>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 175 bits (445), Expect = 2e-54 Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 35/348 (10%) Query: 3 KILVTGGAGYIGSHTCIELLDAGHEVVVFDNLSNSSEESLN--RVQDITQKSLAFVQGDI 60 K LVTG AG+IG H LL+AGH+VV DNL++ + SL R++ + Q F + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 61 RNAGELDRVFQTHSIDAVIHFAGLKAVGESQEKPLIYFDNNIAGSIQLVKSMVKAKVYTL 120 + + +F + + V AV S E P Y D+N+ G + +++ K+ L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 121 VFSSSAAVYDESNTSPLNEDMPTGIPSNNYGYTKLIVEQLLQKLSASNPEWSIALLRYFN 180 +++SS++VY + P + D P + Y TK E + S LR+F Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-LYGLPATGLRFFT 180 Query: 181 PVGAHKSGRIGEDPQGIPNNLMPYVTQVAVGRREKLSIYGNDYDTVDGTGVRDYIHVVDL 240 G P G P+ + T+ A+ + + +Y G RD+ ++ D+ Sbjct: 181 VYG----------PWGRPDMALFKFTK-AMLEGKSIDVYN------YGKMKRDFTYIDDI 223 Query: 241 ANAHLCALNNRLQSKGC---------------RAWNIGTGNGSSVLQVKDTFQQVNGIPV 285 A A + + + R +NIG + ++ + GI Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283 Query: 286 AFEFVERRAGDVATSFADNSRAVAELGWQPQHSLEDMLKDSWNWQKQN 333 + + GDV + AD +G+ P+ +++D +K+ NW + Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>PF04183#IucA / IucC family Length = 580 Score = 29.1 bits (65), Expect = 0.050 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 17/90 (18%) Query: 465 ALRRNDREWVEQLPAEMEKNIIHKLYYGHFFCHVFHQDYILKK-GHDPLEMEHQMWKLLD 523 +L + R+ +L A+ +IH L GHF + ++ + G E + ++LL Sbjct: 459 SLPQEVRDVTSRLSADY---LIHDLQTGHFVTVLRFISPLMVRLGVP----ERRFYQLLA 511 Query: 524 ARRAEYPAEHNVGHLYIAKPALANFYQKLD 553 A ++Y +H P ++ + Sbjct: 512 AVLSDYMKKH---------PQMSERFALFS 532
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 33.2 bits (75), Expect = 0.001 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 232 LALYPLSAFRAMNK----AAETVYETLRKEGTQKNVVDIMQTRKEL 273 L LY F MNK E + E+L+KEG +K+ +D+++ K L Sbjct: 257 LELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKAL 302
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 378 bits (972), Expect = e-133 Identities = 184/364 (50%), Positives = 242/364 (66%), Gaps = 10/364 (2%) Query: 1 MPRPITAVIHRQALQNNLAVVRKAMPNSKVFAVVKANAYGHGIERVYEAFKAADGFALLD 60 M RPI A + QAL+ NL++VR+A +++V++VVKANAYGHGIER++ A A DGFALL+ Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN 60 Query: 61 LDEAKKVRALGWTGPILLLEGIFSPQDLFDCVQYQLSFTIHSEAQIEWVQKHPYPAQFDV 120 L+EA +R GW GPIL+LEG F QDL Q++L+ +HS Q++ +Q A D+ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI 120 Query: 121 CLKMNSGMNRLGFKPQQYVQAWERLNNLANVSKITHMMHFSDADGDRFGQQGIDYQITAF 180 LK+NSGMNRLGF+P + + W++L +ANV ++T M HF++A+ GI + Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAE----HPDGISGAMARI 176 Query: 181 EDIIKDLPGERSVSNSAAILRYQDQLKSDYARSGIMLYGSSPDYPTHSIADWGLQPTMSL 240 E + L RS+SNSAA L + + D+ R GI+LYG+SP IA+ GL+P M+L Sbjct: 177 EQAAEGLECRRSLSNSAATLWHPE-AHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235 Query: 241 RSEIISIQHLDANESVGYGSNFVAEQAMTIGIVACGYADGYQRISPTGTPVLVDSVRTRT 300 SEII +Q L A E VGYG + A IGIVA GYADGY R +PTGTPVLVD VRT T Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMT 295 Query: 301 VGRVSMDMLAVDLTGIENAKVGSEVVLWGQSSTGVILPIDDVAVSSGTVGYELMCAVTAR 360 VG VSMDMLAVDLT A +G+ V LWG+ + IDDVA ++GTVGYELMCA+ R Sbjct: 296 VGTVSMDMLAVDLTPCPQAGIGTPVELWGKE-----IKIDDVAAAAGTVGYELMCALALR 350 Query: 361 VQFI 364 V + Sbjct: 351 VPVV 354
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.043 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 20/121 (16%) Query: 75 LGGLVFGHFGDKIGRKSMLLLTLMLMGIPTVLIGLLPTYESIGYWAAIGLVILRFIQGMA 134 +G V+G D++G K +LL +++ +V+ + ++ S+ L++ RFIQG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQG-- 114 Query: 135 MGGEWGGAVLMAV------EHAPEGGKGFWGSLPQASTG-----GGLMLASIALGLVSLL 183 G A++M V + G GS+ G GG++ I + L+ Sbjct: 115 AGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174 Query: 184 P 184 P Sbjct: 175 P 175
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 128 bits (323), Expect = 1e-39 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 5/144 (3%) Query: 26 SYRYKVFVEHLGWELNCPNNEELDQFDKVDTAYVVAQDRESNIIGCARLLPTTQPYLLGE 85 + R + F + L W + C + E DQ+D +T Y+ ++ +I R + T P ++ Sbjct: 22 TLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIK-DNTVICSLRFIETKYPNMITG 80 Query: 86 IFPQLMNGMPIPCSPEIWELSRFSAVDFSNPPTSANQAVSSPVSVAILQEAINFAREQGA 145 F + IP E SRF VD S P+S + IN+++++G Sbjct: 81 TFFPYFKEINIPEGN-YLESSRF-FVDKSRAKDILGNE--YPISSMLFLSMINYSKDKGY 136 Query: 146 KQLITTSPLGVERLLRAAGFRAHR 169 + T + +L+ +G+ Sbjct: 137 DGIYTIVSHPMLTILKRSGWGIRV 160
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 85.3 bits (211), Expect = 8e-19 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 15/233 (6%) Query: 722 QRYAKITILLKTGSN-----HRIKEILESLKTYMAGQLGDKAVVSFGGDVTQTIALTETM 776 + A + I L TG+N IK L L+ + G K + + D T + + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ--GMKVLYPY--DTTPFV---QLS 336 Query: 777 VHGKLMNILQISFAVFFISALVFRSLSAGLIVLTPLLFSILAIFGVMGWLDIPLNIPNSL 836 +H + + + VF + L +++ A LI + +L F ++ +N Sbjct: 337 IHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF 396 Query: 837 ISAMAVGIGADYAIYFLYRLREILREEGGDIKDAIRKTLSTAGKASLFVATAVAGGYGVL 896 +A+G+ D AI + + ++ E+ K+A K++S A + +A ++ + + Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 897 SLSQG--FHVHQWLAMFIVIAMLFSVFATLIMVPTM-ILILKPRFIFPSNKKN 946 + G +++ ++ IV AM SV LI+ P + +LKP K Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKG 509 Score = 60.6 bits (147), Expect = 3e-11 Identities = 27/156 (17%), Positives = 63/156 (40%), Gaps = 10/156 (6%) Query: 789 FAVFFISALVFRSLSAGLIVLTPLLFSILAIFGVMGWLDIPLNIPNSLISAMAVGIGADY 848 VF A ++ S S + V+ + I+ + + ++ + +G+ A Sbjct: 881 VVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKN 940 Query: 849 AIYFLYRLREILREEGGDIKDAIRKTLSTAGKASL--FVATAVAGGYGVL----SLSQGF 902 AI + ++++ +EG + +A A + L + T++A GVL S G Sbjct: 941 AILIVEFAKDLMEKEGKGVVEATLM----AVRMRLRPILMTSLAFILGVLPLAISNGAGS 996 Query: 903 HVHQWLAMFIVIAMLFSVFATLIMVPTMILILKPRF 938 + + ++ M+ + + VP ++++ F Sbjct: 997 GAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCF 1032 Score = 43.3 bits (102), Expect = 6e-06 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 31/225 (13%) Query: 389 IAILVIGLLHFEAFRSKQGLILPLVTALLAVAWGMGMMGLFKQPMDIFNSPTPILILAIA 448 + LV+ L + R+ + + LL + G + +F ++LAI Sbjct: 350 LVFLVM-YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG-----MVLAIG 403 Query: 449 AG--HAVQLLKRYYEDFDRLTAQGMEPKAANSEAVVQSMVRVGPVMILAGGIAAAGFFSL 506 A+ +++ + + PK EA +SM ++ ++ + +A F + Sbjct: 404 LLVDDAIVVVENVE---RVMMEDKLPPK----EATEKSMSQIQGALVGIAMVLSAVFIPM 456 Query: 507 LTFNIPT---IRSFGIFTGIGIISTLIIEMTFIPVLRSML--PPPSVTKVARKGLPIW-- 559 F T R F I + ++++ + P L + L P + + G W Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFN 516 Query: 560 ---DWIPKRIGDV---ILSVRPRMMLMTVIAVLG---VFLAIGTS 595 D + IL R +L+ + V G +FL + +S Sbjct: 517 TTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSS 561 Score = 36.7 bits (85), Expect = 6e-04 Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 23/186 (12%) Query: 362 MTISVGGNPVYLDKAEDYSKRINILFPIAILVIGLLHFEAFRSKQGLILPLVTALLAVAW 421 + G + + L I+ +V+ L + S + ++ L + Sbjct: 854 IGYDWTGMSYQERLSG---NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVG 910 Query: 422 GMGMMGLFKQPMDIFNSPTPILILAIAAGHAVQLLKRYYEDF--DRLTAQGMEPKAANSE 479 + LF Q D++ + + ++A +A+ ++ +F D + +G A Sbjct: 911 VLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV-----EFAKDLMEKEGKGVVEATLM 965 Query: 480 AVVQSMVRVGPVMILAGGIAAAGFFSLLTFNIPTIRSFGIFTGI------GIISTLIIEM 533 AV +R+ P+++ + A +L I G + G++S ++ + Sbjct: 966 AVR---MRLRPILM----TSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 534 TFIPVL 539 F+PV Sbjct: 1019 FFVPVF 1024
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 58.6 bits (142), Expect = 2e-11 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 9/127 (7%) Query: 16 TILVTGAAGFIGSRLIVELLREGHQVIAALRNAATKKDKLLGFIATQGLVDPSISFVEYD 75 LVTGAAGFIG + LL GHQV+ + N D L + L P F + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVV-GIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 76 LSRDFKLDSLLADAKAKIHVIYHLAA----SFNWGISKAEAERTNIKSGLALIEWAATLK 131 L+ + L A ++ ++ A A+ +N+ L ++E Sbjct: 61 LADREGMTDLFAS--GHFERVFISPHRLAVRYSLENPHAYAD-SNLTGFLNILE-GCRHN 116 Query: 132 QLERFIW 138 +++ ++ Sbjct: 117 KIQHLLY 123
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 83.8 bits (207), Expect = 4e-21 Identities = 51/224 (22%), Positives = 82/224 (36%), Gaps = 21/224 (9%) Query: 2 VSTHPIYLIAKEITQGVEEPQLLLK-GQTGHDVQLTPAHRKAINDASLVIWLGKAHE--- 57 + I I K I + ++ GQ H+ + P K ++A L+ + G E Sbjct: 37 ATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGG 96 Query: 58 -APLNKLLGN-----NKKAIALLDSGIVSVLPLRSTRGVALPNTVDTHVWLEPNNAVRIG 111 A KL+ N NK A+ S V V+ L G D H WL N + Sbjct: 97 NAWFTKLVENAKKTENKDYFAV--SDGVDVIYLE---GQNEKGKEDPHAWLNLENGIIFA 151 Query: 112 FFIAALRSQQHPENKAKYWNNANIFARKMFQAAQVYDST-----SNGKPYWSYHDAYQYL 166 IA S + P NK Y N + K+ + + + K + A++Y Sbjct: 152 KNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYF 211 Query: 167 ERSLNLKFAGALTDDPHVAPTAAQIKYLNDNRPKNQM-CLLAES 209 ++ + A + T QIK L + + ++ L ES Sbjct: 212 SKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVES 255
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.0 bits (59), Expect = 0.042 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 3/98 (3%) Query: 35 ERQRKIADGLNAAEKAKAELADAQSQVKQELDAAKAQAAQLIEQANRRAAQLIEESRTQA 94 + K + EKAK E Q K ++ Q + + A+ E+ Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKV---TSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 95 AAEGERIRQQAKEAVDQEINSAREELRQQVAALAVTGA 132 + + + +Q + Q V Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 32.8 bits (74), Expect = 0.001 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%) Query: 30 LKGRDDQRLQKILQLAEPFGISVQK-ASRDSLEKLAGL-PFHQGVVAAVRPHPVLNEQDL 87 L+ + ++IL+L ISV A D L + L P +V +R +L +DL Sbjct: 86 LEDEALPKAKQILKL-----ISVHGGALEDFLRQARSLFPDPSDLVLVLRE--LLRRKDL 138 Query: 88 DQILSETPDALLLALDQVTDPHNLGACIRTA 118 ++I+ + ++LL +++ TDP L A I A Sbjct: 139 EEIVRKKLESLLKHVEEQTDPKTLKAGINCA 169
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 314 bits (806), Expect = e-110 Identities = 143/286 (50%), Positives = 186/286 (65%), Gaps = 2/286 (0%) Query: 1 MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEHPII 60 M ++ + V L SL IGSFLNVVI+R P M+E++WQ E + NP+ + Sbjct: 1 MALLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGV 60 Query: 61 DHEKLTLSKPASSCPQCHQPIRWYQNIPVISWLVLKGKCGHCEHAISMRYPAIELLTMAC 120 D L P S CP C+ PI +NIP++SWL L+G+C C+ IS RYP +ELLT Sbjct: 61 DEPPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALL 120 Query: 121 SLVVIMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDRFTLPLAALGLGINTFSIYTT 180 S+ V M P L L+LTWVL+ALTFID D LLPD+ TLPL GL N + + Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVS 180 Query: 181 PTSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL 240 A+ G + G+L LW +Y+ FK++TGKEGMGYGDFKLLAALGAW+G LP+++LLSSL Sbjct: 181 LGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL 240 Query: 241 LGAIIGIILLKLRNDN--QPFAFGPYIAIAGWVAFLWGDQIMKIYL 284 +GA +GI L+ LRN + +P FGPY+AIAGW+A LWGD I + YL Sbjct: 241 VGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 403 bits (1037), Expect = e-141 Identities = 120/409 (29%), Positives = 221/409 (54%), Gaps = 12/409 (2%) Query: 9 MPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEG-------L 61 M + Y+ +D +G K +G A + A+ LR++G+ ++ E R + + Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 62 FKKKVSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTF 121 K ++ST D+ + TRQLAT++ A +PL + + VA+ E P + +++ ++ +V G + Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 122 ASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKIKKAMKYPATVI 181 A A++ +P F++L+C++V +GE SG L+ +L+R+A Y E+ + ++ +I++AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 182 VVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEY--WFIMIIVIGAII 239 VVA+ V IL+ VVP + F LP T++++ MS ++ + W ++ ++ G + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 240 AAFMEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALEST 299 M R +K R + L LP+ G + ARY+RTL+ A+ VPL+ A+ + Sbjct: 241 FRVM---LRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRIS 297 Query: 300 AGATNNVIYEQAVMKIREDVATGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKV 359 +N + + V G L A+ + FP M M+A GE SG LDSML++ Sbjct: 298 GDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERA 357 Query: 360 ATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLPIFQMGSVV 408 A + E + + + EPL++ + +V +V+A+ PI Q+ +++ Sbjct: 358 ADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 97.7 bits (243), Expect = 5e-30 Identities = 44/98 (44%), Positives = 66/98 (67%) Query: 1 MHSFVLIVHIILAVLMIGLILVQHGKGADAGASFGGGGAATVFGASGSANFLTRLTAVLT 60 M+ +L+V +I+A+ ++GLI++Q GKGAD GASFG G +AT+FG+SGS NF+TR+TA+L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 61 ALFFVTSLTLAVFAKKQTTEAYSLKTVQTTAPIQTTSP 98 LFF+ SL L +T + + + A + T P Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQP 98
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.028 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 36/131 (27%) Query: 111 KSNILLIGPTGSGKTLLAQTLARL---LDVPFAMADATTLTEA-------GYVG---EDV 157 +++ G +G+GK L+A+ L + PF + + G+ Sbjct: 160 DLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA 219 Query: 158 ENIVQKLLQKADYDVEKAQKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGT 217 + ++A+ G +++DEI + Q LL++++ Sbjct: 220 QTRSTGRFEQAE-------GGTLFLDEIGDMP--------------MDAQTRLLRVLQQG 258 Query: 218 VASIPPQGGRK 228 GGR Sbjct: 259 --EYTTVGGRT 267
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 427 bits (1100), Expect = e-151 Identities = 175/398 (43%), Positives = 251/398 (63%), Gaps = 17/398 (4%) Query: 5 VLVINCGSSSIKYALV-SERREDRIYGLAENLGAADARIKGVTVGGEPLELSIPYADHAK 63 +LVINCGSSS+KY L+ S+ GLAE +G D+ + GE +++ DH Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLT-HNANGEKIKIKKDMKDHKD 61 Query: 64 ALETLLARLANYKPQ---------AIGHRVVHGGSL-TKAELLTPEIIERIRAATPLAPL 113 A++ +L L N A+GHRVVHGG T + L+T ++++ I LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 114 HNPAHLIGIDATVRLFPELPQVAVFDTAFHQTMPPHAYRYAIPKFLYTEHNVRRYGFHGT 173 HNPA++ GI A ++ P++P VAVFDTAFHQTMP +AY Y IP YT++ +R+YGFHGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 174 SHAYVSDRASELAGNLKKG-GWLTAHLGNGSSTCAVWNGQSVDTSMGLTPLEGVVMGTRS 232 SH YVS RA+E+ + +T HLGNGSS AV NG+S+DTSMG TPLEG+ MGTRS Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 233 GDVDPSLHSFLAKNLGWDLAKIDKVLNNESGLLGLSQLSNDMRTVIEAA-EIGNEDACLA 291 G +DPS+ S+L + ++ +LN +SG+ G+S +S+D R + +AA + G++ A LA Sbjct: 242 GSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLA 301 Query: 292 IEVFSYRLAKSLAALSCGLPTLDGLIFTGGIGENSAYIREKTLAYLPHFGLQLDKDQNNN 351 + VF+YR+ K++ + + + +D ++FT GIGEN IRE L L G +LDK++N Sbjct: 302 LNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKNKV 361 Query: 352 LKRGTEGRID-NGTGPQIWVIPTDEEGRIAKETRQVVE 388 RG E I + + V+PT+EE IAK+T ++VE Sbjct: 362 --RGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 8e-07 Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 37/332 (11%) Query: 50 TLGLIGLAEAIPFIALSLWGGYFADRFNKQLIMKICLFFS------VPLPLILWLLFHLH 103 G++ A+ A + G +DRF ++ ++ + L + + LW+L+ Sbjct: 44 HYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLY--- 100 Query: 104 GLGHISVNFLSWGIYTVIFGLGTIRGFYNPSATSLKPFLIPRELYANGATWTTIGWQSGV 163 +G I + I G A + + + A + + + G+ Sbjct: 101 -IGRI---------------VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGM 144 Query: 164 IIGPMLGGFMLAYLGRETSLFSVAALLAICFILINLLHKRSFPKIETDNI---LESLGEG 220 + GP+LGG M + + F AA L L K E + + Sbjct: 145 VAGPVLGGLMGGFSPH--APFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLAS 202 Query: 221 FRFIWKTKIVLWAISLDLASVLFGGV-IALLPIFAEDILKVGPEGLGYLRAAPSIGALIT 279 FR+ +V +++ L G V AL IF ED +G AA G L + Sbjct: 203 FRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAA--FGILHS 260 Query: 280 MIALTRFPPTQHAWRNMLLAVAGF---GIFTILFAFSNNMWLSLFALAMTGACDSISVVV 336 + P + G G IL AF+ W++ + + A I + Sbjct: 261 LAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLL-ASGGIGMPA 319 Query: 337 RQTILQIFPPENMRGRVAAVNGMFVSSSNELG 368 Q +L E +G++ S ++ +G Sbjct: 320 LQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.013 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 85 NNTAEILAFYLLKEIQMQGIGRELFQKFYQCALNQGYTFIRLDVFNKN-PSRFFYEKMGA 143 N A I + K+ + +G+G L K + A + + L+ + N + FY K Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146 Query: 144 KIIG 147 I Sbjct: 147 IIGA 150
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 113 bits (285), Expect = 9e-37 Identities = 37/88 (42%), Positives = 56/88 (63%) Query: 5 TKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPGR 64 K D+ ++E T L ++++ V+ F +S L GE+V+L GFGNFE+R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 65 NPKTGEEIPISARRVVTFRAGQKFRQRV 92 NP+TGEEI I A +V F+AG+ + V Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 5e-11 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 22/200 (11%) Query: 42 SSKKLQVIHTTIQLITIHGFHNAGVDLIAKETKIPKATLYNYFHSKERLVETCISFQKSR 101 + ++ ++L + G + + IAK + + +Y +F K L +S Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 102 LKEEVLAIVYSHRYSKPSDKLKEIVR--LHVDVNSFYHLLFKAIFEIKQLYPSAYRMAVE 159 + E L + P L+EI+ L V L I K + + + Sbjct: 70 IGELELE-YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 160 YRKWLLRELFDLVFSL-----ETNVFNPD------ANMVLNLIDGLMLQ-VLSSNSLDER 207 ++ L E +D + E + D A ++ I GLM + + S D + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLK 188 Query: 208 D-------VVLEKFWGRETD 220 ++LE + T Sbjct: 189 KEARDYVAILLEMYLLCPTL 208
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.6 bits (69), Expect = 0.004 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 28/118 (23%) Query: 65 LQNQAKDLSTNTASTIEEELKKSAK---ELKESGNSDSSQSK------------------ 103 L++++ DL + I KK LK+ + D + Sbjct: 297 LKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHI 356 Query: 104 -------FKDKLMKIKEDAKKKANDNIDKIFAEAEKIGNAFPVAQNLIIATAQKISDL 154 +KI D K + N+ + + K+ + A ++ ++++ L Sbjct: 357 ELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYL 414
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 32.3 bits (73), Expect = 0.011 Identities = 69/299 (23%), Positives = 108/299 (36%), Gaps = 27/299 (9%) Query: 29 GSGDGLLNGIASGNGEHNYGIGNGIGDDASITAPITIPLNLSGNSITLIGN---SSSSSV 85 GSG G + + GI + +A I+ LNL+ NS+ L+GN V Sbjct: 208 GSGAGRKASSTVLTLQASEGITSRE--NAEISLYDGATLNLASNSVKLMGNVWMGRLQYV 265 Query: 86 NTSPTTTSNTVNDNDTTNNGNGSTSGGGAGNGSGDGLLNGAASGNGEQNFGIGNGIADDA 145 + +T+N + T N + G N + G++ + G + G+ Sbjct: 266 GAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGL---- 321 Query: 146 SITAPLSMPINLAGNSI-------TLIGDSSASSVNNSSTNTSNTVNDNDTTD---NGNG 195 +I AP N D SS NNS+T N N T+ Sbjct: 322 NIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVI 381 Query: 196 SGAGNGSGDGLLNGIASGNGEHNYGIGNGIADDASITAPISIPLNLSGNSITLIGNSSSS 255 G G + ++N I N + I G + T + L++ I L +S Sbjct: 382 DGPFAGGKNTVVN-INRINTNADGTIRVGGFKASLTTN--AAHLHIGKGGINLSNQASGR 438 Query: 256 SVNTSPTTTSNTVNDNDVTNNGNGDSGVSALGGSGN---GSGDGAGNGPASGNGEHNYG 311 S+ T + TV+ NN G G + G S N +G NG A+ N + + G Sbjct: 439 SLLVENLTGNITVDGPLRVNNQVG--GYALAGSSANFEFKAGTDTKNGTATFNNDISLG 495 Score = 30.8 bits (69), Expect = 0.034 Identities = 46/273 (16%), Positives = 92/273 (33%), Gaps = 13/273 (4%) Query: 290 GNGSGDGAGNGPASGNGEHNYGIGNGNGDDVDITAPITGVLNLSGNSFTLIGDSSSSSVN 349 N G GAG +S G + ++ +I+ LNL+ NS L+G+ + Sbjct: 204 NNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQ 263 Query: 350 TAPTTTS---NTVNDNDTIDNGNSGGTGSSSGNGSGDGLLNGAASGNGEHNYGIGNGNGD 406 + +T+N + N N + G++ + G + G Sbjct: 264 YVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAG--- 320 Query: 407 DVDLTAPITGVFNFSGNSFSLIGNSSSSSVNTAPTTTSNTVNDNDVTDNGNDGSAL---G 463 +++ AP G + N +++ + ++ +N+ N + + Sbjct: 321 -LNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQ 379 Query: 464 VGGSSGNGAGDGLLNGAASGNGEHNYGIGNGNGDDADFTFPLTGVLNFSGNSISGFGSSS 523 V G + ++N N + I G + T L+ I+ +S Sbjct: 380 VIDGPFAGGKNTVVN-INRINTNADGTIRVGGFKASLTTN--AAHLHIGKGGINLSNQAS 436 Query: 524 SDSVNIAPTTTTNTVNDNDTIDNANTGGIGDGS 556 S+ + T TV+ ++N G GS Sbjct: 437 GRSLLVENLTGNITVDGPLRVNNQVGGYALAGS 469 Score = 30.4 bits (68), Expect = 0.045 Identities = 65/319 (20%), Positives = 107/319 (33%), Gaps = 29/319 (9%) Query: 159 GNSITLIGDSSASSVNNSSTNTSNTVNDNDTTDNGNGSGAGNGSGDGLLNGIASGNGEHN 218 GNS T DS+ + + +++ +N GSGAG + +L AS Sbjct: 172 GNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASE----- 226 Query: 219 YGIGNGIADDASITAPISIPLNLSGNSITLIGN---SSSSSVNTSPTTTSNTVNDNDVTN 275 G ++A I+ LNL+ NS+ L+GN V + +T+N + VT Sbjct: 227 ---GITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTG 283 Query: 276 NGNGDSGVSALGGSGNGSGDGAGNGPASGNGEHNYGIGNGNGDDVDITAPITGVLNLSGN 335 N + G + A G + N H + ++I AP G N Sbjct: 284 EVNFNHLTV-------GDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPN 336 Query: 336 SFTLIGDSSSSSVNTAPTTTSNTVNDNDTIDNGNSGGTGSSSGNGSGDGLLNGAASG--- 392 + +++ N ++ N N I+ NS DG G + Sbjct: 337 D-KPSNTTQNNAKNDKQESSQNNSN-TQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVN 394 Query: 393 ----NGEHNYGIGNGNGDDVDLTAPITGVFNFSGNSFSLIGNSSSSSVNTAPTTTSNTVN 448 N + I G T + +L +S S+ T + TV+ Sbjct: 395 INRINTNADGTIRVGGFKASLTTN--AAHLHIGKGGINLSNQASGRSLLVENLTGNITVD 452 Query: 449 DNDVTDNGNDGSALGVGGS 467 +N G AL + Sbjct: 453 GPLRVNNQVGGYALAGSSA 471
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 6e-22 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%) Query: 8 PKILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGL 67 IL+ +DD + + + L R G +V + ++ R I + DLVV DV++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 68 TVCREVRPHY-HQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTD 126 + ++ P+L+++A+ M + E GA DY+ KP L+ I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 127 KTVEDEVAQRIEFDDLV 143 + + LV Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 1e-04 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 24/109 (22%) Query: 405 VVQNLVGNAVRYC------DNKVRITGGVHSDGMAFVCVEDDGAGIPEQDRQRVFEAFAR 458 +VQ LV N +++ K+ + G +G + VE+ G+ + ++ Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKG-TKDNGTVTLEVENTGSLALKNTKE-------- 309 Query: 459 LDDSRTRASGGYGLGLSIVSRIAYWFGGEIKVDESPTLGGARFIMTWPA 507 S G GL ++ R+ +G E ++ S G ++ P Sbjct: 310 --------STGTGL-QNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 41.7 bits (98), Expect = 1e-06 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 17/218 (7%) Query: 12 LQQIRRACEHAQRAPEAVQLLAVSKT----HPSESLREMYAAGQRAFGENYLQEALEKIE 67 LQ +++ ++A ++ +V K H E + F L+EA+ E Sbjct: 11 LQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWS-AIGATDGFALLNLEEAITLRE 69 Query: 68 ALKDLEIEWHFIGHVQRNKTKNLAEKFDWVHGVDRLIIAERLSNQRFQDQSDLNICLQVN 127 + + + + ++ V + L N R + + + + Sbjct: 70 R--GWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP----LDIYLK 123 Query: 128 IDGQDSKDGCAPDEVAELVAQISQLPKIRLRGLMV-IPAPDNTAAFADAKALFDEVREKH 186 ++ ++ G PD V + Q+ + + LM ++ + A A ++ E Sbjct: 124 VNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAAEGL 183 Query: 187 AHPQDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 224 S+ S+ A VR G L+GA Sbjct: 184 ECR-----RSLSNSAATLWHPEAHFDWVRPGIILYGAS 216
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 39.5 bits (92), Expect = 7e-05 Identities = 40/289 (13%), Positives = 94/289 (32%), Gaps = 36/289 (12%) Query: 254 NVLDKQQQWFERKAKLELEVQTKQQQFQNQQNQHQQLAGEREQLKRLEVFSEIRPQVFQQ 313 + + F ++ L+L + F R + +++ ++ + Sbjct: 175 DFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEV 234 Query: 314 TQNLQTLQQLEPQIQQAQIKFNDLVQIFETGQKQYQSAEQELKQTLDFEQQHQPALNQVR 373 ++L +IQ + +FN + L D+++ + ++ Sbjct: 235 CKDLF------KEIQSNKFEFN----CYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSK-- 282 Query: 374 QSIQERTFIADEYKKCKEKRNVLEQKLSPLQQQQNTVQQQIEQLQQNQAHLQQQLTQTGQ 433 + + + K+K + L+ K S LQ+ V I + + L L + Sbjct: 283 --------LLENFYYAKDKSDRLKSKSSDLQKI---VMNNINRCTKKDKILNNTLKKCED 331 Query: 434 YAVLDKG---LSAHLHQLGQFIQNYEVIEQQLGNPTLARQKLSEAKSELEQ--------- 481 + L+A+++ L + + + E+ N + L E K+ + Sbjct: 332 KDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYN 391 Query: 482 -LTTSVGTVEQIEVKLEQQRKDKEQKLAQITQLDLIQQKVKIYHELYAE 529 L S + ++ E++ L I D + +I EL Sbjct: 392 KLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIET 440
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 2e-07 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 36/159 (22%) Query: 4 NVLITGASGFIGTHLIKFLLQKNYNVIAV-------------TRQA-----------GKE 39 L+TGA+GFIG H+ K LL+ + V+ + R Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 40 SDHPALQWVQKFEDISTRQIDYVVNLAGANIGEKRWTESRKKQLIESRVNTTRKLYAWLK 99 +D + + ++ + V + + E+ +S + + + Sbjct: 62 ADREGMTDL-----FASGHFERVFISP-HRLAVRYSLENPHA-YADSNLTGFLNILEGCR 114 Query: 100 QSEIFPEVIVSGSAIGYYGIDNQEKWAEVCTEQSPPQPI 138 ++I + S S++ YG++ + ++ + S P+ Sbjct: 115 HNKIQHLLYASSSSV--YGLNRKMPFST---DDSVDHPV 148
