PredictBias

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 43.2 bits (102), Expect = 1e-06

		 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 8/52 (15%)

		

		Query: 352 TLNAAKALGIEDTVGSLVVGKQADFCLWDIATPAQLAYSYGVNPCKDVVKNG 403

		           T+N A A G+   +GSL VGK+AD  LW+   PA     +GV P   V+  G

		Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLVLWN---PAF----FGVKP-DMVLLGG 453

		

		

		

		 Score = 32.8 bits (75), Expect = 0.002

		 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

		

		Query: 23  YGAITNAAIAVKDGKIAWLGPRSE---LPAFDVL---SIPVYRGKGGWITPGLIDAHTHL 76

		           +  I  A I +KDG+IA +G        P   ++      V  G+G  +T G +D+H H 

		Sbjct: 80  HWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHF 139

		

		Query: 77  I 77

		           I

		Sbjct: 140 I 140

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  126 bits (318), Expect = 1e-37

		 Identities = 85/257 (33%), Positives = 126/257 (49%), Gaps = 15/257 (5%)

		

		Query: 3   SSNNLQGKVAFVQGGSRGIGAAIVKRLASDGAAVAFTYVSSEAQSQLLVDEVITHGGQAI 62

		           ++  ++GK+AF+ G ++GIG A+ + LAS GA +A    + E   + +V  +      A 

		Sbjct: 2   NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL-EKVVSSLKAEARHAE 60

		

		Query: 63  AIKADSTEPEAIRRAIRETKAHFGGLDIIVNNAGTLIWDSIENLTLEDWERTINTNVRSV 122

		           A  AD  +  AI       +   G +DI+VN AG L    I +L+ E+WE T + N   V

		Sbjct: 61  AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120

		

		Query: 123 FVASQEAALHMND--GGRIINIGSTNAERIPFVGGAIYGMSKSALVGLAKGLARDLGPRA 180

		           F AS+  + +M D   G I+ +GS N   +P    A Y  SK+A V   K L  +L    

		Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179

		

		Query: 181 ITVNNIQPGPVDTDMN-----PDNGD------SSEPVKAMGALGRFGKAEEIASFVAFIA 229

		           I  N + PG  +TDM       +NG       S E  K    L +  K  +IA  V F+ 

		Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239

		

		Query: 230 GPEAGYITGASLMIDGG 246

		             +AG+IT  +L +DGG

		Sbjct: 240 SGQAGHITMHNLCVDGG 256

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 33.1 bits (75), Expect = 0.005

		 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

		

		Query: 28  TGWL-VNDNHPPAKVRFMLTGEVDPATNTLPAVLEVQLEGDWKTYWRSPGEGGIAPTIKW 86

		            G L V       + RF+LTG  +   +       + L G    + R     GI+ T K 

		Sbjct: 664 NGNLNVTFKGKSEQNRFLLTGGTNLNGDLTVEKGTLFLSGRPTPHARD--IAGISSTKKD 721

		

		Query: 87  DGSHNLQQV----DWRWPAPEEFSLLGLQTFGYKGNTTF----PLTIKVDDIAASTQLRG 138

		                  +V    DW              T    GN +      +     +I AS + + 

		Sbjct: 722 PHFAENNEVVVEDDW------INRNFKATTMNVTGNASLYSGRNVANITSNITASNKAQV 775

		

		Query: 139 KVTLSTCTTICVLTDYQMSLDFTPNAL 165

		            +   T  T+CV +DY   +  T + L

		Sbjct: 776 HIGYKTGDTVCVRSDYTGYVTCTTDKL 802

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 28.6 bits (64), Expect = 0.007

		 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

		

		Query: 78  AKIQALEAKLVERQNELTQTVKEGRPMDKVSKKQAKVAEVEAELAKAREELER 130

		           ++I + + +           +     +DK+ +    +  +  ELAK  E  + 

		Sbjct: 280 SEILSAKEEYQLVTQLFKNEI-----LDKLRQTTDNIGLLTLELAKNEERQQA 327

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 36.0 bits (83), Expect = 3e-04

		 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 24/153 (15%)

		

		Query: 301 QLAQSRQTQYRVPFYAQQDGVVETLSIR-DGMYIEPSTEAMSLV-DLSKVWVIADVFENE 358

		           +LA++ + Q      A     V+ L +  +G  +  +   M +V +   + V A V   +

		Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKD 376

		

		Query: 359 QSWIAKGQKAEVAVPAMNIR---GIEGTIDYIYPE------LDPVTRSLRVRVVLNNTNV 409

		             +I  GQ A + V A        + G +  I  +      L  V   +   +  N  + 

		Sbjct: 377 IGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVII-SIEENCLST 435

		

		Query: 410 DLRPKTLAKVSLFGGPNRDVLVIPQEALIQTGK 442

		             +      + L  G       +   A I+TG 

		Sbjct: 436 GNKN-----IPLSSG-------MAVTAEIKTGM 456

		

		

		

		 Score = 35.2 bits (81), Expect = 6e-04

		 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

		

		Query: 202 LWKFVETVGQVDYNESQITH------IHARVTGWVEKLMVKSMGDTVKKGQLLYELYSP- 254

		           +   +  V  V     ++TH      I       V++++VK  G++V+KG +L +L +  

		Sbjct: 73  ILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE-GESVRKGDVLLKLTALG 131

		

		Query: 255 ---DLVNAQDDYLLALDTAKTSGNPRYQDLVRRAGL-RLSFLGFNDEQIKQLAQSRQ 307

		              D +  Q   L A          RYQ L R   L +L  L   DE   Q     +

		Sbjct: 132 AEADTLKTQSSLLQARLEQT-----RYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 31.1 bits (70), Expect = 0.028

		 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

		

		Query: 712 NRLHSKKQFGYLIDYRGILKELDTTIEKYQDLAERTQGGFDIDD--LKGLYNRMDTEYKK 769

		           + L +    G  +   G+ +E D  I      A+    G       +  + N + T    

		Sbjct: 45  STLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSS 104

		

		Query: 770 LPGLHSDLWAIFDTVKNKQDGPALRQALAPKVNDVDGKLVDTNLKKRDDFY 820

		           L     D +    T+ +  + PA RQAL  K      + +    K  D + 

		Sbjct: 105 LATQMQDFFTSLQTLVSNAEDPAARQALIGK-----SEGLVNQFKTTDQYL 150

		

		

		>MALTOSEBP#Maltose binding protein signature.

		          Length = 396

		

		 Score = 30.1 bits (67), Expect = 0.003

		 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 16/108 (14%)

		

		Query: 39  SGDNGSLHQFYVDNYVGRDFSVDRASGVMAG------ALKNSYVTEPQVIDFGSSENAYK 92

		           + D G   ++    Y  +D  VD A G  AG       +KN ++      D+  +E A+ 

		Sbjct: 188 AADGGYAFKYENGKYDIKDVGVDNA-GAKAGLTFLVDLIKNKHMNADT--DYSIAEAAFN 244

		

		Query: 93  VVATMRVDQGAGAGSNV------YALTI-EEFESGPEKPFVFLMNATV 133

		              T     G  A SN+      Y +T+   F+  P KPFV +++A +

		Sbjct: 245 KGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGI 292

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 34.8 bits (80), Expect = 2e-04

		 Identities = 9/99 (9%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

		

		Query: 44  QQLQAELRLSHQALSVKQQECTTLKAQTQQQSAELQHATQSVSKIEQQLLGIQNSQQQTE 103

		           +++     L  +  S  Q +    +    ++ AE       +++ E     ++ S+    

		Sbjct: 182 EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL-SRVEKSRLDDF 240

		

		Query: 104 QKLYRKD----TELNRLQKQHEDLQQQYAEAAAKVASLQ 138

		             L  K       +   + ++ +   +     +++  ++

		Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score =  751 bits (1940), Expect = 0.0

		 Identities = 220/1053 (20%), Positives = 426/1053 (40%), Gaps = 49/1053 (4%)

		

		Query: 5    MLRLAIARRYLFLTLTLLIIAIGSWSYQQLPIDAVPDITNVQVQINTAAPGYSPLEAEQR 64

		            M    I R      L ++++  G+ +  QLP+   P I    V ++   PG      +  

		Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

		

		Query: 65   ITYPVETALYGLPNLSYTRSLS-RYGLSQVTVVFEEGTDIYFARNLINTRLGAIKDMLPE 123

		            +T  +E  + G+ NL Y  S S   G   +T+ F+ GTD   A+  +  +L     +LP+

		Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

		

		Query: 124  GIEPEMGPISTGLGEIFMYTVQAKPGALQQNGSPYDAMALREIQDWIIKPQLAQVKGVVE 183

		             ++ +   +        M            +        + +     +K  L+++ GV +

		Sbjct: 121  EVQQQGISVEKSSSSYLMVA------GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174

		

		Query: 184  VNSIGGYNKQYHVLPDPLKLLNYGLSIKDIELALQANNDNRGAGYI------EREGMQLL 237

		            V   G       +  D   L  Y L+  D+   L+  ND   AG +        + +   

		Sbjct: 175  VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233

		

		Query: 238  VRSPGQLTSLDDIANVII-TQYDTIPVKLSDVADVAIGKELRTGAATQDGKEAVLGTAMM 296

		            + +  +  + ++   V +    D   V+L DVA V +G E     A  +GK A      +

		Sbjct: 234  IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293

		

		Query: 297  LIDENSRTVARDVAQKLEQIKSSLPEGIIAEAVYDRTTLVDKAIATVSKNLLEGALLVIV 356

		                N+   A+ +  KL +++   P+G+     YD T  V  +I  V K L E  +LV +

		Sbjct: 294  ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353

		

		Query: 357  VLFILLGNLRGALITAAVIPLSMLMTITGMVQAGVSANLMSLG--ALDFGLIVDGTVIIV 414

		            V+++ L N+R  LI    +P+ +L T   +   G S N +++    L  GL+VD  +++V

		Sbjct: 354  VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413

		

		Query: 415  ENAVRRLAQAQHNGRIQPLKERLNTVYLATAEVIRPSLFGVAIITIVYMPIFSLTGVEGK 474

		            EN  R + + +   +             + +++    +    +++ V++P+    G  G 

		Sbjct: 414  ENVERVMMEDKLPPK--------EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465

		

		Query: 475  MFHPMAATVVIALLSAMVLSLTIVPAAVAVFLNGKISEKESA----------VIRSAKTL 524

		            ++   + T+V A+  +++++L + PA  A  L    +E                  +   

		Sbjct: 466  IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNH 525

		

		Query: 525  YAPLLALALKWRALVIGLASALVGVCLWLATTLGSEFVPQLDEGDIALHAMRIPGTGLEQ 584

		            Y   +   L      + + + +V   + L   L S F+P+ D+G          G   E+

		Sbjct: 526  YTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQER 585

		

		Query: 585  -AVAMQEILEQKIKTFAEVDKVFARIGTPEVATDPMPPNVADNFVILKPRSEWPNPDKTK 643

		                + ++ +  +K   E   V +       +      N    FV LKP  E    + + 

		Sbjct: 586  TQKVLDQVTDYYLK--NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSA 643

		

		Query: 644  AQLVTEMEAALATLPGNNYEFTQPIQM-RFNELISGVRADLG-IKVFGDDLDQLVTSANQ 701

		              ++   +  L  +      F  P  M    EL +    D   I   G   D L  + NQ

		Sbjct: 644  EAVIHRAKMELGKIRDG---FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQ 700

