEGTTLDMVIERAGGSRGTLYSSFGGKEGLFAAVIA-- 67 + ++ R+ +LD A + F + G T+L + + AG +RG +Y F K LF+ + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 68 --HMIEEIFDDSADQPR-PAATLSATLEHFGRRFLT 100 ++ E + A P P + L L H +T Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT 102
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 399 bits (1027), Expect = e-136 Identities = 138/488 (28%), Positives = 206/488 (42%), Gaps = 59/488 (12%) Query: 51 GAGGADELKAIRSTTLPNGKQVTRYEQFHNGVRVVGEAITEVKGPGKSVAAQRSGHFVAN 110 G + L I + G V R+EQ +G + G+ + SG + N Sbjct: 69 GGQARERLSLIGNKLDELGHTVMRFEQAIAASLCMGAVLVAHVNDGE--LSSLSGTLIPN 126 Query: 111 IAADLPGSTTAAVSAEQVLAQAKS------LKAQGRKTENDKVELVIRLGENNIAQLVYN 164 + T AA+S +Q AK K + E LVI E +L Y Sbjct: 127 LDKRTL-KTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEET-PRLAYE 184 Query: 165 VSYLIPGEGLSRPHFVIDAKTGEVLDQWEGLAHAEAGGPG---------------GNQKI 209 V+ ++IDA G+VL++W + A+ GG G+QK Sbjct: 185 VNVRFLTPVPGNWIYMIDAADGKVLNKWNQMDEAKPGGAQPVAGTSTVGVGRGVLGDQKY 244 Query: 210 GKYTYGSDYGPLIVNDRCEMDDGNVITVDMNSSTDDSKTTPFRFACPTNTYKQVNGAYSP 269 TY S YG + D + T D + T + + Q +Y Sbjct: 245 INTTYSSYYGYYYLQDNTR--GSGIFTYDGRNRTVLPGSLW------ADGDNQFFASYDA 296 Query: 270 -LNDAHFFGGVVFKLYRDWFG---TSPLTHKLYMKVHYGRSVENAYWDGTAMLFGDG-AT 324 DAH++ GVV+ Y++ G + VHYGR NA+W+G+ M++GDG Sbjct: 297 AAVDAHYYAGVVYDYYKNVHGRLSYDGSNAAIRSTVHYGRGYNNAFWNGSQMVYGDGDGQ 356 Query: 325 MFYPLV-SLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRGKNDFLI 383 F P +DV HE++H T+ +GL+Y+ +SG +NEA SD+ G EFY D+ I Sbjct: 357 TFLPFSGGIDVVGHELTHAVTDYTAGLVYQNESGAINEAMSDIFGTLVEFYANRNPDWEI 416 Query: 384 GYDIKK---GSGALRYMDQPSRDGRSIDNASQYYNGID----VHHSSGVYNRAFYLLANS 436 G DI ALR M P++ G D+ S+ Y G VH +SG+ N+A YLL+ Sbjct: 417 GEDIYTPGVAGDALRSMSDPAKYGDP-DHYSKRYTGTQDNGGVHTNSGIINKAAYLLSQG 475 Query: 437 --------PGWDTRKAFEVFVDANRYYWTATSNYNSGACGVIRSAQNRNYS----AADVT 484 G K ++F A YY T TSN++ +++A + S V Sbjct: 476 GVHYGVSVTGIGRDKMGKIFYRALVYYLTPTSNFSQLRAACVQAAADLYGSTSQEVNSVK 535 Query: 485 RAFSTVGV 492 +AF+ VGV Sbjct: 536 QAFNAVGV 543
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.019 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 11/128 (8%) Query: 52 AVWMIWSTVTVRLNSAGFAFSNDQLFLLAALPSISGATLRVFYSFMVPIFGGRRWTALST 111 A+W+I+ ++ S L L S++ A + + G RR L Sbjct: 231 ALWVIFGEDRFHWDATTIGIS---LAAFGILHSLAQA---MITGPVAARLGERRALMLGM 284 Query: 112 ASMLIPCIWLGFAVQDPSTPYWVFALIALLCGFGGGNFASSMSNISFFYPKSQQGTALGL 171 + I L FA + W+ I +L GG + + +S + +QG G Sbjct: 285 IADGTGYILLAFATR-----GWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGS 339 Query: 172 NAGLGNLG 179 A L +L Sbjct: 340 LAALTSLT 347
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.4 bits (92), Expect = 2e-05 Identities = 60/350 (17%), Positives = 114/350 (32%), Gaps = 30/350 (8%) Query: 39 ELGLSESQ---FGLMVALPILTGSLVRLPLGLITDRFGGRIVFFIHMLLVAIPIYGLAFA 95 +L S +G+++AL L LG ++DRFG R V + + A+ +A A Sbjct: 34 DLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATA 93 Query: 96 SQYWHYLVLGLFVGLAGGSFAVGIAYTSAWFEKERQGTAMGIFGAGNAGAAITNLVAPMI 155 W + + G+ G + AV AY + + + + G A + V + Sbjct: 94 PFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL 153 Query: 156 VVAFGWRMVPQVYSVAMLVTAVLFWLFTWTDPAHLKGAAEASQRPSLAKQLAPLAELRVW 215 + F P + A+ L F + + + + + V Sbjct: 154 MGGFSPHA-PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVV 212 Query: 216 RFGLYYFFVFG--GFVALALWLPKYYIAEYGLDLKTASFITMLFTLPSGLIRA-LGGWFS 272 + FF+ G V ALW+ + + D T F + L +A + G + Sbjct: 213 AALMAVFFIMQLVGQVPAALWV-IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271 Query: 273 DHYGARS-VNWGVFWVCLVCLFFLSYPQTTMTIHGIQGDLSLGIGLNVWLFTFLVFVVGI 331 G R + G+ + + W+ F + V+ Sbjct: 272 ARLGERRALMLGMIADGTGYILLAFATR-------------------GWMA-FPIMVLLA 311 Query: 332 AQGFGKASVYRIIHDYYPSN-MGTVGGMVGVIGGLGGFCLPILFGYAADH 380 + G G ++ ++ G + G + + L P+LF Sbjct: 312 SGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 2e-06 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 12/111 (10%) Query: 495 FGERGEVTIELDNRLQHVPLSPNEEIHVLQIVREALSNVVRHSQAQR---AWVRLSSQAD 551 F +R + +++ + V + P ++Q + E N ++H AQ + L D Sbjct: 236 FEDRLQFENQINPAIMDVQVPP----MLVQTLVE---NGIKHGIAQLPQGGKILLKGTKD 288 Query: 552 -GQVSIAVEDDGVGFDPQQNRSGHYGLTIMQERGQTL-GSQLRFEARAPHG 600 G V++ VE+ G S GL ++ER Q L G++ + + G Sbjct: 289 NGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG 339
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 2e-12 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Query: 957 RLQVLVVDDHAVNRQILHQQLSFLGHDVEEAENGLSALNLWHGQPFDMVITDCHMPLMSG 1016 +LV DD A R +L+Q LS G+DV N + D+V+TD MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 1017 SDLARSIRQEERENGEEPVVIIGLTADAQPEEIERCIQAGMNECLIKPIGLD 1068 DL I+ + + PV+++ +A + + G + L KP L Sbjct: 63 FDLLPRIK---KARPDLPVLVM--SAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.9 bits (127), Expect = 1e-09 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 9/140 (6%) Query: 1 MNDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMS 60 M +LV +D+ R V AL + + ++ + + G D+ + D+ M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRA-GYDVRITSNAATLWRWIAA-GDGDLVVTDVVMP 58 Query: 61 GMDGLAFLRHASLSGKVHSVILSSEVDPILRQATI-SMIECLGLNFLGDLGKPFSLERIT 119 + L + V++ S Q T + I+ L KPF L + Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSA------QNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 120 ALLTRYNARRQDLPRQIEVA 139 ++ R A + P ++E Sbjct: 113 GIIGRALAEPKRRPSKLEDD 132
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.8 bits (176), Expect = 6e-17 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 3 TVLIVDDHPVIRLAVRVLLEKHGLQVVAETDNGVDAIQLVREHEPDVVILDIGIPKLDGL 62 T+L+ DD IR + L + G V T N + + + D+V+ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 TVISRIKSLELRSQVLVLTSQSAEAFCKRCIQVGARGFVNKEEDLNNLINA 113 ++ RIK VLV+++Q+ + + GA ++ K DL LI Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.8 bits (64), Expect = 0.039 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 352 EVELLAAIETLIGQTLQRREEPDFAPEHRVPQTA----PGGVVLKKPKKPKKPKAAESAG 407 V ++ + Q +Q EP PE VV++KPK KPK Sbjct: 46 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 105 Query: 408 ---------KPGKIHLGSWFDSSAP---TVKAVRKAPGFGAGAA 439 KP + S F+++AP T A + Sbjct: 106 VQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSV 149
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 45.8 bits (108), Expect = 2e-08 Identities = 47/198 (23%), Positives = 68/198 (34%), Gaps = 33/198 (16%) Query: 11 SQVALLIVDLQRGMQRHDLPPRNNPGAE--ARIVELLAAWRAAGWPVVHVRHVSRQPGSP 68 ++ LLI D+Q +P E A I +L G PVV+ + QPGS Sbjct: 29 NRAVLLIHDMQNYFVDA-FTAGASPVTELSANIRKLKNQCVQLGIPVVY----TAQPGSQ 83 Query: 69 -----------FAPGQPG----VEFQPALAPRDDEAVFEKNVPDAFINSGLQRWLHVRDI 113 + PG + LAP DD+ V K AF + L + Sbjct: 84 NPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGR 143 Query: 114 RQVALVGVATENSVEASARSAGNLGFQTWVVADACFTFAKPDFHGTPRSADEVHAMALAN 173 Q+ + G+ +A A + + V DA F+ H MAL Sbjct: 144 DQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEK-----------HQMALEY 192 Query: 174 LHGEYAVVLRAAELLQRL 191 G A + LL +L Sbjct: 193 AAGRCAFTVMTDSLLDQL 210
>SECA#SecA protein signature. Length = 901 Score = 41.0 bits (96), Expect = 1e-06 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Query: 162 GRGDQACPCGSGKRYRNCCSRL 183 GR D CPCGSGK+Y+ C RL Sbjct: 880 GRND-PCPCGSGKKYKQCHGRL 900
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 31.6 bits (71), Expect = 0.007 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 19/124 (15%) Query: 130 QDIPYPYVVEQGDELAGSGVTAAELARVFPSTDLSAASDDIADGLYEWERADQLPLALFD 189 Q++ + Y E+ EL V+ ++ + + +R + L D Sbjct: 149 QNLVFVYRGEKISELEQENVSWTDVIKAI---------------VKHKDRFNDNRLVFID 193 Query: 190 AARVDFSLRRLVHYTGSDWRHVQPWILLTNYHRYV-DQFIRLGLTRLREDPRFVRMVLPG 248 AR FSL +V+ T ++ V P Y V + F RLGLT+ D FV Sbjct: 194 DARTIFSLANIVN-TNNNSADVNPKEDGIGYFTNVYESFQRLGLTKSNLDSIFVNS--DS 250 Query: 249 NVII 252 N++I Sbjct: 251 NIVI 254
