>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.0 bits (78), Expect = 8e-04 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 11/120 (9%) Query: 190 EKVQELLNSKYKKAD--FSIYVKQLETGKE-AGINPDQQMYSASVTKIPYLYYAQEQLNN 246 + E + + + L +G+ D++ S K+ +++ Sbjct: 23 PQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDA 82 Query: 247 HSLSLDKKLKYTAAVNDFAGAYDPEGSGSISKSANDKEYSVQDLINGVAKESDNVAHNIL 306 L++K+ Y D Y P +S+ +V +L SDN A N+L Sbjct: 83 GDEQLERKIHYRQQ--DLV-DYSP-----VSEKHLADGMTVGELCAAAITMSDNSAANLL 134
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 0.001 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 18/88 (20%) Query: 217 ARIPAGVLLEGPPGTGKTLLAKAV---AGEAGVPFFS-----ISGSDFVEMFVGV----- 263 + +++ G GTGK L+A+A+ PF + I G Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 264 -GASRVRS-LFEDAKKAAPAIIFIDEID 289 GA + FE A+ +F+DEI Sbjct: 217 TGAQTRSTGRFEQAEGGT---LFLDEIG 241
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.0 bits (93), Expect = 1e-05 Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 13/238 (5%) Query: 24 NVKADSTDDKIAAQNSKIDSLTNQQKDAQAQVDEIQKQVSAIQKQQEVLQAENEKLNAES 83 K D ++ + SKI L ++ D + ++ +A + + L+AE L A Sbjct: 98 KEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARK 157 Query: 84 AKLTAEIEEL---SKNIVARNESLAN--QARSAQTNGTATSYINTIINSASITEAISRVA 138 A L +E S A+ ++L A A+ + + S + + I + Sbjct: 158 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 217 Query: 139 AMSEIVSANNKMLEQQKEDKEKISEKQVANNEAINTVIA----NQQKLADDAQTLTTKQA 194 A ++A LE+ E S A + + A Q +L + Sbjct: 218 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 277 Query: 195 ELKVAQLNLAAEKATAENEKNSLLEQKAAAE----KAAAEAAAAEAAYKNQQQAQQQA 248 L AEKA E EK L Q + A+ A K + Q+ Sbjct: 278 ADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKL 335
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 31.3 bits (71), Expect = 0.006 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Query: 146 DGLALGKGVVVAETVEQAVEAAYEMLLDNKFGDSGA--RVVIEEF--------LDGEEFS 195 D L L KG++V E+ + E L + F + + ++ + LD + Sbjct: 220 DELVLNKGLLVIGISERTEAKSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLD----T 275 Query: 196 LFAFVNGDKFYIMPTAQDHKRAYDGDKGPNTGGM 229 +F ++ F + + Y P++ + Sbjct: 276 VFTQIDYSVFTSFTSDDMYFSIYVLTYNPSSSKI 309
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 2/133 (1%) Query: 4 MRQYRILVVDDDQSILKLVKNVLELDAYDVTTLDRIED-LELTHFVGYDLILLDVMMEPV 62 M ILV DDD +I ++ L YDV DL++ DV+M Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 63 NGFELCSYIR-PHFSCPIIFLTAKELEEDKVEGLFRGADDYIVKPFGTKELLARVRAHLR 121 N F+L I+ P++ ++A+ ++ +GA DY+ KPF EL+ + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 122 REERREERYSEIA 134 +RR + + + Sbjct: 121 EPKRRPSKLEDDS 133
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 98.6 bits (245), Expect = 8e-27 Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 17/237 (7%) Query: 3 KNVVITGATSGIGEAIARAYLEQGENVVLTGRRTDRLEALKSEFAVT--YPNQTVWTFPL 60 K ITGA GIGEA+AR QG ++ ++LE + S + FP Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA----FPA 64 Query: 61 DVTDMAMVKTVCSDILETIRQIDILVNNAGLALGLAPYQDYEELDMLTMLDTNVKGLMAV 120 DV D A + + + I + IDILVN AG+ L + + N G+ Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 121 TRCFLPSMVAANQGHIINMGSTAGIYAYAGAAVYSATKAAVKTFSDGLRIDTIATDIKVT 180 +R M+ G I+ +GS A Y+++KAA F+ L ++ +I+ Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 181 TIQPGIVETDFSR---VRFHGDKER----AATVYQGI---EALQAQDIADTVVYVTS 227 + PG ETD +G ++ T GI + + DIAD V+++ S Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 68.7 bits (168), Expect = 5e-14 Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 774 LGGLVTEYGGVLCHASIVARECGIPALVCAKNATQLLETGMLVTLDGRRGEIRI 827 + G T+ GG H++I++R IPA+V K T+ ++ G +V +DG G + + Sbjct: 177 VKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIV 230
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 64.4 bits (157), Expect = 1e-12 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 728 VKAQVLVVEDVQEIESAQDRIIVTK-MTDPGWVYL-LTQAKGVIAEQGSLLSHTAIISRE 785 V ++ VE A++ +I+ + +T L KG + G SH+AI+SR Sbjct: 138 VLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRS 197 Query: 786 LGIPSIVNVRGACSQLRNGDWIEMDGLTGKI 816 L IP++V + ++++GD + +DG+ G + Sbjct: 198 LEIPAVVGTKEVTEKIQHGDMVIVDGIEGIV 228
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.0 bits (67), Expect = 0.014 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 20/143 (13%) Query: 43 EDRLAIITGKKKMFDFEEGYFYPTKEAI---------DMYHHFKEDIALFGEMGFKTYRL 93 E R I+ ++F ++G + I +Y HFK+ LF E+ + Sbjct: 11 ETRQHILDVALRLFS-QQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 94 SIAWSRIFPKGDELEPNEAGLKFYEDLFKECHKYGIEPLVTITHFDCPMHLIKQYGGWRN 153 + +P + + + L+ + H + G Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLL----MEIIFHKCEFVGEM-- 123 Query: 154 RLMLEFYERLCRTLFTRYKGLVK 176 ++ R L ++ Sbjct: 124 ----AVVQQAQRNLCLESYDRIE 142
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 2e-20 Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 2 ANLLLIEDNNDIHEILKNLFTQE-HVVFSAYSGTEGLRIFAEEEIHLVLLDIMLPGKNGD 60 A +L+ +D+ I +L ++ + V + R A + LV+ D+++P +N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 EVLREIRKT-SQVPVVMLTALGEKSLVSQYLLDGANDYIVKPFNLDEVAARVTVQLRGSQ 119 ++L I+K +PV++++A + GA DY+ KPF+L E+ R Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI---IGRALA 120 Query: 120 QPQSKPA 126 +P+ +P+ Sbjct: 121 EPKRRPS 127
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 28.7 bits (64), Expect = 0.015 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 5/50 (10%) Query: 58 GFKSDKG-VYINNGRVGAVEGPQAIRTQLAKLPWHLG---RNVRVFDVGD 103 GF+ + Y + + + + K W LG + + ++G+ Sbjct: 39 GFEHRQYSGYTSKEPINERRVIRIVNKLTKKFTW-LGECVKEFDITEIGE 87
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 48.2 bits (115), Expect = 4e-08 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%) Query: 39 IAVKDGKILAVG-SGEPDAS-----LVEPDTKIQSYEGKIATPGLIDCHTHLV 85 I +KDG+I A+G +G PD +V P T++ + EGKI T G +D H H + Sbjct: 88 IGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI 140
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 160 bits (407), Expect = 2e-53 Identities = 43/139 (30%), Positives = 82/139 (58%), Gaps = 2/139 (1%) Query: 28 LNQVVSDLYTARIALHQVHWYMRGAGFMVWHPKMDEYMDTIDETLDEVSERLITLGGKPY 87 LN +S+ + LH+ HWY++G F H K +E D ET+D ++ERL+ +GG+P Sbjct: 17 LNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQPV 76 Query: 88 STLTEFIQHSKIEEKAGEFSKNVEESLERVIEIFRYLTDLYQEALDVTDEEGDDVTNDIF 147 +T+ E+ +H+ I + E + E ++ ++ ++ ++ + + + +E D+ T D+F Sbjct: 77 ATVKEYTEHASITDGGNE--TSASEMVQALVNDYKQISSESKFVIGLAEENQDNATADLF 134 Query: 148 VGAKADLEKTIWMLTAELG 166 VG ++EK +WML++ LG Sbjct: 135 VGLIEEVEKQVWMLSSYLG 153
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 62.9 bits (153), Expect = 5e-14 Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 44/227 (19%) Query: 4 LYFFLVGTVLASFLGLVIDRFP-------------------------EQSIISPSSHCDN 38 FL ++ SFL +VI R P +++ P S C + Sbjct: 17 SLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPH 76 Query: 39 CKQILKARDLVPILSQLLNGFRCRFCKIQLPVWYAAFELVLGLLFLS----WSLGYLSLA 94 C + A + +P+LS L RCR C+ + Y EL+ LL ++ + G+ +LA Sbjct: 77 CNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLA 136 Query: 95 QLLLLTMGLTLAIYDQREQEYP-------LLIWLIFQFLLMATAGINPLMLFFLALGLLA 147 LLL + + L D + P L L+F L + + ++ +L Sbjct: 137 ALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLW 196 Query: 148 FFYDL--------RIGAGDFLFLASCSAIFSLTEILILIQIASFSGL 186 Y +G GDF LA+ A + I++ ++S G Sbjct: 197 SLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.005 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 28 DVVVIL-GPSGSGKTTFLRCLNHLE-KADGGQLTLAGKDYDLAKLSKKEILEIRRKTAF 84 D V+L G G GK+T + L L+ +D GKD +++ E+ TAF Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD-SYEQIAGIVAYELSEMTAF 653
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.7 bits (111), Expect = 2e-07 Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 33/254 (12%) Query: 417 VIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAI 476 ++G+ A++ + R + R + + + + G +G GK +A+ L Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGKELVARALHDYGKRRNGPF 191 Query: 477 IRLDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIILLDEIEKADPQVIT 536 + ++M+ S+L G G + T R + + LDEI T Sbjct: 192 VAINMAAIPRDLIESELFGHEKG--AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQT 249 Query: 537 LLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEAGLEEDAEKPDLMERLKH-YFRP 595 LL+VL G T G T + I+A +N DL + + FR Sbjct: 250 RLLRVLQQGEYTTVGGRTPIRSDVRIVAATNK---------------DLKQSINQGLFRE 294 Query: 596 EFLNRFNAV-IEFSHLK--KEDLMEIVNLMLVEVNQTLSKKEIDLAVSDAAKEFLRDAGY 652 + R N V + L+ ED+ ++V + + + ++ A E ++ + Sbjct: 295 DLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK--EGLDV-KRFDQEALELMKA--H 349 Query: 653 DQVMGVRPLRRVIE 666 VR L ++ Sbjct: 350 PWPGNVRELENLVR 363
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 3e-04 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 34/195 (17%) Query: 478 DILETLSRLSGIPVQKLTRTDAKKYLNLEKELHKRVIGQDAAVSAVSRAIRRNQSGIRTG 537 +++ + R P ++ ++ + + ++G+ AA+ + R + R + Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMP------LVGRSAAMQEIYRVLAR----LMQT 159 Query: 538 KRPIGSFMFLGPTGVGKTELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYV 597 + M G +G GK +A+AL + + +M+ S L G Sbjct: 160 DLTL---MITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH----- 211 Query: 598 GYEEGGELTEKVRNRPYSV-------LLFDEVEKAHSDIFNVLLQVLDDGQLT---DSKG 647 E G T L DE+ D LL+VL G+ T Sbjct: 212 ---EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTP 268 Query: 648 RKVDFSNTIIIMTSN 662 + D I+ +N Sbjct: 269 IRSDVR---IVAATN 280
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 43.8 bits (103), Expect = 3e-08 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 26 LNNLDDSEEGIARFLKRNPETCLVALEGESFIGAILVGTD-GRRAYIYHTAVHPYFRRKG 84 +D + ++ +++ + + + IG I + ++ A I AV +R+KG Sbjct: 47 FKQYEDDDMDVS-YVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKG 105 Query: 85 VGRALVEQALSAVKRLGIHKVSLVVFERNELGNRFWQELGFSV 127 VG AL+ +A+ K + L + N F+ + F + Sbjct: 106 VGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 28.3 bits (63), Expect = 0.007 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 1 MKKIFSLLTLAFALFLVGCSNNQTKTDTSS 30 MK S L L LVGC+++ T S Sbjct: 1 MKLRLSALALG-TTLLVGCASSGTDQQGRS 29
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 45.2 bits (107), Expect = 6e-08 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 5 IAIVFGTFAPLHQGHIDLIQKAKRSYDKVRVVVSGYQEDRGEEAGLSLQKRFRYTRETFA 64 AI G+F P+ GH+D+I++ R +D+V V V + ++ S+Q+R + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVL---RNPNKQPMFSVQERLEQIAKAIA 58 Query: 65 D 65 Sbjct: 59 H 59
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.012 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 28 EETKTSTSANKTVQASSSSKVASSSKASSAPKASSNASSNKTVGQAEQVQKAVESVQPSQ 87 +ET+T+ + + K PK +S S + + Q Q +P++ Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ-----AEPAR 1147 Query: 88 NQTQQGVNQQIQSQQNTQAQPSQSQQAPSQQATPTQPTKPNQATQPAQPSQPAQNPATDR 147 ++ QSQ NT A Q + S T + P Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 148 QLQNKQAETN 157 Q +N Sbjct: 1208 QPTVNSESSN 1217
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.1 bits (70), Expect = 8e-04 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Query: 38 IFVEDEDGNLMGGL-VAETFGYWLEIEYLYVSEALRGQGLGSDILQRAEKEARDRKCKYS 96 F+ + N +G + + + + IE + V++ R +G+G+ +L +A + A++ Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 97 FVDTFHFQAP--DFYKKHGY 114 ++T FY KH + Sbjct: 127 MLETQDINISACHFYAKHHF 146