		

		Query: 702  ILQAVNKVQGA-ADTKVEQVTGLPTLSVIPNRTALARYGLNVVELQDWVAAAIGGTSAGI 760

		            +L    +   +    +   +       +  ++      G+++ ++   ++ A+GGT    

		Sbjct: 701  LLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND 760

		

		Query: 761  LYEGDRRFELIVRLPETLRRDLDKLAVLPVPLPNGDFVPLQEVATLDLSPAPAQISRENG 820

		              +  R  +L V+     R   + +  L V   NG+ VP     T        ++ R NG

		Sbjct: 761  FIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNG 820

		

		Query: 821  KRRVVVTANVRGRDLGSFVEEVKAQINRDVT-LPAGYWLDYGGTFEQLESASQRLSIVVP 879

		               + +         G+   +  A +    + LPAG   D+ G   Q   +  +   +V 

		Sbjct: 821  LPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVA 877

		

		Query: 880  VTLLLILGILVMAFASFKDALIIFSGVPLALTGGVLALYLRGMPLSISAGIGFIALSGVA 939

		            ++ +++   L   + S+   + +   VPL + G +LA  L      +   +G +   G++

		Sbjct: 878  ISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLS 937

		

		Query: 940  VLNGLVMLSFIRDLWREKG-DLLLAITEGALTRLRPVLMTALVASLGFVPMAINIGTGAE 998

		              N ++++ F +DL  ++G  ++ A       RLRP+LMT+L   LG +P+AI+ G G+ 

		Sbjct: 938  AKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSG 997

		

		Query: 999  VQRPLATVVIGGIISSTLLTLLVLPVLYHWVHK 1031

		             Q  +   V+GG++S+TLL +  +PV +  + +

		Sbjct: 998  AQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030

		

		

		

		 Score = 77.2 bits (190), Expect = 2e-16

		 Identities = 64/354 (18%), Positives = 139/354 (39%), Gaps = 17/354 (4%)

		

		Query: 699  ANQILQAVNKVQGAADTKVEQVTGLPTLSVIPNRTALARYGLNVVELQDWVAAA----IG 754

		            A+ +   ++++ G  D  V+       + +  +   L +Y L  V++ + +         

		Sbjct: 159  ASNVKDTLSRLNGVGD--VQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAA 216

		

		Query: 755  GTSAGILYEGDRRFELIVRLPETLRRDLDKLAVLPVPLPNGDFVPLQEVATLDLSPAPAQ 814

		            G   G      ++    +      +   +   V      +G  V L++VA ++L      

		Sbjct: 217  GQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN 276

		

		Query: 815  I-SRENGKRRVVVTANVR-GRDLGSFVEEVKAQINR-DVTLPAGYWLDYGGTFEQLESAS 871

		            + +R NGK    +   +  G +     + +KA++       P G  +     ++      

		Sbjct: 277  VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQG--MKVLYPYDTTPFVQ 334

		

		Query: 872  QRLSIVVPVTLL--LILGILVMAF--ASFKDALIIFSGVPLALTGGVLALYLRGMPLSIS 927

		              +  VV  TL   ++L  LVM     + +  LI    VP+ L G    L   G  ++  

		Sbjct: 335  LSIHEVV-KTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTL 393

		

		Query: 928  AGIGFIALSGVAVLNGLVMLSFIRDLWREKGDLLLAITEGALTRLR-PVLMTALVASLGF 986

		               G +   G+ V + +V++  +  +  E        TE ++++++  ++  A+V S  F

		Sbjct: 394  TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453

		

		Query: 987  VPMAINIGTGAEVQRPLATVVIGGIISSTLLTLLVLPVLYHWVHKNDNRKQQTE 1040

		            +PMA   G+   + R  +  ++  +  S L+ L++ P L   + K  + +    

		Sbjct: 454  IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEN 507

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 38.3 bits (89), Expect = 4e-05

		 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 23/128 (17%)

		

		Query: 166 IKAPIDGVVIQRSANV--GEIAQQQTLFSIA-DFGSLWADFRVYPSQQVAVATGQTVVIM 222

		           I+AP+   V Q   +   G +   +TL  I  +  +L     V       +  GQ  +I 

		Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389

		

		Query: 223 AADT-------EINGVIAHIIPSL-----TQPYQLARVKLDK----RDGK---LSSGQLI 263

		             +         + G + +I                 + +++       K   LSSG  +

		Sbjct: 390 -VEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAV 448

		

		Query: 264 EGAVISGE 271

		              + +G 

		Sbjct: 449 TAEIKTGM 456

		

		

		>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase

		           signature.

		          Length = 468

		

		 Score = 28.2 bits (62), Expect = 0.013

		 Identities = 14/68 (20%), Positives = 30/68 (44%)

		

		Query: 61  ADIERLLFIKHCRSLDLSLAEIRQLLSLNDSPMSQCDDVNQMIEQHIEQVERRIADLTQL 120

		            D  +L  + HCR+     A++   + +NDS  SQ    + + +  +++    +    QL

		Sbjct: 392 GDDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQL 451

		

		Query: 121 NKQLKALR 128

		           +  +K   

		Sbjct: 452 DVLIKLAE 459

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 88.7 bits (220), Expect = 1e-22

		 Identities = 37/117 (31%), Positives = 61/117 (52%)

		

		Query: 2   KILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61

		            IL+ +D+      L++ L  AG+ V    N  T +      + DLV+ D+++PD N +D

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 62  IIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRR 118

		           ++  ++ A   +PVL+++A  T    +K  E GA DYL KPF   EL+  +   L  

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 35.2 bits (81), Expect = 6e-04

		 Identities = 19/157 (12%), Positives = 44/157 (28%), Gaps = 9/157 (5%)

		

		Query: 294 ADANIGAARAAFFPSITLTSGLSASSTELSSLFTPGSGMWNFIPKIDIPVFNAGRNKANL 353

		           A+A+    +++   +    +     S  +     P   + +     ++      R  + +

		Sbjct: 132 AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI 191

		

		Query: 354 KLAEIRQQQSVVNYEQKIQSAFKDVSDTFALRDSLSQQLESQQRYLDSLQITLQRARGLY 413

		           K      Q      E  +     +     A  +        ++  LD           L 

		Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS-------LL 244

		

		Query: 414 ASGAVSYIEVLDAERSLFATQQTILDLTYSRQVNEIN 450

		              A++   VL+ E         +    Y  Q+ +I 

		Sbjct: 245 HKQAIAKHAVLEQENKYVEAVNEL--RVYKSQLEQIE 279

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score =  689 bits (1779), Expect = 0.0

		 Identities = 211/1060 (19%), Positives = 435/1060 (41%), Gaps = 54/1060 (5%)

		

		Query: 1    MIEWIIRRSVANRFLVMMGALFLSIWGTWTIINTPVDALPDLSDVQVIIKTSYPGQAPQI 60

		            M  + IRR         + A+ L + G   I+  PV   P ++   V +  +YPG   Q 

		Sbjct: 1    MANFFIRR----PIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQT 56

		

		Query: 61   VENQVTYPLTTTMLSVPGAKTVRGFSQ-FGDSYVYVIFEDGTDLYWARSRVLEYLNQVQG 119

		            V++ VT  +   M  +     +   S   G   + + F+ GTD   A+ +V   L     

		Sbjct: 57   VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATP 116

		

		Query: 120  KLPAGVSS-EIGPDATGVGWIFEYALVDRSGKHDLSELRSLQDWFLKFELKTIPNVAEVA 178

		             LP  V    I  + +   ++     V  +      ++       +K  L  +  V +V 

		Sbjct: 117  LLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQ 176

		

		Query: 179  SVGGVVKQYQIQLDPVKLTQYGISLPEVKQALSSSNQEAGG------SSVEIAESEYMVR 232

		              G      +I LD   L +Y ++  +V   L   N +          ++   +    + 

		Sbjct: 177  LFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235

		

		Query: 233  ASGYLQTIDDFKNIVLKTGENGVPVYLRDVARIQMGPEMRRGIAELNGQGEVAGGVVILR 292

		            A    +  ++F  + L+   +G  V L+DVAR+++G E    IA +NG+   AG  + L 

		Sbjct: 236  AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLA 294

		

		Query: 293  SGKNAREVITAVRDKLDTLKASLPEGVEIVTTYDRSQLIDRAIDNLSYKLLEEFIVVAVV 352

		            +G NA +   A++ KL  L+   P+G++++  YD +  +  +I  +   L E  ++V +V

		Sbjct: 295  TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354

		

		Query: 353  CALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIE 412

		              LFL ++R+ L+  I++P+ L   F ++   G + N +++ G+ +A+G +VD AIV++E

		Sbjct: 355  MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414

		

		Query: 413  NAHKRLEEWDHQHPGEQIDNATRWKVITDASVEVGPALFISLLIITLSFIPIFTLEGQEG 472

		            N  + + E          D     +    +  ++  AL    ++++  FIP+    G  G

		Sbjct: 415  NVERVMME----------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464

		

		Query: 473  RLFGPLAFTKTYSMAGAAILAIIVIPILMGFWIRGKIPAETSNPLNRL----------LI 522

		             ++   + T   +MA + ++A+I+ P L    ++  + AE                   +

		Sbjct: 465  AIYRQFSITIVSAMALSVLVALILTPALCATLLKP-VSAEHHENKGGFFGWFNTTFDHSV 523

		

		Query: 523  KAYHPLLLRVLHWPKTTLLVAALSIFTVIWPLSQVGGEFLPKINEGDLLYMPSTLPGVSP 582

		              Y   + ++L      LL+ AL +  ++    ++   FLP+ ++G  L M     G + 

		Sbjct: 524  NHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQ 583

		

		Query: 583  GEAAALLQTTDKLIKT--VPEVASVFGKTGKAETATDSAPLEMMETTIQLKPEDQW-RPG 639

		                 +L              V SVF   G + +             + LKP ++     

		Sbjct: 584  ERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQN---AGMAFVSLKPWEERNGDE 640

		

		Query: 640  MTIDKIIEELDRTVRLPGLANLWVPPIRNRIDMLSTGIKSPIGIKVSGTVLSDIDVTAQS 699

		             + + +I      +       +    +   +++ +        I  +G     +      

		Sbjct: 641  NSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQ 700

		

		Query: 700  IEAVAKTVPG-VVSALAERLEGGRYIDVDINREKASRYGMTVGDVQLFVSSAIGGAMVGE 758

		            +  +A   P  +VS     LE      +++++EKA   G+++ D+   +S+A+GG  V +

		Sbjct: 701  LLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND 760

		

		Query: 759  TVEGVARYPINIRYPQDYRNSPQALREMPILTPMKQQITLGDVADIKVVSGPTMLKTENA 818

		             ++      + ++    +R  P+ + ++ + +   + +          V G   L+  N 

		Sbjct: 761  FIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNG 820

		

		Query: 819  RPASWIYVDARGRDMVSVVNDIKTAISEKVKLRPGTSVAFSGQFELLEHANKKLKLMVPM 878

		             P+  I  +A           +   +    KL  G    ++G       +  +   +V +

		Sbjct: 821  LPSMEIQGEAAPGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAI 878