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 1e-13 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 8/170 (4%) Query: 11 QRDSALRERILQLGLRRVAEGGFAALTMQALADDAGIATGSLYRHFRGKGELAAEIFRRA 70 Q R+ IL + LR ++ G ++ ++ +A AG+ G++Y HF+ K +L +EI+ + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 71 SQREVDALAVVL-RGPGAPAWRLAEGLRRF--AARAWSSQRLAFALI-----AEPVDPEV 122 + + PG P L E L + +RL +I V Sbjct: 67 ESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 123 DEQRLRYREAYAALFVELLEEGRRSGAFQLSLVPLAAACLVGAIAEALVG 172 + + + L+ + L+ AA ++ L+ Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 2e-15 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 2/114 (1%) Query: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728 T+LV +D+A + V L + GY VR N + +A D V+ D MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLH 782 I+ +LPVL ++A + + G DY+ KP EL ++ Sbjct: 65 LLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 45.9 bits (109), Expect = 4e-07 Identities = 70/340 (20%), Positives = 123/340 (36%), Gaps = 72/340 (21%) Query: 621 ILLTGASGLMGAHLLAELLASREADLHCPVRAQNDAH--ALERLRQAARQHRIELAESDW 678 L+TGA+G +G H+ LL + ND + +L++ R LA+ + Sbjct: 3 YLVTGAAGFIGFHVSKRLL--EAGHQVVGIDNLNDYYDVSLKQARLEL------LAQPGF 54 Query: 679 RRVRAYAADLAEPGFGLPAETYRELAGSVDQVFHSA--SAVNF-IQ-PYSYMKRDNVEGL 734 + + AD + + G ++VF S AV + ++ P++Y N+ G Sbjct: 55 QFHKIDLADRE-----GMTDLFAS--GHFERVFISPHRLAVRYSLENPHAYADS-NLTGF 106 Query: 735 GQVLRFCASGRCKPLMLLSSISVYSWGHLHTGKRLMREDDDIDQNLPAVVTDMGYVRSKW 794 +L C + + L+ SS SVY K DD +D P + Y +K Sbjct: 107 LNILEGCRHNKIQHLLYASSSSVYGLNR----KMPFSTDDSVDH--PVSL----YAATKK 156 Query: 795 VMEKIADLAAE-RGLPLMTFRLGYATCHSRTGAHADYQWWSR-------LARTCLEYRAV 846 E +A + GLP R + T Y W R + LE +++ Sbjct: 157 ANELMAHTYSHLYGLPATGLR--FFTV---------YGPWGRPDMALFKFTKAMLEGKSI 205 Query: 847 PLLR--ELREGLTTVDYMVEAISVIARQP-----------------SALGKKFNLVPSIP 887 + +++ T +D + EAI + A + +N+ S P Sbjct: 206 DVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSP 265 Query: 888 RCLT--LDEFFDRLGRRAGRPLRQMPFDDWVSLWEDNRDA 925 L + D LG A + + + D + D + Sbjct: 266 VELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKAL 305
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 63.9 bits (155), Expect = 2e-14 Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 9/190 (4%) Query: 3 NVLIVGASRGIGLGLADAFLQRGAQVFAVARRPQGSPGLQALAERAGERLQAVTGDLNQR 62 I GA++GIG +A +GA + AV P+ + + + +A D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 63 DCAERIGEALGER--RIDRLIVNAGIYGPQQQDVAEIDAEQTAQLFLTNAIAPLRLARAL 120 + I + ID L+ AG+ P + E+ F N+ +R++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIH--SLSDEEWEATFSVNSTGVFNASRSV 127 Query: 121 SG--RVSRGGVVAFMSSQMASLALGLSATMPLYGASKAALNSLVRSWEGEFEELPFSLLL 178 S R G + + S A + +M Y +SKAA + E E + Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVP---RTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 179 LHPGWVRTEM 188 + PG T+M Sbjct: 185 VSPGSTETDM 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.4 bits (136), Expect = 1e-11 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 5 RIRVMVADDHPAISLGISYELSQCGSLEMLGQVSNSTELIGRLNEGDCDVVIVDYTMPGG 64 ++VADD AI ++ LS+ G + SN+ L + GD D+V+ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 65 KYGDGLALLSLLRRRYPHLQLVVFTMLNNPGLIRAILKQGINCILSKSDSTSHLLAAVSA 124 + LL +++ P L ++V + N ++G L K + L+ + Sbjct: 61 ---NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 125 AYSRNQ 130 A + + Sbjct: 118 ALAEPK 123
>PF05860#haemagglutination activity domain. Length = 117 Score = 79.5 bits (196), Expect = 8e-20 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 9/108 (8%) Query: 54 LPSGGTVVGGSANGEIHLSGGNSLSVNQKVDKLIANWDSFSVAAGERVIFNQPSSSSIAL 113 LP + I Q L ++ FSV FN P++ + Sbjct: 9 LPINSNITTEGNTRII-------ERGTQAGSNLFHSFQEFSVPTSGTAFFNNPTNIQNII 61 Query: 114 NRVIGTKASDIQGRIDANG--QVFLVNPNGVLFGRGAQVNVGGLVAST 159 +RV G S+I G I AN +FL+NPNG++FG+ A++++GG + Sbjct: 62 SRVTGGSVSNIDGLIRANATANLFLINPNGIIFGQNARLDIGGSFVGS 109
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 741 bits (1914), Expect = 0.0 Identities = 268/868 (30%), Positives = 412/868 (47%), Gaps = 55/868 (6%) Query: 1 MAVASPAGGLDAPSRRIVFDAQMLALGPGGRSIDTSRFERGDVIEPGRYRLDLLLNSRWR 60 + A S + F+ + LA D SRFE G + PG YR+D+ LN+ + Sbjct: 31 FVACAFAAQAPLSSAELYFNPRFLA-DDPQAVADLSRFENGQELPPGTYRVDIYLNNGYM 89 Query: 61 GVEEVELRRQPGRESAVFCYDRGLLERAGIDLEKSARGQDRSSARDPLPEGLHCDPLERY 120 +V + V C R L G++ S + L C PL Sbjct: 90 ATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTA--------SVSGMNLLADDACVPLTSM 141 Query: 121 VPGARVKLDIAEQSIYVSVPSYYLSLDSSKTYVDPASWDSGISAALLNYNSNL-HVRENH 179 + A +LD+ +Q + +++P ++S + ++ Y+ P WD GI+A LLNYN + V+ Sbjct: 142 IHDATAQLDVGQQRLNLTIPQAFMS-NRARGYIPPELWDPGINAGLLNYNFSGNSVQNRI 200 Query: 180 GRSATSGYAGMNAGFNFGRARLRHNGTATWSRRMGS-----HYQRSATYVQTDLPAWRAQ 234 G ++ Y + +G N G RLR N T +++ S +Q T+++ D+ R++ Sbjct: 201 GGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSR 260 Query: 235 LLLGENSTSSEFFDAVSFRGVQLSSDDRMLPDSLRYYAPVVRGTASTNARVSVYQRGYLI 294 L LG+ T + FD ++FRG QL+SDD MLPDS R +APV+ G A A+V++ Q GY I Sbjct: 261 LTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDI 320 Query: 295 YETTVAPGAFALDELQTASYGGDLEVRVTEASGEVRSFIVPFATTVQLLRPGTTRYSLTA 354 Y +TV PG F ++++ A GDL+V + EA G + F VP+++ L R G TRYS+TA Sbjct: 321 YNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITA 380 Query: 355 GRL-NDPSLERRPNMLQGVYQRGLGNDVTAYAGGAFTGSYMSGLMGAALNT-PVGGFSGD 412 G + + + +P Q GL T Y G Y + G N +G S D Sbjct: 381 GEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVD 440 Query: 413 VTLARTEVPGDDRLSGSSYRLAYSKNLPNTGTNFSLLAYRYSTGGYLGLRDAAFMQDRVE 472 +T A + +P D + G S R Y+K+L +GTN L+ YRYST GY D + + Sbjct: 441 MTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGY 500 Query: 473 RGEPLE--------------SFSRLRNRLDANISQQLGNGGNLYLNGSSQRYWSGGGRAV 518 E + R +L ++QQLG LYL+GS Q YW Sbjct: 501 NIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDE 560 Query: 519 NFSVGYSNQWRDVSYSISAQRLRSHYEGFSSGDKRGETSTLFSLNLSIPLGG-------A 571 F G + + D+++++S ++ + + + +LN++IP + Sbjct: 561 QFQAGLNTAFEDINWTLSYSLTKNAW--------QKGRDQMLALNVNIPFSHWLRSDSKS 612 Query: 572 GRGSPTLSSYLTRDSNSGTQLTSGVSGMLGKRGEASYSLSASHDRDSRQTSKS---ASLD 628 + S ++ D N +GV G L + SYS+ + S S A+L+ Sbjct: 613 QWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLN 672 Query: 629 YRLPQVELGSSLSQGPGYRQLSVKAAGGLVAHSGGITAAQTLGETIGLVHAPNARGAA-A 687 YR S +QL +GG++AH+ G+T Q L +T+ LV AP A+ A Sbjct: 673 YRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVE 732 Query: 688 GYSGSRIDRHGYAVIPNLLPYQLNSVDLDPNGMADEIELRSSSRNVAPTAGAVVRLDYPT 747 +G R D GYAV+P Y+ N V LD N +AD ++L ++ NV PT GA+VR ++ Sbjct: 733 NQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKA 792 Query: 748 RVARPLLVDSRMPSGEPLPFAAEVLDAHSGQSVGAVGQGSRLVLRVEQDRGSVRVRWGNE 807 RV LL+ + +PLPF A V S QS G V ++ L G V+V+WG E Sbjct: 793 RVGIKLLMTLT-HNNKPLPFGAMVTSE-SSQSSGIVADNGQVYLSGMPLAGKVQVKWGEE 850 Query: 808 PQQQCLVDYALGPRETTPPVLQLA--CR 833 C+ +Y L P + QL+ CR Sbjct: 851 ENAHCVANYQLPPESQQQLLTQLSAECR 878
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 65 AGRQVQVAAEAAGRITRIAFESGQQVQQGQLLVQLNDAVEQAELIRLKAQLRNAEILHAR 124 +GR ++ + I + G+ V++G +L++L +A+ ++ ++ L A + + Sbjct: 93 SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARL--EQ 150 Query: 125 ARKLVERNVASQEQLDNAVAARDMALGAVRQTQALIDQKAIRAPFS 170 R + +L + V + + L I+ FS Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS 196 Score = 40.2 bits (94), Expect = 9e-06 Identities = 25/134 (18%), Positives = 60/134 (44%), Gaps = 6/134 (4%) Query: 102 AVEQAELIRLKAQLRNAEILHARARKLVERNVASQ-EQLDNAVAARDMALGAVRQTQALI 160 V +++L ++++++ +A+ + +L + + + Q + + + L + Q Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQAS 328 Query: 161 DQKAIRAPFSGQLGIRRVH-LGQYLGVAEPVASLV-DARTLKSNFSLDESTSPELKLGQP 218 IRAP S ++ +VH G + AE + +V + TL+ + + +GQ Sbjct: 329 V---IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQN 385 Query: 219 LEVLVDAYPGRSFP 232 + V+A+P + Sbjct: 386 AIIKVEAFPYTRYG 399