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 46.2 bits (109), Expect = 2e-06 Identities = 35/241 (14%), Positives = 74/241 (30%), Gaps = 13/241 (5%) Query: 12 ASAEKRLRYSVRKFNVGVASVAVAAFMFFGGNV----VSADTLAKTDSSS---TSTEKTT 64 YS+RK G ASVAVA + G V + ++ + + Sbjct: 2 TKNNTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVSAVATRSQTDTLEKVQERADK 61 Query: 65 SVPDSGEDSGANDSDSESAIEKNSTVATVAESNAVSNAASTASSTSAEDLSSKVEEKTVK 124 ++ N S + + E + + + S + +SK++E + Sbjct: 62 FEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEAR 121 Query: 125 SEVASK----SEAALKEATSQVSKASVATSQSTAATQ-SEARVSPATSATAESTAVSSEA 179 K + ++++ + A E + A + + +A Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 180 AAESTAAVEPAKVSVEK-AASQAASLATASQAANAVAKSEANSTLAAAQNEVNKGYADFR 238 AE A + + S A +++ A+ A + A + +G +F Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 239 K 239 Sbjct: 242 T 242
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 42.3 bits (99), Expect = 1e-05 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 2284 VTADSAKPADEVVTYKKVEVPPTPTPTPEPKPTPTPEPKPEPKPEPKPVPPTPAPVPNKQ 2343 VT +P V + V P P P P P+P P P KP+PKP P ++ Sbjct: 50 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVIEKPKPKPKPKPKPVKKVQE 108 Query: 2344 VPNKPVEPKVP 2354 P + V+P Sbjct: 109 QPKRDVKPVES 119 Score = 40.0 bits (93), Expect = 6e-05 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 7/82 (8%) Query: 2300 KVEVPPTPTPTPEPKPTPTPEPKPEPKPEPKP-------VPPTPAPVPNKQVPNKPVEPK 2352 +P P P P P+PKP+PKP K V P + + P Sbjct: 75 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLT 134 Query: 2353 VPVTTALPNTGEKSSSAAVLGL 2374 TA + S ++ L Sbjct: 135 SSTATAATSKPVTSVASGPRAL 156 Score = 37.7 bits (87), Expect = 3e-04 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 2301 VEVPPTPTPTPEPKPTPTPEPKPEPKPEPKPVPPTPAPVPNKQVPNKPVEPKVPVTTAL 2359 V P P PEP+PEP P PP APV ++ KP PV Sbjct: 50 VTPADLEPPQAVQPPPEPVVE-PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 107 Score = 37.7 bits (87), Expect = 3e-04 Identities = 22/96 (22%), Positives = 32/96 (33%) Query: 2275 DKASVADVKVTADSAKPADEVVTYKKVEVPPTPTPTPEPKPTPTPEPKPEPKPEPKPVPP 2334 + V + + V P P P+PKP P + + +PK + KPV Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVES 119 Query: 2335 TPAPVPNKQVPNKPVEPKVPVTTALPNTGEKSSSAA 2370 PA P + T+ P T S A Sbjct: 120 RPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 155 Score = 31.9 bits (72), Expect = 0.024 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 2312 EPKPTPTPEPKPEPKPEPKPVPPTPAPVPNKQVPNKPVEPKVPVTTALPNTGEK 2365 EP P P+P +PEP+P P P V KP P + E+ Sbjct: 56 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 109
>SECA#SecA protein signature. Length = 901 Score = 1065 bits (2755), Expect = 0.0 Identities = 393/905 (43%), Positives = 551/905 (60%), Gaps = 75/905 (8%) Query: 1 MANILKKIIENDKG-EIRKLEKMADKVMSYEDEMAALTDEELQAKTVEFKERYANGETLD 59 + +L K+ + +R++ K+ + + + E EM L+DEEL+ KT EF+ R GE L+ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 QLLFEAFAVVREGAKRVLGLFPYKVQIMGGIVLHHGDVPEMRTGEGKTLTATMPVYLNAL 119 L+ EAFAVVRE +KRV G+ + VQ++GG+VL+ + EMRTGEGKTLTAT+P YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 SGQGVHVVTVNEYLSERDATEMGELYSWLGLSVGINLASKSPMEKREAYACDITYSTNSE 179 +G+GVHVVTVN+YL++RDA L+ +LGL+VGINL KREAYA DITY TN+E Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 IGFDYLRDNMVVRAENMVQRPLNYALVDEVDSILIDEARTPLIVSGPTASDTNQLYYRAD 239 GFDYLRDNM E VQR L+YALVDEVDSILIDEARTPLI+SGP + ++Y R + Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS-EMYKRVN 240 Query: 240 SFVKTLQKD------------DYIIDIPSKTIGLSDSGIDKAESYFN-------LENLYD 280 + L + + +D S+ + L++ G+ E E+LY Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 281 LENVALTHFIDNALRANYIMTLDVDYVVSEKQEILIVDQFTGRTMEGRRFSDGLHQAIEA 340 N+ L H + ALRA+ + T DVDY+V + E++IVD+ TGRTM+GRR+SDGLHQA+EA Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIV-KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359 Query: 341 KEAVPIQEESKTSASITYQNLFRMYKKLSGMTGTGKTEEEEFREIYNIRVIPIPTNRPVQ 400 KE V IQ E++T ASIT+QN FR+Y+KL+GMTGT TE EF IY + + +PTNRP+ Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419 Query: 401 RIDHPDLLYPSLEAKFKAVVEDVKERYKTGQPVLVGTVSVDTSDYLSQKLVAAGIPHEVL 460 R D PDL+Y + K +A++ED+KER GQPVLVGT+S++ S+ +S +L AGI H VL Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 461 NAKNHYKEAQIIMNAGQRGAITIATNMAGRGTDIKLG----------------------- 497 NAK H EA I+ AG A+TIATNMAGRGTDI LG Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 498 ------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMKRFG 551 + V E GGL +IGTERHESRRIDNQLRGRSGRQGD G S+FYLS+ED LM+ F Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 552 SERIKALLDRMNLSEEESVIKSRMLTRQVEAAQKRVEGNNYDTRKQVLQYDDVMREQREI 611 S+R+ ++ ++ + E+ I+ +T+ + AQ++VE N+D RKQ+L+YDDV +QR Sbjct: 600 SDRVSGMMRKLGMKPGEA-IEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRA 658 Query: 612 IYSQRYDVITADRDLAPEIHAMIRRTINRIVDG-------SSHSDHDEKIEAILNFAKYN 664 IYSQR +++ D++ I+++ +D D E + N + Sbjct: 659 IYSQRNELLDVS-DVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLD 717 Query: 665 LVAEDSISADDLEGKSNQEIKDYLMERASEVYANQVSKLRDEEAVQEFQKVLILRVVDNK 724 L + + + + +++ ++ ++ EVY + + E ++ F+K ++L+ +D+ Sbjct: 718 LPIAEWLDKEP--ELHEETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTLDSL 774 Query: 725 WTDHIDALDQLRQAVGLRGYAQNNPVVEYQAEGFRMFNDMIGSIEFDVTRLMMKAQIH-- 782 W +H+ A+D LRQ + LRGYAQ +P EY+ E F MF M+ S++++V + K Q+ Sbjct: 775 WKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMP 834 Query: 783 -------EQERPRTEHSISTTATRNIAAQNP---NLPKNVDLSSVKRNDLCPCGSGKKFK 832 +Q R E + + L V RND CPCGSGKK+K Sbjct: 835 EEVEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYK 894 Query: 833 NCHGR 837 CHGR Sbjct: 895 QCHGR 899
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 28.1 bits (62), Expect = 0.008 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 3 RGHGIDIEEISSIGRAYEKNERFAEKILTAQELARFSSLKGKRKLEYLAGRWSAKEAFAK 62 + GIDIE+I S A E A I+ + E + L +SAKE+ K Sbjct: 102 QRIGIDIEKIMSQHTATE----LAPSIIDSDERQILQA-SLLPFPLALTLAFSAKESVYK 156 Query: 63 AWGTGIGPVTFQDLEILNDDKG 84 A+ + F ++ + Sbjct: 157 AFSDRVTLPGFNSAKVTSLTAT 178
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 351 bits (901), Expect = e-122 Identities = 128/368 (34%), Positives = 192/368 (52%), Gaps = 19/368 (5%) Query: 5 LHRPTKAVIDLSAIAFNIEQIAAHIPQSVQKWAVVKANAYGHGAVPVSQHIQPLVDGFCV 64 + RP +A +DL A+ N+ + + + W+VVKANAYGHG + I DGF + Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHA-RVWSVVKANAYGHGIERIWSAI-GATDGFAL 58 Query: 65 SNIDEALELREAGIAKSILIL-GVSSLEAVPLAIQQQITLTVASLAWLEELLNQQADLTG 123 N++EA+ LRE G IL+L G + + + Q ++T V S W + L Sbjct: 59 LNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSN-WQLKALQNARLKAP 117 Query: 124 LTVHIKIDSGMGRIGFRDSQEAQQAISRLQAAGAV-VEGIFTHFATADELDTSHFVAQLN 182 L +++K++SGM R+GF+ + +L+A V + +HFA A+ D + Sbjct: 118 LDIYLKVNSGMNRLGFQPDR-VLTVWQQLRAMANVGEMTLMSHFAEAEHPDG--ISGAMA 174 Query: 183 RFKEILSELAFLPPVVHASNSATTLWHSETIMNAVRLGDIIYGLNPSGRVLDL-PYEVKP 241 R ++ L SNSA TLWH E + VR G I+YG +PSG+ D+ ++P Sbjct: 175 RIEQAA---EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRP 231 Query: 242 ALSLESALVHVKEIQAGAHVGYGATYTSDSQQIIGTIPLGYADGWTRDM-QGFDVLIDGQ 300 ++L S ++ V+ ++AG VGYG YT+ +Q IG + GYADG+ R G VL+DG Sbjct: 232 VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGV 291 Query: 301 RCPIVGRVSMDQITVRLPRV--YPLGTQVVLIGQSGAELITATDVAEKRGTINYEVVCLI 358 R VG VSMD + V L +GT V L G+ I DVA GT+ YE++C + Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKE----IKIDDVAAAAGTVGYELMCAL 347 Query: 359 SDRVPREY 366 + RVP Sbjct: 348 ALRVPVVT 355
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 0.003 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 9/106 (8%) Query: 251 FSLT-EAQERSLEEILSDLQSPAHMNRLLQGDV-----GSGKTVVAGLAMYAAYTAGYQS 304 F++ EA +R D+Q M L + + G GKT+ A L Y G Sbjct: 68 FAVVREASKRVFGMRHFDVQLLGGM-VLNERCIAEMRTGEGKTLTATLPAYLNALTGKGV 126 Query: 305 ALMVPTEILAEQHLDSLAQLFPELNLA--LLTGGMKAAERRETLAA 348 ++ + LA++ ++ LF L L + GM A +RE AA Sbjct: 127 HVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAA 172
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.021 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 8/164 (4%) Query: 3 KEEKMPTEQESKETVLDLEDAKEMTVGQAARKNEEVEAGVTEGDNILDKYIKQHRDEIEA 62 K E+ TE ++ + E + +A + EV +E K+ + Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNV---KANTQTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 63 GKFETQKLRIMEELAQQKEALIQETIKQLKSQS-QAKGNTANVPLPSVQPVKAEVANSAN 121 K + + + E + + KQ +S++ Q + A P+V + + + Sbjct: 1110 EKAKVETEKTQEVPKVTSQV----SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTT 1165 Query: 122 VETTKPAQPALTVAAEAPIIPATKPVSNPVPTVFEDEDEPETKP 165 +T +PA+ + + T N V E+ T+P Sbjct: 1166 ADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 28.2 bits (63), Expect = 0.014 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 26 IGILGGNFNPVHHAHLVVADQVRQQLGLDQVLLMPEYEPPHVDKKETIDEKHRLKMLELA 85 I G+F+P+ HL + ++ + DQV + P +K+ + RL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVLRNP---NKQPMFSVQERLEQIAKA 56 Query: 86 IEGIEGLGIETIE 98 I + +++ E Sbjct: 57 IAHLPNAQVDSFE 69
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 9e-06 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 38 LENDQHLILVAEEDGQVIGYAHAASYDCLYFPSLLNLLALAVAQDFQGRGHGRAMMQALR 97 +E + + + IG S + + +AVA+D++ +G G A++ Sbjct: 60 VEEEGKAAFLYYLENNCIGRIKIRSN----WNGYALIEDIAVAKDYRKKGVGTALLHKAI 115 Query: 98 EEAKAAGYTGIRINSGISRSAAHEFYRSLG 127 E AK + G+ + + +A FY Sbjct: 116 EWAKENHFCGLMLETQDINISACHFYAKHH 145
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (276), Expect = 1e-31 Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 24/252 (9%) Query: 3 KTVLVTGASSGIGRAQALTFLENGYRVYGVDKGENPGFLNELRFFKMDLTEDLTPLFTSL 62 K +TGA+ GIG A A T G + VD + P Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 63 PE---------------VDILCNTAGILDDYRPLHETSDEDWERIFALNLTATMKITRFY 107 +DIL N AG+L +H SDE+WE F++N T +R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLR-PGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 108 LQKMLEKKSGIIINMCSIASFLAGGGGAAYTASKHALAGLTKQIALDYADQNIQVFGLAP 167 + M++++SG I+ + S + + AAY +SK A TK + L+ A+ NI+ ++P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 168 GAVKTAMT--------AADFEPGGVADWVAEETPIKRWLAPQEVADVSLFLASGKAAAMQ 219 G+ +T M A+ G + P+K+ P ++AD LFL SG+A + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 220 GEIIKIDGGWSL 231 + +DGG +L Sbjct: 248 MHNLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 50.6 bits (121), Expect = 1e-09 Identities = 16/111 (14%), Positives = 47/111 (42%) Query: 4 RILLVENEKNLARFVTLELQKEAFLLDVVETGSQGLALARENDYDLFLLNYDLQDMTASE 63 IL+ +++ + + L + + + + + D DL + + + D A + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FARQLSLFKPASVIIVLASREEIKEHADEIQRFAVSYTVKPFIISDLVEKV 114 ++ +P ++V++++ ++ A Y KPF +++L+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 160 bits (406), Expect = 4e-53 Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 6 IVESFELDHTIVKAPYVRLIGEETGPKGDIISNFDIRLVQPNEDSIPTAGLHTIEHLLAM 65 +++SF +DHT + AP VR+ PKGD I+ FD+R PN+D + G+HT+EHL A Sbjct: 2 LLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAG 61 Query: 66 LIRKRIDG----MIDCSPFGCRTGFHMIMWGQHSATEIAQVIKSCLEEIAETTTWEDVPG 121 +R ++G +ID SP GCRTGF+M + G S ++A + +E++ + +P Sbjct: 62 FMRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPE 121 Query: 122 TTIESCGNYKDHSLFSAKEWAKLILSQGISDN 153 CG HSL AK+ AK IL G++ N Sbjct: 122 LNEYQCGTAAMHSLDEAKQIAKNILEVGVAVN 153