		

		Query: 879  TVMIIFILLYLAFRRVDEALLILMSLPFALVGGIWFLYWQGFHMSVATGTGFIALAGVAA 938

		            + +++F+ L   +      + +++ +P  +VG +           V    G +   G++A

		Sbjct: 879  SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938

		

		Query: 939  EFGVVMLMYLRHAIEAHPELSRKETFTPEGLDEALYHGAVLRVRPKAMTVAVIVAGLLPI 998

		            +  ++++ + +       +L  KE        EA      +R+RP  MT    + G+LP+

		Sbjct: 939  KNAILIVEFAK-------DLMEKEGKGVV---EATLMAVRMRLRPILMTSLAFILGVLPL 988

		

		Query: 999  LWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLI 1038

		                GAGS   + +   ++GGM++A LL++F +P  + +I

		Sbjct: 989  AISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028

		

		

		>PF00577#Outer membrane usher protein FimD

		          Length = 878

		

		 Score =  702 bits (1814), Expect = 0.0

		 Identities = 269/867 (31%), Positives = 418/867 (48%), Gaps = 52/867 (5%)

		

		Query: 14  LRLLPLLLLSAPLYADDMEYTFDEALLLGPGYNSDYLQRLANGPDILPGQYQVDLFINGR 73

		           +RL      +A       E  F+   L         L R  NG ++ PG Y+VD+++N  

		Sbjct: 28  VRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNG 87

		

		Query: 74  FVSRELLQFIELSDNK-VEPCIEEAIWTKAGVRPEFMAPAPITGG--C-SLGYTVKGNNF 129

		           +++   + F      + + PC+  A     G+    ++   +     C  L   +     

		Sbjct: 88  YMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATA 147

		

		Query: 130 SFDSGSLRLELTVPQAYMDNKPRGYISPDEWDSGETALFVNYSGNYYRSESSYGRRSTSE 189

		             D G  RL LT+PQA+M N+ RGYI P+ WD G  A  +NY+ +    ++  G    S 

		Sbjct: 148 QLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGG--NSH 205

		

		Query: 190 SGYLGLSSGFNLGLWRIRNQSTYQYRDSGFGSDSQ--FDSLRTYATRALPFWQSELSLGE 247

		             YL L SG N+G WR+R+ +T+ Y  S   S S+  +  + T+  R +   +S L+LG+

		Sbjct: 206 YAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGD 265

		

		Query: 248 LYTRSTVFGSISFKGFQIQSDTRMLPVSQRGYAPTVTGIAQTTAKVVIKQNGREIYQTTV 307

		            YT+  +F  I+F+G Q+ SD  MLP SQRG+AP + GIA+ TA+V IKQNG +IY +TV

		Sbjct: 266 GYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTV 325

		

		Query: 308 AAGPFEINDLYPTNYQGDLLVEITEADGRVSSFTVPFSAVPGSMRAGQSQYALSMGKSID 367

		             GPF IND+Y     GDL V I EADG    FTVP+S+VP   R G ++Y+++ G+   

		Sbjct: 326 PPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRS 385

		

		Query: 368 TG---EDGYFTDFTYELGLSNAMTFNSGLRIASGYVAASAGSVFTT-PIGAIGATGVYSH 423

		                E   F   T   GL    T   G ++A  Y A + G       +GA+      ++

		Sbjct: 386 GNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQAN 445

		

		Query: 424 SKLKPELGDVETDSGWRLGLNYSRAF-ESGTSVTLAGYKYSTEGFRELSDIFRQRAYLDN 482

		           S     L D     G  +   Y+++  ESGT++ L GY+YST G+   +D    R    N

		Sbjct: 446 ST----LPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYN 501

		

		Query: 483 GY-------------DYSSENYLQKAEMVLSMSQHLGDWGSLAVSGSKRQYRDGRDDDES 529

		                          DY +  Y ++ ++ L+++Q LG   +L +SGS + Y    + DE 

		Sbjct: 502 IETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQ 561

		

		Query: 530 YQMGYSNQFGLVSLGVNYSRQYLNQTENSIAGPIPVKTKDDVWSLSLSVPLG-------A 582

		           +Q G +  F  ++  ++YS     +           K +D + +L++++P          

		Sbjct: 562 FQAGLNTAFEDINWTLSYSL---TKNAWQ-------KGRDQMLALNVNIPFSHWLRSDSK 611

		

		Query: 583 SSNHAASTGYSNSGDSN---NYYAGISGMLDDDRTLSYSLNASR-LDDNDFSGNSYSATL 638

		           S    AS  YS S D N      AG+ G L +D  LSYS+        +  SG++  ATL

		Sbjct: 612 SQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATL 671

		

		Query: 639 NKRMSLASMGLNYSRSDSYQQWGGNIRGAVVVHEGGLTLGQSVGETFAIIEAPGAEGAAV 698

		           N R    +  + YS SD  +Q    + G V+ H  G+TLGQ + +T  +++APGA+ A V

		Sbjct: 672 NYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKV 731

		

		Query: 699 KNNWGTYIDSNGYALMPSLMPYRSNDVSLDSANIDEDVELVDSRKTVTPYAGAAVKLKYE 758

		           +N  G   D  GYA++P    YR N V+LD+  + ++V+L ++   V P  GA V+ +++

		Sbjct: 732 ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFK 791

		

		Query: 759 TRKGKAALFIAKLDSGEVAPLGANILGSLGENIGTVGQAGLAYVRLAEPVGKLTLKWGER 818

		            R G   L      + +  P GA +     ++ G V   G  Y+      GK+ +KWGE 

		Sbjct: 792 ARVGIKLLMTLT-HNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEE 850

		

		Query: 819 REDSCQIHYDLTEQPTDVRLHRLPTVC 845

		               C  +Y L  +     L +L   C

		Sbjct: 851 ENAHCVANYQLPPESQQQLLTQLSAEC 877

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 77.2 bits (190), Expect = 1e-16

		 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 10/157 (6%)

		

		Query: 960  HILIVDDHSANRLLLSQQLRYLGHSVDEANNGLEAIQLFRQHPYRIVLTDCNMPIMDGYE 1019

		             IL+ DD +A R +L+Q L   G+ V   +N     +        +V+TD  MP  + ++

		Sbjct: 5    TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 1020 FSRRLRQFEQNNNLPAAVVLGYTANAQLEAKQACIDAGMNDCLFKPISLEDLRQKLESYC 1079

		               R++  +   +LP  V+   +A           + G  D L KP  L +L   +    

		Sbjct: 65   LLPRIK--KARPDLPVLVM---SAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG--- 116

		

		Query: 1080 QKLTLEHPQQAFLPEALTKLTG--GNTPLFEQLLKEL 1114

		            + L     + + L +         G +   +++ + L

		Sbjct: 117  RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 86.0 bits (213), Expect = 6e-22

		 Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

		

		Query: 1   MKR-KILIVDDHPVVVLALKIILEQNGFEVIADTNNGVDALKLVKDLSPDAVILDIGIPQ 59

		           M    IL+ DD   +   L   L + G++V   T+N     + +     D V+ D+ +P 

		Sbjct: 1   MTGATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD 59

		

		Query: 60  LDGLEVIERSRKLANPPPILVLTAQPSDHFVVRCIQAGASGFVSKQKDMTEVTGALRAIL 119

		            +  +++ R +K     P+LV++AQ +    ++  + GA  ++ K  D+TE+ G +   L

		Sbjct: 60  ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119

		

		Query: 120 S-------GHSYFPIFGNNIITQS--HQQEAELIKKLSTREMVVL 155

		           +               G  ++ +S   Q+   ++ +L   ++ ++

		Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 50.2 bits (120), Expect = 8e-09

		 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

		

		Query: 1  MGKIRVIVLEDHPFQRTVLEYNLASFPCVEVFSFGTAQDALAWLDIHHSADIVICDLMMT 60

		          M    ++V +D    RTVL     S    +V     A     W+      D+V+ D++M 

		Sbjct: 1  MTGATILVADDDAAIRTVLN-QALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMP 58

		

		Query: 61 GVDGLSFLRKAK 72

		            +    L + K

		Sbjct: 59 DENAFDLLPRIK 70

		

		

		>BINARYTOXINA#Clostridial binary toxin A signature.

		          Length = 454

		

		 Score = 33.5 bits (76), Expect = 0.002

		 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

		

		Query: 483 LNNDGGNIFNLL---PVPNEQVRNDYYRLSHGLEFGYAAAMFNLPYNQVDNLADFQDSYN 539

		           L++   NI N L   P+P+  +    YR S   EFG         +N+++N+  F++ + 

		Sbjct: 312 LDSKVNNIENALKLTPIPSNLI---VYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWE 368

		

		Query: 540 ----EALDFQGASIIEVNVSQTQASDQIAELNL 568

		                  +F   SI  VN+S       I  +N+

		Sbjct: 369 GKVITYPNFISTSIGSVNMSAFAKRKIILRINI 401

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 29.5 bits (66), Expect = 0.006

		 Identities = 12/39 (30%), Positives = 21/39 (53%)

		

		Query: 112 NVYVNANHRNKGLGKLLVNAVIEHARAIGLQKIYLFTAD 150

		           ++ V  ++R KG+G  L++  IE A+      + L T D

		Sbjct: 94  DIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 75.3 bits (185), Expect = 5e-18

		 Identities = 30/129 (23%), Positives = 60/129 (46%)

		

		Query: 2   RLLLIEDDTDLVARLIPALNEAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLQ 61

		            +L+ +DD  +   L  AL+ AGY V    N           + + V+ D+ +P +    

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 62  VLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFG 121

		           +L + ++    +PVL+++A++ +   +   + GA DYL KPF + EL+  +   +     

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

		

		Query: 122 RADNVLQHA 130

		           R   +   +

		Sbjct: 125 RPSKLEDDS 133

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  105 bits (262), Expect = 2e-29

		 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 15/248 (6%)

		

		Query: 5   VLVTGSSRGIGKAIALKLAVAGFDIALHYHSNQTAADATAAEVRALGVNASLLKFDVADR 64

		             +TG+++GIG+A+A  LA  G  IA     N    +   + ++A   +A     DV D 

		Sbjct: 11  AFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69

		

		Query: 65  ATVRAAIEADIEANGAYYGVILNAGINRDTAFPAMTESEWDSVIHTNLDGFYNVIHPCVM 124

		           A +           G    ++  AG+ R     ++++ EW++    N  G +N     V 

		Sbjct: 70  AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS-VS 128

		

		Query: 125 PMVQGRKGGRIITLASVSGIAGNRGQVNYSASKAGIIGATKALSLELAKRKITVNCIAPG 184

		             +  R+ G I+T+ S            Y++SKA  +  TK L LELA+  I  N ++PG

		Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188

		

		Query: 185 LIETDM----------VADIPKDMVEQL---VPMRRMGKPSEIAALAAFLMSDDAAYITR 231

		             ETDM             + K  +E     +P++++ KPS+IA    FL+S  A +IT 

		Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248

		

		Query: 232 QVISVNGG 239

		             + V+GG

		Sbjct: 249 HNLCVDGG 256

		

		

		>ACRIFLAVINRP#Acriflavin resistance protein family signature.

