>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 766 bits (1978), Expect = 0.0 Identities = 255/561 (45%), Positives = 348/561 (62%), Gaps = 34/561 (6%) Query: 1 MDIKRTILIAALAVVSYVMVLKWNDDYGQAALPTQNTAASTVAPG--LPDGVPAGNNGAS 58 MD +R +L+ AL VS+++ W D Q T +T A G GVPA G Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQG-- 58 Query: 59 ADVPSANAESSPAELAPVALSKDLIRVKTDVLELAIDPVGGDIVQLNLPKYPRRQDHPNI 118 LI VKTDVL+L I+ GGD+ Q LP YP+ + Sbjct: 59 ----------------------KLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ- 95 Query: 119 PFQLFDNGGERVYLAQSGLTGTDGPDARASG-RPLYAAEQKSYQLADGQEQLVVDLKFSD 177 PFQL + + +Y AQSGLTG DGPD A+G RPLY E+ +Y LA+GQ +L V + ++D Sbjct: 96 PFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTD 155 Query: 178 NGVN-YIKRFSFKRGEYDLNVSYLIDNQSGQAWNGNMFAQLKRDASGDPSSSTATGT--- 233 N + K F KRG+Y +NV+Y + N + + F QLK+ + P T + Sbjct: 156 AAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL 215 Query: 234 ATYLGAALWTASEPYKKVSMKDI-DKGSLKENVSGGWVAWLQHYFVTAWIPAKSDNNVVQ 292 T+ GAA T E Y+K I D +L + GGWVA LQ YF TAWIP N Sbjct: 216 HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFY 275 Query: 293 TRKDSQGNYIIGYTGPVISVPAGGKVETSALLYAGPKIQSKLKELSPGLELTVDYGFLWF 352 T G IGY + V G ++ L+ GP+IQ K+ ++P L+LTVDYG+LWF Sbjct: 276 TANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWF 335 Query: 353 IAQPIFWLLQHIHSLLGNWGWSIIVLTMLIKGLFFPLSAASYRSMARMRAVAPKLAALKE 412 I+QP+F LL+ IHS +GNWG+SII++T +++G+ +PL+ A Y SMA+MR + PK+ A++E Sbjct: 336 ISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRE 395 Query: 413 RFGDDRQKMSQAMMELYKKEKINPLGGCLPILVQMPVFLALYWVLLESVEMRQAPWILWI 472 R GDD+Q++SQ MM LYK EK+NPLGGC P+L+QMP+FLALY++L+ SVE+RQAP+ LWI Sbjct: 396 RLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWI 455 Query: 473 TDLSIKDPFFILPIIMGATMFIQQRLNPTP-PDPMQAKVMKMMPIIFTFFFLWFPAGLVL 531 DLS +DP++ILPI+MG TMF Q+++PT DPMQ K+M MP+IFT FFLWFP+GLVL Sbjct: 456 HDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVL 515 Query: 532 YWVVNNCLSISQQWYITRRIE 552 Y++V+N ++I QQ I R +E Sbjct: 516 YYIVSNLVTIIQQQLIYRGLE 536
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.035 Identities = 7/17 (41%), Positives = 13/17 (76%) Query: 52 LLIQGPSGVGKSTLVKE 68 ++++G G+GKSTL+ Sbjct: 599 VVLEGTGGIGKSTLINT 615
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.017 Identities = 5/23 (21%), Positives = 12/23 (52%) Query: 62 EPNSWAFLNRDADYACVLAMDHM 84 +W ++ + +D A M+H+ Sbjct: 622 SNENWLYMGKTSDEAKRNVMNHI 644
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 3e-19 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 2 RVLVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLPGIDGWD 61 +LV +D+ L Q LS +GY V I N LV+ DV +P + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLETIRKT-SRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARI-RSLQRR 117 LL I+K + +++++A+ +K + GA DYL KPF+ EL+ I R+L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 806 bits (2084), Expect = 0.0 Identities = 234/1064 (21%), Positives = 433/1064 (40%), Gaps = 59/1064 (5%) Query: 5 IIRFAIEQRIVVMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64 + F I + I + +I+ G + +LP+ P I V ++ PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFPVETAMAGLPGLQQTRSLSRS-GLSQVTVIFKDGTDIFFARQLINERLQVAKEQLPE 123 +T +E M G+ L S S S G +T+ F+ GTD A+ + +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEAVMGPVSTGLGEIFLWTVEAEDGAVKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 V+ V +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 INTIGGYAKQFLVAPDPKRLATYKLTLNDLVAALESNNANVGAGYI------ERNGEQLL 237 + G + D L YKLT D++ L+ N + AG + Sbjct: 175 VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVGNIEDIANIVI-TSVDGAPIRISSVADVSIGKELRTGAATENGREVVLGTVFM 296 I A + N E+ + + + DG+ +R+ VA V +G E A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLADINRTLPKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILVIA 356 G N+ ++A+ AKLA++ P+G+ + YD T V+ +I V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 ILFLFLGNIRAALITAMVIPLSMLFTFTGMFNNKVSANLMSLG--ALDFGIIVDGAVVIV 414 +++LFL N+RA LI + +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQHKHGRMLTKTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEG 474 EN R + K + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMED---------KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVMALLGAMVLSVTFVPAAIAMFVTGKVKEEEGVVMRTARL---------- 524 ++ + T+V A+ ++++++ PA A + E Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYEPVLQWVLGHRNIAFSAAVALVVLSGLLASRMGSEFIPSLSEGDFAMQAMRVPGTSL- 583 Y + +LG +V +L R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 584 -TQSVEMQQRLEKAVIAQVPEVERMFARSGTAEIASDPMPPNASDAYIMLKPQDQWPNPK 642 TQ V + Q + + + VE +F +G + NA A++ LKP ++ + Sbjct: 585 RTQKV-LDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 643 KPRDELIAEVQKAAAGVPGSNYELSQPIQLRFNELISGVRSDVA-VKVFGDDMDVLNNTA 701 + +I + + EL + D + G D L Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQAR 698 Query: 702 NKIAAALKAVPGS-SEVKVEQTSGLPVLTINIDREKAARYGLNIADVQNSIAIAVGGRQA 760 N++ P S V+ + +D+EKA G++++D+ +I+ A+GG Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 761 GTLYEGDRRFDMVVRLPETVRTDVAGMSSLLIPVPANAAQGANQIGFIPLSQVANLDLQL 820 + R + V+ R + L V + + +P S Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKL--YVRSANGE------MVPFSAFTTSHWVY 810 Query: 821 GPNQISRENGKRLVIVSANVRGRDLGSFVEEATASLDK-KVQIPAGYWTTWGGQFEQLQS 879 G ++ R NG + + G+ +A A ++ ++PAG W G Q + Sbjct: 811 GSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERL 867 Query: 880 AAKRLQIVVPVALLLVMTLLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSISAG 939 + + +V ++ ++V L ++ + + V +P + G ++A L + + Sbjct: 868 SGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFM 927 Query: 940 VGFIALSGVAVLNGLVMIAFIRGLRE-EGRTLRQAVDEGALTRLRPVLMTALVASLGFIP 998 VG + G++ N ++++ F + L E EG+ + +A RLRP+LMT+L LG +P Sbjct: 928 VGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 999 MALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYHWAHRK 1042 +A++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 8e-08 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 149 ASQQISDLRSEQQAAQRRVELARVTFEREKQLWQDKISAEQDYLQARQALQEAEISLANA 208 A ++ +S+ + + + A+ ++ QL++++I Q + + LA Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL--DKLRQTTDNIGLLTLELAKN 321 Query: 209 KQKVGAIGASVNSVGGNRYELRAPFDAVVVE-KHLTVGEVVSEATNAFILSDLNQV-WAT 266 +++ +RAP V + K T G VV+ A ++ + T Sbjct: 322 EERQQ------------ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVT 369 Query: 267 FAVPPTDLGKVTTGRAVKV 285 V D+G + G+ + Sbjct: 370 ALVQNKDIGFINVGQNAII 388 Score = 39.4 bits (92), Expect = 2e-05 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 88 AGVALEAAAPRDLGTVVSFPGEIRFDEDRTAHVVPRVPGVVEAVQANLGETVKKGQVLAV 147 +A + + V + G++ + P +V+ + GE+V+KG VL Sbjct: 68 LVIAFILSVLGQVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLK 126 Query: 148 IASQQISDLRSEQQAAQRRVELARVTFER---------EKQLWQDKISAEQDYLQARQAL 198 + + ++ Q + AR+ R +L + K+ E + + Sbjct: 127 LTALG---AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 199 QEAEISLANA 208 SL Sbjct: 184 VLRLTSLIKE 193
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.008 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 8/174 (4%) Query: 170 GRVRAGKSSPVEATRAQVQLAEAQLQVRRAETEKATAYQQLAQITGSSVTVFDRLESPTL 229 V S V+A ++A++ + + +T + + + + V E P + Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 230 SPGLPPRTEDLLAKLDQTAEMRQ--AVVQIDKSDASLGSEKAQRIPNLTVSVGSQYDRSV 287 + + P+ E Q R+ V I + + + P S +V Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS------SNV 1179 Query: 288 RERVNTVGLSMPLPLFDRNQGNILSASRRADQARDQRNAVELRLRTETQTALNQ 341 + V N N A+ + + N + R R ++ + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 1e-18 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 2 RILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGWQ 61 ILV +D+ + Q L+ GY V + + +L++ D+ +P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARV-RALMRRSD 120 +L +++ +++++A++ ++ E GA DYL KPF+ EL+ + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 HPASVEVIR 129 P+ +E Sbjct: 125 RPSKLEDDS 133
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 318 bits (816), Expect = e-106 Identities = 107/426 (25%), Positives = 201/426 (47%), Gaps = 9/426 (2%) Query: 41 PRVVRLTIWGVILFFVFLIVWASVAPIDEVTRGEGKAIPSSKVQKIQNLEGGIVAEIFAK 100 R RL + ++ F V + + + ++ V GK S + ++I+ +E IV EI K Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 101 EGQIVEVGQPLLRLDETRFASNVGETEADRLAMALRVERLSA-----EVEDRPLII---D 152 EG+ V G LL+L ++ +T++ L L R E+ P + + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 153 EKLRKAAPNQAASEESLYQSRRQQLQDEIGGLQQQLVQRQQELREYSSKRTQYANSLELL 212 + + + SL + + Q++ + L +++ E ++ +Y N + Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 213 RKEISMSEPLVATGAISQVEVLRLRRAEVENRGQLDSTALAIPRAEAAIREVQSKIEETR 272 + + L+ AI++ VL VE +L + + E+ I + + + Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 273 GKFRSEALTQLNEARTELNKATATSKALDDRVHRTLVTSPVRGIVKQLLVNTIGGVIQPG 332 F++E L +L + + T ++R +++ +PV V+QL V+T GGV+ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 333 SDIIEVVPLDDTLVIEAKILPKDIAFLHPGQEATVKFTAYDYTIYGGLKAKLEQIGADTI 392 ++ +VP DDTL + A + KDI F++ GQ A +K A+ YT YG L K++ I D I Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413 Query: 393 TDEDKKTTYYLIKLRTDRSHLGTDEKPLLIIPGMVATVDIMTGKKTIMSYLLKPIMKARS 452 D+ + + + + + + L T K + + GM T +I TG ++++SYLL P+ ++ + Sbjct: 414 EDQ-RLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 453 EALRER 458 E+LRER Sbjct: 473 ESLRER 478
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 90.8 bits (225), Expect = 5e-20 Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 11/214 (5%) Query: 8451 GADTIDSGNGNDIIFGDLITLNGVVSEGYQALQTYVAQKSGVEVGAVTTSNVHQYITEHY 8510 T +G+ + ++ +AL V G + + + +Q I + Sbjct: 260 ANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNE 319 Query: 8511 TEFDISGAKDGNDILSGGNGNDILFGQGGSDTLNGGKGNDILLGGTGNDTLIGGQGDDIL 8570 F G GN ++ G + G G+D L G ++IL GG GND L GG G D L Sbjct: 320 GSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTL 379 Query: 8571 IGGSGADTFVWKAGD----VGNDVIKDFNKAEGDRIDLKDLLQGEKGSTIDNYLKLTTVE 8626 GG+G DTFV+ +G D I DF D+IDL + S + + T Sbjct: 380 YGGAGRDTFVYGSGQDSTVAAYDWIADFQ-KGIDKIDLSAFRNEGQLSFVQDQ--FTGKG 436 Query: 8627 GTTTLQVSSEGKL----NAEGGIANADVTIKLEG 8656 LQ + + E G ++ D +++ G Sbjct: 437 QEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVG 470
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.4 bits (188), Expect = 3e-18 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 6/152 (3%) Query: 3 VLIVDDEPQGRERLTRLLGELEGYTVLEPSATNGDEALALIESLKPDVVLLDIGMPGLDG 62 +L+ DD+ R L + L GY V +N I + D+V+ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQAL-SRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LQVAARLCEREAPPAVVFCSG--DDEYGAEAFKDSTLSHVTKPFQAHALRDALRKAEKPN 120 + R+ + V+ S +A + ++ KPF L + +A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 RAQLAALTRPANEGGGPRSHISARTRKGIELI 152 + + + L + +G SA ++ ++ Sbjct: 123 KRRPSKLEDDSQDGMPLVGR-SAAMQEIYRVL 153
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 115 bits (290), Expect = 5e-34 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 15/220 (6%) Query: 14 VLGLCLMAPLALAD----NDDHD-LAYSLGASLGERLRQEMPGLQLDALVEGLKQSYQGQ 68 ++GL + +A D D D L+YS+GA LG+ + + + D L +G++ G Sbjct: 10 IMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGA 69 Query: 69 PLKLDKARMQAVLQQHE-------AQEGDAAAQKLQAAETRFMANERGRYGVHELTEGVL 121 L L + +M+ VL + + + E + A++ +A F++ + + G+ L G+ Sbjct: 70 QLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQ 129 Query: 122 YSELQAGTGAQPKAGGKVQVRYVGRLPDGSIFDQNQ---TPQWFNLDSVIEGWQVALPKM 178 Y + AGTGA+P V V Y G L DG++FD + P F + VI GW AL M Sbjct: 130 YKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLM 189 Query: 179 HTGAKWRLVIPSAQAYGAEGAGDLIAPYTPLVFEIELLAV 218 G+ W + +P+ AYG G I P L+F+I L++V Sbjct: 190 PAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 52.4 bits (125), Expect = 1e-09 Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 7/206 (3%) Query: 131 DQRAAKPAAKATAAAKPAAKPAARATAAAKPAAKPAAKTTTAAKPAAKPAAKATAAAKPA 190 + +A P+ + A A ++ +K +K K A Sbjct: 1002 NIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET 1061 Query: 191 AKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAA--KATAAAKPAAK 248 + AK K + A+ ++ T K A KA + + Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE 1121 Query: 249 PAAKAAAAAKPAAKPAAKAPAAKPAAKPAAT---KAPARTAAKPAA--KPAEAKPATPAA 303 + + + P A+PA + T K P A +PA+ + Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 304 TTNSVSPAAAAPSAPVSTPSQAPSAS 329 + S + + P+ + Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATT 1207 Score = 48.5 bits (115), Expect = 3e-08 Identities = 46/281 (16%), Positives = 75/281 (26%), Gaps = 15/281 (5%) Query: 48 RGKAQEKLHNGRLKLQDAAKAGKAKAQSKAQKAIGELEELLESLKERQTQTRSY-IQQLK 106 K E HN L L DA+KA + +L L+ + Y + K Sbjct: 929 ADKTGEPNHNE-LTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEK 987 Query: 107 RDAQDSLKLAQGVGKVREAAGKALDQRAAKPAAKATAAAKPAAKPAARATAAAKPAAKPA 166 R+ ++ PA + T +K Sbjct: 988 RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQE 1047 Query: 167 AKTTTAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKAT 226 +KT + A AK KA A+ ++ K A Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 227 AAAKPAAKPAAKATAAAKPAAKPAAKAAAAAKPAAKPAAKAPAAKPAAKPAATKAPARTA 286 K AK + + + ++ +P A+PA P Sbjct: 1108 KEEK------------AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 287 AKPAAKP-AEAKPATPAATTNSVSPAAAAPSAPVSTPSQAP 326 +P ++ A PA T+S S V+T + Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 330 bits (847), Expect = e-116 Identities = 148/283 (52%), Positives = 188/283 (66%), Gaps = 2/283 (0%) Query: 3 LWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTT--QHA 60 L L P + +L + L++GSF+NV+++RLPIMLER+WQ E + Sbjct: 4 LLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEP 63 Query: 61 RFDLCLPASRCPHCAHRIRAWENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLV 120 ++L +P S CPHC H I A ENIP++S+L L GRC C+ IS RYP+VE+ +ALLS+ Sbjct: 64 PYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVA 123 Query: 121 VAWRFGASVEALVALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLAD 180 VA L AL LTW L+AL+ ID D LLPD L LP +W GL+ N G V L D Sbjct: 124 VAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGD 183 Query: 181 ALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA 240 A+ GA+AGYL LW++YW F+L+TGKEGMGYGDFKL+A +GAW GWQ LP+ LLLSS+VGA Sbjct: 184 AVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243 Query: 241 LFGLCLLRFRRDAMGTAIPFGPYLAIAGWIAVLWGDEIYASYM 283 G+ L+ R IPFGPYLAIAGWIA+LWGD I Y+ Sbjct: 244 FMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 427 bits (1099), Expect = e-151 Identities = 129/405 (31%), Positives = 205/405 (50%), Gaps = 10/405 (2%) Query: 7 LYHWHGTDANGAPVSGQTPGRSPAYVRAGLIRQGITVASLRPA---------SGLAFSLP 57 YH+ DA G G S R L +G+ S+ +GL+ Sbjct: 3 QYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRK 62 Query: 58 KRREKADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGLAD 117 R +D A +RQLATL+ A +PL +A + + + + L+ ++ V G LAD Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 118 ALQRHPAWFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIYPLLLLLT 177 A++ P F+ LYC +V GE SG LD L +LA EQR+ + ++++AMIYP +L + Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 178 GLGVSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGLSRFAPLLLVMGVVMGVAVR 237 + V +ILL V+PK F M ALP T+ ++ +S + F P +L+ + +A R Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFR 242 Query: 238 QLYRQHAPARLWISRRVLGLPVFGKLLGQAALARFARSLATSYGAGVPLLDALGTVARVT 297 + RQ R+ RR+L LP+ G++ AR+AR+L+ + VPLL A+ V Sbjct: 243 VMLRQE-KRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVM 301 Query: 298 GGDLHEQAVLRLRQGMANGQGLNQAMAGEPLFPPLLVQLTAIGESSGTLDQMLEKAASHY 357 D + + G L++A+ LFPP++ + A GE SG LD MLE+AA + Sbjct: 302 SNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQ 361 Query: 358 EEQVSQALDQLTSLLEPAIVLILGLLVGGLVVAMYLPIFQLGSLI 402 + + S + L EP +V+ + +V +V+A+ PI QL +L+ Sbjct: 362 DREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 55.3 bits (133), Expect = 1e-12 Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 1 MKGQRGITLIELMIVVAIIGILATIALPMYTNHQARSKAAAGLLEISALKTAMDL-RLND 59 QRG TL+E+M+V+ IIG+LA++ +P ++ ++ + +I AL+ A+D+ +L++ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 60 GK 61 Sbjct: 64 HH 65
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 169 bits (429), Expect = 4e-55 Identities = 88/205 (42%), Positives = 124/205 (60%), Gaps = 6/205 (2%) Query: 5 NLSTDETRVSYGIGRQLGGQLRDNPPPGVSLEAILAGLTDAFNGADSRVSEADLSASF-K 63 +L+TD+ ++SY IG LG + N ++ + + G+ D +GA ++E + K Sbjct: 26 SLTTDKDKLSYSIGADLGKNFK-NQGIDINPDVLAKGMQDGMSGAQLILTEEQMKDVLSK 84 Query: 64 VIREVM---QAEAAAKAEAAAAAGKEFLVENAKREGITTLASGLQFEVLTAGEGAKPTRE 120 +++M AE KAE A G FL N + GI L SGLQ++++ AG GAKP + Sbjct: 85 FQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKS 144 Query: 121 DNVRTHYHGTLIDGTVFDSSYERGQPAEFPVGGVIAGWTEALQLMNAGSKWRLYVPSELA 180 D V Y GTLIDGTVFDS+ + G+PA F V VI GWTEALQLM AGS W ++VP++LA Sbjct: 145 DTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLA 204 Query: 181 YGAQGVGS-IPPHSVLVFDVELLDV 204 YG + VG I P+ L+F + L+ V Sbjct: 205 YGPRSVGGPIGPNETLIFKIHLISV 229
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.2 bits (68), Expect = 0.015 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 34/169 (20%) Query: 245 VDIAPLDESSPADAAEVIVNELT-----RFSPSLAERE-------RWLVLNKA----DMV 288 V I S AD AE E+T R SL +R+ V + V Sbjct: 39 VQIVSGTLQSIADMAE----EVTFVFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKV 94 Query: 289 MDDERDERVQEVIDRLEWEGPVYVISAISK----QGTDKLSHDLMRYLEDRADRLANDPA 344 + E+ + V E++ L P +S + + + M L D L P Sbjct: 95 PELEQKQNVSELLSLLS-NSPNISLSQLKAYLEGKSEEPSEQFKM--LCGLRDALKGRPE 151 Query: 345 YAEELADLDQRIED-------EARAQLQALDDARTLRRTGVKSVHDIGD 386 A ++Q + + +A ++GV + + D Sbjct: 152 LAHLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRD 200
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.3 bits (102), Expect = 9e-07 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 19/147 (12%) Query: 124 TLRTLVDLGV---------VPVINENDTVVTDEIRFGDNDTLAALVANLVEADLLVILTD 174 T++ LV+ GV VPVI E+ + E D D +A V AD+ +ILTD Sbjct: 178 TIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTD 236 Query: 175 RDGMFDADPRNNPEAQLIYEARADDPSLDAVAGGTGGALGRGGMQTKLRAARLAARSGAH 234 +G + Q + E + ++ G G M K+ AA G Sbjct: 237 VNGAALY--YGTEKEQWLREVKVEELRKYYEEGH----FKAGSMGPKVLAAIRFIEWGGE 290 Query: 235 TIIIGGRIERVLDRLKAGERLGTLLSP 261 II +E+ ++ L G+ GT + P Sbjct: 291 RAII-AHLEKAVEAL-EGKT-GTQVLP 314
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 38.9 bits (90), Expect = 9e-05 Identities = 40/254 (15%), Positives = 86/254 (33%), Gaps = 27/254 (10%) Query: 465 AIDLTHIDPPALQALADRAALRDQKERLEKELKQLKTQQAVAADRSASKAQTETLYQEVL 524 A +L H + A+QA +R L +E+ KE + +A KA +QE Sbjct: 112 ATELAHANNAAMQAEDERLRLAKAEEKARKEAE------------AAEKA-----FQE-- 152 Query: 525 DAQKALEDFRRSQTLAAEEPEKLEQLSQLEAAQDELKRSSDAFTERVQQLSAKLQL-VGR 583 A++ ++ R + + + E + AA E ++ + Q+ + Q V + Sbjct: 153 -AEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEI----AQKKLSAAQSEVVK 207 Query: 584 QLGDLESKQRTLEDALRRRQLLPADLPYGTPYMEAIDDSMDNLLPLLNDYQDSWQSLQRV 643 G++++ L ++ R L + L L+ + Sbjct: 208 MDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQN 267 Query: 644 DNQIEALYAQVRLKGVAKFDSEDD--MERRLQLLVNAYAHRTDEALTLAKARRAAVTDIA 701 EA +V + + + E R+ + ++ R A + + Sbjct: 268 RPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVH 327 Query: 702 RTLRNIRSDYDSLE 715 N++ ++L Sbjct: 328 EAEENLKKAQNNLL 341
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.5 bits (79), Expect = 5e-04 Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 4/119 (3%) Query: 411 LQQAIQRYPDDLNLLYTRAMLAEKRNDLTQMEKDLRAIITREPENAMALNALGYTLADRT 470 + + D L LY+ A + K +A+ + ++ LG Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACR-QAM 83 Query: 471 TRYTEAKALIDKAHQLTPDDPAVLDSLGWVNYRLGNLDAAETYL---RQAFANFPDHEV 526 +Y A + +P + G L AE+ L ++ A+ + + Sbjct: 84 GQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKE 142 Score = 33.0 bits (75), Expect = 0.002 Identities = 16/63 (25%), Positives = 24/63 (38%) Query: 283 PDDDELRYSLALVCLENKDWDEAEGYLQELVERDSYVDAAHLNLGRIHEERHDPAGALRE 342 D E YSLA ++ +++A Q L D Y L LG + A+ Sbjct: 33 SDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 92 Query: 343 YAL 345 Y+ Sbjct: 93 YSY 95
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 46.7 bits (111), Expect = 1e-07 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 8/96 (8%) Query: 298 RVAHVLPGQLAPDI----EGCIVLIENADPGFDWIFTH--RIAGFITAYGGENSHMSIRA 351 RV L G + E +++ E+ P D + + GF T GG SH +I + Sbjct: 137 RVLGHLIGVETGSLATIAEETVIIAEDLTPS-DTAQLNKQFVKGFATDIGGRTSHSAIMS 195 Query: 352 REFAIPAAIGVGDTRFKTLLAATSLLLDCAERRIQV 387 R IPA +G + + + +++D E + V Sbjct: 196 RSLEIPAVVGTKEVT-EKIQHGDMVIVDGIEGIVIV 230
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 6e-12 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 169 AANILVVDDSQVALQQSVHTLRNLGIECHTARSAKDAINVLLELQGTAQEINIIVSDIEM 228 A ILV DD L G + +A + A + +++V+D+ M Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-----AAGDGDLVVTDVVM 57 Query: 229 SEMDGYAFTRTLRETPDFQHLYVLLHTSLDSAMSSEKATQAGANAILTK 277 + + + +++ L VL+ ++ ++ M++ KA++ GA L K Sbjct: 58 PDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 256 bits (655), Expect = 3e-83 Identities = 92/426 (21%), Positives = 172/426 (40%), Gaps = 58/426 (13%) Query: 21 RAGRIITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEG 80 I L + +V V+T GK+ S R + I+ E IV ++ V EG Sbjct: 59 LVAYFIMGF---LVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 81 DLVERGQVLAQLDPTKTASSVGESEAKYRAARASQARLQAEVTG---------KPLTFPE 131 + V +G VL +L + ++++ AR Q R Q K P Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 132 SLRDSPDLIDAETALYQTRRR---------------------GLEQTLAGIQDSLQLVRS 170 S + + T+L + + + + ++ ++ +S Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 171 ELKITENLAKMGASSRVEVI---------------------RLNRQRSELELKANEARSD 209 L +L A ++ V+ ++ + + + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 210 YLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQ 269 + ++L + + L+ + + +R+PV V+ ++V+T GGVV Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 270 VMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTLQD 329 +M IVP D+ L + + +DI FI+ Q A +K+ A+ Y+ YG L GKV I+ D ++D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 330 EVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKPL-NRAK 388 + + + + V I E++ L + K + GM T +I+TG ++++ YL+ PL Sbjct: 416 Q-RLGLVFN-VIISIEENCL-STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 389 EALRER 394 E+LRER Sbjct: 473 ESLRER 478
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 49.6 bits (118), Expect = 5e-07 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Query: 6158 DVIAGTDGNDHLDGSQG--------GHITLQGGAGDDTLVVVDQNFAS--VDGGSGTDTL 6207 D ++G +G+D L G G G+ L GG GDD V + A + GG G D L Sbjct: 765 DTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKL 824 Query: 6208 LWGGGDASIDLG 6219 G +D G Sbjct: 825 YGSEGADLLDGG 836 Score = 40.7 bits (95), Expect = 2e-04 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Query: 6158 DVIAGTDGNDHLDGSQGGHITLQGGAGDDTLVVVDQNFASVDGGSGTDTLLWGGGDASID 6217 D+I G DGND L G +G L GG GDD L GG G D L+ G+ ++ Sbjct: 747 DLIEGNDGNDRLYGDKGNDT-LSGGNGDDQL----------YGGDGNDKLIGVAGNNYLN 795 Query: 6218 LG 6219 G Sbjct: 796 GG 797 Score = 34.2 bits (78), Expect = 0.023 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 6128 DSAAGLTATTSLLADTGDESAALASLAAATDVIAGTDGNDHLDGSQGGHITLQGGAGDDT 6187 D G+ L GD+ + + A +V+ G GND L GS+G + L GG GDD Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADL-LDGGEGDDL 841 Query: 6188 LVVVDQNFASVDG-GSGTDTLLWGGGD 6213 L N G G + GG Sbjct: 842 LKGGYGNDIYRYLSGYGHHIIDDDGGK 868
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 379 bits (974), Expect = e-129 Identities = 140/369 (37%), Positives = 195/369 (52%), Gaps = 15/369 (4%) Query: 164 ERIEHLALRAEDEHHRAELYRQASGQD-RELIGQSPAHKRLVEEIRLVGSSDLTVLITGE 222 + + RA E R + QD L+G+S A + + + + +DLT++ITGE Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 223 TGVGKELVAQALHRASSRADKPLVSLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFE 282 +G GKELVA+ALH R + P V++N AA+P L+ESELFGH +GAFTGA G+FE Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 283 LANGGTLFLDEVGELPLTVQAKLLRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVR 342 A GGTLFLDE+G++P+ Q +LLRVLQ G+ +G R DVR++AATN+DL + Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSIN 288 Query: 343 TGNFRADFYHRLSVYPLHVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSHEAQAALI 402 G FR D Y+RL+V PL +PPLR+R D+ L +F++Q + GL+ R EA + Sbjct: 289 QGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMK 347 Query: 403 AYDWPGNVRELEHLIGRSALKALGQHPDRPRILTL-------------EAIDLDLRVSAT 449 A+ WPGNVRELE+L+ R R I A L +S Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 450 TPGTLPSPAAPLQVVTPPEGGLREAVDSYQRQVIEACLQRHQDNWAAAARELGLDRANLS 509 + A PP G + + +I A L + N AA LGL+R L Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 510 RLARRLGLR 518 + R LG+ Sbjct: 468 KKIRELGVS 476
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 70.8 bits (173), Expect = 4e-19 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 1 MFEVGFSELLLIGVVALLVLGPERLPVAARTLGRGLGQARRAMHALRTQVEREIEMPNLD 60 MF++GFSELLL+ ++ L+VLGP+RLPVA +T+ + R ++ ++ +E+++ Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 -------QAPLQRLEQEIRQGISLNAEPANDAATAVLPKENAS 96 +A L L E++ A ++ + Sbjct: 61 DSLKKVEKASLTNLTPELKA-SMDELRQAAESMKRSYVANDPE 102
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 33.8 bits (77), Expect = 2e-05 Identities = 12/45 (26%), Positives = 20/45 (44%) Query: 1 MGGIGIWQLVIVLLIVFLLFGTKRLKGLGSDVGEAIQGFRKSMGG 45 M IG +L++V +I ++ G +RL V I+ R Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATT 45
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 473 bits (1219), Expect = e-162 Identities = 195/629 (31%), Positives = 311/629 (49%), Gaps = 97/629 (15%) Query: 10 ALSLALSMAYAQEPVFDDNGTPMYEVNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTV 69 S +L++ +F + +F T++ EFI++VS+ T I+DP V+G +TV Sbjct: 7 IRSFSLTLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITV 66 Query: 70 RTVDLHDADAIYDIFLAQLRAQGYATVDLPNGSVKIVPDQAARLEPVPV----------- 118 R+ D+ + + Y FL+ L G+A +++ NG +K+V + A+ VPV Sbjct: 67 RSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDE 126 Query: 119 ---------------------EAGGQQGEGS----DSVATRVFSVRNAASEQVLGILKPL 153 + G GS + + + R A +++L I++ + Sbjct: 127 VVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERV 186 Query: 154 IDP--RVGVITPYPAAHQL-------------------------VVTDWRSNL------- 179 + R V P A VV D R+N Sbjct: 187 DNAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEP 246 Query: 180 ---ERIASLLRQLDRPQEVPGSGSTQVIYLRHANAGEVVKVLRGLSQEGAVPVEGAGEAE 236 +RI ++++QLDR Q G+T+VIYL++A A ++V+VL G+S + A Sbjct: 247 NSRQRIIAMIKQLDRQQAT--QGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVA 304 Query: 237 GKDRPVVPAAGGSGIRLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIRRAQVVVEAIIAE 296 D+ ++ A G TNA+++ + ++ QLDIRR QV+VEAIIAE Sbjct: 305 ALDKNIIIKAHGQ---------TNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAE 355 Query: 297 VSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNIASIAGAAASGDNEALGDLLSTTTGAT 356 V D+ LG+QW AG+ F ++G+ I++ A + + G + S+ A Sbjct: 356 VQDADGLNLGIQWANK----NAGMTQFTNSGLPISTAIAGANQYNKD--GTVSSSLASAL 409 Query: 357 AGIGHFGGGF---NFAMLVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVT 413 + GF N+AML+ AL + ++L+TP+++TLDN EA+ VGQEVP +TGS T Sbjct: 410 SSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT 469 Query: 414 QNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADTSSASD----VITNKR 469 + N + T+ERK VG+KL++KPQIN +SV L+I QEVSS+AD +S++ N R Sbjct: 470 TSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTR 529 Query: 470 EIKTKVMVEDNGLVILGGLISDELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFI 529 + V+V V++GGL+ +S + +VPLLGDIP +G LFRS + + +K+NLM+FI Sbjct: 530 TVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFI 589 Query: 530 RPRILRDGPSLAGLSEDKYRTLQQTTPLQ 558 RP ++RD S +Y Q Sbjct: 590 RPTVIRDRDEYRQASSGQYTAFNDAQSKQ 618
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 452 bits (1165), Expect = e-161 Identities = 176/404 (43%), Positives = 248/404 (61%), Gaps = 8/404 (1%) Query: 1 MPTYRYQAVDLAGKSHKASLQADSERHARQLLREQGLF--------ARQLQRHDAGSRQP 52 M Y YQA+D GK + + +ADS R ARQLLRE+GL Q + G Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGL 112 R+ RLS + L LTRQLATL A +PL +AL + +Q +P L ++ A+R + EG L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 113 ARSLARQGAPFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYPAVLM 172 A ++ F LYCA+V AGE SGHL VL RLAD+ EQ Q+ + + + A+IYP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 173 GVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVHAGPWLLGVALLLGGL 232 V++AVV L++ VVPK+ EQF H Q+LPL T +L+G+S + GPW+L L Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 233 AGWLLRKPHWCLRRDQLLLRLPRIGNLLQVLESARLARSLAILCGSGVALLEALQVATET 292 +LR+ + + LL LP IG + + L +AR AR+L+IL S V LL+A++++ + Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 293 IGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPPLLVNMVGSGEASGTLADMLERVADD 352 + N R + V+ G SLH+AL+ + FPP++ +M+ SGE SG L MLER AD+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 353 QERGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLNQ 396 Q+R F+ Q+ A+ LFEPL+++ M AVVLFIVLA+L PI+QLN Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 217 bits (555), Expect = 3e-76 Identities = 71/141 (50%), Positives = 96/141 (68%), Gaps = 3/141 (2%) Query: 11 RRNRQRGFTLMEIMVVIFIIGLLIAVVAPSVLGNQDKAMKQKVMADLATLEQALDMYRLD 70 ++QRGFTL+EIMVVI IIG+L ++V P+++GN++KA KQK ++D+ LE ALDMY+LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 71 NLRFPSNEQGLAALVKKPAQEPLPRAWRSDGYVRRLPEDPWGTPYQYRMPGEHGRVDVYS 130 N +P+ QGL +LV+ P PL + +GY++RLP DPWG Y PGEHG D+ S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 131 LGADGLPGGEGQDADLGNWAL 151 G DG G E D+ NW L Sbjct: 123 AGPDGEMGTED---DITNWGL 140
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 37.2 bits (86), Expect = 6e-06 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 4 QRGFSLIELLVVLAIAGLMTGLAVAGLGNG-QASVEQALQRLAVKVRGQAALARHAGQLR 62 QRGF+L+E++++L + G+ G+ + S Q L R ++R GQ Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFF 62 Query: 63 GLRWNGQRPEFVRREGNAWVVEAVPLGDW 91 G+ + R +F+ E A W Sbjct: 63 GVSVHPDRWQFLVLEARDGADPAPADDGW 91
>PilS_PF08805#PilS N terminal Length = 185 Score = 31.8 bits (72), Expect = 5e-04 Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 15 KQAQRGFTLLEVTVALAIAAVLAVITSQVLHQRLAVQDN 53 K+ +G TL+EV + + + VLA ++ + + Sbjct: 22 KEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQS 60
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.7 bits (64), Expect = 0.010 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 4/28 (14%) Query: 4 RQTGLTLIELMVALALTAVLGIMLAALV 31 +Q G TL+E+MV + ++G+ LA+LV Sbjct: 6 KQRGFTLLEIMVVI---VIIGV-LASLV 29
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 31.4 bits (71), Expect = 8e-04 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 10/104 (9%) Query: 44 EYKESIDEMKHADKLIKRILFLEGIPN--VQDLGKLL------IGEHTKEMLECDLKIEQ 95 E + E D + +R+L + G P V++ + EM++ + + Sbjct: 52 ELYDHAAE--TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYK 109 Query: 96 QGLVDLKAAIAHCETAGDFGSRDVLEDILESEEEHIDWLETQLG 139 Q + K I E D + D+ ++E E+ + L + LG Sbjct: 110 QISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 107 bits (268), Expect = 3e-29 Identities = 71/252 (28%), Positives = 129/252 (51%), Gaps = 6/252 (2%) Query: 42 FECRLSQPIEGFGSGTFVRRAGEQPV--FQLRSDSNALGAGTASLLAAAAPWQPGRGDIN 99 EC+L PI FG F RA ++ F+L+ SL++ PW+PG Sbjct: 44 LECQLVHPIPSFGDAVFSSRASKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEHADR 103 Query: 100 LGNVRMARSGVLFSSSQGQASRLINGLLDGR--STVVRNYTGEAGRPMEVRVLPVSFAKA 157 + N++ + + Q A +++ L GR + +++ R +EV + V F Sbjct: 104 ITNLKFFKQFDGYVGGQ-TAWGILSELEKGRYPTFSYQDWQSRDQR-IEVALSSVLFQSK 161 Query: 158 YNDYQVCAGKLLPMNYDQVRQTQVGFPGGGIELDAAAKARLDVILDYMKADPTVNHVELN 217 YN + C LL +++ + T + + G +L A+K RL I DY++ + ++ V + Sbjct: 162 YNAFSDCIANLLKYSFEDIAFTILHYERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVA 221 Query: 218 GHSDNSGNRLTNRDLSRRRALAVADYFKANGVPEEQITVRFHGERYPLAKNNSASNRARN 277 ++D++ + ++ LS RRA ++ YF++ G+PE++I V+ +G+R P+A N + + +N Sbjct: 222 TYTDSTDGKSESQSLSERRAESLRTYFESLGLPEDRIQVQGYGKRRPIADNGTPIGKDKN 281 Query: 278 RRVNIELDRVAV 289 RRV I L R V Sbjct: 282 RRVVISLGRTQV 293
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 4e-20 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 7/158 (4%) Query: 3 KVLIVDDHPVIRLAVRMLMERHGYDVVAETDNGVAALQLTRQHLPDIVVLDIGIPKLDGL 62 +L+ DD IR + + R GYDV T N + D+VV D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EVIARMATFSPGSKVLVLTSQAPGNFSMRCMQAGAAGYVCKQQELTELLSAIKAVLSGYS 122 +++ R+ P VLV+++Q +++ + GA Y+ K +LTEL+ I L+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA--- 120 Query: 123 YFPNQALHASRGRGAGSETDMVNRLSAREMTVLQQLAR 160 + + + +V R SA + + LAR Sbjct: 121 --EPKRRPSKLEDDSQDGMPLVGR-SAAMQEIYRVLAR 155
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.3 bits (76), Expect = 0.002 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 53 LCLMLATYPVSRLMSRIGRKKAFMLGAIPLALSGVSGFLAVEHQHFPTLVLSHSALGV-Y 111 L + T +L ++G K+ + G I V GF V H F L+++ G Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGF--VGHSFFSLLIMARFIQGAGA 117 Query: 112 IAFANFNRFAATDNLSQALKPKALSLVVAGGVIAAVVGPTL 152 AF + + + KA L+ + + VGP + Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158
>SECA#SecA protein signature. Length = 901 Score = 57.6 bits (139), Expect = 6e-14 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 23 GHVHGPHCNHGHQEPIRNALKDVGRNDPCPCGSEKKYKKCHG 64 H + + VGRNDPCPCGS KKYK+CHG Sbjct: 858 SHQDDDS-AAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHG 898
>PERTACTIN#Pertactin signature. Length = 922 Score = 32.4 bits (73), Expect = 7e-04 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Query: 62 HLRVDNPNDSRLFIRNVSYAIRLNDLLLVQDEAS----VW-RSVGGHA 104 L VD S LF NV + L+D L+V +AS +W R+ G Sbjct: 468 VLMVDTLAGSGLFRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSEP 515
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.006 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 90 AQLMEQVDFKVATMPQADKFQLHLFAALAQQEREFIATRTKEALASLQRRAD---AGDAV 146 A+ + + + + + + L + + EA++SLQ R + A A Sbjct: 154 AEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKAS 213 Query: 147 AQQKVANRA--EAQAKGRAVADITAANNIRMSKINTY 181 + AN+A +A A+ + A+ A + NTY Sbjct: 214 IEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTY 250
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 32.5 bits (74), Expect = 0.003 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 169 SPSAVVEKVIKYLGKDLVQEVVKACKIKPTQRSQLTEWIIDNYNPSDESHRAALPDPEKV 228 +P+++ + K L + + QL +W++D+ + R+ LP + Sbjct: 178 TPASMAATLRKLLTSQRLS---------ARSQRQLLQWMVDD-RVAGPLIRSVLPAGWFI 227 Query: 229 HDLKT 233 D KT Sbjct: 228 AD-KT 231
>SECA#SecA protein signature. Length = 901 Score = 47.9 bits (114), Expect = 4e-09 Identities = 14/20 (70%), Positives = 16/20 (80%) Query: 134 KAGRNDPCPCASGHKFKKCC 153 K GRNDPCPC SG K+K+C Sbjct: 878 KVGRNDPCPCGSGKKYKQCH 897 Score = 28.7 bits (64), Expect = 0.011 Identities = 8/14 (57%), Positives = 8/14 (57%) Query: 7 CPCGSGNLLDACCG 20 CPCGSG C G Sbjct: 885 CPCGSGKKYKQCHG 898
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 68.7 bits (168), Expect = 2e-15 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 23/179 (12%) Query: 8 RLLLTGAAGGLGKVLRERL-KGYAEVLRLSDISP----------MAPAAGPHEEVITCDL 56 + L+TGAAG +G + +RL + +V+ + +++ + A P + DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 57 ADKAAVHTLVE--GVDAIIHFG---GV--STE--HAFEEILGPNICGVFHVYEAARKHGV 107 AD+ + L + + V S E HA+ + N+ G ++ E R + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADS---NLTGFLNILEGCRHNKI 118 Query: 108 KRIIFASSNHTIGFYRQDERIDAHAPRRPDSYYGLSKCYGEDVASFYFDRYGIETVSIR 166 + +++ASS+ G R+ + P S Y +K E +A Y YG+ +R Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 156 bits (395), Expect = 9e-52 Identities = 50/147 (34%), Positives = 79/147 (53%) Query: 8 SEEDRKSIVDGLSRLLSDTYVLYLKTHNFHWNVTGPSFRTLHLMFEEQYNELALAVDSIA 67 ++ ++ + + L+ LS+ ++LY K H FHW V GP F TLH FEE Y+ A VD+IA Sbjct: 6 AKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIA 65 Query: 68 ERIRALGFPAPGSYAFYARHSSIKEEEGVPPADEMIRQLVQGQEAVVRTARSIFPVVDKV 127 ER+ A+G + Y H+SI + A EM++ LV + + ++ + + ++ Sbjct: 66 ERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEEN 125 Query: 128 SDEPTADLLTQRMQVHEKTAWMLRVLL 154 D TADL ++ EK WML L Sbjct: 126 QDNATADLFVGLIEEVEKQVWMLSSYL 152
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 63.2 bits (153), Expect = 7e-13 Identities = 34/230 (14%), Positives = 74/230 (32%), Gaps = 4/230 (1%) Query: 37 TPELPPSKPIVQATLYQLKSKSQATTQTNQKIAGEAKKTASRQTEVEQLEQKKVEQEAVK 96 T P+ ++ A + A T S TE K+ + K Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVD-EAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 97 AAEQKKADAAQKAEEAREAAEAKKAEDAAKAAEAAKAAEAKKAAEAKKADEAKKAAEKQQ 156 + AQ E A+EA + + E A++ K + + E ++++ Sbjct: 1054 NEQDATETTAQNREVAKEAK--SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 157 ADIAKKKAEDEAKKKAEEEAKKAAAEEAKKKAAEDAKKKAAEEAKKKAAEDAKKKAAAED 216 A + +K ++ K ++ K+ +E + AE A++ K+ A E Sbjct: 1112 AKVETEKTQEVPKVTSQVSPKQEQSETVQP-QAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 217 AKKKAAEEAKKKAAADAQKKKAQEAARKAAEDKKAQALAELLSDTTERQQ 266 K+ + ++ A + S+++ + + Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Score = 61.2 bits (148), Expect = 3e-12 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 9/201 (4%) Query: 69 AGEAKKTASRQTEVEQLEQKKVEQEAVKAAEQKKADAAQKAEEAREAAEAKKAEDAAKAA 128 + Q +V + E V A A +E AE K E Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 129 EAAKAAEAKK-AAEAKKADEAKKAAEKQQADIAKKKAEDEAKKKAEEEAKKAAAEEAKKK 187 A E E K ++ A Q ++A+ +E K+ E K+ A E ++K Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE--TKETQTTETKETATVEKEEK 1111 Query: 188 AAEDAKKKAAEEAKKKAAEDAKKKAAAEDAKKKAAEEAKKKAAADAQKKKAQE----AAR 243 A + +K +E K ++ + K+ +E + +A + + ++ ++Q Sbjct: 1112 AKVETEKT--QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 244 KAAEDKKAQALAELLSDTTER 264 + A++ + + TT Sbjct: 1170 QPAKETSSNVEQPVTESTTVN 1190
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 67.3 bits (164), Expect = 2e-14 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 38/194 (19%) Query: 119 ESSLGSAVIMSPEGYLLTNNHVTSGADQIVVALK------------DGRETLARVIGSDP 166 + + S V++ LLTN HV ALK +G T ++ Sbjct: 100 GTFIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 167 ETDLAVLKIDL--------KNLPAITIGRSDTIHIGDVSLAIGNPFGVGQTVTMGIISAT 218 E DLA++K + + T+ + + G P TM + Sbjct: 159 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESK 215 Query: 219 GRNQLGLNNYEDFIQTDAAINPGNSGGALVDANGNLIGINTAIFSKSGGSQGIGFAIP-- 276 G+ L +Q D + GNSG + + +IGI+ G+ Sbjct: 216 GK-ITYLKGE--AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGA 263 Query: 277 VKLALEVMKSIVEH 290 V + V + ++ Sbjct: 264 VFINENVRNFLKQN 277
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 73.0 bits (179), Expect = 1e-15 Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 33 VDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKVGTTGEEVDLALLV-DGLQAEREQGIT 91 VD GK+TL LL++S I ++G VD D ER++GIT Sbjct: 12 VDAGKTTLTESLLYNSGAI------------TELG----SVDKGTTRTDNTLLERQRGIT 55 Query: 92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYI 151 I F K I DTPGH + + S D AI+L+ A+ GVQ QTR + Sbjct: 56 IQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 152 ASLLGIKHIVVAVNKMDLKGFD-EGVFESIK 181 +GI I +NK+D G D V++ IK Sbjct: 116 LRKMGIPTIFF-INKIDQNGIDLSTVYQDIK 145
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 253 bits (648), Expect = 7e-77 Identities = 152/441 (34%), Positives = 221/441 (50%), Gaps = 43/441 (9%) Query: 351 ATQNLMQRAAEVENLQAQLAAQEEA-ARQQAEAERLA-----------AEAERQRQEALR 398 A N+ + +LQ ++ A A +A A A AE + ++Q A+R Sbjct: 186 AAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIR 245 Query: 399 RSVSYINEARLAVSTPA----VIPIGATTFAVAEAAYSALAESIAAALTRLVATTVPSVA 454 + +Y A +V A +I + ++A+A A+A L R++A+ +A Sbjct: 246 AANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIA-----VLGRVLASAPSVMA 300 Query: 455 VGTLAMA--------WPSTLGNSERQYLISTPLDSLSPAGGPDLAALAASSTSIDLPYLL 506 VG ++ W +Y + L +L A+A +S ++DLP L Sbjct: 301 VGFASLTYSSRTAEQWQD-QTPDSVRYALGMDAAKLGLPPSVNLNAVAKASGTVDLPMRL 359 Query: 507 AGVENENELDLYVVPSG-----KPVAVRAATFDSERQVY-----SLALDNPQRILTWTPA 556 N L VV + K V VR A +++ +Y S + P ILTWTPA Sbjct: 360 TNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPA 419 Query: 557 SAPGGDEGNSTSLPLVPPGTVVYTGSSLNPVVTEQEGYPALDLLDQERLIITFPMDSGLP 616 S PG +ST+ P+VP VY G++L PV E YP + L ++ LII FP DSG+ Sbjct: 420 SPPGNQNPSSTT-PVVPKPVPVYEGATLTPVKATPETYPGVITLPED-LIIGFPADSGIK 477 Query: 617 PILVVFKSPRYEAGTSTGHGAQVSDTWRKEAASLEGAPIPAQIAELLKSREFRNFDAFRR 676 PI V+F+ PR G +TG G VS W A+ EGAPIP+QIA+ L+ + F+N+ FR Sbjct: 478 PIYVMFRDPRDVPGAATGKGQPVSGNWLGAASQGEGAPIPSQIADKLRGKTFKNWRDFRE 537 Query: 677 QFWKAVANDPELSKQFDEMSLSRMRKNGYSPIVDFPDSHLSQKTFILHHVIPISEGGGVY 736 QFW AVANDPELSKQF+ SL+ MR G +P V + + +HH + +++GGGVY Sbjct: 538 QFWIAVANDPELSKQFNPGSLAVMRD-GGAPYVRESEQAGGRIKIEIHHKVRVADGGGVY 596 Query: 737 DMDNIRIVTPLSHNSIHYGTK 757 +M N+ VTP H IH G K Sbjct: 597 NMGNLVAVTPKRHIEIHKGGK 617