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 802 bits (2072), Expect = 0.0 Identities = 316/1029 (30%), Positives = 530/1029 (51%), Gaps = 29/1029 (2%) Query: 5 DLFVRRPVLALVVSTLILLLGLFSLGKLPIRQYPLLESSTITVTTEYPGASADLMQGFVT 64 + F+RRP+ A V++ ++++ G ++ +LP+ QYP + ++V+ YPGA A +Q VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 QPIAQAVSSVEGIDYLSSTSVQ-GRSVVTIRMLLNRDSTQAMTETMAKVNSVRYKLPERA 123 Q I Q ++ ++ + Y+SSTS G +T+ D A + K+ LP+ Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 YDSVIERSSGETTAVAYVGFSS--KTLPIPALTDYLSRVVEPMFSSIDGVAKVQTFGGQR 181 I ++ + GF S ++DY++ V+ S ++GV VQ FG Q Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 182 LAMRLWLDADRLAGRGLTASDVAEAIRRNNYQAAPG------MVKGQYVLSNVRVNTDLT 235 AMR+WLDAD L LT DV ++ N Q A G + GQ + +++ T Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 NVDDFREMVIRNDGNG-LVRLRDVGTVELGAAATETSALMDGDPAVHLGLFPTPTGNPLV 294 N ++F ++ +R + +G +VRL+DV VELG A ++G PA LG+ N L Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 IVDGIRKLLPEIQKTLPPDVRVDLAYETSRFIQASIDEVVRTLVEALLIVVLVIYLCLGS 354 I+ L E+Q P ++V Y+T+ F+Q SI EVV+TL EA+++V LV+YL L + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 LRSVLIPVATIPLSMLGAAALMLAFGFSVNLLTLLAMVLAIGLVVDDAIVVVENVHRHIE 414 +R+ LIP +P+ +LG A++ AFG+S+N LT+ MVLAIGL+VDDAIVVVENV R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EGKS-PVAAALIGAREVAGPVIAMTITLAAVYTPIGLMGGLTGALFREFALTLAGAVIVS 473 E K P A ++ G ++ + + L+AV+ P+ GG TGA++R+F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GVVALTLSPVMSSLLLQA-----HQNEGRMGRAAEWFFGGLTRRYGQVLEFSLGHRWLTG 528 +VAL L+P + + LL+ H+N+G F Y + LG Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 GLALLVCISLPLLYSMPKRELAPTEDQAAVLTAIKAPQHANLDYVELFARKLDQVYTSIP 588 + L+ + +L+ P EDQ LT I+ P A + + ++ Y Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 589 E------TVSTWIINGTDGPAASFGGINLAAWEKRERD---ASAIQSELQGKVGDVEGSS 639 + A ++L WE+R D A A+ + ++G + Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 640 IFAFQLAA--LPGSTGGLPVQMVLRSPQDYPVLYRTMEEIKQKARQSGLFVV-VDSDLDY 696 + F + A G+ G +++ ++ + L + ++ A Q +V V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 697 NNPVVQVRIDRAKANSLGIRMQDIGESLAVLVGENYVNRFGMEGRSYDVIPQSLRDQRFT 756 + ++ +D+ KA +LG+ + DI ++++ +G YVN F GR + Q+ R Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 757 PQALARQFVRTQDGNLVPLSTVVRVALQVEPNKLIQFDQQNAATLQAIPAPGVSMGQAVA 816 P+ + + +VR+ +G +VP S +L +++ + +Q APG S G A+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 817 FLDDVARGLPAGFSHDWQSDSRQYTQEGNTLVFAFLAALVVIYLVLAAQYESLADPLIIL 876 ++++A LPAG +DW S Q GN + VV++L LAA YES + P+ ++ Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 877 ITVPLSICGALLPLALGYATMNIYTQIGLVTLIGLISKHGILMVEFANELQLHERLDRRA 936 + VPL I G LL L ++Y +GL+T IGL +K+ IL+VEFA +L E Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 937 AILRAAQIRLRPVLMTTAAMVFGLVPLLFASGAGAASRFGLGVVIVSGMLVGTLFTLFVL 996 A L A ++RLRP+LMT+ A + G++PL ++GAG+ ++ +G+ ++ GM+ TL +F + Sbjct: 962 ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFV 1021 Query: 997 PTVYTLLAR 1005 P + ++ R Sbjct: 1022 PVFFVVIRR 1030 Score = 92.6 bits (230), Expect = 4e-21 Identities = 69/327 (21%), Positives = 135/327 (41%), Gaps = 13/327 (3%) Query: 701 VQVRIDRAKANSLGIRMQDIGESLAV----LVGENYVNRFGMEGRSYDVIPQSLRDQRFT 756 +++ +D N + D+ L V + + G+ + + + + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA-QTRFKN 242 Query: 757 PQALARQFVRT-QDGNLVPLSTVVRVALQVEP-NKLIQFDQQNAATLQAIPAPGVSMGQA 814 P+ + +R DG++V L V RV L E N + + + + AA L A G + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 815 V----AFLDDVARGLPAGFSHDWQSDSRQYTQEG-NTLVFAFLAALVVIYLVLAAQYESL 869 A L ++ P G + D+ + Q + +V A+++++LV+ +++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 870 ADPLIILITVPLSICGALLPLALGYATMNIYTQIGLVTLIGLISKHGILMVEFANELQLH 929 LI I VP+ + G LA ++N T G+V IGL+ I++VE + + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 930 ERLDRRAAILRAAQIRLRPVLMTTAAMVFGLVPLLFASGAGAASRFGLGVVIVSGMLVGT 989 ++L + A ++ ++ + +P+ F G+ A + IVS M + Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 990 LFTLFVLPTV-YTLLARNHAEVDKSPR 1015 L L + P + TLL AE ++ Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKG 509
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.032 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 4/120 (3%) Query: 334 LGSASRAFEL--APSVSWPAF-RLGNVRARLRAVEAQ-SDAALARYQRSLLLAQEDVGNA 389 SR+ EL P + P NV + +Q + ++ Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKK 212 Query: 390 LNQLAEHQRRLVALFQSATHGANALEIANERYRAGAGSYLAVLENQRALYQIREELAQAE 449 + R+ + + L+ + A + AVLE + + EL + Sbjct: 213 RAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYK 272
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 0.001 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 20/88 (22%) Query: 40 LTLLGPSGSGKTTSLMMLAGFETPTAGEILLAGRSINNVPPHKRDIGMVFQNYALFPHMT 99 + L G G GK+T + L G + + + +D Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVA---YE 646 Query: 100 VAENLAFPLSVRGMSKTDVKERVKRALS 127 ++E + + D E VK S Sbjct: 647 LSE-------MTAFRRADA-EAVKAFFS 666
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 28.7 bits (64), Expect = 0.028 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 135 KVAGSPQGWADFWDVKKFPGKRGLRWGAKYSLEFALMADGV-----APK------DVYQT 183 K+ G +++ KK + +RW +Y++ V PK +V QT Sbjct: 80 KMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQT 139 Query: 184 L 184 L Sbjct: 140 L 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.7 bits (155), Expect = 4e-14 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 2/116 (1%) Query: 3 IRVLVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEQLLETLRGTPCEVVLLDISMPGVN 62 +LVA+D +R + Q + A V +N L + ++V+ D+ MP N Sbjct: 4 ATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLEAIPRIRALNEPPAILVLSMHDEAQMAARALKIGAAGYATKDSDPALLLTAIRR 118 + +PRI+ +LV+S + A +A + GA Y K D L+ I R Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.9 bits (64), Expect = 0.031 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 17/124 (13%) Query: 120 AGWQTLSLALPDPQSTAPVTRPAESAASASADKDA---------------SAADSASKPD 164 A W T L + A AE+ A A A++DA +A+ + S + Sbjct: 55 AKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQRLKDIVNEALRHNASRTPSATE 114 Query: 165 VKGESGNA--PAPESTAEAGSGEPAQSEDQAPPPAIDPVEQRKAHAERVMARLQASIDLA 222 + + A E A + E A+ E +A A EQR+ ER A + + LA Sbjct: 115 LAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLA 174 Query: 223 LQHE 226 E Sbjct: 175 EAEE 178
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.4 bits (201), Expect = 5e-20 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 1/134 (0%) Query: 2 PHILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGLPDISGF 61 IL+ +D+AAI L AL G+ + A DL++ DV +PD + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EACKRLR-RFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMA 120 + R++ ++PV+ ++A++ + + E GA DY+ KPF E+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 PRPAALEGAAPSGP 134 RP+ LE + G Sbjct: 124 RRPSKLEDDSQDGM 137
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 27.6 bits (61), Expect = 0.027 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Query: 1 MKRALALLSLFALPVLA-AEPNLYG 24 MK++L L+L ALPV A A+ LYG Sbjct: 1 MKKSLIALTLAALPVAAMADVTLYG 25
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.1 bits (117), Expect = 7e-08 Identities = 66/351 (18%), Positives = 117/351 (33%), Gaps = 48/351 (13%) Query: 576 TAEEREKLLQMEERLHQRVIG---QQEAITAVSDAVRLARAGLRQGSRPIATFLFLGPTG 632 + L +R ++ + S A++ L + + T + G +G Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 633 VGKTELAKALAEVVFGDEDAMIRIDMSEYMERHAVSRLIGAPPGYVGYDEGGQLTERVRR 692 GK +A+AL + + I+M+ S L G E G T R Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTR 222 Query: 693 RPYSV-------ILLDEIEKAHADVNNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLG 745 + LDEI D LL+V G T GR ++ I+A +N Sbjct: 223 STGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN-- 280 Query: 746 SELIMKNAQAGEFAQPPEKLKRELMTTLRGHFRPEFLNRLDEVIVFESLSKAQIEDIVRL 805 + ++ + G FR + RL+ V + + + EDI L Sbjct: 281 --------------KDLKQSINQ------GLFREDLYYRLNVVPLRLPPLRDRAEDIPDL 320 Query: 806 QLERVKRAAHAQDIYLHIDDSLVGHLAEEAYQPEFGARELKRQIRQQLETRLATAMLKGE 865 V++A D + + +A+ REL+ +R+ TA+ + Sbjct: 321 VRHFVQQAEKEGLDVKRFDQEALELM--KAHPWPGNVRELENLVRR------LTALYPQD 372 Query: 866 VKEGETVTFFYDAKDGVGYRKGAAPKPAARKKSGAGETPKGRATAARKPAA 916 V E + ++ + AA + + S A E + A+ A Sbjct: 373 VITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDAL 423