		          Length = 1034

		

		 Score = 33.7 bits (77), Expect = 0.003

		 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 25/149 (16%)

		

		Query: 682 LLALALGIALLLFSLSFGIKKAAVVVAVPA--LAALLTLATLGITGSPLSLFHALALILV 739

		             A+ L   ++   L          +AVP   L     LA  G + + L++F    ++L 

		Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF---GMVLA 401

		

		Query: 740 FGIGIDYSL----------------FFASAQQHGKAVMMAVFMSACSTLLAFGLLAFSQT 783

		            G+ +D ++                   + ++    +  A+   A      F  +AF   

		Sbjct: 402 IGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGG 461

		

		Query: 784 QA---IHYFGLTLSLGIGFTFLLSPLILT 809

		                   F +T+   +  + L++ LILT

		Sbjct: 462 STGAIYRQFSITIVSAMALSVLVA-LILT 489

		

		

		

		 Score = 33.3 bits (76), Expect = 0.005

		 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 17/122 (13%)

		

		Query: 676 RLLTLKLLALALGIALLLFSLSFGIKKAAVVVAVPALAALLTLATLGITGSPLSLFHALA 735

		           +   L  ++  + + L L +L         V+ V  L  +  L    +      ++  + 

		Sbjct: 871 QAPALVAISFVV-VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929

		

		Query: 736 LILVFGIGIDYSLFFAS-----AQQHGKAVMMAV-----------FMSACSTLLAFGLLA 779

		           L+   G+    ++          ++ GK V+ A             M++ + +L    LA

		Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989

		

		Query: 780 FS 781

		            S

		Sbjct: 990 IS 991

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 40.6 bits (95), Expect = 2e-05

		 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

		

		Query: 294 MRLVQGDV-----GSGKTLVAAMAA-LQAIENGYQVAMMAPTELLAEQHATNFAAWFEPL 347

		           M L +  +     G GKTL A + A L A+  G  V ++   + LA++ A N    FE L

		Sbjct: 92  MVLNERCIAEMRTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAENNRPLFEFL 150

		

		Query: 348 GLKVGW-LAGKLKGKARTQSLADI 370

		           GL VG  L G      R    ADI

		Sbjct: 151 GLTVGINLPGMPAPAKREAYAADI 174

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 83.8 bits (207), Expect = 8e-20

		 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 12/118 (10%)

		

		Query: 374 LFDYDSERMLPESKPVLEVLATYLKQN--PALSFYVVGHTDDKGERSYNQSLSERRAAAV 431

		           LF+++   + PE +  L+ L + L        S  V+G+TD  G  +YNQ LSERRA +V

		Sbjct: 222 LFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSV 281

		

		Query: 432 IKQLNEAFNIPSVQLTAHGNGEYSPVASNANDTGQRL---------NRRVELVLRSDK 480

		           +  L  +  IP+ +++A G GE +PV  N  D  ++          +RRVE+ ++  K

		Sbjct: 282 VDYL-ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIK 338

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score = 68.6 bits (168), Expect = 7e-15

		 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 20/221 (9%)

		

		Query: 150 SGMRMEAKVHIVTC----ANDMAKNITK-SVERCGLKVDDLVFSGIASADAVLTFDEKDL 204

		           S   M     ++ C    A  + +   + S +  G +   L+   +A+A        +  

		Sbjct: 100 SNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEAT 159

		

		Query: 205 GVCIVDIGGGTTDIAVYTNGALRHCAVVPVAGNQVTNDIAKIFR------TPSSHAEQIK 258

		           G  +VDIGGGTT++AV +   + + + V + G++    I    R         + AE+IK

		Sbjct: 160 GSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIK 219

		

		Query: 259 VQFACARSSMVSREDSIEVPS---VGGRPSR-SMSRHTLAEVVEPRYQELFELVLKELKD 314

		            +   A          IEV       G P   +++ + + E ++     +   V+  L+ 

		Sbjct: 220 HEIGSAYPG--DEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQ 277

		

		Query: 315 SGLE---DQIAAGIVLTGGTASIQGVVDIAEATFGMPVRVA 352

		              E   D    G+VLTGG A ++ +  +     G+PV VA

		Sbjct: 278 CPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVA 318

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 1323 bits (3425), Expect = 0.0

		 Identities = 659/909 (72%), Positives = 766/909 (84%), Gaps = 10/909 (1%)

		

		Query: 1   MFGKLLTKVFGSRNDRTLKGLQKVVIKINALEADYEKLTDEELKAKTAEFRERLAAGETL 60

		           M  KLLTKVFGSRNDRTL+ ++KVV  INA+E + EKL+DEELK KTAEFR RL  GE L

		Sbjct: 1   MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60

		

		Query: 61  DDIMAEAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNA 120

		           ++++ EAFA VREASKRVF MRHFDVQLLGGMVL+   IAEMRTGEGKTLTATLPAYLNA

		Sbjct: 61  ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120

		

		Query: 121 LTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGIGQQEKKAAYNADITYGTNN 180

		           LTGKGVHV+TVNDYLA+RDAENNRPLFEFLGLTVGIN+ G+    K+ AY ADITYGTNN

		Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180

		

		Query: 181 EFGFDYLRDNMAFSPQDRVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYTKIN 240

		           E+GFDYLRDNMAFSP++RVQR LHYAL+DEVDSILIDEARTPLIISG AEDSSE+Y ++N

		Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240

		

		Query: 241 TLIPNLIRQDKEDSEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300

		            +IP+LIRQ+KEDSE + GEG +S+DEK++QV+ TERG   +E LL++ G++ EG+SLYS

		Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300

		

		Query: 301 AANISLLHHVNAALRAHTLFERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQAVEAK 360

		            ANI L+HHV AALRAH LF RDVDYIV+DGEVIIVDEHTGRTM GRRWS+GLHQAVEAK

		Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360

		

		Query: 361 EGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVR 420

		           EGV IQNENQTLASITFQNYFR YEKLAGMTGTADTEAFEF  IY LDTVVVPTNRPM+R

		Sbjct: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420

		

		Query: 421 KDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVQEKIPHQVLN 480

		           KD+ DLVY+T  EK QAII+DIK+   +GQPVLVGT+SIE+SEL++  + +  I H VLN

		Sbjct: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480

		

		Query: 481 AKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIDALDNPTPEQKAKIKAD 540

		           AKFH  EA IVAQAG   AVTIATNMAGRGTDIVLGG+W  E+ AL+NPT EQ  KIKAD

		Sbjct: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 540

		

		Query: 541 WQVRHDAVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFAS 600

		           WQVRHDAV+ AGGLHI+GTERHESRRIDNQLRGR+GRQGDAGSSRFYLSMED+LMRIFAS

		Sbjct: 541 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS 600

		

		Query: 601 DRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVANDQRQVVY 660

		           DRVSGMM+KLGM+ GEAIEHPWV++AI NAQRKVE+RNFDIRKQLLE+DDVANDQR+ +Y

		Sbjct: 601 DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY 660

		

		Query: 661 AQRNELMDAESIEDTIKNIQDDVIGAVIDQYIPPQSVEELWDVPGLEQRLNQEFMLKLPI 720

		           +QRNEL+D   + +TI +I++DV  A ID YIPPQS+EE+WD+PGL++RL  +F L LPI

		Sbjct: 661 SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI 720

		

		Query: 721 QEWLDKEDDLHEESLRERIITSWSDAYKAKEEMVGASVLRQFEKAVMLQTLDGLWKEHLA 780

		            EWLDKE +LHEE+LRERI+    + Y+ KEE+VGA ++R FEK VMLQTLD LWKEHLA

		Sbjct: 721 AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA 780

		

		Query: 781 AMDHLRQGIHLRGYAQKNPKQEYKRESFELFQQLLNTLKHDVISVLSKVQVQAQSDVEEM 840

		           AMD+LRQGIHLRGYAQK+PKQEYKRESF +F  +L +LK++VIS LSKVQV+   +VEE+

		Sbjct: 781 AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL 840

		

		Query: 841 EARRREEDAKIQRDYQHAAAEALVGGGDEDDESIAAHTPMIRDGD-KVGRNDPCPCGSGR 899

		           E +RR E               +     +DD+S AA     + G+ KVGRNDPCPCGSG+

		Sbjct: 841 EQQRRME---------AERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGK 891

		

		Query: 900 KYKQCHGKL 908

		           KYKQCHG+L

		Sbjct: 892 KYKQCHGRL 900

		

		

		>PF02370#M protein repeat

		          Length = 168

		

		 Score = 30.5 bits (68), Expect = 0.014

		 Identities = 13/69 (18%), Positives = 32/69 (46%)

		

		Query: 387 DERKAKLRIQQEALKQAQKIRSAREEALKLEAETNEKLEQMVQERTLELEITLRELHEVN 446

		           D RK + + Q +  +  ++ +  +E   + E    +  ++  QE+  + +   ++L    

		Sbjct: 59  DLRKREGQYQDKIEELEKERKEKQERPERREKFERQHQDKHYQEQQKKHQQEQQQLEAEK 118

		

		Query: 447 QKLTEQSTI 455

		           QKL ++  I

		Sbjct: 119 QKLAKEKQI 127

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 43.7 bits (103), Expect = 6e-08

		 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

		

		Query: 4  KQNGFSLIELVIVIVILGLLAATAIPRFLNVTD--DAQDASVDGVA 47

		          KQ GF+L+E+++VIVI+G+LA+  +P  +   +  D Q A  D VA

		Sbjct: 6  KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVA 51

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 44.9 bits (106), Expect = 1e-08

		 Identities = 14/31 (45%), Positives = 23/31 (74%)

		

		Query: 2  MKRQQGFTLIELVVVIIILGILAVTAAPKFI 32

		            +Q+GFTL+E++VVI+I+G+LA    P  +

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNLM 34

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 49.1 bits (117), Expect = 4e-10

		 Identities = 18/52 (34%), Positives = 28/52 (53%)

		

		Query: 1  MKKQIGFTLIELVVVIIILGILAVTAAPKFINLQSDARASTVKGLEAAIKGA 52

		            KQ GFTL+E++VVI+I+G+LA    P  +  +  A          A++ A

		Sbjct: 4  TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENA 55

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 44.9 bits (106), Expect = 2e-08

		 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

		

		Query: 8  KQAGFTLVELVTTVILIGILSVTVLPRLFTQSSYSAFSLRNEFMAELRQVQQRALNNTDR 67

		          +Q GFTL+E++  ++L+G+ +  VL         SA      F A+LR VQQR L    +

		Sbjct: 2  RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQT-GQ 60

		

		Query: 68 CYRIAVSSVGYQVSQFATRD 87

		           + ++V    +Q      RD

		Sbjct: 61 FFGVSVHPDRWQFLVLEARD 80

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 34.2 bits (78), Expect = 1e-04

		 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

		

		Query: 16 KGFTLIELVVGMLVIAIAIVM-LSSMLFPQADRAAKTLHRVRSA-ELA--HSVMNE 67

		          +GFTL+E+++ +L++ ++  M L +    + D AA+TL R  +         +   

		Sbjct: 4  RGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTG 59

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 32.9 bits (75), Expect = 6e-04

		 Identities = 11/18 (61%), Positives = 17/18 (94%)

		