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.2 bits (68), Expect = 0.005 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 59 AGYVTLRFNYRGVGQSAGSHDMGAGEVADAEAAAAWLRARHPGLPLVLMGFSFGG---FV 115 AGY+ L Y G MG G+ A AWL + LP+VL+ S G + Sbjct: 190 AGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQ--ALPIVLLLSSLVGAFMGI 247 Query: 116 ATSLAGRL 123 L Sbjct: 248 GLILLRNH 255
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 29.1 bits (65), Expect = 0.015 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Query: 104 KHNRQHIVAALEESLKRLQTDRIDLY----QLHWPERSTNFFGKLGYQHLPQDHFTPLEE 159 N + +E SL ++ LY + HW + +FF ++ + E Sbjct: 3 TENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFF---TLHEKFEELYDHAAE 59 Query: 160 TLEVLDEQVRAGKIRHIGLSNETPWGTMK-FLQLAE 194 T++ + E++ A IG P T+K + + A Sbjct: 60 TVDTIAERLLA-----IGGQ---PVATVKEYTEHAS 87
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 27.0 bits (59), Expect = 0.037 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 50 VISAASKQ-DSIAARIAASICDEHGNPVFSSPLDITHGPLDPVELEKDP 97 + A++++ D IA + + D+ G +FS I HG + L+K+ Sbjct: 192 ICCASTRESDHIANMWLSKVVDDEGKEIFSG---IRHGVISAYGLKKNS 237
>PF02370#M protein repeat Length = 168 Score = 29.3 bits (65), Expect = 0.036 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 408 KKLLGQFDTAEEGYKRQIALINTETDKRKEATEVAKLQFELESGNLAGLSAKQQERLKGL 467 + L+G+ + + I +RKE E + + + E + QE+ K Sbjct: 51 RALMGENQDLRKREGQYQDKIEELEKERKEKQERPERREKFERQHQD---KHYQEQQKKH 107 Query: 468 AAELDQLKKLKQAKEDDKEVAGFDASVK 495 E QL+ KQ +K+++ DAS + Sbjct: 108 QQEQQQLEAEKQKLAKEKQIS--DASRQ 133
>PF04619#Dr-family adhesin Length = 160 Score = 30.3 bits (68), Expect = 0.002 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 94 REMIVMRAPTVDASSLQSGDLVFFATSGGSQVSHAGIYVGDGRFVHAPSTGGTVRLDYLS 153 R+ + + D S+ + + VF+ GS GIYV DG+ + P T+ L Sbjct: 99 RDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYV-DGQQTNTPPGNYTLTLT--- 154 Query: 154 NSYWAK 159 YWAK Sbjct: 155 GGYWAK 160
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 116 bits (292), Expect = 7e-38 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 2 TKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVG 61 K +LI + V L+ KD A+ + +S LA G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAK-VAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGQSVSLEGKFVPHFKPGKELRDRV 90 RNP+TG+ + ++ VP FK GK L+D V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 30.3 bits (68), Expect = 0.017 Identities = 15/43 (34%), Positives = 21/43 (48%) Query: 403 LDGQMYEIRAKVVTVGGFSGHADQAGLVGFVNAMSRVPGRVVL 445 DGQ+Y + + V GFS D A L V +RVP ++ Sbjct: 137 ADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAII 179
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.037 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%) Query: 284 FQQVGESVESCHSALSQVNLELGQHQAALVDLSQEVERHRAELESLKQVVNGLNHHLSDT 343 FQ V E ++L + Q+Q +++ RAE ++ +N + Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQ--KELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 344 QQRLA----LADERMAATQAWIDKQQA 366 + RL L ++ A A ++++ Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENK 260
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 43.2 bits (102), Expect = 7e-07 Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 32/200 (16%) Query: 1 MKILLLGKNGQVGWELQRALAPLG-EVIALD-----------RQGAEGLC--------GD 40 MK L+ G G +G+ + + L G +V+ +D + E L D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 41 LSNLDGLAATIRQLAPDVIVNAAAYTAVDKA-ESDQALAAMINAAAPAVLARETAALGAW 99 L++ +G+ + + + AV + E+ A A +L Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 100 LIHYSTDYVFDGSGSQRWEETAPTG-PLSVYGRTKLEGE-HAILAS---GAKAVVLRTSW 154 L++ S+ V+ + + P+S+Y TK E A S G A LR Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 155 VYAARG------HNFAKTML 168 VY G F K ML Sbjct: 181 VYGPWGRPDMALFKFTKAML 200
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 178 bits (452), Expect = 4e-55 Identities = 91/358 (25%), Positives = 146/358 (40%), Gaps = 43/358 (12%) Query: 2 ILVTGGAGFIGSNFVLQWCAHNEEPVLNLDALT--YAGNL--ANLQPLEGNPQHRFVQGN 57 LVTG AGFIG + + + V+ +D L Y +L A L+ L P +F + + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKID 60 Query: 58 ICDAALLTKLFAEHRPRAVVHFAAESHVDRSITGPEAFVETNVMGTFRLLEAARAHWNSL 117 + D +T LFA V V S+ P A+ ++N+ G +LE R N + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH--NKI 118 Query: 118 EGAEKEAFRFLHVSTDEVYGTLGPNDPAFTETTPYAPNSPYSASKAASDHLVRSYFHTYG 177 + L+ S+ VYG L P T+ + P S Y+A+K A++ + +Y H YG Sbjct: 119 Q-------HLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 MPVLTTNCSNNYGPLHFPEKLIPLMIVNALAGKALPVYGDGQQIRDWLYVEDHCSGIRRV 237 +P YGP P+ + L GK++ VY G+ RD+ Y++D I R+ Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 LEAGAFGETYNIGGWNEKANIDIVRTLCSLLDEMAPAASRQVINQKTGEPVE--QYAELI 295 + +T A A A +V N PVE Y + + Sbjct: 231 QDVIPHADTQWTVETGTPA---------------ASIAPYRVYNIGNSSPVELMDYIQAL 275 Query: 296 A----------YVTDRPGHDRRYAIDARKIERELGWKPAETFETGIRKTVAWYLANQK 343 + +PG + D + + +G+ P T + G++ V WY K Sbjct: 276 EDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 39.5 bits (92), Expect = 2e-05 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 12/105 (11%) Query: 211 KLGMHYLSRHKVQEGRILLEAALSIAPS-AEVFNRLGGSYMEDGHFSIALQYFNAAAQL- 268 L + K ++ + +A + + F LG G + +A+ ++ A + Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 269 ---PNPPVWTAFNQAHCLAKLHQLDEAIRVLSAG---IATNPNHR 307 P P F+ A CL + +L EA L IA + Sbjct: 101 IKEPRFP----FHAAECLLQKGELAEAESGLFLAQELIADKTEFK 141
>adhesinb#Adhesin B signature. Length = 310 Score = 32.5 bits (74), Expect = 0.003 Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 280 YLAGKYGIHPTYIQEMLGDSRFGEEDILAVIEYLR 314 Y + Y + YI E+ + + I ++E LR Sbjct: 211 YFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEKLR 245
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 48.0 bits (114), Expect = 7e-08 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 11/113 (9%) Query: 136 NGDDVITVKGDQNTLIDAGDGNDTIVTGNGDNVVIAGAGNNNVTTGTGDDTI-------- 187 +G+D + N + G+G+D + G+G++ +I AGNN + G GDD Sbjct: 753 DGNDRLY-GDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLA 811 Query: 188 --ILSGSNHADIVNAGAGYDVVQLDGSRDDYAFAVGNNFNVNLTGNQTASITD 238 +L G D + G D++ D GN+ L+G I D Sbjct: 812 KNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDD 864 Score = 47.7 bits (113), Expect = 8e-08 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 145 GDQNTLIDAGDGNDTIVTGNGDNVVIAGAGNNNVTTGTGDDTIILSGSNHADIVNAGAGY 204 D + LI+ DGND + G++ + G G++ + G G+D L G + +N G G Sbjct: 743 ADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK--LIGVAGNNYLNGGDGD 800 Query: 205 DVVQLDGSRDDYAFAVGNNFNVNLTGNQTASITD 238 D Q+ G+ G N L G++ A + D Sbjct: 801 DEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLD 834
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 323 bits (829), Expect = e-108 Identities = 96/422 (22%), Positives = 176/422 (41%), Gaps = 7/422 (1%) Query: 24 RRIGLTVVFVTFGIFGTWAAFAPLSNAVHGTGVVTVQNYRKTVQHLEGGIVKELHARDGD 83 R + ++ I + + G +T K ++ +E IVKE+ ++G+ Sbjct: 58 RLVAYFIMGF-LVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGE 116 Query: 84 LVKKGDPLIVLDESQLSAEYESTRNQLIVARYKEARLRA-----ERDGLDSIPSVIMEGT 138 V+KGD L+ L A+ T++ L+ AR ++ R + E + L + Sbjct: 117 SVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYF 176 Query: 139 DSDRAQEALAGEQQVFKARHDSLLGEISVNRERIQQMQQQIAGLNDMIRTKAGLNKSYSG 198 + +E L + K + + + + + + + + I L++ Sbjct: 177 QNVSEEEVLR-LTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 199 EIKQLKELLAEGFVDNQRLLEQERKLDMLKTEVADHQSSITKTKLQIGETELQIVQLKKK 258 + LL + + +LEQE K E+ ++S + + + +I + + + + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 259 FDADVAKELSDVQAQVFDLQEKEAALRDRLSRVVIRAPESGMVLDMKVHTIGGVVSAATP 318 F ++ +L + L + A +R VIRAP S V +KVHT GGVV+ A Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 319 LLDIVPAQSDLVVEAKVAPRDIDRLELGKTADVRFSAFNQATTPVIEGKLTRISADSLVE 378 L+ IVP L V A V +DI + +G+ A ++ AF + GK+ I+ D++ + Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 379 ERSGDQYYLVRVKVTEDGMKKLGNRKLQPGMPAEVLINAGDRTMLQYLLKPARNMFAESL 438 +R G + ++ N L GM I G R+++ YLL P ESL Sbjct: 416 QRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESL 475 Query: 439 IE 440 E Sbjct: 476 RE 477
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 110 bits (277), Expect = 8e-30 Identities = 73/354 (20%), Positives = 122/354 (34%), Gaps = 65/354 (18%) Query: 13 MKAIVTGITGQDGAYLAELLLEKGYTVYG-----TYRRTSSVNFWRIEELGIHTNPNLHL 67 MK +VTG G G ++++ LLE G+ V G Y S + R+E L P Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVS-LKQARLELLA---QPGFQF 56 Query: 68 VEYDLTDLSASIRLLQTTEATEVYNLAAQSFVGVSFEQPLTTAEITGLGAVNLLEAIRIV 127 + DL D L + V+ + V S E P A+ G +N+LE R Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 128 NPKARFYQASTSEMFGKVQEIPQVETTPF-YPRSPYGVAKLYAHWMTINYRESYNLFATS 186 + Y AS+S ++G +++P +P S Y K M Y Y L AT Sbjct: 117 KIQHLLY-ASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 187 GILFNHESPLRGRE-----FVTRKITDSVAKIKLGLLDKLELGNLDAKRDWGFAKEYVEG 241 F P GR T+ + + + I + KRD+ + + E Sbjct: 176 LRFFTVYGP-WGRPDMALFKFTKAMLEGKS-IDV-------YNYGKMKRDFTYIDDIAEA 226 Query: 242 MWRMLQADEPDT-------------------FVLATNRTETVRDFVTMAFKAAGIEINWS 282 + R+ + + + + D++ A GIE Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK-- 284 Query: 283 GKDEAEQGTCAASGKVLVAINPKFYRPAEVELLIGNPAKAKDVLGWEPKTNLEE 336 N +P +V + +V+G+ P+T +++ Sbjct: 285 -------------------KNMLPLQPGDVLETSADTKALYEVIGFTPETTVKD 319
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 93.3 bits (232), Expect = 5e-24 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 25/237 (10%) Query: 7 RALITGVHGFTGRYMAAELRAGGYEVFGTGS--------------QPLPAADYR--QVDL 50 + L+TG GF G +++ L G++V G + + L ++ ++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 51 TDGQGLRALLAELQPDVVVHLAAIAFVGHGTAD--AFYKVNLIGTRNLLEAIAACGKTPE 108 D +G+ L A + V V + + A+ NL G N+LE + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--IQ 119 Query: 109 CVLIASSANVYG-NVSEGMLGEQTPPAPANDYAVSKLAMEYMARLWCD--RLPIVITRPF 165 +L ASS++VYG N + + P + YA +K A E MA + LP R F Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 166 NYTGVGQAENFLLPKIVSHFRRKADTIEL-GNLDVWRDFSDVRAVVQAYRGLIEARP 221 G + L K + +I++ + RDF+ + + +A L + P Sbjct: 180 TVYGPWGRPDMALFKFTKAM-LEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 73.7 bits (181), Expect = 6e-17 Identities = 62/343 (18%), Positives = 118/343 (34%), Gaps = 42/343 (12%) Query: 5 TILVTGASGFVGGALCRQLATLGSFAI-------------RAASRDLGGASVAGIQAVTV 51 LVTGA+GF+G + ++L G + + A +L + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 52 ADLSATTDWARALSGVDLVVHAAARVHVMKETASDSL---AEFRRVNVDGTLNLARQAAA 108 AD TD A + V + R+ V SL + N+ G LN+ Sbjct: 62 ADREGMTD-LFASGHFERVFISPHRLAV-----RYSLENPHAYADSNLTGFLNILEGCRH 115 Query: 109 AGVRRFIFISSIKVNGESSQPGQPLRADDSPA-PQDAYGVSKHEAEQGLRQLAAATGMEV 167 ++ ++ SS V G + + P DDS P Y +K E + G+ Sbjct: 116 NKIQHLLYASSSSVYGLNRKM--PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 168 VVIRPVLVYGPGVKAN--FHSMMRWLQRGVPLP-FGAVCNRRSLVSLANLVDLVVTCIDH 224 +R VYGP + + + + G + + +R + ++ + ++ D Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 225 PRAANQTFLASDGDDVSLTQLLRALGLALGRPARLLPVPAGLLRGAVLLIGRRDLAQRLF 284 A+ + G + R + P L+ L +G A++ Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALED----ALGIE--AKKNM 287 Query: 285 GTLQ--------VDIEKNRQLLGWYPPCTLEQGLNMTARSFLG 319 LQ D + +++G+ P T++ G+ + Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.2 bits (128), Expect = 1e-09 Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 38/248 (15%) Query: 323 TVLVTGAGGSIGSELCRQIIGLGPTTLLLFDHSEYNLYAILSELEQRVARESLPVRLLPI 382 LVTGA G IG + ++++ G + + N Y +S + R+ + P Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGI---DNLNDYYDVSLKQARLELLAQP-GFQFH 57 Query: 383 LGSVRNQQHLAHVMSTWRVATVYHAAAYKHVPMVEHNMAEGILNNVFGTLCTAQAALQSG 442 + +++ + + ++ V+ + V N +N+ G L + + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 443 VANFVLIST---------------DKAVRPTNVMGGTKRLSELILQALSREAAPVMYGDS 487 + + + S+ D P ++ TK+ +EL+ S +YG Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-----LYG-- 170 Query: 488 SKIARVNKTRFTMVRFGNVLGSSGS---VIPLFHKQIKAGGPITV-THPKITRYFMTIPE 543 T +RF V G G + F K + G I V + K+ R F I + Sbjct: 171 --------LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDD 222 Query: 544 AAQLVVQA 551 A+ +++ Sbjct: 223 IAEAIIRL 230
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.005 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 88 EIEQLIEQNDALRAE-LERERAERLKLEASLKPRALTPQAHEAFKALAGELKAKTL 142 E++ E L+ E +E++R + LK E +LK L P+ +AFK +A EL L Sbjct: 275 GFEKISES---LKKEGVEKDRIDVLKGEKALKASGLVPEHADAFKKIARELNTYIL 327
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 55.0 bits (132), Expect = 2e-11 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 19/167 (11%) Query: 11 TGRDYPPAKL------SHASLIIIDAQKEYLSG-PLKLSGMDEAVANIARLLDAARKSGR 63 T D P K+ + A L+I D Q ++ S + E ANI +L + + G Sbjct: 13 TASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGI 72 Query: 64 PIIHVRHLGTV-----GGRFDPQGPA-------GQFIPGLEPLEGEIVIEKRMPNAFKNT 111 P+++ G+ D GP + I L P + ++V+ K +AFK T Sbjct: 73 PVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRT 132 Query: 112 KLHETLQELGHLDLIVCGFMSHSSVSTTVRRAKDYGYRCTLVEDASA 158 L E +++ G LI+ G +H T A + V DA A Sbjct: 133 NLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVA 179
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.0 bits (78), Expect = 9e-04 Identities = 65/338 (19%), Positives = 115/338 (34%), Gaps = 31/338 (9%) Query: 25 PFLALYFDHLGFSPARIGELVAIPMLMRCVAPNLWGWLGDRTGQRLLIVRLGALCTLATF 84 P L H A G L+A+ LM+ + G L DR G+R +++ Sbjct: 29 PGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL----------V 78 Query: 85 ALIFFGKSYAWLALVMALHAFFWHAVLPQFEVIT----LAHLHGQTSRYSQVRLWG---- 136 +L YA +A L + ++ T A++ T + R +G Sbjct: 79 SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSA 138 Query: 137 --SIGFILTVVGLGRLFEW-LSLDIYPVALVTIMAGIVAASLWVPNAQ-----PVEQGGR 188 G + V G + + + A + + + +P + P+ + Sbjct: 139 CFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGC-FLLPESHKGERRPLRREAL 197 Query: 189 SGTGGFLQQLRAPGVIAFYVCVALMQLSHGPYYTFLTLHLEH-LGYTRGAIGL-LWALGV 246 + F V A +MQL + E + IG+ L A G+ Sbjct: 198 NPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI 257 Query: 247 VAEVLMFMVMSRLFARFSVQRVLLVSFLLAALRWLLLGNLAQESAVLIFAQLLHAATFGC 306 + + M+ + AR +R L++ + ++LL + LL A+ G Sbjct: 258 LHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLL--ASGGI 315 Query: 307 FHAASIAFVQASFGARQQGQGQALYAALSGTGGALGAL 344 A A + +QGQ Q AAL+ +G L Sbjct: 316 GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.9 bits (101), Expect = 1e-06 Identities = 71/370 (19%), Positives = 129/370 (34%), Gaps = 16/370 (4%) Query: 30 PLLHSIAQQFGLSTASAGSIVIAAQLSYGAGLLLLAPLG----DLFEQRRLITMMTVVST 85 P+L + + S I L Y AP+ D F +R ++ + + Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLAL-YALMQFACAPVLGALSDRFGRRPVLLVSLAGAA 84 Query: 86 LGLVISACAPSLPWLLLGTALTGLFSVVAQILVPMAATLSEPHQRGRAVGTLMSGLLLGI 145 + I A AP L L +G + G+ + A +++ +R R G + + G+ Sbjct: 85 VDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGM 144 Query: 146 LLARTAAGFMAELGGWRSIYVLAAALMALTALALYRSLPQHHSHAGLKYPALIGSVFRLF 205 + G M + + AAAL L L LP+ H + F Sbjct: 145 VAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF 203 Query: 206 IEEPVLRLRSLLGLLAFSLFALFWTPLAF--LLANGPYHYSDAVIGL-FGLAGAAGAL-S 261 + + + L + F + + P A + +H+ IG+ G +L Sbjct: 204 RWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQ 263 Query: 262 ANWAGRLADRGKGSLGTTVGLVVLLLSWVPLGFAEQSLLALLLGVLMLDLAVQLVHVSNQ 321 A G +A R +G++ ++ L FA + +A + VL+ + + + Sbjct: 264 AMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323 Query: 322 NAVIALRPEARTRLNAGYITCYFIGGALGSLLGTQLF-----QRQGWMGIVVAGLVIGGL 376 + E + +L + +G LL T ++ GW I A L + L Sbjct: 324 LSRQV-DEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382 Query: 377 GLLVWGLAER 386 L GL Sbjct: 383 PALRRGLWSG 392
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (315), Expect = 4e-37 Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 21/256 (8%) Query: 7 LEGKVALVQGGSRGIGAAIVRRLAREGAQVAFTYVSSAGPAEELAREITENGGKALALRA 66 +EGK+A + G ++GIG A+ R LA +GA +A + E++ + A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 67 DSADAAAVQLAVDDTEKALGRLDILVNNAGVLAVAPVTEFDLADFDHMLAVNVRSVFVAS 126 D D+AA+ E+ +G +DILVN AGVL + +++ +VN VF AS Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 127 QAAARYM--GQGGRIINIGSTNAERMPFAGGAPYAMSKSALVGLTRGMARDLGPQGITVN 184 ++ ++YM + G I+ +GS N +P A YA SK+A V T+ + +L I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 185 NVQPGPVDTDMN--------------PASGEFAESLIPLMAIGRYGEPEEIASFVAYLAG 230 V PG +TDM S E ++ IPL + +P +IA V +L Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPL---KKLAKPSDIADAVLFLVS 240 Query: 231 PEAGYITGASLTVDGG 246 +AG+IT +L VDGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 68.2 bits (166), Expect = 2e-13 Identities = 65/320 (20%), Positives = 107/320 (33%), Gaps = 22/320 (6%) Query: 732 PREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAAEEATE 791 P E+ + + + EE A R + AP PP P E TE Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-RVDEAPVPPPAPATP---SETTE 1038 Query: 792 QAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDGSEEEG 851 AE ++++ E ++EQ+ T+ R + + + + Q N + GSE + Sbjct: 1039 TVAENSKQESKTVE--KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS--GSETKE 1094 Query: 852 SEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATAEVAAVAE-TDN 910 ++ + AT E A S + Q + + AE A + T N Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 911 SEAAQPVEQVEAATKAQEASVAPAVEQPVTEPVAAAEATAEPVVEVAPQPVAEDAPAVEP 970 + Q A T+ + VEQPVTE T V P +P Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTE-----STTVNTGNSVVENPENTTPATTQP 1209 Query: 971 VVVAETAVTETPAEAPVVEAGEIEQAPAVVEVAPVAAQPAPVVEAQPEVVAEPAPAVVEP 1030 T +E+ + + P VE + A ++ + AV+ Sbjct: 1210 -----TVNSESSNKPKNRHRRSVRSVPHNVE-PATTSSNDRSTVALCDLTSTNTNAVLSD 1263 Query: 1031 APAVVEPATVMLANGRAPND 1050 A A + V L G+A + Sbjct: 1264 ARA--KAQFVALNVGKAVSQ 1281 Score = 62.0 bits (150), Expect = 1e-11 Identities = 47/300 (15%), Positives = 85/300 (28%), Gaps = 22/300 (7%) Query: 494 NNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAPVAPAP 553 N Y++ E E+ Q + T P A VP+ P +A Sbjct: 973 NVNGRYDLYNPEVEKRNQTV--------DTTNITTPNNIQADVPS---VPSNNEEIARVD 1021 Query: 554 SAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQSRNRNG 613 AP P S + ++ + E+ A E + +N E + + N Sbjct: 1022 EAPVPPPAPAT-PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANT 1080 Query: 614 RRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAPREERAPRQPREDR 673 + +E + E E E + EE+A E +E + +P+Q + Sbjct: 1081 QTNEVAQSGSETKETQTTETKETATVEK--EEKAKVETEKTQEVPKVTSQVSPKQ-EQSE 1137 Query: 674 RGNRGEERVRELREPLDATPPAEREERQPREERVAREERA---PREERAPREERAPREER 730 E RE ++ P + E+ A+E + + Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 731 APREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAAEEAT 790 P + E + + + R P +R A + T Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSV----PHNVEPATTSSNDRSTVALCDLT 1253 Score = 61.6 bits (149), Expect = 2e-11 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 24/286 (8%) Query: 676 NRGEERVRELREPLDATPPAEREERQP----REERVAREERAPREERAPREERAPREERA 731 N E+ + + + T P + P E +AR + AP AP E A Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 732 --PREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPRE--ERQPRAAE 787 ++E E+ + R +E + + + E E Q + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 788 EATEQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDGS 847 E E E+ E Q+ + T P++ + R+ + + + Sbjct: 1102 ETATVEKE--EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 848 EEEGSE---EQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATAEVAA 904 + + EQP + ++ + + V ++ + + AT + Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTESTTVNT--------GNSVVENPENTTPATTQPTV 1211 Query: 905 VAETDNSEAAQPVEQVEAATKAQEASVAPAVEQPVTEPVAAAEATA 950 +E+ N + V + E VA + T+ Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVE---PATTSSNDRSTVALCDLTS 1254 Score = 40.4 bits (94), Expect = 5e-05 Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 27/197 (13%) Query: 483 QRLRDDNPEVLNNQSSYEIA--AAEAEEAPQPTATRTLVRQEAAVKT--------APARA 532 + ++ V N + E+A +E +E Q T T+ E K + Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKET-QTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 533 NAPVPAAAEEPQAAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAA 592 + V E+ + P A +P++ EP + A + A Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTV-------------NIKEPQSQTNTTADTEQPA 1172 Query: 593 ERSPRNEERRNGRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREER 652 + + N E+ + N G E A P + R R+ R Sbjct: 1173 KETSSNVEQPVTESTTVNT-GNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV- 1230 Query: 653 APREERAPREERAPRQP 669 P R Sbjct: 1231 -PHNVEPATTSSNDRST 1246
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.034 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%) Query: 34 GADSLDTVELVMALEEEFETEIPDEEAEKIT-----TVQAAIDYVK 74 GA++LDT + + A E + P VQ +I V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVV 341
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 32.4 bits (73), Expect = 0.004 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 367 QASGADDAQRPEPPAADPSATDEPTAQPAPDEAPAQDA---PAGGAQAAERPTPD 418 Q + D Q P P + + P AQP P+ +PA++ PA RP P+ Sbjct: 300 QGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPE 354 Score = 31.3 bits (70), Expect = 0.008 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 354 PQQEAKPGADDAEQASGADDAQRPEPPAADPSATDEPTAQPAPDEAPAQDA---PAGGAQ 410 P+ + PG+ +A A + E PA +P+ + P +P P+ P + P Q Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQ 370 Query: 411 AAERP 415 RP Sbjct: 371 PGTRP 375
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 30.5 bits (68), Expect = 0.003 Identities = 20/73 (27%), Positives = 29/73 (39%) Query: 1 MHSGIDIRVARPEDAEEIQIIYAPIVLNTAISFEEAVPSVEQMRERISTTLQTYPYLVAV 60 M + + P+D Q + PIV EEA PS+EQ ++ Y + Sbjct: 1 MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGI 60 Query: 61 REGRVVGYAYASQ 73 EGR G+ Q Sbjct: 61 AEGRQQGHKQGYQ 73
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 26.7 bits (58), Expect = 0.047 Identities = 7/20 (35%), Positives = 10/20 (50%) Query: 113 IHCKGGSGRTGLFAARLLIE 132 IHC+ G GRT + + Sbjct: 401 IHCRAGVGRTAQLIGAMCMN 420
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 2e-10 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 10 ATLRAEQQQETREKLLRATIETISYKGYQSATIDNITSHAGTGRATFYLHFRSKPEALMA 69 A ++ QETR+ +L + S +G S ++ I AG R Y HF+ K L + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK-SDLFS 60 Query: 70 GWQEIYMPQMVNILQNLDESYPA 92 E+ + + +P Sbjct: 61 EIWELSESNIGELELEYQAKFPG 83
>PF05043#Transcriptional activator Length = 493 Score = 31.8 bits (72), Expect = 0.004 Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 8 LNLLLLLDELYREQNLSAAARRLGMSQPMASASLRRLREYFEDQLFLSTGRGMR 61 L LL LL E R + S A L ++ L ++ F D +F S+ G+R Sbjct: 13 LELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIR 66
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 127 bits (319), Expect = 1e-37 Identities = 74/254 (29%), Positives = 112/254 (44%), Gaps = 19/254 (7%) Query: 9 GKVVLVTGAGSGIGRATALAFAQSGASVAVADISTDHGLKTVELVKAEGGEATFFHVDVG 68 GK+ +TGA GIG A A A GA +A D + + K V +KAE A F DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 69 SEPSVQSMLAGVVAHYGGLDIAHNNAGIEANIVPLAELDSDNWRRVIDVNLSSVFYCLKG 128 ++ + A + G +DI N AG+ + L + W VN + VF + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 129 EIPLMLKRGGGAIVNTASASGLIGGYRLSGYTATKHGVVGLTKAAAIDYANQNIRINAVC 188 M+ R G+IV S + ++ Y ++K V TK ++ A NIR N V Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 189 PGPVDSPFLADMPQPM--------------RDRLLFGTPIGRLATAEEIARSVLWLCSDD 234 PG ++ DM + + G P+ +LA +IA +VL+L S Sbjct: 187 PGSTET----DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 235 AKYVVGHSMSVDGG 248 A ++ H++ VDGG Sbjct: 243 AGHITMHNLCVDGG 256
>PF03944#delta endotoxin Length = 633 Score = 30.4 bits (68), Expect = 0.018 Identities = 14/31 (45%), Positives = 17/31 (54%) Query: 369 APSDKTGWYVRPTVYTNVNNSMRIAREEIFG 399 AP+D TG+ + P T VNN R E FG Sbjct: 487 APNDYTGFTISPIHATQVNNQTRTFISEKFG 517
>PF07520#Virulence protein SrfB Length = 1041 Score = 31.5 bits (71), Expect = 0.010 Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 22/152 (14%) Query: 15 AGSAGCVLANRLSANPEHSVLLLEAGSRPKGLWASMP---------AGVSRVILPGPTNW 65 A +LA + E+SV L A W +P AG + PGP++W Sbjct: 68 AERDAPILAATTPEDDEYSVRPLAALEPFLEKWVPIPVLRLKNQRGAGGEELYDPGPSSW 127 Query: 66 AY-----QSEPDPSLAG-RRIYVPRGKALGGSSAINGMAYLRGHREDYDHWVSLGCAGWG 119 A +PDP R+ + AL S Y+ R D + Sbjct: 128 ARLRTVELPQPDPETGHTHRVQIALDTAL--SDQDQSAHYVAPERADSEKPREFRLV--S 183 Query: 120 WDDVLPFYKKFEHREEGDEAFRGRDGELWVTD 151 + + F R E DE D +LWV+D Sbjct: 184 DPGAMSW---FLQRLEADEDGNAVDLQLWVSD 212
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (316), Expect = 6e-37 Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 26/271 (9%) Query: 9 VEGARVIVTGAASGLGLAFTEAMAESGAQVAMLDLNREALDAQFRRLRSLGYSVRSHVLD 68 +EG +TGAA G+G A +A GA +A +D N E L+ L++ + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 69 VTDRDAVDDTFNAVAAGFGGLDIVFANAGI-DPGPGFAALNAAGEREPANMLEEYSDHRW 127 V D A+D+ + G +DI+ AG+ PG + SD W Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGL----------------IHSLSDEEW 109 Query: 128 RKVISVSLDAVFYSIRAAARHMRANRSGSIIVTTSVSALRPAVTLGAAYAAAKAGAAQLV 187 SV+ VF + R+ +++M RSGSI+ S A P ++ AYA++KA A Sbjct: 110 EATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMA-AYASSKAAAVMFT 168 Query: 188 RATALELASDGVRVNAIAPGPFETDIGGGFMHNSEVRAKMAA--------GVPMGRIAEV 239 + LELA +R N ++PG ETD+ + ++ G+P+ ++A+ Sbjct: 169 KCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKP 228 Query: 240 EEIKPLALYLASKASSFVTGQQFVIDGGLSL 270 +I L+L S + +T +DGG +L Sbjct: 229 SDIADAVLFLVSGQAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 129 bits (324), Expect = 3e-38 Identities = 81/278 (29%), Positives = 125/278 (44%), Gaps = 43/278 (15%) Query: 4 QNKIVVLTGAASGIGKATAQLLVEQGAHVVAMDLKSDLLQQAFGSEE----HVLCIPTDV 59 + KI +TGAA GIG+A A+ L QGAH+ A+D + L++ S + H P DV Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 60 SDSEAVRAAFQAVDAKFGRVDVIINAAGINAPTREANQKMVDANVAALDAMKSGRAPTFD 119 DS A+ ++ + G +D+++N AG+ + ++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGV-------------LRPGLIHSL--------- 104 Query: 120 FLADTSDQDFRRVMEVNLFSQFYCIREGVPLMRRAGGGSIVNISSVAALLGVAMPLYYPA 179 SD+++ VN F R M GSIV + S A + Y + Sbjct: 105 -----SDEEWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYAS 159 Query: 180 SKAAVLGLTRAAAAELAPYNIRVNAIAPGSVDTPL-----MHEQPPEVV------QFLVS 228 SKAA + T+ ELA YNIR N ++PGS +T + E E V F Sbjct: 160 SKAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG 219 Query: 229 MQPIKRLAQPEELAQSILFLAGEHSSFITGQTLSPNGG 266 + P+K+LA+P ++A ++LFL + IT L +GG Sbjct: 220 I-PLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.2 bits (65), Expect = 0.016 Identities = 8/44 (18%), Positives = 24/44 (54%) Query: 5 DTRRRLIELIAEHHASHPGKKLGIEELSRRAGISRQSFNRYYKD 48 +TR+ ++++ + + E+++ AG++R + ++KD Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKD 54
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 48.5 bits (115), Expect = 1e-07 Identities = 54/356 (15%), Positives = 123/356 (34%), Gaps = 12/356 (3%) Query: 708 RRLDEEISQDEKRQSALLALQRDAARLNQQLQAAHDAQQQAQRHLEQQHQALANDEQLLQ 767 L + S AL + + ++ + Q L + L+ Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLE 126 Query: 768 QGLNDLAGVLPEEALKALNDDPANAFLALDQQIAQRLQQLEQRKDELEEQQARQTQLDKL 827 + L A + A++ + + + A ++ L Sbjct: 127 KALEGA-----MNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 828 RDQQQARVQGQQQLQQKLAALDEQRQQALASLAELLGEHASAEAWQQHMDTALEHARTLD 887 ++ A Q +L++ L A + L E A+ A + ++ ALE A Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 888 ADTAQRLQDLRTQGVQLASELKANTQQQQALDAECQQLQAQIAQWRSEHPELDD--AGLD 945 + +++ L + L + + + A+I +E L+ A L+ Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 946 RLLAMDDAQVNELRQRLQGAEKAIEQGRVLLQEREQRLQHHAAQMT-----VDTTVQALE 1000 + +A LR+ L + +A +Q Q+ E++ + A +D + +A + Sbjct: 302 HQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 361 Query: 1001 QALAELRERLANHEQQCAELRAQQADDQRRQQAHQALAAEIEQAHQQWQRWARLNA 1056 Q AE ++ ++ A ++ + D ++A + + +E+A+ + +LN Sbjct: 362 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNK 417 Score = 42.4 bits (99), Expect = 1e-05 Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 15/306 (4%) Query: 637 QKQVETLNSKLVELRTQLGVVNAQLKDFQQQQQRLGEQLQPLVAQVQAHSLWP---ALAP 693 +K +E + ++ + A+ ++ L + L+ + A S Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 694 QDDKARSAWLDSQLRRLDEEISQDEKRQSALLALQRDAARLNQQLQAAHDAQQQAQRHLE 753 +AR A L+ L + D + L A + A L+ A + Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 754 QQHQALANDEQLLQQGLNDLAGVLPEEALKALNDDPANAFLALDQQIAQRLQQLEQRKDE 813 + + L ++ L+ +L E+AL+ + + A++ ++ D Sbjct: 246 AKIKTLEAEKAALEARQAEL-----EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADL 300 Query: 814 LEEQQARQTQLDKLRDQQQARVQGQQQLQQKLAALDEQRQQALASLAELLGEHASAEAWQ 873 + Q LR A + ++QL+ + L+EQ + + AS L + ++ + Sbjct: 301 EHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAK 360 Query: 874 QHMDTALEHARTLDADTAQRLQDLRTQGVQLASELKANTQQQQALDAECQQLQAQIAQWR 933 + ++ + + + Q LR L A+ + ++ ++ ++ +++A Sbjct: 361 KQLEAEHQKLEEQNKISEASRQSLRRD-------LDASREAKKQVEKALEEANSKLAALE 413 Query: 934 SEHPEL 939 + EL Sbjct: 414 KLNKEL 419 Score = 38.5 bits (89), Expect = 2e-04 Identities = 46/294 (15%), Positives = 94/294 (31%), Gaps = 14/294 (4%) Query: 314 RQALSAQLAPVAAKIAEQQQQQAELQVRTRELEQALDTARQALADRQAEHGENAPRLRQA 373 L + + ++ + EL ++ L ++L+++ ++ E R Sbjct: 66 NNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADL 125 Query: 374 FAAQDTLARLDQELAAQRSISQQAQQQVADGQQQLQQ-----LEDNQQRSVQQLALIDTA 428 A + +A+ + + +A + L++ + + S + L Sbjct: 126 EKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK 185 Query: 429 LADSQHLAGLANAWHAYLPQLKQVMLIGGRLTKGREELPGLQAQASQANARLQAERDAYD 488 A A L A + L + L +A +A A Sbjct: 186 AALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 245 Query: 489 LLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQELRQQLDALRERQQQ 548 + +AE AL + L + + A+ + + + L + AL + Sbjct: 246 AKIKTLEAEKAALEARQAEL------EKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 549 AMLQRQQLITEGTAAKAELEAAEQA---LTLTRQLLERQRLARNTSVEELRNQL 599 Q Q L + + +L+A+ +A L Q LE Q S + LR L Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353 Score = 38.5 bits (89), Expect = 2e-04 Identities = 50/313 (15%), Positives = 98/313 (31%), Gaps = 16/313 (5%) Query: 464 EELPGLQAQASQANARLQAERDAYDLLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVE 523 + L + S A +L+ + + + A+ L G + + ++ Sbjct: 85 DHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIK 144 Query: 524 EMSRLHGREQELRQQLDALRERQQQAMLQRQQLITEGTAAKAELEAAEQALTLTRQLLER 583 + + L+ E I A KA LEA + L + Sbjct: 145 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN 204 Query: 584 QRLARNTSVEELRNQLRDGEPCPVCGSAEHPFHQPEALLQSLGRHDQAEEHAAQKQVETL 643 A + ++ L + +A L+ A +++TL Sbjct: 205 FSTADSAKIKTLEAEKAALA-------------ARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 644 NSKLVELRTQLGVVNAQLKDFQQQQQRLGEQLQPLVAQVQAHSLWPALAPQDDKARSAWL 703 ++ L + + L+ +++ L A+ A A + +A Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 704 DSQLRRLD---EEISQDEKRQSALLALQRDAARLNQQLQAAHDAQQQAQRHLEQQHQALA 760 S R LD E Q E L + + Q L+ DA ++A++ LE +HQ L Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLE 371 Query: 761 NDEQLLQQGLNDL 773 ++ + L Sbjct: 372 EQNKISEASRQSL 384 Score = 35.4 bits (81), Expect = 0.002 Identities = 38/289 (13%), Positives = 87/289 (30%), Gaps = 12/289 (4%) Query: 315 QALSAQLAPVAAKIAEQQQQQAELQVRTRELEQALDTARQALADRQAEHGENAPRLRQAF 374 + + + + + + ++L + L+ D + L++ + + +N L + Sbjct: 53 EKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKA 112 Query: 375 AAQDTLARLDQELAAQRSISQQAQQQVADGQQQLQQLEDNQQRSVQQLALIDTALADSQH 434 + L +L + + + L+ + L + Sbjct: 113 SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL---------EKA 163 Query: 435 LAGLANAWHAYLPQLKQVMLIGGRLTKGREELPGLQAQASQANARLQAERDAYDLLFREA 494 L G N A ++K + L + EL A + A+ + Sbjct: 164 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 223 Query: 495 KAEPQALAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQELRQQLDALRERQQQAMLQRQ 554 A L + ++ + + + +E + + +L+ E Sbjct: 224 AARKADLEKALEGAMNFSTADSAKIKTLEA---EKAALEARQAELEKALEGAMNFSTADS 280 Query: 555 QLITEGTAAKAELEAAEQALTLTRQLLERQRLARNTSVEELRNQLRDGE 603 I A KA LEA + L Q+L R + ++ R + E Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE 329 Score = 32.3 bits (73), Expect = 0.013 Identities = 53/310 (17%), Positives = 94/310 (30%), Gaps = 21/310 (6%) Query: 202 QRAFSKAREAGEAHNALKERASHLLPMAAEARAELDQRLEQAQQQFKADQAGERQLEQQR 261 A S + EA A L A E + +A++A LE ++ Sbjct: 136 STADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA---ALEARQ 192 Query: 262 NWLNEQRQLQAQHTEASTTLQAAELDWQQLAEPRLDLARLERLAPQRHQFHRRQALSAQL 321 L + + + A + + R + Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 252 Query: 322 APVAAKIAEQQQQQAELQVRTRELEQALDTARQALADRQAEHGENAPRLRQAFAAQDTLA 381 A AA A Q + + L+ + A++ A E A Q+ Sbjct: 253 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312 Query: 382 RLDQELAAQRSISQQAQQQVADGQQQLQQLEDNQQRSVQQLALIDTALADSQHLAGLANA 441 L ++L A R + + + Q+LE+ + S + L S+ A Sbjct: 313 SLRRDLDASR-------EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365 Query: 442 WHAYLPQLKQVML-----IGGRLTKGREELPGLQAQASQANARLQA------ERDAYDLL 490 H L + ++ + L RE ++ +AN++L A E + L Sbjct: 366 EHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKL 425 Query: 491 FREAKAEPQA 500 + KAE QA Sbjct: 426 TEKEKAELQA 435
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.8 bits (93), Expect = 1e-05 Identities = 21/136 (15%), Positives = 53/136 (38%), Gaps = 2/136 (1%) Query: 57 ASGELEAVNQVQ-VAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRN 115 A+G+L + + + + I + G++V G +L++L +A ++ Q+ L Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 116 ADVVLQRSRKL-RAMNAVSQELLDNAATAVDVARGELQHVEALIAQKAIRAPFAGKLGIR 174 A + R + L R++ L E + + K + + + + Sbjct: 146 ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK 205 Query: 175 RVHQGQYLAAGETIVS 190 ++ + A T+++ Sbjct: 206 ELNLDKKRAERLTVLA 221 Score = 31.0 bits (70), Expect = 0.007 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 13/135 (9%) Query: 91 GQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGE 150 QL + L + + +L + KLR L E Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL-----------TLE 317 Query: 151 LQHVEALIAQKAIRAPFAGKLGIRRVH-QGQYLAAGETIVSLA-DISQLHVNFALGEQAA 208 L E IRAP + K+ +VH +G + ET++ + + L V + + Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDI 377 Query: 209 PEVHAGQVLALTVDA 223 ++ GQ + V+A Sbjct: 378 GFINVGQNAIIKVEA 392
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 778 bits (2011), Expect = 0.0 Identities = 313/1029 (30%), Positives = 521/1029 (50%), Gaps = 29/1029 (2%) Query: 5 DVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQGFVT 64 + F+RRP+ A V++ ++++ G A+ +LP+ QYP + +++S YPGA A+ +Q VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 QPITQAVSSVEGIDYLSSSSQQ-GRSLITLRMVLNRDSTQALAETMAKVNQVRYRLPEKA 123 Q I Q ++ ++ + Y+SS+S G ITL D A + K+ LP++ Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 YDPVVELSAGDSTAVAYVGFASDS--LSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQR 181 + + S+ + GF SD+ + ++SDY++ V+ S ++GV VQ FG Q Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 182 LAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQV------RGQYVLADIQVDTDLT 235 AMR+WLD++ + +T DV ++ N Q GQ+ GQ + A I T Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 RVEDFRELIIR-NDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLV 294 E+F ++ +R N +VRL+D+ VEL A ++GKPA LG+ N L Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 IVEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGS 354 + I+ L ++Q P G+ V Y+T F+ SIHEV++TL EA+++V LV++L L + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 LRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIE 414 +R+ LI +A+P+ +LG ++ FG+S+N LT+ MVLAIGL+VDDAIVVVENV R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EGKS-PIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVS 473 E K P A +I G ++ + + L+AV+ P+ GG TG ++R+F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GIVALTLSPVMSSLLLQPGQQH-----GAMAAIADRLFGTLSGVYGRVLAYTLAHRWISG 528 +VAL L+P + + LL+P G + F Y + L Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 GVALLVCLSLPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALK-LDQVMKSI 587 + L+ + L+L P EDQ LT I+ P A+ E ++ + D +K+ Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 588 AET-----TDTWIINGTDGPAASFGGINLSAWQAR---ERSAAQVQAQLQQAVADIEGSS 639 T A ++L W+ R E SA V + + + I Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 640 IFAFQVA--SLPGSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARDS-GLFAVVDSDLDY 696 + F + G++ G +++ ++ + L Q L A V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 697 NNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLT 756 + K+ VD+ KA +LG+S+ I +++ +G Y+N F GR + Q+ R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 757 PAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVA 816 P + + YVR+ +G +VP + RL +++ + +Q APG S G+A+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 817 FLEQLTAELPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIIL 876 +E L ++LP G +DW S Q G + VV++L LAA YES P+ ++ Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 877 VTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAA 936 + VPL I G LL L ++Y +GL+T IGL +K+ IL+V FA ++ ++ Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 937 AIVRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVL 996 A + A ++RLRP+LMT+ A GVLPL ++GAG+ ++ +G+ ++ GM+ TL +F + Sbjct: 962 ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFV 1021 Query: 997 PTIYAWLAR 1005 P + + R Sbjct: 1022 PVFFVVIRR 1030
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 97.6 bits (243), Expect = 7e-24 Identities = 71/394 (18%), Positives = 156/394 (39%), Gaps = 17/394 (4%) Query: 46 FMAGMNVHVTSAALPEIRGSLGASFEEGSWISTAYLVAEIVMIPLTAWLVDVFSLRRVMW 105 F + +N V + +LP+I +W++TA+++ + + L D ++R++ Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 106 TGSLIFLIASVACSWAPN-LEAMIVIRVIQGAAGAVLIPLSFQLIITELPASKMAMGMAL 164 G +I SV + +I+ R IQGA A L ++ +P L Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 165 FSLANSVAQAAGPSIGGWLTDAYSWRWIFYLQLFPGIALLLAIAWSIEAKPMKLELLRKG 224 ++ + GP+IGG + W ++ + + I + + + +K Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHF---- 199 Query: 225 DWLGIAAMVIGLGGLQIVLEEGGRLDWFGSPLIVGMSVVAAIALVVFVVTQLFGQRAFIN 284 D GI M +G+ + +L F + + +V+ ++ ++FV F++ Sbjct: 200 DIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 285 LRLLGHYNFGVASVAMFIFGAATFGLVFLVPNYLSQLQGFSAHDVGVALIAYGVVQLLL- 343 L + F + + I G V +VP + + S ++G +I G + +++ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 344 APLMPRLMGWTSAKFMVASGFLIMALGCWLGAGLSADSADNVIIPSTVVRGIGQPFIMVA 403 + L+ +++ G +++ +L A ++ + V G F Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 404 LSVLAVAGLDKREAGSASAVFSMLRNLGGAIGTA 437 +S + + L ++EAG+ ++ + L G A Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 127 bits (321), Expect = 1e-34 Identities = 67/428 (15%), Positives = 134/428 (31%), Gaps = 77/428 (17%) Query: 52 PSPAETEQRPSAKTRRRLAVIASGSLAAITLLAFTSYWFSTGRY---LETTDDAYVRADW 108 P+ E + P ++ R +A + ++AF G+ Sbjct: 43 PAHLELIETPVSRRPRLVAYF----IMGFLVIAFI--LSVLGQVEIVATANGKLTHSGRS 96 Query: 109 VALSPRVAGYVAKVEVADDQPVKAGDVLVRLQNRDYRARLDQARAGVTEAQA-------- 160 + P V ++ V + + V+ GDVL++L A + ++ + +A+ Sbjct: 97 KEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156 Query: 161 -------------------------------------ALAAAQASQQVATERIDQQQQAI 183 + Q + +D+++ Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216 Query: 184 LQAEAVVRSATAEQRRSELDVQRYRGLVRDDAATVQRLETASAHASQAQAALQGAQAALR 243 L A + R + + + L+ A + +A L+ ++ L Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 244 QQRSQLAMAKARAAQAEAELQQRAAALARAQAHQQL---------AEQDEQDTVIRAPIT 294 Q S++ AK + Q + E+ +Q +VIRAP++ Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILD-KLRQTTDNIGLLTLELAKNEERQQASVIRAPVS 335 Query: 295 GVVGQRRVRT-GQYVVPGQPLLAVVPLQQAYVV-ANYKETQLARMRPGQPVEIRVDSFAS 352 V Q +V T G V + L+ +VP V A + + + GQ I+V++F Sbjct: 336 VKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPY 395 Query: 353 Q---PLHGHVASFSPASGNVFALLPSDNATGNFTKIVQRFPVRILLDKPLDGPQVLPGMS 409 L G V + + + D G ++ L + GM+ Sbjct: 396 TRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTG-NKNIPLSSGMA 447 Query: 410 VVSTVDTR 417 V + + T Sbjct: 448 VTAEIKTG 455
