>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 88.3 bits (219), Expect = 3e-21 Identities = 74/380 (19%), Positives = 145/380 (38%), Gaps = 10/380 (2%) Query: 8 RSTFALSSIFALRMLGLFMIIPVFSVVGQSYQYAT--PALIGLAVGIYGLSQAILQIPFS 65 R + S AL +G+ +I+PV + + ++ A G+ + +Y L Q Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 66 LLADRFSRKPLVVFGLLLFAIGGAIAGLSDTIYGVIIGRAIAG-AGAVSAVVMALLADVT 124 L+DRF R+P+++ L A+ AI + ++ + IGR +AG GA AV A +AD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 125 REEQRTKAMAAMGMSIGLSFVVAFSLGPWLTSLVGISGLFFVTTIMGLIAIAMLLLVPKV 184 ++R + M G V LG + + F + GL + L+P+ Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 185 TRHHRNYQQGYMAQLKQVIQMGDLNRLHVSVFALHLLLTAMFIYVPSQLIEFAHIPLA-S 243 + R + + + ++ A+ ++ + + + F Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 244 HGLVYLPLLVISLFFAFPSIIIAEKYRKMRGIFLTAITGILA---GLLLLIFGYQSKYVL 300 + + L + + +I G + G++A G +LL F + Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 301 LAGLGIFFIAFNVMEALLPSWLSKSAPIQSKATAMGVNASSQFLGAFFGGTLGGQLLMLH 360 + + + + L + LS+ + + G A+ L + G L + Sbjct: 305 P--IMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Query: 361 -NTAIGWSVLAGIAIIWLLI 379 T GW+ +AG A+ L + Sbjct: 363 ITTWNGWAWIAGAALYLLCL 382
>cloacin#Cloacin signature. Length = 551 Score = 31.2 bits (70), Expect = 0.002 Identities = 20/54 (37%), Positives = 23/54 (42%) Query: 130 NAPQQGGGYQNNNQGGGYGQNNGGYGGQGGFGNGGNSPQGGGFAPKAPQQPASA 183 N P GG + GGG G NGG G G G+G AP A PA + Sbjct: 43 NNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96 Score = 30.8 bits (69), Expect = 0.003 Identities = 18/50 (36%), Positives = 20/50 (40%) Query: 135 GGGYQNNNQGGGYGQNNGGYGGQGGFGNGGNSPQGGGFAPKAPQQPASAP 184 G +NN GGG G GG G GGN GGG +AP Sbjct: 38 GWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAP 87
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.6 bits (66), Expect = 0.005 Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 9 AKGLTRERQRAGLSLAEVARRAGVAKSTL 37 A L ++ + SL E+A+ AGV + + Sbjct: 20 ALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 40.8 bits (95), Expect = 1e-06 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 24/161 (14%) Query: 7 RLDKDNAAVLLVDHQAGLLSLVRDIDP--DKFKNNVLAVANAAKYFNLPTILTTSFET-- 62 D + A +L+ D Q + + N+ + N +P + T + Sbjct: 25 VPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQN 84 Query: 63 -----------GPNGPLVPELKEIHPDAPFIPRPGQI-------NAWDNEDFVKAVKATG 104 GP P ++I P + +A+ + ++ ++ G Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKI--ITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEG 142 Query: 105 KKQLIIAGVVTEVCVAFPALSALAEGFEVFVITDASGTFNE 145 + QLII G+ + A A E + F + DA F+ Sbjct: 143 RDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL 183
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 53.3 bits (128), Expect = 7e-10 Identities = 70/362 (19%), Positives = 131/362 (36%), Gaps = 48/362 (13%) Query: 55 LPAFSQSFQISPASSSLALSLTTAFLAISIVLSSAFSQAIGRRGVIFTSMLCAAILNIVS 114 LP + F PAS++ + +I + S +G + ++ ++ +++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 115 MFTPNWHSLLI-ARALEGLLLGGVPAVTMAWIAEEIAPEHLGKTMGLYIAGTAFGGMMGR 173 ++ SLLI AR ++G PA+ M +A I E+ GK GL + A G +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 174 VGMGILVEYFSW---------------------------RTALGLLGAICFICSIAFLKL 206 G++ Y W + + G I I F L Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 207 LPVSRN--FVQKKGLNLGFHIQMWRAH---------LSNTKLLRLFAIGFLLTSV---FV 252 S + F+ L+ ++ R N + G ++ FV Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 253 TLFNYATFRLSGAPYSLSQTQISLIFLSYSFGMVSSSLAGSLADRFGKKTMMMSGFALMI 312 ++ Y + S ++ +IF ++ + G L DR G ++ G + Sbjct: 277 SMVPYMMKDVHQ--LSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS 334 Query: 313 LGSL---MTLLSSLFGIIIGIAFITTGFFITHSLTSSSVGAESKQAKAHAS-SLYLLFYY 368 + L L ++ + + I I F+ G T ++ S+ V + KQ +A A SL + Sbjct: 335 VSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394 Query: 369 MG 370 + Sbjct: 395 LS 396
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 5e-09 Identities = 14/65 (21%), Positives = 22/65 (33%) Query: 5 EASFRALRVLHTAKNLFNQYGFHKVGVDRIIADSQIPKATFYNYFHSKERLIQMSLTFQT 64 EA +L A LF+Q G + I + + + Y +F K L Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 DALKE 69 + E Sbjct: 68 SNIGE 72
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.001 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%) Query: 90 EMAPPAAPTDAVPPAPNQAAPAPQD----PNTPPPAANPNQSADPMAKDGA-LPA 139 E+A A + P+ A P + P PNQ+ PM + LP+ Sbjct: 454 ELAKLRAGKASDSQTPD-AKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPS 507
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 99.6 bits (248), Expect = 7e-28 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 11/121 (9%) Query: 48 TLGLPERLLFDFNDATLKQSHEAELTRLANQLNKYDLN--KLKIVGHTDDVGNPEYNQKL 105 L +LF+FN ATLK +A L +L +QL+ D + ++G+TD +G+ YNQ L Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGL 273 Query: 106 SEERAQSVANLFLTHGFKKENIYVIGRGSTQPYVPNTTNENR---------AINRRVAIV 156 SE RAQSV + ++ G + I G G + P NT + + A +RRV I Sbjct: 274 SERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333 Query: 157 I 157 + Sbjct: 334 V 334
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.2 bits (68), Expect = 0.018 Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 179 YKYTVGQPFIYPRNDLNYAENFLHMM 204 Y T G+P PR + + +M Sbjct: 610 YHVTTGEPVCQPRRPNSRIDKVRYMF 635
>INTIMIN#Intimin signature. Length = 939 Score = 52.8 bits (126), Expect = 4e-08 Identities = 70/378 (18%), Positives = 110/378 (29%), Gaps = 21/378 (5%) Query: 641 VEAIATDPAGNPSLPGTATVDAVGPNTDGVNFTVDSVTADNVINASEASGNVTVTGVLKN 700 V A A D GN S T+ + V TAD ++ + +T T +K Sbjct: 527 VTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKK 586 Query: 701 VPADAANTVVTVVINGQTYTATVDSTAGTWTVSVPGSDLTADADKTIDAKVTFTDAAGNS 760 AN V+ I + T +A + + G V A + Sbjct: 587 NGVAQANVPVSFNIV----SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMT 642 Query: 761 SSVNDTQTYTIDTTAPDAPVINPVNATDPITGTAEPGSTVTVTYPDGSTTTVVAGPDGTW 820 S++N +D T I D T A +T T V+ + T+ Sbjct: 643 SALNANAVIFVDQTKASITEIKA----DKTTAVANGQDAITYTVKVMKGDKPVSNQEVTF 698 Query: 821 TVPNPGLNDGDKVTAIATDPAGNPSLPGTAIVDAVGPNTDGVNFTVDSVTADNVINASEA 880 T G A T V V V + + + Sbjct: 699 TT-TLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTID 757 Query: 881 SGNVTV--TGVLKNVPADAANTVVTVVINGQTYTATVDSTAGTWTVSVPGSGLTADADKT 938 GN+ + TGV +P V + A+ + TW + P + Sbjct: 758 DGNIEIVGTGVKGKLPT------VWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQ 811 Query: 939 IDAKVTFTDAAGNSSSVNDTQTYTIDTTAPDAPVINPVNGTDPITGTAEPGSTVTVTYPD 998 + K T SS N T TYTI T P++ ++ ++ A Sbjct: 812 VTLKEKGTTTISVISSDNQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP 868 Query: 999 GSTTTVVAGPDGTWTVPN 1016 S+ + W N Sbjct: 869 -SSQNELENVFKAWGAAN 885 Score = 52.4 bits (125), Expect = 6e-08 Identities = 68/340 (20%), Positives = 107/340 (31%), Gaps = 32/340 (9%) Query: 361 VTAVATDPAGNTSGPGTAIVDAVAPTVALNDVLTNDSTPALTGTVNDPTATVVVK--VDG 418 VTA A D GN+S + ++ ++ V D T T D T + V Sbjct: 527 VTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKK 586 Query: 419 IDYPAVNNGDGTWTLADNTLPVL----TDGPHTITVTATDAAGNAGTDTGVVTVDTAAPN 474 N ++ + T+G TVT + T+A N Sbjct: 587 NGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALN 646 Query: 475 TAGVTFTIDSVTADNVINASE----AAGNVTITGVLKNIPADA--TNTAVTVVINGVTYN 528 V F + + I A + A G IT +K + D +N VT + Sbjct: 647 ANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLS 706 Query: 529 ATVDKTAGTWTVSVPGSGLTADADKTIDAKVTFTDAAGNSSSVNDTQTYTLDTTAPNAPV 588 + +KT V + T + A+V+ + V T T+D Sbjct: 707 NSTEKTDTNGYAKVTLTSTTP-GKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIE--- 762 Query: 589 IDPVNGTDPITGTAEPGSTVTVTYPNGDTATVVAGPDG--SWSVPNPGLNDGDEVEAIAT 646 I GT G TV G +G +G +W NP + D T Sbjct: 763 ---------IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVT 813 Query: 647 DPAGNPSLPGTATVDAVGPNTDGVNFTVDSVTADNVINAS 686 GT T+ + + +T+ + + V N S Sbjct: 814 -----LKEKGTTTISVISSDNQTATYTIATPNSLIVPNMS 848 Score = 49.7 bits (118), Expect = 4e-07 Identities = 69/379 (18%), Positives = 111/379 (29%), Gaps = 21/379 (5%) Query: 832 KVTAIATDPAGNPSLPGTAIVDAVGPNTDGVNFTVDSVTADNVINASEASGNVTVTGVLK 891 KVTA A D GN S + + V TAD ++ + +T T +K Sbjct: 526 KVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVK 585 Query: 892 NVPADAANTVVTVVINGQTYTATVDSTAGTWTVSVPGSGLTADADKTIDAKVTFTDAAGN 951 AN V+ I + T +A + + G V A Sbjct: 586 KNGVAQANVPVSFNIV----SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEM 641 Query: 952 SSSVNDTQTYTIDTTAPDAPVINPVNGTDPITGTAEPGSTVTVTYPDGSTTTVVAGPDGT 1011 +S++N +D T I D T A +T T V+ + T Sbjct: 642 TSALNANAVIFVDQTKASITEIKA----DKTTAVANGQDAITYTVKVMKGDKPVSNQEVT 697 Query: 1012 WTVPNPGLNDGDKVTAIATDPAGNPSLPGTAIVDAVGPNTDGVNFTVDSVTADNVINASE 1071 +T G A T V V V + + + Sbjct: 698 FTT-TLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTI 756 Query: 1072 ASGNVTV--TGVLKNVPADAANTVVTVVINGQTYTATVDSTAGTWTVSVSGSDLTADADK 1129 GN+ + TGV +P V + A+ + TW + + Sbjct: 757 DDGNIEIVGTGVKGKLPT------VWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSG 810 Query: 1130 TIDAKVTFTDAAGNSSSVNDTQTYTVDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYP 1189 + K T SS N T TYT+ T PN+ ++ ++ A Sbjct: 811 QVTLKEKGTTTISVISSDNQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKL 867 Query: 1190 DGTTATVVAGTDGSWSVPN 1208 ++ + +W N Sbjct: 868 P-SSQNELENVFKAWGAAN 885 Score = 48.5 bits (115), Expect = 9e-07 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 1905 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 1963 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 1964 DGVDYPAVNNG------DGTWTLADNTLPTLADGPHTITVTATDAAGNVGNDTAVVTIDT 2017 N GT L+ N+ T G T+T+ + V + Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 2018 VAPNAPVLDPINAT-------DPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSW--SVPN 2068 + NA + D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 2069 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSIPA-- 2119 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 2120 LTGTVNDPTATVVVNVDGVDYPAV-NNGDGTWTLADNTLPTL----------ADGPHTIT 2168 + V TV + V+ A NG TW A+ + ++ G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 2169 VTATDAAGNVGNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATV 2228 V ++D N TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 2229 VAGPDGSWSVPN 2240 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 48.1 bits (114), Expect = 1e-06 Identities = 76/373 (20%), Positives = 121/373 (32%), Gaps = 50/373 (13%) Query: 2249 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATIVV--N 2306 VTA A D GN+S T++ + + +D V D T T D T I Sbjct: 526 KVTARAYDRNGNSSNNVLLTIT--VLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 2307 VDGVDYPAVNNG------DGTRTLADNTLPTLADGPHTITVTATDAAGNVGNDTAVVTID 2360 V N GT L+ N+ T G T+T+ + V + Sbjct: 584 VKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTS 643 Query: 2361 TVAPNAPVLDPINAT-------DPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSW--SVP 2411 + NA + D + A +T T V+ + ++ ++ Sbjct: 644 ALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLG 703 Query: 2412 NPGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA- 2463 N + A +T+ PG VSA D+ AP V LT D Sbjct: 704 KLSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIE 762 Query: 2464 -LTGTVNDPTATVVVNVDGVDYPAV-NNGDGTWTLADNTLPTL----------ADGPHTI 2511 + V TV + V+ A NG TW A+ + ++ G TI Sbjct: 763 IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTI 822 Query: 2512 TVTATDAAGNVGNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTAT 2571 +V ++D N TA TI T PN+ ++ ++ A ++ Sbjct: 823 SVISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQN 872 Query: 2572 VVAGPDGSWSVPN 2584 + +W N Sbjct: 873 ELENVFKAWGAAN 885 Score = 47.8 bits (113), Expect = 1e-06 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 1561 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 1619 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 1620 DGVDYPAVNNG------DGTWTLADNTLPTLADGPHTITVTATDAAGNVGNDTAVVTIDT 1673 N GT L+ N+ T G T+T+ + V + Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 1674 VAPNAPVLDPINAT-------DPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSW--SVPN 1724 + NA + D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 1725 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 1775 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 1776 LTGTVNDPTATVVVNVDGVDYPAV-NNGDGTWTLADNTLPTL----------ADGPHTIT 1824 + V TV + V+ A NG TW A+ + ++ G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 1825 VTATDAAGNVGNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATV 1884 V ++D N TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 1885 VAGPDGSWSVPN 1896 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 47.8 bits (113), Expect = 1e-06 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 48/372 (12%) Query: 2593 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 2651 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 2652 DGVDYPAVNNG------DGTWTLADNTLPTLADGPHTITVTATDAAGNVGNDTAVVTIDT 2705 N GT L+ N+ T G T+T+ + V + Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 2706 VAPNAPVLDPINAT-------DPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSW--SVPN 2756 + NA + D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 2757 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 2807 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 2808 LTGTVNDPTATVVVNVDGVDYPAV-NNGDGTWTLADNTLPTL----------ADGPHTIT 2856 + V TV + V+ A NG TW A+ + ++ G TI+ Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 2857 VTATDAAGNVGNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATV 2916 V ++D N TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 2917 VAGPDGSWSVPN 2928 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 47.0 bits (111), Expect = 2e-06 Identities = 77/404 (19%), Positives = 123/404 (30%), Gaps = 66/404 (16%) Query: 1024 KVTAIATDPAGNPSLPGTAIVDAVGPNTDGVNFTVDSVTADNVINASEASGNVTVTGVLK 1083 KVTA A D GN S + + V TAD ++ + +T T +K Sbjct: 526 KVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVK 585 Query: 1084 NVPADAANTVVTVVINGQTYTATVDSTAGTWTVSVSGSDLTADADKTIDAKVTFTDAAGN 1143 AN V+ I + T +A + + SG V A Sbjct: 586 KNGVAQANVPVSFNIV----SGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEM 641 Query: 1144 SSSVNDTQTYTVDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAGTDGS 1203 +S++N VD + + D + A +T T V+ + + Sbjct: 642 TSALNANAVIFVDQTKASITEIKA----DKTTAVANGQDAITYTVKVMKGDKPVSNQEVT 697 Query: 1204 W--SVPNPGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTN 1254 + ++ N + A +T+ PG VSA D+ AP V LT Sbjct: 698 FTTTLGKLSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTI 756 Query: 1255 DSTPA--LTGTVNDPTATVVVNVDGVDYPAV-NNGDGTWTLADNTLPTLADGPHTITVTA 1311 D + V TV + V+ A NG TW A+ + + Sbjct: 757 DDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIAS------------ 804 Query: 1312 TDAAGNVGNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAG 1371 V + VT+ + + +T++V D TAT Sbjct: 805 ------VDASSGQVTL---------------------KEKGTTTISVISSDNQTATYTIA 837 Query: 1372 PDGSWSVPNPGNLVDGDTVTATATDPAGNTS--LPGTGTVSADI 1413 S VPN A + N LP + ++ Sbjct: 838 TPNSLIVPNMSK----RVTYNDAVNTCKNFGGKLPSSQNELENV 877 Score = 46.2 bits (109), Expect = 4e-06 Identities = 53/289 (18%), Positives = 93/289 (32%), Gaps = 26/289 (8%) Query: 3453 ADGPHTVSVTATDVAGNVSTPVTGTVTVDATAPTLAIT---TDDLALAAGEDAN----IT 3505 + V+ A D GN S V T+TV + + TD A A+ IT Sbjct: 521 GSNVYKVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAIT 579 Query: 3506 FTFSEAVAGFDVSDITVVGGTLTGLTTTDNITWTAVFTPDGTGTAPSIAVADGSYTDVAG 3565 +T + G +++ V ++G + +G+G A ++ + Sbjct: 580 YTATVKKNGVAQANVPVSFNIVSGTAVLSANSANT----NGSGKA-TVTLKSDK---PGQ 631 Query: 3566 NLGTGDVLDGTDGFIVDLVAPVVTFADVSTNDTTPALTGTIDDPTA-TVVVTVDGVDYPA 3624 + + + T + V V T T + A T V V D P Sbjct: 632 VVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKP- 690 Query: 3625 VNNGDGTWTLADNTLPVL-----ADGPHTVSVTATDVAGNVSTPVTGTVTVDATAPTLAI 3679 V+N + T+T L +G V++T+T ++ + V VD AP + Sbjct: 691 VSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEF 750 Query: 3680 TTD---DLALAAGEDANITFTFSEAVAGFDVSDITVVGGTLTGLTTTDN 3725 T D + + ++ GG + N Sbjct: 751 FTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSAN 799 Score = 45.8 bits (108), Expect = 6e-06 Identities = 72/372 (19%), Positives = 120/372 (32%), Gaps = 48/372 (12%) Query: 2937 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 2995 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 2996 DGVDYPAVNNG------DGTWTLADNTLPTLADGPHTITVTATDAAGNVGNDTAVVTIDT 3049 N GT L+ N+ T G T+T+ + V + Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 3050 VAPNAPVLDPINAT-------DPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSW--SVPN 3100 + NA + D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 3101 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 3151 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 3152 LTGTVNDPTATVVVNVDGVDYPAV-NNGDGTWTLADNTLPVL----------ADGPHTVS 3200 + V TV + V+ A NG TW A+ + + G T+S Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTIS 823 Query: 3201 VTATDAAGNVGNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATV 3260 V ++D N TA TI T PN+ ++ ++ A ++ Sbjct: 824 VISSD------NQTATYTIAT--PNSLIVPNMS-KRVTYNDAVNTCKNFGGKLP-SSQNE 873 Query: 3261 VAGPDGSWSVPN 3272 + +W N Sbjct: 874 LENVFKAWGAAN 885 Score = 45.8 bits (108), Expect = 6e-06 Identities = 58/295 (19%), Positives = 99/295 (33%), Gaps = 38/295 (12%) Query: 3833 ADGPHTVSVTATDVAGNVSTPVTGTVTVDATAPTLAIT---TDDLALAAGEDAN----IT 3885 + V+ A D GN S V T+TV + + TD A A+ IT Sbjct: 521 GSNVYKVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAIT 579 Query: 3886 FTFSEAVAGFDVSDITVVGGTLTGLTTTDNITWTAVFTPDGTGTAPSIAVADGSYTDVVG 3945 +T + G +++ V ++G + +G+G A ++ + VV Sbjct: 580 YTATVKKNGVAQANVPVSFNIVSGTAVLSANSANT----NGSGKA-TVTLKSDKPGQVVV 634 Query: 3946 NLGTGDVLDGTDGFIVDLVAPVVTFADVSTN-------DTTPALTGTIDDPTATVVVTVD 3998 + T ++ + A V F D + D T A+ D T V V Sbjct: 635 SAKTAEMTSALN-------ANAVIFVDQTKASITEIKADKTTAVANGQD--AITYTVKVM 685 Query: 3999 GVDYPAVNNGDGTWTLADNTLPVL-----ADGPHTVSVTATDVAGNVSTPVTGTVTVDAT 4053 D P V+N + T+T L +G V++T+T ++ + V VD Sbjct: 686 KGDKP-VSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVK 744 Query: 4054 APTLAITTD---DLALAAGEDANITFTFSEAVAGFDVSDITVVGGTLTGLTTTDN 4105 AP + T D + + ++ GG + N Sbjct: 745 APEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSAN 799 Score = 41.2 bits (96), Expect = 2e-04 Identities = 41/255 (16%), Positives = 79/255 (30%), Gaps = 28/255 (10%) Query: 4213 ADGPHTVSVTATDVAGNVSTPVTGTVTVDATAPTLAI-------TTDDLALAAGESANIT 4265 + V+ A D GN S V T+TV + + T D + A + IT Sbjct: 521 GSNVYKVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAIT 579 Query: 4266 FTFSEAVAGFDANDITLVGGTLSALVTTDNITWTAVFTPDGTGTAPSIAVADGSYTDLAG 4325 +T + G ++ + +S + +G+G A ++ + Sbjct: 580 YTATVKKNGVAQANVPVSFNIVSGTAVLSANSANT----NGSGKA-TVTLKSDK---PGQ 631 Query: 4326 NLGTGDVLDGTDGFVVDIVAPVVGFTNVTTNDDTPPLTGTIDDPTA-TVVVTVDGVDYP- 4383 + + + T + V V T T + A T V V D P Sbjct: 632 VVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPV 691 Query: 4384 -----ATNNGDGTWTLADNTLPSLIDGPHTVSVTATDPAGNVSIPATGTVTISSSSILAF 4438 G + + + +G V++T+T P + V+ + + A Sbjct: 692 SNQEVTFTTTLGKLSNSTEKTDT--NGYAKVTLTSTTPG---KSLVSARVSDVAVDVKAP 746 Query: 4439 DNTDHAVLSPQPSLV 4453 + L+ + Sbjct: 747 EVEFFTTLTIDDGNI 761 Score = 40.8 bits (95), Expect = 2e-04 Identities = 73/397 (18%), Positives = 120/397 (30%), Gaps = 73/397 (18%) Query: 1217 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 1275 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 1276 DGVDYPAVNNG------DGTWTLADNTLPTLADGPHTITVTATDAAGNVGNDTAVVTIDT 1329 N GT L+ N+ T G T+T+ + V + Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 1330 VAPNAPVLDPINAT-------DPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSW--SVPN 1380 + NA + D + A +T T V+ + ++ ++ Sbjct: 645 LNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGK 704 Query: 1381 PGNLVDGDTVTATATDPAGNTSLPGTGTVSA-------DITAPVVALDDVLTNDSTPA-- 1431 N + A +T+ PG VSA D+ AP V LT D Sbjct: 705 LSNSTEKTDTNGYAKVTLTSTT-PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEI 763 Query: 1432 LTGTVNDPTATVVVNVDGVDYPAV-NNGDGTWTLADNTLPTLADGPHTITVTATDAAGNV 1490 + V TV + V+ A NG TW A+ + + V Sbjct: 764 VGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIAS------------------V 805 Query: 1491 GNDTAVVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSWSV 1550 + VT+ + + +T++V D TAT S V Sbjct: 806 DASSGQVTL---------------------KEKGTTTISVISSDNQTATYTIATPNSLIV 844 Query: 1551 PNPGNLVDGDTVTATATDPAGNTS--LPGTGTVSADI 1585 PN A + N LP + ++ Sbjct: 845 PNMSK----RVTYNDAVNTCKNFGGKLPSSQNELENV 877 Score = 40.1 bits (93), Expect = 3e-04 Identities = 74/346 (21%), Positives = 113/346 (32%), Gaps = 31/346 (8%) Query: 3281 TVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA-TVVVNV 3339 VTA A D GN+S T++ ++ V +T+ + + + A T V Sbjct: 526 KVTARAYDRNGNSSNNVLLTITV-LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATV 584 Query: 3340 DGVDYPAVNNG------DGTWTLADNTLPTLADGPHTITVTATDAAGNVGN-DTAVVTID 3392 N GT L+ N+ T G T+T+ + V + TA +T Sbjct: 585 KKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSA 644 Query: 3393 TSLPVVSLDDLTTNDTTPALTGAIDDPTATVVVNVDGIDYPATNNGDGTWTLADNTLPVL 3452 + V D T T D T V D I Y Sbjct: 645 LNANAVIFVDQTKASITEIKA----DKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTT 700 Query: 3453 ADGPHTVSVTATDVAGNVSTPVTGTVTVDATAPTLAITTDDLALAAGEDANITFTFSEAV 3512 G + S TD G VT+ +T P ++ + ++ A + F Sbjct: 701 TLGKLSNSTEKTDTNG------YAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFF-TT 753 Query: 3513 AGFDVSDITVVGGTLTGLTTTDNITWTAVFTPDGTGTAPSIAVADGSYTDVAGNLGTGDV 3572 D +I +VG + G T + + V G G YT + N V Sbjct: 754 LTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN--------GKYTWRSANPAIASV 805 Query: 3573 LDGTDGFIVDLVAPVVTFADVSTNDTTPALTGTIDDPTATVVVTVD 3618 D + G V L T V ++D A T TI P + +V + Sbjct: 806 -DASSG-QVTLKEKGTTTISVISSDNQTA-TYTIATPNSLIVPNMS 848 Score = 35.8 bits (82), Expect = 0.006 Identities = 74/362 (20%), Positives = 118/362 (32%), Gaps = 74/362 (20%) Query: 1127 ADKTIDAKVTFTDAAGNSSSVNDTQTYTVDTVAPNAPVLDPINATDPVSGQAEPGSTVTV 1186 D GNSS+ N T TV N V+D + TD + + + Sbjct: 521 GSNVYKVTARAYDRNGNSSN-NVLLTITV---LSNGQVVDQVGVTDFTADKTSAKA---- 572 Query: 1187 TYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATA--------TDPAG------NTSLP 1232 DGT A T V V + V+ TA T+ +G + P Sbjct: 573 ---DGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKP 629 Query: 1233 GTGTVSADITAPVVALDD---VLTNDSTPALTGTVNDPTATVVVNVDGVDY-PAVNNGDG 1288 G VSA AL+ + + + ++T D T V D + Y V GD Sbjct: 630 GQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDK 689 Query: 1289 TWTLADNTLPTL------------ADGPHTITVTATDAA--------GNVGNDTAVVTID 1328 + + T T +G +T+T+T +V D ++ Sbjct: 690 PVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVE 749 Query: 1329 TVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAGPDG--SWSVPNPGNLVD 1386 +D N + G G TV G +G +G +W NP Sbjct: 750 FFTT--LTIDDGNIE--IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA---- 801 Query: 1387 GDTVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVN 1446 A+ +G +L GT + + ++D+ A T T+ P + +V N Sbjct: 802 ----IASVDASSGQVTLKEKGTTTISVI----------SSDNQTA-TYTIATPNSLIVPN 846 Query: 1447 VD 1448 + Sbjct: 847 MS 848 Score = 34.7 bits (79), Expect = 0.018 Identities = 67/342 (19%), Positives = 94/342 (27%), Gaps = 68/342 (19%) Query: 3329 NDPTATVVVNVDGVDYPAVNNGDGTWTLADNTLPTLADGPHTITVTATDAAGNVGNDTAV 3388 N+ T+ V + V + G + ADG IT TAT N A Sbjct: 540 NNVLLTITV----LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKK----NGVAQ 591 Query: 3389 VTIDTSLPVVSLDDLTTNDTTPALTGAIDDPTATVVVNVDGIDYPATNNGDGTWTLADNT 3448 + S +VS A+ A A NG G T+ Sbjct: 592 ANVPVSFNIVS---------GTAVLSANS----------------ANTNGSGKATVT--- 623 Query: 3449 LPVLADGPHTVSVTATDVAGNVSTPVTGTV--TVDATAPTLAITTDDLALAAGEDANITF 3506 L V + A S V A I D A IT+ Sbjct: 624 ---LKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITY 680 Query: 3507 TFSEAVAGFDVSDITVVGGTLTGLTTTDNITWTAVFTPDGTGTAPSIAVADGSYTDVAGN 3566 T VS+ +T+T T + T + Sbjct: 681 TVKVMKGDKPVSN--------------QEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTT 726 Query: 3567 LGTGDVLDGTDGFIVDLVAPVVTFADVSTNDTTPA--LTGTIDDPTATVVVTVDGVDYPA 3624 G V VD+ AP V F T D + + TV + V+ A Sbjct: 727 PGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKA 786 Query: 3625 V-NNGDGTWTLADNTLPVL----------ADGPHTVSVTATD 3655 NG TW A+ + + G T+SV ++D Sbjct: 787 SGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSD 828 Score = 33.5 bits (76), Expect = 0.039 Identities = 68/358 (18%), Positives = 116/358 (32%), Gaps = 51/358 (14%) Query: 2985 NDPTATVVVNVDGVDYPAVNNGDGTWTLADNTLPTLADGPHTITVTATDAAGNVGNDTAV 3044 N+ T+ V + V + G + ADG IT TAT V Sbjct: 540 NNVLLTITV----LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVP 595 Query: 3045 VTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAGPDGSWSVPNPGNL 3104 V+ + V+ A VL +A SG+A TVT+ V A S N + Sbjct: 596 VSFNIVSGTA-VLSANSANTNGSGKA----TVTLKSDKPGQVVVSAKTAEMTSALNANAV 650 Query: 3105 VDGDTVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVV 3164 + D A+ T+ + + A V D ++ T T+ + + Sbjct: 651 IFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNS-- 708 Query: 3165 VNVDGVDYPAVNNGDGTWTLADNTLPVLADGPHTVSVTATDAAGNVGNDTAVVTIDTVAP 3224 + +G + + + P V+A +V D ++ Sbjct: 709 --------TEKTDTNGYA-----KVTLTSTTPGKSLVSAR--VSDVAVDVKAPEVEFFTT 753 Query: 3225 NAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAGPDG--SWSVPNPGNLVDGDTV 3282 +D N + G G TV G +G +G +W NP Sbjct: 754 --LTIDDGNIE--IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPA-------- 801 Query: 3283 TATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATVVVNVD 3340 A+ +G +L GT + + ++D+ A T T+ P + +V N+ Sbjct: 802 IASVDASSGQVTLKEKGTTTISVI----------SSDNQTA-TYTIATPNSLIVPNMS 848 Score = 33.5 bits (76), Expect = 0.039 Identities = 74/367 (20%), Positives = 114/367 (31%), Gaps = 69/367 (18%) Query: 2297 NDPTATIVVNVDGVDYPAVNNGDGTRTLADNTLPTLADGPHTITVTATDAAGNVGNDTAV 2356 N+ TI V + V + G + ADG IT TAT V Sbjct: 540 NNVLLTITV----LSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT-----------V 584 Query: 2357 VTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGT-TATVVAGPDGSWSVPNPGN 2415 N PV I VSG A + T G T T+ + G V Sbjct: 585 KKNGVAQANVPVSFNI-----VSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAK-- 637 Query: 2416 LVDGDTVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTATV 2475 TA T ++ A IT + A + A+T TV Sbjct: 638 -------TAEMTSALNANAVIFVDQTKASITE-IKADKTTAVANGQDAITYTVKVMKGDK 689 Query: 2476 VVNVDGVDYPAVNNGDGTWTLADNTLPTLADGPHTITVTATDAA--------GNVGNDTA 2527 V+ V + G + + T +G +T+T+T +V D Sbjct: 690 PVSNQEVTF---TTTLGKLSNSTEK--TDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVK 744 Query: 2528 VVTIDTVAPNAPVLDPINATDPVSGQAEPGSTVTVTYPDGTTATVVAGPDG--SWSVPNP 2585 ++ +D N + G G TV G +G +G +W NP Sbjct: 745 APEVEFFTT--LTIDDGNIE--IVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANP 800 Query: 2586 GNLVDGDTVTATATDPAGNTSLPGTGTVSADITAPVVALDDVLTNDSTPALTGTVNDPTA 2645 A+ +G +L GT + + ++D+ A T T+ P + Sbjct: 801 A--------IASVDASSGQVTLKEKGTTTISVI----------SSDNQTA-TYTIATPNS 841 Query: 2646 TVVVNVD 2652 +V N+ Sbjct: 842 LIVPNMS 848
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.9 bits (124), Expect = 1e-10 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 2/105 (1%) Query: 5 ALPTRALYVVNKAIDLFHHRGFHLIGVDRIVKESEITKATFYNYFHSKERLIEICLMVQK 64 A TR +++ A+ LF +G + I K + +T+ Y +F K L + + Sbjct: 9 AQETRQH-ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 EKLQEQVIAMVEYDLGTP-AIDKLKKLYFLHTDLEGPYYLLFKAI 108 + E + G P ++ + ++ L + + L I Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEI 112
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.5 bits (198), Expect = 4e-20 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 2/185 (1%) Query: 7 VLITGASSGIGSVYADRFAQRGYHLILVARDTNRLDKISKDLQEKYGVQVEFIQADLSND 66 ITGA+ GIG A A +G H+ V + +L+K+ L+ + E AD+ + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVRDS 69 Query: 67 QDIRKI-EDVLKNDADIEILVNNAGIALNGNFLTQDRNEIEKLLTLNMTAVVRLSHAMSQ 125 I +I + + I+ILVN AG+ G + E E ++N T V S ++S+ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 126 SLIRKGKGAIINLGSVLGLAPEFGSTIYGASKSFIQFFSQGLHLELKDHGVHVQAVLPSA 185 ++ + G+I+ +GS P Y +SK+ F++ L LEL ++ + V P + Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 186 TKTEI 190 T+T++ Sbjct: 190 TETDM 194
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.4 bits (133), Expect = 7e-12 Identities = 19/76 (25%), Positives = 35/76 (46%) Query: 1 MKVSKTQVKENRDKIVEKATQLFRSKGYDGVGIAELMSSAGFTHGGFYKHFSSKTDLVTI 60 + +K + +E R I++ A +LF +G + E+ +AG T G Y HF K+DL + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 TAKYGLEQVLKRIEGL 76 + + + Sbjct: 62 IWELSESNIGELELEY 77
>PF04647#Accessory gene regulator B Length = 212 Score = 25.9 bits (57), Expect = 0.050 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 11/88 (12%) Query: 39 VVAVAYAFSPIDLIPDFIPILGFIDDAVILPILIWLAVRFTPQQVIFDAEQQAKEWLDEH 98 +V A+ + P + +L I L L++L P+ +I Sbjct: 86 LVFNVLAYIAHLIDPAYFQLLILIAFITSLLALLFLVPVDNPRNLI-----------SNT 134 Query: 99 EKRPKNYLVAVLIILIWLTLAVMAYFYF 126 E+R L +++++ ++ AY + Sbjct: 135 EQRKTLKLKTSMVLMVLFGGSIGAYRLY 162
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 109 bits (274), Expect = 4e-31 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 77 VHFDYDSSDLSTEDYQTLQAHAQFL--MANANSKVALTGHTDERGTREYNMALGERRAKA 134 V F+++ + L E L L + + V + G+TD G+ YN L ERRA++ Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 135 VQNYLITSGVNPQQLEAVSYGKEAPV---------NPGHDESAWKENRRVEINYEAV 182 V +YLI+ G+ ++ A G+ PV +RRVEI + + Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 72.8 bits (178), Expect = 1e-15 Identities = 56/363 (15%), Positives = 113/363 (31%), Gaps = 39/363 (10%) Query: 39 PEQPKKLTTVLVKPEDLPPPLAKEVEQPTVAENQAEEVLSPIVDETLPQNLPAAPPPP-- 96 PE K+ TV ++ P + + P+V N E P PP P Sbjct: 983 PEVEKRNQTV--DTTNITTPNNIQADVPSVPSNNEEI--------ARVDEAPVPPPAPAT 1032 Query: 97 ----------TAQQLAAQKQKAEQAQQAKLAEEKRKAEEAAKVKQAAEQQRLEEAQKQQA 146 ++Q + +K EQ A+ + A+EA +A Q + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 147 EAKRQAEAKARAEAEQKRKAEQNAKAEADAKARQKVTEEAKRKAETEARLKREAQKAENA 206 + + E K A E++ K AK E + K E K ++ + ++ A Sbjct: 1093 KETQTTETKETATVEKEEK----AKVETE-----KTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 207 KLQAQQEAKRKAEADAKAKQQKAAEDAKRKAESDAKAKQQAADNAKRKAEADAKAKQQKA 266 + + + + + +++ A+ + E+ + +Q ++ + Sbjct: 1144 EPARENDPTVNIK-EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 267 AEDAKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQKAAED 326 + + + K ++ ++ D A D + A Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNA--- 1259 Query: 327 AKRKAEADAKAKQQKAAEDARRKAEIEAEEKAASAKKAQEEAAQKKGEAKKIASSAKRDF 386 +DA+AK Q A + + + + + K +SS R F Sbjct: 1260 ----VLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRF 1315 Query: 387 EQK 389 K Sbjct: 1316 SSK 1318
