>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 36.6 bits (85), Expect = 2e-04 Identities = 17/33 (51%), Positives = 20/33 (60%) Query: 349 LAGITIHAAQALGLEQTHGSLEQGKVADFVAWD 381 +A TI+ A A GL GSLE GK AD V W+ Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVLWN 438
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.004 Identities = 43/310 (13%), Positives = 91/310 (29%), Gaps = 14/310 (4%) Query: 479 KQYFVESGELAETFKFEKERNKKNYDALEKRAKLKNEKKKQLVKDLDGFFEHFKDENFTT 538 + + + E + LE +K L K L+G ++ Sbjct: 119 EARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKI 178 Query: 539 LIL---NKKIEIENKVYSFNENLVDYDSFITNIELEKVKFLEDLKSKFNIKIPSGVGFNR 595 L +E S + +++ ++ + + + + Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 238 Query: 596 EISNRIDKYNLVKENFLIELEKFNSNLNKLFVDFENKYGNKVDLKKRITDSLIQQEESYK 655 S E LE + L K N K + E Sbjct: 239 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Query: 656 QSISQLYSETNS--AIKELTEWATKEIRRNKEEGFKALVQLQTEVASVDFSSKSNEELIE 713 Q + +++ + + + ++ + E K Q + AS + + E Sbjct: 299 DLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358 Query: 714 LKSTVEKQFQNLSETVSN---SLKDIQTQINTSREQ----TSENTLSSSRLVSI--LETE 764 K +E + Q L E S + ++ ++ SRE ++S+L ++ L E Sbjct: 359 AKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKE 418 Query: 765 YEVLKEQQEE 774 E K+ E+ Sbjct: 419 LEESKKLTEK 428
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.5 bits (131), Expect = 4e-10 Identities = 71/362 (19%), Positives = 132/362 (36%), Gaps = 48/362 (13%) Query: 81 LPAFSQSFQISPASSSLALSLTTAFLAISIVLSSAFSQALGRRGVIFTSMLCAALLNIVS 140 LP + F PAS++ + +I + S LG + ++ ++ +++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 141 MLTPNWHSLLI-ARALEGLLLGGVPAVTMAWIAEEIAPEHLGKTMGLYIAGTAFGGMMGR 199 + ++ SLLI AR ++G PA+ M +A I E+ GK GL + A G +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 200 VGMGILVEYFSW---------------------------RTALGLLGAICFICSIAFLKL 232 G++ Y W + + G I I F L Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 233 LP--ASRNFVQKKGLNLGFHIQMWRAH---------LSNTKLLRLFAIGFLLTSV---FV 278 S +F+ L+ ++ R N + G ++ FV Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 279 TLFNYATFRLSGAPYSLSQTQISLIFLSYSFGMVSSSLAGSLADRFGKKTMMMSGFALMI 338 ++ Y + S ++ +IF ++ + G L DR G ++ G + Sbjct: 277 SMVPYMMKDVHQ--LSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS 334 Query: 339 LGSL---MTLLSSLFGIIIGIAFITTGFFITHSLTSSSVGAESKQAKAHAS-SLYLLFYY 394 + L L ++ + + I I F+ G T ++ S+ V + KQ +A A SL + Sbjct: 335 VSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394 Query: 395 MG 396 + Sbjct: 395 LS 396
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.5 bits (128), Expect = 3e-11 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 5 DASRRALHVIDTATDLFKQYGFNKVGVDQIIAESQINKGTFYSYFHSKERFIERCLVAQK 64 +A H++D A LF Q G + + +I + + +G Y +F K + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 EQLQEKVSVVSELYQNADLSDQLRQIYL 92 + E D LR+I + Sbjct: 68 SNIGELELEYQAK-FPGDPLSVLREILI 94
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.001 Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 4/62 (6%) Query: 95 ADVPPAPPAGGEMAPSAAPTDAVPPAPNQAAPAPQDPNTPPPAANPNQSADPMAKDGA-L 153 A S + T P P P PNQ+ PM + L Sbjct: 449 AKQAEELAKLRAGKASDSQTPDAKPGNK---AVPGKGQAPQAGTKPNQNKAPMKETKRQL 505 Query: 154 PA 155 P+ Sbjct: 506 PS 507
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 124 bits (313), Expect = 3e-34 Identities = 74/334 (22%), Positives = 120/334 (35%), Gaps = 69/334 (20%) Query: 130 VSLLNDPNVKAVYPNRINRTTTTESLPLINQPQANTNGFTGEGSSVAVLDTGVNYLHSDF 189 V ++ +K + +I P G G VAVLDTG + H D Sbjct: 5 VHIIPYQVIKQEQ----QVNEIPRGVEMIQAPAVWNQT-RGRGVKVAVLDTGCDADHPDL 59 Query: 190 GCTAVNTPSSTCRVVYSFDSAPDDGTLDDDGHGSNVSAIVSK---------VATKTKIIG 240 + R D + D +GHG++V+ ++ VA + ++ Sbjct: 60 KARII-----GGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLI 114 Query: 241 IDVFRKVRSQGKWVSTAYDSDILAGINWAVNNAQTYNIKAVNLSLGVPGVKYTSECSDSS 300 I V K + I+ GI +A+ + +++SLG P Sbjct: 115 IKVLNKQ-------GSGQYDWIIQGIYYAIEQ----KVDIISMSLGGPE-------DVPE 156 Query: 301 YGTAFANARAAGVVPVVASGND----AFPDGISSPACVAGAVRVGAVYDSNIGGVSWGNP 356 A A A+ ++ + A+GN+ D + P C + VGA Sbjct: 157 LHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGA-------------- 202 Query: 357 VKCSDPTTAADKVACFSNGGSLVTLLAPGAMITAGGY-----TMGGTSQATPHVAGAIAL 411 + FSN + V L+APG I + T GTS ATPHVAGA+AL Sbjct: 203 ------INFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALAL 256 Query: 412 LRA---NSVSPTESIDQTISRLKATGKPITDSRT 442 ++ S + + ++L P+ +S Sbjct: 257 IKQLANASFERDLTEPELYAQLIKRTIPLGNSPK 290
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 99.6 bits (248), Expect = 7e-28 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 11/121 (9%) Query: 48 TLGLPERLLFDFNDATLKQSHEAELTRLANQLNKYDLN--KLKIVGHTDDVGNPEYNQKL 105 L +LF+FN ATLK +A L +L +QL+ D + ++G+TD +G+ YNQ L Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGL 273 Query: 106 SEERAQSVANLFLTHGFKKENIYVIGRGSTQPYVPNTTNENR---------AINRRVAIV 156 SE RAQSV + ++ G + I G G + P NT + + A +RRV I Sbjct: 274 SERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 157 I 157 + Sbjct: 334 V 334
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 26.1 bits (57), Expect = 0.025 Identities = 7/26 (26%), Positives = 12/26 (46%) Query: 11 KMLLKLMKQIEAKPIIPIECQLWDEQ 36 K+L + K+ + + I Q WD Sbjct: 458 KILSQYNKEYSVERSVLITQQHWDTL 483
>PF03944#delta endotoxin Length = 633 Score = 28.1 bits (62), Expect = 0.018 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 12/70 (17%) Query: 40 FPSVSSNHVREVLRLDSSVTNQRL-----------ISAIEAAVIHVNEQLESLLSKAPTL 88 FPS S+N ++++LR NQRL ++ ++A V N Q+++ L+ Sbjct: 82 FPSGSTNLMQDILRETERFLNQRLNTDTVARVNAELTGLQANVEEFNRQVDNFLNPNRNA 141 Query: 89 VEIT-TKQVN 97 V ++ T VN Sbjct: 142 VPLSITSSVN 151
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 6e-06 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 24/110 (21%) Query: 320 VIQNLVSNALK--FTDVDGSGKVFIEAKQVGTNVEITVRDTGLGMTEQQMANLFHPRITA 377 ++Q LV N +K + GK+ ++ + V + V +TG + Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT----------- 307 Query: 378 SFKGTAGEKGAGLGLSLCKRFVEI---NQGKISVTSQKGVGTSFKVLLPS 424 ++ G GL + +++ + +I ++ ++G + VL+P Sbjct: 308 -------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIPG 349
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 28.1 bits (62), Expect = 0.028 Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 11 MNKRMKYAFYRNCLSVSIGITSCGALFFSSPTLAANAAP 49 M K++KY F+ +S+S ++SCG+ F + +P Sbjct: 1 MKKQLKYCFFSLFVSLSSILSSCGSTTFVLANFESYISP 39
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 2e-20 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 9 KVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQ 68 ++V DD IR L R G +V + IA + D+V D++MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 TCALIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVS 126 IK + ++PV+++S+++ K G+ +YL KPF EL+ I ++ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 4e-22 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 2 ARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGF 61 A IL+ DD + L++ GYDV SN A A DLV+ DVVMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFL 119 +I + +PV+++S ++ + +GA DYL KP + +LI +I + L Sbjct: 64 DLLPRI-KKAR-PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.8 bits (69), Expect = 0.018 Identities = 22/228 (9%), Positives = 63/228 (27%), Gaps = 10/228 (4%) Query: 463 STAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIREQIQETSKRI 522 + + + Q S NA++ +AQ +N +++ + + Q + Sbjct: 50 ANRFTSNIKGLTQASRNANDGISIAQ----TTEGALNEINNNLQRVRELSVQATNGTNSD 105 Query: 523 KRLGESSQEIGNIVSLINDIADQT-----NILALNAAIQASMAGEAGRGFAVVADEVQRL 577 L EI + I+ +++QT +L+ + ++ + G + ++ Sbjct: 106 SDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVK 165 Query: 578 AERSASATKQIETLV-KTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGD 636 + + + V + + + D D Sbjct: 166 SLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPD 225 Query: 637 LAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVS 684 + A+ + + + + T + A + Sbjct: 226 KVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGK 273
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 2e-19 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 1382 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEV 1441 I++ DD +R V ++ L R GYDV + + DL++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1442 LNLVRHHDMHQYMPIIMITSRTGEKHRERAFLLGVSQYMGKPFQEEELLENIDALLVASD 1501 L ++ +P+++++++ +A G Y+ KPF EL+ I L Sbjct: 66 LPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 1502 SEVK 1505 Sbjct: 124 RRPS 127
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.2 bits (68), Expect = 0.018 Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 179 YKYTVGQPFIYPRNDLNYAENFLHMM 204 Y T G+P PR + + +M Sbjct: 610 YHVTTGEPVCQPRRPNSRIDKVRYMF 635
>INTIMIN#Intimin signature. Length = 939 Score = 55.8 bits (134), Expect = 8e-09 Identities = 74/344 (21%), Positives = 113/344 (32%), Gaps = 40/344 (11%) Query: 361 VTAVATDPAGNTSGPATAVVDAVAPTVALDDVLTNDSTPALTGTVNDPTA--TVVVNVDG 418 VTA A D GN+S + ++ +D V D T T D T T V Sbjct: 527 VTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKK 586 Query: 419 VDYPAVNNG------DGTWTLADNTLPTLADGPHTITVTATDAAGNVGTDTGVVTVDTAA 472 N GT L+ N+ T G T+T+ + V + T+A Sbjct: 587 NGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVV--VSAKTAEMTSA 644 Query: 473 PNTAGVTFTIDSVTADNVINASE----AAGNVTITGVLKNIPADA--TNTAVTVVINGVT 526 N V F + + I A + A G IT +K + D +N VT Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 527 YNATVDKT--AGTWTVSVPGSGLVADADKTIDAKVTFTDAAGNSSTVNDTQIYTLDTAAP 584 + + +KT G V++ + + A+V+ + V Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTTP---GKSLVSARVSDVAVDVKAPEVEFF---------- 751 Query: 585 AAPVIDPVNGTDPITGTAEPGSTVTVTYPNGDTATVVAGPDG--SWSVPNPGLNDGDEVE 642 ID N I GT G TV G +G +G +W NP + D Sbjct: 752 TTLTIDDGNIE--IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASS 809 Query: 643 AIATDPAGNPSLPGTATVDAVGPNTDGVNFTVDSVTADNVINAS 686 T GT T+ + + +T+ + + V N S Sbjct: 810 GQVT-----LKEKGTTTISVISSDNQTATYTIATPNSLIVPNMS 848 Score = 54.3 bits (130), Expect = 2e-08 Identities = 77/380 (20%), Positives = 123/380 (32%), Gaps = 43/380 (11%) Query: 832 KVTAIATDPAGNPSLPGTATVDAVGPNTDGVNFTVDSVTADNVINASEASGNVTVTGVLK 891 KVTA A D GN S T+ + V TAD ++ + +T T +K Sbjct: 526 KVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVK 585 Query: 892 NVPADAANTVVTVVINGQTYTATVDSTAGTWTVSVPGSDLTADADKTIDAKVTFTDAAGN 951 AN V+ I + T +A + + G V A Sbjct: 586 KNGVAQANVPVSFNIV----SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEM 641 Query: 952 SSSVNDTHTYTVDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAGPDGS 1011 +S++N VD + + D + A +T T V+ + + Sbjct: 642 TSALNANAVIFVDQTKASITEIKA----DKTTAVANGQDAITYTVKVMKGDKPVSNQEVT 697 Query: 1012 W--SVPNPGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTN 1062 + ++ N + A +T+ PG VSA D+ AP V LT Sbjct: 698 FTTTLGKLSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTI 756 Query: 1063 DSTPA--LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPALTD--------- 1110 D + V TV + + A NG TW A+ + A D Sbjct: 757 DDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAI-ASVDASSGQVTLK 815 Query: 1111 --GPHTITVTATDAAGNVGNDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTY 1168 G TI+V ++D N TA TI T PN+ ++ ++ A Sbjct: 816 EKGTTTISVISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGK 866 Query: 1169 PDGTTATVVAGTDGSWSVPN 1188 ++ + +W N Sbjct: 867 LP-SSQNELENVFKAWGAAN 885 Score = 49.3 bits (117), Expect = 7e-07 Identities = 69/378 (18%), Positives = 111/378 (29%), Gaps = 21/378 (5%) Query: 641 VEAIATDPAGNPSLPGTATVDAVGPNTDGVNFTVDSVTADNVINASEASGNVTVTGVLKN 700 V A A D GN S T+ + V TAD ++ + +T T +K Sbjct: 527 VTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKK 586 Query: 701 VPADAANTVVTVVINGQTYTATVDSTAGTWTVSVPGSDLTADADKTIDAKVTFTDAAGNS 760 AN V+ I + T +A + + G V A + Sbjct: 587 NGVAQANVPVSFNIV----SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMT 642 Query: 761 SSVNDTQTYTIDTTAPDAPVINPVNGTDPITGTAEPGSTVTVTYPDGSTTTVVAGPDGTW 820 S++N +D T I D T A +T T V+ + T+ Sbjct: 643 SALNANAVIFVDQTKASITEIKA----DKTTAVANGQDAITYTVKVMKGDKPVSNQEVTF 698 Query: 821 TVPNPGLNDGDKVTAIATDPAGNPSLPGTATVDAVGPNTDGVNFTVDSVTADNVINASEA 880 T G A T V V V + + + Sbjct: 699 TT-TLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTID 757 Query: 881 SGNVTV--TGVLKNVPADAANTVVTVVINGQTYTATVDSTAGTWTVSVPGSDLTADADKT 938 GN+ + TGV +P V + A+ + TW + P + Sbjct: 758 DGNIEIVGTGVKGKLPT------VWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQ 811 Query: 939 IDAKVTFTDAAGNSSSVNDTHTYTVDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPD 998 + K T SS N T TYT+ T PN+ ++ ++ A Sbjct: 812 VTLKEKGTTTISVISSDNQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP 868 Query: 999 GTTATVVAGPDGSWSVPN 1016 ++ + +W N Sbjct: 869 -SSQNELENVFKAWGAAN 885 Score = 49.3 bits (117), Expect = 7e-07 Identities = 74/372 (19%), Positives = 122/372 (32%), Gaps = 48/372 (12%) Query: 2229 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 2287 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 2288 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 2340 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 2341 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGTDGTW--SVPN 2392 A +D A+ D + A +T T V+ + T+ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 2393 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 2443 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 2444 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPVL----------ADGPHTIT 2492 + V TV + + A NG TW A+ + + G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 2493 VTATDAAGNVGNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATV 2552 V ++D N TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 2553 VAGTDGSWSVPN 2564 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 48.1 bits (114), Expect = 2e-06 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 2745 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 2803 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 2804 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 2856 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 2857 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSW--SVPN 2908 A +D A+ D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 2909 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 2959 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 2960 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPTL----------ADGPHTIT 3008 + V TV + + A NG TW A+ + ++ G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 3009 VTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATV 3068 V ++D TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 3069 VAGTDGTWSVPN 3080 + W N Sbjct: 874 LENVFKAWGAAN 885 Score = 47.4 bits (112), Expect = 3e-06 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 3777 TVTATATDPAGNTSLPGTGTVSADITPPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 3835 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 3836 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 3888 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 3889 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSW--SVPN 3940 A +D A+ D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 3941 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 3991 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 3992 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPVL----------ADGPHTIT 4040 + V TV + + A NG TW A+ + + G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 4041 VTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATV 4100 V ++D TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 4101 VAGTDGSWSVPN 4112 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 47.0 bits (111), Expect = 4e-06 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 3433 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 3491 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 3492 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 3544 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 3545 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSW--SVPN 3596 A +D A+ D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 3597 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 3647 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 3648 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPVL----------ADGPHTIT 3696 + V TV + + A NG TW A+ + + G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 3697 VTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATV 3756 V ++D TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 3757 VAGTDGSWSVPN 3768 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 46.2 bits (109), Expect = 6e-06 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 1369 TVTATATDPAGNTSLPGTGTVSADITPPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 1427 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 1428 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 1480 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 1481 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSW--SVPN 1532 A +D A+ D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 1533 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 1583 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 1584 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPVL----------ADGPHTIT 1632 + V TV + + A NG TW A+ + + G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 1633 VTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATV 1692 V ++D TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 1693 VAGPDGSWSVPN 1704 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 45.4 bits (107), Expect = 1e-05 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 3089 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 3147 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 3148 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 3200 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 3201 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSW--SVPN 3252 A +D A+ D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 3253 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDMLTNDSTPA-- 3303 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 3304 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPVL----------ADGPHTIT 3352 + V TV + + A NG TW A+ + + G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 3353 VTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATV 3412 V ++D TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 3413 VAGTDGSWSVPN 3424 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 44.7 bits (105), Expect = 2e-05 Identities = 86/401 (21%), Positives = 136/401 (33%), Gaps = 79/401 (19%) Query: 1104 TLPALTDGP---HTITVTATDAAGNVGNDTAVVTIDTTAPNAPVLDPINATDPVSGTAEA 1160 LPA G + +T A D GN N+ ++TI T N V+D + TD + A Sbjct: 513 ILPAYVQGGSNVYKVTARAYDRNGNSSNN-VLLTI-TVLSNGQVVDQVGVTDFTADKTSA 570 Query: 1161 GSTVTVTYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATA--------TDPAG----- 1207 + DGT A T V V + V+ TA T+ +G Sbjct: 571 KA-------DGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVT 623 Query: 1208 -NTSLPGTGTVSADITAPVVALDD---VLTNDSTPALTGTVNDPTA---------TVVVN 1254 + PG VSA AL+ + + + ++T D T T V Sbjct: 624 LKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVK 683 Query: 1255 VDGTDYPAVNNGDGTWTLADNTLPVL-----ADGPHTITVTATDAA--------GNAGTD 1301 V D P V+N + T+T L +G +T+T+T + D Sbjct: 684 VMKGDKP-VSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVD 742 Query: 1302 TAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDG--SWSVP 1359 ++ +D N + GT G TV G +G +G +W Sbjct: 743 VKAPEVEFFTT--LTIDDGNIE--IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSA 798 Query: 1360 NPGNLVDGDTVTATATDPAGNTSLPGTGTVSADITPPVVALDDVLTNDSTPALTGTVNDP 1419 NP A+ +G +L GT + + ++D+ A T T+ P Sbjct: 799 NPA--------IASVDASSGQVTLKEKGTTTISVI----------SSDNQTA-TYTIATP 839 Query: 1420 TATVVVNV--DGTDYPAVNNGDGTWTLADNTLPVLADGPHT 1458 + +V N+ T AVN ++ L + Sbjct: 840 NSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKA 880 Score = 42.0 bits (98), Expect = 1e-04 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 15/220 (6%) Query: 6740 GQIVIHAEAVDAQGNVDVADADVTLTID---TTPQDLITAITVPED---LNGDGILNADE 6793 GQ+V D + A AD T I T ++ + VP ++G +L+A+ Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANS 611 Query: 6794 LGTDGSFNAQVALGPDAIDGTVVNV---NGTNYTVTAADLANGYITATLDATAADPVT-- 6848 T+GS A V L D VV+ T+ A + A++ AD T Sbjct: 612 ANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAV 671 Query: 6849 --GQIVIHAEAVDAQGNVDVADADVTVTLDVTPPDITTTVLAIDPVTADNILDATEAGGS 6906 GQ I +G+ V++ +VT T + +T + + T Sbjct: 672 ANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSL 731 Query: 6907 VT--LTGTLTNIPTDAVTTGVVVTVNGIDYTATVDAVAGT 6944 V+ ++ ++ V +T++ + V G Sbjct: 732 VSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGK 771 Score = 40.4 bits (94), Expect = 4e-04 Identities = 76/397 (19%), Positives = 123/397 (30%), Gaps = 73/397 (18%) Query: 1713 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDMLTNDSTPALTGTVNDPTA-TVVVNV 1771 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 1772 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 1824 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 1825 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSW--SVPN 1876 A +D A+ D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 1877 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 1927 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 1928 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPVLADGPHTITVTATDAAGNA 1986 + V TV + + A NG TW A+ + + DA Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA------------IASVDA---- 807 Query: 1987 GTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSWSV 2046 + VT+ + +T++V D TAT T S V Sbjct: 808 --SSGQVTLK---------------------EKGTTTISVISSDNQTATYTIATPNSLIV 844 Query: 2047 PNPGNLVDGDTVTATATDPAGNTS--LPGTGTVSADI 2081 PN A + N LP + ++ Sbjct: 845 PNMSK----RVTYNDAVNTCKNFGGKLPSSQNELENV 877 Score = 39.3 bits (91), Expect = 8e-04 Identities = 70/374 (18%), Positives = 113/374 (30%), Gaps = 49/374 (13%) Query: 2121 PAVNNGDGTWTLADNTLPTLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPI 2180 V + G + ADG IT TAT N V VL Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTAT-VKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 2181 NATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGTWSVPNPGNLVDGDTVTATATDPAGN 2240 +A SG A TVT+ V A T S N ++ D A+ T+ + Sbjct: 611 SANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKAD 666 Query: 2241 TSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGDG 2300 + A V D ++ T T+ + + + +G Sbjct: 667 KTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNS----------TEKTDTNG 716 Query: 2301 TWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSG 2360 + + + P V+A + D ++ +D N + G Sbjct: 717 YA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT--LTIDDGNIE--IVG 765 Query: 2361 TAEAGSTVTVTYPDGTTATVVAGTDG--TWSVPNPGNLVDGDTVTATATDPAGNTSLPGT 2418 T G TV G +G +G TW NP A+ +G +L Sbjct: 766 TGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDASSGQVTLKEK 817 Query: 2419 GTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNV--DGTDYPAVNNGDGTWTL 2476 GT + + ++D+ A T T+ P + +V N+ T AVN Sbjct: 818 GTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGK 866 Query: 2477 ADNTLPVLADGPHT 2490 ++ L + Sbjct: 867 LPSSQNELENVFKA 880 Score = 39.3 bits (91), Expect = 8e-04 Identities = 77/363 (21%), Positives = 120/363 (33%), Gaps = 64/363 (17%) Query: 4033 ADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTY 4092 + +T A D GN+ ++ ++TI T N V+D + TD + A + Sbjct: 521 GSNVYKVTARAYDRNGNS-SNNVLLTI-TVLSNGQVVDQVGVTDFTADKTSAKA------ 572 Query: 4093 PDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATA--------TDPAG------NTSLPGT 4138 DGT A T V V + V+ TA T+ +G + PG Sbjct: 573 -DGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQ 631 Query: 4139 GTVSADITAPVVALDD---VLTNDSTPALTGTVNDPTATVVVNVDGTDY-PAVNNGDGTW 4194 VSA AL+ + + + ++T D T V D Y V GD Sbjct: 632 VVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPV 691 Query: 4195 TLADNTLPALADGPHTITVTATDAAGN-----VGNDTAVVTIDTSVPVVSLDDL---TTN 4246 + + T G + + TD G + V V++D Sbjct: 692 SNQEVTFTT-TLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEF 750 Query: 4247 DTTPALTG--------AIDDPTATVVVNVDGIDYPAT-NNGDGTWTLADNTLPALID--- 4294 TT + + TV + ++ A+ NG TW A+ + A +D Sbjct: 751 FTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAI-ASVDASS 809 Query: 4295 --------GPHTVTVTATDPAGNTATDTATLTIDTVPADLIGAITIPEDLNGDGILNADE 4346 G T++V ++D TAT TI T P LI D + Sbjct: 810 GQVTLKEKGTTTISVISSD------NQTATYTIAT-PNSLIVPNMSKRVTYNDAVNTCKN 862 Query: 4347 LGT 4349 G Sbjct: 863 FGG 865 Score = 38.9 bits (90), Expect = 0.001 Identities = 71/374 (18%), Positives = 119/374 (31%), Gaps = 49/374 (13%) Query: 2465 PAVNNGDGTWTLADNTLPVLADGPHTITVTATDAAGNVGNDTAVVTIDTVAPNAPVLDPI 2524 V + G + ADG IT TAT V V+ + V+ A VL Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTA-VLSAN 610 Query: 2525 NATDPVSGQAEPGSTVTVTYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATATDPAGN 2584 +A SG+A TVT+ V A T S N ++ D A+ T+ + Sbjct: 611 SANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKAD 666 Query: 2585 TSLPGTGTVSADITAPVVALDDMLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGDG 2644 + A V D ++ T T+ + + + +G Sbjct: 667 KTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNS----------TEKTDTNG 716 Query: 2645 TWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSG 2704 + + + P V+A + D ++ +D N + G Sbjct: 717 YA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT--LTIDDGNIE--IVG 765 Query: 2705 TAEAGSTVTVTYPDGTTATVVAGTDG--SWSVPNPGNLVDGDTVTATATDPAGNTSLPGT 2762 T G TV G +G +G +W NP A+ +G +L Sbjct: 766 TGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDASSGQVTLKEK 817 Query: 2763 GTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNV--DGTDYPAVNNGDGTWTL 2820 GT + + ++D+ A T T+ P + +V N+ T AVN Sbjct: 818 GTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGK 866 Query: 2821 ADNTLPVLADGPHT 2834 ++ L + Sbjct: 867 LPSSQNELENVFKA 880 Score = 38.9 bits (90), Expect = 0.001 Identities = 76/397 (19%), Positives = 123/397 (30%), Gaps = 73/397 (18%) Query: 1541 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 1599 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 1600 DGTDYPAVNNG------DGTWTLADNTLPVLADGPHTITVTATDAAGNAGT-DTAVVTID 1652 N GT L+ N+ G T+T+ + + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 1653 TTAPNAPVLDPINAT------DPVSGTAEAGSTVTVTYPDGTTATVVAGPDGSW--SVPN 1704 A +D A+ D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 1705 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDMLTNDSTPA-- 1755 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 1756 LTGTVNDPTATVVVNVDGTDYPAV-NNGDGTWTLADNTLPVLADGPHTITVTATDAAGNA 1814 + V TV + + A NG TW A+ + + DA Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA------------IASVDA---- 807 Query: 1815 GTDTAVVTIDTTAPNAPVLDPINATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSWSV 1874 + VT+ + +T++V D TAT T S V Sbjct: 808 --SSGQVTLK---------------------EKGTTTISVISSDNQTATYTIATPNSLIV 844 Query: 1875 PNPGNLVDGDTVTATATDPAGNTS--LPGTGTVSADI 1909 PN A + N LP + ++ Sbjct: 845 PNMSK----RVTYNDAVNTCKNFGGKLPSSQNELENV 877 Score = 38.5 bits (89), Expect = 0.001 Identities = 73/375 (19%), Positives = 118/375 (31%), Gaps = 51/375 (13%) Query: 1261 PAVNNGDGTWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPI 1320 V + G + ADG IT TAT N V VL Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTAT-VKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 1321 NATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATATD-PAG 1379 +A SG A TVT+ V A T S N ++ D A+ T+ A Sbjct: 611 SANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKAD 666 Query: 1380 NTSLPGTGTVSADITPPVVALDDVLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGD 1439 T+ G + T V+ D ++N T T+ + + + + Sbjct: 667 KTTAVANGQDAITYTVKVMKGDKPVSNQEV-TFTTTLGKLSNS----------TEKTDTN 715 Query: 1440 GTWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVS 1499 G + + + P V+A + D ++ +D N + Sbjct: 716 GYA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT--LTIDDGNIE--IV 764 Query: 1500 GTAEAGSTVTVTYPDGTTATVVAGTDG--SWSVPNPGNLVDGDTVTATATDPAGNTSLPG 1557 GT G TV G +G +G +W NP A+ +G +L Sbjct: 765 GTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDASSGQVTLKE 816 Query: 1558 TGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNV--DGTDYPAVNNGDGTWT 1615 GT + + ++D+ A T T+ P + +V N+ T AVN Sbjct: 817 KGTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGG 865 Query: 1616 LADNTLPVLADGPHT 1630 ++ L + Sbjct: 866 KLPSSQNELENVFKA 880 Score = 38.5 bits (89), Expect = 0.001 Identities = 73/375 (19%), Positives = 118/375 (31%), Gaps = 51/375 (13%) Query: 3669 PAVNNGDGTWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPI 3728 V + G + ADG IT TAT N V VL Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTAT-VKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 3729 NATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATATD-PAG 3787 +A SG A TVT+ V A T S N ++ D A+ T+ A Sbjct: 611 SANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKAD 666 Query: 3788 NTSLPGTGTVSADITPPVVALDDVLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGD 3847 T+ G + T V+ D ++N T T+ + + + + Sbjct: 667 KTTAVANGQDAITYTVKVMKGDKPVSNQEV-TFTTTLGKLSNS----------TEKTDTN 715 Query: 3848 GTWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVS 3907 G + + + P V+A + D ++ +D N + Sbjct: 716 GYA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT--LTIDDGNIE--IV 764 Query: 3908 GTAEAGSTVTVTYPDGTTATVVAGTDG--SWSVPNPGNLVDGDTVTATATDPAGNTSLPG 3965 GT G TV G +G +G +W NP A+ +G +L Sbjct: 765 GTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDASSGQVTLKE 816 Query: 3966 TGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNV--DGTDYPAVNNGDGTWT 4023 GT + + ++D+ A T T+ P + +V N+ T AVN Sbjct: 817 KGTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGG 865 Query: 4024 LADNTLPVLADGPHT 4038 ++ L + Sbjct: 866 KLPSSQNELENVFKA 880 Score = 38.5 bits (89), Expect = 0.001 Identities = 69/374 (18%), Positives = 113/374 (30%), Gaps = 49/374 (13%) Query: 3325 PAVNNGDGTWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPI 3384 V + G + ADG IT TAT N V VL Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTAT-VKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 3385 NATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATATDPAGN 3444 +A SG A TVT+ V A T S N ++ D A+ T+ + Sbjct: 611 SANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKAD 666 Query: 3445 TSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGDG 3504 + A V D ++ T T+ + + + +G Sbjct: 667 KTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNS----------TEKTDTNG 716 Query: 3505 TWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSG 3564 + + + P V+A + D ++ +D N + G Sbjct: 717 YA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT--LTIDDGNIE--IVG 765 Query: 3565 TAEAGSTVTVTYPDGTTATVVAGTDG--SWSVPNPGNLVDGDTVTATATDPAGNTSLPGT 3622 T G TV G +G +G +W NP A+ +G +L Sbjct: 766 TGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDASSGQVTLKEK 817 Query: 3623 GTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNV--DGTDYPAVNNGDGTWTL 3680 GT + + ++D+ A T T+ P + +V N+ T AVN Sbjct: 818 GTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGK 866 Query: 3681 ADNTLPVLADGPHT 3694 ++ L + Sbjct: 867 LPSSQNELENVFKA 880 Score = 38.5 bits (89), Expect = 0.001 Identities = 69/374 (18%), Positives = 113/374 (30%), Gaps = 49/374 (13%) Query: 2981 PAVNNGDGTWTLADNTLPTLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPI 3040 V + G + ADG IT TAT N V VL Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTAT-VKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 3041 NATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGTWSVPNPGNLVDGDTVTATATDPAGN 3100 +A SG A TVT+ V A T S N ++ D A+ T+ + Sbjct: 611 SANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKAD 666 Query: 3101 TSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGDG 3160 + A V D ++ T T+ + + + +G Sbjct: 667 KTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNS----------TEKTDTNG 716 Query: 3161 TWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSG 3220 + + + P V+A + D ++ +D N + G Sbjct: 717 YA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT--LTIDDGNIE--IVG 765 Query: 3221 TAEAGSTVTVTYPDGTTATVVAGTDG--SWSVPNPGNLVDGDTVTATATDPAGNTSLPGT 3278 T G TV G +G +G +W NP A+ +G +L Sbjct: 766 TGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDASSGQVTLKEK 817 Query: 3279 GTVSADITAPVVALDDMLTNDSTPALTGTVNDPTATVVVNV--DGTDYPAVNNGDGTWTL 3336 GT + + ++D+ A T T+ P + +V N+ T AVN Sbjct: 818 GTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGK 866 Query: 3337 ADNTLPVLADGPHT 3350 ++ L + Sbjct: 867 LPSSQNELENVFKA 880 Score = 38.1 bits (88), Expect = 0.002 Identities = 64/342 (18%), Positives = 105/342 (30%), Gaps = 47/342 (13%) Query: 1777 PAVNNGDGTWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPI 1836 V + G + ADG IT TAT N V VL Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTAT-VKKNGVAQANVPVSFNIVSGTAVLSAN 610 Query: 1837 NATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATATDPAGN 1896 +A SG A TVT+ V A T S N ++ D A+ T+ + Sbjct: 611 SANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKAD 666 Query: 1897 TSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGDG 1956 + A V D ++ T T+ + + + +G Sbjct: 667 KTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNS----------TEKTDTNG 716 Query: 1957 TWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPINATDPVSG 2016 + + + P V+A + D ++ +D N + G Sbjct: 717 YA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT--LTIDDGNIE--IVG 765 Query: 2017 TAEAGSTVTVTYPDGTTATVVAGTDG--SWSVPNPGNLVDGDTVTATATDPAGNTSLPGT 2074 T G TV G +G +G +W NP A+ +G +L Sbjct: 766 TGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDASSGQVTLKEK 817 Query: 2075 GTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNVD 2116 GT + + ++D+ A T T+ P + +V N+ Sbjct: 818 GTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMS 848 Score = 38.1 bits (88), Expect = 0.002 Identities = 77/383 (20%), Positives = 118/383 (30%), Gaps = 67/383 (17%) Query: 2809 PAVNNGDGTWTLADNTLPVLADGPHTITVTATDAAGNAGTDTAVVTIDTTAPNAPVLDPI 2868 V + G + ADG IT TAT V N PV I Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTAT-----------VKKNGVAQANVPVSFNI 600 Query: 2869 NATDPVSGTAEAGSTVTVTYPDGT-TATVVAGTDGSWSVPNPGNLVDGDTVTATATDPAG 2927 VSGTA + T G T T+ + G V TA T Sbjct: 601 -----VSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAK---------TAEMTSALN 646 Query: 2928 NTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNVDGTDYPAVNNGD 2987 ++ A IT + A + A+T TV V+ + Sbjct: 647 ANAVIFVDQTKASITE-IKADKTTAVANGQDAITYTVKVMKGDKPVS--NQEVTFTTTLG 703 Query: 2988 GTWTLADNTLPTLADGPHTITVTATDAA--------GNAGTDTAVVTIDTTAPNAPVLDP 3039 L+++T T +G +T+T+T + D ++ +D Sbjct: 704 ---KLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTT--LTIDD 758 Query: 3040 INATDPVSGTAEAGSTVTVTYPDGTTATVVAGTDG--TWSVPNPGNLVDGDTVTATATDP 3097 N + GT G TV G +G +G TW NP A+ Sbjct: 759 GNIE--IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA--------IASVDAS 808 Query: 3098 AGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNV--DGTDYPAV 3155 +G +L GT + + ++D+ A T T+ P + +V N+ T AV Sbjct: 809 SGQVTLKEKGTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMSKRVTYNDAV 857 Query: 3156 NNGDGTWTLADNTLPVLADGPHT 3178 N ++ L + Sbjct: 858 NTCKNFGGKLPSSQNELENVFKA 880 Score = 35.8 bits (82), Expect = 0.009 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 26/240 (10%) Query: 6522 GQIVIHAEAVDAQGNVDVADADVTLTID---TTPQDLITAITIPED---LNGDGILNAAE 6575 GQ+V D + A AD T I T ++ + +P ++G +L+A Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANS 611 Query: 6576 LGTDGTFNAQVALGPDAIDGTVVNV---NGTNYTVTAADLANGYITATLDATAADPVT-- 6630 T+G+ A V L D VV+ T+ A + A++ AD T Sbjct: 612 ANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAV 671 Query: 6631 --GQIVIHAEAVDEQGNVDVADADVTL---------TIDTTPQDLITAITIPEDLNGDGI 6679 GQ I +G+ V++ +VT + + T + +T+ G + Sbjct: 672 ANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSL 731 Query: 6680 LNAAELGTDGTFNAQVAL---GPDAIDGTVVNVNGTNYTVTAADLANGYITATLDATAAD 6736 + +A + + ID + + GT + Y L A+ + Sbjct: 732 V-SARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN 790 Score = 35.4 bits (81), Expect = 0.013 Identities = 47/250 (18%), Positives = 80/250 (32%), Gaps = 26/250 (10%) Query: 6294 ITAAIPVTGEGPVAIHAEAVDAQRNVDVADAD------VTVTVDTVPADLIGAITIPEDL 6347 + I V G V D + A AD T TV + Sbjct: 542 VLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIV 601 Query: 6348 NGDGILNADELGTDGSFNAQVALGPDALDGTVVNV---NGTNYTVTAADLANGYITATLD 6404 +G +L+A+ T+GS A V L D VV+ T+ A + A++ Sbjct: 602 SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASIT 661 Query: 6405 ATAADPVT----GQIVIHAEAVDAQGNVDVADADVTL---------TIDTTPQDLITAIT 6451 AD T GQ I +G+ V++ +VT + + T + +T Sbjct: 662 EIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVT 721 Query: 6452 VPEDLNGDGILNAAELGTDGTFNAQVAL---GPDAIDGTVVNVNGTNYTVTAADLANGYI 6508 + G ++ +A + + ID + + GT + Y Sbjct: 722 LTSTTPGKSLV-SARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYG 780 Query: 6509 TATLDATAAD 6518 L A+ + Sbjct: 781 QVNLKASGGN 790 Score = 34.3 bits (78), Expect = 0.024 Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 24/237 (10%) Query: 6090 GQIVIHAEAVDAQGNVDVADADVTLTID---TTPQDLITAITIPED---LNGDGILNAAE 6143 GQ+V D + A AD T I T ++ + +P ++G +L+A Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANS 611 Query: 6144 LGTDGTFNAQVALGPDAIDGTVVNV---NGTNYTVTAADLANGYITATLDATAADPVT-- 6198 T+G+ A V L D VV+ T+ A + A++ AD T Sbjct: 612 ANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAV 671 Query: 6199 --GQIVIHAEAVDEQGNVDVADADVTL---------TIDTTPQDLITAITIPEDLNGDGI 6247 GQ I +G+ V++ +VT + + T + +T+ G + Sbjct: 672 ANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSL 731 Query: 6248 LNADELGTDGSFNAQVA--LGPDALDGTVVNVNGVNYTVTAADLANGYITAAIPVTG 6302 ++A A +D + + G + Y + +G Sbjct: 732 VSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASG 788
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.7 bits (113), Expect = 6e-09 Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 47 VVNKAIDLFHHRGFHLIGVDRIVKESQITKATFYNYFHSKERLIEICLMVQKEKLQEQVV 106 +++ A+ LF +G + I K + +T+ Y +F K L + + + E + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 107 AMVEYDLSTSA 117 Sbjct: 76 EYQAKFPGDPL 86
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 2e-20 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 2/185 (1%) Query: 25 VLITGASSGIGSVYADRFAQRGYHLILVARDTNRLDKISKDLQEKYGVQVEFIQADLSND 84 ITGA+ GIG A A +G H+ V + +L+K+ L+ + E AD+ + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVRDS 69 Query: 85 QDIRKI-EDVLKNDADIEILVNNAGIALNGNFLTQDRNEIEKLLTLNMTAVVRLSHAMSQ 143 I +I + + I+ILVN AG+ G + E E ++N T V S ++S+ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 144 SLIRKGKGAIINLGSVLGLAPEFGSTIYGASKSFIQFFSQGLHLELKDHGVHVQAVLPSA 203 ++ + G+I+ +GS P Y +SK+ F++ L LEL ++ + V P + Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 204 TKTEI 208 T+T++ Sbjct: 190 TETDM 194
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 6e-12 Identities = 19/76 (25%), Positives = 35/76 (46%) Query: 13 MKVSKTQVKENRDKIVEKATQLFRSKGYDGVGIAELMSSAGFTHGGFYKHFSSKTDLVTI 72 + +K + +E R I++ A +LF +G + E+ +AG T G Y HF K+DL + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 73 TAKYGLEQVLKRIEGL 88 + + + Sbjct: 62 IWELSESNIGELELEY 77
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 110 bits (277), Expect = 2e-31 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 81 VHFDYDSSDLSTEDYQTLQAHAQFL--MANANSKVALTGHTDERGTREYNMALGERRAKA 138 V F+++ + L E L L + + V + G+TD G+ YN L ERRA++ Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 139 VQNYLITSGVNPQQLEAVSYGKEAPV---------NPGHDESAWKENRRVEINYEAV 186 V +YLI+ G+ ++ A G+ PV +RRVEI + + Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 6/145 (4%) Query: 27 RSVGRKATITKEELFQAALNLIGPQKSIASLSLREVAREAGIAPNSFYRHFKDIDELAIS 86 R ++A T++ + AL L Q+ ++S SL E+A+ AG+ + Y HFKD +L Sbjct: 3 RKTKQEAQETRQHILDVALRLFS-QQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 87 LIDRAGIVLRKIIRQ-ARLRASLQDSIIRSSVEIFLQQL---DADEGNLSLLLREG-FTG 141 + + + + ++ + S++R + L+ + + ++ + F G Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 142 SASYKAAVDRQLNFFQQELQEDLIR 166 + R L + E ++ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLK 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 4e-12 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Query: 8 LERLYPGRRAALKRQILLDALDCFLEQGIETTSIEMIRAKSESSVGAIYHHFKNKEGIVA 67 + R ++ IL AL F +QG+ +TS+ I + + GAIY HFK+K + + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 68 ALFFSALDD-QTALRDEYLKQSKTLKDVVEALIYSYVDWVSEQPE 111 ++ + + + K V+ ++ ++ + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEER 105
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.7 bits (165), Expect = 2e-16 Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 14/169 (8%) Query: 13 ILHTSRYLFDQHGFHNVGVDRISKESNVSKMTFYKYFKSKEKLIELCLEFHQETLQHQVS 72 IL + LF Q G + + I+K + V++ Y +FK K L E + + ++ Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG-ELE 74 Query: 73 SILSANSESQNLDKLKKIY--FLHADLK-SHYHLIFKAIFEIEKMYPQA---HRVVIKYR 126 A L L++I L + + L+ + IF + + + Sbjct: 75 LEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLC 134 Query: 127 EWLINTILEILLN------IKSSTSIEEARLFIY-IIDSSIIQSLINDQ 168 + I + L + + + A + + I + L Q Sbjct: 135 LESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 25.5 bits (56), Expect = 0.027 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 5/27 (18%) Query: 34 KYSIENYHKFVTTNIKGQITGWNLNLL 60 +YS+EN H + +N+ G LN+L Sbjct: 89 RYSLENPHAYADSNLTG-----FLNIL 110
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.0 bits (62), Expect = 0.022 Identities = 8/13 (61%), Positives = 11/13 (84%) Query: 78 DSWQKQHGKDYFE 90 W+K+HGK+YFE Sbjct: 430 AEWEKKHGKNYFE 442
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 28.6 bits (64), Expect = 0.033 Identities = 13/70 (18%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Query: 195 DTSPEAVQKLVVAFEQFNVTKKDIEDYIQRRL-DAI-TAANIVALRKIF-----TSLRDG 247 ++SP + + A E + + ++ + + D + T+A+ AL ++ T+++DG Sbjct: 262 NSSPVELMDYIQALED-ALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDG 320 Query: 248 MSSPKDWFKN 257 + + +W+++ Sbjct: 321 VKNFVNWYRD 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.006 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 14/112 (12%) Query: 22 HNTKEIIMGGF-------QGCPQCAIEYVAKANQEHEFEVQKAVREKHFAGAMLPERHKN 74 + ++M + + A +Y+ K F++ + + A A R Sbjct: 74 PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP-----FDLTELIGIIGRALAEPKRRPSK 128 Query: 75 A-GFRNYNTPLSGQKNALTQTANFAKKIVKGEVENLVMVGSTGTGKTHLACA 125 PL G+ A+ + ++++ ++ ++ G +GTGK +A A Sbjct: 129 LEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT-GESGTGKELVARA 179
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 31.9 bits (72), Expect = 0.007 Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 499 QDQIDAIRKQRQEAQQQAAQQEQEQALAQPLANA 532 Q ++ + + + QQ QQ+Q QA AQ A Sbjct: 329 QIHLNFVMPPQAQQQQGQGQQQQAQATAQEAVAA 362
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 2e-20 Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 9/257 (3%) Query: 5 LQNKIAVVSGSTSGIGLGIAKGLASAGATVVVV---GRKQAGVDEAIAHIRQSVPEASLR 61 ++ KIA ++G+ GIG +A+ LAS GA + V K V ++ + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 62 GVDADLTTEQGAAALFAAEPKADILVNNLGIFNDEDFFSVPDEEWMRFYQVNVLSGVRLA 121 D+ E A P DILVN G+ S+ DEEW + VN + Sbjct: 66 VRDSAAIDEITARIEREMGP-IDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 122 RHYAPSMVEQGWGRIIFISSESGVAIPGDMINYGVTKSANLAVSHGLAKRLAGTGVTVNA 181 R + M+++ G I+ + S M Y +K+A + + L LA + N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 VLPGPTFTDGLENMLADAAAKAGRSTRDQADEFVKVLRPSSIIQRAAEVDEVANMVVYIA 241 V PG T TD ++ AD + + F + +++ A+ ++A+ V+++ Sbjct: 185 VSPGSTETDMQWSLWADENGAEQV-IKGSLETF----KTGIPLKKLAKPSDIADAVLFLV 239 Query: 242 SPLSSATSGAALRVDGG 258 S + + L VDGG Sbjct: 240 SGQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 8e-14 Identities = 13/73 (17%), Positives = 30/73 (41%) Query: 17 TTLKGRERIKQILRNAEIVFLTKGYSGFSMRGVATQSNISLSTLQHYFQNKDILLKALLN 76 T + +E + IL A +F +G S S+ +A + ++ + +F++K L + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 77 KLICDYIQRIEIL 89 + + Sbjct: 65 LSESNIGELELEY 77
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 388 bits (998), Expect = e-124 Identities = 138/755 (18%), Positives = 267/755 (35%), Gaps = 79/755 (10%) Query: 120 LDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPEVAQSGI-GLLNNYDF--YT 176 + D + + Q L P A+M + G + PE+ GI L NY+F + Sbjct: 139 TSMIHDATAQLDVGQQRLNLTIPQAFMSNRARG---YIPPELWDPGINAGLLNYNFSGNS 195 Query: 177 YRPYQGGSTSSLFTEQRFFSPLGV--IKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQ 234 + GG++ + + +G ++++ + N ++ S + ++ +T + Sbjct: 196 VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNS----SDSSSGSKNKWQHINTWLE 251 Query: 235 FDNQKNATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPS 294 D + LGD T + + G Q+ + + PD P G A + Sbjct: 252 RDIIPLRSRLTLGDGYTQG-DIF-DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTA 309 Query: 295 TVDLIINGQKTSSTEVQSGPFILNNVPFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLL 354 V + NG ++ V GPF +N++ G+ V +A G +VP+ L Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369 Query: 355 KPGLFDYSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEGRTELSSDLQLLGAG 414 + G YS++ G+ R + + +G+ T+ G T+L+ + G Sbjct: 370 REGHTRYSITAGEYRSGNAQQ---EKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFG 426 Query: 415 SVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSIN------- 467 + LG LS TQ+ + +G Y+ + N G +I Sbjct: 427 IGKNMGALGALSVDMTQANSTL----PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYS 482 Query: 468 -------HNQRDDEYTDLSRLQYSNLISVNSNKSLTANTYFATKNS---------GTFGI 511 + + +I V + N + + G Sbjct: 483 TSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTST 542 Query: 512 GYINTKANDFKN-----RFLNLSWAPVLPTYMNGVTVSLSA--NRDFIEKEWSAAFQL-- 562 Y++ + T + +LS ++ +K L Sbjct: 543 LYLSGSHQTYWGTSNVDEQFQAGLN----TAFEDINWTLSYSLTKNAWQKGRDQMLALNV 598 Query: 563 SIPL----------FQRNATVNSGYAFNKQGDTGY-LNFNRSVPSEGGFGVDL----TRR 607 +IP R+A+ + + + G ++ + + Sbjct: 599 NIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGG 658 Query: 608 FNENSEDLNQARVNYRNSYINTDFGLSGNHDY-NYWFGLSGSLIYMAGDLFASNRLGESF 666 + NS A +NYR Y N + G S + D ++G+SG ++ A + L ++ Sbjct: 659 GDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTV 718 Query: 667 ALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFTITQVEQ 726 L+ D + EN R++ +G+ +P T Y + ++D L N + Sbjct: 719 VLVKAPGAKD--AKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVA 776 Query: 727 RIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVV-HRADQESSYVGMDGIVYLE 785 + RG+ V +F I + LT + KP+P G++V + Q S V +G VYL Sbjct: 777 NVVPTRGAIVRAEFKARVGIKLLMTLTH-NNKPLPFGAMVTSESSQSSGIVADNGQVYLS 835 Query: 786 NLKPNNTVTVQ--RSDQSICKADFSVDVEQAKQQI 818 + V V+ + + C A++ + E +Q + Sbjct: 836 GMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLL 870
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.0 bits (135), Expect = 1e-10 Identities = 70/391 (17%), Positives = 136/391 (34%), Gaps = 32/391 (8%) Query: 15 SLFLAIFSLAVGGFCIGTTEFVAMGLIQEIAHNLKITVPEAGHFISAYALGVVIGAPIIA 74 L + + ++A+ IG V GL++++ H+ + G ++ YAL AP++ Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDV-TAHYGILLALYALMQFACAPVLG 64 Query: 75 ILGAKVPRKTLLLCLMLFYGIANACTALAHTPETVLVSRFIAGLPHGAYFGVGALVAAEL 134 L + R+ +LL + + A A A + + R +AG+ GA V A++ Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADI 123 Query: 135 AGPSRRASAVAQMMMGLTVATVIGVPLATWLGQHFGWRAGFEFSATIAFFTLIAVACFVP 194 RA M V G L +G F A F +A + + +P Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 195 NIPVQATAS-----IKTELAGLKNINMWLTLAVGAIGFGGMFSVYSYVSPILTEYT--KV 247 + LA + +A F M V + + + + Sbjct: 183 E-SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 248 NIQIVPIALALWGIGMVIGGLAAGWLADKNL-----NKTIVGVLISSAIAFVVASFLMSN 302 + I ++L G ++ LA + + ++ +I+ +++ +F Sbjct: 242 HWDATTIGISLAAFG-ILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATR- 299 Query: 303 IYSAIGSLFLIGLTVMGLGG----ALQTRL-MDVAGDAQTLAASLNHSAFNLANALGAFL 357 G + + ++ GG ALQ L V + Q + +L + +G L Sbjct: 300 -----GWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLL 354 Query: 358 GGWVLSHQMGWIAPIWVGFVLSLGGLIILLI 388 + + W G+ G + LL Sbjct: 355 FTAIYAAS----ITTWNGWAWIAGAALYLLC 381
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 289 bits (742), Expect = 2e-87 Identities = 152/800 (19%), Positives = 275/800 (34%), Gaps = 78/800 (9%) Query: 62 LNISINSNP--SED--LVAVRQDQDKKLYIRTRDLKTLRLKMDDSISDSQW------ICL 111 ++I +N+ + D +Q + L ++ L + Sbjct: 80 VDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLT 139 Query: 112 NELKDIRFKYLENEQSLNLQVPPHMMTGYSVDLKGQQITSPQLLKIKPLNAAILNYSLY- 170 + + D + +Q LNL +P M+ + P L +NA +LNY+ Sbjct: 140 SMIHDATAQLDVGQQRLNLTIPQAFMS------NRARGYIPPELWDPGINAGLLNYNFSG 193 Query: 171 HTITNDENVFSSSAEGIFNSAIGNFSSGVL-------YNGNDENSYSHEKWVRLESKWQY 223 +++ N S A S + N + L YN +D +S S KW + + + Sbjct: 194 NSVQNRIGGNSHYAYLNLQSGL-NIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLER 252 Query: 224 VDPEKIRIYTLGDFISNSSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTL 283 TLGD + + + G Q +S D P G A + + Sbjct: 253 DIIPLRSRLTLGDGYTQGDIF-DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQV 311 Query: 284 DLYVNQQKIYSGLVPSGPFDIKQLPFISG-NEVTLVTTDATGRQSITKKPYYFSSKILAK 342 + N IY+ VP GPF I + ++ + +A G I PY + + Sbjct: 312 TIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQRE 371 Query: 343 GINEFSVDVGVPRYNYGLYSNDYDDATFASGAIRYGYSNSLTLSGGVEASTDGLSNIGTG 402 G +S+ G R F + +G T+ GG + + D G Sbjct: 372 GHTRYSITAGEYRSGNAQQEKPR----FFQSTLLHGLPAGWTIYGGTQLA-DRYRAFNFG 426 Query: 403 FAKNLFGIGVINADIAASQYKDENGYSALLGLEGRISKNISFN--------TSYRKIFDN 454 KN+ +G ++ D+ + + S G R N S N YR Sbjct: 427 IGKNMGALGALSVDMTQANSTLPDD-SQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSG 485 Query: 455 YFDLARVSQVRY------LKDNQSDAESQNYLNYSALADEIFRAGINYNFYAG-YGA-YL 506 YF+ A + R +D + + Y+ ++ + + G YL Sbjct: 486 YFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYL 545 Query: 507 GYNQIKY-----SDNQYKLLSANLSGSLNK-NWGFYTSAYKD-YENHKDYGIYFAL---- 555 + Y D Q+ A L+ + NW S K+ ++ +D + + Sbjct: 546 SGSHQTYWGTSNVDEQF---QAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPF 602 Query: 556 -------RYTPSNKFNAITSVSSDS-GRLSYRQEIFGLSDPQIGSFGWG---GYVERDQD 604 + +A S+S D GR++ ++G + + + + GY Sbjct: 603 SHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYG-TLLEDNNLSYSVQTGYAGGGDG 661 Query: 605 NHDNNASIYASYRARAAYLAGRYNRIGDNDQVALSATGSLVAAAGRLFAANEIGDGYAVV 664 N + +YR Y+ D Q+ +G ++A A + + D +V Sbjct: 662 NSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLV 721 Query: 665 TNAGPQSQILNGGVNLGFTDKSGRFLIPSLMPYQENHIYLDPSFLPLNWSVNSTEQKTVV 724 G + + TD G ++P Y+EN + LD + L N +++ V Sbjct: 722 KAPGAKDAKVENQ-TGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780 Query: 725 GYRQGTMIDFGAHQVISGLVKLVDKNNSPLLPGYSVQ-INGQQDGVVGYDGEVFISNLLK 783 +F A I L+ + NN PL G V + Q G+V +G+V++S + Sbjct: 781 TRGAIVRAEFKARVGIKLLM-TLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPL 839 Query: 784 QNKLVVDLLDHGSCQVDFTY 803 K+ V + + Y Sbjct: 840 AGKVQVKWGEEENAHCVANY 859
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 31.2 bits (70), Expect = 0.003 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%) Query: 64 STRIARYLDETFPDTPRLYPEDANQKALAELWEDW 98 S+ +A Y D + + P + E+ K L LW W Sbjct: 67 SSLLAVYSDHIYRNQPMMIREN---KPLISLWAQW 98
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 55.8 bits (134), Expect = 3e-11 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 10/163 (6%) Query: 54 VGASQGIGAAVCHRFAKEGLKVYVAGRTFQKIEAVAAEIHANAGEAVAFRLDAEDINQVQ 113 GA+QGIG AV A +G + +K+E V + + A A A AF D D + Sbjct: 14 TGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAID 73 Query: 114 ALFDTIISQNERITAVIHNVGGNIPSIFLRSPL-SFFTQMWQSTF----LSAYLVSQSCL 168 + I + I ++ N+ + + S + W++TF + S+S Sbjct: 74 EITARIEREMGPIDILV-----NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 169 KIFKEQNHGTLIFTGASASLRGKPFFAAFTMGKSALRTYALNL 211 K ++ G+++ G++ + + AA+ K+A + L Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 27.1 bits (60), Expect = 0.050 Identities = 8/38 (21%), Positives = 14/38 (36%) Query: 32 ILDKNEQSPLYVYQAVHDSSVQNIQVNRVNDGITSVRL 69 N QSP + D V+ +V+ + + V Sbjct: 137 YKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYF 174
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 1e-10 Identities = 15/65 (23%), Positives = 23/65 (35%) Query: 5 EASFRALRVLHTARDLFKQYGFHKVGVDRIIAESKITKATFYNYFHSKERLIEMCLTFQK 64 EA +L A LF Q G + I + +T+ Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 DGLKE 69 + E Sbjct: 68 SNIGE 72
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 29.1 bits (65), Expect = 0.041 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 575 SLAVFHSTSDLGAVQSFSNGLALTRTKE---KVTGVEATFDYMDDANVWGTGGSVTWMKG 631 ++ F + + + A + + G A + + K+ G + Y +D + G GS T+ + Sbjct: 12 AVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEK 71 Query: 632 REKPQDG 638 G Sbjct: 72 SRTASSG 78
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 7e-06 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 17/87 (19%) Query: 52 VAVEDNTIVGHVAISPVQISSGEKNWYGLG---PISVTPNKQGQGIGSLLMNSSLEKLKK 108 + +N +G + I NW G I+V + + +G+G+ L++ ++E K+ Sbjct: 69 LYYLENNCIGRIKIR--------SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKE 120 Query: 109 SGAKGCVL------LGDPKYYSRFGFK 129 + G +L + +Y++ F Sbjct: 121 NHFCGLMLETQDINISACHFYAKHHFI 147
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 30.3 bits (68), Expect = 0.010 Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 27/158 (17%) Query: 224 PAIEAQYQFGKSGVNKFRPYLGVGLMYAHFNDIKLNDEIRSDLISA---------GHMIQ 274 P E Q G G + PY+G + Y + + + A G+ I Sbjct: 50 PTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPIT 109 Query: 275 NVLD--GKAGAALDRKESSGNMVVKVDADDAIAPIFTAGFTYDFNDSWYTVASVSYAKLN 332 + LD + G + R ++ N V + D ++P+F G Y T + Y N Sbjct: 110 DDLDIYTRLGGMVWRADTKSN-VYGKNHDTGVSPVFAGGVEYAITPEIAT--RLEYQWTN 166 Query: 333 NRTQIDVINQNTGARLIHGSTKVDIDPIITYLGVGYRF 370 N I ++ LGV YRF Sbjct: 167 NIGDAHTIGTRPDNGMLS-------------LGVSYRF 191
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.0 bits (65), Expect = 0.018 Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 148 SKATLLSGIYDLLPIQETHLNHALNLSQEDILKYSPI 184 K L + + + L ++ Q+D++ YSP+ Sbjct: 68 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 104
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 201 bits (514), Expect = 4e-64 Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 24/284 (8%) Query: 120 TTQSNPDWGLDRIDQKALPLNSAYSYLQTGSGTTAYIVDTGILSSHQEFSGRVLSGDTAI 179 + G++ I A+ + G G ++DTG + H + R++ G Sbjct: 17 QQVNEIPRGVEMIQAPAVWNQT------RGRGVKVAVLDTGCDADHPDLKARIIGGRNFT 70 Query: 180 SDGNG----TTDCNGHGTHVAGTVGGT-----TYGVAKNVNLVPIRILGCDGSGASSNVI 230 D G D NGHGTHVAGT+ T GVA +L+ I++L GSG +I Sbjct: 71 DDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWII 130 Query: 231 AGLDWILKNGKKPAVVNMSLGGATSSS-LDSAVENLFNNGYVMVVAAGNSNTDACS---- 285 G+ + ++ +++MSLGG L AV+ + +++ AAGN Sbjct: 131 QGIYYAIEQKVD--IISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDEL 188 Query: 286 SSPARVSKAITVAATDNTDTRASYSNYGSCVDIFAPGSQINSSWIGSNTATKILNGTSMA 345 P ++ I+V A + + +SN + VD+ APG I S+ G AT +GTSMA Sbjct: 189 GYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYAT--FSGTSMA 246 Query: 346 TPHVAGVVAEMLQSTPTASPQTISTNLLNQASSNVVKNPSGSPN 389 TPHVAG +A + Q + + ++ L SP Sbjct: 247 TPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPK 290
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.023 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 221 AEFMQKAINNSQLAKLE-ASHLSNIEQPQRFTQELTRFIQ 259 Q+ + + ++ SH + E P + + R Q Sbjct: 139 LTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQ 178