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.0 bits (202), Expect = 9e-21 Identities = 61/201 (30%), Positives = 81/201 (40%), Gaps = 17/201 (8%) Query: 3 IANKHFIVSGAASGLGAATAQMLVEAGAKVMLVDLNAQAVEAKARELGDNARFA---VAD 59 I K ++GAA G+G A A+ L GA + VD N + +E L AR A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 ISDEQAAQSAVDAAVSAFGSLHGLVNCAGI--VGAEKVLGKQGPHGLASFAKVINVNLIG 117 + D A G + LVN AG+ G L + + +VN G Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE------EWEATFSVNSTG 119 Query: 118 SFNLLRLAAAAMAEGAADESGERGVIINTASIAAYDGQIGQAAYAASKGAIASLTLPAAR 177 FN R + M G I+ S A + AAYA+SK A T Sbjct: 120 VFNASRSVSKYM------MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGL 173 Query: 178 ELARFGIRVMTIAPGIFETPM 198 ELA + IR ++PG ET M Sbjct: 174 ELAEYNIRCNIVSPGSTETDM 194
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 26.6 bits (58), Expect = 0.033 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 35 INGNGNGNGNGNGNGNGNSR 54 +NG +G+G+G G G G S+ Sbjct: 25 LNGTPDGSGSGGGGGKGGSK 44
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.016 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 76 LLVARGVLRADKQPPRSAFVHIPLALRDPHGLAALSMITTVVPG 119 LL A+ L DKQP + A + I LRD HG + M+ PG Sbjct: 309 LLAAKPYLPFDKQPGQKAMLGIGEVLRDTHG-CTVQMLPIDKPG 351
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.5 bits (66), Expect = 0.038 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 482 QEVQQEQQQQQMQQAMQSGVAPAVQAAGRMM 512 + QQ+Q Q Q QQA + AA R++ Sbjct: 338 PQAQQQQGQGQQQQAQATAQEAVAAAAVRLL 368
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.7 bits (69), Expect = 0.034 Identities = 12/42 (28%), Positives = 15/42 (35%) Query: 436 EEPKTVDLPPEEPRAPEEPPAAGEPRDEPQEPSVGTPGRKQP 477 EP PP EP EP P + P V + +P Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 96
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.024 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 6/83 (7%) Query: 292 DWLVQVPWKAQSKVRLDLAKAEEILDADHYGLEEVKERILEYLAVQKRVKKIRGP----- 346 DW+ W ++ L D+ +++ + V ++ P Sbjct: 537 DWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFD 596 Query: 347 -VLCLVGPPGVGKTSLAESIAAA 368 + L G G+GK++L ++ Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 120 bits (303), Expect = 1e-39 Identities = 48/88 (54%), Positives = 64/88 (72%) Query: 2 NKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTGR 61 NK +LI +A + ++ K + A+DAV +V+ L +G+ V L+GFG F V+ERA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKAIKIEAAKVPGFKAGKGLKDAV 89 NPQTG+ IKI+A+KVP FKAGK LKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 30.8 bits (69), Expect = 0.012 Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 536 GEDGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLV 573 GE ++ F +D P++ +VVLRDG LV Sbjct: 203 GEATVESLRHALFFEKTLTNGEDNPLWRTVVLRDGLLV 240
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.8 bits (67), Expect = 0.003 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 30 LIAVPLFILGTLLVLSGLFGFDLGQIAVGVIALIAALGL 68 IAVP+ +LGT +L+ FG+ + + + + L A+GL Sbjct: 369 TIAVPVVLLGTFAILA-AFGYSINTLTMFGMVL--AIGL 404
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.4 bits (118), Expect = 8e-10 Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 5 ILLVEDNPRDLELTLLALERSQLANEVIVLRDGADALDYLLRRNAYAERDDGNPAVLLLD 64 IL+ +D+ + AL R +V + + A ++ G+ +++ D Sbjct: 6 ILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWI---------AAGDGDLVVTD 54 Query: 65 LKLPKVDGLEVLKEVRATAELRSIPTVMLTSSREEPDLLRAYELGVNAYVVKPVEFKEFV 124 + +P + ++L ++ +P +++++ ++A E G Y+ KP + E + Sbjct: 55 VVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 125 TAI 127 I Sbjct: 113 GII 115
>PF06580#Sensor histidine kinase Length = 349 Score = 40.2 bits (94), Expect = 2e-05 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 28/143 (19%) Query: 591 LLNFSQMGRSALRLSDVDLNAL---VEAIRSELAPD---YEGR-AIVWDIAPLPKVIGDP 643 L + S++ R +LR S+ +L + + S L +E R I P + P Sbjct: 197 LTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVP 256 Query: 644 AFINMALHNLIANAIKY--TRGRTPARIEISAVQHPEETEVCIRDNGVGFDMAYANKLFG 701 + + L+ N IK+ + +I + + + + + G Sbjct: 257 PML---VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG------------- 300 Query: 702 VFQRLHRMEDFEGTGIGLASVRR 724 L E TG GL +VR Sbjct: 301 ---SLALKNTKESTGTGLQNVRE 320
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 509 bits (1311), Expect = e-170 Identities = 152/811 (18%), Positives = 265/811 (32%), Gaps = 80/811 (9%) Query: 58 TLYLDLVVNQMPR----VDLIPVQQRAG-RLYLDSDVLRAAGVSLPGNPQGEVALDS--- 109 T +D+ +N V G L L + G++ + D Sbjct: 77 TYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACV 136 Query: 110 -----IAGLHTDYDSQNQRLLLQVPPAWLPEQQVGDRNLYPASDARSSFGALFNYDLYIN 164 I D QRL L +P A++ + G + P L NY+ N Sbjct: 137 PLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGY--IPPELWDPGINAGLLNYNFSGN 194 Query: 165 DTD--EGGTYLAAWNELRLFDSWGTFSSTGQWRQSFKGAQADDTRRGFMRYDTTWRFTDE 222 GG A+ L+ + G + S+ + + + ++ TW D Sbjct: 195 SVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDI 254 Query: 223 QRLL-TYEAGDFVTGALPWSSSVRVGGVQLSRDFAARPDLVTYPLPAFAGEAAVPTSLDL 281 L GD T + + G QL+ D PD P G A + + Sbjct: 255 IPLRSRLTLGDGYTQGDIFDG-INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTI 313 Query: 282 FINGFKSSTTELQPGPYTLTNVPFINGVGEAVVVTTDALGRQVSTTLPFYVTSSLLQKGL 341 NG+ + + PGP+T+ ++ G+ V +A G T+P+ L ++G Sbjct: 314 KQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGH 373 Query: 342 SDYSVAAGSLRRDYGVRDFSYGPGIASGSLRYGLSDMFTLETHAETAESLMLGGLGGNMR 401 + YS+ AG R ++ P +L +GL +T+ + A+ G Sbjct: 374 TRYSITAGEYRSGNAQQE---KPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKN 430 Query: 402 VGNFGVLNAALAQSR--FEGDKGHQ-------------------VALGYQYNSQR-IGFG 439 +G G L+ + Q+ D H +GY+Y++ F Sbjct: 431 MGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFA 490 Query: 440 YQRLQRHGDYADLSRVVSPDMQL-----------SKSSEQVTLSVNLNEYGSIGAGYFDV 488 R Y ++ ++ + Q+T++ L ++ Sbjct: 491 DTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQ 550 Query: 489 R-AGDGTRTRLINLSYSKPL-WGSSSVYLSANREVGDSQWAVQAQLVIPFDL-------- 538 G + + ++ S + L + Sbjct: 551 TYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDS 610 Query: 539 -----HGTLALSMERSNEGETLQRVNYSRAVPAGVGVGYNL--GYAAGSD--RDAYRQAD 589 H + + SM G + + Y++ GYA G D + A Sbjct: 611 KSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYAT 670 Query: 590 VTWRLQSVQLQAGTYGSSGEMTRWADASGSLVWMDAGVFAANRIDDAFVVVSTAGYADVP 649 + +R G S + SG ++ GV ++D V+V G D Sbjct: 671 LNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAK 730 Query: 650 VRYENQEIGRTDAKGHLLVPYSSGYYRGKYEIDPMNLPPDVLAPDVEQRVAVRRGSGYLL 709 V ENQ RTD +G+ ++PY++ Y + +D L +V + V RG+ Sbjct: 731 V--ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRA 788 Query: 710 EFPLKRVMAASVELVDGNQQVLKLGSRVTHAESGTQAVVGWDGLVYLENLSSHNRLQVAL 769 EF + + + N + L G+ VT S + +V +G VYL + ++QV Sbjct: 789 EFKARVG-IKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKW 847 Query: 770 --EGGGHCEVAFDLPEAQGSVPLIG-PLVCR 797 E HC + LP L CR Sbjct: 848 GEEENAHCVANYQLPPESQQQLLTQLSAECR 878
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.4 bits (68), Expect = 0.007 Identities = 8/37 (21%), Positives = 15/37 (40%) Query: 197 IGAALAHLREHYAEPLSVEALAARANMSVSTFHEHFK 233 + AL + S+ +A A ++ + HFK Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFK 53
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 50.3 bits (120), Expect = 3e-09 Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 19/201 (9%) Query: 56 TPLTVQHKLGTTVISQLPQRTVALDMNEVDFLDQLGVPVAGMPKDFVPDFLARYKD---- 111 +PL Q + P R VAL+ V+ L LG+ G V D Y+ Sbjct: 19 SPLLWQMNTAHAA-AIDPNRIVALEWLPVELLLALGIVPYG-----VAD-TINYRLWVSE 71 Query: 112 ---AGQTADVGSIVQPNLERVHAARPDLILITSLQANHYDELSEMAPTLHFDVDYRDSET 168 DVG +PNLE + +P ++ ++ + L+ +AP F+ Sbjct: 72 PPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQP- 130 Query: 169 GHVAMVRQHLLSLGQVFGKQGLAQRKADALEAKLAQARS--VTRDRPERALVVLHNNGAF 226 +AM R+ L + + Q A+ E + + V R L L + Sbjct: 131 --LAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHM 188 Query: 227 SAFGVQSRYGFIFNDLGVKPA 247 FG S + I ++ G+ A Sbjct: 189 LVFGPNSLFQEILDEYGIPNA 209
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 37.6 bits (87), Expect = 2e-05 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 13/141 (9%) Query: 35 ITRERIADVSI----AIGLPNLTFVGVAAALGVSHMALYKHVPNIEALKCLVAEEIFQR- 89 + RE + D ++ G+ LT +A LG+ LY HV N AL +A EI R Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARH 63 Query: 90 --WQIPRADGNCVEGLQSYLTRFATSVQAFVKAHPGLTPYVIRRLAATEAMIDKINDHQA 147 + +P A E QS+L A S + + + + + + Q Sbjct: 64 HDYSLPAAG----ESWQSFLRNNAMSFRRALLRYRDGAKVHLGTRPDEKQYDTV--ETQL 117 Query: 148 HIAQAYGLSLEEARWLLSTVA 168 G SL + + +S V+ Sbjct: 118 RFMTENGFSLRDGLYAISAVS 138
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 39.7 bits (93), Expect = 1e-05 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 25/108 (23%) Query: 57 RQMLEQVRPEAVIVANPNTLHVATAL--DCVEAGVPVLVEKPVGVNLDEVRALVEASRRR 114 R M E V+ +V+VANP H+A + E +P++ K + +V+ + + + Sbjct: 248 RNMRENVKRSSVVVANPT--HIAIGILYKRGETPLPLVTFK--YTDA-QVQTVRKIAEEE 302 Query: 115 GVPVLVGHHRRHNPLIAKAHQVINEGKLGRLINVTALWQLQKPDSYFE 162 GVP+L PL A + + + I P E Sbjct: 303 GVPILQRI-----PL---ARALYWDALVDHYI----------PAEQIE 332
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 2e-05 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 3/156 (1%) Query: 80 FATTLNYIDRAALGIMQPVLAKEMSWTAMDYANINFWFQVGYAIGFLLQGRLIDKVGVKR 139 + + ++ L + P +A + + +N F + ++IG + G+L D++G+KR Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 140 AFFFAVLLWSLATGAHGLATSAAGFMV-CRFILGLTEAANYPACVKTVRLWF-PAGERAI 197 F +++ + + S ++ RFI G AA +PA V V + P R Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGK 139 Query: 198 ATGLFNAGTNVGAMVTPALLPLILAVWGWQAAFIAM 233 A GL + +G V PA+ +I W + Sbjct: 140 AFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP 175
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.1 bits (83), Expect = 2e-05 Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 31/123 (25%) Query: 34 GIETFTQVSAPQAFAERMQGDNLML--------ACFV---EGAIAGLIELKEG------- 75 G+ T+T+ + + ++ + D++ + A F+ E G I+++ Sbjct: 33 GVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALI 92 Query: 76 RHIAMLFIAPGLQRQGIGKRLMNAALEHASA--------EVVTVKASLSSVPAYQRYGFT 127 IA +A +++G+G L++ A+E A E + ++S+ Y ++ F Sbjct: 93 EDIA---VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDI--NISACHFYAKHHFI 147 Query: 128 LAG 130 + Sbjct: 148 IGA 150
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.005 Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 21/213 (9%) Query: 284 AAATALNAVTEESANNLRQQGQELEQAATAVTEMTTAVEEVARNAITTSQTTSE---SNQ 340 A N N + Q G E ++ T T+ T VE+ + + T +T ++Q Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 341 LAAQSRRQVSENIDGTEAMTREIQTSSAHLQQLVGQVRDIGKVLEVIRS-----VSEQTN 395 ++ + + + A + + Q D + + S V+E T Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 396 LLALNAAIE-------AARAGEAGRGFAVVADEVRTLAYRTQQSTQEIEQMIGSVQAGTE 448 + N+ +E A + + R+ E S T Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVE-PATTSSNDRSTV 1247 Query: 449 AAVASMQASTNRAQS-----TLDVTLASGQVLE 476 A +TN S V L G+ + Sbjct: 1248 ALCDLTSTNTNAVLSDARAKAQFVALNVGKAVS 1280
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.6 bits (69), Expect = 0.011 Identities = 60/278 (21%), Positives = 98/278 (35%), Gaps = 20/278 (7%) Query: 62 GLMVTLPGIMAALAAPLISVGVGALDRRYLLIGLTLIMIIANAIVAYAGDFNLLLVGRVL 121 G+++ L +M AP++ RR +L+ + AI+A A +L +GR++ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 122 LGISIGGFWATAIALSGRLAPDGMGVAKANSIIMAGVTLATVVGVPVGTWLSGLMGWRMT 181 GI+ G A A A + G A+ + A V G +G + G Sbjct: 106 AGIT-GATGAVAGAYIADITD-GDERARHFGFMSACFGFGMVAGPVLGGLMGGF-SPHAP 162 Query: 182 FLVTALVGVPVLLAQVFLLPRLMPEKAIRIRDLPALFINPQARVGLIAVLLIGLAHFAAY 241 F A + L FLLP K R R L +NP A + + A A + Sbjct: 163 FFAAAALNGLNFLTGCFLLPE--SHKGER-RPLRREALNPLASFRWARGMTVVAALMAVF 219 Query: 242 -----------TYVAPFFKQNAGFDGPTIGSLLLLYGVAG-FMGNIFAGFAANRSVRHTL 289 F + +D TIG L +G+ + G A R Sbjct: 220 FIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRA 279 Query: 290 MLVALMIAVSTALFPHFATGMTGAAMLIALWGFAFGAF 327 +++ ++ + + FAT G + A G Sbjct: 280 LMLGMIADGTGYILLAFAT--RGWMAFPIMVLLASGGI 315
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 42.2 bits (99), Expect = 9e-07 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 139 PAAGLLMALPALLLVAFMLSALGLLLSNAIRQLENFAGVMNFVIFPLFFLSSALYPLWKM 198 LL ALP + L ++LG++++ + F VI P+ FLS A++P+ ++ Sbjct: 143 QWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQL 202 Query: 199 REASQWLYWLCAVNPFTHAVELVRFALYER----LNLLALAVCLGLTALFTLLAIL 250 Q P +H+++L+R + + A+C+ + F L L Sbjct: 203 PIVFQTAARFL---PLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTAL 255
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (282), Expect = 7e-32 Identities = 75/253 (29%), Positives = 114/253 (45%), Gaps = 13/253 (5%) Query: 40 LAGKIALITGADSGIGRAVAIAYAREGADVAIAYLNEHDDAQETARWVKAAGRQCLLLPG 99 + GKIA ITGA GIG AVA A +GA +A N + ++ +KA R P Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNP-EKLEKVVSSLKAEARHAEAFPA 64 Query: 100 DLAQKQHCHDIVDKTVAQFGRIDILVNNAAFQMAHESLDDIDDDEWVKTFDTNITAIFRI 159 D+ +I + + G IDILVN A + + + D+EW TF N T +F Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 160 CQRALPSMP--KGGSIINTSSVNSDDPSPSLLAYAATKGAIANFTAGLAQLLGKQGIRVN 217 + M + GSI+ S + P S+ AYA++K A FT L L + IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 218 SVAPGPI-----WTPLIPATMPDEAVRNFGS----GYPMGRPGQPVEVAPIYVLLGSDEA 268 V+PG W+ ++ ++ G P+ + +P ++A + L S +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 269 SYISGSRYAVTGG 281 +I+ V GG Sbjct: 244 GHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 51.2 bits (122), Expect = 9e-10 Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 38/247 (15%) Query: 12 NVLVCGASQGIGLALCTQLLARDDIGLVFAVSRRATTSPALDTLFTEHARRLVRLDCDAR 71 + GA+QGIG A+ L ++ + AV + + AR D R Sbjct: 10 IAFITGAAQGIGEAVARTLASQG--AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 72 SEQALQTLAAQVGACCDQLNLVFSTLGVLQEGPARAEKALTQLDMAGLLSSFTTNCFAPV 131 A+ + A++ ++++ + GVL+ G + L ++F+ N Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGL------IHSLSDEEWEATFSVNSTGVF 121 Query: 132 LLLKHLLPLLRRHPMAFVALSARVGSIGDNHLG----GWYSYRASKAALNQLLRTASIEL 187 + + + S + ++G N G +Y +SKAA + +EL Sbjct: 122 NASRSVSKYMMDRR------SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 188 KRLNPASTVLALHPGTTDTQLSRP------------------FQGNVPPGKLFSPAFAAT 229 N +++ PG+T+T + F+ +P KL P+ A Sbjct: 176 AEYNIRCNIVS--PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 230 CILALVS 236 +L LVS Sbjct: 234 AVLFLVS 240
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (341), Expect = 4e-41 Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 12/249 (4%) Query: 4 KIAVVTGGSRGIGKSIVLALAGAGYQVAFSYVRDEASAAALQAQVEGLGRDCLAVQCDVK 63 KIA +TG ++GIG+++ LA G +A E + + + R A DV+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL-KAEARHAEAFPADVR 67 Query: 64 EAPSIQAFFERVEQRFERIDLLVNNAGITRDGLLATQSLNDITEVIQTNLVGTLLCCQQV 123 ++ +I R+E+ ID+LVN AG+ R GL+ + S + N G + V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 124 LPCMMRQRSGCIVNLSSVAAQKPGKGQSNYAAAKGGVEALTRALAVELAPRNIRVNAVAP 183 MM +RSG IV + S A P + YA++K T+ L +ELA NIR N V+P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 184 GIVSTDMSQAL---VGAHEQEI-----QSRLLI--KRFARPEEIADAVLYLA-ERGLYIT 232 G TDM +L EQ I + I K+ A+P +IADAVL+L + +IT Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 233 GEVLSVNGG 241 L V+GG Sbjct: 248 MHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 96.3 bits (239), Expect = 5e-26 Identities = 76/258 (29%), Positives = 114/258 (44%), Gaps = 13/258 (5%) Query: 5 RTIVITGAANGIGRAVAESFAAQAEHLLILLDRDLATLQGWVTEGEFAARIETHQANIAD 64 + ITGAA GIG AVA + A+Q H+ + + + A E A++ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 LASLQLLFKGLADRVGFVDVLVNSAGVCDENEPEDL--DNWHKVISINLNGTFYVTSLCL 122 A++ + + +G +D+LVN AGV L + W S+N G F + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 123 PLMAD--GGRIVNMSSILGRAGKVRNTAYCASKHGIIGMTKALALDLAPRRITVNAILPA 180 M D G IV + S + AY +SK + TK L L+LA I N + P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 181 WIDTPMLQ----GELAAQARIAGITHEQILRNAKKKLPLRRFIQGDEVAAMVRYLASPQA 236 +T M E A+ I G L K +PL++ + ++A V +L S QA Sbjct: 189 STETDMQWSLWADENGAEQVIKGS-----LETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 237 SGVTAQSLMIDGGAGLGM 254 +T +L +DGGA LG+ Sbjct: 244 GHITMHNLCVDGGATLGV 261
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 54.8 bits (132), Expect = 1e-09 Identities = 46/343 (13%), Positives = 114/343 (33%), Gaps = 38/343 (11%) Query: 171 EMASMADLENISLSADGELWIHKTLHALDMDPIKVE--AQIMGNEQMVGGVVSADKK--V 226 + + ++L + D ++++ A++ + + + K Sbjct: 239 RFKNPEEFGKVTLRVNS-----------DGSVVRLKDVARVELGGENYNVIARINGKPAA 287 Query: 227 AMVVAELGTKQDDAQAQLRAYHQVREIIAKYQAAHPEFTDEVFIAGMPIFIAAQQEIIDH 286 + + A A L ++ +A+ Q P+ ++ F+ + Sbjct: 288 GLGIK----LATGANA-LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 342 Query: 287 DLAMLFPIVFLLVTSLLVFFFRKPLGVVLPLFNILFCTIWTLGLMALLRVPMDLLTSVLP 346 L +VFL++ F + ++P + + T ++A ++ LT Sbjct: 343 TLFEAIMLVFLVM----YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM 398 Query: 347 VFLFTICCADAIHVMAEYYEQLNSGKS-FREANRETQRLMVTPVVLTTVTTIATFL-IST 404 V + DAI V+ + K +EA ++ + +V + A F+ ++ Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 405 TNNIVSI--RNFGVFMSIGLTAALIISLLLIPAWISIWGKDAVPRKVQLKESLISHYLVV 462 R F + + + +++++L+L PA + K + K + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTT 518 Query: 463 F----------CAWLIRWRKPVLLVTLPLLAMMTVFTFKVDIE 495 F ++ LL+ ++A M V ++ Sbjct: 519 FDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSS 561 Score = 52.9 bits (127), Expect = 5e-09 Identities = 36/203 (17%), Positives = 88/203 (43%), Gaps = 18/203 (8%) Query: 670 PANLQVTHAGTPYIWTGVLQEITQGQVLSFSLALLAVTLMMMFWLKSVRLGILGMLTLLT 729 P ++V PY T +Q V + A++ V L+M +L+++R ++ + + Sbjct: 318 PQGMKVL---YPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPV 374 Query: 730 TSVTVYGSMYLLDIELNIGTTLVTFLVVG-VVDYAVHLLSRI-KMLVQKGIEIDEAILAA 787 + + + +N T L +G +VD A+ ++ + +++++ + EA + Sbjct: 375 VLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKS 434 Query: 788 MQGVGRSTVVNVVIFSMGFVALLFSA------YKPVIDLGVLVILALSSSGFMTILLVTL 841 M + + V ++ S F+ + F Y+ + ++ A++ S + ++L Sbjct: 435 MSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ---FSITIVSAMALSVLVALILT-- 489 Query: 842 ISPWFFASIVPQPAVQEGEQPGG 864 P A+++ + + E GG Sbjct: 490 --PALCATLLKPVSAEHHENKGG 510 Score = 49.8 bits (119), Expect = 4e-08 Identities = 36/199 (18%), Positives = 82/199 (41%), Gaps = 19/199 (9%) Query: 649 SVAGDYQAMLDKLDAWLAINKPANLQVTHAGTPYIWTGVLQEITQGQVLSFSLALLAVTL 708 + +GD A+++ L + L PA + G Y + +++ + V L Sbjct: 834 TSSGDAMALMENLASKL----PAGIGYDWTGMSY----QERLSGNQAPALVAISFVVVFL 885 Query: 709 MMMFWLKSVRLGILGMLTLLTTSVTVYGSMYLLDIELNIGTTLVTFLVVGVVDY-AVHLL 767 + +S + + ML + V V + L + + ++ + +G+ A+ ++ Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 768 SRIK-MLVQKGIEIDEAILAAMQGVGRSTVVNVVIFSMGFVALLFS------AYKPVIDL 820 K ++ ++G + EA L A++ R ++ + F +G + L S A + Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA---V 1002 Query: 821 GVLVILALSSSGFMTILLV 839 G+ V+ + S+ + I V Sbjct: 1003 GIGVMGGMVSATLLAIFFV 1021 Score = 49.5 bits (118), Expect = 6e-08 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 6/153 (3%) Query: 288 LAMLFPIVFLLVTSLLVFFFRKPLGVVLPLFNILFCTIWTLGLMALLRVPMDLLTSVLPV 347 L I F++V L + V + + + L L D+ V + Sbjct: 872 APALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLL 931 Query: 348 FLFTICCADAIHVMAEYYEQL--NSGKSFREANRETQRLMVTPVVLTTVTTIATFL---I 402 + +AI ++ E+ + L GK EA R+ + P+++T++ I L I Sbjct: 932 TTIGLSAKNAI-LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAI 990 Query: 403 STTNNIVSIRNFGVFMSIGLTAALIISLLLIPA 435 S + G+ + G+ +A ++++ +P Sbjct: 991 SNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPV 1023
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 335 bits (861), Expect = e-110 Identities = 134/364 (36%), Positives = 193/364 (53%), Gaps = 24/364 (6%) Query: 304 ITVVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKRFATSHSTILITGESG 363 I ++ RA + L G S A +E+ ++ R + T++ITGESG Sbjct: 112 IGIIGRALAEPKRRPSKLE-DDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170 Query: 364 TGKELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEA 423 TGKEL+A+ +H+ RR GPFVAIN AA P L+ESELFG+E+GAF+G+ + G FE Sbjct: 171 TGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGA-QTRSTGRFEQ 229 Query: 424 AHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDD 483 A GTLFLDEIGDMP+ QTRLLRVLQ+ E +G PI DVRI+AAT+KDL+ +++ Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQ 289 Query: 484 GDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQPPGAADIPAALLPYLE 543 G FR DLY+RLN++ L+ PLR+R EDI + R Q+ +G L ++ Sbjct: 290 GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDV--KRFDQEALELMK 347 Query: 544 RYAWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLPELCEGPPPSPARKKS---- 599 + WPGNVRELEN++ R + + + E L +P+ + + S Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 600 ----------------SGETDLHTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTTLW 643 + + + L + RGN +AA LG++R TL Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 644 RRLR 647 +++R Sbjct: 468 KKIR 471
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (280), Expect = 5e-32 Identities = 72/253 (28%), Positives = 123/253 (48%), Gaps = 14/253 (5%) Query: 10 ALDGRRALVTGASSGLGRHFAMTLAAAGAEVVVTARRQAPLQALVEAIEVAGGRAQAFAL 69 ++G+ A +TGA+ G+G A TLA+ GA + L+ +V +++ A+AF Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 70 DVTS----REDICRVLDAAGPLDVLVNNAGVSDSQPLLACDDQTWDHVLDTNLKGAWAVA 125 DV E R+ GP+D+LVN AGV + + D+ W+ N G + + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 126 QESARRMVVAGKGGSLINVTSILASRVAGAVGPYLAAKAGLAHLTRAMALELARHGIRVN 185 + ++ M+ + GS++ V S A ++ Y ++KA T+ + LELA + IR N Sbjct: 125 RSVSKYMM-DRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 186 ALAPGYVMTDLNEAFLASEAGDKLRSR---------IPSRRFSVPSDLDGALLLLASDAG 236 ++PG TD+ + A E G + + IP ++ + PSD+ A+L L S Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 237 RAMSGAEIVVDGG 249 ++ + VDGG Sbjct: 244 GHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.9 bits (101), Expect = 2e-06 Identities = 31/181 (17%), Positives = 72/181 (39%), Gaps = 4/181 (2%) Query: 12 VVFLLLIGIVNYLDRSALSIANTSIQKDMMISPSQMGILLSAFSIAYAFAQLPMGMIIDR 71 +++L ++ + L+ L+++ I D P+ + +AF + ++ G + D+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 72 LGSK--IALGASLLGWSVAQAAFGMVNSFAGFMGLRVLLGIGEAPMFPSAAKALSEWFDA 129 LG K + G + + G + F+ + R + G G A ++ + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGH-SFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 130 NERGTPTGVVWSSTCLGPCLAPPLLTLFMVNFGWRGMFIITGVIGVVLALCWLTFYKSKA 189 RG G++ S +G + P + + W + +I +I ++ + K + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP-MITIITVPFLMKLLKKEV 193 Query: 190 R 190 R Sbjct: 194 R 194
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1062 bits (2748), Expect = 0.0 Identities = 404/566 (71%), Positives = 471/566 (83%), Gaps = 2/566 (0%) Query: 4 ISRQAYADMFGPTVGDRVRLADTALWVEVEKDFTIYGEEVKFGGGKVIRDGMGQGQML-A 62 +SR AYA+MFGPTVGD+VRLADT L++EVEKDFT +GEEVKFGGGKVIRDGMGQ Q+ Sbjct: 5 MSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTRE 64 Query: 63 AEAMDLVLTNALIIDHWGIVKADIGIKHGRIAVIGKAGNPDVQPGVNVPVGPGTEVIAAE 122 A+D V+TNALI+DHWGIVKADIG+K GRIA IGKAGNPD+QPGV + VGPGTEVIA E Sbjct: 65 GGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGE 124 Query: 123 GKIVTAGGVDSHIHFICPQQVDEALNSGVTTFIGGGTGPATGTNATTCTPGPWYLARMLQ 182 GKIVTAGG+DSHIHFICPQQ++EAL SG+T +GGGTGPA GT ATTCTPGPW++ARM++ Sbjct: 125 GKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMIE 184 Query: 183 AADSLPINIGLLGKGNASRPDALREQIAAGAVGLKLHEDWGSTPAAIDCCLGVAEEMDIQ 242 AAD+ P+N+ GKGNAS P AL E + GA LKLHEDWG+TPAAIDCCL VA+E D+Q Sbjct: 185 AADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDVQ 244 Query: 243 VAIHTDTLNESGCIEDTLAAIGDRTIHTFHTEGAGGGHAPDIIRAAGQANVLPSSTNPTL 302 V IHTDTLNESG +EDT+AAI RTIH +HTEGAGGGHAPDIIR GQ NV+PSSTNPT Sbjct: 245 VMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPTR 304 Query: 303 PYTINTVDEHLDMLMVCHHLDPSIAEDVAFAESRIRRETIAAEDILHDMGAFAMTSSDSQ 362 PYT+NT+ EHLDMLMVCHHL P+I ED+AFAESRIR+ETIAAEDILHD+GAF++ SSDSQ Sbjct: 305 PYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDSQ 364 Query: 363 AMGRVGEVVLRTWQVAHQMKLRRGPLAPDTPYSDNFRVKRYIAKYTINPALTHGIGHEVG 422 AMGRVGEV +RTWQ A +MK +RG L +T +DNFRVKRYIAKYTINPA+ HG+ HE+G Sbjct: 365 AMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEIG 424 Query: 423 SVEVGKLADLVLWSPAFFAVKPALVLKGGMIVTAPMGDINGSIPTPQPVHYRPMFGALGA 482 S+EVGK ADLVLW+PAFF VKP +VL GG I APMGD N SIPTPQPVHYRPMFGA G Sbjct: 425 SLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYGR 484 Query: 483 ARHATRMTFLPQAAMDRGLAEELNLRSLIGVVNGCR-RVRKPDMVHNTLQPLIEVDAQTY 541 +R + +TF+ QA++D GLA L + + V R + K M+HN+L P IEVD +TY Sbjct: 485 SRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPETY 544 Query: 542 QVRADGELLVCEPASELPLAQRYFLF 567 +VRADGELL CEPA+ LP+AQRYFLF Sbjct: 545 EVRADGELLTCEPATVLPMAQRYFLF 570
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 2e-10 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 17/186 (9%) Query: 1 MRYSNEHKQQTRERLLASSGALAKRGGFASTGVAGLMKAIGLTGGAFYNHFPSKDDLFTE 60 R + + Q+TR+ +L + L + G +ST + + KA G+T GA Y HF K DLF+E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 VVRQELSNSPLARLASKGA----NRERLGRCLQQYLSLVHLRNAEGGCPLPPLGVEIARA 116 + SN L + L L L Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 117 DTPVREVAEHWLVELHRAWSTTL-------------EDEQLAWVLISQCVGALLVGRMLA 163 + V + A+ L + A +++ + L+ + A Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 164 SESVQA 169 +S Sbjct: 182 PQSFDL 187
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.7 bits (170), Expect = 2e-16 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 15/231 (6%) Query: 6 KVVLVIGAGDATGGEIAKRFAREGYIACVTRRQADKLQPLLEEIHAAGGQAYGFGSDARK 65 K+ + GA G +A+ A +G +KL+ ++ + A A F +D R Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 66 EEEVAELVETIERDIGPIEAFVFNIGANVPCSILEETPRKYFKIWEMACFAGFLTAQAVA 125 + E+ IER++GPI+ V G P I + ++ + + F +++V+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 126 RRMVQRERGTILFTGATAGTRGAAGFAAFAGAKHGLRALAQSMARELGPRNIHVAHVVVD 185 + M+ R G+I+ G+ AA+A +K + + EL NI ++V Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR-CNIVSP 187 Query: 186 GAIDTAFIRDSFPERYALKDQ--------------DGILDPAHIADSYWFL 222 G+ +T + + + + P+ IAD+ FL Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 93.7 bits (233), Expect = 3e-23 Identities = 83/337 (24%), Positives = 125/337 (37%), Gaps = 37/337 (10%) Query: 62 GAAVTVAGVVWVLLARPWGRAADRLGRRRILLLGSAGFTLAYWLLCLFVEGALRWMPGAT 121 G + + ++ A G +DR GRR +LL+ AG + Y + W+ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI---MATAPFLWV---- 98 Query: 122 LAFIGLMIARGCIGAFYAAIPVGYNALIADHVEPQRRARAMASLGAANAVGLVVGPALAA 181 +IG ++A G GA A A IAD + RAR + A G+V GP L Sbjct: 99 -LYIGRIVA-GITGATGAVA----GAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG 152 Query: 182 LLARHSLSLPFHIMSLLPATAFLVLFFTLKPQALPHSHAPSPVRLNDP---------RLR 232 L+ S PF + L FL F L H P+R R Sbjct: 153 LMGGFSPHAPFFAAAALNGLNFLTGCFLLPE---SHKGERRPLRREALNPLASFRWARGM 209 Query: 233 RP----LLVAFSAMLSVTVSQIIVGFFALDRLHLGPAEAAQAAGIALTTVGVALMLAQVI 288 + V F L V + F DR H GI+L G+ LAQ + Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT----TIGISLAAFGILHSLAQAM 265 Query: 289 LRQL---EWPPLKMIRVGATVSALGFACGSLATTAPWLWACYFVAAAGMGFVFPAFSALA 345 + + + +G G+ + AT + + A+G G PA A+ Sbjct: 266 ITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAML 324 Query: 346 ANAMQASEQGATAGSIGAAQGMGAVIGPLAGTLVYAL 382 + + QG GS+ A + +++GPL T +YA Sbjct: 325 SRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Score = 37.1 bits (86), Expect = 1e-04 Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 271 AGIALTTVGVALMLAQVILRQLEWPPLKMIRVGATVSALGFACGSLATTAPWLWACYF-- 328 A AL A +L + R P L + GA V A TAP+LW Y Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA------TAPFLWVLYIGR 103 Query: 329 VAAAGMGFVFPAFSALAANAMQASEQGATAGSIGAAQGMGAVIGPLAGTLVYALDPRLPF 388 + A G A A+ E+ G + A G G V GP+ G L+ P PF Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF 163 Query: 389 LAVAVLLLL 397 A A L L Sbjct: 164 FAAAALNGL 172
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.3 bits (97), Expect = 4e-06 Identities = 80/369 (21%), Positives = 126/369 (34%), Gaps = 40/369 (10%) Query: 18 QILSIVFYTFIAFLCIGLPIAVLPSYVHDQLGFGAVIA--GVTIGLQYLATLLSRPFAGR 75 ++ I+ + + IGL + VLP + D + V A G+ + L L P G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 VADTLGGKQAIRFGLLGIAGCGVLTLLSAWTLTLPLLSLALLLGGRLLLGIAQGLIGVAT 135 ++D G + + L G A V + A L +L + GR++ GI VA Sbjct: 66 LSDRFGRRPVLLVSLAGAA---VDYAIMATAPFLWVLYI-----GRIVAGITGATGAVAG 117 Query: 136 LSWGISQVGPVHT-ARVISWNGIASYGAIAIGAPV--GVLAVDGLDFSVLGP-----ALL 187 I+ + AR + A +G + PV G++ FS P AL Sbjct: 118 AY--IADITDGDERARHFGFMS-ACFGFGMVAGPVLGGLMG----GFSPHAPFFAAAALN 170 Query: 188 VLATLALLVLRKRPDVVVVRGERL----PFWSAFGRVAPCGLGLTLAS------IGYGTL 237 L L L R R P S + +A +G Sbjct: 171 GLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPA 230 Query: 238 TTFVTLYYLERGWAGA--AWCLSAFGVCFIISRLLFVNAVNRFGGYNVAVAC-MATEVLG 294 +V W L+AFG+ +++ + V G A+ M + G Sbjct: 231 ALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG 290 Query: 295 LSLLWLAPSPPWALVGAGLTGFGLSLVYPALGVEAIKQVPSSSRGAGLGAYAVFFDMALA 354 LL A A L G + PAL +QV +G G+ A + + Sbjct: 291 YILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLT-S 348 Query: 355 IAGPVMGAV 363 I GP++ Sbjct: 349 IVGPLLFTA 357
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.017 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 7/38 (18%) Query: 352 GPNGIGKTTLLRTLVG-----EMTPDAGSVKWTDSAEV 384 G GIGK+TL+ TLVG + D G+ K DS E Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGK--DSYEQ 638
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 114 bits (286), Expect = 1e-29 Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 3/136 (2%) Query: 12 RPTVLLVDDEESILSSLRRLLRGQPYDVKLATSGEQALAQMAEGPVDLVMSDARMPGMDG 71 T+L+ DD+ +I + L + L YDV++ ++ +A G DLV++D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 72 ATLLAQINQHHPSTVRILLTGYADPSAIIKAVNDGQIHRYISKPWNDDELLMTLRQALEH 131 LL +I + P ++++ IKA G + Y+ KP++ EL+ + +AL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIGRALAE 121 Query: 132 QHSERERQRLELLARR 147 +R +LE ++ Sbjct: 122 P--KRRPSKLEDDSQD 135
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 32.4 bits (73), Expect = 0.003 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 10/92 (10%) Query: 125 ESLEEQGDAVITSAHEMGGDWR------VIEQRIAADVRY---RQAFEDAYPDAVTKDNI 175 ESL+E+ +A + GGDW + +++ ++DV+ ++ PD T Sbjct: 188 ESLKERQEAE-KNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDIATTTTD 246 Query: 176 LSALADYQRTLLTPGARFDRYLQGDTEALTLE 207 + L R LL F ++ GD E L +E Sbjct: 247 IQGLPPEARDLLDERGNFSKFTLGDMEMLDVE 278
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 4e-10 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 48/196 (24%) Query: 46 RILLIDDMPTIHEDFRKILAPARSQNSELDEMEGLLFGEQVKNERPVFELDSAYGGEEGL 105 IL+ DD I + L R +++ Sbjct: 5 TILVADDDAAIRTVLNQAL------------------------SRAGYDVRITSNAATLW 40 Query: 106 GLLKRALQASKPYALAFVDMRMPGGWDGAQTIEHLWEEDPLLQVVVCTAYSDY-SWDELL 164 + A+ L D+ MP + + + + P L V+V +A + + + + Sbjct: 41 RWI-----AAGDGDLVVTDVVMPDE-NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS 94 Query: 165 DRLQAHDRLLILKKPFDNIEVQQMASTLLTKWEMTQRASLKMHQLEQRVERRTQQLTQA- 223 A+D L KPFD E+ + RA + + ++E +Q Sbjct: 95 -EKGAYDYLP---KPFDLTELI----------GIIGRALAEPKRRPSKLEDDSQDGMPLV 140 Query: 224 --SEALQQEIEERKQL 237 S A+Q+ +L Sbjct: 141 GRSAAMQEIYRVLARL 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.034 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%) Query: 24 FSCRHPQTPWLPKVIAMIVIAYALS--PIDLIPDFIPV 59 F R P W+ +I M+ A A+ P+ P P Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPP 41
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 1e-04 Identities = 23/156 (14%), Positives = 58/156 (37%), Gaps = 4/156 (2%) Query: 63 PLSEQLANLVGQLADQLEEDAQATVAQEREQLQRERLDYQNQARLAESRIQQLESQSSGL 122 P + ++ L ++ +T ++ Q + + + +RI + E+ S Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 123 TEQLQAVQQALQQEQQQRQQTEVENARLAQANGDQEVRLQDRDSQIRSLEEKHQHARDAL 182 +L L ++ + + + +A + V SQ+ +E + A++ Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYK----SQLEQIESEILSAKEEY 289 Query: 183 EHYRQASKEQREQEQRRHESQVQQLQLELRQLQQTL 218 + Q K + + R+ + L LEL + ++ Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Score = 30.6 bits (69), Expect = 0.009 Identities = 23/193 (11%), Positives = 63/193 (32%), Gaps = 9/193 (4%) Query: 77 DQLEEDAQATVAQER-EQLQRERLDYQNQARLAESRIQQLESQSSGLTEQLQAVQQALQQ 135 L +A Q Q + E+ YQ +R E Q + ++ L+ Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 136 EQQQRQQTEVENARLAQANGDQEVRLQDRDSQIRSLEEKHQHARDALEHYRQASKEQREQ 195 ++Q + Q E+ L + ++ ++ + + + + Sbjct: 188 TSLIKEQFSTWQNQKYQK----ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243 Query: 196 EQRRH--ESQVQQLQLELRQLQQTLIIKQDELTQLNRDNARLLTEARQLQKEQHAQQQLL 253 ++ + V + + + + L + + +L Q+ L + Q + ++L Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIES--EILSAKEEYQLVTQLFKNEIL 301 Query: 254 AQKNQAMEALQSV 266 + Q + + + Sbjct: 302 DKLRQTTDNIGLL 314 Score = 29.4 bits (66), Expect = 0.019 Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 6/189 (3%) Query: 142 QTEVENARLAQANGDQEVRLQDRDSQIRSLEEKHQHARD--ALEHYRQASKEQREQEQRR 199 E + + + + RS+E +++ S+E+ + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 200 HESQVQQLQLELRQLQQTLIIKQDELTQLNRDNARLLTEARQLQKEQHAQQQLLAQK--- 256 + Q Q + Q + L K+ E + R +R + LL ++ Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 257 NQAMEALQSVLAGSERSNEALEQRCRTLQEEVSRLGEASATLAQQAQGLQ-ERLVEANTQ 315 A+ ++ + + + ++ E+ E + Q + ++L + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 316 LKLLRAPLA 324 + LL LA Sbjct: 311 IGLLTLELA 319
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 46.3 bits (110), Expect = 9e-08 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 12/127 (9%) Query: 13 VTGATGLLGNNLVRELVARGYTVKGL--------VRSKAKGEQQFNNLPGVELVVGDMAE 64 VTGA G +G ++ + L+ G+ V G+ V K + PG + D+A+ Sbjct: 5 VTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQ-PGFQFHKIDLAD 63 Query: 65 VDAFAA--SLQGCDTVFHTASFFRDNYKGGSHWKELEQINVSGTRRLLEQAYGAGIRRFI 122 + + + VF + Y + N++G +LE I+ + Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHA-YADSNLTGFLNILEGCRHNKIQHLL 122 Query: 123 HTSSIAV 129 + SS +V Sbjct: 123 YASSSSV 129
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.0 bits (189), Expect = 7e-19 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 2/185 (1%) Query: 7 VLITGASSGIGATYAERFARRGHDLILVARDTSRMEALALRLREESHVAVEVLPADLTSS 66 ITGA+ GIG A A +G + V + ++E + L+ E+ A E PAD+ S Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFPADVRDS 69 Query: 67 ADLSVLESRL-RDDANIGVLINNAGMAQSGGFLDQSAEAIERLVTLNTTALTRLAAAIAP 125 A + + +R+ R+ I +L+N AG+ + G S E E ++N+T + + +++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 126 RLAQSGTGAIVNVGSVVGFAPEFGMSIYGATKAFVLFLSQGLSQELSPKGVYVQAVLPAA 185 + +G+IV VGS P M+ Y ++KA + ++ L EL+ + V P + Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 186 TRTEI 190 T T++ Sbjct: 190 TETDM 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.5 bits (61), Expect = 0.030 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Query: 4 VMIIGQPGSGKSTLAR---KLGERTGLPVVHID 33 +MI G+ G+GK +AR G+R P V I+ Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAIN 195
>SECA#SecA protein signature. Length = 901 Score = 28.7 bits (64), Expect = 0.040 Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 165 ASRGKPGSVSAARAMKGRLKLVRMGGNLYFEIPANSQA 202 A G P +V+ A M GR + +GG+ E+ A Sbjct: 492 AQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENP 529
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 52.9 bits (126), Expect = 8e-09 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 11/87 (12%) Query: 1278 WSTARKNYWKAEAKAP--TRAYSPTNLVRMAEGKAPKMTVEVISRKTDKISIREYALELH 1335 W R+ +W A A P ++ ++P +L M +G AP R++++ R +E+H Sbjct: 532 WRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPY------VRESEQAGGRI-KIEIH 584 Query: 1336 HNDIPQRVGGAGVHDSSNLLALTPWEH 1362 H + GG GV++ NL+A+TP H Sbjct: 585 H-KVRVADGG-GVYNMGNLVAVTPKRH 609
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.009 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 55 VLVAEELARPKPDPLPYLTGLQRLGVEAGQALAFEDSLPGTAAASGAGIFTVGVATTQTP 114 L L P L +G+ RLG + + L L A + + A + P Sbjct: 108 ALQNARLKAPLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMS-HFAEAEHP 166 Query: 115 ERLLAAGARL 124 + + A AR+ Sbjct: 167 DGISGAMARI 176
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.0 bits (80), Expect = 3e-04 Identities = 30/250 (12%), Positives = 75/250 (30%), Gaps = 5/250 (2%) Query: 77 TQLQDEADLKIEQAESTFTQQREQLEAQLEIARQALAAAHQQHKIDAAALAAETEKLLST 136 + + + +E A + T +++ LE + ALAA + + + Sbjct: 119 EARKADLEKALEGAMNFSTADSAKIK-TLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 137 QSTLQAEQLRSASLNQSLGELQVRLADKDEQVKSLEDKHRHARDALEHYRNASREQREQE 196 TL+AE+ + L + + + + AL + + E Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEG- 236 Query: 197 QRRHEAQLQQMQVELRQLQQGMIVKQDELTRLHRDNERLLGEHRQAASECRAQDELLEQR 256 +++ L+ + L + E + +++ + + Sbjct: 237 ---AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 293 Query: 257 DAQIQGLRTILAQAQGASEEMRRQLDVQAQSLEARRDVCAEQARQLQWLEEQLKARDEAL 316 +A+ L + +RR LD ++ + + Q + E ++ L Sbjct: 294 EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353 Query: 317 AQCRAQLASV 326 R + Sbjct: 354 DASREAKKQL 363 Score = 30.0 bits (67), Expect = 0.014 Identities = 31/213 (14%), Positives = 77/213 (36%), Gaps = 1/213 (0%) Query: 78 QLQDEADLKIEQAESTFTQQREQLEAQLEIARQALAAAHQQHKIDAAALAAETEKLLSTQ 137 + T ++ L A+ +AL A D+A + + + + Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 138 STLQAEQLRSASLNQSLGELQVRLADKDEQVKSLEDKHRHARDALEHYRNASREQREQEQ 197 + + ++ + + +LE + + NA+R+ ++ Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQ-VLNANRQSLRRDL 318 Query: 198 RRHEAQLQQMQVELRQLQQGMIVKQDELTRLHRDNERLLGEHRQAASECRAQDELLEQRD 257 +Q++ E ++L++ + + L RD + +Q +E + +E + + Sbjct: 319 DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISE 378 Query: 258 AQIQGLRTILAQAQGASEEMRRQLDVQAQSLEA 290 A Q LR L ++ A +++ + L+ L A Sbjct: 379 ASRQSLRRDLDASREAKKQVEKALEEANSKLAA 411
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 0.001 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 77 LHLHEISVRQEAQGQGVGRRLLQQVVDAGRCAGVRELTL-TTFVDVPWNAPFYARFGFEM 135 + +I+V ++ + +GVG LL + ++ + L L T +++ FYA+ F + Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINIS-ACHFYAKHHFII 148
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 52.5 bits (126), Expect = 1e-09 Identities = 70/328 (21%), Positives = 117/328 (35%), Gaps = 21/328 (6%) Query: 21 AVIAGLLLFYLLFTGYFMLRPVRETMGVAGGVENLQWLFTGTFIATLA-----CLPLFGW 75 +I L L G ++ PV + N G +A A C P+ G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 LASRVQRRHILPWTYGFFASNLLLFAALLAGNPDDLWTARAFYIWLSVFNLLTISLAWSV 135 L+ R RR +L + A + + A A L+ R ++ T ++A + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMA--TAPFLWVLYIGRI----VAGITGATGAVAGAY 119 Query: 136 LADLFSTAQGKRLFGLLAAGASLGGLSGPVLGTLLVAPLGHAGLLVLAAVLLLGSIGATL 195 +AD+ + R FG ++A G ++GPVLG L+ HA AA+ L + Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 196 FLQRWRARQPIAMQTEHQGSRPLGGNPFTGASAVLRSPYLLGIALFVVLLASVSTFLYFE 255 L P + + E + R NP + +A + + + Sbjct: 180 LL-------PESHKGERRPLRREALNPLASFRWAR---GMTVVAALMAVFFIMQLVGQVP 229 Query: 256 QARIVSETFTDRTRQTQVFGLIDTVVQALAILTQVFLTGRLARRLGVGVLLVAVPLIMAA 315 A V G+ L L Q +TG +A RLG L+ + Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 316 GFLWLALAPVFALFVVVMVVRRAGEYAL 343 G++ LA A + +MV+ +G + Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGIGM 317
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.037 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 38/194 (19%) Query: 65 GDPL--LSRLVTEALGQNLQLAQAQARVAQARAALGSATAALVPSAGINGQAARSRQSVE 122 GD L L+ L EA Q + QAR+ Q R Q + Sbjct: 121 GDVLLKLTALGAEADTLKTQSSLLQARLEQTRY-----------------QILSRSIELN 163 Query: 123 TPLGQLLNSTPDYDRYGNSYELNLQASWEIDLFGGLRRDRQAAVGEYQASEAGAIATRLA 182 L P + L R ++ + L Sbjct: 164 KLPELKLPDEPYFQNVSEEEVL---------------RLTSLIKEQFSTWQNQKYQKELN 208 Query: 183 VAAQTADIYTTVRGLQARLAIAQNQVKTQQDLLAKVNLLNRKGLAPDYEVRQTEGELSQV 242 + + A+ + AR+ +N + ++ L + L K + V + E + + Sbjct: 209 LDKKRAERL----TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA 264 Query: 243 EATVPVLRAGLDAA 256 + V ++ L+ Sbjct: 265 VNELRVYKSQLEQI 278
