>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 33.3 bits (76), Expect = 0.001 Identities = 13/51 (25%), Positives = 27/51 (52%) Query: 233 PFTAELDASDIEKGTYPHFMLKEIDEQPLVIRNIIQKYQDENGEIELDQDI 283 P+ EL +S + +GT+P L ++ L + + ++ Q E E ++D+ Sbjct: 119 PYARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQTTEEENKDV 169
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 107 bits (270), Expect = 1e-27 Identities = 69/445 (15%), Positives = 162/445 (36%), Gaps = 51/445 (11%) Query: 15 ELLERKPPRFIAGLIVFLLMSLFVFLIWAYVSKIDIVSKGTAMIQGKSDVSVSRTQIVGV 74 EL+E R + F++ L + I + + +++IV+ + + + Sbjct: 47 ELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSI 106 Query: 75 IDTVAVKPGDEVKKGNILIQL----KNQELTDKQSQMNQIVEHLEKQKGMLEQLKESIQS 130 + + VK G+ V+KG++L++L + QS + Q + + + + E + Sbjct: 107 VKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI-ELNKL 165 Query: 131 HKSSFLDDVDKKIREEYQA------YDQRYQSIQNEKDN-EIKTIENSKISSEQDEVLQG 183 + D+ + E + +++ + QN+K E+ + + Sbjct: 166 PELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINR 225 Query: 184 LIAENENIQREIDIIEKQKTK-----ENILEEQKQVIDDKK--GNLESQKNSVEKRIQQR 236 + + +D K +LE++ + ++ +SQ +E I Sbjct: 226 YENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 237 KETLEHERTKVDVTKEGKQVQKKDALKQYKEESIISVNQRIQSLEQELFIKKQELDGLRH 296 KE + K + L + ++ I L EL ++ Sbjct: 286 KEEYQLVTQLF----------KNEILDKLRQ-----TTDNIGLLTLELAKNEERQ----- 325 Query: 297 QNETTIIKAEKDGIVQFPAILQQGDLINPGQEIVSIIPKEEQKKVRILLPAQEIKGIKKG 356 + ++I+A VQ + +G ++ + ++ I+P+++ +V L+ ++I I G Sbjct: 326 --QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVG 383 Query: 357 DKVQY---SFKLQKTDKQMGQITYVSAYPTFDKNTKGYMYELEATIDTKDLQE------L 407 +F + +G++ ++ D+ + + +I+ L L Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLV-FNVIISIEENCLSTGNKNIPL 442 Query: 408 HIGMVGRASVITGEEPVWKFILRKL 432 GM A + TG V ++L L Sbjct: 443 SSGMAVTAEIKTGMRSVISYLLSPL 467
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 28.1 bits (62), Expect = 0.032 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Query: 1 MKKCFSIVIMLILLMSSFPLSVTYAKEKNITLSNIEQMSSVFNDNTSLGEKISYIRNSD- 59 + K S+ ++L L+++S S TYA++ I + I D + ++++ + Sbjct: 4 VNKSISVFLILYLILTSSFPSYTYAQDLQIASNYI-------TDRAFIERPEDFLKDKEN 56 Query: 60 LNNWSVKEMNQALDKIDNLNLSIMERASLKREVIRSSGFSNFD 102 W KE + +D L +E K++ + S +S Sbjct: 57 AIQWEKKEAERVEKNLDTLEKEALE--LYKKDSEQISNYSQTR 97
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.1 bits (67), Expect = 0.025 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 275 KLYEKDEKATKNTKTSIDKKEGVLD------DSLSPSLNEKVTSHVKVKSTKLKFTTKPN 328 LYE K T K+ D L SL P+ + V+ K T+ Sbjct: 141 DLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAG-KEATEAK 199 Query: 329 VEILDSDKVATKRIGTDADNVEKTASNIVTTVQAS 363 E LD AT + GTDA + A NI+T Q + Sbjct: 200 -EALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233
>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M signature. Length = 147 Score = 29.3 bits (65), Expect = 0.009 Identities = 14/30 (46%), Positives = 19/30 (63%) Query: 17 LSSIAGLPLLLKTGLYDNRGFTREEKFQLI 46 + IAGL LLL T +NR +REE + L+ Sbjct: 43 VEQIAGLKLLLDTLRAENRQLSREEIYALL 72
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 8e-23 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MANETILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKV 60 M TILV DD+ IR ++ L GY V + R + + LVV D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIHMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLR 119 + + ++++ ++P++++SA+ M I GA DY+ KPF+ ELI I L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RY 121 Sbjct: 121 EP 122
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 153 bits (387), Expect = 4e-46 Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 37/336 (11%) Query: 5 NYLIVGGNSFIGINLALGLLKKGQNVKVFSRHINNFPQNIISE----------VEFIKGD 54 YL+ G FIG +++ LL+ G V ++N++ + + +F K D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGID-NLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 55 LANVEDIYK--ALVNVDIIIYLAATSNVTTSIEDVFGDINSSLF-FLNFMESAKNFPIKK 111 LA+ E + A + + + V S+E+ +S+L FLN +E ++ I+ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 IVLASSGGTVYGEPEYLPIDEEHPL-KPLSPYGITKVSLENYLYFYKKKYGMDYVVCRYS 170 ++ ASS +VYG +P + + P+S Y TK + E + Y YG+ R+ Sbjct: 121 LLYASSS-SVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 171 NPYGKYQNPLKKVGAINCFLYQHLSNEKINIYGNPQEIIRDYIYIDDLVEVTIQLSQ--- 227 YG + P A+ F L + I++Y ++ RD+ YIDD+ E I+L Sbjct: 180 TVYGPWGRPDM---ALFKFTKAMLEGKSIDVYNY-GKMKRDFTYIDDIAEAIIRLQDVIP 235 Query: 228 --------------LNHLKFCVYNIGSGKGLSLKRIIVELEKLTERKVEFICYKQKQENV 273 + + VYNIG+ + L I LE + + + +V Sbjct: 236 HADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDV 295 Query: 274 QKIILNIDRVRRECNWEPKVDFKSGIRLNKLWIEEF 309 + + + + P+ K G++ W +F Sbjct: 296 LETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>SOPEPROTEIN#Salmonella type III secretion SopE effector protein signature. Length = 239 Score = 28.5 bits (63), Expect = 0.021 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 25 SYTPAMKDQDHIHIIADNYSQIPDRTTAIL-GKGIDPTPYIVQSAQRLQNAG 75 S PA Q I++ YS+ D+ +L KGI+ P++ + + +NAG Sbjct: 100 SKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAG 151
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 26.9 bits (59), Expect = 0.050 Identities = 9/38 (23%), Positives = 17/38 (44%) Query: 160 RKTLKEKQAELLIAIFLDGVSVTEYAEREGVSKSAISH 197 R+ + + L + S+ E A+ GV++ AI Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW 50
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 25.6 bits (56), Expect = 0.038 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 37 KEPTSPVKEPAPKKKEITLEEVRAKLAEK 65 ++ P PAP K+E+ L E+R L E+ Sbjct: 104 RKKEEPAAAPAPTKEEVLLTEIRDLLKEQ 132
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 27/193 (13%), Positives = 74/193 (38%), Gaps = 6/193 (3%) Query: 8 DEKRKQIAEAAWNIIRKEGVEKASIRRVAAEAGMSSGALRHYFSTQDEMLLFIMNYYLEE 67 E R+ I + A + ++GV S+ +A AG++ GA+ +F + ++ I Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 68 GEKRSQNK--EWSENPVQAVEEVLLELVPIDEEKKIETSVWWILALRSLTSD---TIKDK 122 + ++ +P+ + E+L+ ++ ++ + I+ + ++ Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 123 KDEMTDGTYELANSMIEILALKGVLSDSMNAELEKSRLTALIEGLSIHALLRPDVYS-PE 181 + + +Y+ ++ +L + + I GL + L P + + Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKK 189 Query: 182 KVKEVIRYHLETL 194 + ++ + LE Sbjct: 190 EARDYVAILLEMY 202
>PF04647#Accessory gene regulator B Length = 212 Score = 28.6 bits (64), Expect = 0.018 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 3/124 (2%) Query: 54 TQLGYFITGLLLYFGGNSLLKRIEQLSQFDFINWFYILLGAVLVLISFSKPKETAKKRLI 113 +T LL++ + + F I L+ + F P + + + Sbjct: 76 KYYRCTLTSLLVFNVLAYI---AHLIDPAYFQLLILIAFITSLLALLFLVPVDNPRNLIS 132 Query: 114 SFIPKNTTIKGMIILGIIVFLIEFVTALPYFYSIFLMNHQTIETTPAILIIIGYNLVMVL 173 + + T ++ +++F Y + I L + L +G+ ++ Sbjct: 133 NTEQRKTLKLKTSMVLMVLFGGSIGAYRLYTHQIALAILLGVLWQTFTLTALGHKFIVGW 192 Query: 174 PSLL 177 Sbjct: 193 DRSF 196
>PF05272#Virulence-associated E family protein Length = 892 Score = 390 bits (1004), Expect = e-125 Identities = 119/428 (27%), Positives = 182/428 (42%), Gaps = 37/428 (8%) Query: 342 QAEEEFSD--EDWQTGLELDKQGRIKDTLDNIVLIIRHDEDLQH-IAFNCHRDGIDAKGG 398 E+ F + +D L L + +K ++ +R L +AF+ R+ A Sbjct: 424 DGEDPFGEWLDDEVARLRLRGRWLLKPRRAALIEALRSAPALAGCVAFDELREQPVAVRA 483 Query: 399 LPWEQIKCGWNDSDNALLKVYLSGKYGV--YSPTKTKDAVLAVAAERAYHPVKEYLDSLP 456 PW + D+D L Y+ YG S T+ A+ A HP ++++ + Sbjct: 484 FPWRKAPGPLEDADVLRLADYVETTYGTGEASAQTTEQAINVAADMNRVHPFRDWVKAQ- 542 Query: 457 KWDGISRVENLLIDYFGATDNSYTKATIR-------KTMVAAVARIYRPGTKFDSVLILN 509 +WD + R+E L+ G T + Y +R ++ VAR+ PG KFD ++L Sbjct: 543 QWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLE 602 Query: 510 GPQGIGKSTFFAKLAG-DWFSDSLTITDMKDKSGAEKLQGYWLLELGELAGMRKTDVEIV 568 G GIGKST L G D+FSD+ K E++ G EL E+ R+ D E V Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTH-FDIGTGKDSYEQIAGIVAYELSEMTAFRRADAEAV 661 Query: 569 KSFISRADDKYRASYGVNVESHPRQCVIVGSTNAESGFLRDITGNRRFWPVRISGNSRKK 628 K+F S D+YR +YG V+ HPRQ VI +TN +L DITGNRRFWPV + G + Sbjct: 662 KAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQ-YLFDITGNRRFWPVLVPGRANLV 720 Query: 629 AWQMTKEEVQQIWAEALVLYEKGEKLYLEGDD-VTMATSEQADAMETDEREGLVRTYLDT 687 Q + Q++AEAL LY GE+ + +D EQ + +G + L Sbjct: 721 WLQKFR---GQLFAEALHLYLAGERYFPSPEDEEIYFRPEQELRLVETGVQGRLWALLT- 776 Query: 688 LLPDDWDTMSLYERRNFLGGSEFGGGTRVGTVKRTLVCNMEIWCECFGKEASMLKPSDSY 747 R +E G + G T + + G + P Sbjct: 777 --------------REGAPAAE--GAAQKGYSVNTTFVTIADLVQALGADPGKSSPMLEG 820 Query: 748 AIGAIMRK 755 + + + Sbjct: 821 QVRDWLNE 828
>PF04183#IucA / IucC family Length = 580 Score = 27.9 bits (62), Expect = 0.029 Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 22/63 (34%) Query: 47 LKGQEMPKPMAMLSAVQKDGKTLVASEIYEITWKWLEERGCAHLVLPQLLERYAMSAARW 106 LK E P MA L ++ + L + ++R + A W Sbjct: 359 LKPDESPVLMATLMECDENNQPLAGA----------------------YIDRSGLDAETW 396 Query: 107 IQC 109 + Sbjct: 397 LTQ 399
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.1 bits (67), Expect = 0.020 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 247 ADILNNVLWQCFEDFPFDDETEILINPSGQFVLGGPAADTGLTGRKIMVDTYG 299 D++N+ Q E+FP D +INP G+F+L + +TGR I + G Sbjct: 572 GDVVNHGTEQDNEEFPEKDNEIFIINPEGEFIL---TKNWEMTGRFIEKNITG 621
>cloacin#Cloacin signature. Length = 551 Score = 33.1 bits (75), Expect = 0.004 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 26/140 (18%) Query: 11 VEG-EREFKKALSEINQSFKVLGSEMALVTSQFDKNDKSIQSITARNAVLNKEIDAQKEK 69 VE ER +++A +E+NQ+ + V ++ K++Q +R + E+DA + Sbjct: 316 VEAAERNYERARAELNQANED-------VARNQERQAKAVQVYNSRKS----ELDAANKT 364 Query: 70 ISTLKAALDNASSSFGE-----------NDRRTQNWQIQLNRAQAELNLMERELEESTIE 118 ++ A + + + + Q Q +N QA + +E ++ Sbjct: 365 LADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAA 424 Query: 119 ADNLGE---ELEDSGKSAED 135 + E + ED +SAE+ Sbjct: 425 LSSAMESRKKKEDKKRSAEN 444
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.0 bits (88), Expect = 5e-06 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%) Query: 59 GAFKDGKLIGVATLETKPYVKQEHKAKIGSVYVSPKARGLGAGKALIKECLELAKSLEVE 118 + + IG + + A I + V+ R G G AL+ + +E AK Sbjct: 69 LYYLENNCIGRIKIRSN----WNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFC 124 Query: 119 QVMLDVVVGNDGAKKLYESLGFKTFGV 145 +ML+ N A Y F V Sbjct: 125 GLMLETQDINISACHFYAKHHFIIGAV 151
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.003 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 26/105 (24%) Query: 382 LLHNAYQHSLENT----TITIRVLTETNSFTISVQDEGEGIPEEDIPHIFDRFYRVDKSR 437 L+ N +H + I ++ + + T+ V++ G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 438 TRATGGKGIGLAVAKEIVELHNG---SILVTSKLGVGTTFIIELP 479 G GL +E +++ G I ++ K G ++ +P Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.4 bits (232), Expect = 3e-24 Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIVLLDVMMPNMDGWD 62 IL+ DD+ + +L+ LS GY ++ + I D D+V+ DV+MP+ + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTIGADDYITKPFDEHVLVARIEAILRRTKK 121 +I++ ++P+++++A+N +K GA DY+ KPFD L+ I L K+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 D 122 Sbjct: 125 R 125
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.6 bits (105), Expect = 2e-08 Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 7/123 (5%) Query: 23 TKNPEAFSSSYEDVLKHEDPVAAMAKRLSNPDKYTLGVFKDNDLIGIATLETKPFIKQEH 82 T E FS Y K + + K + +N+ IG + + Sbjct: 36 TYTEERFSKPY---FKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSN----WNG 88 Query: 83 KAKIGSVFVSPKARGLGAGRALIKAIIENADKLHVEQLMLDVVVGNDAAKKLYESLGFQT 142 A I + V+ R G G AL+ IE A + H LML+ N +A Y F Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148 Query: 143 YGV 145 V Sbjct: 149 GAV 151
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 25.6 bits (56), Expect = 0.043 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Query: 75 TQSSISHQLRVLKQAKLVKNRKEGKVVYYSLA 106 TQ+++S R +K+ LVK YSL Sbjct: 37 TQATVS---RDIKELHLVKVPTNNGSYKYSLP 65
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.0 bits (67), Expect = 0.012 Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 9/195 (4%) Query: 36 VGEVSVNRREGWRIHEKDLEDFIERMKPGLRKLFFRNEELQSELHDLREKVSTLEQK--- 92 + E + E +K L F N+ L+ +L E++S ++K Sbjct: 44 ATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRK 103 Query: 93 ------EKVFPIANNVHISEDCREQLQLSHKQSELLLEHVGSLIKENQKLQEKNEALQKE 146 EK I D + L+ + S + +L E L + L+K Sbjct: 104 NDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 163 Query: 147 KYILIEEKMRLIDENKELSLQKQKDKKIDGDKENVNNNMSQKNHIENTKVEKVTFDVFQE 206 + + K L +K + + E + ++ K++ + + Sbjct: 164 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 223 Query: 207 VLDKYLKEEITQQQE 221 K E+ + Sbjct: 224 AARKADLEKALEGAM 238
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 31.5 bits (71), Expect = 0.009 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 23/103 (22%) Query: 411 IDVLDKKISQLYKDITTGKGLKANHTEDVLGKEDEQDDW-NSKLVEILLTGRSQKHNDLE 469 + VL KI Q+Y DI D+ G NS +E Q + ++ Sbjct: 261 VKVLSDKIIQIYSDI--------KPFADIAGINVPDTGLPNSASIE-------QIQSKIQ 305 Query: 470 EIKQQQQLLEDKQESLN-IVMNALKNQYQDELLNFSFDPENEK 511 E+ LE+ ++S + + NA NQ LNF P+ ++ Sbjct: 306 EL---GDTLEELRDSFDGYINNAFVNQIH---LNFVMPPQAQQ 342
>PERTACTIN#Pertactin signature. Length = 922 Score = 34.7 bits (79), Expect = 1e-05 Identities = 20/55 (36%), Positives = 25/55 (45%) Query: 6 QSSICFASSFPAIAPAAVPVIEPTPKPIAAPTGPPHTNPNPVNKDAPEAPPTTPP 60 Q S+ A + PA PA P +P P+P P P P + PEAP PP Sbjct: 559 QWSLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPP 613
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 140 bits (355), Expect = 2e-41 Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 13/220 (5%) Query: 102 SIIGRDDRIRVTDTTLYPYRAIVHLVIQFNGQEVYGCTGALISKDTVFTAGHCVYNKKLG 161 I+ +DR ++TDTT Y + ++ ++ + +G ++ KDT+ T H V + G Sbjct: 69 VILPNNDRHQITDTTNGHYAPVTYIQVEA-PTGTFIASGVVVGKDTLLTNKHVV-DATHG 126 Query: 162 GWAKNVIVTPGRNGNQAPYLPYSWTKLYSVSGWTDDGDSEFDYGAIKLNGSPGDYTGWLG 221 N + P ++ ++ SG D + + + N G+ Sbjct: 127 DPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL--AIVKFSPNEQNKHIGEVVKPAT 184 Query: 222 YRTTNVESPKGLLAVVPGYPCDKVGNEKYTMWTDYGPIEGTSPRILTYKMDTYGCQSGAP 281 + N E+ V GYP DK TMW G I + Y + T G SG+P Sbjct: 185 M-SNNAETQVNQNITVTGYPGDK---PVATMWESKGKITYLKGEAMQYDLSTTGGNSGSP 240 Query: 282 VYHDYSRTGVTIIATHTVG-RNSWNSGNRVTDDVFNNLKK 320 V+++ + +I H G N +N + ++V N LK+ Sbjct: 241 VFNEKN----EVIGIHWGGVPNEFNGAVFINENVRNFLKQ 276
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 0.001 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 24/131 (18%) Query: 397 EKKIDFHIEGDSALHPLPDHIKVSHLITILGNIIDNTFD-AVSEREEK-SVSFFVTDIGH 454 E ++ F + + A+ ++V ++ + +++N +++ + + T Sbjct: 237 EDRLQFENQINPAIM----DVQVPPML--VQTLVENGIKHGIAQLPQGGKILLKGTKDNG 290 Query: 455 DIVFEVIDSGIGIPEEKITTIFQKGFSTKGNNRGYGLANVKEMVDLL---EGTIEIQNEK 511 + EV ++G + + G GL NV+E + +L E I++ +EK Sbjct: 291 TVTLEVENTGSLALKNT------------KESTGTGLQNVRERLQMLYGTEAQIKL-SEK 337 Query: 512 NGGAIFTIYLP 522 G + +P Sbjct: 338 QGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.2 bits (146), Expect = 7e-13 Identities = 29/109 (26%), Positives = 47/109 (43%) Query: 35 NAKETMELLQREEIDLLLLDNYLPDGIGTDLLPKIHADFPNVDVIMVTAANENHMLEKAI 94 NA + + DL++ D +PD DLLP+I P++ V++++A N KA Sbjct: 35 NAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS 94 Query: 95 RNGVSNYLIKPVTLEKFVRTIEDYKRKKQLLHSNNEVNQALIDNFFGIS 143 G +YL KP L + + I + + S E + G S Sbjct: 95 EKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRS 143
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 28.7 bits (64), Expect = 0.030 Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 152 CEEAEEEEVIEEETGSRVFSFYEQHFGSLSPHTVEELSAWMEDLSEELVLKALQIAFE 209 E +E + + + + F +S E+ +++ S +L L L+ E Sbjct: 176 FSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVE 233
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 24.8 bits (53), Expect = 0.045 Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 3 NSEMILRLLTDLKIEQQALKEQLGKIQTAVTILEEKSAIVEAKPKTIEEKPAVAKQRA 60 N ++ ++ L+I L I+ A + A EAK K E+ A RA Sbjct: 189 NVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRA 246
>PilS_PF08805#PilS N terminal Length = 185 Score = 25.3 bits (55), Expect = 0.004 Identities = 8/31 (25%), Positives = 14/31 (45%) Query: 1 MEHNKNGILALIVLFVGLAFFVIGMVYHLWG 31 E +K L ++L VG+ + Y L+ Sbjct: 22 KEQDKGATLMEVLLVVGVIVVLAASAYKLYS 52
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 40.8 bits (95), Expect = 8e-07 Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 29/179 (16%) Query: 8 KKIIANSLKHLMETESFHKISVSDIMLHCQMRRQTFYYHFKDKFELLSWIYREETK---E 64 + I+ +L+ L + S+ +I + R Y+HFKDK +L S I+ E Sbjct: 14 QHILDVALR-LFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 65 NIIDFLD------YETWENIFDLLFDYFYEN-------------QKFYRNAFKVIE-QNS 104 +++ I + + +F V + Q + Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRN 132 Query: 105 FNHYLFEHTKNLYMKIIDELSVSCGFSLSDETKNTIASFYSHGFVGTIKDWIESKCEVD 163 ++ + I+ +D A G +++W+ + D Sbjct: 133 LCLESYDRIEQTLKHCIEA-----KMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186
>PF06580#Sensor histidine kinase Length = 349 Score = 26.8 bits (59), Expect = 0.045 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%) Query: 53 NIVQHAY--KEDVGEITIVFGLYEDRLEIMVADNG 85 N ++H G+I + + + V + G Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 9e-20 Identities = 36/147 (24%), Positives = 75/147 (51%), Gaps = 12/147 (8%) Query: 2 SILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDIM 61 +IL+ DD+ V+ + L +AGY D+ ++A L+ +I + DL++ D++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWI-------AAGDGDLVVTDVV 56 Query: 62 MPEIDGLEVCRRLQKEEKFKDVPIIFVTALEDANKLAEALDMGAMDYITKPINKVELLAR 121 MP+ + ++ R++K D+P++ ++A +A + GA DY+ KP + EL+ Sbjct: 57 MPDENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 122 MRVALRLKSELNWHKEQEENLRNELDL 148 + AL + E++ ++ + L Sbjct: 115 IGRALAEPKRR--PSKLEDDSQDGMPL 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.0 bits (174), Expect = 9e-15 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 3/107 (2%) Query: 777 TILIVDDDHRNIFALQNALEKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDGY 836 TIL+ DDD L AL + ++ N + DL++ D++MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAF 63 Query: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNL 883 + + I+ ++P++ ++A+ K GA DY+ KP +L Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDL 108
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.005 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Query: 322 QATDVNLKVEYVDELEKLTIEVEDNGIGFDTGYIGKNPGHYGLIGLNERVRLINGE---I 378 + ++ + +T+EVE+ G K GL + ER++++ G I Sbjct: 275 LPQGGKILLKGTKDNGTVTLEVENTGSLALKN--TKESTGTGLQNVRERLQMLYGTEAQI 332 Query: 379 HILSEKMKGTKIYIQVP 395 + ++ K + + +P Sbjct: 333 KLSEKQGKVNAM-VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 8e-19 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 5 VLIVDDHFVVREGLKLIIETSDSFQIIGEATNGEEALSFIEKKKPDVILMDLNMPKMSGL 64 +L+ DD +R L + + + + +N +I D+++ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG-YDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 ETIEVLNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAI 120 + + + K + P+++++ N +K E GA YL K D L + A+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.011 Identities = 40/293 (13%), Positives = 102/293 (34%), Gaps = 17/293 (5%) Query: 153 SDALLQLDKKLEKEMDQRFKPSGRKPEINVSLQEIKKLEEKMKEWQGKIGTYEKQVEQLK 212 S + L+ + ++ + ++ + + + ++E+ Sbjct: 140 SAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKAL 199 Query: 213 ESEEKLVFVRAEKESAEKRKQDYEILAALEPLVIEKRAHEKVLENENGQFPVNGMARYEA 272 E A+ + + + LAA + + + + A A Sbjct: 200 EGAMNFST--ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 273 IKAKMEPLQLQVDSLHKKIETVQSEMESIQIDEEFLQKESYV--EELRMQHMSYENARQE 330 ++A+ L+ ++ +++++++ ++ L+ E + ++ + + ++ R++ Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 331 MRDITGTITNIKEELAELEQQIGATFEKETVLSFDM--SLATKELITQAVQKAREL---- 384 + ++ E +LE+Q + L D+ S K+ + QK E Sbjct: 318 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377 Query: 385 ETQKAQLDDRFKVAQE-------QLEEQEENIRQIQKQMLADEERNALAEKEK 430 E + L ++E LEE + ++K EE L EKEK Sbjct: 378 EASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEK 430
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 31.2 bits (70), Expect = 0.005 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 7/108 (6%) Query: 20 IKTATKGIASNGKPFLTVILQDPSGDIEAKLWDV-------SPEVEKQYVAETIVKVAGD 72 IK+ + I F +D G+I+A WD + +Y +V Sbjct: 779 IKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHKYNKTGEYEVKLT 838 Query: 73 ILNYKGRIQLRVKQIRVANENEVTDISDFVEKAPVKKEDMVEKITQYI 120 + + G I K+I+V + V I++ +K + + K + Sbjct: 839 VTDNNGGINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLV 886
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.003 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 51 NNSNANNSNGNNNNNSNANNSNGNNNNNSNANNSNGSNNNNSNANNSNGNNNNSNANNSN 110 +N+ A++++GN N G ++ S ++ N S + G + + Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHG---NG 65 Query: 111 GNNNNNSNANNSNGNNNS 128 G N N+ + + GN ++ Sbjct: 66 GGNGNSGGGSGTGGNLSA 83 Score = 29.7 bits (66), Expect = 0.014 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 3/74 (4%) Query: 44 NNDSSNNNNSNANNSNGNNNNNSNANNSNG---NNNNNSNANNSNGSNNNNSNANNSNGN 100 +N +++ + N N A++ +G NN + S S N GN Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 101 NNNSNANNSNGNNN 114 N+ + + GN + Sbjct: 69 GNSGGGSGTGGNLS 82
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 62.0 bits (150), Expect = 2e-11 Identities = 54/287 (18%), Positives = 91/287 (31%), Gaps = 31/287 (10%) Query: 107 NIEAEK----VEKENIEAKKRLENIEENAEEIKKAKKTLEETDGEKRIDPAEENGEKNRE 162 N E EK V+ NI NI+ + + + + D PA + E Sbjct: 982 NPEVEKRNQTVDTTNITT---PNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 163 QVEETPKEEETGEGKKLDQLEEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLGEPTEEV 222 V E K+E K E T + E E +T E + Q G E Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE---VAQSG---SET 1092 Query: 223 GETTPEQVEEPPKEEETGEGKKLDQLGEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLG 282 ET + +E E+ + K TE+ E + PK+E++ + Sbjct: 1093 KETQTTETKETATVEKEEKAK------VETEKTQEVPKVTSQVSPKQEQSETVQP----- 1141 Query: 283 ETTEEDVEKTPEQVEETVEGKKLDQLEEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLE 342 + + + + E + TE+ + T VE+P E T + + Sbjct: 1142 ---QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN--TGNSVV 1196 Query: 343 EPTEEVGETT--PEQVEEMPKEEGTGEGKKLDQLEEPTEEAGEKTPE 387 E E T P E + + + + E A + + Sbjct: 1197 ENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 54.7 bits (131), Expect = 3e-09 Identities = 72/439 (16%), Positives = 132/439 (30%), Gaps = 43/439 (9%) Query: 11 DKVKETEKIEENKEKSIE---KEEKKKQAYNFDKYNEQFEERKQEEMEVVHDEGDQRINF 67 DKV T+ N + E + FD Q R + +V + D + Sbjct: 912 DKVVVTKSATGNFTLQVADKTGEPNHNELTLFDASKAQ---RDHLNVSLVGNTVD--LGA 966 Query: 68 DKYQKQLNKDIAEQQNEQAEINPDVDSAEVMEAQKVERENIEAEKVEKENIEAKKRL--- 124 KY+ + + N + E + + ++ + E I Sbjct: 967 WKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVP 1026 Query: 125 --------ENIEENAEEIKKAKKTLEETDGEKRIDPAEENGEKNREQVEETPKEEETGEG 176 E E AE K+ KT E + + + +N E +E +T E Sbjct: 1027 PPAPATPSETTETVAENSKQESKT-VEKNEQDATETTAQNREVAKEAKSNVKANTQTNE- 1084 Query: 177 KKLDQLEEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLGEPTEEVGETTPEQVEEPPKE 236 + Q E ET + +E E+ + K TE+ E + PK+ Sbjct: 1085 --VAQSG---SETKETQTTETKETATVEKEEKAK------VETEKTQEVPKVTSQVSPKQ 1133 Query: 237 EETGEGKKLDQLGEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLGETTEEDVEKTPEQV 296 E++ + EP E ++EP + +T +Q + T +VE Sbjct: 1134 EQSETVQP---QAEPARE--NDPTVNIKEP--QSQTNTTADTEQPAKETSSNVE--QPVT 1184 Query: 297 EETVEGKKLDQLEEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLEEPTEEVGETTPEQV 356 E T +E P TT V + ++ + E T+ Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDR 1244 Query: 357 EEMPKEE--GTGEGKKLDQLEEPTEEAGEKTPEQVEEMPKQMEADGDKKLDQWGETTEED 414 + + T L + + V + Q+E + + + + W T + Sbjct: 1245 STVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMN 1304 Query: 415 VEKNPEQVEETPKKEETVE 433 + Q K + Sbjct: 1305 KNYSSSQYRRFSSKSTQTQ 1323 Score = 54.3 bits (130), Expect = 3e-09 Identities = 60/350 (17%), Positives = 117/350 (33%), Gaps = 24/350 (6%) Query: 185 PTEEVGETTPEQVEEPPKEEETGEGKKLDQ--LGEPTEEVGETTPEQVEEPPKEEETGEG 242 T + Q + P E ++D+ + P T E V E K+E Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 243 KKLDQLGEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLGETTEEDVEKTPEQVEETVEG 302 K E T + E E +T E + Q G T+ E + +ET Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNE---VAQSGSETK---ETQTTETKETATV 1106 Query: 303 KKLDQLEEPTEEVGETTPEQVEEPPKEEETGEGKKLDQLE---EPTEEVGETTPEQ---- 355 +K ++ + TE+ E + PK+E++ + + +PT + E + Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Query: 356 VEEMPKEEGTGEGKKLDQLEEPTEEAGEKTPEQVEEMPKQMEADGDKKLDQWGETTEEDV 415 E P +E + + + TE T V E P+ + E++ + Sbjct: 1167 DTEQPAKETSSNVE-----QPVTESTTVNTGNSVVENPENTTPA-TTQPTVNSESSNKPK 1220 Query: 416 EKNPEQVEETPKKEETVEGKKLDQLGETTEEAGGKTPEQVEEMPKQMEADGDKALDQSEE 475 ++ V P E D+ + V + AL+ + Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAV--LSDARAKAQFVALN-VGK 1277 Query: 476 PLEQEVQEDENPSETRENIEGTDSSEGSREETVKKEFEPRSETEEESGFD 525 + Q + + E +E + N+ +++S + + T+ + G+D Sbjct: 1278 AVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQTQLGWD 1327
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 129 bits (327), Expect = 1e-35 Identities = 81/356 (22%), Positives = 131/356 (36%), Gaps = 53/356 (14%) Query: 3 IGIDLGTTNSAVAYIDDSGNPTILP-----NREGERVTPSVIFFEDGSPVIGSTAKSISV 57 + IDLGT N+ + Y+ G P ++ SV +G AK + Sbjct: 13 LSIDLGTANTLI-YVKGQGIVLNEPSVVAIRQDRAGSPKSVA-------AVGHDAKQMLG 64 Query: 58 SDPTNTVQFVKRQMGNASYKFPIGGEVFTPEDLSALILKRLKEDAEEAIGAKVTKAVITV 117 P N R M K + + F E + +K++ ++ + ++ V Sbjct: 65 RTPGNIA--AIRPM-----KDGVIADFFVTEKMLQHFIKQVHSNS---FMRPSPRVLVCV 114 Query: 118 PAYFDDAQRKATQDAGRIAGLHVLKVINEPTAAALAYGLANREQKQNVMVYDLGGGTFDV 177 P +R+A +++ + AG + +I EP AAA+ GL E + MV D+GGGT +V Sbjct: 115 PVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGS-MVVDIGGGTTEV 173 Query: 178 TLIQLNQDEVVVKATGGDRNLGGFDFDNKIFELVEQKFEEEHGLDLYDDLNAVQDLREKA 237 +I LN VV +GG FD I V + + G A Sbjct: 174 AVISLN--GVV---YSSSVRIGGDRFDEAIINYVRRNYGSLIG-------------EATA 215 Query: 238 EACKKMLSSRKKSVITLSSQ--GRTV------KVEVTKEKFDELLSPLLSRTALIMKNVL 289 E K + S + GR + + + E L L+ + L Sbjct: 216 ERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVAL 275 Query: 290 MDA--ELSWGDIDK-IVLVGGSTRVPAVSDLIERTTGIKPSKDVNPDEVVALGAAI 342 EL+ ++ +VL GG + + L+ TGI +P VA G Sbjct: 276 EQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.8 bits (72), Expect = 0.002 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 3/123 (2%) Query: 86 QFDNPTETTAQELIDLAWSLLEEGRVADAIVVGKKVTEDYGANAHGWAILARAHYMWNEF 145 + + T ++L LA++ + G+ DA V + + ++ + L ++ Sbjct: 27 MLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQY 86 Query: 146 DDAIYEYRKAMDIETNNDVFYYDLSDVYLDHPKLSFEERLDHAERLTQQALSINPNERAY 205 D AI+ Y ++ F + ++ L + + L Q+ ++ + Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLL---QKGELAEAESGLFLAQELIADKTEFKEL 143 Query: 206 RFR 208 R Sbjct: 144 STR 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.1 bits (86), Expect = 6e-04 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 26/148 (17%) Query: 1113 ASDFLVDTRDKDFDLEKELETIVGLTDIKDFVRSLEKQLSAEQLRQSAGIK------NRV 1166 A D+L D +L + + + + Q + +SA ++ R+ Sbjct: 98 AYDYLPKPFDLT-ELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156 Query: 1167 SQ-NLNMIFTGNPGTGKTTVARVVGDLLKRMGILKSGHFVEVDRGGL------------- 1212 Q +L ++ TG GTGK VAR + D KR ++G FV ++ + Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKR----RNGPFVAINMAAIPRDLIESELFGHE 212 Query: 1213 VGRYVGETAPKTTDKFMSALGGILFIDE 1240 G + G T +F A GG LF+DE Sbjct: 213 KGAFTGAQTRS-TGRFEQAEGGTLFLDE 239
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 141 bits (356), Expect = 1e-41 Identities = 70/327 (21%), Positives = 135/327 (41%), Gaps = 34/327 (10%) Query: 14 SAVVASSALALSTPAAYAQTTSQVVTDIGQNAKTHTSYNTFNNDQTDNMTMSLKVT--FI 71 + + S L+ P + DIG+ + + ++ ++ + F+ Sbjct: 9 TTLSVSLLAPLANPLLENAKAANDTEDIGKGSDI-EIIKRTEDKTSNKWGVTQNIQFDFV 67 Query: 72 DDPSADKQIAVINTTGSFLKANPTISSAPIDNYPIPGASATLRYPSQYDIAFNLQDNSAR 131 D +K ++ G F+ + T NY +R+P QY+I D Sbjct: 68 KDKKYNKDALILKMQG-FISSRTTYY-----NYKKTNHVKAMRWPFQYNIGLKTNDKYVS 121 Query: 132 FFNVAPTNAVEETTVTSSVSYQLGGSVKASATPNGPSAEAGATGQVTWSDSVSYKQTSYK 191 N P N +E T V+ ++ Y +GG+ +++ + G G +S S+SY Q +Y Sbjct: 122 LINYLPKNKIESTNVSQTLGYNIGGNFQSAPS-------LGGNGSFNYSKSISYTQQNYV 174 Query: 192 TNLIDQTNKNVKWNVFFNGYNNQNWGIYTRDSYHSLYGNQLFMYSRTYLYESDAKGNLIP 251 + + Q +K+V W V N + ++ S + + LF+ + + D + +P Sbjct: 175 SEVEQQNSKSVLWGVKANSFATESG-------QKSAFDSDLFVGYKP--HSKDPRDYFVP 225 Query: 252 MDQLPALTNSGFSPGMIAVVISEKN-TDQSNLQVAYTK-----HADDYQLRPGYTFGTAN 305 +LP L SGF+P IA V EK +D S ++ Y + HA G ++ + Sbjct: 226 DSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGH 285 Query: 306 WVGNNVKDVDQKTFNKSFTLDWKNKKL 332 V N + + + + ++WK ++ Sbjct: 286 RVHNAFVN---RNYTVKYEVNWKTHEI 309
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.9 bits (111), Expect = 6e-09 Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 1 MEKIDRRIIKSQNAIQSAFIEMLITDGFDEITVKNITEKANIGRKTFYLHYLDKYNLLDK 60 K + +++ I + + G ++ I + A + R Y H+ DK +L + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 IVDDHLDQLKEI 72 I + + E+ Sbjct: 62 IWELSESNIGEL 73
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.1 bits (117), Expect = 1e-09 Identities = 15/79 (18%), Positives = 32/79 (40%) Query: 4 VLIIDDHMAVGMGTKALIETEDICADVLFDSAEYLSCITKKKYDVYLVDLFMPNLNGLEV 63 +L+ DD A+ + + ++A I D+ + D+ MP+ N ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 TKGILKHDPDAAIIIYTGF 82 I K PD +++ + Sbjct: 66 LPRIKKARPDLPVLVMSAQ 84
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 35.6 bits (81), Expect = 4e-04 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 6/108 (5%) Query: 153 GRYAYAEGLHSHAEGTASHAEGLLTHAKGSFSHAEGSKTKATGHSSHSEGSETTASGAYS 212 G A A+G+HS A G + A A G+ S A G + A G S + G GA S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 213 HAEGKHTIALGEAAHAEGTATIANGFSSHAEGNHT----STAHFAGSH 256 A+ K +A+G A T +A GF+S A+ ++ ++H A +H Sbjct: 122 TAQ-KDGVAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANH 167
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 191 bits (486), Expect = 1e-60 Identities = 78/332 (23%), Positives = 142/332 (42%), Gaps = 26/332 (7%) Query: 1 MNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT--YSGNLNNVK-SIQDHPNYYFVK 57 M LVTG AGFIG + +L+ ++++ D L Y +L + + P + F K Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLE--AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHK 58 Query: 58 GEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPH 117 ++ + E + + + + V S+ENP + D+N+ G + +LE + Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 118 IKLVQVSTDEVYGSLGKTGRFTEETPLS-PNSPYSSSKASADMIALSYYKTYQLPVIVTR 176 L+ S+ VYG L + F+ + + P S Y+++K + +++A +Y Y LP R Sbjct: 119 QHLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 177 CSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRI- 235 YGP+ P+ + LEGK + +Y G RD+ ++ D AI + Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHA 237 Query: 236 -----------------GEVYNIGGNNEKTNIDVVEQIITLLGKTEKDIEYVTDRLGHDR 278 VYNIG ++ +D ++ + LG E + + G Sbjct: 238 DTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI-EAKKNMLPLQPGDVL 296 Query: 279 RYAIDAEKMKNEFDWEPKYTFEQGLQETVQWY 310 + D + + + P+ T + G++ V WY Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 2e-07 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 36/199 (18%) Query: 4 RIIITGANGQLGKQLQEEL--NPEE----------YDIYPFDKKL------------LDI 39 + ++TGA G +G + + L + YD+ +L +D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 40 TNISKVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYRINAIGARNVAVASQLVGAK-L 98 + + + + V + + N G N+ + + L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 99 VYISTDYVFQGDRPEGYDEFHNPA-PINIYGASKYAGEQFVKELHNKYFIVRTSW----L 153 +Y S+ V+ +R + + P+++Y A+K A E + Y + T + Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 154 YGKYGN------NFVKTMM 166 YG +G F K M+ Sbjct: 182 YGPWGRPDMALFKFTKAML 200
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.8 bits (147), Expect = 3e-13 Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 19/259 (7%) Query: 4 LQGKTFVVMGVANQRSIAWGIARSLHNAGAKLI-FTYAGERLERNVRELADTLEGQESLV 62 ++GK + G A + I +AR+L + GA + Y E+LE+ V L E + + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL--KAEARHAEA 61 Query: 63 LPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDDLKGEFVDTSRDGFLLAQNISA 122 P DV + + I++E+G I + + G S + + ++++ Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNS 117 Query: 123 FSLTAVAREAKKVMT--EGGNILTLTYLGGERVVKNYNVMGVAKASLEASVKYLANDLGQ 180 + +R K M G+I+T+ + +KA+ K L +L + Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 181 HGIRVNAISAGPIRT-----LSAKGVGDFNSILREIEE---RAPLRRTTTPEEVGDTAVF 232 + IR N +S G T L A G I +E PL++ P ++ D +F Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 233 LFSDLARGVTGENIHVDSG 251 L S A +T N+ VD G Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 8e-04 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%) Query: 17 IAQVSLEL--AAPKIKRIILTNFENEDRKEESNRNENVVSSAVEEVIEQEQEQQEEQQVE 74 +AQ E + T + E K E+ + + V + +QEQ + + Q E Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 75 GKIEEEEEEQVQEQQVQEQQEPVRTVP 101 E + ++E Q Q P Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQP 1171