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 4e-04 Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 41/220 (18%) Query: 26 VKMKASKEAAELTLL---NAEQEATNLRGQAEREADLIVKEAMRETSSLKKEALLEAKEE 82 +K+ A A+ + R Q + + + + + ++EE Sbjct: 125 LKLTALGAEADTLKTQSSLLQARLEQTRYQILSRS-IELNKLPELKLPDEPYFQNVSEEE 183 Query: 83 ARKYREEVDAEFKSERQELKQIESRLTERASSLDRKDDNLTNKEKTLEHKEQSLTD---- 138 + + +F + + + Q E L ++ + + E ++ L D Sbjct: 184 VLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243 Query: 139 --------------KAKHIDAR------EAQVAELEQQKEAELERVASLTQTEAREIILT 178 + K+++A ++Q+ ++E + A+E Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI------------LSAKEEYQL 291 Query: 179 KTEDKLSKEIATRIREAEQDIKERSDKVAKDILVQAMQRI 218 T+ EI ++R+ +I + ++AK+ Q I Sbjct: 292 VTQL-FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.013 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 6/73 (8%) Query: 806 YLPLADLLNVEEELARLDKELAKWQKELDMVGKKLSNERFVANAKPEVVQKERDKQADYQ 865 + +L E + EL ++ +L+ + ++ +AK E + + + Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI------LSAKEEYQLVTQLFKNEIL 301 Query: 866 AKYDATVARIDEM 878 K T I + Sbjct: 302 DKLRQTTDNIGLL 314
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.034 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 1 MNTLLAILLIMLAFFGGILLGMYLLRRQVEKEFAENPRLNVEAVRMLLSANGQKPSEARV 60 + +L L + I+ GM +L ++ F P + ++ ++ R Sbjct: 530 VGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFL--PEEDQGVFLTMIQLP-AGATQERT 586 Query: 61 QQVYRQIINQQKAAAAKNK 79 Q+V Q+ + N Sbjct: 587 QKVLDQVTDYYLKNEKANV 605
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 28.3 bits (63), Expect = 0.019 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 7/42 (16%) Query: 55 LGIEAVSRGMESAVLVEKDRRAQA---IVAENIAMTKEAARF 93 LG+ A+ + + L + + A +V I T EAAR+ Sbjct: 150 LGLPALDSAITT--LFYYNANSAASALMVL--IQSTSEAARY 187
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 153 bits (387), Expect = 2e-50 Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Query: 5 IGLFTGSFDPITNGHVDLIERASRLFDRLYVGIFYNPHKAGFFSIHAKKRMVLAALAHLE 64 ++ GSFDPIT GH+D+IER RLFD++YV + NP+K FS+ + + A+AHL Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 65 NVEVITSHDELAVDVAKRLGVTTLVRGLRNGQDLDYEAGLHFFNKELAPDLETVFLLSQP 124 N +V + L V+ A++ ++RGLR D + E + NK LA DLETVFL + Sbjct: 62 NAQVDSFEG-LTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 125 AYRYISSSAMRELIAFQQDLSAYVPASVIEELEKK 159 Y ++SSS ++E+ F ++ +VP+ V L + Sbjct: 121 EYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQ 155
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 62.1 bits (151), Expect = 1e-13 Identities = 58/261 (22%), Positives = 97/261 (37%), Gaps = 44/261 (16%) Query: 4 LYFFLVGTVLASFLGLVIDRFP-------------------------EQSIISPSSHCDN 38 FL ++ SFL +VI R P +++ P S C + Sbjct: 17 SLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPH 76 Query: 39 CKQILKARDLVPILSQLLNGFRCRFCKIQLPVWYAAFELVLGLLFLS----WSLGYLSLA 94 C + A + +P+LS L RCR C+ + Y EL+ LL ++ + G+ +LA Sbjct: 77 CNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLA 136 Query: 95 QLLLLTMGLTLAIYDQREQEYPL-----LIWLIFQFLLMAT-----SGINLLMLFFLFLG 144 LLL + + L D + P L+W F L+ + M +L L Sbjct: 137 ALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLW 196 Query: 145 LLAFFYDLR-----IGAGDFLFLASCSAIFSLTEILILIQIACFSGLACFCFKKKKDRLA 199 L + + L +G GDF LA+ A + I++ ++ G Sbjct: 197 SLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHH 256 Query: 200 FVPCLLFGAAVVICYKLWLFY 220 + FG + I + L + Sbjct: 257 QSKPIPFGPYLAIAGWIALLW 277
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 181 bits (460), Expect = 1e-54 Identities = 97/415 (23%), Positives = 194/415 (46%), Gaps = 31/415 (7%) Query: 15 FRKRILFTLFIIAIYILGRHILLPGYNGSMEAFRIKEDNPLAALY----LLAGIDVSQIS 70 RK++LFTL II +Y +G HI +PG + ++E + L+ + +G + QI+ Sbjct: 14 LRKKLLFTLAIIVVYRVGTHIPIPGVDYKNVQQCVREASGNQGLFGLVNMFSGGALLQIT 73 Query: 71 VFSLGLGPWITTMIVWQVM--------NLKKSWNIQSWSLKKTDFFQKILTLFFAIVQGL 122 +F+LG+ P+IT I+ Q++ LKK K + + LT+ AI+QG Sbjct: 74 IFALGIMPYITASIILQLLTVVIPRLEALKKEGQA---GTAKITQYTRYLTVALAILQGT 130 Query: 123 AIMYTAYRGN-----GRFLLLVDDWLYNLAVL--LTVVTGSFIIIWLSSLNTRKGVG-GS 174 ++ TA +V D + + + G+ +++WL L T +G+G G Sbjct: 131 GLVATARSAPLFGRCSVGGQIVPDQSIFTTITMVICMTAGTCVVMWLGELITDRGIGNGM 190 Query: 175 TIIIISGILLQFADQLIVLLGKSLSSVRGGMMLVVALLAYLLLTFVAVVCEKAEIRLPLN 234 +I++ I F L + + + G + + L++ + V E+A+ R+P+ Sbjct: 191 SILMFISIAATFPSALWAIKKQGTLA-GGWIEFGTVIAVGLIMVALVVFVEQAQRRIPVQ 249 Query: 235 --RIMLSSRYYDK--SYLPIKFIPSGGMPIMYATSVLMLFQLLLDWTGKGFSLK---FGN 287 + M+ R Y +Y+P+K +G +P+++A+S+L + L+ + G K N Sbjct: 250 YAKRMIGRRSYGGTSTYIPLKVNQAGVIPVIFASSLLYIPALVAQFAGGNSGWKSWVEQN 309 Query: 288 LFDFTKPLGLLVYLVAIYLLGILFAYINLEPEETAKRLQRQGEYFDYIQPGKETLKVLKH 347 L P+ ++ Y + I + I+ PEE A +++ G + I+ G+ T + L + Sbjct: 310 LTKGDHPIYIVTYFLLIVFFAFFYVAISFNPEEVADNMKKYGGFIPGIRAGRPTAEYLSY 369 Query: 348 YISLQSNIGAIYLIMYVGLPYFINFFLPLPSFFLTLPSTLVILISMLLPLREEIR 402 ++ + G++YL + +P F ++++I++ + L ++I Sbjct: 370 VLNRITWPGSLYLGLIALVPTMALVGFGASQNFPFGGTSILIIVGVGLETVKQIE 424
>SECA#SecA protein signature. Length = 901 Score = 705 bits (1821), Expect = 0.0 Identities = 305/818 (37%), Positives = 458/818 (55%), Gaps = 65/818 (7%) Query: 13 KLRRYKKILEKINQLSDDYAAMSDEELQAKTQWFKSRLSKGERLQEILPEAYATIREAAK 72 LRR +K++ IN + + +SDEEL+ KT F++RL KGE L+ ++PEA+A +REA+K Sbjct: 17 TLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIPEAFAVVREASK 76 Query: 73 RVLGLYPYDVQILGALVMQDNQIAEMRTGEGKTLTAILPLYLNALTGNSTILVTANEYLA 132 RV G+ +DVQ+LG +V+ + IAEMRTGEGKTLTA LP YLNALTG +VT N+YLA Sbjct: 77 RVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLA 136 Query: 133 IRDAKQMAPVFHYLGMTVGIGVSENPAKRLKVAQKQRIYQSDIVYTTHSALGFDYLEENL 192 RDA+ P+F +LG+TVGI + PA K+ Y +DI Y T++ GFDYL +N+ Sbjct: 137 QRDAENNRPLFEFLGLTVGINLPGMPA-----PAKREAYAADITYGTNNEYGFDYLRDNM 191 Query: 193 ATSQAKKFLPRFYFCLVDEVDAALLDSAQMPLIISGSPRVQSNLFLSCDEFVKTLKEEE- 251 A S ++ + ++ LVDEVD+ L+D A+ PLIISG S ++ ++ + L +E Sbjct: 192 AFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEK 251 Query: 252 ----------DFKLDSTRTSVWLTRKGVKEAE-------VYFRVQNAYDPNNYQLIRQIN 294 F +D V LT +G+ E + ++ Y P N L+ + Sbjct: 252 EDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVT 311 Query: 295 LALRANHLFEKDRQYTVENGEVKLMDEATGRVLEGNKLQSGLHQALEARERVKISLETRS 354 ALRA+ LF +D Y V++GEV ++DE TGR ++G + GLHQA+EA+E V+I E ++ Sbjct: 312 AALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQT 371 Query: 355 MASITYQNLFKMFPKLAGMTGTGKVCEDEFREVYDLGVVVVPTRKPNQRIDYPDEIYLTI 414 +ASIT+QN F+++ KLAGMTGT EF +Y L VVVPT +P R D PD +Y+T Sbjct: 372 LASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTE 431 Query: 415 PQKLYASLDYIKKLHKKGQPVLIATGSVRMSEIYSMLLLQEGIAHNVLNAYNAAKEAEMI 474 +K+ A ++ IK+ KGQPVL+ T S+ SE+ S L + GI HNVLNA A EA ++ Sbjct: 432 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIV 491 Query: 475 AQAGRRSAVTVATSMAGRGTDIIL-----------------------------EEGVAKL 505 AQAG +AVT+AT+MAGRGTDI+L + V + Sbjct: 492 AQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEA 551 Query: 506 GGLAVIGTERMSSERVDLQLRGRAGRQGAPGLSKFFVSLEDDIITKTGSKWINDFYQKEV 565 GGL +IGTER S R+D QLRGR+GRQG G S+F++S+ED ++ S ++ +K Sbjct: 552 GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLG 611 Query: 566 AKPEEKQKVHLKSVRIKYEVTEAQRNSDNAAAASRRSTEQYDESIRIQRQIIYNKRNDII 625 KP E ++ + + AQR ++ R+ +YD+ QR+ IY++RN+++ Sbjct: 612 MKPGE----AIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELL 667 Query: 626 ARPDFK---LEYFLSVLSDAMDAYMKKHPFKEQADLYRFV--LDNISYYCQGIPRDLDVT 680 D V +DAY+ +E D+ L N I LD Sbjct: 668 DVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKE 727 Query: 681 NIRQ---VKKFLSKLFIEEYQRKRDRIEDSELFGQLQRIAVLRAVDDCWVEQVDYLQQFQ 737 +++ + IE YQRK + + +E+ ++ +L+ +D W E + + + Sbjct: 728 PELHEETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTLDSLWKEHLAAMDYLR 786 Query: 738 TLVVSQGYAQKNPVYEFHKEAFESYKRMNADMNLKIIK 775 + +GYAQK+P E+ +E+F + M + ++I Sbjct: 787 QGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVIS 824
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 43.3 bits (102), Expect = 5e-06 Identities = 40/256 (15%), Positives = 95/256 (37%), Gaps = 31/256 (12%) Query: 682 SLSISASVAQSELESKLTSLSDSISQSASLSLSVSESLSQSASLSTAFSLSESVSLSESE 741 +LS+ + A S L DS S+ ++SL++S T L + Sbjct: 436 ALSVDMTQANSTLPD------DSQHDGQSVRFLYNKSLNES---GTNIQL-----VGYRY 481 Query: 742 SLSQSLSVSESLSQSLSVLSSFSLSESESLSQSLSISESLSESASLSTSLSLSQSISEYN 801 S S + +++ ++ + + + + +L+ + L+++Q + Sbjct: 482 STSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT- 540 Query: 802 WISSSLSVSASVAQSAYESKLISVSESASQSTS-TSISLSESLSHSVSI-----STSFSL 855 S+L +S S Q+ + + + A +T+ I+ + S S + + +L Sbjct: 541 ---STLYLSGS-HQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLAL 596 Query: 856 SESISLSESEQISQSIVRVSLSEFYSIS------VSELLSYRQSVSESKSVSHSLQVSES 909 + +I S + S YS+S ++ L ++ E ++S+S+Q + Sbjct: 597 NVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYA 656 Query: 910 LSLSLSRTESMRLSYQ 925 + + + Sbjct: 657 GGGDGNSGSTGYATLN 672 Score = 42.9 bits (101), Expect = 7e-06 Identities = 36/243 (14%), Positives = 92/243 (37%), Gaps = 26/243 (10%) Query: 540 SLSVSASLAQSELESQLTSISESISVSESLSQ------------SVSVFTSFSLSESISL 587 S+ ++ + + +SQ S ++SL++ S S + +F+ + + Sbjct: 438 SVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRM 497 Query: 588 SESESLSASSSFSLSESASLSESESLSQSLSLSESLSQSVSASHSLSLSESISVSQSEQE 647 + + + + + + ++ L +++Q + + +L LS S Q+ Sbjct: 498 NGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGS---HQTYWG 554 Query: 648 SQSLSVSESLSQSAS---ISTSFSLSESLSEYT-WLSSSLSISASVAQSELESKLTSLSD 703 + ++ + + I+ + S S + + + L+++ ++ L S S Sbjct: 555 TSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIP---FSHWLRSDSK 611 Query: 704 SISQSASLSLSVSESLSQSASLSTAFSLSESVSLSESESLSQSLSVSESLSQSLSVLSSF 763 S + AS S S+S L+ + +L E +LS S+ + + S+ Sbjct: 612 SQWRHASASYSMSHDLNGRMTNLA----GVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTG 667 Query: 764 SLS 766 + Sbjct: 668 YAT 670 Score = 42.1 bits (99), Expect = 1e-05 Identities = 41/275 (14%), Positives = 93/275 (33%), Gaps = 20/275 (7%) Query: 578 SFSLSESISLSESESLSASSSFSLSESASLSESESLSQSLSLSESLSQSVSASHSLSLSE 637 S ++++ S +S S + SL+ES + Q + S S + + + Sbjct: 438 SVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRM 497 Query: 638 SISVSQSEQESQSLSVSESLSQSASISTSFSLSESLSEYTWLSSSLSISASVAQSELESK 697 + +++ + + + + + L ++++ +S+L +S S Q+ + Sbjct: 498 NGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGS-HQTYWGTS 556 Query: 698 LTSLSDSISQS-----ASLSLSVSESLSQ-SASLSTAFSLSESVSLSESESLSQSLSVSE 751 + + +LS S + + +L+ ++ S S S+ Sbjct: 557 NVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFS-----HWLRSDSK 611 Query: 752 SLSQSLSVLSSFSLSESESLSQSLSISESLSESASLSTSLSLSQSISEYNWISSSLSVSA 811 S + S S S + ++ + +L E +LS S+ Y S S Sbjct: 612 SQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTG-----YAGGGDGNSGST 666 Query: 812 SVAQSAYESKLISVSESASQS---TSTSISLSESL 843 A Y + + S S +S + Sbjct: 667 GYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGV 701
