>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 188 bits (480), Expect = 6e-65 Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 3/140 (2%) Query: 10 QAARRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRL 69 +A +QRGFTL+EIMVV+ I+G+LA+L+VP +M ++A + A DI + AL +Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 70 DNGRYPTQDQGLNALIQKPTTDPIPNNWKDGGYLERLPNDPWGNSYKYLNPGVHGEIDVF 129 DN YPT +QGL +L++ PT P+ N+ GY++RLP DPWGN Y +NPG HG D+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 130 SYGADGKEGGESNDSDIGSW 149 S G DG+ G E DI +W Sbjct: 122 SAGPDGEMGTE---DDITNW 138
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 51.5 bits (123), Expect = 1e-10 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 51 RARGFTLLEMLVVLVIAGILVSVASLTLRRNPRTDLREEAQRIALLFETAGDEAQVRARP 110 R RGFTLLEM+++L++ G+ + L + + R + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 111 IAWRATEHGFRF---------------DIRTGDGWRPLRDD 136 ++F D +G W PLR Sbjct: 62 FGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAG 102
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.2 bits (68), Expect = 0.001 Identities = 10/26 (38%), Positives = 18/26 (69%) Query: 10 RSPARSRGFTMIEVLVALAIIAVALA 35 R+ + RGFT++E++V + II V + Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.3 bits (76), Expect = 3e-04 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 33 RGFTLIEMMIAITILAVIA-ILSWRGLDQIIRGREKVAAAMEDERVFAQMFDQMRIDARR 91 RGFTL+E+M+ I I+ V+A ++ + + ++ A+ D D ++D Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQK--AVSDIVALENALDMYKLDNHH 65 Query: 92 AATDDEAGQPAV 103 T ++ + V Sbjct: 66 YPTTNQGLESLV 77
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 32.0 bits (73), Expect = 0.004 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 144 AGQPGDAPFAPPTLVGDLGGGALYLAMGVLAGIVDAR-LRGKGQIVDAAIVDGSANLMNL 202 AG P ++V D+GGG +A+ L G+V + +R G D AI++ Sbjct: 151 AGLPVSEATG--SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGS 208 Query: 203 LLSIHAA 209 L+ A Sbjct: 209 LIGEATA 215
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.1 bits (68), Expect = 0.003 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%) Query: 106 GGILVYDQFVTP----PTPQPVQQRRLRWGAHGRSNNGDNFYVV 145 GG + P PTPQPV R + +GA+GRS + V Sbjct: 452 GGTIAAAPMGDPNASIPTPQPVHYRPM-FGAYGRSRTNSSVTFV 494
>PERTACTIN#Pertactin signature. Length = 922 Score = 33.2 bits (75), Expect = 0.003 Identities = 24/93 (25%), Positives = 31/93 (33%) Query: 81 PKAGQRSPAGATPLAPRAPLPSANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAAQ 140 P A + +P P+ P P P P P +A AP P +AAA AA Sbjct: 568 PPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVN 627 Query: 141 AAQAAQANAAALNADEAADLDLPSLTAHEAAAG 173 A+ A L L + A G Sbjct: 628 TGGVGLASTLWYAESNALSKRLGELRLNPDAGG 660
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 490 bits (1263), Expect = e-171 Identities = 204/576 (35%), Positives = 320/576 (55%), Gaps = 46/576 (7%) Query: 1 MDIKRTVLWVIFFMSAVMLFDNWQRSHGRPSMFFPNVTQTNTASNATNGNGASGANAAAA 60 MD +R +L + + M++ W++ Q T + T Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQ-----PQAQQTTQTTTT------------- 42 Query: 61 ANALPAAATGAAPATTAPAAQAQLVRFSTDVYNGEIDTRGGTLAKLTLTK---AGDGKQP 117 AA AA + Q +L+ TDV + I+TRGG + + L + QP Sbjct: 43 ------AAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQP 96 Query: 118 DLSVTLFDHTANHTYLARTGLLGGDFPN-----HNDVYAQVAGPTSLAADQNTLKLSFES 172 L + + Y A++GL G D P+ +Y LA QN L++ Sbjct: 97 ---FQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTY 153 Query: 173 PVKGGVKVVKTYTFTRGSYVIGVDTKIENVGAAPVTPSVYMELVRD-----NSSVETPMF 227 G KT+ RG Y + V+ ++N G P+ S + +L + + + F Sbjct: 154 TDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNF 213 Query: 228 S-HTFLGPAVYTDQKHFQKITFGDIDKNKADYVTSADNGWIAMVQHYFASAWIPQSGAKR 286 + HTF G A T + ++K F I N+ ++S GW+AM+Q YFA+AWIP + Sbjct: 214 ALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISS-KGGWVAMLQQYFATAWIPHNDGTN 272 Query: 287 DIYVEKIDPTLYRVGVKQPVAAIAPGQSADVSARLFAGPEEERMLEGIAPGLELVKDYGW 346 + Y + + +G K + PGQ+ +++ L+ GPE + + +AP L+L DYGW Sbjct: 273 NFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGW 332 Query: 347 VTIIAKPLFWLLEKIHGFVGNWGWAIVLLTLLIKAVFFPLSAASYKSMARMKEITPRMQA 406 + I++PLF LL+ IH FVGNWG++I+++T +++ + +PL+ A Y SMA+M+ + P++QA Sbjct: 333 LWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA 392 Query: 407 LRERFKSDPQKMNAALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLASVEMRGAPWV 466 +RER D Q+++ +M LYK EKVNP GGC P++IQ+P+F++LY++L+ SVE+R AP+ Sbjct: 393 MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA 452 Query: 467 LWIHDLSQRDPYFILPVLMAVSMFVQTKLNPTP-PDPVQAKMMMFMPIAFSVMFFFFPAG 525 LWIHDLS +DPY+ILP+LM V+MF K++PT DP+Q K+M FMP+ F+V F +FP+G Sbjct: 453 LWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSG 512 Query: 526 LVLYYVVNNVLSIAQQYYITRTL---GGAAAKKKAS 558 LVLYY+V+N+++I QQ I R L G + +KK S Sbjct: 513 LVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS 548
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.6 bits (84), Expect = 2e-04 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 9/123 (7%) Query: 191 IDFLEAADARGKLAHIR--ERLAHVLGDARQGALLREGLSV----VLAGQPNVGKSSLLN 244 + L K +R + + + ++ G VL G +GKS+L+N Sbjct: 555 VHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLIN 614 Query: 245 ALAGAELAIVTPI-AGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303 L G + T GT +D Q I L + R + E K + Sbjct: 615 TLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT--AFRRADAEAVKAFFSSRKDRY 672 Query: 304 ERA 306 A Sbjct: 673 RGA 675
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.7 bits (95), Expect = 8e-07 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 11/113 (9%) Query: 37 FEEPYETFTELSQLYDQHVHDQRERRFVAFDSDGELVGLVELI----ELDYIHRRGEFQI 92 F +PY E + +V ++ + F+ + + +G +++ I I Sbjct: 42 FSKPYFKQYEDDDMDVSYVEEEGKAAFLYY-LENNCIGRIKIRSNWNGYALIE-----DI 95 Query: 93 IIAPNRQGRGFATRATRLAVEYAFKVLNLRKLYLIVDKSNVAAIRVYEKCGFK 145 +A + + +G T A+E+A K + L L N++A Y K F Sbjct: 96 AVAKDYRKKGVGTALLHKAIEWA-KENHFCGLMLETQDINISACHFYAKHHFI 147
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 32.4 bits (73), Expect = 0.002 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%) Query: 5 LTLLLTMTFGFVQAAELHLANWPDWMP--------PELLKKFEKETGIKTTLDIYDSDAT 56 L+ L TM F A++ W+ E+ KKFEK+TGIK T++ D Sbjct: 12 LSALTTMMFSASALAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEE 71 Query: 57 LLSKLQAGGGGYDVVVAGDYYVQVFAKNGLVRKL 90 ++ A G G D++ +A++GL+ ++ Sbjct: 72 KFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI 105
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 2e-06 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 67 RHAFINALFVRPAWHGAGVGREMLERALAWLREQGSESVSL-VTDPGSRADGFYQHLGWI 125 +A I + V + GVG +L +A+ W +E + L D A FY +I Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 126 RGELDSY 132 G +D+ Sbjct: 148 IGAVDTM 154
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 71.4 bits (174), Expect = 1e-15 Identities = 65/198 (32%), Positives = 90/198 (45%), Gaps = 6/198 (3%) Query: 259 ALAALRDAADSARATLAASSAPAALQQAA-PAALAANAGAAAASAAPSLAPPVGTPDWTD 317 L A++ S P+ + AA P AAP L+ P+G+ +W Sbjct: 183 PAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQ 242 Query: 318 ALSQKVVFLSNAHQQSAELTLNPPDLGPLQVVLRVADNHAHALFVSQHAQVRDAVEAALP 377 +LSQ + + QQSAEL L+P DLG +Q+ L+V DN A VS H VR A+EAALP Sbjct: 243 SLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALP 302 Query: 378 KLREAMEAGGLGLGSASVSDGGFASAQQQQTPQRQSSDGSATRRAFGASTADAALDELAA 437 LR + G+ LG +++S F+ QQ + Q+QS +A D L Sbjct: 303 VLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQR-TANHEPLAGEDDDT----LPV 357 Query: 438 ASSSGATRRTVGMVDTFA 455 S VD FA Sbjct: 358 PVSLQGRVTGNSGVDIFA 375
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 59.8 bits (144), Expect = 2e-14 Identities = 43/140 (30%), Positives = 74/140 (52%) Query: 1 MAQSFPLQLLLERAQDDLDTAAKQLGRAQRERTDAQAQLDALMRYRDEYRVRFAESAQSG 60 MA+ L L + A+ +++ AA+ LG +R A+ QL L+ Y++EYR +G Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MPAGNWRNFQAFLDTLDAAIEQQRRVLAAAQTRIDAARPEWQAKKRTLGSYEILQARGAR 120 + + W N+Q F+ TL+ AI Q R+ L ++D A W+ KK+ L +++ LQ R + Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 QDAQRAAKREQRDADEHAAK 140 + +Q+ DE A + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 109 bits (273), Expect = 1e-31 Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 37 AAAALAAELQRVRDAAHAEGLAAGHVEGQALGYQAGYEQGRAKGFDEGQAEAHTHAAQLA 96 A +L +L +++ AH +G AG EG+ G++ GY++G A+G ++G AEA + A + Sbjct: 36 AEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIH 95 Query: 97 A----LAASFRDALAGVERDLADDIATLALEIAQQVVRQHVQHDPAALIAAAREVLAAEP 152 A L + F+ L ++ +A + +ALE A+QV+ Q D +ALI +++L EP Sbjct: 96 ARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEP 155 Query: 153 ALAGAPHLIVNPADLPVVEAYLKDELDTLGWSVRTDTSIERGGCRAHASTGEIDATLTTR 212 +G P L V+P DL V+ L L GW +R D ++ GGC+ A G++DA++ TR Sbjct: 156 LFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATR 215 Query: 213 WERV 216 W+ + Sbjct: 216 WQEL 219
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 298 bits (765), Expect = e-102 Identities = 114/324 (35%), Positives = 191/324 (58%) Query: 5 GLNKSALLLMSIGEEEAAQVFKFLAPREVQKIGAAMAALKNVTREQVEDVLNDFVQEAEK 64 G K+A+LL+SIG E +++VFK+L+ E++ + +A L+ +T E ++VL +F + Sbjct: 17 GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76 Query: 65 HTALSLDSSEYIRTVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSAAVAELIKNEH 124 + +Y R +L K+LG KA +I+ + + E ++ D A + I+ EH Sbjct: 77 QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136 Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVLLRIATLDGIQPTALRELDDVLTGLLSGS 184 PQ IA IL +LD +AS I S ++ +V RIA +D P +RE++ VL L+ Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196 Query: 185 DNLKRAPMGGIRTAAEILNFMTSVHEEAVIENVKQYDPDLAQKIIDQMFVFENLLDLEDR 244 + GG+ EI+N E+ +IE++++ DP+LA++I +MFVFE+++ L+DR Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256 Query: 245 AIQLLLKEVESEALIIALKGAPPALRQKFLSNMSQRAAELLAEDLDARGPVRVSEVETQQ 304 +IQ +L+E++ + L ALK +++K NMS+RAA +L ED++ GP R +VE Q Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316 Query: 305 RKILQVVRNLAESGQIVIGGKAED 328 +KI+ ++R L E G+IVI E+ Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 468 bits (1205), Expect = e-162 Identities = 254/562 (45%), Positives = 360/562 (64%), Gaps = 37/562 (6%) Query: 53 LSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVP 112 L+R++ NPR+P ++ + A+A +VA+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+P Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 113 YKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRAL 172 Y+FA+ GAI VPA++VHE RL+LA GLPKGG+VGFEL+D +KFGISQF+EQVNYQRAL Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135 Query: 173 EGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTR 232 EGEL RT+E++ V++ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ AV Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 233 MVSSSVPDMPAKNVTIVDQDGNLLTQT-ASATGLDASQLKYVQQIERNTQKRIDAILAPI 291 +VSS+V +P NVT+VDQ G+LLTQ+ S L+ +QLK+ +E Q+RI+AIL+PI Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPI 255 Query: 292 FGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPGAL 351 G GN +QV+A +DF+ EQT E Y PNG ++ +RS+Q + S ++ GVPGAL Sbjct: 256 VGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGAL 315 Query: 352 SNTPPQPASAPIVA-------------SNGQPAGPAATPVSDRKDSTTNYELDKTVRHVE 398 SN P P API ++ +A P S +++ T+NYE+D+T+RH + Sbjct: 316 SNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTK 375 Query: 399 QSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNV 458 ++G I+RLSVAVVVNY+ D K PL AD++ Q++ L ++AMG+ +KRGD++NV Sbjct: 376 MNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNV 431 Query: 459 VNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFP 515 VNS FSA + LP+W+Q I+ +WL V A L+ VRP L R Sbjct: 432 VNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAK 491 Query: 516 PPAEPAAAAVPALDGPDDVLALDGLPSPDKKQLAEEDEEHPALLAFENERNRYERNLDYA 575 E A + + L+ D + N+R E Sbjct: 492 AAQEQAQVRQETEEAVEVRLSKDEQLQQRR----------------ANQRLGAEVMSQRI 535 Query: 576 RTIARQDPKIVATVVKNWVSDE 597 R ++ DP++VA V++ W+S++ Sbjct: 536 REMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 61.2 bits (148), Expect = 9e-16 Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 8/111 (7%) Query: 3 APVNGIASALQQMQAMAAQAAGGASPATSLAGSGAASAGSFASAMKASLDKISGDQQKAL 62 + + GI + Q+QA A A S SFA + A+LD+IS Q A Sbjct: 1 SAIQGIEGVISQLQATAMSARAQES--------LPQPTISFAGQLHAALDRISDTQTAAR 52 Query: 63 GEAHAFEIGAQNVSLNDVMVDMQKANIGFQFGLQVRNKLVSAYNEIMQMSV 113 +A F +G V+LNDVM DMQKA++ Q G+QVRNKLV+AY E+M M V Sbjct: 53 TQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 62.9 bits (153), Expect = 4e-15 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 10 AVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIP 68 A+ +G P V K + + + A + G+ + + +L +D IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 69 PQLYQAVAELLAWLYALERDA 89 + +A AE+L WL + Sbjct: 328 AEQIEATAEVLRWLERQNIEK 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 3e-21 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 5 ILLVDDHAIVRQGIRQLLIDRGIAREVKEAECGGDALVIAEKSEFDVILLDISLPDMNGI 64 IL+ DD A +R + Q L G +V+ + D+++ D+ +PD N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 EVLKRLKRRLPSTPVLMFSMYREDQFAVRALKAGAAGYLSKTVNAAQMVSAISQ 118 ++L R+K+ P PVL+ S A++A + GA YL K + +++ I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.029 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKQLMLKTLTI 139 V+ +E N+ + Y AN + L TA + + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.2 bits (78), Expect = 0.001 Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 356 ISAPGSTNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 SA L S V+L + L Q+ Y ANAQ ++T + LIN+ Sbjct: 488 SSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 29.9 bits (67), Expect = 0.018 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGST 36 +SGL A + L+ NNI++ N G+ T Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.019 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 4 LIYTAMTGATQSLEQQSVVANNLANASTTGFRAQ 37 LI AM+G + + +NN+++ + G+ Q Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 1e-06 Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 213 TLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQM 260 L S VN+ +E N+ + Q+ Y N++ + T++ + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 40.3 bits (94), Expect = 5e-06 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%) Query: 4 SLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQTELP 63 + A +G+NA QA ++ SNN+++ + G+ RQ + + L Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT--------------RQTTIMAQANSTLG 48 Query: 64 SGLQLGTGVQQVATERLYTQ 83 +G +G GV +R Y Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 205 bits (522), Expect = 1e-68 Identities = 128/222 (57%), Positives = 156/222 (70%), Gaps = 7/222 (3%) Query: 25 AALAAAALALAGCAQIPREPITQQPMSAMPPMPPAMQAPGSIY---NPGYAG-RPLFEDQ 80 A + L+L GCA IP P+ Q SA P P A GSI+ P G +PLFED+ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69 Query: 81 RPRNVGDILTIVIAENINATKSSGANTNRQGNTSFDVPTAG-FLGGLF--NKANLSAQGA 137 RPRN+GD LTIV+ EN++A+KSS AN +R G T+F T +L GLF +A++ A G Sbjct: 70 RPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGG 129 Query: 138 NKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGIVNPNTI 197 N F GGA+A+NTF+GT+TVTV VL NGNL V GEKQ+ INQG EF+RFSG+VNP TI Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 198 SGQNSVYSTQVADARIEYSAKGYINEAETMGWLQRFFLNIAP 239 SG N+V STQVADARIEY GYINEA+ MGWLQRFFLN++P Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 371 bits (954), Expect = e-129 Identities = 164/392 (41%), Positives = 225/392 (57%), Gaps = 27/392 (6%) Query: 10 RVVRPLVAARRRAAACCALAACMLALAFAPAAARAERLKDLAQIQGVRDNPLIGYGLVVG 69 RV+R + AA +A L+ PA A R+KD+A +Q RDN LIGYGLVVG Sbjct: 2 RVLRIIAAALVFSALPF--------LSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVG 53 Query: 70 LDGTGDQTMQTPFTTQTLANMLANLGISINNGSANGGGSSAMTNMQLKNVAAVMVTATLP 129 L GTGD +PFT Q++ ML NLGI+ G +N KN+AAVMVTA LP Sbjct: 54 LQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQSN-----------AKNIAAVMVTANLP 102 Query: 130 PFARPGEAIDVTVSSLGNAKSLRGGTLLLTPLKGADGQVYALAQGNMAVGGAGASANGSR 189 PFA PG +DVTVSSLG+A SLRGG L++T L GADGQ+YA+AQG + V G A + + Sbjct: 103 PFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAAT 162 Query: 190 VQVNQLAAGRIAGGAIVERSVPNAVAQMNGVLQLQLNDMDYGTAQRIVSAVNS----SFG 245 + + R+ GAI+ER +P+ L LQL + D+ TA R+ VN+ +G Sbjct: 163 LTQGVTTSARVPNGAIIERELPSKFKDSV-NLVLQLRNPDFSTAVRVADVVNAFARARYG 221 Query: 246 AGTATALDGRTIQLTAPADSAQQVAFMARLQNLEVSPERAAAKVILNARTGSIVMNQMVT 305 A D + I + P + MA ++NL V + AKV++N RTG+IV+ V Sbjct: 222 DPIAEPRDSQEIAVQKPRVA-DLTRLMAEIENLTVETD-TPAKVVINERTGTIVIGADVR 279 Query: 306 LQNCAVAHGNLSVVVNTQPVVSQPGPFSNGQTVVAQQSQIQLKQDNGSLRMVTAGANLAE 365 + AV++G L+V V P V QP PFS GQT V Q+ I Q+ + + G +L Sbjct: 280 ISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSKV-AIVEGPDLRT 338 Query: 366 VVKALNSLGATPADLMSILQAMKAAGALRADL 397 +V LNS+G +++ILQ +K+AGAL+A+L Sbjct: 339 LVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 226 bits (578), Expect = 5e-75 Identities = 124/297 (41%), Positives = 173/297 (58%), Gaps = 15/297 (5%) Query: 15 ALDVQGFDALRSKATAAAPREGVKMVAGQFDAMFTQMMLKSMRDATPSDGLLDSSSSKMY 74 A D Q + L++KA P ++ VA Q + MF QMMLKSMRDA P DGL S +++Y Sbjct: 12 AWDAQSLNELKAKA-GEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLY 70 Query: 75 TSMLDQQLAQQMSS-KGIGVADALTKQLLRNANVAPDAQGEGGLAAMNALAKAYANSNGA 133 TSM DQQ+AQQM++ KG+G+A+ + KQ+ + ++ + Y N + Sbjct: 71 TSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALS 130 Query: 134 PGNGALAGTRGYSAASALTPPLKGNGNSAQADAFVEKMALAAQAASAATGIPARFIVGQA 193 P + + AF+ +++L AQ AS +G+P I+ QA Sbjct: 131 ------------QLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQA 178 Query: 194 ALESGWGKREIRGANGESSYNVFGIKATKGWTGRTVSAVTTEYVNGKPHRVVAQFRAYDS 253 ALESGWG+R+IR NGE SYN+FG+KA+ W G TTEY NG+ +V A+FR Y S Sbjct: 179 ALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSS 238 Query: 254 YEHAMTDYANLLKNNPRYASVLNAGHNAEGFAHGMQKAGYATDPHYAKKLISIMQQI 310 Y A++DY LL NPRYA+V A +AE A +Q AGYATDPHYA+KL +++QQ+ Sbjct: 239 YLEALSDYVGLLTRNPRYAAVTTAA-SAEQGAQALQDAGYATDPHYARKLTNMIQQM 294
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 236 bits (603), Expect = 2e-71 Identities = 162/444 (36%), Positives = 253/444 (56%), Gaps = 12/444 (2%) Query: 50 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 109 ++L+N +SGLNAA L T NIS+ GY+ + + A+A+ + G++ GV Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 110 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTAGIATAITNYFTGLQTVA 169 V+R+Y+ +++NQL AAQTQ S L+ Y +++++N + + T+ +AT + ++FT LQT+ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 170 NNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQLNE 229 +NA DP+ARQ + ++ L +Q Q + VN + +V QIN+Y QIA LN+ Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 230 QIA--SASSQGQPPNQLLDQRDLAVSKLSQLAGVQV-VQSNGNYSVFLSGGQPLVVGNAS 286 QI+ + G PN LLDQRD VS+L+Q+ GV+V VQ G Y++ ++ G LV G+ + Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 287 YQLATVASPSDPSELTI-VSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQ 345 QLA V S +DPS T+ G AG+ + +P+ L G+LGG+L FRSQ LD + Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIE------IPEKLLNTGSLGGILTFRSQDLDQTR 294 Query: 346 AQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGT 405 LG LA++FA N Q+ G D +G+ G FA+G PAV N N G + + D + Sbjct: 295 NTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDAS 354 Query: 406 QPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTV 465 +DY +S+D ++ +T R + T TP + + GL+L+ + TP DSFT+ Sbjct: 355 AVLATDYKISFDNNQWQVT-RLASNTTFTVTPDAN-GKVAFDGLELTFTGTPAVNDSFTL 412 Query: 466 LPTRGALDGFSLATANGSAIAAAS 489 P A+ + + + IA AS Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMAS 436 Score = 84.6 bits (209), Expect = 4e-19 Identities = 46/105 (43%), Positives = 66/105 (62%) Query: 608 GTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQIT 667 G +D RN AL L ++ G + AYA V+ IGN + LK SSA Q +V Q++ Sbjct: 441 GDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLS 500 Query: 668 QAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSVFQTVLGL 712 QQS+SGVN +EE NL ++QQ Y ANA+V+QTAN++F ++ + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLAGELLIN#Flagellin signature. Length = 507 Score = 41.2 bits (96), Expect = 6e-06 Identities = 55/369 (14%), Positives = 113/369 (30%), Gaps = 10/369 (2%) Query: 16 MNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQYTQNQTIVQTALQT 75 +N Q+ ++ +++SSG+ + + D+ A A + ++ L Q ++N + QT Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 76 EDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLLTLANTADGAGNYL 135 + L +N+ L + + A +G SDSD ++ +IQ + + ++N G + Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKV 136 Query: 136 FAGFQPTTQPFSNKPGGGVTY------AGDYGARAVQIADTRTVSQGDNGANVFMSVPFL 189 + G +T G + + + GD ++ + Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196 Query: 190 GSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDNSVTPPTT 249 + +G + + T A T D T +T Sbjct: 197 TYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKST 256 Query: 250 TAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLD----TVIAALKS 305 + G GG+ V T V T++ T+ A + Sbjct: 257 AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT 316 Query: 306 PVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQTTN 365 + A+T ++ S + T S E + T+ Sbjct: 317 AGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAE 376 Query: 366 SLSNLTDTN 374 +N Sbjct: 377 YTANAAGDK 385
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.3 bits (63), Expect = 0.021 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 110 YVQQGMMPVTAGLVVASAVLISEASNRSALQWGITAAVAAL-AYRTRVHPLWLLAGGALA 168 Y G++ T GL +A+LI E + + G A L A R R+ P+ + + + Sbjct: 925 YFMVGLL-TTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 169 GLV 171 G++ Sbjct: 984 GVL 986
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 29.0 bits (64), Expect = 0.021 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Query: 21 VLHPLAGRPLLSHVIDTARALAPSRLVVVIGHGAEQVRAAVAAP 64 V PLAG L S A APS LV+ +GHG AA AAP Sbjct: 18 VCGPLAGASLASPATAPASLYAPSALVLTVGHGES---AATAAP 58
>cloacin#Cloacin signature. Length = 551 Score = 29.3 bits (65), Expect = 0.042 Identities = 23/86 (26%), Positives = 27/86 (31%), Gaps = 23/86 (26%) Query: 424 GRGANAGGGAGDDDRAPRAAHDSG---RGGDVKGGGKGGSKGGVK--------GGGTDDH 472 GRG N G AH + GG G GG+ G GGG+ Sbjct: 6 GRGHNTG------------AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG 53 Query: 473 GHWVDKGYKGGEGNAADGAGRRRNGG 498 HW G G + G GG Sbjct: 54 IHWGGGSGHGNGGGNGNSGGGSGTGG 79
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.041 Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 8/136 (5%) Query: 2 GTTIRDVAQAANVSIGTVSRALKNQPGLSEATRARIVE-----IAHRMNYDPTQLRPRIK 56 T++ ++A+AA V+ G + K++ L P ++ Sbjct: 31 STSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLR 90 Query: 57 -RLTFLLHRQHNNFATTPFFSHVLHGVEDACRERGIVPSLLTTGPTDDVIRQMRPHAPDA 115 L +L + H E E +V + ++ Sbjct: 91 EILIHVLESTVTEERRRLLMEIIFHKCEFV-GEMAVVQQAQRNLCL-ESYDRIEQTLKHC 148 Query: 116 IAVAGFMEPETLEALA 131 I A Sbjct: 149 IEAKMLPADLMTRRAA 164
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.3 bits (81), Expect = 3e-04 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 3/99 (3%) Query: 55 PVQVELLKPQPIERAPAPEKPAADRPRAAPKRAARASAPPAHAPRASAPVSSAAESSTES 114 P Q P+P+ +P + P+ AP + P P+ V + Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKR---DV 118 Query: 115 SAESPAAASGAEPASAADGQAAGATSGAAAGASGASAPP 153 AS E + A ++ AT+ + + ++ P Sbjct: 119 KPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGP 157
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.003 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Query: 68 PALETAPLNAPGAAPAAASDSAPGSPAASAPASAVAPASMPASVAAPAAPA----PSSPP 123 A E A L A A+ + D+ PG+ A A + P AP PS+ Sbjct: 451 QAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGE 510 Query: 124 AAQP 127 A P Sbjct: 511 TANP 514
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 67.6 bits (165), Expect = 2e-14 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 399 QADGGAAANAASGAAAQTQAQAPALPAAIYFETGKSELPADAKDAIAAAAEYVRAH--PD 456 Q + A A + Q + L + + F K+ L + + A+ + D Sbjct: 193 QGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKD 252 Query: 457 AKLALSGFTDKTGSADANAELAKRRAQVVRDALKTAGVAEDRI 499 + + G+TD+ GS N L++RRAQ V D L + G+ D+I Sbjct: 253 GSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKI 295
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 31.8 bits (72), Expect = 0.003 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%) Query: 163 YGEFFATGILIMAFMSIGVVSTA-TTIATLRERNTFKMYVCFPVSRF-VFLASLIVSRVI 220 Y F A G++ + M+ T + + T++ + + + L + + Sbjct: 65 YTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATK 124 Query: 221 LMLAASVTLMLAARYLFQVPLPLWSLRALRAIPVVLLGAAMLLSLGTLLASRARSLAAAE 280 LA + ++AA + SL L A+PV+ L SLG ++ + A S Sbjct: 125 AALAGAGIGVVAAALGY---TQWLSL--LYALPVIALTGLAFASLGMVVTALAPSYDYFI 179 Query: 281 AWCNLIYFPLLFFSDLTIPLRAAPHWLRVVLLVLP 315 + L+ P+LF S P+ P + LP Sbjct: 180 FYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLP 214
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 513 bits (1323), Expect = e-175 Identities = 194/567 (34%), Positives = 312/567 (55%), Gaps = 7/567 (1%) Query: 303 PNTLAGVCAAPGIAVGTLVRWDDAQIVPPELASGTPAAESRLLDRALAEVDAQLETTVRE 362 + + G+ A+ G+A+ + + + + + E L AL + +L + Sbjct: 2 HHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 363 ASRRGAIGEAGIFAVHRVLLEDPALVDAARDLI-SLGKSAGYAWRETIRAQTAVLADVDD 421 +A IFA H ++L+DP LVD + I + +A YA +E ++ +D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 422 TLLAERAADLRDIDKRVLRAL-GYASASARELPAEAVLAAEEFTPSDLASLDRERVAALV 480 + ERAAD+RD+ KRVL L G + S + E V+ AE+ TPSD A L+++ V Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 481 MARGGATSHAAIIARQLGIPALVAVGDALYAIAQRTQVVVDASAGRLEYAPSALDVERAR 540 GG TSH+AI++R L IPA+V + I V+VD G + P+ +V+ Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 541 HERQRLAGVREANRRMSGEAALTRDGHRIEVAANIATLDDARVALDNGADAVGLLRTELM 600 +R ++ ++ GE + T+DG +E+AANI T D L NG + +GL RTE + Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 601 FIHRQAAPTASEHQQSYQSIVDALQGRAAIIRTLDVGADKEVDYLTLPPEPNPALGLRGI 660 ++ R PT E ++Y+ +V + G+ +IRTLD+G DKE+ YL LP E NP LG R I Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 661 RLAQVRPDLLDDQLRGLLAVKPYGSVRILLPMVTDVGELVRIRKRIDD-----FARAMGR 715 RL + D+ QLR LL YG+++++ PM+ + EL + + + + + + Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 716 AQAVEVGVMIEVPSAALLADQLAQHADFLSIGTNDLTQYTLAMDRCQADLAAQADGLHPA 775 + ++EVG+M+E+PS A+ A+ A+ DF SIGTNDL QYT+A DR ++ HPA Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 776 VLRLVDATVRGAEKHGKWVGVCGALGGDPVAVPVLVGLGVTELSVDPVSVPGIKAQVRRL 835 +LRLVD ++ A GKWVG+CG + GD VA+P+L+GLG+ E S+ S+ ++Q+ +L Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 836 DYQLCRQRAQDLLALESAQAVRAASRE 862 + + AQ L L++A+ V ++ Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKK 568
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.023 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 176 VVVDGAAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPP--AAAQPVANRALPSVKRQR 233 V + G P+ + DD + + V +LPAD SP ++ P A V R + VK +R Sbjct: 134 VALYGVLPSQIAKDDPNMMSKIVTSLPADDITESPVSSLPLDKATVNVNVRVVDDVKDER 193 Query: 234 ALPGALDLRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGG 293 + GV +++P + A ER G PV + PA + G Sbjct: 194 QNISVVS--GVPMSVPVVD----AKPTERPGVFTASIPGAPVLNISVNNSTPAVQTLSPG 247