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 18/98 (18%) Query: 318 LFQNAVD---AQGEKKLSIQITSYRLDNFVRITFTDNGTGIPSAIQEYIFDPFFSTKDSG 374 L +N + AQ + I + + + V + + G+ +E Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------S 310 Query: 375 TGLGLAVTKKIIQNHNG---TLKMTSNEDGTTFTISIP 409 TG GL ++ +Q G +K++ + + IP Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 56.1 bits (135), Expect = 1e-11 Identities = 23/71 (32%), Positives = 40/71 (56%) Query: 473 DTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELV 532 D ++ ++ + + G T TI+++L L + V LD EP+ I +N L+A GE+V Sbjct: 53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVV 112 Query: 533 NVDGFFGVKVT 543 V +GV++T Sbjct: 113 VVADKYGVRIT 123
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 97.0 bits (241), Expect = 9e-24 Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 14/249 (5%) Query: 4 SDYNTPLSGMLAAQMGLQTTRQNLSNIHTPGYVRQMVNYGSVGASNGHTPEQRIGYGVQT 63 S N +SG+ AAQ L T N+S+ + GY RQ ++ G +G GV Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAG--GWVGNGVYV 59 Query: 64 LGVDRITDEVKTKQFNDQLSQLSYYNYKNSVLSRVESMVGTTGKNSLSSLMDGFFNAFRE 123 GV R D T Q +Q S + +S++++M+ T+ SL++ M FF + + Sbjct: 60 SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTS-SLATQMQDFFTSLQT 118 Query: 124 VAKNPDQSNYYDTLISETGKFTSQVNKLAKNLDSVEAQTTEDIEAHVNEFNRLADSLAEA 183 + N + LI ++ +Q + L + Q I A V++ N A +A Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 184 NQKI----GQAGTQVPNQLLDERDRIVTEMSKYANIEVS---YESMNPNIASVRMNGVLT 236 N +I G PN LLD+RD++V+E+++ +EVS + N +A NG Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMA----NGYSL 234 Query: 237 VNGQDTYPL 245 V G L Sbjct: 235 VQGSTARQL 243 Score = 56.1 bits (135), Expect = 1e-10 Identities = 21/69 (30%), Positives = 42/69 (60%) Query: 362 KVASDKSEVNGYQKIHGDLLEGIQQEKMSIEGVNMEEEMVNLMAFQKYFVANSKAITTMN 421 + + + + G+++ + ++ SI GVN++EE NL FQ+Y++AN++ + T N Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 422 EVFDSLFSI 430 +FD+L +I Sbjct: 537 AIFDALINI 545
>FLAGELLIN#Flagellin signature. Length = 507 Score = 36.6 bits (84), Expect = 9e-05 Identities = 28/127 (22%), Positives = 60/127 (47%) Query: 1 MRVSTFQNANWAKNQLMDLNAQQQYHRNQVTSGKKNLLMSEDPLAASKSFAIQHSLANIE 60 ++T + +N L + +++SG + +D + + ++ + Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QMQKDIADSKNVLSQTENTLSGIVKSLTRADQLTIQALNGPNGEKELKAIGAEIDQILKQ 120 Q ++ D ++ TE L+ I +L R +L++QA NG N + +LK+I EI Q L++ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 VVYLANT 127 + ++N Sbjct: 122 IDRVSNQ 128
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.7 bits (69), Expect = 0.002 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 20 NTVSSNIANANTPGYKAQDVTFAEQMNK 47 NT S+NI++ N GY Q A+ + Sbjct: 19 NTASNNISSYNVAGYTRQTTIMAQANST 46
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.5 bits (71), Expect = 8e-04 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 5 INASGSGLTTARKWMEVTSNNIVNANTTAAPGADLYERRSVVLESNNSFA 54 IN + SGL A+ + SNNI + N Y R++ ++ NS Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAG------YTRQTTIMAQANSTL 47 Score = 29.2 bits (65), Expect = 0.006 Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 97 NVDVTAEMTNVMVAQKMYEANTSVLNANKKMLDKDLEI 134 V++ E N+ Q+ Y AN VL + D + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 35.4 bits (81), Expect = 5e-06 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 38 LEDMNQTQNNAQTAVYDLLTKGVG-ETHDVLIQQKKAESQMKTAALVRDNLIENYKSLIN 96 L+ ++ TQ A+T G +DV+ +KA M+ VR+ L+ Y+ +++ Sbjct: 41 LDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMS 100 Query: 97 MQI 99 MQ+ Sbjct: 101 MQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 165 bits (419), Expect = 6e-47 Identities = 99/540 (18%), Positives = 217/540 (40%), Gaps = 46/540 (8%) Query: 17 LVIGAALLAIVTGALLYFTLPDKYVVVYQNLNDADKQEITAELSKLGVDYQLAADG-SIR 75 +V G+A +AIV +L+ PD Y ++ NL+D D I A+L+++ + Y+ A +I Sbjct: 28 IVAGSAAVAIVVAMVLWAKTPD-YRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIE 86 Query: 76 VQKNDAPWVRKEMNGMGLPFNSKSGEEILLESSLGSSEQDKKMKQIVGTKKQLEQDIVRN 135 V + +R + GLP G E+L + G S+ +++ + +L + I Sbjct: 87 VPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTI-ET 145 Query: 136 FATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQLLTADQVAGIQQMISAAVPGV 195 V++A V + +P+ ++F E+ +A++TV ++ G+ L Q++ + ++S+AV G+ Sbjct: 146 LGPVKSARVHLAMPKP-SLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGL 204 Query: 196 KAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQIEGKLKQDIDATLMTMFKPNE 255 V+++D ++++ + + ++ + +E ++++ I+A L + Sbjct: 205 PPGNVTLVDQSGHLLTQSNTSGRDLNDAQ----LKFANDVESRIQRRIEAILSPIVGNGN 260 Query: 256 YKVNTKVSVNYDEVTRQSEKYG-DKGVLRSKQEQEESSTA-QEGADTKQGAGITANGEVP 313 +++ + E Y + ++ + + + Q GA G + + Sbjct: 261 VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPA 320 Query: 314 NYGT----------NNNQNGKIVYDNKNGNKI----------ENYEIDKTVETIKKHP-E 352 N QN + N N NYE+D+T+ K + + Sbjct: 321 PPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGD 380 Query: 353 LTKTNVVVWVDNDTLVKRRI------DMTTFKEAIGTAAGLQADPNGNFTNGQVNVVTVQ 406 + + +V V V+ TL + M ++ A G +NVV Sbjct: 381 IERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDK-----RGDTLNVVNSP 435 Query: 407 FDQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFLLARRKRKKEEEEYEEYLAEDE 466 F + P ++ L + + W L + R + EE A E Sbjct: 436 FSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQE 495 Query: 467 VAASSESIMEIPEEKI----VPEPKPEPEQPKEPTLDEQVQDATKEHVEGTAKVIKKWLN 522 A + E E ++ + + ++ + +++++ + A VI++W++ Sbjct: 496 QAQVRQETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMS 555
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 206 bits (525), Expect = 3e-66 Identities = 114/335 (34%), Positives = 194/335 (57%), Gaps = 5/335 (1%) Query: 2 LDEISSKEKAAILIRTLDEEVAAKVIEYMTAEEKEVLLREIAKFRVYKPETLENVLGEFL 61 + ++ K+KAAIL+ ++ E+++KV +Y++ EE E L EIAK E +NVL EF Sbjct: 12 VSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFK 71 Query: 62 YELNVKELNLVTPDKEYIRRIF-KNMPEDELEKLLEDLWYN-KDNPFEFLNSLTDLEPLL 119 EL + + + +Y R + K++ + ++ +L + PFEF+ D +L Sbjct: 72 -ELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRA-DPANIL 129 Query: 120 TVLNDESPQTIAIIASYIKPQLASQLIERLPDHKRVETVMGIAKLEQVDGELINQIGELL 179 + E PQTIA+I SY+ PQ AS ++ LP + IA +++ E++ ++ +L Sbjct: 130 NFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVL 189 Query: 180 KAKLNNMAFSAINKTDGLKTIVNILNNVSRGVEKTVFQKLDEVDYELSERIKENMFVFED 239 + KL +++ G+ +V I+N R EK + + L+E D EL+E IK+ MFVFED Sbjct: 190 EKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFED 249 Query: 240 LLGLEDLALRRVLEEITDNGVIAKALKIAKEEIKEKLFTCMSSNRKEMILEELDGLGPLK 299 ++ L+D +++RVL EI D +AKALK ++EK+F MS M+ E+++ LGP + Sbjct: 250 IVLLDDRSIQRVLREI-DGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTR 308 Query: 300 MTDAEKAQQMITGTVKKLEKEGRIIVQRGEEDVLI 334 D E++QQ I ++KLE++G I++ RG E+ ++ Sbjct: 309 RKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 27.8 bits (61), Expect = 0.031 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 14/153 (9%) Query: 28 IPIHVEEEIQVDHEELLAQQQSLHVELNQLRQEQQILERECQQLLHDQ----------EQ 77 +PI EE ++ E +QQ +++ Q Q E +Q H Q EQ Sbjct: 23 VPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQ 82 Query: 78 FQMHVQQQMKEIESARQQFQKEQQETAYEWTELLWDQSFQLAEKIVNQAV-DTRLLDVLP 136 + Q I + QQ E Q T ++ + Q+A + Q + T +D Sbjct: 83 GLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSA 142 Query: 137 ILTGIVQTL---PTSFEKLVITVHPETFERIQE 166 ++ I Q L P K + VHP+ +R+ + Sbjct: 143 LIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDD 175
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.026 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 19 PPQKEKGLEVQS-KSEDSSFDHAMRMENKKRPKTEKTKREDAPEDRKENILSKKPETKEE 77 Q+ K +E + +++ + + K T+ + + E ++ ETKE Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 78 PSVKKEEKKETE 89 +V+KEEK + E Sbjct: 1104 ATVEKEEKAKVE 1115
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.9 bits (98), Expect = 3e-06 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%) Query: 5 LYTSITGMNATQNALSVTSNNIANAQTVGYKKQKAMFDDLLYNNSIGAKGDDRYAGTNPK 64 + +++G+NA Q AL+ SNNI++ GY +Q I A+ + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT----------IMAQANSTLGAG--G 51 Query: 65 SIGNGVKMSG 74 +GNGV +SG Sbjct: 52 WVGNGVYVSG 61 Score = 36.5 bits (84), Expect = 2e-04 Identities = 10/42 (23%), Positives = 27/42 (64%) Query: 364 QEGANVDLSVEFVDLMLYQRGFQGNAKVIKISDEVLNEVVNL 405 Q + V+L E+ +L +Q+ + NA+V++ ++ + + ++N+ Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.7 bits (111), Expect = 6e-08 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 176 IYIAEDSAMLRQILEETLSSAGYTKMNFFSNGAEALAQIEKLAKEQGEKMFEHIHMLITD 235 I +A+D A +R +L + LS AGY + A I +++TD Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSN-AATLWRWIAA----------GDGDLVVTD 54 Query: 236 IEMPKMDGHHLTKVIKDSEIMNRLPVVIFSSLITNELFHKGEAVGANAQVSKP-DIQELI 294 + MP + L IK + LPV++ S+ T K GA + KP D+ ELI Sbjct: 55 VVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 295 GLVDK 299 G++ + Sbjct: 113 GIIGR 117
>FLAGELLIN#Flagellin signature. Length = 507 Score = 124 bits (311), Expect = 1e-34 Identities = 50/140 (35%), Positives = 81/140 (57%) Query: 1 MRIGTNVLSMNARQSLYENEKRMNVAMEHLATGKKLNHASDNPANVAIVTRMHARASGMR 60 I TN LS+ + +L +++ ++ A+E L++G ++N A D+ A AI R + G+ Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 VAIRNNEDAISMLRTAEAALQTVTNVLQRMRDLAVQSANGTNLNKNRNSLNNEFQSLTEQ 120 A RN D IS+ +T E AL + N LQR+R+L+VQ+ NGTN + + S+ +E Q E+ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 IGYIDETTEFNDLSVFDGQN 140 I + T+FN + V N Sbjct: 122 IDRVSNQTQFNGVKVLSQDN 141 Score = 91.6 bits (227), Expect = 4e-23 Identities = 39/100 (39%), Positives = 57/100 (57%) Query: 166 DINISTEKEARAAIRKIEEALQNVSLHRADLGAMINRLQFNIENLNSQSTALTDAASRIE 225 + + +K + I+ AL V R+ LGA+ NR I NL + T L A SRIE Sbjct: 408 EDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIE 467 Query: 226 DADMAQEMSDFLKYKLLTEVALSIVSQANQIPQMVSKLLQ 265 DAD A E+S+ K ++L + S+++QANQ+PQ V LL+ Sbjct: 468 DADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 179 bits (454), Expect = 9e-53 Identities = 137/509 (26%), Positives = 220/509 (43%), Gaps = 47/509 (9%) Query: 1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLG 60 INTN S+ TQ + ++Q+ +S+A++RLSSG RIN+A DDAAG AIA R + GL Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 VAANNTQDGMALIRTADSAMNSVSNILLRMRDIANQSANGTNTDKNQAALQKEFGELQKQ 120 A+ N DG+++ +T + A+N ++N L R+R+++ Q+ NGTN+D + ++Q E + ++ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 IDYIAGNTQFNDKNLLDGSNPSISIQTLDSADQSKQISIDLKSATLEALGIKDL-TVGAT 179 ID ++ TQFN +L N + IQ + + I+IDL+ +++LG+ G Sbjct: 122 IDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGE--TITIDLQKIDVKSLGLDGFNVNGPK 178 Query: 180 ENTLAKATITAKDAFDAAKDASDAAKKEIDAAAKDTPSKNDAQLAKEYIEAKATLATLKP 239 E T+ + K+ A A K +D + + A + + A L Sbjct: 179 EATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238 Query: 240 TDATYAAKAAELDAATTALNDNAKVLVDGYEKKLTT---------TKTKEAEYTAAKEQS 290 DA + + G K T T + + Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298 Query: 291 TKSTAAADLVTKYETAKSNALGNDIAKEYLEAKTAYEANKNDISSKSRFEAAETELNKDI 350 +T + VT + N A +K Y + N + E+ D+ Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDL 358 Query: 351 TANKAAKVLVETYEKAKTAG----------------------------------TTEKSL 376 AN A K + + + Sbjct: 359 EANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTA 418 Query: 377 VAVDKIDEALKTIADNRATLGATLNRLDFNVNNLKSQSASMASAASQIEDADMAKEMSEM 436 + ID AL + R++LGA NR D + NL + ++ SA S+IEDAD A E+S M Sbjct: 419 NPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNM 478 Query: 437 TKFKILNEAGISMLSQANQTPQMVSKLLQ 465 +K +IL +AG S+L+QANQ PQ V LL+ Sbjct: 479 SKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 41.1 bits (96), Expect = 6e-08 Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 10 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 69 + +P+ + F + + +L + + L L + + V +M +G G+++ N Sbjct: 228 NQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDT 287 Query: 70 MYVEIVE 76 + VEI E Sbjct: 288 LGVEIHE 294
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 141 bits (357), Expect = 1e-41 Identities = 90/329 (27%), Positives = 165/329 (50%), Gaps = 10/329 (3%) Query: 4 DKLSQEQIDALLKAVNEGEEMPAFAQEAGKQDKFQEYDFNRPEKFGVEHLRSLQAIASTF 63 + LSQ++ID LL A++ G+ A+ K YDF RP+KF E +R+L + TF Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 64 GKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVIDLGLPELGEIVIEI 123 + T+ +LSA++R + + ++V+Q+ + E++ +P L VI + P G V+E+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTY-EEFIRSIPTPSTL-AVITMD-PLKGNAVLEV 119 Query: 124 DLAFVIYIHECWLGGDSKRNFTMRRPLTAFEFLTLDNIFALLCKNLEQSFESVVAIKPTF 183 D + I + GG + ++R LT E ++ + + N+ +S+ V+ ++P Sbjct: 120 DPSITFSIIDRLFGGT-GQAAKVQRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRL 178 Query: 184 VTTETDPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSVEEIMDKLTSENIVEHS 243 ET+P +I S+++ L+ + K + IP++++E I+ KL+S+ S Sbjct: 179 GQIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFW--FS 236 Query: 244 SDKRKK---YTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDIIPLH-TKVSDELL 299 S +R Y + K++ V V +G ++++ +I + GDII LH T V D + Sbjct: 237 SVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFV 296 Query: 300 GFVDGKHKFNCFIGKDGTRKALLFKSFVE 328 + + KF C G G + A +E Sbjct: 297 LSIGNRKKFLCQPGVVGKKIAAQILERIE 325
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 60.3 bits (146), Expect = 6e-15 Identities = 23/94 (24%), Positives = 53/94 (56%) Query: 13 LEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEVEKNLGHKVD 72 ++ G + ID + DI ++L V+LG+T +T+ ++ +L G V+ ++ G +D Sbjct: 39 FQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLD 98 Query: 73 VYLSNMKVGIGEAIVMDEKFGIIISEIEADKKQA 106 + ++ + GE +V+ +K+G+ I++I ++ Sbjct: 99 ILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 165 bits (418), Expect = 1e-52 Identities = 75/239 (31%), Positives = 136/239 (56%), Gaps = 2/239 (0%) Query: 14 FVFSIVFSIIFVNPAYAAQNGFINFENGKEFTSN--SSVQLFALVTLLSLSSSIVLLFTH 71 + + + P AQ I + + VQ +T L+ +I+L+ T Sbjct: 4 LLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTS 63 Query: 72 FTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITV 131 FT +IV G+ R LG + PPNQVL+GLALFL+ F M PV+ ++ D + P ++EKI++ Sbjct: 64 FTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISM 123 Query: 132 SQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGL 191 +A E A ++E+M + T + DL + ++ + + + + L+P++ ++++ Sbjct: 124 QEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAF 183 Query: 192 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 G I++ F+ IDL+I+++LM LGMMMVPP ++LPFK+++FV + G+ +V + ++ Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQS 242
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 41.7 bits (98), Expect = 1e-08 Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 4 SPIIDIFQTFFYKGVMILMPVAGVSMIVVIIIAVIMAMMQIQEQTLTFLPKMASIVLVII 63 ++ Y +++ V+ I+ +++ + + Q+QEQTL F K+ + L + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 ILGPWMFQELTTLILDLFDKI 84 +L W + L + + Sbjct: 62 LLSGWYGEVLLSYGRQVIFLA 82
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 97.1 bits (242), Expect = 3e-26 Identities = 51/233 (21%), Positives = 114/233 (48%), Gaps = 1/233 (0%) Query: 10 FFAFCRITSFLYFLPFFSGRSIPAMAKVTVGLALSITVADQVDVSHIKTTWDVAA-YAGT 68 F+ R+ + + P S RS+P K+ + + ++ +A + + + A A Sbjct: 17 FWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFFALWLAVQ 76 Query: 69 QIVIGLSLSKIVEMLWNIPKMAGHILDFDIGLSQASLFDVNAGSQSTLLSTIFDIFFLII 128 QI+IG++L ++ + + AG I+ +GLS A+ D + +L+ I D+ L++ Sbjct: 77 QILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDMLALLL 136 Query: 129 FISLGGINYFVATILKSFQYTEAISKLLTTSFLDSLLATLLFAITSAVEIALPLMGSLFI 188 F++ G + ++ ++ +F + L ++ +L + + +ALPL+ L Sbjct: 137 FLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLT 196 Query: 189 INFVLILIAKNAPQLNVFMNAYVIKITCGILFIAMSVPMLGYVFKNMTDVLLE 241 +N L L+ + APQL++F+ + + +T GI +A +P++ +++ + Sbjct: 197 LNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 32.0 bits (72), Expect = 0.004 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 43/211 (20%) Query: 195 AQLLYRAMQIKKDVPAEQPSYINLDVTLPSNVTAQEID-----NYIQRFHPDSPLVGIGQ 249 A+++ + M ++ +P E + L + V Q + D L G + Sbjct: 91 AEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDSK 150 Query: 250 DFI--------KAQNEYGVNALYLAAHAILESGYGKSEIAYRK----HNLFGLRA----- 292 F+ A + GV + A A LESG+G+ +I +NLFG++A Sbjct: 151 AFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWK 210 Query: 293 -----------YDRDPFAYAKYLPSYGLSISYNADYVKKNYLEEGARYF--------KGY 333 + + Y + +DYV L RY + Sbjct: 211 GPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVG--LLTRNPRYAAVTTAASAEQG 268 Query: 334 TLPAMNVMYSTDTAWAGKIANIMERIKPFNK 364 + Y+TD +A K+ N+++++K + Sbjct: 269 AQALQDAGYATDPHYARKLTNMIQQMKSISD 299
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.8 bits (119), Expect = 9e-09 Identities = 63/333 (18%), Positives = 121/333 (36%), Gaps = 27/333 (8%) Query: 21 VKASPHFKFLWIGQLLSTLGSSITMVILPVVVYSLTGSTVV---MGMTMAMYMLPNILAL 77 +K + + L +G + M +LP ++ L S V G+ +A+Y L Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 78 PFAGLVVDRMDRVKVMLFTDIIRCILMLLLATLIFMDVLTIPLLYVLVA--LYGLMEGIF 135 P G + DR R V+L + L A + + + T P L+VL + + G Sbjct: 61 PVLGALSDRFGRRPVLLVS--------LAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT 112 Query: 136 QPAYAAVRAKVFVPEIRNAANALTQMSNQGIRLIGPALGGLIVSVASAG---IGFGLDAV 192 A A + + R + GP LGGL+ + L+ + Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGL 172 Query: 193 TYLLSFFCLLFLREIKFKKVKSIEKKKVDYKQEFMEGVFVLKSHPWLWITILVFSFINIC 252 +L F L E + + + ++ ++ F + L + + Sbjct: 173 NFLTGCF---LLPESHKGERRPLRREALNPLASF-RWARGMTVVAALMAVFFIMQLVGQV 228 Query: 253 YAGIIVVLIPWLFNVHHHFEAYVYGLGMASSGVGAVVAALIFGGR--ERWYKRGVLAYGG 310 A + V+ F H++A G+ +A+ G+ +A + G R +R L G Sbjct: 229 PAALWVIFGEDRF----HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-G 283 Query: 311 VLISGCALLIMPFITWAPVLIILMAIEGFGMMI 343 ++ G +++ F T + +M + G + Sbjct: 284 MIADGTGYILLAFATRGWMAFPIMVLLASGGIG 316
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 5e-04 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 33 IVFVGPSGCGKSTTLRMIAGLEDISDGSFYIDGKLMNDVAPKDRDIAMVFQNYALY 88 +V G G GKST + + GL+ SD F I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 3e-05 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 222 DKELIESIKVFFQCNLNVSLAAKQLYLHRNTLQYRIDKFIEKTGLNIKTFE 272 + LI N AA L L+RNTL+ +I + G+++ Sbjct: 437 EYPLIL--AALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVYRSS 481
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.5 bits (89), Expect = 1e-04 Identities = 65/423 (15%), Positives = 139/423 (32%), Gaps = 13/423 (3%) Query: 364 KYEAVKNKEPERENAKKLVQRLEELQPIIASLAEKQLNLQNAEIQLGKLKESMQNLDRQL 423 E +E A K L+ + L+ L++ +L E + N +L Sbjct: 45 TRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKD---HNDELTEELSNAKEKL 101 Query: 424 EEHTNQKQLMSGELQQLERALERYVDKVEELTNMREDAKVLKQAYDVWQEKQKFEQEKET 483 ++ + ++Q+LE +E M + + EK K Sbjct: 102 RKNDKSLSEKASKIQELEARKADLEKALEGA--MNFSTADSAKIKTLEAEKAALAARKAD 159 Query: 484 AFTKMQETVRAYENMERRWLSEQAGILALHLHDGESCPVCGSTNHPKKASEQSDAINEKE 543 ++ + + + +A AL E + A E E Sbjct: 160 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 219 Query: 544 LNDLRDKKNIAEKLHVQVEEKWNFYHLQYEQIIEEVKKRGYQSEELVETYSALVQKGKQL 603 L +K EK + + + E + EL + + Sbjct: 220 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 279 Query: 604 ATEVNTLKASEETRKQTAVKIKSIEEKVDALQKQKHEVETEQHRIEMDCMQLRTSYEHDK 663 + ++ TL+A + + ++ + ++A ++ + E Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Query: 664 KNIPENLQTVQAWKVQFDQAMHELKLMEDEWKKVQEAYQHWQNENIRIQAEQEGASNQFE 723 K + Q+++ D + K +E E +K++E + + ++ + + + Sbjct: 340 KISEASRQSLRR---DLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS----R 392 Query: 724 SAKLKKEETFTRFMKELEQSGFTNQITYKEAKLSDAEMDMLQKEIQSYYSSL-EVLAKQI 782 AK + E+ +L N+ + KL++ E LQ ++++ +L E LAKQ Sbjct: 393 EAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQA 452 Query: 783 EEL 785 EEL Sbjct: 453 EEL 455 Score = 35.8 bits (82), Expect = 0.001 Identities = 42/317 (13%), Positives = 95/317 (29%), Gaps = 35/317 (11%) Query: 327 EQWHEEAMENEQKSESLLKQIIAKKENIMNNFELAQEKYEAVKNKEPERENAKKLVQRLE 386 E+ E A + E ++ +L + N + E E + N + + K + Sbjct: 53 EKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKA 112 Query: 387 -ELQPIIASLAEKQLNLQNAEIQLGKLKESMQNLDRQLEEHTNQKQLMSGELQQLERALE 445 ++Q + A A+ + L+ A ++ L+ + +K + L+ Sbjct: 113 SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 172 Query: 446 RYVDKVEELTNMREDAKVLKQAYDVWQEKQKFEQEKETAFTKMQETVRAYENMERRWLSE 505 K++ L EK E + ++ + + + Sbjct: 173 ADSAKIKTLEA----------------EKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 506 QAGILALHLHDGESCPVCGSTNHPKKASEQSDAINEKELNDLRDKKNIAEKLHVQVEEKW 565 +A AL K E++ K E +E + Sbjct: 217 EAEKAAL--------------AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ 262 Query: 566 NFYHLQYEQIIEEVKKRGYQSEELVETYSALVQKGKQLATEVNTLKASEETRKQ----TA 621 E + + + L +AL + L + L A+ ++ ++ + Sbjct: 263 AELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASR 322 Query: 622 VKIKSIEEKVDALQKQK 638 K +E + L++Q Sbjct: 323 EAKKQLEAEHQKLEEQN 339 Score = 30.8 bits (69), Expect = 0.029 Identities = 54/392 (13%), Positives = 129/392 (32%), Gaps = 15/392 (3%) Query: 251 VYKAEVEQLQVEQDVQTKQLKDAETRFHAAKSVNEKFIDLQQKNEKYNTLQENRSVIEMK 310 +++ + L+ Q+ K + T ++ L+ N++ N +++ Sbjct: 44 ATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKE-KLR 102 Query: 311 EISFKRAEQAKRLLPFEQWHEEAMENEQKSESLLKQIIAKKENIMNNFELAQEKYEAVKN 370 + +E+A ++ E + + + + + AK + + + ++ Sbjct: 103 KNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEK 162 Query: 371 KEPERENAKKLVQRLEELQPIIASLAEKQLNLQNAEIQLGKLKESMQNLDRQLEEHTNQK 430 N +++ + A A + E L +++ +K Sbjct: 163 ALEGAMNFST--ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 431 QLMSGELQQLERALERYVDKVEELTNMREDAKVLKQAYDVWQEKQKFEQEKETAFTKMQE 490 ++ LE+ALE ++ + + + + + + + E+ E A Sbjct: 221 AALAARKADLEKALEGAMNFSTADS--AKIKTLEAEKAALEARQAELEKALEGAMNFSTA 278 Query: 491 TVRAYENMERRWLSEQAGILALHLHDGESCPVCGSTNHPKKASEQSDAINEKELNDLRDK 550 + +E + +A L S AS ++ E E L ++ Sbjct: 279 DSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQ 338 Query: 551 KNIAEKLHVQVEEKWNFYHLQYEQIIEEVKKRGYQSEELVETYSALVQKGKQLATEVNTL 610 I+E + + E K+ + ++L E + L + L Sbjct: 339 NKISEASRQSLRRD-------LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD---L 388 Query: 611 KASEETRKQTAVKIKSIEEKVDALQKQKHEVE 642 AS E +KQ ++ K+ AL+K E+E Sbjct: 389 DASREAKKQVEKALEEANSKLAALEKLNKELE 420
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 27.0 bits (59), Expect = 0.030 Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 8/92 (8%) Query: 3 QNELLNEYMNLLLNMSGTFKLLSEKSSEFTHLEQHVVEYIAQQKVPVNLKMIASYLNIPK 62 Q E +++L+N SG++ ++ +S + + VV++ +Q ++ +M+A++ I Sbjct: 614 QQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIHRQMMAAHAAITL 673 Query: 63 QQLSVTVRNLEQNGYIVRKQDTVDKRAILISL 94 Q++S ++ + TVD +LI L Sbjct: 674 QEVSEFTDDM--------RNFTVDSIPLLIQL 697
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.0 bits (184), Expect = 5e-19 Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 20/182 (10%) Query: 1 MEQKQRPLGRPRQNKNTKSTKETILEVATRLFLTQNYQVVSMDEVAKVCGVTKATVYYYY 60 M +K + + T++ IL+VA RLF Q S+ E+AK GVT+ +Y+++ Sbjct: 1 MARKTKQEAQE--------TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHF 52 Query: 61 STKADLFTATMIQMMVRIRENMFQILS-TNKTLKERLLDFAKVYLHATMDIDMKNFMKDA 119 K+DLF+ I E + + L + L +T+ + + + + Sbjct: 53 KDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEI 112 Query: 120 KLSLSE--------EQLKQLKHAEDNMYEVLEKALDNAMQIGEIPKG-NAKFVAHAFVSL 170 E +Q ++ E Y+ +E+ L + ++ +P + A Sbjct: 113 IFHKCEFVGEMAVVQQAQRNLCLE--SYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170 Query: 171 LS 172 +S Sbjct: 171 IS 172
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 52.9 bits (127), Expect = 4e-09 Identities = 38/232 (16%), Positives = 86/232 (37%), Gaps = 25/232 (10%) Query: 203 LLVATVLLVLVLLILLYRSPILAILPLLVVGFAYGIISPTLGFLADHGWIKVDAQAISIM 262 L A +L+ LV+ + L ++ ++P + V + T LA G+ +I+ + Sbjct: 344 LFEAIMLVFLVMYLFL-QNMRATLIPTIAVPVV---LLGTFAILAAFGY------SINTL 393 Query: 263 T----VLLFGAGTDYCLFLISRYREYLLEEESKYK-ALQLAIKASGGAIIMSALTVVLGL 317 T VL G D + ++ ++E++ K A + ++ GA++ A+ + Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 318 GTLLL--AHYGAFHR-FAVPFSVAVFIMGIAALTILPALLLIFGRAAFFPFVPRTTSMNE 374 + GA +R F++ A+ + + AL + PAL + P + +E Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK-------PVSAEHHE 506 Query: 375 ELARRKKKVVKVKKSKGAFSKKLGDVVVRRPWTIIMLTVFVLGGLASFVPRI 426 ++ +++ ++ G+ R+ Sbjct: 507 NKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRL 558 Score = 37.9 bits (88), Expect = 2e-04 Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 9/161 (5%) Query: 203 LLVATVLLVLVLLILLYRSPILAILPLLVVGFAYGIISPTLGFLADHGWIKVDAQAISIM 262 L+ + ++V + L LY S + + +LVV I+ L + V + Sbjct: 875 LVAISFVVVFLCLAALYESWSIPVSVMLVVPLG--IVGVLLAATLFNQKNDVYFM---VG 929 Query: 263 TVLLFGAGTDYCLFLISRYREYLLEE-ESKYKALQLAIKASGGAIIMSALTVVLGLGTLL 321 + G + ++ ++ + +E + +A +A++ I+M++L +LG+ L Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 322 LAH---YGAFHRFAVPFSVAVFIMGIAALTILPALLLIFGR 359 +++ GA + + + + A+ +P ++ R Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.6 bits (105), Expect = 1e-07 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 49 YSSVEMMRYSIEELD--CYKVIMDGKIIGGIIVTISGKSYGRIDRIFVEPVYQGKGIGSY 106 Y +M +EE + ++ IG I + + Y I+ I V Y+ KG+G+ Sbjct: 50 YEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTA 109 Query: 107 VIKLIEE---EYPSIRIWDLETSSRQLNNHHFYKKMGY 141 ++ E E + LET ++ HFY K + Sbjct: 110 LLHKAIEWAKENHFCGLM-LETQDINISACHFYAKHHF 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 2e-06 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%) Query: 54 FVAEYDGEVVGFVGLTQSPGRRSHSGDLFIGVDSEYHNKGIGKALLTKMLDLADNWLMLE 113 F+ + +G + + + + D I V +Y KG+G AL L A W E Sbjct: 68 FLYYLENNCIGRIKIRSNWNGYALIED--IAVAKDYRKKGVGTAL----LHKAIEW-AKE 120 Query: 114 RVELGV-LET---NPKAKSLYEKFGFVEEGV 140 G+ LET N A Y K F+ V Sbjct: 121 NHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.036 Identities = 20/154 (12%), Positives = 62/154 (40%), Gaps = 5/154 (3%) Query: 99 TINRFRSERMKDVIYETFFSLIDLLKQEGLVKLEDYFLDGTKIEANANRYTFVWKKSTEK 158 + + R + + I + L + + + + ++ + W+ + Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSE--EEVLRLTSLIKEQFSTWQNQKYQ 204 Query: 159 YDQKLDEKYQKIVATIEQASEDDQKAELEEEQMKDTCSVTSEKIKQTIQTLE---KRLQD 215 + LD+K + + + + + + + +E+ ++ D S+ ++ LE K ++ Sbjct: 205 KELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA 264 Query: 216 EPKNKTMKKAKRQLENDLLPRKIKYEAHKETFQE 249 + + K Q+E+++L K +Y+ + F+ Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 29.9 bits (67), Expect = 0.011 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 8/100 (8%) Query: 156 TGVTGATGATGPTGVIGPITTTNLLFYTFSDGEK-----LIYTDSDGLAQYGTTHILSPD 210 +G+TG G P P+ Y ++G+ + YTD+ G + T +L Sbjct: 112 SGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT-FTKTFVLKRG 170 Query: 211 EVS-YINLFINGILQPQPLYQVSTGQLTLLDNQPPSQGSS 249 + + +N + +PL S GQL PP + Sbjct: 171 DYAVNVNYNVQN-AGEKPLEISSFGQLKQSITLPPHLDTG 209
>cloacin#Cloacin signature. Length = 551 Score = 34.7 bits (79), Expect = 6e-04 Identities = 40/157 (25%), Positives = 53/157 (33%), Gaps = 22/157 (14%) Query: 150 GGGPTGPTGPTGPGGGATGPTGPTGPGGGATGPTGATGPTGATGPTGATGPAGTGGATGL 209 G G TG G G G GGGA+ +G + G +G GG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG---- 59 Query: 210 TGATGPTGATGLTGATGLTGPTGATGLTGPTGATGPTGATGLTGATGLTGATGATGGGAI 269 G G G +G G +G G A A G + GG Sbjct: 60 -SGHGNGGGNGNSG--------------GGSGTGGNLSAVAAPVAFGFPALSTPGAGGLA 104 Query: 270 IPFASGTTPAALVNALVANTGTLLGFGFSQPGVALTG 306 + ++G AA+ + + A G F F GVAL G Sbjct: 105 VSISAGALSAAIADIMAALKGP---FKFGLWGVALYG 138 Score = 32.4 bits (73), Expect = 0.004 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 148 TPGGGPTGPTGPTGPGGGATGP--TGPTGPGGGATGPTGATGPTGATGPTGATGPAGTGG 205 T G GPTG GG + G + P GG +G G G G G +GG Sbjct: 16 TSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNG--NSGG 73 Query: 206 ATGLTGATGPTGATGLTGATGLTGPTGATGL 236 +G G A G L+ P GA GL Sbjct: 74 GSGTGGNLSAVAAPVAFGFPALSTP-GAGGL 103
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 30.0 bits (67), Expect = 0.012 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 11/72 (15%) Query: 112 GILTIGGTGTICLGKKGEVYEYSGGW-GHILGDAGSGYWIGLQALKRMANQLDQGIRLCP 170 ++ ++ G +VY W G I G G+ I Q + + N L + Sbjct: 8 ALICATLATSLWAGASTKVY----AWDGKIDG-TGTHAMIVTQGVSILENDLSKNE---- 58 Query: 171 LSLRIQDEFQLL 182 ++ ++L Sbjct: 59 -PESVRKNLEIL 69
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 286 bits (734), Expect = 1e-95 Identities = 121/384 (31%), Positives = 194/384 (50%), Gaps = 10/384 (2%) Query: 20 ALLFGLISVFLCGIGFSIIMPVVPFLVQPYTSNPEEQALVVTLLTSVYAACVFLAAPVLG 79 L+ L +V L +G +IMPV+P L++ + + A LL ++YA F APVLG Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILL-ALYALMQFACAPVLG 64 Query: 80 ALSDKYGRRPLLLICLFGSAIGYLVFGIGGALWVLFAGRIIEGITGGSISTIFAYFADII 139 ALSD++GRRP+LL+ L G+A+ Y + LWVL+ GRI+ GITG + + AY ADI Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 140 PQEQRTKYFGWVSAVVGAGTIIGPTLGGLLAKFGHSVPLYFGALITLINVLYGMKYMPES 199 ++R ++FG++SA G G + GP LGGL+ F P + A + +N L G +PES Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 200 LDKNNRLTEITFVRLNPFAQLANILSMKNLKWLLVSAFLLWIPNGSLQAIFTQFTMDTFN 259 + LNP A M + L+ F++ + A++ F D F+ Sbjct: 185 --HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFH 242 Query: 260 WQPALIGIMFSIMGFQDIISQAFIMPKLLIKLSDKQIAILGMVSEIIGYSFIAVSALFSL 319 W IGI + G ++QA I + +L +++ +LGM+++ GY +A + Sbjct: 243 WDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF---ATR 299 Query: 320 YPLLIVGMLLFGFGDSIFGPSFNGMLSKSVSSSEQGRIQGGSQSIQALARMIGPIIGGQT 379 + M+L G I P+ MLS+ V QG++QG ++ +L ++GP++ Sbjct: 300 GWMAFPIMVLLASGG-IGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Query: 380 YVSLGHAAPAFMGMILIVAAIVVL 403 Y + + G I A + L Sbjct: 359 Y---AASITTWNGWAWIAGAALYL 379
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.3 bits (73), Expect = 0.003 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 6/113 (5%) Query: 335 AGGSGLAITFVAAKDEKH------LEEIEKTLGAPLQREIIEQPKIKHVDENGKPVPKPA 388 A +++T V D + E + + V E KP PKP Sbjct: 40 APAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 99 Query: 389 PKKSDQYRQRDSREGSRSGSKGGRRNDSRNSSRNDSNRSFNKPSNKKSSAKQG 441 PK + +++ R+ S+ ++ +R S+ + S +S G Sbjct: 100 PKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 152
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.0 bits (171), Expect = 5e-17 Identities = 31/161 (19%), Positives = 70/161 (43%), Gaps = 9/161 (5%) Query: 8 EERRKEILERAERLFVTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEIIMRIIKE 67 +E R+ IL+ A RLF +G + T++ +I K G+ +G Y +FK K ++ E I + + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE-IWELSES 68 Query: 68 DVAKAKVIVSNPNIPVLEKLFRVLME---QSPKSGDVKDKMIE-QFHQPNNA-EMHQKSI 122 ++ + ++ + R ++ +S + + + ++E FH+ EM Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 123 VQSIIHLSPV--LAEILEQGIDEGVFSTPY-PQETIELLLS 160 Q + L + + L+ I+ + + ++ Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRG 169
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 2e-06 Identities = 61/351 (17%), Positives = 129/351 (36%), Gaps = 40/351 (11%) Query: 39 DITGRADIFAGLYAVTSIPFLLAPLGGAIADRFNRRNVMVIFDFINAAIVLSFIVLLFTG 98 D+T I LYA+ F AP+ GA++DRF RR +++ AA+ + ++ Sbjct: 40 DVTAHYGILLALYALMQ--FACAPVLGALSDRFGRR-PVLLVSLAGAAV--DYAIMATAP 94 Query: 99 SVSILSIGTIMFLLAIISAMYAPVVMASIPQLVPEKKLEQANGIVNGVQALSNIVAPVLG 158 + +L IG I +A I+ V A I + + + G ++ + PVLG Sbjct: 95 FLWVLYIGRI---VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG 151 Query: 159 GILYGIIGLKMLVIISCLAFFLSAILEMFITIPFIKRVQESHIIPTIVKDMKEGFIYVLK 218 G++ G + L+ + F+ +P + + + + + Sbjct: 152 GLM-GGFSPHAPFFAAAALNGLNFLTGCFL-LPESHKGERRPLRREALNPLASFRWARGM 209 Query: 219 QPFI--LKSMLLAALLNLILTPLFVV-GAPIIIRVTMESSHTLYGIGMGLIDFATIIGAL 275 + + L+ + L+V+ G +L G+ ++ A+ Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGI----LHSLAQAM 265 Query: 276 SIGFFAKKLQMKTLYYWMILIALLVIPMALSVTPFILNLGY------YPPFILFILSSIL 329 G A +L + L++ M T +IL +P +L I Sbjct: 266 ITGPVAARLGERR---------ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG 316 Query: 330 IAMIMTIVSIYVITVVQKKTPNENLGKVMAIITAVSQCMAPIGQVVYGFMF 380 + + ++S V E G++ + A++ + +G +++ ++ Sbjct: 317 MPALQAMLSRQV--------DEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 29.1 bits (65), Expect = 0.015 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 26/106 (24%) Query: 136 FVKDVNLVWNEISRVLKNRGILISGFTNP----------LLWIFDDNQEQKGILDVKHSI 185 FVKD +N+ + +LK +G + S T + W F N + +K + Sbjct: 66 FVKDKK--YNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYN------IGLKTND 117 Query: 186 PS-STLDYLPEDEVQDYVNSNQTIEYAHTLEDQIQGQIEAGLVISG 230 S ++YLP+ N ++ + TL I G ++ + G Sbjct: 118 KYVSLINYLPK-------NKIESTNVSQTLGYNIGGNFQSAPSLGG 156