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.8 bits (230), Expect = 9e-25 Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 23/248 (9%) Query: 3 ALVTGASAGFGYSISKKLIESGYKVIGCGRRAEKLEELQKQLG-ENFYPLVF--DMTDTA 59 A +TGA+ G G ++++ L G + EKLE++ L E + F D+ D+A Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 60 ---ENINKLFKELPNEFQIDQIDLLVNNAGLALGLEPADKADLDDWYTMIDTNVKGLVTV 116 E ++ +E + ID+LVN AG+ L ++W N G+ Sbjct: 71 AIDEITARIERE------MGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 117 TRLILPSMVKKKSGLIINMGSIAGTYPYPGGNVYGATKAFVEQFSLNLRADLAGTGVRVT 176 +R + M+ ++SG I+ +GS P Y ++KA F+ L +LA +R Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 177 NIEPG---------LCGGTEFSLVRFKGDQEKANSLYDKKNPILPEDIANTVAWIAS-QP 226 + PG L + KG E + K P DIA+ V ++ S Q Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 227 PHININRI 234 HI ++ + Sbjct: 244 GHITMHNL 251
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 109 bits (275), Expect = 2e-28 Identities = 67/349 (19%), Positives = 147/349 (42%), Gaps = 45/349 (12%) Query: 8 IAIDLGTSNSLVGIFENGQSKLINNPYGMKTTPSAIALDEQGQILIGQAALELRSRGKEV 67 ++IDLGT+N+L+ + GQ ++N PS +A+ + + + + G + Sbjct: 13 LSIDLGTANTLI--YVKGQGIVLNE-------PSVVAIRQDR----AGSPKSVAAVGHDA 59 Query: 68 LTSFKRLMGTS-------KRLKLGQQSFSAVELSSLILKS-LKQDVEQALQCEVEEAVIT 119 K+++G + + +K G + ++ +L+ +KQ + ++ Sbjct: 60 ----KQMLGRTPGNIAAIRPMKDG--VIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVC 113 Query: 120 VPAYFNDIQRQATISAAELAGLKVSRLINEPTAAALAYGLGQTQDSCFLIFDLGGGTFDV 179 VP ++R+A +A+ AG + LI EP AAA+ GL ++ + ++ D+GGGT +V Sbjct: 114 VPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEV 173 Query: 180 SIVELFDGITEVRASAGDNYLGGDDFVQLLMKQYWKQHATIFG-YTENTIPFDIETALRA 238 +++ L + + +GGD F + ++ + + ++ G T I +I +A Sbjct: 174 AVISLNGVVY-----SSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPG 228 Query: 239 RAQHSLHVLSKEAKTDLIFKWE-DKEATLEITQEEFAVWAEPLLLRLRR---PLERALRD 294 + V + + + + LE QE +++ L + L + + Sbjct: 229 DEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE 288 Query: 295 ARVLPQQVDQIIMVGGATRIPVVRKLVTKLFGRFPSTSVQPDEAIVRGT 343 +++ GG + + +L+ + G + P + RG Sbjct: 289 R--------GMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGG 329
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 103 bits (258), Expect = 2e-30 Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 10/154 (6%) Query: 43 VDKVELDRYLGVWYEVARKPAFFQKKCAYNVSATYTLNENGNIVVDNRCYDNQKQL-QQS 101 V EL+ YLG WYEVAR F++ + V+A Y + +G I V NR Y +K +++ Sbjct: 26 VSDFELNNYLGKWYEVARLDHSFERGLS-QVTAEYRVRNDGGISVLNRGYSEEKGEWKEA 84 Query: 102 IGEAFVVNPPYNTKLKVSFLPEAVRWIPIIRGDYWILKLD-EDYQTVLVGEPSRKYLWVL 160 G+A+ VN + LKVSF G Y + +LD E+Y V P+ +YLW+L Sbjct: 85 EGKAYFVNGSTDGYLKVSFFGP-------FYGSYVVFELDRENYSYAFVSGPNTEYLWLL 137 Query: 161 SRTPHPHKEVVDEYLNYAKTLGFDIRDIIHTEHK 194 SRTP + ++D+++ +K GFD +I+ + + Sbjct: 138 SRTPTVERGILDKFIEMSKERGFDTNRLIYVQQQ 171
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.003 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 15 EVSRVLQAL--ASSNQSQVAEQLGIDPSTLSR 44 E +L AL NQ + A+ LG++ +TL + Sbjct: 437 EYPLILAALTATRGNQIKAADLLGLNRNTLRK 468
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.6 bits (63), Expect = 0.014 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 14/70 (20%) Query: 1 MNAIVKIETPEQAYQVIEQMKEQLKDVKCSLLEMTSMIG--------DIEKHEGEFFFNF 52 +N +VK E + I+Q ++ LK + +LE+ S +G D+ +H+ Sbjct: 63 INNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDIDLVEHKE------ 116 Query: 53 LKSLSAQGKK 62 L+ LS + K Sbjct: 117 LQDLSEEEKN 126
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 0.047 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 5/167 (2%) Query: 932 KIQQTQDALDAQAKFLLQEVMTNKSYSKTKNALLNDDLDYRSLEKIVGKNFIGWDYEGKK 991 ++ AL +AK + + K S ++ ++ D + ++L + + D E K Sbjct: 176 AEEKRLAALSEEAKAV---EIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKT 232 Query: 992 LGKDKASQHLAKQDSYYNQLNKILGASPDAASKAIGDLSKFEDEAYKARAKTLEEIKQLQ 1051 L + A Y +L++++ A+ + + FE + A + E KQ Q Sbjct: 233 LAGKRNELAQASAK--YKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQ 290 Query: 1052 ATYDSETVARSKKREEEINKATILGQSNLIPKINERYDAEDKLAQKQ 1098 T + R +I KA +N I ++AE+ L + Q Sbjct: 291 VTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQ 337
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 30.8 bits (69), Expect = 0.012 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 9/124 (7%) Query: 255 VFPGNQGGPLMHAIAAKAICFKEAMSDDFKAYQQQVVKNAQAMAEVFIARGYDVVSGG-- 312 + NQG + ++ A A D K A+ + A+ +V S G Sbjct: 212 IDADNQGQLNITSVVAAINSKYFAAQYDKKQLTNVTFDTETAVKDALKAQKIEVSSVGYF 271 Query: 313 TDNHLFLLSL-IKQDVTGKDADAWLGAAHITVNKNSVPNDPRSPFVTS------GIRIGT 365 H F +++ + GK A + V VP+ ++ + R+GT Sbjct: 272 KAPHTFTVNVKATSNKNGKSATLPVTVTVPNVADPVVPSQSKTIMHNAYFYDKDAKRVGT 331 Query: 366 PAVT 369 VT Sbjct: 332 DKVT 335
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1098 bits (2841), Expect = 0.0 Identities = 429/1042 (41%), Positives = 651/1042 (62%), Gaps = 18/1042 (1%) Query: 3 ISKFFIDRPIFAGVLSVLILLAGLLSVFQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 ++ FFI RPIFA VL++++++AG L++ QLP+++YP + PP+V V A YPGA+ + + +T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQAMPRLPE 122 V +E+++NG+++++YM S ++S G++TIT+ F+ G DPD AQ VQN++ A P LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVGEVGLFGS 182 +VQ+ G++ KSS + MV S + + +Y NVKD L+RL GVG+V LFG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 183 GDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNS--PLQLSVNAQGR 240 YAMR+WLD + + LT +++N ++ QN Q+AAG +G +P+ L S+ AQ R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 LTTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRSLLDNKQAVAIPIFQAPGANA 300 +EF + L+ DG+V RL DVARVEL Y + + ++ K A + I A GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 301 LQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKAVVHTLLEAIALVVVVVILFL 360 L + +++ + EL FP +K YD T FV+ SI VV TL EAI LV +V+ LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 361 QTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVER- 419 Q RA++IP +AVPV ++GTFA++ AFGYSIN L++FGMVLAIG++VDDAIVVVENVER Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 420 NIEAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479 +E L P+EAT ++M ++ G ++ IA+ L AVF+P+AF G TG Y+QF++TI + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 480 ISAFNSLTLSPALAALLLKGHDAKPDALTRIMNRVFGRFFALFNRVFSRASDRYSQGVSR 539 +S +L L+PAL A LLK ++ + G FF FN F + + Y+ V + Sbjct: 480 LSVLVALILTPALCATLLKP-------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 540 VISHKASAMGVYAALLGLTVGISYIVPGGFVPAQDKQYLISFAQLPNGASLDRTEAVIRK 599 ++ + +YA ++ V + +P F+P +D+ ++ QLP GA+ +RT+ V+ + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 600 MSDTALK--QPGVESAVAFPGLSINGFTNSSSAGIVFVTLKPFDERKAKDLSANAIAGAL 657 ++D LK + VES G S +G + +AG+ FV+LKP++ER + SA A+ Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 658 NQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFM-KAAQSAP 716 + I+D ++ F P ++ LGT GF +L D+ LG+ AL A + AAQ Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 717 ELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFGRVYQV 776 L + + + Q +++D+ KA+ GV+++D+ T+ LG YVNDF GRV ++ Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 777 RAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSADINGGP 836 QADA FR PED+ +L R++ G+MVP S+ YG + RYNG S +I G Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 837 APGYSSSQAEAAVERIAAQTLPRGIKFEWTDLTYQKILAGNAGLWVFPISVLLVFLVLAA 896 APG SS A A +E +A++ LP GI ++WT ++YQ+ L+GN + IS ++VFL LAA Sbjct: 831 APGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 897 QYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAILIVEFAR 956 YES ++P++V+L+VP+GI+ L L N+++ +GL+ +GL+ KNAILIVEFA+ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 957 EL-EMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFG 1015 +L E +G +A + A R+RLRPILMTS+AFI+GV+PL S GAGS ++A+G+ V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1016 MIGVTFFGLFLTPAFYVLIRSL 1037 M+ T +F P F+V+IR Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031 Score = 83.3 bits (206), Expect = 3e-18 Identities = 86/461 (18%), Positives = 169/461 (36%), Gaps = 40/461 (8%) Query: 610 VESAVAFP-GLSINGFTN-------SSSAGIVFVTLKPFDERKAKDLSANAIAGALNQKY 661 V+ V ++NG N S SAG V +TL F D++ + L Sbjct: 57 VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLT-FQSGTDPDIAQVQVQNKLQLAT 115 Query: 662 SAIQDAYIAVFPPPPVMGLGTMGGFKLQLE---DRGALGYSALNDAAQNFMKAAQSAPEL 718 + + + + + D ++D + +K L Sbjct: 116 PLLPQE----VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK-----DTL 166 Query: 719 GPMFSSYQINV----PQLNVDLDRVKAKQQGVAVTDVFNTM-----QIYLGSQYVNDFNR 769 + + + + + LD + + DV N + QI G Q Sbjct: 167 SRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAG-QLGGTPAL 225 Query: 770 FGRVYQVRAQADAPFRANPEDILQLKTR-NSAGQMVPLSSLVNVTQTYGP-EMVVRYNGY 827 G+ A F NPE+ ++ R NS G +V L + V ++ R NG Sbjct: 226 PGQQLNASIIAQTRF-KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK 284 Query: 828 TSADINGGPAPGYSSSQ-AEAAVERIA--AQTLPRGIKFEWT-DLTYQKILAGNAGLWVF 883 +A + A G ++ A+A ++A P+G+K + D T L+ + + Sbjct: 285 PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL 344 Query: 884 PISVLLVFLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGL 943 +++LVFLV+ +++ L + VP+ +L + N T G+++ +GL Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 944 ACKNAILIVE-FARELEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGS 1002 +AI++VE R + +A ++ ++ ++ +P+ G+ Sbjct: 405 LVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 1003 EMRHAMGVAVFFGMIGVTFFGLFLTPAF-YVLIRSLNSKHK 1042 + + + M L LTPA L++ ++++H Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHH 505
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.4 bits (123), Expect = 3e-09 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 14/139 (10%) Query: 44 ATVDVASVVSKTITDWQEYSGRLEAIDQVDIRPQVSGKLIAVHFKDGSLVKKGDLLFTID 103 V++ + + +T +SGR + I +P + + + K+G V+KGD+L + Sbjct: 78 GQVEIVATANGKLT----HSGRSKEI-----KPIENSIVKEIIVKEGESVRKGDVLLKLT 128 Query: 104 PRPFEAELNRAKAQLASAEAQVTYTASNLSRIQRLIQSNAVSRQE----LDLAENDARSA 159 EA+ + ++ L A + LSR L + + + +++E + Sbjct: 129 ALGAEADTLKTQSSLLQARLEQ-TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 160 NANLQAARAAVQSARLNLE 178 + ++ + Q+ + E Sbjct: 188 TSLIKEQFSTWQNQKYQKE 206 Score = 49.4 bits (118), Expect = 1e-08 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 12/105 (11%) Query: 110 ELNRAKAQLASAEAQVTYTASNLSRIQRLIQSNAVSRQELDLAENDARS--------ANA 161 + + + A ++ S L +I+ I S +++E L ++ Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILS---AKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 162 NLQAARAAVQSARLNLEYTRITAPVSGRISRAEV-TVGNVVSAGN 205 N+ + + + I APVS ++ + +V T G VV+ Sbjct: 310 NIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.012 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 11/67 (16%) Query: 1 MKKILFTTLTGLVLLTSSAAFARTDPALLNQAAKNVVTVSKAKTLADETGVTLTGTIVKH 60 MKK F L L + +A ++ + NVV ++ I K+ Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVAT-----------NSIIADITKN 49 Query: 61 IAGDHYE 67 IAGD Sbjct: 50 IAGDKIN 56
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.4 bits (146), Expect = 2e-13 Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 17 TTLKGQERIKQILRNAEIVFLTKGYSGFSMRGVATQSNISLSTLQHYFQNKDILLKALLN 76 T + QE + IL A +F +G S S+ +A + ++ + +F++K L + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 77 KLICDYIQRIEIL 89 + + Sbjct: 65 LSESNIGELELEY 77
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 390 bits (1003), Expect = e-124 Identities = 139/755 (18%), Positives = 267/755 (35%), Gaps = 79/755 (10%) Query: 120 LDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPEVAQSGI-GLLNNYDF--YT 176 + D + + Q L P A+M + G + PE+ GI L NY+F + Sbjct: 139 TSMIHDATAQLDVGQQRLNLTIPQAFMSNRARG---YIPPELWDPGINAGLLNYNFSGNS 195 Query: 177 YRPYQGGSTSSLFTEQRFFSPLGV--IKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQ 234 + GG++ + + +G ++++ + N ++ S + ++ +T + Sbjct: 196 VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNS----SDSSSGSKNKWQHINTWLE 251 Query: 235 FDNQKNATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPS 294 D + LGD T + + G Q+ + + PD P G A + Sbjct: 252 RDIIPLRSRLTLGDGYTQG-DIF-DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTA 309 Query: 295 TVDLIINGQKTSSTEVQSGPFILNNVPFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLL 354 V + NG ++ V GPF +N++ G+ V +A G +VP+ L Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369 Query: 355 KPGLFDYSLSLGKIREDYGLKNFSYGKFASAADARYGVNDWLTVEGRTELSSDLQLLGAG 414 + G YS++ G+ R + + +G+ T+ G T+L+ + G Sbjct: 370 REGHTRYSITAGEYRSGNAQQ---EKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFG 426 Query: 415 SVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSIN------- 467 + LG LS TQ+ + +G Y+ + N G +I Sbjct: 427 IGKNMGALGALSVDMTQANSTL----PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYS 482 Query: 468 -------HNQRDDEYTDLSRLQYSNLISVNSNKSLTANTYFATKNS---------GTFGV 511 + + +I V + N + + G Sbjct: 483 TSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTST 542 Query: 512 GYINTKANDFKN-----RFLNLSWAPVLPTYMNGVTVSLSA--NRDFIEKEWSAAFQL-- 562 Y++ + T + +LS ++ +K L Sbjct: 543 LYLSGSHQTYWGTSNVDEQFQAGLN----TAFEDINWTLSYSLTKNAWQKGRDQMLALNV 598 Query: 563 SIPL----------FQRNATVNSGYAFNKQGDTGY-VNFNRSVPSEGGFGVDL----TRR 607 +IP R+A+ + + + G ++ + + Sbjct: 599 NIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGG 658 Query: 608 FNENSEDLNQARVNYRNSYINTDFGLSGNHDY-NYWFGLSGSLIYMAGDLFASNRLGESF 666 + NS A +NYR Y N + G S + D ++G+SG ++ A + L ++ Sbjct: 659 GDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTV 718 Query: 667 ALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFTITQVEQ 726 L+ D + EN R++ +G+ +P T Y + ++D L N + Sbjct: 719 VLVKAPGAKD--AKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVA 776 Query: 727 RIAAKRGSGVVIKFPVHQSISANVYLTQADGKPVPVGAVV-HRADQESSYVGMDGIVYLE 785 + RG+ V +F I + LT + KP+P GA+V + Q S V +G VYL Sbjct: 777 NVVPTRGAIVRAEFKARVGIKLLMTLTH-NNKPLPFGAMVTSESSQSSGIVADNGQVYLS 835 Query: 786 NLKPNNTVTVQ--RSDQSICKADFSVDVEQAKQQI 818 + V V+ + + C A++ + E +Q + Sbjct: 836 GMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLL 870
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.4 bits (123), Expect = 4e-09 Identities = 51/289 (17%), Positives = 101/289 (34%), Gaps = 44/289 (15%) Query: 77 FIFRPLGGLFFGHLGDKYGRQKVLAITVIIMSISTFGIGLIPSYETIGLWAPILLLIVKI 136 F P+ G L D++GR+ VL +++ ++ + P LW +L I +I Sbjct: 57 FACAPVLG----ALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-----LW---VLYIGRI 104 Query: 137 VQGFSIGGEYSGAAIFVAEYSPDRKR----GFMGSWLDFGSIAGFVLGAATVALITHAVG 192 V G + G + A ++A+ + +R GFM + FG +AG VLG Sbjct: 105 VAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---------- 153 Query: 193 ETRFAEWGWRIPFFLALPLGIIGLYLRNRLEETPVYQQHSEQQAQKSKPQKFSFKEIFVK 252 + PFF A L + L + + + P + Sbjct: 154 ---MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 253 HKRSLLVC---IGLVISTNVTYYMLLTYLPSYFSHNLGYSEAHGALIIIAVMVGMLFVQP 309 +L+ + LV +++ + + + A + Q Sbjct: 211 VVAALMAVFFIMQLVGQVPAALWVIFG------EDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 310 VI-GYLSDKFGRRPFIFIGSFSLIFLSYPAFVLLNSGVNYQIFIGLLIL 357 +I G ++ + G R + +G + ++LL + +++L Sbjct: 265 MITGPVAARLGERRALMLG----MIADGTGYILLAFATRGWMAFPIMVL 309 Score = 41.0 bits (96), Expect = 8e-06 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 12/126 (9%) Query: 261 IGLVISTNVTYYMLLTYLPSYFSHNLGYSEAHGALIIIAVMVGMLFVQPVIGYLSDKFGR 320 IGL++ V +L + S AH +++ + PV+G LSD+FGR Sbjct: 21 IGLIMP--VLPGLLRDLVHS------NDVTAHYGILLALYALMQFACAPVLGALSDRFGR 72 Query: 321 RPFIFIGSFSLIFLSYPAFVLLNSGVNYQIFIGLLILALSLNMSIGVMASTLPALFPTEI 380 RP + + SL + ++ + + ++IG ++ ++ + V + + + + Sbjct: 73 RPVLLV---SLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDE 128 Query: 381 RYSALG 386 R G Sbjct: 129 RARHFG 134
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.0 bits (135), Expect = 9e-11 Identities = 70/391 (17%), Positives = 136/391 (34%), Gaps = 32/391 (8%) Query: 15 SLFLAIFSLAVGGFCIGTTEFVAMGLIQEIAHNLKITVPEAGHFISAYALGVVIGAPIIA 74 L + + ++A+ IG V GL++++ H+ + G ++ YAL AP++ Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDV-TAHYGILLALYALMQFACAPVLG 64 Query: 75 ILGAKVPRKTLLLCLMLFYGIANACTALAHTPETVLVSRFIAGLPHGAYFGVGALVAAEL 134 L + R+ +LL + + A A A + + R +AG+ GA V A++ Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADI 123 Query: 135 AGPSRRASAVAQMMMGLTVATVIGVPLATWLGQHFGWRAGFEFSATIAFFTLIAVACFVP 194 RA M V G L +G F A F +A + + +P Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 195 NIPVQATAS-----IKTELAGLKNINMWLTLAVGAIGFGGMFSVYSYVSPILTEYT--KV 247 + LA + +A F M V + + + + Sbjct: 183 E-SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 248 NIQIVPIALALWGIGMVIGGLAAGWLADKNL-----NKTIVGVLISSAIAFVVASFLMSN 302 + I ++L G ++ LA + + ++ +I+ +++ +F Sbjct: 242 HWDATTIGISLAAFG-ILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATR- 299 Query: 303 SYSAIGSLFLIGLTVMGLGG----ALQTRL-MDVAGDAQTLAASLNHSAFNLANALGAFL 357 G + + ++ GG ALQ L V + Q + +L + +G L Sbjct: 300 -----GWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLL 354 Query: 358 GGWVLSHQMGWIAPIWVGFVLSLGGLIILLI 388 + + W G+ G + LL Sbjct: 355 FTAIYAAS----ITTWNGWAWIAGAALYLLC 381
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 55.0 bits (132), Expect = 2e-12 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%) Query: 43 ENKESVFFIHIKDEKITGFVLLYLGFSSVACSTYYILDDVYVTPLFRRQGSAKQLIDTAI 102 E + F++ + G + + + Y +++D+ V +R++G L+ AI Sbjct: 61 EEEGKAAFLYYLENNCIGRIKI-----RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAI 115 Query: 103 LFAKQENALRISLETQSNNHESHRLYEKMGFI 134 +AK+ + + LETQ N + Y K FI Sbjct: 116 EWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>cloacin#Cloacin signature. Length = 551 Score = 37.0 bits (85), Expect = 2e-05 Identities = 22/73 (30%), Positives = 26/73 (35%) Query: 76 GAQGAGFPAQGGSQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGGFGGQG 135 G G GG G G G G + G+G+ + G G G GG G G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGG 67 Query: 136 GFGGQGGFGGQGG 148 GG G G Sbjct: 68 NGNSGGGSGTGGN 80 Score = 28.9 bits (64), Expect = 0.012 Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 88 SQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGG-FGGQGGFGGQGGFGGQ 146 S G G G G GG G G GG G+ + +GG G G G G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 147 GGFGGHQGGFDNDS 160 G GG G S Sbjct: 62 HGNGGGNGNSGGGS 75
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 287 bits (736), Expect = 2e-86 Identities = 151/800 (18%), Positives = 274/800 (34%), Gaps = 78/800 (9%) Query: 62 LNISINSNP--SED--LVAVRQDQDKKLYIRARDLKTLRLKMDDSISDSQW------ICL 111 ++I +N+ + D +Q + L ++ L + Sbjct: 80 VDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLT 139 Query: 112 NELKDIRFKYLENEQSLNLQVPPHMMTGYSVDLKGQQITSPQLLKIKPLNAAILNYSLY- 170 + + D + +Q LNL +P M+ + P L +NA +LNY+ Sbjct: 140 SMIHDATAQLDVGQQRLNLTIPQAFMS------NRARGYIPPELWDPGINAGLLNYNFSG 193 Query: 171 HTITNDENVFSGSAEGIFNSAIGNFSSGVL-------YNGNDENSYSHEKWVRLESKWQY 223 +++ N S A S + N + L YN +D +S S KW + + + Sbjct: 194 NSVQNRIGGNSHYAYLNLQSGL-NIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLER 252 Query: 224 VDPEKIRIYTLGDFISNSSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTL 283 TLGD + + + G Q +S D P G A + + Sbjct: 253 DIIPLRSRLTLGDGYTQGDIF-DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQV 311 Query: 284 DLYVNQQKIYSGLVPSGPFDIKQLPFISG-NEVTLVTTDATGRQSITKKPYYFSSKILAK 342 + N IY+ VP GPF I + ++ + +A G I PY + + Sbjct: 312 TIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQRE 371 Query: 343 GINEFSVDVGVPRYNYGLYSNDYDDATFASGAIRYGYSNSLTLSGGVEASTDGLSNIGTG 402 G +S+ G R F + +G T+ GG + + D G Sbjct: 372 GHTRYSITAGEYRSGNAQQEKPR----FFQSTLLHGLPAGWTIYGGTQLA-DRYRAFNFG 426 Query: 403 FAKNLFGIGVINADIAASQYKDENGYSALLGLEGRISKNISFN--------TSYRKIFDN 454 KN+ +G ++ D+ + + S G R N S N YR Sbjct: 427 IGKNMGALGALSVDMTQANSTLPDD-SQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSG 485 Query: 455 YFDLARVSQVRY------LKDNQSDAESQNYLNYSALADEIFRAGINYNFYAG-YGA-YL 506 YF+ A + R +D + + Y+ ++ + + G YL Sbjct: 486 YFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYL 545 Query: 507 GYNQIKY-----SDNQYKLLSANLSGSLNK-NWGFYTSAYKD-YENHKDYGIYFAL---- 555 + Y D Q+ A L+ + NW S K+ ++ +D + + Sbjct: 546 SGSHQTYWGTSNVDEQF---QAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPF 602 Query: 556 -------RYTPSNKFNAITSVSSDS-GRLSYRQEIFGLSDPQIGSFGWG---GYVERDQD 604 + +A S+S D GR++ ++G + + + + GY Sbjct: 603 SHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYG-TLLEDNNLSYSVQTGYAGGGDG 661 Query: 605 NHDNNASIYASYRARAAYLAGRYNRIGDNDQVALSATGSLVAAAGRLFAANEIGDGYAVV 664 N + +YR Y+ D Q+ +G ++A A + + D +V Sbjct: 662 NSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLV 721 Query: 665 TNAGPQSQILNGGVNLGFTDKSGRFLIPSLMPYQENHIYLDPSFLPLNWSVNSTEQKTVV 724 G + + TD G ++P Y+EN + LD + L N +++ V Sbjct: 722 KAPGAKDAKVENQ-TGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780 Query: 725 GYRQGTMIDFGAHQVISGLVKLVDKNNSPLLPGYSVQ-INGQQDGVVGYDGEVFIPNLLK 783 +F A I L+ + NN PL G V + Q G+V +G+V++ + Sbjct: 781 TRGAIVRAEFKARVGIKLLM-TLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPL 839 Query: 784 QNKLVVDLLDHGSCQVDFTY 803 K+ V + + Y Sbjct: 840 AGKVQVKWGEEENAHCVANY 859
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 31.2 bits (70), Expect = 0.003 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%) Query: 64 STRIARYLDETFPDTPRLYPEDANQKALAELWEDW 98 S+ +A Y D + + P + E+ K L LW W Sbjct: 67 SSLLAVYSDHIYRNQPMMIREN---KPLISLWAQW 98
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 52.4 bits (125), Expect = 3e-10 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 10/163 (6%) Query: 18 VGASQGIGAAVCHRFAKEGLKVYVAGRTFQKIEAVAAEIHANVGEAVAFRLDAEDINQVQ 77 GA+QGIG AV A +G + +K+E V + + A A AF D D + Sbjct: 14 TGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAID 73 Query: 78 ALFDTIISQNERITAVIHNVGGNIPSIFLRSPL-SFFTQMWQSTF----LSAYLVAQSCL 132 + I + I ++ N+ + + S + W++TF + ++S Sbjct: 74 EITARIEREMGPIDILV-----NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 133 KIFKEQNHGTLIFTGASASLRGKPFFAAFTMGKSALRTYALNL 175 K ++ G+++ G++ + + AA+ K+A + L Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.4 bits (120), Expect = 3e-10 Identities = 15/65 (23%), Positives = 23/65 (35%) Query: 5 EASFRALRMLHTARDLFKQYGFHKVGVDRIIAESKITKATFYNYFHSKERLIEMCLTFQK 64 EA +L A LF Q G + I + +T+ Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 DGLKE 69 + E Sbjct: 68 SNIGE 72
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 4e-06 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 17/87 (19%) Query: 52 VAVEDNTIVGHVAISPVQISSGEKNWYGLG---PISVAPNKQGQGIGSLLMNSSLEKLKK 108 + +N +G + I NW G I+VA + + +G+G+ L++ ++E K+ Sbjct: 69 LYYLENNCIGRIKIR--------SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKE 120 Query: 109 LGAKGCVL------LGDPKYYSRFGFK 129 G +L + +Y++ F Sbjct: 121 NHFCGLMLETQDINISACHFYAKHHFI 147
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 29.9 bits (67), Expect = 0.014 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 27/158 (17%) Query: 205 PAIEAQYQFGKSGVNKFRPYLGVGLMYAHFNDIKLNDEIRSDLISA---------GHMIQ 255 P E Q G G + PY+G + Y + + + A G+ I Sbjct: 50 PTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPIT 109 Query: 256 NVLD--GKAGAALDRKESSGNMVVKVDADDAIAPIFTAGFTYDFNDSWYTVASISYAKLN 313 + LD + G + R ++ N V + D ++P+F G Y T Y N Sbjct: 110 DDLDIYTRLGGMVWRADTKSN-VYGKNHDTGVSPVFAGGVEYAITPEIATRL--EYQWTN 166 Query: 314 NRTQIDVINQNTGARLIHGSTKVDIDPIITYLGVGYRF 351 N I ++ LGV YRF Sbjct: 167 NIGDAHTIGTRPDNGMLS-------------LGVSYRF 191
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 202 bits (515), Expect = 3e-64 Identities = 80/284 (28%), Positives = 125/284 (44%), Gaps = 24/284 (8%) Query: 116 TTQSNPDWGLDRIDQKALPLNSTYSYLQTGSGTTAYIVDTGILSSHQEFSGRVLSGYTAI 175 + G++ I A+ + G G ++DTG + H + R++ G Sbjct: 17 QQVNEIPRGVEMIQAPAVWNQTR------GRGVKVAVLDTGCDADHPDLKARIIGGRNFT 70 Query: 176 SDGNG----TTDCNGHGTHVAGTVGGT-----TYGVAKNVNLVPIRILGCDGSGASSNVI 226 D G D NGHGTHVAGT+ T GVA +L+ I++L GSG +I Sbjct: 71 DDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWII 130 Query: 227 AGLDWILKNGKKPAVVNMSLGGATSSS-LDSAVENLYNNGYVMVVAAGNSNTDA----CT 281 G+ + ++ +++MSLGG L AV+ + +++ AAGN Sbjct: 131 QGIYYAIEQKVD--IISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDEL 188 Query: 282 SSPARVSKAITVAATDNTDTRASYSNYGSCVDIFAPGSQINSSWIGSNTATKILNGTSMA 341 P ++ I+V A + + +SN + VD+ APG I S+ G AT +GTSMA Sbjct: 189 GYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYAT--FSGTSMA 246 Query: 342 TPHVAGVVAEMLQSTPTASPQTISTNLLNQASSNVVKNPSGSPN 385 TPHVAG +A + Q + + ++ L SP Sbjct: 247 TPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPK 290
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.025 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 221 AEFMQKAINNSQLAKLE-ASHLSNIEQPQRFTQELTRFIQ 259 Q+ + + ++ SH + E P + + R Q Sbjct: 139 LTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQ 178
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.6 bits (108), Expect = 3e-07 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 5/179 (2%) Query: 33 IICFLIIFTDGIDTAAMGFIAPALAQDWGVDRSQ---LGPVMSAALGGMIIGALVSGPTA 89 I+ + D + + + P L +D G +++ A V G + Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 90 DRFGRKIVLAFSMLVFGGFTLASAYATNLDSLVVLRFLTGIGLGAAMPNATTLFSEYCPT 149 DRFGR+ VL S+ A A L L + R + GI GA A ++ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDG 126 Query: 150 RIRSLLVTCMFCGYNLGMATGGFISSWLIPTYGWHSLFLLGGWSPLILMVLVILVLPES 208 R+ M + GM G + + + H+ F + + +LPES Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Score = 29.0 bits (65), Expect = 0.041 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 11/132 (8%) Query: 289 LPTLMRETGASMERAAFIG---GLFQFGGVVSALFIGWAMDKFNPNRVIAIFYFAAGLFA 345 LP L+R+ S + A G L+ A +G D+F V+ + L Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLV-----SLAG 82 Query: 346 IAVGQSL-GNSTLLAVLVLCAGIA-INGAQSSMP-ALSARFYPTQCRATGVSWMTGIGRF 402 AV ++ + L VL + +A I GA ++ A A RA +M+ F Sbjct: 83 AAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 403 GAVFGAWIGAVL 414 G V G +G ++ Sbjct: 143 GMVAGPVLGGLM 154
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 2e-11 Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 5 KTSSKKLQVIHTAIRLFVTYGFHTTGVDLIIKEAKITKATFYNYFHSKERLIEMCIAFQK 64 + + ++ A+RLF G +T + I K A +T+ Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 SLLKE 69 S + E Sbjct: 68 SNIGE 72
>PF05860#haemagglutination activity domain. Length = 117 Score = 65.6 bits (160), Expect = 1e-14 Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 29/144 (20%) Query: 74 AGIVADSAANAANRAVIGAGKNSAGTVVPVVNIQTPK-NGISHNIYKQFDVLAEGAVLNN 132 A I D+ + ++ T + + H+ +++F V G N Sbjct: 1 AQITPDTTLPINSNITTEGNT-------RIIERGTQAGSNLFHS-FQEFSVPTSGTAFFN 52 Query: 133 SRQGATTKTVGNVAANPFLATGEARVILNEVNSSAASRFEGNLEVAGQMADVIIANPSGI 192 + + I++ V + S +G + A++ + NP+GI Sbjct: 53 N-------------------PTNIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGI 92 Query: 193 SIKGGGFINANKAIFTTGKPQLNA 216 ++ + + +L Sbjct: 93 IFGQNARLDIGGSFVGSTANRLKF 116
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.7 bits (77), Expect = 0.001 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 275 LWMPQILKAFH-LTAMQTGLLNMIPFGLAAAFM-IVWGVHADKSGN-KSLNTAIPLFVTS 331 +P ++K H L+ + G + + P ++ + G+ D+ G LN + S Sbjct: 277 SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336 Query: 332 FGLLLTIFTSSLTLSLLLFSLVLMGNYAIKGPFWALVSERLPPTLVAVGIAAVNTIAHIG 391 F + ++ ++ VL G K +VS L G++ +N + + Sbjct: 337 FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLS 396 Query: 392 TGLMNSIMG 400 G +I+G Sbjct: 397 EGTGIAIVG 405
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.3 bits (60), Expect = 0.008 Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 51 YFRGQSWPEMVREDRSQSDARS 72 Y R Q WP ++ ED+ A + Sbjct: 845 YMRPQVWPPVIAEDKEADQAHA 866
>PF07269#Transport secretion system IV, VirB7 protein Length = 55 Score = 29.6 bits (66), Expect = 0.001 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 1 MKRCLLVLLLGLGLAACNDNDHDDQVSTEKPALAPSLDVGTYIISTETDQELPMAGKYYS 60 MK CLL L + L C N D+ ++ K + P L+VG + +D MA + Sbjct: 1 MKYCLLCLA--IVLTGCQTN---DKPASCKGPIFP-LNVGRW-QPAPSDLHPGMADGQHE 53 Query: 61 G 61 Sbjct: 54 R 54
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 2e-09 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Query: 7 PTRALKVVNTSIELFHRRGFHIAGVDRLVKESEITKATFYNYFHSKERLIEICLMVQKER 66 TR +++ ++ LF ++G + + K + +T+ Y +F K L + + Sbjct: 11 ETRQ-HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 LQEKVVAMVEYDHDTNA 83 + E + Sbjct: 70 IGELELEYQAKFPGDPL 86
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.6 bits (100), Expect = 1e-07 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 21/152 (13%) Query: 33 IGFLAPIEKNEVVNYWREVNSK---------------LANGNNRLWIAIQQGTIIGSVQL 77 G + P +N V Y E SK + ++ + IG +++ Sbjct: 23 FGRMIPAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKI 82 Query: 78 SLVSKKNGVHRAEVEKLMVLTTARKQGIATLLMNELENFAREKSLRLLVLDTREGDVSEL 137 N A +E + V RK+G+ T L+++ +A+E L+L+T++ ++S Sbjct: 83 R----SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISAC 138 Query: 138 -LYSKIGFVRVGVIPSFALSSNGSYDGTAIYY 168 Y+K F +G + + S+ + + AI++ Sbjct: 139 HFYAKHHF-IIGAVDTMLYSNFPTANEIAIFW 169