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 34.0 bits (78), Expect = 9e-05 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 44 KRETKQQFIDAITAGRRRYRQIEIQSQDVL-PVGDATYVVAG 84 KRE K+ +RR EIQS+++ V ++ VVA Sbjct: 222 KREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAN 263
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 84.9 bits (210), Expect = 3e-20 Identities = 77/368 (20%), Positives = 143/368 (38%), Gaps = 31/368 (8%) Query: 7 RATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVL-VGIALGAYGVTQSLLYIFYG 65 R + + AL +G+ +IMPV + + +V GI L Y + Q G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 66 WASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGM-GAVSSAVLAFIADLT 124 SD+FGR+PV+ L A+ + A A + + +GR++ G+ GA + A+IAD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 125 SEHNRTKAMAMVGGSIGMSFAVAIVGAPI--VFHWVGMSGLFAIVGALSVAAIGVVLWVV 182 R + + G + G + + F AL+ +++ Sbjct: 125 DGDERARHFGFMSACFGFGM---VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 183 PDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVA----- 237 P++ + P E L+ + R G+ V+ A F+ + + G +P A Sbjct: 182 PESHKGERRPLR-REALNPLASFRWARGMTVVAALMAVFFI----MQLVGQVPAALWVIF 236 Query: 238 ----SHWQ-----VYLPVMGL--AFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLG 286 HW + L G+ + + VA + G + ++L G+ A G +LL Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYILLA 295 Query: 287 VATHTILIVAAILFVYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGV 346 AT + + V I + +++S+ R+G G S+ +G + Sbjct: 296 FATRGWMAF--PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 347 VGGVLLKH 354 + + Sbjct: 354 LFTAIYAA 361
>cloacin#Cloacin signature. Length = 551 Score = 42.8 bits (100), Expect = 3e-07 Identities = 30/71 (42%), Positives = 35/71 (49%), Gaps = 9/71 (12%) Query: 109 GGRGGSGGGGGGGDDGGY-------GGGGGRDMERGGGGGRASGGGG--AGARSGGGGGA 159 GG G G GGG D G+ GGG G + GGG G +GGG +G SG GG Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 160 SRPSAPAGGGF 170 S +AP GF Sbjct: 82 SAVAAPVAFGF 92 Score = 33.1 bits (75), Expect = 5e-04 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 109 GGRGGSGGGGGGGDDGGYGGGGGRDMERGGGGGRASGGGGAGARSGGGGGASRPSAPAGG 168 GG GSG GGG G GGG G GGG +GG + + G S P G Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNG-----NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAG 101 Query: 169 G 169 G Sbjct: 102 G 102
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 29.5 bits (65), Expect = 0.049 Identities = 15/54 (27%), Positives = 26/54 (48%) Query: 79 QLRVLPRGITGLLNISKLTPDALAIIRATALALTHLEQAEKKVDDESPLPILDA 132 QLR + +IS ++ A+A++ A + L QA+ K+ + L DA Sbjct: 105 QLREQQAEVGKFFDISGMSSSAVALLAAANTLMLTLNQADSKLSGKLSLVSFDA 158
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 60.1 bits (145), Expect = 7e-11 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 41/208 (19%) Query: 12 LNLPSGGGSVSGDGGDFSVDLNTGTATLKFDLTVPAGPNGITPPHTLQYSAGAGDGAFGI 71 LP GG ++S G D G A++ L + A G P L YS+G G+G FG+ Sbjct: 18 PFLPKGGKALSQSGPD-------GLASITLPLPISAE-RGFAPALALHYSSGGGNGPFGV 69 Query: 72 GWSLGLMTIRRR-----------------------ITPATGAAEPAPPGACSLVGVGELV 108 GWS M+I R T +TG A P P + V Sbjct: 70 GWSCATMSIARSTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDA-PNPVTCFAYGDVSFPQ 128 Query: 109 DMGARRFRPIVDATGLLIEFTGAS------WTATDKTDTQYTLGTSANARIG---GGALP 159 R++P +++ +E+ + W D + LG +A AR+ + Sbjct: 129 SYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHT 188 Query: 160 AAWLVDRCADSAGNAIAYTWLDVGGARV 187 A WLV+ AG I Y++L G V Sbjct: 189 AQWLVEESVTPAGEHIYYSYLAENGDNV 216
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 34.7 bits (79), Expect = 0.002 Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 9/80 (11%) Query: 164 SQGNSAASSVAVTRAKAVDAAVVGAFSPPQMPNPSALPAANP--NAAPSTTPGFHPAPGV 221 SQGN+ + R D A +P P P PA NP N AP+ PG P P Sbjct: 299 SQGNTTVDVQVIPRP---DLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEP 355 Query: 222 MPPRGIDLAPAALTPLKIQP 241 P DL P A QP Sbjct: 356 DP----DLNPDANPDTDGQP 371
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.9 bits (77), Expect = 0.004 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 149 QVLDGLAHAHANGVVHRDLKPQNVMVTTRDGEPCAKILDFGI 190 ++LD H GVVH D+KP NV+ GEP ++D G+ Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPV--VIDLGL 292
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 30.4 bits (68), Expect = 0.004 Identities = 10/30 (33%), Positives = 13/30 (43%) Query: 144 NREPNAPGEPDELGELGELGEPDLPDEPDD 173 P+ P PD E PD P+ PD+ Sbjct: 292 PDNPDNPNNPDNPNNPDEPNNPDNPNNPDN 321
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 9e-11 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 493 RALVVDDNENARETLGAMLATLGIRVDLRGTGKEGLRCFGECQHDIVVLDLELPDISGFE 552 LV DD+ R L L+ G V + R D+VV D+ +PD + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 553 VAEQIRWATSSDAARKTTILGVSAYES------ALLKGDHAIFDAFIPKPIHLDTLGGIV 606 + +I+ A +L +SA + A KG +D ++PKP L L GI+ Sbjct: 65 LLPRIK-----KARPDLPVLVMSAQNTFMTAIKASEKG---AYD-YLPKPFDLTELIGII 115 Query: 607 SR 608 R Sbjct: 116 GR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 5e-05 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 188 ARIAVVDDSPDVAETICEYFAEKGVAAIAYYDSVSFRKALEVEDFDGYILDWLLGEETAA 247 A I V DD + + + + G ++ + + + D D + D ++ +E A Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 248 PLVRGIRASENADAPIFLLTGKISTGEASEDEIADIVSSFNARCEE---KPVRLPILFAE 304 L+ I+ D P+ +++ ++ + + + KP L L Sbjct: 64 DLLPRIK-KARPDLPVLVMSA--------QNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 305 VARAL 309 + RAL Sbjct: 115 IGRAL 119
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 8e-04 Identities = 47/264 (17%), Positives = 93/264 (35%), Gaps = 28/264 (10%) Query: 77 AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALG 136 A V G L D GR+ L+++ + ++ P V++I R++ G+ G Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-------FLWVLYIG-RIVAGIT-G 110 Query: 137 GEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRV 196 A Y+A+ R + ++ G+ + G +G G + Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGM------VAG--PVLGGLM-GGFSPHA 161 Query: 197 PFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLT 256 PF A+ L ++ L + + + PL + + L Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF-----RWARGMTVVAALM 216 Query: 257 AGQAVVWYTGQFYA---LFFLTQTLKVDGASANILIALALLIGTPF-FVFFGSLSDRIGR 312 A ++ GQ A + F D + I +A ++ + + G ++ R+G Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 313 KPIILAGCLIAALTYFPLFKALTH 336 + ++ G +IA T + L T Sbjct: 277 RRALMLG-MIADGTGYILLAFATR 299 Score = 34.8 bits (80), Expect = 8e-04 Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 287 ILIALALLIGTPFFVFFGSLSDRIGRKPIILAGCLIAALTYF 328 IL+AL L+ G+LSDR GR+P++L AA+ Y Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88
>PF06580#Sensor histidine kinase Length = 349 Score = 47.6 bits (113), Expect = 7e-08 Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 55/230 (23%) Query: 305 LAGLRTQAEF-ALRHEVNADVAH----SLEQIA----TSSEQAARLVTQLLALARAENRA 355 +A + +A+ AL+ ++N H +L I +A ++T L L R Sbjct: 154 MASMAQEAQLMALKAQINP---HFMFNALNNIRALILEDPTKAREMLTSLSELMRY---- 206 Query: 356 TGLTFEPVEIASLARQ--AVRDWV---QAALAKQMDLGYEGPDTDAPLRVDGQPVMLREM 410 L + SLA + V ++ ++ + ++V P ML Sbjct: 207 -SLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV---PPML--- 259 Query: 411 LGNLIDNAIRY----TPAGGRITVRVRAERAAGAVHLEVEDTGPGIPPNERERVVERFYR 466 + L++N I++ P GG+I ++ + G V LEVE+TG N +E Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDN--GTVTLEVENTGSLALKNTKE-------- 309 Query: 467 ILGREGDGSGLGLAIVRE-IVAQHGGTLTIDDNVYQTSPRLAGTLVRVSI 515 +G GL VRE + +G I S + V I Sbjct: 310 -------STGTGLQNVRERLQMLYGTEAQIK-----LSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 3e-26 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPKMSGLE 61 IL+A+DD+ + L ++L ++GY V N ++ DL++ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNE-LEARVRALTRR 118 +L R++ +LPVL+++A ++ +K + GA DY+ KPF L E + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 41.1 bits (96), Expect = 4e-07 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 23/124 (18%) Query: 1 MRARGFTLIELMIVLAIVGVVAAYAIPAYQDYLARSRVGEGLALAAS--ARLAVAENAAS 58 MR RGFTL+E+M++L ++GV A + A+ SR A A+L + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPA----SRDDSAAQTLARFEAQLRFVQQRGL 56 Query: 59 GNGFSGGYVSPPATRNVDSIRVDDDSGQIVV-----AFTTRVAAAGANTLVLVPSAPDQA 113 G G + V D Q +V A G + +P + Sbjct: 57 QTGQFFG------------VSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRV 104 Query: 114 DTPT 117 T Sbjct: 105 ATSG 108
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.048 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Query: 205 AALSALLSVGLALTVSRGPWLQVG-----------VMVVAGFWMAFA-QARRDPA--ASR 250 + + +L+ + R WL++ +V+ W R A ++ Sbjct: 49 SLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTK 108 Query: 251 ARAWAIPVVLGVLFVAVNVAVRWANVHYHLGLAESAADRMRDAGQIA 297 A+ +P+ L ++F V V W+ +++ ++ D ++A Sbjct: 109 PVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMA 155
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.2 bits (91), Expect = 1e-06 Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 2/97 (2%) Query: 18 AGCAAFAPRDAAKLECTMPVAAYPENAKPLERRATVLVRAMITASGNAENVTVTTSSRNA 77 + L P YP A+ L V V+ +T G +NV + ++ Sbjct: 147 SKPVTSVASGPRALSRNQPQ--YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN 204 Query: 78 AADRAAVDAMSRIACSQTPARGGEPYPFTLTRPFVFE 114 +R +AM R G E Sbjct: 205 MFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTE 241
>PF06776#Invasion associated locus B Length = 214 Score = 29.5 bits (66), Expect = 0.020 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 2/49 (4%) Query: 1 MKTGRRHFVRSVASASAALAAAAWSPARAAIDAPASPATALSLTPGRWS 49 + + RR R+ A A A A A A+ G W Sbjct: 38 LASCRRLARRNGARLMLAGAMAI--ALSFGWSDRADAQGAVRSVHGDWQ 84 Score = 28.7 bits (64), Expect = 0.039 Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 10 RSVASASAALAAAAWSPARAAIDAPASPATALSLTPG 46 +++ A L+ S R A A A ++ Sbjct: 25 KAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIA 61
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.018 Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 57 REDALFRFASVSKPIVSAAAMRAVAAGKLDLDASI 91 R D F S K ++ A + V AG L+ I Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKI 91
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.2 bits (81), Expect = 4e-04 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 5/155 (3%) Query: 26 LLALATAGFITIVTEALPAGLLPLMGRDLRVSDALVGQLVTVYAAGSIVAAIPLVAATRG 85 L+ L F +++ E + LP + D A + T + + + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 86 MRRRPLLLAALAGFVVANTATAASPYYAPVLV-ARCVAGVSAGLLWALLAGYASRMVDAR 144 + + LLL + + + +L+ AR + G A AL+ +R + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 145 QRGRAIAIAMLGAPVAMSVGI-PL-GTALGAALGW 177 RG+A ++G+ VAM G+ P G + + W Sbjct: 136 NRGKAFG--LIGSIVAMGEGVGPAIGGMIAHYIHW 168
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 138 bits (349), Expect = 3e-38 Identities = 92/408 (22%), Positives = 171/408 (41%), Gaps = 15/408 (3%) Query: 17 VMLWLVATGFFMQTLDATIVNTALPSMAASLGESPLRMQSVVIAYSLTMAVMIPVSGWLA 76 +++WL FF L+ ++N +LP +A + P V A+ LT ++ V G L+ Sbjct: 15 ILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 77 DTLGTRRVFFSAILIFTLGSLLCANAHT-LPLLVAFRVIQGVGGAMLLPVGRLAVLRTFP 135 D LG +R+ I+I GS++ H+ LL+ R IQG G A + + V R P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 136 AERYLPALSFVAIPGLIGPLIGPTLGGWLVKIASWHWIFLINVPVGIAGCIATFYSMPDS 195 E A + +G +GP +GG + HW +L+ +P+ + + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAH--YIHWSYLLLIPMITIITVPFLMKLLKK 191 Query: 196 RNPAAGRFDLKGYLLLTIGMIAISLSLDGLADLGMQHAMVLVLLILSLACFVAYGLYAVR 255 G FD+KG +L+++G++ L L++ +LS FV + + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTT------SYSISFLIVSVLSFLIFVKHIR---K 242 Query: 256 APQPIFSLELFGIHTFSVGLLGNLFARIGSGAMPYLIPLLLQVSLGYGAFEAG-LMMLPV 314 P L F +G+L ++P +++ E G +++ P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 315 AAAGMFSKRIITVLITRHGYRKVLLANTIMVGLMMASFALVSDAMPTWLKIAQLALFGGF 374 + + I +L+ R G VL + + + + + + ++ I + + GG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 375 NSMQFTAMNTLTLKDLGTGGASSGNSLFSLVQMLSMSLGVTVAGALLA 422 + + T ++T+ L A +G SL + LS G+ + G LL+ Sbjct: 363 SFTK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.029 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 154 PAAAPDVSDVSDLPDAPPDAGRAAPPADAAPARHRAPPDPPDPPAPAAELDARRRDAQLD 213 P A + P PP +A + P P P P +++ +RD + Sbjct: 62 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121 Query: 214 EAAMLLRVAAAALAARAPSAEPVH 237 E+ A+ AP+ Sbjct: 122 ESR-----PASPFENTAPARPTSS 140
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.026 Identities = 12/52 (23%), Positives = 26/52 (50%) Query: 11 AAAIAVVTVTAMAAAPVAAAAAATVTAAAMVAATATAVAVATAVVAATAPAM 62 A+ + TV A ++ ++AAA ++ A + A + + ++ A+ AM Sbjct: 366 ASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISGILEASKQAM 417
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 629 bits (1623), Expect = 0.0 Identities = 172/683 (25%), Positives = 295/683 (43%), Gaps = 75/683 (10%) Query: 107 RYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAAT 166 + NIG+ AH+DAGKTT TE +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 167 TAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWR 226 + W+ ++NIIDTPGH+DF EV RS+ VLDGA ++ + GVQ Q+ ++ Sbjct: 62 SFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH 114 Query: 227 QANKYKVPRIAFVNKMDRVGADFFRVQRQIGERLKGVAVPIQIPVGAEEHFQGVVDLVKM 286 K +P I F+NK+D+ G D V + I E+L V Q V M Sbjct: 115 ALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ----------KVELYPNM 164 Query: 287 KAIVWDDESQGVKFTYEDIPANLVELAHEWREKMVEAAAEASEELLEKYLTDHNSLTEDE 346 + + Q + E +++LLEKY+ SL E Sbjct: 165 CVTNFTESEQ------------------------WDTVIEGNDDLLEKYM-SGKSLEALE 199 Query: 347 IKAALRKRTIANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAILGHDLDDKEAER 406 ++ R + P+ GSA N G+ +++ + + S Sbjct: 200 LEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH---------------- 243 Query: 407 HPSDDEPFSALAFKIMTDPFVGQLIFFRVYSGVVESGDTLLNATKDKKERLGRILQMHAN 466 FKI +L + R+YSGV+ D++ + K+K ++ + Sbjct: 244 --RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSING 300 Query: 467 ERKEIKEVRAGDIAAAVG--LK-EATTGDTLCDPGKPIILEKMEFPEPVISQAVEPKTKA 523 E +I + +G+I LK + GDT P + E++E P P++ VEP Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPLPLLQTTVEPSKPQ 356 Query: 524 DQEKMGLALNRLAQEDPSFRVQTDEESGQTIISGMGELHLEIIVDRMKREFGVEATVGKP 583 +E + AL ++ DP R D + + I+S +G++ +E+ ++ ++ VE + +P Sbjct: 357 QREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEP 416 Query: 584 QVAYRETVRTVAEDVEGKFVKQSGGRGQYGHAVIKLEPNP-GKGYEFLDEIKGGVIPREF 642 V Y E + E + + + + P P G G ++ + G + + F Sbjct: 417 TVIYME---RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSF 473 Query: 643 IPAVNKGIEETLKSGVLAGYPVVDVKVHLTFGSYHDVDSNENAFRMAGSMAFKEAMRRAK 702 AV +GI + G L G+ V D K+ +G Y+ S FRM + ++ +++A Sbjct: 474 QNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAG 532 Query: 703 PVLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKLVRAEVPLAEMFGYS 762 LLEP ++ ++ P++++ D + + ++ E+P + Y Sbjct: 533 TELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ--LKNNEVILSGEIPARCIQEYR 590 Query: 763 TSLRSATQGRATYTMEFKHYAET 785 + L T GR+ E K Y T Sbjct: 591 SDLTFFTNGRSVCLTELKGYHVT 613
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 27.4 bits (60), Expect = 0.015 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Query: 23 QTERLALEEQVAQLRNEAQTLHAELEQLRDERNALAAERDTLSAKIDDAQVKLNAILEKL 82 Q + +E Q+ E QT E ++ D A + DT + D A KL KL Sbjct: 112 QAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 171 Query: 83 ----PRTKNVPDAENQLDLLAPQANDEGE 107 P AE ++ +A + E Sbjct: 172 QSLDPADPGYAQAEAAVEQAGKEATEAKE 200
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 29.8 bits (66), Expect = 0.015 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 8/109 (7%) Query: 8 AALAALSGLPCIALAQGDASASSASFASSVS--YAPAAA--SPADADSALSTAPAAAAAS 63 A AA GL A+ A AS AS A++ + YAP+A + +SA + AP A Sbjct: 5 ARWAATLGLTATAVCGPLAGASLASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTL 64 Query: 64 PASGAARGAEAVSADAASAV--ASGASSASPARAASAAQL--APVVVTA 108 + A G +A A + + A G SA A + APVVVT Sbjct: 65 TCAPTASGTHPAAAAACAELRAAHGDPSALAAEDSVMCTREYAPVVVTV 113
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 39.9 bits (93), Expect = 7e-06 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 9/179 (5%) Query: 49 ARRVVSLAPHVTELIYAAG----GGAKLVGAVSYSDYPPAAKAIARVGSNKALDLERIAA 104 R+V+L EL+ A G G A + + PP ++ VG +LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTE 94 Query: 105 LKPDLIVVWRHGNAEHETERLRALGIPLYFSEPRH-LDDVAASLDKLGLLLGTHEIASAA 163 +KP +V E A G FS+ + L SL ++ LL A Sbjct: 95 MKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETH 154 Query: 164 ADAYRRRIAQLRARYADK--PPVTVFFQAWDKPLITLNGDH-IVSDVIALCGGRNVFAR 219 Y I ++ R+ + P+ + D + + G + + +++ G N + Sbjct: 155 LAQYEDFIRSMKPRFVKRGARPL-LLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQG 212
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.003 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 49 GTVNVWGGDGWRDRDHWRGGDDRWHGGWRGGGNWRGGNDWHGGRGNGWQGGRGPAGGRN 107 G + G G D W ++ W GG G +W GG HG G G G G N Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW-GGGSGHGNGGGNGNSGGGSGTGGN 80
>PF05860#haemagglutination activity domain. Length = 117 Score = 67.5 bits (165), Expect = 4e-15 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 23/138 (16%) Query: 82 AQVVG-AGANAPSVIQTQNGLQQVNITKPSGAGVSLNTYSQFDVPKQGVIVNNSPTLTNT 140 AQ+ S I T+ + + +G+ + + + +F VP G N+PT Sbjct: 1 AQITPDTTLPINSNITTEGNTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFNNPT---- 55 Query: 141 QQAGYINGNPNLGPNGSAKIIINQVNSNNPSQLKGFVEIAGQRAEMIISNPSGLVVDGGG 200 + + II++V + S + G + A + + NP+G++ Sbjct: 56 ----------------NIQNIISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIFGQNA 98 Query: 201 FINTSRAILTTGTPSLNA 218 ++ + + + L Sbjct: 99 RLDIGGSFVGSTANRLKF 116
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.017 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 26 PSPADQAAAARANAEQDRQAQQQRDAQQRDAAVRAPSVRSEVPKVEAYPALPAEAPCFRI 85 P+PA + AE +Q + + ++DA + ++ EA + A + Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDAT--ETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 86 DRFTLDVPNSLPDTTK 101 + + + TK Sbjct: 1086 AQSGSETKETQTTETK 1101
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.3 bits (104), Expect = 6e-06 Identities = 51/355 (14%), Positives = 97/355 (27%), Gaps = 34/355 (9%) Query: 379 RAQARPAAPDPRFAPRRPATQAAVSAARNRPMTFTPSRQTTGSTPPQPAPRAQTAAPTAE 438 + R D QA V + + PP PA ++T AE Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARV-DEAPVPPPAPATPSETTETVAE 1042 Query: 439 TARKRAPANPARAPLYAWHEKPAEHIAPAASVHETLRSIEASAAQWTALAGATSTAATPV 498 +++ + + E A V + +S + Q +A + S Sbjct: 1043 NSKQESKTVEKN------EQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 499 TARESMAAPAAPSGGAAASAARDGRAPTSAETAAPDGHAPTS----AKTVAPDGHVPTSA 554 T A A + P +P + A+ + Sbjct: 1097 TTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 555 ETAAPDGHVPTS---AETVAPDGHAPTSAETAAPDGHAP------TSAETAAPNDHASTS 605 E + + A+ + + P + T G++ T+ T P ++ +S Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 606 -------AETAAPDGHVPTSAETAAPDGHVSA---TVETSAVAAPAGITQAAPPIAADTC 655 + H A T++ D A T+ A + A +A + Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVG 1276 Query: 656 PAGEHVIAAVEPAGTSDSAA----IGAGAIAHAEAGAAASTAETASPIGVDTHIA 706 A I+ +E + S+ T + +G D I+ Sbjct: 1277 KAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQTQLGWDQTIS 1331 Score = 40.8 bits (95), Expect = 7e-05 Identities = 52/315 (16%), Positives = 93/315 (29%), Gaps = 51/315 (16%) Query: 690 ASTAETASPIGVDTHIAPSREADRTA-QTAPTAPSPAEATPHVDAPHALDVAARALVGNT 748 + T + I D PS + AP P PA ATP + Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPP-PAPATP----------SETTET-VA 1041 Query: 749 AATAHGAAAVDGSAQRADTASPAASTSGPPAPVAASAASSDRAAPQPVATAAPASIATSG 808 + + V+ + Q A + VA A S+ +A Q + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNRE------VAKEAKSNVKANTQ-------TNEVAQS 1088 Query: 809 ALGTMKASGTAGPQPSTIAAQRASAIDDTGQPPSTGHSTHAAVSNELGRRPHAAPDAVTP 868 T + T + +T+ + + ++ ++ + E + V P Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE-------QSETVQP 1141 Query: 869 VLPPAAAAVPTNASAVQRQALASESAEAAQGVARAAAAGDSRETTQVSPAGARPDGAAPS 928 PA PT + + Q+ + +A+ Q ++ + T S Sbjct: 1142 QAEPARENDPT-VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES------TTVNTGNS 1194 Query: 929 AAVGNPIAPLPDASAITAHEDAPT--------SAAPDAATPVIAAMDSAMPNAVAPASAI 980 NP P + T + ++ S A S + VA Sbjct: 1195 VVE-NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLT 1253 Query: 981 A--SNAGMSPASASA 993 + +NA +S A A A Sbjct: 1254 STNTNAVLSDARAKA 1268 Score = 31.6 bits (71), Expect = 0.039 Identities = 40/283 (14%), Positives = 70/283 (24%), Gaps = 41/283 (14%) Query: 300 PPPASAMPAPTIAAAKPAAATMPPSGLSKAERLAAPTGGAAAPLAAPAAAVTSPAAFAPA 359 PPPA A P+ T + + + T A A A Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR--EVAKEAKSNVKAN--TQ 1081 Query: 360 ATGIAKPIGSTAAVAALGKR-----AQARPAAPDPRFAPRRPATQAAVSAARNRPMTFTP 414 +A+ T + + A + P + VS + + T P Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 415 SRQTTGSTPPQPAPRAQTAAPTAETARKRAPANPARAPLYAWHEKPAEHIAPAASVHETL 474 + + P P ++T PA+ ET Sbjct: 1142 QAEPA----RENDPTVNIKEPQSQTNTTADTEQPAK---------------------ETS 1176 Query: 475 RSIEASAAQWTALAGATSTAATPVTARESMAAPAAPSGGAAASAARDGRA-------PTS 527 ++E + T + S P + P S + R R+ Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Query: 528 AETAAPDGHAPTSAKTVAPDGHVPTSAETAAPDGHVPTSAETV 570 A T++ D + + + S A + V Sbjct: 1237 ATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 1e-22 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 7 TVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLD 66 T+++ +D+ IR + AL G V A DL + D+ +PD + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 VIRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHL--RRR 123 ++ ++ ++PV+V+SA+ + A + GA DYL KPF ++EL+ I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 NQAGAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPL 160 + + V A++ ++R + T L Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 5e-04 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Query: 130 ALVIGAYADRAGRKPAMTLTLAMMAVGTGAIAVLPGYETIGVAAPILLVVTRLIQGLAWG 189 A V+GA +DR GR+P + ++LA AV +A P +L + R++ G+ G Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIVAGIT-G 110 Query: 190 GEAGPATTYILEAAPPERRAAYACWQVATQGFAAVAAGLAG 230 A YI + + RA + + A GF VA + G Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG 151
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 82.7 bits (204), Expect = 8e-24 Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Query: 8 IIVVQLLSALGVIGLVLLQHGKGADMGAAFGSGASGSLFGATGSANFLSRTTAVLATIFF 67 ++VV L+ A+G++GL++LQ GKGADMGA+FG+GAS +LFG++GS NF++R TA+LAT+FF Sbjct: 5 LLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFF 64 Query: 68 VATLALTYLGSYKSAPSVGVLGAAPAPAASAPAASQTPAASA 109 + +L L + S K+ APA + PA Sbjct: 65 IISLVLGNINSNKTNKGSEWEN-LSAPAKTEQTQPAAPAKPT 105
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 29.9 bits (67), Expect = 0.013 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 10/96 (10%) Query: 138 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 190 Y GW+ F+ A Y+++ + G + Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85 Query: 191 GSQQHGFFAGHGVNFLSWNWLPLLPVFVIYFISGIA 226 GS ++G + GV + P+ IY G Sbjct: 86 GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121
>PF01540#Adhesin lipoprotein Length = 475 Score = 28.9 bits (64), Expect = 0.015 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 13 RTGRALADLLLKQQDFEVTALVRRPDFA--LPGAKVVVADLTGDFSSAFN-GITHAIYAA 69 + G+ AD LKQ + L + PD++ L +A+ T F A + G AI + Sbjct: 35 KNGKEKADAALKQANALAEELKKNPDYSKILETLNKEIAEATKSFKEAGSYGDYPAIISK 94 Query: 70 GSAESEGATEEEQIDRDAVARAAD 93 SA E A E+Q A + AD Sbjct: 95 LSAAVENAKSEQQKVDQANKKIAD 118