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 120 bits (302), Expect = 9e-32 Identities = 91/416 (21%), Positives = 177/416 (42%), Gaps = 17/416 (4%) Query: 6 QLTPRIARQLPWLVAVAFFMQALDGTILNTALPSMASSLNENPLRMQAVVIAYLLTVALL 65 Q R + L WL ++FF L+ +LN +LP +A+ N+ P V A++LT ++ Sbjct: 7 QSNLRHNQILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIG 65 Query: 66 IPASGWIADRFGTRRVFLGAVLLFSLGSLLCALSPS-LELLVGARIVQGVGGALMMPVGR 124 G ++D+ G +R+ L +++ GS++ + S LL+ AR +QG G A + Sbjct: 66 TAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVM 125 Query: 125 LVILRVYPRQDLVRVLSFVTIPGLLGPLAGPTLGGWLVEYASWHWIFLINLP-VGLLGCL 183 +V+ R P+++ + + +G GP +GG + Y HW +L+ +P + ++ Sbjct: 126 VVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIPMITIITVP 183 Query: 184 VAMKLMPDLRSPVPSRFDSIGFLLFGGSMVLISIALEGLGELHLSHLRVVLLLIGGLVLL 243 MKL+ + FD G +L +V + L + V+ LI Sbjct: 184 FLMKLLKKEVR-IKGHFDIKGIILMSVGIVFFMLFTTSYSISFLI-VSVLSFLI------ 235 Query: 244 TAYWLRALRIDKPLFPPSLFKARTFAVGILGNLFARLGSGALPFLTPLLLQVGLGYPPST 303 + ++ P P L K F +G+L + P +++ + Sbjct: 236 --FVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAE 293 Query: 304 AG-MTMIPLALFAMVAKPMAKPLLDFFGYRKLLVGNTLILGCLIAGFGLVDQDTPYVWLL 362 G + + P + ++ + L+D G +L L + + T + + Sbjct: 294 IGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTI 353 Query: 363 LHLSLLGAVNSLQFTAMNTLTLIDLQDSNASSGNSLMSVVVQLSISLGVACAAALL 418 + + +LG ++ + T ++T+ L+ A +G SL++ LS G+A LL Sbjct: 354 IIVFVLGGLSFTK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>SECA#SecA protein signature. Length = 901 Score = 37.9 bits (88), Expect = 1e-04 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%) Query: 212 IEVTPPNTTVERIEQ--RVFRLPAPQKRALLAHLVTVGAWEQ-VLVFTRTKHGANRLAEY 268 V P N + R + V+ A + +A++ + A Q VLV T + + ++ Sbjct: 409 TVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNE 468 Query: 269 LTKHGLPAAAIHG-NKSQNARTKALADFKANDVRILVATDIAARGLDI 315 LTK G+ ++ + A A A + A + +AT++A RG DI Sbjct: 469 LTKAGIKHNVLNAKFHANEAAIVAQAGYPAA---VTIATNMAGRGTDI 513
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1353 bits (3503), Expect = 0.0 Identities = 692/1034 (66%), Positives = 838/1034 (81%), Gaps = 3/1034 (0%) Query: 1 MSKFFIDRPIFAWVIALVIMLAGGLSILSLPVNQYPAIAPPAIAVQVSYPGASAETVQDT 60 M+ FFI RPIFAWV+A+++M+AG L+IL LPV QYP IAPPA++V +YPGA A+TVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQLATPLLPQ 120 V QVIEQ MNGIDNL Y+SS S+S GS+TIT+TF+ GTDPDIAQVQVQNKLQLATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVGDFQVFGS 180 EVQ+QGI V K+ ++LMV G VS + T++D+S+Y+ SN++D LSR GVGD Q+FG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYSMRIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNATIIGKTRL 240 QY+MRIWLD LN Y+LTP DV + ++ QN QI++GQLGG PA+ GQQLNA+II +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANAL 300 + E+F + L+VN DGS VRLKDVA V LGG++Y++ A+ NG PA+G+ IKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQ 360 DTAKAI+ +A L+PF PQGMKV+YPYDTTP V SIHEVVKTL EAI+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 N RATLIPTIAVPVVLLGTF +LAAFG+SINTLTMFGMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMAL 480 E+ L P+EA KSM QIQGALVGIAMVLSAVF+PMAFFGGSTG IYRQFSITIVSAMAL Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMFLSTTHGYERGVASILKHRAP 540 SV+VALILTPALCAT+LKP+ H E+KGGFFGWFN F + + Y V IL Sbjct: 481 SVLVALILTPALCATLLKPVSAE-HHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 YLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLE 600 YLLIY +IVAGM+ +F R+P++FLP+EDQGV +Q P G++ ERTQ V+D + +Y L+ Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 KESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPGGENSVFELAKRAQMHFFSFKD 660 E ++V SVFTV GF+F+G+ Q++GMAF+ LKPWEER G ENS + RA+M +D Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 661 AMVFAFAPPSVLELGNATGFDLFLQDQAGVGHEVLLQARNKFLMLAAQNPA-LQRVRPNG 719 V F P+++ELG ATGFD L DQAG+GH+ L QARN+ L +AAQ+PA L VRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 720 MSDEPQYKLEIDDEKASALGVSLADINSTVSIAWGSSYVNDFIDRGRVKRVYLQGRPDAR 779 + D Q+KLE+D EKA ALGVSL+DIN T+S A G +YVNDFIDRGRVK++Y+Q R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 780 MNPDDLSKWYVRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDA 839 M P+D+ K YVR+ GEMVPF+AF T W YGSP+LERYNG+P+MEI GE APG SSGDA Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MAAVEEIVKQLPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPFS 899 MA +E + +LP G+GY WTG+SY+ERLSG+QAPAL A+S +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VMLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKELHE-QGKGI 958 VMLVVPLG++G LLA ++ NDV+F VGLLTTIGLSAKNAILIVEFAK+L E +GKG+ Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 959 VEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018 VEA + A RMRLRPI+MTSLAFILGV+PLAIS GAGSG+Q+A+G GV+GGMV+AT+LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1019 WVPLFYVAVSTLFK 1032 +VP+F+V + FK Sbjct: 1020 FVPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 8e-08 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 62 RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYK 121 R E++P N I+ + + KEG V+ G L ++ EAD Q++L + + RY+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 122 LLVADQAVSKQQYADANA-AYLQSKAAVEQARI 153 +L ++K Y Q+ + E R+ Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Score = 42.9 bits (101), Expect = 1e-06 Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 37/268 (13%) Query: 37 EVGIVTLEAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 96 E+ + A+ +T+ + N R+ + R L + + K + Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLD----DFSSLLHKQAIAKHAVLEQENKY 261 Query: 97 ATYEADYQSAQANLASTQEQAQRYK--LLVADQAVSKQ---QYADANAAYLQSKAAVEQA 151 + + ++ L + + K + Q + + + + Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN 321 Query: 152 RINLRYTKVLSPISGRIGRSAV-TEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRL 210 + + + +P+S ++ + V TEG +VT + M V + D + V + + + Sbjct: 322 EERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFI 380 Query: 211 RRELASGQLERAGDNAAKVSLKLE--DGSQYP-LEGRLE--FSEVSVDEGTGSVT--IRA 263 GQ +K+E ++Y L G+++ + D+ G V I + Sbjct: 381 N----VGQ---------NAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIIS 427 Query: 264 V------FPNPNNELLPGMFVHAQLQEG 285 + N N L GM V A+++ G Sbjct: 428 IEENCLSTGNKNIPLSSGMAVTAEIKTG 455
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 30.5 bits (68), Expect = 0.016 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 6/128 (4%) Query: 171 NLSPTAR----LLVNQRIRSRYDEPSRLSLLYLAQQGRAYRGVDDRDLRAARLPGGSQVL 226 N+ P AR + V ++S D + L+ ++ R Y + D+ + G L Sbjct: 32 NIRPVARQVEGMFVQMMLKSMRDALPK-DGLFSSEHTRLYTSMYDQQIAQQMTAGKGLGL 90 Query: 227 AEAFVKQIKTIKTKSKVSSIVQAKDGVAVKAGSETYKADYVVLAVPLKALGQIQMTPSLS 286 AE VKQ+ + + S+ A ++ L P S Sbjct: 91 AEMMVKQMTPEQPLPEEST-PAAPMKFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDS 149 Query: 287 GTQMSALK 294 ++ L Sbjct: 150 KAFLAQLS 157
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.013 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Query: 7 PRVAVIADTSLQRHVLQQALLGHGYEVVLNADPARVDDAALECAPDLWLVDLTQQDDS-- 64 + V D + R VL QAL GY+V + ++ A + DL + D+ D++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 PLLDSLLEQD-RAPVLFGEGHA 85 LL + + PVL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQN 85
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 2e-13 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 2351 VMVVDDSVTVRKVTTRLLERNGMNVLTAKDGVDAIAQLQEHRPDILLLDIEMPRMDGFEV 2410 ++V DD +R V + L R G +V + + D+++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 2411 ATLVRHDERLGNLPIIMITSRTGEKHRERALGIGVNQYLGKPYQETELLEAIQ 2463 ++ + +LP+++++++ +A G YL KP+ TEL+ I Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 8e-21 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 2 ARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGF 61 A IL+ DD L L + G+ V N D+V+ D+VMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLA 120 ++ K +PV++++ ++ + +GA DYL KP D L+ I LA Sbjct: 64 DLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 3e-18 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 6 DGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLD 65 G ++V DD IR L + G DV + IA +++ D++MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GYQTCALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIK 122 + IK A PV+++S+++ K G+ YL KPF EL+G I Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 63.1 bits (153), Expect = 1e-13 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 14/183 (7%) Query: 95 APFQDNQVKKVAPPAT--------PKQARSEEAPKAAVTTTRQRQQKAPSKTQAQKAEQV 146 AP Q V VAP P + E P+ ++ + K + Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 104 Query: 147 AKPAPHFDSTQLSAEIASLEADLAKEQQAYAKRPRIHRLSAASTMRDKGAWYKEDWRKKI 206 KP Q ++ + P S A+ K + + Sbjct: 105 PKPVK--KVEQPKRDVKP--VESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRAL 160 Query: 207 ERIGNLNYPDEARRQKLYGSLRLLVSINRDGTIYEVQVLESSGEPILDQAAQRIVRLAAP 266 R YP A+ ++ G +++ + DG + VQ+L + + ++ + +R Sbjct: 161 SRN-QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR-RWR 218 Query: 267 YAP 269 Y P Sbjct: 219 YEP 221