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 109 bits (273), Expect = 2e-28 Identities = 67/411 (16%), Positives = 158/411 (38%), Gaps = 70/411 (17%) Query: 25 KRKKFLGFFALILLIAAILYAIWALFLNHSVSTDNAYVGAETAQITSMVSGQVAQVVVKD 84 +R + + +F + L+ A + ++ + + + +I + + V +++VK+ Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 85 TQTVHRGDVLVRIDDR--DAKIALAQAEAELAKAKRQYKQTAANS--------------- 127 ++V +GDVL+++ +A Q+ A+ ++ Q + S Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 128 --SSLNSQVVVRADE-----ITSAKAQVAQAQADYDRAALE------------------- 161 +++ + V+R ++ + Q Q + + D+ E Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 162 --LNRRAQLAASGAVSKEELTKSQSAVETAKAGLELAKAGLAQASSSRKAAESTFAANEA 219 L+ + L A++K + + ++ A L + K+ L Q S +A+ + Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 220 LIQGVSETST------PDVQVAQAHVEQAQLDLERTVIRAPVDGVVTRRNIQ-VGQRVAP 272 L + +E ++ + + + + + +VIRAPV V + + G V Sbjct: 295 LFK--NEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352 Query: 273 GTSMMMIVPLND-LYVDANFKESQLKKVRPGQIVTLTSDLYGDDVEYHGKVMGFSGGTGS 331 ++M+IVP +D L V A + + + GQ + + + +G ++G Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF--PYTRYGYLVG------- 403 Query: 332 AFALIPAQNATGNWIKVVQRLPVRIALDPKELAEH----PLRVGLSMEAKV 378 I + +V V I+++ L+ PL G+++ A++ Sbjct: 404 KVKNINLDAIEDQRLGLVFN--VIISIEENCLSTGNKNIPLSSGMAVTAEI 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 110 bits (276), Expect = 3e-28 Identities = 90/397 (22%), Positives = 166/397 (41%), Gaps = 20/397 (5%) Query: 27 FMVVLDTTIANVSVPHITGNLAVSSTQGTWVVTSYAVAEAICVPLTGWLAGRFGTVRVFI 86 F VL+ + NVS+P I + WV T++ + +I + G L+ + G R+ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 87 FGLIGFTIFSFLCGLANS-LGMLVFFRIGQGLCGGPLMPLSQTLLMRIFPKEKHAQAMGL 145 FG+I S + + +S +L+ R QG L ++ R PKE +A GL Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 146 WAMTTVVGPILGPILGGLISDNLSWHWIFFINIP-VGIICVLAAIRLLKPAETETISLRI 204 +G +GP +GG+I+ + HW + + IP + II V ++LLK I Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 205 DTVGLGLLILWIGALQLMLDLGHERDWFNSTSIVVLALTAVIGFVVFLIWELTDKHPVVD 264 G++++ +G + ML F ++ + + +V+ F++F+ P VD Sbjct: 202 ----KGIILMSVGIVFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 265 VKVFRHRGFAISVLALSLGFGAFFGSIVLIPQWLQM--NLSYTATWAGYLTATMGFGSLT 322 + ++ F I VL + FG G + ++P ++ LS + + + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 323 MSPIVAKLSTKHDPRALASFGLILLGAVTLMRAFWTTDADFMALAWPQILQGFAVPFFFI 382 I L + P + + G+ L L +F + + + + F Sbjct: 310 -GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF-LLETTSWFMTIIIVFVLGGLSFTKT 367 Query: 383 PLSNIALGSVLQQEIASAAGLMNFLRTMAGAIGASIA 419 +S I S+ QQE + L+NF ++ G +I Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 30.1 bits (68), Expect = 0.008 Identities = 16/103 (15%), Positives = 44/103 (42%), Gaps = 11/103 (10%) Query: 154 VQPVEENELQELRKLSLQQRDKEKLRDFKFANDQESYEQANQIATEKLAQFKHASQQSLL 213 + + L R ++ D+E ++ F+ A + Y + + + + S Sbjct: 88 LSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPS----- 142 Query: 214 WRSLFISFLISFIVAFLLKNF-VGLLVSFIVFLILGLVISKVI 255 + L ++ ++ + F +G + ++ F+++ LV+S V+ Sbjct: 143 ----IFALLPAYALSEIKSAFKIGFYL-YLPFVVVDLVVSSVL 180
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.4 bits (123), Expect = 4e-09 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 1/174 (0%) Query: 41 IATFFDAYTVLAIAFALPQLITEWHLTPAYVGAIIAAGYVGQLVGAIFFGSLAEKVGRLK 100 I +FF + + +LP + +++ PA + A + +G +G L++++G + Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 101 VLSFTILLFVAMDISCLFAWSGMSLLIF-RFLQGIGTGGEVPVASAYINEFIGAEKRGKF 159 +L F I++ + S SLLI RF+QG G + + +I E RGK Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 160 FLLYEVLFPMGLMFAGMAAFFLMPIYGWKVMFIVGLVPSLLVIPLRFFLPESPR 213 F L + MG + W + ++ ++ + V L L + R Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 1e-05 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 241 VELRIRINEKGQPIDIQLRQSSGIASLDERVMQATRKSRFKPHKINGRAVTIVVDFPV 298 V+++ + G+ ++Q+ + + V A R+ R++P K G + + + F + Sbjct: 180 VKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGK-PGSGIVVNILFKI 236
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 111 bits (279), Expect = 9e-32 Identities = 62/258 (24%), Positives = 122/258 (47%), Gaps = 13/258 (5%) Query: 3 NVALLQGKKVLVTGAARGLGRDFAQAIAEAGAEVVMADILSDLVQQEAQALQKQGLNVHA 62 N ++GK +TGAA+G+G A+ +A GA + D + +++ +L+ + + A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 63 VTVDLADATSIENAVAKSVELLKGLDGLVNCAALATNVGGKNMIDYDPELWDRVMNINVK 122 D+ D+ +I+ A+ + +D LVN A + ++ D E W+ ++N Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSD---EEWEATFSVNST 118 Query: 123 GTWLISKACVPHLKQSAAGKIINVASDTALWGAPNLMAYVASKGAIFAMTRSMARELGQF 182 G + S++ ++ +G I+ V S+ A ++ AY +SK A T+ + EL ++ Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 183 NICVNTLSPGL--TLVEATEYVPQERHDLYVNGRAIQ--------RQQLPQDLNGTALYL 232 NI N +SPG T ++ + + + + + G + P D+ L+L Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 233 LSDLSSFVTGQNIPVNGG 250 +S + +T N+ V+GG Sbjct: 239 VSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 40.6 bits (95), Expect = 7e-06 Identities = 69/363 (19%), Positives = 127/363 (34%), Gaps = 26/363 (7%) Query: 52 AKLGWLMTSFLLAYGFSSVFLSFLGDIFNPKKMLFWSVTSWGLLMFCMGFTTSYSGMLIL 111 A G L+ + L + L L D F + +L S+ + M + I Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 112 RVLLGLAEGPLFALAYTIVKQTYTDRQQARASTMFLLGTPIGA-FLGFPITANVLAHHDW 170 R++ G+ I T RA + G + P+ ++ Sbjct: 103 RIVAGITGATGAVAGAYIADIT---DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP 159 Query: 171 HTTFFVMAGLTLIAIFSIVFGLRNLQL--KKTVEIEGESKRTNFKGHIANTKILLSNRAF 228 H FF A L + + F L ++ + E + +F+ T + F Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVF 219 Query: 229 WLVCLFNIALMTYLWGLNS-----WVPSYLMQDKGFNLKEFGMYSSFPFIAMLIGEIIGA 283 +++ L LW + W + G +L FG+ S AM+ G Sbjct: 220 FIMQLVGQVPAA-LWVIFGEDRFHWDAT----TIGISLAAFGILHSL-AQAMITG----- 268 Query: 284 FLSDKLGRRAIQVFSGLLLAGIFMYVMVIMTEPLLIIAAMSLSAMAWGFGVAAVFALLAK 343 ++ +LG R + G++ G ++ T + M L A + G G+ A+ A+L++ Sbjct: 269 PVAARLGERRA-LMLGMIADGTGYILLAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSR 326 Query: 344 VTTSNVGATAGGIFNGLGNFASAIAPVLIGYIVMQTHSFNLGITFLAAVAVIGSFFLVPL 403 G L + S + P+L I + + G ++A A+ +P Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYL--LCLPA 384 Query: 404 LKR 406 L+R Sbjct: 385 LRR 387
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 102 bits (256), Expect = 3e-28 Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 12/259 (4%) Query: 5 VEGKVAVVTGGSSGIGLAAVEILVAEGAKVAW--CGRDEERLNASKLYILEKYPHANIFT 62 +EGK+A +TG + GIG A L ++GA +A ++ S L ++ A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 KACNVLKKEEVQQFAKDVKLNLGNVDMLINNAGQGRVSNFENTQDEDWMKEIELKYFSVL 122 + E + +++ G +D+L+N AG R + DE+W + V Sbjct: 66 VRDSAAIDEITARIEREM----GPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 123 HPVRAFLEDLKHSANASITNVNSLLALQPEPHMIATSSARAALLNLTHSLAHEFTQYGVR 182 + R+ + + + SI V S A P M A +S++AA + T L E +Y +R Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 183 VNSILLGMVESA-QWKRRYETRSDLNQSWEEWTGNIAKNR-GIPMQRLGRPEEPARALVF 240 N + G E+ QW +D N + + G++ + GIP+++L +P + A A++F Sbjct: 182 CNIVSPGSTETDMQW----SLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 241 LASPLASYTTGAALDVSGG 259 L S A + T L V GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 5e-07 Identities = 54/361 (14%), Positives = 122/361 (33%), Gaps = 47/361 (13%) Query: 60 TMGYIFSAFAWAYVIGQIPGGWLLDKFGARRVYFWSLFLWSLFTVLIGFTNILGDTATII 119 G + + +A G L D+FG R V SL ++ ++ L Sbjct: 44 HYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL------- 96 Query: 120 TSLFVLRFLVGLSESPAFPGNSKIAAAWFPTKERGTAAAIFNSSSYFSTVLFAPLMGWLV 179 L++ R + G++ + A ER F S+ + ++ P++G L+ Sbjct: 97 WVLYIGRIVAGITGAT-GAVAGAYIADITDGDER-ARHFGFMSACFGFGMVAGPVLGGLM 154 Query: 180 ATVHWQSIFWVMGGLGILLSFIWLKVIYSPTDHPTVNPEEVKYIASEGALLDMGENSQNT 239 + F+ L L+F+ + + P + + Sbjct: 155 GGFSPHAPFFAAAALNG-LNFLTGCFLLPESHKGERRPLRREAL---------------N 198 Query: 240 KKEKITWSKVKQLLSSRMMLG---IFIGQYCVNTLTYFFLTWFPVYLVKERHLSILEAGF 296 W++ ++++ M + +GQ + ++ H G Sbjct: 199 PLASFRWARGMTVVAALMAVFFIMQLVGQ--------VPAALWVIFGEDRFHWDATTIGI 250 Query: 297 AAVAPALCGFVGGILGGLISDKLIRMNYGLSFSRKLPIVVGFLVSTS--IIMCNYVDSQA 354 + A G + + +I+ + + +++G + + I++ Sbjct: 251 SL---AAFGILHSLAQAMITGPVAAR-----LGERRALMLGMIADGTGYILLAFATRGWM 302 Query: 355 AIVFFMSLSFFGKGVGSLGWAVMSDVAPKEMVGLSGGMMNAFGNTAGIVTPIVIGYVLAS 414 A + L+ G G+ +L A++S +E G G + A + IV P++ + A+ Sbjct: 303 AFPIMVLLASGGIGMPALQ-AMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Query: 415 T 415 + Sbjct: 362 S 362
>PF07520#Virulence protein SrfB Length = 1041 Score = 27.6 bits (61), Expect = 0.018 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 42 NPRGTVE-GGMICAMLDDVMGLFAYLANDRKPATTI 76 +P+ TV GGM+ A+ ++ + F + +T Sbjct: 858 DPKSTVAVGGMLIALSENRIPNFKVTTGAFQMKSTA 893
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.007 Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 5 IVGPSGAGKTTITKKLAEELKISAHAFD 32 + G G GK+T+ L S FD Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFD 628
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.6 bits (82), Expect = 3e-04 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 3/177 (1%) Query: 25 VILLFAIASGASVANVYYAQPLLDILARDFSISHAAIGGVVTATQIGCALALVFLVPLGD 84 +++ I S SV N L +A DF+ A+ V TA + ++ L D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 85 LVNRRRLMTIQLLALVSALLVVAFAHSVVVLLAGMLAVGLLGTAMTQGLIAYA-ASAALP 143 + +RL+ ++ ++ HS LL + G A L+ A Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 144 HEQGHVVGTAQSGVFIGLLLARVFSGGISDVAGWRGVYFCAAIIMLMIALPLWRRLP 200 +G G S V +G + G I+ W Y ++ +I +P +L Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLL 189
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 31.0 bits (70), Expect = 0.004 Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 182 IWDVVEDAELKAKVTELAERLAKQPTFGLSLIKKAIHQSSNNTFDEQVLLERDLQRIAGR 241 V + E K V+EL L+ P LS +K + S ++ +L + GR Sbjct: 90 YLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGR 149 Query: 242 SE 243 E Sbjct: 150 PE 151
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 1e-09 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 11/163 (6%) Query: 7 PTRAIQVINKSINLFHHFGFHTVGVDRIVKECGIPKATFYNYFHSKERFIEICLIVQKER 66 TR +++ ++ LF G + + I K G+ + Y +F K + + Sbjct: 11 ETRQ-HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 LKEKVVSIAE---YTSHASARDKLKAIYLLHTNLEGLYFLLFKAIFEIKLTYSKAYQVAI 123 + E + + R+ L L T E LL + IF + V Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIH-VLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 124 KYRTW------LINEIYSRLIKLKSDATFQDAKLFLYMIEGAI 160 R I + I+ K + ++ G I Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 8e-13 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 17/194 (8%) Query: 7 SSKKLQVIRTTIQLITTHGFHNVGVDLIAKENKITKGTLYNYFHSKECLIEMCISFQKSL 66 + ++ ++L + G + + IAK +T+G +Y +F K L +S Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 LKEEVLSIIYSNRYRTPTDKLKEIIVLHTKL---NSLYNLLLKAIFEIKLLHP------Q 117 + E+ + P L+EI++ + LL++ IF Q Sbjct: 70 IG-ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 118 AYRMV-VEYRKWLRHEIFDLIFKGEIHE---PKFDANMVVNLIDGLLLQ-VLSLNSLDER 172 A R + +E + + I + + A ++ I GL+ + + S D + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLK 188 Query: 173 DTVVERFFKDTYLR 186 R + L Sbjct: 189 KE--ARDYVAILLE 200
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 29.9 bits (67), Expect = 0.013 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 191 AIHYFSGNNRHAGEMRFVRNGEKKTVQMN 219 +HYFS ++ G+ ++R G K Q+N Sbjct: 40 GLHYFSDDSSKDGDQTYMRVGFKGETQIN 68
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.0 bits (65), Expect = 0.027 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 69 FRLASVSKVIVSTAALVLIAQNKLNLDEFIHH---QLPYFQPKLENGKFVP--ITLRQLL 123 F + S KV++ A L + L+ IH+ L + P E K + +T+ +L Sbjct: 62 FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSE--KHLADGMTVGELC 119 Query: 124 SHT 126 + Sbjct: 120 AAA 122
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 45.6 bits (108), Expect = 2e-07 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 2/180 (1%) Query: 1 MNSSYSNDRLPIVPLLI-LAMGAFVTILTEALPAGLLPQLALGLNISEPLAGQTITIYAI 59 MN+SYS L +LI L + +F ++L E + LP +A N T + + Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 60 GSLLTAIPLTNATQSVRRKPLLLIALAGFALTNLITTLSTSYF-LTMVARFLAGVSAGLL 118 + + + K LLL + ++I + S+F L ++ARF+ G A Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAF 120 Query: 119 WALLAGYATRMAPEHLKGRAIAIAMLGTPLALSLGVPAGTYLGQLFGWRMAFGVMSIFAI 178 AL+ R P+ +G+A + + +G G + W + I I Sbjct: 121 PALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITII 180
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.1 bits (114), Expect = 2e-09 Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 17/183 (9%) Query: 12 SVLHTSRFLFNKYGFHNVGVDRIIDSAKVPKATFYNYFHSKERLIEMSLTFQKDGLKQEV 71 +L + LF++ G + + I +A V + Y +F K L + + E+ Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI-GEL 73 Query: 72 ISIIHVQKELTLVEKLRKIY--FLHADLEG-LYHLPFKAIFEIAKTHPKAYQTVVEYRNW 128 + + LR+I L + + L + IF + + V + + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM-AVVQQAQRN 132 Query: 129 FINEIYKLLLTTNANALKQD-----------AHMFLFVIDGAMVQ-LLDPTKPDERERLL 176 E Y + T + ++ A + I G M L P D ++ Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEAR 192 Query: 177 EYF 179 +Y Sbjct: 193 DYV 195
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.008 Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 509 APINGVISAWKVENGEQVTEGQVVAIMEAMKMEVQVLAHRSGVIQIEAE 557 N ++ V+ GE V +G V+ + A+ E L +S ++Q E Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 25.5 bits (56), Expect = 0.021 Identities = 4/29 (13%), Positives = 16/29 (55%) Query: 9 LKILKWLIVLFLMFVLLLGVIEFIANKFF 37 +IL+ L+V+ + +++ + ++ + Sbjct: 181 GQILRQLMVICTVGFVVISIADYAFEYYQ 209
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 4e-09 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 15/186 (8%) Query: 12 RVLHVAKDLFNQDGFNKVGVDRIIAEAKIPKATFYNDFHSKARLIEMCLTFQKDALKVKV 71 +L VA LF+Q G + + I A + + Y F K+ L + + + Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE-L 73 Query: 72 FSILKSYREEMVLDKLKQIYL--LHADLNGFYHLPFKAIFEIEKLYPKAYSVVIEYRTWL 129 ++ L L++I + L + + I + + +VV + + L Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 130 INEIYKLL-----LTVKTTASMKD------AHMFLFVIDGAMVQ-LLSKNSVDERDKLLN 177 E Y + ++ D A + I G M L + S D + + + Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARD 193 Query: 178 YFLIML 183 Y I+L Sbjct: 194 YVAILL 199
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 29.4 bits (66), Expect = 0.020 Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 1 MIKKAFLSVSILSAVVLGGCDNTAKVPEAKQDAQAATNTKPI 42 M K L V LSA++L C + K + Q + I Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSII 42
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 101 bits (253), Expect = 2e-25 Identities = 90/393 (22%), Positives = 176/393 (44%), Gaps = 15/393 (3%) Query: 16 FIDCINIFMSAIALPNIASSFSVSQSMVAWVTNAYILGLILIMPMSLWLATKLGNQKLLC 75 F +N + ++LP+IA+ F+ + WV A++L + + L+ +LG ++LL Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 76 YSMLLFSISICFIGFSESIYS-LIFWRFIQGIAGGLLIPVGQALVYALFPNQERQRISTM 134 + +++ S +S LI RFIQG + +V P + R + + Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 135 IMAIALIAPAFSPAIGGVIIDSLNWRWVFLSNLPFSLLASFLAWLWVKKTENVSSERPDI 194 I +I + PAIGG+I ++W +L +P + + + + K E DI Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 195 KGLVIFNISLLCLLLSFSFYSDYHNLTLAVSSFLISVGMLIFYIQHSKKISHPILNLQLL 254 KG+++ ++ ++ +L + YS L ++V SFLI +++H +K++ P ++ L Sbjct: 202 KGIILMSVGIVFFMLFTTSYSISF-LIVSVLSFLI-------FVKHIRKVTDPFVDPGLG 253 Query: 255 KNKNLRNAFIVYYAVPGIFTGVNLLNIFNLQVNLGFNAKQTGS-FMLLYAAGALVAMISG 313 KN + + G G + + ++ + + GS + ++ G Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 314 GLLYQKIGKKYLLIIGVTLHSLGIFLLFFISNTSPLSFLVIAYLLMGMGGGLSANIAQIS 373 G+L + G Y+L IGVT S+ F+ T+ + +++ + GGLS IS Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTS---WFMTIIIVFVLGGLSFTKTVIS 370 Query: 374 SLIDFSGQDLLQGSVLWNINRQVSFSVGTVVLI 406 +++ S + G+ + +N S GT + I Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAI 403
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 28.9 bits (64), Expect = 0.023 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%) Query: 49 LTSSPILLLAGKAKDGITFIGEINDYLLVGQFTTVRFKENDQLIAVINEKPVE 101 L + + L G+ KD +FI L +F +RF N + I+ I K + Sbjct: 93 LDNENVRLFNGRDKDSTSFI-------LGDEFAVLRFYRNGESISYIAYKEAQ 138
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 9e-07 Identities = 74/405 (18%), Positives = 134/405 (33%), Gaps = 43/405 (10%) Query: 27 IFAFLTLLCDGADLGFLALSLTSLKTEFHLTGVQAGTLGSL----TLLGSAIGGLIGGWA 82 I T+ D +G + L L + + G L L+ A ++G + Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 83 CDRFGRVRIIVFFIAYSSVLTCALGFTDSYMQFAIVRVFGSMGLGALYIACNILMSEMVP 142 DRFGR +++ +A ++V + I R+ + GA ++++ Sbjct: 68 -DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITD 125 Query: 143 TKHRTTVL----ATLMTGYTLGSLLATLLAG--HIIPEHGWRFLYWIAITPVVLSILMHF 196 R A G G +L L+ G P + A + + F Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAP------FFAAAALNGLNFLTGCF 179 Query: 197 CVPEPASWKKSRELKALAATTVDPTQKVKRQNPYLEILKDKKHGTMFVLWII----STGA 252 +PE E + L ++P R + ++ M V +I+ A Sbjct: 180 LLPES----HKGERRPLRREALNPLASF-RWARGMTVVA----ALMAVFFIMQLVGQVPA 230 Query: 253 LQFGYYGVSNWLPAYLESDLGIKFKEMAMYMVGTFLIMMFAKVIAGIVADKLGRRAVFAF 312 + +G + + + +GI L + +I G VA +LG R Sbjct: 231 ALWVIFGEDRF--HWDATTIGI------SLAAFGILHSLAQAMITGPVAARLGERRALML 282 Query: 313 GTIGTAL-FIPVIVYLNTPTNILWMMLFFGFLYGIPYAINATYMTESFPTSIRGSAVGGA 371 G I +I + M+L G+P A+ A ++ +G G Sbjct: 283 GMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMP-ALQA-MLSRQVDEERQGQLQGSL 340 Query: 372 YNIGKVLSIFSPLTIGYL-SQSGSIGLGLLVMAAAYFICGVIPLL 415 + + SI PL + + S + G +A A +P L Sbjct: 341 AALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.7 bits (111), Expect = 1e-07 Identities = 67/397 (16%), Positives = 135/397 (34%), Gaps = 30/397 (7%) Query: 27 IFSFLTLLCDGADVGILAFTLTSIKAEFGLTTIQAGALGS----WSIFGMAIGGLIGGWA 82 I T+ D +G++ L + + + G +++ A ++G Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL- 66 Query: 83 SDRFGRVRIIVISTAAFAILSCMTGFAQSYGQLAILRIITCMGLGCLYIGCNTLMSEMVP 142 SDRFGR ++++S A A+ + A L I RI+ + G ++++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITD 125 Query: 143 TKYRTTVLATLMTGYTLGSLTITG-LSGWIIPEFGWRM-LYFITIIPIVLAVLMFFFVPE 200 R G + G + G ++ F + + + + F +PE Sbjct: 126 GDERARHFG--FMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 201 PESWRKARDLKLANPAVGTAKKAENPYIALFKDKKHGKMLMLWSFSSGFLM--FGYLGVS 258 + ++A NP + G ++ + F+M G + + Sbjct: 184 SHKGERR----------PLRREALNPLASFR--WARGMTVVAALMAVFFIMQLVGQVPAA 231 Query: 259 NWLPAYLESELGIKFKEMAIYMIGTFLTMMFAK-VLAGFVADRIGRRVVFAFGTIGTAL- 316 W+ + E + I + + A+ ++ G VA R+G R G I Sbjct: 232 LWV-IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG 290 Query: 317 FIPVVVYMHTPENIGWLMLVFGFLYGIPYAINATYLTESFPTSIRGTAVGGAFNIGRIGA 376 +I + ++L+ G+P A+ A L+ +G G + + + Sbjct: 291 YILLAFATRGWMAFPIMVLLASGGIGMP-ALQA-MLSRQVDEERQGQLQGSLAALTSLTS 348 Query: 377 IFAPLTIGYL-AMHGSIGAGLLLMGIAYFVCGLIPTL 412 I PL + A + G + A +P L Sbjct: 349 IVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 31.4 bits (71), Expect = 0.007 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 281 KVSWGAGGGLKYQLTPQQSVQANYQYI--VGDQKFMPYTTQSGLAN 324 VS GG++Y +TP+ + + YQ+ +GD + +G+ + Sbjct: 139 GVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLS 184
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.5 bits (66), Expect = 0.023 Identities = 53/367 (14%), Positives = 112/367 (30%), Gaps = 49/367 (13%) Query: 42 IAKALQANAEQVALTIVIGQLSYAVGLFLLVPLGDFFEKRSYICLLMCCTGLAQVGLSFS 101 IA L++++G + L D + + + V Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 102 QT-LPVLYGFTFLATFFSIATQVLVPFA-AGLAGPKKSPQVVGILMSGLFLGILLARSIA 159 + +L F+ + A LV A + + G++ S + +G + +I Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIG 159 Query: 160 GLLSTVWSWHAVYLISGIVILVFAWIMWSKLPVARKSHQLNILQI--------------- 204 G+++ W + LI I I+ ++M R +I I Sbjct: 160 GMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTT 219 Query: 205 -YSSLF-------------------------SLAAHQPHLLRRGFAGGIGFGILALIFTT 238 YS F L + P + GGI FG +A + Sbjct: 220 SYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIP-FMIGVLCGGIIFGTVAGFVSM 278 Query: 239 MTFLLANAPYHFNDFQIG--LFGIVGLAGVFATPWAGKKIAAGLENKVALVSMVLLITAW 296 + +++ + + + +IG + ++ + G + V + + L ++ Sbjct: 279 VPYMMKDV-HQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSF 337 Query: 297 IPL-FFAQQSLVAYAVGVIMAYFGLSAFHVLNQNLVYRISAQARSRIN-SIYMTLYFGGA 354 + F + + + ++ GLS + +V Q + S+ F Sbjct: 338 LTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSE 397 Query: 355 ALGSFIA 361 G I Sbjct: 398 GTGIAIV 404
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (268), Expect = 9e-30 Identities = 79/255 (30%), Positives = 120/255 (47%), Gaps = 15/255 (5%) Query: 44 LQGKVAVISGGDSGIGRSVAVLFAREGADIAILYLEEEQDAQITKELIEKEGQRCLLLKG 103 ++GK+A I+G GIG +VA A +GA IA + E+ ++ L + E + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL-KAEARHAEAFPA 64 Query: 104 DISDPDIAKQEIDEVLKHFGKINILVNNAGVQYQQKDIVDISNEQLEKTFKTNILAMFYL 163 D+ D + + + G I+ILVN AGV + I +S+E+ E TF N +F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 164 TKEAIPYM--QEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQKKGIR 221 ++ YM + SI+ S + + YAS+K A FT+ L L + IR Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY--NIR 181 Query: 222 VNGVAPGPIWT----PLIPSSFDAETV-----EKFGKDTPMGRMGQPSEVAPAYLFLASD 272 N V+PG T L AE V E F P+ ++ +PS++A A LFL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 273 DASYITGQVIHVNGG 287 A +IT + V+GG Sbjct: 242 QAGHITMHNLCVDGG 256
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 30.9 bits (69), Expect = 0.002 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 13/114 (11%) Query: 28 INLSVSSVHRRIKHLIE---ANVMGQLKREINFSKLGFTLHILLQVSLSKHDTETFDKFL 84 +NLS+S +HR++ L++ + G+L+ + +K T L S ++ + F + Sbjct: 1 MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANK-ETTFQGLTIASGARESEKVFAQ-- 57 Query: 85 SEIEAIPEVTNAFLVTGQSADFILELVARNMDDYSEILLRRIGKIDNV-VALHS 137 + V N L +A + V N+++Y LR +G ++V V+L S Sbjct: 58 ---TVLSHVANVVLTQEDTAKLLQSTVKHNLNNYD---LRSVGNGNSVLVSLRS 105
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 71.6 bits (175), Expect = 9e-18 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 10/168 (5%) Query: 1 MSKKEDIINTALNLFNQIGYNATGVDRIIAESNVAKMTFYKYFPSKENLIMECLQHRNLN 60 ++ I++ AL LF+Q G ++T + I + V + Y +F K +L E + N Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 IQNSINEQLSLHQDANPLEK----IHIIFNWYIEWINSETFNGCLFKKAFI--EVSKQYT 114 I + + +PL + + + +F K E++ Sbjct: 70 IG-ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 115 SIREPFYEYTKWLTHLLQEQLTRLGI---ENPTPLTHIIISIIDGMII 159 + R E + L+ + + I+ I G++ Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 7e-11 Identities = 17/82 (20%), Positives = 37/82 (45%) Query: 3 RQAQFRAREVLIFQVAEQLLLENGEAGMTLDVLAAELDLAKGTLYKHFQSKDELYMLLII 62 + + + I VA +L + G + +L +A + +G +Y HF+ K +L+ + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 63 RNERMLLEMVQDTEKAFPEHLA 84 +E + E+ + + FP Sbjct: 65 LSESNIGELELEYQAKFPGDPL 86
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 46.8 bits (111), Expect = 3e-09 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 11/59 (18%) Query: 10 QKGFTLIEVMVVIVIMTIMTSLVVLNI-GGVDQKKAMQAR----------ELFLLDVHK 57 Q+GFTL+E+MVVIVI+ ++ SLVV N+ G ++ +A +++ LD H Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHH 65
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 38.4 bits (89), Expect = 2e-06 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 1 MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAL 55 M+ +GFTLLE+M+ L + V+A V + + S ++ +T A+F A Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGM---VLLAFPASRDDSAAQTLARFEAQLRFVQ 52
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 29.5 bits (66), Expect = 0.007 Identities = 11/26 (42%), Positives = 16/26 (61%) Query: 62 RLTRASGFTLVELLVAIAIFAVLSLL 87 + GFTL+E++V I I VL+ L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASL 28
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 120 bits (303), Expect = 5e-32 Identities = 79/371 (21%), Positives = 140/371 (37%), Gaps = 76/371 (20%) Query: 22 IGIDLGTTHSLVATVLSGKPKVLNDEKERRLLPSIV---HYGNDATHY----GEEAKPFL 74 + IDLGT ++L+ + G+ VLN+ PS+V + G +AK L Sbjct: 13 LSIDLGTANTLIY--VKGQGIVLNE-------PSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 75 IADPKNTIVSVKRFMGRSKADIKFQHPYELVGSENEMPAFETHAGRKTPVEISAEILKQL 134 P N I +++ AD ++ +KQ+ Sbjct: 64 GRTPGN-IAAIRPMKDGVIADFF------------------------VTEKMLQHFIKQV 98 Query: 135 KDRAEASLQNPINGAVITVPAYFDEAQRQATRDAAQLAGLNVLRLLNEPTAAAVAYGLDQ 194 S P ++ VP + +R+A R++AQ AG + L+ EP AAA+ GL Sbjct: 99 HSN---SFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPV 155 Query: 195 ETNLATDHNYVIYDLGGGTFDVSILRFSQGVFEVLATGGHTALGGDDLDRLIVKWAKKQL 254 + ++ D+GGGT +V+++ + V +GGD D I+ + ++ Sbjct: 156 SEATGS----MVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNY 206 Query: 255 NIDTLNDETYAVFIVAARQAKEQLST------QESVQLK---LLENL---LTLDRPTFES 302 + + T A + K ++ + ++++ L E + TL+ Sbjct: 207 GS-LIGEAT-------AERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILE 258 Query: 303 IIQVALDKTISVCKRVLRDAKLEL-SDIQN--VVLVGGSTRSYAIQQAVRNVFNQEPLCT 359 +Q L +S L EL SDI +VL GG + + + + Sbjct: 259 ALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVA 318 Query: 360 INPDEVVAIGA 370 +P VA G Sbjct: 319 EDPLTCVARGG 329
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 121 bits (305), Expect = 7e-40 Identities = 49/88 (55%), Positives = 68/88 (77%) Query: 2 NKSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTGR 61 NK +LI +AE ++K D+ A+DA ++++ L KG+ V L+GFG F V+ERAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGEELQIKATKVPSFKAGKGLKDSV 89 NP+TGEE++IKA+KVP+FKAGK LKD+V Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 28.5 bits (64), Expect = 0.006 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 139 IEQVAEQAQAPKEQVYGAIASVLPQVIDSLTPQGDS 174 I +VAE + K+ A+ +V V L +G+ Sbjct: 8 IAKVAEATELTKKDSAAAVDAVFSAVSSYLA-KGEK 42
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 65.2 bits (159), Expect = 5e-14 Identities = 75/380 (19%), Positives = 120/380 (31%), Gaps = 61/380 (16%) Query: 1 MKKLLLAAAVATLSINAVQAAPTLYGKLNVSINQVDNKNFDG-----KSDVTEVNSNSSR 55 MKK L+A +A L + A A TLYG + + + +G T + S+ Sbjct: 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59 Query: 56 IGVKGEEKLTDKLSAVYLAEWAISTDGSGSDTDLSARNRFIGLKTEGVGTLKVGK----- 110 IG KG+E L + L A++ E S +G+D+ R FIGLK G G L+VG+ Sbjct: 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLKG-GFGKLRVGRLNSVL 116 Query: 111 YDSYFKTAAGGNQDIFNDDTRLDITNIMYGENRLDNVVGFELDPKLLAGLTFNIMAQTGE 170 D+ D + I E RL + D AGL Sbjct: 117 KDTGDINPWDSKSDYLGVNK------IAEPEARL---ISVRYDSPEFAGL---------- 157 Query: 171 STSDSKQGETGKDSKNDSFDSVSTALGYENKDLGLAVAAAGDFGIKGKYAAYGLKDVYTD 230 S S Q ++ + +S Y+N + A + + K Sbjct: 158 --SGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEK---YQ 212 Query: 231 AYRVTGSYDIAKSGFVVGALWQHAEPTDDLTAYGQTYKSDGAVDKAGKAYRGLEEEAYAV 290 +R+ YD AL+ + Q + + V Sbjct: 213 IHRLVSGYD-------NDALY--------ASVAVQQQDAKLVEENYSHN------SQTEV 251 Query: 291 TAAYKIPNTKLKVKAEYASAETQVSGQADRK--IDLYGLGLDYQINKQARFYGIVAQQKR 348 A + + YA + D +G +Y +K+ + Sbjct: 252 AATLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQE 311 Query: 349 DWLNDDDKQTVVGTGIEYNF 368 T G G+ + F Sbjct: 312 GKGESKFVSTAGGVGLRHKF 331