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 8e-14 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 12/197 (6%) Query: 17 DVRDQIIQAAMEHFAHYGYDKTTVSDLAKSIGFSKAYIYKFFESKQAIGEVICSSRLALI 76 + R I+ A+ F+ G T++ ++AK+ G ++ IY F+ K + I + I Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 77 MQRIATATSDAPTASEKLRRLFRAIAEGGADLFFHDRKLYDIAAVASRDQ-----WSSVK 131 + + P + R I + + + + + + V+ Sbjct: 71 GELELEYQAKFP---GDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 132 SHEANIS----KVILEILTQGRDAGEFERKTPLDELTLAIFLIMRPYVNAALLQHNLDTL 187 + N+ I + L +A + + + + L L Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL 187 Query: 188 QDAVVQLPALILRSLAP 204 + A++L Sbjct: 188 KKEARDYVAILLEMYLL 204
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.8 bits (106), Expect = 3e-07 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 7/104 (6%) Query: 67 VSGKILQRLVDTGQTVKRGQPLMRMDPVDLN-----LQARAQQEAVTAARARAKQTG--D 119 + + + +V G++V++G L+++ + Q+ Q + R + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 120 DEARYRGLVADGAVSASSYDQIKAAADAAKAQLSAAQAQADVAR 163 ++ L + S +++ K Q S Q Q Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 449 bits (1157), Expect = e-143 Identities = 233/1045 (22%), Positives = 432/1045 (41%), Gaps = 59/1045 (5%) Query: 8 LSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQDL 67 ++ +R L +++ AG LA +L A+ P +++ +PGA AQ +QD Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 68 VAEPLEKRMQELRWYDRTETYT-RPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAKL 126 V + +E+ M + + + G ++ Q T P Q + + A L Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLA---TPL 117 Query: 127 MPAGVIGPML-NDEFSDVTFAVYALKA-KGEPQRQLVRD--AETLRQQLLHVPGVKKVNI 182 +P V + ++ S V + + + D A ++ L + GV V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 183 IGEQ-AERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVET------QGPQVVVR 235 G Q A RI++ D L +TP D+ + L QN +G + Q + Sbjct: 178 FGAQYAMRIWLDA--DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 236 VDGAFDQLAKIRETPVVAQ--GRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMR 293 F + + + G ++L DVA VE G E+ R +G+PA LGI + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVI-ARINGKPAAGLGIKLA 294 Query: 294 EGWNGLDLGKALEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLV 353 G N LD KA++A+ A++ P GM + D + S+ E + F A+++V LV Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 354 CFLSMG-WRVGVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIE 412 +L + R ++ AVP+ L F ++AA G + + +T+ ++LA+GLLVDDAI+ +E Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 413 MMV-VKMEEGYDRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIV 471 + V ME+ +A+ + S ++ +V + F+P F + G + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 472 GIALIASWVVAVAFTPYLGVKLL----PRIKTIEGGHAAIYNTRHY---NRFRALLGWVI 524 A+ S +VA+ TP L LL +GG +NT N + +G ++ Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 525 AHKWLVAGTVVSTFVAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVE 584 V+ + F P D+ L +Q+P G + E+T +V Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 585 SWLRQQEEAKIVTTYIGQGPPRFFLAMAPELPDPSFAKIVV--LTENQGARE---ALKHR 639 + + E+A + + + G + + + + A + + E G A+ HR Sbjct: 595 DYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHR 649 Query: 640 LREAASE-----GLAPGAQVRVTQLVFGPYSPYPVAYRVMGPDASQ--LRQIAARVQSVL 692 + + + V + + +G DA Q+ Sbjct: 650 AKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA--- 706 Query: 693 QASPMMKTVNTDWGPLVPTLHFSLNQDRLQSVGLTSASVSQQLQFLLTGVPITSVREDIR 752 Q + +V + ++Q++ Q++G++ + ++Q + L G + + R Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 753 SVQVVGRAAGQIRLDPAQIENFTLVGSNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTV 812 ++ +A + R+ P ++ + +NG+ VP S P L R + P+M + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 813 RGDIAEGLQPPDVSTAIWKDLQPIVTQLPAGYKIEMAGSIEESAKASQAIVPLLPIMIAL 872 +G+ A G D + + + ++LPAG + G + + L+ I + Sbjct: 827 QGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 873 TLLIIILQVRSISAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTL 932 L + S S V V L PLG++GV+ LF Q + +VGL+ G+ +N + Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 933 ILIGQIDHNQL-EGLAPFDAVVEATVQRARPVLLTALAAILAFIPLTHSVFWGT-----L 986 +++ EG +A + A R RP+L+T+LA IL +PL S G+ + Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAV 1002 Query: 987 AYTLIGGTFVGTIMTLVFLPAMYSI 1011 ++GG T++ + F+P + + Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVFFVV 1027 Score = 86.8 bits (215), Expect = 2e-19 Identities = 61/320 (19%), Positives = 130/320 (40%), Gaps = 14/320 (4%) Query: 712 LHFSLNQDRLQSVGLTSASVSQQLQF----LLTGVPITSVREDIRSVQVVGRAAGQIRLD 767 + L+ D L LT V QL+ + G + + + A + + + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK-N 242 Query: 768 PAQIENFTL-VGSNGQRVPVSQIGDVSIRMED-PILRRRDRTPTMTVRGDIAEGLQPPDV 825 P + TL V S+G V + + V + E+ ++ R + P + +A G D Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 826 STAIWKDLQPIVTQLPAGYKIEMAGSIEESAKAS-QAIVPLLPIMIALTLLIIILQVRSI 884 + AI L + P G K+ + S +V L I L L++ L ++++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 885 SAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLE 944 A ++ + P+ L+G +L FG + G++ G+L+ + ++++ ++ +E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 945 -GLAPFDAVVEATVQRARPVLLTALAAILAFIPL-----THSVFWGTLAYTLIGGTFVGT 998 L P +A ++ Q ++ A+ FIP+ + + + T++ + Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 999 IMTLVFLPAMYSIWFKIRPN 1018 ++ L+ PA+ + K Sbjct: 483 LVALILTPALCATLLKPVSA 502
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 73.8 bits (181), Expect = 2e-16 Identities = 74/399 (18%), Positives = 148/399 (37%), Gaps = 53/399 (13%) Query: 18 RANVLTAKVILLLAALAAISNLSTNIILPAFPEMARQLNVSSQELGLTLSSFFITFAFAQ 77 ++N+ ++++ L L+ S L+ ++ + P++A N ++F +TF+ Sbjct: 7 QSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGT 66 Query: 78 LLVGPLADRYGRKRLVVGGLMIFVVGTFWAA-NAATLDMLILGRVIQAIGVCAAAVLARA 136 + G L+D+ G KRL++ G++I G+ + +LI+ R IQ G A L Sbjct: 67 AVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMV 126 Query: 137 IARDLYEGENLARALSLTMIAAATAPGFSPLIGSMLNTTLGWRALFIAVGMSAILIALFY 196 + EN +A L A G P IG M+ + W L + +I + + Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI--PMITIITVPF 184 Query: 197 LRGIGETLPAHRRVTQSVPAILIAYG---------------------------------- 222 L + + + IL++ G Sbjct: 185 LMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVT 244 Query: 223 ------KLASNRLFILPALATSLLMSGLFASFAAAPSILMEGMGLSSLQVG--LYFAATV 274 L N F++ L ++ + + P ++ + LS+ ++G + F T+ Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 275 FVVFAAGLAAPRLAHRWGSRAITLSGLATACTAGALLLVGPSNPSLGWYSLSMVLFLWG- 333 V+ G L R G + + + + L + W+ +++F+ G Sbjct: 305 SVII-FGYIGGILVDRRGPLYVLN--IGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGG 361 Query: 334 -MGIANPLGTALTMTPFGKEAGLASALL---GFLTMAIG 368 + T ++ + +EAG +LL FL+ G Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTG 400
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.002 Identities = 40/186 (21%), Positives = 63/186 (33%), Gaps = 34/186 (18%) Query: 614 TVEEREKLLHLEQRLHER----------LVGQDEAVRAV-ADAVRLSRAGLREGSKPVAT 662 + + L +R + LVG+ A++ + RL + T Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD--------LT 162 Query: 663 FLFLGSTGVGKTELAKALAETIYGDESALLRIDMSEYGERHSVARLVGAPPGYVGYDEGG 722 + G +G GK +A+AL + + I+M+ + L G E G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKG 214 Query: 723 QLTEKVRRKPYSV-------LLLDEIEKAHADVYNILLQVFDDGRLTDGKGRVVDFTNTI 775 T R L LDEI D LL+V G T GR ++ Sbjct: 215 AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR 274 Query: 776 IIATSN 781 I+A +N Sbjct: 275 IVAATN 280
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 60.7 bits (147), Expect = 3e-12 Identities = 76/336 (22%), Positives = 126/336 (37%), Gaps = 15/336 (4%) Query: 15 IGLCFLVALLEGLDLQATGIAAPHMAKAFNLTPAMLGWVFSAGLLGLLPGALIGGWLADR 74 I LC L L+ ++ P +A FN PA WV +A +L G + G L+D+ Sbjct: 17 IWLCILS-FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 75 FGRKAILIVAVLLFGGFSLGTAHAQTYDSLLI-ARLMTGLGLGAALPILIALA-SEAAPE 132 G K +L+ +++ S+ ++ SLLI AR + G G AA P L+ + + P+ Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVVARYIPK 134 Query: 133 RLRSTAVSLTYCGVPLGGAVASLI-GMAGVGDGWRTVFYVGGIAPIVIAFVLMIWLKE-- 189 R A L V +G V I GM W + + I I + F++ + KE Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194 Query: 190 -SQAFRAQGVAKAGSEGVLAQLFGPQQASRTLLLWVACFFTLTVLYMLLNWLPSLLIGQG 248 F +G+ S G++ + S + L+ F + V ++ P + G G Sbjct: 195 IKGHFDIKGIILM-SVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLG 253 Query: 249 FSRPQAGAVQILFNLGGAAGSF--LTGRMMDRGFAGRAVLIAYAGMLASLAGLGLSSSFG 306 + P V + G F + MM I + + + G Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 307 LMLLAGFTAGYCAIGGQLVL----YALAPTLYSTQV 338 +L+ Y G L + L +T Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 318 bits (816), Expect = e-104 Identities = 130/370 (35%), Positives = 189/370 (51%), Gaps = 54/370 (14%) Query: 306 RALQLPRHG-RVTPSTPSSKPALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLL 364 RAL P+ L +S A+ + R+ + + L +++ Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI----------YRVLARLMQTDLTLMIT 166 Query: 365 GETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVG 424 GE+GTGKE+VARALH R + PFVA+N AAIP LIESELFG+ +GAFTG++ G Sbjct: 167 GESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-G 225 Query: 425 RLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKR 484 R QA GGTLFLDEIGDMP+ Q RLLRVLQ+ +G DV ++ AT++DLK+ Sbjct: 226 RFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQ 285 Query: 485 LVQEQHFREDLFYRVNGVSLRLPALRER-DDLAAIIQGLLDKADARGV---TLDPALTAL 540 + + FREDL+YR+N V LRLP LR+R +D+ +++ + +A+ G+ D L Sbjct: 286 SINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALEL 345 Query: 541 LEGFDWPGNIRQLEMVVRTALAMREDGEQVLTLDHLTDCLLDELASSAAPSG-------- 592 ++ WPGN+R+LE +VR A+ V+T + + + L E+ S Sbjct: 346 MKAHPWPGNVRELENLVRRLTALYPQD--VITREIIENELRSEIPDSPIEKAAARSGSLS 403 Query: 593 ----------------------------SLKDSELEQIRGALARHQGNVSAAAAALGISR 624 L + E I AL +GN AA LG++R Sbjct: 404 ISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNR 463 Query: 625 ATLYRKLKQL 634 TL +K+++L Sbjct: 464 NTLRKKIREL 473
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 66.4 bits (162), Expect = 4e-17 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 25/142 (17%) Query: 4 AMKRSKGFTLIELLVVMAIIATLMTIAMPRYFNSLESSREATLRQSLAVLREALDHYYGD 63 A + +GFTL+E++VV+ II L ++ +P + E + + + L ALD Y D Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 64 TGHYPDS---LEQLVEQRYL----RNTPVDPITER--SDAW----QLVPP---------- 100 HYP + LE LVE L N + +R +D W LV P Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 101 --PEGVAGGVADIKSGATGRAR 120 P+G G DI + + + Sbjct: 123 AGPDGEMGTEDDITNWGLSKKK 144
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 48.7 bits (116), Expect = 4e-10 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 15/113 (13%) Query: 1 MSARRRMQGFSLIEVVLTLALLGLLASMAAPLTETVVRRGKEQQLREALYQIRDAIDAYK 60 M A + +GF+L+E+++ + ++G+LAS+ P + +Q+ + + +A+D YK Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 61 RAFDAGYIEKRVDSSGYPPNLQVLVEGVRDVRSAKGAKFY----FLRRIPHDP 109 +D+ YP Q L V A Y +++R+P DP Sbjct: 61 -----------LDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADP 102
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 144 bits (364), Expect = 2e-38 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 29/321 (9%) Query: 303 DERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRILDLGLQWPNTFGV 362 + N L + D + E+++ D P+V++E + EV + L+LG+QW N Sbjct: 315 HGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAG 374 Query: 363 LSDDGN---------------------PVSVLDQLKGINSSRISIA-PAPQAKINA--QD 398 ++ N S+ L N + A Sbjct: 375 MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSS 434 Query: 399 KDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVGLKLEVQP 458 + LA+P I + +A ++GQ VP+++ + +T G I +V VG+KL+V+P Sbjct: 435 TKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQ--TTSGDNIFNTVERKTVGIKLKVKP 492 Query: 459 TVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQVLAGLVRND 518 ++ + V +++ EVS+ ++ + +TR ++ + GET V+ GL+ Sbjct: 493 QINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKS 552 Query: 519 HNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNL-PYQSPSDMEFSTGT 577 + + +K+P LGDIP +G LF S +SK L+L I P ++R+ Y+ S +++ Sbjct: 553 VSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYT--A 610 Query: 578 ESAMQVRQMAPLPPMDVPGNA 598 + Q +Q + Sbjct: 611 FNDAQSKQRGKENNDAMLNQD 631
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 3e-18 Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Query: 3 RVLVVDDEQTLAQNLQAYLQAQGLEVHVAHDGASGIEQAESLAPQVVVLDYRLPDMEGFQ 62 +LV DD+ + L L G +V + + A+ + +VV D +PD F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VLEAVRKNR-QCHFVLITAHPTVEVRERAAELGVSHVLFKPFPLMELARAIFDLLGIERR 121 +L ++K R ++++A T +A+E G L KPF L EL I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 RRA 124 R + Sbjct: 125 RPS 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 401 bits (1031), Expect = e-139 Identities = 148/379 (39%), Positives = 196/379 (51%), Gaps = 36/379 (9%) Query: 98 FDFHTLPFDVSRVQVTLGRAFGMARLRGKGAVKVDEATHELLGESRPIRELRKLLGKLAP 157 +D+ PFD++ + +GRA + R + L+G S ++E+ ++L +L Sbjct: 99 YDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQ 158 Query: 158 TESPVLIRGESGTGKELVARTLHRQSQRSEQPFIAINCGAIPEHLIQSELFGHEKGAFTG 217 T+ ++I GESGTGKELVAR LH +R PF+AIN AIP LI+SELFGHEKGAFTG Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTG 218 Query: 218 AHQRKTGRIEAADGGTLFLDEIGDLPLELQANLLRFLQEKHIERVGGSQPIPVDVRVLAA 277 A R TGR E A+GGTLFLDEIGD+P++ Q LLR LQ+ VGG PI DVR++AA Sbjct: 219 AQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAA 278 Query: 278 THVDLERAIEQGRFREDLYYRLNVLQVVTAPLRDRHGDLSMLANHFAHFYSVETGRRPRS 337 T+ DL+++I QG FREDLYYRLNV+ + PLRDR D+ L HF E G + Sbjct: 279 TNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKR 337 Query: 338 FSDHALAAMGRHDWPGNVRELANRVRRGLVLAEGRQIEAQDLGLQLLD------------ 385 F AL M H WPGNVREL N VRR L I + + +L Sbjct: 338 FDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAA 397 Query: 386 -----------------------PEQQPLGTLEEYKQRAERQALCDVLNRHSDNLSVAAK 422 P G + E + L N AA Sbjct: 398 RSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAAD 457 Query: 423 VLGISRPTFYRLLHKHQIR 441 +LG++R T + + + + Sbjct: 458 LLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 1e-07 Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 24/149 (16%) Query: 34 VLIEGPRGMAKSTLARGLADL--LGEGPFVTLPLGASEERLVGTLDLDAAL-GQGKAQFS 90 ++I G G K +AR L D GPFV + + A L +++ L G K F+ Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDL-----IESELFGHEKGAFT 217 Query: 91 ------PGVLAQADGGVLYVDEVNLLPDTLVDLLLDVAASGTNRIERDGISHRHSARFVL 144 G QA+GG L++DE+ +P LL V G G + + Sbjct: 218 GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRI 275 Query: 145 IGTMNP------EEGELRPQLLDRFGLNV 167 + N +G R L R LNV Sbjct: 276 VAATNKDLKQSINQGLFREDLYYR--LNV 302
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 27.1 bits (60), Expect = 0.022 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 10/44 (22%) Query: 51 AWLIAGALVFCGLALLFALANL----------IRAERKGGRATL 84 AW++AG A + A+A L I +R G A++ Sbjct: 35 AWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASI 78
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 29.1 bits (65), Expect = 0.024 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 18/114 (15%) Query: 21 AFGLWGINDMGLVCGNSYFID-----GDDW-SELRSFMVVSQSEDYISVFDIDGN----- 69 A+ W ++ L Y D +DW S R + + D+I+ F +G Sbjct: 55 AYCSWA--NLSLENEIKYLNDVTSLVAEDWTSGDRKWFI-----DWIAPFGDNGALYKYM 107 Query: 70 AQELPREVLPSLRLHPISYDRSSKKFKAYKFVQDVASSLIRQYEQVGICELIEK 123 ++ P E+ ++R+ P ++ +F K + +A+ + +QY I E+ K Sbjct: 108 RKKFPDELFRAIRVDPKTHVGKVSEFHGGKIDKQLANKIFKQYHHELITEVKRK 161
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 210 bits (535), Expect = 1e-66 Identities = 102/344 (29%), Positives = 158/344 (45%), Gaps = 35/344 (10%) Query: 44 AWVEVSASALQHNIRTLQAELAGKSKLCAVLKADAYGHGIGLVMPSIIAQGVPCVAVASN 103 + AL+ N+ ++ + A +++ +V+KA+AYGHGI + +I A A+ + Sbjct: 5 IQASLDLQALKQNLSIVR-QAATHARVWSVVKANAYGHGIERIWSAIGATD--GFALLNL 61 Query: 104 EEARVVRASGFTGQ-LVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIA-ARHGKTL 161 EEA +R G+ G L+ +LE Q+ + V S Q A+ AR L Sbjct: 62 EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNW---QLKALQNARLKAPL 118 Query: 162 RIHMALNSSGMSRNGVE----MATWSGRGEALQITDQKHLKLVALMTHFA-VEDKDDVRK 216 I++ +NS GM+R G + + W Q+ ++ + LM+HFA E D + Sbjct: 119 DIYLKVNS-GMNRLGFQPDRVLTVWQ------QLRAMANVGEMTLMSHFAEAEHPDGISG 171 Query: 217 GLAAFNEQTDWLIKHARLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFGDT------ 270 +A + + L + +NS ATL PEA D VR G L+G + Sbjct: 172 AMARIEQAAEGL---------ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWR 222 Query: 271 VPARTEYKRAMQFKSHVAAVHSYPAGNTVGYDRTFTLARDSRLANITVGYSDGYRRVFTN 330 A T + M S + V + AG VGY +T + R+ + GY+DGY R Sbjct: 223 DIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPT 282 Query: 331 KGHVLINGHRVPVVGKVSMNTLMVDVTDFPDVKGGNEVVLFGKQ 374 VL++G R VG VSM+ L VD+T P G V L+GK+ Sbjct: 283 GTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKE 326
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.8 bits (150), Expect = 5e-12 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 514 ILVVEDVALNREVAGGLLMRDGHRVSFAEDASQALQACAQRRFDLVLLDVHLPGMSGVAL 573 ILV +D A R V L R G+ V +A+ + A DLV+ DV +P + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 574 CRQLRSSPGPNRHSRILALTAGVQPGQVAGYLDAGMQGVLAKPLRLDSLRKALA 627 +++ +L ++A + G L KP L L + Sbjct: 66 LPRIKK---ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 100 bits (250), Expect = 2e-26 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 3 PRVLIVDDDPLVRDLLQAYLSREGYDVHCADTAERAEALLGSQDVDLVLLDIRLPGKDGL 62 +L+ DDD +R +L LSR GYDV A + + D DLV+ D+ +P ++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 TLTRELR-VRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVR 121 L ++ R ++ +++++ +N + I E GA DY+ KP + EL+ + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 HAREAHPAPA 131 + Sbjct: 124 RRPSKLEDDS 133
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 1e-13 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 7/210 (3%) Query: 5 ARYHRMLPELRKANLVEATLVCLKRHGFQGASIRKISAEAGVSVGLISHHYAGKDELVAE 64 AR + + + ++++ L + G S+ +I+ AGV+ G I H+ K +L +E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 65 AYMAVTGRVMGLLREAMAQAAPNARERLSAFFRASFCAELLDPQ---LLDAWLAFWGAVK 121 + + L E A+ + L + + + + L++ V Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 122 TADAINQVHDHSYGEYRNELGQLLAR-LAEEEGWQGFDADLAAISLSALLDGLWLESGLN 180 + Q + E + + Q L + + AAI + + GL Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 181 PGTFTPEQGVIICEAWVDGLQAGGRRRFSL 210 P +F ++ +V L +L Sbjct: 182 PQSFDLKK---EARDYVAILLEMYLLCPTL 208
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.6 bits (121), Expect = 6e-09 Identities = 31/172 (18%), Positives = 76/172 (44%), Gaps = 2/172 (1%) Query: 27 ILNMIDGFDVLVMAFTAASVSAEWGLNGAQVGLLLSAGLFGMAAGSLFIAPWADRFGRRP 86 IL+ + +V+ + ++ ++ A + +A + + G+ +D+ G + Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 87 LILLCLALSGIGMLLSALSQSPLQLALL-RGLTGLGIGGILASSNVIASEYASERWRGLA 145 L+L + ++ G ++ + S L ++ R + G G A V+ + Y + RG A Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 146 VSLQSTGYALGATLGGLLAVWLLGHWGWRSVFLFGGVVTVLVIPLVLLWLPE 197 L + A+G +G + + + W + L ++T++ +P ++ L + Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI-PMITIITVPFLMKLLKK 191
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 6e-07 Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 19/202 (9%) Query: 52 TGALLGISMLLATLMSLPAGLLFDRFARLHLATITLLLMTLAVGLLPFAQI--ILLVSLL 109 G LL + L+ + G L DRF R + ++L + ++ A +L + + Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRI 104 Query: 110 LVFMEFAAALFGIGLKALLADFVSVKQRVSAFSYRYILTNVAFAIGPVLGVRLAEVSLTL 169 + + A G A +AD +R F + GPVLG + S Sbjct: 105 VAGITGAT---GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHA 161 Query: 170 ALLVAAGACG-AAMVVMMCLGASQGQPRTSLKTGAPSLADALKVLGNDRNLVLYTLGSFF 228 AA G + L S R L+ A + + + + Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRW-------------ARG 208 Query: 229 NTVVHGRFTFFLSLWLLYQYPA 250 TVV F + L+ Q PA Sbjct: 209 MTVVAALMAVFFIMQLVGQVPA 230
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 41.7 bits (98), Expect = 3e-06 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%) Query: 6 FVTGGSGFVGQHLLAGLTAQGHKTWVLMRSPGNIE-----RLKEQVGQLGGNPEYIHAVE 60 VTG +GF+G H+ L GH+ + N+ LK+ +L P + + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLNDYYDVSLKQARLELLAQPGF-QFHK 58 Query: 61 GDIS-QEGLGLSEADKERVTSAAVFFHLAAQ----FSWGLTPERARTVNVQGALSVARLA 115 D++ +EG+ A F + +S P N+ G L++ Sbjct: 59 IDLADREGMTDLFASGH----FERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGC 113 Query: 116 ASQRIRLLMV 125 +I+ L+ Sbjct: 114 RHNKIQHLLY 123
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 81.2 bits (200), Expect = 9e-18 Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 16/164 (9%) Query: 347 TSAGDSFSGSSRADWIVGGDGNDELKGLSGDDMLEGGDGDDILDGGTGADIMIGGQGNDT 406 T+ D F GS D G DG+D ++G G+D L G G+D L GG G D + GG GND Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 407 YYVDWGNDKVIETSSAGGIDTVISSVSRTLGAYQENLVLTGSSAINGTGNNLANTLTGND 466 GN+ + + G D G VL G G GN + L G++ Sbjct: 785 LIGVAGNNYL----NGGDGDDEFQ----VQGNSLAKNVLFG-----GKGN---DKLYGSE 828 Query: 467 ADNVLNGGAGADIMVGGLGNDTYYVDWGNDKVIETSANGGIDTI 510 ++L+GG G D++ GG GND Y G I G D + Sbjct: 829 GADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKL 872 Score = 71.9 bits (176), Expect = 6e-15 Identities = 73/328 (22%), Positives = 116/328 (35%), Gaps = 65/328 (19%) Query: 381 EGGDGDDILDGGTGADIMIGGQGNDTYYVDWGNDKVIETSSAGGIDTVISSVSRTLGAYQ 440 GDGDD + G+ + G+G+D Y D + G T+ + + G Y Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDT---------GYLTIDGTKATEAGNYT 665 Query: 441 ENLVLTGSSAINGTGNNLANTLTGNDADNVLNGGAGADIMVGGLGNDTYYVDWGNDKVIE 500 VL G + G + Y + + Sbjct: 666 VTRVLGGDVKVLQEVVKEQEVSVGKRTEKT------------------QYRSYEFTHI-- 705 Query: 501 TSANGGIDTI--ISSVSRTLGDYQENLVLTGTAALYGNGNNLANTLTGNNGDNVLNGGAG 558 + + SV +G + + +G + + + GN+G++ L G G Sbjct: 706 --NGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKG 763 Query: 559 ADTMIGGLGNDTYYVDWGNDKVIETSANGGIDTVISSVSRTLGDHQENLVLTGTKANYGT 618 DT+ GG G+D Y GNDK+I + N ++ G Sbjct: 764 NDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNG-------------------------GD 798 Query: 619 GNSLDNTLTGNGADNLLNGGAGNDTLVGGAGNDRLVGDLGKDVLTGGAGNDVFAFNTTKE 678 G+ + A N+L GG GND L G G D L G G D+L GG GND++ + + Sbjct: 799 GDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSG-- 856 Query: 679 SGLTSTAWDVITDFKRGSDKIDVSGIDA 706 +I D DK+ ++ ID Sbjct: 857 -----YGHHIIDDDGGKEDKLSLADIDF 879 Score = 60.4 bits (146), Expect = 2e-11 Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 15/206 (7%) Query: 470 VLNGGAGADIMVGGLGNDTYYVDWGNDKVIETSANGGIDTIISSVSRTLGDYQENLVLTG 529 + G G D + G+ Y G+D V + G TI + + G+Y VL G Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGG 672 Query: 530 TAALYGNGNNLANTLTGNNGDNVLNGGAGADTMIGGLGNDTYYVDWGNDKVIETSANGGI 589 + G + T+ + ET + Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSY----------EFTHI---NGKNLTETDNLYSV 719 Query: 590 DTVISSVSRTL--GDHQENLVLTGTKANYGTGNSLDNTLTGNGADNLLNGGAGNDTLVGG 647 + +I + G ++ + GN ++ L G+ ++ L+GG G+D L GG Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGG 779 Query: 648 AGNDRLVGDLGKDVLTGGAGNDVFAF 673 GND+L+G G + L GG G+D F Sbjct: 780 DGNDKLIGVAGNNYLNGGDGDDEFQV 805
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 26.4 bits (58), Expect = 0.014 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 4 QGRMMAGVPQAWLAELGDHVALVTDPDGRAAVLSVMAYAARRRNDV--DDNDLVDMLELT 61 ++ P A A++ + + TD G A + Y R N V D N L D ++L Sbjct: 716 DTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEY---RENRVALDTNTLADNVDLD 772 Query: 62 EAAR 65 A Sbjct: 773 NAVA 776
>PERTACTIN#Pertactin signature. Length = 922 Score = 27.4 bits (60), Expect = 0.027 Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 6 PTPTELKLVRGNPGKRPINKNEPQPAKRIPSAPDHLSSDGQVAWGRLTVLLDRMGV 61 P P +L L G G+ I E P S P ++ Q W T +D + + Sbjct: 376 PEPVKLTLAGGAQGQGDIVATELPPIPGASSGPLDVALASQARWTGATRAVDSLSI 431
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 26.8 bits (59), Expect = 0.002 Identities = 7/24 (29%), Positives = 16/24 (66%) Query: 6 TGQLRSMLIGGQIEKVVKPCRSTV 29 +L++ +I G+I+KV +P + + Sbjct: 12 IDELKNTIINGKIDKVNQPEKDEI 35
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 6e-18 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Query: 5 VLVVEDDEVLRWLMTEAVTHLGHTVTDCASADDALAILEKIPDLSLVITDIQMPGHIDGL 64 +LV +DD +R ++ +A++ G+ V ++A + LV+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD-ENAF 63 Query: 65 ELAKAIWWEHPELPVIIVSGHVVFS--PSSLPANAR-FIKKPCTLDSLSRAMQELLPTR 120 +L I P+LPV+++S F + A ++ KP L L + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 65.5 bits (159), Expect = 4e-14 Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 2/189 (1%) Query: 122 LRGKVVVITGASSGIGRAAAHAFACKGARLVLAARDEEALFDVLDECTDCGTDAIAVTTD 181 + GK+ ITGA+ GIG A A A +GA + + E L V+ A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 182 VTHSDQVQALAAQASAFGHGRIDIWVNNAGVGAVGNFEDTPLEAHEQVIQTDLIGYLRGA 241 V S + + A+ G IDI VN AGV G E E + G + Sbjct: 66 VRDSAAIDEITARIER-EMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 242 YVALPFFKAQGSGILINTLSLGSWVAQPYAAAYSASKFGLRGLTEALRGELTKFPNIHVC 301 + + SG ++ S + V + AAY++SK T+ L EL ++ NI Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY-NIRCN 183 Query: 302 DIYPAVMDT 310 + P +T Sbjct: 184 IVSPGSTET 192
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.003 Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Query: 3 VVKPSPGSAQSIPANANGPKWDVGEAVSQLSWDDLRIIKTLSDCS-NRAATAKKLGINVS 61 V+ + + +A P ++++ + I+ L+ N+ A LG+N + Sbjct: 407 AVEENMRQYFASFGDALPPSGLYDRVLAEMEYP--LILAALTATRGNQIKAADLLGLNRN 464 Query: 62 TVSRRVAQVEKTLGVALFDHRKA 84 T+ +++ + LGV+++ ++ Sbjct: 465 TLRKKI----RELGVSVYRSSRS 483
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.9 bits (236), Expect = 1e-24 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 3 QSATLLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMD 62 AT+LV DD+ IR L +L+ GY V + A A G DLVV D+ +PD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GQQVLRELREWSA-VPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARV-RALLR 120 +L +++ +PV+V+S + + + + A + GA DY+ KPF + E + + RAL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 121 QVPQAGGSEVAASFGPLTV--DFAFRRVTLDGVEVALTR 157 + E + G V A + + + T Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 32.5 bits (74), Expect = 0.002 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Query: 5 DRLLVQILLVALLGAGLWVMAPFISALLWGAILAFASWPLMRFLTRLLGGRETLAAG--- 61 D+L + +L LL L A+ GA+ + + + +LL G+E + G Sbjct: 159 DQLTLPLLWGGLLFNLLGGFVSLGDAV-IGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFK 217 Query: 62 LLTM--AWILIVALPLVWL 78 LL AW+ ALP+V L Sbjct: 218 LLAALGAWLGWQALPIVLL 236
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 324 bits (831), Expect = e-111 Identities = 103/349 (29%), Positives = 188/349 (53%), Gaps = 3/349 (0%) Query: 9 DKTEDPTEKRKRDAREKGEVARSKELNTVAVTLAGAGGLLAFGGHVAETLLALMRMNFSL 68 +KTE PT K+ RDAR+KG+VA+SKE+ + A+ +A + L+ + E LM Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLML--IPA 61 Query: 69 TRDIIVDERAMGAFLLASGKMAIWAVQPVLILLFVVSFVAPIALSGFLFSGSLLQPKFSR 128 + + +A+ + + P+L + +++ + + GFL SG ++P + Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 129 MNPLSGIKRMFSMQALTELLKALAKFFVILVVAVVVLSGDRQALLSIANEPLEQAIIHSL 188 +NP+ G KR+FS+++L E LK++ K ++ ++ +++ G+ LL + +E Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 189 QVVGWSALWMSAGLLLIAAADVPFQLYQTHKKMKMTKQEVRDEYKDSEGKPEVKQRIRQL 248 Q++ + + G ++I+ AD F+ YQ K++KM+K E++ EYK+ EG PE+K + RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 249 QREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGAAPLLLAKGSDFMALKIREIGV 308 +E+ R M V + V++ NPTH A+ + Y + PL+ K +D +R+I Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP-LPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHNIQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIRQYRA 357 E + IL+ LARA+Y+ ++ IPA A A+VL ++ + + Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQ 349
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 136 bits (344), Expect = 3e-41 Identities = 94/255 (36%), Positives = 152/255 (59%), Gaps = 2/255 (0%) Query: 1 MLELTDTQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYVAVAVTVVIVPALPP 60 ML++T Q +W+ + PL RV A++ T PI R +P R++L +A+ +T I P+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 LPEFDPLSLRGMLLCAEQIIVGALFGLALQLLFQAFVVAGQIVAVQMGMAFASMVDPANG 120 S + L +QI++G G +Q F A AG+I+ +QMG++FA+ VDPA+ Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 VNVTVISQFMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVVNHFWELAGRMGW-V 179 +N+ V+++ M ML +LFL NGHL + +L ++F TLP+G + ++ + + G + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 180 FGAGLLLILPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADVLSH 239 F GL+L LP+I LL +N+A G++ R APQL+IF IGFPLTL +G+ + + + Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 240 YQALASETLQWLREL 254 + L SE L ++ Sbjct: 240 CEHLFSEIFNLLADI 254
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 53.2 bits (128), Expect = 3e-13 Identities = 21/74 (28%), Positives = 38/74 (51%) Query: 7 VDLFRDALWLTTLMVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIIAG 66 V AL+L ++ + + ++GL+V +FQ TQ+ EQTL F +LL + + L + Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PWLVQKFMEYITTL 80 W + + Y + Sbjct: 65 GWYGEVLLSYGRQV 78
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 269 bits (688), Expect = 2e-93 Identities = 137/244 (56%), Positives = 186/244 (76%), Gaps = 1/244 (0%) Query: 5 LRTLLTLALLLAAPLALAADPLSIPAITLSNTPDGQQEYSVSLQILLIMTALSFIPAFVI 64 +R LL++A +L + A +P IT P G Q +S+ +Q L+ +T+L+FIPA ++ Sbjct: 1 MRRLLSVAPVLLWLITPLAFA-QLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 65 LMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKE 124 +MTSFTRIIIVF +LR ALG P NQ+L G+ALFLT FIM+PV D++ DA QP+ +E Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 125 QMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSKRTDIAGPDQVPLTILVPAFVTSEL 184 +++ Q+A++K PL++FML QTR++DL LF RL+ + GP+ VP+ IL+PA+VTSEL Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179 Query: 185 KTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTL 244 KTAFQIGF IFIPFLIID+V+ASVLMA+GMMM+ P I+LPFK+MLFVLVDGW L++G+L Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 245 ASSF 248 A SF Sbjct: 240 AQSF 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 120 bits (301), Expect = 1e-37 Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 29/159 (18%) Query: 7 MANENEITSPEDQALADEWAAALEE-----TGSAGQADIDALLGGDTGSSSGPGRLPMEE 61 M++ N + AL D WA AL E T SA A L GGD SG + Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDV---SGAMQ----- 52 Query: 62 FASSPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEP 121 ++D+I+DIPV +++E+G T + I+ LL+L QGSV+ LD LAGEP Sbjct: 53 ----------------DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEP 96 Query: 122 LDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL 160 LD+L+NG LIA GEVVVV +K+G+R+TD+I+PSER+++L Sbjct: 97 LDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 257 bits (657), Expect = 2e-86 Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 9/324 (2%) Query: 5 DLLSQDEIDALLHGVDDGLVQTESASEPGSIKS---YDLTSQDRIVRGRMPTLEMINERF 61 ++LSQDEID LL + G E A + YD D+ + +M TL +++E F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAK 121 AR T S+ LR V V V + + E++ S+ P++L ++ + PL+G ++ +D Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFEYMNS 181 + F ++D FGG G+ AK++ R+ T E V+ V+ + +++E+W ++ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181 Query: 182 EVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGF--QSDLDD 239 E NP A IV PSE VV+ T ++ G ++ +PY IEP+ L + F S Sbjct: 182 ETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRS 241 Query: 240 QDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVE---LPEHLVLRANG 296 +++ LR+ + V + + A V +L +RDIL ++ GD+I + + + VL Sbjct: 242 STTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGN 301 Query: 297 VPAFKARLGSHKGNLALQIIDPIE 320 F + G +A QI++ IE Sbjct: 302 RKKFLCQPGVVGKKIAAQILERIE 325
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 28.3 bits (63), Expect = 0.042 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Query: 367 PNQQHLASKLGLHSLRHSNIFFLKNYLE 394 PN+ L+ K G+H+L H F++N+L Sbjct: 42 PNKDILSEK-GIHTLEHLYAGFMRNHLN 68
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.8 bits (93), Expect = 2e-05 Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 31/151 (20%) Query: 69 LATFAIS-FLIRPLGGMFWGPLGDRIGRKRVLAMTVLMMSVATFIIGILPTYQSVGWIAP 127 LA +A+ F P+ G L DR GR+ VL +++ +V I+ P W+ Sbjct: 49 LALYALMQFACAPVLGA----LSDRFGRRPVLLVSLAGAAVDYAIMATAPFL----WV-- 98 Query: 128 VALIALRLIQGFSTGGEYGGAATFLAEYAPDKRR----GFYGSFLEFGSLAGFSLGALVT 183 L R++ G TG A ++A+ R GF + FG +AG LG L Sbjct: 99 --LYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL-- 153 Query: 184 LSVSVVIGDAAMYEWGWRVPFLIAAPLGVIA 214 M + PF AA L + Sbjct: 154 -----------MGGFSPHAPFFAAAALNGLN 173 Score = 30.6 bits (69), Expect = 0.015 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 261 VLVAALNITYYILLAYMPTYMHKEVGASENMSLLAPLVGMLAMMMFI--PFAGRISDVVG 318 V + A+ I +++ +P + V +++ + L+ + A+M F P G +SD G Sbjct: 14 VALDAVGIG--LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFG 71 Query: 319 FKKMWFFSLIG 329 + + SL G Sbjct: 72 RRPVLLVSLAG 82
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 28.7 bits (64), Expect = 0.036 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 11/42 (26%) Query: 159 KYPDTAF----------LGRVSNYHGGQIVSKAAAEKLGERY 190 K+PD F +G+VS +HGG+I K A K+ ++Y Sbjct: 110 KFPDELFRAIRVDPKTHVGKVSEFHGGKI-DKQLANKIFKQY 150
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 45/270 (16%), Positives = 91/270 (33%), Gaps = 36/270 (13%) Query: 72 VIGRIGDKRGRKPAMLLTIICMAIGSIGIGLIPTYETIGVGAPILLVMLRCLQGFAAGGE 131 V+G + D+ GR+P +L+++ A+ Y + + ++ + + G Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVD---------YAIMATAPFLWVLYIGRIVAGITGAT 112 Query: 132 WGTSASYIVEWSPAGRKGFFGSFQSVSSSGGALLASLVASALLLIPAEDLLDWGWRVPFI 191 + +YI + + + F S G + ++ + PF Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP--------HAPFF 164 Query: 192 AGG-LAIFAFSL-FLRAHAEETPEYVNSKAEVVNPTDSKPYVLGLQAFGFTIFWTTLSYL 249 A L F E + E +NP S + G+ + + L Sbjct: 165 AAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQL 224 Query: 250 VS----AYMVTYTQNHAGLTRTEALIS-SNIALLLQITLIPVAGALSDRFGRKP------ 298 V A V + ++ T IS + +L + + G ++ R G + Sbjct: 225 VGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGM 284 Query: 299 ------LLLLACLGTATLAYPILNLMSGGA 322 +LLA +A+PI+ L++ G Sbjct: 285 IADGTGYILLAFATRGWMAFPIMVLLASGG 314 Score = 36.3 bits (84), Expect = 2e-04 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%) Query: 278 LLQITLIPVAGALSDRFGRKPLLLLACLGTATLAYPIL 315 L+Q PV GALSDRFGR+P+LL++ G A + Y I+ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAG-AAVDYAIM 90
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.023 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 11/86 (12%) Query: 281 SATAIAQMAATIQQVTHNVQS---TAHAASDADQLAQQ--------GSELALKSLKDMGS 329 A I + Q+ TA ++ D+L ++ SELA S++ + Sbjct: 131 GAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKASIELINQ 190 Query: 330 MSDAVNDIGQAVNALAEQTQSIGSVV 355 + D V + VN+ ++Q ++GSV+ Sbjct: 191 LVDTVASLNNNVNSFSQQLNTLGSVL 216
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.2 bits (65), Expect = 0.013 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Query: 46 GVPVPAFVAGLTGITTAMLRSA--PPVEKVMNEVA 78 G PV A V +TGI + +L ++ E V +++A Sbjct: 392 GAPVSALVGAVTGIISGILEASKQAMFEHVASKMA 426
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.5 bits (183), Expect = 7e-16 Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 11/142 (7%) Query: 641 ARVLVVDDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTKAHLRDYFDAVLLDQNMP 700 A +LV DD+ R VL Q S G +V + + D V+ D MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-----AGDGDLVVTDVVMP 58 Query: 701 GMTGMQLAAKIKEDPSLNHDILVVMLTGISNAPSKVIARNAGVKRILAKPVAGYTLKTTL 760 L +IK+ D+ V++++ + + + A G L KP L + Sbjct: 59 DENAFDLLPRIKK---ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD---LTELI 112 Query: 761 AEELAQRGREQAMPASLPGIPQ 782 + P+ L Q Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQ 134 Score = 64.1 bits (156), Expect = 1e-12 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 791 RVLVAEDNSISTKVIRSMLGKLNLKPDTACNGEEALQAMKAQHYDLVLMDCEMPILDGFS 850 +LVA+D++ V+ L + N + + A DLV+ D MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 851 ATQQLRAWEAENQRQRTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQLRELIQYWA 910 +++ R PV+ ++A +A G ++ KP +L++L +I Sbjct: 65 LLPRIKKA-----RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 911 NHREAKVDP 919 + + Sbjct: 120 AEPKRRPSK 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 354 bits (910), Expect = e-121 Identities = 123/367 (33%), Positives = 192/367 (52%), Gaps = 43/367 (11%) Query: 106 ILDEQGKVVAFVERLTTITLASAQPQEQGLVGRAPTFKAALASLQRAAPAQIPVLLQGES 165 ++ G+ +A +R + +Q LVGR+ + L R + +++ GES Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDSQ-DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169 Query: 166 GTGKELFARAVHMGSPRANGPLVVVDCTGLTESLFESELFGYEKGAFTGANQRKIGLAEA 225 GTGKEL ARA+H R NGP V ++ + L ESELFG+EKGAFTGA R G E Sbjct: 170 GTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQ 229 Query: 226 AHGGTLFLDEIGEVPLAMQVKLLRLIESGSFRPVGSLRTVHSDFRLISATHKPLKQMVAD 285 A GGTLFLDEIG++P+ Q +LLR+++ G + VG + SD R+++AT+K LKQ + Sbjct: 230 AEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQ 289 Query: 286 GSFREDLYYRISGFPIRLPALRERVKDLPLLAQSLLQRMA--GQPTPRLSEDALQQLALH 343 G FREDLYYR++ P+RLP LR+R +D+P L + +Q+ G R ++AL+ + H Sbjct: 290 GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAH 349 Query: 344 PFPGNIRELRNILERARLFADDGVIRPEHLPEDT-------------------GLTGAAK 384 P+PGN+REL N++ R VI E + + ++ A + Sbjct: 350 PWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVE 409 Query: 385 GSGRR------------NDLGE---------LAQALEQFKGSRSELASHLGMSERTLYRR 423 + R+ + AL +G++ + A LG++ TL ++ Sbjct: 410 ENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK 469 Query: 424 LKALGLN 430 ++ LG++ Sbjct: 470 IRELGVS 476
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.030 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%) Query: 185 APVALPAAEVVPQAAGSAEPSRHDDVDALQPLPAPAVPTAEVAEAPELELEAFGPALIET 244 PV P E P E ++ +P P P + E P+ +++ Sbjct: 71 EPVVEPEPEPEPIPEPPKEAPV--VIEKPKPKPKPKPKPVKKVEQPKRDVKPVESR---P 125 Query: 245 AEMPPAPLPRDKTPLPEAEVSASESLAEAEPLQAL 279 A P T ++ + A +AL Sbjct: 126 ASPFENTAPARPTSSTATAATSKPVTSVASGPRAL 160
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 30.9 bits (70), Expect = 0.015 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 6 AFIALLRQIFYRPWMLATLAALASAAVLLSASIGIALQQMKQSESEQMNAQGERFL 61 IAL+ + + + ++L+ +G+ L+ +KQ ES+ E FL Sbjct: 383 GLIALVPTMALVGFGASQNFPFGGTSILI--IVGVGLETVKQIESQLQQRNYEGFL 436
>PF06580#Sensor histidine kinase Length = 349 Score = 52.6 bits (126), Expect = 2e-09 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 39/187 (20%) Query: 415 LETIG----EEMQRLTQLINDLLNFSRYQSGLQKLELAPCA-----IDDLLDHAQSRFAE 465 L I E+ + +++ L RY A +D L A +F + Sbjct: 179 LNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFED 238 Query: 466 QAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRH----TANGGRIRLHARRHA 521 + ++ +++P + +Q V + ++ L+ N I+H GG+I L + Sbjct: 239 R-----LQFENQINPAIMDVQ--VPPM--LVQTLVENGIKHGIAQLPQGGKILLKGTKDN 289 Query: 522 ERVIISVEDNGEGISYGQQARIFEPFVQVGRKKGGAGLGLALCKE-IVQLHGGRMGVF-- 578 V + VE+ G + K G GL +E + L+G + Sbjct: 290 GTVTLEVENTGSL--------------ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLS 335 Query: 579 SRPGQGT 585 + G+ Sbjct: 336 EKQGKVN 342