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 745 bits (1925), Expect = 0.0 Identities = 279/1104 (25%), Positives = 502/1104 (45%), Gaps = 100/1104 (9%) Query: 3 LARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLPGASPETVATS 62 +A FI RP+ +LA+ + +AG A ++LPV+ P + P + V A+ PGA +TV + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTSPLERHLGSIADVAEMTSMS-SVGNARIVLQFNLNRDIDGAARDVQAAINAARADLPA 121 VT +E+++ I ++ M+S S S G+ I L F D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 SLKSNPTYRKVNPADSPIMVVSLTS--KTASPAKLYDAASTVLQQSLSQIDGIGQVSLSG 179 ++ + S +MV S + + D ++ ++ +LS+++G+G V L G Sbjct: 121 EVQ-QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SANPAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGP------HRYQLYTND 233 + A+R+ L+ L Y + DV L N G + P + Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QATKAAQYKDLVI-AYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLVILYRSPGAN 292 + ++ + + + + V L DV+ V E+ + +NG+ A + + + GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVSLVVMVVFLF 352 +DT + +KA L +L P ++V D + ++ S+ + TL A+ LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDAIVVLENIAR 412 L+N RATLIP++AVP+ ++GTF + G+S+N L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFREFALTLSLAI 471 + E+ P +A ++ ++ I++ L AVF+P+ GG G ++R+F++T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 AVSLVVSLTLTPMMCARLLPEAHAPRDE--GRVARWLERGFEWMQRGYERTLSWALRHPF 529 A+S++V+L LTP +CA LL A E G W F+ Y ++ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 TILMTLVATIALNIALYIVVPKGFFPQQDTGLMIGGIQADQTTSFQAMKLRFTEMMRIIR 589 L+ +A + L++ +P F P++D G+ + IQ + + + ++ Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 ANP-----NVANVAGFT-GGAQTNSGFMFVALKDKPQR---KLSADQVIQQLRPQLAEVA 640 N +V V GF+ G N+G FV+LK +R + SA+ VI + + +L ++ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 641 GARTFLQAAQDIRAGGRQSNAQYQFT-LLGDSTAELYKWGP-ILTEALQKRPELADVNSD 698 I G + ++ G L + +L A Q L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 QQQGGLEAMVTIDRATAARLGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPQY 758 + + + +D+ A LG+ + I+ T+ A G V+ + + ++ ++ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 WQSPEMLKQIYISTSGGSASGVQTTNAAAGTYVATTARASTAGAAAQSAAAIAADSARNQ 818 PE + ++Y+ ++ G V + +V + R R Sbjct: 779 RMLPEDVDKLYVRSANGEM--VPFSAFTTSHWVYGSPRLE-----------------RYN 819 Query: 819 ALNSIASSG--KSSASSGAAVSTSKSTMVPLSAIASFGPSTTPLAVNHQGLFVATTISFN 876 L S+ G SSG A++ ++ Sbjct: 820 GLPSMEIQGEAAPGTSSGDAMALMENLAS------------------------------K 849 Query: 877 LPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAALAAVYIVL 936 LP G+ G + P L+ + V++ L Sbjct: 850 LPAGIGY------------------DWTGMSYQERLSG----NQAPALVAISFVVVFLCL 887 Query: 937 GILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKKNAIMMVDF 996 LYES+ PV+++ +P VG LL LF + + ++G++ IG+ KNAI++V+F Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 997 AIDA-SRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAEMRAPLGIAIA 1055 A D ++GK +A A +R RPI+MT++A +LG LPLA G G+ + +GI + Sbjct: 948 AKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVM 1007 Query: 1056 GGLIVSQMLTLYTTPVVYLYMDRL 1079 GG++ + +L ++ PV ++ + R Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 96.1 bits (239), Expect = 4e-22 Identities = 83/503 (16%), Positives = 167/503 (33%), Gaps = 25/503 (4%) Query: 2 NLARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLP-GASPETVA 60 N + L+ I + F++LP S LP+ D L LP GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TSVTSPLERHLGSIAD----VAEMTSMSSVGNAR----IVLQFNLNRDIDGAARDVQAAI 112 + + +L + V + S G A+ + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAARADLPASLKSNPTYRKVNPADSPIMVVSLTSKT-----ASPAKLYDAASTVLQQSLS 167 + A+ +L + + L A + +L + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 168 QIDGIGQVSLSGSAN-PAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGPHR 226 + V +G + ++E++ + G+ L D+ +++A + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 227 YQLYT---NDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLV 283 +LY L + N V S ++ V L NG ++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEI 826 Query: 284 ILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVS 343 +PG + D A + L + LPA I S R S + I+ Sbjct: 827 QGEAAPGTSSGD----AMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPALVAISFV 881 Query: 344 LVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDA 403 +V + + +W + + VP+ IVG A L + ++ L+ G +A Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 404 IVVLENI-ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFRE 462 I+++E + G ++A R +L SL+ + LP+ + G Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 463 FALTLSLAIAVSLVVSLTLTPMM 485 + + + + ++++ P+ Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVF 1024 Score = 59.9 bits (145), Expect = 5e-11 Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 4/225 (1%) Query: 870 ATTISFNLPPGVSLSKATQVIYQTMAEV--GVPPTIQGS-FQGTAQAFQESLKDQPILIL 926 A + L G + + I +AE+ P ++ T Q S+ + + Sbjct: 286 AAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF 345 Query: 927 AALAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIV 986 A+ V++V+ + ++ + +P +G L F + + + G++L IG++ Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLL 405 Query: 987 KKNAIMMVDFAIDASRQGKSSF-DAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045 +AI++V+ + K +A ++ ++ M +P+AF G Sbjct: 406 VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465 Query: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLRVWAEKRRDRR 1090 + I I + +S ++ L TP + + + Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 800 bits (2067), Expect = 0.0 Identities = 283/1035 (27%), Positives = 498/1035 (48%), Gaps = 31/1035 (2%) Query: 4 SRVFILRPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQVQTFYPGASPEVMTSSV 63 + FI RP+ +L +M+AG +A+ LP+A P + P + V YPGA + + +V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLERQFGQMPSLNQMSSQS-SAGASVITLQFSLDLPLDIAEQEVQAAINAAGNLLPSD 122 T +E+ + +L MSS S SAG+ ITL F DIA+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPAPPIYAKVNPADAPVITLAVTSKTLPLTQ--VQDLADTRLAMKISQVSGVGLVSLSGG 180 + I + + ++ S TQ + D + + +S+++GVG V L G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 NRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNFDGP------TRAYTINANDQ 234 A+RI + L Y L D+ + N G G +I A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LTSADQYNDAVV-AYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANV 293 + +++ + +G V L DVA++ G EN + A ++ +PA L ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFL 353 + T +KA L +LQ P + V D T ++ ++ +V L A+ LV LVMYLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 ANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENIARY 413 N+ AT+IP+++VP+ L+GT A++ G+S+N L++ + +A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 -VEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472 +E+ EA K QI ++ + + L AV IP+ F G G ++ +F+IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLIERV----IERYGVALQWVLDRQR 528 +S +V+L L P +CA LL+ E H + G + Y ++ +L Sbjct: 480 LSVLVALILTPALCATLLK-PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 529 ATLVVAVLTLALTALLYVVIPKGFFPTQDTGVIQAITQAPQSVSYGAMAERQQALAAEIL 588 L++ L +A +L++ +P F P +D GV + Q P + + + L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 589 KH--PDVVSLTSFIGVDGANITLNSGRMLINLKPRDERS---ESASDVIRSLQRQVANVT 643 K+ +V S+ + G + N+G ++LKP +ER+ SA VI + ++ + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 644 GISLYMQPVQDLTIDSTVSPTQYQFMLTS---PNPDEFATWVPKLVDRLKKEPS-LADVA 699 + P I + T + F L D +L+ + P+ L V Sbjct: 659 DGFVI--PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 700 TDLQNSGKSVYIEIDRTSAARFGITPATVDNALYDAYGQRIVSTIFTQSNQYRVILESEP 759 + +E+D+ A G++ + ++ + A G V+ + ++ ++++ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 760 QMQHYTDSLNGIYLPSAGGGQVPLSAIATFRERPAPLLVSHLSQFPATTISFNLAAGASL 819 + + + ++ +Y+ SA G VP SA T + + P+ I A G S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 820 GEAVKAIDAAERELGLPASFQTRFQGAALAFQASLSNQLFLILAAIVTMYIVLGVLYESY 879 G+A+ ++ +L PA + G + + S + L+ + V +++ L LYES+ Sbjct: 837 GDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 880 IHPITILSTLPSAGVGALLALMITGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAERV 939 P++++ +P VG LLA + D+ ++G++ IG+ KNAI++++FA + Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 940 EGKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQ 999 EGK EA A +R RPILMT+LA +LG +PL + +GAGS + +GI + GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1000 VLTLFTTPVIYLGFD 1014 +L +F PV ++ Sbjct: 1015 LLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.5 bits (113), Expect = 7e-08 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 16/149 (10%) Query: 84 AVRGEMPVVLNALGTVTPLANV-TVRTQLSGYLQAVSFQEGQIVKKGDVLAQIDPRP--- 139 +V G++ +V A G +T ++ + ++ + +EG+ V+KGDVL ++ Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134 Query: 140 ----YQISLANAQGALARDEALLATARLDLKRYQTLVAQ---DSIAKQTADTQASLVKQY 192 Q SL A+ R + L + L+ L + +++++ SL+K+ Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE- 193 Query: 193 EGTVQIDRAAIDSAKLNLAYARITAPVSG 221 Q + L + A Sbjct: 194 ----QFSTWQNQKYQKELNLDKKRAERLT 218 Score = 38.7 bits (90), Expect = 4e-05 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 26/182 (14%) Query: 141 QISLANAQGALARDEALLAT--ARLDLKRYQTLVAQDSIAKQTADTQASLVKQY-EGTVQ 197 + ++ + L ++L+ + L A++ T + ++ + + T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 198 ID--RAAIDSAKLNLAYARITAPVSGRV-GLRQVDPGNYVTPSDT--------NGIVVIT 246 I + + + I APVS +V L+ G VT ++T + + V Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 247 QLQPMSVIFTTSEDNLPAILKQVGAGGKLSVTAYNRNNTTPLETGV-LDTLDNQIDTATG 305 +Q + F AI+K V A+ L V LD D G Sbjct: 371 LVQNKDIGFINVG--QNAIIK---------VEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 306 TV 307 V Sbjct: 420 LV 421
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.3 bits (71), Expect = 0.003 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 24/123 (19%) Query: 33 LKIALFGATGMIGSRIAAEAARRGHQVTAL-------------SRNPAASGANVQAKAAD 79 +K + GA G IG ++ GHQV + +R + Q D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 80 LFD---PASIAAALEGQDVVASA------YGPKQEEASKVVAVAKAL--VDGARKAGVKR 128 L D + A+ + V S Y + A + L ++G R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 129 VVV 131 ++ Sbjct: 121 LLY 123
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.014 Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 62 AAANATANATANATTDPTIDATADATTDAMANVTTDAATRVTANPPIHETANVPASTAAA 121 A+ + T +A P A T N T+ P ETAN P TAAA Sbjct: 463 ASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQL-PSTGETAN-PFFTAAA 520 Query: 122 ATTEAVAGARA 132 T A AG A Sbjct: 521 LTVMATAGVAA 531
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 45.3 bits (107), Expect = 3e-07 Identities = 56/337 (16%), Positives = 114/337 (33%), Gaps = 52/337 (15%) Query: 49 PGSASWIGVVPTATQLGYATGMLVLAPLGDRFDRRTLILLQIAGLSAALVVAAAAPT--- 105 P S +W V TA L ++ G V L D+ + L+L I V+ + Sbjct: 48 PASTNW---VNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFS 104 Query: 106 LGVLAAASLAIGILATIAQQAVPFAAEIAPPAARGQAVGTVMSGLLLGILLARTAAGFVA 165 L ++A G A A V A I P RG+A G + S + +G + G +A Sbjct: 105 LLIMARFIQGAGAAAFPALVMVVVARYI-PKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163 Query: 166 EYFGWRAVFAVSVAALAALAAVIVARLPRSSPTSTLPYGK-------------------- 205 Y W + + + + + ++ Sbjct: 164 HYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSI 223 Query: 206 --LLASMWQLVRELRGLREAS------------------MTGGAIFAAFSAFWPVLTLLL 245 L+ S+ + ++ +R+ + + GG IF + F ++ ++ Sbjct: 224 SFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMM 283 Query: 246 AGAPFHLGPQAAG--LFGIVGAAGALAAPYAGRFADKRGPRAIISLAIALIAASFAIFA- 302 L G + + + G D+RGP ++++ + ++ SF + Sbjct: 284 -KDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASF 342 Query: 303 LSGASLIGLVIGVIVLDVGVQAAQIS-NQSRIYALKP 338 L + + I ++ + G+ + + +LK Sbjct: 343 LLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQ 379
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.0 bits (163), Expect = 3e-15 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 19/266 (7%) Query: 1 MADHSIKGKTVIIAGGAKNLGGLIARDLAAQGAQAVAIHYNSAASKGAAAETVAAIEAAG 60 M I+GK I G A+ +G +AR LA+QGA A+ YN + + V++++A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLE----KVVSSLKAEA 56 Query: 61 ARAVALQADLTAAGAVEKLFVDTVAAIGRPDIAINTVGKVLKKPFVEITEAEYDEMAAVN 120 A A AD+ + A++++ +G DI +N G + +++ E++ +VN Sbjct: 57 RHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVN 116 Query: 121 SKTAFFFLKEAGRHVND--NGKIVTLVTSLLGAFTPFYAAYAGMKAPVEHFTRAAAKEFG 178 S F + +++ D +G IVT+ ++ G AAYA KA FT+ E Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 179 ARGISVTAVGPGPMDTPFFYPAEGADAVAYHKTAAALSPFSKTGL--------TDIGDVV 230 I V PG +T + + A +L F KTG+ +DI D V Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETF-KTGIPLKKLAKPSDIADAV 235 Query: 231 PFIRHLVSD-GWWITGQTILINGGYT 255 F LVS IT + ++GG T Sbjct: 236 LF---LVSGQAGHITMHNLCVDGGAT 258
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 48.5 bits (115), Expect = 4e-08 Identities = 34/243 (13%), Positives = 67/243 (27%), Gaps = 1/243 (0%) Query: 200 EPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGASASSAVAAPAAAGSGPAASAPAAPV 259 P+ + + A PPA P+ + A S + A A Sbjct: 1007 VPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR 1066 Query: 260 RHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPASAPTPASAPTPTPASAPTPA 319 A A ++ A A + + T + A A T P Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 320 SIPAPAPASAPASTPAPASAPAPAPTTSPASSIAPTAAPFASAIPPARAEKFAPAVTATT 379 S +P + P A PT + + T + P + Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 380 AGSTSTPASAAAPSSPWLPPLLPPLLSPDAPSPPADTARTAPLAPAASPATAAAAATNAT 439 + + P + P P ++ ++ + P + R + + + A ++ + + Sbjct: 1187 TTVNTGNSVVENPENT-TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 440 ATA 442 A Sbjct: 1246 TVA 1248 Score = 39.7 bits (92), Expect = 3e-05 Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 10/208 (4%) Query: 178 DPTRRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGASAS 237 + T +++ K A K V + E A+ +T T A V A + Sbjct: 1060 ETTAQNREVAKEA-KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 238 SAVAAPAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPA 297 + + P A PA + PT + + A PA Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPAR------ENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 298 PASAPTPASAPTPTPASAPTPASIPAPAPASAPASTPAPASAPAPAPTTSPASSIAPTAA 357 ++ T + + + P + + P S + P S+ Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP- 1231 Query: 358 PFASAIPPARAEKFAPAVTATTAGSTST 385 + P + V ST+T Sbjct: 1232 --HNVEPATTSSNDRSTVALCDLTSTNT 1257
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 30.2 bits (68), Expect = 0.019 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 19/128 (14%) Query: 390 LKAGEEADARTPAA---LRRGRKLVVQIGE----------TFGEKNAPMFVEQLDALRLA 436 L+ E P A L G I + F EKN + ++LD L Sbjct: 127 LEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKE 186 Query: 437 DKLALDLAPVMVYGDDVTHVVTEEGIANLLMCRDADEREHAIRGVAGYTEIGRGRDRRLV 496 K + P + +VT EG + I + E + + LV Sbjct: 187 SKDKFNKIP-----AEKKLIVTSEGAFKYF-SKAYGVPSAYIWEINTEEEGTPEQIKTLV 240 Query: 497 ERLRERGV 504 E+LR+ V Sbjct: 241 EKLRQTKV 248
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.002 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 12/64 (18%) Query: 149 VIAAAAGTVVYAGNGLRGYGNLLIVKHNADFLTTYAHNRALLVKEGQTVAQGQKIAEMGD 208 ++A A G + ++G +K + + + ++VKEG++V +G + ++ Sbjct: 82 IVATANGKLTHSGR-------SKEIKPIENSIV-----KEIIVKEGESVRKGDVLLKLTA 129 Query: 209 TDND 212 + Sbjct: 130 LGAE 133
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 34.0 bits (77), Expect = 0.003 Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 23/237 (9%) Query: 587 GLDSSLQDTLAGLSQRRDI--DVRRYVMGLDQMNTQQEDAYQYQDTTRNMTARAKAEFD- 643 GLDSS ++ D+ D RRYV L ++E Q++D + + A +AE D Sbjct: 41 GLDSSTENGWQEFESYADVGVDPRRYV-PLQVKEKRREIELQFRDAEKKLEASVQAELDK 99 Query: 644 ARYALQQ-------QYQQRVRQLVEQYALDPTSDMKQYAEKLRAEQAYLA-ERSAGMERF 695 A AL R +V + +K+ + A R+A Sbjct: 100 ADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGE 159 Query: 696 FAREEARRNSFEAQMKDGLSSLGG-DAMTNAELAKTAFVT--AWQDSQSALEQFITSGEG 752 A E N EA M+ + G A N +L A + ++ +A + I + Sbjct: 160 QAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNTLTAAKASIEAAAA 219 Query: 753 NFKKFTASI-------LADLAKIALRQAEVFAIQSIGSSFGFFSEGGPVGHFASGGA 802 N + A+ + A+R A +A+ + G S + G + A G A Sbjct: 220 NKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANG-SVVATAAGRGLIQVAQGAA 275
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.4 bits (68), Expect = 0.031 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 213 RTEAPPRTASIVADLDALERFGWHDDAWLRARASLDLAHAPVSIYEVHPESWLRVAAEGN 272 + RT + A L+A RF D +L +A L + A Y + LRV EG Sbjct: 754 AVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRA--ANGLRVRDEGG 811 Query: 273 RSA 275 S Sbjct: 812 SSV 814
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.011 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 376 SYNVYRNGNKVGSS-TSTAYTDAGLIAGTAYSYTVTEIDPSLGESA 420 +Y +YRN ++ S T T Y D L G Y+Y V ++ GESA Sbjct: 1260 TYTIYRNNTQIASGVTETTYRDPDLATGF-YTYGV-KVVYPNGESA 1303
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.6 bits (95), Expect = 1e-05 Identities = 59/353 (16%), Positives = 120/353 (33%), Gaps = 55/353 (15%) Query: 44 VDTQMFSLVIPALLTAWGIGKGQAGLIGGATLAAGAIGGLLAGMIADRFGRVRALQITVC 103 ++ + ++ +P + + + A + +IG + G ++D+ G R L + Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 104 WFSLFTFLSAFAQNFEQLLVL-KTLQGLGFGGEWTAGAVLLSETIRARHRGKAMGIVQSA 162 + + +F LL++ + +QG G V+++ I +RGKA G++ S Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 163 WGFGWGGAVLLYTLVFSWLPPEWAWRVLFAIGVLPALLVLYIRRAIPEPPRDDAR----- 217 G G + ++ ++ W L I ++ + V ++ + + + R Sbjct: 148 VAMGEGVGPAIGGMIAHYI----HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 218 ----------------------VAVSTSAAAAQTAPARASAKSIFDPSV------LRMTI 249 + VS + R DP + + + Sbjct: 204 IILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVL 263 Query: 250 VGGLIGVGAHGGYHAITTWLPTYLKTERHLSVLGTG------AYLAVIIVAFIIGCMTSA 303 GG+I G + +P +K LS G ++VII +I G Sbjct: 264 CGGIIFGTVAG----FVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG----- 314 Query: 304 YLQDRIGRRRNLMLFSACCVVTVNLYVMLPLDNVAMLLLGFPLGFFAAGIPAT 356 L DR G +L ++V+ L + + F G+ T Sbjct: 315 ILVDRRGPL--YVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365
>FLAGELLIN#Flagellin signature. Length = 507 Score = 34.2 bits (78), Expect = 0.001 Identities = 45/282 (15%), Positives = 71/282 (25%), Gaps = 9/282 (3%) Query: 66 WLASANYAGYFVGAMTCARIAVDPARMVRAGLAATVLLTFAMGLASPFWVWALVRFVGGA 125 L+ N VGA I +D ++ L A+ + + + V G Sbjct: 136 VLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGY 195 Query: 126 VSAWTFVFASQWGLRRVVEHGAPAWGGVIYTGPGIGIVATGLIGFALAGRHAALGWIGFA 185 + R V GA T P V F Sbjct: 196 DTYAVGANK----YRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFK 251 Query: 186 VASAVLTAFVWRAFGAAGAGTDGGQSRGGAKRAGDGVGVADAAGRAGERLAAGAAEGAGA 245 + +A A G G + G + G G + G Sbjct: 252 TTKSTAGTAEAKAIAGAIKGGKEGDT---FDYKGVTFTIDTKTGNDGNGKVSTTINGEKV 308 Query: 246 VADAVSAANVADTADTADTADTADTANTANTANTANTANTANTA--NSANSANSANSANS 303 A D A + + + T N + S AN+A S Sbjct: 309 TLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGES 368 Query: 304 ANSANSATATAERNSPVAGVAGQHGAMAAPAARAPHVESAAA 345 + N A TA +AG+ + A+ + + A Sbjct: 369 KITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDA 410
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 47.7 bits (113), Expect = 5e-08 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 26/154 (16%) Query: 119 GSGFIVGADGIILTTAYVVGQASEATVRLIDRR-----------EFKA-RVLAVDDSSDV 166 SG +VG +LT +VV L F A ++ D+ Sbjct: 104 ASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 162 Query: 167 AVLQIDATK--------LPTVRLGDSSRVRTGEPVLTIGTPDGSANTVTTGIVSATARML 218 A+++ + + + +++ + + + G P G T + ++ Sbjct: 163 AIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP-GDKPVATMW--ESKGKIT 219 Query: 219 PDGGRFPFFQTDVTGNLDNSGGPVFNRAGEVIGI 252 G + TG NSG PVFN EVIGI Sbjct: 220 YLKGEAMQYDLSTTGG--NSGSPVFNEKNEVIGI 251
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 27.6 bits (61), Expect = 0.040 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 190 VDIREEALHELIDRLDDLASEFHSAF--LHEAGK 221 + R + L + + L LA F AF H+AG Sbjct: 283 LTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGF 316
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 120 bits (301), Expect = 5e-35 Identities = 77/261 (29%), Positives = 125/261 (47%), Gaps = 16/261 (6%) Query: 7 LEGKVALITGASSGLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAAGGAAHVVSLD 66 +EGK+A ITGA+ G+G+ A+ L+ GA + E+L+++ + ++A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 VTDYQSIRAAVAHAETEAGTIDILVNNSGVSTMQKLVDVSPADFEYVFDTNTRGAFFVAQ 126 V D +I A E E G IDILVN +GV + +S ++E F N+ G F ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 127 EVAKRMMMRAGSGNAKPACRIINIASVAGLRPFSQIGLYAMSKAAVVHMTRAMALEWGRH 186 V+K MM R I+ + S P + + YA SKAA V T+ + LE + Sbjct: 126 SVSKYMMDRRSGS-------IVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 187 GINVNAICPGYIDTEINHYLWETEQGQ---------KLQSMLPRRRVGKPQDLDGLLLLL 237 I N + PG +T++ LW E G ++ +P +++ KP D+ +L L Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 238 AADESQFINGSIVSADDGLGL 258 + ++ I + D G L Sbjct: 239 VSGQAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.5 bits (180), Expect = 8e-18 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 19/249 (7%) Query: 10 VLVIGGSSGIGAAAARAFAVLDADVTIASRDANKLAAAARAIDG-PRPVRQAVLDTTDAP 68 + G + GIG A AR A A + + KL ++ R D D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 69 AVDA----FFAEAGPFDHVVMSAAHTPGGPVRKLPLADAQAAMDSKFWGAY----RVARA 120 A+D E GP D +V A G + L + +A G + V++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 121 ARIAPGGSLTFVSGFLSVRPSASAVLQGAINAALEALARGLALELAP--VRVNTVSPGLV 178 GS+ V + P S + AA + L LELA +R N VSPG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 179 ATPLWSKL--DDAAREAMYASAAAR----LPARRVGQPEDVANAIVYLAATR--YATGST 230 T + L D+ E + + +P +++ +P D+A+A+++L + + + T Sbjct: 191 ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHN 250 Query: 231 ALVDGGGAI 239 VDGG + Sbjct: 251 LCVDGGATL 259
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.8 bits (61), Expect = 0.026 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 22 AAALAPAHADTTGLIEPAHLSVDGSLPAAQRDAQILAARRYDTFWHNGDPALARAALADD 81 AA+LA A +D ++ S + A A + + R W + P R AL D Sbjct: 274 AASLAQAISDAIAVLGRVLASAPSVM--AVGFASLTYSSRTAEQWQDQTPDSVRYALGMD 331 Query: 82 FADRTPPP 89 A PP Sbjct: 332 AAKLGLPP 339
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 119 bits (301), Expect = 1e-38 Identities = 35/89 (39%), Positives = 53/89 (59%) Query: 37 TKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGR 96 K +L + ++ L K+++ V+A F + L GE V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 97 NPKTGEAIPIAARRVVTFHASQKLKALVE 125 NP+TGE I I A +V F A + LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.6 bits (69), Expect = 0.025 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 36/179 (20%) Query: 491 APWDAMSDLFNRHLLDYSPRSLNDLKLSADGGALRVRGGIKLWNQVPPGVWLPADMKGSL 550 AP + FN L P+++ DL +G ++PPG + D+ + Sbjct: 40 APLSSAELYFNPRFLADDPQAVADLSRFENG------------QELPPGTY-RVDIYLNN 86 Query: 551 TLLDERHLAFTPTQVSVLGIP--QAKLLRALGIELSSLAPLKRRGAELRGDSLVLDQYTV 608 + R + F +P L ++G+ +S++ + + L Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLA---DDACVPLTSM-- 141 Query: 609 FPPPVLIGHMSQATVEPDG----LRLTFRPAPNAPVLRPPANLPGSYLWLEGGDTKMFN 663 + AT + D L LT P A + LW G + + N Sbjct: 142 ---------IHDATAQLDVGQQRLNLTI---PQAFMSNRARGYIPPELWDPGINAGLLN 188
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.004 Identities = 18/54 (33%), Positives = 23/54 (42%) Query: 20 GGGGGGGGGGGGGGSTTSNPNGTGVTPSSAANVQPVTVSAGITGAANMLMTSVT 73 GGG G G GGG + +GTG S+ A A T A L S++ Sbjct: 55 HWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSIS 108 Score = 30.8 bits (69), Expect = 0.011 Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 20 GGGGGGGGGGGGGGSTTSNPNGTG 43 G G GGG G G S+ +NP G G Sbjct: 26 GLGVGGGASDGSGWSSENNPWGGG 49
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 171 bits (435), Expect = 5e-48 Identities = 102/435 (23%), Positives = 172/435 (39%), Gaps = 62/435 (14%) Query: 5 LRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAE--RVMDSNDIEKERGITILAKNCA 62 + NI ++AHVD GKTTL + LL SG E V + D+ +E++RGITI + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLK 122 ++E T +NI+DTPGH DF EV R LS++D +LL+ A +G QTR + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PIVVINKIDRPGARIDWV-------------INQTFDLFDKLGATE----EQLDFPIV-- 163 I INKID+ G + V I Q +L+ + T EQ D I Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 164 -----------------YASGLNGY---ASLDP-----AARDGDMRPLFEAILQHVPVRP 198 + SL P A + + L E I Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 ADPDAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVVMRFGPEGDVLNRKINQVLSF 258 + L ++ ++YS R+ R+ G + V R + + KI ++ + Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV--RISEKEKI---KITEMYTS 297 Query: 259 QGLERVQVDSAEAGDIVLINGIEDVGIGATICAVEAPEALPMITVDEPTLTMNFLVNSSP 318 E ++D A +G+IV++ E + + + + + I P L + Sbjct: 298 INGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 319 LAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRRE- 377 + D L++ V E + +S G++ + + ++ + Sbjct: 357 QREMLLDALLEISDSDPLLR-------YYVDSATHEII--LSFLGKVQMEVTCALLQEKY 407 Query: 378 GYELAVSRPRVVMQE 392 E+ + P V+ E Sbjct: 408 HVEIEIKEPTVIYME 422 Score = 34.1 bits (78), Expect = 0.002 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 1/100 (1%) Query: 387 RVVMQEVDGVKHEPYELLTVDLEDEHQGGVMEELGRRKGEMLDMVSDGRGRTRLEYRIPA 446 V+++ EPY + E+ + + ++D L IPA Sbjct: 525 EQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQL-KNNEVILSGEIPA 583 Query: 447 RGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKEGSVGERRN 486 R + ++S+ T G + Y V + R Sbjct: 584 RCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.028 Identities = 8/83 (9%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 48 EVPAPAAGVLAQVLQNDGDTVVADQVIATID---TEAKAGAAAAAAGAADVQPAAAPVAA 104 E+ ++ +++ +G++V V+ + EA ++ A ++ + + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 105 PAPAAQPAAAAASSTAAASPAAS 127 + S Sbjct: 158 RSIELNKLPELKLPDEPYFQNVS 180
>cloacin#Cloacin signature. Length = 551 Score = 44.7 bits (105), Expect = 7e-07 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%) Query: 30 GGSGTISKGLDGSGSGSGGGNAISTTGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGGGS 89 G+ + S ++G +G G G S G S GGSGSG G +G +GGG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG-IHWGGGSGHGNGGGNG 69 Query: 90 TSGGGSTSGGGSTSGGTSTSSSINALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLP 146 SGGGS +GG ++ + AL T + AG+ + + ++ + P Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGP 126 Score = 40.5 bits (94), Expect = 2e-05 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 38 GLDGSGSGSGGGNAI-STTGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGG-GSTSGGGS 95 G DG G +G + + GG G G GSG S + GG SG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 96 TSGGGSTSGGTSTSSSINALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLPGVNPQTTQA 155 +GGG+ + G + + N A G + + GL + + L A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 156 LGG 158 L G Sbjct: 123 LKG 125 Score = 34.7 bits (79), Expect = 0.001 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 4/125 (3%) Query: 55 TGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGGGSTSGGGSTSGGGSTSGGTSTSSSINA 114 +GG G G +GA S +G GL GGG++ G G +S GG+ + Sbjct: 2 SGGDGRGHNTGA---HSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGG 58 Query: 115 LGTIAGNTGGIISGAGSTVSGLGTVVGSQTLPGVNPQTTQALGGVVQSL-GGAVSALGSG 173 G SG GS G + V + G +T GG+ S+ GA+SA + Sbjct: 59 GSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIAD 118 Query: 174 VTSGI 178 + + + Sbjct: 119 IMAAL 123
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 53.3 bits (128), Expect = 4e-11 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 4 LFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALVGGAV 63 + A+ D +P++L L L ++F + F +L A++G Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNL--LGGF-VSLGDAVIGAMA 190 Query: 64 GLVSLFPFFAL-------RVMGAADVKVFAVLGAWCGLPALPRLWVVASIAAGVHALALM 116 G + L+ + MG D K+ A LGAW G ALP + +++S+ + L+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 117 LLTR 120 LL Sbjct: 251 LLRN 254
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 138 bits (349), Expect = 2e-37 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 11/249 (4%) Query: 160 VQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGG----TSSMSVSANI 215 V V+ + E + G+ + +N G T + + +++ G S+ Sbjct: 347 VLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLA 406 Query: 216 PIASAFN-LVVGSATRGLFADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVP 274 S+FN + G L+ L ++ +LA P++V L A+F G E+PV Sbjct: 407 SALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG 466 Query: 275 QSLGT-----ISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPA 329 + +++ K G+ L + P + + L++ E S + S + + Sbjct: 467 SQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAAS-STSSDLGAT 525 Query: 330 LTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKEL 389 TR + V +G GE+ +GGL+D+ + DKVP LGD+P+IG F+ S + + + L Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 390 VIIVTPHLV 398 ++ + P ++ Sbjct: 586 MLFIRPTVI 594
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 4e-05 Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 72 AALRVSHPGLPIVALGSLGEPESALAALRAGVRDFIDFSAPAEDALRITRGLLDHVGDQP 131 ++ + P LP++ + + +A+ A G D++ + + I L +P Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 132 SRH 134 S+ Sbjct: 127 SKL 129
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 122 bits (308), Expect = 3e-36 Identities = 81/252 (32%), Positives = 118/252 (46%), Gaps = 15/252 (5%) Query: 9 GRSFLVTGASSGIGRAAAVALRGCGARVVAAARNARELERLAHETGC-----EPLELDVG 63 G+ +TGA+ GIG A A L GA + A N +LE++ E DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 64 CDASVRAALSG-ERMRDAFDGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVARHV 122 A++ + ER D L+N AGV + +E++ +VN+ G +R V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 123 ARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAALDAMTRVLCVELGPHGIRVNSVN 182 ++ M R GSIV V S A V S AY +SKAA T+ L +EL + IR N V+ Sbjct: 128 SKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 183 PTVTLTPMAERAWSDPHASGPMLA--------AIPLGRFARVADVVAPILFLSSDAAAMV 234 P T T M W+D + + ++ IPL + A+ +D+ +LFL S A + Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 SGVALPVDGGYT 246 + L VDGG T Sbjct: 247 TMHNLCVDGGAT 258