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 41.5 bits (97), Expect = 2e-06 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 57 VVIAAETNISGKITAVKLLQSSGIKSLDLKLITAVENARFSP-YQENGVFYPVRFVQPFH 115 V + + G++ V++L + + ++ A+ R+ P +G+ + F Sbjct: 180 VKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGT 239 Query: 116 LE 117 E Sbjct: 240 TE 241
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 42.7 bits (100), Expect = 1e-07 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 4/74 (5%) Query: 67 ELAGRNRL---VLLDVKADEWGVITEVVLTRSSGLAELDEKSMNAVKLAKLKPYKINGKH 123 A R+ V + G + V + + + + NA++ + +P K Sbjct: 169 ARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSG- 227 Query: 124 VRFDVTLPLLFTLE 137 + ++ + T E Sbjct: 228 IVVNILFKINGTTE 241
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.0 bits (244), Expect = 1e-25 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Query: 15 ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHATQPIDLVILDIKMPELSGWEV 74 ILV +D+ I ++ L R G V N A DLV+ D+ MP+ + +++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 75 LNKIRQKAA-TPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQQN 133 L +I++ PV++++A + + + A GA D++ KPF+ E++ + L ++ Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 134 QQTPNRN 140 + Sbjct: 126 PSKLEDD 132
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 128 bits (323), Expect = 2e-38 Identities = 82/254 (32%), Positives = 118/254 (46%), Gaps = 16/254 (6%) Query: 8 RKVLITGAGNGIGAAIAEHLAQLGATVALIDFNCDLLVAKHQELVDKGYHVSSFCADIAN 67 + ITGA GIG A+A LA GA +A +D+N + L L + H +F AD+ + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 68 YEACQAAYEYFYNEIGFIDTLVNNAGISPKHQGHAHKIWQLSPEEWQRVVDVNLNGSFNL 127 A E+G ID LVN AG+ G H LS EEW+ VN G FN Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVL--RPGLIH---SLSDEEWEATFSVNSTGVFNA 123 Query: 128 IRILVPQMIKHKFGKIINTSSVAANAYLPVVACHYSATKAAIIGLTRHLAGELGAHNIHV 187 R + M+ + G I+ S A +A Y+++KAA + T+ L EL +NI Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAA-YASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 188 NAIAPGRIETPM--VLEVGNQVNQHVIDDT--------PLGRLGSPTEVAKVVEFLASND 237 N ++PG ET M L + VI + PL +L P+++A V FL S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 238 SSFVTGQVIDIAGG 251 + +T + + GG Sbjct: 243 AGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.0 bits (96), Expect = 7e-06 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 11/102 (10%) Query: 77 IGGFVFGPLANKYGRKNIMLVTMVMMALASLMIAFIPSYEEIGAWASGLLLVARLVQGFA 136 IG V+G L+++ G K ++L +++ S++ S+ + L++AR +QG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LIMARFIQGAG 116 Query: 137 HGGETATSYAYIAEIAPPKRR----GLWSSMSFFAVGAGSLL 174 A +A P + R GL S+ G G + Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158 Score = 31.8 bits (72), Expect = 0.005 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 67 VFAVGFVSRPIGGFVFGPLANKYGRKNIMLVTMVMMALASLMIAFIPSYEEIGAWASGLL 126 + G +S I G++ G L ++ G ++ + + ++++ L +F+ E +W ++ Sbjct: 298 IIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLL---ETTSWFMTII 354 Query: 127 LVARLVQGFAHGGETATSYAYIAEIAPPKR---RGLWSSMSFFAVGAGSLLATLFLAL 181 +V V G +T S + + + L + SF + G G + L++ Sbjct: 355 IV--FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 39.0 bits (91), Expect = 6e-05 Identities = 19/39 (48%), Positives = 25/39 (64%) Query: 532 YTINSAKALYLDKSIGTLEPGKKADMILVDRDIFKVSPE 570 YTIN A A L IG+LE GK+AD++L + F V P+ Sbjct: 409 YTINPAIAHGLSHEIGSLEVGKRADLVLWNPAFFGVKPD 447
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 3e-06 Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 5/89 (5%) Query: 62 LWIAIQQGKIVGSVQLSLVSKKNGVHRAEVEKLMVLTTVRKQGIATLLLNELENFSRKNG 121 ++ + +G +++ N A +E + V RK+G+ T LL++ ++++N Sbjct: 67 AFLYYLENNCIGRIKIR----SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 122 LRLLVLDTREGDVSEL-LYSKIGFVRVGV 149 L+L+T++ ++S Y+K F+ V Sbjct: 123 FCGLMLETQDINISACHFYAKHHFIIGAV 151
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 51.3 bits (123), Expect = 6e-10 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 24/129 (18%) Query: 1 MNILVVGANGRVGSHLVNTLAKMGHSVFA-------------GARKDSLSFTNPNIHFFE 47 M LV GA G +G H+ L + GH V AR + L+ P F + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA--QPGFQFHK 58 Query: 48 LDLLADLQKIIQGFESINIDVIYFTAGSRG--------KNLLQVDAFGAVKVMQAAQAVG 99 +D LAD + + F S + + ++ + + G + +++ + Sbjct: 59 ID-LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 100 IRRFILLSS 108 I+ + SS Sbjct: 118 IQHLLYASS 126
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.4 bits (247), Expect = 3e-27 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 15/250 (6%) Query: 4 LESKVIIITGASSGIGKASAKMLAAEGAKVIAVARNQERLNELVNEVTKHGDQITGFVAD 63 +E K+ ITGA+ GIG+A A+ LA++GA + AV N E+L ++V+ + F AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 64 VTNLDDAKKLAQFAKDTYGSVDILINNAGLMLFSYWSDLAIDDWNKMIDTNIKGYLNAIA 123 V + ++ + G +DIL+N AG++ L+ ++W N G NA Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 GVLPIMLEQKSGQILNMDSVAGHQVDPAAGIYCATKFFVQAMTESMRKDLGVNHGIRVNT 183 V M++++SG I+ + S + Y ++K T+ + +L + IR N Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA-EYNIRCNI 184 Query: 184 VSPGVINTG-----WADK-------VTDPEGRKAAQELNKIAIDPDDVARAVVYAL-NQP 230 VSPG T WAD+ E K L K+A P D+A AV++ + Q Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLA-KPSDIADAVLFLVSGQA 243 Query: 231 ENVTVNDLII 240 ++T+++L + Sbjct: 244 GHITMHNLCV 253
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.5 bits (66), Expect = 0.038 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 104 YGKNSFVATPNDTVLVPGINSATLAQKTGGEVVTGNTK--SNFVMQNFSLIF 153 GKN+ + LV G+N +L K+ E + + K +N + NF++ F Sbjct: 854 SGKNTLIQYTESIELVYGVNGESLYLKSPNETIKFSNKFFTNGLTNNFTICF 905
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.6 bits (214), Expect = 5e-22 Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 10/206 (4%) Query: 5 LNNRVAIVTGAGAGLGREHALLLARLGAKVVVNDLGSDVNGKGGSTMAAQKVVDEIIAAG 64 + ++A +TGA G+G A LA GA + D + K S++ A+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE---------A 56 Query: 65 GEAMANGASVTDIEQVQQMVDETIARWGRVDILINNAGILRDKTFSKMSLEDFRTVIDVH 124 A A A V D + ++ G +DIL+N AG+LR +S E++ V+ Sbjct: 57 RHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVN 116 Query: 125 LMGAVNCTKAVWDIMREQKYGRIVMTTSSSGLYGNFGQSNYSAAKMALVGLMQTLALEGE 184 G N +++V M +++ G IV S+ + Y+++K A V + L LE Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 185 KSNVRVNCLAP-TAATRMLEGLLPEE 209 + N+R N ++P + T M L +E Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADE 202
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (260), Expect = 5e-29 Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 10/252 (3%) Query: 7 GQVVLITGAASGFGALLAEQLAKYGAKLVLGDLNIEGLSTVVEPLRQAGVEVVAQVCDVS 66 G++ ITGAA G G +A LA GA + D N E L VV L+ A DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 67 CEADVQALVQSAVTQFGRIDVGINNAGMSPPMKSFIDTDEADLDLSFAVNAKGVFFGMKH 126 A + + + G ID+ +N AG+ P +DE + + +F+VN+ GVF + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE-EWEATFSVNSTGVFNASRS 126 Query: 127 QIRQMLQQGGGIILNVASVAGLGAAPKLAAYAAAKHAVVGLTKTAAIEYANKGIRVNAIC 186 + M+ + G I+ V S +AAYA++K A V TK +E A IR N + Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 187 PFYTTTPMVV------DSELKEKQDFLAQ---ASPMKRLGHPSEVVAMMLMMCAKENSYL 237 P T T M + + + L P+K+L PS++ +L + + + ++ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 238 TGQAIAIDGGVT 249 T + +DGG T Sbjct: 247 TMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 128 bits (323), Expect = 3e-38 Identities = 87/255 (34%), Positives = 123/255 (48%), Gaps = 9/255 (3%) Query: 8 LTGKIALVTGASRGIGEEIAKLLAEQGAHVIVSSRKVEDCQRVANEIIAANGKAEAVACH 67 + GKIA +TGA++GIGE +A+ LA QGAH+ E ++V + + A AEA Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 VGKLEDIAEIFEYIRKEHGRLDILVNNAAANPYFGHILDTDIAAYNKTVEVNIRGYFFMS 127 V I EI I +E G +DILV N A G I + T VN G F S Sbjct: 66 VRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 128 VEAGKLMKEQGGGAIVNTASVNALQPGDQQGIYSITKAAVVNMTKAFAKECGPLGIRVNA 187 K M ++ G+IV S A P Y+ +KAA V TK E IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 188 LLPGLTKTKFASALFENED--------IYTNWMSSIPLRRHAEPREMAGTVLYLVSDAAS 239 + PG T+T +L+ +E+ + + IPL++ A+P ++A VL+LVS A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 240 YTNGECIVVDGGLTI 254 + + VDGG T+ Sbjct: 245 HITMHNLCVDGGATL 259
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.9 bits (124), Expect = 1e-10 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 15/173 (8%) Query: 12 SVLHTSRYLFNKYGFHNVGVDRIIESTKVPKATFYNYFHSKERLIEMSLTFQKDGLKQEV 71 +L + LF++ G + + I ++ V + Y +F K L + + E+ Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI-GEL 73 Query: 72 ISIIHVQKELTLVEKLRKIY--FLHADLEGLYHLPFKAIFEISKTHPKAYQVVVDYRNWL 129 + + LR+I L + + I VV + L Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNL 133 Query: 130 IKEIYNLLLATNENASKQD-----------AHMFLFVIDGAMVQ-LLDPNKPD 170 E Y+ + T ++ + A + I G M L P D Sbjct: 134 CLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.3 bits (115), Expect = 3e-08 Identities = 40/179 (22%), Positives = 65/179 (36%), Gaps = 5/179 (2%) Query: 33 IICFLIIFTDGIDTAAMGFIAPALAQDWGVDRSQ---LGPVMSAALGGMIIGALVSGPTA 89 I+ + D + + + P L +D G +++ A V G + Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 90 DRFGRKIVLAVSMLIFGGFTLASAYATNLDSLVVLRFLTGIGLGAAMPNATTLFSEYCPT 149 DRFGR+ VL VS+ A A L L + R + GI GA A ++ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDG 126 Query: 150 RIRSLLVTCMFCGYNLGMATGGFISSWLIPTYGWHSLFLLGGWSPLILMILVIFVLPES 208 R+ M + GM G + + + H+ F + + F+LPES Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Score = 29.0 bits (65), Expect = 0.035 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 11/132 (8%) Query: 289 LPTLMRETGASMERAAFIG---GLFQFGGVVSALFIGWAMDKFNPNRVIAIFYFAAGLFA 345 LP L+R+ S + A G L+ A +G D+F V+ + L Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLV-----SLAG 82 Query: 346 IAVGQSL-GNSTLLAVLVLCAGIA-INGAQSSMP-ALSARFYPTQCRATGVSWMTGIGRF 402 AV ++ + L VL + +A I GA ++ A A RA +M+ F Sbjct: 83 AAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 403 GAVFGAWIGAVL 414 G V G +G ++ Sbjct: 143 GMVAGPVLGGLM 154
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.7 bits (67), Expect = 0.010 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 221 AEFMQRAINNSQLAKLE-ASHLSNIEQPQRFTQELTRFIQ 259 Q+ + + ++ SH + E P + + R Q Sbjct: 139 LTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQ 178
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 204 bits (520), Expect = 6e-65 Identities = 78/284 (27%), Positives = 124/284 (43%), Gaps = 24/284 (8%) Query: 116 TTQSNPDWGLDRIDQKALPLNSAYSYLQTGSGTTAYIVDTGILSSHQQFSGRVLSGYTAI 175 + G++ I A+ + G G ++DTG + H R++ G Sbjct: 17 QQVNEIPRGVEMIQAPAVWNQT------RGRGVKVAVLDTGCDADHPDLKARIIGGRNFT 70 Query: 176 SDGNG----TSDCNGHGTHVAGTVGGS-----TYGVAKNVNLVPIRILGCDGSGASSNVI 226 D G D NGHGTHVAGT+ + GVA +L+ I++L GSG +I Sbjct: 71 DDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWII 130 Query: 227 AGLDWILKNGKKPAVVNMSLGGDASTS-LDSAVENLFNNGYVMVVAAGNSNTDACS---- 281 G+ + ++ +++MSLGG L AV+ + +++ AAGN Sbjct: 131 QGIYYAIEQKVD--IISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDEL 188 Query: 282 ASPARVSKALTVAATDNTDTRASYSNYGSCVDIFAPGSQINSSWIGSNTATKVLNGTSMA 341 P ++ ++V A + + +SN + VD+ APG I S+ G AT +GTSMA Sbjct: 189 GYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYAT--FSGTSMA 246 Query: 342 TPHVAGVVAEMLQSTPTATPQTISTNLLNQASSNVVKNPSGSPN 385 TPHVAG +A + Q + + ++ L SP Sbjct: 247 TPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPK 290
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.4 bits (66), Expect = 0.011 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Query: 161 PIQKTHLNHALNLTKEDILKYSPIHHKEQIDTPCTI--LC 198 L ++ ++D++ YSP+ K + T+ LC Sbjct: 81 DAGDEQLERKIHYRQQDLVDYSPVSEK-HLADGMTVGELC 119
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 9e-08 Identities = 60/341 (17%), Positives = 121/341 (35%), Gaps = 17/341 (4%) Query: 16 VGTFMPYWSLYLQDQGFNYQ---EIGVLSSIAIVTRFFAPLVWGWIADKSGKRMLLVRLA 72 +G MP L+D + G+L ++ + +F V G ++D+ G+R +L L Sbjct: 21 IGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVL--LV 78 Query: 73 TWMESCIWLAIFIVPNTFQSIALLMLIFSFFQNAILAQFEGVTLFWLGDQKAKLYGKIRK 132 + + + AI + + ++ + GD++A+ +G + Sbjct: 79 SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSA 138 Query: 133 WGSVGFIVGVFVIGALLEIVPISMLPILLLIIASLAFIWS-FTIREP---DGAPTSQKQL 188 G + G V+G L+ + L F+ F + E + P ++ L Sbjct: 139 CFGFGMVAGP-VLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREAL 197 Query: 189 EPL----LPVLKRPTVAAFFTIEFILLFSHAPFYSFYSNFLKSLNFSTTEIGF-LWAMGV 243 PL A + L P + ++ T IG L A G+ Sbjct: 198 NPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI 257 Query: 244 CAEIFMFSIAPKVFQRFSWRSLVIVCLLVTSIRWMLVALFSHYFVGQLFTQCLHAFSFGL 303 + I V R R +++ ++ ++L+A + ++ L + G+ Sbjct: 258 LHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM 317 Query: 304 FHLIAMRVIFQNFSAGQQGRGQALYSTMWGLGVAFGSVLAG 344 L AM + + +QG+ Q + + L G +L Sbjct: 318 PALQAM--LSRQVDEERQGQLQGSLAALTSLTSIVGPLLFT 356
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 274 bits (703), Expect = 5e-82 Identities = 133/736 (18%), Positives = 244/736 (33%), Gaps = 64/736 (8%) Query: 107 LKGIQFKYLENEQALNLQVPSNMLTDYSVDLNGQQITSPHLLKMKPLNAAILNYSLY-HT 165 + + +Q LNL +P ++ N + P L +NA +LNY+ ++ Sbjct: 142 IHDATAQLDVGQQRLNLTIPQAFMS------NRARGYIPPELWDPGINAGLLNYNFSGNS 195 Query: 166 VTNDENVFSGSVEGIFNSAIGNFSSGVL-------YNGSNETSYSHEKWVRLESKWQYVD 218 V N S S + N + L YN S+ +S S KW + + + Sbjct: 196 VQNRIGGNSHYAYLNLQSGL-NIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDI 254 Query: 219 PEKIRIYTLGDFISNSSDWGSSVRLAGFQWSSAYTQRGDIVTSALPQFSGSAALPSTLDL 278 TLGD + + + G Q +S D P G A + + + Sbjct: 255 IPLRSRLTLGDGYTQGDIF-DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTI 313 Query: 279 YVNQQKIYSGLVPSGPFDIKQLPFISG-NEVTLVTTDATGQQSITKQAYYFSSKILAKGI 337 N IY+ VP GPF I + ++ + +A G I Y + +G Sbjct: 314 KQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGH 373 Query: 338 NEFSVDVGVPRYNYGLYSNDYDDATFASGAIRYGYSNSLTLSGGAEASTDGLSNLGTGFA 397 +S+ G R F + +G T+ GG + + D G Sbjct: 374 TRYSITAGEYRSGNAQQEKPR----FFQSTLLHGLPAGWTIYGGTQLA-DRYRAFNFGIG 428 Query: 398 KNLFGFGVINADIAASQYKDENGYSALVGLEGRISKNISFN--------TSYRKVFDNYF 449 KN+ G ++ D+ + + S G R N S N YR YF Sbjct: 429 KNMGALGALSVDMTQANSTLPDD-SQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYF 487 Query: 450 DLARVSQVRY------LKDNQTDAEPKNYLSYSALADEIFRAGINYNFYEG-YGA-YLGY 501 + A + R +D +PK Y+ ++ + + G YL Sbjct: 488 NFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG 547 Query: 502 NQIKFSENSYKLVSANLSGSLNKNWGFYS---SAYKD-YENHKDYGIYFAL-------RY 550 + + S + ++ S K+ ++ +D + + Sbjct: 548 SHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLR 607 Query: 551 TPSTRVNTITSIS-----NESGKTTYRQEINGFSDPQIGAFGWG---GYVERDQDANQNN 602 + S S S + +G+ T + G + + + GY + + Sbjct: 608 SDSKSQWRHASASYSMSHDLNGRMTNLAGVYG-TLLEDNNLSYSVQTGYAGGGDGNSGST 666 Query: 603 ASIYASYRARAAYLTGRYNRIGDNDQVALSATGSLVAAAGRIFAANEIGDGYAVVTNAGP 662 +YR Y+ D Q+ +G ++A A + + D +V G Sbjct: 667 GYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGA 726 Query: 663 QSQILNGGVNLGATDRTGRFLISNLRPYQLHHIYLDPSYLPLEWDVTSTNQTAFVGYRQG 722 + + TD G ++ Y+ + + LD + L D+ + Sbjct: 727 KDAKVENQ-TGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAI 785 Query: 723 ALIDFGAHQVISGLVKLVDSNNSALLPGYSVR-INGQQDGVVGYDGEVFIPNLLKQNKLE 781 +F A I L+ + NN L G V + Q G+V +G+V++ + K++ Sbjct: 786 VRAEFKARVGIKLLM-TLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQ 844 Query: 782 V--DLLDHGSCQVNFA 795 V ++ C N+ Sbjct: 845 VKWGEEENAHCVANYQ 860
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 2e-11 Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 12/169 (7%) Query: 5 NRDQRREMILQAAMQVALAEGFTAMTVRRIASEAQTSTGQVHHHFSSASHLKAEAFLKLM 64 + R+ IL A+++ +G ++ ++ IA A + G ++ HF S L +E + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 EQLDEIEQAL----------QTTSQFQRLFILLGAENIDRLQPYLRLWNEAELLIEQDIE 114 + E+E + E RL + + + + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRL--LMEIIFHKCEFVGEMAV 125 Query: 115 IQKAYNLAMQSWHQTIVQAIECGKKDGEFKTLSNSTDIAWRLIAFVCGL 163 +Q+A + I Q ++ + + A + ++ GL Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.9 bits (186), Expect = 1e-17 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 23/262 (8%) Query: 220 AKPLAGKTALVTGASRGIGEAIAHVLARDGAHVICLD-VPQQQADLDRVAADIGGSTLAI 278 AK + GK A +TGA++GIGEA+A LA GAH+ +D P++ + A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 279 DITAADAG---EKIKTAAAKQGGLDIIVHNAGITRDKTLANMKPELWDLVININ----LS 331 D+ E + G +DI+V+ AG+ R + ++ E W+ ++N + Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 332 AAERVNDYLLENDGLNANGRIVCVSSISGIAGNLGQTNYAASKAGVIGLVKFTA-PILKN 390 A+ V+ Y+++ G IV V S YA+SKA + K + + Sbjct: 123 ASRSVSKYMMDRRS----GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 391 GITINAVAPGFIETQMTAAIPFAIREAGRRMNS----------MQQGGLPVDVAETIAWF 440 I N V+PG ET M ++ A + + +++ P D+A+ + + Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 441 ASTASTGVNGNVVRVCGQSLLG 462 S + + + + V G + LG Sbjct: 239 VSGQAGHITMHNLCVDGGATLG 260
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 31.8 bits (72), Expect = 0.004 Identities = 40/191 (20%), Positives = 63/191 (32%), Gaps = 36/191 (18%) Query: 200 TLGQAIPITN---LGNKSKAAS------IRAWTPTIEAQYQFGKSGVNKFRPYIGAGLMY 250 T+ QA P N G K + I PT E Q G G + PY+G + Y Sbjct: 17 TVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGY 76 Query: 251 AHFNDIKLNDGIRSDLVSA---------GHMIQNVLD--GKAGAALDRKESSGKMVVNVD 299 + + + A G+ I + LD + G + R ++ V + Sbjct: 77 DWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSN-VYGKN 135 Query: 300 ADDAIAPIFTAGFTYDFNDSWYTVASVSYAKLSNKAQIDVVNQNTGTRLIHATTKVDIDP 359 D ++P+F G Y T + Y +N + ++ Sbjct: 136 HDTGVSPVFAGGVEYAITPEIAT--RLEYQWTNNIGDAHTIGTRPDNGMLS--------- 184 Query: 360 LITYLGVGYRF 370 LGV YRF Sbjct: 185 ----LGVSYRF 191
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.2 bits (73), Expect = 5e-04 Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 13/135 (9%) Query: 7 DEQNEDVEAIEELTKAAFKNAEHTSHTEHFIVNSLRNHG--QLTISLVAIEDGSVIGHVA 64 ++ NE + AF+N T E F + + + +S V E + + Sbjct: 14 NKPNEPFVVFGRMI-PAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYL 72 Query: 65 ----ISPVQMSSGEMGWYGLGPISVHPNKQGLGIGSLLMNKSLDKLKKLGAEGCVL---- 116 I +++ S G+ + I+V + + G+G+ L++K+++ K+ G +L Sbjct: 73 ENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132 Query: 117 --LGDPNYYSRFGFK 129 + ++Y++ F Sbjct: 133 INISACHFYAKHHFI 147
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.0 bits (119), Expect = 5e-10 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 5 EASFRALQVLHAAKDLFNQHGFH-VGIDRIISEAKIPKATFYNYFHSKEKLVE 56 EA +L A LF+Q G + I A + + Y +F K L Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 2e-17 Identities = 35/123 (28%), Positives = 63/123 (51%) Query: 2 RILLVEDEIKTGDYLKQGLSEAGYITDWVTDGLSGKHQALVEEYDLIILDVMLPKLDGWN 61 IL+ +D+ L Q LS AGY ++ + + DL++ DV++P + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 IINDIRKSGKTMPILFLSARDQIEDRVKGLELGADDYLVKPFAFAELLARIKSLLRRGQQ 121 ++ I+K+ +P+L +SA++ +K E GA DYL KPF EL+ I L ++ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 KED 124 + Sbjct: 125 RPS 127
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 56.2 bits (135), Expect = 1e-11 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 10/163 (6%) Query: 18 VGASQGIGAAVCHRFAKEGLKVYVAGRTFQKIEAVAAEIHSKGGDAVAFRLDAEDVKQVQ 77 GA+QGIG AV A +G + +K+E V + + ++ A AF D D + Sbjct: 14 TGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAID 73 Query: 78 ALFDTITSQNERITAVIHNVGGNIPSIFLRSPL-SFFTQMWQSTF----LSAYLVSQSCL 132 + I + I ++ N+ + + S + W++TF + S+S Sbjct: 74 EITARIEREMGPIDILV-----NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 133 KIFKDQNHGTLIFTGASASLRGKPFFAAFTMGKSALRAYALNL 175 K D+ G+++ G++ + + AA+ K+A + L Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCL 171
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 33.1 bits (75), Expect = 7e-04 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%) Query: 64 STRIARYLDETYPDTPRLYPEDPNQKALAELWEDW 98 S+ +A Y D Y + P + E+ K L LW W Sbjct: 67 SSLLAVYSDHIYRNQPMMIREN---KPLISLWAQW 98
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 55.3 bits (133), Expect = 2e-12 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 5/92 (5%) Query: 43 ENRESVFFIHIKDDKITGFVLLYLGFSSVACSTYYILDDVYVTPIFRRQGSAKQLIDTAI 102 E F++ ++ G + + + Y +++D+ V +R++G L+ AI Sbjct: 61 EEEGKAAFLYYLENNCIGRIKI-----RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAI 115 Query: 103 LFAKQQNALRISLETQSNNHESHRLYEQMGFI 134 +AK+ + + LETQ N + Y + FI Sbjct: 116 EWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.4 bits (136), Expect = 7e-11 Identities = 73/385 (18%), Positives = 144/385 (37%), Gaps = 20/385 (5%) Query: 15 SLFLAIFSLAVGGFCIGTTEFVAMGLIQEIANNLKITVPEAGHFISAYALGVVIGAPIIA 74 L + + ++A+ IG V GL++++ ++ + G ++ YAL AP++ Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDV-TAHYGILLALYALMQFACAPVLG 64 Query: 75 ILGAKVPRKTLLLGLMLFYGIANACTALAHTPETVLVSRFIAGLPHGAYFGVGALVAAEL 134 L + R+ +LL + + A A A + + R +AG+ GA V A++ Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADI 123 Query: 135 AGPSRRASAVAQMMMGLTVATVIGVPLATWLGQNFGWRAGFEFSAAIAFFTLIAVGFFVP 194 RA M V G L +G F A F +AA+ + F +P Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLP 182 Query: 195 NIPVQ----AKASIKTELAGLKNINMWLTLAVGAIGFGGMFSVYSYVSPILTEYTQ---- 246 + LA + +A F M V + + + + Sbjct: 183 ESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFH 242 Query: 247 VNIQIVPIALAIWGI-GMVIGGLAAGWLADKNLNKTIVGV-LISSAIAFVVASFLMSNIY 304 + + I+LA +GI + + G +A + + + + +I+ +++ +F + + Sbjct: 243 WDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA-TRGW 301 Query: 305 TAIASLFLIGLTVMGLGGALQTRL-MDVAGEAQTLAASLNHSAFNMANALGAFLGGWVLS 363 A + L+ +G+ ALQ L V E Q + ++ + +G L + + Sbjct: 302 MAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 364 HQMGWIAPIWVGFVLSLGGLIILLI 388 W G+ G + LL Sbjct: 361 AS----ITTWNGWAWIAGAALYLLC 381
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 59.5 bits (144), Expect = 9e-12 Identities = 74/402 (18%), Positives = 145/402 (36%), Gaps = 51/402 (12%) Query: 25 WLVFALTFGLLISDYMSRQVLNAVFPLLKTEWLLSDSQLGLLSGIVALMVGLLTLPLSLL 84 WL F + ++ VLN P + ++ + ++ L + T L Sbjct: 18 WLCILSFFSV-----LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 85 ADRFGRVKSLAIMAALWSLATLGCALAENYEQMFI-ARFMVGVGEAAYGSVGIAVVVAVF 143 +D+ G + L + ++ + ++ + I ARF+ G G AA+ ++ + VV Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI 132 Query: 144 PREMRATLASAFMAGGVFGSFLGMALGGVLAQHFGWRWAFGAIALFGLILAFLYPVLVKE 203 P+E R + G +G A+GG++A + W + + + + FL +L KE Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKE 192 Query: 204 KRIASSHQ-----------------NKNRSKLKDIQSPLKTLYSSRSVIAT---YIGSGL 243 RI + S I S L L + + ++ GL Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 244 --------QLFVGGTVIV-------WMPSYLNRYYGMSTDKAGVMAAVIVLCSAVGTILC 288 + GG + +P + + +ST + G +VI+ + I+ Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIG---SVIIFPGTMSVIIF 309 Query: 289 GMLCDYLGRNCPDRKVSLAITY---CLVSCVLLLIAFAVPAGRSQLLLICLGMFIALGTN 345 G Y+G DR+ L + +S L +F + + +I + + L Sbjct: 310 G----YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365 Query: 346 GPSSAMVANLTHNSVHGSAFATLTLANNFLGLALGPLVVGKI 387 + + + + A +L +FL G +VG + Sbjct: 366 KTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.2 bits (135), Expect = 5e-12 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 6/173 (3%) Query: 17 REELLDAGLAHLKNSDAESLSFREMARQIGVSGNAVYRHFENKESFLAALAAKGFKLLQE 76 R+ +LD L S S E+A+ GV+ A+Y HF++K + + + E Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 77 EQSQTLQDANSQPEA----LKLFGLAYINFAKNNRNLFALMFNPDLQKNEALELKEAVGN 132 + + P + + + L + R L ++F+ E +++A N Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 133 TYTQLHQLTASIL--GVDENDAQVEVLAMLSCSLVHGLSHLLLEGRLAESEEK 183 + + L ++ +++ + ++ G L+E L + Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSF 185