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 760 bits (1965), Expect = 0.0 Identities = 257/852 (30%), Positives = 407/852 (47%), Gaps = 47/852 (5%) Query: 37 EAAASAPVEAEFDSAFLIGDAQ-KVDISRFKYGNPVLPGEYNVDVYVNGQWFGKRRMIFK 95 A + E F+ FL D Q D+SRF+ G + PG Y VD+Y+N + R + F Sbjct: 38 AQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFN 97 Query: 96 ALDPNQNAVTCFTGMNLLEYGVKQEILTKHAPLQKENNSCYKIEEWVENAFYEFDTSRLR 155 D Q V C T L G+ ++ L +++C + + +A + D + R Sbjct: 98 TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLA--DDACVPLTSMIHDATAQLDVGQQR 155 Query: 156 VDISIPQVALQKNAQGYVDPSVWDRGINAGFLSYSGSAYKTFNQSGDRSETTNAFMGVTA 215 ++++IPQ + A+GY+ P +WD GINAG L+Y+ S N+ G S A++ + + Sbjct: 156 LNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNS--HYAYLNLQS 213 Query: 216 GLNLAGWQLRHNGQWQWQDTPAENQSKSDYQETSTYLQRAFPKYRGVLTLGDSFTNGEVF 275 GLN+ W+LR N W + + + + SK+ +Q +T+L+R R LTLGD +T G++F Sbjct: 214 GLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIF 273 Query: 276 DSYGYRGIDFSSDDRMLPNSMLGYAPRIRGNAKTNAKVEVRQQGQLIYQTTVAPGNFEIN 335 D +RG +SDD MLP+S G+AP I G A+ A+V ++Q G IY +TV PG F IN Sbjct: 274 DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTIN 333 Query: 336 DLYPTGFGGEIEVSVIEANGEIQKFSVPYASVVQMLRPGMNRYSLTVGQFRDQDIDLD-P 394 D+Y G G+++V++ EA+G Q F+VPY+SV + R G RYS+T G++R + + P Sbjct: 334 DIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKP 393 Query: 395 WIIQGKYQQGINNYLTGYTGIQASENYAAILLGAAVAT-PIGAIAFDVTHSEAEFEKQAS 453 Q G+ T Y G Q ++ Y A G +GA++ D+T + + + Sbjct: 394 RFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQ 453 Query: 454 QSGQSFRLSYSKLITPTNTNLTLAAYRYSTENFYKLRDALLIRDLEEKGVNTYAAG---- 509 GQS R Y+K + + TN+ L YRYST ++ D R Sbjct: 454 HDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKP 513 Query: 510 ----------RQRSEFQITLNQGLPEGWGNFYVVGSWVDYWNRSESTKQYQIGYSNNYHG 559 +R + Q+T+ Q L Y+ GS YW S +Q+Q G + + Sbjct: 514 KFTDYYNLAYNKRGKLQLTVTQQLGR-TSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFED 572 Query: 560 LTYGLSAINRKVEYGSNDASHDTEYLMTLSFPINFKKN----------SVNVNVTASEDS 609 + + LS K + D + ++ P + S + +++ + Sbjct: 573 INWTLSYSLTK---NAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNG 629 Query: 610 RT---VGASGMVG--DRFSYGASVSHQD----YANPTFNANGRYRTNYATVGGSYSIADS 660 R G G + + SY + + T A YR Y YS +D Sbjct: 630 RMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDD 689 Query: 661 YQQAMVSLSGSVVAHSDGILFGPEQGQTMVLVHAPDAAGAKVNNTVGLSVNKAGYAVVPY 720 +Q +SG V+AH++G+ G T+VLV AP A AKV N G+ + GYAV+PY Sbjct: 690 IKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPY 749 Query: 721 VTPYRLNDITLDPQEMSSEVELEETSQRIAPFAGAIAKVDFATKTGYAVYINSKTADGNS 780 T YR N + LD ++ V+L+ + P GAI + +F + G + + T + Sbjct: 750 ATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTL-THNNKP 808 Query: 781 LPFAAQVFNQKDEAVGIVAQGSMIYLRTPLAQDRLYVKWGDESNERCSVEYNISNELRNK 840 LPF A V ++ ++ GIVA +YL ++ VKWG+E N C Y + E ++ Sbjct: 809 LPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPE--SQ 866 Query: 841 QQSIVMTEAVCK 852 QQ + A C+ Sbjct: 867 QQLLTQLSAECR 878
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.6 bits (105), Expect = 5e-08 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 5/153 (3%) Query: 5 STKTNQIDNKNRLIIQTVGDLFLEYGYSRVSINLIISKIGGSKRDLYAQFGDKEGLFRSV 64 TK + + I+ LF + G S S+ I G ++ +Y F DK LF + Sbjct: 4 KTKQEAQETRQH-ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 65 IADVCQQVLDPLKALPVE--GGSIEQALTSFGRIFLSVLLSSRVIALQKLVLSEATRYPE 122 + + + G + + S + R L +++ + E Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 123 FAKT--FVQLGPVSAYNLAAELLMKRAEVGEIR 153 A + + +Y+ + L E + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLP 155
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 121 bits (305), Expect = 7e-40 Identities = 49/88 (55%), Positives = 68/88 (77%) Query: 2 NKSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTGR 61 NK +LI +AE ++K D+ A+DA ++++ L KG+ V L+GFG F V+ERAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGEELQIKATKVPSFKAGKGLKDSV 89 NP+TGEE++IKA+KVP+FKAGK LKD+V Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 70.0 bits (171), Expect = 1e-16 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 9/182 (4%) Query: 41 IQKPAEKPVELQIIQDIKPPPPPKPEEPKPKEKPPEPPKMVEKVAKVPEPPKEVEKVATP 100 + PA+ + +P P+PE E P E P ++EK P+P + K Sbjct: 54 MVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQ 113 Query: 101 VQKTTPVAQPTKVATPAPAAPSTPSPSPVAAPAPVAAAAPAPKPAGVTRGVSEGSAGCEK 160 ++ + + AP+ P+ S A + A P ++R + Sbjct: 114 PKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN---------Q 164 Query: 161 PEYPREALMNEEQGTVRIRVLVDTSGKVIDAKVKKSSGSKILDKAATKAYSLCTFKPAMK 220 P+YP A +G V+++ V G+V + ++ + + + ++ A ++P Sbjct: 165 PQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKP 224 Query: 221 DG 222 Sbjct: 225 GS 226
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.6 bits (59), Expect = 0.027 Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 4 ILIALLIIVFGYSLALVLQNPTELPVDLLFTQVPAMRLGLLLLLTLALGIVVGLLLGVQV 63 + L +++ + ++++ + L + + L +L + I + + + Sbjct: 141 LKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISI 200 Query: 64 FRV-FQKSWEIKRLRKDIDHLRKEQIQS 90 F+ IK L+ D +++E + Sbjct: 201 ADYAFEYYQYIKELKMSKDEIKREYKEM 228
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 106 bits (267), Expect = 5e-34 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVG 66 NK DLI ++A L + AV + + L+ ++++ GFG+F + R R G Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 67 RNPKTGKSVDVAAKAVPHFKPGKALRDAV 95 RNP+TG+ + + A VP FK GKAL+DAV Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.034 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%) Query: 5 IITIDGPSGSGKGTLAAKLAAYYQF--HLLDSGA 36 + ++G G GK TL L F D G Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 29.1 bits (65), Expect = 0.008 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 24 RLTRASGFTLVELLVAIAIFAVLSLL 49 + GFTL+E++V I I VL+ L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASL 28
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 37.6 bits (87), Expect = 3e-06 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 1 MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVA 54 M+ +GFTLLE+M+ L + V+A V + + S ++ +T A+F A Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGM---VLLAFPASRDDSAAQTLARFEAQLRFV 51
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.008 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 14/216 (6%) Query: 39 NSVILKSDLEQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQAQLEQVKKYGIKPDE 98 +++ +S L Q E Q + + + + ++ D+ + E+V + E Sbjct: 135 DTLKTQSSLLQARLEQT-RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193 Query: 99 KSLNEAVLKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINR-LRQQQVMSRI 157 + K + A + + A YENL L L +Q +++ Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINR-YENLSRVEKSRLDDFSSLLHKQAIAKH 252 Query: 158 KISDQ-----DVDNFLKSPQGQ-AALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSN 211 + +Q + N L+ + Q + ++ Q E+ +L Q+ Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ----LVTQLFKNEILDKLRQTT 308 Query: 212 DLNALKKLSTATVKVEGADMGFR-PLSDIPAELAAR 246 D L L A + R P+S +L Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.9 bits (142), Expect = 4e-13 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%) Query: 1 MSKKDDIITTALRLFNSYSYNSIGVDRIISESGVAKMTFYKYFPSKEKLIEECLLLRNSL 60 + I+ ALRLF+ +S + I +GV + Y +F K L E L S Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 LQNSLTAAISKEDETNPLARIKAIFLWYSDWFNSED----FNGCMFQKALEE 108 + L + +PL+ ++ I + + +E+ +F K Sbjct: 70 IG-ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 724 bits (1870), Expect = 0.0 Identities = 244/840 (29%), Positives = 392/840 (46%), Gaps = 51/840 (6%) Query: 47 FDTNFLVGNAQ-KIDIGRFKYGNPILPGEYSLDVYINGQWLGKRKFVFKSTRSNENAKTC 105 F+ FL + Q D+ RF+ G + PG Y +D+Y+N ++ R F + S + C Sbjct: 49 FNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPC 108 Query: 106 FTPDMLLEYGVKPEILHH-EVSSTFTCNDLDKWVNDAFYQFDTSRLRLDISIPQVALQKN 164 T L G+ + + + C L ++DA Q D + RL+++IPQ + Sbjct: 109 LTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNR 168 Query: 165 AQGYVDPRLWDRGINAAFFAYNASAYRIVNNNHEKNH-AFMGTNVGLNLYDWQLRHTGQW 223 A+GY+ P LWD GINA YN S + N +H A++ GLN+ W+LR W Sbjct: 169 ARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTW 228 Query: 224 KWQDHNEIQEKVSSYTSNNTYAQKAFPKLNSIVTLGDYFTNNNFFDALPYRGINISSDDR 283 + + + + NT+ ++ L S +TLGD +T + FD + +RG ++SDD Sbjct: 229 SYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDN 288 Query: 284 MLPNSMLGYAPQIRGYAKTNAKVEVRQQGNLIYQTTVTPGSFEINDLYPTGFGGELQVSI 343 MLP+S G+AP I G A+ A+V ++Q G IY +TV PG F IND+Y G G+LQV+I Sbjct: 289 MLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTI 348 Query: 344 YETNGEIQKFSIPYASVIEMLRPKMSRYSFTLGHFRDAN-INLKPWLVQGKYQRGINNYL 402 E +G Q F++PY+SV + R +RYS T G +R N KP Q G+ Sbjct: 349 KEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGW 408 Query: 403 TSYTGFQATENYQSFLIGSAFAT-PIGAISFDATQSSAEFEQKPTLKGRSYRLSYNRLFT 461 T Y G Q + Y++F G +GA+S D TQ+++ G+S R YN+ Sbjct: 409 TIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLN 468 Query: 462 PTNTNLTLATYKYSTENYLKLRDSILIRDLQQQDIDSFSVG--------------KQKSE 507 + TN+ L Y+YST Y D+ R V ++ + Sbjct: 469 ESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGK 528 Query: 508 FQITLNQGLPNQWGNFYLVGSWINYWNQPNRNQQFQFGYSNQFKDLTYSISAITHELDQE 567 Q+T+ Q L YL GS YW N ++QFQ G + F+D+ +++S Sbjct: 529 LQLTVTQQLGR-TSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSY------SL 581 Query: 568 NQNSGH---ETQYLLSLSFPLQFKKN----------TVNFNSSISEDSRTLGMSGYIG-- 612 +N+ + L+++ P + +++ S + R ++G G Sbjct: 582 TKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTL 641 Query: 613 ---NRFDYGSSISYQDQG----QTSLNINGTYRTNYTTIGASFGQSDTYQQEMINLNGSL 665 N Y Y G ++ YR Y + SD +Q ++G + Sbjct: 642 LEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGV 701 Query: 666 VAHSQGILFGPDQVQTMVLVYAPQATGARVGNTSGLSINKQGYAVIPYVTPYRLNDISLD 725 +AH+ G+ G T+VLV AP A A+V N +G+ + +GYAV+PY T YR N ++LD Sbjct: 702 LAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALD 761 Query: 726 PQGMPSTVELTETSHRIAPYAGSITKVNFSTKTGYAVFISTQTPNGGHLPFAAQVFNQNN 785 + V+L + P G+I + F + G + + T T N LPF A V ++++ Sbjct: 762 TNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLM-TLTHNNKPLPFGAMVTSESS 820 Query: 786 EIVGMVAQGSRIYLRTPLTQDHLYVKWGQSNSEECQLDYDIQSKILQEKQSIIMTEAVCK 845 + G+VA ++YL + VKWG+ + C +Y + + ++Q + A C+ Sbjct: 821 QSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPE--SQQQLLTQLSAECR 878
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 30.4 bits (68), Expect = 0.028 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%) Query: 267 QASLKTQRPTLIQALRSVREGVFNIEQSAHQEMKQYLRTLISITQIEINSGSPWGNFPKA 326 A L +P LI + + FN QSA + +K + T IEIN+ P NF A Sbjct: 56 NAELLKLKPVLITDEGKIDDKSFN--QSAFEALKAINKQ----TGIEINNVEPSSNFESA 109 Query: 327 KNFF 330 N Sbjct: 110 YNSA 113
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (280), Expect = 1e-31 Identities = 82/259 (31%), Positives = 122/259 (47%), Gaps = 17/259 (6%) Query: 41 SEKLKGKVAVISGGDSGIGRSVAVLFAREGADI-AVLYLEEDQDAEITKQLIEKEGQQCL 99 ++ ++GK+A I+G GIG +VA A +GA I AV Y E E ++ E + Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL--EKVVSSLKAEARHAE 60 Query: 100 LLKGDISDPDLAKQNIDKVLQHFGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFA 159 D+ D + ++ + G I+ILVN AGV + I S+S+E+ E TF N Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTG 119 Query: 160 MFYLTKEAIPYM--EEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQK 217 +F ++ YM SI+ S + + YAS+K A FT+ L L + Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY- 178 Query: 218 KGIRVNGVAPGPIWT----PLIPSSFDAETV-----EKFGKDTPMGRMGQPSEVAPAYLF 268 IR N V+PG T L AE V E F P+ ++ +PS++A A LF Sbjct: 179 -NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 269 LASDDASYITGQVIHVNGG 287 L S A +IT + V+GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 2e-07 Identities = 67/368 (18%), Positives = 125/368 (33%), Gaps = 31/368 (8%) Query: 63 YGLGASLFVIGYVIFEVPSNLLLHKFGARKWIARIMISWGVATALMVFVTTEWQFYVLRF 122 YG+ +L+ + L +FG R + + V A+M W Y+ R Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGR- 103 Query: 123 LIGAMEAGFAPGVLYYMTLWFPQSYRGRIISLFFLASAF-SGIFGGPISGVLLSSLDGVM 181 ++ + Y+ R R F+++ F G+ GP+ G G+M Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERAR--HFGFMSACFGFGMVAGPVLG-------GLM 154 Query: 182 NMRGWHWLFLVGGVPCVLLGLCVLTYLKDHIDDAQWLSSSEKVHLKRLVEPKQPEKASHS 241 H F L L L + +R + + + Sbjct: 155 GGFSPHAPFFAAAALNGLNFLTGCFLLPE-----------SHKGERRPLRREALNPLASF 203 Query: 242 LWAAIKTPGLLILGAIYFLIQ-IASYGLNFWGPQLIKSSGIDDTQMIGFLSAIPYLMGAI 300 WA T + L A++F++Q + W D T IG A ++ ++ Sbjct: 204 RWARGMTV-VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT-TIGISLAAFGILHSL 261 Query: 301 TMVIV-GRLADKSGERLKFTAGLLSLGAIGFFTAGFFDANPVVVVISLALLGAGIVAAIP 359 ++ G +A + GER G+++ G+ F + I + L GI +P Sbjct: 262 AQAMITGPVAARLGERRALMLGMIA-DGTGYILLAFATRGWMAFPIMVLLASGGI--GMP 318 Query: 360 SFWNLPPKVLVGAGAGAAGGTALINTLGQVGGIVSPIMVGHIKDITGSTTPALYIIASLC 419 + + + + G G+ + L + IV P++ I + +T IA Sbjct: 319 ALQAMLSRQVDEERQGQLQGS--LAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAA 376 Query: 420 VVCIALLI 427 + + L Sbjct: 377 LYLLCLPA 384
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.9 bits (124), Expect = 2e-10 Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 12/190 (6%) Query: 13 VVNKAIDLFHHRGFHLIGVDRIVKESEITKATFYNYFQSKERLIEICLMVQKEKLQEQVV 72 +++ A+ LF +G + I K + +T+ Y +F+ K L + + + E + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 73 A-MVEYDLSTLAIDKLKKLYYLHTDLEGPYYLLFKAIFEIKNSYPIAYQTAMRYRTWLKN 131 ++ L++ + ++ L + + L I K + + + L Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCL 135 Query: 132 EIYSQLRVLNADA-------SFTDAKLFVYMVEGTIIQLLSS----DGALEREKMLDYFL 180 E Y ++ + + ++ G I L+ + + + +K ++ Sbjct: 136 ESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYV 195 Query: 181 NSFVRNFSPC 190 + + C Sbjct: 196 AILLEMYLLC 205
>PERTACTIN#Pertactin signature. Length = 922 Score = 29.7 bits (66), Expect = 0.047 Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 21/117 (17%) Query: 54 ILKDQNITDLPLYGVPFAV----KDNIDVAGFHTTAACKEVQYLANQDAAVV----AKLK 105 +L D ++T +P G P AV + + V G H T +A D A+V A ++ Sbjct: 202 VLGDTSVTAVPASGAPAAVFVFGANELTVDGGHITGG--RAAGVAAMDGAIVHLQRATIR 259 Query: 106 KAGAIVVGKTNLDQFATGLVGVRSPYGAVKNSFNP--EYISGGSSSGSSVVVANGIV 160 + A G + G P GAV F P + G S S+V +A IV Sbjct: 260 RGDAPAGG---------AVPGGAVPGGAVPGGFGPLLDGWYGVDVSDSTVDLAQSIV 307
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.5 bits (128), Expect = 3e-11 Identities = 17/65 (26%), Positives = 24/65 (36%) Query: 5 EASFRALRVLHTAKDLFNQYGFHKVGIDRIIAESKVTKATFYNHFHSKERLIEMCLTFQK 64 EA +L A LF+Q G + I + VT+ Y HF K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 DGLKE 69 + E Sbjct: 68 SNIGE 72
>PF05860#haemagglutination activity domain. Length = 117 Score = 62.1 bits (151), Expect = 2e-13 Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 29/144 (20%) Query: 76 ADIVADSAANAANRAIIAAGKNSAGKTVPVVNIQTPK-NGISHNIYKQFDVLAEGAVLNN 134 A I D+ + ++ T + + H+ +++F V G N Sbjct: 1 AQITPDTTLPIN-------SNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFN 52 Query: 135 SRQGATTKTVGAVAANPFLATGEARVILNEVNSSAASRFEGNLEVAGQMADVIIANPSGI 194 + + I++ V + S +G + A++ + NP+GI Sbjct: 53 N-------------------PTNIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGI 92 Query: 195 NIKGGGFINANKAIFTTGKPQLNA 218 ++ + + +L Sbjct: 93 IFGQNARLDIGGSFVGSTANRLKF 116
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 33.3 bits (76), Expect = 0.003 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 1/127 (0%) Query: 187 DFLNLQQLDQGLENLKRAYTVDIQILPSNESVQETQGYSDLVIKLQAHSKISLNLGLDNS 246 D + +E V + +G L + Q +L L + Sbjct: 491 DTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQ 550 Query: 247 GSKDTGKYIGSLGVNINNPFYLSDSLSFNFSHSLDNLHRDLNKNYFVSYQLPLGNYDFST 306 T +N F + + ++S + + + ++ ++ +P ++ S Sbjct: 551 TYWGTSNVDEQFQAGLNTAF-EDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSD 609 Query: 307 SYSRYQY 313 S S++++ Sbjct: 610 SKSQWRH 616 Score = 32.5 bits (74), Expect = 0.005 Identities = 30/204 (14%), Positives = 58/204 (28%), Gaps = 24/204 (11%) Query: 221 TQGY---SDLVIKLQAHSKISLNLGLDNSGSKDTGKYI------GSLGVNINNPFYLSDS 271 T GY +D I G+ K T Y G L + + + + Sbjct: 483 TSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTST 542 Query: 272 LSFNFSHSLDNLHRDLNKNYFVSYQLPLGNYDFSTSYSRYQYEQNVLGANSV-------- 323 L + SH ++++ + + +++ SYS + + Sbjct: 543 LYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPF 602 Query: 324 ---LRYHGLSEQGNLNVSRVLSRSG----QHKTSLYGKLYHKQNSNFIDDIEIEVQRRRT 376 LR S+ + + S +S + +YG L N ++ Sbjct: 603 SHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGN 662 Query: 377 SGWNAGIQHRQYLGVAVLDAGLDY 400 SG G + G + Sbjct: 663 SGSTGYATLNYRGGYGNANIGYSH 686
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.011 Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 509 APINGVISAWKVENGEQVTEGQVVAIMEAMKMEVQVLAHRSGVIQIGAE 557 N ++ V+ GE V +G V+ + A+ E L +S ++Q E Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 31.7 bits (72), Expect = 0.005 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 13/91 (14%) Query: 166 NDKTPMAVGSTFKLLVLKTYEDAIKKGELKRETIVSLKEKNRSLPTGVLQNLP-----AG 220 +++ PM STFK+++ + G+ + E + ++++ ++ P Sbjct: 59 DERFPMM--STFKVVLCGAVLARVDAGDEQLERKIHYRQQD------LVDYSPVSEKHLA 110 Query: 221 TPVNLELLAQLMIQISDNTATDSLIEVLKKP 251 + + L I +SDN+A + L+ + P Sbjct: 111 DGMTVGELCAAAITMSDNSAANLLLATVGGP 141
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 69.9 bits (171), Expect = 4e-15 Identities = 77/390 (19%), Positives = 148/390 (37%), Gaps = 45/390 (11%) Query: 23 LVTCLLLMIMDGYDIQSMAYAAPLIIEEW---GVQKSMLGVVFSASLFGLFVGSFLLSSL 79 L+ L + +D I + P ++ + + G++ + F + +L +L Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 80 SDRFGRRPILLISTFIFSILMLLTPHVGNIEQLTVIRFVTGIFLGGIMPNVMAYSSEIVP 139 SDRFGRRP+LL+S ++ + + L + R V GI G AY ++I Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITD 125 Query: 140 YKSRIFTMMVISCGYTVGAMLGGGISALLVPWGGWQAIFYFGGIIPLIIFFITFFKLPES 199 R +S + G + G + L+ + A F+ + + F F LPES Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCFLLPES 184 Query: 200 LYF----LSENSKNSKNSSKILFWLKKFYPALTFNAEIKIINNTEVQVKKSPLELFKNQR 255 L + N S + + + ++++ QV + +F R Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVG----QVPAALWVIFGEDR 240 Query: 256 AFFTYSIWTISILNMISLYFLANWLPTLAKESGLSLNQALLIGSTLQLGGTIGSVVMGLK 315 F + TI I ++ + + + SL QA++ G G ++++G+ Sbjct: 241 --FHWDATTIGI--SLAAFGILH-----------SLAQAMITGPVAARLGERRALMLGMI 285 Query: 316 IDKTGFYKVLIPVFLVAVISVALIGYSVSHIVLLFIIIFIAGFAIVGGQPAINALSASYY 375 D TG+ L+ ++ + I++ +A I G PA+ A+ + Sbjct: 286 ADGTGY---------------ILLAFATRGWMAFPIMVLLASGGI--GMPALQAMLSRQV 328 Query: 376 PVSLRTTGVGWSIGIARLGSVIGPLFGGYL 405 + G + L S++GPL + Sbjct: 329 DEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Score = 35.2 bits (81), Expect = 4e-04 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 8/156 (5%) Query: 280 LPTLAKESGLSLNQALLIGSTLQLGGT---IGSVVMGLKIDKTGFYKVLIPVFLVAVISV 336 LP L ++ S + G L L + V+G D+ G VL+ A + Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 337 ALIGYSVSHIVLLFIIIFIAGFAIVGGQPAINALSASYYPVSLRTTGVGWSIGIARLGSV 396 A++ + + +L+I +AG G A A R G+ G V Sbjct: 88 AIMATA-PFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 397 IGPLFGGYLSQFLVITHL-FVIAAIPSLFVIIMLMI 431 GP+ GG + F H F AA + + Sbjct: 146 AGPVLGGLMGGFSP--HAPFFAAAALNGLNFLTGCF 179
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.7 bits (139), Expect = 2e-12 Identities = 33/169 (19%), Positives = 65/169 (38%), Gaps = 14/169 (8%) Query: 32 ETSSKKLHIIRTAIRLFTTHGFHTTGVDLIVKESEIPKATLYNYFHSKERLIEMCIAFQK 91 E + HI+ A+RLF+ G +T + I K + + + +Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 92 SLLKEDVLAIIYSSRYCTPTDKLKEIVVLHVN---SNSLYHLLLKAFFEIKVAYQQAYRM 148 S + E + + P L+EI++ + + LL++ F + + Sbjct: 68 SNIGE-LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 149 A-------IEYRKWLTREIFELIFSLEIRA-LKPD--ANMVLNLIDGLM 187 +E + + + I + + A L A ++ I GLM Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 265 bits (679), Expect = 8e-87 Identities = 105/430 (24%), Positives = 192/430 (44%), Gaps = 55/430 (12%) Query: 19 PPLPRASLVIWIVGIGLVIFFIWAWFFKLEEVSTGTGKVIPSSKEQVIQSLEGGILTKLN 78 P R LV + + LVI FI + ++E V+T GK+ S + + I+ +E I+ ++ Sbjct: 52 PVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEII 111 Query: 79 VQEGDIVQKGQILAQLDPTRFASNVGESRSLLIAAQATAARLRAEVN------------- 125 V+EG+ V+KG +L +L ++ +++S L+ A+ R + Sbjct: 112 VKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Query: 126 ---GTPLVFPEIVAQDPKLVHEETALYESRRADLEQTL--------------SGLRQALQ 168 V E V + L+ E+ + +++++ E L + + Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSR 231 Query: 169 LVQQELAMTEPLVAKGAASEVEVLRLRREANDLQNKMNDARNQ----------------- 211 + + L L+ K A ++ VL + + N++ ++Q Sbjct: 232 VEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL 291 Query: 212 ----YYVKAREELSKANTDTQTQQQVVMGRNDSLQRAVFKAPVRGVVKEITVTTHGGVIP 267 + + ++L + + + + Q +V +APV V+++ V T GGV+ Sbjct: 292 VTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT 351 Query: 268 QNGKLMTIVPIDEQLLIEARILPRDIAFIRPGQEALVKITAYDYSIYGGLKGKVTVISPD 327 LM IVP D+ L + A + +DI FI GQ A++K+ A+ Y+ YG L GKV I+ D Sbjct: 352 TAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLD 411 Query: 328 TIRDEVKQDQFYYRVYIRTDSDKLYNKEGKAFGITPGMVATVDIRTGEKTVLDYLLKPF- 386 I D+ + + V I + + L + K ++ GM T +I+TG ++V+ YLL P Sbjct: 412 AIEDQ--RLGLVFNVIISIEENCL-STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLE 468 Query: 387 NKAKEALRER 396 E+LRER Sbjct: 469 ESVTESLRER 478
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 28.4 bits (63), Expect = 0.003 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 3 VKN-ILDGVTNILGMDAPKAQVIAPPKQPTRQDSKSPDS--SATIDRVQQAQNSMSGG 57 VK +LD N G D +A + P P +S P + + QAQ+ ++G Sbjct: 63 VKTDVLDLTINTRGGDVEQALL---PAYPKELNSTQPFQLLETSPQFIYQAQSGLTGR 117
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.3 bits (63), Expect = 0.037 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Query: 88 LDDLKSQAESNKSSKSERAKKAAEARWNKEQDTSNTNASTEHQSSNAYAYAQAMHKHDAS 147 L L ++A++ K+ S + + R+ + N E Y Q + + + Sbjct: 127 LTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE-LKLPDEPYFQNVSEEEVL 185 Query: 148 NAQGMLET 155 +++ Sbjct: 186 RLTSLIKE 193
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 1e-12 Identities = 23/49 (46%), Positives = 33/49 (67%) Query: 22 NAHAEVMALLEKPLLAETLIKTRGNQTKAAELLGLNRGTLRQRLKAHNI 70 + V+A +E PL+ L TRGNQ KAA+LLGLNR TLR++++ + Sbjct: 427 GLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 63/327 (19%), Positives = 111/327 (33%), Gaps = 11/327 (3%) Query: 78 FLVPLGDLVNRRRLMTLQLLALISALLMVAFAHSTIVLLTGMLAVGLLGTAMTQGLIAYA 137 L L D RR ++ + L ++A A VL G + G+ G AY Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGA-VAGAYI 120 Query: 138 ASAAAPHEQGHVVGTAQSGVFIGLLLARVFSGGISDIAGWRGVYFCAA--IIMLMIALPL 195 A E+ G + G++ V G + + + AA + + L Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180 Query: 196 WRRLPHLNVQPVTMRYPQLLSSMLKLLRQEKVLQVRGVLALLMFAAFNILWSALVLPLSA 255 +P+ L+S + R V+ + +M + +AL + Sbjct: 181 LPESHKGERRPLRREALNPLAS-FRWARGMTVVAALMAVFFIM-QLVGQVPAALWVIFGE 238 Query: 256 PPYNFSHTVIG-SFGLFGVIGALAATRAGQWADRGYAQRTSLAALLILLLAWWPLSLMTY 314 +++ T IG S FG++ +LA +R +L +I + L Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 315 SLWALVIGIVLLDLGGQALHVTNQSMIFRTRPEAHSRLVGLYMLFYAVGSGLGAISTTAT 374 W +VLL GG + + + E +L G ++ S +G + TA Sbjct: 299 RGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Query: 375 YAYA-----GWLGVCSLGACVSLLALL 396 YA + GW + + L L Sbjct: 359 YAASITTWNGWAWIAGAALYLLCLPAL 385 Score = 33.6 bits (77), Expect = 0.001 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 10/182 (5%) Query: 23 RSVVLLFAIASGASVANVYYAQPLLDILASDFNVSHAVIGGVVTATQIGCALALVFLV-P 81 V L A+ + A + F+ IG + A I +LA + P Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 82 LGDLVNRRRLMTLQLLALISALLMVAFAHSTIVLLTGMLAVGLLGTAMTQGLIAYAASAA 141 + + RR + L ++A + +++AFA + M+ + G M L A + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMP-ALQAMLSRQV 328 Query: 142 APHEQGHVVGTAQS-----GVFIGLLLARVFSGGISDIAGWRGVYFCAAIIMLMIALPLW 196 QG + G+ + + LL +++ + I W G + A + ++ LP Sbjct: 329 DEERQGQLQGSLAALTSLTSIVGPLLFTAIYA---ASITTWNGWAWIAGAALYLLCLPAL 385 Query: 197 RR 198 RR Sbjct: 386 RR 387
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.0 bits (59), Expect = 0.018 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 22 DKAPETGATTGEHLENAAQQATADIKSAGDQAASDIATATDNAS-AKIDAAADHAADATA 80 AP T + T E + ++Q + ++ A A + A AK + A+ + A Sbjct: 1027 PPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA 1086 Query: 81 KAAAETEATARKATADTAQAVENAAADVKKDAQ 113 ++ +ET+ T T +TA + A V+ + Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKT 1119
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 132 bits (334), Expect = 8e-33 Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 32/253 (12%) Query: 1299 DQISGSDIGDTIYGGTGNDIIKGLEGSDQLFGDEGDDWLDGSYENDFIYGGEGNDQLFGG 1358 ++ T G L ++L G D GS D +G +G+D + G Sbjct: 693 EKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGN 752 Query: 1359 DGEDQLEGGNGDDVIDSGEGNDQLIGGTGNDRLLGGEGNDQLQGGEGDDYLEASNGNDFI 1418 DG D+L G G+D + G G+DQL GG GND+L+G GN+ L GG+GDD + Sbjct: 753 DGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQG----- 807 Query: 1419 EGGTGNDQLIGGSGEDSLYGNDGDDHLYGGDGNDILSGGQGNNILEGGNGEDEYVFDILG 1478 + L GG G D LYG++G D L GG+G+D+L GG GN+I Y + Sbjct: 808 -NSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDI---------YRYLSGY 857 Query: 1479 YNNVINDT--DASVLRFLSVSSENIKLEIVGNNLNIF--------YGVDSSVTITDF--- 1525 +++I+D L + ++ + GN+L ++ G + +T ++ Sbjct: 858 GHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEK 917 Query: 1526 ----ILNYNIKEI 1534 I N+ I++I Sbjct: 918 ESGDISNHEIEQI 930 Score = 124 bits (312), Expect = 4e-30 Identities = 72/187 (38%), Positives = 102/187 (54%), Gaps = 10/187 (5%) Query: 1293 HLLGG--DDQISGSDIGDTIYGGTGNDIIKGLEGSDQLFGDEGDDWLDGSYENDFIYGGE 1350 L+G D+ GS D +G G+D+I+G +G+D+L+GD+G+D L G +D +YGG+ Sbjct: 721 ELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGD 780 Query: 1351 GNDQLFGGDGEDQLEGGNGDDVI---DSGEGNDQLIGGTGNDRLLGGEGNDQLQGGEGDD 1407 GND+L G G + L GG+GDD + + L GG GND+L G EG D L GGEGDD Sbjct: 781 GNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDD 840 Query: 1408 YLEASNGNDF--IEGGTGNDQLI-GGSGEDSLYGNDG--DDHLYGGDGNDILSGGQGNNI 1462 L+ GND G G+ + G ED L D D + +GND++ N+ Sbjct: 841 LLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNV 900 Query: 1463 LEGGNGE 1469 L G+ Sbjct: 901 LSIGHKN 907 Score = 108 bits (272), Expect = 2e-25 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 38/270 (14%) Query: 876 EGNDGNDEIWGQGGNDTINGGDGEDRISGD-----GINID---VQYHGDDTVS---GGNG 924 DG+D+++ G+ I G G D + D + ID G+ TV+ GG+ Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 925 NDLIWGEGGSDTIYGGEGE---------DYIEGDETSIHIQYHKDDLLYGGEGNDTIFGD 975 L + G E +I G + + + L G D FG Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGS 734 Query: 976 GGRDIIYGGKDNDYIYGDSNQIDIQYHNNDTLYGDAGNDNIRGDGGSDIIYGGDGDDFLV 1035 DI +G +D I G ND LYGD GND + G G D +YGGDG+D L+ Sbjct: 735 KFTDIFHGADGDDLIEG--------NDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLI 786 Query: 1036 ADVINNRAFDGDDQLYGGNGKDSLSGFDGN---DTLDGGAGDDIIFGGKGDDYFISNEGN 1092 G++ L GG+G D + + L GG G+D ++G +G D EG+ Sbjct: 787 GV-------AGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGD 839 Query: 1093 DQLSGGEGNDIYHIQVRDSEVKVLDSSGEN 1122 D L GG GNDIY + D G+ Sbjct: 840 DLLKGGYGNDIYRYLSGYGHHIIDDDGGKE 869 Score = 102 bits (256), Expect = 1e-23 Identities = 97/384 (25%), Positives = 146/384 (38%), Gaps = 68/384 (17%) Query: 559 NIVFSGGGRDQVYGGVGNDIIMTSSRLNAVKDSLLNQMGDADTGLTDLDKEYNILNFNFE 618 + VF G +Y G G+D++ D D K N+ Sbjct: 621 DKVFLSAGSANIYAGKGHDVVYYDK-------------TDTGYLTIDGTKATEAGNYTVT 667 Query: 619 INLGDNNRFSHYT----NNSIGQITEQI--LPSFNIYYTGKNGKYYIYNLLESLNYGHGY 672 LG + + S+G+ TE+ + GKN + L S+ Sbjct: 668 RVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKN--LTETDNLYSVEE---- 721 Query: 673 AGSDIAYGGIGNDIILGSSDTDFLYGAVGDDAIYGMDGKDYLYGGENKDILYGGDGADQI 732 G D GS TD +GA GDD I G DG D LYG + D L GG+G DQ+ Sbjct: 722 -----LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQL 776 Query: 733 IGGQGDDELTGGLEGDELYGGDGDDIIQADLNDSIDTLAPPVEPKTYSRFGHDLVYGGAG 792 GG G+D+L G + L GGDGDD Q N ++++GG G Sbjct: 777 YGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNS----------------LAKNVLFGGKG 820 Query: 793 KDQIWGNLGSDEIYGDDDDDQIAGDHPNLAGDIHGDDYLYG-GNGNDQIVGDGG------ 845 D+++G+ G+D + G + DD + G + N D Y Y G G+ I DGG Sbjct: 821 NDKLYGSEGADLLDGGEGDDLLKGGYGN-------DIYRYLSGYGHHIIDDDGGKEDKLS 873 Query: 846 ------KDIIQGGNGNDLIFGDNSELDGKYHAEDNIEGNDGNDEIWGQGGNDTINGGDGE 899 +D+ GNDLI ++ I + ++ G N I + Sbjct: 874 LADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDK 933 Query: 900 D--RISGDGINIDVQYHGDDTVSG 921 I+ D + ++Y + + Sbjct: 934 SGRIITPDSLKKALEYQQRNNKAS 957 Score = 91.6 bits (227), Expect = 3e-20 Identities = 81/324 (25%), Positives = 121/324 (37%), Gaps = 35/324 (10%) Query: 787 VYGGAGKDQIWGNLGSDEIYGDDDDDQIAGDHPNL-AGDIHGDDYLYGGNGNDQIVGDGG 845 + G G D+++ + GS IY D + D + I G GN V G Sbjct: 614 SHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGD 673 Query: 846 KDIIQGGNGN-DLIFGDNSELDGKYHAEDNIEGNDGNDEIWGQGGNDTINGGDGEDRISG 904 ++Q ++ G +E E E + + G D+ G Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFG 733 Query: 905 DGINIDVQYHGDDTVSGGNGNDLIWGEGGSDTIYGGEGEDYIEGDETSIHIQYHKDDLLY 964 D G +G+DLI G G+D +YG +G D + G DD LY Sbjct: 734 SKFT--------DIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGN--------GDDQLY 777 Query: 965 GGEGNDTIFGDGGRDIIYGGKDNDYIYGDSNQIDIQYHN----NDTLYGDAGNDNIRGDG 1020 GG+GND + G G + + GG +D N + ND LYG G D + G Sbjct: 778 GGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGE 837 Query: 1021 GSDIIYGGDGDDFLVADVINNRAFDGDDQLY-GGNGKDSLSGFDGNDTLDGGAGDDIIFG 1079 G D++ GG G+D + G + G +D LS D + D+ F Sbjct: 838 GDDLLKGGYGNDIYR-----YLSGYGHHIIDDDGGKEDKLSLADID-------FRDVAFK 885 Query: 1080 GKGDDYFISNEGNDQLSGGEGNDI 1103 +G+D + + LS G N I Sbjct: 886 REGNDLIMYKGEGNVLSIGHKNGI 909 Score = 87.7 bits (217), Expect = 5e-19 Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 32/215 (14%) Query: 2446 VFKLIFVVQNQTINGTSNADTLYGASGNDTLTGQAGNDILYGQAGNDTLNGGTGNDTMYG 2505 V +LI + G+ D +GA G+D + G GND LYG GNDTL+GG G+D +YG Sbjct: 719 VEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYG 778 Query: 2506 