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 55.6 bits (134), Expect = 1e-10 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 16/158 (10%) Query: 6 FIVIVTVLTLFCSIVVTSGSASAETVPVLDVEAGSAI---LVEANSGKILYEKNADESLA 62 + I+++L V + E + + + + + ++ SG+ L ADE Sbjct: 5 RLCIISLLATLPL-AVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFP 63 Query: 63 IASMTKMMSEYLVHEAVEKGKLKWDQKVKISEYAYTISQDRSLSNVPLEN---SGSYTVK 119 + S K++ V V+ G + ++K+ Q + P+ + TV Sbjct: 64 MMSTFKVVLCGAVLARVDAGDEQLERKI-------HYRQQDLVDYSPVSEKHLADGMTVG 116 Query: 120 ELYEAMAIYSANGATIALVEEIAGKEA--DFVKMMNDK 155 EL A S N A L+ + G F++ + D Sbjct: 117 ELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDN 154
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 380 bits (978), Expect = e-136 Identities = 95/263 (36%), Positives = 143/263 (54%), Gaps = 3/263 (1%) Query: 39 HKXQATHKEFSQLEKKFDAQLGVYAIDTGTNETI-AYRPNERFAFASTYKALAAGVLLQQ 97 H ++ E + ++G+ +D + T+ A+R +ERF ST+K + G +L + Sbjct: 20 HASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLAR 79 Query: 98 NSIDT--LNEVIKFTKEDLVDYSPITEKHIDTGMTLGEIAEAAVRYSDNTAGNILFHKIG 155 L I + ++DLVDYSP++EKH+ GMT+GE+ AA+ SDN+A N+L +G Sbjct: 80 VDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVG 139 Query: 156 GPKGYEKALRQMGDRVTMSDRFETELNEAIPGDIRDTSTAKAIATNLKDFTVGNALPDDK 215 GP G LRQ+GD VT DR+ETELNEA+PGD RDT+T ++A L+ L Sbjct: 140 GPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARS 199 Query: 216 RKVLTDWMKGNATGDKLIRAGVPTDWVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILS 275 ++ L WM + LIR+ +P W + DK+GAG G R +A++ P N+A I+ I Sbjct: 200 QRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVALLGPNNKAERIVVIYL 259 Query: 276 SKDEKEAIYDNQLIKEAAEVVID 298 NQ I +I+ Sbjct: 260 RDTPASMAERNQQIAGIGAALIE 282
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 7e-04 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 40 NEQQLEKYIESENTLAFKVIDEETQEVVGHISLGQIDNINKSARIGKVLVGDTKMRGRSM 99 ++ Y+E E AF E +G I + N N A I + V R + + Sbjct: 52 DDDMDVSYVEEEGKAAFLYYLE--NNCIGRIKIRS--NWNGYALIEDIAV-AKDYRKKGV 106 Query: 100 GKHMMKAVLHIAFEELKLHRVTLGVYDFNTSAISCYEKIGFVKEGL 145 G ++ + A +E + L D N SA Y K F+ + Sbjct: 107 GTALLHKAIEWA-KENHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 32.8 bits (75), Expect = 8e-04 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 11/155 (7%) Query: 39 ILIDAHSGEVV--YTKNEETPIQSATLSKLMTEYIALEQLNEGNIQLDEVVKISNEVFQA 96 I +D SG + + +E P+ S K++ L +++ G+ QL+ + + Sbjct: 43 IEMDLASGRTLTAWRADERFPMMST--FKVVLCGAVLARVDAGDEQLERKIHY-RQQDLV 99 Query: 97 ETSPIQVTSKDKT-TVRDLLHALLLTGNNRSALALAEHIAGNEDNFTQLMNE-KAKRLKL 154 + SP+ TV +L A + +N +A L + G T + + +L Sbjct: 100 DYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPA-GLTAFLRQIGDNVTRL 158 Query: 155 SQPSPFLNATGMNNDTNKLSTTTAIEVAKLATELV 189 + LN + D TTT +A +L+ Sbjct: 159 DRWETELN-EALPGDAR--DTTTPASMAATLRKLL 190
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.4 bits (232), Expect = 3e-24 Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 3/150 (2%) Query: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 IL+ DDD I +L L GY++ + + I+ + DL++ D++MP N ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 CQEVRE-NNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARV-KALLRRSSF 122 +++ +P+L++SA+ M I GA DY+ KPF+ EL+ + +AL Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 123 QNATSSKNEDGM-IRIRSAEIHKHNHTVKV 151 + ++DGM + RSA + + + Sbjct: 126 PSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.9 bits (98), Expect = 6e-07 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Query: 186 DMDYIEKTNHTFYGAYVDNDLKGSICI----NEQGKISFIFIDKEYRNRGIGSKLLQVAR 241 D+ Y+E+ + Y++N+ G I I N I I + K+YR +G+G+ LL A Sbjct: 56 DVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAI 115 Query: 242 D---ELNLESLLISFPNNSLLE-GFLKKTGF 268 + E + L++ + ++ F K F Sbjct: 116 EWAKENHFCGLMLETQDINISACHFYAKHHF 146 Score = 39.2 bits (91), Expect = 6e-06 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 47 NSLKHSFVALDGNKSVGVIL--GGIKDYENIKTMRCGTLAVHPNYRGIGVSQKLFELHKD 104 K +F+ N +G I Y I+ +AV +YR GV L + Sbjct: 62 EEGKAAFLYYLENNCIGRIKIRSNWNGYALIED-----IAVAKDYRKKGVGTALLHKAIE 116 Query: 105 EAIQNGCKQLFLEVIVGNDRAIRFYNKLGY 134 A +N L LE N A FY K + Sbjct: 117 WAKENHFCGLMLETQDINISACHFYAKHHF 146
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 314 bits (805), Expect = 4e-99 Identities = 189/591 (31%), Positives = 268/591 (45%), Gaps = 71/591 (12%) Query: 1 MKNKKEIAIVALTTGLALASVTPYGVGYAEETVQMQVDVQEDSFRTGELTQPSQKTPENV 60 M + + + L GL P+G +++ + SF +G L + + Sbjct: 1 MNKRAMLGAIGLAFGLM---AWPFGASAKGKSMVWNEQWKTPSFVSGSLLGR---CSQEL 54 Query: 61 VKDAL-KEKTEHALSPKQVSGDKGVDYKVLQKRSSYDGTTLLRMQQIYEGKEVYGHQLTA 119 V L +EK L G ++ + G T++R +Q G L A Sbjct: 55 VYRYLDQEKNTFQLG-----GQARERLSLIGNKLDELGHTVMRFEQAIAASLCMGAVLVA 109 Query: 120 HVDKKGVIKSVSGDSAQNLAKEDLKNPINLSKEEAKQYIYTKYGKDI---QFISEAEVKE 176 HV+ + S+SG NL K LK +S ++A+ + + +E Sbjct: 110 HVNDGE-LSSLSGTLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPT 168 Query: 177 VIFVDENRGQATNAYQVTFAAATPNYVSGTYLVDAHSGDMLK--NMVQESSLKVSEEHLE 234 + + + AY+V TP + Y++DA G +L N + E+ Sbjct: 169 RLVIYPDEETPRLAYEVNVRFLTPVPGNWIYMIDAADGKVLNKWNQMDEAKPG------- 221 Query: 235 SLKESKKSNSIALTGTGKDDLGITRSFGISEQSN-GKYVLADYTRGQGIETYDVNYRDIN 293 ++ + G G+ LG + + S G Y L D TRG GI TYD R Sbjct: 222 ---GAQPVAGTSTVGVGRGVLGDQKYINTTYSSYYGYYYLQDNTRGSGIFTYDGRNR--- 275 Query: 294 FEEKYYPGILATSTSTTF---NDPKAVSAHFLATKVYDFYKDKYKRNSFDNKGKKVVSVV 350 PG L F D AV AH+ A VYD+YK+ + R S+D + S V Sbjct: 276 ---TVLPGSLWADGDNQFFASYDAAAVDAHYYAGVVYDYYKNVHGRLSYDGSNAAIRSTV 332 Query: 351 HAWHSGETNDPKNWGNAFSANINNVSMLIYGD-------PMVRAFDIAGHEFTHAVTSSE 403 H + + NAF N S ++YGD P D+ GHE THAVT Sbjct: 333 HY--------GRGYNNAFW----NGSQMVYGDGDGQTFLPFSGGIDVVGHELTHAVTDYT 380 Query: 404 SNLEFFGESGAINEALSDIMGTAIEKYINNGEFNWTIGEQ------SGLVLRNMKNPSSV 457 + L + ESGAINEA+SDI GT +E Y N +W IGE +G LR+M +P+ Sbjct: 381 AGLVYQNESGAINEAMSDIFGTLVEFY-ANRNPDWEIGEDIYTPGVAGDALRSMSDPA-- 437 Query: 458 KFFDGVPYPDDYSKFSNLNGEDNEGVHFNSSIINKVAYLIAQGGTHNGVNVNGIGEDKMF 517 K+ D PD YSK +DN GVH NS IINK AYL++QGG H GV+V GIG DKM Sbjct: 438 KYGD----PDHYSKRYT-GTQDNGGVHTNSGIINKAAYLLSQGGVHYGVSVTGIGRDKMG 492 Query: 518 DIFYYANTDELNMTSNFSELRLACLKVATNKYGANSIEVETVQKAFDAAKI 568 IFY A L TSNFS+LR AC++ A + YG+ S EV +V++AF+A + Sbjct: 493 KIFYRALVYYLTPTSNFSQLRAACVQAAADLYGSTSQEVNSVKQAFNAVGV 543
>TOXICSSTOXIN#Staphylococcal toxic shock syndrome toxin signature. Length = 234 Score = 26.5 bits (58), Expect = 0.048 Identities = 10/20 (50%), Positives = 11/20 (55%) Query: 50 KTGGIIKFDMMDGSFINIDI 69 KTGG K M DGS D+ Sbjct: 189 KTGGYWKITMNDGSTYQSDL 208
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.4 bits (105), Expect = 5e-07 Identities = 69/379 (18%), Positives = 135/379 (35%), Gaps = 35/379 (9%) Query: 16 SKEYKIFIFGLLISRIGDSLYTFALPWIAYQLTGSAVIMSS---LFAINVLPIVLFGPLV 72 ++ + + + + +G L LP + L S + + L A+ L P++ Sbjct: 4 NRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 73 GVIIDRYDRKKLLLVADITNIILVSLVPILHSLHLLEIWHLYIITFMLAVMSMLFDVTTV 132 G + DR+ R+ +LLV+ + +++ L W LYI + + V Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL-----WVLYIGRIVAGITGATGAVAGA 118 Query: 133 TVIPQIAEASLTKANSFYQMVNQLASLFGPMIAGVFISFIGGFQLLWINVLSFIATLVAV 192 + + F + GP++ G+ F L+ + L Sbjct: 119 YIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGC 178 Query: 193 ILLPSMKTVNKKCEDKNTLQNILSDLVNGFKW---LKNDHLNLALSFQA-MIGNFGASAV 248 LLP + L+ + + F+W + +A+ F ++G A+ Sbjct: 179 FLLPESHKGE-----RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAA-- 231 Query: 249 LGIFMYYLLSTLQLTPEQSGVNYSLIGI-GGLLGSFIAVPLEKRLQRGILIPLLLFVGAI 307 +++ + G++ + GI L + I P+ RL + L + Sbjct: 232 --LWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 308 GLTFALWST-YWLA-PGI----AFGIAMTCNIAWNTIVATVRQETVPSNMQGRVLGFSRV 361 G ++T W+A P + + GI M A +++ V QG++ G Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGIGMP---ALQAMLSR----QVDEERQGQLQGSLAA 342 Query: 362 LTRLAMPLGALVGGIISAY 380 LT L +G L+ I A Sbjct: 343 LTSLTSIVGPLLFTAIYAA 361
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 6e-15 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 3 KIMIVEDDMKIAELLSTYVAKYGYEGIIVSDFHNVLNIFLEEQPELVLLDINLPSFDGYY 62 I++ +DD I +L+ +++ GY+ I S+ + +LV+ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 WCRQIRGV-STCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRR 118 +I+ P+L +SA+ M + A E G D++ KPF ++ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 3e-05 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 9/130 (6%) Query: 1 MIREAEPKDSNVIENLYKKLAPHSKNIKVLPERIEQIRDDSNNFLFVYEESGNVKGSIFM 60 MI E E + K P+ K + + + ++ F+Y N G I + Sbjct: 26 MIPAFENGVWTYTEERFSK--PYFKQYEDDDMDVSYV-EEEGKAAFLYYLENNCIGRIKI 82 Query: 61 TFCLDPGYQFRPYTVLEYVIVNEDFRGNGIGEKLLKHVEEISITRGSTRIILLSSATRIK 120 + Y ++E + V +D+R G+G LL E + ++L + I Sbjct: 83 R------SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINIS 136 Query: 121 AHKFFTKNGY 130 A F+ K+ + Sbjct: 137 ACHFYAKHHF 146
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 27.3 bits (60), Expect = 0.019 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 5/55 (9%) Query: 19 NYGYEPTNEVRD-----IEQEDYRPDDAEDAPTSPPPSQAPSLPSTFASPAQPGN 68 N VR+ IE + DD + P +P P P+ P P N Sbjct: 261 NGAVFINENVRNFLKQNIEDIHFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDN 315
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.011 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 6/182 (3%) Query: 224 VKKKKALTLLGLCFMAAGLGIGLIQPLGIFIVTDQL--GLSKESLQWLLTVNGAGMIVGG 281 +K + L ++ +GIGLI P+ ++ D + LL + Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 282 ALAMVFAKNVAPQKMLIIGMLGQAIGIGIIGYSTNLWVTLTAQLFSGLALPCIQIGINTL 341 + + + +L++ + G A+ I+ + LWV ++ +G+ Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAY 119 Query: 342 IIQNSDTDFIGRVNGILSPLFTGSMVVTMSIAGSLKEMFSLSTMYEGTAL---LFIIGLL 398 I +D D R G +S F MV + G + + + AL F+ G Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 399 FI 400 + Sbjct: 180 LL 181 Score = 29.4 bits (66), Expect = 0.028 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 60 MISVAEFAPIFIFSFIGGTFADRWKPKRTMIWCETLSSLSVFAVLITLMFGTWKIVFFVT 119 ++ + I G A R +R ++ I L F T + F Sbjct: 251 SLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG----YILLAFATRGWMAFPI 306 Query: 120 LISAILSQFSQPSGMKLFKQHLSAEQIQLAMSIYQTIFAIFMVLGPILGTFIF 172 ++ P+ + + + E+ + ++ ++GP+L T I+ Sbjct: 307 MVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 1e-04 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 18/102 (17%) Query: 416 QVFI-NILQNSIEAMPDGGRISIHIKEIGKDGIIINVIDKGIGIPEERIKRLGEPFYSTK 474 Q + N +++ I +P GG+I + + + + V + G + Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLKGTKDNGT-VTLEVENTGSLALKN------------T 307 Query: 475 EKGTGIGLMLSYKIIESHQGN---ISIMSEVGVGTTVTIYLP 513 ++ TG GL + ++ G I + + G + +P Sbjct: 308 KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 1e-04 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 262 NLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGMSQEQINRFGEPYFSTKTKGTGL 321 N IK+GI +P GG + + + N V + +E++G + + TG Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------------ESTGT 313 Query: 322 GTMVAVKIIETMQGN---LKIRSVMNKGTTLTITFP 354 G + ++ + G +K+ K + P Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVNA-MVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 3e-22 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 2/135 (1%) Query: 3 HILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLMLPGLNGIE 62 IL+ +D+ + L L GY V I + + DL++ D+++P N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VCRRLRAT-KNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARM-RVIFRREE 120 + R++ + P+++++A+++ M + + GA DYLPKPF + EL+ + R + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 QIENKHVSSLTFKDL 135 + S L Sbjct: 125 RPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 43.3 bits (102), Expect = 1e-06 Identities = 30/188 (15%), Positives = 70/188 (37%), Gaps = 36/188 (19%) Query: 290 LKEVDRLNKLVLELLELSRAESEQMHPIAADPVHVNSILKQVTQNFAVLQTEF----QFD 345 L++ + +++ L EL R + A V + L V + +F QF+ Sbjct: 187 LEDPTKAREMLTSLSELMRY---SLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFE 243 Query: 346 MKLGEDSAYVSIPSSYLEQIIIIVLDNAVKY---TKEVNKYICIESSVQSGKVKIRIIDR 402 ++ V +P ++ ++ +N +K+ I ++ + +G V + + + Sbjct: 244 NQINPAIMDVQVPPMLVQTLV----ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299 Query: 403 GAGIPEADLPFVLNRFYRVDKARSRKQGGNGLGLS-IAKRLVEKY--NGTIRIESKEGEG 459 G+ + + G GL + +RL Y I++ K+G+ Sbjct: 300 GSLALK------------------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 460 TIVTIILP 467 +++P Sbjct: 342 N-AMVLIP 348
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 2e-16 Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 17/178 (9%) Query: 1 MNKRRYDSDLAKEIIAEKATELFSLKGYTRTSIDNIAKASGYSKGHIYYHYKNKEELFVY 60 K + ++ ++ I + A LFS +G + TS+ IAKA+G ++G IY+H+K+K +LF Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 LAKDSMRNWHDKWEIAEKQYTNATGKLYGIAKFVLYNY--------KTPLLRAGQELASD 112 + + S N E+ + G + + +L + + LL + Sbjct: 62 IWELSESNIG---ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCE 118 Query: 113 PSANPSTIQQLYGLAVIPLKTYQKI---LDEGIQSGEFY-IENVEDSSLLLGSWLGGL 166 + +QQ + L++Y +I L I++ +++++ ++ GL Sbjct: 119 FVGEMAVVQQAQ--RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.0 bits (228), Expect = 3e-24 Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 6/223 (2%) Query: 3 EQRVAIVTGGASGIGKALAIQLANKDIFVIIADINETSGQELVNNIKNNNQLARFEYLDV 62 E ++A +TG A GIG+A+A LA++ + D N +++V+++K + A DV Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 63 TNAGSVEELIIKIVNEFGRIDYMFNNAGIAMYGEVFDMSLDNWKHIIEINLLGVIYGTQL 122 ++ +++E+ +I E G ID + N AG+ G + +S + W+ +N GV ++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 123 AYQFMKKQGFGHIINTASATGLGPAPLCTAYATTKHAIVGLTTSLHYEAEEYGVNVSVLC 182 ++M + G I+ S P AYA++K A V T L E EY + +++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 183 PTFVDTPIFEKSIAINMNKSQIIK----QLKTNKPISADKFAE 221 P +T + A Q+IK KT P+ K A+ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLK--KLAK 227
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 7e-07 Identities = 59/315 (18%), Positives = 118/315 (37%), Gaps = 18/315 (5%) Query: 41 LLLSGVGIANLGAWIYLIALNVLVYNMGGSALAVATLYVIKPLAAL---LTNAWSGSMID 97 ++LS V + +G + + L L+ ++ S A ++ L AL G++ D Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 98 RLNKRKLMFHLDIYRAVFIAILPLLPSLWMVYVFVFFISMANAIYEPTAMTYMTKLIPVE 157 R +R ++ AV AI+ P LW++Y+ + A A Y+ + + Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGD 127 Query: 158 KRQRFNSLRSLIGSGAFLIGPAIAGVLLIASTPE---FAIYINAIAFLLSGVITLLLPNL 214 +R R S + GP + G++ S A +N + FL LLP Sbjct: 128 ERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTG---CFLLPES 184 Query: 215 DKKSDMHTSNDKLSLAVLKKDWNIVLNFSKKSLYIVFVYFLFQGMMVLATANDSLELSFA 274 K L L + + + +F M ++ +L + F Sbjct: 185 HK-----GERRPLRREALNPLASFRWARGMTVVA--ALMAVFFIMQLVGQVPAALWVIFG 237 Query: 275 KEVLLLTDSEYGFLVSAGGA-GIILGAITNTMLSKKLAPSFLIGIGSLFIAIGYLIYAFS 333 ++ + G ++A G + A+ ++ +L + +G + GY++ AF+ Sbjct: 238 EDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFA 297 Query: 334 NGFVIAAIGFLILSF 348 +A ++L+ Sbjct: 298 TRGWMAFPIMVLLAS 312
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 28.2 bits (62), Expect = 0.036 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 163 SYASGMMNSREGVEKFLDWI----FNKRYTIHPFIQEQLIAGMMRN 204 SY + + VE + DWI + +R + FI+ L+ + N Sbjct: 189 SYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDFIEGSLLTDIDAN 234
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 29.3 bits (65), Expect = 0.031 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 211 NEKHLNPSDDLISALVQAKEQEDKLSKNELLSTIWLLIIAGHETTVN-----LISNGVLA 265 +K + +D++ +AL Q + + D K+ LS + ++ LIS A Sbjct: 48 VQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVHGGA 107 Query: 266 LLQHPEQMNLLRQDPSLLASAVDELLR 292 L Q L DPS L + ELLR Sbjct: 108 LEDFLRQARSLFPDPSDLVLVLRELLR 134
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.031 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 199 IYDIATKEEMRGKGFGSTMFHYLLQEAKALNVAQCVLQASPD---GINIYKKAGF 250 I DIA ++ R KG G+ + H ++ AK + +L+ + Y K F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 3e-04 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 13/110 (11%) Query: 44 DGDNVEYMP------FVIYDGDHMVGFIMHAVVRETTDMYWINGFIIDQMQQGKGYGKAA 97 D +V Y+ F+ Y ++ +G I + I + + + KG G A Sbjct: 53 DDMDVSYVEEEGKAAFLYYLENNCIGRI--KIRSNWNGYALIEDIAVAKDYRKKGVGTAL 110 Query: 98 LQESIYLIKNTFKVCKEVRLTVHKDNISAKKLYERYGFQSLGHD---YDG 144 L ++I K + L NISA Y ++ F D Y Sbjct: 111 LHKAIEWAKE--NHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSN 158
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.7 bits (116), Expect = 2e-08 Identities = 39/198 (19%), Positives = 85/198 (42%), Gaps = 9/198 (4%) Query: 206 MMRTKQVYLLFFMLFTSCMGGLYLISMVKDIGVQLVGLSAATAANAVAMIAIFNTVGRI- 264 M + + ++ + +G + LI V ++ + S A+ ++A++ + Sbjct: 1 MKPNRPLIVILSTVALDAVG-IGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFAC 59 Query: 265 --ILGTLSDKIGRMKIVSATFIIIGLSVFTLSFIPLNYGIYFACVASVAFCFGGNITIFP 322 +LG LSD+ GR ++ + + ++ P + +Y + VA G + Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRI--VAGITGATGAVAG 117 Query: 323 AIVGDYFGLKNHSTNYGIVYQGFGFGALAGSFIGALFGGFQP--TFIIIGILSVISFVIS 380 A + D + ++G + FGFG +AG +G L GGF P F L+ ++F+ Sbjct: 118 AYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTG 177 Query: 381 I-LIRPPKAEKKKEIKQL 397 L+ +++ +++ Sbjct: 178 CFLLPESHKGERRPLRRE 195 Score = 38.3 bits (89), Expect = 4e-05 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 17/152 (11%) Query: 4 ISINPLLIVLGTIIVQIGLGTIYTWSLFNQPLVSKFGWNLNAVAITFSITSFSLS---FS 60 +++ L+ + I+ +G W +F + +F W+ A I S+ +F + Sbjct: 209 MTVVAALMAVFFIMQLVGQVPAALWVIFGE---DRFHWD--ATTIGISLAAFGILHSLAQ 263 Query: 61 TLFAGKLQQKLGLRKLIATAGIVLGLGLILSSQVSS----LPLLYLLAGVVVGYADGTAY 116 + G + +LG R+ + I G G IL + + P++ LLA +G A Sbjct: 264 AMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323 Query: 117 ITSLSNLIKWFPNRKGLISGISVSAYGMGSLI 148 ++ + R+G + G + + S++ Sbjct: 324 LSRQVD-----EERQGQLQGSLAALTSLTSIV 350 Score = 33.6 bits (77), Expect = 0.001 Identities = 53/316 (16%), Positives = 95/316 (30%), Gaps = 36/316 (11%) Query: 63 FAGKLQQKLGLRKLIATAGIVLGLGLILSSQVSSLPLLYL---LAGVV----VGYADGTA 115 G L + G R ++ + + + + L +LY+ +AG+ A Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 116 YITSLSNLIKWFPNRKGLISGISVSAYGMGSLIFRYINGSLIDSLGVSQAFLYWGIIVLL 175 IT + F G +S G ++ G L+ F + L Sbjct: 122 DITDGDERARHF----GFMSACFGFGMVAGPVL-----GGLMGGFSPHAPFFAAAALNGL 172 Query: 176 LVLIGSFFLREAIVSNTVTETLH--NDYTPREMMRTKQ-VYLLFFMLFTSCMGGLYLISM 232 L G F L E+ N R V L + F + G ++ Sbjct: 173 NFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 233 VKDIGVQLVGLSAATAANAVAMIAIFNTVGRIIL-GTLSDKIGRMKIVSATFIIIGLSVF 291 G A T ++A I +++ + ++ G ++ ++G + + I G Sbjct: 233 WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI 292 Query: 292 TLSFIPLNYGIYFACVASVAFCFGGNITIFPAIVGDYFGLKNHSTNYGIVYQGFGFGALA 351 L+F + + PA+ S QG G+LA Sbjct: 293 LLAFATRGW-----MAFPIMVLLASGGIGMPALQAML------SRQVDEERQGQLQGSLA 341 Query: 352 -----GSFIGALFGGF 362 S +G L Sbjct: 342 ALTSLTSIVGPLLFTA 357
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 31.3 bits (71), Expect = 0.002 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Query: 64 LIRNEESEIVGRINLVDIDSETRISSLGYRVGEKF----TKKGVATAAV 108 I+ ES++ GR+ ++++D + + +R E+F T K V AV Sbjct: 28 QIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAV 76
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 3e-21 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNL 60 M ILV +DD I+ ++ Q L Y V + S+ DLV+ DV+MP+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 NGFEVAKMIRS-QSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLR 119 N F++ I+ + ++P+++++A +K + G DY+ KPF LI + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 R 120 Sbjct: 121 E 121
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 93.2 bits (231), Expect = 1e-24 Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 8/235 (3%) Query: 14 KIAVITGASSGFGLLTTLELTKKDYLVIATMRNLEKQGNLLSQATQLNLLQNIKIQQLDV 73 KIA ITGA+ G G L + + A N EK ++S + DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA--EAFPADV 66 Query: 74 TDQNSLHNF-QLFLKEINKVDLLINNAGYANGGFVEETPVEEYRKQFETNLFGAISITQL 132 D ++ +E+ +D+L+N AG G + EE+ F N G + ++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 133 VLPYMREQQSGKIINISSISGQVAFPGLSPYVSSKYALEGWSESLRLEVKPFGIDVALIE 192 V YM +++SG I+ + S V ++ Y SSK A +++ L LE+ + I ++ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 193 PGSYNTNIWEVGKQLATNQSDTSSPYKEYMDKIQKHINSGSDTFGNPIDVANKIV 247 PGS T++ L +++ K ++ + I P D+A+ ++ Sbjct: 187 PGSTETDM---QWSLWADENGAEQVIKGSLETFKTGIPLKK--LAKPSDIADAVL 236
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 29.6 bits (66), Expect = 0.008 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 41 MIPKRLEGKSVLDAGCAAGWYTS---QFVESGANVTAIDVSSEMVKAAKESMGDKA 93 M K +EGK G A G + GA++ A+D + E ++ S+ +A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEA 56
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.1 bits (70), Expect = 8e-04 Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 43 IAIGVWKENELIGFARVVSDGVFRAYLEDVVVHESVRNKGIGEKMLTMLLE 93 A + EN IG ++ S+ A +ED+ V + R KG+G +L +E Sbjct: 66 AAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIE 116
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 29.2 bits (65), Expect = 0.013 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%) Query: 46 VGSGR-----VIIPLLEAGFKVDGIDYSPEMLESCRVRCKERNLHPNLY 89 G+ + V L G + +DY+PE LE K H + Sbjct: 14 TGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 2e-04 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 38/182 (20%) Query: 282 IIKQTDQISNLIEEL---LRFS---KLERDVLQKEEFSIKSLLQSIIDKHKIELDSKEID 335 I++ + ++ L +R+S R V +E + ++ S + I+ + + Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELT---VVDSYLQLASIQFEDR--- 239 Query: 336 LHVNYNVGDAIIYADVNKMSMVLQNLISNAIKYTTNQ-----NIKITLEDRNESVYFQIQ 390 L + AI+ V M ++Q L+ N IK+ Q I + N +V +++ Sbjct: 240 LQFENQINPAIMDVQVPPM--LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297 Query: 391 NGMNAEQMKDIDKIWEPFYVLESSRSKDHSGTGLGLAIVKSILE-RHGFDYGVSTIEGEI 449 N TG GL V+ L+ +G + + E + Sbjct: 298 N--TGSLALK----------------NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQG 339 Query: 450 RF 451 + Sbjct: 340 KV 341
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 3e-23 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 2 KVLIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKHSGIT 61 +L+ADD+ + +L + G++V + + + DL + D +MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VCQEIKK-NSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLIQH 117 + IKK + VL+++A++ + A + GA +Y+ KPF LI + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 27.6 bits (61), Expect = 0.032 Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 8 VVVMLTIFLCITACSRGERIKEISDVEPGDFNKYAG 43 V L A + RIK+I+ ++ G N+ G Sbjct: 12 VFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIG 47
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 31.3 bits (71), Expect = 0.005 Identities = 14/55 (25%), Positives = 21/55 (38%) Query: 74 GKINSYTAGVADLSTKKPVKSDYRFRIGSVTKTFTATTVLQLVGENRVQLDDPIE 128 G++ +A T ++D RF + S K VL V QL+ I Sbjct: 38 GRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIH 92
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.7 bits (66), Expect = 0.021 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Query: 310 KHLQNVLKVLASISDQDTPVSSSYFYTAGFRRKELDA 346 KHL+ +L+VL ++S Q PVSS T GF + +A Sbjct: 567 KHLETLLEVLVTLSQQGQPVSSE---TYGFLNRLTEA 600
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 1e-06 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 20/156 (12%) Query: 15 IIGKDESI----ELAAIALIAKGHILLEDVPGTGKTTLAKSL---AKSVDAKFQRIQFTA 67 ++G+ ++ + A + +++ GTGK +A++L K + F I A Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA 198 Query: 68 DTLPGDVIGLEYFNVKESDF----KTRLGPI-FAN--IVLVDEINRAVPRTQSSLLEVME 120 +P D+I E F ++ F G A + +DEI Q+ LL V++ Sbjct: 199 --IPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQ 256 Query: 121 ERTVTIAKQTHSLPEPFLVIATQN-PLESA---GTF 152 + T + ++A N L+ + G F Sbjct: 257 QGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLF 292
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 629 bits (1625), Expect = 0.0 Identities = 225/649 (34%), Positives = 349/649 (53%), Gaps = 17/649 (2%) Query: 1 MTTINIGIVAHVDAGKTSLTERILYETNVIKEIGRVDGGSTQTDSMELERQRGITIKASV 60 M INIG++AHVDAGKT+LTE +LY + I E+G VD G+T+TD+ LERQRGITI+ + Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 61 VSFFIDDLKVNVIDTPGHADFIAEVERSFRVLDSAILVISAVEGVQAQTKILMRTLQKLN 120 SF ++ KVN+IDTPGH DF+AEV RS VLD AIL+ISA +GVQAQT+IL L+K+ Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 121 IPTILFVNKIDRRGANSKKVVKQIKTILSNEAFPFYSVLNEGTKEARIIEYKSYDDCIER 180 IPTI F+NKID+ G + V + IK LS E V E + + + + + Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV--ELYPNMCVTNF-TESEQWDT 177 Query: 181 LAPYNESLLESYVNNEIVTDTMLREELIKQIAQANVYPIFFGSAMTGIGVSELLENISAL 240 + N+ LLE Y++ + + L +E + +++P++ GSA IG+ L+E I+ Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 241 LPANNLSQDEELSGIVFKIEREPSGEKIAYVRVFSGNLHVRKHVDIQRDQSLPHKEKIKK 300 ++ EL G VFKIE +++AY+R++SG LH+R V I + K KI + Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKE----KIKITE 293 Query: 301 MCMFHNGDAVQTSTVPSGEFCKVWGLSDIKIGDIIGART--DYIKDIHFAEPQMEAAIDA 358 M NG+ + SGE + +K+ ++G + I P ++ ++ Sbjct: 294 MYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEP 352 Query: 359 VPKERIHDLYAALIELCEEDPLIKVWKDDVHNELYIRLFGQVQKEVIETTLFEKYNLQVT 418 ++ L AL+E+ + DPL++ + D +E+ + G+VQ EV L EKY++++ Sbjct: 353 SKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIE 412 Query: 419 FSNTRVVCIEKPIGIGISVEIIGEKTNPFYATVGFKVERGELNSGITYKLGVELGSLPLA 478 V+ +E+P+ I NPF+A++G V L SG+ Y+ V LG L + Sbjct: 413 IKEPTVIYMERPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQS 472 Query: 479 FHKAIEDTVFQTLKQGLYGWEVTDIIVTLTHTGYASPVTTASDFRNLTPLVLMDALKKAE 538 F A+ + + +QGLYGW VTD + + Y SPV+T +DFR L P+VL LKKA Sbjct: 473 FQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAG 532 Query: 539 TYVYEPVNAFELTVPEQAISTAMYKLASISATFAEPIFNNDSYQLTGSLPVAKTENFKRM 598 T + EP +F++ P++ +S A A + N+ L+G +P + ++ Sbjct: 533 TELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSD 592 Query: 599 LHSFTEGEGIFTTKPAGF--TKLRPPFPTRKRVDYNPLNRKDYLLHVLR 645 L FT G + T+ G+ T P R P +R D + ++ Sbjct: 593 LTFFTNGRSVCLTELKGYHVTTGEPVCQPR-----RPNSRIDKVRYMFN 636
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.8 bits (64), Expect = 0.025 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%) Query: 165 PPQNIWETSKKHLNNIT-TITSSYNYGTDSEL--QMFLYTKTKTYKMFIPKGHCQSLTIS 221 P + W T+K NN+T + +Y S L Q T + G +L + Sbjct: 634 PQGSPWGTAKLMFNNLTLGQNAVMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVG 693 Query: 222 D 222 + Sbjct: 694 N 694
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 29.6 bits (66), Expect = 0.036 Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 3/100 (3%) Query: 295 KIDRKTQDIVEKKAEIVTTYHEGIEPDKKIKKKMEKYQAKIAPL--VNEVVGKSIAPLDR 352 ++ + ++ + + K ++ + +A+ A L ++V+ + L R Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316 Query: 353 KLNTAGESTLGNLVADAQRATMQSQIALMNPGGIRNDLDA 392 L+ + E+ L A+ Q+ Q++I+ + +R DLDA Sbjct: 317 DLDASREA-KKQLEAEHQKLEEQNKISEASRQSLRRDLDA 355
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 33.5 bits (76), Expect = 5e-04 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 29/165 (17%) Query: 7 RINKDDAIVLLVDHQTGLMSGLVRDY-GVDEFKNNVLALAHTAKFFDLPVILTTSFEN-- 63 + + A++L+ D Q + V E N+ L + +PV+ T + Sbjct: 25 VPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQN 84 Query: 64 -----------GPN---GPLMQELVDLFPHAPKIARPGQI-------NAWDNDDFVKAIE 102 GP GP ++++ AP+ + +A+ + ++ + Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKIIT--ELAPE---DDDLVLTKWRYSAFKRTNLLEMMR 139 Query: 103 ETEKKQLIIAGVVTDVCVAFPALSAIKAGYEVFAVTDASGTFSKQ 147 + + QLII G+ + A A + F V DA FS + Sbjct: 140 KEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLE 184
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 36.9 bits (85), Expect = 3e-05 Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 21/186 (11%) Query: 7 LNPENSALILIDFQPQMT--FGVASIDRQTLINNVMLLAKSAKTFNVPTILT------TV 58 +P + L++ D Q F + L N+ L +P + T Sbjct: 26 PDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNP 85 Query: 59 ETRSFSGYFWPQILDIFPNH-EIIERSS-------MNSWEDPKF-----VEAVKATGRKK 105 + R+ FW L+ P +II + + W F +E ++ GR + Sbjct: 86 DDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQ 145 Query: 106 LIFAALWTEVCLAFPVLEAIKAGYEVYAVDDASGGTSLTAHNAAMRRVEQAGAIPVTAIQ 165 LI ++ + EA + + V DA SL H A+ A V Sbjct: 146 LIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCAFTVMTDS 205 Query: 166 VLLEYQ 171 +L + Q Sbjct: 206 LLDQLQ 211
>cloacin#Cloacin signature. Length = 551 Score = 38.5 bits (89), Expect = 1e-06 Identities = 27/75 (36%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 21 GGHGGWPGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHG---GWQGGHGGWQG 77 G + G G GG G G G G GW + W GG G W GG G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 78 GHGGWPGGHSGWQGG 92 G G GG SG G Sbjct: 66 GGNGNSGGGSGTGGN 80 Score = 37.8 bits (87), Expect = 3e-06 Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 13 QGGHGGWPGGHGGWPGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHG---GWQGGHGGWQ 69 +G + G G GG G G G G GW + W GG G W GG G Sbjct: 7 RGHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 70 GGHGGWQGGHGGWPGGHS 87 GG G GG G G S Sbjct: 65 GGGNGNSGGGSGTGGNLS 82 Score = 37.0 bits (85), Expect = 5e-06 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 28 GGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHG---GWQGGHGGWPG 84 G + G G GG G G G G GW + W GG G W GG G G Sbjct: 8 GHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 85 GHSGWQGGHGG 95 G +G GG G Sbjct: 66 GGNGNSGGGSG 76 Score = 32.0 bits (72), Expect = 2e-04 Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 5/73 (6%) Query: 31 GGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHG---GWPGGHS 87 G +G + G G GG G G G G GW + W GG G W GG Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGGSG 61 Query: 88 GWQGGHGGWQSGH 100 GG G G Sbjct: 62 HGNGGGNGNSGGG 74 Score = 30.8 bits (69), Expect = 7e-04 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%) Query: 12 WQGGHGGWPGGHG---GWPGGHGGWQGGHGGWQGGHGGWQGG 50 W + W GG G W GG G GG G GG G G Sbjct: 39 WSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 28.5 bits (63), Expect = 0.004 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 38 GGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWQGGHGGWPGGHS---GWQGGHG 94 G +G + G G GG G G G G GW + W GG W GG G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGS--GWSSENNPWGGGSGSGIHWGGGSG 61 Query: 95 GWQSGHG 101 G Sbjct: 62 HGNGGGN 68 Score = 27.4 bits (60), Expect = 0.012 Identities = 12/30 (40%), Positives = 12/30 (40%) Query: 7 GYAGWWQGGHGGWPGGHGGWPGGHGGWQGG 36 G W GG G GG G GG G G Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.6 bits (204), Expect = 2e-20 Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 3/115 (2%) Query: 3 KVLIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVMDG 62 +L+ +D+ IR + S GYDV + AA + L++ D+++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDENA 62 Query: 63 WSICRRIRK-SSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKR 116 + + RI+K ++P+++++A++ + E GA DY+ KPF L+ R Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 31.3 bits (71), Expect = 0.015 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 56/208 (26%) Query: 286 KSVGMKTKYIIQYFLLEAL-----------WLAILGTVGGIVLGLLASV-----WLTSYL 329 + G + +Y L+E L GT+ ++L + L Sbjct: 98 RCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLL 157 Query: 330 ADVLSLPLHWGISWSVIFTTIIVGLIVTFLASWIPVKSGMCVSPLQMLRDTENTSVNYAL 389 D L+LPL WG GL+ L ++ + + + Sbjct: 158 PDQLTLPLLWG------------GLLFNLLGGFVSLGDAVIGAMAG-------------- 191 Query: 390 PFKKKFQLFIFTCGILSIYVYNIAFTTNTNGNAVFKWFLAL--LLTTAVLLFIFTFVRFI 447 ++ + + + G FK AL L L + + Sbjct: 192 --------YLVLW--SLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLV 241 Query: 448 GFIYSLLFRLIG--AMKSIMPQSLFLAL 473 G + L+ +P +LA+ Sbjct: 242 GAFMGIGLILLRNHHQSKPIPFGPYLAI 269