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.4 bits (247), Expect = 5e-27 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 17/233 (7%) Query: 5 QVVVITGVSSGIGQVTAEKFAKKGHKVFGTVRNKVKAQPIEGVELIE--------MDVSD 56 ++ ITG + GIG+ A A +G + N K + + E DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 57 EDSVQLGIHSIIDKAGRIDILINNAGASLTGAIEETSIKEAEFLFNTNVFSILRTIQAVL 116 ++ I + G IDIL+N AG G I S +E E F+ N + ++V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 117 PYMRIQHYGRIINISSVLGFLPSPYMGVYSATKHAVEGLSESLDHELRQFGIRVTLVQPS 176 YM + G I+ + S +P M Y+++K A ++ L EL ++ IR +V P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 177 FTKTNLDKNAPVVSSKIPEYDNER----NLATQAISNQINHGSQPDDVADTIV 225 T+T++ S E E+ +L T + ++P D+AD ++ Sbjct: 189 STETDMQW-----SLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 437 bits (1126), Expect = e-139 Identities = 224/1046 (21%), Positives = 427/1046 (40%), Gaps = 61/1046 (5%) Query: 8 LSALAVRERGITLFLIFLISVAGIVAFFKLGRAEDPAFTVKVMTIVTAWPGATAQEMQDQ 67 ++ +R L ++ +AG +A +L A+ P +++ +PGA AQ +QD Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 68 VAEKIEKRMQELRWYDRTETYT-RPGLAFTTLTLLDSTPPSQVQEEFYQARKKANDEMSN 126 V + IE+ M + + + G TLT T P Q Q + K Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 127 LPSGVIGPLVNDEYADVTFTLYAL--KAKNEAQRLLVRD--AETIRQQLLHVPGVKKVNI 182 LP V ++ E + ++ + A + + D A ++ L + GV V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 183 IGEQPERIYIEFSHERLATLGVNPQDVFAALNNQNVLTPAGSIET------KGPQVFVRL 236 G Q + I + L + P DV L QN AG + + + Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 237 DGAFDKLQKIRDTPI--TAQGRTLKLSDIATVKRGYEDPATFIIRNDGEPALLLGVVMRE 294 F ++ + + G ++L D+A V+ G E+ R +G+PA LG+ + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIA-RINGKPAAGLGIKLAT 295 Query: 295 GWNGLDLGKALESEVGSINEDLPLGISLNKVTDQAVNISSSVNEFMIKFFAALLVVMFVS 354 G N LD KA+++++ + P G+ + D + S++E + F A+++V V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 355 FISMG-WRVGLVVAMAVPLTLAIVFVAMLATGKNFDRITLGSLILALGLLVDDAIIAIEM 413 ++ + R L+ +AVP+ L F + A G + + +T+ ++LA+GLLVDDAI+ +E Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 414 MV-VKMEEGFSRIAASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVG 472 + V ME+ A+ + S ++ +V + F+P F + G + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 473 IALIASWIVAVVFTPYLGVKMLPDFKKVEGGHHAIYDT--PRYNR-FRQILERV--IVRK 527 A+ S +VA++ TP L +L K V HH +N F + V K Sbjct: 476 SAMALSVLVALILTPALCATLL---KPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 528 WL-VAGSVIGLFVLAIGGM----TLVKKQFFPISDRPEVLVEVQMPYGTSITQTSATTAK 582 L G + ++ L + GM + F P D+ L +Q+P G + +T + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 583 IEAWLSKQNEAKIVTSYIGQGAPRFYLSMGPELPDPSFAKIVI-----RTDNQEEREALK 637 + + K NE V S S + + A + + R ++ EA+ Sbjct: 593 VTDYYLK-NEKANVESVFTVNG----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 638 HRLRQAV-----SNGLASEAQVRVTQLVFGPYSPYPVAYRVTGPDPEKLRVIAAQVQHVM 692 HR + + + V + + G + L Q+ + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELID--QAGLGHDALTQARNQLLGMA 705 Query: 693 NASP-MMRTVNTDWGTRTPALHFTLQQDRLQAVGLTSASVAQQLQFLLTGIPITSVREDI 751 P + +V + T + Q++ QA+G++ + + Q + L G + + Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 752 RTVQVVARSAGDIRLDPAKIGDFTLTGANGQRIPLSQIGKIEVRMEEPVIRRRDRVPTIT 811 R ++ ++ R+ P + + ANG+ +P S P + R + +P++ Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825 Query: 812 VRGDIAEGLQPPDVSTAITKQLQSVIKNLPKGYHIVEAGSIEESGKATKAMLPIFPIMLA 871 ++G+ A G D + +++ LP G G + + + I Sbjct: 826 IQGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 872 MTLLIIILQVRSIAAMIMVFLTSPLGLIGVVPTLLLFQQPFGINALVGLIALSGILMRNT 931 + L + S + + V L PLG++GV+ LF Q + +VGL+ G+ +N Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 932 LILIGQIQQNKQA-GLDPLDAVVEATVQRARPVILTALAAILAFIPLTHSVFWGT----- 985 ++++ + + G ++A + A R RP+++T+LA IL +PL S G+ Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 986 LAYTLIGGTLAGTILTLVFLPAMYSI 1011 + ++GG ++ T+L + F+P + + Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVV 1027 Score = 79.9 bits (197), Expect = 3e-17 Identities = 57/325 (17%), Positives = 128/325 (39%), Gaps = 20/325 (6%) Query: 711 ALHFTLQQDRLQAVGLTSASVAQQLQF----LLTGIPITSVREDIRTVQVVARSAGDIRL 766 A+ L D L LT V QL+ + G + + + + + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK- 241 Query: 767 DPAKIGDFTL-TGANGQRIPLSQIGKIEVRMEEPVIRRR-DRVPTITVRGDIAEGLQPPD 824 +P + G TL ++G + L + ++E+ E + R + P + +A G D Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 825 VSTAITKQLQSVIKNLPKGYHIVEA----GSIEESGKATKAMLPIFPIMLAMTLLIIILQ 880 + AI +L + P+G ++ ++ S L IML L++ L Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL-FEAIMLV--FLVMYLF 358 Query: 881 VRSIAAMIMVFLTSPLGLIGVVPTLLLFQQPFGINALVGLIALSGILMRNTLILIGQIQQ 940 ++++ A ++ + P+ L+G L F + G++ G+L+ + ++++ +++ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 941 -NKQAGLDPLDAVVEATVQRARPVILTALAAILAFIPL-----THSVFWGTLAYTLIGGT 994 + L P +A ++ Q ++ A+ FIP+ + + + T++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 995 LAGTILTLVFLPAMYSIWFKIRVKP 1019 ++ L+ PA+ + K Sbjct: 479 ALSVLVALILTPALCATLLKPVSAE 503
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 2e-07 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 17/135 (12%) Query: 34 APLVRVATVQEEITSDSRAFTGTIGARVESDLGFRVSGKVIKRFVEAGQTVKRGQLLMRI 93 + VAT ++T R+ ++ V + V+ G++V++G +L+++ Sbjct: 78 GQVEIVATANGKLTHSGRSKE------IKPIENSIVK----EIIVKEGESVRKGDVLLKL 127 Query: 94 DPVDLELAAKAQQEAVGAAKARAE-------QAEKDEARYRDLRGSGAISASAYDQIKAA 146 + E Q ++ A+ E ++ L + +++ Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 147 ADTARAQLSSTQAQA 161 + Q S+ Q Q Sbjct: 188 TSLIKEQFSTWQNQK 202
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 2e-11 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 6/192 (3%) Query: 21 RDQIVVAATEHFSRYGYEKTTVSDLAKSIGFSKAYIYKFFESKQAIGEMICANCLREI-E 79 R I+ A FS+ G T++ ++AK+ G ++ IY F+ K + I I E Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 80 DEVNAAIQEAEYPAEKLRVLFK-----VIVEGSLRLFSQDRKLYEIAVSAASEKWDATVA 134 E+ + P LR + + E RL + V + A Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 135 YENRILKVLQNIIQEGRQTGDFERKTPIDEAVKAIYLVMRPYLHPLLLQHSISYNADAPV 194 ++ ++ + A + + + L Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEAR 192 Query: 195 LLSSLVLRSLSP 206 +++L Sbjct: 193 DYVAILLEMYLL 204
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 3e-08 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 10/99 (10%) Query: 108 EAELNRAKAQLASAEAQVTYTATNLSRIQRLIQSNAVSRQELDLAENDARLASANLQAAR 167 EL K+QL E+++ + +L ++ + L + + L+ Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD----KLRQTTDNIGLLTLE--- 317 Query: 168 AAVQSARLNLEYTRITAPVSGRISRAEV-TVGNVVSAGN 205 + + + I APVS ++ + +V T G VV+ Sbjct: 318 --LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Score = 44.4 bits (105), Expect = 5e-07 Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 74 IRPQVSGKLIAVHFKDGSLIQKGDLLFTIDPRPFEAELNRAKAQLASAEA-QVTYTA--T 130 I+P + + + K+G ++KGD+L + EA+ + ++ L A Q Y Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 131 NLSRIQRLIQSNAVSRQELDLAENDARLASANLQAARAAVQSARLNLE 178 ++ + +++E + ++ ++ + Q+ + E Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1099 bits (2843), Expect = 0.0 Identities = 429/1042 (41%), Positives = 650/1042 (62%), Gaps = 18/1042 (1%) Query: 3 ISKFFIDRPIFAGVLSVLILLAGLLSVFQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 ++ FFI RPIFA VL++++++AG L++ QLP+++YP + PP+V V A YPGA+ + + +T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQAMPRLPE 122 V +E+++NG+++++YM S ++S G++TIT+ F+ G DPD AQ VQN++ A P LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVGEVGLFGS 182 +VQ+ G++ KSS + MV S + + +Y NVKD L+RL GVG+V LFG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 183 GDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPTNS--PVQLSVNAQGR 240 YAMR+WLD + + LT +++N ++ QN Q+AAG +G +P + S+ AQ R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 LTTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRSLLDNKQAVAIPIFQAPGANA 300 +EF + L+ DG+V RL DVARVEL Y + + ++ K A + I A GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 301 LQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRSSIKAVVHTLLEAIALVVVVVILFL 360 L + +++ + EL FP +K YD T FV+ SI VV TL EAI LV +V+ LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 361 QTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVER- 419 Q RA++IP +AVPV ++GTFA++ AFGYSIN L++FGMVLAIG++VDDAIVVVENVER Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 420 NIEAGLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479 +E L P++AT ++M ++ G ++ IA+ L AVF+P+AF G TG Y+QF++TI + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 480 ISAFNSLTLSPALAAMLLKGHDAKPDALTRIMNRIFGRFFALFNRVFTRASDNYGKGVSR 539 +S +L L+PAL A LLK ++ + G FF FN F + ++Y V + Sbjct: 480 LSVLVALILTPALCATLLKP-------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 540 VISHKASAMGVYAALLGLTVGISYIVPGGFVPAQDKQYLISFAQLPNGASLDRTEAVIRK 599 ++ + +YA ++ V + +P F+P +D+ ++ QLP GA+ +RT+ V+ + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 600 MSDTALK--QPGVESAVAFPGLSINGFTNSSSAGIVFVTLKPFDERKAKDLSANAIAGAL 657 ++D LK + VES G S +G + +AG+ FV+LKP++ER + SA A+ Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 658 NQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFM-KAAQSAP 716 + I+D ++ F P ++ LGT GF +L D+ LG+ AL A + AAQ Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 717 ELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFGRVYQV 776 L + + + Q +++D+ KA+ GV+++D+ T+ LG YVNDF GRV ++ Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 777 RAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSADINGGP 836 QADA FR PED+ +L R++ G+MVP S+ YG + RYNG S +I G Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 837 APGYSSSQAEAAVERIAAQTLPRGIKFEWTDLTYQKILAGNAGLWVFPISVLLVFLVLAA 896 APG SS A A +E +A++ LP GI ++WT ++YQ+ L+GN + IS ++VFL LAA Sbjct: 831 APGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 897 QYESLTLPLAVILIVPMGILAALTGVWLTGGDNNIFTQIGLMVLVGLACKNAILIVEFAR 956 YES ++P++V+L+VP+GI+ L L N+++ +GL+ +GL+ KNAILIVEFA+ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 957 EL-EMQGATAFNAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGIAVFFG 1015 +L E +G A + A R+RLRPILMTS+AFI+GV+PL S GAGS ++A+GI V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1016 MIGVTLFGLFLTPAFYVLIRTL 1037 M+ TL +F P F+V+IR Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031 Score = 86.0 bits (213), Expect = 4e-19 Identities = 89/461 (19%), Positives = 170/461 (36%), Gaps = 40/461 (8%) Query: 610 VESAVAFP-GLSINGFTN-------SSSAGIVFVTLKPFDERKAKDLSANAIAGALNQKY 661 V+ V ++NG N S SAG V +TL F D++ + L Sbjct: 57 VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLT-FQSGTDPDIAQVQVQNKLQLAT 115 Query: 662 SAIQDAYIAVFPPPPVMGLGTMGGFKLQLE---DRGALGYSALNDAAQNFMKAAQSAPEL 718 + + + + + D ++D + +K L Sbjct: 116 PLLPQE----VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK-----DTL 166 Query: 719 GPMFSSYQINV----PQLNVDLDRVKAKQQGVAVTDVFNTM-----QIYLGSQYVNDFNR 769 + + + + + LD + + DV N + QI G Q Sbjct: 167 SRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAG-QLGGTPAL 225 Query: 770 FGRVYQVRAQADAPFRANPEDILQLKTR-NSAGQMVPLSSLVNVTQTYGP-EMVVRYNGY 827 G+ A F NPE+ ++ R NS G +V L + V ++ R NG Sbjct: 226 PGQQLNASIIAQTRF-KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK 284 Query: 828 TSADINGGPAPGYSSSQ-AEAAVERIA--AQTLPRGIKFEWT-DLTYQKILAGNAGLWVF 883 +A + A G ++ A+A ++A P+G+K + D T L+ + + Sbjct: 285 PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL 344 Query: 884 PISVLLVFLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTGGDNNIFTQIGLMVLVGL 943 +++LVFLV+ +++ L + VP+ +L + G N T G+++ +GL Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 944 ACKNAILIVE-FARELEMQGATAFNAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGS 1002 +AI++VE R + A ++ ++ ++ +P+ G+ Sbjct: 405 LVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 1003 EMRHAMGIAVFFGMIGVTLFGLFLTPAF-YVLIRTLNSKHK 1042 + I + M L L LTPA L++ ++++H Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHH 505
>SECA#SecA protein signature. Length = 901 Score = 31.8 bits (72), Expect = 0.004 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 115 VATNTLARKDSKVLAIFGTGNQAKYE--CEALAKIRNFDQILIVG-RDQSKAEKMAEELK 171 V TN + ++ T K + E + + Q ++VG K+E ++ EL Sbjct: 412 VPTNRPMIRKDLPDLVYMT-EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 470 Query: 172 QLGIKIKITDAKEACEQADIIVTA 195 + GIK + +AK +A I+ A Sbjct: 471 KAGIKHNVLNAKFHANEAAIVAQA 494
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.1 bits (114), Expect = 4e-09 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 21/174 (12%) Query: 40 SVLHTSRYLFNKYGFHKVGVDRIIESSKTPKATFYNYFHSKERLIEMSLTFQKDGLKQEV 99 +L + LF++ G + I +++ + Y +F K L + + E+ Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI-GEL 73 Query: 100 ISIIYVQKDLTLLEKLRKIYFLHADLDGLYHLP----FKAIFEISKTHPKAYQVVIDYRN 155 + L LR+I L L+ I VV + Sbjct: 74 ELEYQAKFPGDPLSVLREI--LIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 156 WLINEIYNLL------------LTTNANASTQDAHMFLFVIDGAMVQ-LLDPNK 196 L E Y+ + L + A + I G M L P Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRA-AIIMRGYISGLMENWLFAPQS 184
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 61.6 bits (149), Expect = 4e-12 Identities = 58/392 (14%), Positives = 118/392 (30%), Gaps = 43/392 (10%) Query: 49 LVKPEDLPPPLAKEIEQETTATN-EAKEVLSPIVDETLAQNLPAVPPPPTAQ---QLAAE 104 V ++ P + + + +N E + A P+ A+ Q + Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 105 KQKAEQAQHAKLAEQKRKAEEAAKAKQATEQQRVEEAQKQQAEAKRQTEAKARAEAEQKR 164 +K EQ A+ + A+EA K +A QT A++ +E K Sbjct: 1051 VEKNEQDATETTAQNREVAKEA----------------KSNVKANTQTNEVAQSGSETKE 1094 Query: 165 KAEQSAKAEADAKARQKVAEEAKRKAETDAKLKREAQKSENAKLLAQQEAKRKAEAEAKA 224 K A + +K E ++ E + + K E ++ + Q A Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ-----------A 1143 Query: 225 KQQKANDDAKRKADADAKAKQQKANDDAKRKTDADAKAKQQKANEDAKRKADADAKAKQQ 284 + + ND + ++ + ++T ++ + Q E + Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE---QPVTESTTVNTGNSVVENPE 1200 Query: 285 KANEDAKRKADADAKAKQQKANEDAKRKADADAKAKQQKANDDAKRKADADAKAKQQKAA 344 + + + K ++ +++D A D + A Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNA- 1259 Query: 345 DDAKRKADADAKAKQQKAADDAKRKAEAEAEAKAASAQKAQEEAAQKKAEAKKVASSARR 404 +DA+AK Q A + + + + + K +SS R Sbjct: 1260 ------VLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYR 1313 Query: 405 DFEQK--IRRSWDVPTGSSGKTVGVRFTLSDS 434 F K + T S+ +G FT + Sbjct: 1314 RFSSKSTQTQLGWDQTISNNVQLGGVFTYVRN 1345 Score = 38.1 bits (88), Expect = 7e-05 Identities = 20/188 (10%), Positives = 56/188 (29%) Query: 277 ADAKAKQQKANEDAKRKADADAKAKQQKANEDAKRKADADAKAKQQKANDDAKRKADADA 336 + +A + + A D A + A+ +Q++ K + DA Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 337 KAKQQKAADDAKRKADADAKAKQQKAADDAKRKAEAEAEAKAASAQKAQEEAAQKKAEAK 396 Q + + + A ++ K E K + + +E+A + + + Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 397 KVASSARRDFEQKIRRSWDVPTGSSGKTVGVRFTLSDSGSVNSIVITRSSGDDALDASIK 456 +V + ++ + P + + + S + ++++ Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE 1180 Query: 457 AAIQASAP 464 + S Sbjct: 1181 QPVTESTT 1188
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.035 Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 11/110 (10%) Query: 173 AERYTLQIADTDGEQPKTVLSSRDPILSPAWTPDAKKIAYVSFETKRPAIYLQDLSTGTR 232 A R+ + + E PK +++ +D + ++++ V +E + D+ + + Sbjct: 138 ASRF---VFEKKRETPKLIINIKD------YAINSEQSKEVYYEIGK--GISLDIISKDK 186 Query: 233 EVLTSFKGLNGAPSFSPDGQSMLFTASMNGNPEIYQMDLSTRQVKRMTND 282 + F L + S D +LF+ E+ + +K + Sbjct: 187 SLDPEFLNLIKSLSDDSDSSDLLFSQKFKEKLELNNKSIDINFIKENLTE 236
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 109 bits (274), Expect = 4e-31 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 11/117 (9%) Query: 76 VHFDYDSSDLSTEDYQTLQAHAQFL--MANANSKVALTGHTDERGTREYNMALGERRAKA 133 V F+++ + L E L L + + V + G+TD G+ YN L ERRA++ Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 134 VQSYLITNGVNPQQLEAVSYGKEAPVNAGHDESA---------WKENRRVEINYEAV 181 V YLI+ G+ ++ A G+ PV ++ +RRVEI + + Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>PF07675#Cleaved Adhesin Length = 1358 Score = 32.0 bits (72), Expect = 0.003 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 19/136 (13%) Query: 172 TPRNAGDNTNIFGQSVTGGAATQAPFGGVTTSNGNQ-----------LPDGSEPAAFLRI 220 T NAGD T +F ++ G A FG T +NG + LP G++ AF Sbjct: 908 TGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHY 967 Query: 221 ARQRFNHIQSMNTASNIEEIRRYLTPELYTSMYNDIMENQDQDVAE-FSNLNAMVVDSAT 279 N+I +++I+ + + Y + + E + AT Sbjct: 968 NCSDLNYI-------LLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVAT 1020 Query: 280 ENGQYVVSVRFTGNVS 295 N +Y V V++T VS Sbjct: 1021 GNHEYCVEVKYTAGVS 1036
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 2e-12 Identities = 21/76 (27%), Positives = 36/76 (47%) Query: 1 MKVSKTQVKENREKIVEKATQLFRNKGYDGVGIAELMSSAGFTHGGFYKHFTSKTDLVSI 60 + +K + +E R+ I++ A +LF +G + E+ +AG T G Y HF K+DL S Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 TVKHGLEQILKRIEGL 76 + I + Sbjct: 62 IWELSESNIGELELEY 77
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 76.6 bits (188), Expect = 1e-18 Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 2/185 (1%) Query: 7 VLITGASSGIGSVYADRFAQRGHNLILVARDTNRLDKISKDLQEKYGVQVEFIQADLSKD 66 ITGA+ GIG A A +G ++ V + +L+K+ L+ + E AD+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE-ARHAEAFPADVRDS 69 Query: 67 QDISKI-EDVLKNDADIEILVNNAGIALNGNFLTQDIKDIEKLITLNMTAVVRLSHAISQ 125 I +I + + I+ILVN AG+ G + ++ E ++N T V S ++S+ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 126 PLLRKGKGAIINLGSVLGLAPELGSTIYGASKSFIQFFSQGLHLELKDHGVHVQAVLPSA 185 ++ + G+I+ +GS P Y +SK+ F++ L LEL ++ + V P + Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 186 TKTEI 190 T+T++ Sbjct: 190 TETDM 194
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.0 bits (119), Expect = 6e-10 Identities = 20/169 (11%), Positives = 54/169 (31%), Gaps = 10/169 (5%) Query: 7 SPRAIQVVNKSINLFHNHGFHTVGIDRIVKESQIPKATFYHYFHSKERFIEICLTVQKER 66 +++ ++ LF G + + I K + + + Y +F K + + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 LKEKVVSIADYDQGADVMDKIKALYL--LHTDLEGLYYLLFKAIFETKLTYPKAYQIAVR 124 + E + D + ++ + + L + + L I K + + + Sbjct: 70 IGELELEYQA-KFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 125 YRTWLLNEIYSQLIKLKTDA-------TFQDAKLFLYMIEGAIIQLLSS 166 + L E Y ++ + + ++ G I L+ + Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>INTIMIN#Intimin signature. Length = 939 Score = 40.8 bits (95), Expect = 5e-05 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 21/202 (10%) Query: 219 GQIVIHAEAVDAQGNVDVADADVTLTID---TTPQDLITAITVPED---LNGDGILNAAE 272 GQ+V D + A AD T I T ++ + VP ++G +L+A Sbjct: 552 GQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANS 611 Query: 273 LGTDGTFNAQVALGPDAIDGTVVNVNGTNYTVTAADLTNGFIIATLAAA---AADPVT-- 327 T+G+ A V L D VV+ T F+ T A+ AD T Sbjct: 612 ANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAV 671 Query: 328 --GQIVIHAEAVDAQGNVDVADADVTVTLDVTPPDITTTVLAIDPVTADNILDATEAG-- 383 GQ I +G+ V++ +VT T + +T + + T Sbjct: 672 ANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNST-----EKTDTNGYAKVTLTSTT 726 Query: 384 -GTVTLTGTLTNIPTDAATTGV 404 G ++ ++++ D V Sbjct: 727 PGKSLVSARVSDVAVDVKAPEV 748 Score = 35.0 bits (80), Expect = 0.003 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 7/126 (5%) Query: 332 IHAEAVDAQGNVDVADADVTVTLDVTPPDITTTVLAIDPVTADNILDATEAGGTVTLTGT 391 + A A D GN + +V +T+ V + + TAD + +T T T Sbjct: 527 VTARAYDRNGN---SSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 392 LTNIPTDAATTGVVVTVNGVNYVATVDAAAGTWTVDVAGSGLAADTDLTVDATATFTDLA 451 + A V + T +A + + +G A Sbjct: 584 VKKNGVAQANVPVSFNIVS----GTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTA 639 Query: 452 GNSSTL 457 +S L Sbjct: 640 EMTSAL 645
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.2 bits (68), Expect = 0.017 Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 179 YKYTVGQPFIYPRNDLNYAENFLHMM 204 Y T G+P PR + + +M Sbjct: 610 YHVTTGEPVCQPRRPNSRIDKVRYMF 635
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.6 bits (82), Expect = 3e-04 Identities = 55/283 (19%), Positives = 103/283 (36%), Gaps = 21/283 (7%) Query: 10 GLPVGFMTHALPVILRAQGVSLAHIGGFGLLMLPWSI-KIFWAPWVDRHALSRLGHYRSW 68 + +G + LP +LR S +G+L+ +++ + AP + + R G R Sbjct: 18 AVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS-DRFGR-RPV 75 Query: 69 ILPTQFLTVVVLCILSFFPIQALDQPLYLFAFFISLLLMNLTGATQDIATDALAVNLLQH 128 +L + V I++ P L+ +I ++ +TGAT +A +A Sbjct: 76 LLVSLAGAAVDYAIMATAPF--------LWVLYIGRIVAGITGATGAVAGAYIADITDGD 127 Query: 129 DQQHWGNTFQVIGSRLGF-IVGGGAVLWCLDWLTWQPTFLLLAALVFLNTLPVLLFKEPQ 187 ++ F + + GF +V G + + + F AAL LN L Sbjct: 128 ERARH---FGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 188 HNSHSNNEPQLNQQNLAIKIKAYLSYFSQNKELCSWLVVLITFKVADGLAGPLLKPLMVD 247 H + A+ A + + + + V ++ + L D Sbjct: 185 HKGERRPLRRE-----ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGED 239 Query: 248 -MGLSFTQIGVYITMFGAVAALAGAAIAGWMLKYFSRPTALIV 289 T IG+ + FG + +LA A I G + AL++ Sbjct: 240 RFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML 282
>cloacin#Cloacin signature. Length = 551 Score = 27.0 bits (59), Expect = 0.009 Identities = 10/31 (32%), Positives = 15/31 (48%) Query: 7 QDLSRIIEMAWEDRTPFEAIEREYGLSESEV 37 QD + W+ P EA ER Y + +E+ Sbjct: 300 QDEENRRQQEWDATHPVEAAERNYERARAEL 330
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 81.5 bits (201), Expect = 7e-20 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 29/171 (16%) Query: 20 FYKDIRFKNIDSENFADPIILNPLDNCQIIIPKIIWMYWDSEI---PELVKRCFNQVKQL 76 K I F N D II P + K I++ W I P +V++C VK+ Sbjct: 50 IKKSICFFN-------DEIIQEP------MRQKYIFICWLQGIEKAPYIVQQCVASVKKN 96 Query: 77 NPEYQIHILNSDNISEFCDFDFSVYKNL-----TPQQKSDLLRFYLLYYYGGIWLDASII 131 + ++++ I++ +N E+ D + K SD+LR +LL YGG+W+DA++ Sbjct: 97 SGDFKVIIIDGNNYKEWVDIPDFLIKRWQEGKMLDAWFSDILRLFLLCKYGGLWIDATVY 156 Query: 132 TYTNLDWITDVCKKNKTSAFAYYRAANTTVKEYPVIENWLL-ASEKGNIFF 181 + + + + N+ F + + + + I NWL+ K + F Sbjct: 157 MFDKVP--NYIVESNR---FMFQSSFLESETTH--ISNWLIFVKSKNDPFL 200
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 1e-06 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 24/110 (21%) Query: 299 VIQNLVSNALK--FTDVDGSGKVFIEAKQTGENIEITVRDTGLGMTKQQMANLFHPRITA 356 ++Q LV N +K + GK+ ++ + + + V +TG K Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT----------- 307 Query: 357 SFKGTAGEKGAGLGLSLCKRFVEI---NQGKINVSSKEGVGTTFKVLLPS 403 ++ G GL + +++ + +I +S K+G VL+P Sbjct: 308 -------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIPG 349
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 31.9 bits (72), Expect = 0.004 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 88 EDWKTVIQYASTCKLVDNRRIVLWGTSLSGGYALS 122 E W+ VI KL + + G++LS +++ Sbjct: 539 EWWRKVID-ERDVKLSKEINVNISGSTLSPYGSIT 572
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 0.002 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Query: 566 AAPETADVGGDGKIRAPMDGAVIN-ILVNKGDQVVKGQTLLVLEAMKIQQQIRSDVDGVV 624 A G K P++ +++ I+V +G+ V KG LL L A+ +D Sbjct: 85 TANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL----GAEADTLKTQ 140 Query: 625 EDILGQQGQQVKKRQMLFSIQ 645 +L + +Q + + + SI+ Sbjct: 141 SSLLQARLEQTRYQILSRSIE 161
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (268), Expect = 1e-29 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 17/257 (6%) Query: 20 KVIIVTGGGSGIGRCTAHELAALGAQVVITGRKVEKLEKVSQEITEDGGLVHFVVCDNRE 79 K+ +TG GIG A LA+ GA + EKLEKV + + D R+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 80 EEQVKNMIAEVIERFGKLDGLVNNAGGQFPSALENISANGFDAVVRNNLHSTFYLMREAY 139 + + A + G +D LVN AG P + ++S ++A N F R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 140 NQWMAKHGGSIVNMTADMWGGMP--GMGHSGAARSGVDNLTKTASVEWGKSGVRVNAVAP 197 M + GSIV + ++ G+P M ++++ TK +E + +R N V+P Sbjct: 129 KYMMDRRSGSIVTVGSNP-AGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 198 G----------WIVSSGMDNYSGDFAKVIIPSLAGNVPLKRMGTESEVSSAICYLLSDAA 247 G W +G + + + +PLK++ S+++ A+ +L+S A Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLE----TFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 248 AFVSGVTLRIDGAASQG 264 ++ L +DG A+ G Sbjct: 244 GHITMHNLCVDGGATLG 260
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.3 bits (169), Expect = 8e-17 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 1/132 (0%) Query: 20 RGRLLQGAAYLFHKQGYDKTTVRELAQFIGIQSGSLFHHFKSKDDILAHVMEQTIIYNLA 79 R +L A LF +QG T++ E+A+ G+ G+++ HFK K D+ + + E + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 80 RLED-AATQSTDPEQQLRALIKAELISITGDTGAAMAVLVYEWFALSKEKQDYLLKMRNE 138 + A DP LR ++ L S + + + + + + + + Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 139 YEQIWLDVIEKL 150 D IE+ Sbjct: 133 LCLESYDRIEQT 144
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.003 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 80 EVFHPYQGHGYMKAGLKLLLSEAFEKLNLHRLEANIQPENIASIHLVANAGFIKEGFSR 138 V Y+ G A L + A E + L Q NI++ H A FI Sbjct: 96 AVAKDYRKKGVGTALLHKAIEWAKEN-HFCGLMLETQDINISACHFYAKHHFIIGAVDT 153
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 126 bits (318), Expect = 5e-35 Identities = 74/334 (22%), Positives = 121/334 (36%), Gaps = 69/334 (20%) Query: 120 VSLLNDPNVKAVYPNRINQTTTNESLPLINQPQANTNGFTGEGSSVAVIDTGLNYLHSDF 179 V ++ +K + +I P G G VAV+DTG + H D Sbjct: 5 VHIIPYQVIKQEQ----QVNEIPRGVEMIQAPAVWNQT-RGRGVKVAVLDTGCDADHPDL 59 Query: 180 GCTAVNTPSSTCRVVYSFDSAPDDGALDDDGHGSNVSGIVSK---------VATKTKIIG 230 + R D + D +GHG++V+G ++ VA + ++ Sbjct: 60 KARII-----GGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLI 114 Query: 231 IDVFRKVRSQGKWVSTAYDSDILAGINWAVNNAQTYNIKAVNLSLGVPGVKYTSECSDSS 290 I V K + I+ GI +A+ + +++SLG P Sbjct: 115 IKVLNKQ-------GSGQYDWIIQGIYYAIEQ----KVDIISMSLGGPE-------DVPE 156 Query: 291 YGTAFANARAAGVVPVVASGNDAFSDG----ISSPACVAGAVRVGAVYDSNIGGVSWGNP 346 A A A+ ++ + A+GN+ D + P C + VGA Sbjct: 157 LHEAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGA-------------- 202 Query: 347 VKCSDPTTAADKVACFSNGGSLVTLLAPGAMITAGGY-----TMGGTSQATPHVAGAIAL 401 + FSN + V L+APG I + T GTS ATPHVAGA+AL Sbjct: 203 ------INFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMATPHVAGALAL 256 Query: 402 LRA---NSVSPTESIDQTISRLKTTGKPITDSRT 432 ++ S + + ++L P+ +S Sbjct: 257 IKQLANASFERDLTEPELYAQLIKRTIPLGNSPK 290
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 27.2 bits (60), Expect = 0.017 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%) Query: 9 FLEKLASEENLDEWYLSTFIDENIYSLSPTEAFEFSSHVIELLKDEA 55 FL+ +AS NL WY D N+ + E +S +I L + EA Sbjct: 82 FLQHIASLYNL-VWY----YDGNVLYIFKNS--EVASRLIRLQESEA 121
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.5 bits (110), Expect = 9e-09 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 5 EASFRALSVLHAAKDLFNQNGFY-IGIDRIIEEAKIPKATFYNYFHSKERLIQ 56 EA +L A LF+Q G + I + A + + Y +F K L Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 29.3 bits (65), Expect = 0.014 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 14/85 (16%) Query: 57 NNELDANAVRVAAINNISAAKQL-----SYYLYDEFGHDEMFGQDLTKYGYSSDQIISKN 111 N ELD+ +NNI A +L + +Y G E FG LT Y ++I + + Sbjct: 309 NPELDSK------VNNIENALKLTPIPSNLIVYRRSGPQE-FGLTLTSPEYDFNKIENID 361 Query: 112 AFPETW--KLMGYLNFCVEKFGALP 134 AF E W K++ Y NF G++ Sbjct: 362 AFKEKWEGKVITYPNFISTSIGSVN 386
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 52.6 bits (126), Expect = 1e-09 Identities = 73/360 (20%), Positives = 129/360 (35%), Gaps = 44/360 (12%) Query: 55 LPAFSQSFQISPASSSLALSLTTAFLAISIVLSSAFSQAIGRRGVIFSSMLCAAILNIVA 114 LP + F PAS++ + +I + S +G + ++ ++ +++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 115 MFTPNWHSLLI-ARALEGLLLGGVPAVTMAWIAEEIAPEHLGKTMGLYIAGTAFGGMMGR 173 ++ SLLI AR ++G PA+ M +A I E+ GK GL + A G +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 174 VGMGVLIEYFSW---------------------------RTALGLLGAICFICSIAFLNL 206 G++ Y W + + G I I F L Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 207 LP--ASRNFVQKKGLNLDFHIQMWRTHLSNFKLLRLFAIGFLLTSVFVTLFNYATF---- 260 S +F+ L+ ++ R F L + V + T Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 261 ----RLSGAPYSLSQTQI--SLIFLSYSFGMVSSSLAGGLADRFGKKTMMMSGFALMIVG 314 + + LS +I +IF ++ + G L DR G ++ G + V Sbjct: 277 SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336 Query: 315 SL---MTLLTSLFGIIIGIAFITTGFFITHSLTSSSVGAESKQAKAHAS-SLYLLFYYMG 370 L L T+ + + I I F+ G T ++ S+ V + KQ +A A SL ++ Sbjct: 337 FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLS 396