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 167 bits (424), Expect = 3e-51 Identities = 85/350 (24%), Positives = 149/350 (42%), Gaps = 48/350 (13%) Query: 4 KILVTGGAGFIGTHTVIELVNAGHEVVVVDNLINSNKKSIEI--VEKIVGKNIPFYIADV 61 K LVTG AGFIG H L+ AGH+VV +DNL + S++ +E + F+ D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 62 CDEEKLLEIFTKERPTGVIHFAALKAVGESTEIPLTYYKNNITGVLTLLKVMEEVNCKNI 121 D E + ++F V AV S E P Y +N+TG L +L+ +++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 122 IFSSSATVYGDPHTVPILE----DFPLSVTNPYGRTKLMTEEI---LTDIYKADISWNVV 174 +++SS++VYG +P D P+S Y TK E + + +Y Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELMAHTYSHLYGLP----AT 174 Query: 175 ILRYFNPIGAHESGDLGENPNGIPNNLLPYVTQVAVGKLPSVRVFGNDYPTVDGTGVRDY 234 LR+F G P G P+ L T+ A+ + S+ V+ G RD+ Sbjct: 175 GLRFFTVYG----------PWGRPDMALFKFTK-AMLEGKSIDVYN------YGKMKRDF 217 Query: 235 IHVVDLARGHVAALQKL---------------EGKSGLNIYNLGTGKGYSVLEIIKNMEK 279 ++ D+A + + + +YN+G +++ I+ +E Sbjct: 218 TYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED 277 Query: 280 AVGKKIPYEITERRAGDIASCYADSKKAKDELGWEAEFDIERMCQDAWRW 329 A+G + + + GD+ AD+K + +G+ E ++ ++ W Sbjct: 278 ALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 62.9 bits (153), Expect = 2e-13 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 35/189 (18%) Query: 2 ILITGANGQLGTELRYLLDERNEEYVAVD------------------------VAEMDIT 37 L+TGA G +G + L E + V +D ++D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 38 NAQMVDKVFAEVKPSLVYHCAAYTAV-DAAEDEGKELDYAINVIGTENVAKAAEAHG-AT 95 + + + +FA V+ AV + E+ D N+ G N+ + + Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD--SNLTGFLNILEGCRHNKIQH 120 Query: 96 MVYISTDYVFDGQKPVGEEWEVDDRPD-PQTEYGRTKRMGEELVEKYSSRFYIIRTAW-- 152 ++Y S+ V+ + + + DD D P + Y TK+ E + YS + + T Sbjct: 121 LLYASSSSVYGLNRKM--PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 153 --VFGNYGK 159 V+G +G+ Sbjct: 179 FTVYGPWGR 187
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.1 bits (60), Expect = 0.040 Identities = 9/38 (23%), Positives = 20/38 (52%) Query: 13 QPEMSVLVIYWSLSVIPIFIGLALMYESSNVPTLVLFS 50 + + ++S + +F+ LA +YES ++P V+ Sbjct: 866 RLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLV 903
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.9 bits (116), Expect = 1e-09 Identities = 12/71 (16%), Positives = 37/71 (52%) Query: 19 QESNRITKESLEISLMQLLEKKDLKKITISELVERAGVSRAAFYRNYSSKEEILEGIFKN 78 ++ + T++ + ++L ++ + ++ E+ + AGV+R A Y ++ K ++ I++ Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 79 TVQGIIDKLEQ 89 + I + + Sbjct: 66 SESNIGELELE 76
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 40.2 bits (94), Expect = 5e-06 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 10/131 (7%) Query: 2 KIFVLEDDLKQQAYMESTIQGILKKNGWECQFLEIYGKPDMLIDAVRERGSHQIFFLDIE 61 I V +DD + + L + G++ I L + G + D+ Sbjct: 5 TILVADDDAAIRTVLNQ----ALSRAGYDV---RITSNAATLWRWIA-AGDGDLVVTDVV 56 Query: 62 IKQETQKGLEVAGKIRKLDPYALIVFVTTHSEFMPLTFRYQVSAFDFIDKGLSEEDFIKQ 121 + E ++ +I+K P ++ ++ + FM + A+D++ K + I Sbjct: 57 MPDEN--AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 122 IERDLAYLYER 132 I R LA R Sbjct: 115 IGRALAEPKRR 125
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.019 Identities = 57/348 (16%), Positives = 114/348 (32%), Gaps = 54/348 (15%) Query: 95 WNLLYRILTFFVIPIFGLEYNQLINEEQLILNITAFVASLLSLWIPSLLHYKFKRLRKFR 154 W + + + V + G + L +L I SL+ L + KR + Sbjct: 13 WYC--QGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLK 70 Query: 155 LNEADKHLVIFLNISMIFYIVFVQFFSYLEITHNV-------VNLSYRKLIVIIYIILFL 207 LN L + +I + FV S + + +I + ++ F+ Sbjct: 71 LNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFM 130 Query: 208 SSVNILDRNLRERIQQQLSEQRELQLRNMSDYSQHIEELYNELRSFRHDYINILRSLKLG 267 S+ + + +Q E + ++ +M+ +Q L +LK Sbjct: 131 WSLLYFGWHFFKNYKQA--EIDQWKMASMAQEAQ-------------------LMALKAQ 169 Query: 268 IDTHDL-PAIEQIYNQVIKDSGQALNQSKYDLGRL--SNIHNDALKSVLSAKFLEAQSKG 324 I+ H + A+ I +++D +A + L L ++ + V A L Sbjct: 170 INPHFMFNALNNIRALILEDPTKA-REMLTSLSELMRYSLRYSNARQVSLADELTVVDSY 228 Query: 325 IEIG-------LEVPQEIKPQGMELLDFITIVSILADNAIEAAVETS--HPVVSFAFLEQ 375 +++ L+ +I P M++ +V L +N I+ + + + Sbjct: 229 LQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKD 288 Query: 376 ENRQIFIVENTIKEFSIHSDTIFKKGFSTKGENRGLGLSNVQNIISHY 423 VENT E+ G GL NV+ + Sbjct: 289 NGTVTLEVENTGS-----------LALKNTKESTGTGLQNVRERLQML 325
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 29.4 bits (66), Expect = 0.012 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 214 LFEKAPTSQASKGIGYKELFPYFEGQISLEEAVDKLKQNTRRFAKRQ 260 F +P Y+ P+ E +IS++EA++K Q R F RQ Sbjct: 98 FFIMSPVIDKIYVDAYQ---PFSEEKISMQEALEKGAQPLREFMLRQ 141
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.9 bits (64), Expect = 0.049 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 7/78 (8%) Query: 211 SPPYTSPGALKKAQDLTRKLTKFGGNIQFIEVPFTEIQ---EEIKSKAPEAYLMTLTRRF 267 P T ALK A GN+Q+ TE ++ S+ + L L Sbjct: 547 KPDMTLKEALKIAFGFNEP----NGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATN 602 Query: 268 MMRITDRIREERGGQVII 285 + + D+I+ ++I Sbjct: 603 IYTVLDKIKLNAKMNILI 620
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 26.2 bits (57), Expect = 0.028 Identities = 12/48 (25%), Positives = 20/48 (41%) Query: 3 TYAIIKTGGKQVKVEVGQAIYVEKLDVEAGQEVTFNEVVLVGGDKTVV 50 T + TG + ++VG + K + F V +V G T+V Sbjct: 454 TLIVEGTGDNKGSLKVGDGTVILKQQTNGSGQHAFASVGIVSGRSTLV 501
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 29.6 bits (66), Expect = 0.009 Identities = 10/40 (25%), Positives = 25/40 (62%) Query: 174 VKSVRARVTNIIDELPEKITVEEFRDLLLEYMKKEYPEMT 213 ++++R+ T + +EL +++ ++EF+D L + K +T Sbjct: 36 IRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLT 75
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 27.9 bits (62), Expect = 0.045 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 13/67 (19%) Query: 63 PHHSLIRIKVWNDGHMTYRGHLKRKDRTPIFVVGFQNNCDGYKNIKKQAAMFNAAITVLR 122 ++LI + + D ++ D T ++V+G++ + FN A Sbjct: 68 QRYALIHLTNYADETISVA-----IDVTNVYVMGYRAG--------DTSYFFNEASATEA 114 Query: 123 EKYAFTS 129 KY F Sbjct: 115 AKYVFKD 121
>INTIMIN#Intimin signature. Length = 939 Score = 28.1 bits (62), Expect = 0.046 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 9/74 (12%) Query: 113 YYRTPENGQLDQIFGDFEIKDLD-KTAENKKLVRRFLTEIFQNGELEQWSDYVADDLIQH 171 +Y + + FG + +D + N +RF F + ++ ++ D Sbjct: 234 FYDSEKM----LAFGQVGARYIDSRFTANLGAGQRF----FLPENMLGYNVFIDQDFSGD 285 Query: 172 NHEIGQGSAAYKDY 185 N +G G ++DY Sbjct: 286 NTRLGIGGEYWRDY 299
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 5e-05 Identities = 55/321 (17%), Positives = 104/321 (32%), Gaps = 16/321 (4%) Query: 39 VASAQEVSPSAQDQAAQVAEAARVSDEKESEKPATEAQAEPEKNAASANANAQATEAKDQ 98 V +PS + +++E+ ATE A+ + A A +N +A ++ Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE 1084 Query: 99 VAPSTEEVAKAEEAAVSKDENSEETSAPKEAKAEEKAEPK-EEKSEPKTASSET-NAAAQ 156 VA S E + + + E+ K + + PK + PK SET A+ Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 157 PKRSGTSGFRSVSGTSGFRNTGATRQGSDYTVTQDGNLATVQANALKT-QLDRAASENLP 215 P R S T T Q + T + T + P Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 216 VTPNQLRNFGTATTDEERRRLERQAADLQNTEAQAMNRKISDYLTAKQRAQQLTGQEGSL 275 T N ++ + R R ++ N E + + R+ S Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSV-PHNVEPATTS--------SNDRSTVALCDLTS- 1254 Query: 276 QQIAPQNLVFSDEPNATAKIRLAQGDWFVKDSTLLSRNQYVREALDSRSYSEWRDGTTTQ 335 N V SD + L G + + L N + + + S ++ +++Q Sbjct: 1255 ---TNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQ 1311 Query: 336 PNAVITRADTSQPAAERIIKD 356 +++ +Q ++ I + Sbjct: 1312 YRRFSSKSTQTQLGWDQTISN 1332
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.7 bits (139), Expect = 1e-12 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 1 MKKETDELNEKILESARSEFLAYGYQDASLRRICRAAGLTTGALYKRYESKDSLFTALLE 60 K+E E + IL+ A F G SL I +AAG+T GA+Y ++ K LF+ + E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 PTLTALDQYGQEQKRRDYAFLEEGHLSDMWAHRLEDLQS-----LMRILYEHKDIM 111 + + + + E + + L ++ H LE + L+ + HK Sbjct: 65 LSESNIGELELEYQAKFPGDPLSV-LREILIHVLESTVTEERRRLLMEIIFHKCEF 119
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 48.3 bits (115), Expect = 2e-08 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 127 GAIPIINENDTVSIEELKVGDNDTLSAQVAAMVQADLLVLLTDVDGLYTANPASDPTARR 186 G +P+I E+ + E V D D ++A V AD+ ++LTDV+G + Sbjct: 195 GGVPVILEDGEIKGVE-AVIDKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQW 251 Query: 187 LERIETISSDLIDMAGGAGSSNGTGGMLTKIKAA-TLATMSGVPVYICSSLKSNALLEAA 245 L ++ G + G M K+ AA G I K+ LE Sbjct: 252 LREVKVEELRKYYEEGHFKA----GSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGK 307 Query: 246 SQTR 249 + T+ Sbjct: 308 TGTQ 311
>TOXICSSTOXIN#Staphylococcal toxic shock syndrome toxin signature. Length = 234 Score = 29.2 bits (65), Expect = 0.040 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 121 LKDKQIGVFFEEENIDTLTMDGELLLTILSSVAQQEVENTSAHVKKGLKMKMQRGELIGF 180 K +++ + + T +G + +S V E ++ LK+K+ G Sbjct: 97 TKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTE--KLPTPIELPLKVKVH-----GK 149 Query: 181 QGCLGYDYNQDTKSISINEKEAKIVRYIFERY 212 L Y D K ++I+ + +I + + + Sbjct: 150 DSPLKYGPKFDKKQLAISTLDFEIRHQLTQIH 181
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 25.9 bits (56), Expect = 0.017 Identities = 6/47 (12%), Positives = 17/47 (36%) Query: 1 MTIIERLEEKVTRQESKVARETEKLAAYKEQLETAMFATFKRRQSIS 47 ++ ++ +T ++ + A + E A + RQ + Sbjct: 197 ISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAA 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 7e-05 Identities = 34/197 (17%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 526 DTKDRMVDTASGLKEQVKDLPTNARYA-VYQGKSKVKENVRDLTSSISQTKADRASG--R 582 D + KE ++ N + V Q S+ KE T + + + + Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 583 KEQQEQRRKT--IAKRRSEMEQVKQKKQPASSVHERPTTRQEQYHDEQTSKQSNIQTSYK 640 ++ QE + T ++ ++ + E V+ + +PA PT ++ QT+ ++ Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARE--NDPTVNIKEP-QSQTNTTAD------ 1167 Query: 641 ESQQAKQERPAVKSDFSSPKVERQGNTVQEKTVQKPATSTTTADRTSQRPITKERPSTVQ 700 Q AK+ V+ + GN+V E P +T + + + +P Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVE----NPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 701 RVPLQNTRSRPPIKTAT 717 R +++ T + Sbjct: 1224 RRSVRSVPHNVEPATTS 1240
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 1113 bits (2880), Expect = 0.0 Identities = 622/639 (97%), Positives = 629/639 (98%) Query: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 181 GNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPVYHGSAKSNIGIDNLIEVITNKFYS 240 GNDDLLEKYMSGKSLEALELEQEESIRF NCSLFPVYHGSAK+NIGIDNLIEVITNKFYS Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240 Query: 241 STHRGPSELCGNVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING 300 STHRG SELCG VFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING 300 Query: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREM 360 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR++IENP PLLQTTVEPSKP+QREM Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREM 360 Query: 361 LLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIY 420 LLDALLEISDSDPLLRYYVDS THEIILSFLGKVQMEV ALLQEKYHVEIE+KEPTVIY Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Query: 421 MERPLKNAEYTIHIEVPPNPFWASIGLSVAQLPLGSGVQYESSVSLGYLNQSFQNAVMEG 480 MERPLK AEYTIHIEVPPNPFWASIGLSV+ LPLGSG+QYESSVSLGYLNQSFQNAVMEG Sbjct: 421 MERPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 481 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL Sbjct: 481 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 541 SFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 SFKIYAPQEYLSRAY DAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 601 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT 639 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT Sbjct: 601 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKIT 639