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 2e-07 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 5/179 (2%) Query: 33 IICFLIIFTDGIDTAAMGFIAPALAQDWGVDRSQ---LGPVMSAALGGMIIGALVSGPTA 89 I+ + D + + + P L +D G +++ A V G + Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 90 DRFGRKIVLAFSMLVFGGFTLASAYATNLDSLVVLRFLTGIGLGAAMPNATTLFSEYCPT 149 DRFGR+ VL S+ A A L L + R + GI GA A ++ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDG 126 Query: 150 RIRSLLVTCMFCGYNLGMATGGFISSWLIPTYGWHSLFLLGGWSPLILMILVILVLPES 208 R+ M + GM G + + + H+ F + + +LPES Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Score = 30.2 bits (68), Expect = 0.017 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 11/155 (7%) Query: 266 KGTVLLWVTYFMGLVVVYLLTSWLPTLMRETGASMERAAFIG---GLFQFGGVVSALFIG 322 + +++ T + V + L+ LP L+R+ S + A G L+ A +G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 323 WAMDKFNPNRVIAIFYFAAGLFAIAVGQSL-GNSTLLAVLVLCAGIA-INGAQSSMP-AL 379 D+F V+ + L AV ++ + L VL + +A I GA ++ A Sbjct: 65 ALSDRFGRRPVLLV-----SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAY 119 Query: 380 SARFYPTQCRATGVSWMTGIGRFGAVFGAWIGAVL 414 A RA +M+ FG V G +G ++ Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLM 154
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 43.1 bits (101), Expect = 3e-07 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 32/205 (15%) Query: 5 TSENIRDPKQDHLLTPENSAFIVIDYQPVQVNSIASMDRQL--LINNIVGTAKAAIVYNL 62 T+ ++ K + P + ++ D Q V++ + + L NI + + Sbjct: 13 TASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGI 72 Query: 63 PIIHSTVNVKTGLNKPPIPQLSKVLKDY-------------------PTYDRTSINSWED 103 P+++ T P +L D+ P D + W Sbjct: 73 PVVY------TAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRY 126 Query: 104 TEFK-----EAVKATGRRKLIMTALWTEACLTFPALDALAEGYEVYVVVDAVGGTSVAAH 158 + FK E ++ GR +LI+T ++ A +A E + + V DAV S+ H Sbjct: 127 SAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKH 186 Query: 159 EAALRRIEQAGGKMISVAQLFCELQ 183 + AL + L +LQ Sbjct: 187 QMALEYAAGRCAFTVMTDSLLDQLQ 211
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 2e-11 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 43 KTSSKKLQVIHTAIRLFVTYGFHTTGVDLIIKEAKITKATFYNYFHSKERLIEMCIAFQK 102 + + ++ A+RLF G +T + I K A +T+ Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 103 SLLKEEVLAIIYSSRYRTSKDKLKEII 129 S + E L + L+EI+ Sbjct: 68 SNIGELELEYQ-AKFPGDPLSVLREIL 93
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.7 bits (77), Expect = 0.001 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 275 LWMPQILKAFH-LTAMQTGLLNMIPFGLAAAFM-IVWGVHADKSGN-KSLNTAIPLFVTS 331 +P ++K H L+ + G + + P ++ + G+ D+ G LN + S Sbjct: 277 SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336 Query: 332 FGLLLTIFTSSLTLSLLLFSLVLMGNYAIKGPFWALVSERLPPTLVAVGIAAVNTIAHIG 391 F + ++ ++ VL G K +VS L G++ +N + + Sbjct: 337 FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLS 396 Query: 392 TGLMNSIMG 400 G +I+G Sbjct: 397 EGTGIAIVG 405
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 1/84 (1%) Query: 27 KNMQNLTLPTRALKVVNTSIELFHRRGFHIVGVDRLVKESEITKATFYNYFHSKERLIEI 86 + + TR +++ ++ LF ++G + + K + +T+ Y +F K L Sbjct: 3 RKTKQEAQETRQ-HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 87 CLMVQKERLQEKVIAMVEYDHDTS 110 + + + E + Sbjct: 62 IWELSESNIGELELEYQAKFPGDP 85
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.1 bits (96), Expect = 5e-07 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 6/108 (5%) Query: 66 LWIAIQEGKILGSVQLSLVSKKNGVHRAEVEKLMVLTTARKQGIATLLLNELENFSREKG 125 ++ E +G +++ N A +E + V RK+G+ T LL++ +++E Sbjct: 67 AFLYYLENNCIGRIKIR----SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 126 LRLLVLDTREGDVSEL-LYSKIGFVRVGVIPNFALSSNGNYDGTAIYY 172 L+L+T++ ++S Y+K F +G + S+ + AI++ Sbjct: 123 FCGLMLETQDINISACHFYAKHHF-IIGAVDTMLYSNFPTANEIAIFW 169
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 31.2 bits (70), Expect = 0.006 Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 5 LNDLHTFMVV--AQERSFTRAAAKLRTSQSAISQTLRNLEDRIGIKL--LSRTTRSVAPT 60 L+DL T +V ER +L++ S I +T R +ED + + ++ V+P Sbjct: 470 LSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYRVIEDYVKGREGDTKNSSTEVSPY 529 Query: 61 EAGEYLLNLLQPAIEEIENGINQISALKN 89 ++L++++P+++ I+ ++Q + + Sbjct: 530 HRSNFMLSIVEPSLQRIQKHLDQTHSFSD 558
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.8 bits (191), Expect = 6e-19 Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 2/206 (0%) Query: 1 MSKYKLKDKVVVITGSTGGLGLAIAQALQAKGAKLALLDLDLNKVESQAKQLGGQS-IAA 59 M+ ++ K+ ITG+ G+G A+A+ L ++GA +A +D + K+E L ++ A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 60 GWVADVRSLESLEMAMANAAQHFGKIDVVIANAGIATTEALEHMAPETFERTIDINLTGV 119 + ADVR +++ A + G ID+++ AG+ + ++ E +E T +N TGV Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 120 FRTFRAAIPYVK-QTQGYLLAVSSMAAFVHSPLNTHYTSSKAGVWALCDSLRLELKYLNI 178 F R+ Y+ + G ++ V S A V Y SSKA L LEL NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 179 GVGSLHPTFFKTPMMDSIQNDPAGKA 204 + P +T M S+ D G Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAE 206
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.6 bits (193), Expect = 3e-19 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 6/187 (3%) Query: 8 KVVLITGAAGGIGAATAREFYALGANLVLTDMQQEAVDKLASEFEASRVLP--LALDVTD 65 K+ ITGAA GIG A AR + GA++ D E ++K+ S +A DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 66 AVATKDVVQKTIKHFGHLDIAFANAGISWRDGASTMASCDEAEFDKIIEVDLLGVWRTVR 125 + A ++ + + G +DI AG+ R G S +E E V+ GV+ R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWE--ATFSVNSTGVFNASR 125 Query: 126 AALPEV-TRNKGQILITSSVYCFVNGMANAPYAASKAAVEMLGRCLRTEIAYTGATASVV 184 + + R G I+ S V + A YA+SKAA M +CL E+A ++V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 YPGWTAT 191 PG T T Sbjct: 186 SPGSTET 192
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 29.1 bits (65), Expect = 0.019 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Query: 306 SYQNDQYSATLGIAHQFTEKWSTSTDVSWDSGTGNPASTMGPIKGSWSLGLGVQFNPAKN 365 +Y+ + +++ G+ K+ T+ ++ T +S G G+QFNP +N Sbjct: 93 AYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTS---------DYGFSYGAGLQFNPMEN 143 Query: 366 YFITGSLKYFWLGDTKT 382 + S + + Sbjct: 144 VALDFSYEQSRIRSVDV 160
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 26.6 bits (58), Expect = 0.018 Identities = 12/32 (37%), Positives = 22/32 (68%) Query: 49 DKEQEELRKKAVELNKILIAKGQQPIRDSELV 80 +K E L+K+ VE ++I + KG++ ++ S LV Sbjct: 277 EKISESLKKEGVEKDRIDVLKGEKALKASGLV 308
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 760 bits (1963), Expect = 0.0 Identities = 256/852 (30%), Positives = 406/852 (47%), Gaps = 47/852 (5%) Query: 37 EAAASAPVEAEFDSAFLIGDAQ-KVDISRFKYGNPVLPGEYNVDVYVNGQWFGKRRMIFK 95 A + E F+ FL D Q D+SRF+ G + PG Y VD+Y+N + R + F Sbjct: 38 AQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFN 97 Query: 96 ALDPNQNAVTCFTGMNLLEYGVKQEILTKHAPLQKENNSCYKIEEWVENAFYEFDTSRLR 155 D Q V C T L G+ ++ L +++C + + +A + D + R Sbjct: 98 TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLA--DDACVPLTSMIHDATAQLDVGQQR 155 Query: 156 VDISIPQVALQKNAQGYVDPSVWDRGINAGFLSYSGSAYKTFNQSGDRSETTNAFMGVTA 215 ++++IPQ + A+GY+ P +WD GINAG L+Y+ S N+ G S A++ + + Sbjct: 156 LNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNS--HYAYLNLQS 213 Query: 216 GLNLAGWQLRHNGQWQWQDTPAENQSKSDYQETSTYLQRAFPKYRGVLTLGDSFTNGEVF 275 GLN+ W+LR N W + + + + SK+ +Q +T+L+R R LTLGD +T G++F Sbjct: 214 GLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIF 273 Query: 276 DSYGYRGIDFSSDDRMLPNSMLGYAPRIRGNAKTNAKVEVRQQGQLIYQTTVAPGNFEIN 335 D +RG +SDD MLP+S G+AP I G A+ A+V ++Q G IY +TV PG F IN Sbjct: 274 DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTIN 333 Query: 336 DLYPTGFGGEIEVSVIEANGEIQKFSVPYASVVQMLRPGMNRYSLTVGQFRDQDIDLD-P 394 D+Y G G+++V++ EA+G Q F+VPY+SV + R G RYS+T G++R + + P Sbjct: 334 DIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKP 393 Query: 395 WIIQGKYQQGINNYLTGYTGIQASENYAAILLGAAVAT-PIGAIAFDVTHSEAEFEKQAS 453 Q G+ T Y G Q ++ Y A G +GA++ D+T + + + Sbjct: 394 RFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQ 453 Query: 454 QSGQSFRLSYSKLITPTNTNLTLAAYRYSTENFYKLHDALLIRDLEEKGVNTYAAG---- 509 GQS R Y+K + + TN+ L YRYST ++ D R Sbjct: 454 HDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKP 513 Query: 510 ----------RQRSEFQITLNQGLPEGWGNFYVVGSWVDYWNRSESTKQYQIGYSNNYHG 559 +R + Q+T+ Q L Y+ GS YW S +Q+Q G + + Sbjct: 514 KFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFED 572 Query: 560 LTYGLSAINRKVEYGSNDASHDTEYLMTLSFPINFKKN----------SVNVNVTASEDS 609 + + LS K + D + ++ P + S + +++ + Sbjct: 573 INWTLSYSLTK---NAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNG 629 Query: 610 RT---VGASGMVG--DRFSYGASVSHQD----YANPTFNANGRYRTNYATVGGSYSIADS 660 R G G + + SY + + T A YR Y YS +D Sbjct: 630 RMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDD 689 Query: 661 YQQAMVSLSGSVVAHSDGILFGPEQGQTMVLVHAPDAAGAKVNNTVGLSVNKAGYAVVPY 720 +Q +SG V+AH++G+ G T+VLV AP A AKV N G+ + GYAV+PY Sbjct: 690 IKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPY 749 Query: 721 VTPYRLNDITLDPQEMSSEVELEETSQRIAPFAGAIAKVDFATKTGYAVYINSKTADGNS 780 T YR N + LD ++ V+L+ + P GAI + +F + G + + T + Sbjct: 750 ATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTL-THNNKP 808 Query: 781 LPFAAQVFNQKDEAVGIVAQGSMIYLRTPLAQDSLYVKWGDESNERCSVEYNISNQLRNK 840 LPF A V ++ ++ GIVA +YL + VKWG+E N C Y + + ++ Sbjct: 809 LPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPE--SQ 866 Query: 841 QQSIVMTEAVCK 852 QQ + A C+ Sbjct: 867 QQLLTQLSAECR 878
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 25.2 bits (55), Expect = 0.038 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 4/57 (7%) Query: 32 LQDDYNLIYASKGFCFKDQDAKEKYGNENCHTTKP----KFSDKEQQRLDAIKERQK 84 + D+ + A K N N H + + + + + QK Sbjct: 222 IFHDFVSVMAVSKEYSKYWKEIPYVNNVNPHMLQYLGNLPYDNSMFNYIKSTSPVQK 278
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 64.8 bits (158), Expect = 8e-14 Identities = 78/375 (20%), Positives = 125/375 (33%), Gaps = 51/375 (13%) Query: 1 MKKLLLAAAVATLSVNAVQAAPTLYGKLNVSINQVDNKNFDG-----KSDVTEVNSNSSR 55 MKK L+A +A L V A A TLYG + + + +G T + S+ Sbjct: 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59 Query: 56 IGVKGEEKLTDKLSAVYLAEWAISTDGSGSDTDLSARNRFIGLKTEGVGTLKVGKYDSYF 115 IG KG+E L + L A++ E S +G+D+ R FIGLK G G L+VG+ +S Sbjct: 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLKG-GFGKLRVGRLNSVL 116 Query: 116 KTSAGSNQDIFNDDTRLDITNIMYGENRLDNVVGFELDPKLLAGLTFNIMAQTGESTSDS 175 K G + L + I E RL + D AGL S S Sbjct: 117 K-DTGDINPWDSKSDYLGVNKIAEPEARL---ISVRYDSPEFAGL------------SGS 160 Query: 176 KKGETGKDSKNDSFDSVSTSLGYENKDLGLAIAAAGDFGIKGKYAAYGLKDVYTDAYRVT 235 + ++ + +S Y+N G + G + + + Y +R+ Sbjct: 161 VQYALNDNAGRHNSESYHAGFNYKNG--GFFVQYGGAYKRHHQVQENVNIEKY-QIHRLV 217 Query: 236 GSYDIAKSGFVVGALWQHAEPTDDLTAYGQTYKSDGSIDKAGKAYRGLEEEAYAVTAAYK 295 YD AL+ + Q + + V A Sbjct: 218 SGYD-------NDALY--------ASVAVQQQDAKLVEENYSHN------SQTEVAATLA 256 Query: 296 IPNTKLKVKAEYASAETQVSGQADRK--IDLYGLGLDYQINKQARFYGIVAQQKRDWLND 353 + + YA + D +G +Y +K+ + Sbjct: 257 YRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGES 316 Query: 354 DDKQTVVGTGIEYNF 368 T G G+ + F Sbjct: 317 KFVSTAGGVGLRHKF 331
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 27.3 bits (61), Expect = 0.013 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 139 IEQVAQQAQAPKEQVYGAIASVLPQVIDSLTPQGES 174 I +VA+ + K+ A+ +V V L +GE Sbjct: 8 IAKVAEATELTKKDSAAAVDAVFSAVSSYLA-KGEK 42
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.2 bits (62), Expect = 0.047 Identities = 14/32 (43%), Positives = 18/32 (56%) Query: 284 SSETAFSQAFKRVFDLSPKQYRQNYIGTNLDE 315 SS+ FSQ FK +L+ K N+I NL E Sbjct: 205 SSDLLFSQKFKEKLELNNKSIDINFIKENLTE 236
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 121 bits (305), Expect = 7e-40 Identities = 49/88 (55%), Positives = 68/88 (77%) Query: 2 NKSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTGR 61 NK +LI +AE ++K D+ A+DA ++++ L KG+ V L+GFG F V+ERAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGEELQIKATKVPSFKAGKGLKDSV 89 NP+TGEE++IKA+KVP+FKAGK LKD+V Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 71.9 bits (176), Expect = 3e-17 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 9/182 (4%) Query: 49 IQKPAEKPVELQIIQDIKPPPPPKPEEPKPKEKPPEPPKMVEKVAKVPEPPKEVEKVATP 108 + PA+ + +P P+PE E P E P ++EK P+P + K Sbjct: 54 MVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQ 113 Query: 109 VQKTTPVAQTTKVATPAPAAPSTPSPSPVAAPAPVAAAAPALKPAGVTRGVSEGSAGCEK 168 ++ ++ + AP+ P+ S A + A P ++R + Sbjct: 114 PKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN---------Q 164 Query: 169 PEYPREALMNEEQGTVRIRVLVDTSGKVIDAKVKKSSGSKTLDKAATKAYSLCTFKPAMK 228 P+YP A +G V+++ V G+V + ++ + + ++ A ++P Sbjct: 165 PQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKP 224 Query: 229 DG 230 Sbjct: 225 GS 226
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.6 bits (59), Expect = 0.027 Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 4 ILIALLIIVFGYSLALVLQNPTELPVDLLFTQVPAMRLGLLLLLTLALGIVVGLLLGVQV 63 + L +++ + ++++ + L + + L +L + I + + + Sbjct: 141 LKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISI 200 Query: 64 FRV-FQKSWEIKRLRKDIDHLRKEQIQS 90 F+ IK L+ D +++E + Sbjct: 201 ADYAFEYYQYIKELKMSKDEIKREYKEM 228
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 106 bits (267), Expect = 5e-34 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVG 66 NK DLI ++A L + AV + + L+ ++++ GFG+F + R R G Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 67 RNPKTGKSVDVAAKAVPHFKPGKALRDAV 95 RNP+TG+ + + A VP FK GKAL+DAV Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.032 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%) Query: 5 IITIDGPSGSGKGTLAAKLAAYYQF--HLLDSGA 36 + ++G G GK TL L F D G Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.7 bits (64), Expect = 0.011 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 24 RLTRVSGFTLVELLVAIAIFAVLSLL 49 + GFTL+E++V I I VL+ L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASL 28
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 37.6 bits (87), Expect = 3e-06 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 1 MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVA 54 M+ +GFTLLE+M+ L + V+A V + + S ++ +T A+F A Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGM---VLLAFPASRDDSAAQTLARFEAQLRFV 51
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 48.8 bits (116), Expect = 9e-10 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 11/148 (7%) Query: 9 SQKGFTLIEVMVVIVIMTIMTSLVVLNIGGVDQKKAMQARELFLLDLQKINKESLDQSRV 68 Q+GFTL+E+M+++++M + +V+L A Q F L+ + + L + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 69 LALETHGETDVSPFSYELYEYHDQSTLQVQDIKNRWQKYTEFKTRQLPAHVSFSVQPLDD 128 + V P ++ + + W Y R S S + Sbjct: 62 FGVS------VHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGS---IAG 112 Query: 129 Q--NYSKAKNTDLIGGQTPQLIWFGNGE 154 N + A+ G P ++ F GE Sbjct: 113 GKLNLAFAQGEAWTPGDNPDVLIFPGGE 140
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.007 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 14/216 (6%) Query: 44 NSVILKSDLEQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGIKPDE 103 +++ +S L Q E Q + + + + ++ D+ + E+V + E Sbjct: 135 DTLKTQSSLLQARLEQT-RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193 Query: 104 KSLNEAVLKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINR-LRQQQVMSRI 162 + K + A + + A YENL L L +Q +++ Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINR-YENLSRVEKSRLDDFSSLLHKQAIAKH 252 Query: 163 KISDQ-----DVDNFLKSPQGQ-AALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSN 216 + +Q + N L+ + Q + ++ Q E+ +L Q+ Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ----LVTQLFKNEILDKLRQTT 308 Query: 217 DLNALKKLSTATVKVEGADMGFR-PLSDIPAELAAR 251 D L L A + R P+S +L Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.9 bits (142), Expect = 4e-13 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%) Query: 1 MSKKDDIITTALRLFNSYSYNSIGVDRIISESGVAKMTFYKYFPSKEKLIEECLLLRNSL 60 + I+ ALRLF+ +S + I +GV + Y +F K L E L S Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 LQNSLTAAISKEDETNPLARIKAIFLWYSDWFNSED----FNGCMFQKALEE 108 + L + +PL+ ++ I + + +E+ +F K Sbjct: 70 IG-ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 27.9 bits (62), Expect = 0.040 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 20/137 (14%) Query: 17 VFSEEKTLSAAARKLGVDHATVARRIAQLEDNL-KLKLVDRRPRTYILTSEGEHLAKIVT 75 VFSE K LS RKL A V+ Q+ L K+ ++++ ++++++++ Sbjct: 59 VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQK----------QNVSELLS 108 Query: 76 RMMEETFSIERLAQAGQQEISGVVSVSLPPATAAHLVMPHLGKFYRQYPELQ-LRILGDV 134 + ++ + + ++ L + PEL L L + Sbjct: 109 LLS-------NSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVEQ 161 Query: 135 HYASLQHREADIAVRFG 151 S+ E + G Sbjct: 162 ALVSM-AEEQGETIVLG 177
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-09 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 11/113 (9%) Query: 926 RKRILVVDNEAVDRGLVANFLKPLGFMIEEAESGIDCLRRVPIFQPNLILMDLNMPLMGG 985 ILV D++A R ++ L G+ + + R + +L++ D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 986 WETARLLRQNNITNVPILIISANAGEREVNPQDAVLS-----EDFMLKPIDLN 1033 ++ +++ ++P+L++SA A+ + D++ KP DL Sbjct: 63 FDLLPRIKKAR-PDLPVLVMSAQN-----TFMTAIKASEKGAYDYLPKPFDLT 109
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (280), Expect = 1e-31 Identities = 82/259 (31%), Positives = 122/259 (47%), Gaps = 17/259 (6%) Query: 41 SEKLKGKVAVISGGDSGIGRSVAVLFAREGADI-AVLYLEEDQDAEITKQLIEKEGQQCL 99 ++ ++GK+A I+G GIG +VA A +GA I AV Y E E ++ E + Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL--EKVVSSLKAEARHAE 60 Query: 100 LLKGDISDPDLAKQNIDKVLQHFGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFA 159 D+ D + ++ + G I+ILVN AGV + I S+S+E+ E TF N Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTG 119 Query: 160 MFYLTKEAIPYM--EEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQK 217 +F ++ YM SI+ S + + YAS+K A FT+ L L + Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY- 178 Query: 218 KGIRVNGVAPGPIWT----PLIPSSFDAETV-----EKFGKDTPMGRMGQPSEVAPAYLF 268 IR N V+PG T L AE V E F P+ ++ +PS++A A LF Sbjct: 179 -NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 269 LASDDASYITGQVIHVNGG 287 L S A +IT + V+GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 8e-11 Identities = 23/193 (11%), Positives = 65/193 (33%), Gaps = 18/193 (9%) Query: 13 VVNKAIDLFHHCGFHLIGVDRIVKESEITKATFYNYFHSKERLIEICLMVQKEKLQEQVV 72 +++ A+ LF G + I K + +T+ Y +F K L + + + E + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 73 A-MVEYDLNTAAIDKLKKLYYLHTDLEGPYYLLYKAIFEIKNSYPNAYQTAMRYRTWLKN 131 ++ + ++ + ++ L + + + + EI + +N Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEE---RRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 132 ---EIYSQLRMLNADA-------SFTDAKLFVYMVEGTIIQLLSS----DGAIEREKMLD 177 E Y ++ + + ++ G I L+ + + + +K Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEAR 192 Query: 178 CFLNSFVRNFSPC 190 ++ + + C Sbjct: 193 DYVAILLEMYLLC 205
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.024 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 9/103 (8%) Query: 614 LLVGPSGVGKTETALALANELYGGEQHLITINMSEYQEAHTVSSL----KGAPPGYVGYG 669 ++ G SG GK A AL + + INM+ S L KGA G Sbjct: 164 MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRS 223 Query: 670 QGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLE 712 G + + LDEI D Q +V +G Sbjct: 224 TG-----RFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYT 261
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 100 bits (250), Expect = 7e-27 Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 11/112 (9%) Query: 154 FESGSAVLTEAGQKILDEMAVALNKVGGK--KVKIVGHTDSSGDATKNLKLSQDRALAVK 211 F A L GQ LD++ L+ + K V ++G+TD G N LS+ RA +V Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 212 NYLISKNIPADHLSTEGLGSSKPVADNTSAEGRKK---------NRRIEFTV 254 +YLISK IPAD +S G+G S PV NT +++ +RR+E V Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 26.7 bits (59), Expect = 0.008 Identities = 8/24 (33%), Positives = 16/24 (66%) Query: 55 VETITIEKGQTVKTGQVLFTLAPV 78 V+ I +++G++V+ G VL L + Sbjct: 107 VKEIIVKEGESVRKGDVLLKLTAL 130
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 2e-11 Identities = 17/65 (26%), Positives = 24/65 (36%) Query: 5 EASFRALRVLHTAKDLFNQYGFHKVGIDRIIAESKVTKATFYNHFHSKERLIEMCLTFQK 64 EA +L A LF+Q G + I + VT+ Y HF K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 DGLKE 69 + E Sbjct: 68 SNIGE 72
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.011 Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 510 APINGVISAWKVENGEQVTEGQVVAIMEAMKMEVQVLAHRSGVIQIGAE 558 N ++ V+ GE V +G V+ + A+ E L +S ++Q E Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 34.0 bits (77), Expect = 0.004 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 25/162 (15%) Query: 604 DKAESEDRGEGFELRTDQWGALRAGQGLLVSTHKQDNAKG----EHLDAEVAKKQLEGSQ 659 D E E++ + E + + Q K++ AK E+L ++ Q + Sbjct: 137 DPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQ---NL 193 Query: 660 TNSKALSDIAKNQKTDEIESIEQLKDFASQIQQQIAKFEKALLLLSSPDGIALSSSEDIH 719 +N+K LS++ K Q+ +E++ +E+L+D Q Q AL E+++ Sbjct: 194 SNNKNLSELIKQQRENELDQMERLEDMQEQAQAN-----------------ALKQIEELN 236 Query: 720 -ISADAQINQIAGDSINISTQKNVIAHAQNRLSLFAAQSGLK 760 A+ + Q A D I+I T K+ + N + L + S + Sbjct: 237 KKQAEEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWR 278
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.4 bits (79), Expect = 7e-04 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 13/91 (14%) Query: 175 NDKTPMAVGSTFKLLVLKAYEDAIKKGELKRETIVSLKEKNRSLPTGVLQNLP-----AG 229 +++ PM STFK+++ A + G+ + E + ++++ ++ P Sbjct: 59 DERFPMM--STFKVVLCGAVLARVDAGDEQLERKIHYRQQD------LVDYSPVSEKHLA 110 Query: 230 TPINLELLAQLMIQISDNTATDSLIDVLKKP 260 + + L I +SDN+A + L+ + P Sbjct: 111 DGMTVGELCAAAITMSDNSAANLLLATVGGP 141
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 67.9 bits (166), Expect = 2e-14 Identities = 76/390 (19%), Positives = 147/390 (37%), Gaps = 48/390 (12%) Query: 23 LVTCLLLMIMDGYDIQSMAYAAPLIIEEW---GVQKSMLGVVFSASLFGLFVGSFLLSSL 79 L+ L + +D I + P ++ + + G++ + F + +L +L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 80 SDRFGRRPILLISTFIFSILMLLTPHVGNIEQLTVIRFVTGIFLGGIMPNVMAYSSEIVP 139 SDRFGRRP+LL+S ++ + + L + R V GI G AY ++I Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITD 125 Query: 140 YKSRIFTMMVISCGYTVGAMLGGGISALLVPWGGWQAIFYFGGIIPLIIFFITFFKLPES 199 R +S + G + G + L+ + A F+ + + F F LPES Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCFLLPES 184 Query: 200 -------LYFLSENSKNSSKILFWLKKFYPALTFNAEIKIINNTEVQVKKSPLELFKNQR 252 L + N S + + + ++++ QV + +F R Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVG----QVPAALWVIFGEDR 240 Query: 253 AFFTYSIWIISILNMISLYFLANWLPTLAKESGLSLNQALLIGSTLQLGGTIGSVVMGLK 312 F + I I ++ + + + SL QA++ G G ++++G+ Sbjct: 241 --FHWDATTIGI--SLAAFGILH-----------SLAQAMITGPVAARLGERRALMLGMI 285 Query: 313 IDKTGFYKVLIPVFLVAVISVALIGYSVSHIVLLFIIIFIAGFAIVGGQPAINALSASYY 372 D TG+ L+ ++ + I++ +A I G PA+ A+ + Sbjct: 286 ADGTGY---------------ILLAFATRGWMAFPIMVLLASGGI--GMPALQAMLSRQV 328 Query: 373 PVSLRTTGVGWSIGIARLGSVIGPLFGGYL 402 + G + L S++GPL + Sbjct: 329 DEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Score = 35.2 bits (81), Expect = 5e-04 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 8/156 (5%) Query: 277 LPTLAKESGLSLNQALLIGSTLQLGGT---IGSVVMGLKIDKTGFYKVLIPVFLVAVISV 333 LP L ++ S + G L L + V+G D+ G VL+ A + Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 334 ALIGYSVSHIVLLFIIIFIAGFAIVGGQPAINALSASYYPVSLRTTGVGWSIGIARLGSV 393 A++ + + +L+I +AG G A A R G+ G V Sbjct: 88 AIMATA-PFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 394 IGPLFGGYLSQFLVITHL-FVIAAIPSLFVIIMLMI 428 GP+ GG + F H F AA + + Sbjct: 146 AGPVLGGLMGGFSP--HAPFFAAAALNGLNFLTGCF 179
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 2e-13 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 14/169 (8%) Query: 37 ETSSKKLHIIRTAIRLFTTHGFHTTGVDLIVKESEIPKATLYNYFHSKERLIEICIAFQK 96 E + HI+ A+RLF+ G +T + I K + + + +Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 97 SLLKEEVLAIIYSSRYCTPTDKLKEIVVLHVN---SNSLYHLLLKALFEIKVAYQQAYRM 153 S + E L + P L+EI++ + + LL++ +F + + Sbjct: 68 SNIGELELEYQ-AKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 154 A-------IEYRKWLTREIFELIFSLEIRA-LKPD--ANMVLNLIDGLM 192 +E + + + I + + A L A ++ I GLM Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>PF06917#Periplasmic pectate lyase Length = 555 Score = 28.7 bits (64), Expect = 0.033 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 2/85 (2%) Query: 37 YYQEEGRKMKSARLIVQILKCLKKNWGKLADESIHDLTPALVKQWRDKRLKQVKGATVIR 96 YY +G + L V L L + W DE + DL L+ +W+ L + + + Sbjct: 379 YYGVKGTVISPFPLDVDYLLPLVRAWRLSEDEELLDLIGVLLLRWQLAELNKTQRRATLM 438 Query: 97 EMAMYSS--VFDFARKELFLTKENP 119 + A EL + P Sbjct: 439 AAQRPIASPYLLLALVELAEHCQCP 463
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.2 bits (86), Expect = 1e-04 Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 4/191 (2%) Query: 24 VDNNKTHSNLPRSVVLLF-AIASGASVANVYYAQPLLDILASDFNVSHAAIGGVVTATQI 82 ++ + + SNL + +L++ I S SV N L +A+DFN A+ V TA + Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 83 GCALALVFLVPLGDLINRRRLMAIQLMALISALLMVAFAHSTIVLLTGMLAVGLLGTAMT 142 ++ L D + +RL+ ++ ++ HS LL + G A Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAF 120 Query: 143 QGLIAYA-ASAAAPHEQGHVVGTAQSGVFIGLLLARVFSGGISDVAGWRGVYFCAAIIML 201 L+ A +G G S V +G + G I+ W Y ++ Sbjct: 121 PALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMIT 178 Query: 202 MIALPLWRRLP 212 +I +P +L Sbjct: 179 IITVPFLMKLL 189
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 0.001 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 31/171 (18%) Query: 568 VVGQDEAVVAVSNAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELTKALANFLFDSDDAM 627 +VG+ A+ + + R +D + + G +G GK + +AL ++ + Sbjct: 139 LVGRSAAMQEIYRVLAR--LMQTD-----LTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 628 IRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGVLTEAVRRKPYSV-------VLFDEVEKA 680 + I+M+ S L G E G T A R + DE+ Sbjct: 192 VAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 681 HPDVFNILLQVLDDG---RLTDSQGRVVDFKNTVIVMTSNLGSQDVRELGE 728 D LL+VL G + D + IV +N +D+++ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN---KDLKQSIN 288
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.005 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 184 VVAPADGVVVQTGHYFFNGQTVLIDHGQGLISMFCHLSEIKVEKGQHIRQGETL 237 V+ + V G +G++ I + I + EI V++G+ +R+G+ L Sbjct: 76 VLGQVEIVATANGKLTHSGRSKEIKPIENSI-----VKEIIVKEGESVRKGDVL 124
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.5 bits (63), Expect = 0.018 Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 3/187 (1%) Query: 3 EQLQRLQAHIGVLKTRLHHLESENSALSEAKELAETEHHAQVVQKNSIITKKQE---EIE 59 + L + LK L E S E + + + + +K + +E Sbjct: 71 LKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALE 130 Query: 60 TLTEQLTQLQGQFQQLNQDANTLAERYSRLEKSTTDLKNRFQEILAERNELRVTKEKLQS 119 T + + L + LA R + LEK+ N A+ L K L++ Sbjct: 131 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 120 QQRQTQQELHDLQQDRDRLLQKNELAKAKVEAIIQRLAILGTAQDQHAQEIQQLAHPNAE 179 +Q + ++ L K + +A+ A+ R A L A + + Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 180 AGEETQS 186 E + Sbjct: 251 LEAEKAA 257
>SECA#SecA protein signature. Length = 901 Score = 34.5 bits (79), Expect = 3e-04 Identities = 12/15 (80%), Positives = 12/15 (80%) Query: 193 DPCICGSGKKAKWCH 207 DPC CGSGKK K CH Sbjct: 883 DPCPCGSGKKYKQCH 897
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 35.6 bits (81), Expect = 1e-04 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 69 GYITWSPKDVFEHSYQLDGFQNCVMGREIHKDDNGVTVTHNETVKTRDGEQSLETGHFYD 128 G +T +P + S+ QN M ++++ N VT NE V+T+ EQ E G F+D Sbjct: 61 GVLTQTPGTI--TSFLKASIQNTDMNQDLNALANNVTTKANEVVQTQLREQQAEVGKFFD 118 Query: 129 I 129 I Sbjct: 119 I 119
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 30.1 bits (67), Expect = 0.017 Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 117 KKPNGEKVYAAAKKIPLVGGALVDDLLSKIAESARQKVEYAIRDGISSGKTNQE 170 K P +KV A + G L DD++ +IA+ A++ E A + + S Q+ Sbjct: 292 KNPENQKVNIDANGNAIPSGELKDDIVEQIAQQAKEAGEVARQQAVESNAQAQQ 345
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 27.8 bits (62), Expect = 0.046 Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Query: 10 ELLRLAIAQGKAEGKKISKDVVLG---ELALLSPAAKLWATVLIEKVDF 55 +++ + +EG +S + +G E+ P+ + A + ++VDF Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEI----PSTAVAANLFAKEVDF 449