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 42.7 bits (100), Expect = 5e-07 Identities = 60/257 (23%), Positives = 89/257 (34%), Gaps = 34/257 (13%) Query: 1 MTTPANF--NGQRPVIDPDDSVMLLIDHQSGLFQTVAD--MPMTELRARAAALAKIASLS 56 M T ++ N V DP+ +V+L+ D Q+ P+TEL A L Sbjct: 11 MPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQL 70 Query: 57 NIPVITTASVPQ-------------GPNGPLIPE----IHANAPHA-QYVARKGEINAWD 98 IPV+ TA GP P I AP V K +A+ Sbjct: 71 GIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFK 130 Query: 99 NPEFVAAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVVDASGTYSKMAEEITL 158 + ++ GR LII G + A A E K F V DA +S ++ L Sbjct: 131 RTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMAL 190 Query: 159 -------ARVVQAGVVPMDTAAVASEIQKT---WNRDDALEWAQVYTQIFPAYQLLIESY 208 A V + +++QKT + + + QI Q E Sbjct: 191 EYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIAELLQETPEDI 250 Query: 209 TKAQEVIKNSEVLDSAR 225 T ++++ LDS R Sbjct: 251 TDQEDLLDRG--LDSVR 265
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.6 bits (66), Expect = 0.006 Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 9 AKGLNRERQRAGLSLAEVARRAGVAKSTL 37 A L ++ + SL E+A+ AGV + + Sbjct: 20 ALRLFSQQGVSSTSLGEIAKAAGVTRGAI 48
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 31.4 bits (71), Expect = 0.008 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 11/140 (7%) Query: 175 NDLVESEEICNKLGIKLLKIEIEPNDLIKDLNIKKHIIPNY----------PASYLAFIG 224 DL ++ + L + E DL + I + + N+ Y FI Sbjct: 707 TDLSKASIPPDTLKLIRETTEKTFIDLSNESQISMNRVDNFLNKASICVFVEDIYPKFIS 766 Query: 225 FIEKYIKNLNTYFKSEDYCIINGTGGDQIFLEALPLKSVLNFNFLQIKN-FCDLNAINYI 283 ++EKYI N+N + N ++ L ++F FL I++ N+ Sbjct: 767 YMEKYINNINIKTREFIQRCTNINDNEKSILINSYTFKTIDFKFLDIQSIKNFFNSQVEQ 826 Query: 284 DILKYISSMKLKKINFNEKN 303 + + +S +L N Sbjct: 827 VMKEILSPYQLLLFASKGPN 846
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.0 bits (109), Expect = 2e-07 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 2/157 (1%) Query: 32 LPNIANDLGISIPTAGMLITGYALGVMLGAPFMTLWFGGFARRNALIFLMAIFTVGNLIA 91 LP+IAND + + T + L +G + L+F + I G++I Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 92 AFSPSYMSLL-GARLITSLNHGAFFGIGSVVAASIVPAHKQASAVATMFMGLTIANIGGV 150 S+ SLL AR I AF + VV A +P + A + + + G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 151 PLATWVGQNIGWRMSFLAISLLGVITMLALWKALPQG 187 + + I W L I ++ +IT+ L K L + Sbjct: 157 AIGGMIAHYIHWSYLLL-IPMITIITVPFLMKLLKKE 192
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.4 bits (76), Expect = 9e-04 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 367 RSAEIACVAVHPSYRKSNRGSQILQFLEEKAKEQGIHQLFVLTTR----TAHWFLEHGFH 422 A I +AV YRK G+ +L E AKE L + T H++ +H F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 423 QVSVDE-----LPNAR-QALYNYQR 441 +VD P A A++ Y + Sbjct: 148 IGAVDTMLYSNFPTANEIAIFWYYK 172
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.6 bits (219), Expect = 4e-23 Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 6/203 (2%) Query: 13 LKDRIILITGAGDGIGRAAALTYALHGATVVLHGRTLNKLEVIYDEIESLGAPQPAILPL 72 ++ +I ITGA GIG A A T A GA + KLE + A P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKV-VSSLKAEARHAEAFPA 64 Query: 73 QLSSASDRDYDFLVDTLEKQFGRLDGILHNAGILGERVELAH-YPTETWDDVMAVNLRAP 131 + ++ D + +E++ G +D +++ AG+L R L H E W+ +VN Sbjct: 65 DVRDSAA--IDEITARIEREMGPIDILVNVAGVL--RPGLIHSLSDEEWEATFSVNSTGV 120 Query: 132 FALTQALLPLLQKSENASVVFTSSGVGREARALWGAYSVSKIAIEAVSKIFAAENTYPNI 191 F ++++ + + S+V S R AY+ SK A +K E NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 192 RFNCINPGATRTAMRAKAYPQED 214 R N ++PG+T T M+ + E+ Sbjct: 181 RCNIVSPGSTETDMQWSLWADEN 203
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 28.6 bits (64), Expect = 0.018 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%) Query: 63 EPHMQTWLKQIPKDVRFVRTPAAMNKMWEQGARTYYTSEALGVRKRTHL 111 E + +P D R TPA+M R TS+ L R + L Sbjct: 162 ETELNEA---LPGDARDTTTPASMAATL----RKLLTSQRLSARSQRQL 203
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 4e-12 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 12 RKEKILSVAEKLLLENN-QEITLDELVAELDIAKGTLYKHFRSKNELLLELIIQNEKQIL 70 ++ IL VA +L + +L E+ + +G +Y HF+ K++L E+ +E I Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 71 EI 72 E+ Sbjct: 72 EL 73
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.5 bits (128), Expect = 6e-11 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 6 ERKQQSRQALLDAALHLSTSGRSFSSISLREVAREVGLVPTAFYRHFQDMDELGKELVDQ 65 + Q++RQ +LD AL L S + SS SL E+A+ G+ A Y HF+D +L E+ + Sbjct: 7 QEAQETRQHILDVALRL-FSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 66 VALHLKSVLHQL 77 ++ + + Sbjct: 66 SESNIGELELEY 77
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 30.4 bits (68), Expect = 0.004 Identities = 10/45 (22%), Positives = 16/45 (35%) Query: 58 VNALISAYDNTVQVTWLKQEGERVAANEAFLKLAGSARSLLTVER 102 +N + A + T + ER KL+ L+ V R Sbjct: 85 INQIAKAANRTHDPAYHSFMAERKVLGLELSKLSAVLAPLMEVSR 129
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.6 bits (69), Expect = 0.017 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 41/167 (24%) Query: 215 IPPKVDFKHEGVERILKL---MLPALFGVSVTQINLLLNTIWASFMQDGSVSWLYSAERM 271 +P + + G+ +L PAL +S + L L ++ S+ SV M Sbjct: 850 LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV--------M 901 Query: 272 TELPLGLIGVAIGTVILPSLSARHAEQDQAKFRGMIDWAAKI--IVLVGLPASIALFMLS 329 +PLG++GV + + D + + +GL A A+ ++ Sbjct: 902 LVVPLGIVGVLLAATLFNQ---------------KNDVYFMVGLLTTIGLSAKNAILIVE 946 Query: 330 ----------TPIIQALFQRGEFDLRDTQMTALALQCMSAGVISFML 366 +++A LR MT+LA GV+ + Sbjct: 947 FAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLA---FILGVLPLAI 990
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 181 bits (460), Expect = 3e-59 Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 11 IIATSTMSLSV---LAATPITNKSPAKEQFSYSYGYLMGRNNTDALTDLNLDTFYQGLQE 67 ++ + M L++ +AAT T+ + K++ SYS G +G+N + D+N D +G+Q+ Sbjct: 5 LVTAAIMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQD 64 Query: 68 GAQSKTARLTDEEMAKAINDYKKTLEAKQLVEFQKTGQQNAQAGTAFLADNAKKSGVITT 127 G LT+E+M ++ ++K L AK+ EF K ++N G AFL+ N K G++ Sbjct: 65 GMSGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVL 124 Query: 128 KSGLQYQVLKEGNGQKPKATSRVKVNYEGRLLDGTVFDSSIARNHPVEFQLSQVITGWTE 187 SGLQY+++ G G KP + V V Y G L+DGTVFDS+ P FQ+SQVI GWTE Sbjct: 125 PSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTE 184 Query: 188 GLQTMKEGGKTRFFIPANLAYGEVGAGDSIGPNSTLIFDIELLQV 232 LQ M G F+PA+LAYG G IGPN TLIF I L+ V Sbjct: 185 ALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 150 bits (381), Expect = 3e-47 Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 9/218 (4%) Query: 29 TTEVGSKANKNATPIEKISYVLGYEVAQQTPP---ELDTKSFVKGIHDARSKQPSAYTQE 85 T + A T +K+SY +G ++ + +++ KG+ D S T+E Sbjct: 17 TAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEE 76 Query: 86 ELKAAVTAYEKELQQKMQQQ-NKPEQAAGVAPESADAQFLAENKTKAGVKTTASGLQYII 144 ++K ++ ++K+L K + NK + ++ FL+ NK+K G+ SGLQY I Sbjct: 77 QMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDA----FLSANKSKPGIVVLPSGLQYKI 132 Query: 145 TKEGTGKQPTAQSMVKVHYEGRLINGQVFDSSYKRGEPVEFPLNQVIPGWTEGLQLMKEG 204 GTG +P V V Y G LI+G VFDS+ K G+P F ++QVIPGWTE LQLM G Sbjct: 133 IDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAG 192 Query: 205 GKATFFIPSNLAYGPQEVPG-IPANSTLIFDVELISVK 241 F+P++LAYGP+ V G I N TLIF + LISVK Sbjct: 193 STWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.040 Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 14/143 (9%) Query: 266 QNIERRSAESAQTLKFLDEQLPDLKKQLDDAERQFNKFRQQYNTVDVTKESELYLTQSIT 325 + + + L + + +++ E + + + + Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS-------------S 242 Query: 326 LETKKAELEQKQAEMAAKYTADHPAMREINGQLGAINKQIGELNSTLKQLP-DVQRQYLQ 384 L K+A + E KY +R QL I +I + + + + L Sbjct: 243 LLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD 302 Query: 385 LYREVEVKTQLYTALLNSYQQLR 407 R+ L T L ++ + Sbjct: 303 KLRQTTDNIGLLTLELAKNEERQ 325
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 28.3 bits (63), Expect = 0.037 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 159 GDALSVGVSYS-DDYWGHSDEFWYFNLGYSVPIADTGFT 196 G ++ +S S YWG S+ F G + D +T Sbjct: 538 GRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 576
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 35/162 (21%), Positives = 54/162 (33%), Gaps = 50/162 (30%) Query: 201 RRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLTNQETLEVASIYSISNTSHTFG 260 R L +L+ G GTGK L+A L H +G Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARAL-------------------------HDYG 184 Query: 261 QR---PFRAPHHTA-----SAIALVG-------GGSHPKPGEITLSHLGVLFLDEL---- 301 +R PF A + A L G G G + G LFLDE+ Sbjct: 185 KRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMP 244 Query: 302 PEFDRKVLEVLRQPLESKEIIISRAARQITYPANFQLIAAMN 343 + ++L V L+ E + + ++ +++AA N Sbjct: 245 MDAQTRLLRV----LQQGE--YTTVGGRTPIRSDVRIVAATN 280
>cloacin#Cloacin signature. Length = 551 Score = 28.9 bits (64), Expect = 0.001 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Query: 16 PKKDLEKNL---RALLNEAVEKLDLVSRQEIDRQKTALQSANQRLAELQKQVELLEETLK 72 P + E+N RA LN+A E D+ QE RQ A+Q N R +EL + L + + Sbjct: 315 PVEAAERNYERARAELNQANE--DVARNQE--RQAKAVQVYNSRKSELDAANKTLADAIA 370 Query: 73 NKK 75 K Sbjct: 371 EIK 373
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 34.4 bits (79), Expect = 8e-04 Identities = 29/201 (14%), Positives = 66/201 (32%), Gaps = 22/201 (10%) Query: 257 LTLTVVGASLLWVGWFGFNGGSALGAGARASMAILVTQVAAAAAAFSWLVVERMIRGKAS 316 + + A L+ + + F S L + A + +++E Sbjct: 33 ALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ--SYLPFSQALSYVVDNVLLEFFYLCFPL 90 Query: 317 VLGGASGAVAGLVVITPAAGFVGVGGAL-----VMGLIGGVVCFWGITALKRLLKADDAL 371 + A A+A VV GF+ G A+ + I G + I +L LK+ Sbjct: 91 LTVAALMAIASHVVQY---GFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKS---- 143 Query: 372 DAFGLHAVGGIVGAILTGVFYSDEIIKAANVTLAPTFAGQLWVQVEGVLATMVYSGVATF 431 + + ++ I+ G +++ + + + +L ++ F Sbjct: 144 -ILKVVLLSILIWIIIKGNLV--TLLQLPTCGIE-----CITPLLGQILRQLMVICTVGF 195 Query: 432 VILKVIDLVIGIRVNADDERM 452 V++ + D + +M Sbjct: 196 VVISIADYAFEYYQYIKELKM 216
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 62.7 bits (152), Expect = 1e-13 Identities = 61/277 (22%), Positives = 98/277 (35%), Gaps = 39/277 (14%) Query: 19 LSVVVFAFLILWLCWKLASLFWWVIAP---PQMMQFDRVELGSQQPQIPNIST-FSIFNE 74 + ++F L+L C +LA +FW + P P QQP N T F + E Sbjct: 14 IRRILFYLLMLLFCQQLAMIFWRIGLPDNAPVSSVQITPAQARQQPVTLNDFTLFGVSPE 73 Query: 75 P----------SANAAQENVNLELQGVMVGYPNRFSSAVIKLDNTADRYRVGETIGSTSY 124 +N +NL L GVM G + S A+I DN V E + + Sbjct: 74 KNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKDNEQFSRGVNEEVPGYNA 133 Query: 125 QLAEVYWDHVIL-RQGNGSTRELQFKGLPNGLYQPMTPDASQPAATASQPSAPVNTTQEA 183 ++ + D V+L QG GLY + P E Sbjct: 134 KIVSIRPDRVVLQYQGRYEVL---------GLYS---------QEDSGSDGVPGAQVNEQ 175 Query: 184 LGQ-AIQQMQGNREQYLRDMGVS-GNSSEGFEVTERTPTALRNKLGLRPGDRIVSLNGQT 241 L Q A M Y+ + N +G+ + + ++GL+ D V+LNG Sbjct: 176 LQQRASTTMS----DYVSFSPIMNDNKLQGYRLNPGPKSDSFYRVGLQDNDMAVALNGLD 231 Query: 242 VGQGQTDVQLLEQARRAGQVKIEIKRGDQVMTIQQNF 278 + + + +E+ + ++R Q I F Sbjct: 232 LRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 428 bits (1102), Expect = e-143 Identities = 228/705 (32%), Positives = 347/705 (49%), Gaps = 81/705 (11%) Query: 12 ALLAAAPLIATVSSSVYAQTWKINLRDADLTAFINEVADITGKNFAVDPRVRGNVTVISN 71 LL A L+ +++ + + + + D+ FIN V+ K +DP VRG +TV S Sbjct: 13 TLLIFAALLFRPAAA---EEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSY 69 Query: 72 KPLNKDEVYDLFLGVLNVNGVVAIPSGN-TIKLVPDSNVKNSGIPYDSR-NRLRGDQIVT 129 LN+++ Y FL VL+V G I N +K+V + K + +P S GD++VT Sbjct: 70 DMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVT 129 Query: 130 RVIWLENTNPNDLIPALRPLMPQFAHMAAI--AGTNALIVSDRAANIYQLENIIRNLDGT 187 RV+ L N DL P LR L + + +N L+++ RAA I +L I+ +D Sbjct: 130 RVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNA 189 Query: 188 GQNDIEAISLQSSQAEEIITQLEAMSATGASKDFSGARI-RIIADNRTNRILVKGDPETR 246 G + + L + A +++ + ++ + G+ + ++AD RTN +LV G+P +R Sbjct: 190 GDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR 249 Query: 247 KRIRHMIEMLDVPSADRLGGLKVFRLKYASAKNLSEILQGLVTGQAVSSSNSNNNSSNSS 306 +RI MI+ LD A G KV LKYA A +L E+L G+ Sbjct: 250 QRIIAMIKQLDRQQA-TQGNTKVIYLKYAKASDLVEVLTGI------------------- 289 Query: 307 NPINNLMGNNQNSSSNTSGSNGSSISTPSINLNGNSNNNNQNSISSFSQNGVSIIADNAQ 366 + S + + + I A Sbjct: 290 ---------SSTMQSEKQAAKPVAAL----------------------DKNIIIKAHGQT 318 Query: 367 NSLVVKADPQLMREIESAIQQLDVRRQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIG 426 N+L+V A P +M ++E I QLD+RR QVL+EA I EV D LGIQWA + G Sbjct: 319 NALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA----NKNAG 374 Query: 427 LLSFSNVGASLSSIAAG---YLSGGSAGAASAIAGGANKGNGATFAVGNFENSRKAYGAL 483 + F+N G +S+ AG Y G+ ++ A A + G A F GN+ L Sbjct: 375 MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNW-------AML 427 Query: 484 IQALKANTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVG 543 + AL ++TK+++L+TPSIVT+DN EA VGQ VP +TGS TT+ N + TVERK VG Sbjct: 428 LTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGD--NIFNTVERKTVG 485 Query: 544 VTLKVVPHIGEGGTVRLEVEQEVSNVQTSKGQAA---DLITNKRAIKTAVLAEHGQTVVL 600 + LKV P I EG +V LE+EQEVS+V + + N R + AVL G+TVV+ Sbjct: 486 IKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVV 545 Query: 601 GGLVSDDVELSRQGIPGLSSIPYLGRLFRSDSRSNTKRNLLVFIHPTIVGDANDVRRLSQ 660 GGL+ V + +P L IP +G LFRS S+ +KRNL++FI PT++ D ++ R+ S Sbjct: 546 GGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASS 605 Query: 661 QRYNQLYSLQL-AMDQNGNFAKLPEQVDDVYNQK--MTLPSVTSQ 702 +Y Q + N A L + + ++Y ++ V++ Sbjct: 606 GQYTAFNDAQSKQRGKENNDAMLNQDLLEIYPRQDTAAFRQVSAA 650
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 77.2 bits (190), Expect = 2e-17 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 13 VNVGTIGHVDHGKTTLTAAI--ATICAKTYGGEAKDYSQIDSAPEEKARGITINTSHVEY 70 +N+G + HVD GKTTLT ++ + G K ++ D+ E+ RGITI T + Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 DSPIRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPMPQTREHILLSRQVGVPY 130 +D PGH D++ + + +DGAIL+ +A DG QTR R++G+P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122 Query: 131 IIVFLNKCDLVDDEELLELVEMEVRELLS 159 I F+NK D + L V +++E LS Sbjct: 123 TIFFINKIDQNGID--LSTVYQDIKEKLS 149
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 80.3 bits (198), Expect = 2e-22 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 21 SAEVVRSGSPLDIVLWVIAIALLILAVMANQYLPAHWAPANNIWVRVGAIFACIVVALGL 80 + E SG L+ + WV+ +ALL++A++ N P +R A+ I A G+ Sbjct: 4 NTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLP-----LRALAVVILIAAAGGV 58 Query: 81 LYATHQGKGFVRLLKDARVELRRVTWPTKQETVTTSWQVLLVVVVASLVLWCFDYGLGWL 140 T +GK V ++AR E+R+V WPT+QET+ T+ V V V SL+LW D L L Sbjct: 59 ALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRL 118 Query: 141 IKLIIG 146 + I G Sbjct: 119 VSFITG 124
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.028 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 173 LHQAALDAQATRLQRIGTLEHQIEELEEVVQTDYKEIEQEFDRLSHHEHIMQDCSYSLNV 232 A T LE + ELE+ ++ + ++ E Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 233 LDEAEQNITQEMSSIIRRLESHAGRSDQLSEIYNSLLNAQSEIDDATANLRQFIDRQSFD 292 L+ Q + S+ R L++ QL + L + + +LR+ +D Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREA 359 Query: 293 PERMEELNSKLEVFHRLARKYRT----QPETLKEEYEAWQHELEQLH-QLEDPETLAEQV 347 +++E + KLE ++++ R + +E + + LE+ + +L E L +++ Sbjct: 360 KKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKEL 419 Query: 348 EKSHEEFLEKAQHLDNIRREAAAPLAKQLTEQVKPLALPEA 388 E+S + ++ L A L ++L +Q + LA A Sbjct: 420 EESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRA 460
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 78.7 bits (194), Expect = 4e-17 Identities = 77/393 (19%), Positives = 130/393 (33%), Gaps = 107/393 (27%) Query: 406 IMGHVDHGKTSLLDRIRRSKVAAGEAG------------------GITQHIGAYHVETDK 447 ++ HVD GKT+L + + + A E G GIT G + + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 448 GIITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTAEAIDHARAAGTPIIVAI 507 + +DTPGH F + R D +L+++A DGV QT R G P I I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 508 NKMDKESADVDRVLNEL---------------------TTKQIVPEEW------------ 534 NK+D+ D+ V ++ T E+W Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 535 -----------------------GGDVPIAKVSAHSGQGIDELLDLILIQSELMELKASA 571 P+ SA + GID L+++I ++ Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVIT--NKFYSSTHRG 245 Query: 572 EGAAQGVVIEARVDKGRGAVTSILVQNGTLNIGDLVL-AGSSYGRVRAM-SDENGKPIKS 629 + G V + + R + I + +G L++ D V + ++ M + NG+ K Sbjct: 246 QSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKI 305 Query: 630 AGPSIPVEILGLPDAPMAGDEVLVVNDEKKAREVADARADRERQKRIDRQSAMRLENIMS 689 D +G+ V++ N+ K V +++RI+ Sbjct: 306 -------------DKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPL--------- 343 Query: 690 SMGKKDVPTVNVVLRTDVRGTLEALNAALHELS 722 P + + E L AL E+S Sbjct: 344 -------PLLQTTVEPSKPQQREMLLDALLEIS 369
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 416 bits (1071), Expect = e-146 Identities = 191/406 (47%), Positives = 269/406 (66%), Gaps = 5/406 (1%) Query: 1 MPAYQFTAIDASGKQQKGVLEGDSARQIRQQLRDKAWTPISVDPVEQKDKH-QSQGLFQ- 58 M Y + A+DA GK+ +G E DSARQ RQ LR++ P+SVD + S GL Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 59 --KKFSAYDLALMTRQLSVLVAAAIPLEEALRAVSKQSEKAHVQNLLSSVRSRVMEGHSL 116 + S DLAL+TRQL+ LVAA++PLEEAL AV+KQSEK H+ L+++VRS+VMEGHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 117 AQGMQ-QSGRFPDLYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKVQGAMIYPIILM 175 A M+ G F LY A VAAGE SGHLD +L++L+DYTE R M+ ++Q AMIYP +L Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 176 LMSFAIVMGLMTFVVPEIVKTFDQNKDALPWITVALMKASDFIRHAWVFIIIFAVVGIVA 235 +++ A+V L++ VVP++V+ F K ALP T LM SD +R ++++ + G +A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 236 FVRFLKTTAGHYAFDRLTLKLPLFGKLSRGINSARFASTLSILTRSGVPLVDALKIGAAV 295 F L+ +F R L LPL G+++RG+N+AR+A TLSIL S VPL+ A++I V Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 296 TNNWVIRDSIAHAAERVTEGGNLGTQLERSGYFPPMMVQMIRSGEASGELDRMLERASTM 355 +N R ++ A + V EG +L LE++ FPPMM MI SGE SGELD MLERA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 356 QDREVTTFISTLLALLEPLMLVLMASIVLVIVIAVMLPIVNMNNMI 401 QDRE ++ ++ L L EPL++V MA++VL IV+A++ PI+ +N ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 156 bits (395), Expect = 3e-51 Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 6/135 (4%) Query: 56 RMKRASGFTLIEVMVVIVILGVLAALIVPNVMGRSEKAKIDTTQITLKGVAGALDQYKLD 115 + GFTL+E+MVVIVI+GVLA+L+VPN+MG EKA + + ALD YKLD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 116 NGHFPTMQEGGLDALVNQPATA---KNWMPGGYVKGGYPKDSWKNDVQYVIPGADSRAFD 172 N H+PT + GL++LV P N+ GY+K P D W ND V PG + A+D Sbjct: 63 NHHYPTTNQ-GLESLVEAPTLPPLAANYNKEGYIK-RLPADPWGNDYVLVNPG-EHGAYD 119 Query: 173 LYSFGADGKEGGEGN 187 L S G DG+ G E + Sbjct: 120 LLSAGPDGEMGTEDD 134
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.4 bits (61), Expect = 0.006 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 2 QNSKSLFSFKKLPNRYTSIVLPFLLSIIMTFVV-SMISTLRSLGLEEFSIYVWMSAWAIS 60 + +K +FS K L SI+ LLSI++ ++ + TL L + + Sbjct: 126 EGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILR 185 Query: 61 WLIAFPTLLFIL 72 L+ T+ F++ Sbjct: 186 QLMVICTVGFVV 197
>PF01206#SirA family protein Length = 76 Score = 78.6 bits (194), Expect = 2e-23 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Query: 11 QINTRGLRCPEPVMMLHQAIRKSKSGDVVEVFATDNSTSWDIPKFCMHLGHELLLQEERL 70 ++ GL CP P++ + + +G+V+ V ATD + D F GHELL Q+E Sbjct: 7 SLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKEED 66 Query: 71 DENGHKEFHYLVKKG 85 +H+ +K+ Sbjct: 67 G-----TYHFRLKRA 76
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.7 bits (116), Expect = 2e-08 Identities = 62/396 (15%), Positives = 127/396 (32%), Gaps = 31/396 (7%) Query: 34 ALLFAYFAMVVDGIDIMLLSYSLTSLKAEFGLSTFQAGALGSA----SLAGMGVGGILGG 89 L+ + +D + I L+ L L + S G +L +LG Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 90 WACDKFGRVRTIANSVTFFSVATCLLGFTQSFEQFMALRFIGALGIGALYMACNTLMAEY 149 + D+FGR + S+ +V ++ R + + GA +A+ Sbjct: 66 LS-DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADI 123 Query: 150 VPTTYRTTVLGTLQTGQTVGYIAATLLAGAIIPDHGWRVLFFLTVVPAFVNIFLQRFVPE 209 R G + G +A +L G + F + + +PE Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 210 PKSWQLTKIESLQGNRQPKEIVATEKPKSSSIYKQIFNNFKHRKMFLLWMTTAFFLQ-FG 268 +G R+P A P +S + + + M F +Q G Sbjct: 184 SH----------KGERRPLRREA-LNPLASFRWARGM------TVVAALMAVFFIMQLVG 226 Query: 269 YYGINNWMPSYLETEVHMNFKNLTGYMVGSYTAM--ILGKILAGYLADKFNRRAVFVFGT 326 W+ + E H + + G + ++ + + ++ G +A + R + G Sbjct: 227 QVPAALWV-IFGEDRFHWDATTI-GISLAAFGILHSLAQAMITGPVAARLGERRALMLGM 284 Query: 327 IASAVFLPIIIFFNTPDNILYLLITFGFLYGIPYGVNATYMAESFSTDVRGTAIGGAYNI 386 IA ++ F +++ GI ++ + +G G + Sbjct: 285 IADGTGYILLAFATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAAL 343 Query: 387 GRVGAAIAPATIGFL--ASGGTFTMAFIVMGAAYFV 420 + + + P + AS T+ + GAA ++ Sbjct: 344 TSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYL 379
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 1e-13 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 7 KILDTAEKLFNENSFVGVGVDLIRDESGCSKTTMYTYYKNKNQLVQSVLIARDERFKQSL 66 ILD A +LF++ + I +G ++ +Y ++K+K+ L + + + Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 67 LGYVGDATG------LEAINKILDWHTNWFRQDFFKGCLFVRAVAE 106 L Y G E + +L+ R+ +F + Sbjct: 75 LEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.023 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 305 DRGFIFLLLIVSASGLALMAFRNTPYMALLLIFHLATVMTFFITMP 350 +R + L +I +G L+AF +MA ++ LA + I MP Sbjct: 276 ERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA---SGGIGMP 318
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 28.2 bits (63), Expect = 0.038 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 55 MGASPTAIPNRLDRGEHFDVVVLAAPELNKLAEKGYVDPNSQSALVNSSIGMAVPKGAP- 113 G +P AI L + +DV V + L E G+V+ ++ +A+ +I +GA Sbjct: 224 WGTTPAAIDCCLSVADEYDVQV--MIHTDTLNESGFVE-DTIAAIKGRTIHAYHTEGAGG 280 Query: 114 --KPDISSAAKFEKVL 127 PDI V+ Sbjct: 281 GHAPDIIRICGQPNVI 296
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 9e-05 Identities = 68/356 (19%), Positives = 129/356 (36%), Gaps = 46/356 (12%) Query: 64 LMRPLGAIFLGAYVDRVGRRKGLIVTLSLMAIGTILITFVPGYETIGIIAPILVVIGRLL 123 LM+ A LGA DR GRR L+V+L+ A+ ++ P ++ IGR++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 124 QGFSAGVESGGVSIYLAEIATDKNRGFITSWQSGSQQIAVVFAALLGYWLNTILTHAQVG 183 G + G Y+A+I R + S +V +LG + G Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM---------G 155 Query: 184 EWGWRIPFLI-----GCLIIPLIFLFRRTLEETEDFKAQKTHPSTKEIFSTLASNWRIVL 238 + PF G + FL + + P +E + LAS +R Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPES-------HKGERRPLRREALNPLAS-FRWAR 207 Query: 239 AGMMMSAMTTTTF-------YFITVYTTVYAKRTLEMSVTDSLLATVFVGLSNFFWLPMG 291 +++A+ F ++ R + T + F L + + Sbjct: 208 GMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMIT 267 Query: 292 GLLSDKIG-RRPVLVGITTLAIFTTYPVLSWLVSDISFTNLIITLAYFSFFFGLYNGTMV 350 G ++ ++G RR +++G+ +A T Y +L++ +++ LA + Sbjct: 268 GPVAARLGERRALMLGM--IADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLS 325 Query: 351 ATLAEVMPKRVRTVGFSLAFSLAAAIFGGMTPIACTYLVEHTGNASTPAFWLMLAA 406 + E +++ G A + +I G P+ T + + W+ AA Sbjct: 326 RQVDEERQGQLQ--GSLAALTSLTSIVG---PLLFTAIYAASITTWNGWAWIAGAA 376
>INTIMIN#Intimin signature. Length = 939 Score = 33.5 bits (76), Expect = 0.002 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%) Query: 353 VRYDDDQWTLNLGVGQR-FSPKWLGSVSVGWDSGAGDKVSTGGPTKGYYNLGIGAQY 408 RY D ++T NLG GQR F P+ + +V D + LGIG +Y Sbjct: 248 ARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDF---------SGDNTRLGIGGEY 295