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.041 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 36 VTALCGPNGCGKSTLLRTLAGLQ 58 L G G GKSTL+ TL GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 57.4 bits (138), Expect = 6e-12 Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 24/186 (12%) Query: 74 RALVSQWSKYYFNLAASAGFAAALLLGRPLDMAPQRMRVALRGGMPVALLFEADALRPAQ 133 + L+S W+++Y L A L + LD++P+ VA F D Sbjct: 89 KPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETGRVA-CFWVDVCEDKN 147 Query: 134 AEPAS---RYAALVDH-LRATIDTLAALAKLSPRVLWANAGNLLD-YLFEQCAHAPRAGA 188 A P S R L+ L + L A +++ +++W+N G L++ YL E G Sbjct: 148 ATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEM---KQLLGE 204 Query: 189 DA------AWLFGPVDSRGEANPLRLPVRRVKPCSARLPDPFRARRVCCLRNEIPGEDQL 242 A F + GE NPL V L D RR CC R +P Q Sbjct: 205 ATVESLRHALFFEKTLTNGEDNPLWRTV--------VLRDGLLVRRTCCQRYRLPDVQQ- 255 Query: 243 CGSCPL 248 CG C L Sbjct: 256 CGDCTL 261
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 114 bits (287), Expect = 3e-31 Identities = 78/264 (29%), Positives = 113/264 (42%), Gaps = 15/264 (5%) Query: 115 PARIVVLEFMFAEDLAALDITPVGMADPAYYPIWIGYDDARFARVSDVGTRQEPSLEAIA 174 P RIV LE++ E L AL I P G+AD Y +W+ + V DVG R EP+LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVS-EPPLPDSVIDVGLRTEPNLELLT 93 Query: 175 AAKPDLILGVGLRHAPIFDALSRIAPTVLFKYSPNYIEDGRQVTQYDWARAILRTIGCLT 234 KP ++ + P + L+RIAP F +S DG+Q AR L + L Sbjct: 94 EMKPSFMVW-SAGYGPSPEMLARIAPGRGFNFS-----DGKQ--PLAMARKSLTEMADLL 145 Query: 235 GRARDARAVQARVDAGLARDARRIAAAGRAGERVAWLQELGLPDRYWAFTGNSASAGIAR 294 A A+ + + R + G R L L P F NS I Sbjct: 146 NLQSAAETHLAQYEDFIRSMKPRFV---KRGARPLLLTTLIDPRHMLVFGPNSLFQEILD 202 Query: 295 ALGLE-PWPGEPTREGTAYVTSEDLLKQPDLAVLFVSATEPGVPLDAKLDSSIWRFVPAR 353 G+ W GE G+ V+ + L D+ VL +DA + + +W+ +P Sbjct: 203 EYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKD-MDALMATPLWQAMPFV 261 Query: 354 RAGRVALVERNIWGFGGPMSALRL 377 RAGR V +W +G +SA+ Sbjct: 262 RAGRFQRVP-AVWFYGATLSAMHF 284
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 6e-07 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 14/176 (7%) Query: 17 DRALPAAYPFSALIGQ-AALQQALLLVA-VDPGLGGVLVSGPRGTAKSTAARALAELLP- 73 + + L+G+ AA+Q+ ++A + ++++G GT K ARAL + Sbjct: 127 SKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKR 186 Query: 74 -EGRFVTLPLSASDEQVTGSLDLASALADNT--VRFSPGLVARAHLGVLYVDEINLLPDA 130 G FV + ++A + S T S G +A G L++DEI +P Sbjct: 187 RNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMD 246 Query: 131 LVDALLDAAASGVNTVERDGVSHSHAARFALVGTMNP------EEGELRPQLLDRF 180 LL G G + +V N +G R L R Sbjct: 247 AQTRLLRVLQQG--EYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.5 bits (65), Expect = 0.027 Identities = 25/63 (39%), Positives = 28/63 (44%) Query: 147 ADGATPAAIAGALVARGFGPSAMSVFEHLGGPLERRLDARADAWRDARAAALNVVAIECR 206 A GAT A GA VA G G A V GPL + L A + A A + VAI R Sbjct: 74 AIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGAR 133 Query: 207 ACA 209 A Sbjct: 134 AST 136
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.0 bits (67), Expect = 0.008 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 46 RAELVVNTAELDLDEIVALLARAHGKGQDVARVHSG-----DPSLYGAIGEQIRRLAA 98 R EL TAEL + ++ H +H D +LYG E+I + +A Sbjct: 154 REELAELTAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYGYTDEEIFKASA 211
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 93.4 bits (232), Expect = 1e-22 Identities = 74/403 (18%), Positives = 153/403 (37%), Gaps = 16/403 (3%) Query: 18 FMQNLDSTVVATALPSMARELGVNVVFLSSAITSYLVALTVFIPVSGWIAERFGAKRVFI 77 F L+ V+ +LP +A + + T++++ ++ V G ++++ G KR+ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 78 AAIAIFTAASVMCAAANGLAT-LVAARILQGAGGALMVPVGRLILYRGVSRHEMLAATTW 136 I I SV+ + + L+ AR +QGAG A + +++ R + + A Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 137 LTMPALVGPLLGPPLGGFLTDALSWRAVFWINVPVGVAGAALAARLVPASAGERRAPADA 196 + +G +GP +GG + + W + + +P+ + + D Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 197 RGMLLVGAALAALMLGVETAGRGVLPAGAPALCLGAGVALGGLAIRHCRRVAHPAVDLSL 256 +G++L+ + ML + L + + ++H R+V P VD L Sbjct: 202 KGIILMSVGIVFFMLFTTSYSISFLIVSVLSF---------LIFVKHIRKVTDPFVDPGL 252 Query: 257 L-GIPTFHAATIAGSLFRAGAGALPFLVPLTLQVGFGASASRSGAITLASA-LGSLVMRP 314 IP G +F AG + +VP ++ S + G++ + + ++ Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFV-SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 315 MTHAALHRAPMRTVLIAGSVSFAAVLAACATLSPAWPDAAVFALLLVGGLSRSLSFASLG 374 + + R VL G + + L ++ V G S + + Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTVIS 370 Query: 375 ALVFSDVPSERLSAATSFQGTAQQLMRAVGVAVAAGALHLAML 417 +V S + + A S L G+A+ G L + +L Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLL 413
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.029 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 5/139 (3%) Query: 436 SALAGEAGKTMTEVTQAVARVTDIMGEIAAASGEQSRGIEQVNQAIAQMDEVTQQNAALV 495 S + + ++ V + E A + E ++ + +A Q +EV Q + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 496 EEAAAASKSLEEQGRHLTQAVSFFRASAASAAPQARHAAPAKPKAKRGVAAPAPAPRAAH 555 E +K + + + + PK ++ A A Sbjct: 1094 ETQTTETKETATVEKEEKA-----KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 556 AAPTFNKPAPALAAAATAS 574 PT N P TA Sbjct: 1149 NDPTVNIKEPQSQTNTTAD 1167
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 91.8 bits (228), Expect = 9e-23 Identities = 91/380 (23%), Positives = 145/380 (38%), Gaps = 64/380 (16%) Query: 32 ASTAHAQSSVVLYGLIDTSITYANNQRTHGAGSPGGPGWAVTSGALNASRWGLRGREDLG 91 A A + V LYG I + + + +GA + T S+ G +G+EDLG Sbjct: 12 ALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVE--TGTGIVDLGSKIGFKGQEDLG 69 Query: 92 NGVSAIFALENGFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDF--VT 149 NG+ AI+ +E AS A + G RQ++IGLK G L +GR ++ D + Sbjct: 70 NGLKAIWQVE---QKASIAGTDSG--WGNRQSFIGLK-GGFGKLRVGRLNSVLKDTGDIN 123 Query: 150 PLGASGPGWGGNLAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGQFGN 209 P + G N P R I +V+Y SP + G + Y ++ AG N Sbjct: 124 PWDSKSDYLGVNKIAEP-----EARLI----SVRYDSPEFAGLSGSVQYALNDNAG-RHN 173 Query: 210 NAAWSAGLSYANGPLKLGAGYLRINRNPNAANANGALSTTDGSATITGGSQQIWAVAGRY 269 + ++ AG +Y NG + G + QI + Y Sbjct: 174 SESYHAGFNYKNGGFFVQYGGAYKRH-------------HQVQENVNIEKYQIHRLVSGY 220 Query: 270 -AFGPHSIGAAWSHSATDRVSGVLQGGSIAKLDGNSLVFDNFTLDGRY-VVTPRLSLAAA 327 ++ A A L + + + TL R+ VTPR+S A Sbjct: 221 DNDALYASVAVQQQDAK------LVEENYSHNSQTEVA---ATLAYRFGNVTPRVSYAHG 271 Query: 328 YTYTMGRFDARSGETRPKWNHMVAQADYAFSIRTDAYLEAVYQRVSGGNGIPAFNATIWT 387 + + + + ++ +V A+Y FS RT A + A + + G G F +T Sbjct: 272 FKGSFDATNYNN-----DYDQVVVGAEYDFSKRTSALVSAGWLQ--EGKGESKFVSTA-- 322 Query: 388 LTPSANGNQVVVALGLRHRF 407 +GLRH+F Sbjct: 323 -----------GGVGLRHKF 331
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 28.6 bits (64), Expect = 0.040 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%) Query: 267 PTSGAAFMVAEWLRAQRDDGRTIVFIAPDEGHRYADTVYDDAWLRGQG 314 +G + R Q +DG ++ IAP E Y+ + G Sbjct: 334 KCAGGDLIHGA--REQWNDGANVLAIAPGEIIAYSRNHVTNKLFEENG 379
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 25.9 bits (56), Expect = 0.007 Identities = 8/11 (72%), Positives = 9/11 (81%) Query: 40 PKTPPFPPRRR 50 P+TPP PPR R Sbjct: 156 PRTPPLPPRER 166
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 7e-18 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 1/146 (0%) Query: 854 TVLIAEDNLLNRSLLLDQLTTLGVRVIEAKNGEEALALLLKEPVDVVMTDIDMPMMDGFQ 913 T+L+A+D+ R++L L+ G V N + D+V+TD+ MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 914 LLAEMRRLGMTMPVYAVSASARPEDVAEGRARGFTDYLAKPVSLERLETVVRACCSAP-A 972 LL +++ +PV +SA + +G DYL KP L L ++ + P Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 973 GARADEDAQDELPGLPDVPPAYASAF 998 ED + L A + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIY 150
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 2e-07 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 10 KVVVADDHPIVLRAVTDYVNSLPGFHVVASVSSGDALLSAMREQEVNLVVTDFTMHQAND 69 ++VADD + + ++ G+ V S+ L + + +LVVTD M Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVM----P 58 Query: 70 DKDGLRLISHLMRAYERTPIIVFT 93 D++ L+ + +A P++V + Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMS 82
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 54.1 bits (129), Expect = 2e-09 Identities = 76/232 (32%), Positives = 106/232 (45%), Gaps = 14/232 (6%) Query: 656 SGTNASATGENSTATGTASTASGSNSTANGANSTASGAGATATGENAAATGAGATATGNN 715 S A A + TA S + A G A G NA+A G + A G Sbjct: 19 SSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGAT 78 Query: 716 ASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTALGANAVAS 775 A A+ ++ A GA +IA+G NS A G S A G+ + +G ++ A DG A+GA A S Sbjct: 79 AEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDG-VAIGARASTS 137 Query: 776 GVGSVATGAGSVASGANSSAYGTGSNAAGAGSVAIGQGATASGSNSVALGTGSVASEDNT 835 G VA G S A NS A G S+ A A+ S+A+G S +N+ Sbjct: 138 DTG-VAVGFNSKADAKNSVAIGHSSHVA------------ANHGYSIAIGDRSKTDRENS 184 Query: 836 VSVGSAGSERRITNVAAGVNATDAVNVGQLNSAVSGIQHQMDGMQGQIDTLA 887 VS+G R++T++AAG TDAVNV QL + Q + ++ A Sbjct: 185 VSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANA 236 Score = 41.4 bits (96), Expect = 1e-05 Identities = 75/328 (22%), Positives = 118/328 (35%), Gaps = 5/328 (1%) Query: 480 ASGTNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTASGTNASATGE 539 A + N T S + A G A G +++A G +S A G A A Sbjct: 25 ADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKG 84 Query: 540 NSTATGTDSTASGTNSTANGTNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTA 599 + A G S A+G NS A G S A GD++ G ++A + AST+ + Sbjct: 85 AAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVG 144 Query: 600 NGTNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTANGTNSTASGDNSTASGTN 659 + + A + ++ +A S A G S NS + G S A+GT Sbjct: 145 FNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTK 204 Query: 660 AS-----ATGENSTATGTASTASGSNSTANGANSTASGAGATATGENAAATGAGATATGN 714 + A + +T S AN+ A ++ G T + + T Sbjct: 205 DTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLE 264 Query: 715 NASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTALGANAVA 774 NA + + N + NS A TA + +S + A + + A A+A Sbjct: 265 NARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALA 324 Query: 775 SGVGSVATGAGSVASGANSSAYGTGSNA 802 S + + ANS T SN+ Sbjct: 325 SANVYADSKSSHTLKTANSYTDVTVSNS 352 Score = 40.7 bits (94), Expect = 3e-05 Identities = 68/247 (27%), Positives = 105/247 (42%), Gaps = 6/247 (2%) Query: 417 ASGTNASASGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGT 476 A G NASA G +S A G + A+ + A G S A+G NS A G + A G+++ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 477 DSTASGTNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSN--STASGTNA 534 STA ST+ D A G N+ A +NS A G S + ++ S A G + Sbjct: 120 ASTAQKDGVAIGARASTS--DTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRS 177 Query: 535 SATGENSTATGTDSTASGTNSTANGTNSTASGDNSTASGTNASATGENSTATGTASTASG 594 ENS + G +S A GT T + + A + +T +A + Sbjct: 178 KTDRENSVSIGHESLNRQLTHLAAGTKDTDAVN--VAQLKKEIEKTQENTNKRSAELLAN 235 Query: 595 SNSTANGTNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTANGTNSTASGDNST 654 +N+ A+ +S+ G + + + ++ T EN+ A + N +NS A T Sbjct: 236 ANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLET 295 Query: 655 ASGTNAS 661 A S Sbjct: 296 AEEHANS 302 Score = 40.3 bits (93), Expect = 3e-05 Identities = 83/344 (24%), Positives = 131/344 (38%), Gaps = 12/344 (3%) Query: 392 LSTSVSGLQGSVSANTGTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGTNST 451 +S S + + S+ A + + T S A G + A G N++ Sbjct: 7 ISVSAALISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNAS 66 Query: 452 ASGDNSTASGTNASATGENSTATGTDSTASGTNSTANGTNSTASGDNSTASGTNASATGE 511 A G +S A G A A + A G S A+G NS A G S A GD++ G ++A + Sbjct: 67 AKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQ-K 125 Query: 512 NSTATGTDSTASGSNSTASGTNASATGENSTATGTDSTASGTNSTANGTNSTASGDNSTA 571 + A G ++ S + A G N+ A +NS A G S + AN S A GD S Sbjct: 126 DGVAIGARASTSDT-GVAVGFNSKADAKNSVAIGHSSHVA-----ANHGYSIAIGDRSKT 179 Query: 572 SGTNASATGENSTATGTASTASGSNST-----ANGTNSTASGDNSTASGTNASATGENST 626 N+ + G S A+G+ T A +T + N+ Sbjct: 180 DRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAY 239 Query: 627 ATGTASTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTANGA 686 A +S+ G + + S + +N+ S N + S A + TA Sbjct: 240 ADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEH 299 Query: 687 NSTASGAGATATGENAAATGAGATATGNNASASGTSSTAGGANA 730 ++ + E+A A A A+ N + S +S T AN+ Sbjct: 300 ANSVARTTLETAEEHANKKSAEALASANVYADSKSSHTLKTANS 343 Score = 39.9 bits (92), Expect = 5e-05 Identities = 106/459 (23%), Positives = 170/459 (37%), Gaps = 39/459 (8%) Query: 502 SGTNASATGENSTATGTDSTASGSNSTASGTNASATGENSTATGTDSTASGTNSTANGTN 561 S A A + T S + A G A G +++A G +S A G Sbjct: 19 SSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGAT 78 Query: 562 STASGDNSTASGTNASATGENSTATGTASTASGSNSTANGTNSTASGDN-----STASGT 616 + A+ + A G + ATG NS A G S A G ++ G STA D ++ Sbjct: 79 AEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSD 138 Query: 617 NASATGENSTATGTASTASGSNS--TANGTNSTASGDNSTASGTNASATGENSTATGTAS 674 A G NS A S A G +S AN S A GD S N+ + G S Sbjct: 139 TGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTH 198 Query: 675 TASGSNSTANGANSTASGAGATATGENAAATGAGATATGNNASASGTSSTAGGANAIASG 734 A+G+ T + N T EN A A N + + +SS G AN Sbjct: 199 LAAGTKDT-DAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIAN----- 252 Query: 735 ENSTANGANSTASGNGSSAFGESAAAAGDGSTALGANAVASGVGSVATGAGSVASGANSS 794 N +S ++ +A E+ A + D A++ + ++ T S A ++ Sbjct: 253 -----NYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTT 307 Query: 795 AYGTGSNAAGAGSVAIGQGATASGSNSVALGTGSVASEDNTVSVGSAGSERRITNVAAGV 854 +A + A+ + S S + + D TVS + + R Sbjct: 308 LETAEEHANKKSAEALASANVYADSKSSHTLKTANSYTDVTVSNSTKKAIRESNQYT--- 364 Query: 855 NATDAVNVGQLNSAVSGIQHQMDGMQGQIDTLARDAYSGIAAATALTMIPDVDPGKTLAV 914 H+ + ++D L G+A++ AL + + Sbjct: 365 ------------------DHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNF 406 Query: 915 GIGTANFKGYQASALGATARITQNLKVKTGVSYSGSNYV 953 G ++ QA A+G+ R+ +N+ +K GV+Y+GS+ V Sbjct: 407 TAGVGGYRSSQALAIGSGYRVNENVALKAGVAYAGSSDV 445
>FIMBRIALPAPE#Escherichia coli: P pili tip fibrillum papE protein signature. Length = 173 Score = 35.4 bits (81), Expect = 1e-04 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 18/135 (13%) Query: 198 VPLGDVRVDRFSGIGSTFADRNFSIGMTCTQPAGTYDIALTFSATADSSGAPGVLAITQG 257 V GD+ + G ++F++ M C GT + +T S+G G + Sbjct: 46 VNWGDIEIQNLVQSGGN--QKDFTVDMNCPYSLGTMKVTIT------SNGQTGNSILVPN 97 Query: 258 ASSASGVGIQLLMN-------GSPVTFGTVLDAGSATA-GATLTIPMTAR--YYQTGRVV 307 S+ASG G+ + + G+ VT G+ + G T I + A+ Y + + Sbjct: 98 TSTASGDGLLIYLYNSNNSGIGNAVTLGSQVTPGKITGTAPARKITLYAKLGYKGNMQSL 157 Query: 308 TPGAANGIATFAVSY 322 G + AT SY Sbjct: 158 QAGTFSATATLVASY 172
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 779 bits (2014), Expect = 0.0 Identities = 292/861 (33%), Positives = 449/861 (52%), Gaps = 43/861 (4%) Query: 2 LAAALAALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEA 61 L A A + L F+P FL Q ADLS + + PG Y V +++N Sbjct: 30 LFVACAFAAQAPLSSAELYFNPRFLA-DDPQAVADLSRFENGQELPPGTYRVDIYLNNGY 88 Query: 62 IERRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHA 121 + RD+TF D + +PCL+ G++ A+ + + +DACV + + A Sbjct: 89 MATRDVTFN---TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDA 145 Query: 122 RTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDAALLDYQLSAAQYAGGNFASAR 181 + D Q RLN+T+PQA + RARG + P WD GI+A LL+Y S Sbjct: 146 TAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNR---IGG 202 Query: 182 SRTTLYAGLRGAVNLGAWRLSHTSSFLRGL-----DGRNRFQIVNTFVQRDIAGWNSRLT 236 + Y L+ +N+GAWRL +++ +N++Q +NT+++RDI SRLT Sbjct: 203 NSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLT 262 Query: 237 AGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYS 296 G+G T +IFDG F G QL +D+ MLPDS +G+AP +HG+A+ AQVTI+QNG+ IY+ Sbjct: 263 LGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYN 322 Query: 297 TYVPPGPFTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQ 356 + VPPGPFTI+D+Y +SG+L+VTI EADG FT PYS+VP+L R+G RY++TAG+ Sbjct: 323 STVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGE 382 Query: 357 YR-DGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGIGKNLGSIGAVSLDVS 415 YR P F +TL GL +++YGG A Y++ GIGKN+G++GA+S+D++ Sbjct: 383 YRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMT 442 Query: 416 HARSAVDLADSRTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRSFADAVQLRDGSE 475 A S L D G + R LY K++ GT+ +L+ YRYST+GY +FAD R Sbjct: 443 QANS--TLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGY 500 Query: 476 PAAL------------------GAKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARST 517 KR +L+ TV Q+LGR ++Y + + QTYWG++ Sbjct: 501 NIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDE 560 Query: 518 VYQLGHSGNWGRASYGLYAAYSKGSGVPSSWN-VSLSLSMPLEVFFGGARVRAPAGGSAN 576 +Q G + + ++ L + +K + ++L++++P + A+ Sbjct: 561 QFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQW--RHAS 618 Query: 577 VSYFVSRNNENHVNQQMTASGSSSEQ-RLNYSVGVAHS----SESDVSGSVSTSYLAPFG 631 SY +S + + G+ E L+YSV ++ S +G + +Y +G Sbjct: 619 ASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYG 678 Query: 632 RYDASIDSGRGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVRGVRFEMHPGVS 691 + Q + +GG+L H GV QPL +TV +V P + + E GV Sbjct: 679 NANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVR 738 Query: 692 TDRAGEAVIPRLNPYRVNRIAVDQRRMPQDVEIRNPVSEVVPTRAAVVQTHFDSVVGLRA 751 TD G AV+P YR NR+A+D + +V++ N V+ VVPTR A+V+ F + VG++ Sbjct: 739 TDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKL 798 Query: 752 LFTLTRADGSFPPQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFVVRWGAARQNRCR 811 L TLT + P GA ++ Q G+V +G+ +++G+P A G V+WG C Sbjct: 799 LMTLTH-NNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA-GKVQVKWGEEENAHCV 856 Query: 812 VNYALPGKAANGAYTAVEATC 832 NY LP ++ T + A C Sbjct: 857 ANYQLPPESQQQLLTQLSAEC 877
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.8 bits (69), Expect = 0.008 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 181 DYVIADPEPRGGRLAME-RGVTWAARRHDHRF--GAHYPWTLRLTPPQDGAPASVEIDT 236 DY I +PEP G++ + G AR D F G Y +T+R DG VE D+ Sbjct: 472 DYCITNPEPASGKMWIAGDGGNQPARYDDFAFEAGKKYTFTMRRAGMGDGTDMEVEDDS 530
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 30.0 bits (67), Expect = 0.001 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 48 AAAAVAMAMAMAMAANDVARRRTDADR 74 AA + +AM+ AMAA D TD D+ Sbjct: 7 TAAIMGLAMSTAMAATDATSLTTDKDK 33
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 56.1 bits (135), Expect = 2e-11 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 10/201 (4%) Query: 17 ASPLRILFGLTQPLLYLFVLGAALRSGTYAEIGG--YQAYIFPGVVGLSLM----FTAIS 70 A+ +L L +PL+YLF LGA L +GG Y A++ G+V S M F I Sbjct: 30 AALASLLGHLAEPLIYLFGLGAGL-GVMVGRVGGVSYTAFLAAGMVATSAMTAATFETIY 88 Query: 71 AAVGIVHDRQTGLLNALLVSPVRRVDIALGKIGAGALLAWLQALLLLPFSPAIGIGLTAP 130 AA G + ++T A+L + +R DI LG++ A A L + + A+G Sbjct: 89 AAFGRMEGQRT--WEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY-TQWL 145 Query: 131 RLALLVAAMAFAALAFSALGLALALPFRSVIVFPVVSNTLLLPMFFLSGGLYPLDLAPDW 190 L + +A LAF++LG+ + S F ++ P+ FLSG ++P+D P Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIV 205 Query: 191 IRAAAAFDPAAYGVDLMRGVL 211 + AA F P ++ +DL+R ++ Sbjct: 206 FQTAARFLPLSHSIDLIRPIM 226
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.2 bits (128), Expect = 2e-09 Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 37/203 (18%) Query: 628 VLLTGATGFVGVHLLAQLLATTEAVIHCVVRARDAHDAERRVADKLRTYRLGVSERDRAR 687 L+TGA GF+G H+ +LL V+ + D +D L+ RL + + + Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVG-IDNLNDYYDV------SLKQARLELLAQPGFQ 55 Query: 688 IRCHAGDIAHDRLGMASADYDALSRC-----VDVVHHSA--SAVNF-IKPYAAMKRDNVD 739 H D+ AD + ++ + V S AV + ++ A N+ Sbjct: 56 F--HKIDL---------ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLT 104 Query: 740 GLVNVIRFAAAARVKALSLLSTISVYSWGHRITGKTVMREDDDLDQNLDAVCADIGYVKS 799 G +N++ +++ L S+ SVY + K DD +D + Y + Sbjct: 105 GFLNILEGCRHNKIQHLLYASSSSVYG----LNRKMPFSTDDSVDHPVSL------YAAT 154 Query: 800 KWVMEKLADA-ARARGLPLITFR 821 K E +A + GLP R Sbjct: 155 KKANELMAHTYSHLYGLPATGLR 177
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 34.6 bits (79), Expect = 3e-04 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 12 ATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQMARGL-KRGRN 70 ++ ++A+ AG + ++ + ++++ S E + R Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 71 RLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERR 117 L+ +L + +T ++ + C +G M ++ A L +E Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESY 138
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.8 bits (72), Expect = 0.005 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 2/139 (1%) Query: 244 IGVYGFVLWLPSIVKNGSALGMVATGWLSALP-YLAATIAMLAASWASDRFGSRKGFVWP 302 V GFV +P ++K+ L G + P ++ I DR G Sbjct: 270 GTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIG 329 Query: 303 FLLIGAAAFAASYTLGSTHFWLSYALLVVAGAAMYAPYGPFFAIVPELLPKNVAGGAMAL 362 + + AS+ L +T ++++ ++ V G + IV L + AG M+L Sbjct: 330 VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKT-VISTIVSSSLKQQEAGAGMSL 388 Query: 363 INSMGALGSFVGSYAVGYL 381 +N L G VG L Sbjct: 389 LNFTSFLSEGTGIAIVGGL 407 Score = 30.6 bits (69), Expect = 0.014 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%) Query: 35 AAAGINQDLGISKGLSSLIGALFFLGYFFFQIPGAIYAERRSVKTLVFWSLVLWGACASL 94 + I D ++ + F L + +++ +K L+ + +++ S+ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCF-GSV 94 Query: 95 TGVV--SNIPSLMAIRFLLGVVEAAVMPAML-IFISNWFTKRERSRANTFLILGNPVTVL 151 G V S L+ RF+ G AA PA++ + ++ + K R +A + + Sbjct: 95 IGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEG 153 Query: 152 WMSVVSGYLVHEFGWRHMFV 171 + G + H W ++ + Sbjct: 154 VGPAIGGMIAHYIHWSYLLL 173 Score = 29.8 bits (67), Expect = 0.021 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 268 TGWLSALPYLAATIAMLAASWASDRFGSRKGFVWPFLLIGAAAFAASYTLGSTHF-WLSY 326 T W++ L +I SD+ G ++ ++ ++ + +G + F L Sbjct: 51 TNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGF--VGHSFFSLLIM 108 Query: 327 ALLVVA-GAAMYAPYGPFFAIVPELLPKNVAGGAMALINSMGALGSFVG 374 A + GAA + +V +PK G A LI S+ A+G VG Sbjct: 109 ARFIQGAGAAAFPAL--VMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 334 bits (857), Expect = e-112 Identities = 127/357 (35%), Positives = 181/357 (50%), Gaps = 42/357 (11%) Query: 145 ERLTTVRSASAKPSGEGLVGGSDAFNAALSALQRVAPSMLPVLLLGESGTGKELFARALH 204 + + G LVG S A L R+ + L +++ GESGTGKEL ARALH Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 205 EASARAMGPFVVVDCSGIAETLFESELFGYEKGAFTGASARKPGLVETAQGGTLFLDEIG 264 + R GPFV ++ + I L ESELFG+EKGAFTGA R G E A+GGTLFLDEIG Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 265 DVPLSMQVKLLRLIESGTFRRVGGVEALCADFRLVAATHKPLKAMIGDGRFRPDLYYRIS 324 D+P+ Q +LLR+++ G + VGG + +D R+VAAT+K LK I G FR DLYYR++ Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 325 AYPISLPAVRERPGDMPLLVDSILRRIAALGPVAGQRFVVAPDALARLEAYAWPGNIREL 384 P+ LP +R+R D+P LV +++ G +AL ++A+ WPGN+REL Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG---LDVKRFDQEALELMKAHPWPGNVREL 358 Query: 385 RNVLDRACLLTDDGVIRVEHLPDEVAGGARIEPGAPA----------------------- 421 N++ R L VI E + +E+ P A Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 422 -------------KLSDDELARIARA---FGGTRRALAERVGMSERTLYRRLRALGI 462 L++ E I A G + A+ +G++ TL +++R LG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 114 bits (288), Expect = 6e-35 Identities = 41/98 (41%), Positives = 59/98 (60%) Query: 89 RRIAAAQDVAVITVALKLYRLDNGSYPTQAQGLQALIEKPTIDPIPNNWKETGYLTRLPN 148 + A D+ + AL +Y+LDN YPT QGL++L+E PT+ P+ N+ + GY+ RLP Sbjct: 41 DKQKAVSDIVALENALDMYKLDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPA 100 Query: 149 DPWGHAYQFLNPGRHGEIDVYSVGPATDFKYSLSIGSW 186 DPWG+ Y +NPG HG D+ S GP + I +W Sbjct: 101 DPWGNDYVLVNPGEHGAYDLLSAGPDGEMGTEDDITNW 138
>PF06776#Invasion associated locus B Length = 214 Score = 30.3 bits (68), Expect = 0.005 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%) Query: 148 PTTSSATPAPSAATPAPATATPSTAASAPAA-KKSRSSKKQDKAAAASAAAQASAPAAAS 206 P T+ A PA A PA +P A+ A + A A + + A Sbjct: 15 PVTNHAVPALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGWSDRADAQG 74 Query: 207 TTKAK 211 ++ Sbjct: 75 AVRSV 79
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 0.002 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 28/160 (17%) Query: 576 VVGQNEAIDAVADAIRRSRAGLADPNRPYGSFLFLGPTGVGKTELCKALAGFLFDSEEHL 635 +VG++ A+ + + R L + + G +G GK + +AL + Sbjct: 139 LVGRSAAMQEIYRVLAR----LMQTDLT---LMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 636 IRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSV-------ILLDEIEKA 688 + I+M+ + L G+E+G + T A R + LDEI Sbjct: 192 VAINMAAIPRDLIESEL-------FGHEKGAF-TGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 689 HPDVFNVLLQVLDDG---RMTDGQGRTVDFKNTVIVMTSN 725 D LL+VL G + D + IV +N Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280 Score = 32.9 bits (75), Expect = 0.005 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 27/166 (16%) Query: 136 LESAIAAVRGGSQ-------VHSQDAESQREALKKYTVDLTERARAG-KLDPVIGRDDEI 187 +AI A G+ ++ AL + ++ P++GR + Sbjct: 87 FMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAM 146 Query: 188 RRSIQILQRRTKNN-PVLI-GEPGVGKTAIVEGLAQRIVNGEVPETLKNKRVLSLDMAAL 245 + ++L R + + ++I GE G GK + L +N ++++MAA+ Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY-------GKRRNGPFVAINMAAI 199 Query: 246 --------LAGAKYRGEFEERLKAVLNDIAKDEGRTIVFIDEIHTM 283 L G + +G F + EG T+ F+DEI M Sbjct: 200 PRDLIESELFGHE-KGAFTGAQTRSTGRFEQAEGGTL-FLDEIGDM 243
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 28.9 bits (65), Expect = 0.009 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%) Query: 121 LKMIGEHGVQVALHTDVL-----VDVTVNVIGD 148 L + E+ VQV +HTD L V+ T+ I Sbjct: 235 LSVADEYDVQVMIHTDTLNESGFVEDTIAAIKG 267
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.1 bits (67), Expect = 0.023 Identities = 53/222 (23%), Positives = 73/222 (32%), Gaps = 21/222 (9%) Query: 84 DALVAAAELRRLGFAADAWMPIEVKPDDARWALERARAANVPIDEAAPESFDGYGWLVDG 143 + L AA AA A E +A+ E I A + G +V Sbjct: 205 NTLTAAKASIE---AAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVAT 261 Query: 144 LFGIGLARPLDGAFAAIAQRIAARARHTGRVLALDVPSGLDSDTGARVGGGTAVTATCTL 203 G GL + GA A++AQ I+ GRVLA S G ++T + Sbjct: 262 AAGRGLIQVAQGA-ASLAQAISDAIAVLGRVLA--------SAPSVMAVGFASLTYSSRT 312 Query: 204 SFIAAKPGLYTGDGRDLAGEIHVAPLDLGEPPAPAIRLNAPELFEAR--LPERAFASHKG 261 + T D A + A L P++ LNA LP R +G Sbjct: 313 AEQWQD---QTPDSVRYALGMDAAKLG----LPPSVNLNAVAKASGTVDLPMRLTNEARG 365 Query: 262 TYGSLGIVGGDTGMCGAPILAARAALFAGAGKVHVGFVGTGA 303 +L +V D + AA A G V T A Sbjct: 366 NTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTA 407
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.4 bits (94), Expect = 3e-05 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 15/192 (7%) Query: 92 KVLVEGLQRAQALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKI 151 L + L+ A S + + E A A+ E ++ K + Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAE-KAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 152 PPEILTSLSGIDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQ 211 E + E + + + + + LE A LE + +L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE---KAALEAEKADLEHQSQVLN 308 Query: 212 VEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEEGAD--LEELEKRINAARMPKEA 269 R ++R ++ S+ +Q++A ++L E + ++ + L + ++A+R EA Sbjct: 309 AN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEASRQSLRRDLDASR---EA 359 Query: 270 KKKADAELKKLK 281 KK+ +AE +KL+ Sbjct: 360 KKQLEAEHQKLE 371