		Query: 13 RGFTLVEMVTVILILGIL 30

		          RGFTL+E++ VI+I+G+L

		Sbjct: 8  RGFTLLEIMVVIVIIGVL 25

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score =  556 bits (1435), Expect = 0.0

		 Identities = 313/348 (89%), Positives = 331/348 (95%), Gaps = 1/348 (0%)

		

		Query: 1   MFKKLRGIFSNDLSIDLGTANTLIYVRDEGIVLNEPSVVAIRGERNSSGQKSVAAVGTEA 60

		           M KK RG+FSNDLSIDLGTANTLIYV+ +GIVLNEPSVVAIR +R +   KSVAAVG +A

		Sbjct: 1   MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDR-AGSPKSVAAVGHDA 59

		

		Query: 61  KQMLGRTPGNIQAIRPMKDGVIADFYVTEKMLQHFIKQVHNNSFFRPSPRVLVCVPVGAT 120

		           KQMLGRTPGNI AIRPMKDGVIADF+VTEKMLQHFIKQVH+NSF RPSPRVLVCVPVGAT

		Sbjct: 60  KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119

		

		Query: 121 QVERRAIRESAMGAGAREVYLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAIISLN 180

		           QVERRAIRESA GAGAREV+LIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVA+ISLN

		Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179

		

		Query: 181 GVVYSSSVRIGGDKFDDAIINYVRRNYGSLIGEATAERIKHTIGTAYPGDEVLEIEVRGR 240

		           GVVYSSSVRIGGD+FD+AIINYVRRNYGSLIGEATAERIKH IG+AYPGDEV EIEVRGR

		Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239

		

		Query: 241 NLAEGVPRSFILNSNEILEALQEPLSGIVSAVMVALEQSPPELASDISERGMVLTGGGAL 300

		           NLAEGVPR F LNSNEILEALQEPL+GIVSAVMVALEQ PPELASDISERGMVLTGGGAL

		Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299

		

		Query: 301 LRDLDRLLMQETGIPVMVADDPLTCVARGGGKALEMIDMHGGDLFSEE 348

		           LR+LDRLLM+ETGIPV+VA+DPLTCVARGGGKALEMIDMHGGDLFSEE

		Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347

		

		

		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.

		          Length = 239

		

		 Score = 30.3 bits (68), Expect = 0.042

		 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

		

		Query: 1265 EPVVEELERKSKEIEIPESILPIIGAGDKAMPTEGNNEQHTPKLGPKASEDMKLGEPL-- 1322

		               V E E + + I  P    P++    K  P      +   K+  +   D+K  E    

		Sbjct: 65   PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP--KPKPKPVKKVQEQPKRDVKPVESRPA 122

		

		Query: 1323 -PQGSQPDTMPPEPAI--KPIEP--TNSQDVKPIKQNQ 1355

		             P  +                +P  + +   + + +NQ

		Sbjct: 123  SPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 160

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 48.7 bits (116), Expect = 1e-08

		 Identities = 36/231 (15%), Positives = 81/231 (35%), Gaps = 26/231 (11%)

		

		Query: 6   MLALVALVALGLILAYGLKLAYSPQPSLLQGQI--EAREYNVSSKVPGRVEQVLVRRGDS 63

		              ++  + +  IL+   ++      +   G++    R   +       V++++V+ G+S

		Sbjct: 61  AYFIMGFLVIAFILSVLGQVE---IVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGES 117

		

		Query: 64  VAEGDLLFAIHSPELDAKLMQAEGGRDAAQAKQLEANNGARSQEVMAAKEQWLKAQAAAT 123

		           V +GD+L  + +   +A  ++ +     A+ +Q      +RS E+    E  L  +    

		Sbjct: 118 VRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQ 177

		

		Query: 124 LAKTTYTRVENLFNEGVAARQKRDEAFTQWQAAKYTEQAALAMYQMAEEG--ARVETKAA 181

		                         E +       E F+ WQ  KY ++  L   +       AR+     

		Sbjct: 178 NVSE---------EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYEN 228

		

		Query: 182 AAGNARM---------AEGAVKEVSAVMEDSQMRAPKSGEISEVLLQAGEL 223

		            +   +           + A+ +  AV+E          E+     Q  ++

		Sbjct: 229 LSRVEKSRLDDFSSLLHKQAIAK-HAVLEQENKYVEAVNELRVYKSQLEQI 278

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 28.9 bits (64), Expect = 0.040

		 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 20/156 (12%)

		

		Query: 193  NSNGSRKRTTPQVNKPAQEIPAERMTP------------QVNKQMPEVQTEATAPQVNAL 240

		            N NG      P+V K  Q +    +T               N+++  V      P   A 

		Sbjct: 973  NVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT 1032

		

		Query: 241  ANEQAPEILPIPVREVSRILAQALQTGTLSPEDERYIGQ-------LITQRTDLTQQEAE 293

		             +E   E +    ++ S+ + +  Q  T +    R + +         TQ  ++ Q  +E

		Sbjct: 1033 PSETT-ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091

		

		Query: 294  QRVSQGFEKVQTTLKNAETTARQAADEARKASAYAA 329

		             + +Q  E  +T     E  A+   ++ ++     +

		Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127

		

		

		>SURFACELAYER#Lactobacillus surface layer protein signature.

		          Length = 439

		

		 Score = 31.9 bits (72), Expect = 0.010

		 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 11/173 (6%)

		

		Query: 315 NDGTITRVQTPASISFSSDCTTNNSATLDTPVTTLSGNASSTFQDTSCSGNSERNDQIIA 374

		           N  T  +     + S S+      S T+     +L+G+ S+++   S + N  ++     

		Sbjct: 41  NANTNAKYDVDVTPSISAIAAVAKSDTMPAIPGSLTGSISASYNGKSYTANLPKDSGNAT 100

		

		Query: 375 TTVAGNQTLTASLPFTLQRQTLA----SLSFESAEPTQIRIKGAGGTGSSESSLVSFKVT 430

		            T + N T+  +     +  T+     S +F S         G   T  S +  V+F   

		Sbjct: 101 ITDSNNNTVKPAELEADKAYTVTVPDVSFNFGSEN------AGKEITIGSANPNVTFTEK 154

		

		Query: 431 SANGQPAAQQEVSFTLDTVVGGLSFANGTANAQSLTNSQGIASVRVLSGTVPT 483

		           + + QPA+  +V+   D V    S       A   T +  +    V +G   T

		Sbjct: 155 TGD-QPASTVKVTLDQDGVAKLSSVQIKNVYAIDTTYNSNVNFYDVTTGATVT 206

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 69.2 bits (169), Expect = 3e-16

		 Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 25/204 (12%)

		

		Query: 1   MKNNIITLAAIISLVSFSTYSHANSSNNIDVAQNGIYVGANYGYLKVDGADDFD------ 54

		           MK   I +A  ++L  F+T + A   +N        Y GA  G+ +       +      

		Sbjct: 1   MKKTAIAIA--VALAGFATVAQAAPKDNT------WYTGAKLGWSQYHDTGFINNNGPTH 52

		

		Query: 55  DNSDVFQGLVGYRFNQYLALEGGYINFGKY----GNNLAKAETDGYTAGLKVMFPIVDRV 110

		           +N        GY+ N Y+  E GY   G+            +  G     K+ +PI D +

		Sbjct: 53  ENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDL 112

		

		Query: 111 ELYAKAGQLWYSTDYKVVGFSGNKDDEGV--FAGAGVAFKVTDRFLINAEYTWYDAEINA 168

		           ++Y + G + +  D K     G   D GV      GV + +T       EY W +   +A

		Sbjct: 113 DIYTRLGGMVWRADTKSNV-YGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDA 171

		

		Query: 169 DNVANGANTETDFKQASLGVEYRF 192

		             +     T  D    SLGV YRF

		Sbjct: 172 HTI----GTRPDNGMLSLGVSYRF 191

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 70.4 bits (172), Expect = 4e-16

		 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

		

		Query: 281 KQEQQPIFRTNPKYPLSYAQQRKSGWVQLKFTVDEHGFVKNPEILASNGGILFEKESIKA 340

		               + + R  P+YP      R  G V++KF V   G V N +IL++    +FE+E   A

		Sbjct: 154 ASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNA 213

		

		Query: 341 LDKWRYAPKFENGKAVEAQTSVQLDYTID 369

		           + +WRY P       V     V + + I+

		Sbjct: 214 MRRWRYEPGKPGSGIV-----VNILFKIN 237

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 29.8 bits (67), Expect = 0.031

		 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 33/198 (16%)

		

		Query: 469 LQSVLTLIQQEVTRADSIISRLRNLLKK--RPVSKQPLYLHELVNETVPLLAYEFEQHQI 526

		           L ++  LI ++ T+A  +++ L  L++   R  + + + L + +      L     Q + 

		Sbjct: 179 LNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFED 238

		

		Query: 527 NLAVNVNGEPYLQSLDEVGMQQLLLN-LLKNAFDACVQRLELESSGTEQIITQKPYTPTI 585

		            L       P   ++ +V +  +L+  L++N                +  I Q P    I

		Sbjct: 239 RLQFENQINP---AIMDVQVPPMLVQTLVENGI--------------KHGIAQLPQGGKI 281

		

		Query: 586 DIDLRYQECTLLLTVTDNGTGLTEETSLLMQAFYSTKSEGLGLGLVICRDIAESHGGTFS 645

		            +       T+ L V + G+   + T          +S G GL  V  R +   +G    

		Sbjct: 282 LLKGTKDNGTVTLEVENTGSLALKNTK---------ESTGTGLQNVRER-LQMLYGTEAQ 331

		

		Query: 646 L--ESAMGGGCQAQVAIP 661

		           +      G    A V IP

		Sbjct: 332 IKLSEKQGKV-NAMVLIP 348

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 87.6 bits (217), Expect = 2e-22

		 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

		

		Query: 7   VYLIDDDDSVRRSLRFMLESYGLKIIDFDSAEAFFTAVDLTLPGCALVDVRMPGLSGQQL 66

		           + + DDD ++R  L   L   G  +    +A   +  +        + DV MP  +   L

		Sbjct: 6   ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65

		

		Query: 67  HLELVAKNSPLAVIYLTGHGDVPMAVDALKLGAVDFFQKPADGAKLAEAVVKALEHT--- 123

		              +      L V+ ++       A+ A + GA D+  KP D  +L   + +AL      

		Sbjct: 66  LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125

		

		Query: 124 -KAHHQDNQYLETYQALTPREREILNLIAQ 152

		                 D+Q        +   +EI  ++A+

		Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155

		

		

		>GPOSANCHOR#Gram-positive coccus surface protein anchor signature.