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 61.2 bits (148), Expect = 1e-11 Identities = 62/383 (16%), Positives = 137/383 (35%), Gaps = 10/383 (2%) Query: 155 AKPEEMRIFIEEAAGVSRYQARRRETLQHLEHTEQNLSRLEDIALELKSQLKTLKRQSEA 214 ++ + + E A + L + L D E S K R+++ Sbjct: 47 SQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDK 106 Query: 215 AVQYKTLEGQIRTLKIEILSFQADKSVRLQEEYTIQMNELGETFKLVRSELSTIEHDLEA 274 ++ K + Q + L + ++ + ++ L + + + +E LE Sbjct: 107 SLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEG 166 Query: 275 TSALFQRLIQQSSPLQHEWQQAEKKLSELKMTLEQKQSLYQQNSTTLVQLEQQRFQTKER 334 + L+ E E + +EL+ LE + +S + LE ++ R Sbjct: 167 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAAR 226 Query: 335 LQLSELQLETLNNQLDEQTEALTAIEHTATEAEQNFADLQSQQKQAQQQFEQVKAQVEKQ 394 E LE N + + +E E A+L+ + A A+++ Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 395 QQQKMQMSAQIEQLG--KNVLRIEQQKETLQHQASQIQSHVHEDEQGELEQLQQQLHREI 452 + +K + A+ L VL +Q AS + + +LE Q+L + Sbjct: 287 EAEKAALEAEKADLEHQSQVLNANRQSLRRDLDAS-------REAKKQLEAEHQKLEEQN 339 Query: 453 ATLETEIEQLSQRLEQSQQQHQASKNQQQTLKTEIQVLLSEQKNLS-QLVAKQSPKQHQD 511 E + L + L+ S++ + + + Q L+ + ++ + +++L L A + K+ + Sbjct: 340 KISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVE 399 Query: 512 ALRLMQALQLTEQGKPHAQIIEK 534 +L K + ++ E Sbjct: 400 KALEEANSKLAALEKLNKELEES 422 Score = 58.2 bits (140), Expect = 1e-10 Identities = 46/300 (15%), Positives = 109/300 (36%), Gaps = 8/300 (2%) Query: 646 RLDEIEQVLEKQQPELQALDQVLVQQKDELGQLQSDVQQKQQVVKQKQKDLQQLDVQIAK 705 ++ ++ EL + L + L + S +Q+ + +K L+ Sbjct: 79 NNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTA 138 Query: 706 QQTAAQAFLLQKQQLKDQLSQLDMQLEEDAMQKDDLEIDLHALAIKLETILPDYKTLQFR 765 + +K L + + L+ LE A + K++T+ + L+ R Sbjct: 139 DSAKIKTLEAEKAALAARKADLEKALEG-------AMNFSTADSAKIKTLEAEKAALEAR 191 Query: 766 VEELIEQLEEQQQALHQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQINAQMEQA 825 EL + LE + + L + LEK + + +A+++ Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 826 KKFVDPIQLELPNLESEFQQQFAQTEKLQKNWNEWQLELNSVQEKQQTLTDQRHQYQQKD 885 + ++ LE + + + E +++ ++ L Q Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 886 EQLREQLEAKRLAWQAAKSDREHYQEQLKELNAEFQKGLQIDLTEHQQKLEKVQKQFEKI 945 + LR L+A R A + +++ + +EQ K A + L+ DL ++ ++++ + +K+ Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR-QSLRRDLDASREAKKQLEAEHQKL 370 Score = 45.1 bits (106), Expect = 1e-06 Identities = 33/253 (13%), Positives = 83/253 (32%), Gaps = 1/253 (0%) Query: 742 EIDLHALAIKLETILPDYKTLQFRVEELIEQLEEQQQALHQQQQEREILRRNSTQTTQQI 801 L + + + + TL+ + +L + + + +E + + + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 802 ELLEKDISFLQSQYQQINAQMEQAKKFVDPIQLELPNLESEFQQQFAQTEKLQKNWNEWQ 861 I L+++ + +E A F ++ LE+E A+ L+K Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 862 LELNSVQEKQQTLTDQRHQYQQKDEQLREQLEAKRLAWQAAKSDREHYQEQLKELNAEFQ 921 + K +TL ++ + + +L + LE A + + + + L A Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 922 KGLQIDLTEHQQKLEKVQKQFEKIGAVNLAASQEFEEVSQRFDELRHQIQDLENTVTQLK 981 L+ L + + + A A E+ + + + + L+ Sbjct: 229 D-LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 287 Query: 982 DAMKSIDQETRKL 994 +++ E L Sbjct: 288 AEKAALEAEKADL 300 Score = 40.0 bits (93), Expect = 6e-05 Identities = 39/291 (13%), Positives = 96/291 (32%), Gaps = 4/291 (1%) Query: 630 YDDESQSAQGMLSHRIRLDEIEQVLEKQQPELQALDQVLVQQKDELGQLQSDVQQKQQVV 689 D ++ +G ++ + LE ++ L A L + + + K + + Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 690 KQKQKDLQQLDVQIAKQQTAAQAFLLQKQQLKDQLSQLDMQLEEDAMQKDDLEIDLHALA 749 + ++ L+ ++ K A F L L + + Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 750 IKLETILPDYKTLQFRVEELIEQLEEQ----QQALHQQQQEREILRRNSTQTTQQIELLE 805 + + + +E +LE+ + + L + LE Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 806 KDISFLQSQYQQINAQMEQAKKFVDPIQLELPNLESEFQQQFAQTEKLQKNWNEWQLELN 865 L + Q + ++ +++ ++ E LE + + A + L+++ + + Sbjct: 302 HQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 361 Query: 866 SVQEKQQTLTDQRHQYQQKDEQLREQLEAKRLAWQAAKSDREHYQEQLKEL 916 ++ + Q L +Q + + LR L+A R A + + E +L L Sbjct: 362 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAAL 412 Score = 34.7 bits (79), Expect = 0.002 Identities = 46/312 (14%), Positives = 119/312 (38%), Gaps = 11/312 (3%) Query: 644 RIRLDEIEQVLEKQQPELQALDQVLVQQKDELGQLQSDVQQKQQVVKQKQKDLQQLDVQI 703 ++ + E AL+ + + L + +K + + L + Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Query: 704 AKQQTAAQAFLLQKQQLKDQLSQLDMQLEEDAMQKDDLEIDLHALAIKLETILPDYKTLQ 763 A + A + + ++ L+ + ++ +LE L KTL+ Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 287 Query: 764 FRVEELIEQLEEQQQALHQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQINAQME 823 + + + + ++L N + ++ + L++++Q++ Q + Sbjct: 288 -------AEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 824 QAKKFVDPIQLELPNLESEFQQQFAQTEKLQKNWNEWQLELNSVQEKQQTLTDQRHQYQQ 883 ++ ++ +L +Q A+ +KL++ + ++ S Q ++ L R +Q Sbjct: 341 ISEASRQSLRRDLDASREAKKQLEAEHQKLEE---QNKISEASRQSLRRDLDASREAKKQ 397 Query: 884 KDEQLREQLEAKRLAWQAAKSDREHYQEQLKELNAEFQKGLQIDLTEHQQKLEKVQKQFE 943 ++ L E+ +K A + + E ++ ++ AE Q L+ + ++KL K ++ Sbjct: 398 VEKAL-EEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELA 456 Query: 944 KIGAVNLAASQE 955 K+ A + SQ Sbjct: 457 KLRAGKASDSQT 468
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 36.0 bits (83), Expect = 2e-05 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%) Query: 46 HEMQEE-----ASHADAIIRRVLFLGAKPNMHREDINVGTDV---------VSCLKADLA 91 HE EE A D I R+L +G +P ++ + ++A + Sbjct: 47 HEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVN 106 Query: 92 LEYHVREKLATGIKLCEEKGDYISRDMLRQQLSDTEE 128 + + I L EE D + D+ + + E+ Sbjct: 107 DYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK 143
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.7 bits (98), Expect = 4e-06 Identities = 69/371 (18%), Positives = 134/371 (36%), Gaps = 28/371 (7%) Query: 38 PLIPFAQQRLNLNH---ADFGLLLLCMGIGSMIAMPATGALVKRWGCRPLIALALMLLMV 94 P++P + L ++ A +G+LL + P GAL R+G RP++ ++L V Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV 85 Query: 95 LLPSLTMWNSIVMMAVALFVFGSAAGCLGVAINLQAVVVEKHSLRALMSSFHGMCSLGGL 154 + + ++ + V G VA A + + RA F C G+ Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDE-RARHFGFMSACFGFGM 144 Query: 155 TGAMLVTALLAVGLS---PLMSTLSVVMILLVIGAVAIPPCLTSFEQDEKPHQEADTPKK 211 ++ L+ G S P + ++ + + G +P + + +EA P Sbjct: 145 VAGPVLGGLMG-GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLR--REALNPLA 201 Query: 212 LYRPNGIILLIGMMCFIAFL----SEGAAMDWGGIYLTSKYELNPAFAGLAYTFFAL--S 265 +R + ++ + + F+ + A W I+ ++ + G++ F + S Sbjct: 202 SFRWARGMTVVAALMAVFFIMQLVGQVPAALW-VIFGEDRFHWDATTIGISLAAFGILHS 260 Query: 266 MTTGRFTGHIMLKQWGEKNVVTYSAIGAAIGMAVIVTAPVWQVVVLGYALLGLG--CSNI 323 + TG + + GE+ + I G ++ A + LL G Sbjct: 261 LAQAMITGPVA-ARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPA 319 Query: 324 VPVMFSRVGRQNDMPKAAALSLVSTIAYTGSLSGPALIGLI-----GEWTGLSTVLTGVA 378 + M SR + + + + S+ GP L I W G + G A Sbjct: 320 LQAMLSRQVDEERQGQLQGSL--AALTSLTSIVGPLLFTAIYAASITTWNGW-AWIAGAA 376 Query: 379 VLLFIIALLNR 389 + L + L R Sbjct: 377 LYLLCLPALRR 387
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 29.4 bits (66), Expect = 0.024 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 21/111 (18%) Query: 39 APEFEQAYSQGIDYITCPLTHQQYAQYYCGFANKVLWPAMHDREDLIEYDSQEYNTYQKV 98 +P ++ Y P + ++ + K P RE ++ T + Sbjct: 102 SPVIDKIYVDAYQ----PFSEEKIS--MQEALEKGAQPL---REFMLR------QTREAD 146 Query: 99 NRLFAE--KLKQLAQPEDIIWIHDYHFFSVARYCRELGMQNKIGFFLHIPF 147 LFA L PE + A EL +IGF + IPF Sbjct: 147 LGLFARLANTGPLQGPEAV----PMRILLPAYVTSELKTAFQIGFTIFIPF 193
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 27.9 bits (62), Expect = 0.039 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 7/74 (9%) Query: 3 SQSTISNGREKNTYFVTSNDIINTLSLDKNYCLFLDIDGTLAPFQINPEQSFIPKTTLEI 62 S+ + + VTS S K Y + + IN E+ P+ + Sbjct: 187 SKDKFNKIPAEKKLIVTSEGAFKYFS--KAYGV---PSAYIWE--INTEEEGTPEQIKTL 239 Query: 63 IKEIIELNIPVIAV 76 ++++ + +P + V Sbjct: 240 VEKLRQTKVPSLFV 253
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 73.0 bits (179), Expect = 5e-16 Identities = 71/405 (17%), Positives = 147/405 (36%), Gaps = 17/405 (4%) Query: 21 HWKVLIWCLLIIIFDGYDLVIYGVALPLLMQQWSLTAVEAGLLASAALFGMMFGAMIFGT 80 H ++LIW ++ F + ++ V+LP + ++ + +A + G ++G Sbjct: 12 HNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71 Query: 81 LSDKLGRKKTILICVTLFSGFTFIGAFAKGPTEFAIL-RFIAGLGIGGVMPNVVALMTEY 139 LSD+LG K+ +L + + + IG I+ RFI G G V+ ++ Y Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 140 APKKIRSTLVAIMFSGYAIGGMTSALLGAWLVKDMGWQIMFLLAGIPLLLLPLIWKFLPE 199 PK+ R ++ S A+G +G + + W + L+ I ++ +P + K L + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 200 SLTFLVKSNQSEQAKSIVSKIAPQTQVNANTQLVLNEST-------TTEAPVRALFQQGR 252 + + V + + + L S V F Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 253 TFSTFMFWIAFFMCLLMVYALGSW--LPKLMLQAGYSLG---ASMLFLFALNIGGMVGAI 307 F I ++ + + + M++ + L + +F + ++ Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 308 GGGALADRFHLKPVITIMFIVGSAALILLGI---NSPQFILYSLIAIAGAATIGSQILLY 364 GG L DR V+ I S + + + F+ ++ + G + ++ ++ Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF-TKTVIS 370 Query: 365 TFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALLTFELPHQ 409 T V+ GM + + G + G LL+ L Q Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415 Score = 32.5 bits (74), Expect = 0.003 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 304 VGAIGGGALADRFHLKPVITIMFIVGSAALILLGINSPQF---ILYSLIAIAGAATIGSQ 360 +G G L+D+ +K ++ I+ ++ + F I+ I AGAA + Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA- 122 Query: 361 ILLYTFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALL-TFELPHQMNFLAIAIPG 419 L+ VA++ P R G I +G +GP + G + + + I I Sbjct: 123 -LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181 Query: 420 V 420 V Sbjct: 182 V 182
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.0 bits (241), Expect = 3e-26 Identities = 66/268 (24%), Positives = 109/268 (40%), Gaps = 25/268 (9%) Query: 3 NRQRFTDKVVIVTGSAQGIGRGVALQVATEGGQVVMAD-RSEYVEEVLKEIQNTGGDAVT 61 N + K+ +TG+AQGIG VA +A++G + D E +E+V+ ++ A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 62 INADLETYEGAQAVVAKAIEHYGRIDILINNVGGAIWMKPFEEFSEEEIIKEVNRSLFPT 121 AD+ + A+ G IDIL+ NV G + S+EE + + Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 122 LWCCRAVLPAMLKQQSGVIVNVSSIA--TRGINRIPYSASKGGVNALTASLAFEHAKDGI 179 R+V M+ ++SG IV V S + Y++SK T L E A+ I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 180 RVNAVATGGTEAPPRKVPRNANPLSQNEKDWMQQVVDQTIDRTF---------MGRYGTI 230 R N V+ G TE W + + + + + + Sbjct: 181 RCNIVSPGSTET------------DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKP 228 Query: 231 QEQVNAILFLASDEASYMTGSVISVGGG 258 + +A+LFL S +A ++T + V GG Sbjct: 229 SDIADAVLFLVSGQAGHITMHNLCVDGG 256
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.027 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 247 VTNDFDLVALE-KLNELQAKFPWFEYRTVVASPESNHERKG 286 +T D+DL AL L E++ + P E+ VV +P S ++KG Sbjct: 488 LTADYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKG 528
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 29.0 bits (65), Expect = 0.017 Identities = 9/52 (17%), Positives = 15/52 (28%) Query: 253 AGSWGKQGGGSYGFENGHMLLWTQWANPEDRPNFPKADEYTEKYGEAMSKWM 304 A + G G + L + P ++ + P E M W Sbjct: 72 ALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWR 123
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.9 bits (124), Expect = 1e-10 Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 12/177 (6%) Query: 1 MAGRPRE---FDREEALVKARDFFWLHGYEGTSMSDLVEVLGIASARIYKAFGSKEALFR 57 MA + ++ R+ L A F G TS+ ++ + G+ IY F K LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 58 EAVNHYEKNEGNFALNALKQKNIKDAINQLFQDALALYTQANHSYGCMVVSAASVLGEEN 117 E E N G + K D ++ L + + + ++ + Sbjct: 61 EIWELSESNIGE-LELEYQAKFPGDPLSVLREILIHVLESTVT--EERRRLLMEIIFHKC 117 Query: 118 QAVLDWMKAQRIARG------QSLVERFVQAKSDGQLVADADPKTLGQYYALVLHGL 168 + V + Q+ R + + L AD + + GL Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 66.1 bits (161), Expect = 7e-14 Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 1/186 (0%) Query: 8 QSTQYSLSWILFLSLLMALGPLSVDMYLPALNHMAKDLSVSVQVVSNTLPAYFFGLAVGQ 67 QS +++L +L L+ + +L +A D + + A+ ++G Sbjct: 7 QSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGT 66 Query: 68 LIYGPISDALGRKKPLYFGLALYIFASILCVYSQNIYQ-LIFLRVIQALGGCVGVVIVRA 126 +YG +SD LG K+ L FG+ + F S++ + + LI R IQ G +V Sbjct: 67 AVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMV 126 Query: 127 VVRDKLTLQASAQAFTTLMMILAIAPVIAPSIGALILEYYYWHMIFILMALIGIACLLGV 186 VV + + +AF + I+A+ + P+IG +I Y +W + ++ + I + Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLM 186 Query: 187 HFFFKE 192 KE Sbjct: 187 KLLKKE 192
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.021 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 6 RDFRNALSKFPTGVTIITAYDKNGEKIG 33 RDF KF G T + DKN + +G Sbjct: 38 RDFAENKGKFSVGATNVLVKDKNNKDLG 65
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 61.0 bits (148), Expect = 3e-12 Identities = 75/385 (19%), Positives = 145/385 (37%), Gaps = 35/385 (9%) Query: 24 VVLLCFIAMISEGYDIGIMGVIIPTLLQE-VSWNVTAVHMGYIGSAAFLGTLIGCYLFSA 82 +V+L +A+ + G IG++ ++P LL++ V N H G + + L + A Sbjct: 8 IVILSTVALDAVG--IGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 83 LSDLFGRKKLLIGCLIIFTSSMIVAAMAQDPITFVIARGICGIGVGGIIPIACALTSEYS 142 LSD FGR+ +L+ L + A A I R + GI G +A A ++ + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADIT 124 Query: 143 DEKHKNFYFALMYCGYPAGALLAALVGMFYLDEYGWRPLIAVGALPLLLVPVFIKYLPES 202 D + +F M + G + ++G P A AL L LPE Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE- 183 Query: 203 ISFLLSQNRKQEALQLADKIGIAQGSIENYQVSKEEKVNIFSLLKELFSAKHLRATTLFW 262 S ++ L+ E +N + + + A L Sbjct: 184 -----SHKGERRPLR-------------------REALNPLASFRWARGMTVVAA--LMA 217 Query: 263 SSQIATVLGVYGLSTW-LPQIMKTNGYGISSSISFLAIFMLSAGLGSLFIGRLTDRLNTR 321 I ++G + W + + + + IS A +L + ++ G + RL R Sbjct: 218 VFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGER 277 Query: 322 KTIVMFYLIGAVAIFCLSFNYHIALTYVLVALAGIGITGVGMVQL-GYITHYYPTKIRAS 380 + +++ + L+F + + ++ L G G+GM L ++ + + Sbjct: 278 RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG--GIGMPALQAMLSRQVDEERQGQ 335 Query: 381 AVGWAIGVGRIGAIMGPIIAGYLLA 405 G + + +I+GP++ + A Sbjct: 336 LQGSLAALTSLTSIVGPLLFTAIYA 360
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.0 bits (233), Expect = 3e-25 Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 12/249 (4%) Query: 3 KVILITGAGEGIGFSIAEYLVSQQYQVIVTDLTLEKAEAAVA--KLAVNNAFAHKLDITQ 60 K+ ITGA +GIG ++A L SQ + D EK E V+ K +A A D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 61 PTDFDVVSGWIKEKFHKLDALINNAAMTRTTSLFEISADEFVEISRINQMGTFLACQHFG 120 D ++ I+ + +D L+N A + R + +S +E+ +N G F A + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 121 QWMAQQGQGRIINMSSLAGQNGGVAVGAHYAISEGAILTMTKLFAKALAESGVTVNAIAC 180 ++M + G I+ + S ++ A YA S+ A + TK LAE + N ++ Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAA-YASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 181 GPVDSPAFHRL-VQVNEIPEILK--------SIPVKKLGDMRFIAQTIELLIQNNSGFVT 231 G ++ L N +++K IP+KKL IA + L+ +G +T Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 232 GATWDMNGG 240 ++GG Sbjct: 248 MHNLCVDGG 256
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 29.4 bits (66), Expect = 0.022 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 239 EKFWDELKSRLDPESREKLVTGASIEKSIAPLRSFVTEPMRFGKLFLAGDAAHIVPPTGA 298 +K + + P S EK+ ++EK PLR F+ R L L A+ P G Sbjct: 106 DKIYVD---AYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGP 162 Query: 299 KGLNLAASDIAYLSSAL 315 + + + AY++S L Sbjct: 163 EAVPMRILLPAYVTSEL 179
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.5 bits (113), Expect = 6e-08 Identities = 65/400 (16%), Positives = 130/400 (32%), Gaps = 33/400 (8%) Query: 19 IAFIFAFLALLVDGADLMLLSYSLNSIKADFGLSSVQAG----MLGSFTLAGMAVGGIFG 74 I + +D + L+ L + D S+ +L + L A + G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 75 GWACDKFGRVRIVVISILIFSLLTCGLGFTQSFLQFGILRFFASLGLGSLYIACNTLMAE 134 + D+FGR ++++S+ ++ + I R A + G+ +A+ Sbjct: 65 ALS-DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIAD 122 Query: 135 YVPTRYRTTVLGTLQAGWTVGYIVATLLAGWIIPDHGWRMLFYVAIIPVIIAVLMHIF-V 193 R G + A + G + +L G ++ F+ A + L F + Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 194 PEPQAWQQARLQQPVAAQNSQKTSAFKLIFQDKQNRNMFILWALTAGFLQFGYYGVNNWM 253 PE ++P+ + ++F+ + ++ + Q Sbjct: 182 PES----HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQV--------- 228 Query: 254 PSYLESELGMKFKEMTAYMVGTYTAM------ILGKVLAGMMADKLGRRFTYAFGAIGTA 307 P+ L G A +G A + ++ G +A +LG R G I Sbjct: 229 PAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADG 288 Query: 308 IFLPLIVFYNSPSNILYLLVSFGFLYGIPYGVNATYMTESFATAIRGTAIGGAYNVGRLG 367 L+ F ++V GI ++ +G G + L Sbjct: 289 TGYILLAFATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLT 347 Query: 368 AALAPATIGFLAS---GGSIGLGFVVMGAAYLICGVIPAL 404 + + P + + G ++ A YL+C +PAL Sbjct: 348 SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLC--LPAL 385
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.7 bits (90), Expect = 3e-05 Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 35 ISLSLNLTETTIAWVPTLAQITYACGLLFLMPLGDILEKRKLLFTFMLLAASGLIISGFS 94 I+ N + WV T +T++ G L D L ++LL +++ G +I Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 95 HNIY-LLLLGTIITGLFSSS-AQLLLPLAASLVPIQQSGRVVGFLLSGLMMGVLLARSLS 152 H+ + LL++ I G +++ L++ + A +P + G+ G + S + MG + ++ Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIG 159 Query: 153 GLMSTLFAWNVIYLV 167 G+++ W+ + L+ Sbjct: 160 GMIAHYIHWSYLLLI 174
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (259), Expect = 7e-29 Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 6/249 (2%) Query: 3 KKVFISAGGSGIGRCIAEAFLNNDDEVFVCDINAQRLEQFQKDYPKLHTHA----CDLAE 58 K FI+ GIG +A + + D N ++LE+ HA D+ + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 59 PEQIKLMFAEAIQKLGHIDVLVNNTGISGPTIAADELSFDDWNTVINLNLNSTFLITQLA 118 I + A +++G ID+LVN G+ P LS ++W ++N F ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 119 IPLLKQSGAGVIINMSSIAGRLGYPYRLAYSTSKWGLIGFTKTLSMELGADNIRVNAILP 178 + +G I+ + S + AY++SK + FTK L +EL NIR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 179 GAVDGDRVQRVLQARADVAQSSLEKVTQNALKNQSLKYFVNPKHIADLCLFLASDSGRSI 238 G+ + D +Q L A + A+ ++ + LK P IAD LFL S I Sbjct: 188 GSTETD-MQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 239 SGQILPIDG 247 + L +DG Sbjct: 247 TMHNLCVDG 255
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.6 bits (134), Expect = 7e-10 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 11/113 (9%) Query: 929 RKRILVVDNEAVDRGLVANFLKPLGFIIEEAESGIDCLRRVPIFQPNLILMDLNMPLMGG 988 ILV D++A R ++ L G+ + + R + +L++ D+ MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 989 WETARLLRQNNITNVPILIISANAGEREVNPQDAVLS-----EDFMLKPIDLN 1036 ++ +++ ++P+L++SA A+ + D++ KP DL Sbjct: 63 FDLLPRIKKAR-PDLPVLVMSAQN-----TFMTAIKASEKGAYDYLPKPFDLT 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 4e-20 Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 IL+ DD +L+++L +AGY V +T++ + D+++ D MP + F+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHAK 138 ++K +PV+ M+ + ++ + G DY+ KP ++ E++ + LA K Sbjct: 66 LPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 139 LLQQQKQVIDATETAIL 155 + + ++ Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 6e-04 Identities = 58/288 (20%), Positives = 113/288 (39%), Gaps = 21/288 (7%) Query: 43 LTPISSDLNMSEGQVGQAIAISGIFAVVASLTISRVFKTWDRRHI--MLLLTLLMIVSGM 100 L I++D N F + S+ + K D+ I +LL +++ G Sbjct: 37 LPDIANDFNKPPASTNWVNTA---FMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGS 93 Query: 101 LITF-AHS-AALFMVGRAILGVVIGGFWAMSTSIVMRLVPPLSVPKALGLLNGGNALATT 158 +I F HS +L ++ R I G F A+ +V R +P + KA GL+ A+ Sbjct: 94 VIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEG 153 Query: 159 IAAPLGSFLGSIIGWRGAFFCIVPIAIIALVWQFKSMPALPAMMSVEKSKNPFGLLKRPI 218 + +G + I W ++ ++P+ I V + + + K F + + Sbjct: 154 VGPAIGGMIAHYIHW--SYLLLIPMITIITV-----PFLMKLLKKEVRIKGHFDIKGIIL 206 Query: 219 VFYGMTGILLLFMGQFALFTYLR--PFLEIVSHVDAAMLSILLLILG--IAGLIGTFVIS 274 + G+ +L F + FL V H+ + LG I +IG Sbjct: 207 MSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLC-G 265 Query: 275 FILHQHVYRYLILIPLIMASIAY--AFVLGGHHLWLVAILMGLWGFIG 320 I+ V ++ ++P +M + +G ++ + + ++G+IG Sbjct: 266 GIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.0 bits (75), Expect = 6e-05 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 25 EMTYTWAGEGMLIIDATDVNENYRGQGVGRQLLDALVAFVREK 67 ++ W G +I+ V ++YR +GVG LL + + +E Sbjct: 81 KIRSNW--NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN 121
>PF06580#Sensor histidine kinase Length = 349 Score = 26.8 bits (59), Expect = 0.011 Identities = 15/52 (28%), Positives = 21/52 (40%) Query: 25 LLSQHLPTLFKYLGLLFLIIGLIALFASLPKVVAAFCWFMLLIFAWSFLPFM 76 +L+ + K G L L +G I L VV WF+ W L F+ Sbjct: 54 VLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFI 105
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 70.1 bits (171), Expect = 1e-16 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 11/174 (6%) Query: 28 FKMPFYCYGLDL----SKTLHLHIDQQLEHPKKIVQAHPKRQHEYLCGRILAQAVLKHHL 83 F +PF + L + + + H L H ++ A KR+ E+L GRI A L+ Sbjct: 6 FPLPFAGHRLHIVDFDASSFREHDLLWLPHHDRLRSAGRKRKAEHLAGRIAAVHALREVG 65 Query: 84 DLDQPLTSMHEHLPVWPPHVLGSISHSQNKLIVALSDKAGYLGIDIEHWVTSEFAQQSAH 143 P P+WP + GSISH + +S + +GIDIE ++ A + A Sbjct: 66 VRTVPGMGDKRQ-PLWPDGLFGSISHCATTALAVISRQR--IGIDIEKIMSQHTATELAP 122 Query: 144 LILTPSELELWKIKASEFFDFSQFVSLIFSVKESLYKAVYPIAKQYIDFLEAFV 197 I+ E + I + F ++L FS KES+YKA + F A V Sbjct: 123 SIIDSDERQ---ILQASLLPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSAKV 172
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 4e-04 Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 14/262 (5%) Query: 13 LKRNAHFRHVFIARTLSLLTIGMLVVAIPKQVYDLTGSSLNVA---VAMAFEGVAMFIGL 69 +K N + L + IG+++ +P + DL S+ A + +A + F Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 70 LLGGLLSDRKDRKWLILLARSVCGLGFAGLAINAMFEQPSLYAIYFLSAWDGFFGALGVT 129 + G LSDR R+ ++L+ L A + M P L+ +Y G GA G Sbjct: 61 PVLGALSDRFGRRPVLLV-----SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV 115 Query: 130 AMMAIMPVIVGRENIVQARAISMVS--VRLATVISPAIGGILIAFSGVTTVYWVSTVGTL 187 A I + G E +AR +S V P +GG++ FS + + + L Sbjct: 116 AGAYIADITDGDE---RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGL 172 Query: 188 LTVFLLMGLPALKPQHAANGESPLRQLVQGFKFVFKNKVVGSTILIGTLLS-FSSAIRII 246 + LP + F++ VV + + + ++ + Sbjct: 173 NFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 247 FPQMADEIFHGGAFELGLMYSA 268 + ++ FH A +G+ +A Sbjct: 233 WVIFGEDRFHWDATTIGISLAA 254
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.5 bits (71), Expect = 0.043 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 8/101 (7%) Query: 2029 RKALPRPQLNSANTEKQYATT--AFEHELTGIFQKILNTDQEIGVNEDFFAIGGHSILVM 2086 + A Q SANT K+ T ++ + Q+ T ++I ED G S+ +M Sbjct: 211 QNAPADVQKTSANTGKKNVFTCENIRKQIAELLQE---TPEDITDQEDLLDRGLDSVRIM 267 Query: 2087 KLAIEIRKVFKRTIPIGQLMSHVTIQRLAALLLTQERLEEV 2127 L + R+ + +L TI+ LL R ++V Sbjct: 268 TLVEQWRRE-GAEVTFVELAERPTIEEWQKLL--TTRSQQV 305
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 221 bits (563), Expect = 3e-74 Identities = 105/253 (41%), Positives = 146/253 (57%), Gaps = 3/253 (1%) Query: 5 IVVTGAARGIGAAIAKQLLQQGYQVIGIDQQENPEQWEISKNLTSDECLRWQGISQDITQ 64 +TGAA+GIG A+A+ L QG + +D NPE+ E + E + D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDY--NPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 QQATQKLIADLLEK-HNITGLVNAAGVLIMRSMLEAKTEDWDTLFAVNVMAPIAISQQLA 123 A ++ A + + I LVN AGVL + E+W+ F+VN S+ ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 124 KHFCEKKQGSIVTISSNSSRMPRIQLGMYATSKAALSHFCRNLALEIAPHQVRLNIVSPG 183 K+ +++ GSIVT+ SN + +PR + YA+SKAA F + L LE+A + +R NIVSPG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 184 STLTQMQQQLWTDNTPPPAVIDGDLSQYRTGIPLRKLAQPEDIANTVSFLLSDQAAQITM 243 ST T MQ LW D VI G L ++TGIPL+KLA+P DIA+ V FL+S QA ITM Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 244 QEIVVDGGATLGV 256 + VDGGATLGV Sbjct: 249 HNLCVDGGATLGV 261
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.026 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 356 TKDQIIHTQGLKISKDDEILVLDDNDQPVEAGQVGHLLTRGPYTIR-GYYQAPEHNERSF 414 + +QII+ + ++ K IL D + +E V + L R P YYQAPE + Sbjct: 358 SNEQIINKEKIREEKQKIIL---DQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHI 414 Query: 415 TPDGFYRTG 423 P + G Sbjct: 415 MPSEIFDDG 423
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 334 bits (857), Expect = e-117 Identities = 143/294 (48%), Positives = 188/294 (63%), Gaps = 11/294 (3%) Query: 1 MSIPKIASYSMPQAHEFTANKTHWQLHTNRAVLLVHDMQQYFLDFYDQTQAPIPELIKNT 60 M+IP I Y MP A + NK W NRAVLL+HDMQ YF+D + +P+ EL N Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 KELIETARKFNIPVVYTAQPGNQTPEHRQLLTDFWGTGLKDDPNITQILPEITPQKNDTV 120 ++L + IPVVYTAQPG+Q P+ R LLTDFWG GL P +I+ E+ P+ +D V Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 121 LTKWRYSAFKFSPLEQLMRESNRDQLIICGVYAHIGCLMSAAEAFMLNIQPFLCGDALAD 180 LTKWRYSAFK + L ++MR+ RDQLII G+YAHIGCL++A EAFM +I+ F GDA+AD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 181 FSREEHDMALKYASTRCAQVMTTQQVTRAWELEQA-----------ASPLTQEGIVLAVS 229 FS E+H MAL+YA+ RCA + T + + A + T E I ++ Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240 Query: 230 EQLQIPVSDIQLNDDLLMLGLDSVRLMTLVGKWQAYGAQVSFEDLAEQPTLEVW 283 E LQ DI +DLL GLDSVR+MTLV +W+ GA+V+F +LAE+PT+E W Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEW 294