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 26.7 bits (59), Expect = 0.002 Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 2/34 (5%) Query: 8 AWGLLISFFTAAISGAVVLWWLARKEHIKKGIHQ 41 +G A ++G + + R+E + H+ Sbjct: 225 TFG--PWMLLALLAGFMAFRVMLRQEKRRVSFHR 256
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.032 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 7/111 (6%) Query: 92 YWLCTTIGIVGYVVIAFSGVGMFTDSK-DHVIFGEGNTLYSLIGSSIFVWLVHWLVSRGI 150 YW C IG Y + F ++ K +IF N SL+G + ++ +G Sbjct: 12 YWYCQGIGWGVYTLTGFGFASLYGSPKLHSMIF---NIAISLMGLVLTHAYRSFIKRQGW 68 Query: 151 KEAAIVNLLATIAKIIPMVVFIFFTFIAFKFDLFKLNLHDFSLKVPLWQQV 201 + +N+ I +++P V I + +++L + V + Sbjct: 69 LK---LNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPL 116
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.8 bits (124), Expect = 3e-09 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 1/174 (0%) Query: 47 IATFFDAYTVLAIAFALPQLITEWHLTPAYVGAIIAAGYVGQLIGAIFFGSLAEKVGRLK 106 I +FF + + +LP + +++ PA + A + IG +G L++++G + Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 107 VLSFTILLFVAMDISCLFAWSGMSLLIF-RFLQGVGTGGEVPVASAYINEFIGAEKRGKF 165 +L F I++ + S SLLI RF+QG G + + +I E RGK Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 166 FLLYEVLFPLGLMFAGMAAFFLMPIYGWKVMFIVGLVPSLLVIPLRFFLPESPR 219 F L + +G + W + ++ ++ + V L L + R Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 106 bits (267), Expect = 5e-27 Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 20/397 (5%) Query: 27 FMVVLDTTIANVSVPHITGNLAVSSTQGTWVVTSYAVAEAICVPLTGWLAGRFGTVRVFI 86 F VL+ + NVS+P I + WV T++ + +I + G L+ + G R+ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 87 FGLIGFTVFSFLCGLATS-LEMLVFFRIGQGLCGGPLMPLSQTLLMRIFPQEKHAQAMGL 145 FG+I S + + S +L+ R QG L ++ R P+E +A GL Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 146 WAMTTVVGPILGPILGGLISDNLSWHWIFFINLP-VGIVCVLAAMRLLRVAETETISLRI 204 +G +GP +GG+I+ + HW + + +P + I+ V M+LL+ I Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 205 DTVGLGLLILWIGALQLMLDLGHERDWFNSTSIVVLALTAAIGFVVFLIWELTDKHPVVD 264 G++++ +G + ML F S+ + F++F+ P VD Sbjct: 202 ----KGIILMSVGIVFFMLFTTSYSISFLIVSV--------LSFLIFVKHIRKVTDPFVD 249 Query: 265 VKVFRHRGFAISVLALSLGFGAFFGSIVLIPQWLQM--NLSYTATWAGYLTATMGFGSLT 322 + ++ F I VL + FG G + ++P ++ LS + + + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 323 MSPIVAKLSTKHDPRALASFGLILLGIVTLMRAFWTTDADFMALAWPQILQGFAVPFFFI 382 I L + P + + G+ L + L +F + + + + F Sbjct: 310 -GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF-LLETTSWFMTIIIVFVLGGLSFTKT 367 Query: 383 PLSNIALGSVLQQEIASAAGLMNFLRTMAGAIGASIA 419 +S I S+ QQE + L+NF ++ G +I Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 114 bits (288), Expect = 2e-30 Identities = 70/411 (17%), Positives = 156/411 (37%), Gaps = 70/411 (17%) Query: 25 KRKKFLGFFALILLIAAILYAIWALFLNHSVSTDNAYVGAETAQITSMVSGQVAQVLVKD 84 +R + + +F + L+ A + ++ + + + +I + + V +++VK+ Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 85 TQTVHRGDVLVRIDDR--DAKIALAQAEAELAKAKRQYKQTAANSSSLNS---------- 132 ++V +GDVL+++ +A Q+ A+ ++ Q + S LN Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 133 -------QVVVRADE-----INSAKAQVAQAQADYDKAALE------------------- 161 + V+R ++ + Q Q + + DK E Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 162 --LNRRAQLAASGAVSKEELTKAQSAVETAKAGLELAKAGLAQATSSRKAAESTLAANEA 219 L+ + L A++K + + ++ A L + K+ L Q S +A+ Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 220 LIQGVSETST------PDVQVAQAHVEQAQLDLERTVIRAPVDGVITRRNIQ-VGQRVAP 272 L + +E ++ + + + + + +VIRAPV + + + G V Sbjct: 295 LFK--NEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352 Query: 273 GTSMMMIVPLND-LYVDANFKESQLKKVRPGQPVTLTSDLYGDDVEYHGKVVGFSGGTGS 331 ++M+IVP +D L V A + + + GQ + + + +G +VG Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF--PYTRYGYLVG------- 403 Query: 332 AFALIPAQNATGNWIKVVQRLPVRIALDPKELAEH----PLRVGLSMEAKV 378 I + +V V I+++ L+ PL G+++ A++ Sbjct: 404 KVKNINLDAIEDQRLGLVFN--VIISIEENCLSTGNKNIPLSSGMAVTAEI 452
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 47.1 bits (112), Expect = 3e-08 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 36/159 (22%) Query: 4 NVLITGASGFIGTHLIRFLLQKNYNVIAV-------------TRQA-----------GKK 39 L+TGA+GFIG H+ + LL+ + V+ + R Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 40 SDHPALQWVQKFEDISTRQIDYVVNLAGANIGEKRWTESRKKHLIESRVNTTQKLYAWLK 99 +D + + ++ + V + + E+ +S + + + Sbjct: 62 ADREGMTDL-----FASGHFERVFISP-HRLAVRYSLENPHA-YADSNLTGFLNILEGCR 114 Query: 100 QSQIFPEVIVSGSAIGYYGIDAQEKWTEVCTEQSSPQPI 138 ++I + S S++ YG++ + ++ + S P+ Sbjct: 115 HNKIQHLLYASSSSV--YGLNRKMPFST---DDSVDHPV 148
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 8e-04 Identities = 48/318 (15%), Positives = 101/318 (31%), Gaps = 37/318 (11%) Query: 497 EQQRKDKDQKLAQVTQLDLIQQKIKVYHELYAELQQFTEKHTQASAQEDQLKTVCQLAEQ 556 E +++++ +T + IQ + E+ + E A +T +AE Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 557 DYQTAKTEREKLQHI---LQQQRLLHTENIEQLRANLKEGEACLVCGSTHHPYRIDDSAV 613 Q +KT + Q Q R + E ++AN + E T + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 614 SKALFDLQQQQEQQAIALEQTKFNAWQTQQHALTQCRAELEQVQ-------------KYL 660 + +++E+ + E+T+ T Q + Q ++E Q Q K Sbjct: 1104 AT-----VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 661 AQLQTKQSSLQQ-------ELKQAFNLNQLHIELNQAPEQILQTLNELRQATQTAISLFD 713 + +Q ++Q + N E T Q T + S Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 714 SENARLTQAIKQHNQLIQTIQRNESLLNTAQQWQQQVQHIVECLSETEQHAWQQASSQTA 773 +N +H + ++++ N T+ + + + S A ++ Sbjct: 1219 PKN--------RHRRSVRSVPHNVEPATTSSN-DRSTVALCDLTSTNTNAVLSDARAKAQ 1269 Query: 774 KQTWAILDARAKQLEQQE 791 + A ++ + Q E Sbjct: 1270 FVALNVGKAVSQHISQLE 1287 Score = 32.3 bits (73), Expect = 0.014 Identities = 42/291 (14%), Positives = 92/291 (31%), Gaps = 19/291 (6%) Query: 198 KIGELAFRKTADIAKQRKQLEEFLGHIEILSDEEIAAFTEQYQQAEQNYQQLEQQKHVLD 257 + E + +++ + K + E ++ E + Q E E ++ Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE---- 1094 Query: 258 KQQQWFERKAKLEQEVQAKQQQFQTQQ--NHHQQLASEREQLKRLEVFSEIRPQVFQQAQ 315 Q + A +E+E +AK + +TQ+ Q++ ++EQ + ++PQ + Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE------TVQPQAEPARE 1148 Query: 316 NLQTLQQLEPQIQQAQSKFNELVQIFETGQKQYQLAEQQLKQTLDFEQQHQHALNQVRQS 375 N T+ EPQ Q + + Q + + + ++ N + Sbjct: 1149 NDPTVNIKEPQSQ--TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 376 IQERAFIADEYK-KCKEKRHVLEQKLSPLQQQQNAVQQQIAQL----EQNKIHLQQQLIQ 430 Q K K + +R V + ++ + L N + Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARA 1266 Query: 431 TQQYAVLDKGLSAHLHQLGQFIQNYQAIEEQLGNPTFARQKLSEAKSELEQ 481 Q+ L+ G + H + N + N + + S Sbjct: 1267 KAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSS 1317
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 35.9 bits (83), Expect = 9e-05 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 21/220 (9%) Query: 17 LQQIKTACELAQRAPETVQLLAVSKT----HQSERLREMYAAGQRAFGENYLQEALDKID 72 LQ +K + ++A ++ +V K H ER+ F L+EA+ Sbjct: 11 LQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWS-AIGATDGFALLNLEEAI---- 65 Query: 73 ALQDLDIEWHFI--GHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNICLQ 130 L++ + + + + +Q V + L N R + Sbjct: 66 TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI----Y 121 Query: 131 VNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLMV-IPAPDNTAAFVDAKKLFDAVKD 189 + ++ ++ G P+ V + Q+ + + LM ++ A + + Sbjct: 122 LKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAAE 181 Query: 190 QHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 229 S+ S+ A VR G L+GA Sbjct: 182 GLECR-----RSLSNSAATLWHPEAHFDWVRPGIILYGAS 216
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 45.7 bits (108), Expect = 7e-09 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Query: 39 CTVIELNNKVVGFCILQPVLDE-ANLLLMAIDPQMQGKGLGYQLLDASIE-RLENHPVQI 96 + L N +G ++ + A + +A+ + KG+G LL +IE ENH + Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 97 FLEVRESNKAAIGLYEKTGFHQIDVRRNYYPTQEGGRENAV 137 LE ++ N +A Y K F V Y E A+ Sbjct: 127 MLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAI 167
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 78.0 bits (192), Expect = 1e-17 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 13 VNVGTIGHVDHGKTTLTAAI--ATICAKTYGGEAKDYSQIDSAPEEKARGITINTSHVEY 70 +N+G + HVD GKTTLT ++ + G K ++ D+ E+ RGITI T + Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 DSPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPMPQTREHILLSRQVGVPY 130 +D PGH D++ + + +DGAIL+ +A DG QTR R++G+P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122 Query: 131 IIVFLNKCDLVDDEELLELVEMEVRELLS 159 I F+NK D + L V +++E LS Sbjct: 123 TIFFINKIDQNGID--LSTVYQDIKEKLS 149
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 596 bits (1538), Expect = 0.0 Identities = 169/686 (24%), Positives = 285/686 (41%), Gaps = 78/686 (11%) Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWSGMGNQFPQHRINVIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWR 128 + W ++N+IDTPGH+DF EV RS+ VLDGA ++ A GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QANKYKVPRLAFVNKMDRTGANFFRVVEQMKTRLGANPVPIVVPIGAEDTFTGVVDLIEM 188 K +P + F+NK+D+ G + V + +K +L A V V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK----------QKVELYPNM 164 Query: 189 KAIIWDEASQGMKFEYGEIPADLVDTAQEWRTNMVEAAAEASEELMDKYLEEGDLSKEDI 248 + E+ Q + E +++L++KY+ L ++ Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYMSGKSLEALEL 200 Query: 249 IAGLRARTLASEIQVMLCGSAFKNKGVQRMLDAVIEFLPSPTEVKAIEGILDDKDETKAS 308 R + + GSA N G+ +++ + S T Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243 Query: 309 REASDEAPFSALAFKIMNDKFVGNLTFVRVYSGVLKQGDAVYNPVKSKRERIGRIVQMHA 368 ++ FKI + L ++R+YSGVL D+V K K +I + Sbjct: 244 ---RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSIN 299 Query: 369 NERQDIDEIRAGDIAACVG----LKDVTTGDTLCDEKNIITLERMEFPDPVIQLAVEPKT 424 E ID+ +G+I L V GDT + ER+E P P++Q VEP Sbjct: 300 GELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR----ERIENPLPLLQTTVEPSK 354 Query: 425 KADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREFGVEANIG 484 +E + AL ++ DP R + D + + I++ +G++ +++ ++ ++ VE I Sbjct: 355 PQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIK 414 Query: 485 KPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLDVEAAGKEYEFAEEVVGGVV 544 +P V Y E K E + + + + + PL + G ++ V G + Sbjct: 415 EPTVIYMERPLKKA--EYTIHIEVPPNPFWASIGLSVSPLPL---GSGMQYESSVSLGYL 469 Query: 545 PKEFFGAVDKGIQERMKNGVLAGYPVVGVKAVLFDGSYHDVDSDELSFKMAGSYAFRDGF 604 + F AV +GI+ + G L G+ V K G Y+ S F+M Sbjct: 470 NQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVL 528 Query: 605 MKADPVLLEPIMKVEVETPEDYMGDIMGDLNRRRGMVQGMDDLPGGTKAIKAEVPLAEMF 664 KA LLEP + ++ P++Y+ D + + L + E+P + Sbjct: 529 KKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDT-QLKNNEVILSGEIPARCIQ 587 Query: 665 GYATQMRSMSQGRATYSMEFAKYAET 690 Y + + + GR+ E Y T Sbjct: 588 EYRSDLTFFTNGRSVCLTELKGYHVT 613
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.046 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 26/88 (29%) Query: 619 RFYQVYDPSYYKPEYAIKESWRWLHAIETGLKGKPI----------DWTVLDDVIETIVK 668 RF+ VY P + +P+ A+ +++ A+ L+GK I D+T +DD+ E I++ Sbjct: 177 RFFTVYGP-WGRPDMAL---FKFTKAM---LEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 669 NVPVL---------EAIQDVAPDAGYRV 687 V+ E A A YRV Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRV 257
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 1e-04 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 31/150 (20%) Query: 397 VAVETEALKTQKEIELI--PPPLYVKVDAERRYLHRVV-----QNLVGNAVRYC------ 443 +A E + + ++ I L + + V Q LV N +++ Sbjct: 218 LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQ 277 Query: 444 DNKVRITGGIHSDGMAFVCVEDDGPGIPEQDRKRVFEAFARLDDSRTRASGGYGLGLSIV 503 K+ + G +G + VE+ G + ++ S G GL ++ Sbjct: 278 GGKILLKG-TKDNGTVTLEVENTGSLALKNTKE----------------STGTGL-QNVR 319 Query: 504 SRIAYWFGGEIKVDESPSLGGARFIMTWPA 533 R+ +G E ++ S G ++ P Sbjct: 320 ERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 6e-22 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 8 PKILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGL 67 IL+ +DD + + + L R G +V + ++ R I + DLVV DV++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 68 TVCREVRPHY-HQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTD 126 + ++ P+L+++A+ M + E GA DY+ KP L+ I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 127 KTVEDEVAQRIEFDDLV 143 + + LV Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 34.2 bits (78), Expect = 0.003 Identities = 49/275 (17%), Positives = 93/275 (33%), Gaps = 18/275 (6%) Query: 292 GNGSGDGAGNGIASGNGEHNYGIGNGNGDDVDITAPITGVLNISGNSFTLIGNSSSSSVN 351 N G GAG +S G + ++ +I+ LN++ NS L+GN + Sbjct: 204 NNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQ 263 Query: 352 TAPTTTS---NTVNDNDTIDNGNSGGTGSGSGNGSGDGLLNGAASGNGEHNYGIGNGNGD 408 + +T+N + N G N + G++ + G + G Sbjct: 264 YVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAG--- 320 Query: 409 DVDITAPITGVFNFSGNSFSIIGNSSSSSINTAPTTTTNTVNDNDVTDNGNDG------G 462 ++I AP G + N +++ + ++ N ++ V + N Sbjct: 321 -LNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNN--SNTQVINPPNSAQKTEIQP 377 Query: 463 GLVGGSSGNGSGDGLLNGAASGNGEHNYGIGNGNGDDADFTFPLTGVLNFSGNSLSGFGS 522 V G + ++N N + I G + T L+ ++ Sbjct: 378 TQVIDGPFAGGKNTVVN-INRINTNADGTIRVGGFKASLTTN--AAHLHIGKGGINLSNQ 434 Query: 523 SSSDSVNVAPTTATNTVNDNDTIDNANTGGLGDGS 557 +S S+ V T TV+ ++N G GS Sbjct: 435 ASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGS 469 Score = 31.2 bits (70), Expect = 0.029 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 9/167 (5%) Query: 29 GSGDGLLNGISSGNGEHNYGIGNGIADDASITAPITIPLNLSGNSITLIGN---SSSSSV 85 GSG G + + + GI + +A I+ LNL+ NS+ L+GN V Sbjct: 208 GSGAGRKASSTVLTLQASEGITSRE--NAEISLYDGATLNLASNSVKLMGNVWMGRLQYV 265 Query: 86 NSSPTTTSNNVNDNDVTNNGNGSTIGSGTGNGSGDGLLNGAASGNGEHNYGIGNGIADDA 145 + + + +N + VT N + + G N + G++ + G + G+ Sbjct: 266 GAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGL---- 321 Query: 146 SITAPLSIPINLAGNSITLIGDSSSSSVNNSATNTSNTVNDNDTTYN 192 +I AP N +++ + ++ +N+ N Sbjct: 322 NIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPN 368
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 27.7 bits (62), Expect = 0.015 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 14/64 (21%) Query: 44 ELIDIGAHALDLSNIGQYPLILTCLAD-DKAVQAVFDQIQTNLKAGQV--IVDFASLSVA 100 +LI A A +L+ D AV AVF + + L G+ ++ F + V Sbjct: 6 DLIAKVAEATELTK-----------KDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVR 54 Query: 101 ATKA 104 A Sbjct: 55 ERAA 58
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.6 bits (188), Expect = 1e-18 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 15/211 (7%) Query: 3 ILITGANTGIGFATAEQLVKQGQHVILACRNPQKAQEAQNKLRSLDQGQVDVVSLDLNSL 62 ITGA GIG A A L QG H+ NP+K ++ + L++ + + D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFPADVRDS 69 Query: 63 ELTQKAAEEIADKYGSLDVLINNAGLF--SKTKQLTVDGFEQQFGVNYLGHFLLTQKLLP 120 + I + G +D+L+N AG+ L+ + +E F VN G F ++ + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 121 VLKQSPQARIIHLASIAHWVGSIKPNKFRAEGFYNPLFYYGQSKLANLLFSNALAEQLAD 180 + I+ + S V + Y SK A ++F+ L +LA+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTS------------MAAYASSKAAAVMFTKCLGLELAE 177 Query: 181 SSITNNALHPGGVASDIYRDLPKPVYAAMKV 211 +I N + PG +D+ L A +V Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQV 208
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.0 bits (65), Expect = 0.029 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 8/57 (14%) Query: 12 GENRVAATP--------ETVKKLISAGHSVVIERGAGVKAAYIDSAYEQVGATITDD 60 G RV +P ET+KKL+ G V+ G GV D + V A I D Sbjct: 160 GWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKD 216
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 3e-18 Identities = 35/123 (28%), Positives = 64/123 (52%) Query: 2 RILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLSGKHQALSEEYDLIILDVMLPKLDGWN 61 IL+ +D+ L Q LS AGY ++ + + + DL++ DV++P + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 IINDIRKSGKTMPILFLSARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQQ 121 ++ I+K+ +P+L +SA++ +K E GA DYL KPF EL+ I L ++ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 KED 124 + Sbjct: 125 RPS 127
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 1e-06 Identities = 21/167 (12%), Positives = 55/167 (32%), Gaps = 10/167 (5%) Query: 44 GDIENNVLATGTL-DATKLISVGAQVSGQVKKMYVQLGDQVKQGQLIAQIDSTTQENSLK 102 G +E A G L + + + + VK++ V+ G+ V++G ++ ++ + Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL------- 130 Query: 103 TSDANIKNLEAQRLQQIASLNEKQLEYRRQQQMYAQDATPRADLESAEAAYKTAQAQVKA 162 ++A+ ++ LQ Q+ R + + + + + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 163 LDAQIESAKITRSTAQTNIGYTRIVAPTDGTVVAIVTEEGQTVNANQ 209 + Q + + Q + + A + I E + Sbjct: 191 IKEQFSTWQ--NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Score = 42.1 bits (99), Expect = 3e-06 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 21/159 (13%) Query: 87 QLIAQIDSTTQENSLKTSDANIKNLEAQRLQQIASLNEKQLEYRRQQQMYAQDATPRADL 146 Q IA+ QEN + ++ ++Q Q + + + EY+ Q++ + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL----- 301 Query: 147 ESAEAAYKTAQAQVKALDAQIESAKITRSTAQTNIGYTRIVAPTDGTVVAI-VTEEGQTV 205 + + L ++ + + I AP V + V EG V Sbjct: 302 ----DKLRQTTDNIGLLTLELAKNEE-------RQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 206 NANQSAPTIVKIAKLQN-MTIKAQVSEADIMKVEKGQQV 243 + T++ I + + + A V DI + GQ Sbjct: 351 TTAE---TLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.8 bits (147), Expect = 6e-13 Identities = 66/263 (25%), Positives = 98/263 (37%), Gaps = 27/263 (10%) Query: 27 LAGKRFLIAGVASKLSIAYGIAQALHREGAEL-AFTYPNEKLKKRVDEFAEQFGSKLVFP 85 + GK I G A I +A+ L +GA + A Y EKL+K V + FP Sbjct: 6 IEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 86 CDVAVDAEIDNAFAELAKHWDGVDGVVHSIGF---APAHTLDGDFTDVTDRDGFKIAHDI 142 DV A ID A + + +D +V+ G H+L +D + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSL-------SDEEWEATFSVN 116 Query: 143 SAYSFVAMARAAKPLLQARQGCLLTLTYQGSERVMPNYNVMGMAKASLEAGVRYLASSLG 202 S F A +K ++ R G ++T+ + + +KA+ + L L Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 203 VDGIRVNAISAGPIRTL-----------AASGIKSFRKMLDANEKVAPLKRNVTIEEVGN 251 IR N +S G T A IK + PLK+ ++ + Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG---IPLKKLAKPSDIAD 233 Query: 252 AALFLCSPWASGITGEILYVDAG 274 A LFL S A IT L VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.008 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 GAIQKSVMLTIIAAAVGVALFFYAAFTANVGIAYAASIVGAIGGLVLALIT 75 GAI S+ + L A+ ++ + A S+VGA ++ +T Sbjct: 362 GAIDASL------TTISTVL---ASVSSGISAAATTSLVGAPVSALVGAVT 403
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 155 bits (393), Expect = 3e-51 Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 3/147 (2%) Query: 3 EEQQVQPQLALERIYTKDISFEVPGA-QVFTKQWQPELNINLSSAAEKIDPTHFEVSLKV 61 + QP L ++RIY KD+SFE P +F + W+P+L+ +LS+ A+++ +EV L + Sbjct: 12 TQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNI 71 Query: 62 VVQANNDNE--TAFIVDVTQSGIFLIDNIEEDRLPYILGAYCPNILFPFLREAVNDLVTK 119 V+ ++ AFI +V Q+G+F I +EE ++ + L + CPN+LFP+ RE V+ LV + Sbjct: 72 SVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNR 131 Query: 120 GSFPQLLLTPINFDAEFEANMQRAQAA 146 G+FP L L+P+NFDA F +QR + A Sbjct: 132 GTFPALNLSPVNFDALFMDYLQRQEQA 158
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 34.8 bits (80), Expect = 6e-04 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 5/112 (4%) Query: 252 QIYRYGIDSENYLRTNLELTHARPNQPILSNQF-SLTYADDQDDDLTWENRLFREHSFFA 310 ++ G D L N+ +H + + S +Y+ D + N + Sbjct: 584 NAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLE 643 Query: 311 NNRFNYGIYTGGYYNDNDLRLNSWGPFVSWRQPVLREWFFVQGDLNYFNDHR 362 +N +Y + TG + ++ +++R ++ +D + Sbjct: 644 DNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGN----ANIGYSHSDDIK 691
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 26.4 bits (58), Expect = 0.034 Identities = 6/28 (21%), Positives = 12/28 (42%) Query: 3 KKIGLISTVILSTVMFTGCQNMSPSDQR 30 KK+G + + LS ++ C + Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTS 29
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 25.7 bits (56), Expect = 0.018 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 27 LYMSHNDFNSLSILLTRASEKGEFSITR 54 +Y D L+I T+A+E G +++TR Sbjct: 641 VYYDKTDTGYLTIDGTKATEAGNYTVTR 668
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.1 bits (68), Expect = 0.020 Identities = 28/201 (13%), Positives = 66/201 (32%), Gaps = 22/201 (10%) Query: 258 LTLTVIGASLLWVGWFGFNGGSALGAGARASMAILVTQVAAAAAAFSWLVVERMIRGKAS 317 + + A L+ + + F S L + A + +++E Sbjct: 33 ALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ--SYLPFSQALSYVVDNVLLEFFYLCFPL 90 Query: 318 VLGGASGAVAGLVVITPAAGFVGVGGAL-----VMGLIGGVVCFWGITALKRLLKADDAL 372 + A A+A VV GF+ G A+ + I G + I +L LK+ Sbjct: 91 LTVAALMAIASHVVQY---GFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKS---- 143 Query: 373 DAFGLHAVGGIVGAILTGVFYSDEIIKAANVALAPTFAGQLWVQVEGVLATMVYSGIATF 432 + + ++ I+ G +++ + + + +L ++ F Sbjct: 144 -ILKVVLLSILIWIIIKGNLV--TLLQLPTCGIE-----CITPLLGQILRQLMVICTVGF 195 Query: 433 IILKVIDLIIGLRVNSDDERM 453 +++ + D + +M Sbjct: 196 VVISIADYAFEYYQYIKELKM 216
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.0 bits (88), Expect = 5e-06 Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 107 YIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIYVQADYGDDPAVALYTKLGIR 163 I D+AV+ ++R++G+ TAL++ A + ++ + A Y K Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 28.3 bits (63), Expect = 0.015 Identities = 8/25 (32%), Positives = 15/25 (60%) Query: 33 SYRELQEMLAERGVNVDHSTIYRWV 57 + EL ++L + G NV +T+ R + Sbjct: 21 TQDELVDILKKDGYNVTQATVSRDI 45
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 34.1 bits (78), Expect = 2e-04 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 14/108 (12%) Query: 113 GIFATLAEFERDLIRERTMAGLASARAR-GRKGGRKFALTKAQVRLAQAAMAQRDTSVSD 171 G + + T+ + + R A + L + A+ D+ + Sbjct: 124 GFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAAPDENLPPLLREALQIMDSDDGE 183 Query: 172 LCKELGIERVTLYRYVGPKGELRDHGKHVLGLALLQIVGGDKLIIPFC 219 G+E + G V ALLQIVGGDKLIIPFC Sbjct: 184 QAFLHGLESLI-------------RGFEVQLTALLQIVGGDKLIIPFC 218
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 30.3 bits (68), Expect = 0.006 Identities = 8/31 (25%), Positives = 13/31 (41%) Query: 151 VSFTSFDLNVANMDNFFAPVFTMGKYYTQGD 181 V+ S D+ N+ +FF V + G Sbjct: 56 VTVYSSDVKPENLRDFFISVLRANNFDMVGS 86
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.1 bits (65), Expect = 0.003 Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 43 YSGQLHIKELYVSQCDRNKGTGKAIMRFIARLALEQECLSLSWNAEKSNPGANRFYQALG 102 ++G I+++ V++ R KG G A++ A E L + N A FY Sbjct: 86 WNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHH 145 Query: 103 GRI 105 I Sbjct: 146 FII 148
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 34.2 bits (78), Expect = 9e-05 Identities = 23/83 (27%), Positives = 30/83 (36%) Query: 43 VEGLAIERGDLFYACPRASVFYGTALDADLRTRGVSTLVMAGISTTGVVLSSVAWASDAD 102 + LA E DL R S F T L +R G L++ GI L + A D Sbjct: 109 ITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMED 168 Query: 103 YDVRLVQDCCYDPDRDAHEALLR 125 V D D + H+ L Sbjct: 169 IKAFFVGDAVADFSLEKHQMALE 191
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 586 bits (1513), Expect = 0.0 Identities = 398/399 (99%), Positives = 399/399 (100%) Query: 26 VKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 85 +KPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 86 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYI 145 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYI Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYI 120 Query: 146 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 205 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 206 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 265 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR Sbjct: 181 LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 266 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 325 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRG 300 Query: 326 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 385 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA Sbjct: 301 WMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 386 ASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR 424 ASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR Sbjct: 361 ASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR 399
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 311 bits (797), Expect = e-111 Identities = 102/213 (47%), Positives = 140/213 (65%), Gaps = 1/213 (0%) Query: 10 MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAML 69 M +L +VI AAL+LLNE G+DGLTTRKLA++LG++QP LYWH +NKRALLDALA +L Sbjct: 1 MARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEIL 60 Query: 70 AENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFL 129 A +H +S+P A + W+SFL NA SFR+ALL YRDGA++H GTRP Q +T + QLRF+ Sbjct: 61 ARHHDYSLPAAGESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFM 120 Query: 130 CEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDE 189 E GFS D + A+ +S+FT+GAVLE+Q + +R ++ PLLR A+ D Sbjct: 121 TENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAAPDENL-PPLLREALQIMDS 179 Query: 190 AGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRK 222 + AF GL ++ G + + + G K Sbjct: 180 DDGEQAFLHGLESLIRGFEVQLTALLQIVGGDK 212
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.041 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%) Query: 48 LFIGILLPMFAGIALLANAIAWLNHRQWRRTALGTIG-PILVLAAVFLMRAYGWQSGGLL 106 LF I+L L N R T + TI P+++L ++ A+G+ L Sbjct: 344 LFEAIMLVFLVMYLFLQN---------MRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 107 YVGLALMVGVSVWDFI 122 G+ L +G+ V D I Sbjct: 395 MFGMVLAIGLLVDDAI 410
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.8 bits (66), Expect = 0.003 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 15/89 (16%) Query: 49 GYGLFDDTALQRLRFVRAAFEAGIGLDALARLCRALDAADGDGASAQLAVL--------- 99 Y F D ++ L AA+ + +A++ L ++ AS + A Sbjct: 172 AYMRFLDREMEGLT---AAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAA 228 Query: 100 ---RQLVERRREALASLEMQLAAMPTEPA 125 R+ E+ R+ A AMP + Sbjct: 229 EAKRKAEEQARQQAAIRAANTYAMPANGS 257
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 59.9 bits (145), Expect = 6e-12 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 2/146 (1%) Query: 36 AVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLFGPLSDRLGRRPVLLGGGLAYVVASM- 94 ++P + N ++ T +++ G ++G LSD+LG + +LL G + S+ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI 95 Query: 95 GLALTSSAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILGSMLAMVPAV 154 G S + + R +Q GA+A + V Y +E +G++GS++AM V Sbjct: 96 GFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 155 GPLLGALVDMWLGWRAIFAFLGLGMI 180 GP +G ++ ++ W + + +I Sbjct: 155 GPAIGGMIAHYIHWSYLLLIPMITII 180
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 232 bits (593), Expect = 1e-77 Identities = 60/292 (20%), Positives = 120/292 (41%), Gaps = 14/292 (4%) Query: 1 MKIVKRILLVLLSLFFTIVYSNAQTDNLTLKIENVLKAKNARIGVAIFNSNE-KDTLKIN 59 M+ ++ ++ LL+ V+++ Q E + R+G+ + + Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSE---SQLSGRVGMIEMDLASGRTLTAWR 57 Query: 60 NDFHFPMQSVMKFPIALAVLSEIDKGNLSFEQKIEITPQDLLPKTWSPIKEEFPNGTTLT 119 D FPM S K + AVL+ +D G+ E+KI QDL+ +SP+ E+ +T Sbjct: 58 ADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLV--DYSPVSEKHL-ADGMT 114 Query: 120 IEQILNYTVSESDNIGCDILLKLIGGTDSVQKFLNANHFTDISIKANEEQMHKDWNTQYQ 179 + ++ ++ SDN ++LL +GG + FL + E ++++ + Sbjct: 115 VGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDAR 174 Query: 180 NWATPTAMNKLLIDTYNNKNQLLSKKSYDFIWKIMRETTTGSNRLKGQLPKNTIVAHKTG 239 + TP +M L +Q LS +S + + M + ++ LP +A KTG Sbjct: 175 DTTTPASMAATLRKLLT--SQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG 232 Query: 240 TSGINNGIAAATNDVGVITLPNGQLIFISVFVAESKETSEINEKIISDIAKI 291 G A V ++ N + +++ ++ + + I+ I Sbjct: 233 A-----GERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAA 279
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 8e-04 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 105 PDFWGLGLGTELVSLVRDYLITDKAAQRLVLDPQSRNLRAIACYEKCGFEKLC 157 D+ G+GT L+ ++ + L+L+ Q N+ A Y K F + Sbjct: 99 KDYRKKGVGTALLHKAIEW-AKENHFCGLMLETQDINISACHFYAKHHF-IIG 149