		          Length = 539

		

		 Score = 52.4 bits (125), Expect = 9e-09

		 Identities = 52/316 (16%), Positives = 101/316 (31%), Gaps = 10/316 (3%)

		

		Query: 598 EYAASEQELRIRLSKAEEALQSAQELQTEAESQLISINGELDNLSRELTFARTAYKNSRD 657

		                  EL   LS A+E L+   +  +E  S++  +     +L + L  A         

		Sbjct: 82  ALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSA 141

		

		Query: 658 DLRRLFDEKRSEQDKINKALSERKAHAGQRLTQLDGELKQLKHQHELWLEDQKEQALEAR 717

		            ++ L  EK        +     KA  G          K    + E    + ++  LE  

		Sbjct: 142 KIKTLEAEK---AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKA 198

		

		Query: 718 MEKNAYWQEVIGVLDNQLGQIKATIEGRRESAKIEQKACETWYKNELKSRGVDEDNILKL 777

		           +E    +          L   KA +  R+   +   +    +   +       E     L

		Sbjct: 199 LEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 258

		

		Query: 778 KQQIRELETKISRAEQRRSDVLRFDDWY-----QHTWLIRKPKLQTQLSDVKR-AVSEID 831

		           + +  ELE  +  A    +                       + Q+Q+ +  R ++    

		Sbjct: 259 EARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDL 318

		

		Query: 832 QQLKAKTLEVKTRRQKLDTELKASNAAQVEASENLTKLRAVMRKLAELKLPTNNEEAQGS 891

		              +    +++   QKL+ + K S A++     +L   R   ++L E +     E+ + S

		Sbjct: 319 DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQL-EAEHQKLEEQNKIS 377

		

		Query: 892 LGERLRQGEDLLLKRD 907

		              R     DL   R+

		Sbjct: 378 EASRQSLRRDLDASRE 393

		

		

		

		 Score = 32.3 bits (73), Expect = 0.011

		 Identities = 51/346 (14%), Positives = 118/346 (34%), Gaps = 27/346 (7%)

		

		Query: 360 WRTDVENLSERHKLQTEKHQDIEAAYNARRSKIGEQLNRELESLHSDQDKQREARDKQRE 419

		            +   +     +     K+ D+     A      +  N EL    S+  ++    DK   

		Sbjct: 55  VQERADKFEIENNTLKLKNSDLSFNNKAL-----KDHNDELTEELSNAKEKLRKNDKSLS 109

		

		Query: 420 VARADIDALEAQWRNQIDAGKASFSEQEYQFKLTAAELKLRVDGVTYTEEEKLSLAIFDE 479

		              + I  LEA+   + D  KA      +    +A    L  +       +       ++

		Sbjct: 110 EKASKIQELEAR---KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL----EK 162

		

		Query: 480 RIHRADEEQESCNAKVERLASDERKLRSKRDQANEALRIASLRVNERQAELDELHHML-- 537

		            +  A     + +AK++ L +++  L +++ +  +AL  A        A++  L      

		Sbjct: 163 ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAA 222

		

		Query: 538 FPESHTLLEFLRKEAQGWEQSLGKVIAPELLHRTDLHPSVTGSGDTLFGVHLDLKAIDVP 597

		                  LE   + A  +  +    I      +  L                +L+   + 

		Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA-----------ELEKA-LE 270

		

		Query: 598 EYAASEQELRIRLSKAEEALQSAQELQTEAESQLISINGELDNLSRELTFARTAYKNSRD 657

		                      ++   E    + +  + + E Q   +N    +L R+L  +R A K    

		Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330

		

		Query: 658 DLRRLFDEKRSEQDKINKALSERKAHAGQRLTQLDGELKQLKHQHE 703

		           + ++L ++ +   +   ++L      + +   QL+ E ++L+ Q++

		Sbjct: 331 EHQKLEEQNKI-SEASRQSLRRDLDASREAKKQLEAEHQKLEEQNK 375

		

		

		>SECFTRNLCASE#Bacterial translocase SecF protein signature.

		          Length = 333

		

		 Score = 30.6 bits (69), Expect = 0.012

		 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

		

		Query: 169 MSLAAIINLILDPLLIFGIGPFPRLEIQGAAIATLIAWVVALSLSSYLLIIKRKMLEWAV 228

		            +L A++ L+ D LL  G+    +L+     +A L+  +   S++  +++          

		Sbjct: 178 FALGAVVALVHDVLLTVGLFAVLQLKFDLTTVAALLT-ITGYSINDTVVV---------- 226

		

		Query: 229 FDIDRMRANWSKLAHIAQPAALMNLINP-LANAVIMAMLAHIDHSAVAAFGAGT 281

		              DR+R N  K   +     +   +N  L+  V+  M   +    +  +G   

		Sbjct: 227 --FDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDV 278

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 40.2 bits (94), Expect = 1e-05

		 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 1/153 (0%)

		

		Query: 221 APAYASNLGLPPEKVATYMTATILAGLLAQWPMGKLSDIMPRSRLIRINCVLLGILALGI 280

		            P  A++   PP       TA +L   +     GKLSD +   RL+    ++    ++  

		Sbjct: 37  LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96

		

		Query: 281 ALTPYHPVISLVMTFLFGILGFTFYPLATALANSRVEQSERVGLSATILLTFGLGASIGP 340

		            +      + ++  F+ G     F  L   +    + +  R      I     +G  +GP

		Sbjct: 97  FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156

		

		Query: 341 LIASTLMQWLGNNMLYGFMSACTLVLFLRLRYV 373

		            I   +  ++  + L       T++    L  +

		Sbjct: 157 AIGGMIAHYIHWSYLLLIPMI-TIITVPFLMKL 188

		

		

		

		 Score = 32.5 bits (74), Expect = 0.003

		 Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

		

		Query: 213 IVGSFYGLAPAYASNLGLPPEKVATYMTATILAGLLAQWPMGKLSDIMPRSRLIRINCVL 272

		           ++   + L+ A   ++ + P        + I+ G +     G L D      ++ I    

		Sbjct: 282 MMKDVHQLSTAEIGSVIIFPG-----TMSVIIFGYIG----GILVDRRGPLYVLNIGVTF 332

		

		Query: 273 LGILALGIALTPYHP--VISLVMTFLFGILGFTFYPLATALANSRVEQSERVGLSATILL 330

		           L +  L  +         +++++ F+ G L FT   ++T +++S  +Q    G+S     

		Sbjct: 333 LSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFT 392

		

		Query: 331 TFGLGASIGPLIASTLM 347

		           +F L    G  I   L+

		Sbjct: 393 SF-LSEGTGIAIVGGLL 408

		

		

		>V8PROTEASE#V8 serine protease family signature.

		          Length = 336

		

		 Score = 47.3 bits (112), Expect = 1e-07

		 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

		

		Query: 650 SVPVNFLS-SVDTTGGNSGSPVFNGKGELVGLNFDSTYEAITKDWFFNPTI 699

		            +    +   + TTGGNSGSPVFN K E++G+++           F N  +

		Sbjct: 220 YLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENV 270

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score =  433 bits (1114), Expect = e-154

		 Identities = 155/350 (44%), Positives = 218/350 (62%), Gaps = 6/350 (1%)

		

		Query: 6   RAEISSSALQNNLAVLRQQASASQVMAVVKANGYGHGLLNVANCLVNADGFGLARLEEAL 65

		           +A +   AL+ NL+++RQ A+ ++V +VVKAN YGHG+  + + +   DGF L  LEEA+

		Sbjct: 6   QASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEAI 65

		

		Query: 66  ELRAGGVKARLLLLEGFFRSTDLPLLVAHDIDTVVHHESQIEMLEQVKLTKPVTVWLKVD 125

		            LR  G K  +L+LEGFF + DL +   H + T VH   Q++ L+  +L  P+ ++LKV+

		Sbjct: 66  TLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVN 125

		

		Query: 126 SGMHRLGVTPEQFATVYARLMACPNIAKPIHLMTHFACADEPDNHYTDVQMAAFNELTAG 185

		           SGM+RLG  P++  TV+ +L A  N+   + LM+HFA A+ PD       MA   +   G

		Sbjct: 126 SGMNRLGFQPDRVLTVWQQLRAMANV-GEMTLMSHFAEAEHPDGISG--AMARIEQAAEG 182

		

		Query: 186 LPGFRTLANSAGALYWPKSQGDWIRPGIALYGVSPVA--GDCGTNHGLIPAMNLVSRLIA 243

		           L   R+L+NSA  L+ P++  DW+RPGI LYG SP     D   N GL P M L S +I 

		Sbjct: 183 LECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDI-ANTGLRPVMTLSSEIIG 241

		

		Query: 244 VRDHKANQPVGYGCYWTAKQDTRLGVVAIGYGDGYPRNAPEGTPVWVNGRRVPIVGRVSM 303

		           V+  KA + VGYG  +TA+ + R+G+VA GY DGYPR+AP GTPV V+G R   VG VSM

		Sbjct: 242 VQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVSM 301

		

		Query: 304 DMLTVDLGQDATDKVGDDVLLWGQDLPVEEVAERIGTIAYELVTKLTPRV 353

		           DML VDL       +G  V LWG+++ +++VA   GT+ YEL+  L  RV

		Sbjct: 302 DMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRV 351

		

		

		>ANTHRAXTOXNA#Anthrax toxin LF subunit signature.

		          Length = 800

		

		 Score = 29.3 bits (65), Expect = 0.025

		 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 31/116 (26%)

		

		Query: 137 DAMKQVVDIPVTVKTRIGIDE---------QDSYEFLT------YFIDIVNAKGCTDFTI 181

		           D++  +V    T +T   I +         +D  E  +      YF DI       D   

		Sbjct: 61  DSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEIYSELGGEIYFTDI-------DLVE 113

		

		Query: 182 HARKAWLQGLSPKENR------EIPPLDYERVYQLKRDYPVLNISINGGVTTLEQA 231

		           H     LQ LS +E        E  P     V++ KR+ P L I+I       EQ+

		Sbjct: 114 HKE---LQDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQS 166

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 40.6 bits (95), Expect = 6e-06

		 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 7/202 (3%)

		

		Query: 24  LDFYGRLWLGVANSSN----GLSGNEKVDGFSLENYASYLGVKGEYAAYDNFSLLYKFEA 79

		           +  YG +  GV  S +    G        G  + +  S +G KG+    +    +++ E 

		Sbjct: 21  VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQ 80

		

		Query: 80  GIESFDNDDSNIFKPRNAYLGFKTNYGSAVFGRNDTVFKSAEGKVDLFNITSSDMNMIIA 139

		                  D       R +++G K  +G    GR ++V K         + +       IA

		Sbjct: 81  KASIAGTDSGW--GNRQSFIGLKGGFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIA 138

		

		Query: 140 GNDRLGDSVTLNSAKFVGVTMGISYVFDKDFNQKNPELSDKQNNYAVSFTVGDASLKNKN 199

		             +    SV  +S +F G++  + Y  + +  + N E      NY             K 

		Sbjct: 139 EPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKR 198

		

		Query: 200 HYISIAYADGLNLLEATRLVGG 221

		           H+      +     +  RLV G

		Sbjct: 199 HHQVQENVNIEK-YQIHRLVSG 219

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 35.8 bits (82), Expect = 0.001

		 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

		

		Query: 6    DVAQLKAELAQLQSLHLSQQSSLSRQLAEFSTKLETLSQQIATEDATETTLNMAASASSI 65

		            +VAQ  +E  + Q+    +    +    E   K+ET   Q   +  ++ +     S +  

		Sbjct: 1084 EVAQSGSETKETQTT---ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140

		

		Query: 66   ASVLTAADNAPTLT---YAAQTPTLEPASVAPA---PAEPNPWQQNAWQEDPWQRKTKNT 119

		                 A +N PT+      +QT T    +  PA    +        +   +      +N 

		Sbjct: 1141 PQAEPARENDPTVNIKEPQSQTNT-TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199

		

		Query: 120  STEQTAKTEHQAQDQQLSDEVKLQASVQVASQ 151

		                 A T+    + + S++ K +    V S 

		Sbjct: 1200 ENTTPATTQPTV-NSESSNKPKNRHRRSVRSV 1230

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 74.9 bits (184), Expect = 9e-18

		 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 2/135 (1%)

		

		Query: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLS 68

		            +L+ +DD  +  ++   L   G  V +     T+   +     D+++ D+++P  +   

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 69  LCEKLPDYFAG-PILLMSALGSTEDQIKGLELGADDYVVKPVDPALLVARIHNLL-RRQN 126

		           L  ++       P+L+MSA  +    IK  E GA DY+ KP D   L+  I   L   + 

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

		

		Query: 127 QPPQAESHCLTFGKL 141

		           +P + E        L

		Sbjct: 125 RPSKLEDDSQDGMPL 139

		

		

		>CHANLCOLICIN#Channel forming colicin signature.