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.043 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 19/118 (16%) Query: 92 DRRLPHARKRMKIAKKQFKEAKAQSKEERKERRKERKTNQKFLYGQELKHKSNFFFQGKS 151 D L A + K + + + A+ +E+ + RK K YG + + Sbjct: 422 DAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFKD-----YGHD-------YHPAPK 469 Query: 152 LEELKAKKEVKAAKENLKSTKQAYKSKKVSRKAKTFLYVLGREGGELASENEDLEGYR 209 E +K ++K K+ KQ K+ GR+ E S++ +LEGYR Sbjct: 470 TENIKGLGDLKPGIP--KTPKQNGGGKRKRWTGDK-----GRKIYEWDSQHGELEGYR 520
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 30.4 bits (68), Expect = 0.011 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 11/71 (15%) Query: 12 FNGKEVITDSLELDWIDKKDCIVIRAYKNGDSIDSLV-------TEIGEGLQAFFKLKLI 64 FNG+ D +I + V+R Y+NG+SI + EI E A FK Sbjct: 101 FNGR----DKDSTSFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRA 156 Query: 65 RTKDEAFQTDY 75 + EAF+ Y Sbjct: 157 INEKEAFECIY 167
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 7e-06 Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 12/125 (9%) Query: 39 ASQGWVQAQTSLAFSISFAMVPIGMIIFGPKVDSLGPKKFVFLGGILFGAGMFATGFATS 98 AS WV L FSI G ++G D LG K+ + G I+ G S Sbjct: 49 ASTNWVNTAFMLTFSI-------GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHS 101 Query: 99 LPVLYLTYGVVLGLGIGSAYGASTSVATKWFPDKK-----GLAGGLTAAGFGLGPLIIGP 153 L + + G G + V ++ P + GL G + A G G+GP I G Sbjct: 102 FFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGM 161 Query: 154 LAKTL 158 +A + Sbjct: 162 IAHYI 166 Score = 29.8 bits (67), Expect = 0.020 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 18/134 (13%) Query: 65 IFGPKVDSLGPKKFVFLGGILFGAGMFATGFATSLPVLYLTYGVVLGLGIGSAYG--AST 122 I G VD GP + +G F ++T +V LG S ST Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 123 SVATKWFPDKKGLAGGL----TAAGFGLGPLIIGPLAKTLI-----------ASMGVYST 167 V++ + G L + G G I+G L + S +YS Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSN 431 Query: 168 FKVLGIALLVVICC 181 +L + ++VI Sbjct: 432 LLLL-FSGIIVISW 444
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 33.6 bits (77), Expect = 0.001 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Query: 318 RTAALLQKMRA---------GDATQFTIEQALKALTIEGAKALGLEKKIGSLEAGKQADF 368 RT KM+ GD F +++ + TI A A GL +IGSLE GK+AD Sbjct: 375 RTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEIGSLEVGKRADL 434 Query: 369 IAIQPK 374 + P Sbjct: 435 VLWNPA 440
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 125 bits (316), Expect = 1e-41 Identities = 84/91 (92%), Positives = 88/91 (96%) Query: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARK 60 MANKQDLIAKVAEATELTKKDSAAAVDAVF+AV+ YL+KGEKVQLIGFGNFEVRERAARK Sbjct: 1 MANKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARK 60 Query: 61 GRNPQTGKEITIAASKVPAFKAGKALKDAVK 91 GRNPQTG+EI I ASKVPAFKAGKALKDAVK Sbjct: 61 GRNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 59.2 bits (143), Expect = 3e-11 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 1/115 (0%) Query: 2768 KVEEGTSLTFVGKWAFEAKQTPSPQPQPEPAPQPEPEPAPQPQPVPKPQPQPSPVPPVTP 2827 + S+T V E Q P P+P P+PEPEP P+P P P P P P Sbjct: 40 APAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVIEKPKPKPKP 98 Query: 2828 EVKPDQETDSADKAQPNQLVKPESKPVSNDKPAVPTPAGDKAKQATLPNTGSTSP 2882 + KP ++ K + + P N PA T + A + + ++ P Sbjct: 99 KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 153 Score = 50.0 bits (119), Expect = 5e-08 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 5/104 (4%) Query: 2797 PAPQPEPEPAPQPQPVPK-PQPQPSPVPPV-TPEVKPDQETDSADKAQPNQLVKPESKPV 2854 PA P+ P P+P+P P+P ++ K +P + K + +P Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 2855 SNDKPAVP---TPAGDKAKQATLPNTGSTSPVSIVGATTSAILA 2895 + KP +P + A +T + + V + S A Sbjct: 112 RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 155 Score = 33.4 bits (76), Expect = 0.009 Identities = 19/98 (19%), Positives = 24/98 (24%), Gaps = 1/98 (1%) Query: 2800 QPEPEPAPQPQPV-PKPQPQPSPVPPVTPEVKPDQETDSADKAQPNQLVKPESKPVSNDK 2858 P P V P P V P V + P + KP K Sbjct: 38 LPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPK 97 Query: 2859 PAVPTPAGDKAKQATLPNTGSTSPVSIVGATTSAILAS 2896 P + + + P S T A L S Sbjct: 98 PKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTS 135
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 91.5 bits (227), Expect = 1e-26 Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 5/145 (3%) Query: 1 MKKKDRLEKIRRFVSEFEIGTQEEIVEHLRESGITATQATVSRDIKELGIVKIPFKDNTY 60 M K R KIR ++ EI TQ+E+V+ L++ G TQATVSRDIKEL +VK+P + +Y Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 IYELPK-----TASNSLKLAENNILACQNLGNMLNLNLIPGSAAVVKRHLSKEFAEEIFS 115 Y LP S + + + + +++ L +PG+A + + EEI Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIMG 120 Query: 116 IIADNDSILIVAVSESAAQKVTAEI 140 I +D+ILI+ + + V +I Sbjct: 121 TICGDDTILIICRTHDDTKVVQKKI 145
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.006 Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 27/176 (15%) Query: 11 RTTRRPTKAELERQKA---IRRMIVTFVLALALLFAALKLGAFGVTIY--------NLIR 59 + RRP + E A R + +A+ F +G ++ + Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDA 245 Query: 60 LLVG-SLAYVAILTSLFYLFFFKWLHKHEGKISGFISFFLGLSLIFQAYFVHVLHLKGQV 118 +G SLA IL SL + G+ + + G + Sbjct: 246 TTIGISLAAFGILHSLAQAMITGPVAARLGER-RALMLGMIADGT------------GYI 292 Query: 119 LSTTLTRVLTDLLAFKVSSFAGGGLIGAALYAPISFLFSNIGSYFIGLLLILLGAL 174 L TR + A GG+ AL A +S + L L +L Sbjct: 293 LLAFATRGWMAFPIMVL--LASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSL 346
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.009 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 58 VLNGLVEKYLSERKMIVTGLLIFSLCGFVPLFNKEYWVIFASRLIFGMGVGLLNAKAISI 117 VL L +++ R +++ L ++ + WV++ R++ G+ G A A + Sbjct: 62 VLGALSDRF-GRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAY 119 Query: 118 ISERYEGKERIQTLGLRGSAEVVGTAL 144 I++ +G ER + G + G Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVA 146 Score = 30.2 bits (68), Expect = 0.013 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 10/114 (8%) Query: 2 KKFMEKVSILSLSLVLTTSFS---ISSAQSAMFAYYKDLPESWIELLVSLPSAGIMLM-- 56 F + ++ ++ F + +A++ + + W + + A ++ Sbjct: 201 ASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHS 260 Query: 57 ---LVLNGLVEKYLSERKMIVTGLLIFSLCGFVPL-FNKEYWVIFASRLIFGMG 106 ++ G V L ER+ ++ G +I G++ L F W+ F ++ G Sbjct: 261 LAQAMITGPVAARLGERRALMLG-MIADGTGYILLAFATRGWMAFPIMVLLASG 313
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 31.1 bits (70), Expect = 0.039 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 221 PNLDKAEITPMIEVQTEENRLVFEGMVFDLEQKVTRTGRVLLNFKMTDYTSSFSLQKWMK 280 A + E N++ G+ FD+E + + N K + +T+ +++ W+ Sbjct: 133 KQYIDAHREEL-----ERNQIKIIGIDFDIETEYKWFYSLQFNIKESAFTTGYAIASWLS 187 Query: 281 NEEEAKK 287 ++E+K+ Sbjct: 188 EQDESKR 194
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.5 bits (61), Expect = 0.048 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Query: 49 FLERDFGAALIMTI---IALIIANSVYHFLAISTGTLVMGGVLACIGL 93 FL ++ A LI TI + L+ ++ S TL M G++ IGL Sbjct: 358 FL-QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404
>adhesinb#Adhesin B signature. Length = 310 Score = 32.9 bits (75), Expect = 0.004 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 571 GIEYRSNQSPQDKYELVKTLKDEGKKVIMVGDGVNDAPSLALA-DVGIAIGAGTQVALDS 629 I +P LV+ L+ + V V+D P ++ D I I A ++ DS Sbjct: 225 EINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTVSKDTNIPIYA--KIFTDS 282 Query: 630 ADVILTQSDPGDIESFIELAHKTTRKMKQNL 660 + + + GD S+ + K+ + L Sbjct: 283 ---VAEKGEEGD--SYYSMMKYNLEKIAEGL 308
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 4e-21 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 RVLLVDDEYMITEGLKVLIPFEKWNMEVVSTANDAETALAYIKDNPVDLVITDVNMPGMN 62 +L+ DD+ I L + V ++A T +I DLV+TDV MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAG---YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLQMIEQMKNSLPNAAFIILSGYQEFEYVKTALNLQVADYLVKPVDKVELAAILEKLERE 122 ++ ++K + P+ +++S F A DYL KP D EL I+ + E Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 180 bits (459), Expect = 3e-54 Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 23/220 (10%) Query: 327 RDIYRLEISQKDANMRALQAQINPHFMYNTLEFIRMYAVMQRQEELADIIYEFSSLLRNN 386 D +++ ++A + AL+AQINPHFM+N L IR +++ + +++ S L+R + Sbjct: 149 IDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRA-LILEDPTKAREMLTSLSELMRYS 207 Query: 387 I--SDESRSSLKNELEFCRKYSYLCMVRHPKSVAYGFKIEEGLEEMMIPKFSIQPLIENY 444 + S+ + SL +EL Y L ++ + + +I + ++ +P +Q L+EN Sbjct: 208 LRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENG 267 Query: 445 FAHGIDYRRQDNVISVKAQKIDGAVRLMIQDNGRGIPADRLAEIQDILASRELMDAQNRE 504 HGI Q I +K K +G V L +++ G +N + Sbjct: 268 IKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA-------------------LKNTK 308 Query: 505 QQRSIGIRNIHERFLLFFGDRYSIRLKSQKEQGVTYIIEI 544 + G++N+ ER + +G I+L K+ V ++ I Sbjct: 309 ESTGTGLQNVRERLQMLYGTEAQIKLSE-KQGKVNAMVLI 347
>PF07132#Harpin protein (HrpN) Length = 356 Score = 24.3 bits (52), Expect = 0.049 Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 5 EKFNQAKGAVKEGVGKVIGDEKLEKEGA 32 +KF +A G +K V G+ L G Sbjct: 303 DKFMKAVGMIKSAVAGDTGNTNLHARGN 330
>PF05043#Transcriptional activator Length = 493 Score = 544 bits (1404), Expect = 0.0 Identities = 401/493 (81%), Positives = 451/493 (91%) Query: 1 MRELLSKKSHRQLELLELLFKNKRWFHISELAELLNCTERSVKDELSHVKSSFPQLIFHS 60 MR+LLSKKSHRQLELLELLF++KRWFH SELAELLNCTER+VKD+LSHVKS+FP LIFHS Sbjct: 1 MRDLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHS 60 Query: 61 STNGIRIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGYETESICKEFYISSSSLYRI 120 STNGIRIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEG + ESICKEFYISSSSLYRI Sbjct: 61 STNGIRIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSSSLYRI 120 Query: 121 ISHINKIIKKQYNFKISLNPARIIGDEIDIRYFFAQYFSEKYYFLEWPFTDFSVEPLCKL 180 IS INK+IK+Q+ F++SL P +IIG+E DIRYFFAQYFSEKYYFLEWPF +FS EPL +L Sbjct: 121 ISQINKVIKRQFQFEVSLTPVQIIGNERDIRYFFAQYFSEKYYFLEWPFENFSSEPLSQL 180 Query: 181 LALVYKETAFPVNFATQRMLKLLLVTNLYRIKFGHFLEVEKNSFNNQLLESFMQAEGIED 240 L LVYKET+FP+N +T RMLKLLLVTNLYRIKFGHF+EV+K+SFN+Q L+ MQAEGIE Sbjct: 181 LELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHFMEVDKDSFNDQSLDFLMQAEGIEG 240 Query: 241 IVASFDSEYHISLNKEVIGQLFVSYFQKMFFIDENLFMSCAKTDSYVKNSYQLLSDLIDQ 300 + SF+SEY+ISL++EV+ QLFVSYFQKMFFIDE+LFM C K DSYV+ SY LLSD IDQ Sbjct: 241 VAQSFESEYNISLDEEVVCQLFVSYFQKMFFIDESLFMKCVKKDSYVEKSYHLLSDFIDQ 300 Query: 301 IESKYNLKIDNNDNLIWHLHNTAHLHRQELSTEFILFDQKGNTIKNFQNIFPQFVSDIKK 360 I KY ++I+N DNLIWHLHNTAHL+RQEL TEFILFDQKGNTI+NFQNIFP+FVSD+KK Sbjct: 301 ISVKYQIEIENKDNLIWHLHNTAHLYRQELFTEFILFDQKGNTIRNFQNIFPKFVSDVKK 360 Query: 361 GIEHYLETLGIDNNSMKVNHLSYTFITHSKHLVLNLLQNQPKLKVLVMSNFDQYHAKSVA 420 + HYLETL + ++SM VNHLSYTFITH+KHLV+NLLQNQPKLKVLVMSNFDQYHAK VA Sbjct: 361 ELSHYLETLEVCSSSMMVNHLSYTFITHTKHLVINLLQNQPKLKVLVMSNFDQYHAKFVA 420 Query: 421 ETLSYYCSNNFELEVWNKLELSIDSLKESPYDIIISNFIIPPIENKRLIYSNNINTVALI 480 ETLSYYCSNNFELEVW +LELS +SL++SPYDIIISNFIIPPIENKRLIYSNNINTV+LI Sbjct: 421 ETLSYYCSNNFELEVWTELELSKESLEDSPYDIIISNFIIPPIENKRLIYSNNINTVSLI 480 Query: 481 SLLNAMMFIRLDE 493 LLNAMMFIRLDE Sbjct: 481 YLLNAMMFIRLDE 493