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 483 bits (1245), Expect = e-173 Identities = 236/383 (61%), Positives = 288/383 (75%) Query: 3 SSAIIALLIVGLDAMGLGLIMPVLPTLLRELVPAEQVAGHYGALLSLYALMQVVFAPMLG 62 I+ L V LDA+G+GLIMPVLP LLR+LV + V HYG LL+LYALMQ AP+LG Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 63 QLSDSYGRRPVLLASLAGAAVDYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADST 122 LSD +GRRPVLL SLAGAAVDY IMA+AP LWVLYIGR+V+G+TGATGAVA + IAD T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 123 GEGSRARWFGYMGACYGAGMIAGPALGGMLGGISAHAPFIAAALLNGFAFLLACIFLKET 182 RAR FG+M AC+G GM+AGP LGG++GG S HAPF AAA LNG FL C L E+ Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 183 HHSHGGTGKPVRIKPFVLLRLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWN 242 H + + P R + + AL AVFFI+QL+GQVPAALWVI+GEDRF W+ Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 243 TATVGLSLAAFGATHAIFQAFVTGPLSSRLGERRTLLFGMAADATGFVLLAFATQGWMVF 302 T+G+SLAAFG H++ QA +TGP+++RLGERR L+ GM AD TG++LLAFAT+GWM F Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 303 PILLLLAAGGVGMPALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTALYSATAG 362 PI++LLA+GG+GMPALQAMLS V +QG LQG+L +LT+L+SI GPL FTA+Y+A+ Sbjct: 305 PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT 364 Query: 363 AWNGWVWIVGAILYLICLPILRR 385 WNGW WI GA LYL+CLP LRR Sbjct: 365 TWNGWAWIAGAALYLLCLPALRR 387
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 312 bits (800), Expect = e-111 Identities = 102/205 (49%), Positives = 138/205 (67%), Gaps = 2/205 (0%) Query: 1 MTKLDKGTVIAAALELLNEVGMDSLTTRKLAERLKVQQPALYWHFQNKRALLDALAEAML 60 M +L++ +VI AALELLNE G+D LTTRKLA++L ++QP LYWH +NKRALLDALA +L Sbjct: 1 MARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEIL 60 Query: 61 AERHTRSLPEENEDWRVFLKENALSFRTALLSYRDGARIHAGTRPTEPNFGTAETQIRFL 120 A H SLP E W+ FL+ NA+SFR ALL YRDGA++H GTRP E + T ETQ+RF+ Sbjct: 61 ARHHDYSLPAAGESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTVETQLRFM 120 Query: 121 CAEGFCPKRAVWALRAVSHYVVGSVLEQQASDADERVPDRPDVSEQAPSSFLHDLFHELE 180 GF + ++A+ AVSH+ +G+VLEQQ A DRP ++ L + ++ Sbjct: 121 TENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAAL--TDRPAAPDENLPPLLREALQIMD 178 Query: 181 TDGMDAAFNFGLDSLIAGFERLRSS 205 +D + AF GL+SLI GFE ++ Sbjct: 179 SDDGEQAFLHGLESLIRGFEVQLTA 203
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 63.4 bits (154), Expect = 5e-13 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 2/138 (1%) Query: 37 VPAMPGVLNTTPSIIQLTLSLYMVMLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGA 96 +P + N P+ + +M+ +G ++G LSD++G + +LL G S+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 ACSSTALAFVAF-RLVQAVGASAMLVATFATVRDVYANRPEGAVIYGLFSSMLAFVPALG 155 + + + R +Q GA A A V Y + +GL S++A +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGA-AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 156 PIAGALIGEFWGWQAIFI 173 P G +I + W + + Sbjct: 156 PAIGGMIAHYIHWSYLLL 173
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.2 bits (104), Expect = 8e-08 Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 31 QQVLEKAMLLFWEHGYEATSISDLTHALEITAPSLYSAFGDKAGLF 76 Q +L+ A+ LF + G +TS+ ++ A +T ++Y F DK+ LF Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 2e-06 Identities = 56/285 (19%), Positives = 102/285 (35%), Gaps = 23/285 (8%) Query: 54 VGTAGLIITVPGIMAAIAAPLLPVSVKQLDRRYVLILLTAIMVIANTITAFAENFHVLLL 113 G+++ + +M AP+L + RR VL++ A + I A A VL + Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI 101 Query: 114 SRLILGISIGGFWATAIALSGKLAPANLPIAKATAVVMAGVTFATVLGVPIGTWLSEFYG 173 R++ GI+ G A A A + + A+ + A F V G +G + + Sbjct: 102 GRIVAGIT-GATGAVAGAYIADITDGD-ERARHFGFMSACFGFGMVAGPVLGGLMGG-FS 158 Query: 174 WRSAFGITAAIGLVVLVLQLIFLP-------KLLPESAIHIRDLPALLRTPKARSGMLIV 226 + F AA+ + + LP + L A++ R + ++ V Sbjct: 159 PHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV 218 Query: 227 -LLIGLAHFCAYSYLAPFFKNVAGFNGTTISSLLLLYGIAGIFGNAFAG------YSGNL 279 ++ L + F ++ ++ TTI L +GI A Sbjct: 219 FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERR 278 Query: 280 NVRYTLAFVGTCFAIVFFG------FPIFAIHEFGAIVLTALWGF 318 + + GT + ++ F FPI + G I + AL Sbjct: 279 ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 57.1 bits (138), Expect = 7e-11 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 9/127 (7%) Query: 16 TILVTGAAGFIGSRLIVELLREGHQVIAALRNAATKKNKLLGFIATEGLVDPSISFVEYD 75 LVTGAAGFIG + LL GHQV+ + N + L E L P F + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVV-GIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 76 LSRDFKLDSLLSDAQTKIHVIYHLAA----SFNWGISKAEAERTNIKSGLALIEWAATLK 131 L+ + L + ++ ++ A A+ +N+ L ++E Sbjct: 61 LADREGMTDLFASGH--FERVFISPHRLAVRYSLENPHAYAD-SNLTGFLNILE-GCRHN 116 Query: 132 QLERFIW 138 +++ ++ Sbjct: 117 KIQHLLY 123
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 84.5 bits (209), Expect = 1e-18 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 15/233 (6%) Query: 725 QRYAKITILLKTGSN-----HRIKEILESLKTYMAGQLGDKAVVSFGGDVTQTIALTETM 779 + A + I L TG+N IK L L+ + G K + + D T + + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ--GMKVLYPY--DTTPFV---QLS 336 Query: 780 VHGKLMNILQISFAVFFISALVFRSISAGLIVLTPLLFSILAIFGVMGWLDIPLNIPNSL 839 +H + + + VF + L +++ A LI + +L F ++ +N Sbjct: 337 IHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF 396 Query: 840 ISAMAVGIGADYAIYFLYRLREILREEGGDIKDAIRKTLSTAGKASLFVATAVAGGYGVL 899 +A+G+ D AI + + ++ E+ K+A K++S A + +A ++ + + Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 900 SLSQG--FHVHQWLAMFIVIAMLFSVFATLIMVPTM-ILILKPRFIFSSNKKS 949 + G +++ ++ IV AM SV LI+ P + +LKP K Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKG 509 Score = 61.0 bits (148), Expect = 3e-11 Identities = 27/156 (17%), Positives = 63/156 (40%), Gaps = 10/156 (6%) Query: 792 FAVFFISALVFRSISAGLIVLTPLLFSILAIFGVMGWLDIPLNIPNSLISAMAVGIGADY 851 VF A ++ S S + V+ + I+ + + ++ + +G+ A Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 852 AIYFLYRLREILREEGGDIKDAIRKTLSTAGKASL--FVATAVAGGYGVL----SLSQGF 905 AI + ++++ +EG + +A A + L + T++A GVL S G Sbjct: 941 AILIVEFAKDLMEKEGKGVVEATLM----AVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 906 HVHQWLAMFIVIAMLFSVFATLIMVPTMILILKPRF 941 + + ++ M+ + + VP ++++ F Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCF 1032 Score = 40.6 bits (95), Expect = 5e-05 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 30/223 (13%) Query: 394 VLVIGLLHFEAFRSKQGLILPLVTALLAVAWGMGMMGLFKQPMDIFNSPTPILILAIAAG 453 V ++ L + R+ + + LL + G + +F ++LAI Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG-----MVLAIGLL 405 Query: 454 --HAVQLLKRYYEDFDRLIAQGMEPKAANSEAVVQSLVRVGPVMVLAGGIAAAGFFSLLT 511 A+ +++ ++ + PK EA +S+ ++ +V + +A F + Sbjct: 406 VDDAIVVVENVE---RVMMEDKLPPK----EATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 512 FNIPT---IRSFGIFTGIGIISTLVIEMTFIPALRSML--PPPSVTKVKRKGLPIW---- 562 F T R F I + ++++ + PAL + L P + + G W Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTT 518 Query: 563 -DWIPNRIGDV---ILSVRPRMMLMTAIAAMG---IFLAIGTS 598 D N + IL R +L+ A+ G +FL + +S Sbjct: 519 FDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSS 561 Score = 36.4 bits (84), Expect = 0.001 Identities = 32/204 (15%), Positives = 74/204 (36%), Gaps = 26/204 (12%) Query: 350 MGPINKIVESEQSK---DMTISVGGNPVYLDKAEDYSKRINILFPIAVLVIGLLHFEAFR 406 G ++E+ SK + G + + L I+ +V+ L + Sbjct: 836 SGDAMALMENLASKLPAGIGYDWTGMSYQERLSG---NQAPALVAISFVVVFLCLAALYE 892 Query: 407 SKQGLILPLVTALLAVAWGMGMMGLFKQPMDIFNSPTPILILAIAAGHAVQLLKRYYEDF 466 S + ++ L + + LF Q D++ + + ++A +A+ ++ +F Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV-----EF 947 Query: 467 --DRLIAQGMEPKAANSEAVVQSLVRVGPVMVLAGGIAAAGFFSLLTFNIPTIRSFGIFT 524 D + +G A A +R+ P+++ + A +L I G Sbjct: 948 AKDLMEKEGKGVVEATLMA---VRMRLRPILM----TSLAFILGVLPLAISNGAGSGAQN 1000 Query: 525 GI------GIISTLVIEMTFIPAL 542 + G++S ++ + F+P Sbjct: 1001 AVGIGVMGGMVSATLLAIFFVPVF 1024
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 26.9 bits (59), Expect = 0.008 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 12 IRTLVAKEMRVEPETIDPDQKFTSYGLDSIVALSVSGDLEDLTKL--ELEPTLLWDYPTI 69 IR +A+ ++ PE I + GLDS+ +++ +E + E+ L + PTI Sbjct: 235 IRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTL---VEQWRREGAEVTFVELAERPTI 291 Query: 70 NALAEYLVSELQQ 82 + L + QQ Sbjct: 292 EEWQKLLTTRSQQ 304
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 127 bits (320), Expect = 4e-39 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 5/156 (3%) Query: 14 NNFSEGLYTKFKSYRYRVFVEYLGWELNCPNNEELDQFDKVDTAYVVAQDRESNIIGCAR 73 SE + + R F + L W + C + E DQ+D +T Y+ ++ +I R Sbjct: 10 TLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIK-DNTVICSLR 68 Query: 74 LLPTTQPYLLGEIFPQLLNGMPIPCSPEIWELSRFSAVDFSNPPSSASQAVSSPVSIAIL 133 + T P ++ F + IP E SRF VD S P+S + Sbjct: 69 FIETKYPNMITGTFFPYFKEINIPEGN-YLESSRF-FVDKSRAKDILGNE--YPISSMLF 124 Query: 134 QEAINFAREQGAKQLITTSPLGVERLLRAAGFRAHR 169 IN+++++G + T + +L+ +G+ Sbjct: 125 LSMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRV 160
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.047 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 20/121 (16%) Query: 75 LGGLVFGHFGDKIGRKSMLLLTLMLMGIPTVLIGLLPTYESIGYWAAIGLVILRFIQGMA 134 +G V+G D++G K +LL +++ +V+ + ++ S+ L++ RFIQG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQG-- 114 Query: 135 MGGEWGGAVLMAV------EHAPEGGKGFWGSLPQASTG-----GGLMLASIALGLVSLL 183 G A++M V + G GS+ G GG++ I + L+ Sbjct: 115 AGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174 Query: 184 P 184 P Sbjct: 175 P 175
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.3 bits (65), Expect = 0.042 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 31 TQEWQDIVNPATQEVIGRVPFAT--VEEVDAAIQAAQD--AFASWRQTPIQARMRIMLKL 86 TQ +DIVN A + R P AT +AA+QA + A + + Sbjct: 91 TQRLKDIVNEALRHNASRTPSATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAF 150 Query: 87 QDLIRANMKEIAQVLTAEQGKTLADAEGDIQRGLEVVEHACSVGTLQ 133 Q+ + KEI + AE + L AE + +R + E A +V Q Sbjct: 151 QEAEQRR-KEIERE-KAETERQLKLAEAEEKRLAALSEEAKAVEIAQ 195
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 40.4 bits (94), Expect = 2e-06 Identities = 28/81 (34%), Positives = 38/81 (46%) Query: 7 IMNNNIIIFGYGTGISKAVAHKFGKEGYKIGLVARNAQKLEKAILELKAQGIEAYAFACD 66 I I G GI +AVA +G I V N +KLEK + LKA+ A AF D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 LAVLEDIPNLIKRIKDQLGEI 87 + I + RI+ ++G I Sbjct: 66 VRDSAAIDEITARIEREMGPI 86
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 34.0 bits (77), Expect = 5e-04 Identities = 25/112 (22%), Positives = 34/112 (30%), Gaps = 17/112 (15%) Query: 134 VDEQLTDITDEQEIESIETAINSSNKFSGTNIHLKAALSFLT--DRNKPDYRNSVKESIS 191 VDE I DEQ S T + ++ + L A T D D V S+S Sbjct: 81 VDETPPVINDEQ---STSTPLTTAQTMA-----LAAVADKNTTKDEKADDLNEDVTASLS 132 Query: 192 AVEALCVTLSGDPKATLGASLNS--IEKSHSLHPAFKKALTSLYGYTSDSDG 241 A+ A+ L G S + F K + D Sbjct: 133 ALFAM---LPGFDNTPKVTDAPSTVLPTEKPT--LFTKLTSEQLTTAQPDDA 179
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 32.8 bits (74), Expect = 0.002 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 232 LALYPLSAFRAMNK----AAETVYETLRKEGTQKNVVDIMQTRKEL 273 L LY F MNK E + E+L+KEG +K+ +D+++ K L Sbjct: 257 LELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKAL 302
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 75.6 bits (186), Expect = 6e-17 Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 25/231 (10%) Query: 286 VMVTGAGGSIGSELCRQIVKNQPKMLIIYEITEFALYSID-KELRLAAQCE--IVPILGT 342 +VTGA G IG + +++++ +++ I + ++ Y + K+ RL + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDY--YDVSLKQARLELLAQPGFQFHKID 60 Query: 343 VQDQQKLERIIEQYSVQTVYHAAAYKHVPLVECNPIAGLKNNAIGTANSLNAAVKKGVET 402 + D++ + + + V+ + V NP A +N G N L ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 403 FVLIST---------------DKAVRPTNVMGASKRMAELYCQAMAEAQKQTQISIVRFG 447 + S+ D P ++ A+K+ EL + + +RF Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG-LPATGLRFF 179 Query: 448 NVLGSSGS---VVPLFKQQIAKGGPITV-THPEVTRYFMTIPEASQLVIQA 494 V G G + F + + +G I V + ++ R F I + ++ +I+ Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 255 bits (652), Expect = 2e-85 Identities = 98/341 (28%), Positives = 163/341 (47%), Gaps = 30/341 (8%) Query: 19 LITGVAGFIGSNLLETLLKLNQNVIGLDNFATGHQYNLDEVETLVSSDQWKNFTFYNGDI 78 L+TG AGFIG ++ + LL+ V+G+DN + +L + + + F F+ D+ Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQ--PGFQFHKIDL 61 Query: 79 RNLEDCQKACAN--VDYVLHQAALGSVPRSIADPILTNSANITGFLNMLVAARDAQVKSF 136 + E A+ + V +V S+ +P +N+TGFLN+L R +++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 137 TYAASSSTYGDHPALP-KVEENIGNPLSPYAVTKYVNELYAEVFARTYGFKAIGLRYFNV 195 YA+SSS YG + +P ++++ +P+S YA TK NEL A ++ YG A GLR+F V Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 196 FGKRQDPNGAYAAVIPKWTAAMIQGDDVFINGDGETSRDFCYIENTVQANILAAVANDEA 255 +G P+ A K+T AM++G + + G+ RDF YI++ +A I A Sbjct: 182 YGPWGRPDMAL----FKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 256 KNQ----------------VYNVAVGDRTTLNDLFKAIKSALKENGISYDKEPVYREFRA 299 Q VYN+ L D +A++ AL GI K + Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDAL---GIEAKKN--MLPLQP 292 Query: 300 GDVRHSQADVTKIKTLLGYDPKFRIFEGISQAMVWYKHFLN 340 GDV + AD + ++G+ P+ + +G+ + WY+ F Sbjct: 293 GDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 28.0 bits (62), Expect = 0.017 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 3 EIIQPNEEIRITDGSKVDLHFSVAIENGVEIDNTRSREEPVSLTIGDGNLLPGFEKALLG 62 +II + V + ++ + +G D+T +P + + ++PG+ +AL Sbjct: 131 KIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVS--QVIPGWTEALQL 188 Query: 63 LRAGDRRTVHLPPEDAFGP 81 + AG V +P + A+GP Sbjct: 189 MPAGSTWEVFVPADLAYGP 207
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.4 bits (63), Expect = 0.034 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 18/73 (24%) Query: 84 AIRQKPTDIELVEDI------------RLPLQSGTIFARHYHPA------PNKKLPLIVF 125 IR L+EDI L +A+ H + + F Sbjct: 81 KIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHF 140 Query: 126 YHGGGFVVGGLDT 138 Y F++G +DT Sbjct: 141 YAKHHFIIGAVDT 153
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.002 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 14/116 (12%) Query: 21 ERLYDTSPEFGDGHDAIEQLEQDLQQYTTLYTAEFNTKIIGAIWC-SGQGESKVLEYIVV 79 E + P F D + ++ + IG I S ++E I V Sbjct: 39 EERFS-KPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAV 97 Query: 80 HPANRGRGVAERLVEEACRIEEAKGVK----------IFEPGCGAIHRCLAHIGKL 125 R +GV L+ +A IE AK I C + IG + Sbjct: 98 AKDYRKKGVGTALLHKA--IEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.011 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Query: 32 ETDIFRKVSQQDDLFLVAIKDEQLIG--TLMGGYDGHRGWINYLAVHPHQQRLGIATALV 89 + V ++ + + IG + ++G I +AV ++ G+ TAL+ Sbjct: 53 DDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNG-YALIEDIAVAKDYRKKGVGTALL 111 Query: 90 QQLEKRLMARGCPKLQLLVRKDNLNVLNFYEQLGY 124 + + L L + N++ +FY + + Sbjct: 112 HKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (252), Expect = 1e-26 Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 ILV DDD +RT+L + L G+ V+ +A+ + R + L+V D ++P E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVL---RR 138 + R++++ D P+++++A+ + I E GA DYLPKPF+ EL+ I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 139 QVREVPGAPSQQVEVV 154 + ++ + +V Sbjct: 125 RPSKLEDDSQDGMPLV 140
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.4 bits (247), Expect = 9e-27 Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 2/177 (1%) Query: 13 VQGKVILVTGASSGIGLTISNKLADAGAHVLLVARTQETLEEVKADIESRGGQASIFPCD 72 ++GK+ +TGA+ GIG ++ LA GAH+ V E LE+V + +++ A FP D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 73 LNDMEMIDQVSKEILASVDHIDILINNAGRSIRRAVHESYDRFHDFERTMQLNYFGAVRL 132 + D ID+++ I + IDIL+N AG +H D ++E T +N G Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSD--EEWEATFSVNSTGVFNA 123 Query: 133 VLNILPHMIQRKDGQIINISSIGVLANATRFSAYVASKAALDAFSRCLSAEVHAHKI 189 ++ +M+ R+ G I+ + S T +AY +SKAA F++CL E+ + I Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 40.6 bits (95), Expect = 4e-07 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 1 MRGIIPQEGFTLVELMVTIAVMAIIALMAAPS-MSNLLESKR 41 MR Q GFTL+E+MV I ++ ++A + P+ M N ++ + Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADK 42
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.3 bits (76), Expect = 5e-04 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 7 SNKEQGFTLIELIVALA-LGLILVAAATQLFIGGLLSSRLQKANAEIQ 53 ++K++GFTL+E++V + +G++ L G + QKA ++I Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLM-GNKEKADKQKAVSDIV 50
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 61.1 bits (148), Expect = 1e-14 Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 11 QGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTY 69 +GFTL+E+MVVIVI+ + AS+ +P+ +A A S+I+ L L+ +K N Y Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 58.4 bits (141), Expect = 8e-14 Identities = 19/62 (30%), Positives = 38/62 (61%) Query: 4 KNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRY 63 + GF+L+EIMVV+ I+ +LA++ P+ + K + S+++ + L+ K+ N+ Y Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66 Query: 64 PS 65 P+ Sbjct: 67 PT 68
>SECA#SecA protein signature. Length = 901 Score = 1218 bits (3153), Expect = 0.0 Identities = 532/910 (58%), Positives = 674/910 (74%), Gaps = 13/910 (1%) Query: 1 MLASLIGGIFGTKNERELKRMRKIVEQINALEPTISALSDADLSAKTPEFKQRYNNGESL 60 ML L+ +FG++N+R L+RMRK+V INA+EP + LSD +L KT EF+ R GE L Sbjct: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60 Query: 61 DKLLPEAFAVCREAAKRVMGMRHYDVQLIGGITLHEGKIAEMRTGEGKTLMGTLACYLNA 120 + L+PEAFAV REA+KRV GMRH+DVQL+GG+ L+E IAEMRTGEGKTL TL YLNA Sbjct: 61 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120 Query: 121 LSGEGVHVITVNDYLAQRDAELNRPLFEFLGLSIGTIYSMQEPAEKAAAYLADITYGTNN 180 L+G+GVHV+TVNDYLAQRDAE NRPLFEFLGL++G K AY ADITYGTNN Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180 Query: 181 EFGFDYLRDNMVFSLAEKKQRGLHYAIIDEVDSILIDEARTPLIISGQSEDSSHLYTAIN 240 E+GFDYLRDNM FS E+ QR LHYA++DEVDSILIDEARTPLIISG +EDSS +Y +N Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240 Query: 241 TIPPKLRPQK---EEKVADGGHFWIDEKQRSVEMTEIGYETVEQELIQMGLLAEGESLYS 297 I P L Q+ E GHF +DEK R V +TE G +E+ L++ G++ EGESLYS Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 298 ATNLNLVHHVSAAIRAHFLFQRDVHYIIHDGEVIIVDEHTGRTMPGRRWSEGLHQAVEAK 357 N+ L+HHV+AA+RAH LF RDV YI+ DGEVIIVDEHTGRTM GRRWS+GLHQAVEAK Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360 Query: 358 EGLAIQPENQTLATTTFQNYFRLYKKLSGMTGTADTEAAEMKEIYGLDVVIIPTHRPMIR 417 EG+ IQ ENQTLA+ TFQNYFRLY+KL+GMTGTADTEA E IY LD V++PT+RPMIR Sbjct: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420 Query: 418 NDQNDLIYLNRNGKYNAIIQEIMNIRQQGVAPILIGTATIEASEILSSKLKQAGIHHEVL 477 D DL+Y+ K AII++I +G P+L+GT +IE SE++S++L +AGI H VL Sbjct: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKG-QPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 478 NAKQHEREADIIAQAGSPNAVTIATNMAGRGTDIILGGNWKAKLAKLENPTPEDEARLKA 537 NAK H EA I+AQAG P AVTIATNMAGRGTDI+LGG+W+A++A LENPT E ++KA Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 538 QWEQDHEDVLQAGGLHIIGSERHESRRIDNQLRGRAGRQGDPGVSRFYLSLEDDLMRIFA 597 W+ H+ VL+AGGLHIIG+ERHESRRIDNQLRGR+GRQGD G SRFYLS+ED LMRIFA Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 598 GDRVVAMMRAMGLKEDEAIEHKMVSRSIENAQRKVEARNFDIRKNLLKYDDVNNEQRKII 657 DRV MMR +G+K EAIEH V+++I NAQRKVE+RNFDIRK LL+YDDV N+QR+ I Sbjct: 600 SDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAI 659 Query: 658 YSQRDEILAENTLQEYVEEMHREVMQAMIANFIPPESIHDQWDVEGLENALRIDLGIELP 717 YSQR+E+L + + E + + +V +A I +IPP+S+ + WD+ GL+ L+ D ++LP Sbjct: 660 YSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLP 719 Query: 718 VQEWLEQDRRLDEEGLVERISDEVIARYRQRRAQMGDESAAMLERHFVLNSLDRHWKDHL 777 + EWL+++ L EE L ERI + I Y+++ +G E E+ +L +LD WK+HL Sbjct: 720 IAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHL 779 Query: 778 AAMDYLRQGIHLRGYAQKNPEQEYKKEAFNLFVNMLGVIKTDVVTDLSRVHIPTPEELAE 837 AAMDYLRQGIHLRGYAQK+P+QEYK+E+F++F ML +K +V++ LS+V + PEE+ E Sbjct: 780 AAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEE 839 Query: 838 MEAQQQQQAEAMKLSFEHDDVDGLTGEVTASQEALNDSATEQQTFPVPESRNAPCPCGSG 897 +E Q++ +AE + +A+ AL E++ RN PCPCGSG Sbjct: 840 LEQQRRMEAER----LAQMQQLSHQDDDSAAAAALAAQTGERKV-----GRNDPCPCGSG 890 Query: 898 LKYKQCHGKI 907 KYKQCHG++ Sbjct: 891 KKYKQCHGRL 900
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 69/374 (18%), Positives = 133/374 (35%), Gaps = 46/374 (12%) Query: 64 LATFAIA-FIARPIGAALFGHLGDRIGRKATLVAALLTMGISTVCIGLLPTYAQIGIVAP 122 LA +A+ F P+ G L DR GR+ L+ +L + + P Sbjct: 49 LALYALMQFACAPVL----GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW------- 97 Query: 123 LLLALCRLGQGLGLGGEWSGAVLLATENAPEGKRA-WYGMFPQLGAPIGFILATGSFLLL 181 +L + R+ G+ G + A + +RA +G + A GF + G L Sbjct: 98 -VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGF---MSACFGFGMVAGPVLGG 152 Query: 182 SAAIPEQAFMQWGWRIPFIASAVLVIVG-LYIRLKLHETPAFQKVLDKQKEVN----IPF 236 + PF A+A L + L L E+ ++ +++ +N + Sbjct: 153 LMG-------GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRW 205 Query: 237 KEVVTKHTGKLILGTIAAICTFV---VFYLTTVFALNWGTTKLGYARGEFLELQLFATLC 293 +T + + I + V ++ + +W T +G + L F L Sbjct: 206 ARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGIS------LAAFGILH 259 Query: 294 FAAFIPLSAIFAEKFGRKATSIGVCIAAAIFGLFFSSMLESG-NTLIVFLFLCTGLAIMG 352 A ++ A + G + ++ + + A G + G + + L +G M Sbjct: 260 SLAQAMITGPVAARLGER-RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMP 318 Query: 353 LTYGPIGTVLSEIFPTSVRYTGSALTFNLAGIFGASFAPLIATKLAETYGLYAVGYYLTA 412 + + E ++ + +ALT +L I G PL+ T + G+ A Sbjct: 319 ALQAMLSRQVDEERQGQLQGSLAALT-SLTSIVG----PLLFTAIYAASITTWNGWAWIA 373 Query: 413 ASLLSLIAFLLIRE 426 + L L+ +R Sbjct: 374 GAALYLLCLPALRR 387
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 5e-06 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Query: 65 SVGRVAVLMPYRKQGIGKILMQHIIEYARQHKLPYLKLSAQTYVTA---FYEALGFKVQG 121 + +AV YRK+G+G L+ IE+A+++ L L Q + FY F + Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.9 bits (62), Expect = 0.006 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 20/86 (23%) Query: 2 LLQHIRD-------ILMSDKNSSESAILGWKFVLIVGVLSAIFLGFF-YLAMSNEPDYMP 53 LL I+ ++MS +N+ +AI A G + YL + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAI------------KASEKGAYDYLPKPFDLTELI 112 Query: 54 GAQRKAQQHEMQQKAEKSTDQQTQHD 79 G +A ++ ++ D Q Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQDGMP 138
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 26.8 bits (59), Expect = 0.050 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 16 LVILVIMSVIAIPLYHQFMASVELKNTPRILTIH 49 +L+ M + + LY+ M SVEL+ P L IH Sbjct: 424 FPLLIQMPIF-LALYYMLMGSVELRQAPFALWIH 456
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 141 bits (358), Expect = 2e-41 Identities = 88/365 (24%), Positives = 144/365 (39%), Gaps = 44/365 (12%) Query: 1 MKLSRIALATMLVAAPLAAANAGVTVTPLLLGYTFQDTQHNNGGKDGELTNGPELQDDLF 60 MK + IA+A L A A T H+ G + NGP ++ L Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINN---NGPTHENQLG 57 Query: 61 VGAALGIELTPWLGFEAEYN-----QVKGDVDGLAAGAEYKQKQINGNFYVTSDLITKNY 115 GA G ++ P++GFE Y+ KG V+ A A+ Q + +T DL Sbjct: 58 AGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDL----- 112 Query: 116 DSKIKPYVLLGAGHYKYEIPDLSY-HNDEEGTLGNAGVGAFWRLNDALSLRTEARGTYNF 174 Y LG ++ + Y N + G G + + ++ R E + T N Sbjct: 113 ----DIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNI 168 Query: 175 ------DEKFWNYTALAGLNVVLGGHLKPAAPVVEVAPVEPTPVAPQPQELTEDLNMELR 228 + N G++ G AAPVV AP V T+ ++ Sbjct: 169 GDAHTIGTRPDNGMLSLGVSYRFGQ--GEAAPVVAPAPAPAPEVQ------TKHFTLKSD 220 Query: 229 VFFDTNKSNIKDQYKPEIAKVAEKLSEY--PNATARIEGHTDNTGPRKLNERLSLARANS 286 V F+ NK+ +K + + + ++ +LS + + + G+TD G N+ LS RA S Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 287 VKSALVNEYNVDASRLSTQGFAWDQPIADNKT---------KEGRAMNRRVFATITGSRT 337 V L+++ + A ++S +G P+ N + A +RRV + G + Sbjct: 281 VVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKD 339 Query: 338 VVVQP 342 VV QP Sbjct: 340 VVTQP 344
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 163 bits (413), Expect = 4e-45 Identities = 98/442 (22%), Positives = 177/442 (40%), Gaps = 69/442 (15%) Query: 6 NLRNIAIIAHVDHGKTTLVDKLLQQSGALGDRAGEIER---VMDSNALESERGITILAKN 62 + NI ++AHVD GKTTL + LL SGA+ G +++ D+ LE +RGITI Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAI-TELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 63 TAITWLDKRTDTTYRINIVDTPGHADFGGEVERVMSMVDCVLLLVDSQEGPMPQTRFVTQ 122 T+ W + ++NI+DTPGH DF EV R +S++D +LL+ +++G QTR + Sbjct: 61 TSFQWEN------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 123 KAFARGLKPIVIINKVDKPSARPDWVIDQVFD-------------LFDNLGATD----EQ 165 G+ I INK+D+ V + + L+ N+ T+ EQ Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQ 174 Query: 166 LDFPIVYASGL--RGVAGPAP--EELAEDMT-----------------------PLFETI 198 D I L + ++G + EL ++ + L E I Sbjct: 175 WDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVI 234 Query: 199 VDIVEPPAVDVDGPFQMQISSLDYNSFVGVIGVGRIQRGSVKLNTPVTVIDKEGNTRNGR 258 + ++ ++Y+ + R+ G + L V + +KE + Sbjct: 235 TNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI----K 290 Query: 259 ILKIMGYHGLERIDVDSASAGDIVCITGIDALNISDTICDPKNVEALPPLSVDEPTVSMT 318 I ++ E +D A +G+IV + + L ++ + D K + + P + T Sbjct: 291 ITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTT 349 Query: 319 FQVNNSPFAGKEGKFVTSRNIRERLDRELIHNVALRVEDTDSPDRFKVSGRGELHLSVLI 378 + + + + + L LR + +S G++ + V Sbjct: 350 VEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKVQMEVTC 400 Query: 379 ENMRRE-GFELGVSRPQVIIKE 399 ++ + E+ + P VI E Sbjct: 401 ALLQEKYHVEIEIKEPTVIYME 422 Score = 39.1 bits (91), Expect = 4e-05 Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 406 EPYENVTFDVEEQHQGAVMEQMGHRKGEMTNMEVDGKGRIRIEATVPSRGLIGFRSEFLT 465 EPY + +++ + + ++ + + +P+R + +RS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTF 595 Query: 466 MTSGTGIMTSSFSHYGP 482 T+G + + Y Sbjct: 596 FTNGRSVCLTELKGYHV 612
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 128 bits (322), Expect = 4e-41 Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 10/142 (7%) Query: 1 MSIIQEFKEFAIKGNMMDLAIGVIIGGAFGKIVDSLVKDIIMPLITVITGGGVDFSQKFI 60 MSII+EF+EFA++GN++DLA+GVIIG AFGKIV SLV DIIMP + ++ GG+DF Q + Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLI-GGIDFKQFAV 59 Query: 61 VLGANPNNLQSLDALQKAGINVLTYGNFLTILINFLILAWVVFLMVKLLNKLRRDKNEPE 120 L DA V+ YG F+ + +FLI+A+ +F+ +KL+NKL R K EP Sbjct: 60 TLR---------DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPA 110 Query: 121 APAATPEDIQLLREIRDELKKQ 142 A A ++ LL EIRD LK+Q Sbjct: 111 AAPAPTKEEVLLTEIRDLLKEQ 132