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.4 bits (177), Expect = 5e-18 Identities = 28/190 (14%), Positives = 69/190 (36%), Gaps = 7/190 (3%) Query: 8 NQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEVLLEGVVDYWIEMYQ 67 ++ +++VA LF ++G + TS+ E+ + + V++ +Y+HF +K L + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 68 SAIDDVISQNQFLVEDRI-QLFLKQLAQGVQSREYKGSCPFITLYIQSPTQATQIKEKIG 126 + ++ + ++ + L V + I + + +++ Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 127 LFFTGLQEKVSLLLKQGIENGEFRNTIHIDEVASLF---ITNLEGALFISETLKDATVIT 183 +++ LK IE + A + I+ L + D Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL---K 188 Query: 184 KTADHFFKLL 193 K A + +L Sbjct: 189 KEARDYVAIL 198
>adhesinb#Adhesin B signature. Length = 310 Score = 30.2 bits (68), Expect = 0.003 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 1 MKRLKHVILLLLCFLCLSGCNQENGAEIQEYIKKKHGIDVVVTHWSPIN---ENNGGDTY 57 MK+ + ++LLLL F+ L+ C+ + + K VV S I +N GD Sbjct: 1 MKKCRFLVLLLLAFVGLAACSSQKSSTETGSSKLN-----VVATNSIIADITKNIAGDKI 55 Query: 58 H 58 + Sbjct: 56 N 56
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 35.6 bits (82), Expect = 3e-04 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%) Query: 262 IITFLIAGHETTSGLLSFAIYFLLKNPDKLKKAYEEVDRVLTDPTPTYQQVMKLKYIRMI 321 + FLI ++FAI+ +K +KL + EE P PT ++V+ L IR + Sbjct: 82 VFDFLI---------VAFAIFMAIKLINKLNRKKEEPA---AAPAPTKEEVL-LTEIRDL 128 Query: 322 LNES 325 L E Sbjct: 129 LKEQ 132
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 126 bits (319), Expect = 5e-34 Identities = 100/439 (22%), Positives = 200/439 (45%), Gaps = 21/439 (4%) Query: 14 MLVILFIGAFVSFLNNSLLNVALPSIMKDLDIKDYSTIQWLSTGYMLVSGILIPASAFLI 73 +L+ L I +F S LN +LNV+LP I D + ST W++T +ML I L Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPAST-NWVNTAFMLTFSIGTAVYGKLS 73 Query: 74 TRFSNRSLFITSMLIFIFGTALAAVAPN-FGLLLTGRMVQAAGSSVMGPLLMNIMLVSFP 132 + + L + ++I FG+ + V + F LL+ R +Q AG++ L+M ++ P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 133 REKRGTAMGIFGLVMITAPAIGPTLSGYIVEYYDWRLLFEMILPLAIISLLLGIWKSENV 192 +E RG A G+ G ++ +GP + G I Y W L L + ++ + + Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL-----LIPMITIITVPFLMKL 188 Query: 193 MRQNKNAK--LDYLSLLLSSVGFGGLLYGFSSASSNGWTNKVVLTTLIVGAIALIAFIIR 250 +++ K D ++L SVG + +S S ++ LIV ++ + F+ Sbjct: 189 LKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYS---------ISFLIVSVLSFLIFVKH 239 Query: 251 QLKMNEPLLDLRVYKYPMFALASVIAIVNAVAMFSGMILTPAYVQNVRGISPLSSG-LMM 309 K+ +P +D + K F + + + + + + P +++V +S G +++ Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 310 LPGAVIMGVMSPITGKLFDKYGPRILGIVGLSITAVSTYMLANLQIDSSHTHIILIYTLR 369 PG + + + I G L D+ GP + +G++ +VS + L ++++ + +I Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFV 358 Query: 370 MFGMAMVMMPLMTNGLNQLPTRLNPHGTAVNNTAQQVSGSIGTAILVTIMNSVTKTKAES 429 + G++ + T + L + G ++ N +S G AI+ ++ S+ Sbjct: 359 LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL-SIPLLDQRL 417 Query: 430 LMSELDPTTFTEATKVMLM 448 L E+D +T+ + ++L Sbjct: 418 LPMEVDQSTYLYSNLLLLF 436
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 53.5 bits (128), Expect = 1e-10 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 3/147 (2%) Query: 20 ACKSNEEKLKGAPDEQKVDEDKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKRKQEE 79 + SN E+ DE V E + + +E K ++ +Q A E + E Sbjct: 1009 SVPSNNEE-IARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 80 QQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEKKAQQQQS 139 A+E K + + E + E + + + K+ EE+ + + EK + + Sbjct: 1068 V--AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 140 TQQERTQKQEKPTQATGGKPTRSQISV 166 T Q ++++ T +P R Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPT 1152 Score = 52.4 bits (125), Expect = 4e-10 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 32 PDEQKVDEDKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQE 91 P E + +E K ++ +Q A E + E A+E K + + E + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREV--AKEAKSNVKANTQTNEVAQSGS 1090 Query: 92 EQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEKKAQQQQSTQQERTQKQEKP 151 E + + + K+ +EEK K E ++ E K + Q+Q T Q + + + Sbjct: 1091 ETKETQTTETKETATV-EKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 152 TQATGGKPTRSQ 163 K +SQ Sbjct: 1150 DPTVNIKEPQSQ 1161 Score = 49.7 bits (118), Expect = 3e-09 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 7/141 (4%) Query: 22 KSNEEKLKGAPDEQKVDEDKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKRKQEE-- 79 ++ E + + E K E + E Q + E + + Q E + E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 80 -QQRAEEEKRKQEEQQRAEEEKRK-QEEQQRAEEEKRKQ---EEQQRAEEEKRKQEEKKA 134 Q +E E++++A+ E K QE + + KQ E Q E R+ + Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 135 QQQQSTQQERTQKQEKPTQAT 155 ++ +Q T E+P + T Sbjct: 1155 IKEPQSQTNTTADTEQPAKET 1175 Score = 48.1 bits (114), Expect = 1e-08 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 1/120 (0%) Query: 32 PDEQKVDEDKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQE 91 ++V ++ K + + E ++ E ++ + + E ++EE+ + E EK QE Sbjct: 1063 AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK-TQE 1121 Query: 92 EQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEKKAQQQQSTQQERTQKQEKP 151 + + KQE+ + + + E K Q + + T + Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Score = 47.4 bits (112), Expect = 2e-08 Identities = 21/127 (16%), Positives = 46/127 (36%) Query: 25 EEKLKGAPDEQKVDEDKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAE 84 EK + E + E + + Q E + E ++ E ++ ++ E Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 85 EEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEKKAQQQQSTQQER 144 + K + E+ Q + + +Q E + Q E R + +E ++Q + E+ Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 145 TQKQEKP 151 K+ Sbjct: 1171 PAKETSS 1177 Score = 44.7 bits (105), Expect = 1e-07 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 2/150 (1%) Query: 16 IALSACKSNEEKLKGAPDEQKVDEDKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKR 75 +A S ++ E + + V++++K E + QE + + KQE+ + + + Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 76 KQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEKKAQ 135 E K Q + + ++ +E E+ E E + Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ--PVTESTTVNTGNSVVENPENT 1202 Query: 136 QQQSTQQERTQKQEKPTQATGGKPTRSQIS 165 +TQ + + + RS Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Score = 41.6 bits (97), Expect = 1e-06 Identities = 15/111 (13%), Positives = 41/111 (36%) Query: 40 DKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEE 99 + + ++ A ++ A + + + +++E + E+ ++ E Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 100 KRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEKKAQQQQSTQQERTQKQEK 150 Q + E + + Q E + E K+ Q ++ + +K+EK Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Score = 36.2 bits (83), Expect = 9e-05 Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 11/131 (8%) Query: 36 KVDEDKKVVEEEKGKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQRAEEEKRKQEEQQR 95 +V++ + V+ +A+ ++ A ++ A + + Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET---TETV 1040 Query: 96 AEEEKRKQEEQQRAEEEKRKQEEQQR--AEEEKR------KQEEKKAQQQQSTQQERTQK 147 AE K++ + ++ E++ + Q R A+E K + E ++ + + T+ Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET 1100 Query: 148 QEKPTQATGGK 158 +E T K Sbjct: 1101 KETATVEKEEK 1111
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 33.2 bits (76), Expect = 7e-04 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Query: 1 MNIGIIG-AGFIGSTLAKQLVALGHQV 26 M + G AGFIG ++K+L+ GHQV Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQV 27
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 3e-09 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 14/131 (10%) Query: 38 RLRTQNIIKDAFMELLKEKTFSSITINHICEKAMIHRSTFYRHYEDKYELFS---DASNS 94 T+ I D + L ++ SS ++ I + A + R Y H++DK +LFS + S S Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 95 IAISLFEQT--KQGMDLERTLFEEIIEYIDV-----NRTLFFNITSKN----NSLELYEK 143 L + K D L E +I ++ R L I + + ++ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 144 LIQYGSKDLYE 154 + + Y+ Sbjct: 129 AQRNLCLESYD 139
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.7 bits (79), Expect = 6e-04 Identities = 33/230 (14%), Positives = 73/230 (31%), Gaps = 4/230 (1%) Query: 41 AEIKQHKQELDAKLQQHKENVDQTLNELNKVKENVDTKVNELHERKQVADEKINEIKQHK 100 A Q E L + + N T + + + + K Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 101 QELDAKLQQDKQIAEDKIAEIKEHKKQVEDKVAEVKEHKQNIDNKVNEIKEHKQTVDEKV 160 ++ KI ++ K +E + AE+++ + N +T++ + Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 161 NEMKQHKENIDQKVNELKEVKKQVDDKLAELKKAKQTAEDKLAELKE----NKPNTGNTL 216 + K ++++ + K+ L+ K E + AEL++ + Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 280 Query: 217 EELKKIKGNLDSLSANLELAKQDVKNKLAELQKAREDLLNKINEMKQTKQ 266 ++K ++ +L A + + A Q R DL KQ + Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Score = 34.7 bits (79), Expect = 6e-04 Identities = 26/215 (12%), Positives = 67/215 (31%) Query: 40 LAEIKQHKQELDAKLQQHKENVDQTLNELNKVKENVDTKVNELHERKQVADEKINEIKQH 99 L + + + ++ L + ++ + KI ++ Sbjct: 160 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 219 Query: 100 KQELDAKLQQDKQIAEDKIAEIKEHKKQVEDKVAEVKEHKQNIDNKVNEIKEHKQTVDEK 159 K L A+ ++ E + +++ AE + ++ Sbjct: 220 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 279 Query: 160 VNEMKQHKENIDQKVNELKEVKKQVDDKLAELKKAKQTAEDKLAELKENKPNTGNTLEEL 219 ++K + E +++ Q A + ++ + K+ + E+ Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Query: 220 KKIKGNLDSLSANLELAKQDVKNKLAELQKAREDL 254 K + + SL +L+ +++ K AE QK E Sbjct: 340 KISEASRQSLRRDLDASREAKKQLEAEHQKLEEQN 374
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 8e-05 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 22/102 (21%) Query: 359 NIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEQEEMDRIFDRFYKVDTARARN 418 N + I GG I + +V + + + G + Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK----------------- 308 Query: 419 VEGSGLGLSIVQKIVELHNGN---VSVYSTKGEGTTVRVELP 457 E +G GL V++ +++ G + + +G V +P Sbjct: 309 -ESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 82.2 bits (203), Expect = 2e-20 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MKMIHILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQEVLEKENIHLAIVDIMMPFV 60 M IL+ADDD IR +L+ L + G+ V + + + L + D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGYTLCEEIRK-YHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLR 119 + + L I+K D+PV++++A++ + K G DY+ KPF+ E+I + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RYQ 122 + Sbjct: 121 EPK 123
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 46.5 bits (110), Expect = 5e-09 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 15/158 (9%) Query: 1 MTTHIEKCTLKDIHKLQEISYETFNETF-KHQNSPENMHHYLEKAFNLKQLEKE------ 53 M + +KD +K E + F +N KQ E + Sbjct: 1 MIMKMTHLNMKDFNKPNE-PFVVFGRMIPAFENGVWTYTEERFSKPYFKQYEDDDMDVSY 59 Query: 54 LSNISSQFFFVYFNDAIAGYLKINTDDAQSEEMGDESLEVERIYIKSSFQKHGLGKYLLN 113 + F Y + G +KI ++ + +E I + ++K G+G LL+ Sbjct: 60 VEEEGKAAFLYYLENNCIGRIKIRSN-------WNGYALIEDIAVAKDYRKKGVGTALLH 112 Query: 114 NAMEIAIANNKKNIWLGVWEKNENAIAFYKKLGFVQAG 151 A+E A N+ + L + N +A FY K F+ Sbjct: 113 KAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 3e-06 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 11/121 (9%) Query: 21 IPAYEIEAKYINSTAIPRLY--------DTVPDIQSCDEIFYGYFYEDTLAGFISFKIE- 71 IPA+E + Y V ++ + + Y+ E+ G I + Sbjct: 27 IPAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNW 86 Query: 72 KDEVDIHRLVVSPDYFHKGIATKLLLYV--FDMFSPSKTYIVQTGKENTPALSLYKKHGF 129 I + V+ DY KG+ T LL + + +++T N A Y KH F Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146 Query: 130 I 130 I Sbjct: 147 I 147
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 59.1 bits (143), Expect = 9e-12 Identities = 42/316 (13%), Positives = 100/316 (31%), Gaps = 11/316 (3%) Query: 5 SIPIRFMLISSFFMSFGYFAVYAFLAIYLLSFLHFSTFQ--VGTVLTVIIITSRVIPLFS 62 + P+ +L + + G + L L +H + G +L + + Sbjct: 4 NRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 63 GLIADKIGYIIMMIAGLFLRGIGFIALGICSDFYTVSISSALIGFGTAFYEPAARAIFGS 122 G ++D+ G +++ L + + + + + I + G A A I Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI 123 Query: 123 QPAHLRKNLFTYLNLSFNCGAIIGPIAGGFLLLLDPIYAFSLTGSLMLLFALIFYLLKNH 182 R F +++ F G + GP+ GG + P F +L L L L Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 183 FQVTTESTSIALGIQTILQNKSFLLFSFIMIFFYIMFT-QLTVALPLHMKNISNSNQLA- 240 + + + + + + F QL +P + I ++ Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHW 243 Query: 241 -----TLVITINAITGVIF-MVLFRKLFHKYNTLSFIKYGILLMSISFLLIPLFQHPYWL 294 + + I + ++ + + + G++ ++L+ F W+ Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL-AFATRGWM 302 Query: 295 FICVIFFTIGETLVLP 310 ++ + +P Sbjct: 303 AFPIMVLLASGGIGMP 318
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 25.5 bits (56), Expect = 0.012 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 1 MRVLITGGNCGLGLQLVKVFHENGHIV 27 M+ L+TG +G + K E GH V Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQV 27
>cloacin#Cloacin signature. Length = 551 Score = 36.2 bits (83), Expect = 3e-04 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Query: 331 GNNGRGSQGNNGNQEGNNGRGSQGNTGHQQENNGRGSQGNNGNQEGNNGRGSQGNNGHQQ 390 G +GRG + GN G G G S G+ + E N G G+ H Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGV-----GGGASDGSGWSSENNPWGGGSGSGIHWG 57 Query: 391 ENNGRGSQGNNGNQEGNNGRGSQGN 415 +G G+ G NGN G +G G + Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 35.8 bits (82), Expect = 4e-04 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 393 NGRGSQGNNGNQEGNNGRGSQGNNGNQQGNNGRGSQGNNGNQEGNNGRGSQGNNGNQEGN 452 +GRG + GN G G G G S G+ + E N G G+ + G Sbjct: 5 DGRGHNTGAHSTSGNINGGPTG-----LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 453 NGRGSQGNNGNQEGNNGRGSQGN 475 +G G+ G NGN G +G G + Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLS 82 Score = 35.1 bits (80), Expect = 7e-04 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 363 NGRGSQGNNGNQEGNNGRGSQGNNGHQQENNGRGSQGNNGNQEGNNGRGSQGNNGNQQGN 422 +GRG + GN G G G S G+ + E N G G+ + G Sbjct: 5 DGRGHNTGAHSTSGNINGGPTGLGV-----GGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 423 NGRGSQGNNGNQEGNNGRGSQGN 445 +G G+ G NGN G +G G + Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLS 82 Score = 34.3 bits (78), Expect = 0.001 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 303 NGRGSQGNNGNQEGNNGRGSQGNNGHQQGNNGRGSQGNNGNQEGNNGRGSQGNTGHQQEN 362 +GRG + GN G G G G S G+ + E N G G+ H Sbjct: 5 DGRGHNTGAHSTSGNINGGPTG-----LGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Query: 363 NGRGSQGNNGNQEGNNGRGSQGN 385 +G G+ G NGN G +G G + Sbjct: 60 SGHGNGGGNGNSGGGSGTGGNLS 82 Score = 33.5 bits (76), Expect = 0.002 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 346 GNNGRGSQGNTGHQQENNGRGSQGNNGNQEGNNGRGSQGNNGHQQENNGRGSQGNNGNQE 405 G +GRG N G G ++G G N N G G+ + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN-----NPWGGGSGSGIHWG 57 Query: 406 GNNGRGSQGNNGNQQGNNGRGSQGN 430 G +G G+ G NGN G +G G + Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 33.1 bits (75), Expect = 0.003 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 376 GNNGRGSQGNNGHQQENNGRGSQGNNGNQEGNNGRGSQGNNGNQQGNNGRGSQGNNGNQE 435 G +GRG N G G ++G G N N G G+ + Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSEN-----NPWGGGSGSGIHWG 57 Query: 436 GNNGRGSQGNNGNQEGNNGRGSQGN 460 G +G G+ G NGN G +G G + Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLS 82 Score = 33.1 bits (75), Expect = 0.003 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 278 NNGRELQQGNNGRGSQGNKGHQQENNGRGSQGNNGNQEGNNGRGSQGNNGHQQGNNGRGS 337 N G GN G G G S G+ + E N G G+ H G +G G+ Sbjct: 10 NTGAHSTSGNINGGPTGLGV-----GGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGN 64 Query: 338 QGNNGNQEGNNGRGSQGNT 356 G NGN G +G G + Sbjct: 65 GGGNGNSGGGSGTGGNLSA 83 Score = 31.6 bits (71), Expect = 0.008 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Query: 316 GNNGRGSQGNNGHQQGNNGRGSQGNNGNQEGNNGRGSQGNTGHQQENNGRGSQGNNGNQE 375 G +GRG GN G G ++G +G ENN G +G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDG------SGWSSENNPWGGGSGSGIHW 56 Query: 376 -GNNGRGSQGNNGHQQENNGRGSQGNN 401 G +G G+ G NG+ G G+ GN Sbjct: 57 GGGSGHGNGGGNGNS--GGGSGTGGNL 81 Score = 31.2 bits (70), Expect = 0.010 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 421 GNNGRGSQGNNGNQEGNNGRGSQGNNGNQEGNNGRG-SQGNNGNQEGNN-GRGSQGNNGH 478 G +GRG + GN G G ++G G S NN G+ G G +GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 479 QQENNGRDSQGNSG 492 +S G SG Sbjct: 63 GNGGGNGNSGGGSG 76
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.9 bits (70), Expect = 0.006 Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 39 LETGTNKTVTT---NSIFNSCSISKFITTMLVLTLLEQEIVHLDEDVN---DRLTSWN 90 ++ + +T+T + F S K + VL ++ L+ ++ L ++ Sbjct: 45 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYS 102
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.001 Identities = 41/204 (20%), Positives = 70/204 (34%), Gaps = 30/204 (14%) Query: 2 FAQISAVIAFTPAIGPLIGGFLDQMFGFKIVFLSLVVMSVGIFLYTFVSLPETKTGSVTN 61 F +SA F GP++GG + F F + ++ FL LPE+ G Sbjct: 133 FGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRP 191 Query: 62 ----KINVFSVLKRLITNPKVVTYGL-------LIGGANGVLFSYYAEAPFIFIEYFQLS 110 +N + R VV + L+G L+ + E + F Sbjct: 192 LRREALNPLASF-RWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGE------DRFHWD 244 Query: 111 PSMYGF-LGIVVASASIIGAKVSKRLLATYKPEKIIYIGCLVMTGGAILLTVITALGSNP 169 + G L S+ A ++ + A + + +G + G ILL T Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATR----- 299 Query: 170 NIIYMIGFLIAMFILLLGIGVALP 193 +M + +LL G+ +P Sbjct: 300 --GWMA---FPIMVLLASGGIGMP 318
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 54.1 bits (130), Expect = 8e-12 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 1/104 (0%) Query: 9 LLLMIILVAFPQISETIYTPSLPDISKALHVSNNEVQLTLSVYFAGFALGVFFIGWLSDI 68 L+ + IL F ++E + SLPDI+ + + + F++G G LSD Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 69 IGRRPAMLFGIVLYGAGSFLCFIANS-IEVLLVSRFIQAFGASA 111 +G + +LFGI++ GS + F+ +S +L+++RFIQ GA+A Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAA 119
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 28.9 bits (64), Expect = 0.026 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 246 KEICTSLACEPALKSEVGNTRIMLNSLEDVLKLESYILEQYDFVLQALHDYKQSEMNADE 305 K I S+ +P SEV R++ + +E + K+ +Y L + D +L+ H Y N + Sbjct: 42 KNIDISIKYDPRKDSEVFANRVITDDIELLKKILAYFLPE-DAILKGGH-YDNQLQNGIK 99 Query: 306 KLKEYL 311 ++KE+L Sbjct: 100 RVKEFL 105
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1068 bits (2763), Expect = 0.0 Identities = 369/571 (64%), Positives = 454/571 (79%), Gaps = 2/571 (0%) Query: 1 MSFKMSRKQYADLYGPTTGDSIRLADTQLFAHIERNATVYGDEAVFGGGKSIRDGMGQNS 60 MS++MSR YA+++GPT GD +RLADT+LF +E++ T +G+E FGGGK IRDGMGQ S Sbjct: 1 MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQ-S 59 Query: 61 QLTREQGVVDVVITNAIIIDYTGIYKADIGIKDGKISAIGKSGNPSVMDNIDIIIGTSTE 120 Q+TRE G VD VITNA+I+D+ GI KADIG+KDG+I+AIGK+GNP + + II+G TE Sbjct: 60 QVTREGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTE 119 Query: 121 VISGERKIVTAGGIDTHVHFISPQQIDTALASGITTLIGGGTGPAEGTKATTITPGSWNL 180 VI+GE KIVTAGG+D+H+HFI PQQI+ AL SG+T ++GGGTGPA GT ATT TPG W++ Sbjct: 120 VIAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHI 179 Query: 181 RKMLEAAEAFPINLGFLGKGNSSSLPALEEQIFAGAIGLKIHEDWGATSSAINHSLQIAD 240 +M+EAA+AFP+NL F GKGN+S AL E + GA LK+HEDWG T +AI+ L +AD Sbjct: 180 ARMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVAD 239 Query: 241 KYDIQVAIHTDTLNECGFVEETIKAIDNRVIHTYHTEGAGGGHAPDIIKIAALNNILPSS 300 +YD+QV IHTDTLNE GFVE+TI AI R IH YHTEGAGGGHAPDII+I N++PSS Sbjct: 240 EYDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSS 299 Query: 301 TNPTLPYTVNTLDEHLDMLMVCHHLKANIPEDVMFADSRIRKETIAAEDILQDLGVFSMI 360 TNPT PYTVNTL EHLDMLMVCHHL IPED+ FA+SRIRKETIAAEDIL D+G FS+I Sbjct: 300 TNPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSII 359 Query: 361 SSDSQAMGRVGEVIIRNWQTADKMKKQIGSLEGDKEYNDNNRIQRYIAKYTINPAITHGI 420 SSDSQAMGRVGEV IR WQTADKMK+Q G L+ + NDN R++RYIAKYTINPAI HG+ Sbjct: 360 SSDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGL 419 Query: 421 SEYVGSIEVGKYADLVIWDPQFFGVKPDMVLKNGMVVMALMGDENASIPTPQPYYEKKMF 480 S +GS+EVGK ADLV+W+P FFGVKPDMVL G + A MGD NASIPTPQP + + MF Sbjct: 420 SHEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMF 479 Query: 481 GAYGKAVQSSSITFVSKVAYENNIKDKLGLNKVVLPVKNTRE-ISKQDMKLNNATPEIEV 539 GAYG++ +SS+TFVS+ + + + +LG+ K ++ V+NTR I K M N+ TP IEV Sbjct: 480 GAYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEV 539 Query: 540 DPQTYEVKVDGKVITCEAVDVLPMAQRYFLF 570 DP+TYEV+ DG+++TCE VLPMAQRYFLF Sbjct: 540 DPETYEVRADGELLTCEPATVLPMAQRYFLF 570
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.0 bits (86), Expect = 1e-04 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Query: 356 TVNSSYAINRGDVAGKIRVGRKADLVLWDAYNYAYVPYHYGVSHVNTVWKNGNIAY 411 T+N + A G + VG++ADLVLW+ P +GV + V G IA Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLVLWN-------PAFFGVK-PDMVLLGGTIAA 457
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.0 bits (65), Expect = 0.027 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 32/122 (26%) Query: 166 SVTRLPTRQPVGYGAGWS------LIVV---YRDSSYPMRNVSLFPGFLLSGTPQTISGF 216 V L + VGYG ++ + +V Y D YP R+ +GTP + G Sbjct: 241 GVQTLKAGERVGYGGRYTARDEQRIGIVAAGYAD-GYP-RHAP-------TGTPVLVDGV 291 Query: 217 FTPATGTVTARAFVMAVNGDPNF-TGDNFQLNSVTLTGPNNPSGNFFRGQVNDINGNLNT 275 T GTV+ + + P G V L G ++D+ T Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGT-----PVELWGKEIK--------IDDVAAAAGT 338 Query: 276 IG 277 +G Sbjct: 339 VG 340
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 40.1 bits (93), Expect = 9e-05 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 26/161 (16%) Query: 798 ITYTVTFTNNGTVPATNVVVTDPTPNGTIFVPNSVTIDGITTPGAAPSLGIPLGTISVGE 857 + Y + N GT A NVVV +P P DG L LG + GE Sbjct: 227 VVYKINIVNQGTATARNVVVENPVP------------DGYAHSSGQRVLTFTLGDMQPGE 274 Query: 858 TKTITYQVVVTNLPPDGIIRNQASFTYQYQPNPSEPPVTTTTTTPSVNIPINNPNPTTTK 917 +TIT + G N A+ +Y + + VTT P V + I + + Sbjct: 275 HRTITVEFCPLK---RGRATNIATVSY-CGGHKNTASVTTVINEPCVQVSIAGADWSY-- 328 Query: 918 SADRQVADIGDTITFTVTFQNRGTVPSTNVIIKDALPSGVS 958 + + + ++ N G + +V+++D L GV+ Sbjct: 329 --------VCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVT 361 Score = 39.7 bits (92), Expect = 1e-04 Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 53/291 (18%) Query: 1194 VTYTVTFTNQGTIPATGVTITDSLPPGTTFITNSVTVNNVAQPGVSPVTGIPVGTVNPGE 1253 V Y + NQGT A V + + +P G A V +G + PGE Sbjct: 227 VVYKINIVNQGTATARNVVVENPVPDG------------YAHSSGQRVLTFTLGDMQPGE 274 Query: 1254 TVTVTFQIQINAIPPNGKIENTASITYTSQPNPSEPPITTTETTPTVTLPVRTANPNPQK 1313 T+T + G+ N A+++Y + + +TT P V + + A Sbjct: 275 HRTITVEF---CPLKRGRATNIATVSYCGG-HKNTASVTTVINEPCVQVSIAGA------ 324 Query: 1314 TVDREFASIGDTLTYTITLQNTGNIPATDVIITDSVPTGTTFIL---GSITINGIPQPNL 1370 +++ + + Y I++ N G++ DV++ D++ G T + I+ N + Sbjct: 325 ----DWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVTVLEAAGAQISCNKVVWT-- 378 Query: 1371 TPETGIPVGTLNPRQIVTVTLEVQITTLPPNGIISNEANVTYTSQPDPTLPPITTTTPTP 1430 V LNP + + + V+ T G +N V S T T Sbjct: 379 -------VKELNPGESLQYKVLVRAQT---PGQFTNNVVVKSCSD---------CGTCTS 419 Query: 1431 IAETIVQNAELESTKTVDLPIAN---IGDALTYTITLENTGNIPMTNVSVI 1478 AE + +T + + +G+ Y I + N G+ TNVS++ Sbjct: 420 CAEATTYWKGVAATHMCVVDTCDPVCVGENTVYRICVTNRGSAEDTNVSLM 470 Score = 38.1 bits (88), Expect = 4e-04 Identities = 70/303 (23%), Positives = 104/303 (34%), Gaps = 53/303 (17%) Query: 389 KTASPQIADIGDIITYTITVPNTGNIAATNVIVTDPIPSSTTFIPNSVTINGTSQPGVNP 448 K P+ A + + Y I + N G A NV+V +P+P +G + Sbjct: 214 KQEGPENACLRCPVVYKINIVNQGTATARNVVVENPVP------------DGYAHSSGQR 261 Query: 449 SGGIQIGTIAAGNTVTVTFQVQVTSLPENGLIRNIGTTTFTYQPDPTKPAITTTNPTPPT 508 +G + G T+T + + G NI T ++ Sbjct: 262 VLTFTLGDMQPGEHRTITVEF---CPLKRGRATNIATVSYC--------------GGHKN 304 Query: 509 TTPVNTAITNPVKTADKTTVDIGDV---ITYTITFTNDGTIPATNVVFTDTIPTGTTFI- 564 T V T I P D V + Y I+ +N G + +VV DT+ G T + Sbjct: 305 TASVTTVINEPCVQVSIAGADWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVTVLE 364 Query: 565 -PNSVILNNVPVPNSNPALGIPVGTINPGETKTLSFQVLV-TQIPAGGVITNEASTTYTY 622 + I N V V +NPGE +L ++VLV Q P G TN Sbjct: 365 AAGAQISCNKVV--------WTVKELNPGE--SLQYKVLVRAQTP--GQFTNNVVVKSCS 412 Query: 623 QPDPTRPPVTTTEPTAPTTVSVNTATVNPTKSANRTFVDIGDVITYTISLQNNGTVPSTN 682 T T TT A + V +G+ Y I + N G+ TN Sbjct: 413 DCG------TCTSCAEATTYWKGVAATHMCVVDTCDPVCVGENTVYRICVTNRGSAEDTN 466 Query: 683 IVL 685 + L Sbjct: 467 VSL 469 Score = 36.6 bits (84), Expect = 0.001 Identities = 72/342 (21%), Positives = 120/342 (35%), Gaps = 61/342 (17%) Query: 271 ITYTITIPNNGNISATNVSITDPIPTGTTFIPNSVTVNGTAQSGVTPTNIPLGTIPAGQT 330 + Y I I N G +A NV + +P+P G SG LG + G+ Sbjct: 227 VVYKINIVNQGTATARNVVVENPVPDGYAH-----------SSGQRVLTFTLGDMQPGEH 275 Query: 331 TTVTFQVQVTSLPANGTITNEANVTFTSQPNPAEPPTTTTITPPPTTTSVRTAIVNPTKT 390 T+T + G TN A V++ T SV T I P Sbjct: 276 RTITVEF---CPLKRGRATNIATVSYCGGHK--------------NTASVTTVINEPCVQ 318 Query: 391 ASPQIADIGDI---ITYTITVPNTGNIAATNVIVTDPIPSSTTFIPNSVTINGTSQPGVN 447 S AD + + Y I+V N G++ +V+V D + T + G Sbjct: 319 VSIAGADWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVTVL---------EAAGAQ 369 Query: 448 PSGGIQIGTIAAGNT-VTVTFQVQVTSLPENGLIRNIGTTTFTYQPDPTKPAITTTNPTP 506 S + T+ N ++ ++V V + N+ + + T A TT Sbjct: 370 ISCNKVVWTVKELNPGESLQYKVLVRAQTPGQFTNNVVVKSCSDCGTCTSCAEATTYWKG 429 Query: 507 PTTTPVNTAITNPVKTADKTTVDIGDVITYTITFTNDGTIPATNVVF-----------TD 555 T + T V +G+ Y I TN G+ TNV + Sbjct: 430 VAATHMCVVDTC-------DPVCVGENTVYRICVTNRGSAEDTNVSLMLKFSKELQPVSF 482 Query: 556 TIPTGTTFIPNSVILNNVPVPNSNPAL--GIPVGTINPGETK 595 + PT T N+V+ +++P S + + + ++ G+ + Sbjct: 483 SGPTKGTITGNTVVFDSLPRLGSKETVEFSVTLKAVSAGDAR 524 Score = 36.2 bits (83), Expect = 0.002 Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 41/282 (14%) Query: 534 ITYTITFTNDGTIPATNVVFTDTIPTGTTFIPNSVILNNVPVPNSNPALGIPVGTINPGE 593 + Y I N GT A NVV + +P G + L +G + PGE Sbjct: 227 VVYKINIVNQGTATARNVVVENPVPDGYAH------------SSGQRVLTFTLGDMQPGE 274 Query: 594 TKTLSFQVLVTQIPAGGVITNEASTTYTYQPDPTRPPVTTTEPTAPTTVSVNTATVNPTK 653 +T++ + + G TN A+ +Y + TA T +N V + Sbjct: 275 HRTITVEFCPLK---RGRATNIATVSY----------CGGHKNTASVTTVINEPCVQVSI 321 Query: 654 SANRTFVDIGDVITYTISLQNNGTVPSTNIVLTDPIPNGTTFIPNSVTIDGVSQPNSNPE 713 + + + + Y IS+ N G + ++V+ D + G T ++ S + Sbjct: 322 AGA-DWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVT------VLEAAGAQISCNK 374 Query: 714 NGISIGTLNPNQAKTITFQVQVTSVPPNGIIENQGSVSFNYIVNPNEPPVTTTTPTPKTE 773 ++ LNP + ++ ++V V + P G + N +V T T+ T Sbjct: 375 VVWTVKELNPGE--SLQYKVLVRAQTP-------GQFTNNVVVKSCSDCGTCTSCAEATT 425 Query: 774 TQVGTVITAPTKSADKQVADLGDTITYTVTFTNNGTVPATNV 815 G T +G+ Y + TN G+ TNV Sbjct: 426 YWKGVAATHMCVVDTCDPVCVGENTVYRICVTNRGSAEDTNV 467 Score = 33.1 bits (75), Expect = 0.015 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 26/176 (14%) Query: 1841 KQANPQVINLGDTVTYTITFQNVGNINATDVIITDPTPSGTTFIPNSVTINGVTQPGTNP 1900 KQ P+ L V Y I N G A +V++ +P P +G Sbjct: 214 KQEGPENACLRCPVVYKINIVNQGTATARNVVVENPVP------------DGYAHSSGQR 261 Query: 1901 NNGVNVGTVTPGQIVTLTYQVTVTELPPDGIIKNTATVTYTFQPNPSEPPITITDPTPTV 1960 +G + PG+ T+T + + G N ATV+Y + T+ + P V Sbjct: 262 VLTFTLGDMQPGEHRTITVEFCPLK---RGRATNIATVSYCGGHKNTASVTTVIN-EPCV 317 Query: 1961 EVAVITPTPNPNKLADKQIVDINEIITYTVTFQNRGSVPATSVIITDPLANGLTFL 2016 +V++ A + + + Y ++ N G + V++ D L+ G+T L Sbjct: 318 QVSI----------AGADWSYVCKPVEYVISVSNPGDLVLRDVVVEDTLSPGVTVL 363 Score = 31.2 bits (70), Expect = 0.049 Identities = 53/227 (23%), Positives = 80/227 (35%), Gaps = 38/227 (16%) Query: 1722 ITYTISLQNTGTVPATNVLVTDPIPAGTTFIPNSVTINGIPQPGIVPSSGILIGTLEPNT 1781 + Y I++ N GT A NV+V +P+P G + +G ++P Sbjct: 227 VVYKINIVNQGTATARNVVVENPVPDGYAHSSGQRVLT------------FTLGDMQPGE 274 Query: 1782 SAVVTFQVQVTSIPPTGFIENEGIVSFQYQPDPTRPPVSVTTPTPTTKTQVSEVTINPNK 1841 +T + G N VS+ + SVTT QVS + + Sbjct: 275 HRTITVEFCPLK---RGRATNIATVSY---CGGHKNTASVTTVINEPCVQVSIAGADWSY 328 Query: 1842 QANPQVINLGDTVTYTITFQNVGNINATDVIITDPTPSGTTFIPNS---VTINGVT---- 1894 P V Y I+ N G++ DV++ D G T + + ++ N V Sbjct: 329 VCKP--------VEYVISVSNPGDLVLRDVVVEDTLSPGVTVLEAAGAQISCNKVVWTVK 380 Query: 1895 --QPGTNPNNGVNVGTVTPGQIVTLTYQVTVTELPPDGIIKNTATVT 1939 PG + V V TPGQ T V V G + A T Sbjct: 381 ELNPGESLQYKVLVRAQTPGQ---FTNNVVVKSCSDCGTCTSCAEAT 424
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.007 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%) Query: 90 LHMLFKGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERA----DLVG-EYIGH----- 139 L ++ G GTGK VAR + + G V A DL+ E GH Sbjct: 161 LTLMITGESGTGKELVARAL----HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 140 -TAQKTRD-LIKKAMGGILFIDE 160 AQ ++A GG LF+DE Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDE 239
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 97.2 bits (242), Expect = 3e-24 Identities = 68/320 (21%), Positives = 119/320 (37%), Gaps = 48/320 (15%) Query: 163 SVSFNPNNNPRYEKQGYLEAAPSG---INAPFAWGVRGGNGSDVTFVDMEYGWLLNHEDL 219 V P +++ + P G I AP W G G V +D G +H DL Sbjct: 4 KVHIIPYQV--IKQEQQVNEIPRGVEMIQAPAVWNQTRGRGVKVAVLDT--GCDADHPDL 59 Query: 220 VHQNIELMS--------GRNIDQHVGHGTSVLGIVSSEDNEVGNIGIAPKAKAKVISQIR 271 + I + + GHGT V G +++ +NE G +G+AP+A +I + Sbjct: 60 KARIIGGRNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLN 119 Query: 272 DNGQYNTADAILSAINQLEAGDVLLLEAQASFDGYGDKYLPVEVQPDIFDAIRAGTDKGV 331 G D I+ I V ++ S G D P++ +A++ + Sbjct: 120 KQGS-GQYDWIIQGIYYAIEQKVDII--SMSLGGPED-------VPELHEAVKKAVASQI 169 Query: 332 VIIEAGANGWNDLDQFKDRNGKQILNRNSKDFKDS--GAIMVGAGSSSFPHERMWFSNYG 389 +++ A N + D + + I VGA + FSN Sbjct: 170 LVMCAAGNEGDGDD-----------RTDELGYPGCYNEVISVGAINFD--RHASEFSNSN 216 Query: 390 SRIDVYGWGENVDTTTAEQSRSAVNLYTSSFSGTSSASPIIAGAATLVQSIAKENLGQPY 449 + +D+ GE++ +T ++FSGTS A+P +AGA L++ + Sbjct: 217 NEVDLVAPGEDILSTVPGG-------KYATFSGTSMATPHVAGALALIKQ-LANASFERD 268 Query: 450 RNNERIQANKVNFHTPMKGT 469 + A + P+ + Sbjct: 269 LTEPELYAQLIKRTIPLGNS 288
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 86.1 bits (213), Expect = 1e-19 Identities = 66/302 (21%), Positives = 110/302 (36%), Gaps = 82/302 (27%) Query: 195 IMGHVDHGKTTLLDSI-----RNSKVTAGEAG-------------GITQHIGAYQVEVND 236 ++ HVD GKTTL +S+ +++ + + G GIT G + + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 237 KKITFLDTPGHAAFTTMRARGAQVTDITILVVAADDGVMPQTVEAINHAKAAGVPIIVAV 296 K+ +DTPGH F R V D IL+++A DGV QT + + G+P I + Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 297 NKMDKPAANPDRVMQE-----------LTEYELVP----------EAWG----------- 324 NK+D+ + V Q+ + EL P E W Sbjct: 128 NKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLE 187 Query: 325 ----GDTI-----------------FVPI---SAIQGEGIDNLLEMI--LLVSEVEEYKA 358 G ++ P+ SA GIDNL+E+I S ++ Sbjct: 188 KYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQS 247 Query: 359 NPNRYATGTVIEAQLDKGKGTIATLLVQNGTLRVGDPIVVGTT--FGRVRAMVSDIGRRV 416 G V + + + + +A + + +G L + D + + S G Sbjct: 248 EL----CGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELC 303 Query: 417 KV 418 K+ Sbjct: 304 KI 305
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.017 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 399 KKRIAKGSGTTVQEINRLIKQFDDMKKMMKTMTGMQKGK 437 K++ G +V +IN KQ + + +TG+ G Sbjct: 154 DKQVNIAIGASVDQINNYAKQIASLNDQISRLTGVGAGA 192