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.009 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 12/112 (10%) Query: 51 EAAAAGVEASLSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRL-------KH 103 +A+ G L K E+ I+ + + +R L + + + Sbjct: 92 KASEKGAYDYLPKP--FDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149 Query: 104 LDKKDDVELSKSNILLIGPTGSGKTLLAQTLARL---LNVPFVIADATTLTE 152 + + +++ G +G+GK L+A+ L N PFV + + Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR 201
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 69.1 bits (169), Expect = 3e-15 Identities = 72/323 (22%), Positives = 118/323 (36%), Gaps = 37/323 (11%) Query: 20 AATLAALSGPAHAQSTLTLYGVADAGVQYLSRADGQHAAWRLQN-----YGILPSQLGIK 74 A TLAAL P A + +TLYG AGV SR+ + A L S++G K Sbjct: 7 ALTLAAL--PVAAMADVTLYGTIKAGV-ETSRSVAHNGAQAASVETGTGIVDLGSKIGFK 63 Query: 75 GEEDLGGGWRARFQLEQGINLNDGTATVPGYAFFRGAYVGMGGPAGTVTLGRQFSTLFDK 134 G+EDLG G +A +Q+EQ ++ + R +++G+ G G + +GR S L D Sbjct: 64 GQEDLGNGLKAIWQVEQKASIAGTDSGW----GNRQSFIGLKGGFGKLRVGRLNSVLKDT 119 Query: 135 TLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFDVEALAAMAGIAGNTRAGRV 194 +P S + + S+++ S FAG ++ A N AGR Sbjct: 120 GDI-NPWDSKSDYLGVNKIAEPEARLI-SVRYDSPEFAGL-SGSVQ----YALNDNAGRH 172 Query: 195 ------LELGGQFTSRGLSASAVLHRSH-GTAQGGADRSAQRRDIGTFAARYAFASLPLT 247 + + R H ++ R + + +AS+ + Sbjct: 173 NSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYASVAVQ 232 Query: 248 VHAGVQRLTGELDPARTIV-------WGGARYQASGRLGFAGGIYHTDSPTPQVGHPTLF 300 ++T V +G + S GF G T+ Sbjct: 233 QQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNN----DYDQV 288 Query: 301 IASTTCSLSKRTIAYLNLGYAKN 323 + SKRT A ++ G+ + Sbjct: 289 VVGAEYDFSKRTSALVSAGWLQE 311
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.009 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 254 AQTSGNVLAIASLMGIAGAALASYLGGRAARRAMLLAGYGILAASLVALAAAPNANGYTL 313 G +LA+ +LM A A + L R RR +LL A +A AP + Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI 101 Query: 314 A--IFGFKFAWTFVLPFMLASVAAVDATGRLIATLNLVIGSGLAAGPLAAGLMLDGGGTL 371 + G A V +A + D R ++ G G+ AGP+ GLM GG + Sbjct: 102 GRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM--GGFSP 159 Query: 372 RALFSIAAAVSLVSL 386 A F AAA++ ++ Sbjct: 160 HAPFFAAAALNGLNF 174
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.4 bits (92), Expect = 2e-05 Identities = 57/271 (21%), Positives = 97/271 (35%), Gaps = 13/271 (4%) Query: 74 AFTLPIALFALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFV 133 + L A + G +D + RR V+L+S +V ++A A + L + V Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVS-LAGAAVDYAIMATAPFLWV----LYIGRIV 105 Query: 134 GGCAGAMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVASVSPNAAF 193 G GA + + + E + S F AGP LGG + SP+A F Sbjct: 106 AGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPF 163 Query: 194 V---LSGLSYAGLIYVLSRSIRGAAARPPVRERLATMLVQGVRYCGRARGIRGTLIRSSL 250 L RP R A + R+ + + + Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRP--LRREALNPLASFRWARGMTVVAALMAVFFI 221 Query: 251 FGFLGSPVWALLPLFAKTQFGGEARTYGVLLASFGA-GAASGALGGAAGRARLGREALVR 309 +G AL +F + +F +A T G+ LA+FG + + A+ ARLG + Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281 Query: 310 LCTLTFAAGMLATAWSPCQAVAMLGLAVAGG 340 L + G + A++ +A + + Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLAS 312 Score = 35.2 bits (81), Expect = 5e-04 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 21 LAALRGPFAYRTFAAIWVAS-LVGNIGGSIQTVAASWLMTSMAPSPTMVSLVQTAFTLPI 79 LA+ R AA+ ++ +G + + T + + AF + Sbjct: 200 LASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILH 259 Query: 80 ALF-ALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFVGGCAG 138 +L A+++G A R ++L M + + LA A A ++ + G Sbjct: 260 SLAQAMITGPVAARLGERRALMLG---MIADGTGYILLAFATRGWMAFPIMVLLASG--- 313 Query: 139 AMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVA 185 + PA Q+ ++ QV + + GP L I A Sbjct: 314 GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 21/126 (16%) Query: 74 TVRSQVDGQITHVRFREGQQVRAGDVLVEIDRRALQAAADQATAKLEQDKATLANARLEL 133 ++ + + + +EG+ VR GDVL+++ +A + + L Q + ++ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 134 ----------------ARHQRLAEMNAAPVQML-----DTWKARVNELHAQIRGDQAAVQ 172 Q ++E + L TW+ + + + +A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 173 NARVAV 178 + Sbjct: 218 TVLARI 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 757 bits (1956), Expect = 0.0 Identities = 273/1033 (26%), Positives = 495/1033 (47%), Gaps = 26/1033 (2%) Query: 9 FIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLPGADPVSVASTLAQP 68 FIR P+ ++ ++ AG A LPVA P + P + VSA PGAD +V T+ Q Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 69 LETQFSKIPYVTQMTSQSTLS-STSIVLQFSLERSIDAAANDVQSAIDAAAAQLPADLPS 127 +E + I + M+S S + S +I L F D A VQ+ + A LP ++ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 128 PPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLSQIDGVGSVSIGGQQKP 185 + S +M+ +S T D DYV + + +LS+++GVG V + G Q Sbjct: 125 QGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 186 SIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVFNGT------TRSYTIYTNGQLTE 239 ++RI LD L L+ DV L + G GT + +I + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 240 PAQW-NGAIVAYRDGTPVRIRDIGQAVLGPEDNTLAAWIDGRRAISVGIYKKPGANTVST 298 P ++ + DG+ VR++D+ + LG E+ + A I+G+ A +GI GAN + T Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 299 VDKIRARLPELEASLPPSLKIAVLADRTQTIRASLLDIELTLLLNVVLVVVVIYAFLGSV 358 I+A+L EL+ P +K+ D T ++ S+ ++ TL ++LV +V+Y FL ++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 359 RTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENIARH-VE 417 R T+IP + VPV L G A++ GYS++ +++ M +A+G +VDDAIV+VEN+ R +E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 418 AGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVTLSMTIIVSA 477 P +A K +S+ + I++ L AV +P+ G G ++R+F++T+ + +S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 478 FVSLTLTPMMASYLLRAHRHDAGRPPRP--GLFERAFARTAAAYERALDVALRHRFVTLC 535 V+L LTP + + LL+ + G F F + Y ++ L L Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 536 AFFASVAASVFLYVGIPKGFFPQQDTGVITGISEAAQTISVEDMARHSMALAAIIRADPA 595 + VA V L++ +P F P++D GV + + + E + + + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 596 --VEHCQMAVGGSAYAGTTVNNGRWYITLKPRDQRDA---TADEVIRRLRPQFAKVPGVR 650 VE V G +++G N G +++LKP ++R+ +A+ VI R + + K+ Sbjct: 603 ANVES-VFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 651 MYLQAAQDVIIGARLARTQYQLTLQSA-DVGALTTWAPRLLARLSGLP-QLRDVASDQQV 708 + ++ ++L Q+ ALT +LL + P L V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 709 NGSALSVAIDRDQAARYGLTPEAIDGTLYDAFGSRQVAQYFTQLSTYKVIMETLPSLQRD 768 + + + +D+++A G++ I+ T+ A G V + + K+ ++ + Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 769 PGTLDRIYMKAPSGALVPLSSVARWTTDTVQPLSVNHQSHFPSVTISFNLAPGVSLGEAT 828 P +D++Y+++ +G +VP S+ + + + PS+ I APG S G+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTT-SHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 829 AAIEAAQASLRMPPAVVGSFQGTAQAFQSTLATMPMLILSALIVAYLVLGALYGSFIHPW 888 A +E + ++P + + G + + + P L+ + +V +L L ALY S+ P Sbjct: 841 ALMENLAS--KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 889 TILSTLPSAGVGAIATLWLFKYDFNLIALIGVILLIGIVKKNGIMMVDFAIAATRERNMT 948 +++ +P VG + LF ++ ++G++ IG+ KN I++V+FA + Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 949 SLDAIRSACLLRLRPIMMTTMTALFGALPLMFTPGMGSELRQPLGYAMVGGLLVSQVLTL 1008 ++A A +RLRPI+MT++ + G LPL + G GS + +G ++GG++ + +L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1009 FTTPVIYLYLDTL 1021 F PV ++ + Sbjct: 1019 FFVPVFFVVIRRC 1031 Score = 89.9 bits (223), Expect = 3e-20 Identities = 78/509 (15%), Positives = 163/509 (32%), Gaps = 37/509 (7%) Query: 4 NLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLP-GADPVSVA 62 N + L+ A I+ V + LP + LP+ + LP GA Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 63 STLAQPLETQF---SKIPYVTQMTSQSTLSSTS-------IVLQFSLERSIDAAANDVQS 112 L Q + + + S + + L+ ER + N ++ Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEER--NGDENSAEA 645 Query: 113 AIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAIS---------STLPLTTIDDYVETR 163 I A + L + I+ L + + L + Sbjct: 646 VIHRAKME----LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQL 701 Query: 164 LTKSLSQIDGVGSVSIGGQQ-KPSIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVF 222 L + + SV G + ++++D K + G+S D+ + +S G F Sbjct: 702 LGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF 761 Query: 223 NGTTRSYTIYTNGQ---LTEPAQWNGAIVAYRDGTPVRIRDIGQAVLGPEDNTLAAWIDG 279 R +Y P + V +G V + L +G Sbjct: 762 IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLER-YNG 820 Query: 280 RRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTIRASLLDIELT 339 ++ + PG ++ A + L + LP + + R S Sbjct: 821 LPSMEIQGEAAPG----TSSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPAL 875 Query: 340 LLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVG 399 + ++ V+V + + A S + + VP+ + G + D ++ + +G Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 400 FVVDDAIVMVENI-ARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGII 458 +AI++VE + G+ ++A L + I SL+ + +LPL + +G Sbjct: 936 LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 459 GRMFREFAVTLSMTIIVSAFVSLTLTPMM 487 + + ++ + +++ P+ Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.019 Identities = 40/211 (18%), Positives = 59/211 (27%), Gaps = 23/211 (10%) Query: 335 SDRLSLFADVGYTRNFHG--AAGGMNAFDSDVEMFSIGADYKLSEASRAGALLSSGNANG 392 S+ + L Y RN + A N + + Y G L G Sbjct: 1331 SNNVQLGGVFTYVRNSNNFDKATSKNTL----AQVNFYSKYYADNHWYLGIDLGYGKFQS 1386 Query: 393 SLAGGQGR-IGLHAYRLGVY--HAFERAGLFVRAYAGAGWSR-----YRL--DRAAVLPG 442 L H + G+ AF + G +S + L R V P Sbjct: 1387 KLQTNHNAKFARHTAQFGLTAGKAFNLGNFGITPIVGVRYSYLSNADFALDQARIKVNPI 1446 Query: 443 AVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQLVARGYTEDGDPILAQNVGVQR 502 +V+ + + D Y + LG + P+ Y G A NV Q+ Sbjct: 1447 SVKTAFAQVDLS------YTYHLGEFSVTPILSARYDANQGSGKINVNGYDFAYNVENQQ 1500 Query: 503 LKGVSAGAGVRFAAPLAAIGRRAGELSAEAQ 533 L+ IG AE Q Sbjct: 1501 QYNAGLKLKYH-NVKLSLIGGLTKAKQAEKQ 1530
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 32.0 bits (72), Expect = 0.002 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 36 SARPAGELTMIAGLSPSAASAHLARLTDGGLLAL---DVRGRHRYYRIATPDIAAAIEAL 92 R A + + ++P A A + G +A + R + P+ A +EA+ Sbjct: 254 GTRYAIDKAAMRNIAPLPAEGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAV 313 Query: 93 ANVAQAA 99 NVA AA Sbjct: 314 FNVAAAA 320
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.7 bits (100), Expect = 6e-06 Identities = 42/263 (15%), Positives = 63/263 (23%), Gaps = 12/263 (4%) Query: 583 NPAARAGERPQPNMPQPNAAQPNAAQPNIARPGQPQPGVAQPTAPHAPGTPPNAMRPDAA 642 NP + + N PN Q P P AP PP P Sbjct: 982 NPEVEKRNQT---VDTTNITTPNNIQ--ADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 643 RPNEARPAPAPSARNGVPRPPAAVENPGMRDEARAPGEAPRPQPSWTQPHPPIQQQRANE 702 A + S A R+ A+ EA + TQ + Q + Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAK---EAKSNVKANTQTNEVAQSGSETK 1093 Query: 703 GGPRASGEPNAPLNYRSPTQNALPPIRSTPTPTHSAPPAPPPAERAQPQPQPGPTPRNAM 762 + A + + + P T P +E QPQ +P + Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 763 RAPEAPRQEVAPPAPRNEYRAPAPAPRPQIE--APRMEAPRMP-APRAEAP-RMEPRPAP 818 E Q + + + + P P +P Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 819 PPPAVPHNPPPAPRQEPPHQARP 841 P N + PH P Sbjct: 1214 ESSNKPKNRHRRSVRSVPHNVEP 1236
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 376 bits (966), Expect = e-129 Identities = 133/388 (34%), Positives = 202/388 (52%), Gaps = 40/388 (10%) Query: 101 FDYVTVPYECDRIVESVGHAYGMVTLSEGLAPAAATVRNEGEMVGTCEAMLALFKMIRKV 160 +DY+ P++ ++ +G A + + ++ +VG AM +++++ ++ Sbjct: 99 YDYLPKPFDLTELIGIIGRA--LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156 Query: 161 ASTDAPVFISGESGTGKELTAVAIHERSSRAGAPFVAINCGAIPPTLLQAELFGYERGAF 220 TD + I+GESGTGKEL A A+H+ R PFVAIN AIP L+++ELFG+E+GAF Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 221 TGANQRKIGRIEAANGGTLFLDEIGDLPFESQASLLRFLQEHKVERVGGHQSIPVDVRII 280 TGA R GR E A GGTLFLDEIGD+P ++Q LLR LQ+ + VGG I DVRI+ Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIV 276 Query: 281 SATHVDMQIALRNGRFREDLYHRLCVLKLEEPPLRERGKDIEILARHMLERFKGDAHRRL 340 +AT+ D++ ++ G FREDLY+RL V+ L PPLR+R +DI L RH +++ + + + Sbjct: 277 AATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDV 335 Query: 341 RGFTPDAIAALHNYAWPGNVRELINRVRRAIVMSEGRMISAADLELSGYAEVA------- 393 + F +A+ + + WPGNVREL N VRR + +I+ +E +E+ Sbjct: 336 KRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKA 395 Query: 394 ------------------------------PMSLEEARESAERHAIEVALLRHRGRLADA 423 + E I AL RG A Sbjct: 396 AARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKA 455 Query: 424 ARELGVSRVTLYRLLCAYGMRDDGGARA 451 A LG++R TL + + G+ +R+ Sbjct: 456 ADLLGLNRNTLRKKIRELGVSVYRSSRS 483
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 109 bits (273), Expect = 8e-35 Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Query: 2 TKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVG 61 K +L+A++A +L KD+ AV + A+S L+KG ++++ GFG+F + R AR G Sbjct: 3 NKQDLIAKVAEA-TELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKSGEKVQVPEKHVPHFKPGKELRERV 90 RNP++GE++++ VP FK GK L++ V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 168 bits (426), Expect = 4e-53 Identities = 75/146 (51%), Positives = 99/146 (67%), Gaps = 3/146 (2%) Query: 74 AQAPAPAPVAPVAPAITSQKITYQADTLFDFDKAVLKPAGKQKLDELAAKIQGMNVE--V 131 AP AP AP + ++ T ++D LF+F+KA LKP G+ LD+L +++ ++ + Sbjct: 195 EAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGS 254 Query: 132 VVATGYTDRIGSDKYNDRLSLRRAQAVKSYLVSKGVPANKVYTEGKGKRNPVTGNTC-KQ 190 VV GYTDRIGSD YN LS RRAQ+V YL+SKG+PA+K+ G G+ NPVTGNTC Sbjct: 255 VVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNV 314 Query: 191 KNRKQLIACLAPDRRVEVEVVGTQEV 216 K R LI CLAPDRRVE+EV G ++V Sbjct: 315 KQRAALIDCLAPDRRVEIEVKGIKDV 340
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 30.4 bits (68), Expect = 0.029 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 13 RLAAACAAALAWPAAHAASTAAAVPADSTPAAAAEMTASGKTLDTVKVT 61 R+ +A AAAL A A+TA V A +T A + + A+ V VT Sbjct: 6 RIVSAAAAALL-AVAPIAATAMPVNAATTINADSAINANTNAKYDVDVT 53
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 127 bits (321), Expect = 5e-36 Identities = 89/386 (23%), Positives = 143/386 (37%), Gaps = 62/386 (16%) Query: 1 MKKTLIVAALSGVFATAAHAQSSVTLYGLIDAGITYTNNQGGHSAWS-----QSTGSVNG 55 MKK+LI L+ + A + VTLYG I AG+ + + + A + + G Sbjct: 1 MKKSLIALTLAALPVAAM---ADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 56 SRWGLRGAEDLGGGLKAIFVLENGFGINNGTLKQNGREFGRQAFVGLSHEQYGALTLGRQ 115 S+ G +G EDLG GLKAI+ +E I + RQ+F+GL +G L +GR Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLK-GGFGKLRVGRL 112 Query: 116 YDSVVDYLG--PLSLTGTQFGGTQFAHPFDNDNLNNSFRVNNAVKYTSVNWAGLKFGALY 173 + D P G + A P + S V+Y S +AGL Y Sbjct: 113 NSVLKDTGDINPWDSKSDYLGVNKIAEP---EARLIS------VRYDSPEFAGLSGSVQY 163 Query: 174 GFSNNNQFANNRAYSAGVSYSYAGFNIGAGYLQLNNNFGPTVSNASGAVALDNTFVGKRQ 233 ++N N+ +Y AG +Y GF + G ++ ++ Sbjct: 164 ALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQV------------QENVNIEKY 211 Query: 234 RVFGGGLNYTFGPATAGFVFTQSRVNRATAIGAGASGVSSGIALDGTFMRFNNYEVNARY 293 ++ Y A + + A + S S RF N Sbjct: 212 QIHRLVSGYD---NDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFG----NVTP 264 Query: 294 AITPAWTVAGSYTYTAGFIENHHPGWNQFNLQTAYALSKRTDVYLQGVYQKVNNDGTGLG 353 ++ A GS+ T N++ ++Q + Y SKRT + + + +G G Sbjct: 265 RVSYAHGFKGSFDAT-----NYNNDYDQVVVGAEYDFSKRTSALVSAGWLQ---EGKGES 316 Query: 354 AYINGIGGMSSTEKQIAVTAGLRHRF 379 ++ A GLRH+F Sbjct: 317 KFV-----------STAGGVGLRHKF 331
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 4e-05 Identities = 15/59 (25%), Positives = 21/59 (35%) Query: 81 RRAFVSELWVAHAVRHLRGGVLLVNTARAWLATRGAGEIYAWIADQNRSAIRFYEHVGF 139 A + ++ VA R G L++ A W + D N SA FY F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 66.3 bits (161), Expect = 1e-13 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 21/104 (20%) Query: 396 PGTDVVIAPDVRPNPNPA---------------------PYPLPAPNPSPVPNPEPVPVP 434 PGT V + P N NP P P P + PN +P+P Sbjct: 272 PGTKVNMGPVTDRNGNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEV 331 Query: 435 NPEPNPSPNPEPNPNPNPNPNPNPNPNPNPNPNPNPNPNPNPDP 478 +P NP+ NP PN NP PNP P+P+ NP+ NP+ + P P Sbjct: 332 SPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRP 375 Score = 66.3 bits (161), Expect = 1e-13 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 377 ADPFAVIPTLADLLSRAATPGTDVVIAPDVRPNPNPAPYPLPAPNPSPVPNPEPVPVPNP 436 +P V+ T T V+ PD+ P AP P P SP NP P PN Sbjct: 286 GNPVQVVATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNE 345 Query: 437 EPNPSPNPEPNPNPNPNPNPNPNPNPNPNPNPNPNPN-PN 475 P PNPEP+P+ NP+ NP+ + P P+ P+ PN Sbjct: 346 NPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPN 385 Score = 60.5 bits (146), Expect = 9e-12 Identities = 27/73 (36%), Positives = 36/73 (49%) Query: 406 VRPNPNPAPYPLPAPNPSPVPNPEPVPVPNPEPNPSPNPEPNPNPNPNPNPNPNPNPNPN 465 V P P+ P APN P+P P P P P+ NP PNP P+P+ NP+ NP+ + Sbjct: 309 VIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTD 368 Query: 466 PNPNPNPNPNPDP 478 P P+ P Sbjct: 369 GQPGTRPDSPAVP 381 Score = 36.6 bits (84), Expect = 3e-04 Identities = 21/74 (28%), Positives = 29/74 (39%) Query: 444 PEPNPNPNPNPNPNPNPNPNPNPNPNPNPNPNPDPSIAQNVNVVNVPSVNVINRVAVDVG 503 P P+ P PN P P +P NP NP P+ + N P +N D Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQ 370 Query: 504 PDPEIKTPSLEDTP 517 P +P++ D P Sbjct: 371 PGTRPDSPAVPDRP 384
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 110 bits (276), Expect = 6e-29 Identities = 82/381 (21%), Positives = 153/381 (40%), Gaps = 33/381 (8%) Query: 10 VDLRFVPVAQVVDLIYADMLKVPYVIAPEVLADQRLISFRFDARDGDVRNFMRGFLASLG 69 +++ + V Y+ +++P+V + + D + ++R+F L + Sbjct: 24 IEMNNSSLRDFVT-WYSKQTGESVIVSPDVKG--TVTVYSSDVKPENLRDFFISVLRANN 80 Query: 70 FTVDTRDGMDYVSKRDAISSEPQDSYVYHPRYRDAEYLSRLVQPLFEGRFTTNRDIATSA 129 F + + K + QD P + EY G F D T Sbjct: 81 FDM-VGSIPSIIQK---YNPNNQDYIDELPSSDNQEYDD--NSAPSGGFFVPQNDNVTQT 134 Query: 130 ----NARMRAASP----------PTSAAAILDQATDALVFIGSAGEISALKKLLPQVDTP 175 N R + S+ + ++ LV + L + L VD P Sbjct: 135 FKINNVRAKDLIRVVELFVKSNTSKSSNVLSVDGSNLLVVSAPKDILDNLPQFLSTVDLP 194 Query: 176 VGQVAVRAWVYEVSKQEDNNSAFQLALRLLGGRVGASIGSGTIGDDSNAIRLRAGGFEAA 235 Q+ + ++EV Q+ + F A G V + + + ++ G F Sbjct: 195 TDQILIEGLIFEV--QQGDALDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGD 252 Query: 236 I-----AALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVV-GSVSYPSA-SGAPVQSV 288 + AL ++S ++++ P + SGQ ++VGQ+VP + G V+ SA P Q+V Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTV 312 Query: 289 QYQDAGVIFQVQPTVKASAIDLNVIEEISDFVRTTTGVNNSPTKNTRKLESSFSVEDGDA 348 + Q+ G+ V P A + I +D + ++T ++ T N R + ++ ++ DG Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDVIT-NQRSIATTVNLRDGQT 371 Query: 349 VLIGGLTQDKESHLDSGLSFL 369 +L+GGLT K + DSG+ FL Sbjct: 372 LLLGGLTDYKNTSQDSGVPFL 392
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.1 bits (65), Expect = 0.011 Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 72 KLDRIARSLKHLLSIIDRLQERGAGFESLTEHIDTNSPAGRLMLQMLGAFAEFEREMIRE 131 K +++ +S + + + +E S+ +I+ + E ++E+I Sbjct: 389 KYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEI--------EEIKKELIET 440 Query: 132 RTKSGMQAAKRRGIRLGRPRSLESED 157 + K + + +P S+D Sbjct: 441 GYIKFKKIYKSKKSKTSKPMHFISKD 466
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 54.1 bits (130), Expect = 3e-10 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 149 VHAIAPKAKI----VLVEAASNSFNDLMTAVDVAVGAGASVVSMSFGGSEFSSETSFDSH 204 V +AP+A + VL + S ++ ++ + A+ ++SMS GG E E Sbjct: 103 VVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELHEAVK 162 Query: 205 FGAPSNVTFVASSGDSGNGTE------YPAASPYVVAVGGTTLSADAS 246 S + + ++G+ G+G + YP V++VG AS Sbjct: 163 KAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHAS 210
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.014 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 4/61 (6%) Query: 1 MLEINANRRREKVQRATATAAELKAFNAMCTELAKNLGFKSLKELHEKTGDAEVSMKILM 60 + + + V+ + A + F SLK E+ GD + ++ Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSGQA----QNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 61 A 61 Sbjct: 649 R 649
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 27.3 bits (60), Expect = 0.018 Identities = 11/75 (14%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 21 ARWHRTAEDRARQRRFMEGIQTMIDQQLEIMQMEKDEPITLTPEDQSWDLVQVLRKSLPD 80 + ++ ++R+ +E + ++QL++ + E+ L+ E ++ V++ +K L Sbjct: 144 EAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKA---VEIAQKKLSA 200 Query: 81 LRNELAHGSSTLSNQ 95 ++E+ + Sbjct: 201 AQSEVVKMDGEIKTL 215
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 72.1 bits (177), Expect = 8e-16 Identities = 53/301 (17%), Positives = 108/301 (35%), Gaps = 50/301 (16%) Query: 288 VMVTGAGGSIGSELCRQILKFQPAQLIAFD-LSEYAMYRLTEELRERFPDLPVVPIIGDA 346 +VTGA G IG + +++L+ Q++ D L++Y L + E D Sbjct: 3 YLVTGAAGFIGFHVSKRLLE-AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 347 KDSLLLDQVMSRYAPHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRH 406 D + + + VF + V E N +N+ G + + ++H Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 407 FVLIST---------------DKAVNPTNVMGASKRLAE-MACQALQQTSARTQFETV-- 448 + S+ D +P ++ A+K+ E MA S Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTY----SHLYGLPATGL 176 Query: 449 RFGNVLGSAGS---VIPKFQQQIAKGGPVTV-THPEITRFFMTIPEASQLVLQA------ 498 RF V G G + KF + + +G + V + ++ R F I + ++ +++ Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 499 ------------SSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIEFSGLRPG 546 ++ ++ + PV+++D + L G + + L+PG Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNMLPLQPG 293 Query: 547 E 547 + Sbjct: 294 D 294
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 107 bits (268), Expect = 6e-29 Identities = 68/344 (19%), Positives = 130/344 (37%), Gaps = 42/344 (12%) Query: 3 RVIVTGANGFVGRALCRALLAAGHEVTGL-------------VRRRGVCTEGVSEWVHEA 49 + +VTGA GF+G + + LL AGH+V G+ R + G H+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ--FHKI 59 Query: 50 D--DFDGVADRWPAGLQVDAVVHLAARVHMMRDRSPDPDAAFRASNVAATMRVARAARQQ 107 D D +G+ D + +G + V R+ + S + A+ SN+ + + R Sbjct: 60 DLADREGMTDLFASG-HFERVFISPHRLAV--RYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 108 GARRFVFLS--SVKAIAESDGGTPLCE-NSTPAPQDAYGRSKLEAERALEQLRDELSFDT 164 + ++ S SV + P +S P Y +K E Sbjct: 117 KIQHLLYASSSSVYGLNRKM---PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 165 VIVRPPLVYGPGVRAN--FLSLMRAVSRGVPLPL-GAVRARRSMVYVDNLADAVMRCVTE 221 +R VYGP R + +A+ G + + + +R Y+D++A+A++R Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 222 PAATNGCFHVADSDMPPTIAEL-LDDIGHHLGRPARLLPVPERLLRVAGALTGRAAQ--- 277 + + V +IA + +IG+ P L+ ++ G A+ Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGN--SSPVELM----DYIQALEDALGIEAKKNM 287 Query: 278 IDRLTSDLR---LDTTHIRTVLDWRPPRSSEEGLAETACWFKSL 318 + D+ DT + V+ + P + ++G+ W++ Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 168 bits (426), Expect = 2e-51 Identities = 83/363 (22%), Positives = 136/363 (37%), Gaps = 58/363 (15%) Query: 6 KILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAE----LVVAD 61 K LVTG AGFIG +S+RL + V +DNL+ + +++ L A+ D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDY-YDVSLKQARLELLAQPGFQFHKID 60 Query: 62 VTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVV 121 + D L + E + SL +A N+ G + + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--I 118 Query: 122 EHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRADRTEPRPT 181 +H+L SS +VYG +P D + P Sbjct: 119 QHLLYASSSSVYGLN------------------------------RKMPFSTDDSVDHPV 148 Query: 182 SVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKKV 241 S+Y ATK A E + +S P + LR VYGP + F++ E K Sbjct: 149 SLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALF----KFTKAMLEGKS 204 Query: 242 IPLYEDGNVTRDFVSIDDVADAIVATLVRTPEA-----------------LSLFDIGSGQ 284 I +Y G + RDF IDD+A+AI+ P A +++IG+ Sbjct: 205 IDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSS 264 Query: 285 ATSILDMARIIAAHYGAPEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGEL 344 ++D + + G + + GDV + D +G+ P+ ++K G+ Sbjct: 265 PVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNF 324 Query: 345 QTW 347 W Sbjct: 325 VNW 327
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 30.3 bits (68), Expect = 0.007 Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 195 LFTMVLMFLSPVFYPASALPEKYRFWLELNPLTLFIEQSRGILLEGRVPDFHPLGLAFL 253 L ++FLS +P LP ++ PL+ I+ R I+L V D A Sbjct: 184 LVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALC 242
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 58.3 bits (141), Expect = 8e-12 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 27/160 (16%) Query: 1 MKILVTGANGQVGWELARSLAVLGQVV-----------PLTRE--------------QAD 35 MK LVTGA G +G+ +++ L G V ++ + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 36 LGRPETLARIVEDAKPDVVVNAAAYTAVDAAETDGAAANVINGEA-VGVLAAATKRVGGL 94 L E + + + V + AV + + A N + +L Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 95 FVHYSTDYVFDGTKPSPYIETDPT-CPVNAYGASKLLGEL 133 ++ S+ V+ + P+ D PV+ Y A+K EL Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL 160
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.017 Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 9/197 (4%) Query: 306 ANALSVANPAALTAAANTVAGTLARAANGTPVAGAIGGLVAALPVANPAGALTSAANNAA 365 A A A A AA A T A ANG+ VA A G + VA A +L A ++A Sbjct: 228 AEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGR--GLIQVAQGAASLAQAISDAI 285 Query: 366 STIATVAGTNPAAAIGGVAGALTGAAGTGVATASQLGSVGSALMGSGAASAGKVLTSGSA 425 + + V + P+ G A +LT ++ T Q +G AA G + Sbjct: 286 AVLGRVLASAPSVMAVGFA-SLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLN 344 Query: 426 AFGSAAASAGL-----LLTTGAAAASSVVNSLGSSV-GAVVASLPNLSVSSSKSTAAASN 479 A A+ + L G SVV++ G SV AV + + ++ + Sbjct: 345 AVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPS 404 Query: 480 PLAPVSSMVATLVGALP 496 A ++ T A P Sbjct: 405 TTAEAPPLILTWTPASP 421
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.7 bits (170), Expect = 4e-16 Identities = 65/249 (26%), Positives = 100/249 (40%), Gaps = 26/249 (10%) Query: 12 ITGASAGLGRALARAYARPGVVLSLGGRDAVRLEESAADCRACGATVFVASIDVRDADAM 71 ITGA+ G+G A+AR A G ++ + +LE+ + +A DVRD+ A+ Sbjct: 13 ITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAI 72 Query: 72 R----RWLEQFDDAHPIHLLIANAGVASTLAHGGDWEARERTAAIVDTNFYGAMNAVLPV 127 R + PI +L+ AGV + E A N G NA V Sbjct: 73 DEITARIEREMG---PIDILVNVAGVLRPGLI--HSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 128 IDRMRARGSGQVALISSLAALRGMAISPAYCASKAALKAWGDSVRPVLKRDGIRLSVVLP 187 M R SG + + S A AY +SKAA + + L IR ++V P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 188 GFVKTAMSDVFPADKPLLWSPDKAAQYIQRGIAARRAEIAFPALLALGMRLLPLL-PAVM 246 G +T M + LW+ + A+ + +G G+ L L P+ + Sbjct: 188 GSTETDM-------QWSLWADENGAEQVIKGSLET---------FKTGIPLKKLAKPSDI 231 Query: 247 ADTILGRLS 255 AD +L +S Sbjct: 232 ADAVLFLVS 240