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 785 bits (2030), Expect = 0.0 Identities = 286/1037 (27%), Positives = 497/1037 (47%), Gaps = 34/1037 (3%) Query: 5 RISVKYPVFTIMMMLSLMVLGLASWKRMTVEEFPNIDFPFVVVTTQYAGASPEAVESDIT 64 ++ P+F ++ + LM+ G + ++ V ++P I P V V+ Y GA + V+ +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 KKLEDQINTISGIKQITSRS-SEGLWMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEI 123 + +E +N I + ++S S S G + F T IA V++K+ E+ Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 DTPIVQRYDPSSSPIMSVVFESNSMSLAQ--LSSYVDKKIVPQLKTVSGVGNVNLLGDAK 181 + SSS +M F S++ Q +S YV + L ++GVG+V L G A+ Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQ 181 Query: 182 RQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTL------QQKNSELVVQIQSKVI 235 +RI + + L Y + VIN LK +N ++ AG L + + Q++ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 HPLGFGDLVI-ANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIQ 294 +P FG + + N +GS + LK VA VE A NG+ A + I ++ AN + Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 VVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGAVLAVLIVLLFLGS 354 L +L+ P G+ D++ ++ SI +VV+T+ E +L L++ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 FRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVVRENIVRH-T 413 R+T+I + +P+ LLGT + AFG+SIN +T+ + L+IGLL+DDAIVV EN+ R Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 414 ELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLIS 473 E A +I A++ + + AVF+P+AF GG G + QF +T+ +A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 MFISFTLDPMLSAHWKDPVKKKESRLQR-FFNYISNLLDGLTHIYEKLLKLALRFRFITV 532 + ++ L P L A PV + + FF + + D + Y + L + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 533 IIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQVDQII--RQ 590 +I + + + L + + F+P D+G + P ++ E TQ L QV + Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 591 FPDVVSTYGVVNSEVDSGKNHAGLG-VTLKPKQERSADLTTLNNEFRDRLQSVAGIRVTS 649 +V S + V +AG+ V+LKP +ER+ D + + IR Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 650 VAAAQDS------VSGGQKPIMISIKGSDLNELQKISDRFMTEMEK-IDGVVDLESSLKE 702 V + G +I G + L + ++ + + +V + + E Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 703 PKPTLGVHINRVLASDLGLSVSQIANAIRPLIAGDNVTTWEDRDGETYDVNIRLNENKRV 762 + +++ A LG+S+S I I + G V + D G + ++ + R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFRM 780 Query: 763 LPQDVQNLYLNSNKTNANGQNILVPLSAVATTQEKLGASQINRRDLEREVLIEAN-TSGR 821 LP+DV LY+ +ANG+ +VP SA T+ G+ ++ R + + I+ G Sbjct: 781 LPEDVDKLYV----RSANGE--MVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGT 834 Query: 822 PSGDIGQDIDKMQKAFKLPAGYTFDTQGANADMAESAGYALTAITLSIVFIYIVLGSQFN 881 SGD ++ + KLPAG +D G + S A + +S V +++ L + + Sbjct: 835 SSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 882 SFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGIIMLMGLVTKNAILLIDFIKKAM 941 S+ P ++M +PL ++GV LA LF +++ ++G++ +GL KNAIL+++F K M Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLM 952 Query: 942 E-DGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLALGLGEGGEQSAPMAHAVIGGVIT 1000 E +G +A L A + RLRPILMT+ A ++G++PLA+ G G + V+GG+++ Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 1001 STLLTLVVVPVIFTYLD 1017 +TLL + VPV F + Sbjct: 1013 ATLLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.0 bits (109), Expect = 2e-07 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 49/217 (22%) Query: 102 RLNNQDNAARLAQAQANLASAQAQAELARNLMNRKQRLLNQGFIARVEF---EQSQVDYK 158 LN A A + + + + ++ ++ LL++ IA+ E V+ Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 159 GQLESVRAQ-------------------------------QANVDIA------KKADRDG 181 +L ++Q Q +I K + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 182 ---IITSPISGVVTKRQV-EPGQTVSVGQTLFEIV-NPDQLEIQAKLPIEQQSALKVGSS 236 +I +P+S V + +V G V+ +TL IV D LE+ A + + + VG + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQN 385 Query: 237 IQYQI----QGNSKQLHAILTRISPVADQDSRQIEFF 269 ++ L + I+ A +D R F Sbjct: 386 AIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVF 422 Score = 37.1 bits (86), Expect = 9e-05 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 10/120 (8%) Query: 75 IQAQVSATATAVTANVGQKVQKGQVLVRLNNQDNAARLAQAQANLASAQAQAELARNLMN 134 I+ ++ + G+ V+KG VL++L A + Q++L A+ + + L Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 135 --RKQRLLNQGFIARVEFEQS--------QVDYKGQLESVRAQQANVDIAKKADRDGIIT 184 +L F+ K Q + + Q+ ++ R +T Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 13/212 (6%) Query: 106 LFIFFITLLFMNLTGATQDIATDALAVNLLQHDQQHWGNTFQVVGSRLGF-IVGGGAVLW 164 L++ +I + +TGAT +A +A ++ F + + GF +V G + Sbjct: 96 LWVLYIGRIVAGITGATGAVAGAYIADITDGDERARH---FGFMSACFGFGMVAGPVLGG 152 Query: 165 CLDWLSWQPTFLLLAALVFIN-TLPILLFKEPSHTSHSPHQYSQPSLVTKIKAYLGYFSQ 223 + S F AAL +N L E P + + + + G Sbjct: 153 LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGM--- 209 Query: 224 NKELRSWLIVLITFKVADGLAGPLLKPLMVD-MGLSFTQIGIYITMLGAVAALLGALIAG 282 + + + V ++ + L D T IGI + G + +L A+I G Sbjct: 210 -TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 283 WMLKHFSRSTALMTFSILKIMSLGGYAYLAYA 314 + ALM ++ + GY LA+A Sbjct: 269 PVAARLGERRALM-LGMIADGT--GYILLAFA 297
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 33.8 bits (77), Expect = 0.001 Identities = 14/41 (34%), Positives = 17/41 (41%) Query: 52 VQEQRQVQQQQQQVQQQQQVQLAEVKAQPQPVAAPASPLAG 92 + + Q QQ Q Q Q Q A+ AQ AA L G Sbjct: 330 IHLNFVMPPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNG 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%) Query: 2 TKILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGM 61 IL+ +DD I L ++V +N +A DL++ D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QVLKQIRQRAA-TPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARI-HALLRRS 119 +L +I++ PVL++SA++ + GA DYL KP++ EL+ I AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 GVEAQLASQDQ 130 ++L Q Sbjct: 124 RRPSKLEDDSQ 134
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 28.8 bits (64), Expect = 0.025 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 23/102 (22%) Query: 153 LPFAIFALAAIIRRGLKPIDDFKNELKE-------RDS---------EELTPIEVHDYPQ 196 LP A+ +A IR +NEL + +DS LTP E+ Sbjct: 25 LPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTP-ELKASMD 83 Query: 197 ELLPTIDEMNRLFERISKAQNEQKQFIADAAHELRTPVTALN 238 EL + M +R A + +K +D AH + PV N Sbjct: 84 ELRQAAESM----KRSYVANDPEKA--SDEAHTIHNPVVKDN 119
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.004 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 111 GGIAERAKMRSQAIATLALVALVYP---FFEGMVWNGNYGLQKWLETTFGAAFHDFAGSV 167 G A+ QAI A + V+P + + W+ L+KWL G D+ Sbjct: 510 GTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRR 569 Query: 168 V--VHAMGGWIALAAV 181 + + +G +I + V Sbjct: 570 LRYLQLVGKYILMGHV 585
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.021 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 1/95 (1%) Query: 124 QQHAGESVKKNKKAQPIEFEYEENADKGSEFEEEFEKYAAEQQQAREQAKQQRQQQKREQ 183 +S + K+ Q E + +K + + E EK + + + +Q Q + + Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 184 AEQMAAQSLKTVYLKIAAMIHPDREQDETKKEEKT 218 + A ++ TV +K + D + ++T Sbjct: 1142 QAEPARENDPTVNIKEPQS-QTNTTADTEQPAKET 1175
>PF04647#Accessory gene regulator B Length = 212 Score = 25.9 bits (57), Expect = 0.050 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 11/88 (12%) Query: 39 VVAVAYAFSPIDLIPDFIPILGFIDDAVILPILIWLAVRFTPQQVIFDAEQQAKEWLDEH 98 +V A+ + P + +L I L L++L P+ +I Sbjct: 86 LVFNVLAYIAHLIDPAYFQLLILIAFITSLLALLFLVPVDNPRNLI-----------SNT 134 Query: 99 EKRPKNYLVAVLIILIWLTLAVMAYFYF 126 E+R L +++++ ++ AY + Sbjct: 135 EQRKTLKLKTSMVLMVLFGGSIGAYRLY 162
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.5 bits (185), Expect = 2e-17 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 23/262 (8%) Query: 220 AKPLAGKTALVTGASRGIGEAIAHVLARDGAHVICLD-VPQQQADLDRVAADIGGSTLAI 278 AK + GK A +TGA++GIGEA+A LA GAH+ +D P++ + A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 279 DITAADAG---EKIKAAAAKQGGLDIIVHNAGITRDKTLANMKPELWDLVININ----LS 331 D+ E + G +DI+V+ AG+ R + ++ E W+ ++N + Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 332 AAERVNDYLLENDGLNANGRIVCVSSISGIAGNLGQTNYAASKAGVIGLVKFTA-PILKN 390 A+ V+ Y+++ G IV V S YA+SKA + K + + Sbjct: 123 ASRSVSKYMMDRRS----GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 391 GITINAVAPGFIETQMTAAIPFAIREAGRRMNS----------MQQGGLPVDVAETIAWF 440 I N V+PG ET M ++ A + + +++ P D+A+ + + Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 441 ASTASTGVNGNVVRVCGQSLLG 462 S + + + + V G + LG Sbjct: 239 VSGQAGHITMHNLCVDGGATLG 260
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.2 bits (130), Expect = 2e-11 Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 12/169 (7%) Query: 5 NRDQRREMILQAAMQIALAEGFTAMTVRRIATEAQTSTGQVHHHFSSASHLKAEAFLKLM 64 + R+ IL A+++ +G ++ ++ IA A + G ++ HF S L +E + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 EQLDEIEQTL----------QTTSQFQRLFILLGAENIDRLQPYLRLWNEAELLIEQDIE 114 + E+E + E RL + + + + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRL--LMEIIFHKCEFVGEMAV 125 Query: 115 IQKAYNLAMQSWHQAIVQSIECGQKEGEFKNRSNSTDIAWRLIAFVCGL 163 +Q+A + I Q+++ + + A + ++ GL Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 259 bits (664), Expect = 1e-83 Identities = 90/419 (21%), Positives = 190/419 (45%), Gaps = 13/419 (3%) Query: 7 ILTIIVLIYLPVTIDATVMHVATPSLSAALNLTANQLLWIIDIYSLIMAGLILPMGALGD 66 IL + ++ ++ V++V+ P ++ N W+ + L + G L D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 67 RIGFKKLLFIGTAVFGVGSLAAAFSPTAYA-LIASRAILGLGAAMLIPATLSGIRNAFTE 125 ++G K+LL G + GS+ + ++ LI +R I G GAA PA + + + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIP 133 Query: 126 EKQRNFALGIWSTVGGGGAAFGPLVGGFVLEHFHWGAVFLINIPIILAVLVMIVMIIPKQ 185 ++ R A G+ ++ G GP +GG + + HW +L+ IP+I + V +M + K+ Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKK 191 Query: 186 QEKTDQPINLGQALVLVVAILSLIYSIKSAMYNFSVLTVVMFVVGISTLIHFIRSQKRAT 245 + + ++ +++ V I+ + S +F +++V+ F++ F++ ++ T Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLI-------FVKHIRKVT 244 Query: 246 TPMIDLELFKHPVISTSIVMAVVSMIALVGFELLLSQELQFVHGFSPLQA-AMFIIPFMI 304 P +D L K+ ++ + + GF ++ ++ VH S + ++ I P + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 305 AISLGGPLAGICLNKWGLRRVSSLGILVSALSLWGLAQLNFSTDHFLAWTCMVFLGFSIE 364 ++ + G + GI +++ G V ++G+ ++S + L +T F+ + LG Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 365 IALLASTAAIMSSVPPQKASAAGAIEGMAYELGAGLGVAIFGLMLSWFYSRSIILPAEL 423 + ST S + + + ++ L G G+AI G +LS +LP E+ Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSF-LSEGTGIAIVGGLLSIPLLDQRLLPMEV 422
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 60.0 bits (145), Expect = 4e-12 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%) Query: 394 PISAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPN 453 P AVQP +VEPEPEPEP PEP P +P+P+P+P+P+P + + QP Sbjct: 57 PPQAVQPPP----EPVVEPEPEPEPIPEPPK-EAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 454 QDLMVFDPN 462 +D+ + Sbjct: 112 RDVKPVESR 120 Score = 55.8 bits (134), Expect = 1e-10 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Query: 399 QPVEVISQPAMVEPEPEPEPEPEP---EPEPEPEPEPEPEPE---PEPEPEPEPEPEPQP 452 QP+ V P+ P EPEPEPEP PEP E +P+P+P+P+P+P Sbjct: 43 QPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 102 Score = 41.5 bits (97), Expect = 6e-06 Identities = 9/58 (15%), Positives = 22/58 (37%) Query: 391 EITPISAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 448 + +P+P+P+P+P+P + + +P+ + +P P Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124 Score = 37.7 bits (87), Expect = 9e-05 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 20/92 (21%) Query: 426 PEPEPEPEPEPEPEP---EPEPEPEPEPQPNQDLMVFDPNHHELIGLESAVVQETVSVLE 482 P P+ P EPEPEPEP P+P + A V + Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP----------------KEAPVVIEKPKPK 95 Query: 483 EDFIPVPEQKLVQVQAETQVRQIEPEPASTAE 514 P P +K VQ Q + V+ +E PAS E Sbjct: 96 PKPKPKPVKK-VQEQPKRDVKPVESRPASPFE 126
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 62.4 bits (151), Expect = 1e-13 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 4/189 (2%) Query: 3 KTILITGASSGLGAGMAHEFAAKGYNLAICARRLDRLETLKTELENEYGIKVIAKSLDVT 62 K ITGA+ G+G +A A++G ++A ++LE + + L+ E A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVR 67 Query: 63 NYDQVFEVFRAFKQEFGYLDRIIVNAGVGNGRRIGKGNFEINRATAETNFISALAQCEAA 122 + + E+ ++E G +D ++ AGV I + E AT N + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 123 IEIFRAQNAGHLVVMSSMSAMRGLPK-HLSTYAASKAAVAHLAEGIRAELLDTPIKVSTI 181 + + +G +V + S A G+P+ ++ YA+SKAA + + EL + I+ + + Sbjct: 128 SKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 182 FPGYIRTEM 190 PG T+M Sbjct: 186 SPGSTETDM 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.4 bits (123), Expect = 4e-09 Identities = 75/405 (18%), Positives = 153/405 (37%), Gaps = 43/405 (10%) Query: 25 LCMLAYIFSFIDRQILALMIEPIKADLQLSDTQFSLLHGLAFSLFYAVMGLPLAYIADRF 84 LC+L++ FS ++ +L + + I D + ++ AF L +++ ++D+ Sbjct: 19 LCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVN-TAFMLTFSIGTAVYGKLSDQL 76 Query: 85 SRPKLISIGIIVWSLATATCGLSKNFIQ-LFLSRMAVGVGEAALSPAAYSMFSDMFSKDK 143 +L+ GII+ + + +F L ++R G G AA + + K+ Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 144 LGRAVGIYSIGAFLGGGIAFLVGGYVIN--------LLKGVTLIEVPLLGAL----KAWQ 191 G+A G+ +G G+ +GG + + L+ +T+I VP L L + Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIK 196 Query: 192 IAFLVVGLPGIIIGLLFILTVKDPARKGQQLNQSGQVDQVKFTQCLQFIKKHAKTFACHY 251 F + G+ + +G++F + + V + F ++ I+K F Sbjct: 197 GHFDIKGIILMSVGIVFFMLFTTSYSISFLI-----VSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 252 LGFTFYAM-----------ALYSLTSWTPAFYIRKFQLAPTETGYMLGTILLVANTLGVF 300 LG M + S P QL+ E G ++ ++ + + Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 301 CAGWLNDWFTKKGRQDAPMFTGVIGIVGLIIP---IAFFTQTDQLWLSVTLLIPAMFFAS 357 G L D P++ IG+ L + +F +T ++++ ++ + Sbjct: 312 IGGILVDRR-------GPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 358 FPLVISATALQMLAPNQFRARLSALFLLVSNLIGLGVGTTLVAII 402 VIS L + A +S L + + G G +V + Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFT--SFLSEGTGIAIVGGL 407
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.022 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%) Query: 64 IDNTRRKIILSTNALGEASITDIANLSTLKLTTATKAVYRLVEDGIVEVYSSTADERISM 123 ID R +I+S A + + N L K + + DE+ Sbjct: 216 IDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEG----HFSVDEKSRQ 271 Query: 124 VKLTAKGVELVEQINQISVVTLAGILNAFSE---DELHNLNHQLK 165 V LT +G+ L+E++ + G + +S +H++ L+ Sbjct: 272 VNLTERGLVLIEELLVKEGIMDEGE-SLYSPANIMLMHHVTAALR 315
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 27.2 bits (60), Expect = 0.040 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%) Query: 71 DSWQSIYDMFKRYTQKESHFVMNAHFVN 98 +SW + D+ R Q E N F Sbjct: 166 ESWTQVIDLRPRLGQIE----TNPQFAQ 189
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 5e-06 Identities = 82/432 (18%), Positives = 151/432 (34%), Gaps = 77/432 (17%) Query: 8 RHSWVSLVICWIIWVVVAYDRELIFRAANMICNEFNLSPTQWGYTIAAITLSLAVLSIPV 67 RH+ + + +C + + V + ++ + I N+FN P + A L+ ++ + Sbjct: 11 RHNQILIWLCILSFFSV-LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 68 AALSDKHASGWKRGIFQWPLVIGFTFISLLSGITSLSSSFYKFVTL-RIMVSLGCGVAEP 126 LSD+ G KR L+ G S I + SF+ + + R + G Sbjct: 70 GKLSDQL--GIKR-----LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA 122 Query: 127 VGVSNTAEWWPKEHRGFAIG--------------------AHHSGYPVGALLSGVAMATI 166 + + A + PKE+RG A G AH+ + L+ + + T+ Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITV 182 Query: 167 IT--YFGPQNWRYAF---FLGIIFAVPALTFWAIYSTRKRYSEF------------HQSC 209 + R GII + F+ +++T S H Sbjct: 183 PFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRK 242 Query: 210 VDNQFTPPTDFVHDEGEEKTSTHSTWERLKQTLSSRGIVFTAASTLITHVVYIGFLTIFP 269 V + F P + + I GF+++ P Sbjct: 243 VTDPFVDPGLGKN----------------------IPFMIGVLCGGIIFGTVAGFVSMVP 280 Query: 270 AFLYNIVGLDLAKSAGLSAVF--TITGMMGQIIWPTLSDKIGRRLTLILCGCWMAVS--I 325 + ++ L A G +F T++ ++ I L D+ G L + +++VS Sbjct: 281 YMMKDVHQLSTA-EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLT 339 Query: 326 ASFCL--TSGVVSVIAIQLFFGLSANAIWPIFYATASDYAPAGAIGTANSLITVAQYVGG 383 ASF L TS +++I + + GLS + S G SL+ ++ Sbjct: 340 ASFLLETTSWFMTIIIVFVLGGLSFTKT--VISTIVSSSLKQQEAGAGMSLLNFTSFLSE 397 Query: 384 AVAPIIMGYLLT 395 I+G LL+ Sbjct: 398 GTGIAIVGGLLS 409 Score = 31.4 bits (71), Expect = 0.007 Identities = 42/185 (22%), Positives = 66/185 (35%), Gaps = 20/185 (10%) Query: 261 YIGFLTIFPAFLYNIVGLDLAKSAGLS--------AVFTITGMMGQIIWPTLSDKIG-RR 311 + F ++ + N+ D+A F +T +G ++ LSD++G +R Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 312 LTLILCGCWMAVSIASFCLTSGVVSVIAIQLFFGLSANAIWPIFYATASDYAPAGAIGTA 371 L L S+ F S +I + G A A + + Y P G A Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 372 NSLITVAQYVGGAVAPIIMGYLLTSFGGWHSHQGYIWCFLLMSCCAFIGVILQIILGYLI 431 LI +G V P I G + W +LL+ I +I L L+ Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIH---------WSYLLL--IPMITIITVPFLMKLL 189 Query: 432 KKEKS 436 KKE Sbjct: 190 KKEVR 194
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 122 bits (307), Expect = 4e-33 Identities = 62/408 (15%), Positives = 132/408 (32%), Gaps = 84/408 (20%) Query: 27 WVMVIAFIIVLVSILWILKVIFLPSSIVKTDDARVDV--EYSTIAPKVSGNIEEIYIKDH 84 ++A+ I+ ++ + + IV T + ++ I P + ++EI +K+ Sbjct: 56 RPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 85 QTVKKGQLLARIDARDYQAALAEAESNYAKAQAD-------------------------- 118 ++V+KG +L ++ A +A + +S+ +A+ + Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 119 ---------------LNEAMLAVERQPTVIRET-----------EAQLRKVEAGIKLTKD 152 + E + Q A++ + E ++ K Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 153 NTARYEQLQALGAESRLITQQSKTTLTEQYADLDSSKEKVIDAQYQLNQYK---IQVQAK 209 + L A ++ + + E +L K ++ + ++ K V Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 210 ------------QAALKQAQAALDKAKLNLSYTEIRAPIDGMIGQKSAN-VGNFVGAGNP 256 + L K + + IRAP+ + Q + G V Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 257 LMVVVPLDQVY-VEANFREIELKQIKIGQPVTVYVDAYNV----ELKGVVDSFSPSTGAF 311 LMV+VP D V A + ++ I +GQ + V+A+ L G V + + Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA--- 412 Query: 312 FSPISATNATGNFTKIVQRLPLRIKLLENQPDIKLLRPGLSVVVSVDT 359 G ++ + L +I L G++V + T Sbjct: 413 ----IEDQRLGLVFNVIISIEENC-LSTGNKNIP-LSSGMAVTAEIKT 454
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.5 bits (118), Expect = 2e-08 Identities = 59/334 (17%), Positives = 113/334 (33%), Gaps = 18/334 (5%) Query: 22 NNRISSITLVDIRGEMGISVDSGYWVSSIYASAMIIGMILSTSWAVIFSMRRVLLFAIGL 81 N + +++L DI + S WV++ + IG + + ++R+LLF I + Sbjct: 29 NEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIII 88 Query: 82 CLFSSVLIPFSPN-IEIFYLLRGLQGLANGLTIPLLMACALRFLGPEIRLWGLACYALTA 140 F SV+ + + + R +QG L+M R++ E R Sbjct: 89 NCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIV 148 Query: 141 TFFPNLSAALAAFYLDVIGWKMIFFQTIPFCALSAALVYFGIPQDPLNYSRIKTYDWTGA 200 + A+ I W + ++ V F + +D G Sbjct: 149 AMGEGVGPAIGGMIAHYIHWSYLLL----IPMITIITVPFLMKLLKKEVRIKGHFDIKGI 204 Query: 201 ILAIIGLASLSTMLLHGNHLDWFHSKLICVLALMSAITLPLFLIHEWRYPTPLIKPQMLE 260 IL +G+ +L ++S ++ +F+ H + P + P + + Sbjct: 205 ILMSVGIV---FFMLFTTSYSISF-------LIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 261 IRNFGYAVI-ALFCFVVIGMSTSTLPLNYLSAVHGYKPTQTMWIGLQIAALQFIYIPIVI 319 F V+ F + S +P + VH + + + + I + Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPY-MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 320 KVLNQAWVDSRYVHGFGLLLVMVGCLGASQLDTT 353 +L YV G+ + V L AS L T Sbjct: 314 GILVDR-RGPLYVLNIGVTFLSVSFLTASFLLET 346
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 77.0 bits (189), Expect = 1e-19 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 4/158 (2%) Query: 12 QKILDAATKFFLIHGFSGTTTDMIQKEAGVSKATMYGCFKNKEAMFAAVIERQCTNMQKQ 71 Q ILD A + F G S T+ I K AGV++ +Y FK+K +F+ + E +N+ + Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 72 IM-SVETKAKNLRSALTEIGKTYLCFILSHSGLAFFRVCI---AEAVRFPELSEKFFEVG 127 + + S L EI L ++ I E V + ++ Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 128 PQRLANIIAGYLEKSIKQGEIELTSSSEVAANIFLSLL 165 + I L+ I+ + + AA I + Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 82.1 bits (203), Expect = 7e-20 Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 35/223 (15%) Query: 1 MNVLITGGTGFIGKQIAKEILKTGSLTLDGKQAKPIDKIILFDAF----------AGDDL 50 M L+TG GFIG ++K +L+ G +++ D A +L Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG------------HQVVGIDNLNDYYDVSLKQARLEL 48 Query: 51 PQDPKIEVVIGDITDKTTVANI--TEKIDVVWHLA--AVVSSAAEADFDLGMDVNLYGLL 106 P + D+ D+ + ++ + + V+ V + E + D NL G L Sbjct: 49 LAQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTGFL 107 Query: 107 NLLEELRKKQTMPRVIFASGCAVFGG--QLPEVVTDDTVVTPKSSYGMQKAVGELLVSDY 164 N+LE R + + +++AS +V+G ++P TDD+V P S Y K EL+ Y Sbjct: 108 NILEGCRHNK-IQHLLYASSSSVYGLNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTY 165 Query: 165 SRKGFIDGRVLRLPTIVVRPGKPNKAASTFFSSIIREPLKGET 207 S + LR T+ G+P+ A F ++ L+G++ Sbjct: 166 SHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAM----LEGKS 204
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.3 bits (237), Expect = 1e-24 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 ILV +DD I ++ L R G V N A+ DL++ D+ +P+ N +++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 75 LNKIRQ-KAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131 L +I++ + PV++++A + + + A GA D++ KPF+ E++ + L + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 2e-09 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 19/196 (9%) Query: 58 VHAFRTAEIRPQVGGIIEKVLFKQGSEVRAGQALYKINSETFEADVNSNRASLNKAEAEV 117 H+ R+ EI+P I+++++ K+G VR G L K+ + EAD ++SL +A E Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 118 ARLKVQLERYEQ----------LLPSNAVSKQEVSNAQAQYRQALADVAQMKAL--LARQ 165 R ++ E VS++EV + ++ + K L Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 166 NLNLQYATVRAPISGRIGQSFVTEG------ALVGQGDTNTMATIQQIDKVYVDVKQSVS 219 + TV A I+ S V + +L+ + A ++Q +K YV+ + Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK-YVEAVNELR 269 Query: 220 EYERLQAALQSGELSA 235 Y+ ++S LSA Sbjct: 270 VYKSQLEQIESEILSA 285 Score = 50.6 bits (121), Expect = 6e-09 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 49/216 (22%) Query: 100 EADVNSNRASLNKAEAEVARLKVQLERYEQLLPSNAVSKQEVSNAQAQYRQALADVAQMK 159 ++ ++ L + E+E+ K + + QL K E+ + RQ ++ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLF------KNEIL---DKLRQTTDNIGLLT 315 Query: 160 ALLARQNLNLQYATVRAPISGRIGQ-SFVTEGALVGQGDT-------------NTMATIQ 205 LA+ Q + +RAP+S ++ Q TEG +V +T + + Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNK 375 Query: 206 QIDKVY----VDVKQSV---SEYERLQAALQSGELSANSDKTVRITNSHGQPYNVTAKML 258 I + +K + Y L +++ L A D+ + G +NV + Sbjct: 376 DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRL------GLVFNVIISI- 428 Query: 259 FEDINVDPETGDVTFRIEVNNTERKLLPGMYVRVNI 294 + N L GM V I Sbjct: 429 ------------EENCLSTGNKNIPLSSGMAVTAEI 452
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1059 bits (2740), Expect = 0.0 Identities = 500/1028 (48%), Positives = 701/1028 (68%), Gaps = 9/1028 (0%) Query: 2 MSQFFIRRPVFAWVIAIFIIIFGLLSIPKLPIARFPSVAPPQVNISATYPGATAKTINDS 61 M+ FFIRRP+FAWV+AI +++ G L+I +LP+A++P++APP V++SA YPGA A+T+ D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 62 VVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQNKIKAVEARLPQ 121 V +IE+ ++G+ NL+Y S+T+D++G+ IT TF+ GTD ++AQV VQNK++ LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 VVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKRVEGVGKVQSFGA 181 V+QQG+ VE SSS +LM+ G S N ++ D+SDY+ NV + L R+ GVG VQ FGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKGQLITIPLSAQGQL 241 + AMRIW+D + L Y L+ DV N ++ N +IA G+LG PA GQ + + AQ + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 242 SSLEQFKNISLKSKTNGSVIKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAV 301 + E+F ++L+ ++GSV++L DVA VE+G + YN NGKPA I+L+ GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 302 KTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLH 361 TA+ ++AK+ EL+ P+GM+ PYDT PFV++SI +V+ TL EA++LVF+VMYLFL Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 362 NVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENVERIM 421 N+R TLIP I P+ LLGTF ++ G+SIN LTMFGMVLAIG++VDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 422 ATEGLSPKDATSKAMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILF 481 + L PK+AT K+M +I ++GI +VL+AVF+PMAF GS G IY+QF++T+ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 482 SALLALILTPALCATILKPIDGHHQ--KKGFFAWFDRSFDKVTKKYELMLLKIIKHTVPM 539 S L+ALILTPALCAT+LKP+ H K GFF WF+ +FD Y + KI+ T Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 MVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQLPSDATAERTRNVVNQFENNLKDN 599 ++I+ +I P++F+PEEDQG F+T QLP+ AT ERT+ V++Q + N Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 600 --PDVKSNTAILGWGFSGAGQNVAVAFTTLKDFKERTS---SASKMTSDVNSSMANSTEG 654 +V+S + G+ FSG QN +AF +LK ++ER SA + + +G Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 655 ETMAVLPPAIDELGTFSGFSLRLQDRANLGMPALLAAQDELMAMAAKN-KKFYMVWNEGL 713 + PAI ELGT +GF L D+A LG AL A+++L+ MAA++ V GL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 714 PQGDNISLKIDREKLSALGVKFSDVSDIISTSMGSMYINDFPNQGRMQQVIVQVEAKSRM 773 L++D+EK ALGV SD++ IST++G Y+NDF ++GR++++ VQ +AK RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 774 QLKDILNLKVMGSSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAM 833 +D+ L V ++G++V S T W + RYNG PS+ I G TSSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 834 REMEQLIAKLPKGIGYEWTGISLQEKQSESQMAFLLGLSMLVVFLVLAALYESWAIPLSV 893 ME L +KLP GIGY+WTG+S QE+ S +Q L+ +S +VVFL LAALYESW+IP+SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 894 MLVVPLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK-MLKEEGMSLI 952 MLVVPLGI G ++A NDV+F +GL+T IGLSAKNAILIVEFAK ++++EG ++ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 953 EATVAAAKLRLRPILMTSLAFTCGVIPLVIATGASSETQHALGTGVFGGMISATILAIFF 1012 EAT+ A ++RLRPILMTSLAF GV+PL I+ GA S Q+A+G GV GGM+SAT+LAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1013 VPVFFIFI 1020 VPVFF+ I Sbjct: 1021 VPVFFVVI 1028 Score = 89.1 bits (221), Expect = 4e-20 Identities = 52/323 (16%), Positives = 128/323 (39%), Gaps = 13/323 (4%) Query: 723 IDREKLSALGVKFSDVSDIISTS---MGSMYINDFPNQGRMQQVIVQVEAKSRMQ-LKDI 778 +D + L+ + DV + + + + + P QQ+ + A++R + ++ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG-QQLNASIIAQTRFKNPEEF 246 Query: 779 LNLKVMGS-SGQLVSLSEVVTPQWNKAPQQYN-RYNGRPSLSIAGIPNFDTSSGEA---- 832 + + + G +V L +V + R NG+P+ + ++ + Sbjct: 247 GKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAI 306 Query: 833 MREMEQLIAKLPKGIGYEWT-GISLQEKQSESQMAFLLGLSMLVVFLVLAALYESWAIPL 891 ++ +L P+G+ + + + S ++ L ++++VFLV+ ++ L Sbjct: 307 KAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATL 366 Query: 892 SVMLVVPLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVE-FAKMLKEEGMS 950 + VP+ + G + + G + G++ IGL +AI++VE +++ E+ + Sbjct: 367 IPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLP 426 Query: 951 LIEATVAAAKLRLRPILMTSLAFTCGVIPLVIATGASSETQHALGTGVFGGMISATILAI 1010 EAT + ++ ++ + IP+ G++ + M + ++A+ Sbjct: 427 PKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL 486 Query: 1011 FFVPVFFIFILGAVEKLFSSKKK 1033 P +L V K Sbjct: 487 ILTPALCATLLKPVSAEHHENKG 509
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.0 bits (158), Expect = 3e-15 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 6 RRPKHDPKVSENEILNAAEQFLSEHPFRELNVDEVMRRTGLKRPAFYVHFRDKHDLALRL 65 R+ K + + + IL+ A + S+ ++ E+ + G+ R A Y HF+DK DL + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 66 VENIGKELFTIADRWL--KGNNSQEDLRQALVGLVEVYVQHGRVLRAFG------EAAGG 117 E + + + + LR+ L+ ++E V R E G Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 118 DERVDNAYRSLVQDFINAAAQHIKEEQEAGRIKKDLDVEETA 159 V A R+L + + Q +K EA + DL A Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.3 bits (76), Expect = 0.003 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 11/122 (9%) Query: 345 SAGQYGTLITDIKVELDGKTG----DIIKKDAKQIPV-QSEAYTSGTTTVSLTDL--YQK 397 +AG ++TD+ + + IKK +PV A + T + ++ Y Sbjct: 44 AAGDGDLVVTDVV--MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY 101 Query: 398 FSKTPSIETILDKYRQAVTTISGRVVGTSTAVVSRTQVESGESP-LGDMIADAQQAAALQ 456 K + ++ +A+ R + G S + ++ + Sbjct: 102 LPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPL-VGRSAAMQEIYRVLARLMQTD 160 Query: 457 AS 458 + Sbjct: 161 LT 162
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 285 bits (730), Expect = 2e-99 Identities = 109/208 (52%), Positives = 144/208 (69%) Query: 1 MSIPKIASYSMPQAHEFTPNKTNWLLHTSRAVLLVHDMQQYFLDFYDLTQEPIPELIQNT 60 M+IP I Y MP A + NK +W+ +RAVLL+HDMQ YF+D + P+ EL N Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 KALIDAARQSNIPVVYTAQPGNQSPEYRQLLTDFWGPGLKDEPNITQIFPKISPQKNDTV 120 + L + Q IPVVYTAQPG+Q+P+ R LLTDFWGPGL P +I +++P+ +D V Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 121 LTKWRYSVFKFSPLEQLMRDSGRDQLIICGVYAHIGCLMSAAEAFMLNIQPFLCGDALAD 180 LTKWRYS FK + L ++MR GRDQLII G+YAHIGCL++A EAFM +I+ F GDA+AD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 181 FSREEHDMALKYASTRCAQVMTTQQVIQ 208 FS E+H MAL+YA+ RCA + T ++ Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLD 208
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 201 bits (512), Expect = 6e-67 Identities = 91/227 (40%), Positives = 127/227 (55%), Gaps = 1/227 (0%) Query: 4 VLTVKKNPEQWDISKTMTSDQSSQWQGISQDITHQQETQTLISELLEKYE-ITGLVNAAG 62 + V NPE+ + + ++ + D+ + + + + I LVN AG Sbjct: 35 IAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAG 94 Query: 63 VLIMRSMLEAKTEDWETLFAVNVMAPIAISQQVAKHFCAKRRGSIVTISSNSARMPRMQL 122 VL + E+WE F+VN S+ V+K+ +R GSIVT+ SN A +PR + Sbjct: 95 VLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSM 154 Query: 123 GMYATTKAALSHFCRNLALEIAPYQVRLNIVSPGSTLTQMQQQLWTDNAPPPAVIDGDLS 182 YA++KAA F + L LE+A Y +R NIVSPGST T MQ LW D VI G L Sbjct: 155 AAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLE 214 Query: 183 QYRTGIPLRKLAQPDDIANTVSFLLSDRAAQITMQEIVIDGGATLGV 229 ++TGIPL+KLA+P DIA+ V FL+S +A ITM + +DGGATLGV Sbjct: 215 TFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGATLGV 261