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 51.6 bits (123), Expect = 1e-08 Identities = 41/274 (14%), Positives = 87/274 (31%) Query: 667 KQAKSSLLGRQRELEEWTSKLTDMEEKTTKLENFVKAVKQEIQEKEVQIRELRQSVEAER 726 ++ ++ ++ LE + T K LE A+ + E + A+ Sbjct: 116 QELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 175 Query: 727 VDEQKLREEISRLELEEHRINDRLSIYDLEIEGFLQDQVKMQGRKEELEKILATLQAEIT 786 + L E + LE + + L ++ K L A L+ + Sbjct: 176 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 235 Query: 787 ELDSKITALTKQKSEQHSSKEKVQKEMTELKVLAAEKQQRLSNQKEKVERLTKEKEETDA 846 + TA + + + K ++ EL+ + K++ L EK +A Sbjct: 236 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA 295 Query: 847 TLVKTKEDLAFLKQEMTSNSSGEEQITNMIEKKAYDRNQTSELIRSRREQRVSLQERVEQ 906 + L S + ++ + + E + R SL+ ++ Sbjct: 296 EKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA 355 Query: 907 LERNLKETTGKHKYILEMLKDQEVKINRLDVELE 940 K+ +H+ + E K E L +L+ Sbjct: 356 SREAKKQLEAEHQKLEEQNKISEASRQSLRRDLD 389 Score = 48.1 bits (114), Expect = 2e-07 Identities = 54/354 (15%), Positives = 115/354 (32%), Gaps = 15/354 (4%) Query: 175 KKAEGKLADTQENLNRVQDIIHELSSQVEPLERQASIAKDYLEKKEELEKVEAALIVHEI 234 + K +D N ++D EL+ ++ + + L +K +I Sbjct: 67 NTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKA-----------SKI 115 Query: 235 EELHEKWEALRNQFGHNKNEEAKMSTHLQKGEEELEELRGQLQAVDESVDSLQEVLLLSS 294 +EL + L N S ++ E E L + ++++++ S Sbjct: 116 QELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS 175 Query: 295 KELEKLEGQRELLKERKQNATTHCAQLEQLIVELTEKATSYDGEIESSTEVLMQFVNHVK 354 +++ LE ++ L+ R+ + K + + E + ++ Sbjct: 176 AKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 235 Query: 355 ELETKLHDNEQLLATFADNLEEQIENLKGDYIELLNQQASHRNELSMIEEQSKQQNSKNE 414 + + T LE + L+ EL N + + K ++ Sbjct: 236 GAMNFSTADSAKIKT----LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA 291 Query: 415 RLDEENAKYVEMRMEITAKKTKLVESYEQVKEKVAGILSNIQKTEAALGKCKAQYSENET 474 L+ E A + A + L + +E + + QK E +A Sbjct: 292 ALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351 Query: 475 KLYQAYQFVQQARSRKEMLEEMQEDYSGFYQGVREVLKARENRLQGIEGAVAEL 528 L + + +Q + + LEE + Q +R L A + +E A+ E Sbjct: 352 DLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEA 405 Score = 38.1 bits (88), Expect = 2e-04 Identities = 26/159 (16%), Positives = 55/159 (34%) Query: 154 SEERRGVFEEAAGVLKYKLRKKKAEGKLADTQENLNRVQDIIHELSSQVEPLERQASIAK 213 E+ + A + K + + L + + + +E A Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 214 DYLEKKEELEKVEAALIVHEIEELHEKWEALRNQFGHNKNEEAKMSTHLQKGEEELEELR 273 K + + E A + EL + E N + + + E E +L Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 274 GQLQAVDESVDSLQEVLLLSSKELEKLEGQRELLKERKQ 312 Q Q ++ + SL+ L S + ++LE + + L+E+ + Sbjct: 302 HQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Score = 34.3 bits (78), Expect = 0.003 Identities = 37/172 (21%), Positives = 73/172 (42%) Query: 677 QRELEEWTSKLTDMEEKTTKLENFVKAVKQEIQEKEVQIRELRQSVEAERVDEQKLREEI 736 ++ LE + T K LE A++ E + E Q + L + ++ R D RE Sbjct: 266 EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAK 325 Query: 737 SRLELEEHRINDRLSIYDLEIEGFLQDQVKMQGRKEELEKILATLQAEITELDSKITALT 796 +LE E ++ ++ I + + +D + K++LE L+ + ++ +L Sbjct: 326 KQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385 Query: 797 KQKSEQHSSKEKVQKEMTELKVLAAEKQQRLSNQKEKVERLTKEKEETDATL 848 + +K++V+K + E A ++ +E + KEK E A L Sbjct: 386 RDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKL 437 Score = 31.2 bits (70), Expect = 0.025 Identities = 71/454 (15%), Positives = 145/454 (31%), Gaps = 22/454 (4%) Query: 393 ASHRNELSMIEEQSKQQNSKNERLDEENAKYVEMRMEITAKKTKLVESYEQVKEKVAGIL 452 S + L ++E++ + +N L +N+ + +L E KEK+ Sbjct: 46 RSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKND 105 Query: 453 SNIQKTEAALGKCKAQYSENETKLYQAYQFVQQARSRKEMLEEMQEDYSGFYQGVREVLK 512 ++ + + + + +A+ ++ E L A F ++ + LE + + + + L+ Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 513 ARENRLQGIEGAVAELLTVPKEYEIAMEIALGAAMQHIVVQKEEHARNAIAFLKQNKHGR 572 N + L E A Q + + E A N Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALE---------ARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 573 ATFLPQAVIKGRSLSFEQLRIVNQHPSFVGVAAELVQYNNKYENVVSNLLGTVIVAKDLR 632 + L +N + L E + L K L Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAEL------EKALE 270 Query: 633 GANELAKQLQYRYRIVTIEGDVVNPGGSMTGGAVKQAKSSLLGRQRELEEWTSKLTDMEE 692 GA + + + + E + + + ++ +R+L+ +E Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 693 KTTKLENFVKAVKQEIQEKEVQIRELRQSVEAERVDEQKLREEISRLELEEHRINDRLSI 752 + KLE K + Q + R++ + + QKL E+ E + L Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL-- 388 Query: 753 YDLEIEGFLQDQVKMQGRKEELEKILATLQAEITELDSKITALTKQKSEQHSSKEKVQKE 812 + + + +++ EE LA L+ EL+ K+K+E + E K Sbjct: 389 -----DASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKA 443 Query: 813 MTELKVLAAEKQQRLSNQKEKVERLTKEKEETDA 846 + E AE+ +L K + K A Sbjct: 444 LKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKA 477
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.8 bits (75), Expect = 0.003 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 20/83 (24%) Query: 17 IVATDLLVQDGKIAKV--AEN---------ITADNAEVIDVNGKLIAPGLVDVHVHLREP 65 IV D+ ++DG+IA + A N I EVI GK++ G +D H+H P Sbjct: 83 IVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFICP 142 Query: 66 GGEHKETIETGTLAAAKGGFTTI 88 + IE A G T + Sbjct: 143 -----QQIEE----ALMSGLTCM 156
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.6 bits (69), Expect = 0.002 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 63 AFSSVKEKKKEKGKEKDTRTEEEKTADVMGQMLSFFKKLDVEQ----MQHHLANVTSA-I 117 FS KE +K K D++ + + Q LS +L+ +Q + L+N + + Sbjct: 59 VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISL 118 Query: 118 GSVQQVFQQFQGKRTQQ 134 ++ + + ++Q Sbjct: 119 SQLKAYLEGKSEEPSEQ 135
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 181 bits (461), Expect = 2e-51 Identities = 101/476 (21%), Positives = 195/476 (40%), Gaps = 96/476 (20%) Query: 8 LRNIAIIAHVDHGKTTLVDQLLRQAGTFRANEHVEE--RAMDSNDLERERGITILAKNTA 65 + NI ++AHVD GKTTL + LL +G V++ D+ LER+RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 66 IHYEDKRINILDTPGHADFGGEVERIMKMVDGVLLVVDAYEGCMPQTRFVLKKALEQNLT 125 +E+ ++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + + Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 126 PIVVVNKIDRDFARPDEVVDEVIDLF---------IELG-------------------AN 157 I +NKID++ V ++ + +EL N Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 158 EDQLE--------------------------FPVVFASAMNGTASLDSNPANQEENMKSL 191 +D LE FPV SA N + +L Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNN------------IGIDNL 230 Query: 192 FDTIIEHIPAPIDNSEEPLQFQVALLDYNDYVGRIGVGRVFRGTMKVGQQVALMKVDGSV 251 + I + + L +V ++Y++ R+ R++ G + + V + + + Sbjct: 231 IEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKE--- 287 Query: 252 KQFRVTKLFGYMGLKRQEIEEAKAGDLVAVSGMEDINVGETVCPVEHQDALPLLRIDEPT 311 + ++T+++ + + +I++A +G++V + E + + + + + P Sbjct: 288 -KIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPL 345 Query: 312 LQMTFLVNNSPFAGREGKYITSRKIEER------LRSQLETDVSLRVDNTESPDAWIVSG 365 LQ T + K ++R L ++D LR + I+S Sbjct: 346 LQTT---------------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSF 390 Query: 366 RGELHLSILIENMRRE-GYELQVSKPEVIIKEVDGVRCEPVERVQIDVPEEYTGSI 420 G++ + + ++ + E+++ +P VI E + E +++ P + SI Sbjct: 391 LGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 39.8 bits (93), Expect = 3e-05 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 403 EPVERVQIDVPEEYTGSIMESMGARKGEMLDMVNNGNGQVRLTFMVPARGLIGYTTEFLT 462 EP +I P+EY ++D N +V L+ +PAR + Y ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNN-EVILSGEIPARCIQEYRSDLTF 595 Query: 463 LTRGYGILNHTFDCYQP 479 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHV 612
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.034 Identities = 14/38 (36%), Positives = 18/38 (47%) Query: 45 VVEIPSPVKGKVLEVLVEEGTVAVVGDTLIKFDAPGYE 82 EI V E++V+EG GD L+K A G E Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAE 133
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 30.4 bits (68), Expect = 0.004 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 18/42 (42%) Query: 130 YTLAHEIGHILFTRRVHGKLTHADPHSPTGSEHHPSPTNLMY 171 +AHE+GHIL G+EH + +LMY Sbjct: 352 GVMAHELGHIL------------------GAEHTDNSKDLMY 375
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 122 bits (306), Expect = 6e-35 Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 16/262 (6%) Query: 72 VTNRVVFLTGAASGIGYEMGHAFAKEGAKVVITDRLEERAKEAAEQLQKEGFQAIGLKCD 131 + ++ F+TGAA GIG + A +GA + D E+ ++ L+ E A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 132 VTSEEEIEASISQTVTHFGSLDILINNAGMQHVSPIEDFPTEKFELLIKIMQIAPFIAIK 191 V I+ ++ G +DIL+N AG+ I E++E + F A + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 192 HAFPIMKKQKYGRIINVASINGLVGFAGKSAYNSAKHGVIGLTKVAALEGATHGITVNAL 251 M ++ G I+ V S V +AY S+K + TK LE A + I N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 252 CPGYVDTPLVRNQLQDLATTRNVPLENVLEEVI------YPL-VPQKRLLQVQEIADYAI 304 PG +T + + D EN E+VI + +P K+L + +IAD + Sbjct: 186 SPGSTETDMQWSLWAD---------ENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 305 FLASEKAKGITGQAVVIDGGYT 326 FL S +A IT + +DGG T Sbjct: 237 FLVSGQAGHITMHNLCVDGGAT 258
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.6 bits (71), Expect = 3e-04 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 9/47 (19%) Query: 21 GAIMEELEVGVLGFVASCVSALLF--------GLFG-AIPVSILCAF 58 + LE S V ALLF G++G AI ILC++ Sbjct: 461 KPLFLTLEKKAADAGVSYVVALLFSLLAGTTLGIWGIAIVTGILCSY 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 7e-05 Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 6/111 (5%) Query: 104 KENKEAAEQEETVVEATPKKEVIVEAPKAVTPAPKTVTRVETPATAPTPKPTPAPT--PK 161 E KE A E+ +A + E E PK + + ET P PT K Sbjct: 1098 TETKETATVEKEE-KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK 1156 Query: 162 PVSVEAAVELSTPAPVK---REVPTPVTKQETAPVAPAKPKQPALTETNSK 209 + T P K V PVT+ T + + P T + Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 30.0 bits (67), Expect = 0.011 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 10/97 (10%) Query: 105 ENKEAAEQEETVVEATPKKEVIVEAPKAVTPAPKTVTRV----------ETPATAPTPKP 154 E ++ E + + +PK+E PA + V T T K Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 155 TPAPTPKPVSVEAAVELSTPAPVKREVPTPVTKQETA 191 T + +PV+ V E TP T Q T Sbjct: 1175 TSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 30.0 bits (67), Expect = 0.008 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 93 VIVSEDHPNMPKTVTEAYRVISQGLLDGFKALGLE-AYYAVPKTEADRENLKNPRSG-VC 150 V V + +P+T AY + K LGLE A Y + R N+ +P S Sbjct: 140 VTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI------RCNIVSPGSTETD 193 Query: 151 FDAPSWYEIVVEGRKIAGSAQTRQKGVILQHGSIPLEI 188 W + + I GS +T + G+ L+ + P +I Sbjct: 194 MQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDI 231
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.3 bits (151), Expect = 2e-14 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 6/166 (3%) Query: 2 TANRIKAVALSHFARYGYEGTSLANIAQEVGIKKPSIYAHFKGKEELYFICLESALQKDL 61 T I VAL F++ G TSL IA+ G+ + +IY HFK K +L+ E + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 62 QSFTGDIEKFSNSSTEELLLQLLKGYAKRFGESEESMFWLRTSYFPPDAFRE-QIINK-- 118 + KF +L ++L + E + + + E ++ + Sbjct: 72 ELELEYQAKFP-GDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 119 ANVHIENVGKLLFPVFKRASEQDELH-NIEVKDALEAFLCLLDGLM 163 N+ +E+ ++ K E L ++ + A + GLM Sbjct: 131 RNLCLESYDRIE-QTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 41.5 bits (97), Expect = 2e-07 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 1 MKQKGFTLLEMLLVLFAISVLSMVTYFHVHSLYEKQKIEQFLRQFSNDILYMQQLAINRQ 60 M+Q+GFTLLEM+L+L + V + + + + + R F + ++QQ + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR-FEAQLRFVQQRGLQTG 59 Query: 61 KHYTLRWHKDRHMYY 75 + + + H DR + Sbjct: 60 QFFGVSVHPDRWQFL 74
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 53.0 bits (127), Expect = 2e-12 Identities = 18/65 (27%), Positives = 41/65 (63%) Query: 1 MQNEEGFTLLEMLLVMVVITVLLLLIIPNVVTQRSSVEGKGCKAYVKSIEAQIQVYQLQH 60 + GFTLLE+++V+V+I VL L++PN++ + + + + + ++E + +Y+L + Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 61 NKIPS 65 + P+ Sbjct: 64 HHYPT 68
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 88.3 bits (219), Expect = 1e-21 Identities = 64/352 (18%), Positives = 146/352 (41%), Gaps = 16/352 (4%) Query: 2 FKKIWSLSDQVILLKRLGELLEKGYSLLQALEFLRFQLPLEKKVQLQHMIDGLKN----G 57 K S SD +L ++L L+ L +AL+ + Q +K L ++ +++ G Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQS---EKPHLSQLMAAVRSKVMEG 117 Query: 58 KSLHDSFHQLKFHQEMLSYLFYA-----EQHGDISFALQQGSALLYKKDKYRKDMMKIMQ 112 SL D+ +K L+ A E G + L + + ++ + R + + M Sbjct: 118 HSLADA---MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMI 174 Query: 113 YPMFLAFFLIIMILIFNRILLPQVDMVYSSFGSTAPLFTEQILSTIKLLPYLIFSTIFIV 172 YP L I ++ I +++P+V + PL T ++ + + + Sbjct: 175 YPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLAL 234 Query: 173 MVGCSVYILYFRKLPH-MKRVKIILRIPLVKTFLILKHSHYFATQLSGLLHGGLSVLEAL 231 + G + + R+ + + +L +PL+ ++ +A LS L + +L+A+ Sbjct: 235 LAGFMAFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAM 294 Query: 232 TIMMEQKYQPFFQYEAGRVKHQLIAGEPLQSIIAKSGYYEEELSYIITHGQANGNLAIEL 291 I + + ++ + G L + ++ + + ++I G+ +G L L Sbjct: 295 RISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSML 354 Query: 292 GDYSDLIMEKMEQKIKRMLVIIQPILFTCIGAIVVLMYLAMIMPMFQMMNSI 343 +D + ++ L + +P+L + A+V+ + LA++ P+ Q+ + Sbjct: 355 ERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.011 Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 33 LGLVGPNGSGKSTLLKCLLG 52 + L G G GKSTL+ L+G Sbjct: 599 VVLEGTGGIGKSTLINTLVG 618
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 28.7 bits (64), Expect = 0.016 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%) Query: 123 TPAASSSGIGSFFSNLISNPTTMINNI 149 P + +G+ +F NL P M+N Sbjct: 63 VPQPARNGLSNFTGNL-EEPAVMVNYF 88
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.0 bits (75), Expect = 4e-04 Identities = 17/90 (18%), Positives = 32/90 (35%) Query: 8 GIQYMQEGNWEEAAKNFTEAIEENPKDALGYINFANLLDVLGDSERAILFYKRALELDDK 67 Q G +E+A K F + D+ ++ +G + AI Y +D K Sbjct: 43 AFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIK 102 Query: 68 SAAAYYGLGNVYYGQEQFAEAKAVFEQAMQ 97 + + + AEA++ A + Sbjct: 103 EPRFPFHAAECLLQKGELAEAESGLFLAQE 132 Score = 29.9 bits (67), Expect = 0.005 Identities = 17/96 (17%), Positives = 28/96 (29%) Query: 109 LGITHVQLGNDRLALPFLQRATELDENDVEALFQCGLCFARLEHIQEAKPYFEKVLEMDE 168 L Q G A Q LD D G C + A + MD Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 169 EHADAYYNLGVAYVFEEKNEKALALFKKATEIQPDH 204 + ++ + + + +A + A E+ D Sbjct: 102 KEPRFPFHAAECLLQKGELAEAESGLFLAQELIADK 137
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.8 bits (64), Expect = 0.043 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 8/123 (6%) Query: 114 GFEVTYLPVDETGRVQVSDIQKAL-TEETILVSIMFGNNEVGTMQPIAEIGKLLKEHQAY 172 G++ + E +S K E ++L++ + +G + + G ++Y Sbjct: 444 GYDARHAAFLEDNFKILSQYNKEYSVERSVLITQQHWDTLIGELAGVTRNGDKTLSGKSY 503 Query: 173 FHTDAVQAYGLVEIDVKEFGIDLLSISAHKINGPKGVGFLYASADVKF-EPLLIGGEQER 231 D + +E EF + I+ S +KF PLL GE+ R Sbjct: 504 --IDYYEEGKRLEKKXDEFQKQVFDPLKGNIDLSDSKS----STLLKFVTPLLTPGEEIR 557 Query: 232 KRR 234 +RR Sbjct: 558 ERR 560
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 270 bits (692), Expect = 1e-86 Identities = 98/312 (31%), Positives = 162/312 (51%), Gaps = 20/312 (6%) Query: 449 INFVNVGHKFLIFSLVVVIAGAIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFK 508 +F ++V++IA I+ + LN GIDF GT I +S A+ V + Sbjct: 14 FDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVYRAALE 73 Query: 509 ELNID---VKEENIVPTGDDNKGFAVR-----------TLGVLSKDEIAKTKTFFH--DK 552 L + + E +D +R G ++ + K +T D Sbjct: 74 PLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVETALTAVDP 133 Query: 553 YGTDPNVSTVSPTIGKEIARNAFIAVLIASAVIILYVSIRFRFTYALSAVLALLHDAFVM 612 + +V P + E+ A ++L A+ VI+ Y+ +RF + +AL AV+AL+HD + Sbjct: 134 ALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLT 193 Query: 613 IVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVTFDRNRELYKQKKRVRDIKDLEEIVNAS 672 + +F++ QL+ DLT +AA+LTI GYSIND++V FDR RE + K L +++N S Sbjct: 194 VGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKT----MPLRDVMNLS 249 Query: 673 IRQTLGRSINTVLTVLFPVLALLIFGSESLRNFSFALLVGLVVGTYSSVFVASQIWLMLE 732 + +TL R++ T +T L ++ +LI+G + +R F FA++ G+ GTYSSV+VA I L + Sbjct: 250 VNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIG 309 Query: 733 NRRLKKGKNKKK 744 R K+ K+ Sbjct: 310 LDRNKEKKDPSD 321 Score = 66.4 bits (162), Expect = 1e-13 Identities = 38/180 (21%), Positives = 84/180 (46%), Gaps = 11/180 (6%) Query: 249 SVGAKFGQQALEQTIFASAIGIALIFLFMLV-FYRLPGLVAVIMLGLYIFVTLLVFNWMH 307 SVG K + + +++ +I ++ V F L AV+ L + +T+ +F + Sbjct: 142 SVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQ 201 Query: 308 AVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMM------SAFRAGNHRSLATI 361 L +AAL+ G +++ ++ ++RL+E L K+M + R++ T Sbjct: 202 LKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTG 261 Query: 362 LDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLLSLLVKSRYFDKK 421 + TTL A + ++G ++GF +++ + G ++V+ + ++ + R +KK Sbjct: 262 M----TTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVLFIGLDRNKEKK 317
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 26.4 bits (58), Expect = 0.043 Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 14 GIVILLILATVTSMIMALLLKFTDLNEGTLAVTIFILALLSMLISGFTAGKKAQGKGWLV 73 G +I +A SM+ ++ L+ + I +S++I G+ G +G L Sbjct: 265 GGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLY 324 Query: 74 GFTTGLTFTILVFLV 88 G+TF + FL Sbjct: 325 VLNIGVTFLSVSFLT 339
>PF06580#Sensor histidine kinase Length = 349 Score = 27.5 bits (61), Expect = 0.005 Identities = 8/39 (20%), Positives = 19/39 (48%) Query: 7 NIVMIVAMFAIFYFLLIRPQQKRQKAVAQMQSELKKGDA 45 N+V++ M+++ YF + +Q + Q + +A Sbjct: 123 NVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEA 161
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.6 bits (56), Expect = 0.016 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 1 MTEMPKLLITAGILLIVVGLAWKFIGRLPGDIFVKKGNVTFYFPVITCIVLSIVLSFIM 59 M+++ L+ ++L V + F G G I+ + F +++ + LS++++ I+ Sbjct: 435 MSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ-----FSITIVSAMALSVLVALIL 488
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 497 bits (1281), Expect = e-180 Identities = 194/336 (57%), Positives = 252/336 (75%), Gaps = 5/336 (1%) Query: 4 FGGFTRDLGIDLGTANTLVYVKGKGVVLREPSVVALQTD----TKQIVAVGSDAKQMIGR 59 G F+ DL IDLGTANTL+YVKG+G+VL EPSVVA++ D K + AVG DAKQM+GR Sbjct: 6 RGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGR 65 Query: 60 TPGNVVALRPMKDGVIADYETTATMMKYYIQQAQKSNGFFSRKPYVMVCVPSGITAVERR 119 TPGN+ A+RPMKDGVIAD+ T M++++I+Q SN F P V+VCVP G T VERR Sbjct: 66 TPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQV-HSNSFMRPSPRVLVCVPVGATQVERR 124 Query: 120 AVIDATRQAGARDAYPIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTS 179 A+ ++ + AGAR+ + IEEP AAAIGA LPV E TGSMVVDIGGGTTEVA+ISL G+V S Sbjct: 125 AIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYS 184 Query: 180 QSVRVAGDDMDDSIIQYIKKSYNLMIGERTAEALKLEIGSAGEPEGIEPMEIRGRDLVSG 239 SVR+ GD D++II Y++++Y +IGE TAE +K EIGSA + + +E+RGR+L G Sbjct: 185 SSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEG 244 Query: 240 LPKTVLIQPEEIADALKDTVDAIVESVKNTLEKTPPELAADIMDRGIVLTGGGALLRNLD 299 +P+ + EI +AL++ + IV +V LE+ PPELA+DI +RG+VLTGGGALLRNLD Sbjct: 245 VPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLD 304 Query: 300 KVISEETNMPVLVAEDPLDCVAIGTGKALDNIDLFK 335 +++ EET +PV+VAEDPL CVA G GKAL+ ID+ Sbjct: 305 RLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHG 340
>ENTEROVIROMP#Enterobacterial virulence outer membrane protein signature. Length = 171 Score = 30.3 bits (68), Expect = 0.007 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 25/157 (15%) Query: 146 TVLAKTAVSQAKAGADIIAPSNMMDGFVTAIRHALDENGFGHVPVMSYAVKYSSAFYGPF 205 +V A + V+ A +D N M GF R+ D + G + +Y K +A G + Sbjct: 21 SVAATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDY 80 Query: 206 RDAAHGAPQFGDRKTYQMDPANRME-----------AFREAESDVMEGADFLIVKPALSY 254 + G PA R+ + + ++ SY Sbjct: 81 NKNQYYGITAG--------PAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFSY 132 Query: 255 LDIVRDVKNNFN-LPVVAYNVSGEYSMIKAAAQNGWI 290 ++ FN + VA + S E S I++ WI Sbjct: 133 GAGLQ-----FNPMENVALDFSYEQSRIRSVDVGTWI 164
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 27.9 bits (62), Expect = 0.027 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 13/90 (14%) Query: 58 KTQTLNFFLINEMMHFVDVPGYGYAKVSKTERAAWGKMIETYFTTREQLDAAVLVVDLRH 117 +T +F N ++ +D PG+ +++ R+ LD A+L++ + Sbjct: 57 QTGITSFQWENTKVNIIDTPGH-MDFLAEVYRSL------------SVLDGAILLISAKD 103 Query: 118 KPTNDDVMMYDFLKHYDIPTIIIATKADKI 147 +++ L+ IPTI K D+ Sbjct: 104 GVQAQTRILFHALRKMGIPTIFFINKIDQN 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.1 bits (86), Expect = 2e-04 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 14/101 (13%) Query: 349 LCLVGPPGVGKTSLARSI-ATSLNRN--FVRVSLGGVRD---ESEIRGHRRTYVGAMPGR 402 L + G G GK +AR++ RN FV +++ + ESE+ GH + GA G Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEK---GAFTGA 219 Query: 403 IIQGMKKAKSVNP-VFLLDEIDKMSNDFRGDPSAALLEVLD 442 + + + LDEI M D + LL VL Sbjct: 220 QTRSTGRFEQAEGGTLFLDEIGDMPMDAQ----TRLLRVLQ 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 2e-10 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 41/214 (19%) Query: 44 ELEQLRKMREISLTEPLAEKVR----PTSFLDIVGQEDGIKSLK--AALCGPNPQHVIIY 97 +L +L + +L EP + + +VG+ ++ + A ++I Sbjct: 107 DLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166 Query: 98 GPPGVGKTAAARLVLEEAKRNPKSPFRTNATFIELDATTARFDERGIADPLIGSVHDPIY 157 G G GK AR + + KR F+ ++ A I L G Sbjct: 167 GESGTGKELVARALHDYGKRRNGP-------FVAINM--AAIPRDLIESELFGHE----- 212 Query: 158 QGAGAMGQAGIPQPKKGAVTDAHGGILFIDEIGELHPIQMNKMLKVLEDRKVFLESAYYS 217 GA G G A GG LF+DEIG++ ++L+VL+ + Sbjct: 213 --KGAF--TGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGG--- 265 Query: 218 EENTMIPTYIHDIFQKGLPADFRLVGATTRSPDE 251 + + +D R+V AT + + Sbjct: 266 --------------RTPIRSDVRIVAATNKDLKQ 285
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 29.6 bits (66), Expect = 0.035 Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 10/217 (4%) Query: 121 DLPLDFESKINIIKSDWIKLQEKIKFIESMKNEIVELKTRQKTLKNDLKQIDKKVKTLSI 180 DL E +N +D K++ +++ EL+ + N K+KTL Sbjct: 159 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE- 217 Query: 181 VDSMDDYAKKYKKYRKEYSDLQNDIYELEFVKKQYEKNIENLVGKVEQIKKFNDIEQFFE 240 A + K N K E L + +++K + F Sbjct: 218 -AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 241 QLIEYFPDKISKSKDEVQDFYEYMVENRGAYFTLR------IQEISMEIKKLKNEIQNVK 294 + K ++ + R + K+L+ E Q ++ Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Query: 295 FKLDVYSKSFKKSDILNDINAINSEKDIIYKELNQVE 331 + + S + + D++A K + E ++E Sbjct: 337 EQNKISEASRQ--SLRRDLDASREAKKQLEAEHQKLE 371
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 40.0 bits (93), Expect = 2e-06 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 17 VIRKTSFSQLKIDEIAKYMDISKATLYKRFSSKDEIIEAVVEDFMNYLLEGDADNQDE-S 75 + + S + EIAK +++ +Y F K ++ + E + + E + + Q + Sbjct: 23 LFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFP 82 Query: 76 MSFAERFQKTFIHSLKC 92 ++ IH L+ Sbjct: 83 GDPLSVLREILIHVLES 99
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 31.2 bits (70), Expect = 0.017 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 11/153 (7%) Query: 233 KEKYHLARNELNDLLSEKGGNSTGVSVLVKEYPNEKIFEDENDLDIIYQTEGSFSIIYNI 292 K+ L + D ++ + + S+L K +P I+ E D I+ F I + Sbjct: 206 KDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGYTIY--ERDSSIVTHDNDIFRTILPM 263 Query: 293 ---FNEQYETLKEIYDVVKHSDILVWSNDYIKSINEKIYLQEFQEQLVQPFRENESKVLI 349 F + + ++ Y + K S + N+ I+EK Y+ + E+ PF + K+ Sbjct: 264 DQEFTYRVKNREQAYRINKKSGLNEEINN-TDLISEKYYVLKKGEKPYDPFDRSHLKLFT 322 Query: 350 VQSQDIKSLERKNDLLK-EELKEIKSLNLDSKE 381 ++ D+ + N+LLK E+L NLD ++ Sbjct: 323 IKYVDVDT----NELLKSEQLLTASERNLDFRD 351
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 111 bits (279), Expect = 6e-33 Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 10/192 (5%) Query: 5 RPKYNQIIDAAVIVIAENGYHQAQVSKIAKQAGVADGTIYLYFKNKEDILISLFQEKMGE 64 + I+D A+ + ++ G + +IAK AGV G IY +FK+K D+ +++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 65 FVETIRQKTAGIESAVSKLFMLVETHFLLLSQNDPL--AIVTQLELRQSNQELRLKINEV 122 E + A + + H L + + ++ + + + + Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 123 LKGY----LQVMDEILETGIKQGEFRADLNVRVARQMIFGTVDEVVTNWVMSDHKYDLVA 178 + +++ L+ I+ ADL R A ++ G + ++ NW+ + +DL Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL-- 187 Query: 179 LSKTVHGLLIAA 190 K +A Sbjct: 188 --KKEARDYVAI 197
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 46.3 bits (109), Expect = 5e-07 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%) Query: 141 ITPIHVEKPNEK--------EDPANKPDPNEKPDPSQKPDQKPDPDQQPNSNTIADGE 190 +TP E PN + E+PAN P PNE +P +P+ +PDPD P++N DG+ Sbjct: 315 LTPGSAEAPNAQPLPEVSPAENPANNPAPNE--NPGTRPNPEPDPDLNPDANPDTDGQ 370
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 37.4 bits (86), Expect = 2e-04 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 518 KIENMIAKLEE-------SQKNAERDWNEAEALRKQSEKLHREL--QRQIIEFNEERDER 568 ++E KLEE S+++ RD + + +KQ E H++L Q +I E + + R Sbjct: 327 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 386 Query: 569 LLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK--DHELIEAKSRLEGAAPEL 624 L A +E +++VE A +EA + L +L K + K + E E +++LE A L Sbjct: 387 DLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKAL 444
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 24.3 bits (53), Expect = 0.031 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%) Query: 19 DQLQETIVDAIQSGEEKMLPGLGVLFEVIWKNA 51 D + + + GE+ L G G FEV + A Sbjct: 27 DAVFSAVSSYLAKGEKVQLIGFGN-FEVRERAA 58
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 148 bits (375), Expect = 6e-41 Identities = 92/421 (21%), Positives = 183/421 (43%), Gaps = 14/421 (3%) Query: 87 TSMPIENVNVKAVVTVLILGMFVSILNQTIINVALPPLMNEFNVSTSTAQWLITGFMLVN 146 TS N+ ++ L + F S+LN+ ++NV+LP + N+FN ++ W+ T FML Sbjct: 3 TSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTF 62 Query: 147 GILVPISAFLVSRFTYRKLFVAAMLFFTVGSIICATSGN-FTMMMTGRIIQAVGAGILMP 205 I + L + ++L + ++ GS+I + F++++ R IQ GA Sbjct: 63 SIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA 122 Query: 206 VGMNIFMTLFPPHKRGAAMGLLGVAMILAPAIGPTVTGWVIENYSWNLMFYAMFIIGLII 265 + M + P RG A GL+G + + +GP + G + W+ + I II Sbjct: 123 LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMI--TII 180 Query: 266 TFLSLKFFTLAQPVSKTKLDVFGVISSSIGLGSLLYGFSEAGNNSWTSAEVVISLVIGVI 325 T L + K D+ G+I S+G+ + + S + L++ V+ Sbjct: 181 TVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLF---TTSYSIS------FLIVSVL 231 Query: 326 GLALFIWRELTTDNKMLDLQVFKYPVFTFTLLINAIVTMALFGGMLLLPVYLQNIRGFTP 385 +F+ + +D + K F +L I+ + G + ++P ++++ + Sbjct: 232 SFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLST 291 Query: 386 IESG-LLLLPGSLIMGIMGPIAGKLFDKYGIRPLAIVGLAITTFATYEFTKLSMDTPYSV 444 E G +++ PG++ + I G I G L D+ G + +G+ + + + L T + Sbjct: 292 AEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW-F 350 Query: 445 IMTDYIIRSIGMSFIMMPIMTAGMNALPMKLISHGTATQNTSRQVAGSIGTAILITLMTQ 504 + + G+SF I T ++L + G + N + ++ G AI+ L++ Sbjct: 351 MTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410 Query: 505 Q 505 Sbjct: 411 P 411
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 74.5 bits (183), Expect = 1e-17 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 12/135 (8%) Query: 87 QTVDVTIPQNATVVQSNATT-NAFVGAGSPI-AYAFDMNNLWVTANIEETVIDDVQKGQT 144 Q + P + V Q T V + + + L VTA ++ I + GQ Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQN 385 Query: 145 VDVYVDAYPDTT---LTGKVEQVGLTTANTFSMLPSSNATANYTKVKQVVPVKISLDHSK 201 + V+A+P T L GKV+ + L V + +K Sbjct: 386 AIIKVEAFPYTRYGYLVGKVKNINLDAI-------EDQRLGLVFNVIISIEENCLSTGNK 438 Query: 202 SVNIVPGMNVSVRIH 216 ++ + GM V+ I Sbjct: 439 NIPLSSGMAVTAEIK 453
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.0 bits (145), Expect = 2e-13 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 6/100 (6%) Query: 9 PRVKRTRQLIQDAFVALVGEKGFENVTVQHIAERAPVNRATFYSHYHDKYDLLDKSIEEM 68 + TRQ I D + L ++G + ++ IA+ A V R Y H+ DK DL + E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 69 LEKLTKVIKQKNRNKEDFQLTFDSPHPSFLALFEHIAENA 108 + ++ E P + H+ E+ Sbjct: 67 ESNIGELE------LEYQAKFPGDPLSVLREILIHVLEST 100
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.8 bits (77), Expect = 1e-04 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 87 IEVLFVDEKYRRNGFGLKLMNSAVEWFKAKKIDEIELTVVYGN-EAVSFYEKLGF 140 IE + V + YR+ G G L++ A+EW K + L N A FY K F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.3 bits (213), Expect = 2e-22 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 15/252 (5%) Query: 2 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDITAMEKMKETYKNMEERLQFVQADVT 61 + A IT +G+G+ V L ++G + + +EK+ + K + ADV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIA-AVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 62 KKEDLHKIVEEAISRFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLK 121 + +I G ID L+N AG V + ++EW N T VF+ + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAG--VLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 122 LVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITAN 181 V M + G I+ G A +A+A++K V TK + E AEY I N Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPR--TSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 182 MVCPGDIIGDMK----------EATIQEARQLKERNTPIGRSGTGEDIARTISFLCEDDS 231 +V PG DM+ E I+ + + + P+ + DIA + FL + Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 232 DMITGTIIEVTG 243 IT + V G Sbjct: 244 GHITMHNLCVDG 255
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 73.5 bits (180), Expect = 3e-18 Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 9/174 (5%) Query: 2 KQTKQKVIDAAISLFNTKGYDGTSVRDIAKRADVNVANISYYFAGKQGLLEQLITNFLEG 61 ++T+Q ++D A+ LF+ +G TS+ +IAK A V I ++F K L ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 62 YIHVIETSFEQREYLSAKDVMVQMVRGI-LRYQFDNRELTRFFYRELSL---DTTLIREV 117 + + + ++ + + R L + ++++ Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 118 MTVYFSKERYYIEQVIRQGQMKQEFK-----KVSFTMFMTQLKGMMNMPFLYPQ 166 + IEQ ++ + + + + + G+M PQ Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 148 bits (376), Expect = 2e-49 Identities = 77/134 (57%), Positives = 95/134 (70%), Gaps = 9/134 (6%) Query: 1 MWNEFKKFAFKGNVVDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLGGVDFTSLHF--- 57 + EF++FA +GNVVDLAVGV+IGAAFGKIVSSLV DII P LG+++GG+DF Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 58 ----GYGKSAVMYGNFIQTIFDFLIIAASIFMFVKVFNKLTSKKEEEKEEEIPEPTKEEV 113 + YG FIQ +FDFLI+A +IFM +K+ NKL KKEE P PTKEEV Sbjct: 63 DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKEEPAAA--PAPTKEEV 120 Query: 114 LLSEIRDLLKQQNS 127 LL+EIRDLLK+QN+ Sbjct: 121 LLTEIRDLLKEQNN 134
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 29.3 bits (65), Expect = 0.009 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 104 VTDEIENNADKVAQVVQWSSAAIEVY---NHYRATRQEKKVEKEERKLERLEKKAEKK-E 159 + D + +N + V + + ++ A + N+ + +K +EK RK E LEK+ EKK E Sbjct: 574 IKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLE 633 Query: 160 KRSRLRMRGES 170 +S + + E+ Sbjct: 634 SKSGNKNKMEA 644