GKGDDTYIVDSTADVISESVNEGTDIVQSSVTYTLLNNVENLTLTGTTAINGTGNALNNV 2565 G G+D I + + ++ +G D Q + NV Sbjct: 779 GDGNDKLIGVAGNNYLNGG--DGDDEFQV----------------------QGNSLAKNV 814 Query: 2566 IVGNSAINTLTGGVGDDYLNGGVGADKLLGGIGNDSYVIDNT--GDIVTENAGEGIDTVL 2623 + G + L G G D L+GG G D L GG GND Y + I+ ++ G+ L Sbjct: 815 LFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSL 874 Query: 2624 SSITYT------LGNNLENLTLIGSTAINGTGNAL 2652 + I + GN+L G+ G N + Sbjct: 875 ADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGI 909 Score = 79.6 bits (196), Expect = 1e-16 Identities = 85/425 (20%), Positives = 139/425 (32%), Gaps = 107/425 (25%) Query: 1318 IIKGLEGSDQLFGDEGDDWLDGSYENDFIYGGEGNDQLFGGDGEDQLE------------ 1365 +G D++F G + +D +Y + + DG E Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGG 672 Query: 1366 ---------------------------------GGNGDDVIDSGEGNDQLIGGTGNDRLL 1392 G D+ ++LIG T D+ Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFF 732 Query: 1393 GGEGNDQLQGGEGDDYLEASNGNDFIEGGTGNDQLIGGSGEDSLYGNDGDDHLYGGDGND 1452 G + D G +GDD IEG GND+L G G D+L G +GDD LYGGDGND Sbjct: 733 GSKFTDIFHGADGDDL---------IEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGND 783 Query: 1453 ILSGGQGNNILEGGNGEDEYVFDILGYNNVINDTDASVLRFLSVSSENIKLEIVGNNLNI 1512 L G GNN L GG+G+DE+ + + ++ G++ Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDD--- 840 Query: 1513 FYGVDSSVTITDFILNYNIKEIQFSDTVWYPEDLSQKINFLHNGSDGNDIIV-GNPYFNN 1571 L G GNDI + Y ++ Sbjct: 841 ----------------------------------------LLKGGYGNDIYRYLSGYGHH 860 Query: 1572 TVYSKNGDD---AIYGGSGVDYIYGGNGNDAIVDPGNIGFLYGGEGDDNLIGNNNSEFYG 1628 + G + ++ D + GND I+ G L G + N + G Sbjct: 861 IIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESG 920 Query: 1629 GEGYDSY-QVNGRNTKIFDSD-----FKGSIYIHNASDIHESNYVQEKANMIISPFINSL 1682 Q+ ++ +I D + + AS ++ ++ + + ++P IN + Sbjct: 921 DISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALAYGSQGDLNPLINEI 980 Query: 1683 SEFLS 1687 S+ +S Sbjct: 981 SKIIS 985 Score = 79.6 bits (196), Expect = 1e-16 Identities = 62/224 (27%), Positives = 94/224 (41%), Gaps = 36/224 (16%) Query: 919 VSGGNGNDLIWGEGGSDTIYGGEGEDY------------IEGDETSIHIQYHKDDLLYGG 966 G+G+D ++ GS IY G+G D I+G + + Y +L G Sbjct: 614 SHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGD 673 Query: 967 --------EGNDTIFGDGGRDIIYGGKDNDYIYGDSNQIDIQYHNNDTLYGDAGNDNIRG 1018 + + G Y + +I G + ++ + L G D G Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFG 733 Query: 1019 DGGSDIIYGGDGDDFLVADVINNRAFDGDDQLYGGNGKDSLSGFDGNDTLDGGAGDDIIF 1078 +DI +G DGDD + + DG+D+LYG GNDTL GG GDD ++ Sbjct: 734 SKFTDIFHGADGDDLIEGN-------DGNDRLYGD---------KGNDTLSGGNGDDQLY 777 Query: 1079 GGKGDDYFISNEGNDQLSGGEGNDIYHIQVRDSEVKVLDSSGEN 1122 GG G+D I GN+ L+GG+G+D + +Q VL N Sbjct: 778 GGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGN 821 Score = 75.4 bits (185), Expect = 3e-15 Identities = 58/258 (22%), Positives = 97/258 (37%), Gaps = 45/258 (17%) Query: 1816 GNGNDQINSGLGSSQVYAGEGDDVI-----------------ITPDVFAIDKISGGAGN- 1857 G+G+D++ GS+ +YAG+G DV+ + + ++ GG Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 1858 --DVIYTYDPLSNNQISNSPYLNINLAR---NIYDIKDVVYGGEGDDYIYLGNQKTEAYG 1912 +V+ + + + Y + D +Y E + + + +G Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVE---ELIGTTRADKFFG 733 Query: 1913 DDGNDIIVSYSLSSNIQFLYGGDGNDTLKAGDGGAYLDGGAGTDHLVGGSGDDTFIVDEQ 1972 DI + + + G DGND L G L GG G D L GG G+D I Sbjct: 734 SKFTDI---FHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAG 790 Query: 1973 DTYEENDPNGGYDTIHISQNIDLSLGYLEAVTLLGSQNLSIYGNTSDNKLIGNAGNNYID 2032 + Y + G D + N ++G ++KL G+ G + +D Sbjct: 791 NNYL--NGGDGDDEFQVQGN--------------SLAKNVLFGGKGNDKLYGSEGADLLD 834 Query: 2033 GRAGSDYMQGGLGNDYYV 2050 G G D ++GG GND Y Sbjct: 835 GGEGDDLLKGGYGNDIYR 852 Score = 68.1 bits (166), Expect = 4e-13 Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 44/190 (23%) Query: 1802 DYVGGTGSGDIIYAGNGNDQINSGLGSSQVYAGEGDDVIITPDVFAIDKISGGAGNDVIY 1861 D G+ DI + +G+D I G+ ++Y +G+D +SGG G+D + Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDT-----------LSGGNGDDQL- 776 Query: 1862 TYDPLSNNQISNSPYLNINLARNIYDIKDVVYGGEGDDYIYLGNQKTEAYGDDGNDIIVS 1921 YGG+G+D + G DG+D Sbjct: 777 -------------------------------YGGDGNDKLIGVAGNNYLNGGDGDDEFQV 805 Query: 1922 YSLSSNIQFLYGGDGNDTLKAGDGGAYLDGGAGTDHLVGGSGDDTFIVDEQDTYEENDPN 1981 S L+GG GND L +G LDGG G D L GG G+D + + D + Sbjct: 806 QGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDD 865 Query: 1982 GG-YDTIHIS 1990 GG D + ++ Sbjct: 866 GGKEDKLSLA 875 Score = 67.3 bits (164), Expect = 9e-13 Identities = 77/391 (19%), Positives = 145/391 (37%), Gaps = 74/391 (18%) Query: 1887 DIKDVVYGGEGDDYIYLGNQKTEAYGDDGNDIIVSYSLSSNIQFLYGGD-----GNDTLK 1941 +I+ + G+GDD ++L Y G+D+ V Y + G GN T+ Sbjct: 609 EIRIESHLGDGDDKVFLSAGSANIYAGKGHDV-VYYDKTDTGYLTIDGTKATEAGNYTVT 667 Query: 1942 ---AGDGGAYLDGGAGTDHLVGGSGDDTFIVDEQDTYEENDPNGGYDTIHISQNIDLSLG 1998 GD + + VG + T + T+ D ++ + + +G Sbjct: 668 RVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEEL---IG 724 Query: 1999 YLEAVTLLGSQ----------NLSIYGNTSDNKLIGNAGNNYIDGRAGSDYMQGGLGNDY 2048 A GS+ + I GN +++L G+ GN+ + G G D + GG GND Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 2049 YVVDTTETIETDENGNTYFIEGDQVVEDVDGGIDTLERWEDARFISQDENGNPVLTDSYK 2108 + GN Y GD G+ D ++ Sbjct: 785 LI---------GVAGNNYLNGGD---------------------------GD----DEFQ 804 Query: 2109 ILENNIENLILKGNA--KTGFGNDLDNIIVGNEQDNYIDGLAGNDTYIFSRGGGTDTYSF 2166 + N++ +L G +G++ +++ G E D+ + G GND Y + G G Sbjct: 805 VQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHI--I 862 Query: 2167 EDNIDAVNILKIQGYSANDVSAQKYGDSVYLSFK-------GTNDHIWLSNYYIADTENT 2219 +D+ + L + DV+ ++ G+ + + G + I N++ ++ + Sbjct: 863 DDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDI 922 Query: 2220 -TYKMDQINFDSGVIWGVDDINTLVNRALTN 2249 ++++QI SG I D + + N Sbjct: 923 SNHEIEQIFDKSGRIITPDSLKKALEYQQRN 953 Score = 65.4 bits (159), Expect = 3e-12 Identities = 73/305 (23%), Positives = 106/305 (34%), Gaps = 69/305 (22%) Query: 2480 AGNDILYGQAGNDTLNGGTGNDTMYGGKGDDTYIVDSTADVISESVNEGTDIVQSSVTYT 2539 G+D ++ AG+ + G G+D +Y K D Y+ T D T+ +VT Sbjct: 618 DGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYL---TIDGTKA-----TEAGNYTVTRV 669 Query: 2540 LLNNVENLTLTGTTAINGTGNALNNVIVGNSAINTLTGGVGDDYLNGGVGADKLLGGIGN 2599 L +V+ L G + T G + ++L+G Sbjct: 670 LGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYE-FTHINGKNLTETDNLYSVEELIGTTRA 728 Query: 2600 DSYVIDNTGDIVTENAGEGIDTVLSSITYTLGNNLENLTLIGSTAINGTGNALNNVLVGN 2659 D + DI + +G D + GN N+ L G+ Sbjct: 729 DKFFGSKFTDIF--HGADGDDLI-------------------------EGNDGNDRLYGD 761 Query: 2660 SAINTLTAGVGDDYLDGGAGADKLLGGIGNDTYVIDNTGDIVTENAGEGIDTVLSSITYT 2719 +TL+ G GDD L GG G DKL+G GN+ Y+ GD + G + Sbjct: 762 KGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN-YLNGGDGDDEFQVQGNSLAK-------- 812 Query: 2720 LSSNLENLTLTGSTAINATGNTLNNTLTGNSGVNALNGGAGNDILDGQGGNDQLTGGTGI 2779 N L G G + L G G D+LDG G+D L GG G Sbjct: 813 ------------------------NVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGN 848 Query: 2780 DTALY 2784 D Y Sbjct: 849 DIYRY 853 Score = 60.0 bits (145), Expect = 1e-10 Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 8/194 (4%) Query: 329 IVSGDGDDSITGTKYSDALYGGSDDDSLNGAEDNDYLNGGVGNDILDGGEGDDNLVDEKG 388 ++ D G+K++D +G DD + G + ND L G GND L GG GDD L G Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG 781 Query: 389 NDTYIFNGNFGKDSIYDLDGNGQIKIDDIALSV----GEKINNKLWKS--ADGQYSLALV 442 ND I G G + + DG+ + ++ +L+ G K N+KL+ S AD Sbjct: 782 NDKLI--GVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGD 839 Query: 443 EDFDGVATTQKVVISKEDDNNSIIIKYFKNGALGLNFGDLENNSTPPSDTSIYAFGSEGN 502 + G ++ I K L L D + + + + EGN Sbjct: 840 DLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGN 899 Query: 503 NIIFGERYVASFSG 516 + G + +F Sbjct: 900 VLSIGHKNGITFRN 913 Score = 58.4 bits (141), Expect = 4e-10 Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 31/123 (25%) Query: 328 SIVSGDGDDSITGTKYSDALYGGSDDDSLNGAEDNDYLNGGVGNDI-------------- 373 + G+D+++G D LYGG +D L G N+YLNGG G+D Sbjct: 757 RLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLF 816 Query: 374 ----------------LDGGEGDDNLVDEKGNDTYIFNGNFGKDSIYDLDG-NGQIKIDD 416 LDGGEGDD L GND Y + +G I D G ++ + D Sbjct: 817 GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLAD 876 Query: 417 IAL 419 I Sbjct: 877 IDF 879 Score = 45.7 bits (108), Expect = 3e-06 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 13/89 (14%) Query: 498 GSEGNNIIFGERYVASFSGNDFIHATNEDAVIIAGDGNDLISTGDGNDVIYAG------- 550 G++GN+ ++G++ GND + N D + GDGND + GN+ + G Sbjct: 751 GNDGNDRLYGDK------GNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQ 804 Query: 551 VVTSDQDSNIVFSGGGRDQVYGGVGNDII 579 V + N++F G G D++YG G D++ Sbjct: 805 VQGNSLAKNVLFGGKGNDKLYGSEGADLL 833
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.0 bits (80), Expect = 4e-04 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 84 EREIAEYHGKKKQASEAGKASAAKRAAKKKGSSNSDSSKDDQASNENSTVVENPLNEEQT 143 RE K+ S+ + ++ AK+ S+ + N ++VVENP N Sbjct: 1146 ARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPA 1205 Query: 144 DVQPTNNHKPLTINQEPIIDSSSNAREENSQFTPIQFAQYQIDDHKRYSMREFISEYS 201 QPT N ++ + + R S ++ A +D ++ + S + Sbjct: 1206 TTQPTVN------SESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNT 1257
>PF06291#Lambda prophage Bor protein Length = 102 Score = 37.3 bits (86), Expect = 2e-06 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 13/51 (25%) Query: 1 MKKILFSSFLAMSLVGCAAGPQPLYNWGTYTHQTYLMYNAPEKATPNTQIT 51 MKK+LFS+ LAM + GCA QT+ + N P TP IT Sbjct: 6 MKKMLFSAALAMLITGCAQ-------------QTFTVGNKPTAVTPKETIT 43
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.0 bits (176), Expect = 7e-18 Identities = 28/193 (14%), Positives = 71/193 (36%), Gaps = 11/193 (5%) Query: 9 KKYPKRDIVLSTATQLFIQENYISVGVDRIIAEADIAKATFYKHFPSKEELVFYCLKQLK 68 + R +L A +LF Q+ S + I A + + Y HF K +L + + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 69 LDIQMAVEEHISKLT-TPLEKLEQLYLWYIDWVNQN----GVRGCPFHKAGM--EVGNLY 121 +I E+ +K PL L ++ + ++ + FHK E+ + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 122 PSIQVALDEYWNWLFNLTTSILKEMEIK---DPIALTRLVLSLLDGIINSSVCEQGPIE- 177 + + E ++ + ++ + ++ + G++ + + + Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL 187 Query: 178 PEKTWEFIQTLIE 190 ++ +++ L+E Sbjct: 188 KKEARDYVAILLE 200
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.041 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 10/76 (13%) Query: 48 LFIGILLPMFAGIALLANAIAWLNHRQWRRTALGTIG-PILVLAAVFLMRAYGWQSGGLL 106 LF I+L L N R T + TI P+++L ++ A+G+ L Sbjct: 344 LFEAIMLVFLVMYLFLQN---------MRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394 Query: 107 YVGLALMVGVSVWDFI 122 G+ L +G+ V D I Sbjct: 395 MFGMVLAIGLLVDDAI 410
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.7 bits (69), Expect = 0.009 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 89 TFKDWQAYFNQARADHLNELRQHRYSETLNAAKLDNRLE-EILKSYSAVLVVRVDLAYVV 147 TF++W + ++H E + + L LE + + ++ + LAY Sbjct: 910 TFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDALAYGS 969 Query: 148 SPDIEQVDNDLETL 161 D+ + N++ + Sbjct: 970 QGDLNPLINEISKI 983
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.5 bits (63), Expect = 0.018 Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 3/187 (1%) Query: 3 EQLQRLQAHIGVLKTRLHHLESENSALSEAKELAETEHHAQVVQKNSIITKKQE---EIE 59 + L + LK L E S E + + + + +K + +E Sbjct: 71 LKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALE 130 Query: 60 TLTEQLTQLQGQFQQLNQDANTLAERYSRLEKSTTDLKNRFQEILAERNELRVTKEKLQS 119 T + + L + LA R + LEK+ N A+ L K L++ Sbjct: 131 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 120 QQRQTQQELHDLQQDRDRLLQKNELAKAKVEAIIQRLAILGTAQDQHAQEIQQLAHPNAE 179 +Q + ++ L K + +A+ A+ R A L A + + Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 180 AGEETQS 186 E + Sbjct: 251 LEAEKAA 257
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 29.9 bits (67), Expect = 0.042 Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 106 NIPFDPIFIEKVIVNKNTDNIRYGGNAIGGSVQIESGLIPKKIEEKPN 153 N+ + KV++N+ T I G + V + G + ++ E P Sbjct: 252 NLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQ 299
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.011 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 17/190 (8%) Query: 37 DPKGLKSALQSERDAAKNAKLELQKLQKQFEGIDPEIVKKVFAQIDQDEEAKLIAEGKVN 96 P + +E A+N+K E + ++K + D ++ ++ ++ + A + N Sbjct: 1027 PPAPATPSETTET-VAENSKQESKTVEKNEQ--DATETTAQNREVAKEAKSNVKANTQTN 1083 Query: 97 EVIQKRTE---KMREEHEKLLKAEKERADKAEAYAQKFKQSVIQSQIV-----QAAIELE 148 EV Q +E E ++ EKE K E + + + SQ+ ++ + Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 149 ALPEATPDIAFLAQSKFAL-----DENGKAVAVDENGEVVIGKDGQTPMTPKEWVESLRE 203 A P D + + D A N E + + Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 204 QKPYYWPKPN 213 P N Sbjct: 1203 TPATTQPTVN 1212
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 28.8 bits (64), Expect = 0.006 Identities = 10/46 (21%), Positives = 19/46 (41%) Query: 10 TRKKEPKTKPKSRPLPKPTQKYLEAEATLKEELEDLSIGFEQKFQP 55 K+ P K +P PKP K ++ K +++ + F+ Sbjct: 86 PPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFEN 131
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.7 bits (64), Expect = 0.013 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 174 PILLAQKNEQKVHIPVSNEEAQKHLKSLMERLKI-NGRKPAPVQKLQAKEKEPELA---- 228 P L+ K + VS+ A L++ ++ K+ N P Q L++ + P L Sbjct: 31 PNLMGNKEKADKQKAVSDIVA---LENALDMYKLDNHHYPTTNQGLESLVEAPTLPPLAA 87 Query: 229 --------KELGPDPFDNPYEY 242 K L DP+ N Y Sbjct: 88 NYNKEGYIKRLPADPWGNDYVL 109
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.003 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 9/118 (7%) Query: 138 KPTEEVEEEKPSESHAESLKVKNSKPEVVEKAQTAEPAIESETADSEYQKKLDTLLQRVK 197 K E E+ + + K + E V+ AEPA E++ + + + + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ--AEPARENDPTVNIKEPQ-------SQ 1161 Query: 198 DSKTPDEVNAVYRYTRTWSDKQMEPLLLATHKRLEELEKSKAQATEPPSLMVQIQNAP 255 + T D + E + T + E ++ AT P++ + N P Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 9e-05 Identities = 49/275 (17%), Positives = 90/275 (32%), Gaps = 46/275 (16%) Query: 62 NTYGIFAAGY-----FFRPLGGVVMAHFGDLVGRKKLFSLSILLMALPTLFIGILPTFEN 116 YGI A Y P+ G D GR+ + +S+ A+ + P Sbjct: 43 AHYGILLALYALMQFACAPVLG----ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW- 97 Query: 117 IGYLAPLLLLLMRMVQGIAIGGEIPAAWTFVSEHVPE----RKIGLANGLLTAGLSLGIL 172 +L + R+V GI G A ++++ R G + G+ G + Sbjct: 98 -------VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPV 149 Query: 173 LGALMSLWISLNFSEGQIHDWAWRIPFIVGGIFGLVALYLRTYLKETPVFKAMQARKEIS 232 LG LM G PF + +L + + + Sbjct: 150 LGGLM----------GGFSP---HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREA 196 Query: 233 KEMPVKQVLKTHKTAVAIGMLFTWFLTGCVVVVILAMPNLLIGSFGFERAQ------TFE 286 T VA ++ +F+ + ++ +P L FG +R Sbjct: 197 LNPLASFRWARGMTVVAA-LMAVFFI----MQLVGQVPAALWVIFGEDRFHWDATTIGIS 251 Query: 287 MQSAAIVMQMVGCILAGYFADRFGCGKVMMVGALA 321 + + I+ + ++ G A R G + +M+G +A Sbjct: 252 LAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 101 bits (253), Expect = 7e-28 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 12/259 (4%) Query: 5 VEGKVAVVTGGSSGIGLAAVEILVAEGAKVAW--CGRDEERLNASKHYILEKFPHANIFT 62 +EGK+A +TG + GIG A L ++GA +A ++ S + A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 KACNVLKKEEVQQFAKEVKLNLGNVDMLINNAGQGRVSNFENTQDEDWMKEIELKYFSVL 122 + E + +E+ G +D+L+N AG R + DE+W + V Sbjct: 66 VRDSAAIDEITARIEREM----GPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 123 HPVRAFLDDLKQSANASITNVNSLLALQPEPHMIATSSARAALLNLTHSLAHEFTQYGVR 182 + R+ + + SI V S A P M A +S++AA + T L E +Y +R Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 183 VNSILLGMVESA-QWKRRYETRSDLNLSWKEWTGNIAKNR-GIPMQRLGRPEEPARALVF 240 N + G E+ QW +D N + + G++ + GIP+++L +P + A A++F Sbjct: 182 CNIVSPGSTETDMQW----SLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 241 LASPLASYTTGSAIDVSGG 259 L S A + T + V GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 1e-07 Identities = 74/363 (20%), Positives = 131/363 (36%), Gaps = 26/363 (7%) Query: 52 AKLGWLMTSFLLAYGFSSVFLSFLGDIFNPKKMLFWSVTSWGLLMLCMGFTTSYSGMLIL 111 A G L+ + L + L L D F + +L S+ + M + I Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 112 RVLLGLAEGPLFALAYTIVKQTYTDRQQARASTMFLLGTPIGA-FLGFPITAAVLAHHDW 170 R++ G+ I T RA + G + P+ ++ Sbjct: 103 RIVAGITGATGAVAGAYIADIT---DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP 159 Query: 171 HTTFFVMAALTLIAILSIVFGLRNLQL--KKTVELEGESKRTNFKGHIANTKVLVSNSAF 228 H FF AAL + L+ F L ++ + E + +F+ T V + F Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVF 219 Query: 229 WLVCLFNIALMTYLWGLNS-----WVPSYLMQDKGFNLKEFGVYSSFPFIAMLIGEVVGA 283 +++ L LW + W + G +L FG+ S AM+ G Sbjct: 220 FIMQLVGQVPAA-LWVIFGEDRFHWDAT----TIGISLAAFGILHSL-AQAMITG----- 268 Query: 284 FLSDKLGRRAIQVFSGLLLAGIFMYVMVIMTEPLLIIAAMSLSAMAWGFGVAAVFALLAR 343 ++ +LG R + G++ G ++ T + M L A + G G+ A+ A+L+R Sbjct: 269 PVAARLGERRA-LMLGMIADGTGYILLAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSR 326 Query: 344 VTTSNVGATAGGIFNGLGNFASAIAPVLIGYIVMQTHSFNLGITFLAAVAVIGSLFLVPL 403 G L + S + P+L I + + G ++A A+ L +P Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALY--LLCLPA 384 Query: 404 LKR 406 L+R Sbjct: 385 LRR 387
>PF06704#DspF/AvrF protein Length = 129 Score = 27.9 bits (62), Expect = 0.031 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 185 PEVSAFLKNMHEAQGTKIHLDSKSLHLVEAPDQKVEVVNHPQHSQLFDCVV 235 + S +K++ GT + + L ++ D + V+ P HS + V+ Sbjct: 6 TDFSRLIKSLGAQLGTSLTAQNGVCALYDSQDNEAAVIEMPDHS---EMVI 53
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.6 bits (121), Expect = 7e-09 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 1/174 (0%) Query: 41 IATFFDAYTVLAIAFALPQLITEWHLTPAYVGAIIAAGYVGQLVGAIFFGSLAEKVGRLK 100 I +FF + + +LP + +++ PA + A + +G +G L++++G + Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 101 VLSFTILLFVAMDISCLFAWSGMSLLIF-RFLQGVGTGGEVPVASAYINEFIGAEKRGKF 159 +L F I++ + S SLLI RF+QG G + + +I E RGK Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 160 FLLYEVLFPLGLMFAGMAAFFLMPIYGWKVMFIVGLVPSLLVIPLRFFLPESPR 213 F L + +G + W + ++ ++ + V L L + R Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194
>PF07824#Type III secretion chaperone Length = 120 Score = 27.2 bits (60), Expect = 0.004 Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 5 IINQNVQANGDYEVHNLTTGCSFMPYPQNRVDL 37 +++ +V + E ++ C F P+N DL Sbjct: 25 MLDDDVLIYIEKEGDSINLLCPFCALPENINDL 57
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 26.3 bits (57), Expect = 0.008 Identities = 8/25 (32%), Positives = 14/25 (56%) Query: 30 TFSVATTEFWKDKTTGERKEANSIN 54 T+S T E W+D+T + A ++ Sbjct: 307 TYSSRTAEQWQDQTPDSVRYALGMD 331
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 106 bits (267), Expect = 5e-27 Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 20/397 (5%) Query: 27 FMVVLDTTIANVSVPHITGNLAVSSTQGTWVVTSYAVAEAICVPLTGWLAGRFGTVRVFI 86 F VL+ + NVS+P I + WV T++ + +I + G L+ + G R+ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 87 FGLIGFTVFSFLCGLATS-LEMLVFFRIGQGLCGGPLMPLSQTLLMRIFPQEKHAQAMGL 145 FG+I S + + S +L+ R QG L ++ R P+E +A GL Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 146 WAMTTVVGPILGPILGGLISDNLSWHWIFFINLP-VGIVCVLAAMRLLRVAETETISLRI 204 +G +GP +GG+I+ + HW + + +P + I+ V M+LL+ I Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 205 DTVGLGLLILWIGALQLMLDLGHERDWFNSTSIVVLALTAAIGFVVFLIWELTDKHPVVD 264 G++++ +G + ML F S+ + F++F+ P VD Sbjct: 202 ----KGIILMSVGIVFFMLFTTSYSISFLIVSV--------LSFLIFVKHIRKVTDPFVD 249 Query: 265 VKVFRHRGFAISVLALSLGFGAFFGSIVLIPQWLQM--NLSYTATWAGYLTATMGFGSLT 322 + ++ F I VL + FG G + ++P ++ LS + + + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 323 MSPIVAKLSTKHDPRALASFGLILLGIVTLMRAFWTTDADFMALAWPQILQGFAVPFFFI 382 I L + P + + G+ L + L +F + + + + F Sbjct: 310 -GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF-LLETTSWFMTIIIVFVLGGLSFTKT 367 Query: 383 PLSNIALGSVLQQEIASAAGLMNFLRTMAGAIGASIA 419 +S I S+ QQE + L+NF ++ G +I Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 114 bits (288), Expect = 2e-30 Identities = 70/411 (17%), Positives = 156/411 (37%), Gaps = 70/411 (17%) Query: 25 KRKKFLGFFALILLIAAILYAIWALFLNHSVSTDNAYVGAETAQITSMVSGQVAQVLVKD 84 +R + + +F + L+ A + ++ + + + +I + + V +++VK+ Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 85 TQTVHRGDVLVRIDDR--DAKIALAQAEAELAKAKRQYKQTAANSSSLNS---------- 132 ++V +GDVL+++ +A Q+ A+ ++ Q + S LN Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 133 -------QVVVRADE-----INSAKAQVAQAQADYDKAALE------------------- 161 + V+R ++ + Q Q + + DK E Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 162 --LNRRAQLAASGAVSKEELTKAQSAVETAKAGLELAKAGLAQATSSRKAAESTLAANEA 219 L+ + L A++K + + ++ A L + K+ L Q S +A+ Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 220 LIQGVSETST------PDVQVAQAHVEQAQLDLERTVIRAPVDGVITRRNIQ-VGQRVAP 272 L + +E ++ + + + + + +VIRAPV + + + G V Sbjct: 295 LFK--NEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352 Query: 273 GTSMMMIVPLND-LYVDANFKESQLKKVRPGQPVTLTSDLYGDDVEYHGKVVGFSGGTGS 331 ++M+IVP +D L V A + + + GQ + + + +G +VG Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF--PYTRYGYLVG------- 403 Query: 332 AFALIPAQNATGNWIKVVQRLPVRIALDPKELAEH----PLRVGLSMEAKV 378 I + +V V I+++ L+ PL G+++ A++ Sbjct: 404 KVKNINLDAIEDQRLGLVFN--VIISIEENCLSTGNKNIPLSSGMAVTAEI 452
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 46.7 bits (111), Expect = 5e-08 Identities = 24/159 (15%), Positives = 57/159 (35%), Gaps = 36/159 (22%) Query: 4 NVLITGASGFIGTHLIRFLLQKNYNVIAV-------------TRQA-----------GKK 39 L+TGA+GFIG H+ + LL+ + V+ + R Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 40 SDHPALQWVQKFEDISTRQIDYVVNLAGANIGEKRWTESRKKHLIESRVNTTQKLYAWLK 99 +D + + ++ + V + + E+ +S + + + Sbjct: 62 ADREGMTDL-----FASGHFERVFISP-HRLAVRYSLENPHA-YADSNLTGFLNILEGCR 114 Query: 100 QSQIFPEVIVSGSAIGYYGIDNQEKWTEVCTEQSSPQPI 138 ++I + S S++ YG++ + ++ + S P+ Sbjct: 115 HNKIQHLLYASSSSV--YGLNRKMPFST---DDSVDHPV 148
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 0.003 Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 43/221 (19%) Query: 647 TQCRAELEQVQKYLAQLQVKQTHLQQELEQAFNLNQLHIELNQAPEQILQTLNELRQAT- 705 A+ + Q L Q +++QT Q IELN+ PE L + + Sbjct: 130 LGAEADTLKTQSSLLQARLEQTRYQILSRS--------IELNKLPELKLPDEPYFQNVSE 181 Query: 706 ---QTAISLFDSENVRLTQAIKQHNQLVQTIQRNESLLNTAQQ----WQQQVQHIVECLS 758 SL + + Q Q + + + T ++ + L Sbjct: 182 EEVLRLTSLIKE---QFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 759 ETEQHAWQQASSQTAKQTWAILDARAKQLELQEQLAQRFEQQQQDLKMLAANLEQMIKQI 818 + +QA ++ A +L+ K +E +L + LEQ+ +I Sbjct: 239 DFSSLLHKQAIAKHA-----VLEQENKYVEAVNELRV-----------YKSQLEQIESEI 282 Query: 819 DEIEQNLQ--------EITLKGQQNNEKAVSLIQQMTGRSD 851 ++ Q EI K +Q + L ++ + Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Score = 33.6 bits (77), Expect = 0.005 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 468 ARQKLSEAKNELEQLTVSLGTVEQIELKLEQQRKDKDQKLAQVT----QLDLIQQKIKIY 523 + L EQ + Q EL L+++R ++ LA++ + + ++ + Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240 Query: 524 HELYAELQQFTEKHTQASAQEDQLKTVCQLAEQDYQTAKTEREKLQHILQQQRLLHTENI 583 L + Q KH + ++ V +L Q + E E L +++ L T+ Sbjct: 241 SSLLHK--QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS--AKEEYQLVTQLF 296 Query: 584 EQ 585 + Sbjct: 297 KN 298 Score = 32.5 bits (74), Expect = 0.011 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 9/159 (5%) Query: 289 QLASEREQLKRLEVFSEIRPQVF-QQAQNLQTLQQLEPQIQQAQTKFNELVQIFETGQKQ 347 Q SE E L+ + E Q+ Q L + + + N + + + Sbjct: 177 QNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSR 236 Query: 348 Y----QLAEQQL---KQTLDFEQQHQQALNQVRQSIQERAFIADEYKKCKEKRQVLEQNL 400 L +Q L+ E ++ +A+N++R + I E KE+ Q++ Q Sbjct: 237 LDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLF 296 Query: 401 SPLQQQQNA-VQQHIAQLEQNKIHLQQQLIQTQQYAVLD 438 + +I L +++ + A + Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVS 335 Score = 31.0 bits (70), Expect = 0.037 Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 37/238 (15%) Query: 487 GTVEQIELKLEQQRKDKDQKLAQVTQLDLIQQKIKI-YHELYAELQQFTEKHTQASAQED 545 V++I +K E + K L ++T L +K L A L+Q + S + + Sbjct: 105 SIVKEIIVK-EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELN 163 Query: 546 QLKTVCQLAEQDYQTAKTE-REKLQHILQQQRLLHTENIEQLRANLKEGEACLVCGSTHH 604 +L + E +Q E +L ++++Q Q NL + A Sbjct: 164 KLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA--------- 214 Query: 605 PYRIDDSAVSKALFDLQQQQEQQAIALEQTKFNAWQT-------QQHALTQCR------- 650 + + + + +E+++ + + + +HA+ + Sbjct: 215 ---------ERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 651 AELEQVQKYLAQLQVKQTHLQQELEQAFNLNQLHI--ELNQAPEQILQTLNELRQATQ 706 EL + L Q++ + ++E + L + I +L Q + I EL + + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 36.7 bits (85), Expect = 5e-05 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 21/220 (9%) Query: 12 LQQIRTACELAQRAPETVQLLAVSKT----HPSERLREMYAAGQRAFGENYLQEALDKID 67 LQ ++ + ++A ++ +V K H ER+ F L+EA+ Sbjct: 11 LQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWS-AIGATDGFALLNLEEAI---- 65 Query: 68 ALQDLDIEWHFI--GHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNICLQ 125 L++ + + + + +Q V + L N R + Sbjct: 66 TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI----Y 121 Query: 126 VNIDGQESKDGCAPEDVAELVAQMSQLPKIRLRGLMV-IPAPDNTAAFADAKKLFDAVKV 184 + ++ ++ G P+ V + Q+ + + LM ++ + A + Sbjct: 122 LKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQA-A 180 Query: 185 QHAHPEDWDTLSMGMSGDLEAAIAAGSTMVRVGTALFGAR 224 + S+ S A VR G L+GA Sbjct: 181 EGLECR----RSLSNSAATLWHPEAHFDWVRPGIILYGAS 216
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.1 bits (109), Expect = 6e-09 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%) Query: 39 CTVIEINNKVVGFCILQPVLDE-ANLLLMAIDPQMQGKGLGYQLLDASIE-RLENHPVQI 96 + + N +G ++ + A + +A+ + KG+G LL +IE ENH + Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 97 FLEVRESNKAAIGLYEKTGFHQIDVRRNYYPTQEGGRENAV 137 LE ++ N +A Y K F V Y E A+ Sbjct: 127 MLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAI 167
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 78.0 bits (192), Expect = 1e-17 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 13 VNVGTIGHVDHGKTTLTAAI--ATICAKTYGGEAKDYSQIDSAPEEKARGITINTSHVEY 70 +N+G + HVD GKTTLT ++ + G K ++ D+ E+ RGITI T + Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 DSPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPMPQTREHILLSRQVGVPY 130 +D PGH D++ + + +DGAIL+ +A DG QTR R++G+P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122 Query: 131 IIVFLNKCDLVDDEELLELVEMEVRELLS 159 I F+NK D + L V +++E LS Sbjct: 123 TIFFINKIDQNGID--LSTVYQDIKEKLS 149
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 596 bits (1538), Expect = 0.0 Identities = 169/686 (24%), Positives = 285/686 (41%), Gaps = 78/686 (11%) Query: 9 RYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAAT 68 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWSGMGNQFPQHRINVIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWR 128 + W ++N+IDTPGH+DF EV RS+ VLDGA ++ A GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 129 QANKYKVPRLAFVNKMDRTGANFFRVVEQMKTRLGANPVPIVVPIGAEDTFTGVVDLIEM 188 K +P + F+NK+D+ G + V + +K +L A V V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK----------QKVELYPNM 164 Query: 189 KAIIWDEASQGMKFEYGEIPADLVDTAQEWRTNMVEAAAEASEELMDKYLEEGDLSKEDI 248 + E+ Q + E +++L++KY+ L ++ Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYMSGKSLEALEL 200 Query: 249 IAGLRARTLASEIQVMLCGSAFKNKGVQRMLDAVIEFLPSPTEVKAIEGILDDKDETKAS 308 R + + GSA N G+ +++ + S T Sbjct: 201 EQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH----------------- 243 Query: 309 REASDEAPFSALAFKIMNDKFVGNLTFVRVYSGVLKQGDAVYNPVKSKRERIGRIVQMHA 368 ++ FKI + L ++R+YSGVL D+V K K +I + Sbjct: 244 ---RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSIN 299 Query: 369 NERQDIDEIRAGDIAACVG----LKDVTTGDTLCDEKNIITLERMEFPDPVIQLAVEPKT 424 E ID+ +G+I L V GDT + ER+E P P++Q VEP Sbjct: 300 GELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR----ERIENPLPLLQTTVEPSK 354 Query: 425 KADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELHLDIIVDRMKREFGVEANIG 484 +E + AL ++ DP R + D + + I++ +G++ +++ ++ ++ VE I Sbjct: 355 PQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIK 414 Query: 485 KPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLDVEAAGKEYEFAEEVVGGVV 544 +P V Y E K E + + + + + PL + G ++ V G + Sbjct: 415 EPTVIYMERPLKKA--EYTIHIEVPPNPFWASIGLSVSPLPL---GSGMQYESSVSLGYL 469 Query: 545 PKEFFGAVDKGIQERMKNGVLAGYPVVGVKAVLFDGSYHDVDSDELSFKMAGSYAFRDGF 604 + F AV +GI+ + G L G+ V K G Y+ S F+M Sbjct: 470 NQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVL 528 Query: 605 MKADPVLLEPIMKVEVETPEDYMGDIMGDLNRRRGMVQGMDDLPGGTKAIKAEVPLAEMF 664 KA LLEP + ++ P++Y+ D + + L + E+P + Sbjct: 529 KKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDT-QLKNNEVILSGEIPARCIQ 587 Query: 665 GYATQMRSMSQGRATYSMEFAKYAET 690 Y + + + GR+ E Y T Sbjct: 588 EYRSDLTFFTNGRSVCLTELKGYHVT 613
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.046 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 26/88 (29%) Query: 619 RFYQVYDPSYYKPEYAIKESWRWLHAIETGLKGKPI----------DWTVLDDVIETIVK 668 RF+ VY P + +P+ A+ +++ A+ L+GK I D+T +DD+ E I++ Sbjct: 177 RFFTVYGP-WGRPDMAL---FKFTKAM---LEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 669 NVPVL---------EAIQDVAPDAGYRV 687 V+ E A A YRV Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRV 257