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 440 bits (1134), Expect = e-154 Identities = 162/476 (34%), Positives = 239/476 (50%), Gaps = 40/476 (8%) Query: 9 GRILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGL 68 IL+ DD++AI L GY V ++AA + DL D+ + ++N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 69 DVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQ 128 D+L +++ P + V++++A + TA+ A + GA DYL KP +L + L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 129 LSARLEALEGEIRKPKDGLDSHSPAMMAVLETARQVAITDANILILGESGTGKGELARAI 188 R LE + + L S AM + ++ TD ++I GESGTGK +ARA+ Sbjct: 124 --RRPSKLEDDSQDG-MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 189 HGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTLFLDEI 248 H + KR V IN ++ +L+ESELFGH +GAFTGA + GR QA+GGTLFLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 249 GDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFREDLLYRL 308 GD P+ Q +LLR +Q EY VG R+DVRI+AATN +L++ + + FREDL YRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 309 NVITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWPGNIRELR 368 NV+ L LPPLR+R+EDI L F+ + KE + F EA + + WPGN+REL Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 369 NVVERASIICPQERVEISHL----------------------------------GMGEQP 394 N+V R + + PQ+ + + Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 395 AGSAPRVGA-ALSLDELERAHIGAVLA-ASDTLDQAAKTLGIDASTLYRKRKQYNL 448 + P G L E+E I A L +AA LG++ +TL +K ++ + Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 28.3 bits (63), Expect = 0.030 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 70 ERQLAEDVARATRGIEQVENLLQLNAQLVERPQELRAYAQRL 111 +R+L++ AR + EQV L +E+ Q + L Sbjct: 70 KRKLSDSQARVSDVEEQVNQYLSK-VPELEQKQNVSELLSLL 110
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 28.7 bits (64), Expect = 0.033 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 247 IVTQDMRLSNFLAQVSRYRHGYLGCSNEIADLRLSGVFRLEDPEQLLRLLPQTL 300 V + L + L + S++I D ++SG F ++P+ L+ + Sbjct: 38 YVAKGESLRDLLTDFGANYDATVVVSDKIND-KVSGQFEHDNPQDFLQHIASLY 90
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 29.0 bits (65), Expect = 0.010 Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 36 ADAADLAQDTFVRLLQRREQLQLNAPRAFLRTVARGLV 73 + D +L +++L L P+AF+ ARG + Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYI 173
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 37.5 bits (87), Expect = 5e-06 Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 17/114 (14%) Query: 39 KLYERINHEMEEETQHADALMRRILMLEGTP---------DMRADDLEVGSTVPEMIEAD 89 L+E+ + + D + R+L + G P D ++ EM++A Sbjct: 45 TLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQAL 104 Query: 90 LKLEYKVRGALCKGIELCELHKDYVSRDILRAQLADTEEDHTYWLEKQQGLIKA 143 + ++ I L E ++D + D+ + + +EKQ ++ + Sbjct: 105 VNDYKQISSESKFVIGLAEENQDNATADLFVGLIEE--------VEKQVWMLSS 150
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 78.8 bits (194), Expect = 8e-18 Identities = 74/375 (19%), Positives = 141/375 (37%), Gaps = 58/375 (15%) Query: 33 MVLPV-LATYGMDLAGATPALIGLAIGAYGLTQAVLQIPFGMISDRIGRRPVIYLGLVIF 91 MVL V L D PA A+ LT ++ +G +SD++G + ++ G++I Sbjct: 31 MVLNVSLPDIANDF-NKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN 89 Query: 92 ALGSVLAAQADSIWGV-IAGRILQGAG--AISAAVMALLSDLTREQHRTKAMAMIGMSIG 148 GSV+ S + + I R +QGAG A A VM +++ +++R KA +IG + Sbjct: 90 CFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVA 149 Query: 149 LSFAVAMVVGPLLTSAFGLSGLFLVTAGLALVGILLIAFVVPSTHSILQHRESGVARQAI 208 + V +G ++ S L L+ + L+ + Sbjct: 150 MGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEV---------------- 193 Query: 209 GPTLRHPDLLRLDVSIFILHAVLMASFVALPLAFVERGGLPKEQHWWVYLTALFISFFAM 268 R+ I +LM+ + + F + +L +SF Sbjct: 194 ----------RIKGHFDIKGIILMSVGIVFFMLFT-------TSYSISFLIVSVLSFLIF 236 Query: 269 VPFIIYGEKKRKMKRVLAGAVSVLLLTEIYFWEWADGLRGLVIGTVVFFT--AFNLLEAS 326 V + +++V V L I F + G++ G ++F T F + Sbjct: 237 V---------KHIRKVTDPFVDPGLGKNIPF------MIGVLCGGIIFGTVAGFVSMVPY 281 Query: 327 LPSLVSKVSPAGGKGTAMGVYSTSQFLGAALGGILGGWLFQHGGLNTVFLGSAVLCAIWL 386 + V ++S A + + S + +GGIL + + G L + +G L +L Sbjct: 282 MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGIL---VDRRGPLYVLNIGVTFLSVSFL 338 Query: 387 IVALRMNEPPYVTSL 401 + + + ++ Sbjct: 339 TASFLLETTSWFMTI 353
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.8 bits (69), Expect = 0.003 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 96 YTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQA 155 Y + + NG L+G + + P Q G G Q P Q Q PQ+ Sbjct: 548 YRYRLAANGNGQWSLVGAKAPPAPK---PAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQ 604 Query: 156 PQRPAPQQPAPQ 167 P+ PAPQ PA + Sbjct: 605 PEAPAPQPPAGR 616
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.5 bits (198), Expect = 4e-20 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 16/247 (6%) Query: 2 KTAFVTGASSGFGRAICCTLIGKGYRVIG---GARRMDKLKALEAELGVNFIPLALDVTD 58 K AF+TGA+ G G A+ TL +G + +++K+ + + DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 59 SVSLDKAVEQMREASLQIDLLVNNAGLALGVDRAQTSSAANWQQMIDTNITGLAMVTHKI 118 S ++D+ ++ ID+LVN AG+ L + S W+ N TG+ + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 119 LPQMVEADSGMIINIGSIAGTYPYPGGNVYGASKAFVRQFSLNLRADLAGTRVRVSNIEP 178 M++ SG I+ +GS P Y +SKA F+ L +LA +R + + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 179 GLCSGTDFSVVRLNGDMDAVQALYRDVEALL----------PEDIAATVAW-VAEQPAHV 227 G + TD + A Q + +E P DIA V + V+ Q H+ Sbjct: 188 G-STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 228 NINTIEI 234 ++ + + Sbjct: 247 TMHNLCV 253
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.3 bits (68), Expect = 0.002 Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 64 DEAHLLNITVKPENQGCGLGLRLLKHLMARAYQLNGRECFLEVRASNQSAYRLYERYGF 122 A + +I V + + G+G LL + A + + LE + N SA Y ++ F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 30.2 bits (68), Expect = 0.012 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 261 ATDMPLRQVLERLAGYQGQRLWMMDEQVAHRRVSGDFNLDQPGQSLQSLAAAQQLQ 316 A LR +L + + D + +VSG F D P LQ +A+ L Sbjct: 40 AKGESLRDLLTDFGANYDATVVVSD--KINDKVSGQFEHDNPQDFLQHIASLYNLV 93
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 54/270 (20%), Positives = 100/270 (37%), Gaps = 14/270 (5%) Query: 38 LIQSVLPAIYPMLKANYDLSFAQIGMITLTFQITASLLQPWVGFFTDRRPTPNLLPLGTL 97 LI VLP + L + D++ A G++ + + P +G +DR +L + Sbjct: 23 LIMPVLPGLLRDLVHSNDVT-AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 98 CTLVGIVMLAFVGSFPMILLASALVGIGSSTFHPETSRIARLASGGR----FGLAQSTFQ 153 V ++A ++ + + GI +T + IA + G FG + F Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 154 VGGNTGSALGPLLAAAIV-IPFGQTHVAWFGLAGLFFLGVTLMLRGWYKEHLNQAKARKA 212 G G LG L+ PF A L GL FL +L +K + R+A Sbjct: 142 FGMVAGPVLGGLMGGFSPHAPF----FAAAALNGLNFLTGCFLLPESHKGERRPLR-REA 196 Query: 213 VQATHGISRNRVIAALIVLGLLVFSKYFYMASFTSYFTFYLIEKFGVSVASSQLHLFLF- 271 + R + + L + F + + + ++F + + L F Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFG 256 Query: 272 -LGAVAAGTFFGGPIGDRIGRKAVIWFSIL 300 L ++A GP+ R+G + + ++ Sbjct: 257 ILHSLAQAMIT-GPVAARLGERRALMLGMI 285 Score = 31.3 bits (71), Expect = 0.007 Identities = 21/90 (23%), Positives = 35/90 (38%) Query: 281 FGGPIGDRIGRKAVIWFSILGVAPFTLALPYADLFWTTVLSVVIGFILASAFSAIVVYAQ 340 G + DR GR+ V+ S+ G A + A W + ++ I + + Y Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 341 ELVPGSVGMIAGIFFGLMFGFGGIGAALLG 370 ++ G F FGFG + +LG Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLG 151
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 7e-07 Identities = 76/341 (22%), Positives = 131/341 (38%), Gaps = 21/341 (6%) Query: 24 LPLVSLRLHEAGASTLEIGIISAIPAAGMMLSAFLVDACCRHLTRRTIYLLCFSLCTVSI 83 LP + L + T GI+ A+ A A ++ A RR + L+ + V Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 84 ALLESAFGSLWLLALLRLGLGL-GMGIAIILGESWVNELCPEHNRGKIMALYATSFTGFQ 142 A++ +A LW+L + R+ G+ G A+ +++ ++ R + + F Sbjct: 88 AIMATA-PFLWVLYIGRIVAGITGATGAVAG--AYIADITDGDERARHFGFMSACFGFGM 144 Query: 143 VLGPAMLAVLGADSPWITGVV-TVCYGLALLCIVLTVPNDHVEHEEGEKSFG---LAGFF 198 V GP + ++G SP GL L +P H + LA F Sbjct: 145 VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFR 204 Query: 199 RVAPALCMAVLFFSFFDAVVLSLLP----VYATSHGFA--VGVAALMVTVVFAGDMLFQL 252 +A L FF ++ +P V F + + L Q Sbjct: 205 WARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 253 PL-GWLADRV-ERTGLHLACGLVAMVIGIGLPWLLNLTWLLWPLLVVLGAVAGGIYTLAL 310 + G +A R+ ER L L G++A G L W+ +P++V+L +GGI AL Sbjct: 265 MITGPVAARLGERRALML--GMIADGTGYILLAFATRGWMAFPIMVLLA--SGGIGMPAL 320 Query: 311 -VLIGQRFKGQDLVTANASVGLLWGVGSLVGPLVSGAAMNV 350 ++ ++ + S+ L + S+VGPL+ A Sbjct: 321 QAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.040 Identities = 29/154 (18%), Positives = 48/154 (31%), Gaps = 8/154 (5%) Query: 382 DEVASALGWFPKVLALALMVMMTMERMNSVIGASLALTVAVNGLTALVVALTFAGALLCY 441 ++ AL VL+ + M I ++T+ +++VAL A LC Sbjct: 436 SQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPA-LCA 494 Query: 442 R--RTLRKHDLERPTGLAGLIPFVMVIWLTLILLALLTGYL--TLAYFLTAKLLWVSLVI 497 + + E G G + L T Y L L+ +V+ Sbjct: 495 TLLKPVSAEHHENKGGFFGWF-NTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVV 553 Query: 498 TCAYLLTTFF--GDLCETLLSPRQPGGLALASTL 529 L ++F D L + P G T Sbjct: 554 LFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.6 bits (64), Expect = 0.029 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 16/108 (14%) Query: 16 SCIPRVS-RYPRVKDVIARKYRLVVKTIGY-----IGWSLFWLLIWDVLVTIDFMLFLNS 69 C +S RYP V+ + A V T+ L W+L+ + +D ML L Sbjct: 101 GCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKML-LPD 159 Query: 70 KFTLPLIPLTLLGSALVVLVSFRNS---------SAYSRWWEARTLWG 108 + TLPL+ LL + L VS ++ +S +W + L G Sbjct: 160 QLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTG 207
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.0 bits (75), Expect = 3e-04 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 80 NVVVAPGARGLGVARYLVTAMIDLARQQYSAREVWVSCFNHNTAGLLLYPQLGFMPFGIE 139 ++ VA R GV L+ I+ A++ + + + + N + Y + F+ ++ Sbjct: 94 DIAVAKDYRKKGVGTALLHKAIEWAKENHFC-GLMLETQDINISACHFYAKHHFIIGAVD 152
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.5 bits (71), Expect = 0.003 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 154 HDGPITKGMSGGPVFADDGKVVGINVAIIPTDEINAGKR 192 +D T G SG PVF + +V+GI+ +P E N Sbjct: 228 YDLSTTGGNSGSPVFNEKNEVIGIHWGGVPN-EFNGAVF 265
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 75.3 bits (185), Expect = 7e-17 Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 13/169 (7%) Query: 446 TIGPSLGADNITKGIDASLWGMLFVSLFIIAIY------RAFGVLATIALAGNMVLLLAL 499 ++GP + + + + + L + +I Y F + A +AL +++L + L Sbjct: 142 SVGPKVSGELVWTAVWS-----LLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGL 196 Query: 500 MSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA--GMSVQRAIHEGFNRAYSA 557 ++L L +A ++ G +++ V++F R+RE + M ++ ++ N S Sbjct: 197 FAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSR 256 Query: 558 IVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALV 606 V +TTLL + G ++GF M G+FT +++V V + +V Sbjct: 257 TVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIV 305
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 296 bits (759), Expect = e-102 Identities = 104/302 (34%), Positives = 160/302 (52%), Gaps = 20/302 (6%) Query: 2 KTINFMGVRNVAFAVTVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADVKAVRAE 61 +F + F +++ + ++ GLNFG+DF GGT I DV RA Sbjct: 12 TNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAA 71 Query: 62 LVESGFNEAVVQSFG------ATTDLLVRMP------------GDDPMLGNKVAEALQKA 103 L + ++ ++R+ L NKV AL Sbjct: 72 LEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAV 131 Query: 104 GGDNPAKVKRVEFVGPQVGEELRDQGGIGMLLALGGILIYLAFRFQWKFAVGAIVSLIHD 163 K+ E VGP+V EL +L A I+ Y+ RF+W+FA+GA+V+L+HD Sbjct: 132 DPA--LKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHD 189 Query: 164 VVVTLGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRKASLIENINVS 223 V++T+G+ + Q+ FDLT +AA+L I GYS+NDT+VVFDR+REN + L + +N+S Sbjct: 190 VLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLS 249 Query: 224 TTQTLLRTVATSVSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWLN 283 +TL RTV T ++TLLA+ +L +GGD + GF A+ GV GTYSS+Y+A +++++ Sbjct: 250 VNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIG 309 Query: 284 LS 285 L Sbjct: 310 LD 311
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 119 bits (299), Expect = 3e-34 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 11/139 (7%) Query: 101 PPEPVAVVEEVVVQKEEVIVIRDVHFEFDSARLTASDKERLNTIATRLKQ-EAPSARLSV 159 P A VQ + + DV F F+ A L + L+ + ++L + + V Sbjct: 198 PVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVV 257 Query: 160 SGHTDSVGSDSYNQKLSERRAHSVTDYLVESGVPRSSFVSVVGAGETQPVADNATAEGR- 218 G+TD +GSD+YNQ LSERRA SV DYL+ G+P +S G GE+ PV N + Sbjct: 258 LGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADK-ISARGMGESNPVTGNTCDNVKQ 316 Query: 219 --------AMNRRTEIKIQ 229 A +RR EI+++ Sbjct: 317 RAALIDCLAPDRRVEIEVK 335
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 127 bits (320), Expect = 6e-37 Identities = 57/140 (40%), Positives = 77/140 (55%), Gaps = 13/140 (9%) Query: 138 PAAPPASAPEPSPEVIT--LDDNGAVMFAFDSAELTPAAQQRLQGLVEKL--NSPTVAKV 193 A A AP P+PEV T V+F F+ A L P Q L L +L P V Sbjct: 196 AAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSV 255 Query: 194 RVIGHTDSVGSDSYNQALSERRASSVAEYLIGQGLEMGKVTSQGRGESEPVTDNETEEGR 253 V+G+TD +GSD+YNQ LSERRA SV +YLI +G+ K++++G GES PVT N + + Sbjct: 256 VVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVK 315 Query: 254 AR---------NRRVELHLN 264 R +RRVE+ + Sbjct: 316 QRAALIDCLAPDRRVEIEVK 335
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 28.1 bits (62), Expect = 0.004 Identities = 13/46 (28%), Positives = 19/46 (41%) Query: 43 FGLHLLEVLFFNRSLRGRSHRWFDRLQILLTGIFHVMSIPRPREAP 88 LHLL + R WF R ++T + + +P R AP Sbjct: 180 ISLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRVPHDRSAP 225
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 55.3 bits (133), Expect = 1e-10 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 177 PKTAVLVLGHADSSGAAVANQKLSLERAASVSAIFRLSGLQRDRLTLKGMGSVMPRAAN- 235 +V+VLG+ D G+ NQ LS RA SV G+ D+++ +GMG P N Sbjct: 251 KDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310 Query: 236 -DSAEGR-------ALNRRVE 248 D+ + R A +RRVE Sbjct: 311 CDNVKQRAALIDCLAPDRRVE 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 2e-18 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 6 PRILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLMLPGEDGL 65 IL+ +DD + + + L G++V + ++ A R I DLV+ D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 SICRRVRSQYQG-PILMLTARSDELDQVQGLDLGADDYVCKP-VRPRLLLARIQALLRRS 123 + R++ P+L+++A++ + ++ + GA DY+ KP L+ +AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 124 ETVDSKRQDLAFGALRI 140 D G + Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 2e-04 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 23/106 (21%) Query: 430 LQNLVGNAMRHA------EGEVRLSYQLGQQRCRIDVEDDGPGIPEGFWDRIFTPFTRLD 483 +Q LV N ++H G++ L ++VE+ G + Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------- 306 Query: 484 DSRTRASGGHGLGLSIVRRIIYWHAGRATVGRSEALGGACFSLNWP 529 T+ S G GL ++ R+ + A + SE G + P Sbjct: 307 ---TKESTGTGL-QNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 96.3 bits (239), Expect = 2e-26 Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 14/224 (6%) Query: 11 LRHHWPLPRPLPGAVLVSCAFDPAHLATDDFQRAGIVPSASLQRSVAKRQAEYLAGRVCA 70 L H+PLP G L FD + D + L+ + KR+AE+LAGR+ A Sbjct: 2 LTSHFPLP--FAGHRLHIVDFDASSFREHDLLW--LPHHDRLRSAGRKRKAEHLAGRIAA 57 Query: 71 RAALQHLDGRDYVPGTHEDRSPIWPAGIHGSITHGKGWAAAVVAGENSCQGLGLDQEALL 130 AL+ + G VPG + R P+WP G+ GSI+H A AV+ S Q +G+D E ++ Sbjct: 58 VHALREV-GVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVI----SRQRIGIDIEKIM 112 Query: 131 DDERAERLMGEILIPAELERLDRRQLG--LTVTLTFSLKESLFKTLYPLTRQRFYFEHAE 188 A L I+ E + L L L +TL FS KES++K + F A+ Sbjct: 113 SQHTATELAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSAK 171 Query: 189 VLDWSAEGLARLRLLTDLSPQWQQGAELQGQFCLQDGHLLSLVS 232 V +A L LL + + ++ ++ +D +++LVS Sbjct: 172 VTSLTA-THISLHLLPAFAATMAE-RTVRTEWFQRDNSVITLVS 213
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 28.0 bits (62), Expect = 0.024 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 14/171 (8%) Query: 2 KTFNTLLAAMAVCAAGITTAQAADDNFASLTYGQTS----DKVRKSGLLQRNTDHLNADG 57 KT + A+A A A + + G + + +G N A G Sbjct: 3 KTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFG 62 Query: 58 IIGKDDTWGVRLGKINDQGRYYMTYDNVSGDHS--GLKLRQENLLGSYDLFLPVGDTTKL 115 + G +G + GR +G + G++L Y P+ D + Sbjct: 63 GYQVNPYVGFEMG-YDWLGRMPYKGSVENGAYKAQGVQL---TAKLGY----PITDDLDI 114 Query: 116 FGGGSLGVTKLTQDSPGASRDTDYGYAYGLQAGVIQDITDKASVELGYRYL 166 + V + S ++ D G + GV IT + + L Y++ Sbjct: 115 YTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT 165
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 3e-21 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 2 KLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGLE 61 +LV +D+A +R L L +G+ V ++A DL + D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEE-LEARLNALLRRSS 120 L+ R++ P+L+++A+ + ++ GA DYL KPF E + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.022 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 29/104 (27%) Query: 326 EKRVDVVLELPDA---AQVPMEQGALLEMLGNLLENAYR------LSLGQVRVSLMKAPG 376 E R+ ++ A QVP +L + L+EN + G++ + K G Sbjct: 237 EDRLQFENQINPAIMDVQVP----PML--VQTLVENGIKHGIAQLPQGGKILLKGTKDNG 290 Query: 377 YLTLCIEDDGPGVPVDQRERILERGERLDSQHPGQGIGLAVVKD 420 +TL +E+ G L + G GL V++ Sbjct: 291 TVTLEVENTGSLA--------------LKNTKESTGTGLQNVRE 320
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 4e-04 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 86 VDMLFVAPGYRGQGVGKRLLRYAIS-----ELNAEYLDVNEQNPKALGFYLHEGFEVIG 139 ++ + VA YR +GVG LL AI L+ + N A FY F + Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 28.5 bits (63), Expect = 0.038 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 18/62 (29%) Query: 9 DMPPPVKTVGVLAWMRANLFSSWL------------------NTLLTLFAIYLVWLIVPP 50 D P P+ + + W N+ SS L L++L+A + + L+VPP Sbjct: 47 DEPAPLNAMTLAQWSSPNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPP 106 Query: 51 LL 52 L+ Sbjct: 107 LM 108
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1318 bits (3412), Expect = 0.0 Identities = 668/1033 (64%), Positives = 827/1033 (80%), Gaps = 4/1033 (0%) Query: 1 MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60 M+ FFI RPIFAWV+A+++M+ GAL+IL+LP+ QYP+IAPPA++++ YPGA AQTVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120 V QVIEQ +NGIDNL Y+SS S+S GS+TIT TF+ GT+PD AQVQVQNKL LATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180 EVQQQGI V K+ ++L+V G VS++ T+DD+++Y+ SN++D +SR GVGD Q+FGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240 QYAMRIWLD LNK++LTPVDV + QN Q+++GQLGG PALPG QLNA+II +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300 + E+F + L+VN DGS VRL DVA+V LGGENY V A+ NGKPA+GL +KLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360 DTAKA++ + L+PFFP G+K ++PYDTTP V SI V+ TL EA++LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N RAT+I T+ VPVVLLGTF ILAA G+SINTLTMF MVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480 E+ LPPKEAT++SM QIQGALVGIA+VLSAV +PMAFFGGSTG IYRQFSITIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540 SVLVALI TPALCAT+LKP+ EHH KGGFFGWFN FD SVN Y SVG IL + Sbjct: 481 SVLVALILTPALCATLLKPVSA-EHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600 +LL YALIV GM+ LF R+P++FLPEEDQGV +Q PAG++ ERTQ V+DQ+ +Y LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERS-KENSVFALAQRAQQHFFTFRD 659 +E V SVFTVNGF+F+G+ Q++GMAF+ LKPW+ER+ ENS A+ RA+ RD Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 660 AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKI-LSAVRPNG 718 V F PA++ELG ATGFD L D+ G+GH+ L +ARNQ L AAQ L +VRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 719 LNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSAR 778 L D Q++L +D E+A ALGV+++DIN T+S ALG +YVNDFIDRGRVKK+Y+Q + R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 779 MSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEA 838 M PED+ K YVR+ GEMVPFS+F W YGSP+L RYNG+ +MEI G APG S+G+A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 839 MAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIA 898 MA +E +A +LP+GIG+ WTGMSY+E+LSG+Q PAL A+S + VFLCLAALYESWSIP++ Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 899 VVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHE-QGRSL 957 V+LVVPLGI+G L+A +L NDVYF+VGLLTTIGL+AKNAILIVEFAK+L E +G+ + Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 958 YDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIF 1017 +A + A RMRLRPI+MTSLAFILGV+PL I++GAG+G+Q+A+G GV+GGM+SAT+LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1018 WVPLFFVAVSSLF 1030 +VP+FFV + F Sbjct: 1020 FVPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 37/226 (16%), Positives = 81/226 (35%), Gaps = 23/226 (10%) Query: 73 ILKRLFKEGS----EVKEGQQLY---QIDPAVYEATLANAKANLLATRSLAERYKQLIDE 125 L + + V E + Y + VY++ L ++ +L+ + + QL Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 126 QAVSKQEYDDANAKRLQAEASLKSAQIDLRYTKVLAPISGRI-GRSSFTEGALVSNGQTD 184 + + K L + + + + AP+S ++ TEG +V+ +T Sbjct: 299 EILDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET- 355 Query: 185 AMATIQQLDPIYVDVTQSTAELLKLRRDL------ESGQLQKAGDNAASVQLVLEDGSLF 238 M + + D + V ++ + E+ + G V+ + D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 239 KQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAG 284 ++ G + ++++E S + + L GM V A +K G Sbjct: 416 QRLGLVFNVIISIEENCLSTGNKNIP------LSSGMAVTAEIKTG 455 Score = 42.9 bits (101), Expect = 1e-06 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%) Query: 61 RVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLAERYK 120 R E++P N I+ + + KEG V++G L ++ EA +++LL R RY+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 QLIDEQAVSKQEYDDANAKR--LQAEASLKSAQIDL 154 L ++K + L Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 140 bits (354), Expect = 6e-44 Identities = 79/209 (37%), Positives = 121/209 (57%) Query: 1 MVRRTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQ 60 M R+TK+EAQETR I++ A R F ++GV+ T+L +IA+ AGVTRGAIYWHF +K++L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ALLDSLHETHDHLARASESEDELDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFT 120 + + L +++ DPL +R++L+ V V + R R + EI+ HKCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDVERAAVAMFAYVDGLIGRWLL 180 +M ++Q +++ L+ + I L + + LP +L RAA+ M Y+ GL+ WL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 LPDSVDLLGDVEKWVDTGLDMLRLSPALR 209 P S DL + +V L+M L P LR Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 138 bits (350), Expect = 2e-38 Identities = 89/412 (21%), Positives = 172/412 (41%), Gaps = 25/412 (6%) Query: 13 VLTALMLAIFLGALDQTIVAVSLPAISAQFSDVG-LLAWVISGYMVAMTVAVPIYGKLGD 71 +L L + F L++ ++ VSLP I+ F+ WV + +M+ ++ +YGKL D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 72 LYGRRRMILTGISLFTLASIACAMAQDM-PQLVLARVLQGIGAGGMVSVSQAIIGDFVPP 130 G +R++L GI + S+ + L++AR +QG GA ++ ++ ++P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 131 RERGRYQGYFSSMYAAASVAGPVLGGWLTEYLSWRWVFWINLPLGLVALWAIRRALADMP 190 RG+ G S+ A GP +GG + Y+ W ++ I + + + ++ Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL---KK 191 Query: 191 VQRREAQVDYLGAMLLILGLGSLLLGITLVGQGHAWADPAVLALFGCALLGLALFIAHER 250 R + D G +L+ +G+ +L T L + +L +F+ H R Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISF-------LIVS---VLSFLIFVKHIR 241 Query: 251 RCPEPLLPLSLFGNR---VAVLCWAVIFFASFQSISLTMLMPLRYQGITGAGADSAALHL 307 + +P + L N + VLC +IF +S+ M ++ A S + Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI--I 299 Query: 308 LPLAMGLPMGAFTGGRMTSRTGRYKPQILAGALLMPVAIFAMALTPPQSALLSALFMLLT 367 P M + + + GG + R G + G + V+ + ++ + ++ Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLY-VLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFV 358 Query: 368 GIACGLQFPTSLVGT--QSAVASKDIGVATSTTNLFRSLGGAMGVACMSSLL 417 GL F +++ T S++ ++ G S N L G+A + LL Sbjct: 359 --LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.3 bits (84), Expect = 5e-05 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 29/122 (23%) Query: 3 KIAIIGATGRAGSQLLEEALRRGHRVLAI-----ARDPS------TLEGREGVTVKSLDA 51 K + GA G G + + L GH+V+ I D S L + G +D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 52 TDSAALQA--AVAGMDAVLSAAH-----FSTMQPHA-----------IIEPVKRAGVKRL 93 D + A + V + H +S PHA I+E + ++ L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 94 LV 95 L Sbjct: 122 LY 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 8e-16 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 638 RKRILVVDDSLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDG 697 ILV DD +R + + L GYDV + + W + + D DL++TD+ MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 698 IELVTLVRRDQRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAV 753 +L+ +++ LPV+V+S ++ + + GA YL K F L+ + Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK-PFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.4 bits (110), Expect = 1e-07 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 11/173 (6%) Query: 2 KIAIVNDMPLAVEALRRAVALEPAHQVVWVASNGAEAVQRCTEQLPDLILMDLIMPVMDG 61 I + +D L +A L A V + SN A + DL++ D++MP + Sbjct: 5 TILVADDDAAIRTVLNQA--LSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEATRRIMAETPCAIVIVTVDRKQNVHRVFEAMGHGALD-VVDTPALGAGDAREAAAPLL 120 + RI P V+V + +A GA D + L A Sbjct: 63 FDLLPRIKKARPDLPVLVMSA-QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 121 RKILNIGWLVGQQRAPAARSVAAPLREASQRRGLVAIGSSAGGPAALEVLLKG 173 K Q +A ++E + + L +++ G Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLM-------QTDLTLMITG 167
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.2 bits (151), Expect = 6e-13 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 15/162 (9%) Query: 20 VLLVDDQAMIGEAVRRGLANEDNIDFHFCADPHQAVAQAMRIKPTVILQDLIMPGLDGLT 79 +L+ DD A I + + L+ D ++ +++ D++MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 80 LVREYRNNPVTQDIPIIVLSTKEDPLVKSAAFAAGANDYLVKLPDTIELVARIRYHSRSY 139 L+ + D+P++V+S + + A GA DYL K D EL+ I Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA---- 118 Query: 140 LTLLQRDEAYRALRVSQQQLL--DSNLMLQ------RLMNSD 173 L +R + L S M + RLM +D Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 4e-10 Identities = 22/90 (24%), Positives = 39/90 (43%) Query: 27 KTARQGSEQRRQLILDAAMRIVVRDGVRGVRHRAVAAEAGVPLSATTYYFKDIEDLLTDT 86 + +Q +++ RQ ILD A+R+ + GV +A AGV A ++FKD DL ++ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 87 FAQYVERSAAYMAKLWANTEVVLRQLLAQG 116 + + A +L + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREI 92
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 9e-06 Identities = 19/150 (12%), Positives = 52/150 (34%), Gaps = 8/150 (5%) Query: 25 QVQRRQGARQAEQALLEERLNAAQLAQAGLQAQLDASRDEVSDLSEANAVKQAQLAAQSR 84 +V R + + + + + +L +A+ ++ + V++++L Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD--- 239 Query: 85 ELELLQIDRDNARDAAHAWSLERANREAELRRLEAQTARLDAELREQQESHQQRLEDLQE 144 L + A+ A + ELR ++Q ++++E+ +E +Q + + Sbjct: 240 -FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 145 ARDTLRAQFADMATKIFDEREQRFAQTSQQ 174 Q T A+ ++ Sbjct: 299 EILDKLRQ----TTDNIGLLTLELAKNEER 324 Score = 30.6 bits (69), Expect = 0.014 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 16/184 (8%) Query: 56 AQLDASRDEVSDLSEANAVKQAQLAAQSRELELLQIDRDNARDAAHAWSLERANREAELR 115 +L A E L +++ QA+L ++ I+ + + + Sbjct: 125 LKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP------DEPYFQN 178 Query: 116 RLEAQTARLDAELREQQESHQQRLEDLQEARDTLRAQFADMATKIFDEREQRFAQTSQQH 175 E + RL + ++EQ + Q + + D RA+ + +I R + ++ + Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARI--NRYENLSRVEKSR 236 Query: 176 LGQLLDPLKE-----RIQAFEKRVEESYQQEARERFSLGKELERLQQLNLRLSDEATNLT 230 L L + E+ E Y + E +LE+++ L +E +T Sbjct: 237 L-DDFSSLLHKQAIAKHAVLEQ--ENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 231 QALK 234 Q K Sbjct: 294 QLFK 297
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.5 bits (144), Expect = 5e-11 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 4/121 (3%) Query: 1040 VLCVDNEDSILIGMNSLLSRWGCQVWTARNQAECEALLAKGMRPHLALVDYHLDDGETGT 1099 +L D++ +I +N LSR G V N A +A G L + D + D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 1100 GLMGWLRARLGEPVPGVVISADGSKET-IALVHASGLDYLAKPVKPAALRALLNRHLSLA 1158 L+ ++ + +P +V+SA + T I DYL KP L ++ R L+ Sbjct: 64 DLLPRIKKARPD-LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 1159 Q 1159 + Sbjct: 123 K 123
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.0 bits (122), Expect = 3e-09 Identities = 82/394 (20%), Positives = 136/394 (34%), Gaps = 17/394 (4%) Query: 11 TVRLLLTTTFTLTVARALTLPYLVVYLAD--NFQLPISQIGLLIGGALIVASLLSLYGGH 68 + ++L+T V L +P L L D + + G+L+ ++ + G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 69 LVDTLSNHTLVSASTLLFALAFVGAVASRSALPFFFCLVLINLALAVVDIAAKAGFCALL 128 L D ++ S A+ + +A+ L + ++ A A + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYA-IMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 129 PVDERAEVFAIKYTLSNVGYAAGPLLGVAMLELNDHVPFLASALL-GLAMCLAYWRLGDR 187 DERA F G AGP+LG M + H PF A+A L GL + L + Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 188 SLQASAPDKPAAGFGQVALGLARDRRLVCFTVGGVLSAVVFGQFTAYLSQYLVVTSNPAE 247 P + A + AR +V + + GQ A L + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHW 243 Query: 248 AARLIGYLVTTNAVTVIALQ-YLIGRRISRQRLMPWLLAGMGLFIAGLLGFALAGSVLAW 306 A IG + + Q + G +R L+ GM G + A A Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMA 303 Query: 307 CLAMLVFTLGEIIVIPAEYMFIDLIAPEHLRGVYYGA-QNLSNLGAALGPVMVGFALVHL 365 M++ G I +PA + E +G G+ L++L + +GP++ Sbjct: 304 FPIMVLLASGGIG-MPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Query: 366 WP---------GAVFYLLVLSVILAGVFYWLGTR 390 GA YLL L + G++ G R Sbjct: 363 ITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQR 396
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 48.3 bits (115), Expect = 3e-08 Identities = 77/397 (19%), Positives = 138/397 (34%), Gaps = 59/397 (14%) Query: 16 FWACFGGWSLDALEVQMFGLAIPALIAAFSLTKGDAGLISGLTLVTSAIGGWLGGTLSDR 75 W C + L + +++P + F+ ++ ++T +IG + G LSD+ Sbjct: 17 IWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 76 YGRVRTLQWMILWFSFFTFLSAFVTGFYPLL-FVKAMQGFGIGGEWAAGAVLMAETINPK 134 G R L + I+ F + + F+ LL + +QG G A V++A I + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 135 YRGKVMGTVQSAWAVGWGLAVALFMLIYSLVPQEFAWRVMFFVGLLPSLLIIWVRRNVPE 194 RGK G + S A+G G+ I ++ W + L+P + II V + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGP----AIGGMIAHYIHWSYLL---LIPMITIITVPFLMKL 188 Query: 195 PDSFQRLQKEKAIPSSFLQSMA-----------------------GIFRPELLRVT---- 227 R++ I L S+ IF + +VT Sbjct: 189 LKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 228 ----------LLGGLLGLGAHGGYHAVMTWLPTFLKTERNLSVLNSG------GYLAVII 271 ++G L G G ++ +P +K LS G G ++VII Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 272 LAFWCGCVVSGLLIDRIGRRKNILLFALCCVLTVQAYVFFPLTNTQMLFLGFPLGF-FAA 330 + + G+L+DR G + + ++ F T + + + + Sbjct: 309 FGY-----IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS 363 Query: 331 GIPASLGAFFNELYPADVRGAGVGFCYNFGRVLSAVF 367 + + GAG+ NF LS Sbjct: 364 FTKTVISTIVSSSLKQQEAGAGMSL-LNFTSFLSEGT 399
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.016 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 612 AKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD---EIAQLRERL 668 +A E Y+++L +I I +E+ + + E +LR I L L Sbjct: 262 VEAVNELRVYKSQL---EQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLEL 318 Query: 669 IS 670 Sbjct: 319 AK 320
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 102 bits (256), Expect = 2e-25 Identities = 85/412 (20%), Positives = 169/412 (41%), Gaps = 24/412 (5%) Query: 18 WIAVMSVMLGAFMAVLDIQITNSSLKDIQGALSATLEEGSWISTSYLVAEIIMIPLTAWL 77 W+ ++S F +VL+ + N SL DI + +W++T++++ I + L Sbjct: 18 WLCILS-----FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 78 VQLLSARRLAVWVSGGFLLSSLLCSMAWNLESMILF-RALQGFTGGALIPLAFTLTLIKL 136 L +RL ++ S++ + + S+++ R +QG A L + + Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI 132 Query: 137 PEHHRAKGMAMFAMTATFAPSIGPTLGGWLTENWGWEYIFYINIPPGLLMIAGLLYGLEK 196 P+ +R K + +GP +GG + W Y+ I + ++ + L+ L+K Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT-IITVPFLMKLLKK 191 Query: 197 KEAHWELLKSTDYAGIVTLGLGLGCLQVFLEEGHRKDWLESHLIVGLGSVALVSLITFVI 256 + D GI+ + +G+ +F + S LI V+++S + FV Sbjct: 192 EVRIKGHF---DIKGIILMSVGIVFFMLFT-----TSYSISFLI-----VSVLSFLIFVK 238 Query: 257 LQFSKPHPLINLRILGNRNFGLSSIASLGMGVGLYGSIYLLPLYLAQVQGYNALQIGEVI 316 P ++ + N F + + + + G + ++P + V + +IG VI Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI 298 Query: 317 MWMG-IPQLFLIPLVPQLMKVISPKVLCALGFCLFGAASFGSGVLNPDFAGPQFNHIQII 375 ++ G + + + L+ P + +G + + L F I I+ Sbjct: 299 IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL--LETTSWFMTIIIV 356 Query: 376 RALG-QPMIMVTISLIATAYIQQQDAGSASSLFNILRNLGGAIGIALLATLL 426 LG IS I ++ ++QQ+AG+ SL N L GIA++ LL Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 152 bits (386), Expect = 6e-44 Identities = 67/411 (16%), Positives = 139/411 (33%), Gaps = 94/411 (22%) Query: 43 RRLTLFFALVAIIALAFLGHWYFKGRFYESTDNAYVQGEIT------RISSQLGARIETV 96 R + F +IA G+ E A G++T I + ++ + Sbjct: 58 RLVAYFIMGFLVIAFI----LSVLGQ-VEIV--ATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 97 PVEDNQHVSKGDLLVR------------LEAADFELAVERAR------------------ 126 V++ + V KGD+L++ +++ + +E+ R Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 127 ----------------------AALATREAEYAQAQSRLTQQGSLIAAGQAQLAATQATF 164 +T + + Q + L ++ + A++ + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 165 DRSRLDLSRAEKLRKPGFVS-------EERVTTLSADSHVAGSQVDKARADLQSQRQQVT 217 + L L ++ E + + V SQ+++ +++ S +++ Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 218 ALNAELKRL--------DAQIANARTDLAQAELNLTRCEIHAPISGTIGQRNAR-NGQVV 268 + K I +LA+ E I AP+S + Q G VV Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 269 QAGAYLLSIVPDED-IWVQANFKETQIGRMHPGQRAELLFDSYPDT---PIEGRVDSLFA 324 L+ IVP++D + V A + IG ++ GQ A + +++P T + G+V ++ Sbjct: 351 TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Query: 325 ASGAQFSLLPPDNATGNFTKVVQRIPIKLTFHADNPLHGRIRPGMSVTATV 375 + D G V+ I + + + GM+VTA + Sbjct: 411 DA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAVTAEI 452
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.0 bits (119), Expect = 4e-10 Identities = 22/85 (25%), Positives = 33/85 (38%) Query: 1 MSDKKSRTRERILEAARTALIQHGPAEPSVSQVMGAAGLTVGGFYAHFDSKDELMLEAFR 60 + TR+ IL+ A Q G + S+ ++ AAG+T G Y HF K +L E + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 QLLGERRALLAQIDPNLDGAGRRAL 85 L + G L Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVL 89
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.4 bits (66), Expect = 0.020 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Query: 208 WRR-CREVSGAEDIMLGRGLVSRPDLGLQIAAARDGRDYQPMSWHDLLPLLREFW----- 261 W+ R +D V P L + + P++ + +PLL W Sbjct: 45 WQAEYRSYFNPDDEG-----VDEPPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRC 99 Query: 262 RQAQAKLSPRY 272 R QA +S RY Sbjct: 100 RGCQAPISARY 110
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.0 bits (83), Expect = 3e-04 Identities = 11/102 (10%), Positives = 32/102 (31%) Query: 367 VSKAEALQRAQVARYRGVALSALKDVRQALARYDGERQRLQALDAALAHSQHSFALAQGN 426 V + +L + Q + ++ ++ + A R+ + + Sbjct: 184 VLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243 Query: 427 YRAGTVDGLALLDSEREMISLRANHTEARGRLAQAQVNLFRA 468 + A+L+ E + + + +L Q + + A Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 8e-04 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 82 DDQPLGFVGFNEN-----HVEMLFVDPARHRQGIGRALLDFGRQ---SRSAMSVDVNEQN 133 ++ +G + N +E + V ++G+G ALL + + + Q+ Sbjct: 73 ENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132 Query: 134 PQATA--FYQHYGF 145 +A FY + F Sbjct: 133 INISACHFYAKHHF 146
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 133 bits (335), Expect = 3e-38 Identities = 80/365 (21%), Positives = 129/365 (35%), Gaps = 74/365 (20%) Query: 15 VAATSIGAMAQGQGAVETEIFY------KKEFFDSQRDFKNDGN-------LFGGSIGYF 61 +A G Q A + +Y ++ D+ F N+ G GY Sbjct: 8 IAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTG--FINNNGPTHENQLGAGAFGGYQ 65 Query: 62 LTDDVELRLGYDEVHNARGEDGKN-----IKGSNTALDAVYHFNNPYDAIRPYVSAGFSH 116 + V +GYD + + +G Y + D Y G Sbjct: 66 VNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDI---YTRLGGMV 122 Query: 117 -QSLGQTGRGGRDHSTFAN--VGAGAKWYITDMFYARAGVEAQYNI-DQGDTEWAP---- 168 ++ ++ G++H T + G ++ IT R + NI D P Sbjct: 123 WRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGM 182 Query: 169 -SVGVGLNFGGSPKQAEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTVDADGCPAVA 227 S+GV FG APAP Sbjct: 183 LSLGVSYRFGQGEAAPVVAPAPAPAP------------------------------EVQT 212 Query: 228 EVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMKQY--PQTTTVVEGHTDSVGPDAYNQK 285 + ++ DV F+F+K+ +KP + L + + VV G+TD +G DAYNQ Sbjct: 213 KHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQG 272 Query: 286 LSERRANAVKQVLTQQYGVESSRVDSVGYGETRPVADNATEEGR---------AVNRRVE 336 LSERRA +V L + G+ + ++ + G GE+ PV N + + A +RRVE Sbjct: 273 LSERRAQSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331 Query: 337 AQVEA 341 +V+ Sbjct: 332 IEVKG 336
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 37.8 bits (87), Expect = 1e-04 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Query: 362 VARQLLQAVGVLHRRNLLHRDIKPDNLHLGR-DGQLRLLDFGLAYCPGLSEDPLHELPG- 419 +A +LL L + ++H DIKP N+ R G+ ++D GL G E P Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSG-------EQPKG 302 Query: 420 -TPSYIAPEAFDGH-PPSPRQDLYAVGVTLYHLLTGHYPYGEVEAFQRPRF 468 T S+ APE G+ S + D++ V TL H + G E++ Q RF Sbjct: 303 FTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRF 353
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.7 bits (90), Expect = 3e-05 Identities = 80/415 (19%), Positives = 142/415 (34%), Gaps = 81/415 (19%) Query: 46 IAADLQLSAQQRGLMVATPILAGAILRFAMGVLVDRLSPKTAGLIGQVVVIVALAAAWHL 105 IA D + +L +I G L D+L K L G ++I + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFG--IIINCFGSVIGF 97 Query: 106 GVHSYEQALLLGVFL-GFAGASF-AVSLPLASQWYPPQHQGKAMG-IAGAGNSGTVFAAL 162 HS+ L++ F+ G A+F A+ + + +++ P +++GKA G I G Sbjct: 98 VGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157 Query: 163 LAPALAAGFGWNNVFGFALIPLSLALVVFALLARNAPQRPKPKAMADYLKAL-------- 214 + +A W+ + LIP+ + V L + + + K D + Sbjct: 158 IGGMIAHYIHWSYLL---LIPMITIITVP-FLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 215 ----GDRDSWWFMFFYSVTFGGFI------------------------------------ 234 S F+ ++F F+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVA 273 Query: 235 GLASALPGYFSDQYGLSPVTAGYYTAACVFAGSL----MRPLGGALADRFGGIRTLLGMY 290 G S +P D + LS G + +F G++ +GG L DR G + L Sbjct: 274 GFVSMVPYMMKDVHQLSTAEIG---SVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGV 330 Query: 291 GVAAICIAAVGFNLPSAAAALALFVSAMLG-LGAGNGAVFQLVPQRFR-QEIGVMTGLI- 347 ++ F L + + + + + +LG L + +V + QE G L+ Sbjct: 331 TFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLN 390 Query: 348 -----GMAGGIG--GFLLAAGL-------GTIKQHTGDYQLGLWLFASLGLLAWF 388 GI G LL+ L + Q T Y L LF+ + +++W Sbjct: 391 FTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWL 445
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.4 bits (118), Expect = 2e-09 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 3 RILLIDDTQSKLGRLRAALSEAGFEIIEAPDLTIDLPACVETVRPDVVLIDTDSPDRDVM 62 IL+ DD + L ALS AG+++ + L + D+V+ D PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAA-TLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EQVVLVSRDQPR-PIVLFTDEHDPGMMRQAIQAGVSAYIVEGIHAARLQPILDVAMARFE 121 + + + + +P P+++ + ++ +A + G Y+ + L I+ A+A + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 SDQA 125 + Sbjct: 124 RRPS 127
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 9e-07 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 13/136 (9%) Query: 140 ASQQISDLRSEQQAAQRRLELARLTFQREQQLWQERISAEQDYLQARQALQEAEIALANA 199 A ++ +S+ + + + A+ +Q QL++ I + L E+A Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 200 RQKVAAVGPAGAGNRYELRAPFDAVVVE-KHLTVGEVVDETSNAFTLS-DLSRVWATFAV 257 RQ +RAP V + K T G VV + + + T V Sbjct: 324 RQ-----------QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 258 APRDLGKVVTGREVTV 273 +D+G + G+ + Sbjct: 373 QNKDIGFINVGQNAII 388 Score = 35.6 bits (82), Expect = 4e-04 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 13/131 (9%) Query: 79 AGIQLAAAGPRELGTAISFPGEIRFDEDRTAHVVPRVPGVVEAVQAELGQAVKRGQVLAV 138 I + ++ + G++ + P +V+ + + G++V++G VL Sbjct: 68 LVIAFILSVLGQVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLK 126 Query: 139 IASQQISDLRSEQQAAQRRLELARLTFQREQ---------QLWQERISAEQDYLQARQAL 189 + + ++ Q L ARL R Q +L + ++ E + + Sbjct: 127 LTALG---AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 190 QEAEIALANAR 200 +L + Sbjct: 184 VLRLTSLIKEQ 194