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 67.4 bits (164), Expect = 3e-13 Identities = 60/305 (19%), Positives = 100/305 (32%), Gaps = 44/305 (14%) Query: 401 EVEVIAETEESEEVEVIAEAEESEEVEVIAEAEESEEVEVIAETEESEEVEVIAEAEESE 460 EVE +T ++ + + + +V + +EE+ + E A A SE Sbjct: 984 EVEKRNQTVDTTNIT----TPNNIQADVPSVPSNNEEIARVDEAPVPP----PAPATPSE 1035 Query: 461 EVEVIAETEESEEVEVIAETEESEEVEVIAETKAPEEAEPVVLEETQQEMVLNEAIEQKN 520 E +AE + E V +++ E A +EA+ V TQ NE + + Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVA-KEAKSNVKANTQT----NEVAQSGS 1090 Query: 521 EFIHVAEADEQTKKDVQSFADVLIAEEAAIEEEQSVAEETP-VAEEPPVVQKEEPKREKK 579 E E K E A +E+E+ ET E P V + PK+E+ Sbjct: 1091 E---TKETQTTETK-----------ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS 1136 Query: 580 RHVPFNVVMLKQDRARLVERHAARTNAMQPSMKERVENKPVHQVEEQPMQQVAVEPQVEE 639 V + AR N ++KE EQP ++ + + Sbjct: 1137 ETV-------------QPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183 Query: 640 QPMQQVAVEPQVEEQPMQQV--VVEPQVEEQPMQQVAVEPQVEEQPMQQVAVEPQVEEQP 697 V V E P +P V + + + + + VEP Sbjct: 1184 TESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH-NVEPATTSSN 1242 Query: 698 MQQVV 702 + V Sbjct: 1243 DRSTV 1247 Score = 65.5 bits (159), Expect = 1e-12 Identities = 50/270 (18%), Positives = 83/270 (30%), Gaps = 18/270 (6%) Query: 485 EVEVIAETKAPEEAEPVVLEETQQEMVLNEAIEQKNEFI-HVAEADEQTKKDVQSFADVL 543 EVE +T Q ++ ++ NE I V EA Sbjct: 984 EVEKRNQTVDTTNITT--PNNIQADV---PSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 544 IAEEAAIEEEQSVAEETPVAEEPPVVQKEEPKREKKRHVPFNVVMLKQDRARLVERHAAR 603 E + +E ++V + A E +E K E K +V N + ++ + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAK-EAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 604 TNAMQPSMKERVENKPVH--QVEEQPMQQVAVEPQVEEQPMQQVAVEPQVEEQPM----- 656 T + + E+ E V + +E P V P+ E+ Q EP E P Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 657 -QQVVVEPQVEEQPMQQVAVEPQVEEQPMQQVAVEPQVEEQPMQQV--VVEPQVEEKLVQ 713 Q EQP ++ + + V V E P +P V + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 714 QVVEPQAEE-KPMQQVVEPQAEEKPMQQVV 742 + + + VEP + V Sbjct: 1218 KPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Score = 60.8 bits (147), Expect = 4e-11 Identities = 48/278 (17%), Positives = 91/278 (32%), Gaps = 25/278 (8%) Query: 266 LHETIAERMEDAKQEKDVVVENVLQTESLASKVEHE-----DTILSEEMKRNTEIEQPTI 320 L+ E+ ++ N +Q + + +E D T E Sbjct: 980 LYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 321 EVEKQAPEESVIVKAEEKLEETIIVEIPEEFEEVDVITETEESEEVEVIAEAEESEEVEV 380 E E + K E+ ET E + + V A + +E + Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQN-----------REVAKEAKSNVKANTQTNEVAQS 1088 Query: 381 IAETEESEEMEVIAETEESEEVEVIAETEESEEV-----EVIAEAEESEEVEVIAEAEES 435 +ET+E++ E +E + ETE+++EV +V + E+SE V+ AE Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 436 EEVEVIAETEESEEVEVIAEAEESEEVEVIAETEESEEVEVIAETEESEEVEVIAETKAP 495 + V + +S+ + ++E E +E V E P Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES----TTVNTGNSVVENPENTTP 1204 Query: 496 EEAEPVVLEETQQEMVLNEAIEQKNEFIHVAEADEQTK 533 +P V E+ + ++ +V A + Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Score = 58.9 bits (142), Expect = 1e-10 Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 25/237 (10%) Query: 359 ETEESEEVEVIAEAEESEE--------VEVIAETEESEEMEVIAETEESEEVEVIAETEE 410 T + + +V + +EE V A SE E +AE + E V ++ Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD 1057 Query: 411 SEEVEVIA-EAEESEEVEVIAEAEESEEVEVIAETEESEEVEVIAEAEESEEVEVIAETE 469 + E E + + V A + +E + +ET+E++ E A +E + ETE Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 470 ESEEV-----EVIAETEESEEVEVIAETKAPEEAEPVVLEETQQEMVLNEAIEQKNEFIH 524 +++EV +V + E+SE V+ AE +P V + E Q N Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQPQAEPAREN--DPTVN--------IKEPQSQTNTTAD 1167 Query: 525 VAEADEQTKKDVQSFADVLIAEEAAIEEEQSVAEETPVAEEPPVVQKEEPKREKKRH 581 + ++T +V+ ++ TP +P V E + K RH Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS-ESSNKPKNRH 1223 Score = 58.9 bits (142), Expect = 1e-10 Identities = 50/277 (18%), Positives = 86/277 (31%), Gaps = 38/277 (13%) Query: 559 ETPVAEEPPVVQKEEPKREKKRHVPFNVVMLKQDRARLVERHAARTNAMQPSMKERVENK 618 +T P +Q + P E A A P ++ Sbjct: 993 DTTNITTPNNIQADVPSVPSNN-----------------EEIARVDEAPVPPPAPATPSE 1035 Query: 619 PVHQVEEQPMQQVAVEPQVEEQPMQQVAVEPQVEEQPMQQVVVEPQ----------VEEQ 668 V E Q+ + E+ + A +V ++ V Q +E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 669 PMQQVAVEPQVEEQPMQQVAVEPQVEEQPMQQVVVEPQVEEKLVQQVVEPQAEEKPMQQV 728 + VE++ +V E E + V Q + + VQ EP E P + Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 729 VEPQAEEKPMQQVVVEPQVEERPVQQVVVESQQVQK-------PISSTEVEEKAYVV--- 778 EPQ++ + V+Q V ES V P ++T + V Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSES 1215 Query: 779 -NQRENDVRNVLQTPPTYTIPSLTLLSIPQQAALDNT 814 N+ +N R +++ P P+ T + AL + Sbjct: 1216 SNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Score = 42.4 bits (99), Expect = 2e-05 Identities = 55/351 (15%), Positives = 109/351 (31%), Gaps = 39/351 (11%) Query: 50 NAGKCRFPLVPDNG-FDEEDVIETGRFEEQPVQAVTYE-NQPIQRGIKVERSRRQHVEKV 107 + G ++ L NG +D + R Q V IQ + S + + +V Sbjct: 963 DLGAWKYKLRNVNGRYDLYNPEVEKR--NQTVDTTNITTPNNIQADVPSVPSNNEEIARV 1020 Query: 108 VSTYEEPEIQYEPEREPVVKKASTPAQESNRRPFRPTEMISPIYGYNRPSVEKKEEKQEE 167 P P E A QES +VEK E+ E Sbjct: 1021 DEAPVPPPAPATPS-ETTETVAENSKQESK-------------------TVEKNEQDATE 1060 Query: 168 VKEREDLEISVEGKSVVDAWLEKKGYTLSHFSEGQAPTSSSHERVDEQDQQSKKEEKSVV 227 ++ E++ E KS V A + + S E KE +V Sbjct: 1061 -TTAQNREVAKEAKSNVKANTQ------------TNEVAQSGSETKETQTTETKETATVE 1107 Query: 228 DQWLEKNGYEIERQEPIVEEKEVAQEMSAPQEVPAAELLHETI-AERMEDAKQEKDVVVE 286 + K E ++ P V + ++ + P AE E +++ + + + + Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167 Query: 287 NVLQTESLASKVEHEDTILSEEMKRNTEIEQPTIEVEKQAPEESVIVKAEEKLEETIIVE 346 + +S VE T + N+ +E P + +V ++ K + Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVVENP-ENTTPATTQPTVNSESSNKPKNRHRRS 1226 Query: 347 IPEEFEEVDVITETEESEEVEVIAEAEESEEVEVIAETEESEEMEVIAETE 397 + V+ T + + + + V+++ + + + Sbjct: 1227 VRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGK 1277
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 126 bits (319), Expect = 4e-34 Identities = 93/408 (22%), Positives = 171/408 (41%), Gaps = 17/408 (4%) Query: 4 KVMMSLMLMTFLSAVEGTIVSTAIPRITSDLSGVE-LVSWVYAIYMLATAVSTPIYGKLA 62 ++++ L +++F S + +++ ++P I +D + +WV +ML ++ T +YGKL+ Sbjct: 14 QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 63 DLFGRKKVLLIGATIFLIGSALCGVVTSM-EQLIFFRALQGIGAGAVMPITMTIIGDLYS 121 D G K++LL G I GS + V S LI R +QG GA A + M ++ Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 122 EAKDRAKAQGWMSAVWGVSGVIGPLVGGFLVDSLSWRYIFFLNVPFGIIACLMIAIYYKE 181 + R KA G + ++ + +GP +GG + + W Y+ +P I + + + Sbjct: 134 KEN-RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLK 190 Query: 182 SIKPAKHHIDYLGATVFSLSTIALLYALLTGSSKQNWGDITIIGLLIFAVVSFLIFLFIE 241 K H D G + S+ + + + S I LI +V+SFLIF+ Sbjct: 191 KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYS----------ISFLIVSVLSFLIFVKHI 240 Query: 242 KKSPEPLIPLALFSNRTLSTINILTLIAGAMIISITMYLPIWSQGVLGKNATEAGLILM- 300 +K +P + L N + I + +P + V + E G +++ Sbjct: 241 RKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIF 300 Query: 301 PIPVMWTFGAIFSGNLVGKLKTKQIILLGASILSVATFLLFTLSTNSPSFLIYVAVGLFG 360 P + G LV + ++ +G + LSV+ L + F+ + V + G Sbjct: 301 PGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG 360 Query: 361 LGMGLVTPIYMVTIQAAVPAHTRGTAVGLNTFINTFSQTLGAAIFGTI 408 T I + + G + L F + S+ G AI G + Sbjct: 361 GLSFTKTVISTIVSSSLKQQEA-GAGMSLLNFTSFLSEGTGIAIVGGL 407
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (300), Expect = 9e-35 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 12/257 (4%) Query: 5 LAGKVVVITGSATGLGRAIGVRFAAEKAKVV-INYRSRESEANDVLEEIKKVGGEAIAVK 63 + GK+ ITG+A G+G A+ A++ A + ++Y + E V+ +K A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEK--VVSSLKAEARHAEAFP 63 Query: 64 GDVTVESDVVNLIQSAVKEFGTLDVMINNAGIENAVPSHEMPLEDWNRVINTNLTGAFLG 123 DV + + + +E G +D+++N AG+ H + E+W + N TG F Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 124 SREAIKYFVEHDIKGSVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLAMEYAPKGIRV 183 SR KY ++ GS++ + S +P YA+SK + T+ L +E A IR Sbjct: 124 SRSVSKYMMDRR-SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 184 NNIGPGAINTPINAEKFADPKKRADV--------ESMIPMGYIGKPEEIAAVATWLASSE 235 N + PG+ T + +AD V ++ IP+ + KP +IA +L S + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 236 ASYVTGITLFADGGMTL 252 A ++T L DGG TL Sbjct: 243 AGHITMHNLCVDGGATL 259
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.025 Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 2/103 (1%) Query: 169 MQGLQGPSGNTGATGATGQGITGPTGVTGPTGITGPSG--GPPGPTGPTGATGPGGGPSG 226 M G G NTGA +G GPTG+ G + SG P G +G G Sbjct: 1 MSGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 227 STGATGATGNTGATGSTGVTGSTGVTGATGSTGPTGSTGAQGL 269 G G GN+G TG S + GA GL Sbjct: 61 GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGL 103
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 42.7 bits (100), Expect = 4e-06 Identities = 18/220 (8%), Positives = 65/220 (29%), Gaps = 12/220 (5%) Query: 21 DNSEQHANKQEDDNKKLTRSMKHNKDNNGEQKKEGHKESSQGQQQHTKQNES--NQDQQQ 78 + H ++ ++ ++ N + E+ + +E + K E N Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASK-IQELEARKADLEKALEGAMNFSTAD 139 Query: 79 RSKQYHSDQEKQQHSEQDDRDQNKQQHAKQNDSNQQDKQQNSKQNDPAQDKQQSSKQDDS 138 +K + EK + + + ++K +K + Sbjct: 140 SAKIKTLEAEKAALAA-----RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAE 194 Query: 139 NQGKQQDSKQGDSDQDKQQNSKQDYSDQGKQQNSKQHNSDQGKQQNSKQHNSDQDKQQNS 198 + + + + + + + + + ++ + +D K + Sbjct: 195 LEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD---LEKALEGAMNFSTADSAKIKTL 251 Query: 199 KQHNSDQSKQQNSKQDNSDQGKQQNSKQDNSDQGKQQNSK 238 + + + + ++ + + +G S D++ + K Sbjct: 252 EAEKAAL-EARQAELEKALEGAMNFSTADSAKIKTLEAEK 290
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.4 bits (131), Expect = 3e-10 Identities = 54/321 (16%), Positives = 118/321 (36%), Gaps = 10/321 (3%) Query: 42 GMVLMINSLTGVIGNLLGGVLFDKWGGYKSTLVGIVITLVSILGLVFFHG-WPLYVVWLA 100 G++L + +L + G L D++G LV + V + W LY+ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG--R 103 Query: 101 LIGFGSGMVFPSMYAMVGTVWPEGGR-RAFNAMYVGQNVGIAIGTACGGLVASYRFDYIF 159 ++ +G A + + R R F M G+ G GGL+ + F Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF 163 Query: 160 LANFILYFVFFLIAFIGFR-GMEDKKEPGVQKEVETKKGWSLTPGFKALLIVCVAYALCW 218 A L + FL + ++ P ++ + + G + + + + Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 219 VTYVQWQGAIATHMQE-LNISLRHYSLLWTINGAMIVCAQPLVSMLIRWMKR-SLKQQII 276 + ++ + + G + AQ +++ R ++ ++ Sbjct: 224 LVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG--PVAARLGERRALM 281 Query: 277 IGIIIFAASFIVLSQAQQFTMFLVAMVTLTIGELFVWPAVPTIANILAPKDKLGFYQGVV 336 +G+I +I+L+ A + M MV L G + + PA+ + + +++ G QG + Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQLQGSL 340 Query: 337 NSAATVGKMFGPVVGGAIVDL 357 + ++ + GP++ AI Sbjct: 341 AALTSLTSIVGPLLFTAIYAA 361
>SECA#SecA protein signature. Length = 901 Score = 32.9 bits (75), Expect = 5e-04 Identities = 13/37 (35%), Positives = 24/37 (64%) Query: 122 KNMKKFFNPGPDSIIEAGDMLVLSGERHEVKRIINEL 158 + +K + D+++EAG + ++ ERHE +RI N+L Sbjct: 535 EKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQL 571
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.021 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 82 SYNRNAECIIDIG-KKDYWGQGYGKEAFTLLLNYAFLELNLHRLSLRVFSFNDRAIKLYK 140 ++N A I DI KDY +G G + +A E + L L N A Y Sbjct: 85 NWNGYA-LIEDIAVAKDYRKKGVGTALLHKAIEWA-KENHFCGLMLETQDINISACHFYA 142 Query: 141 SLGF 144 F Sbjct: 143 KHHF 146
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 27.7 bits (61), Expect = 0.032 Identities = 14/36 (38%), Positives = 18/36 (50%) Query: 128 EAPDPLASPDLPASLDPPGILDLPETPDLPETPDPP 163 + P+ +PD P + D P D P PD P PD P Sbjct: 287 DQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNP 322
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 1e-04 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 13/94 (13%) Query: 313 NLIKNAIEAMSVGGTITIKVTVED-AIIVQVKDEGCGIPKDKIPKLNEAFYTTKETGTGL 371 N IK+ I + GG I +K T ++ + ++V++ G K+ T + TGTGL Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN----------TKESTGTGL 315 Query: 372 GLVVTE-KIIKDHNGKISFESEVGVGTTVKVVLP 404 V +++ +I + G V++P Sbjct: 316 QNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.8 bits (67), Expect = 0.042 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Query: 191 MVMDYFSWSYIFVIILSIVACIVAGIYMRRYIQNVKTHLGIR--ALLVVGSIFVLYAYGN 248 M+ Y WSY+ +I + + + + + + +K H I+ L+ VG +F + Sbjct: 161 MIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML---- 216 Query: 249 FANTFMNKVFQKSGVDFVLWDQNENYASNGFV 280 F ++ S + F+++ ++ ++ FV Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFV 248
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 4e-21 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 4/141 (2%) Query: 1 MSK-NILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPEL 59 M+ IL+ +D+ +R +L Y V + + DLV+ D+++P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 DGWSVCRRIRKT-SEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118 + + + RI+K ++P+++++A+ + E GA DY+ KP+ L+ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 119 SRKVTKQLLENEDDTLSIHGI 139 K ++ + EDD+ + Sbjct: 121 EPK--RRPSKLEDDSQDGMPL 139
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.0 bits (80), Expect = 7e-05 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 1/100 (1%) Query: 28 TVTKEEVVQQQQDKAKKEEEKKQAAQAQEKSDMAKKEEAIKAAPKSEEEKKRIAQEQLKN 87 T TKE ++++KAK E EK Q K+E++ P++E ++ +K Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIK- 1156 Query: 88 DIAKKEAAQVQQTNAATKKEVAKPAVQGEKLPNTASNHVA 127 + + A + E N V Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196 Score = 30.0 bits (67), Expect = 0.004 Identities = 18/93 (19%), Positives = 39/93 (41%) Query: 24 ADTGTVTKEEVVQQQQDKAKKEEEKKQAAQAQEKSDMAKKEEAIKAAPKSEEEKKRIAQE 83 A T EV ++ + K + + AQ+ ++ + E + A +EEK ++ E Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 84 QLKNDIAKKEAAQVQQTNAATKKEVAKPAVQGE 116 + + +Q + T + A+PA + + Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Score = 27.7 bits (61), Expect = 0.025 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 3/95 (3%) Query: 33 EVVQQQQDKAKKEEEKKQAAQAQEKSDMAK--KEEAIKAAPKSEEEKKRIAQEQLKNDIA 90 EV Q + + + + + EK + AK E+ + + + + Q + A Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 91 KKEAAQVQQTNAATKK-EVAKPAVQGEKLPNTASN 124 + N + + A + T+SN Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 77.8 bits (191), Expect = 8e-17 Identities = 41/303 (13%), Positives = 102/303 (33%), Gaps = 4/303 (1%) Query: 29 ENKTRNSIEAVSHMQSNEKSELQKQLEAAKEREMKLEKREEILKQQEELFIKIDDLKQKK 88 TR+ + + +Q + + + + +EL ++ + K+K Sbjct: 42 AVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKL 101 Query: 89 EELLEQAGEHNVQIEEVYQELNELKKQQEELE-EKNPLQVKSNDQEKKTNELKSQEELKE 147 + + E +I+E+ +L+K E K E + L +++ E Sbjct: 102 RKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161 Query: 148 KDGVEVKENNGQEEKVHEEFEEQKKKEELKKQQDELRKQQEELKKQQLELEQRIKQELER 207 K + + + E +K E ++ EL K E +IK Sbjct: 162 KALEGAMNFSTADSAKIKTLEAEKAALEARQA--ELEKALEGAMNFSTADSAKIKTLEAE 219 Query: 208 KQQEEQAKQELELKQKEEQAKRELELKQKEEQVKQELELKQKEEQVKQELE-LKQKEEQV 266 K K +LE + + + + ++ L+ ++ ++++ LE Sbjct: 220 KAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTAD 279 Query: 267 KQELELKQKEEQEKQELELKQKEEQEKQELELKQKEEQKKQELELKQKEEQEKGERELKQ 326 +++ + E+ + + + + + + E K++ E E + E + Sbjct: 280 SAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQN 339 Query: 327 AVS 329 +S Sbjct: 340 KIS 342 Score = 63.9 bits (155), Expect = 1e-12 Identities = 44/303 (14%), Positives = 103/303 (33%), Gaps = 14/303 (4%) Query: 25 LAEIENKTRNSIEAVSHMQSNEKSELQKQLEAAKEREMKLEKREEILKQQEELFIKIDDL 84 L+ + K R + +++S S + ++ + K E + + + L + L Sbjct: 94 LSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 153 Query: 85 KQKKEELLEQAGEHNVQIEEVYQELNELKKQQEELEEKNPLQVKSNDQEKKTNELKSQEE 144 +K +L + ++ L+ ++ LE + E N + Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQ--AELEKALEGAMNFSTADSA 211 Query: 145 LKEKDGVEVKENNGQEEKVHEEFEEQKKKEELKKQQDELRKQQEELKKQQLELEQRIKQE 204 + E ++ + +K E + + L+ ++ LE R + Sbjct: 212 KIKTLEAEKAALAARKADL------EKALEGAMNFSTADSAKIKTLEAEKAALEARQAE- 264 Query: 205 LERKQQEEQAKQELELKQKEEQAKRELELKQKEEQVKQELELKQKEEQVKQELELKQKEE 264 LE+ + + + + + L+ ++ ++ + ++ Q +L E Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ-SLRRDLDASRE 323 Query: 265 QVKQELELKQKEEQEKQELELKQKEEQEKQELELKQKEEQKKQELELKQKEEQEKGEREL 324 KQ QK E++ + E ++ + L E KKQ QK E++ E Sbjct: 324 AKKQLEAEHQKLEEQNKISEASRQSLRRD----LDASREAKKQLEAEHQKLEEQNKISEA 379 Query: 325 KQA 327 + Sbjct: 380 SRQ 382 Score = 48.5 bits (115), Expect = 1e-07 Identities = 55/249 (22%), Positives = 107/249 (42%), Gaps = 18/249 (7%) Query: 33 RNSIEAVSHMQSNEKSELQKQLEAAK-EREMKLEKREEILKQQEELFIKIDDLKQKKEEL 91 ++EA + K++L+K LE A K + + ++ L + +L++ E Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGA 272 Query: 92 LEQAGEHNVQIEEVYQELNELKKQQEELEEKN-----PLQVKSNDQEKKTNELKSQEE-- 144 + + + +I+ + E L+ ++ +LE ++ Q D + K E Sbjct: 273 MNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEH 332 Query: 145 --LKEKDGVEVKENNGQEEKVHEEFEEQKKKEELKKQQDELRKQQEELKKQ----QLELE 198 L+E++ + + E KK+ E + Q+ E + + E +Q L+ Sbjct: 333 QKLEEQNKISEASRQSLRRD-LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDAS 391 Query: 199 QRIKQELERKQQEEQAK-QELELKQKEEQAKRELELKQKEE-QVKQELELKQ-KEEQVKQ 255 + K+++E+ +E +K LE KE + ++L K+K E Q K E E K KE+ KQ Sbjct: 392 REAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQ 451 Query: 256 ELELKQKEE 264 EL + Sbjct: 452 AEELAKLRA 460
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.009 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 19/143 (13%) Query: 3 IEIKDTLISEEQLQEKVKELALQIERDFEGEEIVVIAVLKGSFVFAADLIRHIKNDV-TI 61 I IKD I+ EQ +E E+ I D +I+ K +LI+ + +D + Sbjct: 154 INIKDYAINSEQSKEVYYEIGKGISLD-------IISKDKSLDPEFLNLIKSLSDDSDSS 206 Query: 62 DFISASSYGNQTETTGKVKLLKDIDVNITGKNVIVVEDIIDSGLTLHFLKDH---FFMHK 118 D + + + + E K ID+N +N+ + + +F DH ++ Sbjct: 207 DLLFSQKFKEKLELNNK-----SIDINFIKENLTEFQHAFSLAFSYYFAPDHRTVLELYA 261 Query: 119 PKALKFCTLLDKPERRKVDLKAE 141 P ++ ++K E+ + +E Sbjct: 262 PDMFEY---MNKLEKGGFEKISE 281
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 7e-04 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 28/148 (18%) Query: 177 QIK-HF--------STIAYTKSQRLESLIDELFEITRMNYGMLKLDKKPIDISELLIQLD 227 QI HF + + ++ L E+ R + L+ + L Sbjct: 169 QINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRYS---LRYSNAR------QVSLA 219 Query: 228 EEL-----YPLLEKHHLEARLNVDSHLPIN-GDGKLLARVFENLLTNAVRYG----YDGQ 277 +EL Y L E RL ++ + D ++ + + L+ N +++G G Sbjct: 220 DELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGG 279 Query: 278 FVDLNGYIDNGEVVVQVINYGDSIPEED 305 + L G DNG V ++V N G + Sbjct: 280 KILLKGTKDNGTVTLEVENTGSLALKNT 307
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 102 bits (255), Expect = 3e-27 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 5/144 (3%) Query: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 M +IL+ADD+A I ++ L + GY V ++ I DLVV D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGYEVTRQIRA-KHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 + +++ +I+ + +P++ +SA+ + + GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII----G 116 Query: 120 RFLTLNQPKVAENKSALEVGGVVI 143 R L + + ++ + + G ++ Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLV 140
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 41.4 bits (97), Expect = 6e-07 Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 7 LTLQKIVETAAEIADTNGIQEVTLASLAQTLGVRSPSLYNHVK 49 L + +++ A E+ + GI +T LAQ LG+ P+LY HVK Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVK 46
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.3 bits (211), Expect = 2e-21 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 2/145 (1%) Query: 2 THILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGY 61 ILV +D+ I+ ++ + L + V + DLV+ DV++PD + + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 S-ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAA 120 + +I + + D+P+++++ + + IK E G DY+ KPF T I + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 TKEAEAATILQ-FHELMLNSTAYAA 144 + ++ Q L+ S A Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQE 148
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 3e-12 Identities = 24/141 (17%), Positives = 56/141 (39%), Gaps = 1/141 (0%) Query: 4 VLVIKNERSLSKKIVSGLTEEGHFILKLHNENEGLNIVYEQDWDIIILDWDSLSISGPEI 63 +LV ++ ++ + L+ G+ + N + D D+++ D + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 CRQIR-LVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDYT 122 +I+ P+++++ + + + GA DY+ KPF EL+ + L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 123 QQNEPNFVQFKDLLVDVSSNI 143 + Q LV S+ + Sbjct: 126 PSKLEDDSQDGMPLVGRSAAM 146
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 38.8 bits (90), Expect = 2e-07 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%) Query: 1 MHTLLSVLLIIVSILMIVMVLMQSSNSSGLSGAISGGAE-QLFGKQKARGIEAVLNRITI 59 M+ L V+ +IV+I ++ ++++Q + + + GA LFG + G + R+T Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG---SSGSGNFMTRMTA 57 Query: 60 VLAVLFFALTIGVTYLN 76 +LA LFF +++ + +N Sbjct: 58 LLATLFFIISLVLGNIN 74
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 29.2 bits (65), Expect = 0.026 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 262 VIMTESYAQGASIGEFRSLEESKPFIDRPIHQIAIDFDYNRFFKHFMSLM 311 + + + SI ++ + I I IDFD +K F SL Sbjct: 120 IWVLNGFKHQQSIKQYID-AHREELERNQIKIIGIDFDIETEYKWFYSLQ 168
>SECA#SecA protein signature. Length = 901 Score = 1170 bits (3029), Expect = 0.0 Identities = 448/897 (49%), Positives = 599/897 (66%), Gaps = 65/897 (7%) Query: 1 MIGILKKVF-DVNQRQIKRMQKTVEQIDALEPSIKPLTDEQLKGKTLEFKERLTKGETVD 59 +I +L KVF N R ++RM+K V I+A+EP ++ L+DE+LKGKT EF+ RL KGE ++ Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 DLLPEAFAVVREAATRVLGMRPYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNAL 119 +L+PEAFAVVREA+ RV GMR + VQL+GG+ L+E I+EM+TGEGKTLT+TLP YLNAL Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 TGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEKQEAYAADITYSTNNE 179 TGKGVHVVTVN+YLAQRDA L EFLGLTVGINL M K+EAYAADITY TNNE Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 LGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANA 239 GFDYLRDNM E+ VQR LH+A++DEVDSIL+DEARTPLIISG A+ S+E+Y N Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNK 241 Query: 240 FVRTL-----------ENEKDYSFDVKTKNVMLTEDGITKAEKAFHI-------ENLFDL 281 + L + E +S D K++ V LTE G+ E+ E+L+ Sbjct: 242 IIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 301 Query: 282 KHVALLHHINQALRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKE 341 ++ L+HH+ ALRAH + RD DY+V++GE++IVD+ TGR M+GRR+S+GLHQA+EAKE Sbjct: 302 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKE 361 Query: 342 GVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRD 401 GV+IQNE+ TLA+ITFQNYFR+YEKL+GMTGTA TE EF +IY ++ +V+PTN+P+IR Sbjct: 362 GVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRK 421 Query: 402 DRADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNA 461 D DL++ + K A++EDI R +GQPVLVGT++IE SEL+S LT+ G++HN+LNA Sbjct: 422 DLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA 481 Query: 462 KNHAREADIIAEAGIKGAVTIATNMAGRGTDIKLG------------------------- 496 K HA EA I+A+AG AVTIATNMAGRGTDI LG Sbjct: 482 KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 541 Query: 497 ----DDVKNVG-LAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRFGSD 551 D V G L +IGTERHESRRIDNQLRGR+GRQGD G ++FYLSMED LMR F SD Sbjct: 542 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASD 601 Query: 552 NMKAMMDRLGMDDSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYK 611 + MM +LGM + IE V++A+ +AQ++VE N+D RKQLL+YDDV QR IY Sbjct: 602 RVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYS 661 Query: 612 QRQEVMESENLRGIIEGMMKSTVERAV-ALHTQEEIEEDWNIKGLVDYLNTNLLQEGDVK 670 QR E+++ ++ I + + + + A + +EE W+I GL + L + + + Sbjct: 662 QRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIA 721 Query: 671 E--EELRRLAPEEMSEPIIAKLIERYNDKEKLMPEEQMREFEKVVVFRVVDTKWTEHIDA 728 E ++ L E + E I+A+ IE Y KE+++ E MR FEK V+ + +D+ W EH+ A Sbjct: 722 EWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAA 781 Query: 729 MDHLREGIHLRAYGQIDPLREYQMEGFAMFESMIASIEEEISRYIMKAEI---------- 778 MD+LR+GIHLR Y Q DP +EY+ E F+MF +M+ S++ E+ + K ++ Sbjct: 782 MDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELE 841 Query: 779 -EQNLERQEVVQGEAVHPSSDGEEAKKKPVVKGEQ--VGRNDLCKCGSGKKYKNCCG 832 ++ +E + + Q + + D A + + VGRND C CGSGKKYK C G Sbjct: 842 QQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHG 898
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 30.3 bits (68), Expect = 0.001 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%) Query: 72 LHTPSLMFFSNNLDQLYKDLSEKNVTVGQVVDLPTGRAFNFADNENNYFAVMERK 126 L P ++ S + +++VGQ V TGR + N NN F +ER+ Sbjct: 270 LSVPRILTLSG---------QKGSISVGQNVPFITGRVTGESANVNNPFQTVERQ 315
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 36.2 bits (83), Expect = 7e-04 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 46/178 (25%) Query: 307 YTVNVKNHGGDVAGEAMFTDMIPDGTEYVPGSIKLKADGTEKAITDAEDNDAGFYKDKKV 366 Y +N+ N G A + + +PDG + G + + Sbjct: 229 YKINIVNQGTATARNVVVENPVPDGYAHSSGQ-------------------------RVL 263 Query: 367 TVKLGDVQNTEEDPNGITVQFKVRALPSYIGKQVTNKARIDYGNLLKGSKEYTNSNEVVN 426 T LGD+Q + ITV+F P G+ TN A + Y G K + V+N Sbjct: 264 TFTLGDMQ--PGEHRTITVEF----CPLKRGR-ATNIATVSY---CGGHKNTASVTTVIN 313 Query: 427 EVIARNPEIESVKEVKNVQGKSRYEVGDTIEYTVKMRNKIENSIAKKIVIEDSLPNGI 484 E P ++ ++ G V +EY + + N + + + +V+ED+L G+ Sbjct: 314 E-----PCVQV-----SIAGADWSYVCKPVEYVISVSNP-GDLVLRDVVVEDTLSPGV 360
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 33.0 bits (75), Expect = 0.003 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 13/105 (12%) Query: 548 LFVLSSIVISFTFMTF--ILMLVTVFG------LVGKFLAVTLLVLQLATSGGTFPGELN 599 L+ L VI+ T + F + M+VT + + L +T ++ SG FP + Sbjct: 148 LYALP--VIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILF---LSGAVFPVDQL 202 Query: 600 IAVLSKIGQFLPMSHSLRGLQDVISLGDWSQLQMQILILLCYLVV 644 V +FLP+SHS+ ++ ++ + + L Y+V+ Sbjct: 203 PIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVI 247
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 8e-06 Identities = 31/199 (15%), Positives = 64/199 (32%), Gaps = 28/199 (14%) Query: 81 PAKGKVKDIEVKEGQEVEKGTKLFSYDNEEINLQMKQAE---LDQKMADMRYDQGKKKLD 137 VK+I VKEG+ V KG L + + L ++ RY + ++ Sbjct: 102 IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE 161 Query: 138 SLKKEIKKAKDSGAGKEVTDPM-----------------EEQVSELEMAQKTTDLEKEKG 180 K K D + V++ ++ EL + +K + Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA 221 Query: 181 KLQKEELSKK--QKELTIYSNFA--GVVQKLDKDAAQSSSQALGGQGKAFLQVASKDPFQ 236 ++ + E + + L +S+ + K ++ + L+V Q Sbjct: 222 RINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNE----LRVYKSQLEQ 277 Query: 237 IQGTLTELQKSQIQKDQTF 255 I+ + ++ Q F Sbjct: 278 IESEILSAKEEYQLVTQLF 296
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.7 bits (72), Expect = 0.005 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 11/168 (6%) Query: 55 LVQEYGFSTAQIGLLGSVMAIVYGFSKF----FMGNLSDKAFAQRFIAVGLFLSGLVNIC 110 L+++ S G ++A+ Y +F +G LSD+ + + V L + + Sbjct: 31 LLRDLVHSNDVTAHYGILLAL-YALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 111 FGFASSFGMIVTLLVVNGIVQGMGAPPCSIVMTKWFSKKERGTKTGLWNISHNVGGMLVP 170 A ++ +V GI GA + + ER G + GM+ Sbjct: 90 MATAPFLWVLYIGRIVAGITGATGAVAGA-YIADITDGDERARHFGFMSACFGF-GMVAG 147 Query: 171 PLVGIGVGIFGENHWQGGVFIFPAIIAMVIAVLVWINAKDTPESEGLP 218 P++G G+ G F A + + + ++ + E P Sbjct: 148 PVLG---GLMGGFSPHAP-FFAAAALNGLNFLTGCFLLPESHKGERRP 191
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 104 bits (260), Expect = 4e-28 Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 1/135 (0%) Query: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 ILV DD+++IR ++ L GY+V ++ G D+++ DV++PD + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKK 120 LL ++ D+PVL+++A++ + + GA DY+ KPF+ ELI + K+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 KEVTVSHEVIGAGEI 135 + + + + Sbjct: 125 RPSKLEDDSQDGMPL 139
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 168 bits (427), Expect = 8e-52 Identities = 86/344 (25%), Positives = 150/344 (43%), Gaps = 44/344 (12%) Query: 3 SILICGGAGYIGSHAVKRLVDEGLSVVVVDNLQTGHEDAI---------TEGAKFYNGDL 53 L+ G AG+IG H KRL++ G VV +DNL ++ ++ G +F+ DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 54 RDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKF 113 D+ + D+F + E V V S+E P Y ++N+ G L +LE K+ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 114 IFSSTAATYGEVDVDLITEETMTN-PTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNV 172 +++S+++ YG + + + P + Y TK A E M H YS L R+F V Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 173 AGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVA 232 G P G RP+ L + G+ + YN G RD+ +++D+ Sbjct: 182 YG--PWG------RPDMALFKFTKAMLEGKSIDV------YN--YGKMKRDFTYIDDIAE 225 Query: 233 AHFLGLKDLQNGGESDF----------------YNLGNGNGFSVKEIVDAVREVTNHEIP 276 A + L+D+ ++ + YN+GN + + + + A+ + E Sbjct: 226 A-IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK 284 Query: 277 AEVAPRRAGDPARLVASSQKAKEKLGWDPQYVNVKTIIEHAWNW 320 + P + GD A ++ E +G+ P+ VK +++ NW Sbjct: 285 KNMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 171 bits (436), Expect = 4e-53 Identities = 81/351 (23%), Positives = 149/351 (42%), Gaps = 48/351 (13%) Query: 1 MAILVTGGVGYIGSHTCVELLNNDYEIIVVDNLSNSSIESIN--RVKELTGKQFKFYKED 58 M LVTG G+IG H LL ++++ +DNL++ S+ R++ L F+F+K D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 59 LVNYEALNKIFEENTIEAVIHFAGLKAVGESVAKPLMYYHNNIISTLVLCEVMQKHNVKK 118 L + E + +F E V AV S+ P Y +N+ L + E + + ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 MIFSSSATVYGIPETSPITEE----FPLSATNPYGQTKLMIEQMMRDVAFADAE---WSI 171 ++++SS++VYG+ P + + P+S Y TK E M A + Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELM----AHTYSHLYGLPA 173 Query: 172 ALLRYFNPFGAHESGRIGEDPNGIPNNLMPYVTQVAVGKLKELSVFGNDYPTKDGTGVRD 231 LR+F +G P G P+ + T+ A+ + K + V+ G RD Sbjct: 174 TGLRFFTVYG----------PWGRPDMALFKFTK-AMLEGKSIDVYN------YGKMKRD 216 Query: 232 YIHVVDLANGHVKAL-------AKVMNTTGVDA--------YNLGTGTGYSVLEMVEAFE 276 + ++ D+A ++ + TG A YN+G + +++ ++A E Sbjct: 217 FTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE 276 Query: 277 KVSGKKVPYKITERRPGDVAVCFADASKAKRELGWEAKHGLEEMCADSWRW 327 G + + +PGDV AD +G+ + +++ + W Sbjct: 277 DALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 462 bits (1191), Expect = e-167 Identities = 178/344 (51%), Positives = 229/344 (66%), Gaps = 25/344 (7%) Query: 11 TYLITGAAGFVGYFLSKKLLDQGCKVIGIDNINDYYDVNLKYARLEQLKPYEKFIFIKGD 70 YL+TGAAGF+G+ +SK+LL+ G +V+GIDN+NDYYDV+LK ARLE L F F K D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKID 60 Query: 71 ISDKDMITKLFEEYKPNIVVNLAAQAGVRYSIENPDVYIQSNIIGFYNILEACRHFPVEH 130 ++D++ +T LF V + VRYS+ENP Y SN+ GF NILE CRH ++H Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 131 LVYASSSSVYGANKKVPFEETDFVDNPVSLYASTKKSNELMAHTYSHLYKIPATGLRFFT 190 L+YASSSSVYG N+K+PF D VD+PVSLYA+TKK+NELMAHTYSHLY +PATGLRFFT Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFT 180 Query: 191 VYGPLGRPDMAYFGFTDKYFAGDSIKIFNNGDFENDLYRDFTYIDDIVEGIQRLLSNPPK 250 VYGP GRPDMA F FT G SI ++N G + RDFTYIDDI E I RL P Sbjct: 181 VYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMK----RDFTYIDDIAEAIIRLQDVIPH 236 Query: 251 GDVE--------------HKVFNIGNNNPEKLMVFIETLEKVLGKALGREVAFEKVFEPI 296 D + ++V+NIGN++P +LM +I+ LE ALG E +K P+ Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE----DALGIEA--KKNMLPL 290 Query: 297 KPGDVPATYASTDLLQKAVDFKPETSIEKGLQEFANWYIEYYKV 340 +PGDV T A T L + + F PET+++ G++ F NWY ++YKV Sbjct: 291 QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 478 bits (1233), Expect = e-173 Identities = 179/332 (53%), Positives = 244/332 (73%), Gaps = 5/332 (1%) Query: 1 MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVAIDRNTG----KVLAVGEEARSMVGRTP 56 MF+ D+ IDLGTAN LI+VKG+GIVLNEPSVVAI ++ V AVG +A+ M+GRTP Sbjct: 8 MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTP 67 Query: 57 GNIVAIRPLKDGVIADFEITEAMLKYFINKLDVKSFFS-KPRILICCPTNITSVEQKAIR 115 GNI AIRP+KDGVIADF +TE ML++FI ++ SF PR+L+C P T VE++AIR Sbjct: 68 GNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIR 127 Query: 116 EAAERSGGKTVFLEEEPKVAAVGAGMEIFQPSGNMVVDIGGGTTDIAVLSMGDIVTSSSI 175 E+A+ +G + VFL EEP AA+GAG+ + + +G+MVVDIGGGTT++AV+S+ +V SSS+ Sbjct: 128 ESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSV 187 Query: 176 KMAGDKFDMEILNYIKRKYKLLIGERTSEDIKIKVGTVFPGARSEELEIRGRDMVTGLPR 235 ++ GD+FD I+NY++R Y LIGE T+E IK ++G+ +PG E+E+RGR++ G+PR Sbjct: 188 RIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPR 247 Query: 236 TITVCSEEITEALKENAAVIVQAAKGVLERTPPELSADIIDRGVILTGGGALLHGIDMLL 295 T+ S EI EAL+E IV A LE+ PPEL++DI +RG++LTGGGALL +D LL Sbjct: 248 GFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL 307 Query: 296 AEELKVPVLIAENPMHCVAVGTGIMLENIDRL 327 EE +PV++AE+P+ CVA G G LE ID Sbjct: 308 MEETGIPVVVAEDPLTCVARGGGKALEMIDMH 339
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 57.0 bits (137), Expect = 1e-10 Identities = 34/283 (12%), Positives = 77/283 (27%), Gaps = 15/283 (5%) Query: 49 LSKNDGMT----VEEAKRRAAAAAKVKAAVLAKQKGEGTEEEKAKAKAKAAAAAKAKAAA 104 L +G E KR Q + + A+ A A Sbjct: 971 LRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAP 1030 Query: 105 LAKQKREGMEEGTEEEKAKAAAAAKAKAAALAKQKREGMEEGTEEEKAKAKAKAAAAAKA 164 + ++++K + A Q RE +E KA + A + + Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 165 KAAALAKQKREGTEEVTEEERAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEERAKAKA 224 + + + T V +EE+AK + + K + K+E +E V + + Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEV-PKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 225 KAAAAAKAKAAALAKQKREGMEEGTEEEKAKAKAKAVAAAKAKAAALAKQKASQGDGDSG 284 K + + T + + + + + ++ Sbjct: 1150 DPTVNIKEPQS----------QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENP 1199 Query: 285 DEKAKAIAAAKAKAAAAARAKMEGAEGKKEEEAKQEEPSVNQP 327 + A + ++ + K + E + + Sbjct: 1200 ENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Score = 51.6 bits (123), Expect = 5e-09 Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 10/311 (3%) Query: 19 AKEEARKRLVAKHNAEISKLEE--ENQEKEKALSKNDGMTVEEAKRRAAAAAK--VKAAV 74 +A V +N EI++++E S+ E +K+ + K A Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 75 LAKQKGEGTEEEKAKAKA--KAAAAAKAKAAALAKQKREGMEEGT--EEEKAKAAAAAKA 130 Q E +E K+ KA + A++ + Q E E T +EEKAK Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQ 1120 Query: 131 KAAALAKQKREGMEEGTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEE--RAKA 188 + + Q E+ + A+ ++ E +E Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE 1180 Query: 189 KAKAAAAAKAKAAALAKQKREGTEEVTEEERAKAKAKAAAAAKAKAAALAKQKREGMEEG 248 + + ++ + T T+ + ++ E Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Query: 249 TEEEKAKAKAKAVAAAKAKAAALAKQKASQGDGDSGDEKAKAIAAAKAKAAAAARAKMEG 308 + + A + + A+ KA + G ++ I+ + + Sbjct: 1241 SNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSN 1300 Query: 309 AEGKKEEEAKQ 319 K + Q Sbjct: 1301 TSMNKNYSSSQ 1311 Score = 45.4 bits (107), Expect = 4e-07 Identities = 31/259 (11%), Positives = 72/259 (27%), Gaps = 13/259 (5%) Query: 15 AARRAKEEARKRLVAKHNAEISKLEEENQEKEKALSKNDGMTVEEAKRRAAAAAKVKAAV 74 A +K+E SK E+N++ + + +EAK A + Sbjct: 1040 VAENSKQE-------------SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVA 1086 Query: 75 LAKQKGEGTEEEKAKAKAKAAAAAKAKAAALAKQKREGMEEGTEEEKAKAAAAAKAKAAA 134 + + + T+ + K A KAK Q+ + ++ ++ A Sbjct: 1087 QSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 135 LAKQKREGMEEGTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEERAKAKAKAAA 194 ++E + A + A + + A Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 195 AAKAKAAALAKQKREGTEEVTEEERAKAKAKAAAAAKAKAAALAKQKREGMEEGTEEEKA 254 + + + + + ++ AL + +A Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARA 1266 Query: 255 KAKAKAVAAAKAKAAALAK 273 KA+ A+ KA + +++ Sbjct: 1267 KAQFVALNVGKAVSQHISQ 1285 Score = 40.4 bits (94), Expect = 2e-05 Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 17/234 (7%) Query: 14 EAARRAKEEARKRLVAKHNAEISKLEEENQEKEKALSKNDGMTVEEAKRRAAAAAKVKAA 73 +A + E A+ K E EKE+ + + KV + Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEE--------KAKVETEKTQEVPKVTSQ 1128 Query: 74 VLAKQKGEGTEEEKAKAKAKAAAAAKAKAAALAKQKREGMEEGTEEEKAKAAAAAKAKAA 133 V KQ+ T + +A+ + K E+ +E + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 134 ALAKQKREGMEEGTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEERAKAKAKAA 193 E T + + ++ K K + +R E A Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPK----NRHRRSVRSVPHNVEPA-----TT 1239 Query: 194 AAAKAKAAALAKQKREGTEEVTEEERAKAKAKAAAAAKAKAAALAKQKREGMEE 247 ++ AL T V + RAKA+ A KA + +++ + + Sbjct: 1240 SSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.007 Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 3/99 (3%) Query: 53 DAAERSNAEAKKLVEEQREMLKQSRVEAQELIERAKKQAVDQKDAIVAAAKEEAESIKAS 112 + +++ + +K ++ E Q+R A+E ++ +A Q + + + E E+ Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKE--AKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 113 AVQEIQREKEQAIAALQEQVASLSVQIASKVIEKELKEE 151 + EKE+ E+ + ++ S+V K+ + E Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVP-KVTSQVSPKQEQSE 1137