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 2e-09 Identities = 15/30 (50%), Positives = 22/30 (73%) Query: 35 TIVVTGAARGIGAAIAKQLLDQGYHVIGID 64 +VTGAA IG ++K+LL+ G+ V+GID Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGID 31
>PF04183#IucA / IucC family Length = 580 Score = 186 bits (473), Expect = 2e-53 Identities = 108/512 (21%), Positives = 192/512 (37%), Gaps = 37/512 (7%) Query: 130 STDKVQAFYEQLQKCL-KQYHLLQQHR-VNAHDLLNQSSAHRFRILEQYAGYRDRPYHPL 187 S V + L L LL+ R ++A DL+N ++ +L P Sbjct: 88 SDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINLNADRLQCLLS------GHPKFVF 141 Query: 188 AKLKEGLSQQEYMQYCPEFAQELSIHWVAVHKDKMMFGEGVENIFKQQPSEIFIPRAERY 247 K + G ++ +Y PE+A +HW+AV ++ M++ E Q + P+ E Sbjct: 142 NKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQ-EFA 200 Query: 248 QLKQEMFQRGLNETHIAMPIHPWQFEHLFPKFYADDIADGVCHPLNFISKGMYASASMRS 307 + Q + GL+ + +P+HPWQ++ + D A+G L A S+R+ Sbjct: 201 RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRT 260 Query: 308 LLSK-NVLEESLKLPIGIKALGSLRFLPIVKMINGEKNQKLLQQAKAKDAVLKLKLWLCE 366 L + +KLP+ I R +P + G + LQQ A DA L + Sbjct: 261 LTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVIL 320 Query: 367 ETQWWSYLPEKQNDRTADNEWLFVEKPTHLAAQRRHIPAELLQEPYQLIPMASLGHTI-T 425 Y+ + A + + E L R P L+ + MA+L Sbjct: 321 GEPAAGYVSHEGYAALARAPYRYQE---MLGVIWRENPCRWLKPDESPVLMATLMECDEN 377 Query: 426 GQPAIFDYILQLQHKEINSKQILIEFEKLCTCFFDVNLRLFSL-GLMGEIHGQNICLVLK 484 QP YI ++++ +L L G+ HGQNI L +K Sbjct: 378 NQPLAGAYI---DRSGLDAETW---LTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMK 431 Query: 485 NGEFDGLMFRD-HDSLRIYLPWVEQNGLKDPNYLSPHDFRNTLYHESVEALLFYIQTLGI 543 G ++ +D +R+ + + L P + R+ S + L+ +QT G Sbjct: 432 EGVPQRVLLKDFQGDMRLVKEE-----FPEMDSL-PQEVRDVTSRLSADYLIHDLQT-GH 484 Query: 544 QVNLGCIVDNLASHYQIEVKNLWSVLAHALQQVIQNLNFQ-PEILTQLQHLLFEVPEWPY 602 V + + L + + + +LA V+ + + P++ + P+ Sbjct: 485 FVTVLRFISPLMVRLGVPERRFYQLLA----AVLSDYMKKHPQMSERFALFSLFRPQIIR 540 Query: 603 KQLLRPLL---EQDTRIGSMPSGIGKTRNPLW 631 L L + D +P+ + +NPLW Sbjct: 541 VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLW 572
>PF04183#IucA / IucC family Length = 580 Score = 407 bits (1047), Expect = e-137 Identities = 150/585 (25%), Positives = 264/585 (45%), Gaps = 36/585 (6%) Query: 32 VEQRVIKQLLQALIFEDIIHSEYDGKN-FIIEVQNSQRQTIRYVAAGQRQYSYKLVHLAR 90 V +R++ ++L L +E + H+E G + + I + +Q + +R L Sbjct: 9 VNRRLVAKMLSELEYEQVFHAESQGDDRYCINLPGAQ-----WRFIAER---GIWGWLWI 60 Query: 91 NQDVFRQDENGHYQIATLNLVIDEILRSIT-DAAKVEDFIFELKRTFIHDLQSQAC-FDH 148 + R + ++ ++ + ++ A V + + +L T + DLQ Sbjct: 61 DAQTLRCADEP----VLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGL 116 Query: 149 YALPAIQYPYDILESYLMDGHPYHPCYKSRVGFSLQDNVRYGVEFAQPIALVWLAVHQDI 208 A I D L+ L+ GHP K R G+ + RY E+A L WLAV ++ Sbjct: 117 SASDLINLNADRLQC-LLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREH 175 Query: 209 VATKHSEDIEPDLFFKEQLNSQDQELFLQHLSDRDLKADEYIWIPVHPWQWENHLISIFA 268 + + +++ ++ Q+ F Q + L ++ +PVHPWQW+ + + F Sbjct: 176 MIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGL-DHNWLPLPVHPWQWQQKIATDFI 234 Query: 269 EEILNGKIVYLGQSQDRYLAQQSLRTMTNLQHPEKPYIKLSMSLTNTSSSRVLAKHTVMN 328 + G++V LG+ D++LAQQSLRT+TN IKL +++ NTS R + + Sbjct: 235 ADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAA 294 Query: 329 GPIITDWLQRLIKQSKTAQELDFAVLREVYGLSVD---FTKLPKSHAQQAYGTIGCLWRE 385 GP+ + WLQ++ T + +L E V + L ++ + +G +WRE Sbjct: 295 GPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQ-EMLGVIWRE 353 Query: 386 SVHQYLREGEDAIPLNGVSHIQKDGQALIGPWLQQYG--VESWTRQLLKVVITPLIHLLF 443 + ++L+ E + + + ++ Q L G ++ + G E+W QL +VV+ PL HLL Sbjct: 354 NPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLC 413 Query: 444 AEGIATESHGQNIILVHKQGWPTRVLLKDFHDGVRYSPAHLAHPELAPELDQLPPEHAKT 503 G+A +HGQNI L K+G P RVLLKDF +R PE+D LP E Sbjct: 414 RYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEF------PEMDSLPQEVRD- 466 Query: 504 NSMSFILTDDLNGIRDFSCACLFFVALTDIAIFVNQYFDLPEKNFWQWAAKVIQNYQQQH 563 + + FV + + +PE+ F+Q A V+ +Y ++H Sbjct: 467 -----VTSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKH 521 Query: 564 PEHASRYQLFDVFAEKLRIESLTKRRL-FGDRSIQIKFVDNPLAP 607 P+ + R+ LF +F ++ L +L + D + + N L Sbjct: 522 PQMSERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLED 566
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 131 bits (330), Expect = 1e-35 Identities = 90/430 (20%), Positives = 181/430 (42%), Gaps = 19/430 (4%) Query: 35 LNNSSFNPAIPHLMSYFQVGEVWASWVVVAFLLAMSISLPLAGFLSQRFGKRSIYLIALL 94 LN N ++P + + F +WV AF+L SI + G LS + G + + L ++ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 95 GFALASTAGGLFNQFESVLI-ARALQGFCSGLMIPLSLGLIFSVTPSEQRGSTTGLWGAM 153 S G + + F S+LI AR +QG + L + ++ P E RG GL G++ Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 154 IMLTLAVGPMLGALVLVWLNWKALFFINLPVACLALILGYVFLPKEQGDNKQEFDWAGFF 213 + + VGP +G ++ +++W + + +P+ + + + L K++ K FD G Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGII 205 Query: 214 FLGSSIVLLLGTLSQIHQIQDLFQPLYGAL-LVLSVLLFIRFIFLQKNKSMPLIEPALFA 272 + IV + LF Y L++SVL F+ F+ + + P ++P L Sbjct: 206 LMSVGIVFFM-----------LFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 273 TKGFRYSLVICVAQTVGLFIGMLLIPLWIQHLLKLSPLWTGFALMSSAVVTGICSQP-AG 331 F ++ + + ++P ++ + +LS G ++ ++ I G Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG 314 Query: 332 KYLDRYGAAKIMSLGLMITVASFLLLAWAPVQNVWFIVFCMILHGLGMGLSYMPSTTAGL 391 +DR G ++++G+ SFL ++ WF+ ++ G+ + +T Sbjct: 315 ILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVS 374 Query: 392 NSLRQQQQHLVTQAAALNNLFRRIFAAVAVVIAALYLQLRQQSLPLNTQAIFTSFHTMQE 451 +SL+QQ+ +L N + + I L + L + S + Sbjct: 375 SSLKQQE---AGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSN 431 Query: 452 IFVCCAILIL 461 + + + +I+ Sbjct: 432 LLLLFSGIIV 441
>PF04183#IucA / IucC family Length = 580 Score = 215 bits (550), Expect = 1e-64 Identities = 91/479 (18%), Positives = 184/479 (38%), Gaps = 35/479 (7%) Query: 80 IDGQWQKISAGTIVSLLLEELVIESQFKLDA--ASLLEKWIQSRDALLQFLKQRHN-DFD 136 ID Q + + +++ L + + DA A ++ + LQ LK R Sbjct: 60 IDAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSAS 119 Query: 137 DLVKAGQNFIESEQALILGHSMHPAPKSRNGFVHEDWLKFSPEHAGKTQLHYWLVHQNYI 196 DL+ + Q L+ GH K R G+ E +++PE+A +LH+ V + ++ Sbjct: 120 DLINL---NADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHM 176 Query: 197 AEGCATEQPISDQVKDAI---RWYLSESDLNLLKTHVEFKLLPLHPWQARYLQGKPWFEQ 253 C E I + A+ + + LP+HPWQ + + Sbjct: 177 IWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIAD 236 Query: 254 LKQTGQLIDIGLRGWQFSPTTSIRTLASFNAPW--MVKTSLSVMITNSIRVNLAKECHRG 311 + G+++ +G G Q+ S+RTL + + +K L++ T+ R + G Sbjct: 237 FAE-GRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAG 295 Query: 312 EISYRLWHSDLGKKILKQFPTLKAVNDPAWIALQIDGEIINETICIFRDQPFAVQQQVTC 371 ++ R + +PA + +G P+ Q+ + Sbjct: 296 PLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA------ALARAPYRYQEMLGV 349 Query: 372 I---ASLCQDHPNKELNRFNALFDQIAQKNQQT-------NFKEIALDWFDHFLKISLAP 421 I P++ L + +N Q A W ++ + P Sbjct: 350 IWRENPCRWLKPDESPVLMATLME--CDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVP 407 Query: 422 LMYVYHKYGMAFESHQQNVLLELEDGLPKNLWLRDNQG-FYYIEEFATEIVEALPDLLEK 480 L ++ +YG+A +H QN+ L +++G+P+ + L+D QG ++E E+ ++LP + Sbjct: 408 LYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEM-DSLPQEVRD 466 Query: 481 AHAVGPKDF-VDERFSYYFFGNTLFGLINAIGATGYISEDELLIHLQQNLLQLLEQYPD 538 + D+ + + + +F T+ I+ + + E L L ++++P Sbjct: 467 VTSRLSADYLIHDLQTGHFV--TVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQ 523
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 2e-11 Identities = 18/86 (20%), Positives = 38/86 (44%) Query: 1 MKMDRQAQFRAREALIFQVAEQLLLENGEAGMTLDVLAAELDLAKGTLYKHFQSKDELYM 60 M + + + I VA +L + G + +L +A + +G +Y HF+ K +L+ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 LLIIRNERMLLEMVQDTEKAFPEHLA 86 + +E + E+ + + FP Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPL 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.013 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 20 LLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICCAEGVDVVLTSADHPSGTDRL 79 +L+ D I V++QA G+D + I A D+V+T P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-AAGDGDLVVTDVVMP-DENAF 63 Query: 80 SEVARIKGWDAD 91 + RIK D Sbjct: 64 DLLPRIKKARPD 75
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 79.3 bits (195), Expect = 8e-21 Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 9/190 (4%) Query: 1 MSKKEDIINTALELFNQIGYNATGVDKIIAESNVAKMTFYKYFPSKESLIMECLHHRNIN 60 ++ I++ AL LF+Q G ++T + +I + V + Y +F K L E N Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 IQNSIYEKLSLHPDVS---PIEKIHLIFNWYIDWINSKNFNGCLFKKAFI--EVSKQYTS 115 I E + P E + + + + +F K E++ + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 116 IREPFQEYTNWLINLLNSLLVELDIK---DPTPLTHIIISIIDGIIIDGTIDKDLID-PS 171 R E + + L + + I+ I G++ + D Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189 Query: 172 KKWQYIEYLI 181 + Y+ L+ Sbjct: 190 EARDYVAILL 199
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 30.5 bits (68), Expect = 0.002 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 13/114 (11%) Query: 32 INLSVSSVHRRIKHLIE---ANIMGQLKREINFSKLGFTLHILLQVSLSKHDSETFDKFL 88 +NLS+S +HR++ L++ + G+L+ + +K T L S ++ + F + Sbjct: 1 MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANK-ETTFQGLTIASGARESEKVFAQ-- 57 Query: 89 SEIEAIPEVTNAFLVTGQSADFILELVARNMDDYSEILLRRIGKIDNV-VALHS 141 + V N L +A + V N+++Y LR +G ++V V+L S Sbjct: 58 ---TVLSHVANVVLTQEDTAKLLQSTVKHNLNNYD---LRSVGNGNSVLVSLRS 105
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 27.9 bits (62), Expect = 0.036 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 82 FEFQSDTYWGPLFSSVVTFAIFEAAFFSEIVRSGIQSISKGQVNAGYALGFTYGQSMRYV 141 +++S G L S F+ A E +R G + G + F YG V Sbjct: 458 MQYESSVSLGYLNQS------FQNAVM-EGIRYGCEQGLYGWNVTDCKICFKYGLYYSPV 510 Query: 142 VLPQAFRNMLPVLLTQTI-----ILFQDVSLVYVISAPDFLGRADTLANTYG 188 P FR + P++L Q + L + + + ++L RA T A Y Sbjct: 511 STPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYC 562
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.8 bits (62), Expect = 0.044 Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 63 IVAFLIAFLLGSLLGVIRTLPNKPLAFIGNCYVEIFRNIPLIVQLFFWAFVFPEFL 118 +++ LI ++ L + LP + I +I R + +I + F ++ Sbjct: 149 LLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISIADYA 204
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 29.0 bits (65), Expect = 0.017 Identities = 9/52 (17%), Positives = 15/52 (28%) Query: 253 AGSWGKQGGGSYGFENGHMLLWTQWANPEDRPNFPKADEYTEKYGEAMSKWM 304 A + G G + L + P ++ + P E M W Sbjct: 72 ALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWR 123
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.028 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 247 VTNDFDLVALE-KLNELQAKFPWFEYRTVVASPESNHERKG 286 +T D+DL AL L E++ + P E+ VV +P S ++KG Sbjct: 488 LTADYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKG 528
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.5 bits (237), Expect = 1e-25 Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 7/259 (2%) Query: 3 NRQRFTDKVVIITGSAQGIGRGVAMQVAAEGGQVVMAD-RSEYVEEVLTEIQRAGGEAVT 61 N + K+ ITG+AQGIG VA +A++G + D E +E+V++ ++ A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 62 INADLETYAGAQAVVAKAIEHYGRVDVLINNVGGAIWMKPFEEFSEEEIIKEVNRSLFPT 121 AD+ A + A+ G +D+L+ NV G + S+EE + + Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 122 LWCCRAVLPAMIKQQAGVIVNVSSIA--TRGINRIPYSASKGGVNALTASLAFEHAKDGI 179 R+V M+ +++G IV V S + Y++SK T L E A+ I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 180 RVNAVATGGTEAPPRKVPRNANPLSQNEKDWMQQVVDQTKDRTFMGRYGTIQEQVNAILF 239 R N V+ G TE + + + ++ ++ K + + + +A+LF Sbjct: 181 RCNIVSPGSTET---DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 240 LASDEASYITGSVIPVGGG 258 L S +A +IT + V GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 74.9 bits (184), Expect = 1e-16 Identities = 73/405 (18%), Positives = 147/405 (36%), Gaps = 17/405 (4%) Query: 30 HWKVLIWCLLIIIFDGYDLVIYGVALPLLMQQWSLTAVEAGLLASAALFGMMFGAMIFGT 89 H ++LIW ++ F + ++ V+LP + ++ + +A + G ++G Sbjct: 12 HNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71 Query: 90 LSDKLGRKKTILICVTLFSGFTFIGAFAKGPTEFAIL-RFIAGLGIGGVMPNVVALMTEY 148 LSD+LG K+ +L + + + IG I+ RFI G G V+ ++ Y Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 149 APKKIRSTLVAIMFSGYAIGGMTSALLGAWLVKDMGWQIMFLIAGIPLLLLPLIWKFLPE 208 PK+ R ++ S A+G +G + + W + LI I ++ +P + K L + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 209 SLAFLVKSNHSKQAKSIVSKIAPQTQVNANTQLVLNEST-------TTDAPVRALFQQGR 261 + + V + + + L S V F Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 262 TFSTFMFWIAFFMCLLMVYALGSW--LPKLMLQAGYSLG---ASMLFLFALNIGGMVGAI 316 F I ++ + + + M++ + L + +F + ++ Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 317 GGGALADRFHLKPVITIMFIVGSAALILLGI---NSPQFILYSLIAIAGAATIGSQILLY 373 GG L DR V+ I S + + + F+ ++ + G + ++ ++ Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF-TKTVIS 370 Query: 374 TFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALLSFELPHQ 418 T V+ GM + + G + G LLS L Q Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415 Score = 31.8 bits (72), Expect = 0.005 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 313 VGAIGGGALADRFHLKPVITIMFIVGSAALILLGINSPQF---ILYSLIAIAGAATIGSQ 369 +G G L+D+ +K ++ I+ ++ + F I+ I AGAA + Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA- 122 Query: 370 ILLYTFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALLS-FELPHQMNFLAIAIPG 428 L+ VA++ P R G I +G +GP + G + + + I I Sbjct: 123 -LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181 Query: 429 V 429 V Sbjct: 182 V 182
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 29.5 bits (66), Expect = 0.005 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 1 MKKSLLAIALMSTLLVACNKHENKTETTSD 30 MK L A+AL +TLLV C + SD Sbjct: 1 MKLRLSALALGTTLLVGCASSGTDQQGRSD 30
>PF05043#Transcriptional activator Length = 493 Score = 29.9 bits (67), Expect = 0.016 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 3 LERVDLNLLIYLDVLLREK---NVTRAAEQLGVTQPAMSNILRRLRNLFNDPLLIRSSEG 59 L + L L++L K + + AE L T+ A+ + L +++ F D + S+ G Sbjct: 5 LSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNG 64 Query: 60 M 60 + Sbjct: 65 I 65
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 27.5 bits (61), Expect = 0.029 Identities = 18/83 (21%), Positives = 31/83 (37%) Query: 51 LDLSGSEQELQQRYAEPEEIKKVGRPKLGVISREITLQKKHWDWLDQQSASASAVIRKLI 110 L LS E+EL R ++IKK I +E QK + Q A ++++ + Sbjct: 31 LKLSKKEKELIWRNTVKKDIKKSICFFNDEIIQEPMRQKYIFICWLQGIEKAPYIVQQCV 90 Query: 111 DKELNNPNSEGNIMLAKQAIDRF 133 N I++ + Sbjct: 91 ASVKKNSGDFKVIIIDGNNYKEW 113
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 67.6 bits (165), Expect = 5e-14 Identities = 56/181 (30%), Positives = 77/181 (42%), Gaps = 26/181 (14%) Query: 33 VDDGKSTLIGRLLYDSKLIYEDQLQAVTRDSKKVGTTGDAPDLALLVDGLQAEREQGITI 92 VD GK+TL LLY+S I +L +V + GTT D ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAI--TELGSVDK-----GTT--------RTDNTLLERQRGITI 56 Query: 93 DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAIILIDARYGVQTQTRRHTFIA 152 F E K I DTPGH + + S D AI+LI A+ GVQ QTR Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 153 SLLGIKNIVVAINKMDLVEYSSERFNEIQVEYDAFVSQLGDRRPANILFVPISALNGDNV 212 +GI I INK+D + ++ + ++ A I+ L + Sbjct: 117 RKMGIPTIFF-INKID----------QNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMC 165 Query: 213 V 213 V Sbjct: 166 V 166
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 101 bits (253), Expect = 7e-28 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 12/259 (4%) Query: 5 VEGKVAVVTGGSSGIGLAAVEILVAEGAKVAW--CGRDEERLNASKHYILEKFPHANIFT 62 +EGK+A +TG + GIG A L ++GA +A ++ S + A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 KACNVLKKEEVQQFAKEVKLNLGNVDMLINNAGQGRVSNFENTQDEDWMKEIELKYFSVL 122 + E + +E+ G +D+L+N AG R + DE+W + V Sbjct: 66 VRDSAAIDEITARIEREM----GPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 123 HPVRAFLDDLKQSANASITNVNSLLALQPEPHMIATSSARAALLNLTHSLAHEFTQYGVR 182 + R+ + + SI V S A P M A +S++AA + T L E +Y +R Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 183 VNSILLGMVESA-QWKRRYETRSDLNLSWEEWTGNIAKNR-GIPMQRLGRPEEPARALVF 240 N + G E+ QW +D N + + G++ + GIP+++L +P + A A++F Sbjct: 182 CNIVSPGSTETDMQW----SLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 241 LASPLASYTTGSAIDVSGG 259 L S A + T + V GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 1e-07 Identities = 74/363 (20%), Positives = 131/363 (36%), Gaps = 26/363 (7%) Query: 52 AKLGWLMTSFLLAYGFSSVFLSFLGDIFNPKKMLFWSVTSWGLLMLCMGFTTSYSGMLIL 111 A G L+ + L + L L D F + +L S+ + M + I Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 112 RVLLGLAEGPLFALAYTIVKQTYTDRQQARASTMFLLGTPIGA-FLGFPITAAVLAHHDW 170 R++ G+ I T RA + G + P+ ++ Sbjct: 103 RIVAGITGATGAVAGAYIADIT---DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP 159 Query: 171 HTTFFVMAALTLIAILSIVFGLRNLQL--KKTVELEGESKRTNFKGHIANTKVLVSNSAF 228 H FF AAL + L+ F L ++ + E + +F+ T V + F Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVF 219 Query: 229 WLVCLFNIALMTYLWGLNS-----WVPSYLMQDKGFNLKEFGVYSSFPFIAMLIGEVVGA 283 +++ L LW + W + G +L FG+ S AM+ G Sbjct: 220 FIMQLVGQVPAA-LWVIFGEDRFHWDAT----TIGISLAAFGILHSL-AQAMITG----- 268 Query: 284 FLSDKLGRRAIQVFSGLLLAGIFMYVMVIMTEPLLIIAAMSLSAMAWGFGVAAVFALLAR 343 ++ +LG R + G++ G ++ T + M L A + G G+ A+ A+L+R Sbjct: 269 PVAARLGERRA-LMLGMIADGTGYILLAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSR 326 Query: 344 VTTSNVGATAGGIFNGLGNFASAIAPVLIGYIVMQTHSFNLGITFLAAVAVIGSLFLVPL 403 G L + S + P+L I + + G ++A A+ L +P Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALY--LLCLPA 384 Query: 404 LKR 406 L+R Sbjct: 385 LRR 387
>PF06704#DspF/AvrF protein Length = 129 Score = 27.9 bits (62), Expect = 0.031 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 185 PEVSAFLKNMHEAQGTKIHLDSKSLHLVEAPDQKVEVVNHPQHSQLFDCVV 235 + S +K++ GT + + L ++ D + V+ P HS + V+ Sbjct: 6 TDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHS---EMVI 53
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 109 bits (274), Expect = 6e-31 Identities = 60/258 (23%), Positives = 123/258 (47%), Gaps = 13/258 (5%) Query: 15 NVALLQGKKVLVTGAARGLGRDFAQAIAEAGAEVVMADILSDLVQQEAQALQQQGLKVHA 74 N ++GK +TGAA+G+G A+ +A GA + D + +++ +L+ + A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 75 VTVDLANADSIENAVAKSMEVLQGLDGLVNCAALATNVGGKNMMNYDPGLWDRVMNINVK 134 D+ ++ +I+ A+ + +D LVN A + G + ++ + W+ ++N Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEE--WEATFSVNST 118 Query: 135 GTWLITKACIPHLKQSAAGKIINVASDTALWGAPNLMAYVASKGAIVAMTRSMARELGQF 194 G + +++ ++ +G I+ V S+ A ++ AY +SK A V T+ + EL ++ Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 195 NICVNTLSPGL--TLVEATEYVPQERHDLYVNGRAIQ--------RQQLPQDLNGTALYL 244 NI N +SPG T ++ + + + + + G + P D+ L+L Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 245 LSDLSSFVTGQNIPVNGG 262 +S + +T N+ V+GG Sbjct: 239 VSGQAGHITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.043 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%) Query: 362 RDGMNLVAKEYIAAQDPENPGVLILSKYAGAAEQMTQAL-------IVDPLDRAAMMDSL 414 + +L+ + I P+ P VL++S +A + P D ++ + Sbjct: 60 ENAFDLLPR--IKKARPDLP-VLVMSAQ-NTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 415 KTALEMSKAERINR 428 AL K Sbjct: 116 GRALAEPKRRPSKL 129
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 2e-06 Identities = 60/352 (17%), Positives = 118/352 (33%), Gaps = 20/352 (5%) Query: 70 ANFGLLLLCMGIGSMIAMPATGALVKRWGCRPLIAVATILLMVLLPSLTIWHSLVSMAVA 129 A++G+LL + P GAL R+G RP++ V+ V + L + + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 130 LFIFGTAAGSLGVAINLQAVVVEKHSLRALMSSFHGMCSLGGLIGAMLVTALLAIGLSPL 189 + G + VA A + + RA F C G++ ++ L+ G SP Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDE-RARHFGFMSACFGFGMVAGPVLGGLMG-GFSPH 160 Query: 190 MSTLSVVMVLLVVSFVAIPSALTTFEQDEQGAAEITDAPKKSSRPNGTILLIGMMCFIAF 249 + + + + + + + P S R + ++ + + F Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 250 L----SEGAAMDWGGIYLTSKYQLNPAFAGLAYTFFAL--SMTSGRFAGHILLKQWGEKT 303 + + A W I+ ++ + G++ F + S+ G + + GE+ Sbjct: 221 IMQLVGQVPAALW-VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG-PVAARLGERR 278 Query: 304 IVTYSAIVAALAMVTIVMAPVWQVVVLGYALLGLG--CSNIVPVMFSRVGRQNDMPKAAA 361 + I + + A + LL G + M SR + + Sbjct: 279 ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQG 338 Query: 362 LSLVSTIAYTGSLSGPALIGLI-----GQWTSLTTVLSGVAVLLTMIAILNR 408 + + S+ GP L I W + G A+ L + L R Sbjct: 339 SL--AALTSLTSIVGPLLFTAIYAASITTWNGWAWIA-GAALYLLCLPALRR 387
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 36.0 bits (83), Expect = 2e-05 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%) Query: 46 HEMQEE-----ASHADAIIRRVLFLGAKPNMHREDINVGTDV---------VSCLKADLA 91 HE EE A D I R+L +G +P ++ + ++A + Sbjct: 47 HEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVN 106 Query: 92 LEYHVREKLATGIKLCEEKGDYISRDMLRQQLSDTEE 128 + + I L EE D + D+ + + E+ Sbjct: 107 DYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK 143
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 2e-04 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 13/167 (7%) Query: 46 QPVIPRHVRDQLEQPEVTVASAAVAARVEPTLSEPAQSEEKGTKELEQASQAQTVQTQVP 105 P + V + EQ E A A +PT++ +E ++ A Q P Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVN----IKEPQSQTNTTADTEQ------P 1171 Query: 106 VEKTPVEVEEVKAEENTVSPTVSENSSVELVDTVSAEPEVVSSSEPKVAEGQPKTEPELS 165 ++T VE+ E TV+ S + E + +P V S S K ++ + Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 166 LNPNIETAEIAEFEGESNILDVHLHEQQRFDDESALAMAEQIIALNV 212 N T + + + D A A Q +ALNV Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA---QFVALNV 1275 Score = 33.5 bits (76), Expect = 0.002 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 15/130 (11%) Query: 54 RDQLEQPEVTVASAAVAARVEPTLSEPAQSEEKGTKELEQASQAQTVQTQVPVEKTPVEV 113 R L PEV + V T + E+ ++ P TP E Sbjct: 977 RYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 114 EEVKAEE-NTVSPTVSENSSVELVDTVSAEPEVVSSSEPKVAEGQPKTEPELSLNPNIET 172 E AE S TV +N ++E + E + ++ N +T Sbjct: 1037 TETVAENSKQESKTVEKNEQ--------------DATETTAQNREVAKEAKSNVKANTQT 1082 Query: 173 AEIAEFEGES 182 E+A+ E+ Sbjct: 1083 NEVAQSGSET 1092 Score = 29.3 bits (65), Expect = 0.032 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 5/143 (3%) Query: 21 RMILKKPNHAEPSLDSDLHINPESNQPVIPRHVRDQLEQPEVTVASAAVAARVEPTLSEP 80 + P A PS ++ N + V + T A A+ + + Sbjct: 1022 EAPVPPPAPATPSETTETV---AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA 1078 Query: 81 AQSEEKGTKELEQASQAQTVQTQVPVEKTPVEVEEVKAEENTVSPTVSENSS--VELVDT 138 + + + + QT +T+ E +V+ E+ P V+ S E +T Sbjct: 1079 NTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138 Query: 139 VSAEPEVVSSSEPKVAEGQPKTE 161 V + E ++P V +P+++ Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQ 1161
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 61.2 bits (148), Expect = 1e-11 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 7/272 (2%) Query: 651 EQVLQKQQPELQALDQIIVQQKDELGQLQVDLQQKQQVIKQKQKDLQQLDVQIAKQQTAA 710 + +AL + +EL + L++ + + +K +Q+L+ + A + A Sbjct: 70 KLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKAL 129 Query: 711 QAFLLQKQQLKDQLAQLDTQLEEDAMQKDDLEIDLHALAMKLETILPDYKTLQFQVEELT 770 + + ++ L+ + A +K DLE L KTL+ + L Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 189 Query: 771 EQLEEQQQVLQQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQITAQMEQAKKFVD 830 + E ++ L+ LE + + L ++ + +E A F Sbjct: 190 ARQAELEKALEGAMNFSTADSAKIKT-------LEAEKAALAARKADLEKALEGAMNFST 242 Query: 831 PIQLELPNLESEFQQQFAQTEKLQKTWNEWQIELNSVQEKQQTLTDQRHQYQQQDEKLRE 890 ++ LE+E A+ +L+K + K +TL ++ + + L Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 891 QLEAKRLAWQAAKSDREHYQEQLKELNAELQT 922 Q + Q+ + D + +E K+L AE Q Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQK 334 Score = 56.2 bits (135), Expect = 5e-10 Identities = 55/344 (15%), Positives = 126/344 (36%), Gaps = 5/344 (1%) Query: 155 AKPEEMRIFIEEAAGVSRYQARRRETLQHLEHTEQNLSRLEDIALELKSQLKTLKRQSEA 214 ++ + + E A + L + L D E S K R+++ Sbjct: 47 SQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDK 106 Query: 215 AVQYKTLESQIRTLKIEILSFQAEKSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLES 274 ++ K + Q + L E ++ + ++ L + + + +E LE Sbjct: 107 SLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEG 166 Query: 275 TSALFQRLIQQSSPLQQEWQQAEKKLSELKMTLEQKQSLFQQNSTTLVQLEQQKAQTKER 334 + L+ E E + +EL+ LE + +S + LE +KA R Sbjct: 167 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAAR 226 Query: 335 LQLSELQLETLNSQLEEQTEALTAIEHTAAEAEQSFAGLQSQQRQAQQQFEQVKAQVEKQ 394 E LE + + + +E A E A L+ A A+++ Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 395 QQQKMQMSAQIEQLGKNVQRIEQQKETLQHQANQIQSQVHEDEQGELEQLQQQLCREIST 454 + +K + A+ L Q + +++L+ + + +LE Q+L + Sbjct: 287 EAEKAALEAEKADLEHQSQVLNANRQSLRRDL-----DASREAKKQLEAEHQKLEEQNKI 341 Query: 455 LEAEIEQYVQRIEQAQQAHQVNKNQQQTLKTEIQVLLSEQKNLS 498 EA + + ++ +++A + + + Q L+ + ++ + +++L Sbjct: 342 SEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385 Score = 46.2 bits (109), Expect = 7e-07 Identities = 35/255 (13%), Positives = 86/255 (33%), Gaps = 6/255 (2%) Query: 742 EIDLHALAMKLETILPDYKTLQFQVEELTEQLEEQQQVLQQQQQEREILRRNSTQTTQQI 801 L + + + + TL+ + +L+ + + + +E + + + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 802 ELLEKDISFLQSQYQQITAQMEQAKKFVDPIQLELPNLESEFQQQFAQTEKLQKTWNEWQ 861 I L+++ + +E A F ++ LE+E A+ L+K Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 862 IELNSVQEKQQTLTDQRHQYQQQDEKLREQLEAKRLAWQAAKSDREHYQEQLKELNAELQ 921 + K +TL ++ + + +L + LE A + + + + L A Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 922 ------TGLKIDLTEHQQKLEKVQKQFEKIGAVNLAASQEFEEVSQRFDELSHQIQDLEN 975 G T K++ ++ + + A + E S +I+ LE Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 288 Query: 976 TVTQLKDAMKSIDQE 990 L+ ++ + Sbjct: 289 EKAALEAEKADLEHQ 303 Score = 41.6 bits (97), Expect = 2e-05 Identities = 48/312 (15%), Positives = 119/312 (38%), Gaps = 11/312 (3%) Query: 644 RIRLDEIEQVLQKQQPELQALDQIIVQQKDELGQLQVDLQQKQQVIKQKQKDLQQLDVQI 703 ++ + E AL+ + + L IK + + L + Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Query: 704 AKQQTAAQAFLLQKQQLKDQLAQLDTQLEEDAMQKDDLEIDLHALAMKLETILPDYKTLQ 763 A + A + + ++ L+ + ++ +LE L Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF-------STADS 280 Query: 764 FQVEELTEQLEEQQQVLQQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQITAQME 823 +++ L + + + + ++L N + ++ + L++++Q++ Q + Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 824 QAKKFVDPIQLELPNLESEFQQQFAQTEKLQKTWNEWQIELNSVQEKQQTLTDQRHQYQQ 883 ++ ++ +L +Q A+ +KL++ + +I S Q ++ L R ++ Sbjct: 341 ISEASRQSLRRDLDASREAKKQLEAEHQKLEE---QNKISEASRQSLRRDLDASREA-KK 396 Query: 884 QDEKLREQLEAKRLAWQAAKSDREHYQEQLKELNAELQTGLKIDLTEHQQKLEKVQKQFE 943 Q EK E+ +K A + + E ++ ++ AELQ L+ + ++KL K ++ Sbjct: 397 QVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELA 456 Query: 944 KIGAVNLAASQE 955 K+ A + SQ Sbjct: 457 KLRAGKASDSQT 468 Score = 30.4 bits (68), Expect = 0.047 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 6/163 (3%) Query: 838 NLESEFQQQFAQTEKLQKTWNEWQIELNSVQEKQQTLT---DQRHQYQQQDEKLREQLEA 894 L E + K K+ +E ++ ++ ++ L + + D + LEA Sbjct: 89 ELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEA 148 Query: 895 KRLAWQAAKSDREHYQEQLKELNAELQTGLKIDLTEHQQKLEKVQ---KQFEKIGAVNLA 951 ++ A A K+D E E + +K E + K E + A Sbjct: 149 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA 208 Query: 952 ASQEFEEVSQRFDELSHQIQDLENTVTQLKDAMKSIDQETRKL 994 S + + + L+ + DLE + + + + + L Sbjct: 209 DSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251