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 129 bits (326), Expect = 5e-37 Identities = 80/352 (22%), Positives = 137/352 (38%), Gaps = 52/352 (14%) Query: 4 RVLITGITGMVGSHLADFLLENTDWEIYGLCRWRSPLDNV-SHLLPRINEKNRIRL---- 58 + L+TG G +G H++ LLE ++ G+ DN+ + + + L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGI-------DNLNDYYDVSLKQARLELLAQPG 53 Query: 59 ---VYGDLRDYLSIHEAVKQSTPDFVFHLAAQSYPKTSFDSPLDTLETNVQGTANVLEAL 115 DL D + + + VF + + S ++P ++N+ G N+LE Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 116 RKNNIDAVTHVCASSEVFGRVPREKLPIDEE-CTFHPASPYAISKVGTDLIGRYYAEAYN 174 R N I + +SS V+G K+P + HP S YA +K +L+ Y+ Y Sbjct: 114 RHNKIQHLL-YASSSSVYGL--NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 175 MTVMTTRMFTHTGPR-RGDVFAESTFAKQIAMIERELIPPVVKTGNLDSLRTFADVRDAV 233 + R FT GP R D+ A F K AM+E + + R F + D Sbjct: 171 LPATGLRFFTVYGPWGRPDM-ALFKFTK--AMLEGK---SIDVYNYGKMKRDFTYIDDIA 224 Query: 234 RAYYMLVTINPI-----------------PGAYYNIGGTYSCTVGQMLDTLISMSTSKDV 276 A L + P P YNIG + + + L +D Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQAL------EDA 278 Query: 277 IRVETDPE--RLRPIDADLQVPNTRKFEAVTGWKPEISFEKTMEDLLNYWRA 326 + +E L+P D +T+ V G+ PE + + +++ +N++R Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 45.2 bits (107), Expect = 1e-07 Identities = 59/332 (17%), Positives = 106/332 (31%), Gaps = 82/332 (24%) Query: 1 MKVFLVGSTGYIGKTLFDACSQR-WRTLGT-STRDGADIVFSLARAEAFPYEQVSA--GD 56 MK + G+ G+IG + + + +G + D D+ AR E D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 ------------------VVAVAA------AISSPDACAKDYETAFQVNVTGTLTLIRGV 92 V ++ +P A Y N+TG L ++ G Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA----Y---ADSNLTGFLNILEG- 112 Query: 93 VARGA---RVIFFSSDTVYGASEQLLSEEAELT--PAGAYGAMKRRVEA---ELGENAAV 144 R +++ SS +VYG + ++ + P Y A K+ E + Sbjct: 113 -CRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 145 KVIRLSY--VFSLRDR-------FTQYLLGCAKEGKRADIFK--PFSRCVVYLSDVVEGV 193 L + V+ R FT+ +L EGK D++ R Y+ D+ E + Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAI 227 Query: 194 VSLIE-------RWD---------AIDERVINFVGPELVAREDFVEKIRNLAAPELDYGF 237 + L + +W RV N V D+++ + + E Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 238 SEP-EGDFFVNRPRIINVSSARFEKLLGRRPR 268 GD + + +++G P Sbjct: 288 LPLQPGDVLETSA---DTKALY--EVIGFTPE 314
>PF05043#Transcriptional activator Length = 493 Score = 29.9 bits (67), Expect = 0.007 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Query: 48 RHLEEIGASLRIDIDE---IESWCVDELKSREVGENDGGKQIDISVTDFILANCRQKRLF 104 H + + +L +E W EL+ + D DI +++FI+ KRL Sbjct: 414 YHAKFVAETLSYYCSNNFELEVW--TELELSKESLED--SPYDIIISNFIIPPIENKRLI 469 Query: 105 YTMNHPTAALMREIAA 120 Y+ N T +L+ + A Sbjct: 470 YSNNINTVSLIYLLNA 485
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 38.0 bits (88), Expect = 2e-05 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 88 MAVTPNLALMYHRNVKVIDIFIARILLEVVGNTASFFVLMITFHALGLVDYPEDILEVMF 147 M M + +++ DI + + + + + ALG + +++ Sbjct: 94 MEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLS----LLY 149 Query: 148 AWVMIIWFG---ASLGFIIGALSEKTELVEKLWHPVTYLMFPLSGAIFMVDWLSPAFQKI 204 A +I G ASLG ++ AL+ + V + LSGA+F VD L FQ Sbjct: 150 ALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTA 209 Query: 205 VLWLPMVHGVEMLREGYFG 223 +LP+ H ++++R G Sbjct: 210 ARFLPLSHSIDLIRPIMLG 228
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 135 bits (342), Expect = 3e-37 Identities = 81/382 (21%), Positives = 138/382 (36%), Gaps = 71/382 (18%) Query: 5 IGIDLGTTNSCVAIMEGNQVKVIENSEGARTTPSIIAYMDDNEVL-VGAPAKRQSVTNPK 63 + IDLGT N+ + + V + R V VG AK+ P Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD----RAGSPKSVAAVGHDAKQMLGRTPG 68 Query: 64 NTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIKADNGDAWVEAHGEKLAPPQVSAEVLRK- 122 N + A++ + + V D V+ ++L+ Sbjct: 69 N-IAAIRPM------KDGVIADF---------------------------FVTEKMLQHF 94 Query: 123 MKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 182 +K+ + P ++ VP +R+A +++ + AG +I EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 183 KAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDYII 242 +E V D+GGGT +V++I + V + +GG+ FD+ II+Y+ Sbjct: 155 VSE--ATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINYVR 203 Query: 243 GEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSS----QQTEINLPYITADASGPKHLN 298 + G + AE+ K E+ S+ + EI + P+ Sbjct: 204 RNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFT 250 Query: 299 LKVTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDD--VILVGGQTRMPKVQEKVKE 356 L + LEAL E L + SDI + ++L GG + + + E Sbjct: 251 LN-SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLME 309 Query: 357 FFGKEPRRDVNPDEAVAVGAAI 378 G +P VA G Sbjct: 310 ETGIPVVVAEDPLTCVARGGGK 331
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.002 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%) Query: 2 ENTQENPTDQTTEETGREAQAAEPAAQAAENAAPAAEAA--------LAEAQAKIAELQE 53 T E TE T + + A+ A + E A + K E Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 54 SFLRAKAETENVRRRAQ 70 +AK ETE + + Sbjct: 1108 KEEKAKVETEKTQEVPK 1124
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.035 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 25 LASLAACIAKRGFEVVFEADTAQAIGSAGYPALTP---AEIGARADVAVVLGGDGTMLGM 81 S+ + F ++ A Q G+A +PAL A + + G G+++ M Sbjct: 91 FGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAM 150 Query: 82 GRQLAPYKTPLIG---INHGRLGFITDIP 107 G + P IG ++ ++ IP Sbjct: 151 GEGVG----PAIGGMIAHYIHWSYLLLIP 175
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.008 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 61 CVALTGPSGAGKSTLLRCLYGNYLANRGTIAVRAGARAAEHVV-LTASEPHEVIALRRDV 119 V L G G GKSTL+ L G + + G + E + + A E E+ A RR Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRAD 657 Query: 120 IGYVSQFL 127 V F Sbjct: 658 AEAVKAFF 665
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.039 Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 14 IEIDDVIVGLLAI-RLNLPENADPRDAISRHLSEAGGP 50 + +DD IV + + R+ + + P++A + +S+ G Sbjct: 404 LLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGA 441
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.002 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 29 VVVVCGPSGSGKSTLIKTVNGLEPFQQGEILVNGQSVGDKKTNLSKLRSKVGM 81 VV+ G G GKSTLI T+ GL+ F +G K + ++ V Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHF-----DIGTGKDSYEQIAGIVAY 645
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.3 bits (65), Expect = 0.012 Identities = 14/38 (36%), Positives = 15/38 (39%) Query: 4 DPTPRPADSADSASQPGATPAPASSPAPRRDSPQDPQR 41 +P RP D P A P P R DSP P R Sbjct: 346 NPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDR 383 Score = 27.4 bits (60), Expect = 0.040 Identities = 12/24 (50%), Positives = 13/24 (54%) Query: 7 PRPADSADSASQPGATPAPASSPA 30 PRP + SA P A P P SPA Sbjct: 311 PRPDLTPGSAEAPNAQPLPEVSPA 334 Score = 27.4 bits (60), Expect = 0.049 Identities = 11/35 (31%), Positives = 14/35 (40%) Query: 5 PTPRPADSADSASQPGATPAPASSPAPRRDSPQDP 39 P +P A P PAP +P R + DP Sbjct: 323 PNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDP 357
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 3e-36 Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 8/249 (3%) Query: 26 GRAVLITGGATGIGASFVEHFARQGARVAFVDLDEKAGRALVARLADAAHEPVFVVCDLT 85 G+ ITG A GIG + A QGA +A VD + + +V+ L A D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 86 DIGALRGAIDAIRVRIGPIAVLVNNAANDVRHAVADVTPESFDASIAVNLRHQFFAAQAV 145 D A+ I +GPI +LVN A + ++ E ++A+ +VN F A+++V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 146 IDDMKRLGGGAIVNLGSIGWMLKNAGYPVYATAKAAVQGLTRALARELGPFGIRVNTLVP 205 M G+IV +GS + YA++KAA T+ L EL + IR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 206 GWVMTDKQRRLWLDDAGRAAIKAGQCIDAEL--------LPGDLARMALFLAADDSRLIT 257 G TD Q LW D+ G + G + P D+A LFL + + IT Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 258 AQDVVVDGG 266 ++ VDGG Sbjct: 248 MHNLCVDGG 256
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.040 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 18 RALD-GISFDVHAGQVHGLMGENGAGKSTLLKILGGEY 54 R ++ G FD L G G GKSTL+ L G Sbjct: 587 RVMEPGCKFDY----SVVLEGTGGIGKSTLINTLVGLD 620
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (340), Expect = 9e-41 Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 12/259 (4%) Query: 4 LAGKVAIVTGAGRGIGAAIARAFVREGAAVAIAELDAA---LAEESADAIARDTAGARVL 60 + GK+A +TGA +GIG A+AR +GA +A + + S A AR Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE----- 60 Query: 61 AVPTDVARAESVAAALARTERAFGPLDVLVNNAGVNVFGDPLALTDEDWRRCFAIDLDGV 120 A P DV + ++ AR ER GP+D+LVN AGV G +L+DE+W F+++ GV Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 121 WNGCRAALPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHGVLGLTRALGIEYAPRNV 180 +N R+ M++R GSIV + S A Y +K + T+ LG+E A N+ Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 181 RVNAIAPGYIETQLTHDWW---NAQPDPQAARRETLALQ-PMKRIGRPDEVAMTAVFLAS 236 R N ++PG ET + W N ET P+K++ +P ++A +FL S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 237 DEAPFINASCITIDGGRSV 255 +A I + +DGG ++ Sbjct: 241 GQAGHITMHNLCVDGGATL 259
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 36.3 bits (84), Expect = 1e-04 Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 10/129 (7%) Query: 132 GVVPIINENDTVVTDEIKFGDNDTLGALVANLIEGDTLVILTDQPGLFTADPRKDPGATL 191 G VP+I E+ + E D D G +A + D +ILTD G + Sbjct: 195 GGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLR 253 Query: 192 VAEASAGAPELEAMAGGAGSSIGRGGMLTKILAAKRAAHSGANTVIASGRERDVLVRLAA 251 + E AGS M K+LAA R G I + E+ V Sbjct: 254 EVKVEELRKYYEEGHFKAGS------MGPKVLAAIRFIEWGGERAIIAHLEK--AVEALE 305 Query: 252 GEAIGTQLI 260 G+ GTQ++ Sbjct: 306 GKT-GTQVL 313
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 29.1 bits (65), Expect = 0.035 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 22/100 (22%) Query: 249 PFDERVDPVAEARAIVGELRKYDESLYEKPRWLVLNKLDMVPED---ERRARVADFIERF 305 E+ D V E ++ L EK ++ + + E R + Sbjct: 170 TESEQWDTVIEG----------NDDLLEK----YMSGKSLEALELEQEESIRFHN----- 210 Query: 306 GWTGPVFEISALTGQGCESLVYAIHDYLVEHSDAHRAELA 345 PV+ SA G ++L+ I + + ++EL Sbjct: 211 CSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQSELC 250
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 26.8 bits (59), Expect = 0.017 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 24 NQQRQIFIQLQRAQSQEHQLQQDYAQLQYQQSA-------LSKTSRIEQLATSSLKMQ 74 NQ F+ +AQ Q+ Q QQ AQ Q++ L+ + +I QL +K+Q Sbjct: 328 NQIHLNFVMPPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKDLVKLQ 385
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 88.3 bits (219), Expect = 1e-21 Identities = 90/394 (22%), Positives = 139/394 (35%), Gaps = 71/394 (18%) Query: 1 MKKSLLALVALSAFAGAAHAQSSVTLYGIIDEGFNINTNAGGKHL-----YNLSSGVMQG 55 MKKSL+AL L+A AA A VTLYG I G + + + V G Sbjct: 1 MKKSLIALT-LAALPVAAMAD--VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 56 SRWGLRGTEDLGGGLKALFVLENGFDVNSGKLNQGGLEFGRQAYVGLSSGFGTVTLGRQY 115 S+ G +G EDLG GLKA++ +E + G RQ+++GL GFG + +GR Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGN----RQSFIGLKGGFGKLRVGRLN 113 Query: 116 DSVVDF--VGPLEA-GDQWGGYIAAHPGDLDNFNNAYRVNNAVKFTSANYGGFTFGGLYS 172 + D + P ++ D G A P + + V++ S + G + Y+ Sbjct: 114 SVLKDTGDINPWDSKSDYLGVNKIAEP---EARLIS------VRYDSPEFAGLSGSVQYA 164 Query: 173 FGGVAGDFSRNQTWSLGAGYTNGPLVLGVGYLNARTPSTAGGLFGNNTTSSTPAAVTTPV 232 AG ++++ G Y NG + G R + + Sbjct: 165 LNDNAG-RHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHR-------L 216 Query: 233 YAGYASAHTYQVIGAGGAYSFGAATVGITYSNIKFMNFASTVFPNQTATFNNAEINFKYQ 292 +GY + Y A A A + + + T + N + Sbjct: 217 VSGYDNDALY----ASVAVQQQDAKL-VEENYSHNSQTEVAA----TLAYRFG--NVTPR 265 Query: 293 LTPTLLAGAAYDYTQGSKIAGSSAAKYHQGSVGVDYFLSKRTDVYAIGVYQHASGNVIEA 352 ++ ++D T + Y Q VG +Y SKRT + E Sbjct: 266 VSYAHGFKGSFDATNYNND-------YDQVVVGAEYDFSKRTSALVSAGWLQ------EG 312 Query: 353 DGNTVGPATAAINGLTPSSNRNQFAARVGIRHKF 386 G S A VG+RHKF Sbjct: 313 KG---------------ESKFVSTAGGVGLRHKF 331
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 132 bits (334), Expect = 2e-36 Identities = 81/429 (18%), Positives = 159/429 (37%), Gaps = 53/429 (12%) Query: 28 RPVSFAVLASAAASMALGVI--LLFTFGTYTRRTTVDGVLTPDTGLVKVYAQQTGVVLKK 85 PVS A M VI +L G T +G LT ++ + +V + Sbjct: 51 TPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 86 NVVEGQHVTRGQVLYTVSTDLQSAAAGQTQAAL----IEQAQQRKTSLQQELDKTRRLQ- 140 V EG+ V +G VL ++ A +TQ++L +EQ + + S EL+K L+ Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 141 ----------------------------QDERDTLQSKIASLRTELAGIDDQIAAQRTRA 172 Q+++ + + R E + +I + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 173 SIAADAASRYAGLLAQDYISKDQAQQRQADLLDQRSKLNSLMRDRASTAQSLKEALNDLS 232 + ++ LL + I+K +++ ++ ++L + A + Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 233 GLSLKQQNQLSQIDRSVIDVDRTLIESEAKREF-----VVTAPETGT-ATAVIAEPGQTA 286 ++ +N++ R D L AK E V+ AP + + G Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 287 DTSHPLASIVPTGAHWQAYLFVPSAAVGFVHVGDRVLVRYQAYPYQKFGQYEASVVSIAR 346 T+ L IVP + V + +GF++VG +++ +A+PY ++G V +I Sbjct: 351 TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Query: 347 TALSAAELATSGGPAAQTASGTYYRITVALNSQNVMAYGRAQPLQAGMALQADVLQERRR 406 A+ G + + +++ + + PL +GMA+ A++ R Sbjct: 411 DAIE------------DQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRS 458 Query: 407 LYEWVLEPL 415 + ++L PL Sbjct: 459 VISYLLSPL 467
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.012 Identities = 27/188 (14%), Positives = 58/188 (30%), Gaps = 10/188 (5%) Query: 11 ASQPTPPTTEAFNKSLADADAVAKTGDQERAIGLYQQLAKSDPTREEPWSRIAQIQFQQG 70 Q P+ + N+ +A D A ++ +++E + Q Sbjct: 1002 NIQADVPSVPSNNEEIARVDEAPVP-PPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 71 HYGQAIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQDSSLAGDAKSDAQALAK 130 Q A+EA K + Q VA T+ + + + A+ + Sbjct: 1061 TTAQNREVAKEAKSNVKANTQT---NEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 131 QLRDTLGEAALFPPEQQATKPVVKKRRIVRRAKPVHEAPRAAESETAAAPATPPAAPAQP 190 + ++ + P+Q+ + + +A+P E + + A QP Sbjct: 1118 KTQEVPKVTSQVSPKQE------QSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 191 AATPAPAP 198 A + Sbjct: 1172 AKETSSNV 1179 Score = 28.1 bits (62), Expect = 0.032 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 32/191 (16%) Query: 11 ASQPTPPTTEAFNKSLADADAVAKTGDQERAIGLYQQLAKSDPTREEPWSRIAQIQFQQG 70 + T P N AD +V ++ I + P P + Sbjct: 994 TTNITTP-----NNIQADVPSVPSNNEE---IARVDEAPVPPPAPATPSETTETV----- 1040 Query: 71 HYGQAIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQDSSLAGDAKSDAQALAK 130 A + QE+ +K ++ A A +A E+ ++ ++ A+S ++ Sbjct: 1041 ----AENSKQESKTVEKNEQDATETTAQNR-EVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 131 QLRDTLGEAALFPPEQQATKPVVKKRRIVRRAKPVHEAPRAAESETAAAPATPPAAPAQP 190 Q E + T V K+ + + E P+ + +P + QP Sbjct: 1096 Q-----------TTETKETATVEKEEKAKVETEKTQEVPKVT---SQVSPKQEQSETVQP 1141 Query: 191 AATPAPAPAKA 201 A PA Sbjct: 1142 QAEPARENDPT 1152 Score = 27.7 bits (61), Expect = 0.039 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 22/130 (16%) Query: 75 AIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQDSSLAGDAKSDAQALAKQLRD 134 I A ++ + + V AT S ++A ++K +++ + K Sbjct: 1002 NIQADVPSVPSNNEEIARVDEAPVPPPAPATPS----ETTETVAENSKQESKTVEKN--- 1054 Query: 135 TLGEAALFPPEQQATKPVVKKRRIVRRAKP-VHEAPRAAESETAAAPATPPAAPAQPAAT 193 EQ AT+ + R + + AK V + E A + Q T Sbjct: 1055 ----------EQDATETTAQNREVAKEAKSNVKANTQTNE----VAQSGSETKETQTTET 1100 Query: 194 PAPAPAKAAG 203 A + Sbjct: 1101 KETATVEKEE 1110
>PF06580#Sensor histidine kinase Length = 349 Score = 46.0 bits (109), Expect = 3e-07 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 52/151 (34%) Query: 464 ELDKSLIERIIDPLT--HLVRNSLDHGIETVEARRAAGKDAVGQLVLSAAHHGGNIVIEV 521 +++ ++++ + P+ LV N + HGI G+++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 522 SDDGAGLNRERILAKAAKQGMQISENISDDEVWNLIFAPGFSTAEVVTDVSGRGVGMDVV 581 + G+ + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 582 KRNIQSMGG---HVEISSQAGRGTTTRIVLP 609 + +Q + G +++S + G +++P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 8e-18 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 4 TILAIDDSATMRTLLSATLGEAGYDVTVASDGEVGLDVALATRFDLVLTDHHMPRKNGLE 63 TIL DD A +RT+L+ L AGYDV + S+ A DLV+TD MP +N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LIVALRRQLGYEATPILVLTTENGDAFKDAARAAGATGWIEKPIDPDALIELVA 117 L+ +++ P+LV++ +N A GA ++ KP D LI ++ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 39.5 bits (92), Expect = 1e-05 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 182 FAMSSDAVEPYMRDILREIGKTLNDV---PNRIIVQGHTDAVPYAGGEKGYSNWELSADR 238 F + ++P + L ++ L+++ ++V G+TD + G Y N LS R Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI----GSDAY-NQGLSERR 277 Query: 239 ANASRRELIAGGMDEAKVLRV-LGLASTQNLNKADPLDPENRRISIIVLNRKSELAL 294 A + LI+ G+ K+ +G ++ N D + I + +R+ E+ + Sbjct: 278 AQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 98.6 bits (245), Expect = 8e-27 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 9/251 (3%) Query: 7 LAGGTYLVTGASSGIGRATAIAIAQLGGRLVLGGRDPARLADTLAALPGDGHASHAAALD 66 + G +TGA+ GIG A A +A G + +P +L +++L + + A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 67 DADAAA--DWVGALAETHGPLAGVFHAAGVELIRPARMTAQAQLEQVFGASLYAAFGIAR 124 D+AA + + GP+ + + AGV + + E F + F +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 125 AAAKKNVIADGGSVVYMSSVAGSTGQVGMTAYSAAKAGIEGLVRSLACELAPRRIRANAI 184 + +K + GS+V + S + M AY+++KA + L ELA IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 AAGAVKTEMHARL--TRGTPEDALAAYEASHLLG-----FGEPGDVAAAAIFLLSGASRW 237 + G+ +T+M L E + + G +P D+A A +FL+SG + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 238 ITGTSLVVDGG 248 IT +L VDGG Sbjct: 246 ITMHNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.003 Identities = 18/93 (19%), Positives = 28/93 (30%) Query: 48 QKSPEDQIDALEKALQQIRAKGNRPPPGFEAHLGMLYASVGKEQQAEQSFQAEKASFPES 107 + + I A ++ + R S E AE S Q K Sbjct: 996 NITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE 1055 Query: 108 SPFMDFLLKKKAAAPQAKPSAPAQPQTQTQAQQ 140 + + + A +AK + A QT AQ Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQS 1088
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 101 bits (254), Expect = 3e-25 Identities = 63/289 (21%), Positives = 118/289 (40%), Gaps = 36/289 (12%) Query: 190 AGDVPAMPVETSVQARGDD--LVIVGSHDEVALLRKVVPELDTVPSEVVVRGWVYEVANT 247 A V A+ ++A G L++ + D + L +V+ +LD +V+V + EV + Sbjct: 300 AKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDA 359 Query: 248 DS-----------------TNTAWSIAVRMLSGQLRVSSGDTSSDAS---------AVRF 281 D TN+ I+ + G SS + A F Sbjct: 360 DGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGF 419 Query: 282 TGPGVDAAISALNADSRFKVVSAPHVRIVSGERVRLNVGQQVPTQSSVSYQGSTGTPVQS 341 ++AL++ ++ +++ P + + NVGQ+VP + S S + Sbjct: 420 YQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG-SQTTSGDNIFNT 478 Query: 342 ITYQDAGLIFDVEPTVMR-EVIELKVREEISDF--VATKTGVDTSPTKNTRQLQTVTRLK 398 + + G+ V+P + + + L++ +E+S A+ T D T NTR + + Sbjct: 479 VERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVG 538 Query: 399 DGEVVVLGGLIQDRNATARSGYAWLPSF-LDG---RSSSKQRTEVLLVL 443 GE VV+GGL+ + L + G RS+SK+ ++ L+L Sbjct: 539 SGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLML 587
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 58.6 bits (141), Expect = 4e-11 Identities = 49/183 (26%), Positives = 66/183 (36%), Gaps = 13/183 (7%) Query: 480 QPVPQPVPVPLPQPVPHPAPEPAPSPVPQPVPVPVPEPVPGPVPVPVPSPVPEPIPQPIP 539 Q +P+P P P+ P P SP P P P PG P P P P P P Sbjct: 308 QVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDT 367 Query: 540 QPLPQPVPIPTPAPGTNPGTGRPSRDD------ICALHPEASACAPL---GSASDVAVNS 590 P P P G R R + +C P+ AC L A D+ + S Sbjct: 368 DGQPGTRPDSPAVPDRPNGRHRKERKEGEDGGLLCKFFPDILACDRLPEPNPAEDLNLPS 427 Query: 591 DAKRISLSPLSIGLTKGVCPEPKRVVVF----GGELSFSYEPLCEFALKLRPLVLLLGAL 646 + + I CP P V + +FS+E C A +LR ++L L Sbjct: 428 ETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAERLRYMLLALAWA 487 Query: 647 LAG 649 +A Sbjct: 488 VAA 490 Score = 45.1 bits (106), Expect = 6e-07 Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 408 GKDVLITPFVPPQPIPVP--VPKPAPTPAPRPASEAEPEPRPAPAPVPGAPPQPRPVPEP 465 G+D V Q IP P P A P +P E P PA P P P RP PEP Sbjct: 296 GRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEP 355 Query: 466 QPQPQPMPVPRPVPQPVPQPVPVPLP 491 P P P QP +P +P Sbjct: 356 DPDLNPDANPDTDGQPGTRPDSPAVP 381 Score = 41.7 bits (97), Expect = 9e-06 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 426 VPKPAPTPAPRPASEAEPEPRPAPAPVPGAPPQPRPVP--EPQPQPQPMPVPRPVPQPVP 483 +P+P TP A A+P P +PA P P P P P P+P P P P Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDG 369 Query: 484 QPVPVPLPQPVP 495 QP P VP Sbjct: 370 QPGTRPDSPAVP 381 Score = 30.9 bits (69), Expect = 0.018 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 14/89 (15%) Query: 376 QPISEPDIAEWAKENPGQVPTVGDLFTSPARKGKDVLITPFVPPQPIPVPVPKPAPTPAP 435 Q I PD+ + E P P ++P P P P P P P Sbjct: 308 QVIPRPDLTPGSAEAPNAQPLPE--------------VSPAENPANNPAPNENPGTRPNP 353 Query: 436 RPASEAEPEPRPAPAPVPGAPPQPRPVPE 464 P + P+ P PG P VP+ Sbjct: 354 EPDPDLNPDANPDTDGQPGTRPDSPAVPD 382
>PF09025#YopR Core Length = 143 Score = 25.0 bits (54), Expect = 0.045 Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 33 VLEQESSEGKQILVGTINLPAALKDSPTGDYLAEFALQQSM 73 +L E G+Q + L A++ +P G+YLA+ A ++ Sbjct: 80 MLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRELQ 120
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 27.9 bits (61), Expect = 0.050 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 60 LSLSAIAASEAFSFAYAWTCRRHRWPLALAAGLAAWAAAASALARLPATPPAATAVAFAA 119 +S+SA S FS YA+ P A ++ A A L P PP A A Sbjct: 7 ISVSAALISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLE-YPVRPPVPGAGGLNA 65 Query: 120 TCFGQSCLPRGATLAPRAPLSHADLAGRLAAGAALALAVTSLAGALG 166 + G + GAT + A AG +A G ++A+ L+ ALG Sbjct: 66 SAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVN-SVAIGPLSKALG 111
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 26.8 bits (59), Expect = 0.034 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%) Query: 5 ATIARPYAEALFRVAEGGDISAWSTLVQELAQVAQLPEVLSVASSPKVSRTQ--VAELLL 62 AT + A+A+F+ GGD+S +Q++ + +P L+V ++ RT+ + ELL Sbjct: 28 ATTTKSAADAVFQQLGGGDVSG---AMQDIDLIMDIPVKLTV----ELGRTRMTIKELLR 80 Query: 63 AALKSPLASGAQAKNFVQMLVDNHRIA 89 S +A A + +L++ + IA Sbjct: 81 LTQGSVVALDGLAGEPLDILINGYLIA 107
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 404 bits (1040), Expect = e-133 Identities = 216/691 (31%), Positives = 325/691 (47%), Gaps = 88/691 (12%) Query: 13 TALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPV 72 T L+ A ++ AA + + +F DI + + KT+I+DP V+G + + + + Sbjct: 13 TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 73 PEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVVTQV 131 E+Q + S L + GFA++ ++GVLKVV DAK VP AP GD+VVT+V Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGI-GDEVVTRV 131 Query: 132 FELRNESANNLLPVLRPLI--SPNNTITAYPANNTIVVTDYADNVRRIAQIIAGVDSAAG 189 L N +A +L P+LR L + ++ Y +N +++T A ++R+ I+ VD+A Sbjct: 132 VPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGD 191 Query: 190 SQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNAQRLA 249 V VPL A+A D+ +T+L + ++ V AD RTNA+L+ R Sbjct: 192 RSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR-Q 250 Query: 250 AAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSASSNDANAFN 309 + +QLD GN V+ L+ A+A L + L G+ Sbjct: 251 RIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGIS-------------------- 290 Query: 310 QGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPG 369 S + S + Sbjct: 291 ---------------------STMQSEKQAAKPVAALDKNI------------------- 310 Query: 370 GMIQADAASNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELQATTSANLGIQWQ 429 +I+A +N+LI+TA+ V +L VI QLD RR QV +EA++ E+Q NLGIQW Sbjct: 311 -IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA 369 Query: 430 VANNALYAGTNLVTGQTNLGNSIVNLTAGAVT--NPGGTLGSLG---SITNGLNIGWLHN 484 N +T TN G I AGA G SL S NG+ G Sbjct: 370 NKNAG-------MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG---- 418 Query: 485 MFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTA 544 F LL + S+ ++L+TP++VTLDN EA VGQ VP+ TGS + + Sbjct: 419 -FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGS----QTTSGD 473 Query: 545 NAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQ 604 N FNT +R+ VG+ L VKPQI EG + L++ E S+V +++++ G TF R++ Sbjct: 474 NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSV-ADAASSTSSDLGATFNTRTVN 532 Query: 605 STVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPV 664 + VL +GE +V+GGL+ + + KVPLLGDIP IG LFRS K K NLM+F+RP Sbjct: 533 NAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPT 592 Query: 665 IINDRETAQAVTSNRYDYIQGVTGAYKSDNN 695 +I DR+ + +S +Y + N Sbjct: 593 VIRDRDEYRQASSGQYTAFNDAQSKQRGKEN 623
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 383 bits (985), Expect = e-133 Identities = 174/406 (42%), Positives = 266/406 (65%), Gaps = 2/406 (0%) Query: 1 MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALG 60 M + ++A+DA G+ +G EADSAR AR LR +GL PL V+ Q+ + S L+L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R--KLSQREQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSL 118 R +LS + A+LTRQLA+L+ A +PL+EAL + +Q+E+ ++ +LMAA+R++V+ GHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVT 178 A+A+ P F +Y A+VAAGE +G L VL+RLADY E+R ++ +I A YP ++T Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYL 238 V+A +V+ LLS VVP+VV F KQ LP+ T V+M +SD VR + +L+ + A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VKATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGET 298 + L ++ R++F R LL PL G++ RG NT R+A TL IL A+ VP+L+A++ +G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNRAMRGNIEDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEG 358 +SN R + A VREG +L +AL FPP++ H+I SGE +G++ +ML+RAA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 ESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404 + RE + L EPLL+++M +VL IVLA++ PI++LN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 276 bits (706), Expect = 2e-93 Identities = 82/324 (25%), Positives = 159/324 (49%), Gaps = 10/324 (3%) Query: 5 EFMSQEEVDALLKGVTGEDDSADEPAEASG---IRPYNIATQERIVRGRMPGLEIINDRF 61 E +SQ+E+D LL ++ D S ++ S I Y+ ++ + +M L ++++ F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121 ARL + +R + V+ V Y EF R++P P+ L ++ + PL+G ++ DP+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVR 181 + F ++D LFGG G+ RD T E ++ ++ + + +W V L+ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239 E + QFA + P+E+V++ + G G ++ C+PY IEPI LSS ++ Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 240 EVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLD---ITDSITAKVD 296 +++ VL ++ + ++++VA++ + + IL LR GD++ L + D + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 297 GVPVMECGYGIFNGQYALRVQRMI 320 C G+ + A ++ I Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 134 bits (338), Expect = 3e-43 Identities = 78/126 (61%), Positives = 97/126 (76%), Gaps = 3/126 (2%) Query: 41 AMDD-WAAALAEQNQQPIETGATGAGVFRPLSKATASSTHNDIDLILDIPVKMTVELGRT 99 A+DD WA AL EQ ++ A VF+ L S DIDLI+DIPVK+TVELGRT Sbjct: 14 ALDDLWADALNEQKATTTKSAADA--VFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRT 71 Query: 100 KIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSER 159 ++ I+ LL+L QGSVV LDGLAGEP+D+L+NG LIAQGEVVVV DK+G+R+TDIITPSER Sbjct: 72 RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131 Query: 160 IRKLNR 165 +R+L+R Sbjct: 132 MRRLSR 137
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 297 bits (761), Expect = e-104 Identities = 154/242 (63%), Positives = 192/242 (79%), Gaps = 1/242 (0%) Query: 34 RWLPAILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 93 R L + L + A LP S P P GG ++SL VQT++ +T L+F+PA+LLMM Sbjct: 3 RLLSVAPVLLW-LITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMM 61 Query: 94 TSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTL 153 TSFTRIIIV LLR A+GT S PPNQVL+GLALFLT F+MSPV+D+ Y DAY+PFSE + Sbjct: 62 TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKI 121 Query: 154 QMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAPMQGPEDVPLSLLVPAFVTSELKT 213 M +A+++G P + FML+QTRE DL LFA+++ P+QGPE VP+ +L+PA+VTSELKT Sbjct: 122 SMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKT 181 Query: 214 GFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQ 273 FQIGFTIFIPFLIID+V+ASVLM++GMMMV PAT++LPFKLMLFVLVDGWQLL+GSLAQ Sbjct: 182 AFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQ 241 Query: 274 SF 275 SF Sbjct: 242 SF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 68.6 bits (168), Expect = 4e-19 Identities = 26/85 (30%), Positives = 46/85 (54%) Query: 4 ENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAATMV 63 ++++ ++A+Y+ L+L+ +VA +GL+V LFQ TQ+ E TL F KLL V + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLSTMIDYLRETLLRVATLG 88 + W ++ Y R+ + G Sbjct: 62 LLSGWYGEVLLSYGRQVIFLALAKG 86