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 4e-05 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 31/150 (20%) Query: 378 VAVETEALKTQKEIELI--PPPLYVKVDAERRYLHRVV-----QNLVGNAVRYC------ 424 +A E + + ++ I L + + V Q LV N +++ Sbjct: 218 LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQ 277 Query: 425 DNKVRITGGIHNDGMAFVCVEDDGPGIPEQDRKRVFEAFARLDDSRTRASGGYGLGLSIV 484 K+ + G ++G + VE+ G + ++ S G GL ++ Sbjct: 278 GGKILLKG-TKDNGTVTLEVENTGSLALKNTKE----------------STGTGL-QNVR 319 Query: 485 SRIAYWFGGEIKVDESPSLGGARFIMTWPA 514 R+ +G E ++ S G ++ P Sbjct: 320 ERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 6e-22 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 8 PKILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGL 67 IL+ +DD + + + L R G +V + ++ R I + DLVV DV++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 68 TVCREVRPHY-HQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTD 126 + ++ P+L+++A+ M + E GA DY+ KP L+ I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 127 KTVEDEVAQRIEFDDLV 143 + + LV Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 35.4 bits (81), Expect = 0.001 Identities = 65/320 (20%), Positives = 108/320 (33%), Gaps = 26/320 (8%) Query: 159 GNSITLIGDSSSSSVNNSATNTSNTVNDNDTTYNGNGSGAGNGSGDGLLNGIGSGNGEQN 218 GNS T DS+ + + +++ N GSGAG + +L Sbjct: 172 GNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLT--------LQ 223 Query: 219 YGIGNGIADDASITAPITLPINLSGNSITLIGNSSASSVNSSPTTTSNTVNDNDTTYNGN 278 G ++A I+ +NL+ NS+ L+GN + + + + +T+ Sbjct: 224 ASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTS-KVT 282 Query: 279 GTGDSGVSALGDSGNGSGDGAGNGIASGNGEHNYGIGNGNGDDVDITAPITGVLNFSGNS 338 G + +GD + A GI + N H + ++I AP G N Sbjct: 283 GEVNFNHLTVGDH-----NAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPND 337 Query: 339 FTLIGNSSSSSVNTAPTTTSNTVNDNDTIDNGNSGGTGSGSGNGSGDGLLNGAASG---- 394 N++ ++ +S ++ I+ NS DG G + Sbjct: 338 --KPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNI 395 Query: 395 ---NGEHNYGIGNGNGDDVDITAPITGVFNFSGNSFSLIGNSSSSSINTAPTTTTNTVND 451 N + I G T + +L +S S+ T TV D Sbjct: 396 NRINTNADGTIRVGGFKASLTTN--AAHLHIGKGGINLSNQASGRSLLVENLTGNITV-D 452 Query: 452 NDVTVNGNDGGGLLGGSSGN 471 + VN GG L GSS N Sbjct: 453 GPLRVNNQVGGYALAGSSAN 472 Score = 30.8 bits (69), Expect = 0.035 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 9/167 (5%) Query: 29 GSGDGLLNGISSGNGEHNYGIGNGIADDASITAPITIPLNLSGNSITLIGN---SSSNSV 85 GSG G + + + GI + +A I+ LNL+ NS+ L+GN V Sbjct: 208 GSGAGRKASSTVLTLQASEGITSRE--NAEISLYDGATLNLASNSVKLMGNVWMGRLQYV 265 Query: 86 NSSPTTTSNNVNDNDVTNNGNGSTIGSGTGNGSGDGLLNGAASGNGEHNYGIGNGIADDA 145 + + + +N + VT N + + G N + G++ + G + G+ Sbjct: 266 GAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGL---- 321 Query: 146 SITAPLSIPINLAGNSITLIGDSSSSSVNNSATNTSNTVNDNDTTYN 192 +I AP N +++ + ++ +N+ N Sbjct: 322 NIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPN 368
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.7 bits (170), Expect = 6e-17 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 17/187 (9%) Query: 11 RPRQARSVATFEAILEAAARILESLGFAGFNTNAVAELAGVSIGSLYQYFPSKDALIVEL 70 R + + T + IL+ A R+ G + + +A+ AGV+ G++Y +F K L E+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 71 IRRERAKLSNHIVEVIQQSDAADLKDKLKLIIQAAVQHQLSRPQLARTLEFASELIGKDI 130 + + +E + D L+ I+ ++ ++ + +E Sbjct: 63 WELSESNIGELELEYQAK-FPGDPLSVLREILIHVLESTVTEERRRLLMEI-------IF 114 Query: 131 EESEHQHELETIISDLFKRSGVSHAQTAAQDVIALSKGMINAAGIVGESDLNHLQQRVEK 190 + E E+ + + + + + + + +R Sbjct: 115 HKCEFVGEMAVVQ---------QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165 Query: 191 AVFGYLD 197 + GY+ Sbjct: 166 IMRGYIS 172
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.4 bits (120), Expect = 6e-10 Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 42 SSKKLQVVQTAIQLFTTHGFHNAGVDLIIKEAKIPKATFYNYFHSKERLIEMCIAFQKSL 101 + ++ A++LF+ G + + I K A + + Y +F K L +S Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 102 LKE 104 + E Sbjct: 70 IGE 72
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 25.9 bits (56), Expect = 0.045 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 10/69 (14%) Query: 37 SGSTHYTTTPPPQGAKHLNKVSTYGSQPLLKNPTSNSEQSSQDKDKVVQEVTNVTVEKGA 96 +G T A L T S P +NP+S + + V V +GA Sbjct: 395 TGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPSSTTPVVPK----------PVPVYEGA 444 Query: 97 PAVPVPPAP 105 PV P Sbjct: 445 TLTPVKATP 453
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 1e-06 Identities = 21/167 (12%), Positives = 55/167 (32%), Gaps = 10/167 (5%) Query: 44 GDIENNVLATGTL-DATKLISVGAQVSGQVKKMYVQLGDQVKQGQLIAQIDSTTQENSLK 102 G +E A G L + + + + VK++ V+ G+ V++G ++ ++ + Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL------- 130 Query: 103 TSDANIKNLEAQRLQQIASLNEKQLEYRRQQQMYAQDATPRADLESAEAAYKTAQAQVKA 162 ++A+ ++ LQ Q+ R + + + + + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 163 LDAQIESAKITRSTAQTNIGYTRIVAPTDGTVVAIVTEEGQTVNANQ 209 + Q + + Q + + A + I E + Sbjct: 191 IKEQFSTWQ--NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Score = 42.1 bits (99), Expect = 3e-06 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 21/159 (13%) Query: 87 QLIAQIDSTTQENSLKTSDANIKNLEAQRLQQIASLNEKQLEYRRQQQMYAQDATPRADL 146 Q IA+ QEN + ++ ++Q Q + + + EY+ Q++ + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL----- 301 Query: 147 ESAEAAYKTAQAQVKALDAQIESAKITRSTAQTNIGYTRIVAPTDGTVVAI-VTEEGQTV 205 + + L ++ + + I AP V + V EG V Sbjct: 302 ----DKLRQTTDNIGLLTLELAKNEE-------RQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 206 NANQSAPTIVKIAKLQN-MTIKAQVSEADIMKVEKGQQV 243 + T++ I + + + A V DI + GQ Sbjct: 351 TTAE---TLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 7e-13 Identities = 66/263 (25%), Positives = 98/263 (37%), Gaps = 27/263 (10%) Query: 16 LAGKRFLIAGVASKLSIAYGIAQALHREGAEL-AFTYPNEKLKKRVDEFAEQFGSKLVFP 74 + GK I G A I +A+ L +GA + A Y EKL+K V + FP Sbjct: 6 IEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 75 CDVAVDAEIDNAFAELAKHWDGVDGVVHSIGF---APAHTLDGDFTDVTDRDGFKIAHDI 131 DV A ID A + + +D +V+ G H+L +D + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSL-------SDEEWEATFSVN 116 Query: 132 SAYSFVAMARAAKPLLQARQGCLLTLTYQGSERVMPNYNVMGMAKASLEAGVRYLASSLG 191 S F A +K ++ R G ++T+ + + +KA+ + L L Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 192 VDGIRVNAISAGPIRTL-----------AASGIKSFRKMLDANEKVAPLKRNVTIEEVGN 240 IR N +S G T A IK + PLK+ ++ + Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG---IPLKKLAKPSDIAD 233 Query: 241 AALFLCSPWASGITGEILYVDAG 263 A LFL S A IT L VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.007 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 GAIQKSVMLTIIAAAVGVALFFYAAFTANVGIAYAASIVGAIGGLVLALIT 75 GAI S+ + L A+ ++ + A S+VGA ++ +T Sbjct: 362 GAIDASL------TTISTVL---ASVSSGISAAATTSLVGAPVSALVGAVT 403
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 155 bits (393), Expect = 3e-51 Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 3/147 (2%) Query: 3 EEQQVQPQLALERIYTKDISFEVPGA-QVFTKQWQPELNINLSSAAEKIDPTHFEVSLKV 61 + QP L ++RIY KD+SFE P +F + W+P+L+ +LS+ A+++ +EV L + Sbjct: 12 TQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNI 71 Query: 62 VVQANNDNE--TAFIVDVTQSGIFLIDNIEEDRLPYILGAYCPNILFPFLREAVNDLVTK 119 V+ ++ AFI +V Q+G+F I +EE ++ + L + CPN+LFP+ RE V+ LV + Sbjct: 72 SVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVNR 131 Query: 120 GSFPQLLLTPINFDAEFEANMQRAQAA 146 G+FP L L+P+NFDA F +QR + A Sbjct: 132 GTFPALNLSPVNFDALFMDYLQRQEQA 158
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 26.4 bits (58), Expect = 0.034 Identities = 6/28 (21%), Positives = 12/28 (42%) Query: 3 KKIGLISTVILSTVMFTGCQNMSPSDQR 30 KK+G + + LS ++ C + Sbjct: 2 KKLGTLLVLFLSAIILVACASGKKDTTS 29
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 60.2 bits (146), Expect = 7e-12 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 9/127 (7%) Query: 16 TILVTGAAGFIGSRLIVELLREGHQVIAALRNAATKKDKLLGFIATQGLADPSISFVEYD 75 LVTGAAGFIG + LL GHQV+ + N D L + LA P F + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVV-GIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 76 LSRDFKLDSLLSDAQTKIHVIYHLAA----SFNWGISKAEAERTNIKSGLALIEWAATLK 131 L+ + L + ++ ++ A A+ +N+ L ++E Sbjct: 61 LADREGMTDLFASGH--FERVFISPHRLAVRYSLENPHAYAD-SNLTGFLNILE-GCRHN 116 Query: 132 QLERFIW 138 +++ ++ Sbjct: 117 KIQHLLY 123
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 85.3 bits (211), Expect = 1e-18 Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 15/233 (6%) Query: 725 QRYAKITILLKTGSN-----HRIKEILESLKTYMAGQLGDKAVVSFGGDVTQTIALTETM 779 + A + I L TG+N IK L L+ + G K + + D T + + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ--GMKVLYPY--DTTPFV---QLS 336 Query: 780 VHGKLMNILQISFAVFFISALVFRSISAGLIVLTPLLFSILAIFGVMGWLDIPLNIPNSL 839 +H + + + VF + L +++ A LI + +L F ++ +N Sbjct: 337 IHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF 396 Query: 840 ISAMAVGIGADYAIYFLYRLREILREEGGDIKDAIRKTLSTAGKASLFVATAVAGGYGVL 899 +A+G+ D AI + + ++ E+ K+A K++S A + +A ++ + + Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 900 SLSQG--FHVHQWLAMFIVIAMLFSVFTTLIMVPTM-ILILKPRFIFSSKKKS 949 + G +++ ++ IV AM SV LI+ P + +LKP + K Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKG 509 Score = 61.8 bits (150), Expect = 1e-11 Identities = 27/156 (17%), Positives = 63/156 (40%), Gaps = 10/156 (6%) Query: 792 FAVFFISALVFRSISAGLIVLTPLLFSILAIFGVMGWLDIPLNIPNSLISAMAVGIGADY 851 VF A ++ S S + V+ + I+ + + ++ + +G+ A Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 852 AIYFLYRLREILREEGGDIKDAIRKTLSTAGKASL--FVATAVAGGYGVL----SLSQGF 905 AI + ++++ +EG + +A A + L + T++A GVL S G Sbjct: 941 AILIVEFAKDLMEKEGKGVVEATLM----AVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 906 HVHQWLAMFIVIAMLFSVFTTLIMVPTMILILKPRF 941 + + ++ M+ + + VP ++++ F Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCF 1032 Score = 41.0 bits (96), Expect = 4e-05 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 30/223 (13%) Query: 394 VLVIGLLHFEAFRSKQGLILPLVTALLAVAWGMGMMGLFKQPMDIFNSPTPILILAIAAG 453 V ++ L + R+ + + LL + G + +F ++LAI Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG-----MVLAIGLL 405 Query: 454 --HAVQLLKRYYEDFDRLIAQGMEPKAANSEAVVQSLVRVGPVMVLAGGIAAAGFFSLLT 511 A+ +++ ++ + PK EA +S+ ++ +V + +A F + Sbjct: 406 VDDAIVVVENVE---RVMMEDKLPPK----EATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 512 FNIPT---IRSFGIFTGIGIISTLVIEMTFIPALRSML--PPPSVVKVKRKGLPIW---- 562 F T R F I + ++++ + PAL + L P + + G W Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTT 518 Query: 563 -DWIPNRIGDV---ILSVRPRMMLMTAIAAMG---IFLAIGTS 598 D N + IL R +L+ A+ G +FL + +S Sbjct: 519 FDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSS 561 Score = 36.4 bits (84), Expect = 0.001 Identities = 32/204 (15%), Positives = 74/204 (36%), Gaps = 26/204 (12%) Query: 350 MGPINKIVESEQSK---DMTISVGGNPVYLDKAEDYSKRINILFPIAVLVIGLLHFEAFR 406 G ++E+ SK + G + + L I+ +V+ L + Sbjct: 836 SGDAMALMENLASKLPAGIGYDWTGMSYQERLSG---NQAPALVAISFVVVFLCLAALYE 892 Query: 407 SKQGLILPLVTALLAVAWGMGMMGLFKQPMDIFNSPTPILILAIAAGHAVQLLKRYYEDF 466 S + ++ L + + LF Q D++ + + ++A +A+ ++ +F Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV-----EF 947 Query: 467 --DRLIAQGMEPKAANSEAVVQSLVRVGPVMVLAGGIAAAGFFSLLTFNIPTIRSFGIFT 524 D + +G A A +R+ P+++ + A +L I G Sbjct: 948 AKDLMEKEGKGVVEATLMA---VRMRLRPILM----TSLAFILGVLPLAISNGAGSGAQN 1000 Query: 525 GI------GIISTLVIEMTFIPAL 542 + G++S ++ + F+P Sbjct: 1001 AVGIGVMGGMVSATLLAIFFVPVF 1024
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 26.9 bits (59), Expect = 0.008 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 12 IRTLVAKEMRVEPETIDPDQKFTSYGLDSIVALSVSGDLEDLTKL--ELEPTLLWDYPTI 69 IR +A+ ++ PE I + GLDS+ +++ +E + E+ L + PTI Sbjct: 235 IRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTL---VEQWRREGAEVTFVELAERPTI 291 Query: 70 NALAEYLVSELQQ 82 + L + QQ Sbjct: 292 EEWQKLLTTRSQQ 304
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 124 bits (314), Expect = 3e-38 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 5/156 (3%) Query: 14 NNFSEGLYTKFKSYRYRVFVEYLGWELNCPNDEELDQFDKIDTAYVVAQDRESNIIGCAR 73 SE + + R F + L W + C + E DQ+D +T Y+ ++ +I R Sbjct: 10 TLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIK-DNTVICSLR 68 Query: 74 LLPTTQPYLLGAIFPQLLNGMPIPCSPEIWELSRFSAVDFSNPPSSSSQAVSSPVSIAIL 133 + T P ++ F + IP E SRF VD S P+S + Sbjct: 69 FIETKYPNMITGTFFPYFKEINIPEGN-YLESSRF-FVDKSRAKDILGNE--YPISSMLF 124 Query: 134 QEAINFAREQGAKQLITTSPLGVERLLRAAGFRAHR 169 IN+++++G + T + +L+ +G+ Sbjct: 125 LSMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRV 160
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.045 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 20/121 (16%) Query: 75 LGGLVFGHFGDKIGRKSMLLLTLMLMGIPTVLIGLLPTYESIGYWAAIGLVILRFIQGMA 134 +G V+G D++G K +LL +++ +V+ + ++ S+ L++ RFIQG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQG-- 114 Query: 135 MGGEWGGAVLMAV------EHAPEGGKGFWGSLPQASTG-----GGLMLASIALGLVSLL 183 G A++M V + G GS+ G GG++ I + L+ Sbjct: 115 AGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174 Query: 184 P 184 P Sbjct: 175 P 175
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 38.9 bits (90), Expect = 8e-06 Identities = 27/77 (35%), Positives = 36/77 (46%) Query: 4 NIIIFGYGTGISQAVAHKFGKEGYKIGLVARNAQKLEKAILELKAQGIEAYAFACDLAVL 63 I G GI +AVA +G I V N +KLEK + LKA+ A AF D+ Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 64 EDIPNLIKRIKDRLGEI 80 I + RI+ +G I Sbjct: 70 AAIDEITARIEREMGPI 86
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 26.6 bits (58), Expect = 0.030 Identities = 10/56 (17%), Positives = 19/56 (33%) Query: 3 YTWDEFEQRLITYRDAWIDLARILDAYEHQIKELLQQIQLLTYEDSLPVFNQLYEI 58 Y + Y + +D Y +++ L L +++ V N LY Sbjct: 269 YYTNSVIYNTKGYDAKNTEFYNRIDPYMERLESLCTIGDKLNNDNAWLVNNALYYT 324
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 32.8 bits (74), Expect = 0.002 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 232 LALYPLSAFRAMNK----AAETVYETLRKEGTQKNVVDIMQTRKEL 273 L LY F MNK E + E+L+KEG +K+ +D+++ K L Sbjct: 257 LELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKAL 302
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 179 bits (455), Expect = 8e-56 Identities = 85/348 (24%), Positives = 144/348 (41%), Gaps = 35/348 (10%) Query: 3 KILVTGGAGYIGSHTCVELLEAGHEVIVFDNLSNSSKESLN--RVQEITQKGLTFVEGDI 60 K LVTG AG+IG H LLEAGH+V+ DNL++ SL R++ + Q G F + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 61 RNSGELDRVFQEHAIDAVIHFAGLKAVGESQEKPLIYFDNNIAGSIQLVKSMEKAGVYTL 120 + + +F + V AV S E P Y D+N+ G + +++ + L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 121 VFSSSATVYDEANTSPLNEEMPTGMPSNNYGYTKLIVEQLLQKLSVADSKWSIALLRYFN 180 +++SS++VY P + + P + Y TK E + S LR+F Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS-HLYGLPATGLRFFT 180 Query: 181 PVGAHKSGRIGEDPQGIPNNLMPYVTQVAVGRREKLSIYGNDYDTIDGTGVRDYIHVVDL 240 G P G P+ + T+ A+ + + +Y G RD+ ++ D+ Sbjct: 181 VYG----------PWGRPDMALFKFTK-AMLEGKSIDVYN------YGKMKRDFTYIDDI 223 Query: 241 ANAHLCALNNRLQAQGC---------------RAWNIGTGNGSSVLQVKNTFEQVNGVPV 285 A A + + A R +NIG + ++ E G+ Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283 Query: 286 AFEFAPRRAGDVATSFADNARAVAELGWKPQYGLEDMLKDSWNWQKQN 333 P + GDV + AD +G+ P+ ++D +K+ NW + Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.5 bits (68), Expect = 0.019 Identities = 10/24 (41%), Positives = 20/24 (83%) Query: 104 LRLPSEYSKFPELTKQVHTQLQRM 127 +RL S+YS+FPE+ + + +Q++R+ Sbjct: 152 MRLMSDYSRFPEVKELMESQMERL 175
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 32.0 bits (72), Expect = 0.004 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 8/132 (6%) Query: 80 ETMLPRFLDILSNHKNLNPEY-----IYNDEINKYLEVVARDNCLGVIALSKSAKKIQSD 134 ET+L R D LS ++ + E+ +Y ++I + L + + V K K SD Sbjct: 425 ETLLSR--DYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKPALSD 482 Query: 135 ILKAYPKVRDKIEKKMFVLYPPQKIYTTQHEIEEKVLKPLKLIFVGNDFYLKGGAECILA 194 +LK Y + + I K F+ P K + + + K K +G+ + KG AE + Sbjct: 483 VLKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFP 542 Query: 195 INELLE-EGIIS 205 N L+ E I++ Sbjct: 543 PNTKLKIESIVN 554
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.3 bits (60), Expect = 0.007 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Query: 3 RSQRRGRDPPCWLSEKEPLVGKRRVNFQRCWLPVSRIGLHRRGVERVNCGPKLLDLGEKG 62 RSQR G + W +P R + F P SR + G + +C +LLD G G Sbjct: 197 RSQRDGSEAWKWRGWDDP----RPLYFPSHRAPESRTVVLVEGERKADCLQQLLDAGAPG 252 Query: 63 VY 64 VY Sbjct: 253 VY 254
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.017 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 283 GLVSGGGIGAAGGIGNFGAGAAVGAAVTAASMATGGAALAGKAVMGAAAGAAGGASALQA 342 G SG G G G G+G + AA +A G AL+ G A + G AL A Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG--ALSA 114 Query: 343 AFQKASASME 352 A A+++ Sbjct: 115 AIADIMAALK 124
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 28.1 bits (62), Expect = 0.018 Identities = 8/17 (47%), Positives = 12/17 (70%) Query: 135 WVIDPERAIQKLHEMKE 151 WV DP RA+ +H+M+ Sbjct: 24 WVPDPNRAVLLIHDMQN 40
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 28.0 bits (62), Expect = 0.017 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 3 EIIQPNEEIRITDGSKVDLHFSVAIENGVEIDNTRSREEPVSLTIGDGNLLPGFEKALLG 62 +II + V + ++ + +G D+T +P + + ++PG+ +AL Sbjct: 131 KIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVS--QVIPGWTEALQL 188 Query: 63 LRAGDRRTVHLPPEDAFGP 81 + AG V +P + A+GP Sbjct: 189 MPAGSTWEVFVPADLAYGP 207
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.036 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 18/73 (24%) Query: 84 AIRQKPTDIELVEDI------------RLPLQSGTIFARHYHPA------PNKKLPLIVF 125 IR L+EDI L +A+ H + + F Sbjct: 81 KIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHF 140 Query: 126 YHGGGFVVGGLDT 138 Y F++G +DT Sbjct: 141 YAKHHFIIGAVDT 153
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 141 bits (358), Expect = 2e-39 Identities = 79/380 (20%), Positives = 141/380 (37%), Gaps = 69/380 (18%) Query: 5 IGIDLGTTNSCVAVLEGDKVKVIENAEGARTTPSIIAYKDGEILVGQSAKRQAVTNPKNT 64 + IDLGT N+ + V V + R + VG AK+ P N Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRA--GSPKSVAAVGHDAKQMLGRTPGN- 69 Query: 65 LFAIKRLIGRRYEDQAVQKDIGLVPYKIIKADNGDAWVEVNDKKLAPQQISAEILKK-MK 123 + AI+ P K D +A ++ ++L+ +K Sbjct: 70 IAAIR-------------------PMK--------------DGVIADFFVTEKMLQHFIK 96 Query: 124 KTAEDYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAFGMDKK 183 + + ++ VP +R+A +++ + AG +I EP AAA+ G+ Sbjct: 97 QVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVS 156 Query: 184 EGDRKVAVYDLGGGTFDVSIIEIADLDGDQQIEVLSTNGDTFLGGEDFDNALIEYLVEEF 243 E V D+GGGT +V++I + + + +GG+ FD A+I Y+ + Sbjct: 157 E-ATGSMVVDIGGGTTEVAVISLNG---------VVYSSSVRIGGDRFDEAIINYVRRNY 206 Query: 244 KKEQNVNLKNDPLALQRLKEAAEKAKIELSSS----NATEINLPYITADATGPKHLVINV 299 + AE+ K E+ S+ EI + P+ +N Sbjct: 207 G-------------SLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN- 252 Query: 300 TRAKLEGLVADLVARTIEPCKIALKD-AGLSTSDISD--VILVGGQSRMPLVQQKVQEFF 356 + LE L + + + +AL+ SDIS+ ++L GG + + + + + E Sbjct: 253 SNEILEALQ-EPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEET 311 Query: 357 GREPRKDVNPDEAVAIGAAI 376 G +P VA G Sbjct: 312 GIPVVVAEDPLTCVARGGGK 331
>cloacin#Cloacin signature. Length = 551 Score = 33.5 bits (76), Expect = 0.001 Identities = 14/32 (43%), Positives = 16/32 (50%) Query: 326 SGAGGGGRGGGFGGGGGGYGGGGGRFGGGGAS 357 SG GG G GGG G GGG GG ++ Sbjct: 52 SGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 33.5 bits (76), Expect = 0.001 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 330 GGGRGGGFG-GGGGGYGGGGGRFGGGGASGS 359 GGG G G GGG G+G GGG GG SG+ Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77 Score = 33.1 bits (75), Expect = 0.001 Identities = 15/34 (44%), Positives = 17/34 (50%) Query: 326 SGAGGGGRGGGFGGGGGGYGGGGGRFGGGGASGS 359 SG+G GG G GGG G GG G GG + Sbjct: 50 SGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Score = 33.1 bits (75), Expect = 0.002 Identities = 14/31 (45%), Positives = 16/31 (51%) Query: 329 GGGGRGGGFGGGGGGYGGGGGRFGGGGASGS 359 GG G G +GGG G GGG GGG+ Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Score = 33.1 bits (75), Expect = 0.002 Identities = 15/32 (46%), Positives = 16/32 (50%) Query: 327 GAGGGGRGGGFGGGGGGYGGGGGRFGGGGASG 358 G G G GG G G GGG G GGG +G Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTG 78 Score = 30.8 bits (69), Expect = 0.008 Identities = 14/33 (42%), Positives = 15/33 (45%) Query: 327 GAGGGGRGGGFGGGGGGYGGGGGRFGGGGASGS 359 G G G G G G G GG G GG G G+ Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.0 bits (114), Expect = 6e-10 Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 1 MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQASEAFTLADGLKTTIN 54 + Q+GFTL+E+M+V+ IIG+LA++ +P K+ +A + L+ ++ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALD 57
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 29.5 bits (66), Expect = 0.022 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query: 12 AIYLITAILGYQTGWS-IFQYDELRLLQFPLALYALLILIFAKKLKFSIYSQITFFIIAG 70 I ++ A LGY S ++ + L A +++ A + I+ Q T I Sbjct: 131 GIGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQ-TLVITPI 189 Query: 71 LILTQQINWEIFEFQELWSVIALLFIFSALTYELRNIKNI--EHGIALIVVTAIIPCLFI 128 L L+ +F +L V F L++ + I+ I H + + C++I Sbjct: 190 LFLSGA----VFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYI 245 Query: 129 LISIF 133 +I F Sbjct: 246 VIPFF 250
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 30.6 bits (69), Expect = 0.002 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 10/94 (10%) Query: 44 EYKESIRQMKHADKIIERILFLEGLPN--LQHLGKLY------IGQHTEEVLQCDIRKVK 95 E + + D I ER+L + G P ++ + E++Q + K Sbjct: 52 ELYDHAA--ETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYK 109 Query: 96 ENIEAIQKAVALAETEQDYVTRDLVQEILEKEEE 129 + + + LAE QD T DL ++E+ E+ Sbjct: 110 QISSESKFVIGLAEENQDNATADLFVGLIEEVEK 143
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 40.6 bits (95), Expect = 4e-07 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 1 MRGIIPQEGFTLVELMVTIAVMAIIALMAAPS-MSNLLESKR 41 MR Q GFTL+E+MV I ++ ++A + P+ M N ++ + Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADK 42
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.3 bits (76), Expect = 5e-04 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 7 SNKEQGFTLIELIVALA-LGLILVAAATQLFIGGLLSSRLQKANAEIQ 53 ++K++GFTL+E++V + +G++ L G + QKA ++I Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLM-GNKEKADKQKAVSDIV 50
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 57.2 bits (138), Expect = 3e-13 Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 11 QGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTY 69 +G TL+E+MVVIVI+ + AS+ +P+ +A A S+I+ L L+ +K N Y Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 53.7 bits (129), Expect = 4e-12 Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 2 KNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRY 61 + GFTL+EIM+V+ II +LA++ P+ + K + S+++ + L+ K+ ++ Y Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66 Query: 62 SSN 64 + Sbjct: 67 PTT 69
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 785 bits (2029), Expect = 0.0 Identities = 284/1037 (27%), Positives = 496/1037 (47%), Gaps = 34/1037 (3%) Query: 5 RISVKYPVFTIMMMLSLMVLGLASWKRMTVEEFPNIDFPFVVVTTQYAGASPEAVESDIT 64 ++ P+F ++ + LM+ G + ++ V ++P I P V V+ Y GA + V+ +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 KKLEDQINTISGIKQITSRS-SEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEI 123 + +E +N I + ++S S S G + F T IA V++K+ E+ Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 DTPIVQRYDPSSSPIMSVVFESNSMSLAQ--LSSYVDKKIVPQLKTVSGVGNVNLLGDAK 181 + SSS +M F S++ Q +S YV + L ++GVG+V L G A+ Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQ 181 Query: 182 RQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTL------QQKNSELVVQIQSKVI 235 +RI + + L Y + VIN LK +N ++ AG L + + Q++ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 HPLGFGDLVI-ANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIQ 294 +P FG + + N +GS + LK VA VE A NG+ A + I ++ AN + Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 VVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGAVLAVLIVLLFLGS 354 L +L+ P G+ D++ ++ SI +VV+T+ E +L L++ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 FRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVVRENIVRH-T 413 R+T+I + +P+ LLGT + AFG+SIN +T+ + L+IGLL+DDAIVV EN+ R Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 414 ELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLIS 473 E A +I A++ + + AVF+P+AF GG G + QF +T+ +A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 MFISFTLDPMLSAHWKDPIKKKESRLQR-FFNYISNLLDGLTHIYEKLLKLALRFRFITV 532 + ++ L P L A P+ + + FF + + D + Y + L + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 533 IIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQVDQII--RQ 590 +I + + + L + + F+P D+G + P ++ E TQ L QV + Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 591 FPDVVSTYGVVNSEVDSGKNHAGLG-VTLKPKQERSADLTTLNNEFRDRLQSVAGIRVTS 649 +V S + V +AG+ V+LKP +ER+ D + + IR Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 650 VAAAQDS------VSGGQKPIMISIKGSDLNELQKISDRFMAEMEK-IDGVVDLESSLKE 702 V + G +I G + L + ++ + + +V + + E Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 703 PKPTLGVHINRVLASDLDLSVSQIANAIRPLIAGDNVTTWEDRDGETYDVNIRLNENKRV 762 + +++ A L +S+S I I + G V + D G + ++ + R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFRM 780 Query: 763 LPQDVQNLYLNSNKTNANGQNILVPLSAVATTQEKLGASQINRRDLEREVLIEAN-TSGR 821 LP+DV LY+ +ANG+ +VP SA T+ G+ ++ R + + I+ G Sbjct: 781 LPEDVDKLYV----RSANGE--MVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGT 834 Query: 822 PSGDIGQDIDKMQKAFKLPAGYTFDTQGANADMAESAGYALTAITLSIVFIYIVLGSQFN 881 SGD ++ + KLPAG +D G + S A + +S V +++ L + + Sbjct: 835 SSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 882 SFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGIIMLMGLVTKNAILLIDFIKKAM 941 S+ P ++M +PL ++GV LA LF +++ ++G++ +GL KNAIL+++F K M Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLM 952 Query: 942 E-DGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLALGLGEGGEQSAPMAHAVIGGVIT 1000 E +G +A L A + RLRPILMT+ A ++G++PLA+ G G + V+GG+++ Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVS 1012 Query: 1001 STLLTLVVVPVIFTYLD 1017 +TLL + VPV F + Sbjct: 1013 ATLLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 5e-07 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 49/217 (22%) Query: 102 RLNNQDNAARLAQAQANLASAQAQAELARNLMNRKQRLLNQGFIARVEF---EQSQVDYK 158 LN A A + + + + ++ ++ LL++ IA+ E V+ Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 159 GQLESVRAQ-------------------------------QANVDIA------KKADRDG 181 +L ++Q Q +I K + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 182 ---IITSPISGVITKRQV-EPGQTVSVGQTLFEIV-NPDQLEIQAKLPIEQQSALKVGSS 236 +I +P+S + + +V G V+ +TL IV D LE+ A + + + VG + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQN 385 Query: 237 IQYQI----QGNSKQLHAILTRISPVADQDSRQIEFF 269 ++ L + I+ A +D R F Sbjct: 386 AIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVF 422 Score = 37.1 bits (86), Expect = 9e-05 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 10/120 (8%) Query: 75 IQAQVSATATAVTANVGQKVQKGQVLVRLNNQDNAARLAQAQANLASAQAQAELARNLMN 134 I+ ++ + G+ V+KG VL++L A + Q++L A+ + + L Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 135 --RKQRLLNQGFIARVEFEQS--------QVDYKGQLESVRAQQANVDIAKKADRDGIIT 184 +L F+ K Q + + Q+ ++ R +T Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 2e-20 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 9 KVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQ 68 ++V DD IR L R G +V + IA + D+V D++MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 TCALIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVS 126 IK + ++PV+++S+++ K G+ +YL KPF EL+ I ++ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 4e-22 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 2 ARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGF 61 A IL+ DD + L++ GYDV SN A A DLV+ DVVMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFL 119 +I + +PV+++S ++ + +GA DYL KP + +LI +I + L Sbjct: 64 DLLPRI-KKAR-PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.4 bits (68), Expect = 0.025 Identities = 22/228 (9%), Positives = 63/228 (27%), Gaps = 10/228 (4%) Query: 451 STAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIREQIQETSKRI 510 + + + Q S NA++ +AQ +N +++ + + Q + Sbjct: 50 ANRFTSNIKGLTQASRNANDGISIAQ----TTEGALNEINNNLQRVRELSVQATNGTNSD 105 Query: 511 KRLGESSQEIGNIVSLINDIADQT-----NILALNAAIQASMAGEAGRGFAVVADEVQRL 565 L EI + I+ +++QT +L+ + ++ + G + ++ Sbjct: 106 SDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVK 165 Query: 566 AERSASATKQIETLV-KTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGD 624 + + + V + + + D D Sbjct: 166 SLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPD 225 Query: 625 LAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVS 672 + A+ + + + + T + A + Sbjct: 226 KVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGK 273
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 1e-19 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 1382 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEV 1441 I++ DD +R V ++ L R GYDV + + DL++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1442 LNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVASE 1501 L ++ +P+++++++ +A G Y+ KPF EL+ I L + Sbjct: 66 LPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 1502 SEVK 1505 Sbjct: 124 RRPS 127
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 36.1 bits (83), Expect = 3e-04 Identities = 15/41 (36%), Positives = 18/41 (43%) Query: 51 VQEQRQVQQQQQQVQQQQQVQLAEVKAQPQPVAAPVSPLAG 91 + + Q QQ Q Q Q Q A+ AQ AA V L G Sbjct: 330 IHLNFVMPPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNG 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%) Query: 2 TKILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGM 61 IL+ +DD I L ++V +N +A DL++ D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QVLKQIRQRAA-TPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARI-HALLRRS 119 +L +I++ PVL++SA++ + GA DYL KP++ EL+ I AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 GVEAQLASQDQ 130 ++L Q Sbjct: 124 RRPSKLEDDSQ 134
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 28.8 bits (64), Expect = 0.026 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 23/102 (22%) Query: 153 LPFAIFALAAIIRRGLKPIDDFKNELKE-------RDS---------EELTPIEVHDYPQ 196 LP A+ +A IR +NEL + +DS LTP E+ Sbjct: 25 LPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTP-ELKASMD 83 Query: 197 ELLPTIDEMNRLFERISKAQNEQKQFIADAAHELRTPVTALN 238 EL + M +R A + +K +D AH + PV N Sbjct: 84 ELRQAAESM----KRSYVANDPEKA--SDEAHTIHNPVVKDN 119
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.004 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 101 GGIAERAKMRSQAIATLALVALVYP---FFEGMVWNGNYGLQKWLETTFGAAFHDFAGSV 157 G A+ QAI A + V+P + + W+ L+KWL G D+ Sbjct: 510 GTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRR 569 Query: 158 V--VHAMGGWIALAAV 171 + + +G +I + V Sbjct: 570 LRYLQLVGKYILMGHV 585