		          Length = 522

		

		 Score = 31.2 bits (70), Expect = 0.013

		 Identities = 37/218 (16%), Positives = 81/218 (37%), Gaps = 6/218 (2%)

		

		Query: 289 KRMQQQQAETEQTATAMNEMTATVAEVAQSAAAAADSAKDADTYAANGNSIVMQSIDSMS 348

		           K +++++AETE+           +A +++ A A   + K      +    +  +     S

		Sbjct: 158 KEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNS 217

		

		Query: 349 QLSDQIQKTAKVIGFLANESQNIGRVLDVIKSIAEQTNLLALNAAIE-AARAGEQGRGFA 407

		           +LS  I      +  LA +   + +     K + E    L+  A      R   +     

		Sbjct: 218 RLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRR 277

		

		Query: 408 VVADEVRTLAQRTQKSTQE----IEAMIATLQQGVKEAVSAMEIGIHQVDDANDKANQAG 463

		           V A ++R   Q+   +++     I A I  +Q+ + +  +    GI +V +A +   +A 

		Sbjct: 278 VGAGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQ 337

		

		Query: 464 QALKEIVTSVDSITELNTHIATAAEEQSSVAESINRSI 501

		             L       D++    +   T  E+       + + +

		Sbjct: 338 NNLLNSQIK-DAVDATVSFYQTLTEKYGEKYSKMAQEL 374

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 41.4 bits (97), Expect = 1e-05

		 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 30/180 (16%)

		

		Query: 552 LEGEREKLLQMEVALHER--VIGQNEAVDAVANAIRRSRAGLADPNRPIGSFLFLGPTGV 609

		           L   + +  ++E    +   ++G++ A+  +   + R    L   +  +   +  G +G 

		Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGT 171

		

		Query: 610 GKTELCKSLARFLFDTESALVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRK 669

		           GK  + ++L  +        V I+M+        S L G       +E+G + T A  R 

		Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFG-------HEKGAF-TGAQTRS 223

		

		Query: 670 PYSV-------ILLDEVEKAHPDVFNILLQVLDDG---RLTDGQGRTVDFRNTVIIMTSN 719

		                      + LDE+     D    LL+VL  G    +        D R   I+  +N

		Sbjct: 224 TGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280

		

		

		

		 Score = 31.0 bits (70), Expect = 0.020

		 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

		

		Query: 151 DPNAEDQRQALKKFTIDLTERAEQG-KLDPVIGRDDEIRRTIQVLQRRSKNN-PVLI-GE 207

		                   +AL +     ++  +      P++GR   ++   +VL R  + +  ++I GE

		Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168

		

		Query: 208 PGVGKTAI 215

		            G GK  +

		Sbjct: 169 SGTGKELV 176

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 30.2 bits (68), Expect = 0.002

		 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 2/24 (8%)

		

		Query: 13 QQGFSLIEVLVALVIL--VIGLIG 34

		          Q+GF+L+E++V +VI+  +  L+ 

		Sbjct: 7  QRGFTLLEIMVVIVIIGVLASLVV 30

		

		

		>PF05307#Bundlin

		          Length = 193

		

		 Score = 27.8 bits (61), Expect = 0.049

		 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 11/101 (10%)

		

		Query: 13  YQTGLSLVELMVAMVIGLFLTAGVFTMFSMSSSNVTTTSQFNQLQENGRIALAILERDLS 72

		           Y+ GLSL+E  + + +   +TAGV  MF   S++ +  SQ N + E      AI    + 

		Sbjct: 10  YEKGLSLIESAMVLALAATVTAGV--MFYYQSASDSNKSQ-NAISEVMSATSAINGLYIG 66

		

		Query: 73  QLGFMGDMTGTDFVLGSNTQVNIAAVANDCVGDGLNNATLP 113

		           Q  + G        L SN  +N +A+ ++      N  T P

		Sbjct: 67  QTSYTG--------LNSNILLNTSAIPDNYKDTKNNKITNP 99

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 58.0 bits (140), Expect = 6e-14

		 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

		

		Query: 5  RGFTLIELMITVAIVGILAAIAYPSYIEYVTKSGRSEGVAAVMRVANLQEQYYLDNKAYA 64

		          RGFTL+E+M+ + I+G+LA++  P+ +    K+ + + V+ ++ + N  + Y LDN  Y 

		Sbjct: 8  RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHYP 67

		

		Query: 65 TDMTKLGLSA 74

		          T  T  GL +

		Sbjct: 68 T--TNQGLES 75

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 35.6 bits (82), Expect = 2e-05

		 Identities = 12/28 (42%), Positives = 19/28 (67%)

		

		Query: 6  TGFTLVELMVTIAVAAILLSIGAPSLIS 33

		           GFTL+E+MV I +  +L S+  P+L+ 

		Sbjct: 8  RGFTLLEIMVVIVIIGVLASLVVPNLMG 35

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 29.5 bits (66), Expect = 0.003

		 Identities = 10/27 (37%), Positives = 20/27 (74%)

		

		Query: 5  QKGFSLIELITTLSISTILLTVGVPSL 31

		          Q+GF+L+E++  + I  +L ++ VP+L

		Sbjct: 7  QRGFTLLEIMVVIVIIGVLASLVVPNL 33

		

		

		>PF00577#Outer membrane usher protein FimD

		          Length = 878

		

		 Score = 38.7 bits (90), Expect = 1e-05

		 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

		

		Query: 104 LSYDITLY--RYNYSGESDLGYFEVTAGVEFKGFRL-AYWFTNDYGGSDLDYHYTELNYS 160

		           L+Y+ +    +    G S   Y  + +G+    +RL      +            +  + 

		Sbjct: 187 LNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHI 246

		

		Query: 161 YTFVENWNLDLHYGYNAGDALDDGEGFDSYSDYSIGVSTEFA 202

		            T++E   + L      GD    G+ FD  +     ++++  

		Sbjct: 247 NTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDN 288

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  369 bits (948), Expect = e-126

		 Identities = 160/450 (35%), Positives = 224/450 (49%), Gaps = 38/450 (8%)

		

		Query: 40  LAQLEANHVDVAVIEFPCLSHEDYLDLMK--NAAMSGIEFIFLSNGQPNPNLDKLMAQYA 97

		              + A   D+ V +   +  E+  DL+     A   +  + +S         K   + A

		Sbjct: 40  WRWIAAGDGDLVVTDVV-MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA 98

		

		Query: 98  GYHLRKPYDMSLISSILIDFAQHLVASSPSRSSPFLSELDQYGLLVGSSAPMHKLYRTIR 157

		             +L KP+D++ +    I      +A    R S    +      LVG SA M ++YR + 

		Sbjct: 99  YDYLPKPFDLTEL----IGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154

		

		Query: 158 RVSVTDSNVLIIGESGVGKELVANTIHLASPRVNEPFIAINCGALSPELVDSELFGHVKG 217

		           R+  TD  ++I GESG GKELVA  +H    R N PF+AIN  A+  +L++SELFGH KG

		Sbjct: 155 RLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKG 214

		

		Query: 218 AFTGANRDHKGVFEQAEGGTLFLDEITEMPIEHQVKLLRVLENNEYRPVGGDKVLHSDVR 277

		           AFTGA     G FEQAEGGTLFLDEI +MP++ Q +LLRVL+  EY  VGG   + SDVR

		Sbjct: 215 AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR 274

		

		Query: 278 IVAATNRDPLAAIEAGLFREDLYFRLAQFPIRVPPLRVRGEDIIGLAQHFLAYRNVAEKQ 337

		           IVAATN+D   +I  GLFREDLY+RL   P+R+PPLR R EDI  L +HF+         

		Sbjct: 275 IVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLD 334

		

		Query: 338 CKVFSEESLRMIAANRWTGNVRELKHAVERAYILA-DQEILPSHLQLEQEIDNAKIAEEE 396

		            K F +E+L ++ A+ W GNVREL++ V R   L     I    ++ E   +      E+

		Sbjct: 335 VKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEK 394

		

		Query: 397 VIIPQG------------------------------MRLDDLEKIAIYQALESSNGNKTD 426

		                G                                L ++E   I  AL ++ GN+  

		Sbjct: 395 AAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIK 454

		

		Query: 427 TAEQLGISVKTLYNKLSKYEQQVEAGEPTA 456

		            A+ LG++  TL  K+ +    V     +A

		Sbjct: 455 AADLLGLNRNTLRKKIRELGVSVYRSSRSA 484

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 36.9 bits (85), Expect = 7e-04

		 Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 8/126 (6%)

		

		Query: 1181 PAVASQPRATAPAPASVDPAPVAATTMPHNAAPVTQAVATEAVSTPV-APVVQTAPVAYS 1239

		            PA    P+A         P PV          P     A   +  P   P  +  PV   

		Sbjct: 57   PADLEPPQA-----VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 111

		

		Query: 1240 PAVTVQVAPAAPALVMPAVVMPEVTPAAPATSGLSAGLVQASEIESTMMAVVADKTGYPT 1299

		                  V P       P        P +   +  ++     + + S   A+  ++  YP 

		Sbjct: 112  EQPKRDVKPVESRPASPFENTAPARPTSSTATAATSK--PVTSVASGPRALSRNQPQYPA 169

		

		Query: 1300 EMLELG 1305

		                L 

		Sbjct: 170  RAQALR 175

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 30.1 bits (68), Expect = 0.007

		 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

		

		Query: 171 LTAFIEALSPRIAPPVKHEELPMPALDHPGIFANIKRMWQNLFG 214

		           L  +I+AL   +    K   LP+   D     A+ K +   + G

		Sbjct: 268 LMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKAL-YEVIG 310

		

		

		>STREPKINASE#Streptococcus streptokinase protein signature.

		          Length = 440

		

		 Score = 28.5 bits (63), Expect = 0.034

		 Identities = 16/51 (31%), Positives = 24/51 (47%)

		

		Query: 1   MKDIVVIDKRAIALTLTKQDLLEVVNIAKAAGDAIMAIYEQDDVVVSHKGD 51

		           +KD  ++   AI  T+T Q+LL               IYE+D  +V+H  D

		Sbjct: 205 LKDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGYTIYERDSSIVTHDND 255

		

		

		>ACETATEKNASE#Acetate kinase family signature.