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 161 bits (410), Expect = 5e-51 Identities = 117/250 (46%), Positives = 159/250 (63%), Gaps = 1/250 (0%) Query: 1 MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPP 60 M VT Q WL + WP +R+LAL++ AP+ RS P RVK+GLA + +AP+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 MPVATVFSAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSS 120 V VFS +W+ V Q LIG ALGFTMQ FAA+ AG+IIGL MGL FATF DP S Sbjct: 61 NDVP-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 GATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSADLLRAAGWQTLVAFGAAI 180 PV+ R ++ +A+L FL F+GHL + + LVD+F +P+ + L + + L G+ I Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 181 FEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF 240 F GL+LALP++ LL NLALG+LNR APQ+ IF +GFP+T+ VG+ L+ + P + PF Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 241 VGRLFDTGVD 250 LF + Sbjct: 240 CEHLFSEIFN 249
>PF06580#Sensor histidine kinase Length = 349 Score = 54.5 bits (131), Expect = 3e-10 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 22/128 (17%) Query: 334 RIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAHE----GGRVTVSARRDGDAVVLE 389 R+ +++ + + L+ LV+N +++ GG++ + +D V LE Sbjct: 239 RLQFENQINPAIM---DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 390 VVDDGPGIPAEARPHVFKRFYRVARDEEGTGLGLAIVEE-IAQSHGGAVSLATGPGNRGV 448 V + G +E TG GL V E + +G + V Sbjct: 296 VENTGSLALKN--------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 449 RMTVRLPA 456 V +P Sbjct: 342 NAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 3e-25 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61 +L+ +D+A + + L G+ V + + + A D ++ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARI-RALIRRQ 119 LL R+++ ++PVL+++A + + GA DY+ KPF+ EL+ I RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 61.4 bits (149), Expect = 1e-12 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 28/228 (12%) Query: 12 LKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSIPTYRSHANAKGDHVIGMGLGGEPW 71 +K+ +AL++A AA + V LYG I + T RS A+ G + G Sbjct: 1 MKKSLIALTLAALPVAA-----MADVTLYGTIKAGVETSRSVAH-NGAQAASVETGTGIV 54 Query: 72 FSGSRWGLKGAEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVGVENDTFGKLTA 131 GS+ G KG ED+G G K I+++E + ++A + +R +++G++ FGKL Sbjct: 55 DLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTD----SGWGNRQSFIGLKGG-FGKLRV 109 Query: 132 GFQNTIARDAAAIYGDPYGSAKLTTEEGGWTNANNFKQMIFYAAGATGTRYNNGLAWKKL 191 G N++ +D I +P+ S RY++ + Sbjct: 110 GRLNSVLKDTGDI--NPWDSKSDYLGVNKIAEPEARL---------ISVRYDS----PEF 154 Query: 192 FGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHA 239 G+ S YA +++ + +Y Y G F V ++ H Sbjct: 155 A--GLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHH 200
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 25.2 bits (55), Expect = 0.009 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Query: 10 WRDAARMRQDSHGPVRDRDA----PAH-EPSRPPPTRRA 43 W + ++R+ PVR++D PAH E P +RR Sbjct: 19 WSETWKIRKQLDTPVREKDENEFLPAHLELIETPVSRRP 57
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 72.1 bits (177), Expect = 3e-16 Identities = 80/356 (22%), Positives = 118/356 (33%), Gaps = 75/356 (21%) Query: 1 MKK--FAVAAAGLAVATGAHASDGSVTLFGLIDAGVSYVSNEGGKRNVYFDDGIAVPNLW 58 MKK A+ A L VA A VTL+G I AGV + + Sbjct: 1 MKKSLIALTLAALPVAAMA-----DVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55 Query: 59 -----GLRGTEDLGGGAKAIFELTSQYALGNGAALPTPGSIFSRTALVGLWSERLGSMTL 113 G +G EDLG G KAI+++ + T +R + +GL G + + Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVEQ-----KASIAGTDSGWGNRQSFIGLKGG-FGKLRV 109 Query: 114 GQQYDFMTDSLTFGSFDGAFRYGGLYNFRQGPFSKLGIPDNPTGSFDFDRLAGSSRVPNS 173 G+ + D+ +D Y G+ + P+ S Sbjct: 110 GRLNSVLKDTGDINPWDSKSDYLGVNKIAE--------PEA---------------RLIS 146 Query: 174 VKYTSANLNGLVFGLMYGFGNQAGGGLAANSTVSAGLKYETGSFAL--GAAYVEVKYPQM 231 V+Y S GL + Y + AG + + AG Y+ G F + G AY Q Sbjct: 147 VRYDSPEFAGLSGSVQYALNDNAGRH--NSESYHAGFNYKNGGFFVQYGGAYKRHHQVQE 204 Query: 232 NNGHDGLRNWGLGARYALSAFDLNL-LYTNTRNT--LTGAAIDVIQAGVRYVGAPWTIGA 288 N + + L + Y L + ++ + Q V A Sbjct: 205 NVNIEKYQIHRLVSGY--DNDALYASVAVQQQDAKLVEENYSHNSQTEV---------AA 253 Query: 289 NYEYMKGNAQLDRNYAH----------------QVTAAAQYALSKRTSAYVETVYQ 328 Y GN +YAH QV A+Y SKRTSA V + Sbjct: 254 TLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWL 309
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 45.2 bits (107), Expect = 2e-07 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 34/178 (19%) Query: 145 RALDAGARTLMFPGVETADEAAHAVRLTRFQAPDAPDGLRGVAGIVRAAAYGMRRDYVQT 204 RA G +MFP + T +E LR I++ + + V Sbjct: 380 RASTYGNLKVMFPMIATLEE------------------LRQAKAIMQEEKDKLLSEGVDV 421 Query: 205 ANAQIATIVQIESARGVDEAERIAATPGVDCVFVGPADL----------SASLGHLGDTK 254 ++ I + +E A A VD +G DL + + +L Sbjct: 422 SD-SIEVGIMVEIPSTAVAANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPY 478 Query: 255 HPDVAAALEHVLAAGRRAGVPVGI---FAADTAGARQSLEAGFRVVALSADVVWLLRA 309 HP + ++ V+ A G VG+ A D L G ++SA + R+ Sbjct: 479 HPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARS 536
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.014 Identities = 19/69 (27%), Positives = 26/69 (37%) Query: 681 SGADGASGASGAGGEPTEHANAGGNPAGGGIAGGAAGTANNGSGAAAPGGMPGANGAATG 740 +G GAS G +E+ GG G GG +G N G + GG + Sbjct: 25 TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84 Query: 741 APPASRRLP 749 A P + P Sbjct: 85 AAPVAFGFP 93 Score = 30.8 bits (69), Expect = 0.027 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Query: 677 PASASGADGASGASGAGGEPTEHANAGGNPAGGGIAGGAAGTANNGSGAAAPGGMPGANG 736 P GAS SG E G+ G G NG+ G G N Sbjct: 24 PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT--GGNL 81 Query: 737 AATGAPPA 744 +A AP A Sbjct: 82 SAVAAPVA 89
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.5 bits (63), Expect = 0.046 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 293 KAAKGKKATKGADKSAKAADKGADKDKGAKPAAAPPVPARSRPAGPAQPAAPLKPATAPS 352 K + +KA A A+A A K+K AK A + + P A P Sbjct: 424 KLTEKEKAELQAKLEAEAK---ALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPG 480 Query: 353 PGAP 356 G Sbjct: 481 KGQA 484
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 504 bits (1300), Expect = 0.0 Identities = 247/348 (70%), Positives = 294/348 (84%), Gaps = 2/348 (0%) Query: 1 MFGFLRSYFSNDLAIDLGTANTLIYMRGKGIVLDEPSVVSIRQEGGPNGKKTIQAVGKEA 60 M R FSNDL+IDLGTANTLIY++G+GIVL+EPSVV+IRQ+ K++ AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRA-GSPKSVAAVGHDA 59 Query: 61 KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMIKQFIKTAHESRMFSPSPRIIICVPCGST 120 KQMLG+ PGNI AIRPMKDGVIADF VTE+M++ FIK H + PSPR+++CVP G+T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 QVERRAIKEAAHGAGASQVYLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVGVISLG 180 QVERRAI+E+A GAGA +V+LIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEV VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GIVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR 240 G+VY SVR+GGD+FDEAI+NY+RRNYG LIGE TAE IK EIGSA+PG EV+E+EV+GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 NLSEGIPRSFTISSNEILEALTDPLNQIVSSVKIALEQTPPELGADIAERGMMLTGGGAL 300 NL+EG+PR FT++SNEILEAL +PL IVS+V +ALEQ PPEL +DI+ERGM+LTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 LRDLDRLLAEETGLPVLVAEDPLTCVVRGSGMALERMDKL-GSIFSYE 347 LR+LDRLL EETG+PV+VAEDPLTCV RG G ALE +D G +FS E Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.8 bits (69), Expect = 0.013 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 395 SNKIAKEIFVTIWDEKAADEGAADRIIEAKGLK-QISDTGALEAIIDEVLAANAKSVEEF 453 +N EIF I E D A KG+K ++SD LE + ++ L KS +EF Sbjct: 648 ANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDK--LENV-NKNLKDFDKSFDEF 704 Query: 454 RAGKDKAFNALVGQAMKATKGKANPQQVN 482 + GK+K F+ + +KA KG +N Sbjct: 705 KNGKNKDFSK-AEETLKALKGSVKDLGIN 732
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 1e-12 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 15/183 (8%) Query: 24 ASRTRPKPGERRVHILQTLASMLEAPKSEKITTAALAARLDVSEAALYRHFSSKAQMFEG 83 A +T+ + E R HIL + + +A V+ A+Y HF K+ +F Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 84 LIEFIEETFFGLVNQIAANEPNGVLQA-RSIALMLLNFSAKNPGMTRVLTGEALVGEHER 142 + E E L + A P L R I + +L + ++ + H+ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLME----IIFHKC 117 Query: 143 LAERVNQMLERVEASIKQCLR---VALLEAQAHAAGGAPPPVPLPDDYDPALRASLVISY 199 ++++ + ++ L+ A P + A ++ Y Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQTLKH-CIEAKMLPADL------MTRRAAIIMRGY 170 Query: 200 VLG 202 + G Sbjct: 171 ISG 173
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.7 bits (103), Expect = 5e-07 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 232 IPVISPIGFGEDGLSYNINADLVAGKLATVLNAEKLVMMTNIPGVMDKEG----NLLTDL 287 +PVI G G+ I+ DL KLA +NA+ +++T++ G G L ++ Sbjct: 197 VPVILEDG-EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREV 255 Query: 288 SAREIDALFEDGT-ISGGMLPKISSALDAAKSGVKSVHI 325 E+ +E+G +G M PK+ +A+ + G + I Sbjct: 256 KVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII 294 Score = 36.7 bits (85), Expect = 9e-05 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Query: 83 GKTVVIKYGGNAMTEERLKQGF----------ARDVILLKLVGINPVIVHGGGPQIDQAL 132 GK VVI GGNA+ + K + AR + + G VI HG GPQ+ L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 9e-23 Identities = 30/127 (23%), Positives = 60/127 (47%) Query: 1 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGND 60 M+ LV DD+ L + L R GY VR N + A + + D+ + ++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 120 + L+ + +PD +LV++ + TA++A + GA +YL KP ++ ++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 EVQAEEA 127 E + + Sbjct: 121 EPKRRPS 127 Score = 45.2 bits (107), Expect = 4e-08 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 75 DARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVL 134 I+ + I + L+ VE + + + L Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGL---YDR 431 Query: 135 SVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAK 175 + +E+ I L N A L ++R TL++K+ + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.016 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%) Query: 17 IIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGKTEIAR---RLAKL 73 ++G++ A + + ++ + T +++ G +G GK +AR K Sbjct: 139 LVGRSAAMQEI------YRVLARLMQ------TDLTLMITGESGTGKELVARALHDYGKR 186 Query: 74 ADAPFIKI 81 + PF+ I Sbjct: 187 RNGPFVAI 194
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.0 bits (64), Expect = 0.018 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 1 MQRIMSAEPIVTLSVARTLSAAIGAAFRRSDRASARRDSRGRRACASARRASTRRRPAAR 60 +Q M+ +T + A +AA A ++ + R+ R A+ R A+T PA Sbjct: 200 LQIRMNT---LTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANG 256 Query: 61 CAPSAGLGRALARQAAPGASLSRSVASA 88 + GR L + A ASL+++++ A Sbjct: 257 SVVATAAGRGLIQVAQGAASLAQAISDA 284
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 57.8 bits (139), Expect = 3e-12 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 13/186 (6%) Query: 7 VVLVTGANRGLGLAFVEGLKAAGAK------------KIYAAARDPARVTTPGVQPVRLD 54 + +TGA +G+G A L + GA K+ ++ + AR VR Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 55 VTRAQDIAAAARELRDVNLLVNNAGIFRMGSLLAEADGGGLQAQLDTNFFGPLAMARAFA 114 + A RE+ +++LVN AG+ R G L+ +A N G +R+ + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 115 PVLRENGGGAIVNVLSVLSWLGLPNTGAYGISKAAAWAATNAIRNELREQRTRVLALHSA 174 + + G+IV V S + + + AY SKAAA T + EL E R + Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 175 YIDTDM 180 +TDM Sbjct: 189 STETDM 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.2 bits (179), Expect = 2e-17 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 9 VFITGASSGLGLALAAEYARHGATLGLVARRADALAEFAP------RFPKASVSIYPADV 62 FITGA+ G+G A+A A GA + V + L + R +A +PADV Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA----FPADV 66 Query: 63 RDADALALAASRFVAAHGCPDVVIANAGISKGAITGEGDLAAFREIMDVNYYGMIATFEP 122 RD+ A+ +R G D+++ AG+ + + + VN G+ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 123 FIAPMTAARRGTLVGIASVAGVRGLPGSGAYSASKAAAIKYLEALRVELRPAQVAVVTIA 182 M R G++V + S AY++SKAAA+ + + L +EL + ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 183 PGYIRTPM 190 PG T M Sbjct: 187 PGSTETDM 194
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 8e-04 Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 6/173 (3%) Query: 62 ASQPQQFDPNRALQGKTPGQPVTPQAAQPAPPNTAPGQAANPSQPPLLPEPQIVEVPSSN 121 A ++ DP ++ T QPA ++ + + +VE P + Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 122 NNGNGSPSASNNAAD-----NGVAVAPKPAEPAPPPAKKPQAAANGSSAPHVANNNAQAS 176 P+ ++ +++ + +V P P + N NA S Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLS 1262 Query: 177 AAATPPKAAQAPKGASSATTTAAKPTSGADANTGYFLQVGAYKTEADAEQQRA 229 A + G + + + + ++ + + Q R Sbjct: 1263 DARAKAQFVALNVGKAVSQHISQLEMNNEGQYN-VWVSNTSMNKNYSSSQYRR 1314
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 78.5 bits (193), Expect = 4e-18 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 40/207 (19%) Query: 81 QRRAAPQLPIDPDDP-----FYQFFRHFYGQIPGMGGGRQPQPDDQPSTSLGSGFIISAD 135 ++R + + +D I Q + T + SG ++ Sbjct: 62 EQREHANVILPNNDRHQITDTTNGHYAPVTYI---------QVEAPTGTFIASGVVV-GK 111 Query: 136 GYILTNAHVIDGANVVTVKLTDKR-----------EYKA-KVVGADKQSDVAVLKIDA-- 181 +LTN HV+D + L + A ++ + D+A++K Sbjct: 112 DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNE 171 Query: 182 ------SGLPIVKIGDPAQSKVGQWVVAIGSPYGFDNTVTSGIISAKSRALPDENYTPFI 235 + + + A+++V Q + G P +K + + + Sbjct: 172 QNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKITYLKGE--AM 226 Query: 236 QTDVPVNPGNSGGPLFNLNGEVIGINS 262 Q D+ GNSG P+FN EVIGI+ Sbjct: 227 QYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 126 bits (317), Expect = 2e-38 Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 1/209 (0%) Query: 1 MARRTKEEALATRDRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFASKSELFD 60 MAR+TK+EA TR ILD A +F ++GVS TSL +IA+ AGVTRGAIYWHF KS+LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMFDRVLLPIDELKAGT-GEPHADPLGRIREILIWCLLGAARDPQLRRVFSILFMKCEYV 119 +++ I EL+ + DPL +REILI L + + R + I+F KCE+V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 ADMGPLLQRNREGMRDALRNIEADLAQGVANGQLPADLDTWRATLMLHTLVSGFVRDMLM 179 +M + Q R ++ IE L + LPADL T RA +++ +SG + + L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 180 LPGEIDAERHAEKLVDGCFDMLRTSPAMR 208 P D ++ A V +M P +R Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 4e-06 Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 75/266 (28%) Query: 92 KIDPAPYIAQLNSAKATLAKAQANLATQNALVARYKVLVAANAVSKQQYDDAVAAQGQAA 151 +++ A+ + A + + + + + + + L+ A++K + +A Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 152 ADVGAGKAAV-------------------------------------------ETAQINL 168 ++ K+ + + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 169 GYTDVVSPITGRV-GISQVTPGAYVQASQATLMSTVQQLDPVYVDLTQSSLDGLKLRQDI 227 + + +P++ +V + T G V ++ TLM V + D + V + D + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFINVG- 383 Query: 228 QSGRIK-------TEGPGAAKVTLILEDGKPYPERGKLQFSDVTVDQTTGSVT--IRAI- 277 Q+ IK G KV I D DQ G V I +I Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNI--------------NLDAIEDQRLGLVFNVIISIE 429 Query: 278 -----FPNKQRVLLPGMFVRARIEEG 298 NK L GM V A I+ G Sbjct: 430 ENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 30.6 bits (69), Expect = 0.011 Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 20/122 (16%) Query: 1 MRVERVPYRLITVATAAVFLAACGKKESAPPPQTPEVGVVTVQPQPVPVVSELPGRTSAY 60 R V Y ++ A L+ G+ E G +T + + Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATAN----GKLTHSGRSKEIKPIENSIVKEI 110 Query: 61 LVAQVRARVDGIVLRREFTEGSDVKAGQRLYKIDPAPYIAQLNSAKATLAKAQANLATQN 120 +V EG V+ G L K+ A +++L +A+ Sbjct: 111 IVK----------------EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 AL 122 L Sbjct: 155 IL 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1272 bits (3293), Expect = 0.0 Identities = 674/1035 (65%), Positives = 822/1035 (79%), Gaps = 2/1035 (0%) Query: 1 MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPIAQYPTIAPPSIQITANYPGASAKTVEDT 60 MA FFI RPIFAWV+AIILM+AG AI LP+AQYPTIAPP++ ++ANYPGA A+TV+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQNKLSLATPILPQ 120 VTQVIEQ M+G+DN +YMSSTSD +G+ TIT+TF GT+PDIAQVQVQNKL LATP+LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 VVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRINGVGTVTLFGS 180 VQQ G+SV KSSSS+L+V F S++ + D+++YVAS+VKD +SR+NGVG V LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGTVLQATITEATLL 240 QYAMRIWLD L Y LTPVDV + + QN QIA GQLGGTPA+PG L A+I T Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANAL 300 + PE+FG + L+VN DGS VRLKDVA++ LGGE YN + NG+P A LGI+LAT ANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQ 360 TAKA++AK+ E+ +FP G+ V YPYDTTPFV+LSI EVVKTL E I+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENVERVM 420 N+RAT+IPTIAVPVVLLGTFAI++ G+SIN L+MFG+VLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLPPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVL 480 E+ LPPKEAT K+M QI GALVG+A+VLSAVF+P+AF GGS GAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNSSRDKYHVGVHHVIKRSGRW 540 SVLVALILTPALCAT+LKP+ HHE K GFFGWFN TF+ S + Y V ++ +GR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LIIYLAVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTARTLANISDYLLTQ 600 L+IY ++ + +LF+RLP SFLP+EDQG+ ++Q P+G+TQE T + L ++DY L Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGRMFGRYAGYKDA 660 EK VES FTVNGFSF+G+ QN+G+ FV LK + +R + +A+I R +D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 LVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKDP-TLRGVRPNGL 719 VIPFN P+I ELGTA GFDFEL D AGLGHDAL ARNQLLGMAA+ P +L VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 NDTPQYKVDIDREKANALGVTADAIDQTFSIAWASKYVNNFLDTDGRIKKVYVQSDAPFR 779 DT Q+K+++D+EKA ALGV+ I+QT S A YVN+F+D GR+KK+YVQ+DA FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFR 779 Query: 780 MTPEDMNIWYVRNGSGGMVPFSAFATGHWTYGSPKLERYNGISAMEIQGQAAPGKSTGQA 839 M PED++ YVR+ +G MVPFSAF T HW YGSP+LERYNG+ +MEIQG+AAPG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPILYAISILVVFLCLAALYESWSIPFS 899 M ME LA KLP GIGY WTG+S+QE SG+QAP L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQQTEKMGP 959 V++VVPLG++G LLAATL +NDV+F VGLLTT+GLSAKNAILIVEFA++L + E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 960 IEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMITATFLAIF 1019 +EA L A R+RLRPILMTSLAFILGV+PLAISNGAGS +Q+A+G GV+GGM++AT LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1020 MIPMFFVKVRAVFSG 1034 +P+FFV +R F G Sbjct: 1020 FVPVFFVVIRRCFKG 1034
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.017 Identities = 14/35 (40%), Positives = 17/35 (48%) Query: 32 VVFVGPSGCGKSTLMRMIAGLEEISGGELLIDGAK 66 VV G G GKSTL+ + GL+ S I K Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.5 bits (152), Expect = 2e-12 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 391 RVLVVDDQEMNRIVLRYQLDALGHHARLCASGDEALRALGTAAYDVVLTDCRMPGMDGIA 450 +LV DD R VL L G+ R+ ++ R + D+V+TD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 451 LTAAIRAH-PDARVRATPIVGVTALVSDAEHARCVDAGMTLCIGKP----TTLDALERAL 505 L I+ PD P++ ++A + + + G + KP + + RAL Sbjct: 65 LLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 506 VE 507 E Sbjct: 120 AE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 4e-11 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 22/143 (15%) Query: 5 VLIADDHPLVLLGVRHMLAGMG-DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPA 63 +L+ADD + + L+ G DV I A L +AA D+V+TD MP+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVMPD--- 59 Query: 64 ADGLAMLTAIRDGYPSVRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDE--------- 114 + +L I+ P + V+V++ + + + GA L K DL E Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 115 ------LPRALAAVYQGRPFVGT 131 + G P VG Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGR 142
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 102 bits (256), Expect = 2e-25 Identities = 71/331 (21%), Positives = 140/331 (42%), Gaps = 20/331 (6%) Query: 41 AFMEVLDTTIVNVALPHIAGTMSASYDEATWTLTSYLVANGIVLPISGFLGRLLGRKRYF 100 +F VL+ ++NV+LP IA + W T++++ I + G L LG KR Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 101 VLCIVAFTICSFLCGIATDLGQLIVF-RVLQGLFGGGLQPNQQSIILDTF-PPEQRNRAF 158 + I+ S + + L++ R +QG G P +++ + P E R +AF Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIPKENRGKAF 141 Query: 159 SISAVAIVVAPVLGPTLGGWITDNFSWRWVFLLNVPIGVLTSLAVIQLVEDPPWKRGRAR 218 + + + +GP +GG I W +LL +P+ +T + V L++ K R + Sbjct: 142 GLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM--ITIITVPFLMKLLK-KEVRIK 196 Query: 219 GLSIDYIGITLIAIGLGCLQVMLDRGEDEDWFASTFIRTFAVLTVAGLVGATFWLLYAKK 278 G D GI L+++G+ + F +++ +F +++V + + Sbjct: 197 G-HFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 279 PVVDLSCLKDRNFALGCVTIATFAVVLYGSAVLVPQLAQQRLGYTAMLAG-LVLSPGALL 337 P VD K+ F +G + + G +VP + + + G +++ PG + Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 338 ITLEIPIVSKLMPYVQTRFLVCFGFLLLAAS 368 + + I L+ +++ G L+ S Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 101 bits (253), Expect = 1e-25 Identities = 63/414 (15%), Positives = 134/414 (32%), Gaps = 91/414 (21%) Query: 51 KRPGKKPLVVLAIIVVLLLVGAFVW-WFATRNQVSTDDA--YTDGNAITIAPKVSGYVVA 107 + P + ++A ++ LV AF+ V+T + G + I P + V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 108 LAIDDNAYVHRGDLLLVIDQRDYQAQVDAARAQLGLAQAQLDAAQVQLDIA------HVQ 161 + + + V +GD+LL + +A ++ L A+ + Q+ ++ Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 162 FPAQYRQAQA---QIEAAQASFRQALAAYERQHAVDARATSQQAIDVADAQRLTADANVA 218 P + ++ + ++ + ++ Q + + +D A+RLT A + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ-----KYQKELNLDKKRAERLTVLARIN 224 Query: 219 TARAQA----------------------------RTASLVPQQIRQAQTAVEQRRQQVLQ 250 + ++R ++ +EQ ++L Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 251 AQA-----------------------------QLEAAQLALSYCEVRAPSDGWITRRNVQ 281 A+ +L + +RAP + + V Sbjct: 285 AKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 282 -LGSFLQAGAALFAIVTPQ---LWVTANFKESQLERMRAGDRVSVSVDAYP---NLELHG 334 G + L IV P+ L VTA + + + G + V+A+P L G Sbjct: 345 TEGGVVTTAETLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVG 403 Query: 335 HVDSIQLGSGSRFSAFPPENATGNFVKIVQRVPVKIAIDGGLPRDPPLGIGLSV 388 V +I L + + G ++ + G ++ PL G++V Sbjct: 404 KVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGN--KNIPLSSGMAV 448
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.1 bits (67), Expect = 0.013 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 214 LMNQLKLAPAVRAEIRNDATRIAAAARARQRA-LARPGAPGAAASAGATLAASAAGSNGG 272 MN L A A + R AAA A+++A AA A T A A GS Sbjct: 203 RMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQ--AAIRAANTYAMPANGSVVA 260 Query: 273 AAAGKGAVAGAGASAPGAAATAAAAA 298 AAG+G + A +A A A + A A Sbjct: 261 TAAGRGLIQVAQGAASLAQAISDAIA 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 297 bits (763), Expect = 3e-98 Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 53/475 (11%) Query: 19 ADIVDRVARCMSSFDVEVIRADN-EELSAERTAMRPSLAIISVSMIE-SGAAFLRTWQAE 76 A I + + +S +V N L A L + V M + + L + Sbjct: 13 AAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKA 72 Query: 77 -IGMPVVWVGA--------------ARDHDPSLYPPEYSHILPLDFTCAELRGMISKLAV 121 +PV+ + A A D+ P P + + ++ + +++ Sbjct: 73 RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK--PFDLTELIGIIGRA------LAEPKR 124 Query: 122 QLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNVLLHGETGVGKERIAQLLHEKH 181 + + + LV S MQ + + + D +++ GE+G GKE +A+ LH+ + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD-Y 183 Query: 182 SRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDL 241 + G FV +N AIP L ES FGH KG+FTGA G FEQA GGTLFLDE+GD+ Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 242 PLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVI 301 P+ Q +LLRVL+ G +G P++ D R+VAA+NK L Q + GLFR DLYYRL V+ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 302 ELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELRN 361 L +P L +R D L + FV E + E + +PGNVREL N Sbjct: 304 PLRLPPLRDR-AEDIPDLVRHFVQQAEKEGL--DVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 362 LAERVGV------------------------TVRQTGGWDTARLQRLIAHARSAAQPAPA 397 L R+ + + + + + + Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 398 ESAPDVFVDRSKWDMTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKYQI 452 ++ P + E ++AAL A + A LG++R L +K+R+ + Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.7 bits (61), Expect = 0.044 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 9/108 (8%) Query: 113 LFQQKAFWRVIRTASEARAEAVYRDFAKQSETLAVNELQAAKLESQKALTDRQIAVA--- 169 ++A V + + T K E K T++ V Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 170 ------QERASRLQADLSIAREQRAAVATRQKDKLDETVALREQKSER 211 QE++ +Q ARE V ++ T A EQ ++ Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174
>cloacin#Cloacin signature. Length = 551 Score = 28.5 bits (63), Expect = 0.028 Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 7/85 (8%) Query: 76 GRGPRAGGAHGGGGRPGGREGGGHGPYGSHG----GSREPRGDGGGYGAREPRGDGGYGS 131 GRG G G GG G G G S G P G G G G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG---IHWGGGSGH 62 Query: 132 RESRGDGGYGSREPRGDGGYGSREP 156 G+G G G P Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 32.1 bits (73), Expect = 8e-04 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 18/148 (12%) Query: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAA---- 75 L+ +W L +L DL L + L+ L G A +GA A Sbjct: 138 LLLTWVLVALTFIDLDKMLLP--DQLTLPLLWGGLLFNLLGGFVSLGD-AVIGAMAGYLV 194 Query: 76 ----FALGAAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGR 131 + + + GD KL A + W G V + G +G I Sbjct: 195 LWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRN 254 Query: 132 APRVLAWFAPARGVPYGVALAAGGLLAV 159 ++ +P+G LA G +A+ Sbjct: 255 H-------HQSKPIPFGPYLAIAGWIAL 275
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 144 bits (364), Expect = 3e-39 Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 16/283 (5%) Query: 170 VVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA------- 222 +V + E ++ +L + RP QV + I EV LGI W+ A Sbjct: 322 IVTAAPDVMNDLERVIAQLDIRRP-QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTN 380 Query: 223 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDG--VLDALDQEGLITM 280 SG + G ++ S A S G Y + +L AL + Sbjct: 381 SGLPISTAIAGANQYNKDGTVSSSLAS-ALSSFNGIAAGFYQGNWAMLLTALSSSTKNDI 439 Query: 281 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGA----ITIQFKPYGVSLDFTPTVLADNR 336 LA P++ + A+F G E P+ TT T++ K G+ L P + + Sbjct: 440 LATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDS 499 Query: 337 ISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLA 396 + L++ EVS + S T+ + R V+ V + SG++ +GGLL SD Sbjct: 500 VLLEIEQEVSSVADAASSTSSDLGA-TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTAD 558 Query: 397 ELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGE 439 ++P L +PV+G LF S + K +++ + P +++ + Sbjct: 559 KVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYR 601