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 336 bits (863), Expect = e-118 Identities = 133/302 (44%), Positives = 190/302 (62%), Gaps = 19/302 (6%) Query: 1 MAISKISTYLMPERESYPNNKTDWQLDPSRAVLLIHDMQRYFLNFYDAESELIKTVVNHL 60 MAI I Y MP P NK W DP+RAVLLIHDMQ YF++ + A + + + ++ Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 VQLRSWAHQNNVPVVYTAQPYEQPAEDRALLNAMWGPGLPASTIDQQKIIDQLSPAEHDI 120 +L++ Q +PVVYTAQP Q +DRALL WGPGL + ++ KII +L+P + D+ Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEE-KIITELAPEDDDL 119 Query: 121 VLTKWRYSAFKRSDLLERMQNWNRDQLIIGGVYAHIGCMVTAIEAFMSDIQPFLVGDAVA 180 VLTKWRYSAFKR++LLE M+ RDQLII G+YAHIGC+VTA EAFM DI+ F VGDAVA Sbjct: 120 VLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVA 179 Query: 181 DFSEEEHRLALKYVSSRCGQVVDTESVVRQV----------------ATGITRPWLEQKV 224 DFS E+H++AL+Y + RC V T+S++ Q+ T + +++ Sbjct: 180 DFSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQI 239 Query: 225 QQLIEE--DELDPEENLILYGLDSLRIMQFSSELKAQGINISFEELGRTPTLSNWWSLVD 282 +L++E +++ +E+L+ GLDS+RIM + + +G ++F EL PT+ W L+ Sbjct: 240 AELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLT 299 Query: 283 AR 284 R Sbjct: 300 TR 301
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 28.9 bits (64), Expect = 0.047 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 8/70 (11%) Query: 282 AAIRSQTNLQRRQRIQHCLKMAQYAVDRFQVVGI---PAWRNPNSI--TVVFPCPSEHIW 336 +++ + + + + +VV NP+ I V++ P E+ Sbjct: 401 FVVKAGDKVTEEKIKRLYWASKEVKAQFMRVVQNDKALEEGNPDDILTVVIYNSPEEY-- 458 Query: 337 KKHYLATSGN 346 K +G Sbjct: 459 -KLNRIINGF 467
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.005 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 347 MTAITGPSGVGKTTLLRALAGLAVLQEGVVQLA--KTDILQLHEKLRHE 393 + G G+GK+TL+ L GL + + K Q+ + +E Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYE 646
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 76.6 bits (188), Expect = 5e-19 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 68 RQLEFLTGRLAAKYALQSFNLQDSIVYQGRHGEPLWPEGVMGGISHVGSKKSCYAIAYAR 127 R+ E L GR+AA +AL+ ++ ++ G +PLWP+G+ G ISH + A+A Sbjct: 46 RKAEHLAGRIAAVHALREVGVR-TVPGMGDKRQPLWPDGLFGSISHCAT----TALAVIS 100 Query: 128 NNTPKEKIFGIDIESQKHYIFFQKKDEFYDVFLNKNEQEEIEKLLKDQAYLYLIIFSAKE 187 GIDIE E ++ +E++ ++ L + FSAKE Sbjct: 101 RQR-----IGIDIEKIMSQ---HTATELAPSIIDSDERQILQASLLPFPLALTLAFSAKE 152 Query: 188 SIIKAFYLKYKQIIDFKNIKFKALDGAFLYFYLR---QESLIEITLEVKVYFFHTNNEII 244 S+ KAF + + F + K +L + +L ++ E T+ + +F +N +I Sbjct: 153 SVYKAFSDR-VTLPGFNSAKVTSLTATHISLHLLPAFAATMAERTVRTE--WFQRDNSVI 209 Query: 245 TI 246 T+ Sbjct: 210 TL 211
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 27.8 bits (61), Expect = 0.011 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%) Query: 9 MTAGMATAGVVVANTPVNQ-AAIAPATVTTVKQALASKD-NTPVKLH-GQVVKSLGDEKY 65 M + T+GV+++ N A + V T +Q+ NTP++ + S GD + Sbjct: 1 MNKWLITSGVMLSLLSANSYAVMGKRYVATPQQSQWEMVVNTPLECQLVHPIPSFGDAVF 60 Query: 66 QFRDKSGNITIDVDDELWQGRPVSANKNVTLI 97 R + I++D EL RP+ +NV+LI Sbjct: 61 SSR---ASKKINLDFELKMRRPMGETRNVSLI 89
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 1e-22 Identities = 32/130 (24%), Positives = 55/130 (42%) Query: 2 RILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEK 61 IL+A+DD + + L GY V I D D ++ D +P Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQTL 121 +L I+ + ++PV+ ++A+++ ++ + GA DYL KPF L EL I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 SQQSILTWGD 131 + Sbjct: 125 RPSKLEDDSQ 134
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.013 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 20/99 (20%) Query: 351 LFDNAIRY----SPALGAIHVELSQYQQKLKISIEDTGNGVDDEVLRRLGQRFFRVLGTK 406 L +N I++ P G I ++ ++ + + +E+TG+ L Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA---------------LKNT 307 Query: 407 QQGSGLGLS-ITKKIIQLHGGELHFMHASQGGLKVEVIL 444 ++ +G GL + +++ L+G E + + G ++L Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 30.6 bits (69), Expect = 0.029 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 28/145 (19%) Query: 49 AKVFARP-LEIYNNAP-ITQANFTQELKLLGYKTSSNYDKSGTYVAQGSNMYVHTRGFDY 106 A+V +RP L NA + + T +K+ G + + + G+ + + R Sbjct: 357 AQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKG-----ITYGTMLRMTPRVLTQ 411 Query: 107 GDS--------IEPEQVLELSFANDQVVEVRSTKPSSTGVARL---EPLLIGGIYPQHNE 155 GD IE S + + + T + VAR+ + L+IGGIY Sbjct: 412 GDKSEISLNLHIEDGNQKPNSSGIEGIPTISRTVVDT--VARVGHGQSLIIGGIYRDELS 469 Query: 156 DRVLIKLNSVPK----PLIEALIST 176 + + VP P I AL Sbjct: 470 VAL----SKVPLLGDIPYIGALFRR 490
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 74.7 bits (183), Expect = 3e-17 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 23/262 (8%) Query: 220 AKPLAGKTALVTGASRGIGEAIAHVLARDGAHVICLD-VPQQQADLDRVAADIGGSTLAI 278 AK + GK A +TGA++GIGEA+A LA GAH+ +D P++ + A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 279 DITAADAG---EKIKAAATKQGGLDIIVHNAGITRDKTLANMKPELWDLVININ----LS 331 D+ E + G +DI+V+ AG+ R + ++ E W+ ++N + Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 332 AAERVNDYLLENDGLNANGRIVCVSSISGIAGNLGQTNYAASKAGVIGLVKFTA-PILKN 390 A+ V+ Y+++ G IV V S YA+SKA + K + + Sbjct: 123 ASRSVSKYMMDRRS----GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 391 GITINAVAPGFIETQMTAAIPFAIREAGRRMNS----------MQQGGLPVDVAETIAWF 440 I N V+PG ET M ++ A + + +++ P D+A+ + + Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 441 ASTASTGVNGNVVRVCGQSLLG 462 S + + + + V G + LG Sbjct: 239 VSGQAGHITMHNLCVDGGATLG 260
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 9e-12 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 12/169 (7%) Query: 5 NRDQRREMILQAAMQIALAEGFTAMTVRRIATEAQTSTGQVHHHFSSASHLKAEAFLKLM 64 + R+ IL A+++ +G ++ ++ IA A + G ++ HF S L +E + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 EQLDEIEQTLQTTSQFQRLFILLGAENIDRLHPYLRLWNEAELLIEQDIE---------- 114 + E+E + ++F + + E + + LL+E Sbjct: 68 SNIGELEL--EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 115 IQKAYNLAMQSWHQAIVQSIECGQKEGEFKNRSNSTDIAWRLIAFVCGL 163 +Q+A + I Q+++ + + A + ++ GL Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 262 bits (670), Expect = 2e-84 Identities = 90/419 (21%), Positives = 190/419 (45%), Gaps = 13/419 (3%) Query: 7 ILTIIVLIYLPVTIDATVMHVATPSLSAALNLTANQLLWIIDIYSLIMAGLILPMGALGD 66 IL + ++ ++ V++V+ P ++ N W+ + L + G L D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 67 RIGFKKLLFIGTAVFGVGSLAAAFSPTAYA-LIASRAVLGLGAAMLIPATLSGIRNAFTE 125 ++G K+LL G + GS+ + ++ LI +R + G GAA PA + + + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIP 133 Query: 126 EKQRNFALGLWSTVGGGGAAFGPLVGGFVLEHFHWGAVFLINIPIILAVLVMIVMIIPKQ 185 ++ R A GL ++ G GP +GG + + HW +L+ IP+I + V +M + K+ Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKK 191 Query: 186 QEKTDQPINLGQALVLVVAILSLIYSIKSAMYNFSVLTVVMFVVGISTLIHFIRSQKRAT 245 + + ++ +++ V I+ + S +F +++V+ F++ F++ ++ T Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLI-------FVKHIRKVT 244 Query: 246 TPMIDLELFKHPVISTSIVMAVVSMIALVGFELLLSQELQFVHGFSPLQA-AMFIIPFMI 304 P +D L K+ ++ + + GF ++ ++ VH S + ++ I P + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 305 AISLGGPLAGICLNKWGLRRVSSLGILVSALSLWGLAQLNFSTDHFLAWTCMVFLGFSIE 364 ++ + G + GI +++ G V ++G+ ++S + L +T F+ + LG Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 365 IALLASTAAIMSSVPPQKASAAGAIEGMAYELGAGLGVAIFGLMLSWFYSRSIILPAEL 423 + ST S + + + ++ L G G+AI G +LS +LP E+ Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSF-LSEGTGIAIVGGLLSIPLLDQRLLPMEV 422
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 52.7 bits (126), Expect = 1e-09 Identities = 38/118 (32%), Positives = 45/118 (38%), Gaps = 26/118 (22%) Query: 390 QVIAPVSAVQPIEVISQPAMVEPEPEPEPEPEPEPEPEP-EPEPEPEPEPEPEPQPNQDL 448 QVI + QPI V MV P P+ P EPEPEPEP PEP + Sbjct: 34 QVIELPAPAQPISV----TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE----- 84 Query: 449 MVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEPASTAE 506 A V + P P +K VQ Q + VK +E PAS E Sbjct: 85 ---------------APVVIEKPKPKPKPKPKPVKK-VQEQPKRDVKPVESRPASPFE 126 Score = 38.0 bits (88), Expect = 6e-05 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 399 QPIEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPQPNQDLMVFDP 453 +P+P+P+P+P+P + + +P+ + +P E +P P Sbjct: 75 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAP 130
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 62.4 bits (151), Expect = 9e-14 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 4/189 (2%) Query: 3 KTILITGASSGLGAGMAHEFAAKGYNLAICARRLDRLETLKTELEHQYGIKVIAKSLDVT 62 K ITGA+ G+G +A A++G ++A ++LE + + L+ + A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVR 67 Query: 63 NYDQVFEVFRAFKQEFGYLDRIIVNAGVGNGRRIGKGNFEINRATAETNFISALAQCEAA 122 + + E+ ++E G +D ++ AGV I + E AT N + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 123 IEIFRAQNAGHLVVMSSMSAMRGLPK-HLSTYAASKAAVAHLAEGIRAELLDTPIKVSTI 181 + + +G +V + S A G+P+ ++ YA+SKAA + + EL + I+ + + Sbjct: 128 SKYMMDRRSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 182 FPGYIRTEM 190 PG T+M Sbjct: 186 SPGSTETDM 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.0 bits (122), Expect = 5e-09 Identities = 75/405 (18%), Positives = 153/405 (37%), Gaps = 43/405 (10%) Query: 25 LCMLAYIFSFIDRQILALMIEPIKADLQLSDTQFSLLHGLAFSLFYAVMGLPLAYIADRF 84 LC+L++ FS ++ +L + + I D + ++ AF L +++ ++D+ Sbjct: 19 LCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVN-TAFMLTFSIGTAVYGKLSDQL 76 Query: 85 SRPKLISIGIIVWSLATATCGLSKNFIQ-LFLSRMAVGVGEAALSPAAYSMFSDMFSKDK 143 +L+ GII+ + + +F L ++R G G AA + + K+ Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 144 LGRAVGIYSIGAFLGGGIAFLVGGYVIN--------LLKGVTLIEVPLLGAL----KAWQ 191 G+A G+ +G G+ +GG + + L+ +T+I VP L L + Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIK 196 Query: 192 IAFLVVGLPGIIIGLLFILTVKDPARKGQQLNQSGQVDQVKFTQCLQFIKKHAKTFACHY 251 F + G+ + +G++F + + V + F ++ I+K F Sbjct: 197 GHFDIKGIILMSVGIVFFMLFTTSYSISFLI-----VSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 252 LGFTFYAM-----------ALYSLTSWTPAFYIRKFQLAPTETGYMLGTILLVANTLGVF 300 LG M + S P QL+ E G ++ ++ + + Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 301 CAGWLNDWFIKKGRQDAPMFTGVIGIVGLIIP---IAFFTQTDQLWLSVTLLIPAMFFAS 357 G L D P++ IG+ L + +F +T ++++ ++ + Sbjct: 312 IGGILVDRR-------GPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 358 FPLVISATALQMLAPNQFRARLSALFLLASNLIGLGVGTTLVAII 402 VIS L + A +S L + + G G +V + Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFT--SFLSEGTGIAIVGGL 407
>SECA#SecA protein signature. Length = 901 Score = 28.3 bits (63), Expect = 0.014 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%) Query: 45 IDNTRRKIILSTNALGEASITDIANLSTLKLTTATKAVYRLVEDGIVEVYSSTTDERISM 104 ID R +I+S A + + N L K + + DE+ Sbjct: 216 IDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEG----HFSVDEKSRQ 271 Query: 105 VKLTAKGVELVEQINQISVVTLAGILNAFSE---DELHNLNHQLK 146 V LT +G+ L+E++ + G + +S +H++ L+ Sbjct: 272 VNLTERGLVLIEELLVKEGIMDEGE-SLYSPANIMLMHHVTAALR 315
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 27.2 bits (60), Expect = 0.038 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%) Query: 71 DSWQSIYDMFKRYTQKESHFVMNAHFVN 98 +SW + D+ R Q E N F Sbjct: 166 ESWTQVIDLRPRLGQIE----TNPQFAQ 189
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 27.8 bits (62), Expect = 0.023 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 14/114 (12%) Query: 1 MAYITSSVE--YAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEK--AGLVV 56 +A I S ++ A L L E + ++ +A + SP + ++ LEK A L Sbjct: 140 IALILSYLDPQKASFILSSL-PTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASLSS 198 Query: 57 AQEGVRGGYLLARSAHEISFLD------IVNAIEGEKPLFECQEVRGKCAVFNN 104 GG + I+ D I+ ++E E P +E++ K VF + Sbjct: 199 EDYTSAGG--VDNVVEIINMADRKTEKFIIESLEEEDPELA-EEIKKKMFVFED 249
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 1e-14 Identities = 31/186 (16%), Positives = 79/186 (42%), Gaps = 14/186 (7%) Query: 1 MARP---RSEDKRNAILSAAIETLAELG-ERASTSKIAKVAGVAEGTLFTYFSNKEELLN 56 MAR +++ R IL A+ ++ G S +IAK AGV G ++ +F +K +L + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 57 QLYLSLKAELRQVMMHGY-PTNADLQTQMSHIWQSYLDWSLEAPLKRKVMAQLSTSEQ-- 113 +++ ++ + ++ + D + + I L+ ++ +R +M + + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 114 -----ITEQSKQIGMQTFCDLTQNIQECINDGKLKDY--PPLFIASILGALAEVTLNFIA 166 + + + + ++++ + Q ++ CI L + G ++ + N++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 167 QDPSQT 172 S Sbjct: 181 APQSFD 186
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (314), Expect = 5e-37 Identities = 88/255 (34%), Positives = 125/255 (49%), Gaps = 9/255 (3%) Query: 8 LTGKIALVTGASRGIGEEIAKLLAEQGAHVIVSSRKIEDCQRVANEIIAANGKAEAAACH 67 + GKIA +TGA++GIGE +A+ LA QGAH+ E ++V + + A AEA Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 VGKLEDIAAIFEYIRKEHGRLDILVNNAAANPYFGHILDTDIGAYNKTVEVNIRGYFFMS 127 V I I I +E G +DILV N A G I + T VN G F S Sbjct: 66 VRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 128 VEAGKLMKEQGGGAIVNTASVNALQPGDRQGIYSITKAAVVNMTKAFAKECGPLGIRVNA 187 K M ++ G+IV S A P Y+ +KAA V TK E IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 188 LLPGLTKTKFASALFENED----IYKSWMDT----IPLRRHAEPREMAGTVLYLVSDAAS 239 + PG T+T +L+ +E+ + K ++T IPL++ A+P ++A VL+LVS A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 240 YTNGECIVVDGGLTI 254 + + VDGG T+ Sbjct: 245 HITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 3e-29 Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 10/252 (3%) Query: 7 GQVVLITGAASGFGALLAEQLAKYGAKLVLGDLNIEGLNTVVEPLRQAGVEVVAQVCDVS 66 G++ ITGAA G G +A LA GA + D N E L VV L+ A DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 67 CEADVQALVQSAVTQFGRVDVGINNAGMSPPMKSFIDTDEADLDLSFAVNAKGVFFGMKH 126 A + + + G +D+ +N AG+ P +DE + + +F+VN+ GVF + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE-EWEATFSVNSTGVFNASRS 126 Query: 127 QIRQMLQQGGGIILNVASVAGLGAAPKLAAYAAAKHAVVGLTKTAAVEYANKGIRVNAIC 186 + M+ + G I+ V S +AAYA++K A V TK +E A IR N + Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 187 PFYTTTPM---VVDSELKEKQDFLGQAS------PMKRLGHPSEVVAMMLMMCAKENSYL 237 P T T M + E +Q G P+K+L PS++ +L + + + ++ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 238 TGQAIAIDGGVT 249 T + +DGG T Sbjct: 247 TMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 84.7 bits (209), Expect = 3e-21 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 10/206 (4%) Query: 5 LSNRVAIVTGAGAGLGREHALLLARLGAKVVVNDLGSDVNGKGGSTMAAQKVVDEIIAAG 64 + ++A +TGA G+G A LA GA + D + K S++ A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE---------A 56 Query: 65 GEAMANGASVTDIEQVQQMVDETIARWGRVDILINNAGILRDKTFSKMSLDDFRTVIDVH 124 A A A V D + ++ G +DIL+N AG+LR +S +++ V+ Sbjct: 57 RHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVN 116 Query: 125 LMGAVNCTKAVWDIMREQKYGRIVMTTSSSGLYGNFGQSNYSAAKMALVGLMQTLALEGE 184 G N +++V M +++ G IV S+ + Y+++K A V + L LE Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 185 KSNVRVNCLAP-TAATRMLEGLLPEE 209 + N+R N ++P + T M L +E Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADE 202
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 5e-06 Identities = 82/432 (18%), Positives = 151/432 (34%), Gaps = 77/432 (17%) Query: 8 RHSWVSLVICWIIWVVVAYDRELIFRAANMICNEFNLSPTQWGYTIAAITLSLAVLSIPV 67 RH+ + + +C + + V + ++ + I N+FN P + A L+ ++ + Sbjct: 11 RHNQILIWLCILSFFSV-LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 68 AALSDKHASGWKRGIFQWPLVIGFTFISLLSGITSLSSSFYKFVTL-RIMVSLGCGVAEP 126 LSD+ G KR L+ G S I + SF+ + + R + G Sbjct: 70 GKLSDQL--GIKR-----LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA 122 Query: 127 VGVSNTAEWWPKEHRGFAIG--------------------AHHSGYPVGALLSGVAMATI 166 + + A + PKE+RG A G AH+ + L+ + + T+ Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITV 182 Query: 167 IT--YFGPQNWRYAF---FLGIIFAVPALTFWAIYSTRKRYSEF------------HQSC 209 + R GII + F+ +++T S H Sbjct: 183 PFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRK 242 Query: 210 VDNQFTPPTDFVHDEGEEKTSTHSTWERLKQTLSSRGIVFTAASTLITHVVYIGFLTIFP 269 V + F P + + I GF+++ P Sbjct: 243 VTDPFVDPGLGKN----------------------IPFMIGVLCGGIIFGTVAGFVSMVP 280 Query: 270 AFLYNIVGLDLAKSAGLSAVF--TITGMMGQIIWPTLSDKIGRRLTLILCGCWMAVS--I 325 + ++ L A G +F T++ ++ I L D+ G L + +++VS Sbjct: 281 YMMKDVHQLSTA-EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLT 339 Query: 326 ASFCL--TSGVVSVIAIQLFFGLSANAIWPIFYATASDYAPAGAIGTANSLITVAQYVGG 383 ASF L TS +++I + + GLS + S G SL+ ++ Sbjct: 340 ASFLLETTSWFMTIIIVFVLGGLSFTKT--VISTIVSSSLKQQEAGAGMSLLNFTSFLSE 397 Query: 384 AVAPIIMGYLLT 395 I+G LL+ Sbjct: 398 GTGIAIVGGLLS 409 Score = 31.4 bits (71), Expect = 0.007 Identities = 42/185 (22%), Positives = 66/185 (35%), Gaps = 20/185 (10%) Query: 261 YIGFLTIFPAFLYNIVGLDLAKSAGLS--------AVFTITGMMGQIIWPTLSDKIG-RR 311 + F ++ + N+ D+A F +T +G ++ LSD++G +R Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 312 LTLILCGCWMAVSIASFCLTSGVVSVIAIQLFFGLSANAIWPIFYATASDYAPAGAIGTA 371 L L S+ F S +I + G A A + + Y P G A Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 372 NSLITVAQYVGGAVAPIIMGYLLTSFGGWHSHQGYIWCFLLMSCCAFIGVILQIILGYLI 431 LI +G V P I G + W +LL+ I +I L L+ Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIH---------WSYLLL--IPMITIITVPFLMKLL 189 Query: 432 KKEKS 436 KKE Sbjct: 190 KKEVR 194
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 123 bits (309), Expect = 2e-33 Identities = 63/421 (14%), Positives = 136/421 (32%), Gaps = 84/421 (19%) Query: 14 PPKLTKMQYLKKHWVMVIAFIVVLVSILWILKVIFLPSSIVKTDDARVDV--EYSTIAPK 71 P L ++ ++A+ ++ ++ + + IV T + ++ I P Sbjct: 43 PAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPI 102 Query: 72 VSGNIEEIYIKDHQTVKKGQLLARIDARDYQAALAEAESNYAKAQAD------------- 118 + ++EI +K+ ++V+KG +L ++ A +A + +S+ +A+ + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 119 ----------------------------LNEAMLAVERQPTVIRET-----------EAQ 139 + E + Q A+ Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 140 LRKVEAGIKLTKDNTARYEQLQALGAESRLITQQSKTTLTEQYADLDSSKEKVIDAQYQL 199 + + E ++ K + L A ++ + + E +L K ++ + ++ Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282 Query: 200 NQYK---IQVQAK------------QAALKQAQAALDKAKLNLSYTEIRAPIDGMIGQKS 244 K V + L K + + IRAP+ + Q Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342 Query: 245 AN-VGNFVGAGNPLMVVVPLDQVY-VEANFREIELKQIKIGQPVTVYVDAYNV----ELK 298 + G V LMV+VP D V A + ++ I +GQ + V+A+ L Sbjct: 343 VHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLV 402 Query: 299 GVVDSFSPSTGAFFSPISATNATGNFTKIVQRLPLRIKLLENQPDIKLLRPGLSVVVSVD 358 G V + + G ++ + L +I L G++V + Sbjct: 403 GKVKNINLDA-------IEDQRLGLVFNVIISIEENC-LSTGNKNIP-LSSGMAVTAEIK 453 Query: 359 T 359 T Sbjct: 454 T 454
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.5 bits (118), Expect = 2e-08 Identities = 59/334 (17%), Positives = 113/334 (33%), Gaps = 18/334 (5%) Query: 22 NNRISSITLVDIRGEMGISVDSGYWVSSIYASAMIIGMILSTSWAVIFSMRRVLLFAIGL 81 N + +++L DI + S WV++ + IG + + ++R+LLF I + Sbjct: 29 NEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIII 88 Query: 82 CLFSSVLIPFSPN-IEIFYLLRGLQGLANGLTIPLLMACALRFLGPEIRLWGLACYALTA 140 F SV+ + + + R +QG L+M R++ E R Sbjct: 89 NCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIV 148 Query: 141 TFFPNLSAALAAFYLDVIGWKMIFFQTIPFCALSAALVYFGIPQDPLNYSRIKTYDWTGA 200 + A+ I W + ++ V F + +D G Sbjct: 149 AMGEGVGPAIGGMIAHYIHWSYLLL----IPMITIITVPFLMKLLKKEVRIKGHFDIKGI 204 Query: 201 ILAIIGLASLSTMLLHGNHLDWFHSKLICVLALMSAITLPLFLIHEWRYPTPLIKPQMLE 260 IL +G+ +L ++S ++ +F+ H + P + P + + Sbjct: 205 ILMSVGIV---FFMLFTTSYSISF-------LIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 261 IRNFGYAVI-ALFCFVVIGMSTSTLPLNYLSAVHGYKPTQTMWIGLQIAALQFIYIPIVI 319 F V+ F + S +P + VH + + + + I + Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPY-MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 320 KVLNQAWVDSRYVHGFGLLLVMVGCLGASQLDTT 353 +L YV G+ + V L AS L T Sbjct: 314 GILVDR-RGPLYVLNIGVTFLSVSFLTASFLLET 346
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 76.2 bits (187), Expect = 3e-19 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 4/158 (2%) Query: 12 QKILDAATKFFLIHGFSGTTTDMIQKEAGVSKATMYGCFKNKEAMFAAVIERQCTNMQKQ 71 Q ILD A + F G S T+ I K AGV++ +Y FK+K +F+ + E +N+ + Sbjct: 14 QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGEL 73 Query: 72 IM-SVETKAKNLRSALTEIGKTYLCFILSHSGLAFFRVCI---AEAVRFPELSGKFFEVG 127 + + S L EI L ++ I E V + + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 128 PQRLANIIAGYLEKSVKQGEIELTSSSEVAAHIFLSLL 165 + I L+ ++ + + AA I + Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 80.2 bits (198), Expect = 3e-19 Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 39/225 (17%) Query: 1 MNVLITGGTGFIGKQIAKEILKTGSLTLDGKQAKPIDKIILFDAFVGDD----------- 49 M L+TG GFIG ++K +L+ G +++ D +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG------------HQVVGIDNL--NDYYDVSLKQARL 46 Query: 50 -LPQDPKIEVVIGDITDKTTVANI--TEKIDVVWHLA--AVVSSAAEADFDLGMDVNLYG 104 L P + D+ D+ + ++ + + V+ V + E + D NL G Sbjct: 47 ELLAQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTG 105 Query: 105 LLNLLEELRKKQTMPRVIFASGCAVFGG--QLPEVVTDDTVVTPKSSYGMQKAVGELLVS 162 LN+LE R + + +++AS +V+G ++P TDD+V P S Y K EL+ Sbjct: 106 FLNILEGCRHNK-IQHLLYASSSSVYGLNRKMP-FSTDDSVDHPVSLYAATKKANELMAH 163 Query: 163 DYSRKGFIDGRVLRLPTIVVRPGKPNKAASTFFSSIIREPLKGET 207 YS + LR T+ G+P+ A F ++ L+G++ Sbjct: 164 TYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAM----LEGKS 204
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.8 bits (178), Expect = 3e-17 Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 2/206 (0%) Query: 1 MSKYKLKDKVVVITGSTGGLGLAIAQALQAKGAKLALLDLDLNKVESQAKQLGGKS-IAA 59 M+ ++ K+ ITG+ G+G A+A+ L ++GA +A +D + K+E L ++ A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 60 GWVADVRSLESLETAMANAAQHFGKIDVVIANAGIGSTEALEHMAPETFERTIDINLTGV 119 + ADVR +++ A + G ID+++ AG+ + ++ E +E T +N TGV Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 120 FRTFRAAIPYVK-QTQGYLLAVSSMAAFVHSPLNTHYTSSKAGVWALCDSLRLELKYLNI 178 F R+ Y+ + G ++ V S A V Y SSKA L LEL NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 179 GVGSLHPTFFKTPLMDNIQNDPAGKA 204 + P +T + ++ D G Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAE 206
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.2 bits (192), Expect = 4e-19 Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 6/187 (3%) Query: 8 KVVLITGAAGGIGAATAREFYALGANLVLTDMQQEAVDKLASEFEASRVLP--LALDITD 65 K+ ITGAA GIG A AR + GA++ D E ++K+ S +A D+ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 66 AVATKDVVQKTIKHFGHLDIAFANAGISWRDGASTIASCDEAEFDKIVEVDLLGVWRTVR 125 + A ++ + + G +DI AG+ R G I S + E++ V+ GV+ R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGV-LRPGL--IHSLSDEEWEATFSVNSTGVFNASR 125 Query: 126 AALPEV-TRNEGQILITSSVYCFVNGMANAPYAASKAAVEMLGRCLRTEIAYTGATASVV 184 + + R G I+ S V + A YA+SKAA M +CL E+A ++V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 YPGWTAT 191 PG T T Sbjct: 186 SPGSTET 192
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.3 bits (237), Expect = 1e-24 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 ILV +DD I ++ L R G V N A+ DL++ D+ +P+ N +++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 75 LNKIRQ-KAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131 L +I++ + PV++++A + + + A GA D++ KPF+ E++ + L + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 3e-09 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 19/196 (9%) Query: 55 VHAFRTAEIRPQVGGIIEKVLFKQGSEVRAGQALYKINSETFEADVNSNRASLNKAEAEV 114 H+ R+ EI+P I+++++ K+G VR G L K+ + EAD ++SL +A E Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 115 ARLKVQLERYEQ----------LLPSNAISKQEVSNAQAQYRQALADVAQMKAL--LARQ 162 R ++ E +S++EV + ++ + K L Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 163 NLNLQYATVRAPISGRIGQSFVTEG------ALVGQGDTNTMATIQQIDKVYVDVKQSVS 216 + TV A I+ S V + +L+ + A ++Q +K YV+ + Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENK-YVEAVNELR 269 Query: 217 EYERLQAALQSGELSA 232 Y+ ++S LSA Sbjct: 270 VYKSQLEQIESEILSA 285 Score = 50.2 bits (120), Expect = 8e-09 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 49/216 (22%) Query: 97 EADVNSNRASLNKAEAEVARLKVQLERYEQLLPSNAISKQEVSNAQAQYRQALADVAQMK 156 ++ ++ L + E+E+ K + + QL K E+ + RQ ++ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLF------KNEIL---DKLRQTTDNIGLLT 315 Query: 157 ALLARQNLNLQYATVRAPISGRIGQ-SFVTEGALVGQGDT-------------NTMATIQ 202 LA+ Q + +RAP+S ++ Q TEG +V +T + + Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNK 375 Query: 203 QIDKVY----VDVKQSV---SEYERLQAALQSGELSANSDKTVRITNSHGQPYNVTAKML 255 I + +K + Y L +++ L A D+ + G +NV + Sbjct: 376 DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRL------GLVFNVIISI- 428 Query: 256 FEDINVDPETGDVTFRIEVNNTERKLLPGMYVRVNI 291 + N L GM V I Sbjct: 429 ------------EENCLSTGNKNIPLSSGMAVTAEI 452
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1059 bits (2740), Expect = 0.0 Identities = 501/1028 (48%), Positives = 703/1028 (68%), Gaps = 9/1028 (0%) Query: 2 MSQFFIRRPVFAWVIAIFIIIFGLLSIPKLPIARFPSVAPPQVNISATYPGATAKTINDS 61 M+ FFIRRP+FAWV+AI +++ G L+I +LP+A++P++APP V++SA YPGA A+T+ D+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 62 VVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQNKIKAVEARLPQ 121 V +IE+ ++G+ NL+Y S+T+D++G+ IT TF+ GTD ++AQV VQNK++ LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 VVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKRVEGVGKVQSFGA 181 V+QQG+ VE SSS +LM+ G S N ++ D+SDY+ NV + L R+ GVG VQ FGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKGQLITIPLSAQGQL 241 + AMRIW+D + L Y L+ DV N ++ N +IA G+LG PA GQ + + AQ + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 242 SSLEQFKNISLKSKTNGSVIKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAV 301 + E+F ++L+ ++GSV++L DVA VE+G + YN NGKPA I+L+ GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 302 KTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLH 361 TA+ ++AK+ EL+ P+GM+ PYDT PFV++SI +V+ TL EA++LVF+VMYLFL Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 362 NVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENVERIM 421 N+R TLIP I P+ LLGTF ++ G+SIN LTMFGMVLAIG++VDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 422 ATEGLSPKDATSKAMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILF 481 + L PK+AT K+M +I ++GI +VL+AVF+PMAF GS G IY+QF++T+ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 482 SALLALILTPALCATILKPIDGHHQ--KKGFFAWFDRSFDKVTKKYELMLLKIIKHTVPM 539 S L+ALILTPALCAT+LKP+ H K GFF WF+ +FD Y + KI+ T Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 MVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQLPSDATAERTRNVVNQFENNLKDN 599 ++I+ +I P++F+PEEDQG F+T QLP+ AT ERT+ V++Q + N Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 600 --PDVKSNTTILGWGFSGAGQNVAVAFTTLKDFKERTS---SASKMTSDVNTSMANSTEG 654 +V+S T+ G+ FSG QN +AF +LK ++ER SA + + +G Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 655 ETMAVLPPAIDELGTFSGFSLRLQDRANLGMPALLAAQDELMAMAAKN-KKFYMVWNEGL 713 + PAI ELGT +GF L D+A LG AL A+++L+ MAA++ V GL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 714 PQGDNISLKIDREKLSALGVKFSDVSDIISTSMGSMYINDFPNQGRMQQVIVQVEAKSRM 773 L++D+EK ALGV SD++ IST++G Y+NDF ++GR++++ VQ +AK RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 774 QLKDILNLKVMGSSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAM 833 +D+ L V ++G++V S T W + RYNG PS+ I G TSSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 834 REMEQLIAKLPKGIGYEWTGISLQEKQSESQMAFLLGLSMLVVFLVLAALYESWAIPLSV 893 ME L +KLP GIGY+WTG+S QE+ S +Q L+ +S +VVFL LAALYESW+IP+SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 894 MLVVPLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK-MLKEEGMSLI 952 MLVVPLGI G ++A NDV+F +GL+T IGLSAKNAILIVEFAK ++++EG ++ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 953 EATVAAAKLRLRPILMTSLAFTCGVIPLVIASGASSETQHALGTGVFGGMISATILAIFF 1012 EAT+ A ++RLRPILMTSLAF GV+PL I++GA S Q+A+G GV GGM+SAT+LAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1013 VPVFFIFI 1020 VPVFF+ I Sbjct: 1021 VPVFFVVI 1028 Score = 88.7 bits (220), Expect = 7e-20 Identities = 52/323 (16%), Positives = 128/323 (39%), Gaps = 13/323 (4%) Query: 723 IDREKLSALGVKFSDVSDIISTS---MGSMYINDFPNQGRMQQVIVQVEAKSRMQ-LKDI 778 +D + L+ + DV + + + + + P QQ+ + A++R + ++ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG-QQLNASIIAQTRFKNPEEF 246 Query: 779 LNLKVMGS-SGQLVSLSEVVTPQWNKAPQQYN-RYNGRPSLSIAGIPNFDTSSGEA---- 832 + + + G +V L +V + R NG+P+ + ++ + Sbjct: 247 GKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAI 306 Query: 833 MREMEQLIAKLPKGIGYEWT-GISLQEKQSESQMAFLLGLSMLVVFLVLAALYESWAIPL 891 ++ +L P+G+ + + + S ++ L ++++VFLV+ ++ L Sbjct: 307 KAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATL 366 Query: 892 SVMLVVPLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVE-FAKMLKEEGMS 950 + VP+ + G + + G + G++ IGL +AI++VE +++ E+ + Sbjct: 367 IPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLP 426 Query: 951 LIEATVAAAKLRLRPILMTSLAFTCGVIPLVIASGASSETQHALGTGVFGGMISATILAI 1010 EAT + ++ ++ + IP+ G++ + M + ++A+ Sbjct: 427 PKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL 486 Query: 1011 FFVPVFFIFILGAVEKLFSSKKK 1033 P +L V K Sbjct: 487 ILTPALCATLLKPVSAEHHENKG 509