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.2 bits (62), Expect = 0.037 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 95 LYLGEKQYRLNDGAFLALDGTAYYTMERQSVGKAIFGGQ 133 L +G K+YR+ D L L+ + +++ R+ VGK IF G+ Sbjct: 34 LNIGGKRYRIIDNQVLRLNPHSGFSLFREGVGK-IFSGK 71
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.016 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 42 MILYGPPGIGKTSIASAIAGTTKY--AFRTFNATVDSKKRLQ-----EIAEEAKFS 90 ++L G GIGK+++ + + G + DS +++ E++E F Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFR 654
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 24.8 bits (54), Expect = 0.019 Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 3 FIKDVFVLLRDTTWPTRKERWTDFLSVMEYTAFFAVVIYIFDKVV 47 F ++ +R WPTR+E L V TA +++++ D ++ Sbjct: 71 FAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGIL 115
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 523 bits (1348), Expect = 0.0 Identities = 208/395 (52%), Positives = 280/395 (70%), Gaps = 6/395 (1%) Query: 3 KTISINAGSSSVKWQLYSMPEEKVLAKGLIERIGLKDSISTVKFDGRSERQTLDIADHTQ 62 K + IN GSSS+K+QL + VLAKGL ERIG+ DS+ T +G + D+ DH Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 63 AVKILLDDL--KRFEIIQSYDEITGVGHRVVAGGEYFKESALVTDDVLKKIEELSLLAPL 120 A+K++LD L + +I+ EI VGHRVV GGEYF S L+TDDVLK I + LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 121 HNPANADGIRAFKEILPDITSVAVFDTSFHTTMPEKAYRYPLPTKYYTENKVRKYGAHGT 180 HNPAN +GI+A +I+PD+ VAVFDT+FH TMP+ AY YP+P +YYT+ K+RKYG HGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 181 SHEYVAHEAAKLLGKPIEELKLITCHIGNGASITAVDKGRSVDTSMGFTPLGGVMMGTRT 240 SH+YV+ AA++L KPIE LK+ITCH+GNG+SI AV G+S+DTSMGFTPL G+ MGTR+ Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 241 GDIDPAIIPYLMQHTDDFNTPEDISRILNRESGLLGVSEKSSDMRDIHE-AMRAGDEKAQ 299 G IDP+II YLM+ + + E++ ILN++SG+ G+S SSD RD+ + A + GD++AQ Sbjct: 242 GSIDPSIISYLMEKEN--ISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQ 299 Query: 300 LANEIFVDRIQKYIGQYLAVLNGADAIIFTAGIGENSVTIRRMVIEGISWFGCDVDPEKN 359 LA +F R++K IG Y A + G D I+FTAGIGEN IR +++G+ + G +D EKN Sbjct: 300 LALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKN 359 Query: 360 -FFGATGDISTEAAKVRVLVIPTDEELVIARDVER 393 G IST +KV V+V+PT+EE +IA+D E+ Sbjct: 360 KVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEK 394
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 45.6 bits (108), Expect = 2e-09 Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 5 KTLKVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKDAVSDTGNAAVVKVVESQAELYELK 64 T K + FTL+E++VV++II VL L VPNL K+ + + +E+ ++Y+L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 65 N 65 N Sbjct: 63 N 63
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 94.1 bits (234), Expect = 1e-23 Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 26/300 (8%) Query: 54 VAEMRSGLAAGQSFSQIMKRLG--FSDNVVTQLSLSELHGNLNLSLGKIEDYLENLSKVR 111 +A +RS + G S + MK F ++ E G+L+ L ++ DY E ++R Sbjct: 107 MAAVRSKVMEGHSLADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMR 166 Query: 112 KKLIEVGTYPLMLLGFLVLIMLGLRNYLLPQLDSQNMATQFIHY---LP---QIFLGG-- 163 ++ + YP +L + ++ L + ++P++ QFIH LP ++ +G Sbjct: 167 SRIQQAMIYPCVLTVVAIAVVSILLSVVVPKV-----VEQFIHMKQALPLSTRVLMGMSD 221 Query: 164 ----------VLVICLLIGGGWFYYRKSSKMRFFSRLAKFPFVGALVRAYLTAYYAREWG 213 + ++ + ++ ++ F RL P +G + R TA YAR Sbjct: 222 AVRTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLS 281 Query: 214 NMIGQGLELSQIFLIMQDQPS-QLFQELGRDLETALGAGQGYAEKVGTYPFFKKELALII 272 + + L Q I D S + A+ G + + F + +I Sbjct: 282 ILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMI 341 Query: 273 EYGEVKSKLGDELELYAEKTWEEFFLRINRAMNLIQPLVFVFVALVIVLLYAAMLLPIYQ 332 GE +L LE A+ EF ++ A+ L +PL+ V +A V++ + A+L PI Q Sbjct: 342 ASGERSGELDSMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQ 401 Score = 31.7 bits (72), Expect = 0.003 Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 2/135 (1%) Query: 206 AYYAREWGNMIGQGLELSQIFLIMQDQPSQ-LFQELGRDLETALGAGQGYAEKVGTYP-F 263 A R+ ++ + L + + Q + +L + + + G A+ + +P Sbjct: 71 ALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGS 130 Query: 264 FKKELALIIEYGEVKSKLGDELELYAEKTWEEFFLRINRAMNLIQPLVFVFVALVIVLLY 323 F++ ++ GE L L A+ T + +R +I P V VA+ +V + Sbjct: 131 FERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSIL 190 Query: 324 AAMLLPIYQNMEIQL 338 ++++P I + Sbjct: 191 LSVVVPKVVEQFIHM 205
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 124 bits (312), Expect = 2e-39 Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 4/142 (2%) Query: 1 MRKSERHQLIKWMIKEEKLGTQKDIQKRLEDEGIFVTQTTLSRDLREIGLTKLKRDGQVY 60 M K +RH I+ +I ++ TQ ++ L+ +G VTQ T+SRD++E+ L K+ + Y Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 YVLAHEAEELDLAGFLASHVQ----AVSRAEFTLVFRTGLGEATVLANVVDGSLDSRILG 116 + + L + + A +V +T G A + ++D I+G Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIMG 120 Query: 117 TVAGANTLLVICRDQDAAREIE 138 T+ G +T+L+ICR D + ++ Sbjct: 121 TICGDDTILIICRTHDDTKVVQ 142
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.007 Identities = 7/21 (33%), Positives = 11/21 (52%) Query: 4 CVYIVSGPPGVGKSTVSKELA 24 ++ G G+GKST+ L Sbjct: 597 YSVVLEGTGGIGKSTLINTLV 617
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.002 Identities = 33/264 (12%), Positives = 92/264 (34%), Gaps = 1/264 (0%) Query: 68 EEVDESPAVESEASLEQEKMAAKSQAASTTESAETSISSDSMKKRGLKSTADSISLSLSI 127 E PA + + + Q + T E E + + + R + A S + + Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 128 ESKKASRSLEVTESQTHSLEVGQSDSKETDTSASLSIAQSYAFEQSILEENRASLSLSIF 187 ++ A E E+QT + + KE Q S + + S ++ Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ-SETVQ 1140 Query: 188 ESVSQSMAAEESLSADNEASLSLSAAESVAQSIAIQKSISAEIEASTSLSVAESVSQSIA 247 + + +++ S + + A++ + ++ + ST+++ SV ++ Sbjct: 1141 PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE 1200 Query: 248 IQESISAEFEASTSLSVAESVAQSIAIQKSISAEIEASKSLSVAESISQSVAIQESIRAE 307 + + ++ S +++ A+ S + +++ + A Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAV 1260 Query: 308 IEASNSLSVAESISQSIAIQESIS 331 + + + + +++ A+ + IS Sbjct: 1261 LSDARAKAQFVALNVGKAVSQHIS 1284 Score = 30.4 bits (68), Expect = 0.040 Identities = 46/298 (15%), Positives = 105/298 (35%), Gaps = 14/298 (4%) Query: 321 SQSIAIQESISAETEASTSLSVAESVSQSIAIQESISAEIEASISLSVAE---SISQSVA 377 + +I +I A+ + S + + + A + + +VAE S++V Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT-PSETTETVAENSKQESKTVE 1052 Query: 378 IQESISAELEASLSLSVAESVSQSIA---IQESISAELEASTSLSVAKSVSQSIAVQESI 434 E + E A E+ S A E + E + + + ++ +E Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 435 SAEIE-----ASYSLSVAESISQSLAIQESISAEVEASASLSVAESVSQSIAIQESISAE 489 E E + V+ QS +Q E ++++ E SQ+ ++ Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 490 IEASYSLSVAESISQSLAIQESISAEFEASNSLSIAESVSQSIAVQESISAELEASNSLS 549 E S ++ + S ++ S+ E + + +V+ + + + Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Query: 550 VEESQVLDRAIEQSIITENEVSTSLSIVESEALSKAIEQSISAENEASISLSVAESEA 607 E ++ + ST+ + V S+A +KA Q ++ ++S +++ E Sbjct: 1233 NVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA--QFVALNVGKAVSQHISQLEM 1288
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 0.001 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDITEGELYIDQNLVNDIAPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ ++ I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 31.6 bits (71), Expect = 0.006 Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 20/236 (8%) Query: 122 TIDKIGKDRFNKTALNEAKIGSDYYSVPLYSHAQVMWVRTDLLKQHNIEVPKTWDELYEA 181 T DK +D+ + + + P+ A + DLL PKTW+E+ Sbjct: 106 TPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNP----PKTWEEIPAL 161 Query: 182 SKKLTADG----VYGMSVPLGTNDFMATRFLNFYVRSAGGSLLTKDKKVDLTSDLAQEGI 237 K+L A G ++ + P T +A + + G KD VD + A+ G+ Sbjct: 162 DKELKAKGKSALMFNLQEPYFTWPLIAADG-GYAFKYENGKYDIKDVGVD--NAGAKAGL 218 Query: 238 KYWVKMYKEVSPKDSLNYNVLQQATLFYQGKTAFDFNSGFHIGGVEANSPQLLESIDAYP 297 + V + K +Y++ + A F +G+TA N + ++ + ++ + P Sbjct: 219 TFLVDLIKNKHMNADTDYSIAEAA--FNKGETAMTINGPWAWSNIDTS--KVNYGVTVLP 274 Query: 298 IPKVKASDKDQGIETSNVPMVVWKNSKHPKVAKAFLE-YLYEQDNYVGFLDSTPVG 352 K + S G+ ++ + S + ++AK FLE YL + P+G Sbjct: 275 TFKGQPSKPFVGVLSAGINAA----SPNKELAKEFLENYLLTDEGLEAVNKDKPLG 326
>PF01540#Adhesin lipoprotein Length = 475 Score = 28.9 bits (64), Expect = 0.030 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 211 GTYGAMPELFLKLNQLIADKELERAKELQFAINDIIGKLTSAHGNMYAVIKEVLKLNE 268 G+YG P + KL+ + E AK Q ++ K+ + + KE+LKL+E Sbjct: 83 GSYGDYPAIISKLSAAV-----ENAKSEQQKVDQANKKIADENLKIKEGAKELLKLSE 135
>PF03309#Bvg accessory factor Length = 271 Score = 32.0 bits (73), Expect = 0.002 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 5 VTIDIGGTNIKYGLID---DQETLVEAHEIPTEAHKGGPEIMRKVQKIVADYAQAGSIEG 61 + ID+ T+ GLI D +V+ I TE E+ + ++ D A+ + G Sbjct: 3 LAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAER--LTG 60 Query: 62 ICISS 66 S Sbjct: 61 ASGLS 65
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.017 Identities = 14/46 (30%), Positives = 23/46 (50%) Query: 2 SEETKNEEVKEEEVVEATEEAVETVEEADETTPEKSELELANERAE 47 ++ET+ E KE VE E+A E+ E S++ E++E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 148 bits (375), Expect = 8e-42 Identities = 72/367 (19%), Positives = 136/367 (37%), Gaps = 66/367 (17%) Query: 2 SKIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVV-------SFKNGEIIVGDAAK 54 S + IDLGT N+ + V I+ N PSVV VG AK Sbjct: 10 SNDLSIDLGTANTLIYVKGQ---GIVLN------EPSVVAIRQDRAGSPKSVAAVGHDAK 60 Query: 55 RQAVTNPDTVISIKSKMGTSEKVSANGKEYTPQEISAMILQYLKGYAEDYLGEKVTKAVI 114 + P + +I+ K + +++ ++ + + + ++ Sbjct: 61 QMLGRTPGNIAAIRPM-----KDGVIADFFVTEKMLQHFIKQVHS---NSFMRPSPRVLV 112 Query: 115 TVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKEEKILVFDLGGGTF 174 VP +R+A +++ + AG ++ EP AAA+ GL + +V D+GGGT Sbjct: 113 CVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGL-PVSEATGSMVVDIGGGTT 171 Query: 175 DVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHLVAEFKKENGIDLSTDKMAMQRLKD 234 +V+++ L V + ++GGD FD+ II+++ + G + Sbjct: 172 EVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSLIG-------------EA 213 Query: 235 AAEKAKKDLS----GVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDL----------TR 280 AE+ K ++ G +I + E P + + + L Sbjct: 214 TAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-SNEILEALQEPLTGIVSAVM 272 Query: 281 DLVERTKVPVRQALSDAGLSLSDIDEVILVGGSTRIPAVVEAVKAETGKEPNKSVNPDEV 340 +E+ + +S+ G ++L GG + + + ETG + +P Sbjct: 273 VALEQCPPELASDISERG--------MVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTC 324 Query: 341 VAMGAAI 347 VA G Sbjct: 325 VARGGGK 331
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 42.7 bits (100), Expect = 1e-05 Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 5/202 (2%) Query: 4 DKKQRFSIRKLSLGVCSVLVGIALFGAGHALAEETSPAASQATSSVLAKEEAQTEVATEE 63 + + +S+RKL G SV V + + GAG L T+ ++ AT S E E A + Sbjct: 5 NTNRHYSLRKLKTGTASVAVALTVLGAG--LVVNTNEVSAVATRSQTDTLEKVQERADKF 62 Query: 64 TKVSEAPVEAVQGLATEAEKQALASEAPVAESKEVTAGKEKEVKEEAPASKETKVVEDLP 123 + L+ + ++ E K K + + + + +E Sbjct: 63 EIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARK 122 Query: 124 SQEDKKLKPKEIKFDTWQELLDWKPGAREDDEINRASVPLAERYQGHQINQQANPEAKVQ 183 + +K L+ + A E+ +N AK++ Sbjct: 123 ADLEKALEGAMNFS---TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIK 179 Query: 184 ALSNMNSKAKDHASIGGEELKA 205 L + + + + L+ Sbjct: 180 TLEAEKAALEARQAELEKALEG 201