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 20/165 (12%) Query: 22 GARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSGA 81 GA ++ DAA V+ ++ + + ++ DV Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIA--AGDGDLVVTDVV-- 56 Query: 82 AMP----LSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIGVRDYLVKPL----TVEL 133 MP L R+ P + V+V+ +N G DYL KP + + Sbjct: 57 -MPDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 134 VHRALSAADPNAAARAGKAIGFVGARGGVGVTSIAVALARHLADR 178 + RAL+ + + + G S A+ + R Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVG----RSAAMQEIYRVLAR 155
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.032 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 302 IVISGGTGSGKTTLLNAL---SHFIDSHERIVTIEDAAELQLQQPHVVSL 348 +V+ G G GK+TL+N L F D+H I T +D+ E Q+ L Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYE-QIAGIVAYEL 647
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.7 bits (69), Expect = 0.004 Identities = 20/83 (24%), Positives = 32/83 (38%) Query: 38 SVAESALAAGDAELAATLFERALKADPRSLPAQVGLGDAMYQTGELARAGVLYAQAAAAA 97 S+A + +G E A +F+ D +GLG G+ A Y+ A Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 98 PDDPRAQLGLARVALRERHLDDA 120 +PR A L++ L +A Sbjct: 101 IKEPRFPFHAAECLLQKGELAEA 123
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.8 bits (66), Expect = 0.017 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%) Query: 40 RVAAARNELQNAADAAALAGAASLEAGAGAPAWAAAASAAAAALSLNASDGAALSSGDVQ 99 A A+ + + A A AA+ A PA + + AA + + GAA + + Sbjct: 226 AAAEAKRKAEEQARQQAAIRAANTYA---MPANGSVVATAAGRGLIQVAQGAASLAQAIS 282 Query: 100 TGYWNVTGVPAGLEPTTLAPGEYDVPAVQATVTRARNQNGGPLSLLMGGLLGLVGTPAAA 159 V G P+ +A G + T + ++Q + +G +G P + Sbjct: 283 DAI-AVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSV 341 Query: 160 TAVAVAGAPATV 171 AVA A TV Sbjct: 342 NLNAVAKASGTV 353
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 117 bits (295), Expect = 5e-35 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 4/210 (1%) Query: 1 MARKTREESLNTKNRILDAAELVLLEKGVGQTAMADIAEAAGMSRGAVYGHFNGKIEVCV 60 MARKT++E+ T+ ILD A + ++GV T++ +IA+AAG++RGA+Y HF K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AVCDRAFSRAVEGFDLSDERPA---LATLRLAASHYLHQCGEPGSMQRVLEILYMKCEQS 117 + + + S E + L+ LR H L + ++EI++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 EENAPLMRRRALYELQTLRIAKALLRRAVAAGELDASLDVHLAGVYLLSLLEGIFGSMIW 177 E A + + + L++ + L+ + A L A L A + + + G+ + ++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 178 TTRLRGDRWRDAEAMLDAGVDTLRASPALR 207 + D ++A + ++ P LR Sbjct: 181 APQSF-DLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 5/133 (3%) Query: 67 EVRARVAGIVTARTYEEGQEVKRGAVLFRIDPAPFKAARDAAAGALEKARAAHLAALDKR 126 E++ IV +EG+ V++G VL ++ +A +L +AR Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 127 RRYDELVRDRAVSERDHTEALADERQAKAAVASARAELA-----RAQLQLDYATVTAPID 181 R + + E + + + + + + Q +L+ A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 182 GRARRALVTEGAL 194 R E Sbjct: 218 TVLARINRYENLS 230 Score = 35.2 bits (81), Expect = 4e-04 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 10/100 (10%) Query: 102 KAARDAAAGALEKARAAHLAALDKRRRYDELVRDRAVSERDHTEALADERQAKAAVASAR 161 LE+ + L+A ++ + +L + E L RQ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFK---------NEILDKLRQTTDNIGLLT 315 Query: 162 AELARAQLQLDYATVTAPIDGR-ARRALVTEGALVGQDQA 200 ELA+ + + + + AP+ + + + TEG +V + Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1079 bits (2791), Expect = 0.0 Identities = 516/1032 (50%), Positives = 701/1032 (67%), Gaps = 6/1032 (0%) Query: 1 MARFFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSLYATYPGASAQVVEES 60 MA FFI RP+FAWV+++ +M+ G AI LPVAQYP IAPP VS+ A YPGA AQ V+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTAVIEREMNGVPGLLYTSATS-SAGQASLSLTFKQGVSADLAAVDVQNRLKIVEARLPE 119 VT VIE+ MNG+ L+Y S+TS SAG +++LTF+ G D+A V VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGKVQFWGA 179 V++ GIS+EK++ + ++ S++ + ++ +Y ++NV L R+ GVG VQ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAATVLADAPL 239 +YAMRIW D + LT D+ + ++ N ++ G +G + + A+++A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 TTPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSFVNGKTATGMGIKLAPGSNAV 299 P+ FG + LR +DGS + L+DVAR+E GG +YN + +NGK A G+GIKLA G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359 T K ++A + EL FFP G+K PY+T FV++S+ +VV TL EA +LVF VM+LF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLM 419 N RATLIPT+ VPV LLGTF + A G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 VEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALAVSIGF 479 +E+KLPP EAT K+M QI GA+VGI +VL++VF+PMAFFGG+ G IYRQF+ + ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVADDHHE-KDGFFGWFNRFVARSTHRYTRRVGRVLERPLRW 538 S +AL LTPALCATLLKPV+ +HHE K GFFGWFN S + YT VG++L R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGTPLAETMQSVRRVEEYVRTH 598 L++Y + A +L +LP++FLP+EDQG F+ M+ P G T + + +V +Y + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 SPSAY--TFALGGYNLYGEGPNGGMIFVTMKDWKERKRARDQVQAIIAEINAHFAGTPNT 656 + F + G++ G+ N GM FV++K W+ER + +A+I + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 MVFAINMPALPDLGLTGGFDFRLQDRGGLGYGAFVAAREKLLAEGRKDPV-LTDLMFAGT 715 V NMPA+ +LG GFDF L D+ GLG+ A AR +LL + P L + G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 QDAPQLKLDIDRAKASALGVSMEEINATLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRL 775 +D Q KL++D+ KA ALGVS+ +IN T++ G Y+ DF+ +V+++ VQAD + R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 DAADVTKLRVRNAKGEMVPLAAFATLHWTMGPPQLTRYNGFPSFTINGAASAGHSSGEAM 835 DV KL VR+A GEMVP +AF T HW G P+L RYNG PS I G A+ G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAV 895 A +E +AS LPAG GY W+G SY+ERLSG QAP L A+S +VVFL LAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 MLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQR-MSLA 954 MLVVPLG++G + TL ND+YF VGL+ TIGLSAKNAILIVE AKDL+ + + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATLFAIFL 1014 +A L A R+RLRPI+MTSLAF +GVLPLA + GA SGAQ A+G GV+GG++SATL AIF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFVCVGRVF 1026 VP+FFV + R F Sbjct: 1021 VPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 2/104 (1%) Query: 379 APRLTLPIFAGGRNRANLDVADARKHIAVAEYEKTIQTAFREV--ADALAARDQIDAQLA 436 P L LP +N + +V I Q +E+ A R + A++ Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 437 AQQAVYGVDAERLRLAQRRYDSGVASYLELLDAQRSTFESGQEL 480 + + V+ RL + +L+ + E+ EL Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL 268
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.3 bits (60), Expect = 0.034 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%) Query: 53 ASPSAASAPAAS--SAAAPAATTAAAADTPNPGGEK 86 +SP+AA+ A + A D PGG Sbjct: 388 SSPTAAAGGAGGGEPPKKRDPSAGAGTDPGGPGGGD 423
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 3e-04 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 12/139 (8%) Query: 38 PPAPAISRDEALAELKRVQAALDRIKQQASAATTYKQLDALDESTQALSADVDKLTAALV 97 P +S +E L ++ + Q LD + A +++ Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKEL--NLDKKRAERLTVLARINRYENLS- 230 Query: 98 PTRAQLQAQLDVLGPPPAPGAAPETPAVARQR------ADLNARKTQLDAALKQAADEKE 151 +++LD A + + ++ +L K+QL+ + KE Sbjct: 231 ---RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 152 SLANLTQQYSKLRRSLLRD 170 +TQ + LR Sbjct: 288 EYQLVTQLFKNEILDKLRQ 306 Score = 30.6 bits (69), Expect = 0.027 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 28/188 (14%) Query: 7 FARRVALIGLLHLLCAALPAAAADLASGASAPPAPAISRDEALAELKRVQAA----LDRI 62 R VA + L+ A + + + A+A S K ++ + I Sbjct: 56 RPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHS-----GRSKEIKPIENSIVKEI 110 Query: 63 K----QQASAATTYKQLDALDESTQALSADVDKLTAALVPTRAQL--------QAQLDVL 110 + +L AL L L A L TR Q+ + L Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 111 GPPPAPGAAPETPAVAR------QRADLNARKTQLDAALKQAADEKESLANLTQQYSKLR 164 P E + Q + +K Q + L + E+ ++ +Y L Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 165 RSLLRDQL 172 R + + +L Sbjct: 231 R-VEKSRL 237
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 25.5 bits (55), Expect = 0.025 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 6 IARAHARSAPGGEPAGRVETDARTAGDGRSFAQRRRSERRMGRKAN--ERVL 55 I +A S+PG E V++ + F RR E++ +N ERVL Sbjct: 35 IQQAAEDSSPGAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVL 86
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 26.5 bits (58), Expect = 0.044 Identities = 13/37 (35%), Positives = 20/37 (54%) Query: 29 RDIDAAVRRALDAENRGALNSMLGQPLPVAADVASVR 65 R + A + AE++ A N +G P+P+AAD R Sbjct: 417 RPVRAGITGDFSAESQFAGNIEIGAPVPLAADSKVRR 453
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 29.5 bits (66), Expect = 0.021 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 8/92 (8%) Query: 221 INQAQGEAAAILAVAEANSQAIQKIAQAIQSQGGMDAVNLKVAEQYVGAFGNLAKAGNTL 280 INQ A++ + SQ + + + + ++ V K+ NL G L Sbjct: 188 INQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLNGVGNKLQN-----LPNLDNIGAGL 242 Query: 281 IVPSNLSDLSTAIASALTIVNRSAPGALAPGA 312 +S + +AI+++ + N A A Sbjct: 243 DT---VSGILSAISASFILSNADADTRTKAAA 271
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 265 bits (679), Expect = 3e-81 Identities = 99/441 (22%), Positives = 171/441 (38%), Gaps = 73/441 (16%) Query: 396 IHDPSEMERVQPGDVLVADMTDPNWEPVMK-RASAIVTNRGGRTCHAAIIARELGVPAVV 454 + S + ++ D+T + + K T+ GGRT H+AI++R L +PAVV Sbjct: 145 VETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVV 204 Query: 455 GCGDATDVLKDGALVTVSCAEGDEGKIYDGLLETEVSEVQRGE------------LPSVP 502 G + T+ ++ G +V V G EG + E EV + L P Sbjct: 205 GTKEVTEKIQHGDMVIVD---GIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEP 261 Query: 503 --------VKIMMNVGNPQLAFDFSQLPNAGVGLARLEFIINNNIGVHPKAILEYPNVDA 554 V++ N+G P+ G+GL R EF+ + P Sbjct: 262 STTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDR-DQLPT---------- 310 Query: 555 DLKKAVESVARGHASPRAFYVDKLTEGIATIAAAFYPKPVIVRLSDFKSNEYKKLIGGSR 614 ++ E + KPV++R D ++ + Sbjct: 311 --------------------EEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYL---- 346 Query: 615 YEPDEENPMLGFRGASRYIAEDFAQAFEMECMALKRVRDEMGLTNVEIMVPFVRTVKQAE 674 P E NP LGFR + + F + AL R N+++M P + T+++ Sbjct: 347 QLPKELNPFLGFRAIRLCL--EKQDIFRTQLRALLRAS---TYGNLKVMFPMIATLEELR 401 Query: 675 RVVGLLGKFGLKRGDNG------LRLIMMCEVPSNAILAEEFLQHFDGFSIGSNDLTQLT 728 + ++ + K G + + +M E+PS A+ A F + D FSIG+NDL Q T Sbjct: 402 QAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYT 461 Query: 729 LGLDRDSGMELLAVDFDERDPAVKFMLKRAIDTCRKLDKYVGICGQGPSDHPDFAKWLAD 788 + DR + E ++ + PA+ ++ I K+VG+CG+ D L Sbjct: 462 MAADRMN--ERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLG 518 Query: 789 EGIASISLNPDTVIETWQALA 809 G+ S++ +++ L Sbjct: 519 LGLDEFSMSATSILPARSQLL 539
>cloacin#Cloacin signature. Length = 551 Score = 39.7 bits (92), Expect = 1e-05 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 13 VGVGVGVGVGVGISV-----GVGVGVGVGGGGGGGGGGGGGGDGDGDGDGDGGGPNARQA 67 +GVG G G G S G G G G+ GGG G G GGG G G G GG +A A Sbjct: 27 LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Query: 68 ASVY 71 + Sbjct: 87 PVAF 90 Score = 33.9 bits (77), Expect = 0.001 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 7/73 (9%) Query: 14 GVGVGVGVGVGISVGVGV-------GVGVGGGGGGGGGGGGGGDGDGDGDGDGGGPNARQ 66 G G+GVG G S G G G G G G GGG G G G G G G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 67 AASVYRAAWHVPA 79 +A A+ PA Sbjct: 82 SAVAAPVAFGFPA 94
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 41.4 bits (97), Expect = 7e-06 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 22/122 (18%) Query: 342 VLYAAPSMLLSDITSAYNRAVVDNVAKVINVSLGVCEADARASGTQAADDRIFKSAVAQG 401 VL S I A+ + +I++SLG A + AVA Sbjct: 117 VLNKQGSGQYDWIIQGIYYAI-EQKVDIISMSLG---GPEDVPELHEAVKK----AVASQ 168 Query: 402 QTFVVAAGDAGAYECSVSRVSGGQGVPARSNYSVSEPATSPYVVAVGGTTLSTDRTTLAY 461 + AAG+ G + + P V++VG + + Sbjct: 169 ILVMCAAGNEGDGDDRTD--------------ELGYPGCYNEVISVGAINFDRHASEFSN 214 Query: 462 AG 463 + Sbjct: 215 SN 216
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.0 bits (70), Expect = 0.011 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 17/79 (21%) Query: 104 LLQSLAQIASERPALYISGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQATI 163 LL +L +I+ P L + + +I L L ++Q+E A + Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILS-----------------FLGKVQMEVTCALL 403 Query: 164 DAERPDVAVIDSIQTIYSE 182 + I IY E Sbjct: 404 QEKYHVEIEIKEPTVIYME 422
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 438 bits (1127), Expect = e-156 Identities = 207/353 (58%), Positives = 270/353 (76%) Query: 1 MPRPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLRGTDGFGLLD 60 M RPI A++ AL NLS+VR+ A ++VW++VKANAYGHG+ R++ + TDGF LL+ Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN 60 Query: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 L+EA+ LRE GW GPIL+LEGFF + D+++ D++ LTT VH++ Q++ L+ ARL P+++ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI 120 Query: 121 QLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDADGERGVAEQMATFERGA 180 LK+NSGMNRLG+ P++ W++ RA +G++TLM+HF++A+ G++ MA E+ A Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAA 180 Query: 181 QGIAGARSFANSAAVLWHPSAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLASELI 240 +G+ RS +NSAA LWHP AHFDWVRPGI+LYGASPSG+ DIA+ GL+P MTL+SE+I Sbjct: 181 EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEII 240 Query: 241 AVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPRIAPEGTPVVVDGVRTRIVGRVS 300 VQTL G+ VGYG + A D RIG+VA GYADGYPR AP GTPV+VDGVRT VG VS Sbjct: 241 GVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVS 300 Query: 301 MDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCAVAPRVPV 353 MDML VDLTP PQAG+G VELWG+ + IDDVAA TVGYELMCA+A RVPV Sbjct: 301 MDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPV 353
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.049 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 4/139 (2%) Query: 13 FFSSLADSALLIAAIALLKDLHAPNWMIPLLKLFFVLSYVVLAAFVGAFADSRPKGHVMF 72 FFS L + L ++ + D + P + F+L++ + A G +D ++ Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 73 ITNSIKVVGCLIMLFGAHP----LIAYGIVGFGAAAYSPAKYGILTELLPPERLVAANGW 128 I G +I G ++A I G GAAA+ ++ +P E A G Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 129 IEGTTVGSIILGTVLGGAL 147 I +G +GG + Sbjct: 144 IGSIVAMGEGVGPAIGGMI 162
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 29.4 bits (65), Expect = 0.034 Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 13/121 (10%) Query: 124 ARQAAAESGVRAAADAPAPAAAPESRTRDATIARGASPAEPEEPGVAGVVGVADEPSVAG 183 + +AAA + R A A A A E + A I + A P V Sbjct: 213 SIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVV----------ATA 262 Query: 184 GARRARTSGGGAEVPASALDLTDAAEATRPAAAPAPAALTGGDAGAAASDEDMS-WFDLE 242 R GA A A ++DA A AP+ + G A S W D Sbjct: 263 AGRGLIQVAQGAASLAQA--ISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQT 320 Query: 243 P 243 P Sbjct: 321 P 321
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.2 bits (104), Expect = 3e-08 Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 79 VAPVAQRSGVGLALLREAVRIARAERLDGVLLEVRPSNPRAIRLYERFGFVSVGRRRNYY 138 VA ++ GVG ALL +A+ A+ G++LE + N A Y + F+ Y Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLY 156 Query: 139 PAKHRSREDAI 149 + E AI Sbjct: 157 SNFPTANEIAI 167
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 28.3 bits (62), Expect = 0.025 Identities = 15/50 (30%), Positives = 23/50 (46%) Query: 25 VATAAVAPADAFAATAKTAQSAKGKKSAAKKSLRAASSSAEPRAKGARKR 74 +A+ A APA +A +A G+ +A LRA + + P A G Sbjct: 27 LASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTLTCAPTASGTHPA 76
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 5e-04 Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 49 VPSPSAGTVKEVKVKVGDAVSQGSLIVLLDGAQAAAQPAQANGAATSAAQPAAAPAAA 106 + VKE+ VK G++V +G +++ L A A + + A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156 Score = 33.6 bits (77), Expect = 0.002 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 9/91 (9%) Query: 162 VPSPAAGVVKDIKVKVGDAVSQGSLIVVLEASGGAA------ASAPQAAAPAAPAPAPAP 215 + +VK+I VK G++V +G +++ L A G A +S QA + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 216 QAAPAAAPA---PAQAPAPAASGEYRASHAS 243 P P + S E S Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTS 189
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.012 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 18/85 (21%) Query: 700 PVLIEQVLV-NLMKNAAEAMQEARPQAENGVIRVVADLEAGFVDIRVIDQGPGVDEATAE 758 P ++ Q LV N +K+ + G I + + G V + V + G + T E Sbjct: 256 PPMLVQTLVENGIKHGIA------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309 Query: 759 RLFEPFYSTKSDGMGMGLNICRSII 783 S G G+ N+ + Sbjct: 310 ----------STGTGL-QNVRERLQ 323
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 113 bits (283), Expect = 2e-31 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 11 TVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQIACLILDVRMSGM 70 T+ V DDD A+R L L GY V+ S+A AG ++ DV M Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----AGDGDLVVTDVVMPDE 60 Query: 71 SGLELQERLIAENAALPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLE 130 + +L R+ LP++ ++ A+ +KGA D++ KPFD EL ++ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 131 KARNESKSVQEQRAASERLSKLTAREQQVLERI 163 + + +++ L +A Q++ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 0.001 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 116 LNRRLPRAVARTREGDFSLNGLLGFDLFGKTVGVIGTGLI--GSVFARIMTGFGMRVLAH 173 L +P A A RE + G+ FD V ++G G++ A + TG G + L Sbjct: 60 LENLIPEAFAVVREASKRVFGMRHFD-----VQLLG-GMVLNERCIAEMRTGEG-KTLTA 112 Query: 174 SLPPHDDALIALGVRYVPLDALLAEAD 200 +LP + +AL GV V ++ LA+ D Sbjct: 113 TLPAYLNALTGKGVHVVTVNDYLAQRD 139
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.8 bits (119), Expect = 1e-08 Identities = 95/399 (23%), Positives = 149/399 (37%), Gaps = 37/399 (9%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPNVARDLGVSIPAA---GMLVSGYALGVTIGAPILAVV 61 L +A+ A GIG +IM +LP + RDL S G+L++ YAL AP+L + Sbjct: 11 LSTVALDAVGIG----LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 62 TAKMPRKAALLALIGVFIVGNLFCAIAPGYATLMVARVVTAFCHGAFFGIGSVVASNLVA 121 + + R+ LL + V A AP L + R+V G+ +A ++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA-DITD 125 Query: 122 PNKRAQAIALMFTGLTLANVLGVPLGTALGQAFGWRATFWAVTGIGALAAAALAFCVPKR 181 ++RA+ M V G LG +G F A F+A + L F +P+ Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 182 LEMPAAGIAREFGVLRNPQVLMVLGISVLASASLFTVFTYIAPI-----------LEDVT 230 + + RE NP + A+L VF + + ED Sbjct: 185 HKGERRPLRRE---ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 231 GFTPHDVTLVLLLFG-LGLTVGGTVGGKLADW---RRMPSLVATLASIGVVLAAFAGTMR 286 + + + L FG L + G +A RR L G +L AFA Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 287 TPLPALVTIFVWGVLAFAIVPPLQILIVDRAS-HAPNLASTLNQGAFNLGNALGAWLGGT 345 P +V + G+ +P LQ ++ + +L + +G L Sbjct: 302 MAFPIMVLLASGGI----GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 346 AIHAGVPLAK-LPW-AGAAL---AMAALALTLWSASLER 379 A + W AGAAL + AL LWS + +R Sbjct: 358 IYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQR 396
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.7 bits (111), Expect = 9e-08 Identities = 95/395 (24%), Positives = 152/395 (38%), Gaps = 25/395 (6%) Query: 12 LILSVAVVGLGTGATLPLTALALTEAGHGTRIV---GILTAAQAGGGLAVVPFVTAITKR 68 ++ +VA+ +G G +P+ L + H + GIL A A A P + A++ R Sbjct: 10 ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDR 69 Query: 69 LGARQVIVASVVVLAAATALMQFTSNLVVWGVLRVVCGAALMLLFTIGEAWVNQLADDAT 128 G R V++ S+ A A+M L V + R+V G G A++ + D Sbjct: 70 FGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADITDGDE 128 Query: 129 RGRVVAIYATNFTLFQMAGPVLVSQIAGMT-HVRFALSGALFLLAL--------PSLASI 179 R R + F +AGPVL + G + H F + AL L S Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 180 RKTPIADEPHHDAHDRWTRVIPKMPALVVGTAFFALFDTLALSLLPIFAMAR--GVASEA 237 R+ + + A RW R + + AL+ L + +L IF R A+ Sbjct: 189 RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI 248 Query: 238 AVLFAAILLFGDTAMQFPIGWLADKLGRERVHLGAGCVVLALLPLLPAVVTTPWLCWPLL 297 + AA + A G +A +LG ER L G + +L A T W+ +P++ Sbjct: 249 GISLAAFGILHSLAQAMITGPVAARLG-ERRALMLGMIADGTGYILLAFATRGWMAFPIM 307 Query: 298 FVLGAAAGSVYTL----SLVACGERFRGSALVTASSLVSASWSAASFGGPLVAGALMEQF 353 +L + + L S ER +G + ++L S S GPL+ A+ Sbjct: 308 VLLASGGIGMPALQAMLSRQVDEER-QGQLQGSLAALT----SLTSIVGPLLFTAIYAAS 362 Query: 354 GGDALIGVLIVSAIAFVGAALWERRALPMQAARRG 388 I A ++ RR L A +R Sbjct: 363 ITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRA 397
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 1e-06 Identities = 78/398 (19%), Positives = 125/398 (31%), Gaps = 59/398 (14%) Query: 50 VAPSVIAEWGVKKQA---LGPVFSASLFGMLLGALGLSVLADRIGRRPVLIGATLFFALA 106 V P ++ + G + + A L L+DR GRRPVL+ + A+ Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 107 MLATPFATSIPILIALRFVTGLGLGCIMPNAMALVGECSPGAHRVKRM----MIVSCGFT 162 A + +L R V G+ G A A + + + G R + G Sbjct: 87 YAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 163 LGAALGGFVSAALIPAFGWRAVFFVGGAVPLALAAAMAASLPESPQSLVLRGRHDAARAW 222 G LGG + F A FF A+ LPES H R Sbjct: 146 AGPVLGGLMG-----GFSPHAPFFAAAALNGLNFLTGCFLLPES---------HKGERRP 191 Query: 223 LAKFAPRLAVPPDTRLVVREAGPRGAPVAELFRSGRARVTLLLWAINF-MNLIDLYFLSN 281 L + A P+A + V L A+ F M L+ + Sbjct: 192 LRREALN-------------------PLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 282 WLPTVMRDAGYASGTAVIVGTVLQTGGVIGTLS----LGWFIERHGFARVLFACFACATI 337 W+ + A +G L G++ +L+ G R G R L Sbjct: 233 WVIFGEDRFHW---DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 338 AIGLIGPVAHAFVWLLAAVFVGGFCVVGGQPAVNALAGHYYPTSLRSTGIGWSLGVGRVG 397 L+ ++ V + + G PA+ A+ + G + + Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGI--GMPALQAMLSRQVDEERQGQLQGSLAALTSLT 347 Query: 398 SVLGPLVGGQLIA--------LGWSNDALFHAAAVPVL 427 S++GPL+ + A W A + +P L Sbjct: 348 SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 73.8 bits (181), Expect = 1e-17 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 6/243 (2%) Query: 7 LFYKEILRFWKVSFQTVLAPVVTALLYLTIFGHALTGRVNVYPGVEYVSFLVPGLVMMSV 66 ++ + + + K + ++L + L+YL G L V GV Y +FL G+V S Sbjct: 19 VWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSA 78 Query: 67 LQNA-FANSSSSLIQSKITGNLVFMLLPPLSSADIFGAYVLASVVRGLAVGAGVFVVTVW 125 + A F ++ + + ML L DI + + + GAG+ VV Sbjct: 79 MTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAA 138 Query: 126 FIPMSFAAPLYIVAFALFGSAILGTLGLIAGIWAEKFDQLAAFQNFLIMPLTFLSGVFYS 185 + + LY + +LG++ A +D +Q +I P+ FLSG + Sbjct: 139 LGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFP 198 Query: 186 THSLPPVWREVSRLNPFFYMIDGFRYGFFG--IADVNPLASLS---VVAGFFVLLALIAM 240 LP V++ +R P + ID R G + DV +V FF+ AL+ Sbjct: 199 VDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258 Query: 241 RLL 243 RLL Sbjct: 259 RLL 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.037 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 34 LLGPNGAGKTTLISILAGL 52 L G G GK+TLI+ L GL Sbjct: 601 LEGTGGIGKSTLINTLVGL 619
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.026 Identities = 12/73 (16%), Positives = 22/73 (30%) Query: 74 RTTQLAMGRNWRTATPAQQQQVIEQFKQLLIRTYSGALAQLKPDQQIQYPPFRADADATD 133 R + A ++ +Q +T + L+ L P + T+ Sbjct: 107 NLGSALQSRPFEFVRRADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTN 166 Query: 134 VVVRTVAMNNGQP 146 V R M+ P Sbjct: 167 VARRIALMDRTSP 179
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 224 bits (571), Expect = 2e-74 Identities = 85/220 (38%), Positives = 114/220 (51%), Gaps = 8/220 (3%) Query: 32 AAAALSGCATVQTPTKG--DPFEGFNRTMYTFNDKV-DQYALKPVARGYQWAVPQPMRDS 88 L GCA+ T +G DP EGFNRTMY FN V D Y ++PVA ++ VPQP R+ Sbjct: 11 GTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNG 70 Query: 89 VTNFFSNIGDVYIAANNLVQLKIADGVGDIMRVVINTVFGVGGLFDVATLAKLPKHAND- 147 ++NF N+ + + N +Q G+ R +NT+ G+GG DVA +A + Sbjct: 71 LSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEP 130 Query: 148 --FGVTLGHYGVPSGPYLVLPLLGPSTVRDTAGLAVDYAGNPLTYVRPDGVSWGLFGLNL 205 FG TLGHYGV GPY+ LP G T+RD G D A P+ +S G + L Sbjct: 131 HRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMAD-ALYPVLSWLTWPMSVGKWTLEG 189 Query: 206 VNTRANLLGAGDVLEAAAIDKYSFVRNAYLQRRQALIGGA 245 + TRA LL + +L + D Y VR AY QR + G Sbjct: 190 IETRAQLLDSDGLLR-QSSDPYIMVREAYFQRHDFIANGG 228
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 359 bits (923), Expect = e-125 Identities = 108/344 (31%), Positives = 181/344 (52%), Gaps = 2/344 (0%) Query: 8 DRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLHTAFSF 67 ++TE TPK+ AR++GQVA+S+E+ S AL+ A LS EH ++ Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM--LIPA 61 Query: 68 DRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALATPMAMGGWLVSTKTFELKFER 127 +++ + + + LE Y P+L + + A+A+ + G+L+S + + ++ Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 128 LNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHAALADAL 187 +NPI G RIFSI+ ++ SI K +++ + I I + LL L T + Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 188 HLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRIRQQ 247 ++ + G +V++ D ++ +QY K+L+M+K+E+KRE++E EG P +K + RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 248 QRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARIRELAAE 307 + + R M NV + VVV NPTH A+ + Y GE P V K + +R++A E Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEE 301 Query: 308 HHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 351 VP+L+ PLARALY + ++ IP A AEVL W+ + Sbjct: 302 EGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.004 Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 28 GGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLA 70 GGG G + +G G G + G GTGG + + P+A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 30.1 bits (67), Expect = 0.022 Identities = 17/56 (30%), Positives = 22/56 (39%) Query: 17 AAATAALVAACGGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLASN 72 A +T+ + G G AS +G + GGGS G GGSG N Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Score = 29.7 bits (66), Expect = 0.025 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 28 GGGGDGGSNASVNTGTGGGDTS-------AGGGSNGGTGGTGGSGSTPLASNQAAITVST 80 GG DG +S N GGG S +G G+ GG G +GG T + A V+ Sbjct: 31 GGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Query: 81 G 81 G Sbjct: 91 G 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 5e-23 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 1 MDKSMKILVVDDFPTMRRIVRNLLKELGYSNVDEAEDGLAGLARLRGGGYDFVISDWNMP 60 M + ILV DD +R ++ L GY V + + G D V++D MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 NLDGLAMLKEIRADASLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPF 110 + + +L I+ LPVL+++A++ I A++ GA Y+ KPF Sbjct: 59 DENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 4e-14 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 14/146 (9%) Query: 1 MQKKIKVLCVDDSALIRSLMTEIINSQPDMEVCATAPDPLVARELIKQHNPDVLTLDVEM 60 M +L DD A IR+++ + ++ + I + D++ DV M Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVM 57 Query: 61 PRMDGLDFLEKLMRLRP-MPVVMVSSLTERGSEITLRALELGAVDFVTKPRVGIRDGMLD 119 P + D L ++ + RP +PV+++S+ ++A E GA D++ KP D Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP--------FD 107 Query: 120 YSEKLADKVRAASRARVRQNPQPHAA 145 +E + RA + + R + + Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDS 133