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 109 bits (274), Expect = 5e-31 Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 16/253 (6%) Query: 5 LRGKVAVVSGGATLIGKAVVQALVSAGAHVAILDIDAKGKAIAESFNHGVMFIQ----TD 60 + GK+A ++G A IG+AV + L S GAH+A +D + + S D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 LTSDAAIQQAVADIHQHLGEVSYLVNLACTYLDDGFKS-SRQDWIQALDLNLVSTIELSR 119 + AAI + A I + +G + LVN+A S S ++W +N SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 120 ALYNDLK-KQQGSIVNFTSISAKVAQTGRWLYPVSKAAIRQLTQSMAMDFAADGIRVNSV 178 ++ + ++ GSIV S A V +T Y SKAA T+ + ++ A IR N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 179 SPGWT-----WSRVIAEVSGNNREKADSVAADYHL---LGRLGHPEEVANVVLFLLSSAA 230 SPG T WS E K + L +L P ++A+ VLFL+S A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGS--LETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 231 SFVTGADYAVDGG 243 +T + VDGG Sbjct: 244 GHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 53.3 bits (128), Expect = 8e-10 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 8/151 (5%) Query: 24 ILGFFVFFCDGLDTGIIGFVAPALLDDWGITKPQLAP---VLSAALVGMSIGAIISGPLA 80 I+ D + G+I V P LL D + A +L+ + A + G L+ Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 81 DKFGRKGVIVFTSLLFSIFTILCGFANSTQDLMIYRFITGVGLGAAMPNISTIVSEYMPV 140 D+FGR+ V++ + ++ + A L I R + G+ GA +++ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDG 126 Query: 141 KRKA----FLTGLAGCGFMLGISCGGVLSAY 167 +A F++ G G + G GG++ + Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLMGGF 157 Score = 30.6 bits (69), Expect = 0.011 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 8/125 (6%) Query: 73 AIISGPLADKFGRKGVIVFTSLLFSIFTILCGFANSTQDLMIYRFITGVGLGAAMPNIST 132 A+I+GP+A + G + ++ + IL FA + G G MP + Sbjct: 264 AMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQA 322 Query: 133 IVSEYMPVKRKAFLTG----LAGCGFMLGISCGGVLSAYLLESY-GWAKVIIIGGSIPLI 187 ++S + +R+ L G L ++G + A + ++ GW I G ++ L+ Sbjct: 323 MLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGW--AWIAGAALYLL 380 Query: 188 LVVAL 192 + AL Sbjct: 381 CLPAL 385
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (316), Expect = 3e-37 Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 16/264 (6%) Query: 3 KLLDGKVAFITGSASGIGLEIAKKFAQEGAKVVISDMNAEKCQETASSLKEQGFDTLSAP 62 K ++GK+AFITG+A GIG +A+ A +GA + D N EK ++ SSLK + + P Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 CDVTDEVAYKQAIELTQKTFGTVDILINNAGFQHVAPIEEFPTAVFQKLVQVMLTGAFIG 122 DV D A + ++ G +DIL+N AG I ++ V TG F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 123 IKHVFPIMKAQKYGRIINMASINGLIGFAGKAGYNSAKHGVIGLTKVAALECARDGITVN 182 + V M ++ G I+ + S + A Y S+K + TK LE A I N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 183 ALCPGYVDTPLVRGQIADLAKTRNVSLDSALEDVILAM-------VPQKRLLSVEEIADY 235 + PG +T + AD ++ E VI +P K+L +IAD Sbjct: 184 IVSPGSTETDMQWSLWAD---------ENGAEQVIKGSLETFKTGIPLKKLAKPSDIADA 234 Query: 236 AIFLASSKAGGVTSQAVVMDGGYT 259 +FL S +AG +T + +DGG T Sbjct: 235 VLFLVSGQAGHITMHNLCVDGGAT 258
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 25.2 bits (55), Expect = 0.038 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 4/57 (7%) Query: 32 LQDDYNLIYASKGFCFKDQDAKEKYGNENCHTTKP----KFSDKEQQRLDAIKERQK 84 + D+ + A K N N H + + + + + QK Sbjct: 222 IFHDFVSVMAVSKEYSKYWKEIPYVNNVNPHMLQYLGNLPYDNSMFNYIKSTSPVQK 278
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 64.8 bits (158), Expect = 8e-14 Identities = 78/375 (20%), Positives = 125/375 (33%), Gaps = 51/375 (13%) Query: 1 MKKLLLAAAVATLSVNAVQAAPTLYGKLNVSINQVDNKNFDG-----KSDVTEVNSNSSR 55 MKK L+A +A L V A A TLYG + + + +G T + S+ Sbjct: 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59 Query: 56 IGVKGEEKLTDKLSAVYLAEWAISTDGSGSDTDLSARNRFIGLKTEGVGTLKVGKYDSYF 115 IG KG+E L + L A++ E S +G+D+ R FIGLK G G L+VG+ +S Sbjct: 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLKG-GFGKLRVGRLNSVL 116 Query: 116 KTSAGSNQDIFNDDTRLDITNIMYGENRLDNVVGFELDPKLLAGLTFNIMAQTGESTSDS 175 K G + L + I E RL + D AGL S S Sbjct: 117 K-DTGDINPWDSKSDYLGVNKIAEPEARL---ISVRYDSPEFAGL------------SGS 160 Query: 176 KKGETGKDSKNDSFDSVSTSLGYENKDLGLAIAAAGDFGIKGKYAAYGLKDVYTDAYRVT 235 + ++ + +S Y+N G + G + + + Y +R+ Sbjct: 161 VQYALNDNAGRHNSESYHAGFNYKNG--GFFVQYGGAYKRHHQVQENVNIEKY-QIHRLV 217 Query: 236 GSYDIAKSGFVVGALWQHAEPTDDLTAYGQTYKSDGSIDKAGKAYRGLEEEAYAVTAAYK 295 YD AL+ + Q + + V A Sbjct: 218 SGYD-------NDALY--------ASVAVQQQDAKLVEENYSHN------SQTEVAATLA 256 Query: 296 IPNTKLKVKAEYASAETQVSGQADRK--IDLYGLGLDYQINKQARFYGIVAQQKRDWLND 353 + + YA + D +G +Y +K+ + Sbjct: 257 YRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGES 316 Query: 354 DDKQTVVGTGIEYNF 368 T G G+ + F Sbjct: 317 KFVSTAGGVGLRHKF 331
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 27.3 bits (61), Expect = 0.013 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 139 IEQVAQQAQAPKEQVYGAIASVLPQVIDSLTPQGES 174 I +VA+ + K+ A+ +V V L +GE Sbjct: 8 IAKVAEATELTKKDSAAAVDAVFSAVSSYLA-KGEK 42
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 54.2 bits (130), Expect = 2e-10 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 2/171 (1%) Query: 201 AREREQGTFDQLLVTPYTPLQIMIGKALPPIFVGLMQSTIILLIILFWFKIPMNGSIGLL 260 R Q T++ +L T I++G+ + I ++ + L Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYAL 151 Query: 261 YFGLLSFNVAVVGVGLSISALSLNMQQAMLFTFLLIMPLMLLSGLLTPVENMPKALQVAT 320 L+ +A +G+ ++AL+ + + + L+I P++ LSG + PV+ +P Q A Sbjct: 152 PVIALT-GLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAA 210 Query: 321 YANPLRFGINLVQRVYLEGASFAQVKLNFLPMIVLGIVTLPLAAWLFRNRL 371 PL I+L++ + L V + + + ++ L+ L R RL Sbjct: 211 RFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVIPFFLSTALLRRRL 260
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 38.4 bits (89), Expect = 2e-05 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 6/142 (4%) Query: 202 ARERERGTLEALFVTPVRPFEIVLAKLIPYVVVGMIDIVICIVAAHFIFEVPMRGSLFSI 261 R + T EA+ T +R +IVL ++ + V A + L+++ Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYAL 151 Query: 262 LSASFLYLIVSLLLGLTISGFAQSQ--FQASQIALLASFMPALMLSGFVFDTRNLPLVVQ 319 + L + L G+ ++ A S F Q ++ P L LSG VF LP+V Q Sbjct: 152 PVIALTGLAFASL-GMVVTALAPSYDYFIFYQTLVIT---PILFLSGAVFPVDQLPIVFQ 207 Query: 320 IISQLLPATHFMVLIKTLFMGG 341 ++ LP +H + LI+ + +G Sbjct: 208 TAARFLPLSHSIDLIRPIMLGH 229
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.009 Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 44 VLVGPDGAGKTTLLRLIAGLY 64 VL G G GK+TL+ + GL Sbjct: 600 VLEGTGGIGKSTLINTLVGLD 620
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.1 bits (130), Expect = 4e-10 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 20/173 (11%) Query: 54 SGRIQKLLVQEGDKVQAGQVLATLNTNALQIQAKQAQAQLKAQQEAIIKQEIGARPEEIT 113 + +++++V+EG+ V+ G VL L + + Q+ L Sbjct: 104 NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLL------------------- 144 Query: 114 QAKAQLASAQAELDKTNKNLQRLQILVSSTDGRAISQQELDYAKSNQHSAEAAVRERQAN 173 QA+ + Q N L + +S++E+ S + + ++ Sbjct: 145 QARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQ 204 Query: 174 LELLIKGARKEDREATRAQYEVTKANLDLIKYNLTQAELRSPVNAVVRARLQE 226 EL + R E A+ + + K L A+ + + E Sbjct: 205 KELNLDKKRAERLTV-LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLE 256 Score = 38.7 bits (90), Expect = 3e-05 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 49 LAFEQSGRIQKLLVQEGDKVQAGQVLATLNTNALQIQAKQAQAQLKAQQ-EAIIKQEIGA 107 L +Q+ +L QE V+A L + QI+++ A+ + Q + K EI Sbjct: 243 LLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL- 301 Query: 108 RPEEITQAKAQLASAQAELDKTNKNLQRLQILVSSTDGRAISQQ 151 +++ Q + EL K + Q I + + + Sbjct: 302 --DKLRQTTDNIGLLTLELAKNEERQQASVI-RAPVSVKVQQLK 342
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 1e-14 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 1/147 (0%) Query: 1 MSRSRRSDGDLTKTKIIEAAGPLIAQYGFAKTANKTIAKVANVDLAAINYHFDGRDGLYQ 60 M+R + + T+ I++ A L +Q G + T+ IAK A V AI +HF + L+ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AVLMEAHAHYLDEQYLLELVESTYSPEEKLSLLLETLLHKLTEKDVWHGKVFIRELFSPS 120 + E + E L + P L +L +L ++ + I Sbjct: 61 E-IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 121 EHLLSFIELTGMRKFFLIRKLISQVAN 147 ++ ++ I Q Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLK 146
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 37.2 bits (86), Expect = 2e-04 Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 17/161 (10%) Query: 556 DGNPLNRKVPTSDLESQGVEVGLSGQITDNVNLSLGYAQFSIKDTKNGGEARTYNPNQTL 615 D +N PT + G Q+ V +GY K E Y Q + Sbjct: 41 DTGFINNNGPTHE-NQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYK-AQGV 98 Query: 616 NLLTTYTPPVLPKL----KVGAGLQWQDGIKLYDSNVNGTIKQDAYALV-NLMASYEVND 670 L P+ L ++G + D SNV G + V Y + Sbjct: 99 QLTAKLGYPITDDLDIYTRLGGMVWRAD----TKSNVYGKNHDTGVSPVFAGGVEYAITP 154 Query: 671 HITLQANGNNIFDKKYLNSFPDGQAFYGAPANYTVAVKFKY 711 I + + ++ N+ D P N +++ Y Sbjct: 155 EIATRL------EYQWTNNIGDAHTIGTRPDNGMLSLGVSY 189
>PF04183#IucA / IucC family Length = 580 Score = 186 bits (473), Expect = 2e-53 Identities = 106/511 (20%), Positives = 191/511 (37%), Gaps = 35/511 (6%) Query: 130 SADKVQAFYEQLQKCL-KQYHLLQQHR-VNAHDLLNQSLAHRFRILEQYAGYRDRPYHPL 187 S V + L L LL+ R ++A DL+N + +L P Sbjct: 88 SDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINLNADRLQCLLS------GHPKFVF 141 Query: 188 AKLKEGLSQQEYMQYCPEFAQELSIHWVAVHKDKMMFGDGVENIFKQQPSEIFIPRAERY 247 K + G ++ +Y PE+A +HW+AV ++ M++ E Q + P+ E Sbjct: 142 NKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQ-EFA 200 Query: 248 QLKQEMFQRGLNETHIAMPIHPWQFEHLFPKFYADDIADGICHPLNFISKGMYASASMRS 307 + Q + GL+ + +P+HPWQ++ + D A+G L A S+R+ Sbjct: 201 RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRT 260 Query: 308 LLSK-NVLEESLKLPIGIKALGSLRFLPIVKMINGEKNQKLLQQAKAKDAVLKQKLWLCE 366 L + +KLP+ I R +P + G + LQQ A DA L Q + Sbjct: 261 LTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVIL 320 Query: 367 ETQWWSYLPEKQNDRTADNEWLFVEKPTHLAAQRRHIPAELLQEPYQLIPMASLGHTIMG 426 Y+ + A + + E L R P L+ + MA+L Sbjct: 321 GEPAAGYVSHEGYAALARAPYRYQE---MLGVIWRENPCRWLKPDESPVLMATLMECDEN 377 Query: 427 EPAIFDYILQLQHKDINSKQILIEFEKLCTCFFDVNLRLF-RLGLMGEIHGQNICLVLKN 485 + + ++++ +L L R G+ HGQNI L +K Sbjct: 378 NQPLAGAY--IDRSGLDAETW---LTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKE 432 Query: 486 GEFDGLMFRD-HDSLRIYLPWVEQSGLKDPNYLSPHDFRNTLYHESVEALLFYIQTLGIQ 544 G ++ +D +R+ + + L P + R+ S + L+ +QT G Sbjct: 433 GVPQRVLLKDFQGDMRLVKEE-----FPEMDSL-PQEVRDVTSRLSADYLIHDLQT-GHF 485 Query: 545 VNLGCIVDNLASHYQIEVKDLWSVLAHALQQVIQNLNFQ-PEILTQLQHLLFEVPEWPYK 603 V + + L + + + +LA V+ + + P++ + P+ Sbjct: 486 VTVLRFISPLMVRLGVPERRFYQLLA----AVLSDYMKKHPQMSERFALFSLFRPQIIRV 541 Query: 604 QLLRPLL---EQDTRIGSMPSGIGKTRNPLW 631 L L + D +P+ + +NPLW Sbjct: 542 VLNPVKLTWPDLDGGSRMLPNYLEDLQNPLW 572
>PF04183#IucA / IucC family Length = 580 Score = 409 bits (1053), Expect = e-138 Identities = 148/588 (25%), Positives = 257/588 (43%), Gaps = 42/588 (7%) Query: 32 VEQRVIKQLLQALIFEDIIHSEYDGKNFIIEVQNSQGQTIRYVAAGQRQYSYKLVRLVRN 91 V +R++ ++L L +E + H+E G + + Q+ + R + Sbjct: 9 VNRRLVAKMLSELEYEQVFHAESQGDDRYC------------INLPGAQWRFIAERGIWG 56 Query: 92 QDVFRQDENGHYQIATLNLVIDEILRTITDAAKVED-----FIFELKRTFIHDLQSQAC- 145 + + A ++ +L + + D + +L T + DLQ Sbjct: 57 W---LWIDAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKAR 113 Query: 146 FDHYALPAIQYPYDILESYLMDGHPYHPCYKSRVGFSLQDNVRYGVEFAQPIALVWLAVH 205 A I D L+ L+ GHP K R G+ + RY E+A L WLAV Sbjct: 114 RGLSASDLINLNADRLQC-LLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVK 172 Query: 206 QDIVAKKHSEDIEPDLFFKEQLNSQDQELFLQHLSDRDLKAEEYIWIPVHPWQWENHLIS 265 ++ + + +++ ++ Q+ F Q + L ++ +PVHPWQW+ + + Sbjct: 173 REHMIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGL-DHNWLPLPVHPWQWQQKIAT 231 Query: 266 IFAEEILNGKIVYLGQSQDRYLAQQSLRTMTNLQHPEKPYIKLSMSLTNTSSSRVLAKHT 325 F + G++V LG+ D++LAQQSLRT+TN IKL +++ NTS R + Sbjct: 232 DFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRY 291 Query: 326 VMNGPIITDWLQRLIKQSKTAQELDFAVLHEVYGLSVD---FTKLPKSHAQQAYGTIGCL 382 + GP+ + WLQ++ T + +L E V + L ++ + +G + Sbjct: 292 IAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQ-EMLGVI 350 Query: 383 WRESVHQYLREGEDAIPLNGVSHIQKDGQALIAPWLQQYG--VESWTRQLLKVVITPLIH 440 WRE+ ++L+ E + + + ++ Q L ++ + G E+W QL +VV+ PL H Sbjct: 351 WRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYH 410 Query: 441 LLFAEGIATESHGQNIILVHKQGWPTRVLLKDFHDGVRYSPAHLAHPELAPELDQLPPEH 500 LL G+A +HGQNI L K+G P RVLLKDF +R PE+D LP E Sbjct: 411 LLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEF------PEMDSLPQEV 464 Query: 501 AKTNSMSFILTDDLNGIRDFSCACLFFVALTDIAIFLNQNFDLPEKSFWQWAAEVIQNYQ 560 + + FV + L +PE+ F+Q A V+ +Y Sbjct: 465 RD------VTSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYM 518 Query: 561 QQHPEHASRYQLFDVFAEKLRIESLTKRRL-FGDRSIQIKFVDNPLAP 607 ++HP+ + R+ LF +F ++ L +L + D + + N L Sbjct: 519 KKHPQMSERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLED 566
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 126 bits (319), Expect = 5e-34 Identities = 88/430 (20%), Positives = 180/430 (41%), Gaps = 19/430 (4%) Query: 33 LNNSSFNPAIPHLMSYFQVGEVWASWVVVAFLLAMSISLPLAGFLSQRFGKRSIYLIALL 92 LN N ++P + + F +WV AF+L SI + G LS + G + + L ++ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 93 GFALASTAGGLFNQFESVLI-ARALQGFCSGLMIPLSLGLIFSVTPSEQRGSTTGLWGAM 151 S G + + F S+LI AR +QG + L + ++ P E RG GL G++ Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 152 IMLTLAVGPMLGALVLVWLNWKALFFINLPVACLALILGYVFLPKEQGDNKQEFDWAGFF 211 + + VGP +G ++ +++W + + +P+ + + + L K++ K FD G Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGII 205 Query: 212 FLGSSIVLLLGTLSQIHQIQDLLQPLYGVL-LVLSVLLFIRFIFVQKNKSMPLIELALFA 270 + IV + L Y + L++SVL F+ F+ + + P ++ L Sbjct: 206 LMSVGIVFFM-----------LFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 271 TKGFRYSLVICVAQTVGLFIGMLLIPLWIQHLLKLSPLWTGFALMSSAVVTGICSQP-AG 329 F ++ + + ++P ++ + +LS G ++ ++ I G Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG 314 Query: 330 KYLDRYGAAKIMSLGLMITVASFLLLAWAPVQNVWFIVFCMILHGLGMGLSYMPSTTAGL 389 +DR G ++++G+ SFL ++ WF+ ++ G+ + +T Sbjct: 315 ILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVS 374 Query: 390 NSLRQQQQHLVTQAAALNNLFRRIFAAVAVVIAALYLQLRQQSLPLNTQAIFTSFHTMQE 449 +SL+QQ+ +L N + + I L + L + S + Sbjct: 375 SSLKQQE---AGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSN 431 Query: 450 IFVCCAILIL 459 + + + +I+ Sbjct: 432 LLLLFSGIIV 441
>PF04183#IucA / IucC family Length = 580 Score = 211 bits (539), Expect = 5e-63 Identities = 91/479 (18%), Positives = 183/479 (38%), Gaps = 35/479 (7%) Query: 80 IDGQWQKISAGTIVSLLLEELVIESQFKLDA--ASLLEKWIQSRDALLQFLKQRHN-DFD 136 ID Q + + +++ L + + DA A ++ + LQ LK R Sbjct: 60 IDAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSAS 119 Query: 137 DLVKAGQNFIESEQALILGHSMHPAPKSRNGFVHEDWLKFSPEHAGKTQLHYWLVHQNYI 196 DL+ + Q L+ GH K R G+ E +++PE+A +LH+ V + ++ Sbjct: 120 DLINL---NADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHM 176 Query: 197 AEGCATEQPISDQVKDAI---RWYLSESDLNLLKTHVEFKLLPLHPWQARYLQGKPWFEQ 253 C E I + A+ + + LP+HPWQ + + Sbjct: 177 IWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIAD 236 Query: 254 LKQTGQLIDIGLRGWQSSPTTSIRTLASFNAPW--MVKTSLSVMITNSIRVNLAKECHRG 311 + G+++ +G G Q S+RTL + + +K L++ T+ R + G Sbjct: 237 FAE-GRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAG 295 Query: 312 EISYRLWHSDLGKKILKQCPTLKAVNDPAWIALQIDGEIINETICIFRDQPFAVQQQVTC 371 ++ R + +PA + +G P+ Q+ + Sbjct: 296 PLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA------ALARAPYRYQEMLGV 349 Query: 372 I---ASLCQDHPNKELNRFNALFDQIAQKNQQT-------NFKEIALDWFDHFLKIGLAP 421 I P++ L + +N Q A W ++ + P Sbjct: 350 IWRENPCRWLKPDESPVLMATLME--CDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVP 407 Query: 422 LMYVYHKYGMAFESHQQNVLLELEDGLPKNLWLRDNQG-FYYIEEFATEIVEALPDLLEK 480 L ++ +YG+A +H QN+ L +++G+P+ + L+D QG ++E E+ ++LP + Sbjct: 408 LYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEM-DSLPQEVRD 466 Query: 481 AHAVGPKDF-VDERFSYYFFGNTLFGLINAIGATGYISEDELLIHLQQNLLQLLEQYPD 538 + D+ + + + +F T+ I+ + + E L L ++++P Sbjct: 467 VTSRLSADYLIHDLQTGHFV--TVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQ 523
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 48.8 bits (116), Expect = 9e-10 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 11/148 (7%) Query: 9 SQKGFTLIEVMVVIVIMTIMTSLVVLNIGGVDQKKAMQARELFLLDLQKINKESLDQSRV 68 Q+GFTL+E+M+++++M + +V+L A Q F L+ + + L + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 69 LALETHGERDVSPFSYELYEYHDQSTLQVQDIKNRWQKYTEFKTRQLPAHVSFSVQPLDD 128 + V P ++ + + W Y R S S + Sbjct: 62 FGVS------VHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGS---IAG 112 Query: 129 Q--NYSKAKNTDLIGGQTPQLIWFGNGE 154 N + A+ G P ++ F GE Sbjct: 113 GKLNLAFAQGEAWTPGDNPDVLIFPGGE 140
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 3e-11 Identities = 17/82 (20%), Positives = 37/82 (45%) Query: 3 RQAQFRAREALIFQVAEQLLLENGEAGMTLDVLAAELDLAKGTLYKHFQSKDELYMLLII 62 + + + I VA +L + G + +L +A + +G +Y HF+ K +L+ + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 63 RNERMLLEMVQDTEKAFPEHLA 84 +E + E+ + + FP Sbjct: 65 LSESNIGELELEYQAKFPGDPL 86
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.010 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 20 LLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRL 79 +L+ D I V++QA G+D + I +G D+V+T P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMP-DENAF 63 Query: 80 SEVARIKGWDAD 91 + RIK D Sbjct: 64 DLLPRIKKARPD 75
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 79.7 bits (196), Expect = 6e-21 Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 9/190 (4%) Query: 1 MSKKEDIINTALELFNQIGYNATGVDKIIAESNVAKMTFYKYFPSKESLIMECLHHRNIN 60 ++ I++ AL LF+Q G ++T + +I + V + Y +F K L E N Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 IQNSIYEKLSLHPDVS---PIEKIHLIFNWYIDWINSKNFNGCLFKKAFI--EVSKQYTS 115 I E + P E + + + + +F K E++ + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 116 IREPFQEYTNWLINLLNSLLVELDIK---DPTPLTHIIISIIDGIIIDGTIDKDLID-PS 171 R E + + L + + I+ I G++ + D Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189 Query: 172 KKWQYIEYLI 181 + Y+ L+ Sbjct: 190 EARDYVAILL 199
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 30.9 bits (69), Expect = 0.002 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 13/114 (11%) Query: 28 INLSVSSVHRRIKHLIE---ANIMGQLKREINFSKLGFTLHILLQVSLSKHDSETFDKFL 84 +NLS+S +HR++ L++ + G+L+ + +K T L S ++ + F + Sbjct: 1 MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANK-ETTFQGLTIASGARESEKVFAQ-- 57 Query: 85 SEIEAIPEVTNAFLVTGQSADFILELVARNMDDYSEILLRRIGKIDNV-VALHS 137 + V N L +A + V N+++Y LR +G ++V V+L S Sbjct: 58 ---TVLSHVANVVLTQEDTAKLLQSTVKHNLNNYD---LRSVGNGNSVLVSLRS 105
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 27.9 bits (62), Expect = 0.036 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 82 FEFQSDTYWGPLFSSVVTFAIFEAAFFSEIVRSGIQSISKGQVNAGYALGFTYGQSMRYV 141 +++S G L S F+ A E +R G + G + F YG V Sbjct: 458 MQYESSVSLGYLNQS------FQNAVM-EGIRYGCEQGLYGWNVTDCKICFKYGLYYSPV 510 Query: 142 VLPQAFRNMLPVLLTQTI-----ILFQDVSLVYVISAPDFLGRADTLANTYG 188 P FR + P++L Q + L + + + ++L RA T A Y Sbjct: 511 STPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYC 562
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.8 bits (62), Expect = 0.044 Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 63 IVAFLIAFLLGSLLGVIRTLPNKPLAFIGNCYVEIFRNIPLIVQLFFWAFVFPEFL 118 +++ LI ++ L + LP + I +I R + +I + F ++ Sbjct: 149 LLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISIADYA 204
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 29.0 bits (65), Expect = 0.016 Identities = 9/52 (17%), Positives = 15/52 (28%) Query: 253 AGSWGKQGGGSYGFENGHMLLWTQWANPEDRPNFPKADEYTEKYGEAMSKWM 304 A + G G + L + P ++ + P E M W Sbjct: 72 ALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWR 123
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.029 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 247 VTNDFDLVALE-KLNELQAKFPWFEYRTVVASPESNHERKG 286 +T D+DL AL L E++ + P E+ VV +P S ++KG Sbjct: 488 LTADYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKG 528
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 98.2 bits (244), Expect = 1e-26 Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 7/259 (2%) Query: 3 NRQRFTDKVVIVTGSAQGIGRGVALQVAAEGGQVIMAD-RSEYVEEVLTEIQRAGGEAVT 61 N + K+ +TG+AQGIG VA +A++G + D E +E+V++ ++ A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 62 INADLETYASAQAVVAKAIEHYGRVDVLINNVGGAIWMKPFEEFSEEEIIKEVNRSLFPT 121 AD+ A+ + A+ G +D+L+ NV G + S+EE + + Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 122 LWCCRAVLPAMIKQQSGVIVNVSSIA--TRGINRIPYSASKGGVNALTASLAFEHAKDGI 179 R+V M+ ++SG IV V S + Y++SK T L E A+ I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 180 RVNAVATGGTEAPPRKVPRNTNPLSQNEKDWMQQVVDQTKDRTFMGRYGTIQEQVNAILF 239 R N V+ G TE + + + ++ ++ K + + + +A+LF Sbjct: 181 RCNIVSPGSTET---DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 240 LASDEASYITGSIIPVGGG 258 L S +A +IT + V GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 74.5 bits (183), Expect = 2e-16 Identities = 73/405 (18%), Positives = 147/405 (36%), Gaps = 17/405 (4%) Query: 21 HWKVLIWCLLIIIFDGYDLVIYGVALPLLMQQWSLTAVEAGLLASAALFGMMFGAMIFGT 80 H ++LIW ++ F + ++ V+LP + ++ + +A + G ++G Sbjct: 12 HNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71 Query: 81 LSDKLGRKKTILICVTLFSGFTFIGAFAKGPTEFAIL-RFIAGLGIGGVMPNVVALMTEY 139 LSD+LG K+ +L + + + IG I+ RFI G G V+ ++ Y Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 140 APKKIRSTLVAIMFSGYAIGGMTSALLGAWLVKDMGWQIMFLIAGIPLLLLPLIWKFLPE 199 PK+ R ++ S A+G +G + + W + LI I ++ +P + K L + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 200 SLAFLVKSNHSEQAKSIVSKIAPQTQVNANTQLVLNEST-------TTDAPVRALFQQGR 252 + + V + + + L S V F Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 253 TFSTFMFWIAFFMCLLMVYALGSW--LPKLMLQAGYSLG---ASMLFLFALNIGGMVGAI 307 F I ++ + + + M++ + L + +F + ++ Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 308 GGGALADRFHLKPVITIMFIVGSAALILLGI---NSPQFILYSLIAIAGAATIGSQILLY 364 GG L DR V+ I S + + + F+ ++ + G + ++ ++ Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF-TKTVIS 370 Query: 365 TFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALLSFELPHQ 409 T V+ GM + + G + G LLS L Q Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415 Score = 31.8 bits (72), Expect = 0.006 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 304 VGAIGGGALADRFHLKPVITIMFIVGSAALILLGINSPQF---ILYSLIAIAGAATIGSQ 360 +G G L+D+ +K ++ I+ ++ + F I+ I AGAA + Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA- 122 Query: 361 ILLYTFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALLS-FELPHQMNFLAIAIPG 419 L+ VA++ P R G I +G +GP + G + + + I I Sbjct: 123 -LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181 Query: 420 V 420 V Sbjct: 182 V 182
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 29.5 bits (66), Expect = 0.005 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 1 MKKSLLAIALMSTLLVACNKHENKTETTSD 30 MK L A+AL +TLLV C + SD Sbjct: 1 MKLRLSALALGTTLLVGCASSGTDQQGRSD 30
>PF05043#Transcriptional activator Length = 493 Score = 29.9 bits (67), Expect = 0.016 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 3 LERVDLNLLIYLDVLLREK---NVTRAAEQLGVTQPAMSNILRRLRNLFNDPLLIRSSEG 59 L + L L++L K + + AE L T+ A+ + L +++ F D + S+ G Sbjct: 5 LSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNG 64 Query: 60 M 60 + Sbjct: 65 I 65
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 27.9 bits (62), Expect = 0.025 Identities = 18/83 (21%), Positives = 31/83 (37%) Query: 51 LDLSGSEQELQQRYAEPEEIKKVGRPKLGVISREITLQKKHWDWLDQQSASASAVIRKLI 110 L LS E+EL R ++IKK I +E QK + Q A ++++ + Sbjct: 31 LKLSKKEKELIWRNTVKKDIKKSICFFNDEIIQEPMRQKYIFICWLQGIEKAPYIVQQCV 90 Query: 111 DKELNNPNSEGNIMLAKQAIDRF 133 N I++ + Sbjct: 91 ASVKKNSGDFKVIIIDGNNYKEW 113
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 67.6 bits (165), Expect = 5e-14 Identities = 56/181 (30%), Positives = 77/181 (42%), Gaps = 26/181 (14%) Query: 33 VDDGKSTLIGRLLYDSKLIYEDQLQAVTRDSKKVGTTGDAPDLALLVDGLQAEREQGITI 92 VD GK+TL LLY+S I +L +V + GTT D ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAI--TELGSVDK-----GTT--------RTDNTLLERQRGITI 56 Query: 93 DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAIILIDARYGVQTQTRRHTFIA 152 F E K I DTPGH + + S D AI+LI A+ GVQ QTR Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 153 SLLGIKNIVVAINKMDLVEYSSERFNEIQVEYDAFVSQLGDRRPANILFVPISALNGDNV 212 +GI I INK+D + ++ + ++ A I+ L + Sbjct: 117 RKMGIPTIFF-INKID----------QNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMC 165 Query: 213 V 213 V Sbjct: 166 V 166
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.042 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%) Query: 350 RDGMNLVAKEYIAAQDPENPGVLILSKYAGAAEQMTQAL-------IVDPLDRAAMMDSL 402 + +L+ + I P+ P VL++S +A + P D ++ + Sbjct: 60 ENAFDLLPR--IKKARPDLP-VLVMSAQ-NTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 403 KTALEMSKAERINR 416 AL K Sbjct: 116 GRALAEPKRRPSKL 129
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 2e-06 Identities = 59/352 (16%), Positives = 118/352 (33%), Gaps = 20/352 (5%) Query: 52 ANFGLLLLCMGIGSMIAMPATGALVKRWGCRPLIAVATILLMILLPSLTIWHSLVSMAVA 111 A++G+LL + P GAL R+G RP++ V+ + + L + + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 112 LFIFGTAAGSLGVAINLQAVVVEKHSLRALMSSFHGMCSLGGLIGAMLVTALLAIGLSPL 171 + G + VA A + + RA F C G++ ++ L+ G SP Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDE-RARHFGFMSACFGFGMVAGPVLGGLMG-GFSPH 160 Query: 172 MSTLSVVMVLLVVSFVAIPSALTTFEQDEQGAAEITDAPKKSSRPNGTILLIGMMCFIAF 231 + + + + + + + P S R + ++ + + F Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 232 L----SEGAAMDWGGIYLTSKYQLNPAFAGLAYTFFAL--SMTSGRFAGHILLKQWGEKT 285 + + A W I+ ++ + G++ F + S+ G + + GE+ Sbjct: 221 IMQLVGQVPAALW-VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG-PVAARLGERR 278 Query: 286 IVTYSAIVAALAMVTIVMAPVWQVVVLGYALLGLG--CSNIVPVMFSRVGRQNDMPKAAA 343 + I + + A + LL G + M SR + + Sbjct: 279 ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQG 338 Query: 344 LSLVSTIAYTGSLSGPALIGLI-----GQWTSLTTVLSGVAVLLTMIAILNR 390 + + S+ GP L I W + G A+ L + L R Sbjct: 339 SL--AALTSLTSIVGPLLFTAIYAASITTWNGWAWIA-GAALYLLCLPALRR 387
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 36.0 bits (83), Expect = 2e-05 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%) Query: 46 HEMQEE-----ASHADAIIRRVLFLGAKPNMHREDINVGTDV---------VSCLKADLA 91 HE EE A D I R+L +G +P ++ + ++A + Sbjct: 47 HEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVN 106 Query: 92 LEYHVREKLATGIKLCEEKGDYISRDMLRQQLSDTEE 128 + + I L EE D + D+ + + E+ Sbjct: 107 DYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK 143
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 33.7 bits (77), Expect = 8e-04 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 21/136 (15%) Query: 3 INTIIGIVVAIIIMLIGLRMILKKPNHAEPSLD--SDLHINPESNQPVIPRHVRDQLEQP 60 ++ I I+ ++IGL +D I ES + R LE Sbjct: 26 AAIVMMIASVILPLVIGLNF----------GIDFKGGTTIRTESTTAIDVGVYRAALE-- 73 Query: 61 EVTVASAAVAERVEPTLSEP-------AQSEEKGTKELEQASQAQTVQTQVPVENTPVEV 113 + + ++E +P+ E Q +E G Q +Q Q + +V T V+ Sbjct: 74 PLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDP 133 Query: 114 EEVKAEENTVSPTVSE 129 +V P VS Sbjct: 134 ALKITSFESVGPKVSG 149
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 61.2 bits (148), Expect = 2e-11 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 7/272 (2%) Query: 651 EQVLQKQQPELQALDQIIVQQKDELGQLQVDLQQKQQVIKQKQKDLQQLDVQIAKQQTAA 710 + +AL + +EL + L++ + + +K +Q+L+ + A + A Sbjct: 70 KLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKAL 129 Query: 711 QAFLLQKQQLKDQLAQLDTQLEEDAMQKDDLEIDLHALAMKLETILPDYKTLQFQVEELT 770 + + ++ L+ + A +K DLE L KTL+ + L Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 189 Query: 771 EQLEEQQQVLQQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQITAQMEQAKKFVD 830 + E ++ L+ LE + + L ++ + +E A F Sbjct: 190 ARQAELEKALEGAMNFSTADSAKIKT-------LEAEKAALAARKADLEKALEGAMNFST 242 Query: 831 PIQLELPNLESEFQQQFAQTEKLQKTWNEWQIELNSVQEKQQTLTDQRHQYQQQDEKLRE 890 ++ LE+E A+ +L+K + K +TL ++ + + L Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 891 QLEAKRLAWQAAKSDREHYQEQLKELNAELQT 922 Q + Q+ + D + +E K+L AE Q Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQK 334 Score = 43.1 bits (101), Expect = 6e-06 Identities = 37/246 (15%), Positives = 87/246 (35%) Query: 178 RETLQHLEHTEQNLSRLEDIALELKSQLKTLKRQSEAAVQYKTLENQIRTLKIEILSFQA 237 ++L Q L + + A ++ E + L Sbjct: 105 DKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKAL 164 Query: 238 EKSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQAE 297 E ++ + ++ L + + + +E LE + L+ E Sbjct: 165 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALA 224 Query: 298 KKLSELKMTLEQKQSLFQQNSTTLVQLEQQKAQTKERLQLSELQLETLNSQLEEQTEALT 357 + ++L+ LE + +S + LE +KA + R E LE + + + Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 284 Query: 358 AVEHTAAEAEQNFASLQSQQRQAQQQFEQVKAQVEKQQQQKMQMSAQIEQLGKNVQRIEQ 417 +E A E A L+ Q + + ++ ++ ++ K Q+ A+ ++L + + E Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 344 Query: 418 QKETLQ 423 +++L+ Sbjct: 345 SRQSLR 350 Score = 42.4 bits (99), Expect = 1e-05 Identities = 48/312 (15%), Positives = 119/312 (38%), Gaps = 11/312 (3%) Query: 644 RIRLDEIEQVLQKQQPELQALDQIIVQQKDELGQLQVDLQQKQQVIKQKQKDLQQLDVQI 703 ++ + E AL+ + + L IK + + L + Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Query: 704 AKQQTAAQAFLLQKQQLKDQLAQLDTQLEEDAMQKDDLEIDLHALAMKLETILPDYKTLQ 763 A + A + + ++ L+ + ++ +LE L Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF-------STADS 280 Query: 764 FQVEELTEQLEEQQQVLQQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQITAQME 823 +++ L + + + + ++L N + ++ + L++++Q++ Q + Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 824 QAKKFVDPIQLELPNLESEFQQQFAQTEKLQKTWNEWQIELNSVQEKQQTLTDQRHQYQQ 883 ++ ++ +L +Q A+ +KL++ + +I S Q ++ L R ++ Sbjct: 341 ISEASRQSLRRDLDASREAKKQLEAEHQKLEE---QNKISEASRQSLRRDLDASREA-KK 396 Query: 884 QDEKLREQLEAKRLAWQAAKSDREHYQEQLKELNAELQTGLKIDLNEHQQKLEKVQKQFE 943 Q EK E+ +K A + + E ++ ++ AELQ L+ + ++KL K ++ Sbjct: 397 QVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELA 456 Query: 944 KIGAVNLAASQE 955 K+ A + SQ Sbjct: 457 KLRAGKASDSQT 468 Score = 40.8 bits (95), Expect = 3e-05 Identities = 34/268 (12%), Positives = 81/268 (30%), Gaps = 23/268 (8%) Query: 742 EIDLHALAMKLETILPDYKTLQFQVEELTEQLEEQQQVLQQQQQEREILRRNSTQTTQQI 801 L + + + + TL+ + +L+ + + + +E + + + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 802 ELLEKDISFLQSQYQQITAQMEQAKKFVDPIQLELPNLESEFQQQFAQTEKLQKTWNEWQ 861 I L+++ + +E A F ++ LE+E A+ L+K Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 862 IELNSVQEKQQTLTDQRHQYQQQDEKLREQLEAKRLAWQAAKSDREHYQEQLKELNAELQ 921 + K +TL ++ + + +L + LE A + + + + L A Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 922 TGLKIDLNEHQQKLEKVQKQFEKIGAVNLAASQEFEEVSQRFDELSHQIQDLENTVTQLK 981 + A S + L + LE +L+ Sbjct: 229 ----------------------DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 982 DAMKSIDQETRKLFMSTFDQINQELQNL 1009 A++ + + E L Sbjct: 267 KALE-GAMNFSTADSAKIKTLEAEKAAL 293 Score = 33.5 bits (76), Expect = 0.006 Identities = 39/241 (16%), Positives = 100/241 (41%), Gaps = 11/241 (4%) Query: 184 LEHTEQNLSRLEDIALELKSQLKTL-KRQSEAAVQYKTLENQIRTLKIEILSFQA--EKS 240 E+ L + + +++KTL ++ + LE + + A + Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 241 VRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQAEKKL 300 + + +L +++ + ++ DL+++ ++L + L+++ + +E Sbjct: 287 EAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR 346 Query: 301 SELKMTLEQKQSLFQQNSTTLVQLEQQKAQTKERLQLSELQLETLNSQLEEQTEALTAVE 360 L+ L+ + + QLE + + +E+ ++SE ++L L+ EA VE Sbjct: 347 QSLRRDLDASREAKK-------QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVE 399 Query: 361 HTAAEAEQNFASLQSQQRQAQQQFEQV-KAQVEKQQQQKMQMSAQIEQLGKNVQRIEQQK 419 EA A+L+ ++ ++ + K + E Q + + + A E+L K + + + + Sbjct: 400 KALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLR 459 Query: 420 E 420 Sbjct: 460 A 460 Score = 33.1 bits (75), Expect = 0.007 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 1/178 (0%) Query: 333 ERLQLSELQLETLNSQLEEQTEALTAVEHTAAEAEQNFASLQSQQRQAQQQFEQVKAQVE 392 L+L L N L++ + LT A E + S++ Q+ E KA +E Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLE 126 Query: 393 KQQQQKMQMSAQIEQLGKNVQRIEQQKETLQHQANQIQSQVHEDEQGELEQLQQQLCREI 452 K + M S K ++ E+ + + + + + L E Sbjct: 127 KALEGAMNFSTADSAKIKTLEA-EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 453 STLEAEIEQYVQRIEQAQQAHQVNKNQQQTLKTEIQVLLSEQKNLSQLVAKQSPKQNQ 510 + LEA + + +E A + + +TL+ E L + + +L + + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTA 243