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 32.6 bits (74), Expect = 0.006 Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 17/129 (13%) Query: 20 SVLVGFCLAGQVVSADEVQA----APASLVATTGPAVASAGEGVQEVAPVEAQTSSESLP 75 SV + + ++ Q APA ++ T A A ++ P +A + P Sbjct: 21 SVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPA-------DLEPPQAV---QPPP 70 Query: 76 EAVAKNSEEVKPQAVAAEAPAEKPVTEEPKLETVAEKSVTTTESASTNSDESKATLPSET 135 E V E E P E PV E K + D + Sbjct: 71 EPVV---EPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPAS 127 Query: 136 PKTEKTSQV 144 P Sbjct: 128 PFENTAPAR 136
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 86.2 bits (213), Expect = 3e-23 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 13/201 (6%) Query: 1 MNKKQQASLETSSKILAIARKHFSLKGYAETSLEEIVDELGMTRGALYHHFGNKKTLFTA 60 K +Q + ET IL +A + FS +G + TSL EI G+TRGA+Y HF +K LF+ Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 VLAQIQSELGSYVEKNALE-AQDSWEQLVEGCVAFVRFATLIENKR----ILLLDGPNVV 115 + +S +G + + D L E + + E +R I+ V Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 116 EWK---EWRRQDEANSFFHLREQLDILAKEGELI-SIDLDMAAHMISGALNEL----SLF 167 E + +R S+ + + L + L + AA ++ G ++ L Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 168 LAEKEGGAEVREAVRSLLRGF 188 + E R+ V LL + Sbjct: 182 PQSFDLKKEARDYVAILLEMY 202
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.5 bits (102), Expect = 2e-06 Identities = 42/251 (16%), Positives = 83/251 (33%), Gaps = 26/251 (10%) Query: 201 LIAKAKAERERKEVEAEQD---------KLANDKRVAADLEIAQKQNELKLKQAALKQEA 251 L +KA+R+ V + KL N DL + + + Sbjct: 942 LFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRY-DLYNPEVEKRNQTVDTTNITTP 1000 Query: 252 DIAQAKADAAKGIEAEIQRREQERVAAEANIMKQEK------EAEVKEREVKVREQELDA 305 + QA + EI R ++ V A E ++ + + V+ EQ+ Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 306 NIRKQAEAEKYAR-------QQAAEAQLIERQRQA-EAELFETQKEAEARKAQAEAEKFA 357 + E K A+ Q AQ ++ E ET + KA+ E EK Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 358 QLQEAEAIEAKGRAEAEAIRLKLEAEAEGLDKKAEAMKKMQEAAITEMIVDKLPEIARAV 417 ++ + + + + ++E ++ + E E + +K+ Q T ++ + + Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARE--NDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178 Query: 418 AEPLTKVDKIT 428 E Sbjct: 1179 VEQPVTESTTV 1189
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 405 bits (1042), Expect = e-145 Identities = 142/312 (45%), Positives = 203/312 (65%), Gaps = 5/312 (1%) Query: 4 RKIVVALGGNAIL--SSDPSAKAQQEALVETAKHLVKLIKNGDDLIITHGNGPQVGNLLL 61 +++V+ALGGNA+ S + + + +TA+ + ++I G +++ITHGNGPQVG+LLL Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 62 QHLAADSEKN-PAFPLDSLVAMTEGSIGFWLQNALQNALLDEGIEKDVASVVTQVVVDKN 120 A + PA P+D AM++G IG+ +Q AL+N L G+EK V +++TQ +VDKN Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 121 DPAFVNLSKPIGPFYSEEEAKVEAEKSGATFKEDAGRGWRKVVASPKPVDIKEIETIRTL 180 DPAF N +KP+GPFY EE AK A + G KED+GRGWR+VV SP P E ETI+ L Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 181 LNAGQVVVAAGGGGIPVIKEDNGHLAGVEAVIDKDFASQRLAELVEADLFIVLTGVDYVF 240 + G +V+A+GGGG+PVI ED G + GVEAVIDKD A ++LAE V AD+F++LT V+ Sbjct: 183 VERGVIVIASGGGGVPVILED-GEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAA 241 Query: 241 VNYNKPDQEKLEHVNVAQLEEYIKQDQFAPGSMLPKVEAAIAFVNGRPEGKAVITSLENL 300 + Y ++ L V V +L +Y ++ F GSM PKV AAI F+ +A+I LE Sbjct: 242 LYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIE-WGGERAIIAHLEKA 300 Query: 301 GALIESESGTII 312 +E ++GT + Sbjct: 301 VEALEGKTGTQV 312
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 119 bits (301), Expect = 2e-37 Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 1 MNKIESRHRLIRSLIMEKRVHTQQELQELLEANGVIVTQSTLSRDMKTLNLVKVTENDKS 60 MNK RH IR +I + TQ EL ++L+ +G VTQ+T+SRD+K L+LVKV N+ S Sbjct: 1 MNK-GQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGS 59 Query: 61 Y-YVINSIAPSRWEKRLRFYMEDALVMLRPVQHQVVMKTLPGLAQSFGAILDALELPQIV 119 Y Y + + +L+ + DA V + H +V+KT+PG AQ+ GA++D L+ +I+ Sbjct: 60 YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIM 119 Query: 120 ATVCGDDVCLIICEDNQAAIECFDKLKE 147 T+CGDD LIIC + K+ E Sbjct: 120 GTICGDDTILIICRTHDDTKVVQKKILE 147
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.5 bits (68), Expect = 0.015 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Query: 320 FSKGKQEIDGKTYNLPEDFYATIKK----DAKVKPAVENGVLKAGNDLYTLSPKISDEMK 375 SK Q G+ + + A+IKK + A + +A N L +L P + Sbjct: 125 VSKEFQTALGEAQEATDLYEASIKKTDTAKSVYD-AATKKLTQAQNKLQSLDP---ADPG 180 Query: 376 VEEVDASVTQSAKEEVTKKE 395 + +A+V Q+ KE KE Sbjct: 181 YAQAEAAVEQAGKEATEAKE 200
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.007 Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 37 KGYTAGQVSIVVSASFFSSMLAQPIMGLLNDTLGIKRVSLISFFLIILGDIFFMEADNLW 96 I+++ P++G L+D G + V L+S + A LW Sbjct: 38 SNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW 97 Query: 97 LLAI 100 +L I Sbjct: 98 VLYI 101
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.005 Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 26/186 (13%) Query: 298 LLSQFGVTKLDNFALTIMLLAIFMPNFLLTTGGILSCAYAFVISV---MDFEHLPPV--- 351 LL F + +++ + + +L G ++ A V +V M + LPP Sbjct: 376 LLGTFAILAAFGYSINTLTMF----GMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEAT 431 Query: 352 --------RKVLAESLTISLGILPILIFYFSE---FQPWSVLLTF--LFSVVFDLFMLPA 398 ++ ++ +S +P+ F S ++ +S+ + SV+ L + PA Sbjct: 432 EKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPA 491 Query: 399 LTFIFV-LSPLLKITQVNVLFELLEELIRWTASISSRPV--VFGQPSIWMMLGLLITLGL 455 L + F + + + V + G ++++ LI G+ Sbjct: 492 LCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGM 551 Query: 456 LYDFRR 461 + F R Sbjct: 552 VVLFLR 557
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 31.7 bits (71), Expect = 0.003 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 173 QAQQPVQNQQFAQPGFQGQQQPTQNQQFGQVQQPAQSQQFSQPASQEQPFAQQQ-----A 227 +A PV Q A+ G Q Q + F QQ A QQ SQ + +P A + Sbjct: 298 EAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQRTANHEPLAGEDDDTLPV 357 Query: 228 PVQNQG 233 PV QG Sbjct: 358 PVSLQG 363
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 81.8 bits (202), Expect = 6e-19 Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 13 VNIGTIGHVDHGKTTLTAAI---TTVLARRLPSSVNQPKDYASIDAAPEERERGITINTA 69 +NIG + HVD GKTTLT ++ + + SV+ K D ER+RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVD--KGTTRTDNTLLERQRGITIQTG 59 Query: 70 HVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQV 129 ++ E ID PGH D++ + + +DGAIL++++ DG QTR R++ Sbjct: 60 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 119 Query: 130 GVKHLIVFMNKIDLVDDEELLELVEMEIRDLLS 162 G+ I F+NKID + L V +I++ LS Sbjct: 120 GIP-TIFFINKIDQNGID--LSTVYQDIKEKLS 149
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 31.2 bits (70), Expect = 0.026 Identities = 8/44 (18%), Positives = 22/44 (50%) Query: 281 DFSETHVELTAEDRFHVEIWSVRNQKEELEYVAKSIRQRLHDGA 324 DF++++ + A +++ +E L+ + + +R DG+ Sbjct: 339 DFADSYKKKLALSDSARQLYQNAKYREALDIHYEDLIRRKTDGS 382
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 32.4 bits (74), Expect = 0.004 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 20/94 (21%) Query: 164 RIAVVGG-GYIGVELAEAFERLGKEVVLVDIVDTVLNGYYDKDFTQMMAKNLEDHNIRLA 222 + V G G+IG +++ G +VV +D LN YYD +L+ + L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGID----NLNDYYD--------VSLKQARLELL 49 Query: 223 LGQTVKAIQGD----GKVERLVTDKETFDVDMVV 252 + + D + L + V Sbjct: 50 AQPGFQFHKIDLADREGMTDLFASGH---FERVF 80
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 28.3 bits (63), Expect = 0.015 Identities = 11/29 (37%), Positives = 19/29 (65%) Query: 1 MKKILSLVVASIAFLTLSACSSDEKGMDS 29 MKK+ +L+V ++ + L AC+S +K S Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTS 29
>PF06580#Sensor histidine kinase Length = 349 Score = 210 bits (535), Expect = 5e-65 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 12/224 (5%) Query: 340 LAQQFNKMLDQIEQLMEAVKTEEQNVRRYELRALSAQINPHFLYNTLDTIVWMAEFNDSK 399 F K Q E ++ K + +L AL AQINPHF++N L+ I + D Sbjct: 136 FGWHFFKNYKQAE--IDQWKMASM-AQEAQLMALKAQINPHFMFNALNNIRALIL-EDPT 191 Query: 400 RVVEVTKSLAQYFRLAL-NQGHEQIALKDEIDHVRQYLFIQKQRYGDKLQYEIEEDESLA 458 + E+ SL++ R +L Q++L DE+ V YL + ++ D+LQ+E + + ++ Sbjct: 192 KAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIM 251 Query: 459 DYKLPKLVLQPLVENAIYHGIKEIDRQGMIRVTSKAEEGQLILSIYDNGRGFDLQNSVDK 518 D ++P +++Q LVEN I HGI ++ + G I + + G + L + + G K Sbjct: 252 DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA------LK 305 Query: 519 ALPRLGGVGLKNVDQRLRLQFGEDYHMEIESEPDKFTQISLYLP 562 G GL+NV +RL++ +G + +++ + K + + +P Sbjct: 306 NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 5e-23 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 18/167 (10%) Query: 3 SIMIVEDEYLVRQGIASLVNYEQFGMQVIAQAENGIEAWQKFQENPADILLTDINMPQMN 62 +I++ +D+ +R + ++ G V N W+ D+++TD+ MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRA--GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLELAKLVRDQAPKCHIVFLTGYDDFDYARTAIKLGADDYLLKPFSKDDVEEMLAKVQTK 122 +L ++ P ++ ++ + F A A + GA DYL KPF D+ E++ + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRA 118 Query: 123 LDQERKKAQ--------IQNLVDQGQHSELEEAIH--ARLADSELSL 159 L + +++ LV G+ + ++E ARL ++L+L Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLV--GRSAAMQEIYRVLARLMQTDLTL 163
>cdtoxina#Cytolethal distending toxin A signature. Length = 258 Score = 30.4 bits (68), Expect = 0.003 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 4/60 (6%) Query: 2 KKLSILTASLLCVGLLGACSNQQMNSEASKNDKSSMTSKANSNQATKMAKNFSLQGVDGK 61 K+ I A +L LL CS+ + + T + + + G Sbjct: 4 KRTPIFIAGILIPILLNGCSSGKNKAYLDPKVFPPQVEGG----PTVPSPDEPGLPLPGP 59
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.011 Identities = 14/28 (50%), Positives = 19/28 (67%) Query: 1 MKKIATLTMATLSIFALAACSSQKSNSD 28 MKK L + L+ LAACSSQKS+++ Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTE 28
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.028 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 33/137 (24%) Query: 211 LLIEQ---EER-DIYIQVSPESAKIKSHYDKLSRILVNLLNNAFKY----SDPGTKIEVV 262 L + E+R Q++P ++ ++ L+ N K+ G KI + Sbjct: 229 LQLASIQFEDRLQFENQINPAIMDVQV----PPMLVQTLVENGIKHGIAQLPQGGKILLK 284 Query: 263 AQLTGQILTISVKDEGQGIAPEDLDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLG 322 +T+ V++ G G GL RE L Sbjct: 285 GTKDNGTVTLEVENTGSLALKNT------------------KESTGTGLQNVRERLQMLY 326 Query: 323 GE---ITVESQCGLGST 336 G I + + G + Sbjct: 327 GTEAQIKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 4e-25 Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 4 TILLVDDEMDILDIQKRYLMQEGYHVLVARDGVEGLDLFRKKSVDLIITDIMMPNMDGYD 63 TIL+ DD+ I + + L + GY V + + DL++TD++MP+ + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FISEVQYIAPDQPFLFTTAKTSDQDKIYGLSLGADDFIAKPFSPRELVLRVNNIL---RR 120 + ++ PD P L +A+ + I GA D++ KPF EL+ + L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 LHRGGEIEQIELGDLV-----MNHVIHEAR 145 E + + LV M + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLA 154
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.3 bits (78), Expect = 0.003 Identities = 42/187 (22%), Positives = 65/187 (34%), Gaps = 19/187 (10%) Query: 4 NPNQKYTRWSIRRLSVGVASVVVASGFF--LLVGQPNTVHADVLTTTPTEVLQTDSSSLE 61 N N+ Y S+R+L G ASV VA LV + V T + T+ L+ + Sbjct: 5 NTNRHY---SLRKLKTGTASVAVALTVLGAGLVVN-TNEVSAVATRSQTDTLEKVQERAD 60 Query: 62 KNELPETVLKEGVDSTL-------PENQSAPKEVVDETNSTDKSSLAPKEEVAKPKEEEA 114 K E+ LK N +E+ + K+ + E+ +K +E EA Sbjct: 61 KFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEA 120 Query: 115 MSEVNEPKEEKVMSEVNKPK------EEEAKPVATPDAVSKQDREATTPQSVTTPDEVKK 168 E E M+ E E +A A ++ E S ++K Sbjct: 121 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 180 Query: 169 GVAENTK 175 AE Sbjct: 181 LEAEKAA 187