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 938 bits (2425), Expect = 0.0 Identities = 462/1029 (44%), Positives = 669/1029 (65%), Gaps = 8/1029 (0%) Query: 2 LSRFFIYHPIFVSVIAITILIFGFFATLAMPVERYPNLAPPSVTVVANYRGAAADTVEES 61 ++ FFI PIF V+AI +++ G A L +PV +YP +APP+V+V ANY GA A TV+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 62 VTQILEQQIKGLDNLLYFTSYSESSGTSSIDIHFKIGTDIDKAQLQVQNRINGALNRLPE 121 VTQ++EQ + G+DNL+Y +S S+S+G+ +I + F+ GTD D AQ+QVQN++ A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 EVQRQGVNIWKTTGDMLLIVGLYDEKGKASNIELSDYMVNHFEQPLSQLQGIGEVDVFGS 181 EVQ+QG+++ K++ L++ G + + ++SDY+ ++ + LS+L G+G+V +FG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 182 SYAMRIWLNPNQLRNYQLVPSDIEQALEDYNTQIAAGSIGAMPSASDQNIYAKVKAGSRL 241 YAMRIWL+ + L Y+L P D+ L+ N QIAAG +G P+ Q + A + A +R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 242 KTIDDFKSVVVKANIDGSLVYLKDVARVELGAENYESINTLNGYPSAGLGISLSPDANAI 301 K ++F V ++ N DGS+V LKDVARVELG ENY I +NG P+AGLGI L+ ANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 302 ETSALIKEKMVQLSQHLPAGYKIVYPRDNTPFIEESIKQVIITLLEAIVLVVIVMYLFLQ 361 +T+ IK K+ +L P G K++YP D TPF++ SI +V+ TL EAI+LV +VMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 362 NWRATLIPTITVPIVISGTFVVLYLFGMSINTLTLFALVLAIGLLVDDTIVVVENVERLM 421 N RATLIPTI VP+V+ GTF +L FG SINTLT+F +VLAIGLLVDD IVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 422 HEQQLSVREACLMSMQEISGALVGITLVLTAVFIPMAFFSGSTGMIYRQFSITLAAAMLL 481 E +L +EA SM +I GALVGI +VL+AVFIPMAFF GSTG IYRQFSIT+ +AM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 482 SLFVAMTITPAMCAVLLKK-----HNTKPKWGQALELALQKVRSTFSFLSIRLIQFKVFS 536 S+ VA+ +TPA+CA LLK H K + + ++ +++ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 537 SLLVVGIAVILFMIYRGLPTSFIPNEDQGLLAVPYSLHNSASMSQTEEVGKLVNNYFFEH 596 L+ I + +++ LP+SF+P EDQG+ L A+ +T++V V +Y+ ++ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 597 ESKNINTVLVVNGQNFSGSGPNLGMAFISLKHWNERKGEANTASAIRERAQAYLQKNLPA 656 E N+ +V VNG +FSG N GMAF+SLK W ER G+ N+A A+ RA+ L K Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 KVMVGMPPSVSGLGQSDALELWLRDVNGQGRDELIKQ-YKVLEKEARNYSAFENLSPLVS 715 V+ P++ LG + + L D G G D L + ++L A++ ++ ++ P Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 EDKAEVFIQLDQNKAKMLGIDQQVIRSTLSTAWGGNYVGDFVERGRIKRIIMQGDSEFRS 775 ED A+ +++DQ KA+ LG+ I T+STA GG YV DF++RGR+K++ +Q D++FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 KPEDLAYWHVRNNTGGMLSLAHFAQSQWTGGPEALTRFMGLAAIQLEANISSGFSSGQAM 835 PED+ +VR+ G M+ + F S W G L R+ GL +++++ + G SSG AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 QELTDMVAK-QSGVDVAWSGLSLQEQQSNRQAIFLYVISILFIFLCLAALYESWKVPFII 894 + ++ +K +G+ W+G+S QE+ S QA L IS + +FLCLAALYESW +P + Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 895 LLGLPLGITGTIIFAKVFSLPNDVYFQIALLTGIGLSCKNAILIVEFATQAL-KQGKSKI 953 +L +PLGI G ++ A +F+ NDVYF + LLT IGLS KNAILIVEFA + K+GK + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 954 DAASEALKLRLRPILMTSLAFGAGVIPLIFATGAGAASRYEIGMSVFGSVVFGTLLVPLF 1013 +A A+++RLRPILMTSLAF GV+PL + GAG+ ++ +G+ V G +V TLL F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1014 TVFFFVMIH 1022 FFV+I Sbjct: 1021 VPVFFVVIR 1029 Score = 102 bits (256), Expect = 4e-24 Identities = 77/513 (15%), Positives = 175/513 (34%), Gaps = 32/513 (6%) Query: 6 FIYHPIFVSVIAITILIFGFFATLAMPVERYPNLAPPSVTVVANY-RGAAADTVEESVTQ 64 + +I I+ L +P P + GA + ++ + Q Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 65 ILEQQIKGLDNLLY-------FTSYSESSGTSSIDIHFKIGTDIDKAQLQVQ---NRING 114 + + +K + F+ ++ + K + + + + +R Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKM 652 Query: 115 ALNRLPEEVQRQGVNIWKTTGDMLLIVGLYDEKGKASNIELSDYMVNHFEQPLSQL--QG 172 L ++ + + L +D + D + Q L Sbjct: 653 ELGKIRDGF---VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHP 709 Query: 173 IGEVDVFGS----SYAMRIWLNPNQLRNYQLVPSDIEQALEDYNTQIAAGSIGAMPSASD 228 V V + + ++ ++ + + + SDI Q + +T + + Sbjct: 710 ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTI---STALGGTYVNDFIDRGR 766 Query: 229 Q-NIYAKVKAGSRLKTIDDFKSVVVKANIDGSLVYLKDVARVELGAENYESINTLNGYPS 287 +Y + A R +D + V++ +G +V + NG PS Sbjct: 767 VKKLYVQADAKFR-MLPEDVDKLYVRSA-NGEMVPFSAFTTSHWV-YGSPRLERYNGLPS 823 Query: 288 AGLGISLSPDANAIETSALIKEKMVQLSQHLPAGYKIVYPRDNTPFIEESIKQVIITLLE 347 + +P ++ + AL++ +L PAG + + S Q + Sbjct: 824 MEIQGEAAPGTSSGDAMALMENLASKL----PAGIGYDW-TGMSYQERLSGNQAPALVAI 878 Query: 348 AIVLVVIVMYLFLQNWRATLIPTITVPIVISGTFVVLYLFGMSINTLTLFALVLAIGLLV 407 + V+V + + ++W + + VP+ I G + LF + + L+ IGL Sbjct: 879 SFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSA 938 Query: 408 DDTIVVVENVERLMHEQQLSVREACLMSMQEISGALVGITLVLTAVFIPMAFFSGSTGMI 467 + I++VE + LM ++ V EA LM+++ ++ +L +P+A +G+ Sbjct: 939 KNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGA 998 Query: 468 YRQFSITLAAAMLLSLFVAMTITPAMCAVLLKK 500 I + M+ + +A+ P V+ + Sbjct: 999 QNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.002 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 15/109 (13%) Query: 40 LKNFG------QYYVNDPLGCFITVKDKNRIIGTIAYRAYDHRFDLNLPPNTAEVVKLFV 93 K + Y + F+ + N IG I R+ + + A + + V Sbjct: 47 FKQYEDDDMDVSYVEEEGKAAFLYYLE-NNCIGRIKIRSNWNGY--------ALIEDIAV 97 Query: 94 LPEYRRNGIATQLCNMLFSYAKKNGIATLYLHTHPFLPAAEEFWTLQGF 142 +YR+ G+ T L + +AK+N L L T +A F+ F Sbjct: 98 AKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.015 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 7/47 (14%) Query: 31 VILGRNGCGKSTLFKLMAGLEPVKDGLIRYSGKPLSDFKGKDRAALL 77 V+ G G GKSTL + GL+ D GKD + Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDT-------HFDIGTGKDSYEQI 639
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.6 bits (64), Expect = 0.038 Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 14/162 (8%) Query: 148 MESGTYQQVKEELSEIAILSGAQKRAQEILSFSDEVVAEVAAKTARQPNKQSIYYAWSGG 207 ME +++ + ++ L+G QK A ++S E+ ++V K Q +S+ + + Sbjct: 1 MEEKKEKEILD----VSALTGKQKAAILLVSIGSEISSKV-FKYLSQEEIESLTFEIAKL 55 Query: 208 RIFSTSGRKSITNDFIELAGAFNIVQT--DANQPNVNPETLIEWNPDNIVLWNTNPKLIY 265 ++ + ++ +F EL A +Q + ++L +I+ + Sbjct: 56 ETITSELKDNVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSA---L 112 Query: 266 ERKELQGLSAVQNRKVFNLSPAFIYNPHTIKIIITAIYLNHS 307 + + + + + N FI H I + YL+ Sbjct: 113 QSRPFEFVRRADPANILN----FIQQEHPQTIALILSYLDPQ 150
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 1e-09 Identities = 11/46 (23%), Positives = 19/46 (41%) Query: 12 SVLHTSRNLFNNYGFHKVGVDRIIEAAKMPKATFYNYFHSKERLIE 57 +L + LF+ G + I +AA + + Y +F K L Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.7 bits (126), Expect = 1e-10 Identities = 31/152 (20%), Positives = 67/152 (44%), Gaps = 6/152 (3%) Query: 3 TSLSESQMKTKLLNAAAMLLMEEGVNSLTTRKIANAANTSTMAVYTNFGSINNLANELI- 61 T + + +L+ A L ++GV+S + +IA AA + A+Y +F ++L +E+ Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 62 -AHGFILLWEEVRLVQF---SEDALVDLLHITTGYLNFANKQPALYKCMFGVT-SLGELK 116 + I E +F L ++L ++ L + +F +GE+ Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 117 TSEKENLKSGLYTLDIVVKTVQRLIDGKVIKA 148 ++ L + D + +T++ I+ K++ A Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPA 156
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.8 bits (103), Expect = 1e-07 Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 7/169 (4%) Query: 12 EKKSPRTRLLEAAMRIIENQGPSQIKARTVALEAGQSTMGVYTHFGGVPELLQAIADEGF 71 E + R +L+ A+R+ QG S +A AG + +Y HF +L I + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL-- 65 Query: 72 TQQARLFKSIENTDEPMTNMCLMALECR-NFAMANPHLYDLMFGLSIQGRYTPLRRSEAS 130 ++ + + L L + + + L + E + Sbjct: 66 -SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 131 ANESTEAFKNSYSYLRQECVNLIETKYIR-DIDPDVMAAQLWSALHGFI 178 + + N ++ + D+M + + G+I Sbjct: 125 VVQQAQR--NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 93.6 bits (232), Expect = 8e-25 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 21/244 (8%) Query: 1 MTGKVVLITGASSGIGLATANLLHEAG--------------FIVYGTSRQAKDSSKYKFH 46 + GK+ ITGA+ GIG A A L G +V +A+ + + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP-- 63 Query: 47 LIELDVNQEDSVAQAVEKVIATEGKIDVLINNAGFAIAPAGAEESSMQQAQAIFDTNFFG 106 DV ++ + ++ G ID+L+N AG + P S ++ +A F N G Sbjct: 64 ---ADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTG 119 Query: 107 AVRMTRAVIPHMRQKKSGLILNISSILGLLPLPFGALYSASKHALEGYSESLDHELRSQG 166 +R+V +M ++SG I+ + S +P A Y++SK A +++ L EL Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 167 IRVSLIEPAYTNTSLGVNLLEADNKISFYDQTREKLHKQMINSINKSDDPSVVANTILTV 226 IR +++ P T T + +L +N + + K I + K PS +A+ +L + Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGI-PLKKLAKPSDIADAVLFL 238 Query: 227 IQSQ 230 + Q Sbjct: 239 VSGQ 242
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.2 bits (130), Expect = 2e-11 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 20/191 (10%) Query: 12 SVLHSARYLFNKHGFHNVGVDRIIEAAKIPKASFYNYFHSKERLIEMSLNFQKDGLKEEL 71 +L A LF++ G + + I +AA + + + Y +F K L + + EL Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG-EL 73 Query: 72 LSIIYVQKDLTLVEKLRKIY--FLHADLEG-LYHLPFKAIFEIAKTHPKAYQVVIDYRNW 128 + + LR+I L + + L + IF + + VV + Sbjct: 74 ELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM-AVVQQAQRN 132 Query: 129 LIKEIYNLL------------LTTNVNASKQDAHMFLFVIDGAMVQ-LLDPSKPDERERL 175 L E Y+ + L ++ + A + I G M L P D ++ Sbjct: 133 LCLESYDRIEQTLKHCIEAKMLPADLMTRRA-AIIMRGYISGLMENWLFAPQSFDLKKEA 191 Query: 176 LEYF-LLGLGL 185 +Y +L Sbjct: 192 RDYVAILLEMY 202
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 1e-13 Identities = 29/186 (15%), Positives = 77/186 (41%), Gaps = 14/186 (7%) Query: 1 MARP---RSEDKRNAILSATIETLAELG-ERASTSKIAKVAGVAEGTLFTYFSSKEELLN 56 MAR +++ R IL + ++ G S +IAK AGV G ++ +F K +L + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 57 QLYLSLKAELRQVMILNY-PAHSDLQTQMSHIWQSYLDWSLEAPLKRKVMAQLSTSEQ-- 113 +++ ++ + ++ + D + + I L+ ++ +R +M + + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 114 -----ITEQSKQIGMQTFCDLTQNIQEHINSGTLRDY--PPLFIASILGALAEVTLNFIA 166 + + + + ++++ + Q ++ I + L + G ++ + N++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 167 QDPSQT 172 S Sbjct: 181 APQSFD 186
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 6e-10 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 1 MPKLKIALIDDDHARADYIRKSLLENDFEVVACLTLDHLNIFRLEHLQADVILLDMDHPH 60 M I + DDD A + ++L ++V L + D+++ D+ P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATL-WRWIAAGDGDLVVTDVVMPD 59 Query: 61 RDIIESCVSSY-----DLPTVLFTKNSDKDTIKQAIDAGVTAYIVDGIDPARLHTILE-I 114 + + + DLP ++ + + T +A + G Y+ D L I+ Sbjct: 60 ENAFD-LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 115 SIEQYKKHKKLEGDLKDAQ 133 E ++ KLE D +D Sbjct: 119 LAEPKRRPSKLEDDSQDGM 137
>PF04183#IucA / IucC family Length = 580 Score = 117 bits (294), Expect = 5e-30 Identities = 80/471 (16%), Positives = 164/471 (34%), Gaps = 61/471 (12%) Query: 116 ELLSLVADRPFHPFAHSK--------GELAPLTIQKEIEVYWWAFKKDDVI-NNMDSIPH 166 L L++ P F + AP ++W A K++ +I + + Sbjct: 128 RLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY-ANTFRLHWLAVKREHMIWRCDNEMDI 186 Query: 167 KELL---LSESEDNHITEKMAE--LSDDYLALPLLETQHRYL---KFEENKYEG--IDLN 216 +LL + E ++ E L ++L LP+ Q + F + EG + L Sbjct: 187 HQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVSLG 246 Query: 217 HVTTIGLPTSSLRTLIHNANP-NLHLKLSTNAKTLGAIRSMPGRYLMNGHRAYDFLNEVI 275 L SLRTL + + L +KL R +PGRY+ G A +L +V Sbjct: 247 EFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVF 306 Query: 276 NETPLLKNRLFL---------SNETHWWVLGKKEHIVKNLGVIGCQVRHLPGFCQDKNVT 326 L + + + L + + + + +G R P + + Sbjct: 307 ATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEM--LGVIWRENPCRWLKPDES 364 Query: 327 PITMSALSCIY------VDPW-ETLGVEGDKWSLLKDLSVHFIQTFLTLWSK-GIMPECH 378 P+ M+ L + + G++ + W L L + L + G+ H Sbjct: 365 PVLMATLMECDENNQPLAGAYIDRSGLDAETW--LTQLFRVVVVPLYHLLCRYGVALIAH 422 Query: 379 GQNTMVCYENNKFKCFILRD-HDTLRICTPAIEESGFTPPTYT-IDTSTPNNLIFTKNED 436 GQN + + + +L+D +R+ E P + + + + D Sbjct: 423 GQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSLPQEVRDVTSRLSADYL---IHD 479 Query: 437 LFNYFITLGIQINLYPIALATLKYTDRSESDFWEMVQDIIHDFVETQPISEHTKSQIRTY 496 L + + + E F++++ ++ D+++ P + ++ Sbjct: 480 LQTGHF-----VTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHP--QMSERFALFS 532 Query: 497 LFDNKTWPFKQLLTPL----LAQESDSTGMPSKIGTTPNPYHSLSISSYET 543 LF + + +L P+ + S +P+ + NP ++ YE+ Sbjct: 533 LF--RPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLWLVT-QEYES 580
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 94.5 bits (235), Expect = 2e-23 Identities = 80/392 (20%), Positives = 159/392 (40%), Gaps = 31/392 (7%) Query: 9 FIILLCQFFSTFGLMVLIPIMPLYMEKLTAHMSAPTIWAGLALAAPAIGSLFTAPIVGHL 68 +IL G+ +++P++P + L + G+ LA A+ AP++G L Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHY-GILLALYALMQFACAPVLGAL 66 Query: 69 SDTFGHKKALLLSLAGFCISILLMASAQHLYLFIFARILLGFCGLS-VILNAYVSYLSNE 127 SD FG + LL+SLAG + +MA+A L++ RI+ G G + + AY++ +++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDG 126 Query: 128 QQRGAAFGQLQSSVALACLCGPVLGGIFMDHWRVEILLNATAFIVVTLIVIASFLLANPV 187 +R FG + + + GPVLGG M + A A + + FLL Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGG-LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 188 KTE------AVKNKEKSKIPDFFDRTIFSWLSAGILVQAGGFGLVSCFVLYISEISQNIH 241 K E N S + + ++ ++Q G + +V++ + H Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGED---RFH 242 Query: 242 LSLSAASLT----GTIHALSWGAAF-IAATYWGKRNDDKGDSFNNFVYASLICGITIFAL 296 + ++ G +H+L+ A G+R + +I T + L Sbjct: 243 WDATTIGISLAAFGILHSLAQAMITGPVAARLGER---------RALMLGMIADGTGYIL 293 Query: 297 I-WVSNLWLILILRLIQGFCFAALIPSILHTISLKAGTQSQGKVIGISNSAFVLGQLFGP 355 + + + W+ + ++ +P++ +S + + QG++ G + L + GP Sbjct: 294 LAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352 Query: 356 ITITLTYSFFNITAALICTSLFFIGAGLVVIL 387 + T Y+ + + GA L ++ Sbjct: 353 LLFTAIYA---ASITTWNGWAWIAGAALYLLC 381
>PF04183#IucA / IucC family Length = 580 Score = 365 bits (939), Expect = e-116 Identities = 144/598 (24%), Positives = 239/598 (39%), Gaps = 48/598 (8%) Query: 600 LAENRVMSQLLEALIFENTFKYELSKGQIKFYISDKVFYTCAAKRHFSFKRIKLDPSSLV 659 L R+++++L L +E F E + A+R + + +D +L Sbjct: 8 LVNRRLVAKMLSELEYEQVFHAESQGDDRYCINLPGAQWRFIAER-GIWGWLWIDAQTLR 66 Query: 660 RSDITLGDETRPNLKMLLADLKNIIEADPVKWQNFNDELNLTYVKHAQTLSQA---PAQP 716 +D + +T LL LK ++ +L T + Q L A Sbjct: 67 CADEPVLAQT------LLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKARRGLSASD 120 Query: 717 LRTLPYLEQEARITNAHLYHPSFKSRIGFDLKENQKYAPELSEGFTVKWAATHNSLCKLV 776 L L + ++ H K R G+ + ++YAPE + F + W A Sbjct: 121 LINLNADRLQCLLS-GHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWR 179 Query: 777 LSETINLEQLYKQHFSEKDLQAISDQLKDNNVDFQEYILTPIHPWQWDKIIELYYQDAIS 836 +++ QL ++ S ++N +D ++ P+HPWQW + I + + Sbjct: 180 CDNEMDIHQLLTAAMDPQEFARFSQVWQENGLD-HNWLPLPVHPWQWQQKIATDFIADFA 238 Query: 837 SQLIIPLDIEGPTYLPQQSIRTLSNISDISALSLKLAMNLVNTSTSRVLAPHTVQNAAKM 896 ++ L G +L QQS+RTL+N S L +KL + + NTS R + + Sbjct: 239 EGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLA 298 Query: 897 SDWLYNIVEQDHILEKHRKPVILREI--GGLSVNQQIALPVQYGA----LACIWRESIYS 950 S WL + D L VIL E G +S AL L IWRE+ Sbjct: 299 SRWLQQVFATDATL-VQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCR 357 Query: 951 YLKEGESATPVTGLMQVDIDQKPLIDEWIQEYGI--EFWLEKLLTNAYLPIMHILWCHGL 1008 +LK ES + LM+ D + +PL +I G+ E WL +L +P+ H+L +G+ Sbjct: 358 WLKPDESPVLMATLMECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGV 417 Query: 1009 ALESHAQNMVLIHKNGLPVKAALKDFHDGIRFSRHLLREPDLLPNLQDAPKEHAKINPNS 1068 AL +H QN+ L K G+P + LKDF +R + E D L P+E + Sbjct: 418 ALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLVKEEFPEMDSL------PQEVRDVTSR- 470 Query: 1069 FLETHSPNELRDFTQDALWFVNLAELAIFLNEHYDFDEIKFWTMLRTIINQHKEAHPEFA 1128 + FV + L E +F+ +L +++ + + HP+ + Sbjct: 471 -----LSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMS 525 Query: 1129 ERYELFNFTDDTIDIEQLASRRF-----------LPEIRLRVQTTPNPLSLIKEIEYE 1175 ER+ LF+ I L + LP ++ NPL L+ + EYE Sbjct: 526 ERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNY---LEDLQNPLWLVTQ-EYE 579 Score = 207 bits (529), Expect = 3e-59 Identities = 93/435 (21%), Positives = 158/435 (36%), Gaps = 45/435 (10%) Query: 128 DIANSIENTKFFLENRPSQSATKALSGFQATEQGMLYGHPFHVTSKANLGFSKEDMKKYS 187 D+ ++ L+ R SA+ ++ Q +L GHP V +K G+ KE +++Y+ Sbjct: 98 DLYATLLGDLQLLKARRGLSASDLINLNADRLQCLLSGHPKFVFNKGRRGWGKEALERYA 157 Query: 188 PELGASFQLHYFAVH-SSLIEKLVSEAQASNRIEDEV----LNIAKEHLQENLA--NYEL 240 PE +F+LH+ AV +I + +E + + + QEN N+ Sbjct: 158 PEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLP 217 Query: 241 MPTHPWQANFLLQHPSLKKYLDSQEIIHLGALGQTVWPTSSVRTVWLPQS--NLFLKLSI 298 +P HPWQ + ++ LG G S+RT+ L +KL + Sbjct: 218 LPVHPWQWQQKIATD-FIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL 276 Query: 299 DVRITSFIRNNPMDEMERAIDASKI---IINHKINEQYPDLVILPELEAKTVKIPELESS 355 + TS R P + AS+ + VIL E A V Sbjct: 277 TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHE----- 331 Query: 356 FGIIYRAGLTPEVLENTRMLGGLVEENESHEIP------LLSFIQQAAPNQNLQVPEAKD 409 A L MLG + EN + L++ + + N D Sbjct: 332 ----GYAALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYID 387 Query: 410 FITF----WWKQYVKVSLIPLVELFANKGISVEAHMQNSLMEFKNGYPHRLILRDMEGIS 465 W Q +V ++PL L G+++ AH QN + K G P R++L+D +G Sbjct: 388 RSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQG-- 445 Query: 466 IVPEMIEDNSSISEDSTVWFSQKDAWTFLKYYLVINHI--------AHLISAIARVTVIE 517 +M E ++ +D + L +I+ + IS + + Sbjct: 446 ---DMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVP 502 Query: 518 ESELWQATRLTLTQE 532 E +Q L+ Sbjct: 503 ERRFYQLLAAVLSDY 517
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 5e-07 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 46 LPAA-PVAEAPVAKTPRGAVEPSPMVGVFYAAPSPGEAPFVKVGQTVSAGETLGIIEAMK 104 LPA + E PV++ PR ++G A + +V +A L K Sbjct: 42 LPAHLELIETPVSRRPRLVA--YFIMGFLVIAF--ILSVLGQVEIVATANGKLTHSGRSK 97 Query: 105 IMNPIEATQSGVVEEILVKNGDVIQFGQPLFR 136 + PIE + +V+EI+VK G+ ++ G L + Sbjct: 98 EIKPIE---NSIVKEIIVKEGESVRKGDVLLK 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 45.0 bits (106), Expect = 4e-07 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 400 QPVEVISQPAMVEPEPEPEPEPEP---EPEPEPEPEPEPEPQ 438 QP+ V P+ P EPEPEPEP PEP + Sbjct: 43 QPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 84 Score = 44.6 bits (105), Expect = 5e-07 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 379 VVALSQQTQPTAQEITPVNTVQPVEVISQPAMVEPEPEPEPEPEPEPEPE-PEPEPEPEP 437 V+ L QP + + ++P + + P EPEPEPEP PEP E P +P+P Sbjct: 35 VIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 94 Query: 438 Q 438 + Sbjct: 95 K 95 Score = 38.0 bits (88), Expect = 6e-05 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 360 PLAPNEI-VVSEPVQQNGQAVVALSQQTQPTAQEITPVNTVQPVEVISQPAMVEPEPEPE 418 P P + +V+ + QAV Q E P E + +V +P+P+ Sbjct: 41 PAQPISVTMVTPADLEPPQAV----QPPPEPVVEPEP-EPEPIPEPPKEAPVVIEKPKPK 95 Query: 419 PEPEPEPEPEPEPEPEPEP 437 P+P+P+P + + +P+ + Sbjct: 96 PKPKPKPVKKVQEQPKRDV 114 Score = 35.3 bits (81), Expect = 5e-04 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 370 EPVQQNGQAVVALSQQTQPTAQEITPVNTVQPVEVISQPAMVEPEPEPEPEPEPEPEPEP 429 Q Q + +P + I PV + +P+P+P + + +P+ + Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 114 Query: 430 EP--EPEPEPQSNQDL 443 +P P N Sbjct: 115 KPVESRPASPFENTAP 130
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 264 bits (675), Expect = 4e-85 Identities = 92/419 (21%), Positives = 187/419 (44%), Gaps = 13/419 (3%) Query: 7 ILTIIVLIYLPVTIDATVMHVATPSLSAALNLTANQLLWIIDIYSLIMAGLILPMGALGD 66 IL + ++ ++ V++V+ P ++ N W+ + L + G L D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 67 RIGFKKLLFIGTTIFGVGSLAAAFSPTAYA-LIASRALLGLGAAMLIPATLSGIRNAFTE 125 ++G K+LL G I GS+ + ++ LI +R + G GAA PA + + + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIP 133 Query: 126 EKQRNFALGLWSTVGGGGAAFGPLVGGFLLEHFHWGAVFLINIPIILVVLVMIVMIIPKQ 185 ++ R A GL ++ G GP +GG + + HW +L+ IP+I ++ V +M + K+ Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKK 191 Query: 186 EEKTDQPINLGQALVLVVAILSLIYSIKSAMYNFSVLTVVMFVVGVSALIHFIRSQKRST 245 E + ++ +++ V I+ + S +F +++V+ F++ F++ ++ T Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLI-------FVKHIRKVT 244 Query: 246 TPMIDLELFKHPVISTSIVMAVVSMIALVGFELLLSQELQFVHGFSPLQA-AMFIIPFMI 304 P +D L K+ ++ + + GF ++ ++ VH S + ++ I P + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 305 AISLGGPLAGICLNKWGLRLVSTVGILISGFSLWGLAQLNFSTDHFLAWTCMVFLGFSIE 364 ++ + G + GI +++ G V +G+ S + L +T F+ + LG Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 365 IALLASTAAIMSSVPPNKASAAGAIEGMAYELGAGLGVAIFGLMLSWFYSRSIILPEEL 423 + ST S + + ++ L G G+AI G +LS +LP E+ Sbjct: 365 TKTVISTIVSSSLKQQEAGAGMSLLNFTSF-LSEGTGIAIVGGLLSIPLLDQRLLPMEV 422
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 7e-08 Identities = 38/238 (15%), Positives = 88/238 (36%), Gaps = 35/238 (14%) Query: 82 ILKRLFAEGSYVREGQALYQLDSRTNHATLENAKAALLQQQANLASLRTKLNRYKQLVSS 141 L + + + A+ + +++ A L ++ L + +++ K+ Sbjct: 239 DFSSLLHKQAIAK--HAVLEQENK-----YVEAVNELRVYKSQLEQIESEILSAKEEYQL 291 Query: 142 NAVSRQEYDDLLGQVNVAEAQVAAAKAQVTNANVDLGYSTIRSPISGQSGRSSV-TAGAL 200 + ++L ++ + ++ S IR+P+S + + V T G + Sbjct: 292 VTQLFKN--EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 201 VTANQTDPLVTIQQLDPIYVDINQSSAELLRLRQQLSKGSLDNSNNTKVKLKLE--DGST 258 VT +T +V + + D + V + ++ + + +K+E + Sbjct: 350 VTTAET-LMVIVPEDDTLEVTALVQNKDIGFINVGQN-----------AIIKVEAFPYTR 397 Query: 259 YP-IEGQLA--FSDASVNQDTGTIT--LRAVFSN------PNHLLLPGMYTTAQIVQG 305 Y + G++ DA +Q G + + ++ N N L GM TA+I G Sbjct: 398 YGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 40.2 bits (94), Expect = 1e-05 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 5/119 (4%) Query: 56 VEQSVELSGR-TSAYQISEVRPQTSGVILKRLFAEGSYVREGQALYQLDSRTNHATLENA 114 VE +G+ T + + E++P + ++ + + EG VR+G L +L + A Sbjct: 80 VEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 115 KAALLQQQANLASLRTKLNRYKQLVSSNAVSRQEYDDLLGQVNVAEAQVAAAKAQVTNA 173 +++LLQ + + + N + + D NV+E +V + + Sbjct: 140 QSSLLQARLEQTRYQILSRS----IELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ 194
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1186 bits (3070), Expect = 0.0 Identities = 605/1048 (57%), Positives = 781/1048 (74%), Gaps = 18/1048 (1%) Query: 1 MAQFFIHRPIFAWVIALVIMLAGILTLTKMPIAQYPTIAPPTVTIAATYPGASAETVENT 60 MA FFI RPIFAWV+A+++M+AG L + ++P+AQYPTIAPP V+++A YPGA A+TV++T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQNKLQSATALLPE 120 VTQ+IEQ MNG+D L Y+SS S G +I L F+ G DPDIAQVQVQNKLQ AT LLP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 DVQRQGVTVTKSGASFLQVIAFYSPDNTLSDSDIKDYVNSSIKEPLSRVAGVGEVQVFGG 180 +VQ+QG++V KS +S+L V F S + + DI DYV S++K+ LSR+ GVG+VQ+FG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 SYAMRIWLDPAKLTNYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQVLNATVNAQSLL 240 YAMRIWLD L Y+LTP D+ L+ QN Q+A GQLGG PA+ GQ LNA++ AQ+ Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANAL 300 + PE+F + L+ + G+ VRLKDVARVELG +NY ++ NGKPA GL IK+ATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTADAVEHRLTELRKNYPAGLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQ 360 DTA A++ +L EL+ +P G+ YDTTPF++LSI VV TL EA++LVF+VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N RAT+IPT+AVPVV+LGTFA++ FG+SINTLTMF MVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEHTDPVTATSRSMEQISGALIGITSVLTAVFVPMAFFGGTTGVIYRQFSITLVTAMVL 480 E+ P AT +SM QI GAL+GI VL+AVF+PMAFFGG+TG IYRQFSIT+V+AM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SLIVALTFTPALCATILKQHDPNKEPSNNIFARFFRGFNNGFDRMSHSYQNGVSHMLKGK 540 S++VAL TPALCAT+LK P + FF FN FD + Y N V +L Sbjct: 481 SVLVALILTPALCATLLK---PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGST 537 Query: 541 IFSGVLYALVIGLLVFLFQKLPSSFLPEEDQGVVMTLVQLPPNATLDRTNKVVDTMTNFF 600 ++YAL++ +V LF +LPSSFLPEEDQGV +T++QLP AT +RT KV+D +T+++ Sbjct: 538 GRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYY 597 Query: 601 M-NEKDTVESIFTVSGFSFTGVGQNAGIGFVKLKDWSERTSPESQIGALIQRGMALNMIV 659 + NEK VES+FTV+GFSF+G QNAG+ FV LK W ER E+ A+I R + Sbjct: 598 LKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 660 KDASYIMPLQLPAMPELGVTAGFNLQLKDSSGQGHEKLIAARNTILGLASQD-KRLVGVR 718 +D +++P +PA+ ELG GF+ +L D +G GH+ L ARN +LG+A+Q LV VR Sbjct: 658 RDG-FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 719 PNGQEDTPQYQINVDQAQAGAMGVSIADINNTMRIAWGGSYINDFVDRGRVKKVYVQGDS 778 PNG EDT Q+++ VDQ +A A+GVS++DIN T+ A GG+Y+NDF+DRGRVKK+YVQ D+ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 779 GSRMMPEDLNKWYVRNSKGEMVPFSAFATGEWTYGSPRLERYNGVSSVNIQGTPAPGVSS 838 RM+PED++K YVR++ GEMVPFSAF T W YGSPRLERYNG+ S+ IQG APG SS Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 839 GDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPFLYALSLLIVFLCLAALYE 898 GD+M ME + +KLP G Y+WTG+S +ER SG QAP L A+S ++VFLCLAALYE Sbjct: 837 GDAMALMENLASKLP----AGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYE 892 Query: 899 SWSIPFSVLLVVPLGIIGAIVLTYLGMIIKGDPNLSNNIYFQVAMIAVIGLSAKNAILIV 958 SWSIP SV+LVVPLGI+G ++ L N N++YF V ++ IGLSAKNAILIV Sbjct: 893 SWSIPVSVMLVVPLGIVGVLLAATLF-------NQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 959 EFAKELQEK-GEDLLDATLHASKMRLRPIIMTTLAFGFGVLPLALSTGAGAGSQHSVGFG 1017 EFAK+L EK G+ +++ATL A +MRLRPI+MT+LAF GVLPLA+S GAG+G+Q++VG G Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 1018 VLGGVLSATFLGIFFIPVFYVWIRSIFK 1045 V+GG++SAT L IFF+PVF+V IR FK Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRCFK 1033
>PF03309#Bvg accessory factor Length = 271 Score = 27.4 bits (61), Expect = 0.021 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 35 EKEQRLAHIRIDTNRFATSDQLGHFISSNVVISHDYFKYVLASIKNVLGGRLTSYESVVE 94 + + + RI T T+D+L I +I D + AS + + L ++E Sbjct: 22 DHAKVVQQWRIRTEPEVTADELALTIDG--LIGDDAERLTGASGLSTVPSVLHEVRVMLE 79 Query: 95 R 95 + Sbjct: 80 Q 80
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.4 bits (216), Expect = 1e-22 Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 1/189 (0%) Query: 7 LQNKVVWITGASSGLGKALAGELALQGAEVILTSRRFDELEAVRVGLLNPDQHLSVV-AD 65 ++ K+ +ITGA+ G+G+A+A LA QGA + ++LE V L +H AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 66 ITDEKQVQEAYEQILKAKGRIDWLINNAGLSQRALIEDTTMATERAIMEVDYFSQVALTK 125 + D + E +I + G ID L+N AG+ + LI + A V+ ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 126 TVLPTMLKQKSGRVVFVSSVAGLLGTQYRASYSAAKAAIHMWANSLRAEVSDQGVEVSVI 185 +V M+ ++SG +V V S + A+Y+++KAA M+ L E+++ + +++ Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 186 FPGFVKTNV 194 PG +T++ Sbjct: 186 SPGSTETDM 194
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.004 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 101 GGIAERAKMRSQAIATLALVALVYP---FFEGMVWNGNYGLQKWLETTFGAAFHDFAGSV 157 G A+ QAI A + V+P + + W+ L+KWL G D+ Sbjct: 510 GTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRR 569 Query: 158 V--VHAMGGWIALAAV 171 + + +G +I + V Sbjct: 570 LRYLQLVGKYILMGHV 585
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 3/139 (2%) Query: 2 TKILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGM 61 IL+ +DD I L ++V +N +A DL++ D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QVLKQIRQRAA-TPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSG 120 +L +I++ PVL++SA++ + GA DYL KP++ EL+ I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE-- 121 Query: 121 VEAQLANHEQLLQSGDLVL 139 + + + E Q G ++ Sbjct: 122 PKRRPSKLEDDSQDGMPLV 140
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.0 bits (65), Expect = 0.047 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 11/82 (13%) Query: 44 YFGVKAIFFLAATVIIVVAAYYAILQILNWKWTAKVVAIILVIVGGFSAYFVNTLGIVIS 103 F + A+ L V++ V +A+LQ+ K+ VA +L I G Y +N +V+ Sbjct: 177 QFALGAVVALVHDVLLTV-GLFAVLQL---KFDLTTVAALLTITG----YSIND-TVVVF 227 Query: 104 PDQI-QNMVQTDTAEISDLISL 124 D++ +N+++ T + D+++L Sbjct: 228 -DRLRENLIKYKTMPLRDVMNL 248
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 34.9 bits (80), Expect = 5e-04 Identities = 12/32 (37%), Positives = 14/32 (43%) Query: 51 IQQQSQVQQQQQQVQQQQQVQLAEVKAQPVAA 82 I + Q QQ Q Q Q Q A+ AQ A Sbjct: 330 IHLNFVMPPQAQQQQGQGQQQQAQATAQEAVA 361 Score = 30.7 bits (69), Expect = 0.014 Identities = 12/30 (40%), Positives = 13/30 (43%) Query: 53 QQSQVQQQQQQVQQQQQVQLAEVKAQPVAA 82 QQQQ QQQQ Q +A AA Sbjct: 335 VMPPQAQQQQGQGQQQQAQATAQEAVAAAA 364 Score = 30.3 bits (68), Expect = 0.016 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Query: 47 LKALIQQQSQVQQQQQQVQQQQQVQLAEVKAQPVAAPVSPLAG 89 L ++ Q+Q QQ Q Q QQQ Q E A AA V L G Sbjct: 332 LNFVMPPQAQQQQGQGQ-QQQAQATAQEAVA---AAAVRLLNG 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 3e-18 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 1378 IMIVDDSVTVRKVTTRLLERQGYDVVTAKDGIDAIEQLENIKPDLMLLDIEMPRMDGFEV 1437 I++ DD +R V + L R GYDV + + DL++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1438 LNLVRHHDLHQDMPVIMITSRTGEKHRERAFTLGVNQYMGKPFQEEDLLHNIDAFFTTRE 1497 L ++ +PV++++++ +A G Y+ KPF +L+ I + Sbjct: 66 LPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 1498 EELA 1501 + Sbjct: 124 RRPS 127