>PF03309#Bvg accessory factor Length = 271 Score = 96.4 bits (240), Expect = 4e-26 Identities = 43/263 (16%), Positives = 97/263 (36%), Gaps = 34/263 (12%) Query: 4 LWLDIGNTRLKYWI----TENQQIIEH--AAELHLQSPADLLLGLIQHFKHQG--LHRIG 55 L +D+ NT + ++ ++++ + +L L + L Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAERLTGAS 62 Query: 56 ISSVLDTENNQRIQQILKWLEI-PVVFAKVHAEYAGLQCGYEVPSQLGIDRWLQ-VLAVA 113 S + + ++ + ++ P V + G+ + P ++G DR + + A Sbjct: 63 GLSTVPSVLHEVRVMLEQYWPNVPHVLIEPGVR-TGIPLLVDNPKEVGADRIVNCLAAYH 121 Query: 114 EEKENYCIIGCGTALTID-LTKGKQHLGGYILPNLYLQRDALIQNTK-----GIKIPDSA 167 + ++ G+++ +D ++ + LGG I P + + DA + + P S Sbjct: 122 KYGTAAIVVDFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALRRVELTRPRSV 181 Query: 168 FDNLNPGNNTVDAVHHGILLGLISTIESIMQQS----------PKKLLLTGGDAPLFAKF 217 G NTV+ + G + G ++ ++ + ++ TG APL Sbjct: 182 I-----GKNTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGADVAVVATGHTAPLVLPD 236 Query: 218 LQKYQPTVETDLLLKGLQQYIAH 240 L + + L L GL + + Sbjct: 237 L-RTVEHYDRHLTLDGL-RLVFE 257
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 5e-05 Identities = 66/356 (18%), Positives = 128/356 (35%), Gaps = 46/356 (12%) Query: 64 LMRPLGAIFLGAYVDKVGRRKGLIVTLSLMAIGTILITFVPGYETIGIIAPILVVIGRLL 123 LM+ A LGA D+ GRR L+V+L+ A+ ++ P ++ IGR++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 124 QGFSAGVESGGVSIYLAEIATDKNRGFITSWQSGSQQIAVVFAALLGYWLNTILTHAQVG 183 G + G Y+A+I R + S +V +LG + G Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM---------G 155 Query: 184 EWGWRIPFLI-----GCLIIPLIFLFRRTLEETEDFKAQKTHPSSKEIFSTLVSNWRIVL 238 + PF G + FL + + P +E + L S +R Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPES-------HKGERRPLRREALNPLAS-FRWAR 207 Query: 239 AGMMMSAMTTTTF-------YFITVYTTVYAKRTLEMSVTDSLLATVFVGLSNFFWLPMG 291 +++A+ F ++ R + T + F L + + Sbjct: 208 GMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMIT 267 Query: 292 GLLSDKIG-RRPVLVGITTLAIFTSYPVLSWLVSDISFSNLLITLAYFSFFFGMYNGTMV 350 G ++ ++G RR +++G+ +A T Y +L++ +++ LA + Sbjct: 268 GPVAARLGERRALMLGM--IADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLS 325 Query: 351 ATLAEVMPKRVRTVGFSLAFSLAAAIFGGMTPMACTFLVENTGNASTPAFWLMLAA 406 + E +++ G A + +I G P+ T + + W+ AA Sbjct: 326 RQVDEERQGQLQ--GSLAALTSLTSIVG---PLLFTAIYAASITTWNGWAWIAGAA 376
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.024 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 305 DRGFIFLLLIVSASGLALMAFRNAPYMALLLIFHLATVMTFFITMP 350 +R + L +I +G L+AF +MA ++ LA + I MP Sbjct: 276 ERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA---SGGIGMP 318
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 3e-14 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 18/176 (10%) Query: 7 KILDTAEKLFNENSFVGVGVDLIRDESGCSKTTMYTYYKNKNQLVKSVLVARDERFKQSL 66 ILD A +LF++ + I +G ++ +Y ++K+K+ L + + + Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 67 LGYVGDATG------LEAINKILDWHTNWFRQDFFKGCLFVR--AVAESNQDDQDIISIS 118 L Y G E + +L+ R+ +F + V E Q ++ Sbjct: 75 LEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLC 134 Query: 119 KAHKQWIKELIAANCNMPNGE--------ALSELIYTVIEGLISRFLVDGFDETLA 166 I++ + + + ++ I GL+ +L L Sbjct: 135 LESYDRIEQTLKH--CIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLK 188
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.038 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 293 RNELIPLLSEHFLQKTAKE 311 R E IP L HF+Q+ KE Sbjct: 313 RAEDIPDLVRHFVQQAEKE 331
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 52.5 bits (126), Expect = 1e-09 Identities = 65/396 (16%), Positives = 128/396 (32%), Gaps = 31/396 (7%) Query: 34 ALLFAYFAMVVDGIDIMLLSYSLTSLKAEFGLSTFQAGALGSA----SLAGMGIGGILGG 89 L+ + +D + I L+ L L + S G +L +LG Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 90 WACDKFGRVRTIANSVTFFSVATCLLGFTQSFEQFMALRFIGALGIGALYMACNTLMAEY 149 + D+FGR + S+ +V ++ R + + GA +A+ Sbjct: 66 LS-DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADI 123 Query: 150 VPTTYRTTVLGTLQTGQTVGYIAATLLAGAIIPDYGWRVLFFLTVVPAFVNIFLQRF-VP 208 R G + G +A +L G ++ + FF +N F +P Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVL-GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 209 EPKSWQLTKIESLQGKRQPKERVVVEKPKSSSIYKQIFNNFKHRKMFLLWMTTAFFLQ-F 267 E +G+R+P R P +S + + + M F +Q Sbjct: 183 ESH----------KGERRP-LRREALNPLASFRWARGM------TVVAALMAVFFIMQLV 225 Query: 268 GYYGINNWMPSYLETEVHMNFKNLT-SYMVGSYTAMILGKILAGYLADKFNRRAVFVFGT 326 G W+ + E H + + S + ++ G +A + R + G Sbjct: 226 GQVPAALWV-IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGM 284 Query: 327 IASAVFLPIIIFFNTPDNILYLLITFGFLYGIPYGVNATYMAESFSTDVRGTAIGGAYNI 386 IA ++ F +++ GI ++ + +G G + Sbjct: 285 IADGTGYILLAFATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAAL 343 Query: 387 GRVGAAIAPATIGFL--ASGGTFTMAFIVMGAAYFV 420 + + + P + AS T+ + GAA ++ Sbjct: 344 TSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYL 379
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 212 bits (540), Expect = 3e-63 Identities = 110/459 (23%), Positives = 203/459 (44%), Gaps = 48/459 (10%) Query: 15 RTFAIISHPDAGKTTMTEKLLLWGKAIQVAGMVKSRKSDRAATSDWMEMEKERGISITTS 74 +++H DAGKTT+TE LL AI G V +D +E++RGI+I T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG----TTRTDNTLLERQRGITIQTG 59 Query: 75 VMQFPYKGHTINLLDTPGHEDFSEDTYRTLTAVDSALMVIDGAKGVEERTIKLMEVCRMR 134 + F ++ +N++DTPGH DF + YR+L+ +D A+++I GV+ +T L R Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 135 DTPIISFVNKMDREIREPLELLDEIENVLNIRCVPITWPLGMGRDFAGVYNILEDKLYVY 194 P I F+NK+D+ + + +I+ L+ V K+ +Y Sbjct: 120 GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------KVELY 161 Query: 195 KAGFGSTITDIEVRDGY--NHADIREKVGELAWASFEESLELVQMANEPLDRELFLQGKQ 252 + T+ E D + D+ EK +SLE +++ E + F Sbjct: 162 PNMCVTNFTESEQWDTVIEGNDDLLEKYMS------GKSLEALELEQE--ESIRFHNCSL 213 Query: 253 TPVLFGTALGNFGVDHVLDAFMNWAPEPKAHPTQERMVEAKEEGFSGFVFKIQANMDPKH 312 PV G+A N G+D++++ N + G VFKI+ K Sbjct: 214 FPVYHGSAKNNIGIDNLIEVITNKFYSS---------THRGQSELCGKVFKIE--YSEK- 261 Query: 313 RDRIAFMRICSGKYEKGLKMNHVRIGKEVRISDALTFLAGEREHLEEAWPGDIIGLHNHG 372 R R+A++R+ SG + K ++I++ T + GE +++A+ G+I+ L N Sbjct: 262 RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEF 320 Query: 373 TIQIGDTFTSGENLHFTGIPHFAPEMFR-RVRLKDPLKSKQLQKGLKELSEEGAT-QVFM 430 +++ + L + + V P + + L L E+S+ + ++ Sbjct: 321 -LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYV 379 Query: 431 PQISNDLIVGAVGVLQFDVVAYRLKEEYKVDCVYEPVSV 469 ++++I+ +G +Q +V L+E+Y V+ + +V Sbjct: 380 DSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTV 418
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 5e-16 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 18/171 (10%) Query: 1 MSKRETIITTAMTLFNQKSYTSIGVDKIIAESKVAKMTFYKYFSSKEVLIEECLRR---R 57 R+ I+ A+ LF+Q+ +S + +I + V + Y +F K L E Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 58 ILEVQTSLLDKVNSVDDPLNKLKSIFNWYIDWINTED----FSGCLFKKATIEVLQLYPS 113 I E++ K DPL+ L+ I ++ TE+ +F K E + Sbjct: 70 IGELELEYQAKFP--GDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC--EFVGEMAV 125 Query: 114 IKKQVNKYREWIYSLVLSIFLE-------LEIEDPKVLSSLFLNIIDGLII 157 +++ Y + + + + I GL+ Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 2e-10 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 12/163 (7%) Query: 12 SVLHKSRYLFNKHGFHNVGVDRIVREAEVPKASFYNYFHSKERLIEICLHFQKDVLKEQV 71 +L + LF++ G + + I + A V + + Y +F K L + + E Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 72 HSI---IYIQKDLILREKLKKIFFLHTSLDGYYHLLFRAIFEIEKLYPAAYQVVIQYRHW 128 +LRE L I L +++ L I + + VV Q + Sbjct: 75 LEYQAKFPGDPLSVLREIL--IHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 129 LTTEVYKLLLTVKKDATKS-------DSDMFLFTLEGAIIQLL 164 L E Y + K ++ + + G I L+ Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.2 bits (73), Expect = 0.008 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 18/147 (12%) Query: 45 LLLNGLLLAAAISIVHIVGMHAYHLFEAASSNVPLITLAFGISAVLSSVAIWLTSRFTLP 104 LLL G+++ S++ VG H++ + + A + V+ VA ++ Sbjct: 81 LLLFGIIINCFGSVIGFVG-HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGK 139 Query: 105 IFRLILSSIIMGIGISASY---YVSMLGWNIDIYKKDYTSFLILFSVLIAMSGSGLAFLL 161 F LI S + MG G+ + + W S+L+L ++ ++ L Sbjct: 140 AFGLIGSIVAMGEGVGPAIGGMIAHYIHW----------SYLLLIPMITIITV----PFL 185 Query: 162 AYKLKESERHRISLKLAFAVMMTLSIM 188 LK+ R + + ++M++ I+ Sbjct: 186 MKLLKKEVRIKGHFDIKGIILMSVGIV 212
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 27.9 bits (62), Expect = 0.026 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 3 SKHVDIYIGKLNDFLKRKQH-DFPDFRTFN-EYKKQQIKSIRNRLIVEKLQLISTELEFA 60 + +I F+K K + Y K++ K + + + +++ E++ Sbjct: 178 LESETTHISNWLIFVKSKNDPFLVGLKNSMVTYLKKKEKPADYYIFHDFVSVMAVSKEYS 237 Query: 61 KHEHGKPYLLNHTLHFNHSHSQQYYALALSERIKDIGIDVEELDRKVRLDSLAQHAFHS 119 K+ PY+ N H Y ++ IK V++L K+ ++L ++ ++ Sbjct: 238 KYWKEIPYVNNVNPHMLQYLGNLPYDNSMFNYIKSTS-PVQKLTYKLDYNNLKRNTYYD 295
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.7 bits (72), Expect = 0.007 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 28/141 (19%) Query: 177 LRLAIIGRPNVGKSTLVNRLL----GEDRVVAFDQPGTTRDSIYIPFER----------- 221 + + ++ + GK+TL LL + + D+ T D+ + +R Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 222 --EGRKYTLIDTAGVRRKGKVDEMIEKFSIVKTLQAMKDAHVVVVVVDAREGIVEQDLHL 279 E K +IDT G +D + E + ++L + A ++++ A++G+ Q L Sbjct: 64 QWENTKVNIIDTP-----GHMDFLAE---VYRSLSVLDGA---ILLISAKDGVQAQTRIL 112 Query: 280 IGYALEAGRAMVIAINKWDNM 300 + G + INK D Sbjct: 113 FHALRKMGIPTIFFINKIDQN 133
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 0.005 Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 293 AYGAPKAISSFVIPTGYSFNLDGSTLYQSIAAIFIAQLYGI 333 + A ++ + TGY + +T+++S I + + Sbjct: 186 SNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAM 226
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.2 bits (65), Expect = 0.027 Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 333 EQTQADEEEAQAAIQEGIAKAEKEEKIVTDEIAQPYKE 370 +Q Q +++AQA QE +A A +D+IAQ YK+ Sbjct: 343 QQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKD 380
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 29.1 bits (65), Expect = 0.028 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 288 LDEIEDMIRNSNQWAKVVPNTREASM-----TDLTPVAVT-GTLTVPVGR 331 + EIE++ ++ AKVV N R ++ ++ VAV+ GTLTV V Sbjct: 247 MAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTE 296
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 31.5 bits (71), Expect = 0.007 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 23/145 (15%) Query: 150 IALNLPESTQYTPTENTSNVAETTGNEH----NLNISTGTA-----PALNSSSPAPVAPF 200 I NL + + +NT+N TT NE + ++T A LNS+ +AP Sbjct: 25 IVGNLVTANADSNKQNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDMIKLAP- 83 Query: 201 TEKPSTQTPQPTIATMNIESSAVEKQPSTSLKSSGGNQTTTVKKAAQSKTAQQKNVLSKN 260 M +ES+ E++ S K S + T + S + VL+KN Sbjct: 84 -------------KEMPLESAEKEEKKSEDNKKSEEDHTEEINDKIYSLNYNELEVLAKN 130 Query: 261 ASKKQKISTYKGPAPTGKYIVQRNE 285 + +G K+IV + Sbjct: 131 GETIENFVPKEGVKKADKFIVIERK 155
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 34.1 bits (78), Expect = 4e-04 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 21/92 (22%) Query: 13 IQYRGWQTQQPGVASVQETI--ERVLSKIADEPITL-HGAGRTDAGVHATNMVAHFDTNA 69 I YR + PGVA++ + + + + ++ + + A R A + A NA Sbjct: 199 IHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRASA---QARVEADPSLNA 255 Query: 70 I----RPERGWIMGANSQLPKDISIQWIKQMD 97 I PER + + I +D Sbjct: 256 IIVRDSPER-----------MPMYQRLIHALD 276
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 82.6 bits (204), Expect = 3e-18 Identities = 81/391 (20%), Positives = 128/391 (32%), Gaps = 103/391 (26%) Query: 406 IMGHVDHGKTSLLDRIRRSKVAAGEAG------------------GITQHIGAYHVETDK 447 ++ HVD GKT+L + + + A E G GIT G + + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 448 GIITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTAEAIDHARAAGTPIIVAI 507 + +DTPGH F + R D +L+++A DGV QT R G P I I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 508 NKMDKESADPDRVL---------------------NELTTKEIVPEEW------------ 534 NK+D+ D V N T E+W Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 535 -----------------------GGDVPVAKVSAHTGQGIDELLDLILIQSELMELKASA 571 PV SA GID L+++I ++ Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245 Query: 572 EGAAQGVVIEARVDKGRGAVTSILVQNGTLNIGDLVLAGSSYGRVRAMSDENGKPIKSAG 631 + G V + + R + I + +G L++ D V +S++ I Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVR----------ISEKEKIKITEMY 295 Query: 632 PSIPVEILGLPEAPMAGDEVLVVNDEKKAREVADARADREREKRIERQSAMRLENIMASM 691 SI E+ + +A +G+ V++ N+ K V + +RIE Sbjct: 296 TSINGELCKIDKA-YSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPL----------- 343 Query: 692 GKKDVPTVNVVLRTDVRGTLEALNAALHELS 722 P + + E L AL E+S Sbjct: 344 -----PLLQTTVEPSKPQQREMLLDALLEIS 369
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 96.2 bits (239), Expect = 2e-29 Identities = 45/98 (45%), Positives = 66/98 (67%) Query: 1 MHSFVLVVHIILAVLMIALILVQHGKGADAGASFGGGGAATVFGASGSGNFLTRVTAILT 60 M+ +LVV +I+A+ ++ LI++Q GKGAD GASFG G +AT+FG+SGSGNF+TR+TA+L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 61 ALFFVTSLTLAIFAKKQTTEAYSLKTVQTTAPAQTTSP 98 LFF+ SL L +T + + + A + T P Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQP 98
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 398 bits (1024), Expect = e-139 Identities = 119/409 (29%), Positives = 219/409 (53%), Gaps = 12/409 (2%) Query: 9 MPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEG-------L 61 M + Y+ +D +G K +G A + A+ LR++G+ ++ E R + + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 62 FKKKVTTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTF 121 K +++T D+ + TRQLAT++ A +PL + + VA+ E P + +++ ++ +V G + Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 122 ASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKIKKAMKYPATVI 181 A A++ +P F+ L+C++V +GE SG L+ +L+R+A Y E+ + ++ +I++AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 182 VVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEY--WFIMIIAIGAVI 239 VVAI V IL+ VVP + F LP T++++ MS ++ + W ++ + G + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 240 AAFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALEST 299 + R +K R + L LP+ G + ARY+RTL+ A+ VPL+ A+ + Sbjct: 241 FRVM---LRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRIS 297 Query: 300 AGATNNVIYEKAVMKIREDVATGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKV 359 +N + + V G L A+ + FP M M+A GE SG LDSML++ Sbjct: 298 GDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERA 357 Query: 360 ATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLPIFQMGSVV 408 A + E + + + EPL++ + +V +V+A+ PI Q+ +++ Sbjct: 358 ADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 320 bits (823), Expect = e-112 Identities = 148/286 (51%), Positives = 188/286 (65%), Gaps = 2/286 (0%) Query: 1 MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPII 60 M ++ + V L SL IGSFLNVVI+R P M+E++WQ E + NP+ + Sbjct: 1 MALLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGV 60 Query: 61 DHEKLTLSKPASSCPACQQPIRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLC 120 D L P S CP C PI +NIP++SWL LRG+C CQ PIS RYP++ELLT L Sbjct: 61 DEPPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALL 120 Query: 121 SLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFNIYTS 180 S+ V M P L L+LTWVL+ALTFID D LLPD+ TLPL GL N + S Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVS 180 Query: 181 PNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL 240 A+ G + G+L LW +Y+ FK++TGKEGMGYGDFKLLAALGAW+G LP+++LLSSL Sbjct: 181 LGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL 240 Query: 241 LGAIIGIILLKLRNDN--QPFAFGPYIAIAGWVAFLWGDQIMKIYL 284 +GA +GI L+ LRN + +P FGPY+AIAGW+A LWGD I + YL Sbjct: 241 VGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 33.6 bits (76), Expect = 6e-04 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%) Query: 30 LKGRDDQRLQKILQLAEPFGISVQK-ASRDSLEKLAGL-PFHQGVVAAVRPHPTLNEKDL 87 L+ + ++IL+L ISV A D L + L P +V +R L KDL Sbjct: 86 LEDEALPKAKQILKL-----ISVHGGALEDFLRQARSLFPDPSDLVLVLRE--LLRRKDL 138 Query: 88 DQLLAETPDALLLALDQVTDPHNLGACIRTA 118 ++++ + ++LL +++ TDP L A I A Sbjct: 139 EEIVRKKLESLLKHVEEQTDPKTLKAGINCA 169
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 75.3 bits (185), Expect = 2e-20 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 5/126 (3%) Query: 21 SAEVVRSGSPLDIVLWVIAIALLLSATMVNQHLPAYWAPANDVWVRVGVIFACIVVALGL 80 + E SG L+ + WV+ +ALLL A + N P +R + I A G+ Sbjct: 4 NTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLP-----LRALAVVILIAAAGGV 58 Query: 81 LYATHQGKGFVRLLKDARVELRRVTWPTKQETVTTSWQVLLVVVVASLVLWCFDYGLGWL 140 T +GK V ++AR E+R+V WPT+QET+ T+ V V V SL+LW D L L Sbjct: 59 ALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRL 118 Query: 141 IKLIIG 146 + I G Sbjct: 119 VSFITG 124
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 427 bits (1100), Expect = e-142 Identities = 226/692 (32%), Positives = 337/692 (48%), Gaps = 73/692 (10%) Query: 12 ALLAAAPLIATVSSSAYAQTWKINLRDADLTAFINEVADITGKNFAVDPRVRGNVTVISN 71 LL A L+ A A+ + + + D+ FIN V+ K +DP VRG +TV S Sbjct: 13 TLLIFAALLFR---PAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSY 69 Query: 72 KPLNKDEVYDLFLGVLNVNGVVAIPSGN-TIKLVPDSNVKNSGIPYDSR-NRVRGDQIVT 129 LN+++ Y FL VL+V G I N +K+V + K + +P S GD++VT Sbjct: 70 DMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVT 129 Query: 130 RVIWLENTNPNDLIPALRPLMPQFAHMAAI--AGTNALIVSDRAANIYQLENIIRNLDGT 187 RV+ L N DL P LR L + + +N L+++ RAA I +L I+ +D Sbjct: 130 RVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNA 189 Query: 188 GQNDIEAITLQSSQAEEIITQLEAMSATGASKDFSGARI-RIIADNRTNRILIKGDPQTR 246 G + + L + A +++ + ++ + G+ + ++AD RTN +L+ G+P +R Sbjct: 190 GDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR 249 Query: 247 KRIRHMIEMLDVPSADRLGGLKVFRLKYASAKNLSEILQGLVTGQAVSSSNNSNNSSNSS 306 +RI MI+ LD A G KV LKYA A +L E+L G Sbjct: 250 QRIIAMIKQLDRQQA-TQGNTKVIYLKYAKASDLVEVLTG-------------------- 288 Query: 307 NPINSLIGNNQNSGSNTSGSSGTSISTPAINLNGNSNSSNQNNITSFNQNGVSIIADNAQ 366 I + S + + I A Sbjct: 289 ------ISSTMQSEKQAAKPVAAL------------------------DKNIIIKAHGQT 318 Query: 367 NSLVVKADPQLMREIESAIQQLDVRRQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIG 426 N+L+V A P +M ++E I QLD+RR QVL+EA I EV D LG+QWA N G Sbjct: 319 NALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA----NKNAG 374 Query: 427 LINFTNAGSSLASLAAGYLTGGAAG-LGSAIGAGSSIALGKYKEGADGSRQLYGALIQAL 485 + FTN+G +++ AG G + S++ + S G A + + L+ AL Sbjct: 375 MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNG---IAAGFYQGNWAMLLTAL 431 Query: 486 KENTASNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLK 545 +T +++L+TPSIVT+DN EA VGQ VP +TGS TT+ N + TVERK VG+ LK Sbjct: 432 SSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGD--NIFNTVERKTVGIKLK 489 Query: 546 VIPHIGENGTVRLEIEQEVSNVQASKGQAA---DLITNKRAIKTAVLAEHGQTVVLGGLV 602 V P I E +V LEIEQEVS+V + + N R + AVL G+TVV+GGL+ Sbjct: 490 VKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLL 549 Query: 603 SDDVEFNRQGIPGLSSIPYLGRLFRSDTRSNTKRNLLVFIHPTIVGDANDVRRLSQQRYN 662 V +P L IP +G LFRS ++ +KRNL++FI PT++ D ++ R+ S +Y Sbjct: 550 DKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYT 609 Query: 663 QLYSLQL-AMDKNGNFAKLPEQVDDIYNQKMT 693 Q K N A L + + +IY ++ T Sbjct: 610 AFNDAQSKQRGKENNDAMLNQDLLEIYPRQDT 641
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 62.7 bits (152), Expect = 1e-13 Identities = 57/274 (20%), Positives = 98/274 (35%), Gaps = 33/274 (12%) Query: 19 LSVVVLAILILWLCWKLASFFWLVIAP---PQLMQFDRVELGSQQPQIPNIST-FSLFNE 74 + ++ +L+L C +LA FW + P P QQP N T F + E Sbjct: 14 IRRILFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPAQARQQPVTLNDFTLFGVSPE 73 Query: 75 P----------SANAAQESVNLELQGVMVGYPNRFSSAVIKIDNTAERYRVGETIGSTSY 124 +N ++NL L GVM G + S A+I DN V E + + Sbjct: 74 KNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGVNEEVPGYNA 133 Query: 125 QLAEVYWDHVVLSQGNGSTRELQFKGLPNGLYQPMTPDASQQSATPSQPTEPMNTAQQAL 184 ++ + D VVL G Y+ + + + S + P +N Q Sbjct: 134 KIVSIRPDRVVLQY--------------QGRYEVLGLYSQEDSGSDGVPGAQVNEQLQQR 179 Query: 185 GQAIQQMQGNREQYLRDMGVSGNSGEGYEVTERTPTALRNKLGLRPGDRIVSLNGQTVGQ 244 + + D N +GY + + ++GL+ D V+LNG + Sbjct: 180 ASTTMSDYVSFSPIMND-----NKLQGYRLNPGPKSDSFYRVGLQDNDMAVALNGLDLRD 234 Query: 245 GQTDVQLLEQARRAGQVKIEIKRGDQVMTIQQNF 278 + + +E+ + ++R Q I F Sbjct: 235 AEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 81.4 bits (201), Expect = 4e-20 Identities = 49/225 (21%), Positives = 79/225 (35%), Gaps = 21/225 (9%) Query: 11 VVSTHPIYLIAKEITKGVEEPQLLLQ-GQSGHDVQLTPAHRKAINDASLVIWLGKAHE-- 67 V + I I K I + ++ GQ H+ + P K ++A L+ + G E Sbjct: 36 VATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETG 95 Query: 68 --APLNKLLSN-----NKKAIALLDSGILSILPQRNTRGAALPNTVDTHVWLEPNNAVRI 120 A KL+ N NK A+ S + ++ G D H WL N + Sbjct: 96 GNAWFTKLVENAKKTENKDYFAV--SDGVDVIY---LEGQNEKGKEDPHAWLNLENGIIF 150 Query: 121 GFFIAALRSQQHPENKAKYWNNANTFARNMLQAAQAYDS-----SSNGKPYWSYHDAYQY 175 IA S + P NK Y N + + + + + K + A++Y Sbjct: 151 AKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKY 210 Query: 176 LERSLNLKFAGALTDDPHVAPTAAQIKYLND-SRPKAQMCLLAES 219 ++ + A + T QIK L + R L ES Sbjct: 211 FSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVES 255
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.002 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%) Query: 31 KVDFALHENEIVTLIGPNGAGKSTLIKVLLG 61 K D+++ L G G GKSTLI L+G Sbjct: 594 KFDYSV------VLEGTGGIGKSTLINTLVG 618
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 29.8 bits (67), Expect = 0.031 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 124 GVFISYPDRDVIDDILQNVNKNNVKVIVITDGERILGLGDQGIGGMGIPI 173 G I+Y R+ + + + +N +KV I E L G G M +P+ Sbjct: 360 GEIIAY-SRNHVTN--KLFEENGIKVHRIPSSE--LSRGRGGPRCMSMPL 404
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.032 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 22/76 (28%) Query: 92 NADQRF------------AILDQIQAQKESFGRSQSNAAKKIQVEFVSANPTSSLHVGHG 139 AD+RF A+L ++ A E R + + V +P S H+ G Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDL----VDYSPVSEKHLADG 112 Query: 140 RGAAYGMTVANLLEAT 155 MTV L A Sbjct: 113 ------MTVGELCAAA 122
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 28.7 bits (64), Expect = 0.035 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 17/154 (11%) Query: 7 IGAAGYIAPRHLKAIKET-GNTLAVAMDVNDSVGIMDSHFPEAEFFTEFEE-----FEAY 60 I G + IKE + + V + ++F E+E + E E Y Sbjct: 130 IDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLEKY 189 Query: 61 VEDQKLKGEKLD-----YVAICS--PNYLHAPHMKYALKNGIDVICEK---PLVLNSEDL 110 + + L+ +L+ CS P Y + + N I+VI K +L Sbjct: 190 MSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQSEL 249 Query: 111 NMLAEYEKQYGAKVNSILQLRLHPSIIALRDKVQ 144 ++ +Y K + +RL+ ++ LRD V+ Sbjct: 250 CGKV-FKIEYSEKRQRLAYIRLYSGVLHLRDSVR 282
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.004 Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 23/153 (15%) Query: 246 QGQDKEHITKVLNAILATYSAQ------NIERRSAESA----------QTLKFLDEQLPD 289 ++ +T ++ +T+ Q N++++ AE + +L D Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Query: 290 LKKQLDDAERQFNKFRQQYNT-VDVTKESELYLTQSITLETKKAELEQKQAEMAAKYTAE 348 L + +Q N V+ E +Y +Q +E++ +++ + + Sbjct: 240 FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFK-- 297 Query: 349 HPAMREINGQLAAINKQIGELNSTLKQLPDVQR 381 EI +L IG L L + + Q+ Sbjct: 298 ----NEILDKLRQTTDNIGLLTLELAKNEERQQ 326
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 144 bits (365), Expect = 5e-45 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 10/218 (4%) Query: 29 TTEVGRKADKNASPIQKISYVLGYEVAQQTPP---ELDTKAFVQGIHDARNKQPSAYTQE 85 T A + K+SY +G ++ + +++ +G+ D + T+E Sbjct: 17 TAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEE 76 Query: 86 DLKAAVAAYEKELQQK--MQHQDKPEQAGTATDSADAQFLAENKTKAGVKTTVSGLQYII 143 +K ++ ++K+L K + K E+ D+ FL+ NK+K G+ SGLQY I Sbjct: 77 QMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDA----FLSANKSKPGIVVLPSGLQYKI 132 Query: 144 TKEGTGKQPTAQSIVKVHYEGRLINGQVFDSSYKRGQPVEFPLNQVIPGWTEGLQLMKEG 203 GTG +P V V Y G LI+G VFDS+ K G+P F ++QVIPGWTE LQLM G Sbjct: 133 IDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAG 192 Query: 204 GKATFFIPSNLAYGPQELPG-IPANSTLIFDVELISVK 240 F+P++LAYGP+ + G I N TLIF + LISVK Sbjct: 193 STWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 178 bits (452), Expect = 4e-58 Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 11 VIAASTMSLSV---FAAAPITNKSPAKDQFSYSYGYLMGRNNTDALTDLNLDIFYQGLQE 67 ++ A+ M L++ AA T+ + KD+ SYS G +G+N + D+N D+ +G+Q+ Sbjct: 5 LVTAAIMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQD 64 Query: 68 GAQNKTARLTDEEMAKAINDYKKTLEAKQLVEFQKQGQQNAQAGAAFLAENAKKSGVIAT 127 G LT+E+M ++ ++K L AK+ EF K+ ++N G AFL+ N K G++ Sbjct: 65 GMSGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVL 124 Query: 128 KSGLQYQVLKEGTGKTPKATSRVKVNYEGRLLDGTVFDSSIARNHPVDFQLNQVIAGWTE 187 SGLQY+++ GTG P + V V Y G L+DGTVFDS+ P FQ++QVI GWTE Sbjct: 125 PSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTE 184 Query: 188 GLQTMKEGGKTRFFIPAKLAYGEVGAGDSIGPNSTLIFDIELLQV 232 LQ M G F+PA LAYG G IGPN TLIF I L+ V Sbjct: 185 ALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.3 bits (71), Expect = 0.012 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 218 IPPKVDFKHEGVERILKL---MLPALFGVSVTQINLLLNTIWASFMQDGSVSWLYSAERM 274 +P + + G+ +L PAL +S + L L ++ S+ SV M Sbjct: 850 LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV--------M 901 Query: 275 TELPLGLIGVAIGTVILPSLSARHAEQDQAKFRSMIDWAAKV--IVLVGLPASIALFMLS 332 +PLG++GV + + F D V + +GL A A+ ++ Sbjct: 902 LVVPLGIVGVLLAATL---------------FNQKNDVYFMVGLLTTIGLSAKNAILIVE 946 Query: 333 ----------TPIIQALFQRGEFDLRDTQMTALALQCMSAGVISFML 369 +++A LR MT+LA GV+ + Sbjct: 947 FAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLA---FILGVLPLAI 990
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 28.9 bits (64), Expect = 0.012 Identities = 9/45 (20%), Positives = 16/45 (35%) Query: 58 VNALISAYDNTVQVTWLKQEGDRVAANEAFLKLAGSARSLLTVER 102 +N + A + T + +R KL+ L+ V R Sbjct: 85 INQIAKAANRTHDPAYHSFMAERKVLGLELSKLSAVLAPLMEVSR 129
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 6 ERKQQSRQALLDAALHLSTSGRSFSSISLREVAREVGLVPTAFYRHFQDMDELGKELVDQ 65 + Q++RQ +LD AL L S + SS SL E+A+ G+ A Y HF+D +L E+ + Sbjct: 7 QEAQETRQHILDVALRL-FSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 66 VALHLKSVLHQL 77 ++ + + Sbjct: 66 SESNIGELELEY 77
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 8e-12 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 12 RKEKILSVAEKLLLENN-QEITLDELVAELDIAKGTLYKHFRSKNELLLELIIQNEKQIL 70 ++ IL VA +L + +L E+ + +G +Y HF+ K++L E+ +E I Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 71 EISQ 74 E+ Sbjct: 72 ELEL 75
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 28.6 bits (64), Expect = 0.014 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%) Query: 63 EPHMQTWLKQIPSDVRFVRTPAAMNKVWEQGARTYYTSEALGVRKRTHL 111 E + +P D R TPA+M R TS+ L R + L Sbjct: 162 ETELNEA---LPGDARDTTTPASMAATL----RKLLTSQRLSARSQRQL 203
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.4 bits (216), Expect = 8e-23 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 6/203 (2%) Query: 13 LKDRIILITGAGDGIGRAAALSYALHGATVVLHGRTLNKLEVIYDEIEGLGAPQPAILPL 72 ++ +I ITGA GIG A A + A GA + KLE + ++ A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA-FPA 64 Query: 73 QLSSASDRDYDFLVSTLEKQFGRLDGILHNAGILGERVELAH-YPAEVWDDVMAVNLRAP 131 + ++ D + + +E++ G +D +++ AG+L R L H E W+ +VN Sbjct: 65 DVRDSAA--IDEITARIEREMGPIDILVNVAGVL--RPGLIHSLSDEEWEATFSVNSTGV 120 Query: 132 FALTQALLPLLQKSENASVVFTSSGVGREARALWGAYSVSKVAIEAVSKIFAAEHTYPNI 191 F ++++ + + S+V S R AY+ SK A +K E NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 192 RFNCINPGATRTAMRAKAYPEED 214 R N ++PG+T T M+ + +E+ Sbjct: 181 RCNIVSPGSTETDMQWSLWADEN 203
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.014 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 367 RSAEIACVAVHPSYRKSNRGSQILQFLEEKAKQQGIRQLFVLTTR----TAHWFLEHGFH 422 A I +AV YRK G+ +L E AK+ L + T H++ +H F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 423 QVSVD-----DLPNAR-QALYNYQR 441 +VD + P A A++ Y + Sbjct: 148 IGAVDTMLYSNFPTANEIAIFWYYK 172
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 40.8 bits (95), Expect = 4e-06 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 251 TLAHEFGHALGLKHTDDPKSLMYPLLREQDIHNFKLTNSDLDLLATLYG 299 +AHE GH LG +HTD+ K LMY H L+ ++D++A G Sbjct: 353 VMAHELGHILGAEHTDNSKDLMYATFTGYLSH---LSEKNMDIIAKNLG 398
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 36.2 bits (83), Expect = 1e-04 Identities = 13/24 (54%), Positives = 17/24 (70%) Query: 253 TIAHELGHALGLKHSDQPGALMYS 276 +AHELGH LG +H+D LMY+ Sbjct: 353 VMAHELGHILGAEHTDNSKDLMYA 376