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 780 bits (2016), Expect = 0.0 Identities = 228/1062 (21%), Positives = 427/1062 (40%), Gaps = 55/1062 (5%) Query: 5 LIQFAIEQRLVVMLAVVLMAAVGIHSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64 + F I + + + +++ G + +LP+ P I V ++ PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFAIETAMAGLPGLKQTRSLSRS-GLSQVTVIFDDGTDIFFARQLVNERLQVAREQLPE 123 +T IE M G+ L S S S G +T+ F GTD A+ V +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GIEAGMGPISTGLGEIFLWTVEAQEGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 ++ + +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 VNSIGGHAKQYLIAPEPKRLAAYKLTLNDLIAALERNNANIGAGYI------ERNGEQLL 237 V G I + L YKLT D+I L+ N I AG + Sbjct: 175 VQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVASAEDIANIVI-SSVDGTPIRVSHVAQVGLGEELRSGAATENGREVVLGTVFM 296 I A + + E+ + + + DG+ +R+ VA+V LG E + A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLVEINRNLPKGVVAVTVYDRTNLVEKAIATVKKNLIEGAILVIA 356 G N+ ++A+ AKL E+ P+G+ + YD T V+ +I V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 VLFLFLGNIRAALITAMVIPLSMLFTFTGMFSNKVSANLMSLG--ALDFGIIVDGAVVIV 414 V++LFL N+RA LI + +P+ +L TF + + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQQRHGRMLTRGERFHEVFAAAREARRPLIYGQLIIMVVYLPIFALTGVEG 474 EN R + + + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMEDKLP---------PKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVMALLGAMILSVTFVPAAIALFVTGKVKEEEGL----------VMRTARQ 524 ++ + T+V A+ ++++++ PA A + E + Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYAPVLAWVLGRRKLACAAAAALVLLSGVMASRMGSEFIPSLSEGDFALQALRVPGTSLS 584 Y + +LG A +V V+ R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 585 QSVD-MQQRLEQAIIAQVPEVERVFARTGTAEIASDPMPPNISDAYVMLRPREQWVDPGK 643 ++ + Q + + + VE VF G + N A+V L+P E+ Sbjct: 585 RTQKVLDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDEN 641 Query: 644 PRDELIAQVQRAAASVPGSNYELSQPIQLRFNELISGVRSDVA-VKLFGDDMEVLNRTAA 702 + +I + + + EL + D + G + L + Sbjct: 642 SAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQARN 699 Query: 703 QIAASLQGVPGA-SEVKVEQTTGLPVLTIDIDRDKAARHGLNVGDVQDAIAIAVGGRTAG 761 Q+ P + V+ +++D++KA G+++ D+ I+ A+GG Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 762 TLYEGDRRFDMVVRLSETLRTDVDGLASLLIPVPASAAERAGQIGFIPLSQVATLNLQLG 821 + R + V+ R + + L + G+ +P S T + G Sbjct: 760 DFIDRGRVKKLYVQADAKFRMLPEDVDKLYVR------SANGE--MVPFSAFTTSHWVYG 811 Query: 822 PNQVSREDGKRVVVVSANVRGRDLGSFVQEAEQALIDQVQVPPGYWTRWGGQFEQLQSAA 881 ++ R +G + + + L ++P G W G Q + + Sbjct: 812 SPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSG 869 Query: 882 ERLQVVVPVALLLVMALLLMMFNNLRDGLLVFTGIPFALTGGVLALWARDIPLSISAGVG 941 + +V ++ ++V L ++ + + V +P + G +LA + + VG Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929 Query: 942 FIALSGVAVLNGLVMIAFIRGLRE-EGRTLRAAVEEGALTRLRPVLMTALVASLGFIPMA 1000 + G++ N ++++ F + L E EG+ + A RLRP+LMT+L LG +P+A Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 1001 LATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQWAYRR 1042 ++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 67/321 (20%), Positives = 111/321 (34%), Gaps = 58/321 (18%) Query: 52 VALLKTFAVFAVAFALRPLGGIVFGALGDRLGRKRILSLTILLMAGSTTLIGLLPTYASI 111 LL +A+ A A P+ G AL DR GR+ +L +++ A ++ P Sbjct: 46 GILLALYALMQFACA--PVLG----ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL--- 96 Query: 112 GLAAPALLTLARCLQGFSAGGEYAGACAYLMEHAPDDKRAFYGSFVPVSTFSAFACAAVI 171 +L + R + G + G A A AY+ + D+RA + F+ V+ Sbjct: 97 -----WVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 172 AYGLEASLSTEAMNAWGWRIPFLIAAPLGLVGLYLRWRMEETPAFREAVAQGKEHEHSPL 231 GL S PF AA L + + E+ + E PL Sbjct: 151 G-GLMGGFSP--------HAPFFAAAALNGLNFLTGCFL-----LPES----HKGERRPL 192 Query: 232 KETLRHHGRVIRNLGAFISLTALSFYMFTTYFATYLQLVGNLTRAQSLLVT--------- 282 + + R + AL F +QLVG + A ++ Sbjct: 193 RREALNPLASFRWARGMTVVAALMAVFFI------MQLVGQVPAALWVIFGEDRFHWDAT 246 Query: 283 TVALLFAAVGCP-------LAGAFSDRVGRRKTIGFTCLWVMLCVFPAYWLASSGSMSGA 335 T+ + AA G + G + R+G R+ + + LA + A Sbjct: 247 TIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI---LLAFATRGWMA 303 Query: 336 LLGVILLAVGALCSGVVTAAL 356 ++LLA G + + A L Sbjct: 304 FPIMVLLASGGIGMPALQAML 324
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.045 Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 40 LGIVGPNGSGKSSLLKLLAGLR 61 + + G G GKS+L+ L GL Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD 620
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 75.3 bits (185), Expect = 6e-16 Identities = 34/209 (16%), Positives = 80/209 (38%), Gaps = 9/209 (4%) Query: 590 TTINRVVDAAKAFRSDYPQPGLSIRLASGNAGVLAAINEEVEKSETPMLLYVYAAIALLV 649 T + + +PQ G+ + + EV K+ L + L++ Sbjct: 301 DTAKAIKAKLAELQPFFPQ-GMKVLYPYDTTPFVQLSIHEVVKT----LFEAIMLVFLVM 355 Query: 650 FAVYRDLRAVLVCCLPLTIGTFIGYWFMKELQIGLTIATLPVMVLAVGIGVDYAFYIYNR 709 + +++RA L+ + + + + + + T+ MVLA+G+ VD A + Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 710 LQLHLAHGQSITK-AVEHALLEVGVATIFTAITLAVGVATWAF---SELKFQADMGKLLA 765 ++ + + K A E ++ ++ A + A+ L+ AF S + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 766 FMFIVNMVMAMTVLPAFAVWLERVFPRKR 794 +++++A+ + PA L + + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEH 504 Score = 41.7 bits (98), Expect = 1e-05 Identities = 38/243 (15%), Positives = 84/243 (34%), Gaps = 18/243 (7%) Query: 208 KEIRQQFEDGEFEVQIIGFAKQIGDIADGASAVLEFCLLALLLTAGAVYWYCHSLRFTLL 267 E++ F G ++++ + V++ A++L +Y + ++R TL+ Sbjct: 311 AELQPFFPQG---MKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLI 367 Query: 268 ALVCSLASLVWQFGSLRLLGYGLDPLAVLVPFLVFAIGVSHGVQQINFIVREIAIGKS-- 325 + L+ F L GY ++ L + L + V + + + R + K Sbjct: 368 PTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPP 427 Query: 326 --AEEAARSSFTGLLIPGTLALVTALVSFVTLLLIPIPMVREVAITASLGVAYKIITNLL 383 A E + S G L+ + L + + R+ +IT +A ++ L+ Sbjct: 428 KEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALI 487 Query: 384 MLPLLASMLRVDDRYAAAQEVSRQRRTRWLRGLARLAEW------RNAQWVLGVALVVFL 437 + P L + L + E + + + + +LG L Sbjct: 488 LTPALCATL----LKPVSAEHHENKG-GFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 438 VAI 440 + Sbjct: 543 IYA 545
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.015 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 9/113 (7%) Query: 276 RAAIGSAGAGMNGFRRSHLEALTTQRLMGRLAGSPAVATIDQVRMVSLMTQDARAARQFV 335 R + R +E + + A A + + + ++ R Sbjct: 364 RLTALYPQDVI---TREIIE-NELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 336 LSTLGRLATEPTVL-----QHSLHAFLANGCNITQTAEVLGTHRNTLLRRLER 383 L VL L A A N + A++LG +RNTL +++ Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.8 bits (90), Expect = 5e-06 Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 16/145 (11%) Query: 29 ASMGELAVLAGISRATLHRYCGTRDNL-DSQLEQHAKDTLMHILDNSGTLACREPLAALR 87 S+GE+A AG++R ++ + + +L E + L+ +PL+ LR Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFP-GDPLSVLR 90 Query: 88 QLIHAHLAQGELIA--FLASRYPVHMSVQHDLRFYLERLD------------ALFASGQR 133 +++ L L H +++ Sbjct: 91 EILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIE 150 Query: 134 QGVFRADVTAALLTEMFVSLLHGMV 158 + AD+ + + G++ Sbjct: 151 AKMLPADLMTRRAAIIMRGYISGLM 175
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 14/161 (8%) Query: 37 PVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPGIVLHKRFEEGADVKAGDVLFQIDP 96 VEIV A ++ + R E++ IV +EG V+ GDVL ++ Sbjct: 79 QVEIVATANGKLTHSG---------RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTA 129 Query: 97 APFKAALARAEADLARAQAVQQEAQARVKRYE--PLVKIEAVSQQDFDSATAELRSAGAA 154 +A + ++ L +A+ Q Q + E L +++ + F + + E + Sbjct: 130 LGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTS 189 Query: 155 VRSAQADV---QAARLNLGYATVTAPISGRIGRALATEGAL 192 + Q Q + L A + R E Sbjct: 190 LIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Score = 42.5 bits (100), Expect = 2e-06 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 4/103 (3%) Query: 100 KAALARAEADLARAQAVQQEAQARVKRYEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQ 159 + A +L ++ Q Q + + + V+Q + +LR + Sbjct: 258 ENKYVEAVNELRVYKS--QLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLT 315 Query: 160 ADVQAARLNLGYATVTAPISGRI-GRALATEGALVGQGEATLM 201 ++ + + AP+S ++ + TEG +V E TLM Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLM 357
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1138 bits (2946), Expect = 0.0 Identities = 512/1034 (49%), Positives = 701/1034 (67%), Gaps = 7/1034 (0%) Query: 1 MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60 M+ FFI RP FAWV+A+ + +AG L I LPVAQYP +APP +S++A+YPGA A+ + ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120 VT +IEQ++NG L+Y ST++S G + +TF+ GTDPD+AQV VQN+L+ A +PQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180 V QG+ VE++SS +L++ S ++DY A N+ + L R+ GVG +Q F Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGT-TQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 181 SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240 ++ AMR+W+D L Y L+ D+ + ++ QN Q+ AG G TP Q+L A++ Q Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300 PE F + LR N DGS VRL DVAR+ +G ENYN+ AR+NG PA ++LA GANA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 301 IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360 + TA +K +LAEL FFP+G++ PYDT+ FV ++I +V+ TL EA++LVFLVM+LFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 361 QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420 QN+R TL+P+I VPV LLGT I+ G+S+N +TMFGMVLAIG+LVDDAIVVVENVER+ Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 421 MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480 M E+ L P EAT K+M Q+ GA++GI +VL+AVF+P+AF GS G IY+QFS+++ ++ Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 481 FSGFLALTFTPALCATLLKPVPHGHHE-KAGFFGAFNRGFARVTERYSLLNSELVARAGR 539 S +AL TPALCATLLKPV HHE K GFFG FN F Y+ +++ GR Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 540 WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLM- 598 ++L Y I+ + +LRLP +F+P ED G + +QLP GA++ RT + + + + Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 599 -SRDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKA-QSAEAETAAINAQFAANGD 656 + V + F V+GFSFSGQ NA +AF + K W +R+ SAEA + D Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 657 GAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMM-EG 715 G + P I LG + GF L+D+ GLG +AL AR+QLL A +P L ++ G Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 716 LAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGER 775 L + Q +L +D+EKA+ALGVS IN T++TA G +NDF + GR +++ VQA+ R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 776 MTPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQA 835 M PE V +LY +ANGE VPFSAF T+ W G +L RYNG PS+ I G+A+PG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 836 MAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLT 895 MA ME L S+LP GIGY WTG+SYQE++S QA +L A++ +VVFL L ALYESW+IP++ Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 896 VMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEK-GYSL 954 VML+VP+G +G + A TL NDVYF VGL+T IGL+AKNAILIVEFAK+L EK G + Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 955 CDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVV 1014 +A + A R+R RPI+MTS+AFILGV+PLAI++GAG+ +Q A+G GV+GGM+SATLL + Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1015 FVPVCFVWVLTLLK 1028 FVPV FV + K Sbjct: 1020 FVPVFFVVIRRCFK 1033 Score = 84.9 bits (210), Expect = 9e-19 Identities = 88/528 (16%), Positives = 176/528 (33%), Gaps = 60/528 (11%) Query: 540 WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLP-PGAS-RVRTDHTAEALEKFL 597 W+LA + +++ + L+LP A P + V V PGA + D + +E+ + Sbjct: 13 WVLA-IILMMAGALAILQLPVAQYP--TIAPPAVSVSANYPGADAQTVQDTVTQVIEQNM 69 Query: 598 MSRDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQS-AEAETAAINAQFAANGD 656 D + +S S S L TF+ + D AQ + + Sbjct: 70 NGIDNLMY---MSSTSDSAGSVTITL---TFQSGTDPDIAQVQVQNKLQLATPLLPQ--- 120 Query: 657 GAITAVMPPPIDGLGNSGGFALRL--------MDRGGLGREALLAARDQLLARANGNPVI 708 V I +S + + + + +D L Sbjct: 121 ----EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTL---------- 166 Query: 709 LYAMMEGLAEAP------QLRLHIDREKARALGVSFEAINSTLATA---FGSAVINDFTN 759 + + G+ + +R+ +D + ++ + + L + + Sbjct: 167 --SRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPA 224 Query: 760 AGRQQRVVVQAEQGERMTPESVLRLY-APNANGEQVPFS--AFVTTQWEEGPVQLVRYNG 816 QQ Q PE ++ N++G V A V E + R NG Sbjct: 225 LPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN-YNVIARING 283 Query: 817 YPSIRIAGDASPGHST----GQAMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLF 872 P+ + + G + A++ L P G+ + V + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP-YDTTPFVQLSIHEVVK 342 Query: 873 AL--AILVVFLLLVALYESWAIPLTVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITII 930 L AI++VFL++ ++ L + VP+ LG + G + G++ I Sbjct: 343 TLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 402 Query: 931 GLAAKNAILIVE-FAKELWEKGYSLCDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGA 989 GL +AI++VE + + E +A ++ +V +M +P+A G+ Sbjct: 403 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 990 GAASQRAIGTGVIGGMLSATLLGVVFVPVCFVWVLTLLKRKPSPVQQA 1037 A R ++ M + L+ ++ P +L + + + Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 32.7 bits (74), Expect = 6e-04 Identities = 19/162 (11%), Positives = 56/162 (34%), Gaps = 9/162 (5%) Query: 4 PTDERLLKALADAIVVHP--RATLKELAEAAGVSKATLHRFCGTRDNLVNMLESYGDQVL 61 T + +L +L E+A+AAGV++ ++ + +L + + + + Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 62 TQVIGNADLHGSDPTAALHRLIVEHL-------KHREMMIFLLFQYRPDSFDDSETNRPW 114 ++ ++ R I+ H+ + R +++ ++F + + + Sbjct: 71 GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 115 RAYADALDAFFLRGQQAGAFRIDISAAIFTEMFLSMVYGIVD 156 R + + + A + T ++ G + Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYIS 172
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.0 bits (75), Expect = 0.003 Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 37/223 (16%) Query: 316 TMTNSIQEVAQRSEQASEQASAAARQANEA-RHNIDSLSLSIGD----LGNSVLSSVQAM 370 T+ ++ Q A + A + A ++A E R+ + L L I G+S+ V+ Sbjct: 12 TLQSAKQSAANKLHSAGQSTKDALKKAAEQTRNAGNRLILLIPKDYKGQGSSLNDLVRTA 71 Query: 371 EQLEAETQHVGSVLTVI--RSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQK 428 ++L E Q+ T I + L+ L RG + A ++ L QK Sbjct: 72 DELGIEVQYDEKNGTAITKQVFGTAEKLIGLTE-----------RGVTIFAPQLDKLLQK 120 Query: 429 --------------TTASTAQIQDIIQRLQNSASSVLHAMNLN----GEKARSSIQRSEH 470 + + I+ QN + L +M ++ +K+ ++ SE Sbjct: 121 YQKAGNILGGGAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSEL 180 Query: 471 ATQTLEAITGAVRQIDELNAGIARFTNEQIGLSRSIQQDTERL 513 A ++E I V + LN + F+ +Q+ S+ +T+ L Sbjct: 181 AKASIELINQLVDTVASLNNNVNSFS-QQLNTLGSVLSNTKHL 222
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 73.9 bits (181), Expect = 3e-18 Identities = 27/212 (12%), Positives = 69/212 (32%), Gaps = 17/212 (8%) Query: 24 LARRGRPVGDRDAKRSELLAAAIAVIAQEGYAGATMRKVAQHAGCTTGAVTYYFANKEEM 83 +AR+ + + +L A+ + +Q+G + ++ ++A+ AG T GA+ ++F +K ++ Sbjct: 1 MARKTKQEAQETRQH--ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL 58 Query: 84 VSAVAQTLFDKVDALLDIDLDQV---DIKSLIEQWHQWISLD-EPGNWLAWLQLLTH--- 136 S + + + L + + L E + ++++ H Sbjct: 59 FSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCE 118 Query: 137 -ARHQPAFASVIKQRYTNFREVATSVLEAGQRQGQIREDVPADVLADHIAAFSDG----W 191 + + L+ + D+ A + + G W Sbjct: 119 FVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENW 178 Query: 192 LMMLPFESEPVSAERGKALIDAFIVMISPPKT 223 L + + + + M T Sbjct: 179 LF---APQSFDLKKEARDYVAILLEMYLLCPT 207
>PF05043#Transcriptional activator Length = 493 Score = 28.8 bits (64), Expect = 0.031 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 1 MNRNDLRRVDLNLLIVFETLMHERSVTRA--AEKLFLGQPAISAALSRLRNLFDDPLFVR 58 +++ R+++L L ++FE H+R R+ AE L + A+ LS +++ F D +F Sbjct: 5 LSKKSHRQLEL-LELLFE---HKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHS 60 Query: 59 TGRSM 63 + + Sbjct: 61 STNGI 65
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 1e-05 Identities = 31/197 (15%), Positives = 72/197 (36%), Gaps = 18/197 (9%) Query: 262 QMFRDRQIWLAIAVYFVHQITIYTVIFFLPGIIGTYAALSPFQVGLLTAVPWIAAAIGAA 321 + ++ + + + T+ + +P ++ LS ++G + P + I Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310 Query: 322 TLPRLATSPRRCRTLLFLGLLTMAAGLLLASLT---NSFIGLIGFSLTALMLFVVQSIIF 378 + + R +L +G+ ++ L AS S+ I L +++I Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370 Query: 379 VFPSSRLSGSALAAGLAFVTTCGLFGGFVGPSVMGL---------------IEQTTGSTR 423 SS L AG++ + G +++G ++Q+T Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYS 430 Query: 424 NGLWIIAALLVCAALVS 440 N L + + ++V + LV+ Sbjct: 431 NLLLLFSGIIVISWLVT 447
>BORPETOXINA#Bordetella pertussis toxin A subunit signature. Length = 269 Score = 29.8 bits (66), Expect = 0.023 Identities = 15/38 (39%), Positives = 20/38 (52%) Query: 247 VGAYYQFEWEANRLPAAGSYFSTDDFFGDGAERMFVGA 284 +G Y+ + N AA SYF D +GD A R+ GA Sbjct: 119 IGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGA 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 60.2 bits (146), Expect = 3e-11 Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 9/175 (5%) Query: 618 IEAATNQVVKQANRDMLWWVYGAVIVLCLVTFRSWRAVLCAVLPLVLTSILCEALMVALG 677 ++ + ++VVK L+ V ++ + ++ RA L + + + + A++ A G Sbjct: 333 VQLSIHEVVKT-----LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 678 IGVKVATLPVIALGVGIGVDYALYVM-SIVLAQLRQGASLSQAYYRALLFTGKVVMLTGI 736 + T+ + L +G+ VD A+ V+ ++ + +A +++ ++ + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAM 447 Query: 737 TLAIGVGTWIF---SPIKFQADMGVLLAFMFVWNMVGALILLPALAYFLLPHRKA 788 L+ F S + + +++ ALIL PAL LL A Sbjct: 448 VLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSA 502 Score = 35.6 bits (82), Expect = 0.001 Identities = 25/154 (16%), Positives = 65/154 (42%), Gaps = 12/154 (7%) Query: 247 AIAITAAVLYWYTRCVRSTALVVVCSLVAVIWQLGLLPLLGYALDPYSVLVPFLVFAIGM 306 AI + V+Y + + +R+T + + V ++ +L GY+++ ++ +V AIG+ Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG--MVLAIGL 404 Query: 307 SHGAQKMNGIMQDIGRGMH-----RLVAARFTFRRLFLAGLTALLCDAVGFAVLMIIQIQ 361 + +++++ R M A + ++ A + + + F + Sbjct: 405 LVDDAIV--VVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 362 ---VIQDLAVIASLGVAVLIFTNLILLPVLLSYV 392 + + ++ +A+ + LIL P L + + Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATL 496
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 72.9 bits (179), Expect = 3e-16 Identities = 92/398 (23%), Positives = 150/398 (37%), Gaps = 19/398 (4%) Query: 11 QAALLLFGSCLPVLGAVLIAPVLPRMHAYFAETPGVAVLVPVALTLPALVIALLAPLAGV 70 ++L L +G LI PVLP + + V + L L AL+ AP+ G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 71 LADRVGRRALLLASMLLYSLCGLLPLWLDSLVLIVASRAGIGLAEAGIMTCCTTLMGDYF 130 L+DR GRR +LL S+ ++ + L ++ R G+ A + D Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADIT 124 Query: 131 DGQRRARLFALQMVVTSLAAALFMGVGGALGESDWRTPFTLYAVGALCLPLMALLLW--- 187 DG RAR F +GG +G PF A L L Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 188 ---EPRACQAASEASVDSRFPWAALTPLYLLTVLA-GVSLFIVPVQAGYVL---QLLHID 240 E R + + + S +T + L + + L A +V+ H D Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 241 APRQVGLAM-GANQLGVLAGALAF-RLLARLPAGRLLAMGFATAGLGGGLMALASSHAPV 298 +G+++ L LA A+ + ARL R L +G G G L+A A + + Sbjct: 245 -ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA-TRGWM 302 Query: 299 VLAVLINGLGVGLLLPTLITLVMQQVGFDQRGRATGGFTSAIFAGEFVSPLIVLALTAGV 358 +++ G+ +P L ++ +QV +++G+ G + V PL+ A+ Sbjct: 303 AFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI---Y 359 Query: 359 ATHLPHALLLVAIGQLLLAPVCLSLMRHRRAVTVAGAR 396 A + I L +CL +R R + AG R Sbjct: 360 AASITTWNGWAWIAGAALYLLCLPALR-RGLWSGAGQR 396
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 75.2 bits (185), Expect = 2e-17 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 22/167 (13%) Query: 1 MRVMVTGANGFVGRQLVQRLLDLGELRGRRIEALLVLDQALDGLPEDARLRR-------- 52 M+ +VTGA GF+G + +RLL+ G ++ + L+ D + ARL Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLE----AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQF 56 Query: 53 HHGSVTDAALLRRVLADG-VDVVFHLVSVPGGAAETQYERGY-QVNLQASLELLDQLRNP 110 H + D + + A G + VF + Y NL L +L+ R+ Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH- 115 Query: 111 LCPPVLVYASSVAVYGG--KLPTRMDEG--QPASPQLSYAAHKRMVE 153 L+YASS +VYG K+P D+ P S YAA K+ E Sbjct: 116 NKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSL---YAATKKANE 159
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 42.2 bits (99), Expect = 1e-07 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 73 STWLGRNGIYLEDLYVTPEHRGDGAGRQLLQHIAREAVANNCGRLEWSVLDWNEPAIGFY 132 S W G +ED+ V ++R G G LL A N+ L D N A FY Sbjct: 84 SNWNGY--ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFY 141 Query: 133 QKLG 136 K Sbjct: 142 AKHH 145
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 29.7 bits (66), Expect = 0.011 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 53 SAELHLEQIIAAMRSAHEKGQDVARVHSG-----DPSLYGAIGEQI 93 +AEL + +I A + H +H D +LYG E+I Sbjct: 161 TAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYGYTDEEI 206
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 5e-15 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 2 TTVLIVDDHPIVRLSLRLLLERERFHVIGEVGNGSEVAQVARELRPDVVILDIGLPGLDG 61 T+L+ DD +R L L R + V N + + + D+V+ D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 MEVIKRLQSLEPVPKFMVLTGQATDLYVRRCLDAGIGAFVTK 103 +++ R++ P +V++ Q T + + + G ++ K Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.5 bits (144), Expect = 4e-11 Identities = 21/66 (31%), Positives = 29/66 (43%) Query: 848 ILVVDDYPANLLLLERQLQTLGHHVTLAENGEIALARWQEARFDLVITDCSMPVMDGHEL 907 ILV DD A +L + L G+ V + N DLV+TD MP + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 908 TRRIRS 913 RI+ Sbjct: 66 LPRIKK 71
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 461 bits (1189), Expect = e-162 Identities = 168/491 (34%), Positives = 256/491 (52%), Gaps = 35/491 (7%) Query: 4 SILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHD 63 +ILV +DD + + LS GY+V + +A I D V+TD +P + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LLRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERM 123 LL + PDL V++M+ A++A ++GA+ YL KP L EL + +ALA + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 ERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGT 183 + E L+G S M + L +++ + ++I GE+GT Sbjct: 125 RP-----SKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL--------TLMITGESGT 171 Query: 184 GKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAAD 243 GKELVARALH G R GPF+ N A+IP +L+E+ELFGHEKGAFT A+ R G E A+ Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAE 231 Query: 244 GGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGK 303 GGTLFLDEIG+M + Q +LL++L+ +G + D+R+++ATN +L+Q + QG Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGL 291 Query: 304 FRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYS 363 FR DL++RL ++ L++P L R +DI L RHF+ + + G RF EA L+ + Sbjct: 292 FREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQ-QAEKEGLDVKRFDQEALELMKAHP 350 Query: 364 WPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCM--TLVDEPLAQ---------------- 405 WPGNVREL N++ + L P +V+ + + + D P+ + Sbjct: 351 WPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEE 410 Query: 406 ---QPMAAMFEMPRHEPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRI 462 Q A+ + L +ME L+ L T N K+A +LGL+R+ LR +I Sbjct: 411 NMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470 Query: 463 EKLGLTRPDKR 473 +LG++ Sbjct: 471 RELGVSVYRSS 481
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 190 bits (485), Expect = 3e-65 Identities = 59/141 (41%), Positives = 88/141 (62%), Gaps = 7/141 (4%) Query: 31 RRTNPQRGFTLLELLVVLVVLGLLAGIVAPKYFSQLGRSEAKVARAQIEGLSKALDLYRL 90 R T+ QRGFTLLE++VV+V++G+LA +V P +++ + A + I L ALD+Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 91 EVGHYPNSEQGLQALVVAPS---GEARWTGPYLQKAVPQDPWGRPYIYRQPGENGGEYDL 147 + HYP + QGL++LV AP+ A + K +P DPWG Y+ PGE+G YDL Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGA-YDL 120 Query: 148 LSMGKDGQPGGDGENAEVTSW 168 LS G DG+ G + ++T+W Sbjct: 121 LSAGPDGEMGTED---DITNW 138
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 258 bits (660), Expect = 9e-85 Identities = 124/403 (30%), Positives = 208/403 (51%), Gaps = 10/403 (2%) Query: 10 YSLKALGRQG-VVQLQIDAEDADQARRQAEDQGLRVLSLRSSGGALR-----GMAWRREA 63 Y +AL QG + +A+ A QAR+ ++GL LS+ + G + G++ RR+ Sbjct: 4 YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63 Query: 64 AF---DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQLYEGRSLSQA 120 DL L +++L+TL+ A +PL +AL+++A++S +++A + ++ EG SL+ A Sbjct: 64 RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123 Query: 121 LGQQPRVFPPLYVALVQSSERTGALGDALTRYISYRQRLDLVRQKLVGASVYPLLLLLVG 180 + P F LY A+V + E +G L L R Y ++ +R ++ A +YP +L +V Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183 Query: 181 GGVVLFLLGYVVPRFSQVFEGMGTELPWLSRVLMQVGLFLHAQQAPLALGTVGGVAALWL 240 VV LL VVP+ + F M LP +RVLM + + + L + G A + Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243 Query: 241 LRRHPRVRYWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMGMARGLLGN 300 + R + R +L LP + + AR+ R+L IL +P+L AM ++ ++ N Sbjct: 244 MLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSN 303 Query: 301 AAA-QGLEQASQRVGEGLPLSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLERCADFHDQ 359 A L A+ V EG+ L AL L P+ ++ +GE+SG L MLER AD D+ Sbjct: 304 DYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDR 363 Query: 360 EIGRWVEWFVKLFEPLLMTFIGLLIGLIVILMYMPIFELASSI 402 E + + LFEPLL+ + ++ IV+ + PI +L + + Sbjct: 364 EFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 55.2 bits (133), Expect = 2e-10 Identities = 19/102 (18%), Positives = 43/102 (42%) Query: 65 EVRPRVSGQIDQVAFTEGAQVKKGDLLFQIDPRPFQAEVRRLEAQLQQAKATAIRSANEA 124 E++P + + ++ EG V+KGD+L ++ +A+ + ++ L QA+ R + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 125 RRGERLRDSNAISAELAESRSSAAAEARAGVDAIQAQLDLAR 166 R E + + ++ + E I+ Q + Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 40.6 bits (95), Expect = 9e-06 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 9/115 (7%) Query: 104 RRLEAQLQQAKATAIRSANEARRGERLRDSNAISAELAESR-------SSAAAEARAGVD 156 LE + + +A +++ + + + E + + Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 157 AIQAQLDLARLNLSFTRVTAPISGRVSR-AEFTAGNIVTADVTPLTSVVSTDKVY 210 + +L + + AP+S +V + T G +VT L +V D Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA-ETLMVIVPEDDTL 366
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1101 bits (2849), Expect = 0.0 Identities = 434/1048 (41%), Positives = 647/1048 (61%), Gaps = 25/1048 (2%) Query: 4 SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63 + FFI RPIFA VL+++L++AG++++ QLP+++YP + PP V V AN+PGA+ + + +TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123 +EQ + G++N++YMSS S + G +T+T+TF GTD D AQVQVQN++ P LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183 V + GI+V+K+S MV S + +S+Y N+KD L+RL GVGDVQLFG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243 Y++R+WLD + LT DV+ ++ QN Q+AAGQLG PA SI Q R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303 N EEF + +R +DG + RLKD+ARVELG Y + + +N +PA + I G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363 + + ++AK+AEL+ FP+GM YD T FV+ SI VV TLFEA++LV LV+ LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER-N 422 RA++IP +AVPV L+GTFA++ FG+S+N L++FG+VLAIG++VDDAIVVVENVER Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 IGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482 + L P EAT+K+MS++ G ++ A+VL AVF+P AF G TG Y+QF++TI + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SAFNSLTLSPALAAVLLK----DHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVG 538 S +L L+PAL A LLK +HH K F F FN FD + + Y Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGF------------FGWFNTTFDHSVNHYTN 528 Query: 539 GVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEA 598 V +++ S+G L +YA ++ + F P+ F+P +D+ + QLP A+ +RT+ Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 599 VIKRMSEIALKQPGVADSVAF--PGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAI 656 V+ ++++ LK F G S +G + N+G+ F LKP++ER SA A+ Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 657 AAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAK-S 715 + I+D ++ F P + LGT GF ++ D+ LG++AL + ++ + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 716 HNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGR 775 + L + + + Q +D+EKA+ GV+++DI T+ LG Y NDF GR Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 776 TYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEI 835 ++ VQA+ +FR+ E + +L VR+ GEM+P + F G R+ YNG + EI Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 836 NGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFL 895 G AAPG SSG A A +E L +LP G+ ++WT ++YQ+ LSGN A + + ++ FL Sbjct: 827 QGEAAPGTSSGDAMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFL 885 Query: 896 VLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIV 955 LAA YESWS+P++V+L+VP+ ++ + + N+++ +GL+ +GL+ KNAILIV Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 956 EFAKDEQAK-GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVA 1014 EFAKD K G + A L A R+RLRPILMTS+AFI+GV+PL S+GAGS ++A+G+ Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 1015 VFSGMIGVTVFGLFLTPVFFFLIRRFVE 1042 V GM+ T+ +F PVFF +IRR + Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 84.1 bits (208), Expect = 2e-18 Identities = 65/322 (20%), Positives = 126/322 (39%), Gaps = 20/322 (6%) Query: 739 IDREKAKTHGVAITDIFDTL-----QVYLGSLYTNDFNRFGRTYQVNVQAEQQFRLDAEQ 793 +D + + + D+ + L Q+ G L G+ ++ A+ +F+ + E+ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASIIAQTRFK-NPEE 245 Query: 794 IGQLKVRNNL-GEMIPLATFLKVSDTSGPDRVM-HYNGFITAEINGAAAPGYSSGQ-AEA 850 G++ +R N G ++ L +V V+ NG A + A G ++ A+A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 851 AIEKL--LKEELPNGM----TFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQYESW 904 KL L+ P GM ++ T I L ++L FLV+ ++ Sbjct: 306 IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF---EAIMLVFLVMYLFLQNM 362 Query: 905 SLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDEQAK 964 L + VP+ LL + G N T G+++ +GL +AI++VE + + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 965 -GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMIGVT 1023 L P A ++ ++ ++ +P+ F G+ + + + S M Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 1024 VFGLFLTPVFFFLIRRFVERRQ 1045 + L LTP + + V Sbjct: 483 LVALILTPALCATLLKPVSAEH 504
>adhesinb#Adhesin B signature. Length = 310 Score = 32.5 bits (74), Expect = 0.002 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Query: 318 VELDPDNAD-YRYTLAVTLHELDQLDAAQKQLETVLNRQPANRRARV 363 E DP N + Y L + +L LD K+ + N P ++ V Sbjct: 160 SEKDPANKETYEKNLKAYVEKLSALD---KEAKEKFNNIPGEKKMIV 203
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.0 bits (226), Expect = 1e-21 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 420 HVLVVEDDPHVRQLLCQALGENGFPCQSAADANEGLKVLRSAQPVDLLITDVGLPGMNGR 479 +LV +DD +R +L QAL G+ + ++A + + + DL++TDV +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAF 63 Query: 480 QLAEIARSLRPRLPVLFITGYAETAMAREGFLGADMHLICKPFELQQLQARVTHILGKP 538 L + RP LPVL ++ A + + KPF+L +L + L +P Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 2e-15 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 582 MARGERLLLVDDELDLRAVMREYLTERGFDVTDVGDANSALERFRHGGPFDLVITDIGLP 641 M +L+ DD+ +R V+ + L+ G+DV +A + G DLV+TD+ +P Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMP 58 Query: 642 GGFSGRQVAKAMRMQLAQQKILFITGYAD-----QSIEAQLLDQPGTALLNKPFSLAHLA 696 + + ++ +L ++ ++ E D L KPF L L Sbjct: 59 DE-NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDY-----LPKPFDLTELI 112 Query: 697 DEALRLLD 704 R L Sbjct: 113 GIIGRALA 120
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 26.3 bits (58), Expect = 0.049 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 10/56 (17%) Query: 1 MSKIMHAGRSMVELLLLIA--VALVPVVSGLLVMAFQLEAKLAENASISVQEAVFS 54 M ++ AG + L+L+++ +V + GLLV FQ +QE Sbjct: 1 MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQ--------TVTQLQEQTLP 48
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 31.4 bits (71), Expect = 0.005 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 153 RRDALYSQLQAFNRQLDKPLHISAFSTGKLTPRVNA----VWLDQLAGLGLTVWWQDGA 207 + ++L L F D + +S K++ + +L +A L VW+ DG Sbjct: 41 KGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGN 99
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.026 Identities = 43/305 (14%), Positives = 101/305 (33%), Gaps = 80/305 (26%) Query: 136 NVLSWGVTVLIGAAMLGCLLLWVWPHWRDLERLK-ETARRLGQGQMAE----RTHISPHS 190 LS V++ M L W +++ ++ + + + Q A+ + I+PH Sbjct: 116 LALSIIFNVVVVTFMWSLLYF-GWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHF 174 Query: 191 NIGELAGVFDTMASDLERHVNQQRELLNAVSHELRTPLTRLDFGLVLLFDEVPPASRKRL 250 + + + + + + RE+L ++S +R L + V L DE+ Sbjct: 175 ----MFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADEL-------- 222 Query: 251 LELVGHVRELDELVLELLSYSRLYNADQARERVEVSLLELVDSVLGGFAEELDGRGIQWE 310 + + L+L S + + Q ++ +++++ Sbjct: 223 --------TVVDSYLQLASI-QFEDRLQFENQINPAIMDV-------------------- 253 Query: 311 VRAEGELPRFVLDPRLTARAVQNLVRNAMRYCDESLLLRLRLEADGACL-LTVEDDGIGV 369 ++P ++ V+N +++ + + + L+ D + L VE+ G Sbjct: 254 -----QVPPMLVQT-----LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA 303 Query: 370 PVEERERVFQPFYRLDRSRDRNTGGFGLGLAISRRAIE---GQGGTLTLAQSALGGAQFR 426 +E G GL R ++ G + L+ G Sbjct: 304 LKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLS-EKQGKVNAM 344 Query: 427 IRLPA 431 + +P Sbjct: 345 VLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 2e-20 Identities = 29/136 (21%), Positives = 62/136 (45%) Query: 48 PNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGL 107 I + +DD+A+ ++ L R + V++ + + DLV+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 108 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 167 L +++ LP+L+++A++ + E GA DY+ KP + L+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 168 VNEPRLDNDLILIGGL 183 +L++D L Sbjct: 124 RRPSKLEDDSQDGMPL 139
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 4e-07 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 31/214 (14%) Query: 64 RTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATL--AKAEATRYQ 121 R+ E++ +V + + +EG V++GDVL + +AD +++L A+ E TRYQ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 122 A-------------RLQEQRYRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERAR 168 +L ++ Y + V ++ V R K F + + L++ R Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT-SLIKEQFSTWQNQKYQKELNLDKKR 213 Query: 169 LNLGYATVTAPISGRIGRAQVTEGAL-----------VGQNETTPLATIQQLDPIHADVT 217 TV A I+ ++V + L + ++ L + ++ Sbjct: 214 AER--LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV--LEQENKYVEAVNELR 269 Query: 218 QSTRELNALRRALRAGELQQVGDGQARATLIQDD 251 +L + + + + + Q I D Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Score = 37.9 bits (88), Expect = 6e-05 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 113 AKAEATRYQARLQ--EQRYRELVDDKAVSRQEYDNAKASFL-QADAEVAEARAALERARL 169 A E Y+++L+ E ++ + Q + N L Q + L + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 170 NLGYATVTAPISGRIGRAQV-TEGALVGQNET 200 + + AP+S ++ + +V TEG +V ET Sbjct: 324 RQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1136 bits (2939), Expect = 0.0 Identities = 539/1031 (52%), Positives = 736/1031 (71%), Gaps = 7/1031 (0%) Query: 1 MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDES 60 M FFI RP+FAWV+A+ +++AGALAI QLPVAQYP +APP V + A YPGA A T+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVSLIEQELNGADNLLYFESQS-SLGSATITATFAPGTHPDLAQVDVQNRLKVVESRLPR 119 V +IEQ +NG DNL+Y S S S GS TIT TF GT PD+AQV VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGS 179 V QQG+ VEK S+ +L++A S++ + +SD +A NV D + RL GVG QL+G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQEITANVVVKGQL 239 + AMRIW+D L + LTP DV + QN Q+A G +G P+ Q++ A+++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 SSPDEFAAIVLRANPDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAM 299 +P+EF + LR N DGS V + DVARVE+G + Y R+NGKPA ++L+ GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQ 359 +TA ++AK+ +L +FP+G+K PYDT+PFV++SI +V+ TLFEA++LVF VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERIM 419 N+R TLIPT+ VPV L+GTFA++ A G+S+N LT+FGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 AEEGLPPKQATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILF 479 E+ LPPK+AT K+M QI GA+VGI +VL AVF+PMAF GS G IY+QFS+++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFNRRFESMSNGYQRWVVQALKRSGRY 539 S +AL LTPALCATLLKPV+ H + GFFGWFN F+ N Y V + L +GRY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 LLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIE--AHNA 597 LL+YA+++A + F +LP++FLP EDQG +T IQLP GA++ RT++V Q+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 EEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSER-GADDSAQSIADRATMAFTQLKDA 656 E+ V + + GFSFSG QNA +AF +LK W ER G ++SA+++ RA M +++D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 IAYSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDQLLESASKSKV-LTNVREASL 715 P I LG +TGF+F L D+ G+GH L AR+QLL A++ L +VR L Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 AESPQVQLEIDRRQANALGVSFADIGTVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRS 775 ++ Q +LE+D+ +A ALGVS +DI + A+G +YVNDF ++GR++++ VQA+ R Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 QVEDLLNIHVRNDSGKMVPLGAFVQARWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAM 835 ED+ ++VR+ +G+MVP AF + WV G +L RYNG P++ I GE A G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AEVERLVAQLPAGTGLEWTGLSLQERLSGSQAPLLMALSLLVVFLCLAALYESWSIPTAV 895 A +E L ++LPAG G +WTG+S QERLSG+QAP L+A+S +VVFLCLAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 LLVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVD-QGVDAA 954 +LVVPLG++G +LA TL NDV+F VGL+T IGLSAKNAILI+EFAK L++ +G Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAAVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGMLSAT-LAVVF 1013 +A + A R+RLRPI+MTSLAFILGV+PLAI++GA S +Q A+G GV+GGM+SAT LA+ F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1014 VPVFFVVVMRL 1024 VPVFFVV+ R Sbjct: 1021 VPVFFVVIRRC 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 6e-16 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 430 KVMLVEDEPALRLVMLEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDG 489 +++ +D+ A+R V+ + L G++V+ + ++ + DL++TDV +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE-NA 62 Query: 490 YQLADACRGIAPHAAVLLITGYDLAHSTAKARPHRRTELLAKPFDLQALAQALERLLGST 549 + L + P VL+++ + + KA + L KPFDL L + R L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 550 AQSP 553 + P Sbjct: 123 KRRP 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 2e-17 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 570 RILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQSGERPDLLLSDVGLPGGLNG 629 IL+ +D A+R V+ + L GY V N + + +G+ DL+++DV +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE-NA 62 Query: 630 RQVAERFRERYPDLKVLLITGYDESAAFSDGQPLQGTLVLTKPFELEALAERVRELLEP 688 + R ++ PDL VL+++ + L KPF+L L + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.0 bits (233), Expect = 4e-25 Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 17/254 (6%) Query: 4 VIVITGGSRGIGAATALLAARQGYRICINYHADDQAAEAILSQVRALGAEAIAVRADVSV 63 + ITG ++GIG A A A QG I + + E ++S ++A A A ADV Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 64 EDEIIQLFLRVDDELGPVTALVNNAGTIGQQSRVEDMSEFRLLNVMKTNVVGPMLCAKHA 123 I ++ R++ E+GP+ LVN AG + + + +S+ N G ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 124 LLRMARRHGGQGGAIVNVSSVAARLGSPNEYVD-YAASKGALDTFTIGLAKEVAGEGVRV 182 M R + G+IV V S A G P + YA+SK A FT L E+A +R Sbjct: 128 SKYMMDR---RSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 183 NGVRPGYIHTGFH-----ALSGDPDRV----SKLEPGLPMGRGGRPEEVAEAILWLLSDK 233 N V PG T +G + + G+P+ + +P ++A+A+L+L+S + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 234 ASYATGSLIDLGGG 247 A + T + + GG Sbjct: 243 AGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 120 bits (303), Expect = 1e-31 Identities = 82/403 (20%), Positives = 162/403 (40%), Gaps = 28/403 (6%) Query: 19 IGLSLATFMQVLDTTIANVALPTISGNLGVSYEQGTWVITSFAVSNAIALPLTGWLSRRF 78 I L + +F VL+ + NV+LP I+ + WV T+F ++ +I + G LS + Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 79 GEVKLFIWATLLFVLASFLCGIAQSMPELVGF-RVLQGVVAGPLYPMTQTLLIAVY-PPA 136 G +L ++ ++ S + + S L+ R +QG +P +++A Y P Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKE 135 Query: 137 KRGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFF---INVPIGLFAAAVVRQQMRT 193 RG A L+ + + GP +GG I W ++ I + F ++++++R Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRI 195 Query: 194 RPVVTSRQPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFIIVGSLISVVFLAVFVIW 253 + D G++ + +G+ + F +S+ I ++SV+ +FV Sbjct: 196 ------KGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKH 239 Query: 254 ELTDRHPVVNLRLFVHRNFRIGTIVLVGGYAGFFGINLILPQWLQTQMGYTATWAGLAVA 313 P V+ L + F IG + + G ++P ++ + G + Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 314 PIGLLPVIMS-PFVGKYAHRFDLRVLA--GLAFLAIGTSCYMRAGFTSEVDFQHVALVQL 370 G + VI+ G R + G+ FL++ ++ A F E + ++ + Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS---FLTASFLLETTSWFMTIIIV 356 Query: 371 FMGIGVALFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSF 413 F+ G++ +I+ S L + G L F L Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 88.3 bits (219), Expect = 3e-21 Identities = 54/412 (13%), Positives = 117/412 (28%), Gaps = 90/412 (21%) Query: 15 EPSRKRKAWLLGLLLLLILAGVGTWAWYSIVGRWHESTDDAYVNGNVVEITPLVAGTVTS 74 E R+ L+ ++ L + V + +G EI P+ V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 75 IGADDGDLVHAGQVLLQFDPADSEVALQSAEAKLARSVRQVRGLYSNVDSL--------- 125 I +G+ V G VLL+ +E ++ L ++ + S+ Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 126 ----------------------KAQLETRQAELRKAQQDFNRR----------------- 146 K Q T Q + + + + +++ Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 147 -----------KVLADSGAIAA-------EELSHARDDLSVAQAAVNSARQQLSTS---- 184 L AIA + A ++L V ++ + ++ ++ Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 185 ---SALVDDTVVSSHPDVMAAAADLRQ----AYLDHARTTLVAPVTGYVAKRTVQ-LGQR 236 + L + ++ L + + APV+ V + V G Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 237 LQPGTATMAVIPLDQV-WIDANFKETQLREMRIGQPVEITADVYGSEV--KYSGTVDSLG 293 + M ++P D + A + + + +GQ I + + G V ++ Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Query: 294 AGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEV 345 G ++ + + K+ PL G++ E+ Sbjct: 410 LDA-------IEDQRLGLVFNVIISIEE--NCLSTGNKNIPLSSGMAVTAEI 452