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.8 bits (69), Expect = 0.019 Identities = 22/228 (9%), Positives = 62/228 (27%), Gaps = 10/228 (4%) Query: 452 STAMNEMAQSIDQVSSNASESTEVAERSVQIASNGAQVVNRSIEGMDTIREQIQETSKRI 511 + + + Q S NA++ +A Q +N +++ + + Q + Sbjct: 50 ANRFTSNIKGLTQASRNANDGISIA----QTTEGALNEINNNLQRVRELSVQATNGTNSD 105 Query: 512 KRLGESSQEIGNIVSLINDIADQT-----NILALNAAIQASMAGEAGRGFAVVADEVQRL 566 L EI + I+ +++QT +L+ + ++ + G + ++ Sbjct: 106 SDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVK 165 Query: 567 AERSASATKQIETLV-KTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGD 625 + + + V + + + D D Sbjct: 166 SLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPD 225 Query: 626 LANLMANISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVS 673 + A + + + + T + A + Sbjct: 226 KVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGK 273
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 3e-22 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 2 TRILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGF 61 IL+ DD + L++ GYDV SN A A DLV+ DVVMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFL 119 +I + +PV+++S ++ + +GA DYL KP + +LI +I + L Sbjct: 64 DLLPRI-KKAR-PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 2e-20 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 9 KVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQ 68 ++V DD IR L R G +V + IA + D+V D++MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 TCALIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVS 126 IK + ++PV+++S+++ K G+ +YL KPF EL+ I ++ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 2e-09 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 49/220 (22%) Query: 99 RLNNQDNVARLAQARANLASAQSQAELARNLMNRKQRLFNQGFIARVEF---EQSQVDYK 155 LN A A + ++ + + ++ ++ L ++ IA+ E V+ Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 156 GQLESVKAQ-------------------------------QANVDIA------RKADQDG 178 +L K+Q Q +I K ++ Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 179 ---IITSPISGVITKRQV-EPGQTVSVGQTLFEIV-NPDQLEIQAKLPIEQQSALKVGNS 233 +I +P+S + + +V G V+ +TL IV D LE+ A + + + VG + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQN 385 Query: 234 IQYQI----QGNSKQLNATLTRISPVADQDSRQIEFFAVP 269 ++ L + I+ A +D R F V Sbjct: 386 AIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVI 425 Score = 38.3 bits (89), Expect = 3e-05 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 52 GALDSQTAFTGTIRAVQQS-SIQAQVSATATTVTTNVGQQVQKGQVLVRLNNQDNVARLA 110 G ++ G + +S I+ ++ + G+ V+KG VL++L Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA-------L 130 Query: 111 QARANLASAQSQAELARNLMNRKQRLFNQGFIARVEFEQSQVDYKGQLESVKAQQA 166 A A+ QS AR R Q L I + + ++ + ++V ++ Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRS--IELNKLPELKLPDEPYFQNVSEEEV 184
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 787 bits (2033), Expect = 0.0 Identities = 289/1039 (27%), Positives = 492/1039 (47%), Gaps = 36/1039 (3%) Query: 5 RISVKYPVFTIMMMISLMVLGLASWKRMTVEEFPNIDFPFVVVTTEYAGASPEAVESDIT 64 ++ P+F ++ I LM+ G + ++ V ++P I P V V+ Y GA + V+ +T Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 KKLEDQINTISGIKQITSRS-SEGFSMVVAEFNLDTSSAIAAQDVRDKIAPVAAQFRDEI 123 + +E +N I + ++S S S G + F T IA V++K+ E+ Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 DTPIVQRYDPSSSPIMSVVFESTSMNLAQ--LSSYVDKRIVPQLKTVSGVGNVNLLGDAK 181 + SSS +M F S + Q +S YV + L ++GVG+V L G A+ Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQ 181 Query: 182 RQIRIKILPEQLQSYGIGIDQVINTLKNENIEVPAGTL------QQKNSELVVQIQSKVI 235 +RI + + L Y + VIN LK +N ++ AG L + + Q++ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 HPLAFGDLVI-ANKNGSPIFLKQVATVEDTQAELQSSAFYNGKTAVSIDILKSSDANVIQ 294 +P FG + + N +GS + LK VA VE A NGK A + I ++ AN + Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 VVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVARTIIEGAALAVLIVLLFLGS 354 L +L+ P G+ D++ ++ SI +V +T+ E L L++ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 FRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVVRENIVRH-T 413 R+T+I + +P+ LLGT + AFG+SIN +T+ + L+IGLL+DDAIVV EN+ R Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 414 ELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLIS 473 E A + +I A++ + + AVF+P+AF GG G + QF +T+ +A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 MFISFTLDPMLSAHWKDPVKKKD-NWLQRFFDHISNLLDRLSHVYERLLKLALRFRFITV 532 + ++ L P L A PV + FF + D + Y + L + Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 533 IIAIASLFAALGLSKLIGTEFVPTPDKGEIRIQFETPVDASLEYTQAKLHQVDQII--RQ 590 +I + + L + + F+P D+G + P A+ E TQ L QV + Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 591 FPDVVSTYGVVNSGVDSGKNRAGLG-VTLKPKQQRNKELNALNNEFRDRLQTVAGIRVTS 649 +V S + V AG+ V+LKP ++RN + N+ + IR Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 650 VAAAQDS------VSGGQKPIMISIKGTDLNELQKISDRFIAEMEK-IKGVVDLESSLKE 702 V + G +I G + L + ++ + + +V + + E Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 703 PKPTLGVHINRILASDLGLSVSQIANAIRPLIAGDNVTTWEDRDGENYDVNVRLNENKRM 762 + +++ A LG+S+S I I + G V + D G + V+ + RM Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFRM 780 Query: 763 LPQDVQNLYLNSNKTNANANGQNILVPLSAVATTEEKLGASQINRRDLEREVLIEAN-TS 821 LP+DV LY+ +ANG+ +VP SA T+ G+ ++ R + + I+ Sbjct: 781 LPEDVDKLYV------RSANGE--MVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP 832 Query: 822 GRPSGDIGQDIDKMQKAFKLPAGYTFDTQGANADMAESAGYALTAITLSIVFIYIVLGSQ 881 G SGD ++ + KLPAG +D G + S A + +S V +++ L + Sbjct: 833 GTSSGDAMALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 882 FNSFIHPAAIMASLPLSLIGVFLALFLFQSTLNLFSIIGIIMLMGLVTKNAILLIDFIKK 941 + S+ P ++M +PL ++GV LA LF +++ ++G++ +GL KNAIL+++F K Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 942 AMD-QGVSRYDAILQAGKTRLRPILMTTSAMVMGMVPLALGLGEGGEQSAPMAHAVIGGV 1000 M+ +G +A L A + RLRPILMT+ A ++G++PLA+ G G + V+GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 1001 ITSTLLTLVVVPVIFTYLD 1019 +++TLL + VPV F + Sbjct: 1011 VSATLLAIFFVPVFFVVIR 1029
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 127 bits (320), Expect = 7e-41 Identities = 68/142 (47%), Positives = 95/142 (66%), Gaps = 10/142 (7%) Query: 1 MSIIQEFKEFAVKGNMMDLAIGVIIGGAFGKIVDSLVKDIIMPLITVITGGGVDFSQKFI 60 MSII+EF+EFA++GN++DLA+GVIIG AFGKIV SLV DIIMP + ++ GG+DF Q + Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLI-GGIDFKQFAV 59 Query: 61 VLGANPANLQSLDALQKAGINVLTYGNFLTILINFIILAWVVFLMVKLLNRLRRDKNEPE 120 L DA V+ YG F+ + +F+I+A+ +F+ +KL+N+L R K EP Sbjct: 60 TLR---------DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPA 110 Query: 121 APAATPEDIQLLREIRDELKKQ 142 A A ++ LL EIRD LK+Q Sbjct: 111 AAPAPTKEEVLLTEIRDLLKEQ 132
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 166 bits (423), Expect = 2e-46 Identities = 101/442 (22%), Positives = 177/442 (40%), Gaps = 69/442 (15%) Query: 6 NLRNIAIIAHVDHGKTTLVDKLLQQSGALGDRAGEIER---VMDSNALESERGITILAKN 62 + NI ++AHVD GKTTL + LL SGA+ G +++ D+ LE +RGITI Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAI-TELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 63 TSITWLDKRTDTTYRINIVDTPGHADFGGEVERVLSMVDCVLLLVDAQEGPMPQTRFVTQ 122 TS W + ++NI+DTPGH DF EV R LS++D +LL+ A++G QTR + Sbjct: 61 TSFQWEN------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 123 KAFARGLKPIVIINKVDKPSARPDWVIDQVFD-------------LFDNLGATD----EQ 165 G+ I INK+D+ V + + L+ N+ T+ EQ Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQ 174 Query: 166 LDFPIVYASGL--RGVAGPAP--EELAEDMT-----------------------PLFETI 198 D I L + ++G + EL ++ + L E I Sbjct: 175 WDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVI 234 Query: 199 VDIVEPPAVDADGPFQMQISSLDYNSFVGVIGVGRIQRGSVKLNTPVTVIDKEGNTRNGR 258 + ++ ++Y+ + R+ G + L V + +KE + Sbjct: 235 TNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI----K 290 Query: 259 ILKIMGYHGLERIDVDSASAGDIVCITGIDALNISDTICDPKNVEALPALSVDEPTVSMT 318 I ++ E +D A +G+IV + + L ++ + D K + + P + T Sbjct: 291 ITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTT 349 Query: 319 FQVNNSPFAGKEGKFVTSRNIRERLDRELIHNVALRVEDTDSPDRFKVSGRGELHLSVLI 378 + + + + + L LR + +S G++ + V Sbjct: 350 VEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKVQMEVTC 400 Query: 379 ENMRRE-GFEMGVSRPQVIMKE 399 ++ + E+ + P VI E Sbjct: 401 ALLQEKYHVEIEIKEPTVIYME 422 Score = 41.0 bits (96), Expect = 1e-05 Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 1/88 (1%) Query: 406 EPYENVTFDVEEQHQGSVMEQMGFRKGEMTNMEVDGKGRIRIEATVPSRGLIGFRSEFLT 465 EPY + +++ + + ++ + + +P+R + +RS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTF 595 Query: 466 MTSGTGIMTSSFSHYGPAKAGTVAKRQN 493 T+G + + Y V + + Sbjct: 596 FTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 135 bits (342), Expect = 4e-39 Identities = 84/363 (23%), Positives = 146/363 (40%), Gaps = 41/363 (11%) Query: 1 MKLSRIALAMLVAAPLAAANAGVTVTPLLLGYTFQDSQHNNGGKDGELTNGPELQDDLFV 60 MK + IA+A+ +A A A G SQ+++ G NGP ++ L Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINN--NGPTHENQLGA 58 Query: 61 GAALGIELTPWLGFEAEY-----SQVKGDVDTNYGEYKQKQINGNFYVTSDLITKNYDSK 115 GA G ++ P++GFE Y KG V+ + + Q+ IT + D Sbjct: 59 GAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAK---LGYPITDDLDI- 114 Query: 116 IKPYVLLGAGHYKYEFDDARLAYRDGEEGTLGNAGFGAFWRLNDALSLRTEARGTYNF-- 173 Y LG ++ + ++ + G G + + ++ R E + T N Sbjct: 115 ---YTRLGGMVWRADTKSNVYG-KNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGD 170 Query: 174 ----DEKFWNYTALAGLNVVLGGHLKPAAPVVEVAPVEPTPVAPQPQELTEDLNMELRVF 229 + N G++ G AAPVV AP V T+ ++ V Sbjct: 171 AHTIGTRPDNGMLSLGVSYRFGQ--GEAAPVVAPAPAPAPEVQ------TKHFTLKSDVL 222 Query: 230 FDTNKSNIKDQYKPEIAKVAEKLTEY--PNATARIEGHTDNTGPRKLNERLSLARANSVK 287 F+ NK+ +K + + + ++ +L+ + + + G+TD G N+ LS RA SV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 288 SALVNEYNVDASRLSTQGFAWDQPIADNKT---------KEGRAMNRRVFATITGSRTVV 338 L+++ + A ++S +G P+ N + A +RRV + G + VV Sbjct: 283 DYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVV 341 Query: 339 VQP 341 QP Sbjct: 342 TQP 344
>PilS_PF08805#PilS N terminal Length = 185 Score = 31.4 bits (71), Expect = 0.001 Identities = 11/50 (22%), Positives = 25/50 (50%) Query: 6 GFTLMELIITLAILMIMFTIALPLYHQFMASVELKNTPRLLTIHIQKAKY 55 G TLME+++ + +++++ A LY ++++ N + I K Sbjct: 27 GATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLTVIANMKS 76
>PF06580#Sensor histidine kinase Length = 349 Score = 26.4 bits (58), Expect = 0.014 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%) Query: 11 ILGWKF--VLIVGVLSAIFLGFFYLAMSNEPDYMPGAQRKAQQEQMQQKAE 59 L F V++ + S Y +Y + + M Q+A+ Sbjct: 117 ALSIIFNVVVVTFMWSL-----LYFGWHFFKNYKQAEIDQWKMASMAQEAQ 162
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 2e-06 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 65 SVGRVAVLMPYRKQGIGKILMEHIIDYARQQNLPYLKLSAQTYVTA---FYEALGFVVQG 121 + +AV YRK+G+G L+ I++A++ + L L Q + FY F++ Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.009 Identities = 72/376 (19%), Positives = 136/376 (36%), Gaps = 50/376 (13%) Query: 64 LATFAIA-FIARPIGAALFGHLGDRIGRKATLVAALLTMGISTVCIGLLPTYAQIGLAAP 122 LA +A+ F P+ G L DR GR+ L+ +L + + P Sbjct: 49 LALYALMQFACAPVL----GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW------- 97 Query: 123 LLLAVCRLGQGLGLGGEWSGAVLLATENAPEGKRA-WYGMFPQLGAPIGFILATGSFL-- 179 +L + R+ G+ G + A + +RA +G + A GF + G L Sbjct: 98 -VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGF---MSACFGFGMVAGPVLGG 152 Query: 180 LLGAAIPEQAFMQWGWRIPFIASAVLVIVG-LYIRLKLHETPAFQKVLDKQKEVN----I 234 L+G P PF A+A L + L L E+ ++ +++ +N Sbjct: 153 LMGGFSP---------HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF 203 Query: 235 PFKEVLTKHTGKLVLGTIAAICTFV---VFYLTTVFALNWATTKLGYARGEFLELQLFAT 291 + +T + + I + V ++ + +W T +G + L F Sbjct: 204 RWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGIS------LAAFGI 257 Query: 292 LCFAAFIPLSAIFAEKFGRKATSIGVCIAAAIFGLFFSSMLESG-NTLIVFLFLCTGLSI 350 L A ++ A + G + ++ + + A G + G + + L +G Sbjct: 258 LHSLAQAMITGPVAARLGER-RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG 316 Query: 351 MGLTYGPIGTVLSELFPTSVRYTGSALTFNLAGIFGASFAPLIATKLAETYGLYAVGYYL 410 M + + E ++ + +ALT +L I G PL+ T + G+ Sbjct: 317 MPALQAMLSRQVDEERQGQLQGSLAALT-SLTSIVG----PLLFTAIYAASITTWNGWAW 371 Query: 411 TAASLLSLIAFLFIRE 426 A + L L+ +R Sbjct: 372 IAGAALYLLCLPALRR 387
>SECA#SecA protein signature. Length = 901 Score = 1217 bits (3150), Expect = 0.0 Identities = 530/909 (58%), Positives = 679/909 (74%), Gaps = 12/909 (1%) Query: 1 MLASLIGGIFGTKNERELKRMRKIVEQINALEPTISALSDADLSAKTPEFKQRYNNGESL 60 ML L+ +FG++N+R L+RMRK+V INA+EP + LSD +L KT EF+ R GE L Sbjct: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60 Query: 61 DKLLPEAFAVCREAAKRVMGMRHYDVQLIGGITLHEGKIAEMRTGEGKTLMGTLACYLNA 120 + L+PEAFAV REA+KRV GMRH+DVQL+GG+ L+E IAEMRTGEGKTL TL YLNA Sbjct: 61 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120 Query: 121 LSGEGVHVITVNDYLAQRDAELNRPLFEFLGLSIGTIYSMQGPSEKAEAYLADITYGTNN 180 L+G+GVHV+TVNDYLAQRDAE NRPLFEFLGL++G K EAY ADITYGTNN Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180 Query: 181 EFGFDYLRDNMVFSLAEKKQRGLHYAIIDEVDSILIDEARTPLIISGQSEDSSHLYAAIN 240 E+GFDYLRDNM FS E+ QR LHYA++DEVDSILIDEARTPLIISG +EDSS +Y +N Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240 Query: 241 TIPPRLRPQK---EEKVADGGHFWIDEKQRSVEMTEIGYETVEQELIQMGLLAEGESLYS 297 I P L Q+ E GHF +DEK R V +TE G +E+ L++ G++ EGESLYS Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 298 ATNLSLVHHVSAAIRAHFLFQRDVHYIIHDGEVVIVDEHTGRTMPGRRWSEGLHQAVEAK 357 N+ L+HHV+AA+RAH LF RDV YI+ DGEV+IVDEHTGRTM GRRWS+GLHQAVEAK Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360 Query: 358 EGLEIQPENQTLATTTFQNYFRLYKKLSGMTGTADTEAAEMKEIYGLDVVIIPTHRPMVR 417 EG++IQ ENQTLA+ TFQNYFRLY+KL+GMTGTADTEA E IY LD V++PT+RPM+R Sbjct: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420 Query: 418 NDQNDLIYLNRNGKYDAIIQEITNIREQGVAPILIGTATIEASEILSSKLMQAGIHHEVL 477 D DL+Y+ K AII++I +G P+L+GT +IE SE++S++L +AGI H VL Sbjct: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKG-QPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 478 NAKQHEREADIIAQAGSPNAVTIATNMAGRGTDIILGGNWKAKLAKLENPTAEDEARLKA 537 NAK H EA I+AQAG P AVTIATNMAGRGTDI+LGG+W+A++A LENPTAE ++KA Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 538 QWEQDHEDVLQSGGLHIIGSERHESRRIDNQLRGRAGRQGDPGVSRFYLSLEDDLMRIFA 597 W+ H+ VL++GGLHIIG+ERHESRRIDNQLRGR+GRQGD G SRFYLS+ED LMRIFA Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 598 GDRVVGMMRAMGLQENEAIEHKMVSRSIENAQRKVEARNFDIRKNLLKYDDVNNEQRKII 657 DRV GMMR +G++ EAIEH V+++I NAQRKVE+RNFDIRK LL+YDDV N+QR+ I Sbjct: 600 SDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAI 659 Query: 658 YSQRDEVLAENTLKEYVEEMHHEVMKGVIANFIPPESIHDQWDVEGLENALRIDLGIELP 717 YSQR+E+L + + E + + +V K I +IPP+S+ + WD+ GL+ L+ D ++LP Sbjct: 660 YSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLP 719 Query: 718 IQEWLDQDRRLDEEGLVERISDEVIERYRQRRAQMGDESAAMLERHFVLNSLDRHWKDHL 777 I EWLD++ L EE L ERI + IE Y+++ +G E E+ +L +LD WK+HL Sbjct: 720 IAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHL 779 Query: 778 AAMDYLRQGIHLRGYAQKNPEQEYKKEAFNLFVNMLGIIKTDVVTDLSRVHIPTPEELAE 837 AAMDYLRQGIHLRGYAQK+P+QEYK+E+F++F ML +K +V++ LS+V + PEE+ E Sbjct: 780 AAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEE 839 Query: 838 MEAQQQQQAESMKLSFEHDDVDGLTGEVTLSQETMNESADQQTFPVPESRNAPCPCGSGL 897 +E Q++ +AE + + + + + ++ +++ RN PCPCGSG Sbjct: 840 LEQQRRMEAERLA---QMQQLSHQDDDSAAAAALAAQTGERKV-----GRNDPCPCGSGK 891 Query: 898 KYKQCHGKI 906 KYKQCHG++ Sbjct: 892 KYKQCHGRL 900
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.4 bits (118), Expect = 1e-08 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 8/175 (4%) Query: 13 TLMFPLALVLFEFAVYIGNDLIQPAMLAITEDFGVSATWAPSS---MSFYLLGGASVAWL 69 L+ L+ V + +G LI P + + D S ++ Y L + A + Sbjct: 6 PLIVILSTVALDA---VGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPV 62 Query: 70 LGPLSDRLGRKKVLLTGVLFFALCCFLILLTRQMEHFLTLRFLQGIGLSVISAVGYAAIQ 129 LG LSDR GR+ VLL + A+ ++ + R + GI + + G A I Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIA 121 Query: 130 ESFAERDAIKVMALMANISLLAPLLGPVLGAFLIDYVSWHWGFVAIAVLALLSWV 184 + + + M+ + GPVLG + S H F A A L L+++ Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFL 175
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 29.3 bits (65), Expect = 0.003 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%) Query: 6 LLIVCSLAMLTACAPAKNSSAQLADSPIQAVLLDQPDLLNDASNLDISQQMNATDDPSNA 65 LL++ + A+L AC+ +S D+P+ A + L S D++ Q+N D S+ Sbjct: 15 LLMLGTAALLAACSNEADSLTTSIDAPVTASI-----DLQSVSYTDLATQLN---DVSDF 66 Query: 66 QVTILQTDPSEDAITKVR 83 I+ D + V Sbjct: 67 GKMIILKDNGFNRQVHVS 84
>PF05860#haemagglutination activity domain. Length = 117 Score = 25.9 bits (57), Expect = 0.034 Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 41 QPEIVKEHNNTSVQQVFNRVESPTVSRI 68 +N T++Q + +RV +VS I Sbjct: 45 TSGTAFFNNPTNIQNIISRVTGGSVSNI 72
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.020 Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 9 VFLVVVAILMVWSFVLTKFWVKRLAKNRKSSKFEFAYLFAVVFSISALFFPFT 61 V V I MVW T W N K F +++F++ + F ++ Sbjct: 80 VLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWS 132
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 47.6 bits (113), Expect = 9e-10 Identities = 19/66 (28%), Positives = 38/66 (57%) Query: 1 MLKNGSHQGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRTDVQAEMLRINQRLQSYK 60 M +GFTL+E+M+V+ II +LA++ P+ K + ++ ++++ + L YK Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 61 VVNHSF 66 + NH + Sbjct: 61 LDNHHY 66
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 55.3 bits (133), Expect = 2e-12 Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 1 MKKNMGFTLIELMIVVMIVAVFAAIAIPSYQAQIRRADTAAVQQELLKLAGQLERYKSQN 60 K GFTL+E+M+V++I+ V A++ +P+ +AD +++ L L+ YK N Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 61 FSY 63 Y Sbjct: 64 HHY 66
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 36.4 bits (84), Expect = 5e-05 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 1 MNKIYIQQGFTLVEFMVAIV-LGLLITAAATQLFLTGQISLNTQRAMADLQ 50 M Q+GFTL+E MV IV +G+L + L + + + Q+A++D+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNL-MGNKEKADKQKAVSDIV 50
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 38.3 bits (89), Expect = 2e-06 Identities = 13/34 (38%), Positives = 21/34 (61%) Query: 1 MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPSFT 34 MR Q GFTL+E+MV I ++ ++A + P+ Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLM 34
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.5 bits (237), Expect = 3e-25 Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 2/177 (1%) Query: 13 VQDKVILVTGASSGIGLTISNKLADAGAHVLLVARTEETLEEVKADIESRGGKASIFPCD 72 ++ K+ +TGA+ GIG ++ LA GAH+ V E LE+V + +++ A FP D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 73 LNDMDTIDQVSKEILATVDHIDILINNAGRSIRRAVHESYDRFHDFERTMQLNYFGAVRL 132 + D ID+++ I + IDIL+N AG +H D ++E T +N G Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSD--EEWEATFSVNSTGVFNA 123 Query: 133 VLNILPHMIQRKDGQIINISSIGVLANATRFSAYVASKAALDAFSRCLSAEVHAHKI 189 ++ +M+ R+ G I+ + S T +AY +SKAA F++CL E+ + I Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (252), Expect = 1e-26 Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 ILV DDD +RT+L + L G+ V+ +A+ + R + L+V D ++P E+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVL---RR 138 + R++++ D P+++++A+ + I E GA DYLPKPF+ EL+ I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 139 QVREVPGAPSQQVEVV 154 + ++ + +V Sbjct: 125 RPSKLEDDSQDGMPLV 140
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.015 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Query: 32 ETDIFRKVSQQDDLFLVAIKDEQLIG--TLMGGYDGHRGWINYLAVHPHQQRLGIATALV 89 + V ++ + + IG + ++G I +AV ++ G+ TAL+ Sbjct: 53 DDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNG-YALIEDIAVAKDYRKKGVGTALL 111 Query: 90 QQLEKRLIARGCPKLQLLVRKDNLNVLNFYEQLGY 124 + + L L + N++ +FY + + Sbjct: 112 HKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.1 bits (70), Expect = 8e-04 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 10/114 (8%) Query: 21 ERLYDTSPEFGDGHDAIEQLEQDLQQYTTLYTAEFNTKIIGAM-WSSGQGESKVLEYIVV 79 E + P F D + ++ + IG + S ++E I V Sbjct: 39 EERFS-KPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAV 97 Query: 80 HPANRGRGVAERLVEEACRIEESKGV--------KIFEPGCGAIHRCLAHIGKL 125 R +GV L+ +A + I C + IG + Sbjct: 98 AKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 28.1 bits (62), Expect = 0.015 Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 73 LSNDNGDIPIIFPNTFKMNNNFVSNGNLVFEIGKETHFIGH 113 +S+ G I +I T +M N + N+ IG T F GH Sbjct: 61 VSDRTGKINVIQDYTHQMGNLLIQQANINGTIGYHTRFSGH 101
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.007 Identities = 12/41 (29%), Positives = 16/41 (39%) Query: 135 GGNGYQNNNNQGGGYNQNSGGGYGSNPAGFGNGGNSPQGGG 175 G G ++ + N GGG GS G G+ GG Sbjct: 28 GVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 90.7 bits (225), Expect = 7e-22 Identities = 73/380 (19%), Positives = 145/380 (38%), Gaps = 10/380 (2%) Query: 8 RSTFALSSIFALRMLGLFMIIPVFSVVGQSYQYAT--PALIGLAVGVYGLSQAILQIPFS 65 R + S AL +G+ +I+PV + + ++ A G+ + +Y L Q Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 66 LLADRFSRKPLVVLGLLLFAIGGAIAGLSDTIYGVIIGRAIAG-AGAVSAVVMALLADVT 124 L+DRF R+P++++ L A+ AI + ++ + IGR +AG GA AV A +AD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 125 REEQRTKAMAAMGMSIGLSFVVAFSLGPWLTSIVGISGLFFVTTIMGLIAILMLLLVPKV 184 ++R + M G V LG + + F + GL + L+P+ Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 185 TRHHRNYQQGYMAQLKQVIQMGDLNRLHVSVFALHLLLTAMFIYVPSQLIEFAHIPLA-S 243 + R + + + ++ A+ ++ + + + F Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 244 HGLVYLPLLVISLFFAFPSIIVAEKYRKMRGIFLTAITGIIA---GLLLLIFGYQSKYVL 300 + + L + + ++ G + G+IA G +LL F + Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 301 LAGLGIFFIAFNVMEALLPSWLSKCAPIQSKATAMGVNASSQFLGAFFGGTLGGQLLMLH 360 + + + + L + LS+ + + G A+ L + G L + Sbjct: 305 P--IMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Query: 361 -NTAIGWSVLTGIAIIWLLI 379 T GW+ + G A+ L + Sbjct: 363 ITTWNGWAWIAGAALYLLCL 382
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.5 bits (172), Expect = 2e-16 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 1/195 (0%) Query: 13 VLITGASSGIGKAYAQKLASLGIHLILTARSEQKLNDLADELRKKYNVNVEVIVLDLAQA 72 ITGA+ GIG+A A+ LAS G H+ + +KL + L K + E D+ + Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL-KAEARHAEAFPADVRDS 69 Query: 73 NSAQILFDEVQARKLSVEILINNAGFGKWTKFLDQSVSTYQEMITLNISSVTSLCYLFLP 132 + + ++ ++IL+N AG + S ++ ++N + V + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 133 HMLANKKGIMINISSTGAFQPLPYIAVYGASKSYVLQFTEALAGEYSSSGVKFLAVCPGN 192 +M+ + G ++ + S A P +A Y +SK+ + FT+ L E + ++ V PG+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 193 TETNFTQVANADTSG 207 TET+ AD +G Sbjct: 190 TETDMQWSLWADENG 204
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.0 bits (189), Expect = 9e-19 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 3/202 (1%) Query: 2 KNFKNKVAAITGAGSGIGQQLAILLAKQGCHLSLSDINEKGLQQTVELLKPYSTITVTTK 61 K + K+A ITGA GIG+ +A LA QG H++ D N + L++ V LK + Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR-HAEAF 62 Query: 62 KLDVSDREAVKQWAQETVQDHGSVNLIFNNAGVALGSTVEGATYEDLEWIVGINFWGVVY 121 DV D A+ + ++ G ++++ N AGV + + E+ E +N GV Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 122 GTKEFLPFIKQTQDGHIINISSLFGLTAQPTQSAYNATKFAVRGFTESLRQELDIEKSGV 181 ++ ++ + G I+ + S + + +AY ++K A FT+ L EL + + Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL--AEYNI 180 Query: 182 SSLCVHPGGIRTNIAKSAKMSD 203 V PG T++ S + Sbjct: 181 RCNIVSPGSTETDMQWSLWADE 202
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 5e-14 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 5/175 (2%) Query: 27 SERKEARREKLIEAGIATYGTLGFFSVTVKDVCQEAKLTERYFYESFKKSEDLFQTIFLK 86 + + R+ +++ + + G S ++ ++ + A +T Y FK DLF I+ Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 87 MIEELQQNLMQAVIKATPDPEKMVDAGLRALLTTLKDDPRLARIVYVDAVLVQELHNQAT 146 + + ++ K DP ++ L +L + + R ++ + + + A Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 147 IQETLAQFD-RMIQAFVMLTMPQIQHNE----NELSLIATGLNGYVTQIAIRWVM 196 +Q+ I+ A + GY++ + W+ Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.2 bits (203), Expect = 3e-20 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65 IL+ DD+ IR +++ +L AG+ +A + I L++ D ++P + D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE-NAFD 64 Query: 66 LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 L R+K+ ++PV++++A+ ++ + GA DY+ KPF EL+ I L Sbjct: 65 LLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 126 NAL 128 Sbjct: 123 KRR 125
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.004 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 26/105 (24%) Query: 347 LITNAIKY----TPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDR 402 L+ N IK+ P+GG I + D V++TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK----------------- 305 Query: 403 SRQTGGTGLGLAIVKH---VLMQHGAYLDVQSKENEGSTFTVVFP 444 TG GL V+ +L A + + K+ + V+ P Sbjct: 306 -NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV-NAMVLIP 348
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.6 bits (63), Expect = 0.033 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 9/119 (7%) Query: 35 PAPAMKEAAKQFTNKTGIAVHVTSGPTSQWSDKAKLDADVIYSGSEAMMSDF------EN 88 PA M E ++ GIA V + T +D + AD +EA + +F + Sbjct: 358 PAHVMDENGYPI-HRPGIA-GVETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDE 415 Query: 89 AFSEQIIKDSVEPLYLRPAAILVRKGNPKNIKGFKDLAKSNIKVLVTHGAGQVGMWEDI 147 ++QI+KD++ + P + VR+ PK ++ DL ++++ T G+ D+ Sbjct: 416 ESAKQILKDTLTG-EMSPLSTDVRRITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDL 473