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.3 bits (78), Expect = 6e-04 Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 1/107 (0%) Query: 169 RKEEHVVKAESPEEEQVKQIDDEEVVNAEEKKGDEVKEKKVVKQEVAKKVTASEKKVVKN 228 R +E V +P E E K ++ ++ ++V K VK Sbjct: 1019 RVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA 1078 Query: 229 ETKVEEQPVSKEETKAVEKVEKPVEQKQEKRNEYVKVEEEEEKLEVK 275 T+ E S ETK + E EK E KVE E+ + K Sbjct: 1079 NTQTNEVAQSGSETKETQTTETKETATVEKE-EKAKVETEKTQEVPK 1124 Score = 33.1 bits (75), Expect = 0.001 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 1/100 (1%) Query: 177 AESPEEEQVKQIDDEEVVNAEEKKGDEVKEKKVVKQEVAKKVTASEKKVVKNETKVEEQP 236 A E + + ++ EK + E +EVAK+ S K +V + Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKE-AKSNVKANTQTNEVAQSG 1089 Query: 237 VSKEETKAVEKVEKPVEQKQEKRNEYVKVEEEEEKLEVKL 276 +ET+ E E +K+EK + +E K+ ++ Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV 1129 Score = 31.6 bits (71), Expect = 0.005 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 10/130 (7%) Query: 164 SGTAVRKEEHVVKAESPEEEQVKQIDDEEVVN---AEEKKGD-----EVKEKKVVKQEVA 215 S T E+ + E+ + + N A+E K + + E E Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 216 KKVTASEKKVVKNETKVEEQPVSKEETKAVEKVEKPVEQKQEKRNEYVKVEEEEEKLEVK 275 + T E K K E+ V E+T+ V KV V KQE+ E V+ + E + Sbjct: 1094 ETQTT-ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS-ETVQPQAEPARENDP 1151 Query: 276 LFIVEAFTSL 285 ++ S Sbjct: 1152 TVNIKEPQSQ 1161
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 112 bits (281), Expect = 2e-32 Identities = 31/117 (26%), Positives = 56/117 (47%) Query: 3 GKILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGI 62 IL+ DD IR +L++ + GY +N + + DLVV D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIRQAVRNELA 119 ++L +K+ + V++M+A +A + GA + KPFD+ E+ + LA Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.8 bits (160), Expect = 2e-15 Identities = 34/194 (17%), Positives = 77/194 (39%), Gaps = 13/194 (6%) Query: 19 RREQMIKGAVQLFKQKGFPRTTTREIAKAAGFSIGTLYEYIRTKDDVLYLVCDSIYEHVK 78 R+ ++ A++LF Q+G T+ EIAKAAG + G +Y + + K D+ + + ++ Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 79 ERLEEV-VCTEKGSVESLKIAITNYFKVMDELQEE---VLIMYQEVRFLPKESLPYVLEK 134 E E + L+ + + + + + I++ + F+ + ++ ++ Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 135 EF--QMVGMFENILEQCTENGTFTLNKKEIQLLAHNIF--IQGQMWGFRRWALQK-LYTL 189 + E L+ C E + + A + I G M W + L Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPAD-LMTRRAAIIMRGYISGLM---ENWLFAPQSFDL 187 Query: 190 EEYTDMQIRYVLQG 203 ++ + +L+ Sbjct: 188 KKEARDYVAILLEM 201
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.8 bits (119), Expect = 3e-09 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 12/137 (8%) Query: 2 KILLIMEDAEERRSLAEKFTENIRNVECFEANTGTESLFMMKKHTPDFVFLNSKLLDGTG 61 IL+ +DA R L + + + + + D V + + D Sbjct: 5 TILVADDDAAIRTVLNQAL--SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 FEYASLLREVNCYTKFIFMGE--DIEESITAFRFQAVYYLLRPFREEDLQFLLYRMAKEQ 119 F+ +++ + M +I A A YL +PF +L ++ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII------- 115 Query: 120 GEKAKSYLRKLPIEGQE 136 +A + ++ P + ++ Sbjct: 116 -GRALAEPKRRPSKLED 131
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 59.8 bits (145), Expect = 6e-12 Identities = 72/380 (18%), Positives = 142/380 (37%), Gaps = 35/380 (9%) Query: 7 ISKRKLLSIAGLGWLFDAMDVGMLSFVMVALQKDWGLSTQEMGWIG---SINSIGMAVGA 63 + + L + DA+ +G++ V+ L +D S G ++ ++ A Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 64 LVFGILSDKIGRKSVFIITLLLFSIGSGLTALTTTLAMFLVLRFLIGMGLGGELPVASTL 123 V G LSD+ GR+ V +++L ++ + A L + + R + G+ G VA Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAY 119 Query: 124 VSESVEAHERGKIVVLLESFWAGGWLIAALISYF---VIPKYGWEVAMILSAVPALYALY 180 +++ + ER + + + + G + ++ P + A L+ + L + Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 181 LRWNLPDSPRFQKVEKRPSVIENIKSVWSGEYRKATIMLWILWFSV---------VFSYY 231 L LP+S + ++ R + + S L ++F + ++ + Sbjct: 180 L---LPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 232 GM--FLWLPSV--MVLKGFSLIKSFQYVLIMTLAQLPGYFTAAWFIERLGRKFVLVTYLI 287 G F W + + L F ++ S +I RLG + L+ +I Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGP-----------VAARLGERRALMLGMI 285 Query: 288 GTACSAYLFGVAESLTVLIVAGMLLSFFNLGAWGALYAYTPEQYPTVIRGTGAGMAAAFG 347 L A + +LL+ +G AL A Q +G G AA Sbjct: 286 ADGTGYILLAFATRGWMAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQLQGSLAALT 344 Query: 348 RIGGILGPLLVGYLVASQAS 367 + I+GPLL + A+ + Sbjct: 345 SLTSIVGPLLFTAIYAASIT 364 Score = 34.0 bits (78), Expect = 0.001 Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 5/125 (4%) Query: 274 ERLGRKFVLVTYLIGTACSAYLFGVAESLTVLIVAGMLLSFFNLGAWGALYAYTPEQYPT 333 +R GR+ VL+ L G A + A L VL + G +++ AY + Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI-GRIVAGITGATGAVAGAYIADITDG 126 Query: 334 VIRGTGAG-MAAAFGRIGGILGPLLVGYLVASQASLSLIFTIFCGSILIGVFAVIILGQE 392 R G M+A FG G + GP+L G + + L E Sbjct: 127 DERARHFGFMSACFG-FGMVAGPVLGGLMGGFSPHAPFFAAAALN--GLNFLTGCFLLPE 183 Query: 393 TKQRE 397 + + E Sbjct: 184 SHKGE 188
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 4e-04 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 7/92 (7%) Query: 289 LSEQNVAQQGQKEKE-----IKEKLKKEQELKAKEENHHKVEKPEEKAKI--EEEVKKEL 341 VAQ G + KE KE E+E KAK E E P+ +++ ++E + + Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139 Query: 342 EKEQKKENQENLIFSGRQVYEERHKQFFKEAP 373 + + + + + + ++ + + E P Sbjct: 1140 QPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171
>INTIMIN#Intimin signature. Length = 939 Score = 29.3 bits (65), Expect = 0.038 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 8/64 (12%) Query: 346 EYIDDLRNVLNEEEFNLLNITVRYVEKNENAVLSYAKDDMFALVLLINQGRSEHEIKKTE 405 +Y+++LR L+ ++L V++N N +L Y K D+ +L + + +E +K + Sbjct: 422 QYVNELR-TLSGSRYDL-------VQRNNNIILEYKKQDILSLNIPHDINGTERSTQKIQ 473 Query: 406 NVIQ 409 +++ Sbjct: 474 LIVK 477
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.9 bits (101), Expect = 2e-07 Identities = 25/86 (29%), Positives = 42/86 (48%) Query: 20 VFPFYILLLRNVGNSFSQFGWAYGLFALTSALVYPLIGRISDRVGDRKLLIIYAWSMAIL 79 V P + L + + + +G L+AL P++G +SDR G R +L++ A+ Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 80 MLCFPIATEVWHVYILQILMGILGAV 105 A +W +YI +I+ GI GA Sbjct: 87 YAIMATAPFLWVLYIGRIVAGITGAT 112
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 73.3 bits (180), Expect = 2e-16 Identities = 73/353 (20%), Positives = 135/353 (38%), Gaps = 21/353 (5%) Query: 23 ILVLGTLTAIGPLSIDMYLPSLPKLTDDLQTGASLAQ---LTLTACLLGLSVGQLFVGSI 79 ++V+ + A+ + I + +P LP L DL + + L L +G++ Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 80 SDIYGRRKPLIIALIIYVASSLLCAVAPSIWTLVLLRFLQGASGSAGIVISRAMVRDMYS 139 SD +GRR L+++L + A AP +W L + R + G +G+ G V A + D+ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADITD 125 Query: 140 GSEMTKFFSLLMLVNGTAPILAPIIGGQLLQFTTWRGVFIVLGAISVFMLISATFVLRET 199 G E + F + G + P++GG + F+ F A++ ++ F+L E+ Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCFLLPES 184 Query: 200 LPPEERETGGLSGTLATYGKLLKDRLFMGYALSQGLVTAAMFAYISGSPFVLQNIYGA-- 257 E R L R A + + + P L I+G Sbjct: 185 HKGERRPLRRE--ALNPLASFRWARGMTVVAAL--MAVFFIMQLVGQVPAALWVIFGEDR 240 Query: 258 ---SPQQFSLFFAINGI-GIIIASQVTGRLAGKVNEKTLFVSGIIIAAVGGLSLLLTILL 313 + A GI + + +TG +A ++ E+ + G+I G +L Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTG---YILLAFA 297 Query: 314 GIGLIGVLCSLFLVVSSVGVVSTTGF---SLAMRNQKQAAGTASALLGLLQFI 363 G + + L +G+ + + Q Q G+ +AL L + Sbjct: 298 TRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIV 350
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 32.0 bits (72), Expect = 0.004 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%) Query: 74 FGESVQSTGQGVSEIITTGFGPSAIIGLQALII-----SLLVGIAAGTFAALYHGKVIDY 128 +G S+ S G+ +T G+G + I GL++++ SL+ G + A ++ + Sbjct: 1028 YGSSLTS---GIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASH 1084 Query: 129 GVSLLA 134 SL+A Sbjct: 1085 RSSLIA 1090
>SECA#SecA protein signature. Length = 901 Score = 31.0 bits (70), Expect = 0.008 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%) Query: 197 LKERKEKQNTSILLITHDLALVREVADRV-------VVMYGGRVVEKGTIEE 241 + R EK LI A+VRE + RV V + GG V+ + I E Sbjct: 50 FRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAE 101
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 32.8 bits (74), Expect = 0.002 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 11/204 (5%) Query: 124 VKNIDTTFSYTNNQVQQIRKQTGEATKQAQGVSETLAEISSGAEQSAASIQAIVSAVDTT 183 + + ++ Q + + G ++ A + +++ + +A+ A D T Sbjct: 150 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDAT 209 Query: 184 TSIASEVEEKAKQSDELSSEMVQALGHSTRVFTSLIQGIQTLAKENEDSMQNVQKLEERM 243 ++ + KA+++D + ++ T+ +++ +D++ NV +L M Sbjct: 210 VKAGTDAKAKAEKADNILTKFQG---------TANAASQNQVSQGEQDNLSNVARLTMLM 260 Query: 244 KQVEHIVSVVSEIASQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESDHSARNIS 303 IV +E S N LAL +++ R E + A EE RK A+E++ I Sbjct: 261 AMFIEIVGKNTE-ESLQNDLALFNALQEGRQAEMEKKSAEFQEETRK-AEETNRIMGCIG 318 Query: 304 QLLRNMQEEVQQVATKMTEQVKIA 327 ++L + V VA T +A Sbjct: 319 KVLGALLTIVSVVAAVFTGGASLA 342
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 132 bits (334), Expect = 1e-42 Identities = 63/145 (43%), Positives = 95/145 (65%) Query: 1 MKKEKRQRLIKQFVKEYEIEKQERLVELLAKKDVLVTQATVSRDIRELNVTKVPSQEGLM 60 M K +R I++ + EIE Q+ LV++L K VTQATVSRDI+EL++ KVP+ G Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 IYKIFSEEHLQTDIKLKKKLREVVVKIDCVDQLMVIKTLPGNAHVIGVLFDELDWKEKIG 120 Y + +++ KLK+ L + VKID L+V+KT+PGNA IG L D LDW+E +G Sbjct: 61 KYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIMG 120 Query: 121 CICGNDTCLIISQSKSDREILEERL 145 ICG+DT LII ++ D +++++++ Sbjct: 121 TICGDDTILIICRTHDDTKVVQKKI 145
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 541 bits (1396), Expect = 0.0 Identities = 190/409 (46%), Positives = 270/409 (66%), Gaps = 8/409 (1%) Query: 4 PIHVTSEIGELQTVLLKRPGKEVENLTPDYLQQLLFDDIPYLPIIQKEHDYFAQTLRNRG 63 PI++ SEIG L+ VLL RPG+E+ENLTP ++ LFDDIPYL + ++EH+ FA L+N Sbjct: 7 PINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNNL 66 Query: 64 VEVLYLEKLAAEALVD-KKLREEFVDRILKEGQADVNVAHQTLKEYLLSFSNEELIQKIM 122 VE+ Y+E L +E LV L +F+ + + E + + LK+Y S + + +I K++ Sbjct: 67 VEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126 Query: 123 GGVRKNEIETSKKTHLYELMEDHYPFYLDPMPNLYFTRDPAASVGDGLTINKMREPARRR 182 GV E++ + + L +L+ F +DPMPN+ FTRDP AS+G+G+TINKM R+R Sbjct: 127 SGVVTEELK-NYTSSLDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTKVRQR 185 Query: 183 ESLFMEYIIKYHPRFEKHNVPIWLDRDYKFPIEGGDELILNEETIAIGVSARTSAKAIER 242 E++F EYI KYHP + K NVPIWL+R + +EGGDEL+LN+ + IG+S RT AK++E+ Sbjct: 186 ETIFAEYIFKYHPVY-KENVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAKSVEK 244 Query: 243 LAKNLFSRQNKIKKVLAIEIPKCRAFMHLDTVFTMVDYDKFTIHPAIQGPKGNMNIYILE 302 LA +LF + +LA +IPK R++MHLDTVFT +DY FT +IY+L Sbjct: 245 LAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFT---SDDMYFSIYVLT 301 Query: 303 KGSDEETLKIT-HRTSLMEALKEVLGLSELVLIPCGGGDVIASAREQWNDGSNTLAIAPG 361 + I + + + L LG ++ +I C GGD+I AREQWNDG+N LAIAPG Sbjct: 302 YNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAPG 360 Query: 362 VVVTYDRNYVSNTLLREHGIEVIEVLSSELSRGRGGPRCMSMPIVRKDI 410 ++ Y RN+V+N L E+GI+V + SSELSRGRGGPRCMSMP++R+DI Sbjct: 361 EIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 418 bits (1076), Expect = e-150 Identities = 155/311 (49%), Positives = 204/311 (65%), Gaps = 4/311 (1%) Query: 4 RKIVVALGGNAIQ--SGKATAGAQQEALEKTAEQLVKIMENDVDIVIAHGNGPQVGNILL 61 +++V+ALGGNA+Q K + + + KTA Q+ +I+ ++VI HGNGPQVG++LL Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 62 QQKAAE-TEKTPAMPLDTCGAMSQGMIGYWMENAIEKALKKRNIKKDVATVITRVVVDKK 120 A + T PA P+D GAMSQG IGY ++ A++ L+KR ++K V T+IT+ +VDK Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 121 DEAFKNPTKPIGPFYTEEEARRLMDETKAVFKEDAGRGWRRVVPSPKPVSIHEHKVINSL 180 D AF+NPTKP+GPFY EE A+RL E + KED+GRGWRRVVPSP P E + I L Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 181 VEDGNIVIAVGGGGIPVIDSEEGLKGTEAVIDKDFAAQKLAELVDADTLVILTAVDHVYV 240 VE G IVIA GGGG+PVI + +KG EAVIDKD A +KLAE V+AD +ILT V+ + Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 241 NYNQPNQKKLEHVTVNQLEEYIEEQQFAAGSMLPKIEAAINFVNTNPKRKTIITSLEKVY 300 Y ++ L V V +L +Y EE F AGSM PK+ AAI F+ + II LEK Sbjct: 243 YYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLEKAV 301 Query: 301 EALEEKAGTII 311 EALE K GT + Sbjct: 302 EALEGKTGTQV 312
>cloacin#Cloacin signature. Length = 551 Score = 25.4 bits (55), Expect = 0.031 Identities = 13/29 (44%), Positives = 16/29 (55%) Query: 54 DSSHGGSHDCGGSFGGDSGGSCDGGGGGG 82 S G H GGS G+ GG+ + GGG G Sbjct: 48 GGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 84.3 bits (208), Expect = 2e-22 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 12/200 (6%) Query: 1 MRRSAEEIKKEIAYKAESLFSQKGYAATSMEEICEITERSKGSIYYHFKSKEELFLFVVK 60 ++ A+E ++ I A LFSQ+G ++TS+ EI + ++G+IY+HFK K +LF + + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 QHTYDWLEKWNEKEKSYSTNTEKLYGLAEYHVEDIQQPISNAIEEFSMSQVVSK------ 114 + E E + + + + HV ++ ++ M + K Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHV--LESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 115 -EILDELLALT-RESYVMFEKLIEAGIQSGEFRED-NTRDLMYIVNGLLSGL-GVLYYEL 170 ++ + ESY E+ ++ I++ D TR I+ G +SGL + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 171 DYKELKRIYKKAIDVLLKGM 190 +LK+ + + +LL+ Sbjct: 183 QSFDLKKEARDYVAILLEMY 202
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.7 bits (90), Expect = 3e-05 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 34 FIMERTNNDPVSVSL-LSVMEYAPIFIFSFIGGALADRWNPKRTMVAGDVLSVMSIIGIV 92 F +R + D ++ + L+ + I G +A R +R ++ G + I + Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI--L 293 Query: 93 LLLKLDYWEAIFFATLISAIVGQFSQPSSSRIFKRYVKEEQIANAIAFNQTLQSLFLIFG 152 L W + F ++ G P+ + R V EE+ L SL I G Sbjct: 294 LAFATRGW--MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVG 351 Query: 153 PVVGSLVYTQ 162 P++ + +Y Sbjct: 352 PLLFTAIYAA 361 Score = 34.4 bits (79), Expect = 7e-04 Identities = 55/342 (16%), Positives = 122/342 (35%), Gaps = 22/342 (6%) Query: 58 FIFSFIGGALADRWNPKRTMVAGDVLSVMSIIGIVLLLKLDYWEAIFFATLISAIVGQFS 117 F + + GAL+DR+ + ++ + + ++ + ++ +++ I G + Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAA---VDYAIMATAPFLWVLYIGRIVAGITGA-T 112 Query: 118 QPSSSRIFKRYVKEEQIANAIAFNQTLQSLFLIFGPVVGSL---VYTQLGLFTSLYSLII 174 + ++ A F ++ GPV+G L F + + Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGL 172 Query: 175 LFLLSAIALSFLPKWVEQEQVARDSLKNDIKEGWKYVLHTKNLRMITITFTIMGLAVGLT 234 FL LP+ + E+ + +++ + + F IM L + Sbjct: 173 NFLTGCF---LLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 235 NPLEVFLVIERLGMEKEAVQYLAAADGI-GMLIGGIVAAIFASKVNPKKMFVFGMGILAI 293 L V +R + + AA GI L ++ A+++ ++ + GM Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 294 SFLVEGLSTSFWITSFMRFGTGICLACVNI---VVGTLMIQLVPENMIGRVNGTILPLFM 350 +++ +T W M F + LA I + ++ + V E G++ G++ L Sbjct: 290 GYILLAFATRGW----MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTS 345 Query: 351 GAMLIGTSIAGGLKEMTSLV---TVFCIAMALILFAIGPVLR 389 ++G + + + + AL L + P LR Sbjct: 346 LTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL-PALR 386
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.8 bits (111), Expect = 9e-08 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 3/158 (1%) Query: 264 DLGISATNLLIILFVTQIVACPFALLYGKLSETFTGKKMLYVGIIIYIIICTYAYFLKTT 323 D + + + +YGKLS+ K++L GIII + + Sbjct: 43 DFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSF 102 Query: 324 LDFWILAMLV-ATSQGGIQALSRSYFAKLVPKESANEFFGFYNIFGKFAAIMGPVLVGVT 382 I+A + AL A+ +PKE+ + FG +GP + G+ Sbjct: 103 FSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMI 162 Query: 383 TQLTGKTNAGVLSIIVLFIIGGFLLTKVPENNTSVTPP 420 + +L I ++ II L K+ + + Sbjct: 163 AHYIHWSY--LLLIPMITIITVPFLMKLLKKEVRIKGH 198
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 760 bits (1962), Expect = 0.0 Identities = 418/923 (45%), Positives = 583/923 (63%), Gaps = 20/923 (2%) Query: 59 AEEILSFEERLKVGDFSQRPASIPNKAAVKQVKESYSMADLNKMNNQELVETLGSIKWHQ 118 A++I E +V + RP + + + Y+ +LN+MN +LVE + +I + Sbjct: 58 ADQISKTELNNEVATDNNRPLGPSIAPSRARNNKIYTFDELNRMNYSDLVELIKTISYEN 117 Query: 119 ITDLFQFNEDAKAFYKDKGKMQVVIDELAHRGSTFTKDDSKGIQTFTEVLRSAFYLAFYN 178 + DLF FN+ + F+ ++ ++Q +I L G T+T DD KGI T E LR+ +YL FYN Sbjct: 118 VPDLFNFNDGSYTFFSNRDRVQAIIYGLEDSGRTYTADDDKGIPTLVEFLRAGYYLGFYN 177 Query: 179 NELSELNERSFQDKCLPALKAIAKNPNFELGTAEQDTVVSAYGKLISNASSDVETVQYAS 238 +LS LN +++CLPA+KAI N NF LGT QD VV A G+LI NAS+D E + Sbjct: 178 KQLSYLNTPQLKNECLPAMKAIQYNSNFRLGTKAQDGVVEALGRLIGNASADPEVINNCI 237 Query: 239 NILKQYNDNFTTYVNDRMKGQAIYDIMQGIDYDIQSYLIEARKE-ANETMWYGKVDGFIN 297 +L + DN Y ++ KG A++++M+GIDY S + + A T +Y ++D ++ Sbjct: 238 YVLSDFKDNIDKYGSNYSKGNAVFNLMKGIDYYTNSVIYNTKGYDAKNTEFYNRIDPYME 297 Query: 298 EINRIALL-NEVTQENKWLVNNGIYFASRLGKFHSNPNKGLEVVTQAMHMYPRLSEPYFV 356 + + + +++ +N WLVNN +Y+ R+GKF +P+ + +AM YP LS Y Sbjct: 298 RLESLCTIGDKLNNDNAWLVNNALYYTGRMGKFREDPSISQRALERAMKEYPYLSYQYIE 357 Query: 357 AVEQITTNYNGKDYSGNTVDLEKIRKEGKEQYLPKTYTFDDGSIVFKTGDKVSEEKIKRL 416 A + N+ GK+ SGN +D KI+ + +E+YLPKTYTFDDG V K GDKV+EEKIKRL Sbjct: 358 AANDLDLNFGGKNSSGNDIDFNKIKADAREKYLPKTYTFDDGKFVVKAGDKVTEEKIKRL 417 Query: 417 YWAAKEVKAQYHRVIGNDKALEPGNADDILTIVIYNSPEEYQLNRQLYGYETNNGGIYIE 476 YWA+KEVKAQ+ RV+ NDKALE GN DDILT+VIYNSPEEY+LNR + G+ T+NGGIYIE Sbjct: 418 YWASKEVKAQFMRVVQNDKALEEGNPDDILTVVIYNSPEEYKLNRIINGFSTDNGGIYIE 477 Query: 477 ETGTFFTYERTPEQSIYSLEELFRHEFTHYLQGRYEVPGLFGRGDMYQNERLTWFQEGNA 536 GTFFTYERTPE+SIY+LEELFRHEFTHYLQGRY VPG++G+G+ YQ LTW++EG A Sbjct: 478 NIGTFFTYERTPEESIYTLEELFRHEFTHYLQGRYVVPGMWGQGEFYQEGVLTWYEEGTA 537 Query: 537 EFFAGATRTNNVVPRKSIISGLSSDPASRYTAERTLFAKYGSWDFYNYSFALQSYLYTHQ 596 EFFAG+TRT+ + PRKS+ GL+ D +R + L AKYGSWDFYNY FAL +Y+Y + Sbjct: 538 EFFAGSTRTDGIKPRKSVTQGLAYDRNNRMSLYGVLHAKYGSWDFYNYGFALSNYMYNNN 597 Query: 597 FETFDKIQDLIRANDVKNYDAYRENLSKDLKLNEEYQEYMQQLIDNQDKYNVPEVADDYL 656 F+K+ + I+ NDV Y Y ++S D LN++YQ+YM L++N D +VP V+D+Y+ Sbjct: 598 MGMFNKMTNYIKNNDVSGYKDYIASMSSDYGLNDKYQDYMDSLLNNIDNLDVPLVSDEYV 657 Query: 657 AEHAPKSLTAVEKEITETLPMKDAKMTKHSSQFFNTFTLEGTYTGSVTKGESEDWNAMSK 716 H K + + +I E +KD SQFF T+ + GTY G ++GE DW M+ Sbjct: 658 NGHEAKDINEITNDIKEVSNIKDLSSNVEKSQFFTTYDMRGTYVGGRSQGEENDWKDMNS 717 Query: 717 KVNEALEQLGQKEWSGYKTVTAYFVNYRVNSSNEFEYDVVFHG----IAKDDGENKAPTV 772 K+N+ L++L +K W+GYKTVTAYFVN++V+ + + YDVVFHG D NK P Sbjct: 718 KLNDILKELSKKSWNGYKTVTAYFVNHKVDGNGNYVYDVVFHGMNTDTNTDVHVNKEPKA 777 Query: 773 HINGPYNGLVKEGIQFKSDGSKDEDGKIVSYLWDFGDGSTSAEVNPVHVYEREGSYKVAL 832 I + +V+E I F SKDEDG+I +Y WDFGDG S E H Y + G Y+V L Sbjct: 778 VIKSDSSVIVEEEINFDGTESKDEDGEIKAYEWDFGDGEKSNEAKATHKYNKTGEYEVKL 837 Query: 833 RVKDDKGKESKSETTVTVKDGS------LTESEPNNRPEEANRIG-LNTTIKGSLIGGDH 885 V D+ G + + +K + ESEPNN E+AN+I N +KG+L D+ Sbjct: 838 TVTDNNG--GINTESKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDY 895 Query: 886 TDVYTFNVASAKNIDISVLNEYGIGMTWVLHHESDMQNYAAYGQANGNHI---EANFNAK 942 +D Y F+VA N+ I++ N +G+TW L+ E D+ NY Y A GN + + Sbjct: 896 SDKYYFDVAKKGNVKITLNNLNSVGITWTLYKEGDLNNYVLY--ATGNDGTVLKGEKTLE 953 Query: 943 PGKYYLYVYKYDNGDGTYELSVK 965 PG+YYL VY YDN GTY ++VK Sbjct: 954 PGRYYLSVYTYDNQSGTYTVNVK 976 Score = 99.0 bits (246), Expect = 4e-23 Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 47/250 (18%) Query: 762 KDDGENKAPTVHINGPYNGLVKEGIQFKSD----GSKDEDGKIVSYLWDF---------- 807 K + ++ + P N K KS+ G+ E+ Y +D Sbjct: 854 KVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDYSDKYYFDVAKKGNVKITL 913 Query: 808 ---------------GDGST-SAEVNPVHVYEREGSYKVA-----LRVKDDKGKES---- 842 GD + +G + L V + Sbjct: 914 NNLNSVGITWTLYKEGDLNNYVLYATGNDGTVLKGEKTLEPGRYYLSVYTYDNQSGTYTV 973 Query: 843 ------KSETTVTVKDGSLTESEPNNRPEEANRIGLNTTIKGSLIGGDHTDVYTFNVASA 896 K+E T KD ++ E E NN ++A ++ N+ I G+L D D+Y+ ++ + Sbjct: 974 NVKGNLKNEVKETAKD-AIKEVENNNDFDKAMKVDSNSKIVGTLSNDDLKDIYSIDIQNP 1032 Query: 897 KNIDISVLNEYGIGMTWVLHHESDMQNYAAYGQANGNHIEANFNAKPGKYYLYVYKYDN- 955 +++I V N I M W+L+ D+ NY Y A+GN + PGKYYL VY+++N Sbjct: 1033 SDLNIVVENLDNIKMNWLLYSADDLSNYVDYANADGNKLSNTCKLNPGKYYLCVYQFENS 1092 Query: 956 GDGTYELSVK 965 G G Y ++++ Sbjct: 1093 GTGNYIVNLQ 1102
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.8 bits (95), Expect = 2e-05 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 12/194 (6%) Query: 201 QPQIATVKRDATIANAEREKEARIEKARAEKEAKEAEYQRDAQIAEAEKHKELKVQSYKR 260 P + T AE K+ + E++A E Q EA+ + + Q+ + Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 261 EQEQARADADLSYELQQAKAQQGVTEEQMRVKIIEREKQIELEEKEIARREKQYDAEVKK 320 Q + E Q + ++ T E+ E + ++E E+ + + + ++ Sbjct: 1086 AQSGSETK-----ETQTTETKETATVEK------EEKAKVETEKTQEVPKVTSQVSPKQE 1134 Query: 321 KADADRYAVEQSAEAEKVKQIKKADADQYKIEAEARARAEEVRVEGLAKAEIEKAQGQAK 380 +++ + E + E + IK+ + A+ A+E Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTNT-TADTEQPAKETSSNVEQPVTESTTVNTGN 1193 Query: 381 AEVQKAQGTAEADV 394 + V+ + T A Sbjct: 1194 SVVENPENTTPATT 1207
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.006 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 19/105 (18%) Query: 430 ILGNLITNAFE-AIERNEEHNKKVRMFVTDIGEEIVIEVEDSGQGIHDEVITSIFYKGFS 488 ++ L+ N + I + + K + + T + +EVE++G Sbjct: 259 LVQTLVENGIKHGIAQLPQGGK-ILLKGTKDNGTVTLEVENTGSLALKNT---------- 307 Query: 489 TKEGEKRGYGLAKVKELVEDLNG---SIAIEKGDLGGALFIIALP 530 E G GL V+E ++ L G I + + G ++ +P Sbjct: 308 ---KESTGTGLQNVRERLQMLYGTEAQIKLSEKQ-GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 9e-18 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 7 VLIVEDDIRIADIHRRFTGKI---EGFKVIGTATTGEQAKEWLDLVKPQLVLLDVYLPDM 63 +L+ +DD I R + G+ V + W+ LV+ DV +PD Sbjct: 6 ILVADDDAAI----RTVLNQALSRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 64 QGTELVTYIRHNLHDTDIIMITAASETDVVRHALRGGVTDYIVKPL----MFDRFKTSLE 119 +L+ I+ D +++++A + A G DY+ KP + +L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 NYKKKLVQLKKNNQ 133 K++ +L+ ++Q Sbjct: 121 EPKRRPSKLEDDSQ 134
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.002 Identities = 13/32 (40%), Positives = 16/32 (50%) Query: 44 VLVGPSGCGKSTLLRMIAGLEEISSGDLIINE 75 VL G G GKSTL+ + GL+ S I Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 39.3 bits (91), Expect = 2e-05 Identities = 71/327 (21%), Positives = 119/327 (36%), Gaps = 43/327 (13%) Query: 131 IKKDKYDTSKLEKAITNYYSVDGKMYSMPFNSSTPVLIYNKDAFAKAGLDPEKAPKTYAE 190 I DK KL + +GK+ + P LIYNKD PKT+ E Sbjct: 105 ITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLP-------NPPKTWEE 157 Query: 191 LQEAAKKLTIKEGGNVKQYGFSMLNYGWFFEELLATQGALYVDNENGRKEAAKKAVFNGK 250 + K+L K G + + + W L+A G ENG+ + V N Sbjct: 158 IPALDKELKAK-GKSALMFNLQEPYFTW---PLIAADGGYAFKYENGKYDIKDVGVDNAG 213 Query: 251 EGQKVFGMLDELNKAGALGKYGASWDDIRAAFQSGQVAMYLDSSAGVRDLIDASKFNVGV 310 + ++D + + AAF G+ AM ++ + ID SK N GV Sbjct: 214 AKAGLTFLVDLIKNKHM--NADTDYSIAEAAFNKGETAMTINGPWAWSN-IDTSKVNYGV 270 Query: 311 SYIPYPEDSKQN---GVIIGGASLWMTNMVSEETQQGAWDFMKYLTKPDVQAKWHTATGY 367 + +P + GV+ G + N K L K ++ T G Sbjct: 271 TVLPTFKGQPSKPFVGVLSAGINAASPN--------------KELAKEFLENYLLTDEGL 316 Query: 368 FSINPD----AYNEPLVKEQYEKYPQLKVTVDQLQATKQSPATQGALISVFPESRDAVVK 423 ++N D A +E+ K P++ T++ Q +G ++ P+ Sbjct: 317 EAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQ--------KGEIMPNIPQMSAFWYA 368 Query: 424 ALEAMYDGKNSKEALDEAAKATDRAIS 450 A+ + + ++ +DEA K I+ Sbjct: 369 VRTAVINAASGRQTVDEALKDAQTRIT 395
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 1e-24 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGFE 60 +LV +D+A++ + Q L ++V N + D ++ DV+MP+ + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARI-RALLRRSG 119 ++ +I+ + + PVL ++A+++ +K + G DY+ KPF EL I RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 SLTTKQTIRYKGIELFGKDK 139 + + G+ L G+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSA 144
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.005 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 24/102 (23%) Query: 315 LLDNAMKY----TNEGGHIQIDCTQMNSSIRIRVKDDGIGVKDEDIPKLFNRFYQGDKAR 370 L++N +K+ +GG I + T+ N ++ + V++ G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK-------------- 308 Query: 371 SASEGAGLGLSIANWIVEKHYGK---ILVESRWGEGTCFEVI 409 E G GL ++ YG I + + G+ +I Sbjct: 309 ---ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>PF06580#Sensor histidine kinase Length = 349 Score = 37.2 bits (86), Expect = 1e-04 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 19/99 (19%) Query: 434 LIDNALE-AVTNCEKK-QVEVEIQY-GDTLTITVQDTGKGIQEEEIGALFTKGYSTKGDN 490 L++N ++ + + ++ ++ T+T+ V++TG + ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT------------KES 310 Query: 491 RGYGLYLVKESIQRINGK---IHVYSLVGKGTTITIEIP 526 G GL V+E +Q + G I + GK + IP Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA-MVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Query: 2 IKVLIVEDDPMVAMLNTHYLEQAGGFELVQAVNSVKSAIEVLEASRVDLVLLDIFMPEET 61 +L+ +DD + + L +AG V+ ++ + + A DLV+ D+ MP+E Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIYREK 121 F+LL I+ ++ ++++SA + + KA + G DYL KPF E + I Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT---ELIGIIGRA 118 Query: 122 LTFMKEQQK 130 L K + Sbjct: 119 LAEPKRRPS 127
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 27.4 bits (60), Expect = 0.019 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 74 INNNAEINKEIELKLVEPALEYVSHEQF 101 ++N I KE+ L L EP +E V E+F Sbjct: 128 VDNAETIKKELGLSLTEPLMEQVGTEEF 155
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 30.5 bits (68), Expect = 0.022 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 176 IETLFTVINKLRKEGVSFVYIS-HRMEEIFSICDTIT---ILRDGEYVGKRSIPETSFDE 231 +++L I+ L VS Y++ H ++I I + I ++D ++S T++D Sbjct: 637 MDSLLNNIDNLDVPLVSDEYVNGHEAKDINEITNDIKEVSNIKDLSSNVEKSQFFTTYDM 696 Query: 232 VVSMMVGRSIGERYPER--NSQVGDVIFEIRNGTKKG 266 + + GRS GE + NS++ D++ E+ + G Sbjct: 697 RGTYVGGRSQGEENDWKDMNSKLNDILKELSKKSWNG 733
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.026 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%) Query: 74 EETKKAVEKYIEKKQGDQANKEIFPADTAKEASDFVKKVKE---KKMEEKEKVK--KPEK 128 +K ++ E K+ + K A EA K +KE K+ EE K++ K Sbjct: 410 AALEKLNKELEESKKLTEKEKAELQAKLEAEA----KALKEKLAKQAEELAKLRAGKASD 465 Query: 129 NVSPEQKPEPNKKQLNGQVPTSKAKQAPYKGSVRTDK 165 + +P+ KP GQ P + K K ++ K Sbjct: 466 SQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETK 502
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 89.1 bits (221), Expect = 1e-21 Identities = 67/355 (18%), Positives = 129/355 (36%), Gaps = 13/355 (3%) Query: 4 FIYFIVIVAFLDTFSQLPIMSTFAQSLGGSPLII---GLVVGMYSFANMIGNIIAGAAVD 60 I V + + +P++ + L S + G+++ +Y+ + GA D Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 61 KFGAKKILYISMGLTSFIVLLYTVVQSGEQLLVVRFMHGFSDGFLIPAAFTFLSKQTNSA 120 +FG + +L +S+ + + L + R + G + G A +++ T+ Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGD 127 Query: 121 RQGKAMALSGAAVGTAAIVGPAFSGIMKATAGIEWVFITISILMVLGTIVSLFFLPNNVS 180 + + A G + GP G+M F + L L + F LP S Sbjct: 128 ERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPE--S 184 Query: 181 RKDTSRTQMMNKEDMFELLKSEPLLQAYIGAFTLMF-----SQGIVTYMLPVKVEALALK 235 K R + + + + F Q + + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 236 ASTTGMMLSVFGITAILFFLLPTNRIYDRFNRSKLMLIGIAVMALALSLLGLFATKGMLF 295 A+T G+ L+ FGI L + T + R + +++G+ LL FAT+G + Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL-AFATRGWMA 303 Query: 296 IVMMIYGIGFAILFPSINALLVENTTDDKRGKAFGLFYAFFSLGVVAGSFTVGAI 350 +M+ I P++ A+L ++++G+ G A SL + G AI Sbjct: 304 FPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 6e-05 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%) Query: 42 LYVMKEEGEIIGVAGLHVLGEDLAEVRSLVVSHTYAGKGIGRMLVNHVINEAAKIKVSRV 101 ++ E IG + A + + V+ Y KG+G L++ I E AK Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAI-EWAKENHFCG 125 Query: 102 ISLTYET------EFFQKCGF 116 + L + F+ K F Sbjct: 126 LMLETQDINISACHFYAKHHF 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 44.3 bits (104), Expect = 1e-07 Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 18/223 (8%) Query: 2 KYTVITGASSGIGYEAALAFASRGKNLILVARRQEELDRL--KLKINEMNPE---LDVVI 56 K ITGA+ GIG A AS+G ++ V E+L+++ LK + E DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV-- 66 Query: 57 RRTDLSITENVYKLYESLQTFQIETWINNAGFGNFASIAKQNLNKIEKMLHVNIEALTIL 116 R +I E ++ + I+ +N AG I + + E VN + Sbjct: 67 -RDSAAIDEITARIER--EMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 117 SSLFVRDYSMVDGTQLINVSSGGGYTIVANAVTYCATKFYVSAFTEGLSHELREQGAKLQ 176 S + ++ V S + Y ++K FT+ L EL E ++ Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN--IR 181 Query: 177 AKVLAPAATETEFAKRSFDIDEFQYDNVVPKFHTAKQMAQFML 219 +++P +TET+ + S DE + V+ + F Sbjct: 182 CNIVSPGSTETDM-QWSLWADENGAEQVIKGS-----LETFKT 218
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.007 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 12/104 (11%) Query: 3 TISEVAKLIGVSTHTLRYY--EKENILIANRNTNGNRVYDESHITWLQFVMKL--KQTQM 58 ++ E+AK GV+ + ++ +K ++ +++ S + ++ K Sbjct: 33 SLGEIAKAAGVTRGAIYWHFKDKSDLFSE--------IWELSESNIGELELEYQAKFPGD 84 Query: 59 PIAKIREYARLYLEGEHTTEARLQLLEDHRKSIQDQRENLVITE 102 P++ +RE LE T E R L+E + E V+ + Sbjct: 85 PLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.8 bits (186), Expect = 2e-19 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 8/168 (4%) Query: 1 MNKKEKIVYAAIEVFQEKGVEKTKISDIVKLAGIAQGTFYLYFPSKLSVMPAIAEVMVEK 60 ++ I+ A+ +F ++GV T + +I K AG+ +G Y +F K + I E+ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 61 MILAVKEKVQNDAPFSNK-VTQVIDAVFHFIAEYREIQALMYAGLASTEHIKEWEAV--- 116 + E + +++ V + LM E + E V Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQA 129 Query: 117 ----YEPLYMWLSEFLSGAKEAGEIRDSVHAERTAKLFIALVESAAEQ 160 Y + + L EA + + R A + + E Sbjct: 130 QRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 257 bits (659), Expect = 9e-85 Identities = 94/380 (24%), Positives = 172/380 (45%), Gaps = 15/380 (3%) Query: 12 LVILLSNIFIAFLGIGLIIPVMPSFMNDMGLTGK---TMGYLVAVFAMAQLIASPITGRW 68 L+++LS + + +GIGLI+PV+P + D+ + G L+A++A+ Q +P+ G Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 69 VDLYGRKKMIIIGLFIFGVSELLFGLGTDVWMLYAARVLGGISAAFIMPGVTAYVADITS 128 D +GR+ ++++ L V + +W+LY R++ GI+ A AY+ADIT Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA-TGAVAGAYIADITD 125 Query: 129 MQERPKAMGYLSAAISTGFIIGPGIGGFIAEYGIRVPFFVAAAIAFIACVISIFILKEPL 188 ER + G++SA G + GP +GG + + PFF AAA+ + + F+L E Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH 185 Query: 189 TKEE--LAEISSNTKESSFIGDLKKSLHPMYAIAFIIVFVLAFGLSAYETVFSLFSDHKF 246 E L + N S + + A+ FI+ V ++ +F + +F Sbjct: 186 KGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP----AALWVIFGEDRF 241 Query: 247 GFTPKDIAAIITISSIFGVVVQVFMFGKLVDIFGEKVLIQICLIVGAVLAFVSTVVFNYW 306 + I + I + Q + G + GE+ + + +I + W Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 307 IVLLVTCFIFLAFDLLRPALTTFLSKAAGKE-QGFVAGMNSTYTSLGNIAGPAMGGILFD 365 + + + + + PAL LS+ +E QG + G + TSL +I GP + ++ Sbjct: 302 MAFPIM-VLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 366 MNIHYPYAFSGVVLIVGLAI 385 +I ++G I G A+ Sbjct: 361 ASITT---WNGWAWIAGAAL 377 Score = 33.6 bits (77), Expect = 0.001 Identities = 22/119 (18%), Positives = 42/119 (35%) Query: 271 MFGKLVDIFGEKVLIQICLIVGAVLAFVSTVVFNYWIVLLVTCFIFLAFDLLRPALTTFL 330 + G L D FG + ++ + L AV + W++ + + A Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 331 SKAAGKEQGFVAGMNSTYTSLGNIAGPAMGGILFDMNIHYPYAFSGVVLIVGLAITFMW 389 G E+ G S G +AGP +GG++ + H P+ + + + Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 111 bits (278), Expect = 1e-30 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Query: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 M+ +LV DD++ +R ++ L GY+ N + + D VV D++MP+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGLSVCKEIRKT-SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119 + + I+K D+P++ ++A+ + GA DY+ KPF ELI + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RYTKQEQQEE 129 ++ + E Sbjct: 121 EPKRRPSKLE 130