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 28.6 bits (64), Expect = 0.032 Identities = 10/41 (24%), Positives = 17/41 (41%) Query: 293 ADGAQSVILNQVTYGIAIRMAVLSMAMSGQNTQRQLEQEDA 333 A G Q + N G+A+ +++ M + E ED Sbjct: 40 ALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVYFEDEDV 80
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 46.1 bits (109), Expect = 8e-08 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 11/95 (11%) Query: 59 SLTEQPGRQQP-----SAAEPAEPPAPVAEAPLAGDEPASAAEHSPRPEAPVAQPEPILA 113 + E P QP EPP V P E P PE P+ Sbjct: 34 QVIELPAPAQPISVTMVTPADLEPPQAVQP------PPEPVVEPEPEPEPIPEPPKEAPV 87 Query: 114 AEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPG 148 +P+P+P+P+P+P V +RP Sbjct: 88 VIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPA 122 Score = 34.2 bits (78), Expect = 6e-04 Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 16/123 (13%) Query: 28 QAGEQPA-DQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAPVAEAPL 86 Q E PA QP+ T A + A EP P P+ E P Sbjct: 34 QVIELPAPAQPISVTMVTPADLEPPQA----------VQPPPEPVVEPEPEPEPIPEPP- 82 Query: 87 AGDEPASAAEHSPRPE-APVAQPEPILAAEPEPEPEPEPEPEPEPVAPLAAAPAVSEPAT 145 + A P+P+ P +P + +P+ + +P P A A S AT Sbjct: 83 ---KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTAT 139 Query: 146 RPG 148 Sbjct: 140 AAT 142
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 33.6 bits (77), Expect = 0.002 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 16/109 (14%) Query: 228 PTISREQLQAFHKKAYAAGN--VVIALVGDLS--RQEAEAIAAEVSKALPQGPALAKTVQ 283 I R QL+A +A GN V+ ++ L RQ + E K L +G ++ +++ Sbjct: 368 QDIFRTQLRAL-LRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIE 426 Query: 284 P----ETPKPGLT------HIDFPSEQTH-LMLAQLGIDRQDPDYAALY 321 E P + +DF S T+ L+ + DR + + LY Sbjct: 427 VGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLY 475
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 29.0 bits (65), Expect = 0.024 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 15/73 (20%) Query: 79 GLQRALLERGWASVALN-----WRGCSGEPNRLPRGYHSGVSDDLAEVVAHLRARRPQAP 133 + L ++GW V + W+ + P+ V+ D ++ +A Sbjct: 69 AVGGILQQQGWPVVGWSSLKYYWK------QKDPKD----VTQDTLAIIDKYQAEFGTQK 118 Query: 134 LYAVGYSLGGNVL 146 + +GYS G V+ Sbjct: 119 VILIGYSFGAEVI 131
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.3 bits (143), Expect = 5e-13 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 11/170 (6%) Query: 7 TRDRIAQASLELFNAQGERSVTTNHIATHLGISPGNLYYHYPNKQAIIAELFAEYESHVE 66 TR I +L LF+ QG S + IA G++ G +Y+H+ +K + +E++ ES++ Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 67 SFLRLPEGRGLTVDDKTF--YLEALLAAMWRYRFLHRDLEHLLESD------PELAARYR 118 + + L +L + +E + + R Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 119 AFAQRCLVNAKAIYRGFTEAGILR-MNETQLEALTLNAWI--ILTSWVRF 165 + + EA +L T+ A+ + +I ++ +W+ Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.2 bits (161), Expect = 2e-15 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 30/214 (14%) Query: 15 KPAGRIRQKNEEAILAAAEEEFARHGFKGTSMNTIAQNVGLPKANLHYYFGNKLGLYTAV 74 + + Q+ + IL A F++ G TS+ IA+ G+ + ++++F +K L++ + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 75 LSNILELWDSTFNTLGVD--DDPAEALARYIRAKMEFSRRYPLASRIFA----------- 121 DP L + +E + + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 122 MEIISGGECLTAHFNQDYRSWFRGRAAVFEAWIAAGRMDP-VDPVHLIFLLWGSTQHYAD 180 M ++ + + + + I A + + ++ G Y Sbjct: 123 MAVVQQAQ---RNLCLESYDRI---EQTLKHCIEAKMLPADLMTRRAAIIMRG----YIS 172 Query: 181 FASQIGLVTGR-KRMSRQDFAAAADNLVRIILKG 213 GL+ D A + V I+L+ Sbjct: 173 -----GLMENWLFAPQSFDLKKEARDYVAILLEM 201
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 45.8 bits (108), Expect = 8e-08 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 14 LLAAGQAVAEDHDMTPTHETDSGPLL---WHNESLTYLYGKNFKINPPIQQTFTLEHAS- 69 LLAAG VA + P W ++S+ + + + P I+ LE+ + Sbjct: 5 LLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEAF 64 Query: 70 -GWTWGDLFIFFDQ-INYNGKEDAS---NGKNTYYGEITPRLSFGKLTGADLSFGPVKDV 124 W D + + D + + G A N + + EI PR S KLT DLSFGP K+ Sbjct: 65 AKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGPFKEW 124 Query: 125 LLAGTYEFGEGDTEA 139 A Y + G ++ Sbjct: 125 YFANNYIYDMGRNDS 139
>PF09025#YopR Core Length = 143 Score = 29.6 bits (66), Expect = 0.016 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 10/90 (11%) Query: 134 LPFEQLL---RPAIELARDGFPVSPVIARLWQSGLDKFRAALPQRPELRAWFDEFLIDGR 190 L FEQ L PA G + RL Q + R EL+A L GR Sbjct: 30 LAFEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGLEADRLELKAMLRAELPLGR 89 Query: 191 APRA------GEVFRQPGQADTLDELARSQ 214 + G V PG + L +LAR + Sbjct: 90 QQQTFLLQLLGAVEHAPG-GEYLAQLARRE 118
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 30.3 bits (68), Expect = 0.009 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 105 TRCRVLEVTPLARELIKSFCELPVDYPEGDSAESRLVQVLLDQLRLLPEVAFSLPMPREP 164 R ++ + +KS + D + +V D L LP+ ++ +P + Sbjct: 138 NNVRAKDLIRVVELFVKSNTSKSSNVLSVDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQ 197 Query: 165 RLLRLCQALIDEPTQS 180 L+ + LI E Q Sbjct: 198 ILI---EGLIFEVQQG 210
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 490 bits (1263), Expect = e-159 Identities = 240/1052 (22%), Positives = 444/1052 (42%), Gaps = 69/1052 (6%) Query: 7 LSDWALRHQSLVWYLMAVSLVMGVFSYLNLGREEDPSFAIKTMVIQTRWPGATVDDTLEQ 66 ++++ +R W L + ++ G + L L + P+ A + + +PGA + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 67 VTDRIEKKLEELDSLDYVKSYT-RPGESTVFVYLKDTTKAGDIPDIWYQVRKKISDIQGE 125 VT IE+ + +D+L Y+ S + G T+ + + T D QV+ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 126 FPQGIQGPG-FNDEFGDVFGSVYAFTADGLDFRQ--LRDYVEKVRLD-IRSVKDLGKVQM 181 PQ +Q G ++ + V F +D Q + DYV D + + +G VQ+ Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 182 IGAQNEV-IYLNFSTRKLAALGLDQRQVVQSLQAQNAVTPSGVVEAGPE------RISVR 234 GAQ + I+L+ L L V+ L+ QN +G + P S+ Sbjct: 178 FGAQYAMRIWLDAD--LLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 235 TSGNFRSEKDLQAVNLRVNDRFY--RLSDLASISRDFVDPPTSLFRYKGEPAIGLAVAMK 292 F++ ++ V LRVN RL D+A + + + R G+PA GL + + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARV-ELGGENYNVIARINGKPAAGLGIKLA 294 Query: 293 EGGNILEFGEALNARMQEITGELPVGVGVHQVSNQAQVVKKAVGGFTRALFEAVVIVLIV 352 G N L+ +A+ A++ E+ P G+ V + V+ ++ + LFEA+++V +V Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 353 SFVSLG-LRAGLVVACSIPLVLAMVFVFMEYTDITMQRVSLGALIIALGLLVDDAMITVE 411 ++ L +RA L+ ++P+VL F + ++ +++ +++A+GLLVDDA++ VE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 412 MMITRLELGDSLHDSATY-AYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVI 470 + + AT + + ++ +V A F+P+ S G I Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 471 AVALLLSWIVAVLFAPVIAVHILPKTLKHKSEQKKG---RIAERFDSLLHLA-------M 520 A+ LS +VA++ P + +L E K G FD ++ + Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 521 RRRWTTIFLTALLFGVSLFLMKFVQHQFFPSSDRPELLVDLNLPQNSSIHETRAVMDR-L 579 + + AL+ + L + F P D+ L + LP ++ T+ V+D+ Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 580 EATLKDDEDID-HWSAYVGEGAIRFYLPLDQQLQNNFYGQLVIVTKDLEAR---ERVAAR 635 + LK+++ G Q QN + K E R E A Sbjct: 595 DYYLKNEKANVESVFTVNGFS-------FSGQAQNAGMAF--VSLKPWEERNGDENSAEA 645 Query: 636 LRDRLRKDYVGI-STYVQPLEMGPPV--------GRPIQYRVSGPQIDKVREYAMGLAGV 686 + R + + I +V P M P + +G D + + L G+ Sbjct: 646 VIHRAKMELGKIRDGFVIPFNM-PAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 687 LDGNP-NIGDIVYDWNEPGKMLKIDIAQDKARQLGLSSEDVAQIMNSVVTGSAVTQVRDD 745 +P ++ + + E K+++ Q+KA+ LG+S D+ Q +++ + G+ V D Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDR 764 Query: 746 IYLVNVIGRAEDSERGSLETLESLQIVTPSGTSIPLKAFAKVSYELEQPLVWRRDRKPTI 805 + + +A+ R E ++ L + + +G +P AF + P + R + P++ Sbjct: 765 GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 806 TVKASLRGEIQPTDLVARLAPEVKRFADGLPANYRIEVGGTVEESGKAEGPIAKVVPLML 865 + +GE P ++ A LPA + G + + +V + Sbjct: 825 EI----QGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISF 880 Query: 866 FLMATFLMIQLQSVQKLFLVASVAPLGLIGVVAALLPTGTPMGFVAILGILALIGIIIRN 925 ++ L +S V V PLG++GV+ A ++G+L IG+ +N Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 926 