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (253), Expect = 3e-27 Identities = 27/150 (18%), Positives = 56/150 (37%) Query: 1 MLQAKVYVVDDDQGMRDSTVWLLQSVGLQALPFASGQAFLDACVDDGPACVLLDVRMPGL 60 M A + V DDD +R L G ++ V+ DV MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 GGLAVQQAMRERGLMVPVIFVSGHADVPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALE 120 + +++ +PV+ +S ++A + GA D++ KP++ L+ + AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 HAGLARQGDQALALVQARIDGLTPRERDVF 150 + + + G + ++++ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIY 150
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Query: 291 ISEQATHAAEVIRRLRAFLRKGPRRLQALDVAELAGEAMRLCAW---EAAR--DQVQVEL 345 I E T A E++ L +R R A V+ LA E + ++ + + D++Q E Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVS-LADELTVVDSYLQLASIQFEDRLQFEN 244 Query: 346 RMSAQLPLVYADRVLLEQVLLNLLRNAIDANREQQGERPSRILLCAARDGDGVLVEVADQ 405 +++ + V +L++ ++ N +++ I A Q G +ILL +D V +EV + Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGI-AQLPQGG----KILLKGTKDNGTVTLEVENT 299 Query: 406 GPGVAPE 412 G Sbjct: 300 GSLALKN 306
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.6 bits (77), Expect = 0.002 Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 33/214 (15%) Query: 92 RSNQTVAQSEAQYRQA-------QALVRSSRAALFPSLDLSTSKNRSAQGTGSSSSSLSN 144 + ++++ QA Q L RS P L L S Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 145 NSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFA----DLASIR--------- 191 N + +D R T+ A E L Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 192 ----LSQQSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQAR 247 L Q+++ V+ +LRV Q +E+ + + + ++ ++ + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN---------EIL 301 Query: 248 TQLKSTQADLIDLIWQRAQFENAIAVLLGKAPAD 281 +L+ T ++ L + A+ E + +AP Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVS 335
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 803 bits (2076), Expect = 0.0 Identities = 299/1037 (28%), Positives = 523/1037 (50%), Gaps = 30/1037 (2%) Query: 3 LSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMAST 62 ++ FIRRP+ +L++ +M+ G ++ LPVA P + P + VSAN GA + + T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VATPLERKLGSIAGVTTLTSSS-NQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLPS 121 V +E+ + I + ++S+S + GS + + F+ G D D A +VQ + LLP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 GMRSMPTYKKINPSQAPIMVLSLTSD--VLQKGQLYDLADTILSQSLAQVSGVGEVQIGG 179 ++ + S + +MV SD + + D + + +L++++GVG+VQ+ G Sbjct: 121 EVQQQGISVE-KSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SSLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFV------EDAERNWQVRAND 233 + A+RI ++ LLN+Y L+ +V + N + G + + N + A Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QLESAKDYEPVVIR-QQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGAN 292 + ++ +++ V +R +G+++RL DVA V G EN N + A L + TGAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLF 352 ++T IKA+L LQ P +++ D +P ++ ++ E TL A++LV LV+YLF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISR 412 L ++RA+LIP++AVPV L+GTFA++ G+S+N L++ ++LA GL+VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAI 471 + E+ PP +A ++ L+ + + L AVF+ + F GG ++++FSIT+ +A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 IVSLVVSLTLTPMLCARWLKPQQAEQTRLQR----WSDTLHQRMVAAYDHSLGWALRHKR 527 +S++V+L LTP LCA LKP AE + W +T V Y +S+G L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 528 LTLLSLLATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALL 587 LL + + L++ +P + +P++D G + I+ G + Q ++ L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 588 ADP-----AVQSVAGFIGGNSGTNNAFVLVRLKPISERKID---AQKVIERLRKELPKVP 639 + +V +V GF N V LKP ER D A+ VI R + EL K+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 640 GGRLFLMADQDLQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALP-ELTAID 698 G + + G L AL + +++ P L ++ Sbjct: 659 DGFVIPFNMPAIV--ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 699 ARDGAGTQQVTLVVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINP 758 T Q L VD+++A+ LG+ + + ++ A ++ D ++ ++ + Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 759 KYAWDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSP 818 K+ P ++++ V +A+G VP S + R+ S +I + A G S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 819 DQAMAALERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESY 878 AMA +E +K LP + G + + P ++ + ++V+L L LYES+ Sbjct: 837 GDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 879 IHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERH 938 P++++ +P VG LLA + + + ++GL IG+ KNAIL+++ A L Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 939 QGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQ 998 +G E+ A +RLRPILMT+LA ILG LPL +S G+ + +G+ ++GG+V + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 999 ILTLYTTPVVYLYLDRL 1015 +L ++ PV ++ + R Sbjct: 1015 LLAIFFVPVFFVVIRRC 1031 Score = 98.0 bits (244), Expect = 1e-22 Identities = 83/511 (16%), Positives = 177/511 (34%), Gaps = 41/511 (8%) Query: 2 NLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANL-SGASPEVMA 60 N G + +L+ I+ V F LP + LP+ D V + L +GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 STVATPLERKL-------GSIAGVTTLTSSSN-QGSTRVVIGFELGRDIDGAAREVQAAI 112 + + L S+ V + S Q + + + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NATRNLLPSGMRSMPTYKKINPSQAPIMVLSLTS-------DVLQKG--QLYDLADTILS 163 + + L + I + I+ L + D G L + +L Sbjct: 648 HRAKMELG----KIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 164 QSLAQVSGVGEVQIGGSS-LPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVED 222 + + + V+ G ++ V+ + +SL ++ +S A + D Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 223 AERNWQVRA---NDQLESAKDYEPVVIRQQNGTILRLSDVATVTDG----VENRYNSGFF 275 R ++ +D + + +R NG ++ S T RYN Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYN---- 819 Query: 276 NDQAAVLLVVNRQTGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAE 335 L + Q A + A + L S LPA + + S + + +A Sbjct: 820 -----GLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAP 873 Query: 336 HTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILA 395 + I+ V+V L + S + L VP+ +VG + + ++ L+ Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 396 TGLVVDDAIVVLENI-SRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGG 454 GL +AI+++E + G+ ++A + + +L +++ + + + G Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 455 IVRNLFQEFSITLAAAIIVSLVVSLTLTPML 485 I + ++ + ++++ P+ Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 76.4 bits (188), Expect = 4e-16 Identities = 65/411 (15%), Positives = 146/411 (35%), Gaps = 24/411 (5%) Query: 624 AQKVIERLRKELPKVPGGRLFLMADQDLQLGGGGRDQTSSQYL-YTLQSGDLAALREWFP 682 +V +L+ P +P Q++Q G +++SS YL D + Sbjct: 104 QVQVQNKLQLATPLLP---------QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDI 154 Query: 683 KVVAALRALPELTAI----DARDGAGTQQVTLVVDRDQAKRLGIDMDMVTAVLNNAYSQ- 737 A L+ + D + + + +D D + + V L Q Sbjct: 155 SDYVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQI 214 Query: 738 ---RQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQV-ITADGARVPLSTIAHYENSLA 793 + T Q + ++ +P +V + + +DG+ V L +A E Sbjct: 215 AAGQLGGTPALPGQQLNASIIAQTRFK-NPEEFGKVTLRVNSDGSVVRLKDVARVELGGE 273 Query: 794 NDR--VSHEGQFASEDIAFDVAEGYSPDQAMAALER-AVAKLGLPEEV-IAKLGGTADAF 849 N G+ A+ + D A A + A + P+ + + T Sbjct: 274 NYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFV 333 Query: 850 AQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAGVGALLALYVTGGEFSLI 909 + + A++LV+LV+ + ++ L +P +G L G + + Sbjct: 334 QLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTL 393 Query: 910 SLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACLLRLRPILMTTLAAILGA 969 ++ G+ L IG++ +AI++++ ++ P+E+ ++ ++ + Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 970 LPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYLDRLRHRFN 1020 +P+ + + +TI+ + S ++ L TP + L + + Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.7 bits (111), Expect = 1e-07 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 22/132 (16%) Query: 83 ALGTVT-ATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQ 141 A G +T + + ++ + +I KEG+ V+ GD+L ++ AE + Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLK 138 Query: 142 NQAQLKNAQVDLARYKGLYAEDSIAKQTLDT----------AEAQVAQFQGLVK----TN 187 Q+ L A+++ RY+ L + K +E +V + L+K T Sbjct: 139 TQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198 Query: 188 QAQVNDARLNLD 199 Q Q LNLD Sbjct: 199 QNQKYQKELNLD 210 Score = 37.9 bits (88), Expect = 6e-05 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 132 LQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQV 191 L+ + L Q ++++ +A+ + L+ + + K L + ++ Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK--LRQTTDNIGLLT-------LEL 318 Query: 192 NDARLNLDFTQIRAPISGRV-GLRQLDLGNLVAANDTTALVV 232 + IRAP+S +V L+ G +V +T ++V Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV 360
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 53.7 bits (129), Expect = 6e-10 Identities = 80/399 (20%), Positives = 147/399 (36%), Gaps = 55/399 (13%) Query: 16 LLILLCLLGVF-PLDVIL--PSFPALSDEFRVDTKQIAYSVSFFAVGVAMAQIVIGPLSD 72 +LI LC+L F L+ ++ S P ++++F + + F + ++ V G LSD Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 73 GIGRKRLLLAGLSVSIVGAL-GCVFSTHYETFMAFRLVQALGCGSLV-LGQALVQDLYSG 130 +G KRLLL G+ ++ G++ G V + + + R +Q G + L +V Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 131 TQRNAMRILLTSASGLFISLSPLAGAFLQQSFGWEASFTVFVIIAAIVSLLSCVLLHDTP 190 R L+ S + + P G + W S+ + + + I+++ + L Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLLKKE 192 Query: 191 ASHDRA--------PSMSSYRVMLRDTDY----LAHSMLSSLAFACHFS----------- 227 S+ ML T Y L S+LS L F H Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 228 ----------------------FIVIAPLLLMGRLELTAYQFSLVFIGYG-LAYIVGGMA 264 F+ + P ++ +L+ + V I G ++ I+ G Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 265 AAYLNSRVSPQTQIKAGLLLISTAGITLLMWEWVAGLSVLGALLPMIVCTTGTTLVRPAA 324 L R P + G+ +S + +T + ++ ++ + T V Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTI 372 Query: 325 TTQALARYPRQAGAAASLNTTLLFAGAGLTSSVVAGLES 363 + +L ++AGA SL F G ++V GL S Sbjct: 373 VSSSLK--QQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.3 bits (138), Expect = 2e-12 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%) Query: 18 DRAMALFAEKGFGQVSMRELAAHVGLTAGSLYHHFPSKQDLLYDLIEELYEEL-QATLDQ 76 D A+ LF+++G S+ E+A G+T G++Y HF K DL ++ E + + L+ Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77 Query: 77 ARRAMARGASALSCLIAAHWQLHAERPLQFRLAERDL-CCLSEAQQAHLASLRKRYEAGL 135 + S L ++ + + L E C + A + ++ Sbjct: 78 QAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLES 137 Query: 136 LRLIA 140 I Sbjct: 138 YDRIE 142
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 3e-17 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 12/121 (9%) Query: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFAILASKPHLDLMVTDFRLPGGISGV 68 +LV +D+ AIR +L L+ GY V + + + +A+ DL+VTD +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 69 DIAEPAVKLRPDLKVIFISGYP-----AEILESGSPITRKAPILAKPFDLDTLHEQIQSL 123 D+ K RPDL V+ +S + E G+ L KPFDL L I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA-----YDYLPKPFDLTELIGIIGRA 118 Query: 124 L 124 L Sbjct: 119 L 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 1e-15 Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 21/197 (10%) Query: 5 TTAKLLIVDDLPENLLALDALIQGEDREVHQAQSAEAALSLLLEHEFALAILDVQMPGMN 64 T A +L+ DD L+ + +V +A + + L + DV MP N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GFELAELMRGTDKTKHIPIVFVSAAGREMNYAFKGYESGAVDFLHKPLDTLAVKSKVSVF 124 F+L ++ +P++ +SA M A K E GA D+L KP D Sbjct: 62 AFDLLPRIKKAR--PDLPVLVMSAQNTFMT-AIKASEKGAYDYLPKPFD----------- 107 Query: 125 VDLFRQRKVLGRQLEALEQSRQEQELLLSQLQVARCELEHAVRMRDDFMSIVSHEVRTPL 184 +++G AL + ++ L Q + + M++ + + ++T L Sbjct: 108 -----LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR-LMQTDL 161 Query: 185 NGLIL-ETQLRKMHLAR 200 +I E+ K +AR Sbjct: 162 TLMITGESGTGKELVAR 178
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 1e-17 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1032 KVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGF 1091 +L+ DDD L AL G V I N + D DLV+ DV+MP+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAF 63 Query: 1092 EATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLPQ 1151 + I++ LP++ ++A+ + + GA DYL KP DL L +I L + Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1152 LER 1154 +R Sbjct: 122 PKR 124 Score = 71.4 bits (175), Expect = 8e-15 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 824 ILV +D+ +L GY + A + A D ++ D+ +PD + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 825 LQRLKEQASTRHIPVHIISVEDRVE---AAMHMGAVGYAVKPTSREELKEVFARLEAKLT 881 L R+K+ +PV ++S ++ A GA Y KP EL + R A+ Sbjct: 66 LPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 882 QKLKHILLVEDDDLQRESIARLIGD-----DDVEITAVAMAQDALALLR 925 ++ + + L+G + + A M D ++ Sbjct: 124 RRPSKLE------DDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166 Score = 63.7 bits (155), Expect = 2e-12 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 886 HILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGNE 945 IL+ +DD R + + + ++ + A + D ++ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 946 LLKRMTAEDIRAFPPVIVYTG 966 LL R+ PV+V + Sbjct: 65 LLPRIKKARPDL--PVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.7 bits (168), Expect = 6e-17 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 2 HLLVVEDDDIVRMLMVEVLDDLGYKVIEAEDATAALRVLEDPSQALALMMTDVGLPDMRG 61 +LV +DD +R ++ + L GY V +A R + + L++TDV +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA--AGDGDLVVTDVVMPDENA 62 Query: 62 EELAGKARELRPLLPVLFASGYADSFNVPEGMHL-----IGKPFSIDQLRDTVVGILGTP 116 +L + ++ RP LPVL S + + KPF + +L + L P Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 31.7 bits (71), Expect = 0.002 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 67 GQAAGRQQGQQARVQGGLGEGLEDGQVQ-RTDQVEISLGVRQ 107 G A GRQQG + Q GL +GLE G + ++ Q I ++Q Sbjct: 59 GIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQ 100
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 574 bits (1482), Expect = 0.0 Identities = 171/695 (24%), Positives = 299/695 (43%), Gaps = 79/695 (11%) Query: 11 RNIGIVAHVDAGKTTTTERILFYTGVNHKMGEVHDGAATMDWMAQEQERGITITSAATTA 70 NIG++AHVDAGKTT TE +L+ +G ++G V G D E++RGITI + T+ Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 FWQGSTKQFAHKYRFNIIDTPGHVDFTIEVERSLRVLDGAVVVFSGADGVEPQSETVWRQ 130 W+ + + NIIDTPGH+DF EV RSL VLDGA+++ S DGV+ Q+ ++ Sbjct: 64 QWENT--------KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 115 Query: 131 ANKYHVPRLAYINKMDRQGADFLRVVKQIDQRLGHHPVPIQLAIGSEENFMGQIDLVKMK 190 K +P + +INK+D+ G D V + I ++L V Q Sbjct: 116 LRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------- 156 Query: 191 AIYWNDADQGTSYREEEIPAELKALADEWRAHMIEAAAEANDELTMKFLDGEELSIEEIK 250 + T++ E E +W + E ND+L K++ G+ L E++ Sbjct: 157 KVELYPNMCVTNFTESE----------QW-----DTVIEGNDDLLEKYMSGKSLEALELE 201 Query: 251 AGLRQRTIANEIVPTILGSSFKNKGVPLMLDAVIDYLPAPSEIPAIRGTDPDDEEKHLER 310 R + P GS+ N G+ +++ + + + + Sbjct: 202 QEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH------------------ 243 Query: 311 HADDKEPFSALAFKIATDPFVGTLTFARVYSGVLSSGNAVLNSVKGKKERIGRMVQMHAN 370 + FKI L + R+YSGVL ++V S K K +I M Sbjct: 244 --RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSING 300 Query: 371 QRAEIKDVCAGDIAALIG----MKDVTTGDTLCDMDKPIILERMDFPDPVISVAVEPKTK 426 + +I +G+I L + V GDT + ER++ P P++ VEP Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR----ERIENPLPLLQTTVEPSKP 355 Query: 427 ADQEKMGIALGKLAQEDPSFRVRTDEETGQTIISGMGELHLDIIVDRMRREFNVEANIGK 486 +E + AL +++ DP R D T + I+S +G++ +++ ++ +++VE I + Sbjct: 356 QQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKE 415 Query: 487 PQVAYREKIRNTCEIEGRFVRQSGGRGQYGHCWIRFAPGDEGKEGLEFINEIVGGVVPRE 546 P V Y E+ E + + + +P G G+++ + + G + + Sbjct: 416 PTVIYMERPLKK--AEYTIHIEVPPNPFWASIGLSVSPLPLGS-GMQYESSVSLGYLNQS 472 Query: 547 YIPAIQKGIEEQMKNGVLAGYPLINLKAAVFDGSYHDVDSNEMAYKIAASMATKQLSQKG 606 + A+ +GI + G L G+ + + K G Y+ S +++ A + +Q+ +K Sbjct: 473 FQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKA 531 Query: 607 GAVLLEPVMKVEVVTPEEYQGDILGDLSRRRGMIQDGDETPAGKVIRAEVPLGEMFGYAT 666 G LLEP + ++ P+EY D + I D ++ E+P + Y + Sbjct: 532 GTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRS 591 Query: 667 SMRSMTQGRASFSMEFTRYAEAPASIADGIVKKSR 701 + T GR+ E Y + + + R Sbjct: 592 DLTFFTNGRSVCLTELKGYHVT---TGEPVCQPRR 623
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 78.3 bits (193), Expect = 6e-18 Identities = 62/285 (21%), Positives = 101/285 (35%), Gaps = 58/285 (20%) Query: 248 VRVGVIEREVDFDAPGFS-HYRGG----CEQGQTCLYARDGNRPASHGSHVAGILAAQGE 302 V+V V++ D D P GG + +D N HG+HVAG +AA Sbjct: 43 VKVAVLDTGCDADHPDLKARIIGGRNFTDDDEGDPEIFKDYNG---HGTHVAGTIAATEN 99 Query: 303 GF-LPGLGKHSPGFEVMVERNSDAGITANIAASVN-LVEDGVRVLNWSWGIHRVGARDVN 360 + G+ + + V +G I + +E V +++ S G + Sbjct: 100 ENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLG------GPED 153 Query: 361 GDEVDSLVRSGLAMSGYEELLEEFFLWLRKEHPDVVVVNSAGN-GASWSGTDEYRLPSSF 419 E+ V+ +A ++V+ +AGN G TDE P + Sbjct: 154 VPELHEAVKKAVA-------------------SQILVMCAAGNEGDGDDRTDELGYPGCY 194 Query: 420 ITEQLLVVGGHQRSGKATAVEAHDHVRKRHSSNIDMRVDVSAAACI----RPVSAEAAHC 475 +++ VG A+ SN + VD+ A P A Sbjct: 195 --NEVISVGAINFDRHAS-----------EFSNSNNEVDLVAPGEDILSTVPGGKYATFS 241 Query: 476 GTSYATPLVTATVATMLSINPA-----LTPEQVRMLLRRSALTLG 515 GTS ATP V +A + + A LT ++ L + + LG Sbjct: 242 GTSMATPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLG 286
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 43.4 bits (102), Expect = 4e-07 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 58/258 (22%) Query: 44 ATEVVPLQHRSSAELLPALQAFI----GKDGTVSAFE--NKLIVNASPERIDDLRALLQQ 97 T+ + + + +L+ ++ F+ K V + + N L+V+A + +D+L L Sbjct: 131 VTQTFKINNVRAKDLIRVVELFVKSNTSKSSNVLSVDGSNLLVVSAPKDILDNLPQFLST 190 Query: 98 LDTAPKRLLIS--------VDNNDSNFQDNRGNARVIHYGTSNRDGGMQQVQAS------ 143 +D ++LI D D +F V ++R + Sbjct: 191 VDLPTDQILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFN 250 Query: 144 ----------------------------EGQPALIQVGQSIPITSTSTDGYGRIQSN--- 172 GQ I VGQ++P + G +N Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310 Query: 173 -TEYRNVTQGFYVTPSL-SGETVRLQISSNNDRI--SHERADVVKVQ-STDTTVTGKLGE 227 E +NV V P +G + L I+S D + S + +DV+ Q S TTV + G+ Sbjct: 311 TVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVITNQRSIATTVNLRDGQ 370 Query: 228 WITLAGF--NQQSQADRS 243 + L G + + D Sbjct: 371 TLLLGGLTDYKNTSQDSG 388
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 5e-04 Identities = 62/337 (18%), Positives = 111/337 (32%), Gaps = 44/337 (13%) Query: 67 VTGY-LARPLGGILMAHFADHLGRKRVFSLSILMMALPCLLIGVMPTYADIGYAAPLILL 125 T + L +G + +D LG KR+ I++ ++ +G++ +L+ Sbjct: 55 NTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI-------GFVGHSFFSLLI 107 Query: 126 ALRILQGAAVGGEVPSAWTFVAEHAPNGRRGYALGFLQA----GLTFGYLLGALTA---- 177 R +QGA VA + P RG A G + + G G +G + A Sbjct: 108 MARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH 167 Query: 178 --------------TLLAQLFTPQEI-----LDYAWRYPFLLGGVFGVIGVWLRRW--LS 216 +E+ D +G VF ++ L Sbjct: 168 WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLI 227 Query: 217 ETPVFLALRARQEQPVTFPLRQVLGEHRRALIPAALLTCVLTSAVVVLVVITPTVMQQRF 276 + + + + + VT P + L ++ V V + P +M+ Sbjct: 228 VSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVH 287 Query: 277 GMS---AGHTFALSSVGIVFLNIGCVLAGLLVDRVGAWRALMLYSLLLPLG-IGALYASL 332 +S G G + + I + G+LVDR G L + L + + A + Sbjct: 288 QLSTAEIGSVIIF--PGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLE 345 Query: 333 VGQWGMTW-LAYALAGLSCGVVGVVPSVMVGLFPAQI 368 W MT + + L GLS + V L + Sbjct: 346 TTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEA 382
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.002 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 7 RILIADAHPCQRLQLERLLNGLGYYRIAPVASFEELQRLVQCALQPFHLLLGNIELASHC 66 IL+AD R L + L+ G Y + ++ L R + A L++ ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWI--AAGDGDLVVTDVVMPDEN 61 Query: 67 GVDL 70 DL Sbjct: 62 AFDL 65
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 57.1 bits (138), Expect = 4e-11 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 39/183 (21%) Query: 99 QAKLDAGRFSIDNLKAQLAEQRAQLKLAQQQLKRQRDLAAVG--------------ATRE 144 + LD R + A++ ++ + +L L Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 145 EDLQTAEAQLNVTQARIDMYQAQIRQANASLRSD----------------------EAEL 182 +L+ ++QL ++ I + + + +++ E Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 183 GYTRIFAPMDGTVVAVDAR-EGQTLNAQQQTPLILRIAKLSPMTVWAQVSEADIGKIQPG 241 + I AP+ V + EG + + L++ + + + V A V DIG I G Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAE--TLMVIVPEDDTLEVTALVQNKDIGFINVG 383 Query: 242 MTA 244 A Sbjct: 384 QNA 386 Score = 57.1 bits (138), Expect = 5e-11 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 33/198 (16%) Query: 6 HTRRRLLLGGLGLLGLGSLLAWTSLPFGAQPVSTVAVTRADIESSVTALGTLQPR-RYVD 64 +RR L+ + L + L +E TA G L R + Sbjct: 53 VSRRPRLVAYFIMGFLVIAFILSVL--------------GQVEIVATANGKLTHSGRSKE 98 Query: 65 VGAQASGQIRNLHVEVGDQVHKGQLLVEIDPSTQQAKLDAGRFSIDNLKAQLAEQRAQLK 124 + + ++ + V+ G+ V KG +L+++ +A + S L+A+L + R Q+ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSS--LLQARLEQTRYQIL 156 Query: 125 LAQQ----------------QLKRQRDLAAVGATREEDLQTAEAQLNVTQARIDMYQAQI 168 Q + ++ + + +E T + Q + +D +A+ Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216 Query: 169 RQANASLRSDEAELGYTR 186 A + E + Sbjct: 217 LTVLARINRYENLSRVEK 234
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 29.0 bits (65), Expect = 0.050 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 10 AGVALAGVTVPGALYVQRQLTREEFPETPGEAVVELADTATQ-------QLGDTLRGIWR 62 A V L G T+ + R + E + D ++ LG+ L+ IW+ Sbjct: 19 ADVTLYG-TIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQ 77 Query: 63 WSFKGAQAG 71 K + AG Sbjct: 78 VEQKASIAG 86
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.027 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 32 MLQISGPNGSGKTSLLRLLAGLMQPTAGQILLG-GKPLAEQ 71 + + G G GK++L+ L GL + +G GK EQ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQ 638
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 64.4 bits (157), Expect = 1e-15 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 9 AIALNYDG--HQAPTLTAKGDEDLAEAILALAREHEVPIYENAELVR-LLARLELGEQIP 65 AI + Y P +T K + + + +A E VPI + L R L + IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 66 EALYLTIAEIIAF 78 AE++ + Sbjct: 328 AEQIEATAEVLRW 340
>PF06580#Sensor histidine kinase Length = 349 Score = 26.4 bits (58), Expect = 0.034 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%) Query: 5 VAVIFLALAWALSLWFFLNYSKR---------QRELAAQQAEGDALRDQ 44 V+ + W+L L+F ++ K + AQ+A+ AL+ Q Sbjct: 122 FNVVVVTFMWSL-LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQ 169
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.001 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 8/107 (7%) Query: 3 QTRQTSTRPQMALQSYLDGLLQEATEAKDLSEQPAVADEFAEAVREEQARDARQPARPEP 62 +T +T P++ Q QE +E +PA ++ ++E Q++ +P Sbjct: 1115 ETEKTQEVPKVTSQVSPK---QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 63 AEAAAASFAPRPFAEPRLAVLPSVMPVEAPVVTV---VEQEVVAEAS 106 A+ ++ V VE P T + V +E+S Sbjct: 1172 AKETSS--NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 71.9 bits (176), Expect = 2e-16 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 134 LNSSLLFGSGDAMPSDKAFAIIEKVASILK---PFANPVHVEGFTDNLPIRTAQYPTNWE 190 L S +LF A + A ++++ S L P V V G+TD I + Y N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272 Query: 191 LSSARAASIVRLLAMEGVNPARMASVGYGEYQPVASNDTAEGRAR---------NRRVVL 241 LS RA S+V L +G+ ++++ G GE PV N + R +RRV + Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332 Query: 242 VI 243 + Sbjct: 333 EV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 4e-11 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 2 AVKVLVVDDSGFFRRRVSEILSADPTIQVVGTATNGKEAIDQALALKPDVITMDYEMPMM 61 +LV DD R +++ LS V +N A D++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALS-RAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVRHIMQRCP-TPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNPDKVKQ 120 + + I + P PVL+ S+ + A + GA DYLPK F D++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPF-DLTELIGIIGR 117 Query: 121 LL 122 L Sbjct: 118 AL 119
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 2e-06 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 22/122 (18%) Query: 455 ETDLDKNLVEALADPLV--HLVRNAVDHGIEMPDEREASGKARTGRVVLSAEQEGDHILL 512 E ++ +++ P++ LV N + HGI + G+++L ++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 513 SISDDGKGMDPNILRAKAVEKGLMDKDAAERLSESDCYNLIFAPGFSTKTEISDVSGRGV 572 + + G N + GL + ERL +++ G + ++S+ G+ Sbjct: 295 EVENTGSLALKNTKESTGT--GLQNVR--ERL------QMLY--GTEAQIKLSEKQGKVN 342 Query: 573 GM 574 M Sbjct: 343 AM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 2e-24 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 2 KILIVDDFSTMRRIIKNLLRDLGFTNTDEADDGTTALPMLENGHYDFLVTDWNMPGMSGI 61 IL+ DD + +R ++ L G+ + T + G D +VTD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DLLRKVRASDKLKSMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121 DLL +++ + +PVL+++A+ I+A++ G Y+ KPF L I + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 50.2 bits (119), Expect = 6e-09 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 259 TAKTANAVPATANPLHQPLPMNQNAWAEGLVNRVMYLSSQNLKSADIQLEPAELGRLDIR 318 T +P A P+ P+ + W + L + + Q +SA+++L P +LG + I Sbjct: 216 TPHQTQPLPTVAAPVLSA-PLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQIS 274 Query: 319 VNVAADQATQVTFISGHAGVRDALDSQVHRLRELFAQQGLAQPDVNVADQSRGQQQQQGQ 378 + V +QA Q+ +S H VR AL++ + LR A+ G+ N++ +S QQQ Sbjct: 275 LKVDDNQA-QIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAAS 333 Query: 379 AQGSNLSGVAARRAEQGGAEAVDSARPLE-QQVVVGDSAVDYYA 421 Q S A G + P+ Q V G+S VD +A Sbjct: 334 QQQQ--SQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA 375
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.2 bits (190), Expect = 5e-17 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 3/137 (2%) Query: 5 QALTVLVAEDSAVDRLLLAQIVRRQGHQVFTAENGEQAVALYLERRPQLVLLDALMPVMD 64 T+LVA+D A R +L Q + R G+ V N LV+ D +MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GFEAARQIKALAGEALVPIIFLTSLNEEEGLVRCLEAGGDDFMAKPYSA-VILAAKIRAM 123 F+ +IK + +P++ +++ N ++ E G D++ KP+ ++ RA+ Sbjct: 62 AFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 124 DRLRRLQATVLEQRDQI 140 +R + + + Sbjct: 120 AEPKRRPSKLEDDSQDG 136
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 52.9 bits (126), Expect = 1e-11 Identities = 40/140 (28%), Positives = 75/140 (53%) Query: 10 LAPVVDMAEEAERKAAQRLGHFQQQLATAQAKLAELERFREDYQLQWINRGGQGVNGSWL 69 LA + D+AE+ AA+ LG ++ A+ +L L ++ +Y+ + G+ + Sbjct: 7 LATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRW 66 Query: 70 VNYQRFLGQLETAMTQQRQSLVWHQNNLNNARGTWQQAYARVEGLRKLVQRYQDEARRAE 129 +NYQ+F+ LE A+TQ RQ L ++ A +W++ R++ + L +R A AE Sbjct: 67 INYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAE 126 Query: 130 DKREQRLLDELSQRLPRQNP 149 ++ +Q+ +DE +QR + P Sbjct: 127 NRLDQKKMDEFAQRAAMRKP 146
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 59.8 bits (144), Expect = 6e-13 Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 11/209 (5%) Query: 22 VWTLPSFDPEPEP-EPEPEPEPEVIEEVEEVPLEEVQPLTLEELEAIRQEAYNEGFATGE 80 WT P P EPE +IEE E +++ L ++ E Q EG G Sbjct: 9 TWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGH 68 Query: 81 REGFHSTQLKVRQEAEEALKTKLD----SLERLMANLMEPIAEQDTQIEKSLVHLIAHMS 136 ++G+ + ++ K++ +++L++ + D+ I L+ + + Sbjct: 69 KQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAA 128 Query: 137 RQVIGRELRNDSSQITQVLREALKLLPMGADNIRIHLNPQDF----ELAKALRERHEENW 192 RQVIG+ D+S + + +++ L+ P+ + ++ ++P D ++ A H W Sbjct: 129 RQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLH--GW 186 Query: 193 RLLEDSTLLPGGCRIETAHSRIDATMETR 221 RL D TL PGGC++ +DA++ TR Sbjct: 187 RLRGDPTLHPGGCKVSADEGDLDASVATR 215
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 303 bits (777), Expect = e-104 Identities = 104/330 (31%), Positives = 205/330 (62%) Query: 10 KLSRVDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMAQMGNVHRDQVEQVMSEFVDI 69 L+ KAAILL+S+G +++V +++ +E++ + +A++ + + + V+ EF ++ Sbjct: 14 ALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKEL 73 Query: 70 VGDQTSLGVGSDAYIRKMLNQALGEDKANGLVDRILLGGNTSGLDSLKWMEPRAVADVIR 129 + Q + G Y R++L ++LG KA +++ + + + ++ +P + + I+ Sbjct: 74 MMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQ 133 Query: 130 YEHPQIQAIVVAYLDPDQAGEVLSNFDHKVRLDIVLRVSSLNTVQPAALKELNQILEKQF 189 EHPQ A++++YLDP +A +LS+ +V+ ++ R++ ++ P ++E+ ++LEK+ Sbjct: 134 QEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKL 193 Query: 190 SGNSNAARTTLGGIKRAADIMNFLDSSVEGALMDAIREIDSDLSEQIEDLMFVFNNLADV 249 + S+ T+ GG+ +I+N D E +++++ E D +L+E+I+ MFVF ++ + Sbjct: 194 ASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLL 253 Query: 250 DDRGIQALLREVSSDVLVVSLKGADERVKDKIFKNMSKRASELLRDDLEAKGPVRVSDVE 309 DDR IQ +LRE+ L +LK D V++KIFKNMSKRA+ +L++D+E GP R DVE Sbjct: 254 DDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVE 313 Query: 310 TAQKEILTIARRMAEAGEIVLGGKGAEEMI 339 +Q++I+++ R++ E GEIV+ G E+++ Sbjct: 314 ESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 533 bits (1374), Expect = 0.0 Identities = 206/572 (36%), Positives = 307/572 (53%), Gaps = 35/572 (6%) Query: 28 LENISQMPMLRQIGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAA 87 LE ++++ +I L+V +A+VAI A+VLW++ PDYR L+ +LS D ++ L Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 88 DIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATR 147 +IPY SGA+ V AD + RL+LA G+ P G VGFELLD+E+ G SQF E Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGL-PKGGAVGFELLDQEK-FGISQFSEQVN 130 Query: 148 YRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQV 207 Y+R+LEGELART+ +L VK+ARVHLA+PK S+FVR+++ PSASV V L PGRAL+ GQ+ Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 208 MAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVH 267 A+V+LV+++V L VT+VDQ G+LL++ S Q ++ VES + +R+ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQS-NTSGRDLNDAQLKFANDVESRIQRRIE 249 Query: 268 NILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPA----LRSEQSVDEQRASSQGPQ 323 IL P++GN A+V+A LDF+ E T E ++P+ A LRS Q ++ + P Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 GVPGALSNQP AP T P N Q +T + P Sbjct: 310 GVPGALSNQPAPPNEAPIAT-------------PPTNQQNAQNTPQTSTSTNSNSAGPRS 356 Query: 384 KRQQSTKNFELDRSISHTRQQQGRMARLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443 ++ T N+E+DR+I HT+ G + RLSVAVVV+ + D P A+ + + Sbjct: 357 TQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTL-----ADGKPLPLTADQMKQI 411 Query: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQVLGVVFILVL 503 L ++A+GF RGD++ V+N PF+A ++ F+QQ F D + + +LV+ Sbjct: 412 EDLTREAMGFSDKRGDTLNVVNSPFSA-VDNTGGELPFWQQQSFIDQLLAAGRWLLVLVV 470 Query: 504 VF----GVLRPVLNNITGGGKQAAPDSDMELGGMMGLDGELANDRVSLGGPTSILLPSPS 559 + +RP L K A + + ++ L+ D + L Sbjct: 471 AWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRL---- 526 Query: 560 EGYEAQLNAIKGLVAEDPGRVAQVVKDWINAD 591 G E I+ + DP VA V++ W++ D Sbjct: 527 -GAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 78.5 bits (193), Expect = 1e-22 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 17 MQADAMSLPKVTAAPELAPGQSTFADMLGQAIGKVHETQQASTQLANAFEIGKSGVDLTD 76 +QA AMS + P+ +FA L A+ ++ +TQ A+ A F +G+ GV L D Sbjct: 13 LQATAMSARAQESLPQ---PTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALND 69 Query: 77 VMIASQKASVSMQAMTQVRNKLVQAYQDIMQMPV 110 VM QKASVSMQ QVRNKLV AYQ++M M V Sbjct: 70 VMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 478 bits (1231), Expect = e-169 Identities = 174/472 (36%), Positives = 255/472 (54%), Gaps = 36/472 (7%) Query: 2 AIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMDG 61 +L+ +DD +R L L G+ + +A + LVV+DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 HQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEP--------KALLNL 113 LL ++++ +P LPVL+M+A A++A +GA DYL KPF+ +AL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 114 VERHAAGRVTGEEGP--VACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQ 171 R + ++G V A +++ + AR+ ++D T++I+GESGTGKE++AR +H Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD 182 Query: 172 QSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISE 231 R PFVAIN AAIP +++E+ LFGHEKGAFTGA G+FEQAEGGTL LDEI + Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242 Query: 232 MPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSV 291 MPM Q +LLRVLQ+ E VGGR PI D+R++A TN+DL + G FREDLYYRL+V Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 292 FPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRELDNA 351 PL PLR+R DI L + + K R A ++A+ WPGNVREL+N Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 352 LQRALILQQGGVIEAADFCL-----------------AGAIPLSAGTEPSL--------E 386 ++R L VI +G++ +S E ++ + Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 387 VVADAGGLGDDMRRHEYQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQM 438 + +G + EY +I+ L A RG + +AA+ LG++ TLR K+ ++ Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 506 bits (1304), Expect = e-179 Identities = 177/488 (36%), Positives = 255/488 (52%), Gaps = 10/488 (2%) Query: 5 TKILLIDDDSARRRDLAVVLNFLGEENLACASHDWQQAVEPLSSSREVLCVLIGTVNAPG 64 IL+ DDD+A R L L+ G + ++ +++ + V+ V Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNA--ATLWRWIAAG-DGDLVVTDVVMPDE 60 Query: 65 NLLGLLKTVATWDEFLPVLLLGEISSAELP-EDLRRRVLSNLEMPPSYSQLLDSLHRAQV 123 N LL + LPVL++ ++ + + L P ++L+ + RA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 124 YREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVV 183 + R + + LVG S A+Q + +++ ++ TD +++I GESGTGKE+V Sbjct: 121 EP----KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 184 ARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243 AR LH + KRR PFV +N AIP +L+ESELFGHEKGAFTGA T GRFE A GGTLF Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEDGTFREDL 303 LDEIGDMP+ Q +LLRVLQ+ + VG DVRI+AAT+K+L+ I G FREDL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 304 YYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPGNVR 363 YYRLNV P+ + PLR+R EDIP L+ + + E E RF+ ++ + H WPGNVR Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 364 ELANLVERMAIMHPYGVIGVSELPKKFRY-VDDEDEQMVDSLRSDLEERVAINGHTPN-F 421 EL NLV R+ ++P VI + + R + D + + L A+ + F Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYF 416 Query: 422 SNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGMS 481 ++ P L +E LI AL G +AA+ L + R TL +K+R+ G+S Sbjct: 417 ASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476 Query: 482 RQGGEDQA 489 A Sbjct: 477 VYRSSRSA 484
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 27.3 bits (60), Expect = 0.010 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%) Query: 35 VPTKEVQRPELEKAVSDIQEYVKASQRQLDFSVDD----STGTLVVKVIATGSGEVIRQL 90 +P VQ E+ +IQ V++ Q DF+VD S GT+ V + + G Sbjct: 36 IPACTVQNAEVNWGDIEIQNLVQSGGNQKDFTVDMNCPYSLGTMKVTITSNGQ------- 88 Query: 91 PSEAALSLARSLAEGDGFLL 110 + L S A GDG L+ Sbjct: 89 TGNSILVPNTSTASGDGLLI 108
>FLAGELLIN#Flagellin signature. Length = 507 Score = 139 bits (352), Expect = 2e-37 Identities = 110/421 (26%), Positives = 166/421 (39%), Gaps = 11/421 (2%) Query: 2 ALTVNTNITSMSVQKNLNKSSDALGTTMGRLSSGLKINSAKDDAAGLQISNRLTTQIKGL 61 A +NTN S+ Q NLNKS +L + + RLSSGL+INSAKDDAAG I+NR T+ IKGL Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 SVAVKNANDGISIAQTAEGAMATSGNIMQRMRELALQSANGSNSDDDRASMQQEFTALSG 121 + A +NANDGISIAQT EGA+ N +QR+REL++Q+ NG+NSD D S+Q E Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELTRIANTTTFGGRNLLDGTFSGSSFQVGANSNESISFGMKDVSATSMKGNYNEASVAGG 181 E+ R++N T F G +L QVGAN E+I+ ++ + S+ + + G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQM-KIQVGANDGETITIDLQKIDVKSLGLDGFNVN---G 176 Query: 182 VATLQASVTGAAGKFGTNNAGSTSASVVGTAGAGVFDKPTIGAAAGNLVLNVGTTTTTIA 241 ++ K T + + V A Sbjct: 177 PKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVN-----SGAVVTDTTAPTVPDKVYVNA 231 Query: 242 AAAGDTLQDVVDNINLETSNTGVTASIDSATGALKLDGTQAFTIDASTDDVLSTALGLAE 301 A T D +N ++ T + + + A+ D ++ + Sbjct: 232 ANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKT 291 Query: 302 AGGAQLSKTGTANLRDGVLGAGGAGNLTLGSTNIALVATDTLSSVVGKVNAQTGTTGVTA 361 + T N L + A + + VN Q T Sbjct: 292 GNDGNGKVSTTINGEKVTLTVADITAGA--ANVDAATLQSSKNVYTSVVNGQFTFDDKTK 349 Query: 362 SIDSATGQLKLNSAAGFDVGGTAGTLTGLGLTAGSVAIAPQTTGLASAASIDINGTTFNF 421 + + L+ N+A + T AG T + ++ Sbjct: 350 NESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINED 409 Query: 422 A 422 A Sbjct: 410 A 410 Score = 94.7 bits (235), Expect = 2e-22 Identities = 70/334 (20%), Positives = 113/334 (33%), Gaps = 1/334 (0%) Query: 353 QTGTTGVTASIDSATGQLKLNSAAGFDVGGTAGTLTGLGLTAGSVAIAPQTTGLASAASI 412 G T ++ + G + A+ Sbjct: 174 VNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAAN 233 Query: 413 DINGTTFNFAQGDDLDAIVDNINNNGAGAVGSGTALTGVTAKNDNGRLVLTSANGQDIKL 472 T A A A+ G + +T Sbjct: 234 GQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGN 293 Query: 473 DNGSGVTGQGALAAVGLNSGTTKAGLVADTSISLNGVEVKFKKGDDMDSIAASINAASTG 532 D V+ V L AG + +L + + + + Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353 Query: 533 VNASVVVNAGSSTLSLFADQDITVADGSNGTGLAALGLTAVAGKTSAVEMESTVSNLNIT 592 + + N S + G + G T K +A + + ++ Sbjct: 354 KLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDK-TASGVSTLINEDAAA 412 Query: 593 DAQSAQQAIQVLDGAMQSLDSQRSQLGAVQNRFDSTVANLQSISENSTAARSRIQDADFA 652 +S + +D A+ +D+ RS LGA+QNRFDS + NL + N +ARSRI+DAD+A Sbjct: 413 AKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYA 472 Query: 653 AETAELSKQQTLQQASTAILSQANQLPSSVLKLL 686 E + +SK Q LQQA T++L+QANQ+P +VL LL Sbjct: 473 TEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>FLAGELLIN#Flagellin signature. Length = 507 Score = 74.7 bits (183), Expect = 2e-16 Identities = 95/505 (18%), Positives = 162/505 (32%), Gaps = 30/505 (5%) Query: 18 QNYSNLAKITEQVTSKSRIQSAGDDPVGAARLLVLQQQSALLEQYSGNMTTVKNALLQEE 77 ++ S+L+ E+++S RI SA DD G A L Q S N + E Sbjct: 19 KSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTE 78 Query: 78 SVLSTINDALQRASELAIQAGNGGLSDADRTSIASEIKEIEANVFGLLNSRDANGDYMFG 137 L+ IN+ LQR EL++QA NG SD+D SI EI++ + + N NG + Sbjct: 79 GALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLS 138 Query: 138 GSKSSTPPYVRNADGTYSYQGDQTQLSLQVSDTLRLATNDTGYSIFDQATNNSRTQSSLV 197 N T + + +L L + + + ++ Sbjct: 139 QDNQMKIQVGANDGETITIDLQKID-----VKSLGLDGFNVNGPKEATVGDLKSSFKNVT 193 Query: 198 APSPDDGKVLLSGGLLTSATTYGNQFAAGQPYSVTFTSATEYSVRDAAGNDITNETAGKG 257 + S + A P V +A D A N+ + Sbjct: 194 GYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTT 253 Query: 258 KFDVNTEGGKMISLR------GVDFEINLNLAEGDDADAVVAGHVFTLEAKPDTLTATRS 311 K T K I+ G F+ D + + +T T + Sbjct: 254 KSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVA 313 Query: 312 AGNPSTAQVTGTSVTDPEAYRSTFPSNGAVIRFTSDTEYSLYAQPYSADSKPIGSGTVGA 371 A V ++ + ++ NG S A++ G + Sbjct: 314 DITAGAANVDAATLQSSKNVYTSV-VNGQFTFDDKTKNESAKLSDLEANNAVKGESKITV 372 Query: 372 GNAVTVAGVTYQFDSAPKQGDQFSVNANTHRTQNVLDTLGQLRSALEKPLDTPEAQAALK 431 A A + + A+ T D AA K Sbjct: 373 NGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDA------------------AAAK 414 Query: 432 TATDSAISNLASARDRIDITRGSIGARGNSLDIQAQENESLGLANQSTQSAIGDTDMASA 491 +T + ++++ SA ++D R S+GA N D + S +S I D D A+ Sbjct: 415 KSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATE 474 Query: 492 TIQLTLQQAMLEASQLAFARISQLS 516 ++ Q + +A A+ +Q+ Sbjct: 475 VSNMSKAQILQQAGTSVLAQANQVP 499