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.1 bits (65), Expect = 0.025 Identities = 9/18 (50%), Positives = 14/18 (77%) Query: 214 AEAMAGYLMEKGVPADSI 231 A+++ YL+ KG+PAD I Sbjct: 278 AQSVVDYLISKGIPADKI 295
>PF05272#Virulence-associated E family protein Length = 892 Score = 42.8 bits (100), Expect = 4e-06 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 22/94 (23%) Query: 376 MVAIVGPTGAGKTTLINLLMRFYDVTKGSISVDGHDIRQLSRQDYRKQFGMVLQDAWLYE 435 V + G G GK+TLIN L+ + + K + YE Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG-----------KDSYEQIAGIVAYE 646 Query: 436 GTIKENLRFGNLDA---TDEEIVEAAKSANVDHF 466 + A D E V+A S+ D + Sbjct: 647 --------LSEMTAFRRADAEAVKAFFSSRKDRY 672
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 31.2 bits (70), Expect = 0.008 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Query: 245 EDLQAQLTKTLKEAEKFTEKTKPGKIENNQQEQKRLQEEIDFLQDKISQGATV-VPLSGT 303 +D+ Q+ + KEA E + +E+N Q Q+R +++ Q+++ + + LS Sbjct: 315 DDIVEQIAQQAKEA---GEVARQQAVESNAQAQQRYEDQHARRQEELQLSSGIGYGLSSA 371 Query: 304 LVLEYGKTSENIYAGMDEE-YRRYQPA 329 L++ G I AG+ +RR QPA Sbjct: 372 LIVAGG-----IGAGVTTALHRRNQPA 393
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.003 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 16/152 (10%) Query: 162 TEKDLLKSFSKSGKATVKKANTFGIKLKRLERDQLSIFKDITAATSDRREYDDKSLDYYQ 221 + L++ + +A + L+ + I +++ + D + Sbjct: 176 AKIKTLEAEKAALEARQAELEK---ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 232 Query: 222 DFYDSFGQQADFMTASLNFKDYLYNLQKDQEKLGQKIQKLKADLEKTPQSEKKQNQLREL 281 M S + L+ ++ L + +L+ E N Sbjct: 233 -------ALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK------ALEGAMNFSTAD 279 Query: 282 SSQFDSFETRKAEAQELIDKYGDQDQILAASL 313 S++ + E KA + Q Q+L A+ Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.044 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 10/103 (9%) Query: 32 TTAPEVAKAELQVEKDHQPQQVSLPEAVSTDRQVK------QESSAEKSEASTVYKAPEN 85 T EVA++ + ++ Q + V + + K QE S+ S + E Sbjct: 1080 TQTNEVAQSGSETKET-QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138 Query: 86 LAPAASLVKENVP-ENKASEQAKIATSEAIQNPVKAEQTSPAI 127 + P A +EN P N Q++ T+ + P A++TS + Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQTNTTADTEQP--AKETSSNV 1179
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.009 Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 20/261 (7%) Query: 45 TVLGIYQISELITSILFNPFGGAIADRFSRRKVLMVTDLICAGLCLLISFISN-EQLMIG 103 +L +Y + + P GA++DRF RR VL+V+ A +++ L IG Sbjct: 47 ILLALYALMQFA----CAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 104 ALIFANVVQAIAFAFSRPANKSYITEIVDKEDIVAYNSHLELALQVISVSAPVLSFIVMQ 163 ++ A A +YI +I D ++ + + V+ PVL ++ Sbjct: 103 RIVAGITGATGAVA------GAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG 156 Query: 164 YASLRITLQLDALSFFQAFALVYFLPNHEPSKQKSPINLGNILRDIKEGLVYIRQQKEIY 223 + S A F FL ++ P+ + + + R + Sbjct: 157 F-SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREAL--NPLASFRWARGMTVVA 213 Query: 224 FLLLV---ASAVNFFFAAFNYLLPFTNQLYEKAGSYATILSLGAIGSIIGAILASKVKAS 280 L+ V V AA + ++ ++ + G + S+ A++ V A Sbjct: 214 ALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAAR 273 Query: 281 MGN---LLVALLLTGVGVAVM 298 +G L++ ++ G G ++ Sbjct: 274 LGERRALMLGMIADGTGYILL 294
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 29.0 bits (65), Expect = 0.008 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 48 IAKGISIYGAG----LLGLAVIVNYIFKAFSINFSSSITGFG--LFIWWILINIGVIAMI 101 + + I+ G G +L I A G F I + + ++A++ Sbjct: 177 LGELITDRGIGNGMSILMFISIAATFPSALWAIKKQGTLAGGWIEFGTVIAVGLIMVALV 236 Query: 102 VFME 105 VF+E Sbjct: 237 VFVE 240
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 1e-06 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 42/190 (22%) Query: 253 TETNRMMRMVTDLL--SLSRIDNNTSHLDVELTNFTAFITYILNRF-DKIKNQ----DET 305 T+ M+ +++L+ SL + L ELT +++ +F D+++ + Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAI 250 Query: 306 KKYEIIRDYSITPIWVEIDTDKMTQVIDNIMNNAIKYSPDGGTITVSVRTTDVQLILSIS 365 ++ + + ++N + + I P GG I + + + L + Sbjct: 251 MDVQVPP-MLVQTL------------VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297 Query: 366 DEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHHGF---IWAKSEYG 422 + G K + TG GL +E ++ +G I + G Sbjct: 298 NTGSLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG 339 Query: 423 KGSTFTIVLP 432 K +++P Sbjct: 340 KV-NAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.4 bits (232), Expect = 3e-24 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLD 62 ILV DD+ I ++ +++ GY+V + A D+++ D+++P+ + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VARTIRKT-SNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSEL 121 + I+K ++P++V+SA+++ + E GA DY+ KPF EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 IPDSHVDESSPKELFIGD 139 P D+S +G Sbjct: 125 RPSKLEDDSQDGMPLVGR 142
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.4 bits (123), Expect = 1e-08 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 13/140 (9%) Query: 222 YQERLEQHQTALDKSLEDNGATRFKRLETDAKSTIQKGQDQIAQAESELSQGKKQLEQ-- 279 +E+ Q E N + T + I + ++ +S L L + Sbjct: 191 IKEQFSTWQNQKY-QKELNLDKKRAERLT-VLARINRYENLSRVEKSRLDDFSSLLHKQA 248 Query: 280 -AQNQLDQQKSQLAAAQAASIFPPAQISQSQQQIQEAESQLNQKK--------SELAQAE 330 A++ + +Q+++ A +Q+ Q + +I A+ + +L Q Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTT 308 Query: 331 KDLSASKNKLADAKADLSRL 350 ++ +LA + Sbjct: 309 DNIGLLTLELAKNEERQQAS 328 Score = 44.0 bits (104), Expect = 2e-06 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 23/152 (15%) Query: 219 SASYQERLEQHQ-TALDKSLEDNGATRFKRLETDAKSTIQKGQDQIAQAESELSQGKKQL 277 S+ Q RLEQ + L +S+E N K + + + + S K+Q Sbjct: 141 SSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE-----VLRLTSLIKEQF 195 Query: 278 EQAQNQLDQQKSQLAAAQAASIFPPAQISQSQQQIQEAESQLN----------------- 320 QNQ Q++ L +A + A+I++ + + +S+L+ Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVL 255 Query: 321 QKKSELAQAEKDLSASKNKLADAKADLSRLKE 352 +++++ +A +L K++L ++++ KE Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAKE 287
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.003 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Query: 32 KGELVIIL-GASGAGKSTVLNILGGMD 57 K + ++L G G GKST++N L G+D Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLD 620
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 4e-09 Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 3 QKRKTSTKEDIKEALIQLLSEERFDNISISKLCKRAGINRGTFYLHYEDKYQMVESL 59 ++ T++ I + ++L S++ + S+ ++ K AG+ RG Y H++DK + + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.009 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 44 PDKTHEAVVQSVKDFSDQAVKAINQTKE-KVENGEITAETVLESVKDTTKSVVDYSQDKF 102 P +T E V ++ K S K E +N E+ E +T + V S + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 103 QEIKEKFEKEEEILE-EEISDIVVEEGEKAPS 133 +E + KE +E EE + + E+ ++ P Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPK 1124
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.1 bits (62), Expect = 0.034 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 110 ELTFKLKKSNNDEEEIKNGCGLLQYVARYIFKTGKVVLPEEYIYTKQTVGIDAQ 163 EL KL NN+ + V + K G+ EE IY + ++A+ Sbjct: 871 ELNAKLGNFNNNNNNGLKNEPIYAKVNKK--KAGQAASLEEPIYAQVAKKVNAK 922
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 30.0 bits (67), Expect = 0.014 Identities = 11/33 (33%), Positives = 14/33 (42%) Query: 193 YSLVRHVFADYTGEEVLPELEGKKLKEVLLEPT 225 YS R F DY E E E K L+ + + Sbjct: 93 YSQTRQYFYDYQIESNPREKEYKNLRNAISKNK 125
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 31.9 bits (72), Expect = 0.018 Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 35/127 (27%) Query: 1100 ASSTSPTLFYNDANQHVAKMVETRIANTNSPWLAGVQVGDIHAIPVSHGEGKFV--VTAE 1157 S + NDA A VE+RI L+ + G G VTA+ Sbjct: 220 TQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIV-----------GNGNVHAQVTAQ 268 Query: 1158 EFAELRDNGQIFSQYVDFDGKPSMDSKYNPNGSVNAIEGITSKNGQIIGKMGHSERYEDG 1217 +DF K + Y+PNG SK ++ SE+ G Sbjct: 269 ---------------LDFANKEQTEEHYSPNGDA-------SKATLRSRQLNISEQVGAG 306 Query: 1218 LFQNIPG 1224 +PG Sbjct: 307 YPGGVPG 313
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.007 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Query: 122 KNDDLDDPFINDEHVKFLKIADDQQIAYLKEETRRINE----LLKAWFAEIGLKLIDFKL 177 K D L I+ V F + +D + + I + WF + + + ++ Sbjct: 868 KEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEI 927 Query: 178 EFGFDKDGKIILAD 191 E FDK G+II D Sbjct: 928 EQIFDKSGRIITPD 941
>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein signature. Length = 104 Score = 29.1 bits (65), Expect = 0.005 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 6/101 (5%) Query: 113 MERKKDDHSLSKQNRVLNLPIQPPAYYFAQIDGVSQRFEATEANRQHLRQEVAAGLVRK- 171 + R + L+ + VL LP +F + G+S ++ ++ + G RK Sbjct: 7 ISRSGNAFLLNIRESVL-LPGSMSEMHFFLLIGISSI--HSDRVILAMKDYLVGGHSRKE 63 Query: 172 VLIKYDVNLSQATSKQQVLSELEQAMTALIPFY--EATRFE 210 V KY +N ++ L L L P+Y E++ F+ Sbjct: 64 VCEKYQMNNGYFSTTLGRLIRLNALAARLAPYYTDESSAFD 104
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.013 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 20/123 (16%) Query: 50 VDVEPIAETTVAKANQQAVKGVPEEI-NAQNEPVQSVSEATVDLGRVVTAIKKAEDEGEV 108 VD I +A+ +V EEI PV + AT T AE+ Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPAT----PSETTETVAEN---- 1043 Query: 109 VSEKIKAEILKNDKDASTILEETGAIDFLKTSQAVDEAQTQKDSEEDSSLAEVAPSQQET 168 S++ + KN++DA+ + + EA++ + + ++ EVA S ET Sbjct: 1044 -SKQESKTVEKNEQDATETT--------AQNREVAKEAKS--NVKANTQTNEVAQSGSET 1092 Query: 169 AES 171 E+ Sbjct: 1093 KET 1095
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 158 bits (401), Expect = 5e-47 Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 8/213 (3%) Query: 25 EVTANSSDFWEKLVYFFAEMIQFLSFNGSTGIGIILFTLIIRTVLLPVFQFQTTSSRKMQ 84 ++T + W F + SF G+ G II+ T I+R ++ P+ + Q TS KM+ Sbjct: 325 DLTVDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMR 384 Query: 85 EVQPHIKKLQEKYPGKDMDSRAALAEETSKLYKEMGVNPYAAFLPLFIQMPVLVALFQAL 144 +QP I+ ++E+ + +++E LYK VNP PL IQMP+ +AL+ L Sbjct: 385 MLQPKIQAMRERLGDD----KQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYML 440 Query: 145 TR-VEFLKTGHFLWL-NLGTTDPTFILPILAALFTFFSTWLSNKALPEKNGGTAVMTYLM 202 VE + LW+ +L DP +ILPIL + FF +S + + + M Sbjct: 441 MGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPM--QQKIMTFM 498 Query: 203 PVLIFFFAVYAASGVALYWTVSNAYQVGQTLLL 235 PV+ F ++ SG+ LY+ VSN + Q L+ Sbjct: 499 PVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLI 531
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 31.7 bits (72), Expect = 0.006 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 22/91 (24%) Query: 350 EAGRLTDKAEKMVELYKPQMKSVDEIVP--LTDLFFSDFPELTEAEKE------VMAGET 401 E GRL K V L++P + ++ + P + + F D P L A +E ++ Sbjct: 13 EIGRL-----KKVLLHRPG-EELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNNL 66 Query: 402 VPVVL------ETFKAKLEAMTDEEFVTENI 426 V + E + + +F+++ I Sbjct: 67 VEIEYIEDLISEVLVSSVALE--NKFISQFI 95
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.002 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDITEGTASIDGKVVNDVAPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ ++ I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645