SVILVTQI-DAFEKDGKTPWEAVLEATHHRTRPILLTAAAASLGMIPIA------REVFW 978 ++++V D EK+GK EA L A R RPIL+T+ A LG++P+A Sbjct: 941 AILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQN 1000 Query: 979 GPMAYAMIGGIVAATLLTLIFLPALYVAWYRI 1010 + ++GG+V+ATLL + F+P +V R Sbjct: 1001 -AVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 79.1 bits (195), Expect = 5e-17 Identities = 79/517 (15%), Positives = 172/517 (33%), Gaps = 35/517 (6%) Query: 518 LAMRRRWTTIFLTALLFGVSLFLMKFVQHQFFPSSDRPELLVDLNLPQNSSIHETRAVMD 577 +RR L +L + + +P+ P + V N P + V Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 578 RLEATLKDDEDIDHWSAYVGEGAIRFYLPLDQQLQNNFYGQLVIVTKDLEARERVAARLR 637 +E + +++ + S+ + A + L Q + V V + L Sbjct: 64 VIEQNMNGIDNLMYMSS-TSDSAGSVTITLTFQSGTDPDIAQVQVQ---NKLQLATPLLP 119 Query: 638 DRLRKDYVGISTYVQPLEMG----PPVGRPIQYRVSGPQIDKVREYAMGLAGVLDGNPNI 693 +++ + + M Q +S V++ L GV D Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 694 GDIVYDWNEPGKMLKIDIAQDKARQLGLSSEDVAQIMNS----VVTGSAVTQVRDDIYLV 749 ++I + D + L+ DV + + G + Sbjct: 180 AQ---------YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL 230 Query: 750 NVIGRAEDSERGSLETLESLQI-VTPSGTSIPLKAFAKVSYELE-QPLVWRRDRKPTITV 807 N A+ + E + + V G+ + LK A+V E ++ R + KP + Sbjct: 231 NASIIAQT-RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGL 289 Query: 808 KASLRGEIQPTDLVARLAPEVKRFADGLPANYRIEVGGTVEESGKAEGPIAKVVPLML-- 865 L D + ++ P ++ + + + I +VV + Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLY--PYDTTPFVQLSIHEVVKTLFEA 347 Query: 866 -FLMATFLMIQLQSVQKLFLVASVAPLGLIGVVAALLPTGTPMGFVAILGILALIGIIIR 924 L+ + + LQ+++ + P+ L+G A L G + + + G++ IG+++ Sbjct: 348 IMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVD 407 Query: 925 NSVILVTQI-DAFEKDGKTPWEAVLEATHHRTRPILLTAAAASLGMIPIA-----REVFW 978 +++++V + +D P EA ++ ++ A S IP+A + Sbjct: 408 DAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIY 467 Query: 979 GPMAYAMIGGIVAATLLTLIFLPALYVAWYRIPEPGR 1015 + ++ + + L+ LI PAL + Sbjct: 468 RQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.8 bits (93), Expect = 1e-05 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 3/103 (2%) Query: 63 TNGRIASRLFDVGDFVGKGALLATLDPTDQQNQLRASQGDLASAEAQLIDAQANARRQEE 122 N + + G+ V KG +L L + +Q L A + Q +R E Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 123 --LFARSVTAQARLDDARTR-LKTSQASFDQAKAAVQQARDQL 162 L + + + + + + + Q + Q Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Score = 39.0 bits (91), Expect = 2e-05 Identities = 23/182 (12%), Positives = 59/182 (32%), Gaps = 31/182 (17%) Query: 51 IQARYESVLGFRTNGRIASRLFDVGDFVGKGALLATLDPTDQQNQLRASQGDLASAEAQL 110 I ++ S L + K A+L +Q+N+ + +L ++QL Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQ-AIAKHAVL------EQENKYVEAVNELRVYKSQL 275 Query: 111 IDAQANARRQEELFARSVTAQARLDDARTRLKTSQASFDQAKAAVQQARDQLSYTRLVTD 170 ++ +E + Q ++ +L+ + + + + ++ + + Sbjct: 276 EQIESEILSAKE--EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAP 333 Query: 171 FDGVITTW--HAEAGQVVSAGQAVVTLARPEVREAVFDLPTEVAESLPADARFLVSAQLD 228 + H E G VV+ + ++ + P D V+A + Sbjct: 334 VSVKVQQLKVHTE-GGVVTTAETLMVIV-------------------PEDDTLEVTALVQ 373 Query: 229 PQ 230 + Sbjct: 374 NK 375
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 1e-08 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 9/129 (6%) Query: 75 VGGKIVERLVDVGDHVAAGQVLARLDP-------QDQRSNVENAQAAVAAQQAQSKLADL 127 + E +V G+ V G VL +L +S++ A+ Q S+ +L Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 128 NYQRQKALLPKGYTSQSEYDQALASVRSAQSSLKAAQAQLANARDLLSYTELRASDAGVI 187 N + L + Y ++ L + Q Q L+ + RA V+ Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE--LNLDKKRAERLTVL 220 Query: 188 TARQAEVGQ 196 Sbjct: 221 ARINRYENL 229 Score = 42.9 bits (101), Expect = 2e-06 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 26/216 (12%) Query: 58 SITGDIQARVQADQSFRVGGKIVERLVDVGDHVAAGQVLARLDPQDQRSNVENAQAAVAA 117 ++ I + + L+ A A L+ +++ N + Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQ----AIAKHAVLEQENKYVEAVNELRVYKS 273 Query: 118 QQAQSKLADLNYQRQKALLPKGYTSQSEYDQALASVRSAQSSLKAAQAQLANARDLLSYT 177 Q Q + L+ + + L+ + + ++ L +R ++ +LA + + Sbjct: 274 QLEQIESEILSAKEEYQLVTQLFKNE-----ILDKLRQTTDNIGLLTLELAKNEERQQAS 328 Query: 178 ELRASDAGVITARQA-EVGQVVQATVPIFTLARDGERDAVFNVYESLFSHDVDGQRITVS 236 +RA + + + G VV + + + D V + + D+ I V Sbjct: 329 VIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPE---DDTLEVTALVQNKDIG--FINVG 383 Query: 237 LLGKPEVTA---------SGKVREITP--TVDERSG 261 +V A GKV+ I D+R G Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 115 bits (288), Expect = 2e-32 Identities = 66/193 (34%), Positives = 93/193 (48%), Gaps = 17/193 (8%) Query: 137 AEPTPQPPAAAPEPTPPKIEEPKPEPPKPKPVEKPKPKPKPKPKPVENAIPKAKPKPEPK 196 P A P P P EP+PEP P E P KPKPKP KPKP+P Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP--------KPKPKPV 103 Query: 197 PKPEPEPSTEASSQPSPSSAAPPPPAPTVGQSTPGAQTAPSGSQGPAGLPSGSLNDSDIK 256 K + +P + P +P + ++ + + + S + S + Sbjct: 104 KKVQEQP------KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA---SGPR 154 Query: 257 PLRMDPPVYPRMAQARGIEGRVKVLFTITSDGRIDDIQVLESVPSRMFDREVRQAMAKWR 316 L + P YP AQA IEG+VKV F +T DGR+D++Q+L + P+ MF+REV+ AM +WR Sbjct: 155 ALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWR 214 Query: 317 FEPRVSGGKIVAR 329 +EP G IV Sbjct: 215 YEPGKPGSGIVVN 227
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 6e-04 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 286 AATLFLFMLLQPIVGALSDKIGRRPILIAFGVLGTVFTYPILSTLHSV 333 A + P++GALSD+ GRRP+L+ + G Y I++T + Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLV-SLAGAAVDYAIMATAPFL 96 Score = 34.4 bits (79), Expect = 9e-04 Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 33/192 (17%) Query: 49 KAFFPQGDMTAQLLNTAAIFAVGFLMRPIGGWLMGIYADRKGRKAALLASVLLMCFGSLI 108 + D+TA A++A LM+ ++G +DR GR+ LL S+ I Sbjct: 33 RDLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 109 IALTPSYETIGVAAPILLVVARLLQGLSVGGEYGTSATYLSEMANKEQR----GFFSSFQ 164 +A P +L + R++ G++ G + Y++++ + ++R GF S+ Sbjct: 90 MATAPFLW--------VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACF 140 Query: 165 YVTLISGQLIALAVLIVLQQTLTVEQLESWGWRVPFFIGA----LCAVVAMFLRRGMEET 220 +++G ++ + + PFF A L + FL + Sbjct: 141 GFGMVAGPVLG-------------GLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKG 187 Query: 221 ESFSKKKEEPKE 232 E ++E Sbjct: 188 ERRPLRREALNP 199
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 31.9 bits (72), Expect = 0.008 Identities = 11/44 (25%), Positives = 23/44 (52%) Query: 360 PVAVAVSAITTLLTPYLIRAADPLSQHLANAMPQRMARIFGHYG 403 PV+ V A+T +++ L + + +H+A+ M +A +G Sbjct: 394 PVSALVGAVTGIISGILEASKQAMFEHVASKMADVIAEWEKKHG 437
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 4e-29 Identities = 78/261 (29%), Positives = 119/261 (45%), Gaps = 24/261 (9%) Query: 9 GQVALISGAGSELGIGFAIARRLAREGVRLL-ITASSERIRQRAEELSACGHDVRAASAD 67 G++A I+GA GIG A+AR LA +G + + + E++ + L A A AD Sbjct: 8 GKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 LTDEAQVQGLLDWAEAQWGRVDILVNNAGMAQLDSAEPFSAVEATSLRDWQLSLSRNLTS 127 + D A + + E + G +DILVN AG+ + + + S +W+ + S N T Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRP------GLIHSLSDEEWEATFSVNSTG 119 Query: 128 AFLLTRGLLPGMRERGYGRIVNVASTTGTRGSNPGEAAYSAAKAGLVGWSMGLALEVAKS 187 F +R + M +R G IV V S AAY+++KA V ++ L LE+A+ Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGV-PRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 188 GITVNSVAPG-------WIATASSTAEER-------QAALASPSGRAGRPEEVAAAVAFL 233 I N V+PG W A E+ P + +P ++A AV FL Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 234 ASPEASFVNGELLVVDGGNCL 254 S +A + L VDGG L Sbjct: 239 VSGQAGHITMHNLCVDGGATL 259