>PF03309#Bvg accessory factor Length = 271 Score = 96.4 bits (240), Expect = 4e-26 Identities = 43/263 (16%), Positives = 97/263 (36%), Gaps = 34/263 (12%) Query: 4 LWLDIGNTRLKYWI----TENQQIIEH--AAELHLQSPADLLLGLIQHFKHQG--LHRIG 55 L +D+ NT + ++ ++++ + +L L + L Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAERLTGAS 62 Query: 56 ISSVLDTENNQRIQQILKWLEI-PVVFAKVHAEYAGLQCGYEVPSQLGIDRWLQ-VLAVA 113 S + + ++ + ++ P V + G+ + P ++G DR + + A Sbjct: 63 GLSTVPSVLHEVRVMLEQYWPNVPHVLIEPGVR-TGIPLLVDNPKEVGADRIVNCLAAYH 121 Query: 114 EEKENYCIIGCGTALTID-LTKGKQHLGGYILPNLYLQRDALIQNTK-----GIKIPDSA 167 + ++ G+++ +D ++ + LGG I P + + DA + + P S Sbjct: 122 KYGTAAIVVDFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRPRSV 181 Query: 168 FDNLNPGNNTVDAVHHGILLGLISTIESIMQQS----------PKKLLLTGGDAPLFAKF 217 G NTV+ + G + G ++ ++ + ++ TG APL Sbjct: 182 I-----GKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPD 236 Query: 218 LQKYQPTVETDLLLKGLQQYIAH 240 L + + L L GL + + Sbjct: 237 L-RTVEHYDRHLTLDGL-RLVFE 257
>cloacin#Cloacin signature. Length = 551 Score = 27.0 bits (59), Expect = 0.045 Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 9/153 (5%) Query: 10 NKLDELKANAADAKVQGEKALDDLKENVKEKQTAGKEAIADKVDELKTKAADAKVQGEKA 69 N+ +E A + + + + + K + +AIA+ + A D G + Sbjct: 331 NQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEI-KQFNRFAHDPMAGGHRM 389 Query: 70 LEDLKENVKEKQA------AAKEAVEDKASDLKGKLDDAQHSLQDKFDHLRTEAAHKLDD 123 + + Q AA +A + SD L A S + K D R A + L+D Sbjct: 390 WQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKR-SAENNLND 448 Query: 124 AKAKAAE-LKEEAATKFDELKTQATAKFDELKK 155 K K + K+ KT+ +LK Sbjct: 449 EKNKPRKGFKDYGHDYHPAPKTENIKGLGDLKP 481
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.8 bits (103), Expect = 8e-08 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 16/165 (9%) Query: 1 MSKRQKIAAHNRDELLNAAEECFRIHGI-NVPLQVVIDHAGVGRATFYRNFCDRKALISA 59 K ++ A R +L+ A F G+ + L + AGV R Y +F D+ L S Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 60 LLERAITQLEQKAAHFQQFEDG----LFRLIEGHIAQLPKLAILQDFWRVIDRQDPIMLK 115 + E + + + + +Q G + R I H+ + + I + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 116 -----------IYERRNNALKPLIENAIEQKLCRADLTADDYAMF 149 + + ++ +++ IE K+ ADL A+ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAII 166
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.7 bits (90), Expect = 5e-05 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 9/160 (5%) Query: 41 FIGLFVAISASLSNGFITANLPLIQGEYGLTPSEAAWLPAAYVMANVSSNLILFKARQQY 100 + F ++ + N +LP I ++ P+ W+ A+++ + K Q Sbjct: 21 ILSFFSVLNEMVLN----VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 101 GLRVFSEIGLVIFIAVLVLHIFVHTY-EMALFARVVAGLAGA--PLSSLGMYYTMQAFKK 157 G++ G++I V+ H++ + + AR + G A P + + + Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 158 ADMAKGIYIAFGFQQLGVPLAWIISPFLVSTDSWSVLYTF 197 A G+ + +G + I + WS L Sbjct: 137 RGKAFGLIGSIV--AMGEGVGPAIGGMIAHYIHWSYLLLI 174
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 126 bits (319), Expect = 1e-34 Identities = 72/415 (17%), Positives = 147/415 (35%), Gaps = 87/415 (20%) Query: 36 PTKRSTLLWMLGVLIIGILVILWAWRIGPFATSVQQTDNSYVKGKTTILSSQINGYVKDV 95 P R L ++ ++ + + +G G++ + N VK++ Sbjct: 52 PVSRRPRLVAYFIMGFLVIAFILSV-LGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 96 LVKDFDHVKKGQVLMHIDATTYD------------------------------------- 118 +VK+ + V+KG VL+ + A + Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 119 -----------QKVAQAASGVEQAKNTLANQT----QSIAQKQADIVAAQAKVEQVRAQY 163 ++V + S +++ +T NQ ++ +K+A+ + A++ + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 164 ELSLAQLRRYQQLGNSGAASKS---EQDKAAADAENNLAALK----QAEANVLVAKEALK 216 + ++L + L + A +K EQ+ +A N L K Q E+ +L AKE + Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 217 TA----------QVAEAGLEAQVSSAKAQLDQAQTTKDYSVIVAPMDGQLGEVNPR-VGQ 265 ++ + + +L + + + SVI AP+ ++ ++ G Sbjct: 291 LVTQLFKNEILDKLRQT--TDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGG 348 Query: 266 YVAAGSQLLYLIPQQT--WVIANFKETQIANMRIGQKAWFTVDAM---KHKKFTGHVEQI 320 V L+ ++P+ V A + I + +GQ A V+A ++ G V+ I Sbjct: 349 VVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNI 408 Query: 321 SPAAGSEFSVLKPDNATGNFTKVVQRIAVRITIDPNQEGMEHLRPGMSVITSVDT 375 + A D G V+ I N+ L GM+V + T Sbjct: 409 NLDA-------IEDQRLGLVFNVIISIEENCLSTGNKN--IPLSSGMAVTAEIKT 454
>INTIMIN#Intimin signature. Length = 939 Score = 31.6 bits (71), Expect = 0.008 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%) Query: 353 VRYYDDQWSLNLGLGQR-FSPKWLGSVSVGWDSGAGDKVSTGGPTKGYYNLGVGAQY 408 RY D +++ NLG GQR F P+ + +V D + LG+G +Y Sbjct: 248 ARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDF---------SGDNTRLGIGGEY 295
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 5e-05 Identities = 66/356 (18%), Positives = 128/356 (35%), Gaps = 46/356 (12%) Query: 64 LMRPLGAIFLGAYVDKVGRRKGLIVTLSLMAIGTILITFVPGYETIGIIAPILVVIGRLL 123 LM+ A LGA D+ GRR L+V+L+ A+ ++ P ++ IGR++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 124 QGFSAGVESGGVSIYLAEIATDKNRGFITSWQSGSQQIAVVFAALLGYWLNTILTHAQVG 183 G + G Y+A+I R + S +V +LG + G Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM---------G 155 Query: 184 EWGWRIPFLI-----GCLIIPLIFLFRRTLEETEDFKAQKTHPSSKEIFSTLVSNWRIVL 238 + PF G + FL + + P +E + L S +R Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPES-------HKGERRPLRREALNPLAS-FRWAR 207 Query: 239 AGMMMSAMTTTTF-------YFITVYTTVYAKRTLEMSVTDSLLATVFVGLSNFFWLPMG 291 +++A+ F ++ R + T + F L + + Sbjct: 208 GMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMIT 267 Query: 292 GLLSDKIG-RRPVLVGITTLAIFTSYPVLSWLVSDISFSNLLITLAYFSFFFGMYNGTMV 350 G ++ ++G RR +++G+ +A T Y +L++ +++ LA + Sbjct: 268 GPVAARLGERRALMLGM--IADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLS 325 Query: 351 ATLAEVMPKRVRTVGFSLAFSLAAAIFGGMTPMACTFLVENTGNASTPAFWLMLAA 406 + E +++ G A + +I G P+ T + + W+ AA Sbjct: 326 RQVDEERQGQLQ--GSLAALTSLTSIVG---PLLFTAIYAASITTWNGWAWIAGAA 376
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.012 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 305 DRGFIFLLLIVSASGLVLMAFRNTPYMALLLIFHLATVMTFFITMP 350 +R + L +I +G +L+AF +MA ++ LA + I MP Sbjct: 276 ERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA---SGGIGMP 318
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.022 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 293 RNELIPLLSEHFLQKSAKE 311 R E IP L HF+Q++ KE Sbjct: 313 RAEDIPDLVRHFVQQAEKE 331
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 52.5 bits (126), Expect = 1e-09 Identities = 63/395 (15%), Positives = 124/395 (31%), Gaps = 29/395 (7%) Query: 34 ALLFAYFAMVVDGIDIMLLSYSLTSLKAEFGLSTFQAGALGSA----SLAGMGIGGILGG 89 L+ + +D + I L+ L L + S G +L +LG Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 90 WACDKFGRVRTIANSVTFFSVATCLLGFTQSFEQFMALRFIGALGIGALYMACNTLMAEY 149 + D+FGR + S+ +V ++ R + + GA +A+ Sbjct: 66 LS-DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADI 123 Query: 150 VPTTYRTTVLGTLQTGQTVGYIAATLLAGAIIPDHGWRVLFFLTVVPAFVNIFLQRFVPE 209 R G + G +A +L G + F + + +PE Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 210 PKSWQLTKIESLQGNRQPKERVVAEKPKSSSIYKQIFNNFKHRKMFLLWMTTAFFLQ-FG 268 +G R+P R A P +S + + + M F +Q G Sbjct: 184 SH----------KGERRP-LRREALNPLASFRWARGM------TVVAALMAVFFIMQLVG 226 Query: 269 YYGINNWMPSYLETEVHMNFKNLT-SYMVGSYTAMILGKILAGYLADKFNRRAVFVFGTI 327 W+ + E H + + S + ++ G +A + R + G I Sbjct: 227 QVPAALWV-IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMI 285 Query: 328 ASAVFLPIIIFFNTPDNILYLLITFGFLYGIPYGVNATYMAESFSTDVRGTAIGGAYNIG 387 A ++ F +++ GI ++ + +G G + Sbjct: 286 ADGTGYILLAFATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAALT 344 Query: 388 RVGAAIAPATIGFL--ASGGTFTMAFIVMGAAYFV 420 + + + P + AS T+ + GAA ++ Sbjct: 345 SLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYL 379
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 212 bits (540), Expect = 3e-63 Identities = 110/459 (23%), Positives = 203/459 (44%), Gaps = 48/459 (10%) Query: 18 RTFAIISHPDAGKTTMTEKLLLWGKAIQVAGMVKSRKSDRAATSDWMEMEKERGISITTS 77 +++H DAGKTT+TE LL AI G V +D +E++RGI+I T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG----TTRTDNTLLERQRGITIQTG 59 Query: 78 VMQFPYKGHTINLLDTPGHEDFSEDTYRTLTAVDSALMVIDGAKGVEERTIKLMEVCRMR 137 + F ++ +N++DTPGH DF + YR+L+ +D A+++I GV+ +T L R Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 138 DTPIISFVNKMDREIREPLELLDEIENVLNIRCVPITWPLGMGRDFAGVYNILEDKLYVY 197 P I F+NK+D+ + + +I+ L+ V K+ +Y Sbjct: 120 GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------KVELY 161 Query: 198 KAGFGSTITDIEVRDGY--NHADIREKVGELAWASFEESLELVQMANEPLDRELFLQGKQ 255 + T+ E D + D+ EK +SLE +++ E + F Sbjct: 162 PNMCVTNFTESEQWDTVIEGNDDLLEKYMS------GKSLEALELEQE--ESIRFHNCSL 213 Query: 256 TPVLFGTALGNFGVDHVLDAFMNWAPEPKAHPTQERVVEAKEEGFSGFVFKIQANMDPKH 315 PV G+A N G+D++++ N + G VFKI+ K Sbjct: 214 FPVYHGSAKNNIGIDNLIEVITNKFYSS---------THRGQSELCGKVFKIE--YSEK- 261 Query: 316 RDRIAFMRICSGKYEKGLKMNHVRIGKEVRISDALTFLAGEREHLEEAWPGDIIGLHNHG 375 R R+A++R+ SG + K ++I++ T + GE +++A+ G+I+ L N Sbjct: 262 RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEF 320 Query: 376 TIQIGDTFTSGENLHFTGIPHFAPEMFR-RVRLKDPLKSKQLQKGLKELSEEGAT-QVFM 433 +++ + L + + V P + + L L E+S+ + ++ Sbjct: 321 -LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYV 379 Query: 434 PQISNDLIVGAVGVLQFDVVAYRLKEEYKVDCVYEPVSV 472 ++++I+ +G +Q +V L+E+Y V+ + +V Sbjct: 380 DSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTV 418
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 2e-16 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 18/176 (10%) Query: 1 MTGQPMSKRETIITTAMTLFNQKSYTSIGVDKIIAESKVAKMTFYKYFSSKEVLIEECLR 60 + R+ I+ A+ LF+Q+ +S + +I + V + Y +F K L E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 R---RILEVQTSLLDKVNSADNPLNKLKSIFNWYIDWINTED----FSGCLFKKATIEVL 113 I E++ K +PL+ L+ I ++ TE+ +F K E + Sbjct: 65 LSESNIGELELEYQAKF--PGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC--EFV 120 Query: 114 QLYPSIKKQVNKYREWIYSLVLSIFLE-------LEIEDPKVLSSLFLNIIDGLII 162 +++ Y + + + + I GL+ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 8e-11 Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 12 SVLHKSRYLFNKHGFHNVGVDRIVREAEVTKASFYNYFHSKERLIEMCLNFQKDVLKEQV 71 +L + LF++ G + + I + A VT+ + Y +F K L + + E Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 72 R 72 Sbjct: 75 L 75
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.2 bits (73), Expect = 0.007 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 18/147 (12%) Query: 45 LLLNGLLLAAAISIVHIVGMHAYHLFEAASSNVPLITLAFGISAVLSSVAIWLTSRFTLP 104 LLL G+++ S++ VG H++ + + A + V+ VA ++ Sbjct: 81 LLLFGIIINCFGSVIGFVG-HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGK 139 Query: 105 IFRLILSSVIMGIGISASY---YVSMLGWNIDIYKKDYTSFLILFSVLIAMSGSGLAFLL 161 F LI S V MG G+ + + W S+L+L ++ ++ L Sbjct: 140 AFGLIGSIVAMGEGVGPAIGGMIAHYIHW----------SYLLLIPMITIITV----PFL 185 Query: 162 AYKLKESERHRISLKLAFAVMMTLSIM 188 LK+ R + + ++M++ I+ Sbjct: 186 MKLLKKEVRIKGHFDIKGIILMSVGIV 212
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 0.005 Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 293 AYGAPKAISSFVIPTGYSFNLDGSTLYQSIAAIFIAQLYGI 333 + A ++ + TGY + +T+++S I + + Sbjct: 186 SNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAM 226
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.2 bits (65), Expect = 0.027 Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 333 EQTQADEEEAQAAIQEGIAKAEKEEKIVTDEIAQPYKE 370 +Q Q +++AQA QE +A A +D+IAQ YK+ Sbjct: 343 QQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKD 380
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 29.1 bits (65), Expect = 0.028 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 288 LDEIEDMIRNSNQWAKVVPNTREASM-----TDLTPVAVT-GTLTVPVGR 331 + EIE++ ++ AKVV N R ++ ++ VAV+ GTLTV V Sbjct: 247 MAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTE 296
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 30.6 bits (69), Expect = 0.006 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 21/92 (22%) Query: 13 IQYRGWQTQQPGVASVQETI--ERVLSKIADEPITL-HGAGRTDAGVHATNMVAHFDTTA 69 I YR + PGVA++ + + + + ++ + + A R A + A A Sbjct: 199 IHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRASA---QARVEADPSLNA 255 Query: 70 I----RPERGWIMGANSQLPKDISIQWIKQMD 97 I PER + + I +D Sbjct: 256 IIVRDSPER-----------MPMYQRLIHALD 276
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 82.6 bits (204), Expect = 3e-18 Identities = 81/391 (20%), Positives = 128/391 (32%), Gaps = 103/391 (26%) Query: 406 IMGHVDHGKTSLLDRIRRSKVAAGEAG------------------GITQHIGAYHVETDK 447 ++ HVD GKT+L + + + A E G GIT G + + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 448 GIITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTAEAIDHARAAGTPIIVAI 507 + +DTPGH F + R D +L+++A DGV QT R G P I I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 508 NKMDKESADPDRVL---------------------NELTTKEIVPEEW------------ 534 NK+D+ D V N T E+W Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 535 -----------------------GGDVPVAKVSAHTGQGIDELLDLILIQSELMELKASA 571 PV SA GID L+++I ++ Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245 Query: 572 EGAAQGVVIEARVDKGRGAVTSILVQNGTLNIGDLVLAGSSYGRVRAMSDENGKPIKSAG 631 + G V + + R + I + +G L++ D V +S++ I Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR----------ISEKEKIKITEMY 295 Query: 632 PSIPVEILGLPEAPMAGDEVLVVNDEKKAREVADARADREREKRIERQSAMRLENIMASM 691 SI E+ + +A +G+ V++ N+ K V + +RIE Sbjct: 296 TSINGELCKIDKA-YSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPL----------- 343 Query: 692 GKKDVPTVNVVLRTDVRGTLEALNAALHELS 722 P + + E L AL E+S Sbjct: 344 -----PLLQTTVEPSKPQQREMLLDALLEIS 369
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 95.4 bits (237), Expect = 4e-29 Identities = 45/98 (45%), Positives = 66/98 (67%) Query: 1 MHSFVLVVHIILAVLMIALILVQHGKGADAGASFGGGGAATVFGASGSGNFLTRVTAILT 60 M+ +LVV +I+A+ ++ LI++Q GKGAD GASFG G +AT+FG+SGSGNF+TR+TA+L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 61 ALFFVTSLTLAVFAKKQTTEAYSLKTVQTTAPAQTTSP 98 LFF+ SL L +T + + + A + T P Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQP 98
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 398 bits (1024), Expect = e-139 Identities = 119/409 (29%), Positives = 219/409 (53%), Gaps = 12/409 (2%) Query: 9 MPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEG-------L 61 M + Y+ +D +G K +G A + A+ LR++G+ ++ E R + + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 62 FKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTF 121 K +++T D+ + TRQLAT++ A +PL + + VA+ E P + +++ ++ +V G + Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 122 ASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKIKKAMKYPATVI 181 A A++ +P F+ L+C++V +GE SG L+ +L+R+A Y E+ + ++ +I++AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 182 VVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEY--WFIMIIAIGAVI 239 VVAI V IL+ VVP + F LP T++++ MS ++ + W ++ + G + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 240 AAFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALEST 299 + R +K R + L LP+ G + ARY+RTL+ A+ VPL+ A+ + Sbjct: 241 FRVM---LRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRIS 297 Query: 300 AGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKV 359 +N + + V G L A+ + FP M M+A GE SG LDSML++ Sbjct: 298 GDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERA 357 Query: 360 ATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLPIFQMGSVV 408 A + E + + + EPL++ + +V +V+A+ PI Q+ +++ Sbjct: 358 ADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 322 bits (826), Expect = e-113 Identities = 147/286 (51%), Positives = 187/286 (65%), Gaps = 2/286 (0%) Query: 1 MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPII 60 M ++ + V L SL IGSFLNVVI+R P M+E++WQ E + NP+ + Sbjct: 1 MALLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGV 60 Query: 61 DHEKLTLSKPASSCPACQQPIRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLC 120 D L P S CP C PI +NIP++SWL LRG+C CQ PIS RYP +ELLT L Sbjct: 61 DEPPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALL 120 Query: 121 SLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTS 180 S+ V + P L L+LTWVL+ALTFID D LLPD+ TLPL GL N + S Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVS 180 Query: 181 PNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL 240 A+ G + G+L LW +Y+ FK++TGKEGMGYGDFKLLAALGAW+G LP+++LLSSL Sbjct: 181 LGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL 240 Query: 241 LGAIIGIILLKLRNDN--QPFAFGPYIAIAGWVAFLWGDQIMKIYL 284 +GA +GI L+ LRN + +P FGPY+AIAGW+A LWGD I + YL Sbjct: 241 VGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 32.4 bits (73), Expect = 0.001 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%) Query: 30 LKGRDDQRLQKILQLAEPFGISVQK-ASRDSLEKLAGL-PFHQGVVAAVRPHPTLNEKDL 87 L+ + ++IL+L ISV A D L + L P +V +R L KDL Sbjct: 86 LEDEALPKAKQILKL-----ISVHGGALEDFLRQARSLFPDPSDLVLVLRE--LLRRKDL 138 Query: 88 DQLLTETPDALLLALDQVTDPHNLGACIRTA 118 ++++ + ++LL +++ TDP L A I A Sbjct: 139 EEIVRKKLESLLKHVEEQTDPKTLKAGINCA 169
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.005 Identities = 43/239 (17%), Positives = 91/239 (38%), Gaps = 5/239 (2%) Query: 155 AEANDVREAYSTWQRNIRQHQAALDAQATRLQHIATLELQIEELEEVIQTDYKEIEQEFD 214 A A + + + A T A LE + ELE+ ++ + Sbjct: 222 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSA 281 Query: 215 RLSHHEHIMQDCSYSLNALDEAEQNITQEMSSIIRRLESHAGRSEQLSEIYNSLLNAQSE 274 ++ E L+ Q + S+ R L++ +QL + L Sbjct: 282 KIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 341 Query: 275 IDDATSNLRQFIDRQSFDPERMEELNSKLEVFHRLARKYRT----QPETLKEEYETWQSE 330 + + +LR+ +D +++E + KLE ++++ R + +E + + Sbjct: 342 SEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKA 401 Query: 331 LEQLH-QLEDPETLAEQVEKSHQEFLEKAQHLDNIRREAAAPLAKQLTEQVKPLALPEA 388 LE+ + +L E L +++E+S + ++ L A L ++L +Q + LA A Sbjct: 402 LEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRA 460
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 75.3 bits (185), Expect = 2e-20 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 5/126 (3%) Query: 21 SAEVVRSGSPLDIVLWVIAIALLLSATMVNQHLPAYWAPANDVWVRVGVIFACIVVALGL 80 + E SG L+ + WV+ +ALLL A + N P +R + I A G+ Sbjct: 4 NTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLP-----LRALAVVILIAAAGGV 58 Query: 81 LYATHQGKGFVRLLKDARVELRRVTWPTKQETVTTSWQVLLVVVVASLVLWCFDYGLGWL 140 T +GK V ++AR E+R+V WPT+QET+ T+ V V V SL+LW D L L Sbjct: 59 ALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRL 118 Query: 141 IKLIIG 146 + I G Sbjct: 119 VSFITG 124
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 427 bits (1098), Expect = e-142 Identities = 229/694 (32%), Positives = 344/694 (49%), Gaps = 75/694 (10%) Query: 12 ALLAAAPLIATVSSSAYAQTWKINLRDADLTAFINEVADITGKNFAVDPRVRGNVTVISN 71 LL A L+ A A+ + + + D+ FIN V+ K +DP VRG +TV S Sbjct: 13 TLLIFAALLFR---PAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSY 69 Query: 72 KPLNKDEVYDLFLGVLNVNGVVAIPSGN-TIKLVPDSNVKNSGIPYDSR-NRVRGDQIVT 129 LN+++ Y FL VL+V G I N +K+V + K + +P S GD++VT Sbjct: 70 DMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVT 129 Query: 130 RVIWLENTNPNDLIPALRPLMPQFAHMAAI--AGTNALIVSDRAANIYQLENIIRNLDGT 187 RV+ L N DL P LR L + + +N L+++ RAA I +L I+ +D Sbjct: 130 RVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNA 189 Query: 188 GQNDIEAITLQSSQAEEIITQLEAMSATGASKDFSGARI-RIIADNRTNRILIKGDPQTR 246 G + + L + A +++ + ++ + G+ + ++AD RTN +L+ G+P +R Sbjct: 190 GDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR 249 Query: 247 KRIRHMIEMLDVPSADRLGGLKVFRLKYASAKNLSEILQGLVTGQAVSSSNNSNNSSNSS 306 +RI MI+ LD A G KV LKYA A +L E+L G +SS+ S + Sbjct: 250 QRIIAMIKQLDRQQA-TQGNTKVIYLKYAKASDLVEVLTG------ISSTMQSEKQAAKP 302 Query: 307 NPINSLIGNNQNSGSNTSGSNGASISTPAINLNGNSNSSNQNNITSFNQNGVSIIADNAQ 366 + I A Sbjct: 303 VAAL--------------------------------------------DKNIIIKAHGQT 318 Query: 367 NSLVVKADPQLMREIESAIQQLDVRRQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIG 426 N+L+V A P +M ++E I QLD+RR QVL+EA I EV D LGIQWA + G Sbjct: 319 NALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA----NKNAG 374 Query: 427 LLSFSNVGASLSSIAAGYLSGGSAGA-ASAIANGANKGNGATLGLGNFDNSRKAYGALIQ 485 + F+N G +S+ AG G +S++A+ + NG G + + L+ Sbjct: 375 MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGN-----WAMLLT 429 Query: 486 ALKTNTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVT 545 AL ++TK+++L+TPSIVT+DN EA VGQ VP +TGS TT+ N + TVERK VG+ Sbjct: 430 ALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGD--NIFNTVERKTVGIK 487 Query: 546 LKVVPHIGEGGTVRLEVEQEVSAVQDSRGQAA---DLVTSKRAIKTAVLAEHGQTVVLGG 602 LKV P I EG +V LE+EQEVS+V D+ + + R + AVL G+TVV+GG Sbjct: 488 LKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGG 547 Query: 603 LVSDDTSLSRQGIPGLSSIPYVGRLFRSDNRSNVKRNLLVFIHPTIVGDANDVRRLSQQR 662 L+ S + +P L IP +G LFRS ++ KRNL++FI PT++ D ++ R+ S + Sbjct: 548 LLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQ 607 Query: 663 YNQLYSLQL-AMDKNGNFAKLPEQVDDIYNQKMT 695 Y Q K N A L + + +IY ++ T Sbjct: 608 YTAFNDAQSKQRGKENNDAMLNQDLLEIYPRQDT 641
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 62.7 bits (152), Expect = 1e-13 Identities = 57/274 (20%), Positives = 98/274 (35%), Gaps = 33/274 (12%) Query: 19 LSVVVLAILILWLCWKLASFFWLVIAP---PQLMQFDRVELGSQQPQIPNIST-FSLFNE 74 + ++ +L+L C +LA FW + P P QQP N T F + E Sbjct: 14 IRRILFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPAQARQQPVTLNDFTLFGVSPE 73 Query: 75 P----------SANAAQESVNLELQGVMVGYPNRFSSAVIKIDNTAERYRVGETIGSTSY 124 +N ++NL L GVM G + S A+I DN V E + + Sbjct: 74 KNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGVNEEVPGYNA 133 Query: 125 QLAEVYWDHVVLSQGNGSTRELQFKGLPNGLYQPMTPDASQQSATPSQPTEPMNTAQQAL 184 ++ + D VVL G Y+ + + + S + P +N Q Sbjct: 134 KIVSIRPDRVVLQY--------------QGRYEVLGLYSQEDSGSDGVPGAQVNEQLQQR 179 Query: 185 GQAIQQMQGNREQYLRDMGVSGNSGEGYEVTERTPTALRNKLGLRPGDRIVSLNGQTVGQ 244 + + D N +GY + + ++GL+ D V+LNG + Sbjct: 180 ASTTMSDYVSFSPIMND-----NKLQGYRLNPGPKSDSFYRVGLQDNDMAVALNGLDLRD 234 Query: 245 GQTDVQLLEQARRAGQVKIEIKRGDQVMTIQQNF 278 + + +E+ + ++R Q I F Sbjct: 235 AEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 82.2 bits (203), Expect = 2e-20 Identities = 49/225 (21%), Positives = 79/225 (35%), Gaps = 21/225 (9%) Query: 23 VVSTHPIYLIAKEITKGVEEPQLLLQ-GQSGHDVQLTPAHRKAINDASLVIWLGKAHE-- 79 V + I I K I + ++ GQ H+ + P K ++A L+ + G E Sbjct: 36 VATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETG 95 Query: 80 --APLNKLLSN-----NKKAIALLDSGILSILPQRNTRGAALPNTVDTHVWLEPNNAVRI 132 A KL+ N NK A+ S + ++ G D H WL N + Sbjct: 96 GNAWFTKLVENAKKTENKDYFAV--SDGVDVIY---LEGQNEKGKEDPHAWLNLENGIIF 150 Query: 133 GFFIAALRSQQHPENKAKYWNNANTFARNMLQAAQAYDS-----SSNGKPYWSYHDAYQY 187 IA S + P NK Y N + + + + + K + A++Y Sbjct: 151 AKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKY 210 Query: 188 LERSLNLKFAGALTDDPHVAPTAAQIKYLND-SRPKAQMCLLAES 231 ++ + A + T QIK L + R L ES Sbjct: 211 FSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVES 255
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.002 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%) Query: 31 KVDFALHENEIVTLIGPNGAGKSTLIKVLLG 61 K D+++ L G G GKSTLI L+G Sbjct: 594 KFDYSV------VLEGTGGIGKSTLINTLVG 618
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 29.8 bits (67), Expect = 0.031 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 124 GVFISYPDRDVIDDILQNVNKNNVKVIVITDGERILGLGDQGIGGMGIPI 173 G I+Y R+ + + + +N +KV I E L G G M +P+ Sbjct: 360 GEIIAY-SRNHVTN--KLFEENGIKVHRIPSSE--LSRGRGGPRCMSMPL 404
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.032 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 22/76 (28%) Query: 92 NADQRF------------AILDQIQAQKESFGRSQSNAAKKIQVEFVSANPTSSLHVGHG 139 AD+RF A+L ++ A E R + + V +P S H+ G Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDL----VDYSPVSEKHLADG 112 Query: 140 RGAAYGMTVANLLEAT 155 MTV L A Sbjct: 113 ------MTVGELCAAA 122
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 144 bits (365), Expect = 5e-45 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 10/218 (4%) Query: 29 TTEVGRKADKNASPIQKISYVLGYEVAQQTPP---ELDTKAFVQGIHDARNKQPSAYTQE 85 T A + K+SY +G ++ + +++ +G+ D + T+E Sbjct: 17 TAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEE 76 Query: 86 DLKAAVAAYEKELQQK--MQHQDKPEQAGTATDSADAQFLAENKTKAGVKTTASGLQYII 143 +K ++ ++K+L K + K E+ D+ FL+ NK+K G+ SGLQY I Sbjct: 77 QMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDA----FLSANKSKPGIVVLPSGLQYKI 132 Query: 144 TKEGTGKQPTAQSVVKVHYEGRLINGQIFDSSYKRGQPVEFPLNQVIPGWTEGLQLMKEG 203 GTG +P V V Y G LI+G +FDS+ K G+P F ++QVIPGWTE LQLM G Sbjct: 133 IDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAG 192 Query: 204 GKATFFIPSNLAYGPQELPG-IPANSTLIFDVELISVK 240 F+P++LAYGP+ + G I N TLIF + LISVK Sbjct: 193 STWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 179 bits (454), Expect = 2e-58 Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 11 VIAASTMSLSV---FAAAPITNKSPAKDQFSYSYGYLMGRNNTDALTDLNLDIFYQGLQE 67 ++ A+ M L++ AA T+ + KD+ SYS G +G+N + D+N D+ +G+Q+ Sbjct: 5 LVTAAIMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQD 64 Query: 68 GAQNKTARLTDEEMAKAINDYKKTLEAKQLVEFQKQGQQNAQAGAAFLAENAKKSGVVTT 127 G LT+E+M ++ ++K L AK+ EF K+ ++N G AFL+ N K G+V Sbjct: 65 GMSGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVL 124 Query: 128 KSGLQYQVLKEGSGKTPKATSRVKVNYEGRLLDGTVFDSSIARNHPVDFQLNQVIAGWTE 187 SGLQY+++ G+G P + V V Y G L+DGTVFDS+ P FQ++QVI GWTE Sbjct: 125 PSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTE 184 Query: 188 GLQTMKEGGKTRFFIPAKLAYGEVGAGDSIGPNSTLIFDIELLQV 232 LQ M G F+PA LAYG G IGPN TLIF I L+ V Sbjct: 185 ALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.3 bits (71), Expect = 0.012 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 215 IPPKVDFKHEGVERILKL---MLPALFGVSVTQINLLLNTIWASFMQDGSVSWLYSAERM 271 +P + + G+ +L PAL +S + L L ++ S+ SV M Sbjct: 850 LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV--------M 901 Query: 272 TELPLGLIGVAIGTVILPSLSARHAEQDQAKFRSMIDWAAKV--IVLVGLPASIALFMLS 329 +PLG++GV + + F D V + +GL A A+ ++ Sbjct: 902 LVVPLGIVGVLLAATL---------------FNQKNDVYFMVGLLTTIGLSAKNAILIVE 946 Query: 330 ----------TPIIQALFQRGEFDLRDTQMTALALQCMSAGVISFML 366 +++A LR MT+LA GV+ + Sbjct: 947 FAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLA---FILGVLPLAI 990
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 28.9 bits (64), Expect = 0.012 Identities = 9/45 (20%), Positives = 16/45 (35%) Query: 58 VNALISAYDNTVQVTWLKQEGDRVAANEAFLKLAGSARSLLTVER 102 +N + A + T + +R KL+ L+ V R Sbjct: 85 INQIAKAANRTHDPAYHSFMAERKVLGLELSKLSAVLAPLMEVSR 129
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 6 ERKQQSRQALLDAALHLSTSGRSFSSISLREVAREVGLVPTAFYRHFQDMDELGKELVDQ 65 + Q++RQ +LD AL L S + SS SL E+A+ G+ A Y HF+D +L E+ + Sbjct: 7 QEAQETRQHILDVALRL-FSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 66 VALHLKSVLHQL 77 ++ + + Sbjct: 66 SESNIGELELEY 77
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 7e-12 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 16 RKEKILSVAEKLLLENN-QEITLDELVAELDIAKGTLYKHFRSKNELLLELIIQNEKQIL 74 ++ IL VA +L + +L E+ + +G +Y HF+ K++L E+ +E I Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 75 EISQ 78 E+ Sbjct: 72 ELEL 75
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.0 bits (65), Expect = 0.013 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%) Query: 63 EPHMQTWLKQIPSDVRFVRTPAAMNKVWEQGARTYYTSEALGVRKRTHL 111 E + +P D R TPA+M R TS+ L R + L Sbjct: 162 ETELNEA---LPGDARDTTTPASMAATL----RKLLTSQRLSARSQRQL 203
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.4 bits (216), Expect = 8e-23 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 6/203 (2%) Query: 13 LKDRIILITGAGDGIGRAAALSYALHGATVVLHGRTLNKLEVIYDEIEGLGAPQPAILPL 72 ++ +I ITGA GIG A A + A GA + KLE + ++ A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA-FPA 64 Query: 73 QLSSASDRDYDFLVSTLEKQFGRLDGILHNAGILGERVELAH-YPAEVWDDVMAVNLRAP 131 + ++ D + + +E++ G +D +++ AG+L R L H E W+ +VN Sbjct: 65 DVRDSAA--IDEITARIEREMGPIDILVNVAGVL--RPGLIHSLSDEEWEATFSVNSTGV 120 Query: 132 FALTQALLPLLQKSENASVVFTSSGVGREARALWGAYSVSKVAIEAVSKIFAAEHTYPNI 191 F ++++ + + S+V S R AY+ SK A +K E NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 192 RFNCINPGATRTAMRAKAYPEED 214 R N ++PG+T T M+ + +E+ Sbjct: 181 RCNIVSPGSTETDMQWSLWADEN 203
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.014 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 367 RSAEIACVAVHPSYRKSNRGSQILQFLEEKAKQQGIRQLFVLTTR----TAHWFLEHGFH 422 A I +AV YRK G+ +L E AK+ L + T H++ +H F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 423 QVSVD-----DLPNAR-QALYNYQR 441 +VD + P A A++ Y + Sbjct: 148 IGAVDTMLYSNFPTANEIAIFWYYK 172