		          Length = 400

		

		 Score = 31.3 bits (71), Expect = 0.005

		 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

		

		Query: 204 SGALAKSG--ADIMALVDK----GDIIAMAAFERYVDRLARALAHVINLLDP-DAIVLGG 256

		           SG    SG  +D   L D     GD  A  A   +  R+ + +      +   D IV   

		Sbjct: 271 SGVYGISGISSDFRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTA 330

		

		Query: 257 GM 258

		           G+

		Sbjct: 331 GI 332

		

		

		>SACTRNSFRASE#Streptothricin acetyltransferase signature.

		          Length = 173

		

		 Score = 28.8 bits (64), Expect = 0.007

		 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

		

		Query: 43  QGHTCRAIYQNDKPVGFFMWVSETPEKVSIWRFMVDQRYQQSGIGRVALNLALNEIKASD 102

		           +G      Y  +  +G     S       I    V + Y++ G+G   L+ A+ E    +

		Sbjct: 63  EGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAI-EWAKEN 121

		

		Query: 103 KVKEIEICYDPENPVAKDFYSRFGFQEVGLD 133

		               + +     N  A  FY++  F    +D

		Sbjct: 122 HFCGLMLETQDINISACHFYAKHHFIIGAVD 152

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 77.0 bits (189), Expect = 2e-19

		 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

		

		Query: 31  SSDARQRLIIAALSLFSHRSYPTVSTREIAREAGVDAALIRYYFGSKAGLFEQMVRETLE 90

		           + + RQ ++  AL LFS +   + S  EIA+ AGV    I ++F  K+ LF ++   +  

		Sbjct: 9   AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68

		

		Query: 91  PVLARLREISAAQAPNN---MSELMQTYYRVMAPNPGLPRLIMRVLQEGDGTEPYHIMLS 147

		            +     E  A    +    + E++               L+  +  + +      ++  

		Sbjct: 69  NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128

		

		Query: 148 VFDHILSLSRQWLESTL---VNAGYLKEGIDPDLVRLSFVSLM 187

		              ++   S   +E TL   + A  L   +      +     +

		Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 57.1 bits (138), Expect = 3e-11

		 Identities = 44/318 (13%), Positives = 98/318 (30%), Gaps = 77/318 (24%)

		

		Query: 33  TVERDRLTLTAPVGELITQINVVEGQRVKAGEVLIQLDATSANA---------------- 76

		           T       +      ++ +I V EG+ V+ G+VL++L A  A A                

		Sbjct: 91  THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150

		

		Query: 77  ---RLALRQAELDQAKAKLSEAVTGARLE----------------------------DID 105

		              ++  R  EL++            +                              ++D

		Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210

		

		Query: 106 RAKAVLDGANATVKEAQRAFERTN-------RLFATKVLS--------------QADLDT 144

		           + +A      A +   +               L   + ++                +L  

		Sbjct: 211 KKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRV 270

		

		Query: 145 ARAARDTSLAKQAEAQQSLRLLENGTRSE---QLAQAKAAVAAASASVAVEQKALADLSL 201

		            ++  +   ++   A++  +L+    ++E   +L Q    +   +  +A  ++      +

		Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330

		

		Query: 202 VAARDAVVDTLP-WREGDRIAAGTQLIGLLASDNPY-VRVYLPATWLDRVKVGDSVNILV 259

		            A     V  L    EG  +     L+ ++  D+   V   +    +  + VG +  I V

		Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390

		

		Query: 260 DG----REAPIAGTVRNI 273

		           +     R   + G V+NI

		Sbjct: 391 EAFPYTRYGYLVGKVKNI 408

		

		

		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 30.6 bits (69), Expect = 0.007

		 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 12/87 (13%)

		

		Query: 220 SPQQLMAAMGARVIEVSGDDLRT---------LKQSLMSESA---VLSAAQIGSRLRVLV 267

		            P+ +     A +I  +G +L T         ++ +   E+     +S       L    

		Sbjct: 73  LPEDVKKTSQADLIFYNGINLETGGNAWFTKLVENAKKKENKDYYAVSEGVDVIYLEGQS 132

		

		Query: 268 RSDIADPLAWLKPKIANRAMEEVRASL 294

		                DP AWL  +      + +   L

		Sbjct: 133 EKGKEDPHAWLNLENGIIYAQNIAKRL 159

		

		

		>ABC2TRNSPORT#ABC-2 type transport system membrane protein

		           signature.

		          Length = 262

		

		 Score = 38.8 bits (90), Expect = 2e-05

		 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)

		

		Query: 186 GVILTMTMVMFT----SAAIVREREQGNMEFLITTPVRPLELMLGKIVPYVLVGFVQVTI 241

		           G++ T  M   T     AA  R   Q   E ++ T +R  +++LG++        +    

		Sbjct: 72  GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131

		

		Query: 242 ILSAGHLLFDVP---IRGGLDSIALAAMLFICASLTLGLVISTMAKTQLQSMQMTVFVLL 298

		           I      L       +   L  IAL  + F     +LG+V++ +A +    +     V+ 

		Sbjct: 132 IGVVAAALGYTQWLSLLYALPVIALTGLAFA----SLGMVVTALAPSYDYFIFYQTLVIT 187

		

		Query: 299 PSILLSGFMFPFDAMPIAAQWIAEALPATHFMRMSRAIVL 338

		           P + LSG +FP D +PI  Q  A  LP +H + + R I+L

		Sbjct: 188 PILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIML 227

		

		

		>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature.

		          Length = 1291

		

		 Score = 32.3 bits (73), Expect = 0.007

		 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 23/150 (15%)

		

		Query: 247 TALNYNGSTFK--NEYNQLSFDSAFNPNYVTAQNNTGTMALDPDNQSHTVSLMGQYNDNT 304

		            A    G   K  ++ +  + ++A N    ++QNN+ T  ++P N +    +       T

		Sbjct: 324 IAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEI-----QPT 378

		

		Query: 305 NVISGRFLAG--------QMSQDQALVTDNYIYANQLATNAVDAKVDLLGINLK------ 350

		            VI G F  G        +++ +         +   L TNA    +   GINL       

		Sbjct: 379 QVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAAHLHIGKGGINLSNQASGR 438

		

		Query: 351 --LVSKVTNSLRLSGSYDYHDRDNNTLIEG 378

		             LV  +T ++ + G    +++     + G

		Sbjct: 439 SLLVENLTGNITVDGPLRVNNQVGGYALAG 468

		

		

		>PF00577#Outer membrane usher protein FimD

		          Length = 878

		

		 Score = 29.8 bits (67), Expect = 0.043

		 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

		

		Query: 358 TDSKGAPVDITALLP-QIQRVEIITNVGPNNITLSYFTKDSVIAVKNGVLDSNASIVDGK 416

		           TD +G  V +      +  RV + TN   +N+ L     + V      V     + V  K

		Sbjct: 739 TDWRGYAV-LPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIK 797

		

		Query: 417 LLYTTT---KPLPFGAAKTD-TDTSVTFVNWA 444

		           LL T T   KPLPFGA  T  +  S   V   

		Sbjct: 798 LLMTLTHNNKPLPFGAMVTSESSQSSGIVADN 829

		

		

		>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family

		           signature.

		          Length = 639

		

		 Score = 42.5 bits (100), Expect = 6e-06

		 Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 62/219 (28%)

		

		Query: 14  NAGKSTLFNAL---TGANQQVG---------NW------SGVTVEKKTGHFTLNGADVYL 55

		           +AGK+TL  +L   +GA  ++G         +        G+T++     F      V +

		Sbjct: 13  DAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNI 72

		

		Query: 56  TDLPGIYDLLPAGNSCDCSLDEQIAQQYLAEQRIDGIINLVDA-------TNIERHLYLT 108

		            D PG  D               +A+ Y +   +DG I L+ A       T I     L 

		Sbjct: 73  IDTPGHMDF--------------LAEVYRSLSVLDGAILLISAKDGVQAQTRI-----LF 113

		

		Query: 109 AQLRELAIPMVVVLNKIDAAIKRGIKVD--LQKMSQELGCPVI---------GVCSRDPA 157

		             LR++ IP +  +NKID     GI +    Q + ++L   ++          +C  +  

		Sbjct: 114 HALRKMGIPTIFFINKIDQN---GIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFT 170

		

		Query: 158 DVEKVQAQVL---DLLQGRVSEAPL-MLDYDEQIEAGVQ 192

		           + E+    +    DLL+  +S   L  L+ +++      

		Sbjct: 171 ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFH 209

		

		

		>ECOLIPORIN#E.coli/Salmonella-type porin signature.

		          Length = 383

		

		 Score = 85.7 bits (212), Expect = 1e-20

		 Identities = 106/417 (25%), Positives = 167/417 (40%), Gaps = 53/417 (12%)

		

		Query: 1   MNKTLVATALAAIFLAPSVSAIEIYKDDKNAVEIGGFIDVRVINTQGETEVVNG-ASRIN 59

		           M + ++A  + A+  A +  A EIY  D N +++ G +D     +   ++  +G  + + 

		Sbjct: 1   MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYFSDDSSK--DGDQTYMR 58

		

		Query: 60  FGFSRE--LTNGWNAFAKLEWGVNPVGSSDIVYNNRFESVQDEFFYNRLGYAGLSHDQYG 117

		            GF  E  + +    + + E+ V           N  E      +  RL +AGL    YG

		Sbjct: 59  VGFKGETQINDQLTGYGQWEYNVQ---------ANTTEGEGANSW-TRLAFAGLKFGDYG 108

		

		Query: 118 TITIGKQWGAWYDVVYSTNYGFVWDGNTAGVYTFNKDDGAVNGVGRGDKTVQYRNA--FG 175

		           +   G+ +G  YDV   T+    + G++   Y  N   G  NGV        YRN   FG

		Sbjct: 109 SFDYGRNYGVLYDVEGWTDMLPEFGGDSYT-YADNYMTGRANGV------ATYRNTDFFG 161

		

		Query: 176 ---DFSFAVQAQLKNSSFFTCDIENITENECEARWIE---GGADAQQVTYDYTYGGALTY 229

		                +FA+Q Q KN S    D+   T N      I    G       TYD   G +   

		Sbjct: 162 LVDGLNFALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAGA 221

		

		Query: 230 KVTEMLSVSAGVNRGEFDIDYGNGDQKTAVDLIYGAGITWGNFDNNGLYIAA------NV 283

		             T     +  VN G        GD+  A    + AG+    +D N +Y+A       N+

		Sbjct: 222 AYTTSDRTNEQVNAGG---TIAGGDKADA----WTAGL---KYDANNIYLATMYSETRNM 271

		

		Query: 284 NKQENHDTDNIGRLIKDAQGAETLVSYKFDNGLRPFISYNVLDAGKDYVIQPNFNADPDD 343

		                 D    G +    Q  E    Y+FD GLRP +S+ ++  GKD         D D 

		Sbjct: 272 TPYGKTDKGYDGGVANKTQNFEVTAQYQFDFGLRPAVSF-LMSKGKDLTYNNVNGDDKDL 330

		

		Query: 344 VFKRQFVVVGLHFVWDPNTVLYVEARKDYSDFTSTDKVQEARMSLSEDDGIAIGIRY 400

		           V   ++  VG  + ++ N   YV+ + +  D    D   +    +S DD +A+G+ Y

		Sbjct: 331 V---KYADVGATYYFNKNFSTYVDYKINLLD--DDDPFYKD-AGISTDDIVALGMVY 381