>PF06580#Sensor histidine kinase Length = 349 Score = 53.3 bits (128), Expect = 1e-09 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 27/165 (16%) Query: 430 LINDLLNFSRYQTGMQKLELASC----DLVDLLTQAQQ-RFIPKGEARRVSLQLELGDEL 484 ++ L RY S +VD Q +F R+ + ++ + Sbjct: 196 MLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQF-----EDRLQFENQINPAI 250 Query: 485 PRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGIPFSQQGR 544 +Q+ + ++ +++N +++ + +GG+I L+ + V + VE+ G Sbjct: 251 MDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL-------- 302 Query: 545 IFEPFVQVGRKKGGAGLGLALCKEIIQLHGG---RIAVRSQPGQG 586 + K G GL +E +Q+ G +I + + G+ Sbjct: 303 ------ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 448 bits (1154), Expect = e-157 Identities = 165/476 (34%), Positives = 250/476 (52%), Gaps = 39/476 (8%) Query: 9 GRILLVDDEPAILRTFRYCLEDEGYSVATASSAPQAEALLQRQVFDLCFLDLRLGEDNGL 68 IL+ DD+ AI L GY V S+A + DL D+ + ++N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 69 DVLAQMRVQAPWMRVVIVTAHSAVDTAVDAMQAGAVDYLVKPCSPDQLRLAAAKQLEVRQ 128 D+L +++ P + V++++A + TA+ A + GA DYL KP +L + L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 129 LTARLEALEDEVRRQGDGLESHSPAMAAVLETARQVAATDANILILGESGSGKGELARAI 188 R + ++ + G L S AM + ++ TD ++I GESG+GK +ARA+ Sbjct: 124 ---RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 189 HTWSKRAKKPQVTINCPSLTAELMESELFGHSRGAFTGATESTLGRVSQADGGTLFLDEI 248 H + KR P V IN ++ +L+ESELFGH +GAFTGA + GR QA+GGTLFLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 249 GDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNRDLGAMVAQGQFREDLLYRL 308 GD P+ Q +LLR +Q EY VG R+DVRI+AATN+DL + QG FREDL YRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 309 NVIVLNLPPLRERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELR 368 NV+ L LPPLR+RAEDI L F+ + K+ G + F + A E M+ +PWPGNVREL Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 369 NVIERASIICNQELVDVDHLGFSAAQSASSAPR---------------IGESLS------ 407 N++ R + + Q+++ + + +P + E++ Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 408 -------------LEDLEKAHITAVMASSA-TLDQAAKTLGIDASTLYRKRKQYGL 449 L ++E I A + ++ +AA LG++ +TL +K ++ G+ Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.5 bits (71), Expect = 0.007 Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 292 AYGAPKAISSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGI 332 + A ++ + TGY + +T+++S I + + Sbjct: 186 SNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAM 226
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.8 bits (64), Expect = 0.041 Identities = 5/30 (16%), Positives = 15/30 (50%) Query: 1 MPNQQRPILKARLEQLIALVGGLMARYPRT 30 Q++ ++++R+ + LV ++ T Sbjct: 506 TSVQEQAMIRSRVSGALTLVKEMLGTKDGT 535
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.7 bits (85), Expect = 1e-04 Identities = 59/273 (21%), Positives = 97/273 (35%), Gaps = 31/273 (11%) Query: 61 LMRPLGAVFLGAYIDRHGRRQGLIITLGLMAMGTLLIAFVPGYATLGVAAPLLVLF-GRL 119 LM+ A LGA DR GRR L+++ L YA + A L VL+ GR+ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVS---------LAGAAVDYAIMATAPFLWVLYIGRI 104 Query: 120 LQGFSAGVELGGVSVYLSEIATPGRKGFFVSWQSASQQVAVVFAGLLGVLLNQWLSPQDM 179 + G + G Y+++I + + SA +V +LG L M Sbjct: 105 VAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---------M 154 Query: 180 GEWGWRVPFFIGCLIVPALFVIRRSLEETPEFEARTHRPSLSQVLRSIGQNFGVVLAGTA 239 G + PFF + F+ PE RP L + + +F T Sbjct: 155 GGFSPHAPFFAAAALNGLNFLT--GCFLLPESHKGERRP-LRREALNPLASFRWARGMTV 211 Query: 240 MVVMTTVSFYLI------TAYTPTFGKNELQLSDLDSLLVTMCIGLSN-FIWLPVMGAFS 292 + + V F + A FG++ + G+ + + G + Sbjct: 212 VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271 Query: 293 DRIGRKPLLLGASALALLTAYPALSWLVREPSF 325 R+G + L+ +A T Y L++ R Sbjct: 272 ARLGERRALM-LGMIADGTGYILLAFATRGWMA 303 Score = 31.3 bits (71), Expect = 0.006 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 258 FGKNELQLSDLDSLLVTMCIGLSNFIWLPVMGAFSDRIGRKPLLL 302 + + LL L F PV+GA SDR GR+P+LL Sbjct: 35 LVHSNDVTAHYGILLA--LYALMQFACAPVLGALSDRFGRRPVLL 77
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.033 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Query: 11 ISQQFNAELEDVRSHLLAMGGLVEKQVNDAVNALIDADSGLAQQVREIDDQINQMERNID 70 + QF + +R +KQVN A+ A +D + A+Q+ ++DQI+++ Sbjct: 139 LVNQFKTTDQYLR--------DQDKQVNIAIGASVDQINNYAKQIASLNDQISRLTGVGA 190 Query: 71 EECVR-ILARRQPAASDLRLIISISKSV 97 +L +R S+L I+ + SV Sbjct: 191 GASPNNLLDQRDQLVSELNQIVGVEVSV 218
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 8e-23 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Query: 1 MSKVSALVVDDAPFIRDLMKKGLRDNFPGLHIEEAVNGRKAQQLLSRQNVDLILCDWEMP 60 M+ + LV DD IR ++ + L + G + N + ++ + DL++ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQAL--SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMSGLELLTWCRAQENLKTTPFIMVTSRGDKENVVQAIQAGVSDYIGKPFSNDQLVAKIK 120 + + +LL + P ++++++ ++A + G DY+ KPF +L+ I Sbjct: 59 DENAFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 121 KALSRSGKLEALAAHAPRR 139 +AL+ + + + Sbjct: 117 RALAEPKRRPSKLEDDSQD 135
>PF06580#Sensor histidine kinase Length = 349 Score = 37.9 bits (88), Expect = 6e-05 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 25/99 (25%) Query: 333 LVFNAVKY----TPDEGEIRIRWWADEQGAHLSVQDTGIGVDPKHLPRLTERFYRVDSSR 388 LV N +K+ P G+I ++ D L V++TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK----------------- 305 Query: 389 ASNTGGTGLGLAIVKHVLIR---HRARLEISSVPGKGST 424 + TG GL V+ L A++++S GK + Sbjct: 306 -NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 2e-26 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 M G TIL+ DD+A IR ++ AL AGY+ N I DL++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 + +L R+K+ D+P+++++A+ I+ E GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 121 LRRT 124 L Sbjct: 119 LAEP 122
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.9 bits (62), Expect = 0.010 Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 65 FQITVALAMFVSFLLMLVVIGFFLLGLVCLAALVLTIIAGI 105 VA++ V FL + + + + + + + L I+ + Sbjct: 872 APALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVL 912
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 27.9 bits (62), Expect = 0.041 Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 105 HGEGGTLVGAPLSGRVLIIDDVITAGTAIREVMQIIDAQGARAAGV 150 H + + +SG VL + +T G + + + ++ A GA+ A V Sbjct: 686 HSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKV 731
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.008 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 1/109 (0%) Query: 82 LRQRKAAQAQASSDAQLLRLYSSLEDVDRARERRLAELDGLSSVARGNLQSLKLQQANLQ 141 L + + + + L +SSL + + E + A L+ K Q ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 142 GQAAN-QERAGRPVAQALVDQLDDLKQEEKRLQGEIGRFQKAREDAERT 189 + + +E + LD L+Q + K E + + Sbjct: 280 SEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQAS 328
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.041 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 21/147 (14%) Query: 33 IDLDRLDHNIDVVMRSVRRGGKHLRL--VEKSLPSPGLLAYIARRAGTRRLMSFHQPFLN 90 +DL L N+ VR+ H R+ V K+ + I G Sbjct: 9 LDLQALKQNL----SIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGF-------- 56 Query: 91 HDAVAFADADILL---GKPLPVRSAELFYREHKGAFDPARQLQWLIDTPQRLRQYLALAQ 147 A+ + I L G P+ E F+ +L + + +L+ Sbjct: 57 --ALLNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNAR- 113 Query: 148 GLGTRMRVNIELDVGLHRGGVADQAAL 174 L + + ++++ G++R G L Sbjct: 114 -LKAPLDIYLKVNSGMNRLGFQPDRVL 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.039 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 18/136 (13%) Query: 161 RALVGPAFEPLGIELIHAAPPYAGEYLRLLGPQVRFGCLHNRMAIASHWLDMRLPNHNLP 220 R + + E+I + R G L A+ + R + Sbjct: 364 RLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENM---RQYFASFG 420 Query: 221 ALRQALALLEQESTQVHRKLDLVQAVERAIARDLSLGSQIERISAELNMSSRTLRRRLAE 280 L ++ ++ L ++ A+ + + L ++ TLR+++ E Sbjct: 421 DALPPSGLYDRVLAEMEYPL-ILAALTAT-------RGNQIKAADLLGLNRNTLRKKIRE 472 Query: 281 HGLTFEALLEQVRRGR 296 G+ V R Sbjct: 473 LGV-------SVYRSS 481
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 54.8 bits (132), Expect = 8e-11 Identities = 66/301 (21%), Positives = 116/301 (38%), Gaps = 61/301 (20%) Query: 26 VGKTLVIKYGGNAMESEELKAGF----------ARDVVLMKAVGINPVVVHGGGPQIGDL 75 +GK +VI GGNA++ K + AR + + A G V+ HG GPQ+G L Sbjct: 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSL 60 Query: 76 LKRLSIESHFIDGMRVTDAATMDVV-----------------EMVLGGQVNKDIVNLINR 118 L L +++ A MDV + + K +V +I + Sbjct: 61 L--LHMDAG--QATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQ 116 Query: 119 -----------HGGSAIG--LTGKDAELIRAKKLTVTRQ---------TPEMTKPEIIDI 156 + +G + A+ + +K + ++ P ++ Sbjct: 117 TIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEA 176 Query: 157 GHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLML 216 + V G++ + G +PVI G E+ I+ DL K+AE + A+ M+ Sbjct: 177 ETIK--KLVERGVIVIASGGGGVPVILEDGEIKGVEAV-IDKDLAGEKLAEEVNADIFMI 233 Query: 217 LTNIAGLMDKQG----QVLTGLSTEQVNELIADGT-IYGGMLPKIRCALEAVQGGVTSAH 271 LT++ G G Q L + E++ + +G G M PK+ A+ ++ G A Sbjct: 234 LTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAI 293 Query: 272 I 272 I Sbjct: 294 I 294