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 218 bits (557), Expect = 4e-65 Identities = 135/465 (29%), Positives = 237/465 (50%), Gaps = 14/465 (3%) Query: 2 SSLISIGLSGLSASQAALSVTSNNIANAATSGYSRQQTVQAAGPSHNIGAGFLGTGTTLA 61 SSLI+ +SGL+A+QAAL+ SNNI++ +GY+RQ T+ A S G++G G ++ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 62 DVRRIYSSYLDNQLQTATSLQADSVTFQDQITSVDKLLADRDTGISSVLTAFFSALQTAA 121 V+R Y +++ NQL+ A + + +Q++ +D +L+ + +++ + FF++LQT Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 122 AKPGDVASRQLLLTQAQTLSNRFNAVSTQLTQQNATINSQLDTMAGQVNKLTANIAEYNK 181 + D A+RQ L+ +++ L N+F L Q+ +N + Q+N IA N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 182 QI--TAASASGNTPNSLLDARSEAVRQLNELVGVTVQER-DGNYDVYLGSGQSLVTGTKA 238 QI +G +PN+LLD R + V +LN++VGV V + G Y++ + +G SLV G+ A Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 239 NTLSVEPGVADKSQVALRINYDSFSSDVT--SVVSGGAIGGLLRYRQDVLTPSMNELGRV 296 L+ P AD S+ + + + +++ G++GG+L +R L + N LG++ Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300 Query: 297 ALVVADSINSQLGQGLDANGQFGSSLFSSINSATAIAQRSLASSNNSAGSGNLDVTIANS 356 AL A++ N+Q G DANG G F+ I + ++ + + G + T+ ++ Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFFA-------IGKPAVLQNTKNKGDVAIGATVTDA 353 Query: 357 GALTTYDYEVKFTSASQYSVRRSDGTDMGSFDLNADPAPVIDGFSLALKGGGLAAGDSFK 416 A+ DY++ F +Q+ V R + +A+ DG L G A DSF Sbjct: 354 SAVLATDYKISF-DNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTF-TGTPAVNDSFT 411 Query: 417 VIPTRAAAGSITTTLTDANKLAFAGPISAAAGSGNSGTGTITQPT 461 + P A ++ +TD K+A A A +G + + Sbjct: 412 LKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQS 456 Score = 78.1 bits (192), Expect = 4e-17 Identities = 55/151 (36%), Positives = 74/151 (49%), Gaps = 26/151 (17%) Query: 551 ETTIGGSPAANDSFTL-----------------------SFNADGKADNRNANALLDLQT 587 E T G+PA NDSFTL S G +DNRN ALLDLQ+ Sbjct: 397 ELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQS 456 Query: 588 KSTVGTNSGTGTSFTSAYASLVERVGAKASQATIDTTATQAVLKSATESRSAVSGVNLDD 647 S G SF AYASLV +G K + + V+ + + ++SGVNLD+ Sbjct: 457 NSKT---VGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDE 513 Query: 648 EAASLVKFQHYYTASSQIIKAAQETFSTLIN 678 E +L +FQ YY A++Q+++ A F LIN Sbjct: 514 EYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 146 bits (369), Expect = 4e-43 Identities = 70/163 (42%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 222 DSDAFVATMLPMAEQAARRIGVDPRYLVAQAALETGWGKSVMRNSDGSSSHNLFGIKATG 281 DS AF+A + A+ A+++ GV ++AQAALE+GWG+ +R +G S+NLFG+KA+G Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASG 207 Query: 282 NWQGEQARAITSEFRDGQFVKETAAFRSYDSYQDSFHDLVTLLQSNARYQGALDAADNPE 341 NW+G T+E+ +G+ K A FR Y SY ++ D V LL N RY A+ A + E Sbjct: 208 NWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRY-AAVTTAASAE 266 Query: 342 QFARELQKAGYATDPGYAKKIISIAQQMQSTPQYAMAGRTTNL 384 Q A+ LQ AGYATDP YA+K+ ++ QQM+S + N+ Sbjct: 267 QGAQALQDAGYATDPHYARKLTNMIQQMKSISDKVSKTYSMNI 309 Score = 68.2 bits (166), Expect = 7e-15 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 19 LNRLSALKHGDRDSEANVRKVAQEFESLFISEMLKASRKASDVLADDNPMNTETVKQYRD 78 LN L A K G+ D AN+R VA++ E +F+ MLK+ R D L D ++E + Y Sbjct: 18 LNELKA-KAGE-DPAANIRPVARQVEGMFVQMMLKSMR---DALPKDGLFSSEHTRLYTS 72 Query: 79 MYDQQLAVSMSREGGGIGLQDVLVRQLTKGRSASINTSPFPRVD 122 MYDQQ+A M+ G G+GL +++V+Q+T + ++P + Sbjct: 73 MYDQQIAQQMT-AGKGLGLAEMMVKQMTPEQPLPEESTPAAPMK 115
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 449 bits (1156), Expect = e-160 Identities = 166/366 (45%), Positives = 223/366 (60%), Gaps = 10/366 (2%) Query: 7 LIATTLLLSCAFAAQAERLKDIASISGVRSNQLIGYGLVVGLNGTGDQTTQTPFTLQTFN 66 A L + A R+KDIAS+ R NQLIGYGLVVGL GTGD +PFT Q+ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 67 NMLSQFGIKVPAGSGNVQLKNVAAVSVHADLPPFAKPGQVVDITVSSIGNSKSLRGGSLL 126 ML GI G N KN+AAV V A+LPPFA PG VD+TVSS+G++ SLRGG+L+ Sbjct: 73 AMLQNLGITTQGGQSNA--KNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 127 MTPLKGIDGNVYAIAQGNLVVGGFDAEGRDGSKITVNVPSAGRIPGGASVERAVPSGFNQ 186 MT L G DG +YA+AQG L+V GF A+G D + +T V ++ R+P GA +ER +PS F Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKD 189 Query: 187 GNTLTLNLNRPDFTTAKRIVDKVNDL----LGPGVAQAVDGGSVRVSAPMDPSQRVDYLS 242 L L L PDF+TA R+ D VN G +A+ D + V P + ++ Sbjct: 190 SVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLMA 248 Query: 243 ILENLEIDPGQAVAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVTITEDPIVSQPGAFS 302 +ENL ++ AKV+IN RTGTIVIG +V++S AV++G+LTV +TE P V QP FS Sbjct: 249 EIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFS 307 Query: 303 NGQTAVVPRSRVNAEQEAKPMFKFGPGTTLDEIVRAVNQVGAAPGDLMAILEALKQAGAL 362 GQTAV P++ + A QE + G L +V +N +G ++AIL+ +K AGAL Sbjct: 308 RGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGAL 366 Query: 363 QADLIV 368 QA+L++ Sbjct: 367 QAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 199 bits (506), Expect = 3e-66 Identities = 84/221 (38%), Positives = 113/221 (51%), Gaps = 15/221 (6%) Query: 16 LAGCVAPTPKPNDPYYAPVLPRTPLPAAANNGSIYQAGF-----EQNLYSDRKAFRVGDI 70 L GC P P P P NGSI+Q+ Q L+ DR+ +GD Sbjct: 19 LTGCAWIPSTPLVQGATSAQP-VPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDT 77 Query: 71 ITITLNERTSASKNAGSQIAKTSKTDIGLTSLFGSTPN-TNNPFGGGDLSLEAGYSGDRA 129 +TI L E SASK++ + ++ KT+ G F + P FG +E SG Sbjct: 78 LTIVLQENVSASKSSSANASRDGKTNFG----FDTVPRYLQGLFGNARADVE--ASGGNT 131 Query: 130 TKGDSKATQGNTLTGSITVTVAEVLPNGIIAVRGEKWLTLNTGEELVRIAGMVRADDIAT 189 G A NT +G++TVTV +VL NG + V GEK + +N G E +R +G+V I+ Sbjct: 132 FNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 191 Query: 190 DNTVPSTRVADARITYSGTGSFADASQPGWLDRFFI--SPL 228 NTVPST+VADARI Y G G +A GWL RFF+ SP+ Sbjct: 192 SNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.6 bits (100), Expect = 8e-07 Identities = 12/44 (27%), Positives = 21/44 (47%) Query: 216 QQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLSFVTQ 259 Q S V+ EE N+ Q+ Y N++V+ TA+ + + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 39.6 bits (92), Expect = 9e-06 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 14/77 (18%) Query: 5 LWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFADLLYQIKRQPGAQSTQDSELPS 64 + A +GL+A L SNN+++ + G+ R + +S L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT--------------IMAQANSTLGA 49 Query: 65 GLQVGTGVRIVGTQKSF 81 G VG GV + G Q+ + Sbjct: 50 GGWVGNGVYVSGVQREY 66
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.5 bits (97), Expect = 6e-06 Identities = 20/61 (32%), Positives = 26/61 (42%) Query: 2 SFNIGLSGLYAANKALNVTGNNIANVATTGFKSSRAEFADQYSNSIRGTSAGKTVIGTGV 61 N +SGL AA ALN NNI++ G+ A S G G V +GV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62 Query: 62 K 62 + Sbjct: 63 Q 63 Score = 37.6 bits (87), Expect = 8e-05 Identities = 16/48 (33%), Positives = 24/48 (50%) Query: 392 QISGGALEDSNVDLTGELVNLIKAQSNYQANAKTISTESTIMQTIIQM 439 Q+S S V+L E NL + Q Y ANA+ + T + I +I + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.9 bits (80), Expect = 7e-05 Identities = 8/38 (21%), Positives = 20/38 (52%) Query: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVLTL 145 VN+ EE ++ + + NA+++ TA + ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 31.9 bits (72), Expect = 8e-04 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 25/152 (16%) Query: 4 SSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGSSQS 63 SS+ N A SG++A LNT ++NI++ + R + Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYT-------RQTTIMAQANSTLGA---- 49 Query: 64 LFEDQGEAGQGVQVKGI--VEDQSTLEARYEPNHPAANKDGYVYYPNVNVVEEMADMISA 121 G G GV V G+ D ++ Y ++ ++ M ++ Sbjct: 50 ----GGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTA--RYEQMSKIDNMLSTSTS 103 Query: 122 SRA------FQTNAELMNTAKNMMQKVLTLGQ 147 S A F + L++ A++ + +G+ Sbjct: 104 SLATQMQDFFTSLQTLVSNAEDPAARQALIGK 135
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 27.3 bits (60), Expect = 0.011 Identities = 11/44 (25%), Positives = 15/44 (34%) Query: 54 AGFSGSLIVAEFESLAAAQTWADADPYIAAGVYDKVVVKPFKQV 97 G GS+ E + A W +P A V V +V Sbjct: 279 IGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.1 bits (247), Expect = 3e-26 Identities = 37/116 (31%), Positives = 60/116 (51%) Query: 4 LLLIDDDQELCELLGSWLTQEGFSVRACHDGQSARLALAEHAPAAVVLDVMLPDGSGLEL 63 +L+ DDD + +L L++ G+ VR + + +A VV DV++PD + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LKQLRSEHAELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119 L +++ +LPVL++SA+ + I E GA DYL KP D EL + L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.0 bits (62), Expect = 0.012 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 1 MRKTLIALMFAAALPTVAMA 20 M+K+LIAL AALP AMA Sbjct: 1 MKKSLIALTL-AALPVAAMA 19
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 4e-05 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 24/115 (20%) Query: 327 PGLSLQGWPTLIERAVDNLLRNALRFNPAGQPVEVSAAREQDRIVISVRDHGPGAAEEHL 386 P + +Q TL+E + ++ + P G + + ++ + + V + G A + Sbjct: 256 PPMLVQ---TLVENGI----KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN-- 306 Query: 387 AQLGEPFFRAPGQEAPGHGLGLA-IARKAAERHGGSLMLE-NHPQGGFVARLELP 439 G GL + + +G ++ + QG A + +P Sbjct: 307 -------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.6 bits (69), Expect = 0.029 Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 168 FGCFLIMIIILAVLALIVVKALAESPWGMFTVMATIPIAMFMGIYMRYIRPGRIGEISVV 227 ++ I V+ + + AL ES +VM +P+ + + + + +V Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMV 928 Query: 228 GVVLLL 233 G++ + Sbjct: 929 GLLTTI 934
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.014 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 21/142 (14%) Query: 114 VLGAVMAASLIGFLITPVFSRIT-------KFFPPLVTGIVI-----TTIGLTLMPVAAR 161 + GA++ +++ ++ VF + + IV + L L P Sbjct: 438 IQGALVGIAMV---LSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA 494 Query: 162 WVMGGNSASPE-----FGSMANIGLAALTFAIVLLLSKLGSATISRLSILLAMVVGTLIA 216 ++ SA F N + K+ +T L I +V G ++ Sbjct: 495 TLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVL 554 Query: 217 WA-LGMTDFSKVGEGPMFAFPT 237 + L + + +G Sbjct: 555 FLRLPSSFLPEEDQGVFLTMIQ 576
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 178 bits (454), Expect = 3e-61 Identities = 89/134 (66%), Positives = 108/134 (80%), Gaps = 1/134 (0%) Query: 1 MGMLNEFKAFAVKGNVVDMAVGIIIGAAFGKIVSSFVGDVIMPPLGLLIGGVDFSDLAIT 60 M ++ EF+ FA++GNVVD+AVG+IIGAAFGKIVSS V D+IMPPLGLLIGG+DF A+T Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT 60 Query: 61 LKAAEGDVPAVVLAYGKFIQTVIDFVIVAFAIFMGVKAINKLKREEAVAPTTPPVPSAEE 120 L+ A+GD+PAVV+ YG FIQ V DF+IVAFAIFM +K INKL R++ P P P+ EE Sbjct: 61 LRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKE-EPAAAPAPTKEE 119 Query: 121 TLLTEIRDLLKTQN 134 LLTEIRDLLK QN Sbjct: 120 VLLTEIRDLLKEQN 133
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.025 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 12/127 (9%) Query: 49 VLVLNDSFGALAASLAGQLQVVSSGDSHLGHLALEKNLARNGLPFDSVPFVPASEHWQGP 108 VL+ + GA A +L Q ++ + + L +++ N LP +P P ++ Sbjct: 123 VLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEE 182 Query: 109 FDRVLVRVPKTLALLEEQLIRLQGQLAPGAQVIAGAMIKHLPRAAGDLMEKYIGPVQASL 168 V + +L++EQ Q Q + RA + I + Sbjct: 183 E------VLRLTSLIKEQFSTWQNQKYQKELNLDKK------RAERLTVLARINRYENLS 230 Query: 169 ALKKARL 175 ++K+RL Sbjct: 231 RVEKSRL 237
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 4e-15 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 1527 VMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDGFEV 1586 ++V DD +R V ++ L R G V + + D+++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1587 ATRIRRDARLKDLPIIMITSRTGQKHRDRAMAIGVNEYLGKP 1628 RI+ DLP+++++++ +A G +YL KP Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 4e-21 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 2 ARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNGF 61 A +L+ DD L + L + GY V SN A D V+ D+VMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQLSK-DPDTSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEEALIAKLKEVLG 120 ++ K PD +PV+V++ ++ I A+ +GA D+L KP + LI + L Sbjct: 64 DLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 A 121 Sbjct: 121 E 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.0 bits (174), Expect = 1e-17 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 6 KVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQ 65 ++V DD IR L AG +V S+ I ++ DV+MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 TCAVIKH-NSAFKDTPVILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIR 119 ++ A D PV+++S+++ + G+ +L KPF EL+ I Sbjct: 65 ---LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 61.9 bits (150), Expect = 2e-13 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 12/171 (7%) Query: 106 ITPPPAARP---EVVPPPPPKKSAVVTTAPKPHKVEPKPKESKAQPKPAAPTPDFDSSQL 162 + PP A +P VV P P + P +E + K +PKP Sbjct: 60 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVE------- 112 Query: 163 SSQIASLEAELSNEQQMYAKRPRIHRLNAASTMRDKGAWYKEEWRKKVERVGNLNYPDEA 222 + E P + A+ K + + R YP A Sbjct: 113 QPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN-QPQYPARA 171 Query: 223 RRQQIYGNLRMMVSINRDGSLYEVLVLESSGQPVLDQAAQRIVRLAAPFAP 273 + +I G +++ + DG + V +L + + ++ + +R + P Sbjct: 172 QALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR-RWRYEP 221
>PERTACTIN#Pertactin signature. Length = 922 Score = 36.6 bits (84), Expect = 3e-04 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 3/79 (3%) Query: 364 VTTIAPPQGVPAGPAPAPAQPVQSVAPAPKPVATQPAKPVAPAKPAPAPTQVAVAK--PA 421 V APP PA P P P Q P P QP +P APAP A + A Sbjct: 563 VGAKAPPAPKPA-PQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAA 621 Query: 422 AKAAEKPAAAGAGNSGWYA 440 A AA G ++ WYA Sbjct: 622 ANAAVNTGGVGLASTLWYA 640
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.017 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 4 LILVGPMGAGKSTIGRLLAKELRLLFKDSDKEI 36 ++L G G GKST+ L F D+ +I Sbjct: 599 VVLEGTGGIGKSTLINTLVGL--DFFSDTHFDI 629
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 240 bits (613), Expect = 7e-75 Identities = 91/403 (22%), Positives = 162/403 (40%), Gaps = 57/403 (14%) Query: 68 DVPWDQALDLVLRSKGLSRRQEGNVLLVAPAAEFAAQ--------SADARVSQALDAHLQ 119 + W A D+V L++ + L + A A S + Q + A ++ Sbjct: 198 PLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIK 257 Query: 120 PLRRE--------LLPIHHAKAADLAQLLLAGLE--------GDGIP----PASLSVDER 159 L R+ ++ + +AKA+DL ++L + + + Sbjct: 258 QLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQ 317 Query: 160 TNTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEK- 218 TN L+V D + ++ +++AQLD+ QV +EA I E +LG++W G Sbjct: 318 TNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQ 377 Query: 219 ------------------LRPGKELFVDLGLERAGSSIGLGLLRGDVLLDLELSAMEKSG 260 + G + + I G +G+ + L+A+ S Sbjct: 378 FTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGN--WAMLLTALSSST 435 Query: 261 NGEIISQPKVVTADKETARILKGTEVPYQETSQSG-----ATSVSFREASLSLEVTPQIT 315 +I++ P +VT D A G EVP SQ+ +V + + L+V PQI Sbjct: 436 KNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQIN 495 Query: 316 PDNKVIMTVRVTKDEPDYVNALNN---VPPIRKNEVNAKVRVADGETIVIGGVYSTSQNN 372 + V++ + + + VN V V GET+V+GG+ S ++ Sbjct: 496 EGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSD 555 Query: 373 VVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSDQA 415 DKVP GD+P +G LFR + + K L++F+ P ++ D+ Sbjct: 556 TADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRD 598 Score = 53.0 bits (127), Expect = 1e-09 Identities = 46/245 (18%), Positives = 96/245 (39%), Gaps = 15/245 (6%) Query: 5 MKYLLATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTL 64 ++ TLL P E S +F+ +++ + ++ ++ +V+G++T+ Sbjct: 7 IRSFSLTLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITV 66 Query: 65 RLQD-VPWDQALDL---VLRSKGLSR-RQEGNVLLVAPAAEFAAQSADARVSQALDAHLQ 119 R D + +Q VL G + VL V + + A +A S A Sbjct: 67 RSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKD-AKTAAVPVASDAAPGIGD 125 Query: 120 PLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQLV 179 + ++P+ + A DLA LL + G+ S+ E +N L++ A + + +V Sbjct: 126 EVVTRVVPLTNVAARDLAPLLRQLNDNAGV--GSVVHYEPSNVLLMTGRAAVIKRLLTIV 183 Query: 180 AQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLR---PGKELFVDLGLERAGS 236 ++D + + + A+ V+ L + + PG + + ER + Sbjct: 184 ERVDNAGDRSVVTVPLSWASAAD----VVKLVTELNKDTSKSALPGSMVANVVADERTNA 239 Query: 237 SIGLG 241 + G Sbjct: 240 VLVSG 244
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 28.7 bits (64), Expect = 0.021 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 11/88 (12%) Query: 40 AQELFQAPLADDWAQAPG------VVVAALQRAYRRSGLRQRRVALALPASQVICKLCHL 93 + LF + + ++++ G +V + +RSG R V L + L L Sbjct: 120 SSMLFLSMI--NYSKDKGYDGIYTIVSHPMLTILKRSGWGIRVVEQGLSEKEERVYLVFL 177 Query: 94 PVEQSGAQLEAQLLADAERLFPFPLEDL 121 PV+ + + L R F +L Sbjct: 178 PVD---DENQEALARRINRSGTFMSNEL 202
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 37/165 (22%), Positives = 54/165 (32%), Gaps = 48/165 (29%) Query: 198 LAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDEHEALEVAAIQSVSGKAP 257 R L L+ TG GTGK L+A A+ + Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVAR------------------ALHDYGKRR- 187 Query: 258 LNSWPQRPFRHPHHSASGP------ALVG-------GSSRPQPGEITLAHHGVLFLDEL- 303 PF + A+ P L G G+ G A G LFLDE+ Sbjct: 188 -----NGPF-VAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 304 ---PEFERRVLEVLREPLESGEIVIARARDKVRFPARFQLVAAMN 345 + + R+L VL++ GE + + ++VAA N Sbjct: 242 DMPMDAQTRLLRVLQQ----GE--YTTVGGRTPIRSDVRIVAATN 280
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 4e-25 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 1 MSRG-VCIVDDDASVRKSLANLLRSAGFETLSFSAGHAFLASPLAGEAGCVLLDLKMPGM 59 M+ + + DDDA++R L L AG++ S AG+ V+ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 SGLEVQRELAQRGWRLPVICMSAHWDDGSVRAAMGLGALACLGKPFSEEVLLKVVEEALA 119 + ++ + + LPV+ MSA + A GA L KPF L+ ++ ALA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 5e-22 Identities = 25/112 (22%), Positives = 53/112 (47%) Query: 127 VLVVDDDSSVRTALGRLLRSQDIPHHLFASAEALSEARLETPCACLLLDMHLPGTSGLEV 186 +LV DDD+++RT L + L + ++A L ++ D+ +P + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 187 QDALCRLALPWPIVFMTGFGTIPMTVQAMRAGAVEFLTKPFDEDQLLTLLQT 238 + + P++ M+ T ++A GA ++L KPFD +L+ ++ Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 2e-04 Identities = 52/281 (18%), Positives = 98/281 (34%), Gaps = 64/281 (22%) Query: 1412 LEILASQAAVSLQTAKFYTRLAEENQIRTQMEAELRRSRAE-LARSAHLQAMNELSASIA 1470 L I+ + V+ + Y + +AE+ + + +A+ A L A L A I Sbjct: 118 LSIIFNVVVVTFMWSLLYFGWHFFKNYK---QAEIDQWKMASMAQEAQLMA---LKAQI- 170 Query: 1471 HEISQP--LLGIASNAAASLRWLKRAKPDLEEAIAGLEDIRNDSERAGNIVRAL----RS 1524 P + NA ++R L I D +A ++ +L R Sbjct: 171 ----NPHFMF----NALNNIRAL----------------ILEDPTKAREMLTSLSELMRY 206 Query: 1525 LAKQSPMQLKAVKLDEL--IREVVRLTSA---DAAKGKVDVQTRLKAGVCVTADPVQLQQ 1579 + S + ++ DEL + ++L S D + + + + V P+ +Q Sbjct: 207 SLRYSNARQVSLA-DELTVVDSYLQLASIQFEDRLQFENQINPAIMD---VQVPPMLVQT 262 Query: 1580 LVFNLITNALEALAGYRCDGVLKITSAVVEDEVEICVDDNGPGIAADERERVFDAFHTTK 1639 LV N I + + L G + + V + V++ G + +E Sbjct: 263 LVENGIKHGIAQLPQ---GGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309 Query: 1640 TGGMGMGLA-ICSSVAQAHGGQLQ-ALVSQLGGCRIRVSLP 1678 G GL + + +G + Q L + G V +P Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 41.2 bits (96), Expect = 1e-06 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 8 RLNKDDAVVLLVDHQTGLISLVQDFSP--NEFKNNVLALGDLAKFFGLPTILTTS-FEQG 64 + + AV+L+ D Q + + E N+ L + G+P + T Q Sbjct: 25 VPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQN 84 Query: 65 PNGPLV------PELKEMFPDAPYIAR----PGQI-------NAWDNEDFVKAIKATGRK 107 P+ + P L + I + +A+ + ++ ++ GR Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRD 144 Query: 108 QLIIAGVVTDVCVAFPTLSALAEGFEVFVVTDASGTFNE 146 QLII G+ + A E + F V DA F+ Sbjct: 145 QLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL 183
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 38.1 bits (88), Expect = 1e-05 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 26/166 (15%) Query: 13 DAAVLLV-DHQAGLLSLVRDIEP--DKFKNNVLALADLAKFFNLPTILTTS-FEQGPNGP 68 + AVLL+ D Q + + N+ L + +P + T Q P+ Sbjct: 29 NRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDR 88 Query: 69 LV------PELKALFPDAPYIAR----PGQI-------NAWDNEDFVKAVKATGKKQLII 111 + P L + + I + +A+ + ++ ++ G+ QLII Sbjct: 89 ALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLII 148 Query: 112 AGVVTEVCVAFPALSALEEEFEVFVVTDASGTFNEMTRDAAHDRMS 157 G+ + A A E+ + F V DA F+ +M+ Sbjct: 149 TGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL-----EKHQMA 189
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.0 bits (244), Expect = 1e-25 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 14 MVGRNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGT 73 M G IL+ DD+A IR ++ AL AGYD N+ I DL++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 74 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 133 + +L R+K + D+P+++++A+ I+ E GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 134 LRRT 137 L Sbjct: 119 LAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.026 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 25/99 (25%) Query: 329 LVFNAVKY----TQDEGSIRIRWWADAQGAHLSVQDSGVGIDAKHLPRLTERFYRVDSSR 384 LV N +K+ G I ++ D L V+++G + K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKE------------ 309 Query: 385 ASNTGGTGLGLAIVKHVLMRHRGK---LEISSVPGHGST 420 TG GL V+ L G +++S G + Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.020 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 7/42 (16%) Query: 211 PSGNFVRILHPDGTMGVYLHLMRGSVVVAEGQRVRQGQMLAK 252 SG I + + ++ V EG+ VR+G +L K Sbjct: 92 HSGRSKEIKPIEN--SIVKEII-----VKEGESVRKGDVLLK 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 3e-20 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 1 MSKVNVLVVDDAPFIRDLVRKCLRNAFPGMAIDDAINGRKAMAMLGKEAFDLVLCDWEMP 60 M+ +LV DD IR ++ + L A G + N + DLV+ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMSGLELLTWCRQQPALKNLQFIMVTSRGDKENVIQAIQAGVSDFVGKPFTNEQLLTKVK 120 + + +LL ++ A +L ++++++ I+A + G D++ KPF +L+ + Sbjct: 59 DENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 121 KALT 124 +AL Sbjct: 117 RALA 120
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 30.0 bits (67), Expect = 0.018 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 317 EVGLRLRYEIVRQFAPYIGVTWNRSYGKTADLIR 350 + L L Y + F PYIGV W+R+ AD IR Sbjct: 272 QASLALSYRL-NMFTPYIGVKWSRA-SFDADTIR 303
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 42.8 bits (100), Expect = 5e-06 Identities = 33/122 (27%), Positives = 44/122 (36%) Query: 377 MAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGM 436 G + AG + S +AG A + MAG S AG SMAG Sbjct: 913 TTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGY 972 Query: 437 DHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMGGAM 496 D S +A AG + AG A+ + AG A D S + G G ++ Sbjct: 973 DSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSL 1032 Query: 497 QS 498 S Sbjct: 1033 TS 1034 Score = 41.3 bits (96), Expect = 1e-05 Identities = 36/138 (26%), Positives = 45/138 (32%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S G D +AG AG + S+MAG AG G D S + Sbjct: 198 STGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLI 257 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG AG D S A A AG G A D S +AG A + Sbjct: 258 AGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEE 317 Query: 486 HSSMEGMGGAMQSHPASE 503 + G G + S+ Sbjct: 318 STQTAGYGSTQTAQKGSD 335 Score = 40.9 bits (95), Expect = 2e-05 Identities = 39/118 (33%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 377 MAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM-AGMDHGSMAG 435 +AG AG D + +AG AG + S+MAG TGM S + AG AG Sbjct: 193 IAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYG-STQTGMKGSDLTAGYGSTGTAG 251 Query: 436 MDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMG 493 D S +A AG D S AG A AG G A D S + G G Sbjct: 252 DDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYG 309 Score = 39.4 bits (91), Expect = 5e-05 Identities = 31/133 (23%), Positives = 43/133 (32%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S MAG A S AG +MAG D S +AG G + Sbjct: 934 STQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLT 993 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG A + A AG D S +AG + + AG ++ + Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLR 1053 Query: 486 HSSMEGMGGAMQS 498 G G ++ S Sbjct: 1054 SVLTAGYGSSLIS 1066 Score = 39.4 bits (91), Expect = 6e-05 Identities = 33/133 (24%), Positives = 44/133 (33%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S S G + +AG A + MAG A S AG +M G D S + Sbjct: 918 STSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLI 977 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG AG + A A + AG A D S +AG + + Sbjct: 978 AGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIR 1037 Query: 486 HSSMEGMGGAMQS 498 G G + S Sbjct: 1038 SFLTAGYGSTLIS 1050 Score = 37.8 bits (87), Expect = 1e-04 Identities = 37/138 (26%), Positives = 45/138 (32%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S G D +AG AG D S AG A AG G D S + Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLI 305 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG AG + ++ A A AG G A D S +AG A D Sbjct: 306 AGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGED 365 Query: 486 HSSMEGMGGAMQSHPASE 503 S G G + S+ Sbjct: 366 SSLTAGYGSTQTAQKGSD 383 Score = 37.0 bits (85), Expect = 3e-04 Identities = 32/117 (27%), Positives = 40/117 (34%) Query: 377 MAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGM 436 +AG AG + +AG AG D + +AG G + S+MAG Sbjct: 177 IAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMK 236 Query: 437 DHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMG 493 A G AG D S +AG A D S AG A G G Sbjct: 237 GSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYG 293 Score = 36.7 bits (84), Expect = 4e-04 Identities = 32/131 (24%), Positives = 49/131 (37%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S G S AG D +AG ++ AG + AG ++ A + TG + Sbjct: 862 SDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTST 921 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG + +AG ++ A MAG S+ A A + MAG D +A Sbjct: 922 AGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYG 981 Query: 486 HSSMEGMGGAM 496 + G + Sbjct: 982 STQTAGYQSTL 992 Score = 35.5 bits (81), Expect = 8e-04 Identities = 34/121 (28%), Positives = 41/121 (33%) Query: 378 AGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGMD 437 AG AG D S +AG AG + ++ AG AG AG D Sbjct: 290 AGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDD 349 Query: 438 HSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMGGAMQ 497 S +A AG D S AG A AG G A D S + G G Sbjct: 350 SSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQT 409 Query: 498 S 498 + Sbjct: 410 A 410 Score = 35.5 bits (81), Expect = 8e-04 Identities = 33/137 (24%), Positives = 44/137 (32%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S S G D +AG AG + AG A + G + G + S + Sbjct: 870 STSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLI 929 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG A + MA A S AG MA D S +AG A Sbjct: 930 AGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQ 989 Query: 486 HSSMEGMGGAMQSHPAS 502 + G G + +S Sbjct: 990 STLTAGYGSTQTAEHSS 1006 Score = 35.1 bits (80), Expect = 0.001 Identities = 28/116 (24%), Positives = 37/116 (31%) Query: 378 AGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGMD 437 AG A + G + AG + S +AG + MAG A Sbjct: 898 AGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQ 957 Query: 438 HSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMG 493 S A MAG D S +AG A + AG A+ + G G Sbjct: 958 SSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYG 1013 Score = 34.3 bits (78), Expect = 0.002 Identities = 30/116 (25%), Positives = 37/116 (31%) Query: 378 AGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGMD 437 G + AG D S +AG AG + AG AG S AG D Sbjct: 626 TGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGAD 685 Query: 438 HSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMG 493 S +A AG + AG A +G A D S + G G Sbjct: 686 SSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYG 741 Score = 33.6 bits (76), Expect = 0.003 Identities = 31/137 (22%), Positives = 43/137 (31%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S S G D +AG AG + AG A + G + G D S + Sbjct: 822 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLI 881 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG AG + A A + G A + S +AG A Sbjct: 882 AGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFK 941 Query: 486 HSSMEGMGGAMQSHPAS 502 + M G G + + S Sbjct: 942 STLMAGYGSSQTAREQS 958 Score = 33.2 bits (75), Expect = 0.004 Identities = 25/101 (24%), Positives = 40/101 (39%) Query: 376 SMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAG 435 SMAG D +AG ++ AG AG ++ A G + AG D +AG Sbjct: 968 SMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAG 1027 Query: 436 MDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGM 476 S + + AG + ++G+ A S ++G Sbjct: 1028 YGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGR 1068 Score = 32.8 bits (74), Expect = 0.005 Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 9/161 (5%) Query: 352 MQAAVPAVDPR-PLISMSDMGMDHGSMAGMDH-------GNMAGMDHSKM-AGMDHGNMA 402 + + V + P+ D ++ GS ++G S++ AG A Sbjct: 127 VTSEVKVGNRSLPVTDDIDATIESGSTQPTQTIEIATYGSTLSGTHQSQLIAGYGSTETA 186 Query: 403 GMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQ 462 G + +AG G D + +AG AG + S+MA AG Sbjct: 187 GDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGS 246 Query: 463 GGMADMDHSKMAGMDQGGMADMDHSSMEGMGGAMQSHPASE 503 G A D S +AG A D S G G + S+ Sbjct: 247 TGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSD 287 Score = 32.8 bits (74), Expect = 0.005 Identities = 30/121 (24%), Positives = 37/121 (30%) Query: 378 AGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGMD 437 AG + AG D S +AG AG + AG +G S AG D Sbjct: 674 AGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGAD 733 Query: 438 HSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMGGAMQ 497 S +A A S AG A G A D S + G G Sbjct: 734 SSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQT 793 Query: 498 S 498 + Sbjct: 794 A 794 Score = 32.0 bits (72), Expect = 0.008 Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 10/146 (6%) Query: 368 SDMGMDHGSM--AGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 SD+ +GS AG D +AG ++ AG + AG ++ A G + Sbjct: 286 SDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGT 345 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSK--------MAGMDQGGMADMDHSKMAGMD 477 AG D +AG ++ A D AG ++ AG G A D S +AG Sbjct: 346 AGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYG 405 Query: 478 QGGMADMDHSSMEGMGGAMQSHPASE 503 A + + G G + S+ Sbjct: 406 STQTAGEESTQTAGYGSTQTAQKGSD 431 Score = 32.0 bits (72), Expect = 0.009 Identities = 29/126 (23%), Positives = 42/126 (33%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S S G D +AG AG + AG A + AG G D S + Sbjct: 966 STSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLI 1025 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG +G+ A ++G+ AG ++ S AG +A Sbjct: 1026 AGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHR 1085 Query: 486 HSSMEG 491 S + G Sbjct: 1086 SSLIAG 1091 Score = 32.0 bits (72), Expect = 0.010 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 368 SDMGMDHGS--MAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S+ H S +AG + + G +AG AG + ++G D M G + Sbjct: 1078 SNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLI 1137 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKM 473 AG D AG D SK+ ++ + D SK+ + + D SK+ Sbjct: 1138 AGADSTQTAG-DRSKLLAGNNSYLTAGDRSKLTAGNDCILMAGDRSKL 1184 Score = 31.6 bits (71), Expect = 0.012 Identities = 29/116 (25%), Positives = 34/116 (29%) Query: 378 AGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKMAGMDHGSMAGMD 437 +G + AG D S +AG A S AG G S AG D Sbjct: 722 SGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGAD 781 Query: 438 HSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMDHSSMEGMG 493 S +A AG AG A G A D S + G G Sbjct: 782 SSLIAGYGSTQTAGYHSILTAGYGSTQTAQERSDLTTGYGSTSTAGADSSLIAGYG 837 Score = 31.6 bits (71), Expect = 0.013 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 10/146 (6%) Query: 368 SDMGMDHGSM--AGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S + +GS AG D +AG ++ AG + AG ++ A G + Sbjct: 622 SVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTST 681 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMA--------GMDQGGMADMDHSKMAGMD 477 AG D +AG ++ A + AG ++ A G A D S +AG Sbjct: 682 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYG 741 Query: 478 QGGMADMDHSSMEGMGGAMQSHPASE 503 A S G G + S Sbjct: 742 STQTASYHSSLTAGYGSTQTAREQSV 767 Score = 30.5 bits (68), Expect = 0.025 Identities = 31/138 (22%), Positives = 39/138 (28%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S G D +AG A S AG A G + G D S + Sbjct: 582 STGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLI 641 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG AG + A A AG A D S +AG A + Sbjct: 642 AGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYN 701 Query: 486 HSSMEGMGGAMQSHPASE 503 G G + S+ Sbjct: 702 SILTAGYGSTQTAQEGSD 719 Score = 30.5 bits (68), Expect = 0.029 Identities = 29/128 (22%), Positives = 38/128 (29%) Query: 366 SMSDMGMDHGSMAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM 425 S G + AG A + G + AG D S +AG G + Sbjct: 838 STQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILT 897 Query: 426 AGMDHGSMAGMDHSKMAEMDHGGMAGMDHSKMAGMDQGGMADMDHSKMAGMDQGGMADMD 485 AG A + AG + S +AG A + MAG A Sbjct: 898 AGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQ 957 Query: 486 HSSMEGMG 493 S G G Sbjct: 958 SSLTAGYG 965 Score = 30.1 bits (67), Expect = 0.032 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 377 MAGMDHGNMAGMDHSKMAGMDHGNMAGMDHSKMAGMDHGNMTGMDHSKM-AGMDHGSMAG 435 ++G D MAG +AG D AG D SK+ ++ +T D SK+ AG D MAG Sbjct: 1121 ISGADSVQMAGERGKLIAGADSTQTAG-DRSKLLAGNNSYLTAGDRSKLTAGNDCILMAG 1179 Query: 436 MDHSKMAEMDHGGMAGMDHSKMAG 459 D SK+ + + SK+ G Sbjct: 1180 -DRSKLTAGINSILTAGCRSKLIG 1202
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 5e-22 Identities = 36/117 (30%), Positives = 60/117 (51%) Query: 2 KLLVAEDEPKTGAYLQQGLAEAGFTVDRVLTGTDALQHALSESYDLLILDVMMPGLEGWE 61 +LVA+D+ L Q L+ AG+ V + + DL++ DV+MP ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRR 118 +L ++ A D+PVL ++A++ +K E GA DYL KPF +EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.009 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 15/120 (12%) Query: 296 QLPLFSGSRQDPMIAARRAQV---RQLEDEQEAALREHTAQLEADL----AEYQRLQRAV 348 +LP + +V L EQ + + Q E +L AE + + Sbjct: 164 KLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARI 223 Query: 349 TRSRDTLLPLAEQRVSLALADYRAGKSALEEVLTARRQRVEARLQDIDLQGQLAATAARL 408 R + + + + A VL + VEA +L ++L Sbjct: 224 NRYENLSRVEKSRLDDFS-SLLHKQAIAKHAVLEQENKYVEA-------VNELRVYKSQL 275
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 7e-08 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 15/144 (10%) Query: 194 ELVDRVARSGKVQNQVTLVAPSAGVIQALDLR-PGMTVTPGATLARINGIANV-WLEAAV 251 L +A++ + Q + AP + +Q L + G VT TL I + + A V Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 252 PEAQASGLHEGQAVEAHLPAYPGET---VQGKLTALLADADLQSRT---LRLRIELP--- 302 ++ GQ + A+P + GK+ + DA R + I + Sbjct: 373 QNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENC 432 Query: 303 ----NKDGRLRPGMTAQVSLRPGE 322 NK+ L GM ++ G Sbjct: 433 LSTGNKNIPLSSGMAVTAEIKTGM 456
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 680 bits (1756), Expect = 0.0 Identities = 215/1063 (20%), Positives = 432/1063 (40%), Gaps = 61/1063 (5%) Query: 5 LIRWSVSNRMLVLLATLFLMAWGIFSLRSLPIDALPDLSDAQVIIRTSYPGQAPQIVENQ 64 + + + + + + LM G ++ LP+ P ++ V + +YPG Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLTTTMLSVPGAKTVRGFSA-FGDSFVYVIFEDGTDLYWARSRVLEYLSQVQSRLPA 123 VT + M + + S G + + F+ GTD A+ +V L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 TAK-PALGPDATGVGWIYQYALVDRSGRHDLAQLRSLQDWFLRFELKTVPDVAEVASIGG 182 + + + + ++ V + + ++ L + V +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 183 MVKQYQVVLDPLRMASLGITQGEVANAIGKANQETGGG------VLEQGEAEFMVRASGY 236 ++ LD + +T +V N + N + G L + + A Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 237 LKTLDDFRAIPLRLAANGAPVMLGDVARVQLGPEARRGIGELDGEGEAVGGVVILRSGKN 296 K ++F + LR+ ++G+ V L DVARV+LG E I ++G+ A G + L +G N Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 297 AREAITHVKDKLETLKKSLPAGVELVTTYDRSQLIDRAVDNLSHKLIEEFIVVALVCAAF 356 A + +K KL L+ P G++++ YD + + ++ + L E ++V LV F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 LWHLRSSLVAIVSLPVGVLIALIIMRHQGINANIMSLGGIAIAIGAMVDAAVVMIENAHK 416 L ++R++L+ +++PV +L I+ G + N +++ G+ +AIG +VD A+V++EN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 RVEAWHARYPGQVLRGAEHWRVMTDAAVEVGPALFFSLMIITLSFVPVFTLQAQEGRLFA 476 + + ++ AL M+++ F+P+ G ++ Sbjct: 419 VMMEDKLPPKEATEKSMS----------QIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 477 PLAFTKTYAMAAAAGLAVTLVPVLMGYWIR--GPLPAEERNPLNRGLIRVYRPALE---- 530 + T AMA + +A+ L P L ++ E + + ++ Sbjct: 469 QFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTN 528 Query: 531 ---VVLRRPWMTLLGALAILLSSLWPLSHLGGEFLPPLDEGDLLYMPSALPGLSAQKASE 587 +L LL I+ + L FLP D+G L M G + ++ + Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 588 LLQRTDR--LIRTVPEVASVFGKAGRAESATDPAPLEMFETIVRLKPKDQW-RPGMSSEK 644 +L + L V SVF G + S F V LKP ++ S+E Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEA 645 Query: 645 LVEELDRTVRVPGLTNIWIPPIR-NRIDMLATGIKSPIGVKVAGSDLAQIDHTTLA---- 699 ++ + + + + ++ P I L T G D A + H L Sbjct: 646 VIHRA--KMELGKIRDGFVIPFNMPAIVELGTA----TGFDFELIDQAGLGHDALTQARN 699 Query: 700 --IERVAKSVPGVTSALAERLTGGRYVDLDIDRQAAARYGLNIADVQAIVAGAIGGETIG 757 + A+ + S L L++D++ A G++++D+ ++ A+GG + Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 758 ETVEGLARYPISVRYPREWRDSVDALRQLPVYTAQGGQITLGTVARVGIAEGPPMLKSEN 817 + ++ + V+ ++R + + +L V +A G + G P L+ N Sbjct: 760 DFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYN 819 Query: 818 ARPSGWVYIDVRGRDLS-SVVADLRRAVDR-EVKLNPGMSLSYSGQFEYLERANARLAWV 875 PS ++++G + D ++ KL G+ ++G + + + Sbjct: 820 GLPS----MEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPAL 875 Query: 876 VPATLAIIFVLLYLTFGRMGEALLIMGTLPFALTGGVWLLYLMGFNLSVATGVGFIALAG 935 V + ++F+ L + + +M +P + G + L V VG + G Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 936 VAAEFGVIMLIYLNNAWAERQANSEHTQDALLEAIREGAVQRIRPKAMTVAVIVAGLLPI 995 ++A+ ++++ + + E ++EA R+RP MT + G+LP+ Sbjct: 936 LSAKNAILIVEFAKDLM-------EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPL 988 Query: 996 LWSNGTGSEVMSRIAVPMVGGMLTAPLLSLFVIPAAYWLVRRR 1038 SNG GS + + + ++GGM++A LL++F +P + ++RR Sbjct: 989 AISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 75.6 bits (186), Expect = 7e-16 Identities = 93/522 (17%), Positives = 180/522 (34%), Gaps = 48/522 (9%) Query: 3 EKLIRWSVSNRMLVLLATLFLMAWGIFSLRSLPIDALPDLSDAQVIIRTSYPGQAP---- 58 + + + LL ++A + LP LP+ + P A Sbjct: 527 TNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERT 586 Query: 59 QIVENQVT-YPLTTTMLSVPGAKTVRGFSAFG----DSFVYVIFEDGTDLYWARSRVLEY 113 Q V +QVT Y L +V TV GFS G +V + + + Sbjct: 587 QKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 114 LSQVQSRLPATAKPALGP------DATGVGWIYQYALVDRSGRHDLAQLRSLQDWFLRFE 167 + + + L + P G + + L+D++G L ++ L Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAG-LGHDALTQARNQLLGMA 705 Query: 168 LKTVPDVAEV-ASIGGMVKQYQVVLDPLRMASLGITQGEVANAIGKA-NQETGGGVLEQG 225 + + V + Q+++ +D + +LG++ ++ I A +++G Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 226 EA-EFMVRA-SGYLKTLDDFRAIPLRLAANGAPVMLGDVARVQLGPEARR-----GIGEL 278 + V+A + + +D + +R +ANG V + R G+ + Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVR-SANGEMVPFSAFTTSHWVYGSPRLERYNGLPSM 824 Query: 279 DGEGEAVGGVVILRSGKNAREAITHVKDKLETLKKSLPAGVELVTTYDRSQLIDRAVDNL 338 + +GEA G +E L LPAG+ S + + Sbjct: 825 EIQGEAAPGTS-----------SGDAMALMENLASKLPAGIGY-DWTGMSYQERLSGNQA 872 Query: 339 SHKLIEEFIVVALVCAAFLWHLRSSLVAIVSLPVGVLIALIIMRHQGINANIMSLGGIAI 398 + F+VV L AA + ++ +P+G++ L+ ++ + G+ Sbjct: 873 PALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLT 932 Query: 399 AIGAMVDAAVVMIENAHKRVEAWHARYPGQVLRGAEHWRVMTDAAVEVGPALFFSLMIIT 458 IG A++++E A +E G+ + A + + + P L SL I Sbjct: 933 TIGLSAKNAILIVEFAKDLMEK-----EGKGVVEA----TLMAVRMRLRPILMTSLAFI- 982 Query: 459 LSFVPVFTLQAQEGRLFAPLAFTKTYAMAAAAGLAVTLVPVL 500 L +P+ + M +A LA+ VPV Sbjct: 983 LGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024