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.042 Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 4/109 (3%) Query: 317 QRTAKPPVPSLPGFAPLIQALARQPRR-KPEPTSVPSPAKAAPVAPVAVAKAPPREEPAL 375 Q P + A P+ +P P V P P +AP E Sbjct: 39 QVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 98 Query: 376 ADPLFQNTDILDIDILDEDQDLLGLEQT---PIMSTAKAPTLPASIFRA 421 P + + ++ D + + A+ + A+ + Sbjct: 99 PKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATS 147
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 3e-06 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%) Query: 90 AYLHKLAVRRTHAGRGVSSALIEACRHAARTQGCAKLRLD--------CHPNLRGLYERL 141 A + +AV + + +GV +AL+ A+ L L+ CH Y + Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACH-----FYAKH 144 Query: 142 GFT--HVDTF 149 F VDT Sbjct: 145 HFIIGAVDTM 154
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 32.4 bits (74), Expect = 0.002 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 38/158 (24%) Query: 197 VVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEI----QRRYGLSVEE--AGLAKKQG 250 VVDIG T ++V+ +Y+ GG + E I +R YG + E A K + Sbjct: 163 VVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEI 222 Query: 251 G--LPDDYDSEV-------------------------LRPFKDAVVQQVSRSLQFF---F 280 G P D E+ L+ +V V +L+ Sbjct: 223 GSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPEL 282 Query: 281 AAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVA 318 A+ +VL GG A +++LDRL+ ++ G P +VA Sbjct: 283 ASDISER--GMVLTGGGALLRNLDRLLMEETGIPVVVA 318
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 312 bits (800), Expect = 1e-98 Identities = 110/419 (26%), Positives = 183/419 (43%), Gaps = 53/419 (12%) Query: 325 VPWDQALDLVLKTKGLDKRKLGNVLLVAPADEIAARERQEL--------EAQKQIAELAP 376 + W A D+V L+K + L + + A ER Q+ IA + Sbjct: 199 LSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQ 258 Query: 377 LRRE--------LIQVNYAKAADIAKLFQSVTSDGGQEGKEGGRGS--------ITVDDR 420 L R+ +I + YAKA+D+ ++ + S Q K+ + I + Sbjct: 259 LDRQQATQGNTKVIYLKYAKASDLVEVLTGI-SSTMQSEKQAAKPVAALDKNIIIKAHGQ 317 Query: 421 TNSIIAYQPQERLDELRRIVSQLDIPVRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNW 480 TN++I + +++L R+++QLDI QV++EA I E +LG++W Sbjct: 318 TNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKN----- 372 Query: 481 NGYGKDGNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDN 540 G + N G+ + AG + GT S A + +GI GF N Sbjct: 373 AGMTQFTNSGLPISTAI-----AGANQYNKDGTVSSSLA----SALSSFNGIAAGFYQGN 423 Query: 541 IILDLQLSAMEKTGNGEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATSTSF----- 595 + L+A+ + +I++ P +VT D A GQEVP S + + F Sbjct: 424 --WAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVER 481 Query: 596 KEAALSLEVTPQITPDNRIIVEVK-----VTKDAPDFDRALNGVPPINKNEVNAKILVND 650 K + L+V PQI + +++E++ V A L N VN +LV Sbjct: 482 KTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGAT--FNTRTVNNAVLVGS 539 Query: 651 GETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQA 709 GET+V+GG+ + S + DKVP LGD+P +G LFR + K L++F+ P ++ ++ Sbjct: 540 GETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRD 598 Score = 52.6 bits (126), Expect = 4e-09 Identities = 31/188 (16%), Positives = 74/188 (39%), Gaps = 13/188 (6%) Query: 281 GEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQN-VPWDQALDL---VLK 336 E+ S +F+ D++ + ++ + ++ +V+G IT+R + + +Q VL Sbjct: 27 AEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLD 86 Query: 337 TKGLDKRKLGN-VLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKAADIAKL 395 G + N VL V + + A + + + ++ + A D+A L Sbjct: 87 VYGFAVINMNNGVLKVVRSKD-AKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPL 145 Query: 396 FQSVTSDGGQEGKEGGRGSITVDDRTNSIIAYQPQERLDELRRIVSQLDIPVRQVMIEAR 455 + + + G GS+ + +N ++ + L IV ++D + ++ Sbjct: 146 LRQLNDN-------AGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVP 198 Query: 456 IVEANVGY 463 + A+ Sbjct: 199 LSWASAAD 206
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.011 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 4 LILVGPMGAGKSTIGRLLAKELHLAFKDSDKEI 36 ++L G G GKST+ L F D+ +I Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDF--FSDTHFDI 629
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 43.0 bits (101), Expect = 1e-06 Identities = 21/108 (19%), Positives = 31/108 (28%) Query: 355 LPSAAVPPTVSSSAPPVTPLANNGVTPMHPVPPAPTEPTAPAATPTPAQTPAPAAPVASA 414 + A + P + PP + P PP P P P P V Sbjct: 55 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQP 114 Query: 415 PASKPAPAPAPAKPAASKPATTAAAKPAPAPAAKPASGVGAGSQWYRN 462 PA P + + A A +KP + V +G + Sbjct: 115 KRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSR 162 Score = 43.0 bits (101), Expect = 1e-06 Identities = 24/104 (23%), Positives = 32/104 (30%), Gaps = 1/104 (0%) Query: 355 LPSAAVPPTVSSSAPPVTPLANNGVTPMHPVPPAPTEPTAPAATPTPAQTPAPAAPVASA 414 LP+ A P +V+ AP P PV EP P A Sbjct: 43 LPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 102 Query: 415 PASKPA-PAPAPAKPAASKPATTAAAKPAPAPAAKPASGVGAGS 457 P KP P + + A+ APA +S A + Sbjct: 103 PKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146 Score = 34.6 bits (79), Expect = 7e-04 Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 11/72 (15%) Query: 383 HPVPPAPTEP-----TAPAATPTPAQTPAPAAPVASAPASKPAPAPAPAKPAASKPATTA 437 PAP +P APA P P PV +P P P P P K A Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVV-----EPEPEPEPI-PEPPKEAPVV 93 Query: 438 AAKPAPAPAAKP 449 KP P P KP Sbjct: 94 IEKPKPKPKPKP 105
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 8e-06 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 57 DGQPVGLLVTRETADGFL-VDNLAVLPECKGQGIGRQLLERAERDATSLGYRSLYLYTNE 115 + +G + R +G+ ++++AV + + +G+G LL +A A + L L T + Sbjct: 73 ENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132 Query: 116 RMTENIELYARVGY 129 YA+ + Sbjct: 133 INISACHFYAKHHF 146
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.7 bits (61), Expect = 0.045 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 14 SHILRGLSFEAKVGEVTCLLGRNGVGKTTLLRCLMGL 50 H+ R + K L G G+GK+TL+ L+GL Sbjct: 583 GHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 2e-16 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%) Query: 13 VLVVDDTPDNLLLMRELLE-EQYRVRTAGSGPAGLRAAVEEPRPDLILLDVNMPGMDGYE 71 +LV DD ++ + L Y VR + R + DL++ DV MP + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRW-IAAGDGDLVVTDVVMPDENAFD 64 Query: 72 VCRRLKA-DPLTRDIPLMFLTARADRDDEQQGLALGAVDYLGKPVSPPIVLARVRTHLQL 130 + R+K P D+P++ ++A+ + GA DYL KP ++ + L Sbjct: 65 LLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.014 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 218 PELRQTRYAKEMWALYEAGELTAETPLSGTFVEAEEAADVRAVLREIEAAQREEARRQAR 277 + AKE + +A T E SG+ E +E +E ++EE + Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGS--ETKETQ--TTETKETATVEKEEKAKVET 1116 Query: 278 RQADDAPRGEREEPP 292 + + P+ + P Sbjct: 1117 EKTQEVPKVTSQVSP 1131
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.4 bits (68), Expect = 0.002 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 3 IGEAAKKSGLTPKMIRYYESIELLRPAGRSASGYRHYNENDLHTLAFIRRSRDLGFSLDE 62 G + + +G P+ + +++L PAG +RHYN +DL+ + +G S Sbjct: 933 FGLSTEANGAKPQSVWIERTVDL--PAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTP 990 Query: 63 VGKLLTLWQDRQRASADVKALA 84 T+++D + + Sbjct: 991 TDYTYTVYRDGTKIKEGLTETT 1012
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.002 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 20/81 (24%) Query: 360 LVGNALRY----TPAGGQVEIRVENRAQHAVLRVRDNGPGVALEEQQAIFTRFYRSPATS 415 LV N +++ P GG++ ++ L V + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA----------------LKN 306 Query: 416 SGEGSGLGLPIVKRIVELHFG 436 + E +G GL V+ +++ +G Sbjct: 307 TKESTGTGLQNVRERLQMLYG 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 1/123 (0%) Query: 2 RILLAEDDLLLGDGIRAGLRLEGDTVEWVIDGVAAENALVTDEFDLLVLDIGLPRRSGLD 61 IL+A+DD + + L G V + + + DL+V D+ +P + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 ILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARV-RALTRRTT 120 +L ++ PVL+++A++ + + GA DYL KPFDL EL + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GRA 123 + Sbjct: 125 RPS 127