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 4e-05 Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 32/188 (17%) Query: 275 EKVTQLIHKEADRMQRLVHDLLD-----LAQLEGEHFPLKKQPIVFSQLIEDVLDTYEIK 329 + LI ++ + + ++ L + L L + +++ L I+ Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADE----LTVVDSYLQLASIQ 235 Query: 330 FIEKKIRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGDIIVTLRQIDDYCEL 388 F E +++ +NP I+ V + +Q ++ N + + I Q G I++ + + L Sbjct: 236 F-EDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 389 NIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQ-IVHIHDGQWR--IES 445 +++TG A TG GL VR+ + ++ + + + Sbjct: 295 EVENTG------------------SLALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSE 336 Query: 446 EKGNGTTV 453 ++G + Sbjct: 337 KQGKVNAM 344
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.6 bits (71), Expect = 0.007 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%) Query: 88 KTKEEAAKYIQDVAKKKQAKKVVKSKSMVTEEISMNHALEEIGCEVLE--SDLGEYILQV 145 KT++E K + K + K T+++ L++I +VLE S+LG I Sbjct: 53 KTEKEKFKDSINNLVKTEFTNETLDKIQQTQDL-----LKKIPKDVLEIYSELGGEIYFT 107 Query: 146 DNDPPSHIIAPALHKNRTQIRDVFKEK 172 D D H L + + EK Sbjct: 108 DIDLVEHKELQDLSEEEKNSMNSRGEK 134
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 134 bits (338), Expect = 2e-40 Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 35/264 (13%) Query: 4 YVYALLAGMVFGSFFMVIAMRVPL------------------------GESIITPRSYCH 39 + L ++ GSF V+ R+P+ +++ PRS C Sbjct: 16 FSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCP 75 Query: 40 YCKYVLKPKELIPIISFCMQRGRCTNCKRKISILYVVFELVTGMICLLTVYMIGVERELI 99 +C + + E IP++S+ RGRC C+ IS Y + EL+T ++ + + + Sbjct: 76 HCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTL 135 Query: 100 IVLSLFSLLLIISVTDYIYMLIPNRI---LAWFACLLILECVFIPLVTWIDSIVGSCVIF 156 L L +L+ ++ D ML+P+++ L W L L F+ L D+++G+ + Sbjct: 136 AALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLG---DAVIGAMAGY 192 Query: 157 ILLYCMQKIY-----PEGLGGGDIKLLSLLGFIVGLKGIFIVLFLASCFSLCFFGAGLVL 211 ++L+ + + EG+G GD KLL+ LG +G + + IVL L+S ++L Sbjct: 193 LVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILL 252 Query: 212 KRMKMRTQIPFGPFISLGAICYML 235 + IPFGP++++ +L Sbjct: 253 RNHHQSKPIPFGPYLAIAGWIALL 276
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 63.0 bits (153), Expect = 6e-14 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 21/129 (16%) Query: 110 SVVIVDNLIFDTGDANVKPEAKEIISKLVGFFQSV---PNSIVVEGHTDSR--PIHNEKF 164 + +++F+ A +KPE + + +L ++ S+VV G+TD +N+ Sbjct: 214 HFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQG- 272 Query: 165 PSNWELSSARAANMIHHLIEVYNVEDKRLAAVGYADTKPVVPN---------DSPQNWEK 215 LS RA +++ +LI + +++A G ++ PV N Sbjct: 273 -----LSERRAQSVVDYLIS-KGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAP 326 Query: 216 NRRVVIYIK 224 +RRV I +K Sbjct: 327 DRRVEIEVK 335
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 5e-22 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 4 KILVVDDAMFMRTMIKNLLKSNSEFEVIGEAENGVEAIQKYKELQPDIVTLDITMPEMDG 63 ILV DD +RT++ L + + N + D+V D+ MP+ + Sbjct: 5 TILVADDDAAIRTVLNQAL--SRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 LEALKEIMKIDSSAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQADRVIEA 115 + L I K V++ SA + A + GA D++ KPF +I Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 1e-04 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 53/136 (38%) Query: 399 LIRNAIDHGIETVEKRRDAGKNETGTIKLEAFHSGNHVVIQITDDGNGIHKGKVLEKAIK 458 L+ N I HGI + G I L+ V +++ + G+ K Sbjct: 263 LVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALK--------- 305 Query: 459 NGVVTESEANKLTDREVFDLIFQPGFSTAEVVSDLSGRGVGLDVVKHTIHSLGG---HLI 515 + G GL V+ + L G + Sbjct: 306 --------------------------------NTKESTGTGLQNVRERLQMLYGTEAQIK 333 Query: 516 IDSEEGKGSTFRIELP 531 + ++GK + +P Sbjct: 334 LSEKQGKV-NAMVLIP 348
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 44.2 bits (104), Expect = 3e-07 Identities = 26/106 (24%), Positives = 47/106 (44%) Query: 263 IVMLGVLMLFALIAIGISLVLVAFSKNSASANAMQNMIIVPTCLLAGCYFPYDIMPKAVQ 322 + L V+ L L + +V+ A + + Q ++I P L+G FP D +P Q Sbjct: 148 LYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQ 207 Query: 323 KVANFLPQRWLLDTIAKLQQGIPFAELYLNIFILFAFAIAFFLIAI 368 A FLP +D I + G P ++ ++ L + + F ++ Sbjct: 208 TAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLST 253
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.8 bits (67), Expect = 0.009 Identities = 55/244 (22%), Positives = 78/244 (31%), Gaps = 85/244 (34%) Query: 5 KRVLIKLSGGAL--ADQTGNSFNSKR-LEHIANEILSIVDLGIEVSIVIGG----GNIFR 57 KRV+I L G AL Q G+ + A +I I+ G EV I G G++ Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 58 GHLA-------EEWGIDRVEADNIGTLGTII-----NSLMLRG----VLTSKTNTEV--- 98 A +D A + G +G +I N L RG V+T T T V Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKN 122 Query: 99 ----------------------------------------RVMTS-IPFNAVAEPYIRLR 117 RV+ S P V I+ Sbjct: 123 DPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKL 182 Query: 118 AIHHLDNGYIVIFGGGNGQPFVTT-------------DYPSVQRAIEMNSDAILVAKQGV 164 ++ G IVI GG G P + D + A E+N+D ++ V Sbjct: 183 ----VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILT-DV 237 Query: 165 DGVF 168 +G Sbjct: 238 NGAA 241
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 5e-05 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 20/130 (15%) Query: 297 LGKDIRFSKHIEGEHAAYHV--YTVLSIFNNLVANAVEAIEDRGLIRIKLYKREQHVIFE 354 ++F I V V ++ N + + + + G I +K K V E Sbjct: 236 FEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 355 VIDDGPGIAQKYKKLVFKPGFTSKYDQTGTPSTGIGLSYIDEMVTEL-GGEVRLEDNENG 413 V + G + K+ STG GL + E + L G E +++ +E Sbjct: 296 VENTGSLALKNTKE-----------------STGTGLQNVRERLQMLYGTEAQIKLSEKQ 338 Query: 414 NGCKFIVCLP 423 +V +P Sbjct: 339 GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.3 bits (128), Expect = 5e-10 Identities = 29/177 (16%), Positives = 70/177 (39%), Gaps = 10/177 (5%) Query: 5 IVDDDEVFRSMLSQIIEDGDLGEVIGESEDGAFVEAEQLNYKKVDILFIDLLMPMRDGIE 64 + DDD R++L+Q + I + + D++ D++MP + + Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA---GDGDLVVTDVVMPDENAFD 64 Query: 65 TVRHIASSFTG-KIIMISQVESKQLIGEAYTLGVEYYITKPLNKIEVVSVVRKVIERIRL 123 + I + ++++S + +A G Y+ KP + E++ ++ + + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 ERSIYDIQKSLNNVFQWEKPQMRSETVQEEKKISDSGRFLLAELGIAGENGS-KDLL 179 S + M+ E + ++ + L+ I GE+G+ K+L+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQ-EIYRVLARLMQTDLTLM----ITGESGTGKELV 176
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 161 bits (408), Expect = 1e-45 Identities = 84/404 (20%), Positives = 176/404 (43%), Gaps = 15/404 (3%) Query: 8 KIVLLMCLGIFLCMIDTTIMNIALPAIQTSVNTSLEKMSWVLNVYTMTIAVLAIPLGRIA 67 +I++ +C+ F +++ ++N++LP I N +WV + +T ++ G+++ Sbjct: 14 QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 68 DIFGKAKMYILGLVIFGGGSVLCAFANTGDF-LIFSRFIQSVGAAILFPTSMVIGVSAMP 126 D G ++ + G++I GSV+ ++ LI +RFIQ GAA MV+ +P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 127 LAKRHVALAILGVTQGLSAAMGPVIGGIITQNFGWRWVFFVNVPICILGILLCCTMLKIK 186 R A ++G + +GP IGG+I W ++ + + I L + K Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL---K 190 Query: 187 NEERIISKIDWVGLLLSSLAIFSFTLILVKGNTWGWQSNIALSCYALSTISLILFVLVER 246 E RI D G++L S+ I F ++ + + +S +S ++FV R Sbjct: 191 KEVRIKGHFDIKGIILMSVGIVFF-MLFTTSYSISFLI--------VSVLSFLIFVKHIR 241 Query: 247 KIHNPMVNLNLFKDRMFVGASIVVILSNVFLIGVTVLLPTFLTKIQGRTEIEAAFLVT-P 305 K+ +P V+ L K+ F+ + + + G ++P + + + E ++ P Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 306 ISVMIFFVSPAAATLIKKLGKVTIILSGFLVMGLSYYWLQMIDVNSTNIEIIIPCMILGA 365 ++ + L+ + G + ++ G + +S+ + ++ II +LG Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG- 360 Query: 366 GYGLVVGPITVLSASSFEGELLTASQSVVSMLRQVGIVLAVAIF 409 G I+ + +SS + + A S+++ + +AI Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.7 bits (98), Expect = 3e-06 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 13/189 (6%) Query: 13 RTLIIVSISQMFGGAGLAAGITVGALLAQQMLGTDAFA---GLPAAMFTMGSAVAAFFVG 69 R LI++ + G+ + V L + ++ ++ G+ A++ + A +G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 70 KLSQKYGRRVGLAAGFIVGGLGAIGVVLAALINSIILLLVSLLIYGAGTATNLQARYAGT 129 LS ++GRR L A+ + A + +L + ++ G AT A Sbjct: 65 ALSDRFGRRPVLLVSLA---GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 130 DLANKKQRATAISITMVMTTFGAVAGPNLVGVMGRFAHSIGIPELAGPFILSAAAFILAG 189 D+ + +RA FG VAGP L G+MG F+ PF +AA L Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHA-------PFFAAAALNGLNF 174 Query: 190 LVLFVMLRP 198 L +L Sbjct: 175 LTGCFLLPE 183 Score = 29.8 bits (67), Expect = 0.019 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 5/113 (4%) Query: 59 MGSAVAAFFVGKLSQKYGRRVGLAAGFIVGGLGAIGVVLAALINSIILLLVSLLIYGAGT 118 + S A G ++ + G R L G I G G I + A ++V LL G Sbjct: 258 LHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMV-LLASGGIG 316 Query: 119 ATNLQARYAGTDLANKKQRATAISITMVMTTFGAVAGPNLVGVMGRFAHSIGI 171 LQA + ++Q S+ +T+ ++ GP L + +A SI Sbjct: 317 MPALQA-MLSRQVDEERQGQLQGSLAA-LTSLTSIVGPLLFTAI--YAASITT 365
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 33.5 bits (76), Expect = 0.002 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Query: 288 IHVVDYANP-NYEQLIDITNETLKKIGVENIPTIYAYN---------KSDMVDVEIPKVQ 337 I+ D N NY L+++ +K I EN+P ++ +N + + + Sbjct: 92 IYTFDELNRMNYSDLVEL----IKTISYENVPDLFNFNDGSYTFFSNRDRVQAIIYGLED 147 Query: 338 EDRVYLSAKKHVGIEELVEMIRSHIYKEY 366 R Y +A GI LVE +R+ Y + Sbjct: 148 SGRTY-TADDDKGIPTLVEFLRAGYYLGF 175
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 40.6 bits (95), Expect = 8e-06 Identities = 49/264 (18%), Positives = 92/264 (34%), Gaps = 8/264 (3%) Query: 63 MTSSIMQPVFGMYSDKKPSPFLLPLGMFSSMLGMIGLAFAPNFIIVIISVLFIGLGSAVF 122 + PV G SD+ +L + + + + +A AP ++ I + G+ A Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG 113 Query: 123 HPEGARVAYMASGAKRGLAQAIYQVGGNTGNSLAPIFTALIFVPLGQIGS-LGFTAFAAV 181 GA +A + G +R G P+ L +G F A AA+ Sbjct: 114 AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL----MGGFSPHAPFFAAAAL 169 Query: 182 GIVLLIFVSNWYRNELATGAVRRKKRAALEAEHAIVSTHIKFVILLLVFLTFVRSWYGAG 241 + + E G R +R AL + V+ L+ + F+ G Sbjct: 170 NGLNFLTGCFLLP-ESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQV 228 Query: 242 IGNFYQFYLIEHYGLSIKNAQYFVFAFMIAGVLG-TFFGGPLADRFGKKTIIVFSMLGSA 300 + + + + + AF I L GP+A R G++ ++ M+ Sbjct: 229 PAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADG 288 Query: 301 PLALLLPHVSLVWVV-PLFLCIGF 323 +LL + W+ P+ + + Sbjct: 289 TGYILLAFATRGWMAFPIMVLLAS 312 Score = 40.6 bits (95), Expect = 9e-06 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 8/154 (5%) Query: 223 FVILLLVFLTFVRSWYGAGIGNFYQFYLIEHYGLSIKNAQ---YFVFAFMIAGVLGTFFG 279 VIL V L V G G+ L+ S + + + Sbjct: 8 IVILSTVALDAV----GIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVL 63 Query: 280 GPLADRFGKKTIIVFSMLGSAPLALLLPHVSLVWVVPLFLCIGFISSSSFSVIVVYAQEL 339 G L+DRFG++ +++ S+ G+A ++ +WV+ + + I+ ++ +V Y ++ Sbjct: 64 GALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADI 123 Query: 340 VPGKVGMVSGLIVGLAFGLG-ALGSVVLGKLADI 372 G + FG G G V+ G + Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF 157
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 32.1 bits (73), Expect = 0.004 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 38/181 (20%) Query: 160 AFYQEREIVIGNSTYPLPATLTVPKHKAGEKVPVVVLVHG-AGIHDRDSTYMGTKILRDL 218 AF E +G + P+ + V + K P+V+ + G G D + + Sbjct: 20 AFADEFADNLGLTLLPVEPSTQVNAASSHTKPPLVIFLSGDGGWATLD---------KAV 70 Query: 219 AVGLSSNGIAV-----LRY--EKRTLEHALKMSAEPVTLDRDTTDDAIYAAKSAAQQEGI 271 L G V L+Y +++ + D T D + + G Sbjct: 71 GGILQQQGWPVVGWSSLKYYWKQKDPK--------------DVTQDTLAIIDKYQAEFGT 116 Query: 272 DPNNIFILGHSLGAGTMPRILSKAPSLL---VRGSILLAPPARALTDIAIDQNQYLGAPK 328 + ++G+S GA +P +L++ P+ V G++LL+P + D I ++ + + Sbjct: 117 --QKVILIGYSFGAEVIPFVLNEMPARYRKNVLGAVLLSPSQSS--DFEIHVSEMVTSDN 172 Query: 329 E 329 + Sbjct: 173 Q 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99 bits (249), Expect = 2e-26 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 13/169 (7%) Query: 1 MEKNSILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQM 60 M +IL+ DDD I +N L + G+ V N I + L + D++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGIELCRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 119 + +L RI++ LP++ +SA+++ + + GA DY+ KPF E I + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 120 RYTYFNQNAVQVIKKKINIRGL---------EIDEVSRT---VMLYGET 156 + + + G + + +T +M+ GE+ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.013 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 23/103 (22%) Query: 254 VISNSIMYG----KDGKEIVIQVSKRDMNVEIEIKNFGQCIPDENLPYVFEKFYRGEKSR 309 ++ N I +G G +I+++ +K + V +E++N G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS----------------LALKN 306 Query: 310 SSHTGGKGMGLAIARSIAELHKGD--ITVRSNEKETVFTIALP 350 + + G G+ R + L+ + I + + + + +P Sbjct: 307 TKESTGTGLQNVRER-LQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.021 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Query: 202 SGTYLILAHLKQG---SIKVKEGQHVNEGEFLAQV 233 SG + ++ I VKEG+ V +G+ L ++ Sbjct: 93 SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKL 127
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 329 bits (845), Expect = e-117 Identities = 164/261 (62%), Positives = 198/261 (75%), Gaps = 5/261 (1%) Query: 1 MNLGEFDGKTVLVTGAAQGIGSVVAKMFLERGATVIAVDQNEEGLNELLNEI-----HLK 55 MN +GK +TGAAQGIG VA+ +GA + AVD N E L ++++ + H + Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 56 TFCLDVSDSTAVEQMVNDIENEIAPIDILVNVAGVLRMGAIHSLSDEDWNKTFSVNSTGV 115 F DV DS A++++ IE E+ PIDILVNVAGVLR G IHSLSDE+W TFSVNSTGV Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 116 FYMSRAVSKHMMQRKSGAIVTVGSNAANTPRMEMAAYAASKAATTMFMKCLGLELAAYNI 175 F SR+VSK+MM R+SG+IVTVGSN A PR MAAYA+SKAA MF KCLGLELA YNI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 176 RCNVVSPGSTETEMQRLLWADENGEKNIIAGSQSTYRLGIPLQKIAQPSEIAEAVLFLAS 235 RCN+VSPGSTET+MQ LWADENG + +I GS T++ GIPL+K+A+PS+IA+AVLFL S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 236 DKASHITMHNLCVDGGATLGV 256 +A HITMHNLCVDGGATLGV Sbjct: 241 GQAGHITMHNLCVDGGATLGV 261
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 392 bits (1008), Expect = e-140 Identities = 178/306 (58%), Positives = 231/306 (75%), Gaps = 9/306 (2%) Query: 1 MAIPSISVYKMPIESELPKNKVNWTPDPKRAVLLIHDMQEYFLDAYSDKESPKVELISNI 60 MAIP+I Y+MP S++P+NKV+W PDP RAVLLIHDMQ YF+DA++ SP EL +NI Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 61 KMIREKCKELGIPVVYTAQPGGQTLEQRGLLQDFWGDGIPAGPDKKKIVDELTPDEDDIF 120 + ++ +C +LGIPVVYTAQPG Q + R LL DFWG G+ +GP ++KI+ EL P++DD+ Sbjct: 61 RKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLV 120 Query: 121 LTKWRYSAFKKTNLLEILHEQGRDQLIICGIYAHIGCLLTACEAFMDGIQPFFVADAVAD 180 LTKWRYSAFK+TNLLE++ ++GRDQLII GIYAHIGCL+TACEAFM+ I+ FFV DAVAD Sbjct: 121 LTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVAD 180 Query: 181 FSLEYHKQALEYASNRCAVTTSTSLLLNDLQSVKGD---------ESEGITIQEVHELVA 231 FSLE H+ ALEYA+ RCA T T LL+ LQ+ D + T + + + +A Sbjct: 181 FSLEKHQMALEYAAGRCAFTVMTDSLLDQLQNAPADVQKTSANTGKKNVFTCENIRKQIA 240 Query: 232 QLLREPVESIDIDEDLLNRGLDSVRIMSLVEKWRREGKEITFADLAERPTVAGWYSLLSS 291 +LL+E E I EDLL+RGLDSVRIM+LVE+WRREG E+TF +LAERPT+ W LL++ Sbjct: 241 ELLQETPEDITDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLTT 300 Query: 292 QTAQVL 297 ++ QVL Sbjct: 301 RSQQVL 306
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 124 bits (313), Expect = 3e-33 Identities = 88/398 (22%), Positives = 174/398 (43%), Gaps = 14/398 (3%) Query: 20 FMAAMDATIVNVALQTISKELQVPPSAMGTVNVGYLVSLAVFLPISGWLGDRFGTKRVFL 79 F + ++ ++NV+L I+ + PP++ VN ++++ ++ + G L D+ G KR+ L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 80 TALFVFTTASALCGIANDITSLNIF-RIIQGAGGGLLTPVGMAMLFRTFSPEERPRISRF 138 + + S + + + SL I R IQGAG + M ++ R E R + Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 139 IVLPIAVAPAVGPIIGGFFVDQMSWRWAFYINLPFGIMALLFGLLFLKEHIEKSAGRFDY 198 I +A+ VGP IGG + W++ + +P + + L+ L + + G FD Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIH--WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 199 LGFVFSAPGFAMLIYALSQGPSRGWISTEVISTGIAGVVFITLFIIVELKVKQPMLDLRL 258 G + + G + ++ IS I V+ +F+ KV P +D L Sbjct: 202 KGIILMSVGIVFFMLF---------TTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 259 FKEPVFRKMSLISLFSSAGLLGMLFVFPLMYQNVIGVSALESG-LTTFPEAIGLMISSQI 317 K F L + G + + P M ++V +S E G + FP + ++I I Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 318 VPWSYKKLGARKVISIGLICTAIIFILLSFVNHDTNPWQIRVLLFGIGIFLGQSVGAVQF 377 + G V++IG+ ++ F+ SF+ T+ + +++F +G L + + Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTVIST 371 Query: 378 SAFNNITPPSMGRATTIFNVQNRLGSAIGVAVLASILA 415 +++ G ++ N + L G+A++ +L+ Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 38.1 bits (88), Expect = 2e-05 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 27/131 (20%) Query: 53 RARFIIGCVISRLVLGKMLSMSPVQVPINRMCPVCKLQHGRPQLPEGMPQLSVSHSGEWV 112 +A + G + + L + + + V ++ +P P+G+ S+SH Sbjct: 47 KAEHLAGRIAAVHALRE-VGVRTVPGMGDK---------RQPLWPDGLFG-SISHCATTA 95 Query: 113 VVAFTKSAPVGVDVEQMNPNVDVMKMAEGVLTDIE--IAQVMKLPNEQKIEGFLTYWTR- 169 + A +G+D+E++ ++A ++ E I Q LP Sbjct: 96 L-AVISRQRIGIDIEKIMSQHTATELAPSIIDSDERQILQASLLPFP--------LALTL 146 Query: 170 ----KEAVLKA 176 KE+V KA Sbjct: 147 AFSAKESVYKA 157
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 124 bits (313), Expect = 3e-41 Identities = 57/89 (64%), Positives = 74/89 (83%) Query: 2 NKTELIKNVAQSADISQKDASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTGR 61 NK +LI VA++ ++++KD++AAV +VF +++ L G+KVQLIGFG FEVRER+AR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 NPQTGEEI+I A KVPAFKAGK LK+AVK Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 269 bits (688), Expect = 4e-90 Identities = 105/304 (34%), Positives = 152/304 (50%), Gaps = 19/304 (6%) Query: 110 TPNDPYFNN-QYGLQKIQAPQAWDSQRSDPGVKVAIIDTGVQGSHPDLASKVIYGHDYVD 168 + N G++ IQAP W+ R GVKVA++DTG HPDL +++I G ++ D Sbjct: 13 IKQEQQVNEIPRGVEMIQAPAVWNQTRGR-GVKVAVLDTGCDADHPDLKARIIGGRNFTD 71 Query: 169 NDN----TSDDGNGHGTHCAGITGALTNNSVGIAGVAPQTSIYAVRVLDNQGSGTLDAVA 224 +D D NGHGTH AG A T N G+ GVAP+ + ++VL+ QGSG D + Sbjct: 72 DDEGDPEIFKDYNGHGTHVAGTIAA-TENENGVVGVAPEADLLIIKVLNKQGSGQYDWII 130 Query: 225 QGIREAADSGAKVISLSLGAPNGGTALQQAVQYAWNKGSVIVAAAGNAGNTKAN-----Y 279 QGI A + +IS+SLG P L +AV+ A +++ AAGN G+ Y Sbjct: 131 QGIYYAIEQKVDIISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDELGY 190 Query: 280 PAYYNEVISVASTDQSDKKSSFSTYGSWVDVAAPGSNIYSTYKGSTYQSLSGTSMATPHV 339 P YNEVISV + + S FS + VD+ APG +I ST G Y + SGTSMATPHV Sbjct: 191 PGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMATPHV 250 Query: 340 AGVAAL-------LANQGYSNTQIRQIIESSSDKISGTGTYWKNGRVNAYKAVQYAKQLQ 392 AG AL + + ++ + + + + NG + + ++ Sbjct: 251 AGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLYLTAVEELSRIFD 310 Query: 393 ENKA 396 + Sbjct: 311 TQRV 314
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 51.1 bits (122), Expect = 1e-09 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 9/163 (5%) Query: 166 SFVRERLSGTLERLLSTPIKRWEIVVGYIIGFGIFAFIQSIIIVSFSVYILDLYVAGSIW 225 +F R T E +L T ++ +IV+G + A + I + + Y Sbjct: 90 AFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALG--YTQW--L 145 Query: 226 LTLLITCMLSLTAL---TLGTFLSAYANNEFQMIQFIPLVIVPQIFFSG-LFPIESMNKW 281 L +++LT L +LG ++A A + I + LVI P +F SG +FP++ + Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIV 205 Query: 282 LQMLGKLFPLTYGADAMRQVMIRNQGFTEIALDLTVLLFFSVL 324 Q + PL++ D +R +M+ + ++ + L + V+ Sbjct: 206 FQTAARFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVI 247
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 87.4 bits (216), Expect = 2e-23 Identities = 37/207 (17%), Positives = 80/207 (38%), Gaps = 14/207 (6%) Query: 16 DKRNERQMRILEAAVDMFGEKGYASTSTSEIAKRAGVAEGTIFRYYKTKKDLLLAVVMPT 75 + E + IL+ A+ +F ++G +STS EIAK AGV G I+ ++K K DL + + Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 76 LTKFAAPFFVQAFAKEIFESEYESYEGLLRVVIHNRFEFA---KKHFPMIKILIQEVPFQ 132 + E +LR ++ + E ++ +++I+ + F Sbjct: 67 ESNI------GELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 133 PELK--NEIQQLVETELLSHFKKLIEKFQEKGEIIEMPPVTVLRLTLSAVLGLLLTRFLL 190 E+ + Q+ + E ++ ++ E + + + + L+ +L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 191 LPEEKWNDEAEIENT-IQFILYGLTPR 216 P+ D + + +L Sbjct: 181 APQSF--DLKKEARDYVAILLEMYLLC 205
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 34.0 bits (78), Expect = 0.001 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 97 EEGIVFIGPSEEIITKMGSKIESRIAMQA--ADVPVVPGITTNIETAEEAIEIAKQIGYP 154 EGIV + P+EE + K + + A + P T + +E+A IG P Sbjct: 224 IEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKD----GAHVELAANIGTP 279 Query: 155 LMLKASAGGGGIGMQLMETE 174 + GG G+ L TE Sbjct: 280 KDVDGVLANGGEGIGLYRTE 299
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 1e-04 Identities = 13/30 (43%), Positives = 19/30 (63%) Query: 41 IVSEEAGTVMKINVQEGDFVNEGDVLLEIE 70 I E V +I V+EG+ V +GDVLL++ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 28.4 bits (63), Expect = 0.022 Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 87 LERAFLQNVDEVNVFLSASESHNKSNINKSIKEALVVIEDITKQALFEGKKVRGYVSTVF 146 L+ +F + + +V S +N+ E ++ +A F GY+ F Sbjct: 44 LDHSFERGLSQVTAEYRVRNDGGISVLNRGYSEEKGEWKEAEGKAYFVNGSTDGYLKVSF 103 Query: 147 GCPYEGDISVIAVD 160 P+ G V +D Sbjct: 104 FGPFYGSYVVFELD 117
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.002 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 61 HLHIDFLWVDDSVRHDGYGSQLLHKIEDIAKEKGCRLILLDSFSFQAP--EFYKKHGYRE 118 + I+ + V R G G+ LLHK + AKE ++L++ FY KH + Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148 Query: 119 YGV 121 V Sbjct: 149 GAV 151
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 34.4 bits (79), Expect = 3e-04 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 2 ETVIQKMKEIQSD---HVGIAIYSTKSNRIVASYNSEINIPLASAAKVVIGFVVAQMVKE 58 ++++K +S VG+ S R + ++ ++ P+ S KVV+ V V Sbjct: 23 PQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDA 82 Query: 59 NKRNWNDILH 68 +H Sbjct: 83 GDEQLERKIH 92
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.5 bits (97), Expect = 3e-07 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 52 IFVYELDNKVVGFATFGPFRAWPAYKYSIEHSIYVNKEYRNRGIGTSLMKELIAIARERE 111 F+Y L+N +G W Y IE I V K+YR +G+GT+L+ + I A+E Sbjct: 67 AFLYYLENNCIGRIKIR--SNWNGYAL-IED-IAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 112 YMTLIAGIDAENERSIALHENYGFVHAG 139 + L+ N + + + F+ Sbjct: 123 FCGLMLETQDINISACHFYAKHHFIIGA 150
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 145 bits (366), Expect = 3e-40 Identities = 92/406 (22%), Positives = 165/406 (40%), Gaps = 16/406 (3%) Query: 19 ILMASMDNTIVVTAMGTIVGDLGGLENFV-WVVSAYMVAEMAGMPIFGKLSDMYGRKRFF 77 + ++ ++ ++ I D WV +A+M+ G ++GKLSD G KR Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 78 IFGLIVFMIGSALCGTAENITQLGIY-RAIQGIGGGALVPIAFTIVFDIFPPEKRGKMGG 136 +FG+I+ GS + + L I R IQG G A + +V P E RGK G Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 137 LFGAVFGLSSIFGPLLGAYITDYISWHWVFYINLPLGILALIFITFFYKESRVHRKQKID 196 L G++ + GP +G I YI HW + + +P+ + + + V K D Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFD 200 Query: 197 WFGAITLVGAVVCLMFALELGGQKYDWDSSFILSLFGAFAILIVTFIFIERKVEEPIISF 256 G I + +V M L Y S + + F+ RKV +P + Sbjct: 201 IKGIILMSVGIVFFM----LFTTSYSI------SFLIVSVLSFLIFVKHIRKVTDPFVDP 250 Query: 257 EMFKQRLFGMSTIIALCYGAAFMSATVYIPLFIQGVYG-GTATNSGLLLLPMMLGSVVTA 315 + K F + + +P ++ V+ TA +++ P + ++ Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310 Query: 316 QLGGFLTTKLSYRNIMIISAVIMLIGLFLLSTLTPETSRALLTVYMIIIGFGVGFSFSVL 375 +GG L + ++ I + + FL ++ ET+ +T+ ++ + G+ F+ +V+ Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVI 369 Query: 376 SMAAIHNFGMEQRGSATSTSNFIRSLGMTLGITIFGMIQRTGFQDQ 421 S + ++ G+ S NF L GI I G + DQ Sbjct: 370 STIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.004 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Query: 12 LELTGISYGQLYRWKRKNLIPEDWFVRKSTFTGQETFFPKEKILERIDKIQTM 64 L+ + G KNL P D R T G +K+L KI ++ Sbjct: 97 LDKADAALGPA-----KNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSL 144
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 72.2 bits (177), Expect = 6e-16 Identities = 56/370 (15%), Positives = 133/370 (35%), Gaps = 23/370 (6%) Query: 6 LRYNKPIIIRMCGELLTRTTESMLAIIMIIYV------DKMLNGNIIITM-LIFGLQPLS 58 ++ N+P+I+ +L+ + I +I+ V D + + ++ ++ L L Sbjct: 1 MKPNRPLIV-----ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALM 55 Query: 59 DIVFTLIAGGITDKYGRKKIMLLGLLLQGVAIGSFIFAQSVFIFALLYVINGIGRSLYIP 118 + G ++D++GR+ ++L+ L V A +++ + ++ GI + Sbjct: 56 QFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGAT-GA 114 Query: 119 AQRAQIADLTKHGQQAEIFSLLQTMGAIGTLIGPLIGTIFYKTHPEYVFIVQSITLIAYA 178 A IAD+T ++A F + G + GP++G + P F + Sbjct: 115 VAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNF 174 Query: 179 VVVWTQLPETAPAMTTPTQKLEVSSPKQFVHKHY--AVFGLMITTIPISFFYAQTETNYL 236 + LPE+ P ++ ++ F V LM + ++ Sbjct: 175 LTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 237 IFVKHTLPDFDRILVFIT-TCKALMEITLQVFLV-KWSEQFSMAKIILIAYTCFTIAAIG 294 IF + +D + I+ ++ Q + + + + +++ G Sbjct: 235 IFGEDRF-HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLG---MIADGTG 290 Query: 295 YGFSATILS--LFFTLLFLVIGESVAFNHLLRFVSEIAPTNKRGLYFSIYGLHWDVSRTC 352 Y A + F ++ L+ + L +S ++G ++ Sbjct: 291 YILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIV 350 Query: 353 GPVIGAVLLS 362 GP++ + + Sbjct: 351 GPLLFTAIYA 360 Score = 42.9 bits (101), Expect = 1e-06 Identities = 22/137 (16%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Query: 30 AIIMIIYVDKMLNGNIIITMLIFGLQPLSDIVF-TLIAGGITDKYGRKKIMLLGLLLQGV 88 A + +I+ + + + + + + +I G + + G ++ ++LG++ G Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 89 AIGSFIFAQSVFIFALLYVINGIGRSLYIPAQRAQIADLTKHGQQAEIFSLLQTMGAIGT 148 FA ++ + V+ G + +PA +A ++ +Q ++ L + ++ + Sbjct: 290 GYILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTS 348 Query: 149 LIGPLIGTIFYKTHPEY 165 ++GPL+ T Y Sbjct: 349 IVGPLLFTAIYAASITT 365
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 29.2 bits (65), Expect = 0.016 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 17/101 (16%) Query: 34 PTTENSKNEQNNTSEEKKEPDEKSNNEGSTIPKPDPSTKDTVINQKSINHVKELFELAKE 93 P + S QNN +K+E + ++N P + Q Sbjct: 335 PNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQ--------------- 379 Query: 94 GKVPNVPFAAHTGDIEEIEKAWGKADKTEQAGNGMYATFTN 134 V + PFA + I + AD T + G + TN Sbjct: 380 --VIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTN 418
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 35.4 bits (81), Expect = 9e-06 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Query: 6 IVGGILGWLASLITGRDVPGGVIG-NIIAGIIGSWIGGKLLGSFGPVIG 53 V ++ L SL+ G G+ G I+ GI+ S+I L + V+G Sbjct: 475 GVSYVVALLFSLLAG--TTLGIWGIAIVTGILCSYIDKNKLNTINEVLG 521
>PF06776#Invasion associated locus B Length = 214 Score = 29.1 bits (65), Expect = 0.021 Identities = 15/61 (24%), Positives = 23/61 (37%) Query: 268 RATRNTLDISAVPILKKETHLPVVVDVTHSTGRRDLLLPTAKAALAIGADAVMAEVHPDP 327 R +R + AVP LK P + ++ RR A+ LA ++ D Sbjct: 10 RISRRPVTNHAVPALKAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIALSFGWSDR 69 Query: 328 A 328 A Sbjct: 70 A 70
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 24.7 bits (53), Expect = 0.020 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%) Query: 9 IMVREIISTIFQIYQRLFQYIDVSTKDVDLPTLFDMISSNKVK 51 + +IIS + I + D D D++ S K K Sbjct: 176 GISLDIISKDKSLDPEFLNLIKSLSDDSDSS---DLLFSQKFK 215
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 54.3 bits (130), Expect = 2e-10 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 14/126 (11%) Query: 214 LQELIGECRSNDIPVIYVQHNGPKDHPLEKG--TEGW-----------KIHKAIAPLEGD 260 +++L +C IPV+Y G + +P ++ T+ W KI +AP + D Sbjct: 60 IRKLKNQCVQLGIPVVYTAQPGSQ-NPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDD 118 Query: 261 CVVEKTTPDSFHKTDLKEVLQDKGIDHVIISGMQTQYCVDTTTRRAFSEGYKVTLVSDAH 320 V+ K +F +T+L E+++ +G D +II+G+ T AF E K V DA Sbjct: 119 LVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAV 178 Query: 321 STFDTE 326 + F E Sbjct: 179 ADFSLE 184
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.1 bits (158), Expect = 5e-13 Identities = 61/361 (16%), Positives = 117/361 (32%), Gaps = 36/361 (9%) Query: 185 QVAKVQKMVKAKEEAKTQKVTKAKETIKPKEEE--KVQEVV----KPKEEEKVQEVV--K 236 +V K + V + ++ EE +V E P + E V Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 237 PKEEEKVQEVVKPKEEEKIQEVAKPKEEAKVQEVAKPKEEEKVQEVAKPKEEEKVQEVVK 296 K+E K E + E + + +EAK A + EVA+ E K + + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT----NEVAQSGSETKETQTTE 1099 Query: 297 PKEEEKVQEVAKSKEEA-KVQEVAKPKEEAKVQEVVKPKEEAKVQEEAKAQEIAKAKEEA 355 KE V++ K+K E K QEV K + ++ + + E A+ + +E Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQ-EQSETVQPQAEPARENDPTVNIKEP 1158 Query: 356 KAQEIAKAKEEEKAREIAKAKEEA----KAQEIAKAKEEAKAQEIAKAKEEAKAQEIAKA 411 ++Q A E+ A+E + E+ + E + E + Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK 1218 Query: 412 KEEEKAREIAK--AKEEAKAQEIAKAKEEAKAREIAKAKEEAKAREAIKAKEESKNNTQS 469 + R + E A + + KA+ + N ++ Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKA 1278 Query: 470 AKRELTVVATA-------YTADPSENGTYGG---------RVLTAMGHDLTANPNMRIIA 513 + ++ + + ++ S N Y T +G D T + N+++ Sbjct: 1279 VSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQTQLGWDQTISNNVQLGG 1338 Query: 514 V 514 V Sbjct: 1339 V 1339 Score = 60.1 bits (145), Expect = 2e-11 Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 5/222 (2%) Query: 273 PKEEEKVQEV-AKPKEEEKVQEVVKPKEEEKVQEVAKSKE--EAKVQEVAKPKEEAKVQE 329 P+ E++ Q V + P +E+A+ E + V E Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 330 VVKPKEEAKVQEEAKAQEIAKAKEEAKAQEIAKAKEEEKAREIAKAKEEAKAQEIAKAKE 389 K + + + E A E E + + K + E+A++ E K + + KE Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 390 EAKAQEIAKAKEEA-KAQEIAKAKEEEKAREIAKAKEEAKAQEIAKAKEEAKAREIAKAK 448 A ++ KAK E K QE+ K + ++ +++ E A+ + + +++ Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQ-EQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 449 EEAKAREAIKAKEESKNNTQSAKRELTVVATAYTADPSENGT 490 A AKE S N Q TV + EN T Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Score = 58.2 bits (140), Expect = 7e-11 Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 12/254 (4%) Query: 158 KGKTAYVNVSFLSSTAPVEKKADEKTKQVAKVQ----KMVKAKEEAKTQKVTKAKETIKP 213 + KT N + T ++ ++ K K ++ ++ E K + T+ KET Sbjct: 1047 ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATV 1106 Query: 214 KEEEKVQ-EVVKPKEEEKVQEVVKPKEEEKVQEVVKPKEEEKIQEVAKPKEEAKVQEVAK 272 ++EEK + E K +E KV V PK+E+ E V+P+ E + + + Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVSPKQEQS--ETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 273 PKEEEKVQEVAKPKEEEKVQEVVKPKEEEKVQEVAKSKEEAKVQEVAKPKEEAKVQEVVK 332 + E+ + E+ V E V E ++ A Q P ++ K Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ----PTVNSESSNKPK 1220 Query: 333 PKEEAKVQEEAKAQEIAKAKEEAKAQEIAKAKEEEKAREIAKAKEEAKAQEIAKAKEEAK 392 + V+ E A +A + AKAQ +A +A Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSN-DRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279 Query: 393 AQEIAKAKEEAKAQ 406 +Q I++ + + Q Sbjct: 1280 SQHISQLEMNNEGQ 1293
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 35.6 bits (82), Expect = 3e-04 Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 1/151 (0%) Query: 126 EQFNHLLMYYRTYGIQISINKVGTGTSN-LERISVLAPDILKVDLTNLRQTALLQSYQDI 184 + + +K+ TG S L +DL+ +++ +D+ Sbjct: 179 DMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDL 238 Query: 185 LYSLSLLARRIGATLLYEEIDAFYQLQYAWKNGGRYYQGNYLKECLPDFIETNVLKERLG 244 + FY L K + Q + + L +F +RL Sbjct: 239 FKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLK 298 Query: 245 NECHQFIQHEKKKLQKIYNLTEMLRDRIGDV 275 ++ + + + ++L + + Sbjct: 299 SKSSDLQKIVMNNINRCTKKDKILNNTLKKC 329
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (262), Expect = 2e-29 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 15/256 (5%) Query: 4 KVVIVTGGSSGMGKGMATRFAKEGARVVITGRTKEKLE--ETKLEIEQFPGQILPVQMDV 61 K+ +TG + G+G+ +A A +GA + EKLE + L+ E + P DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP--ADV 66 Query: 62 RNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQA 121 R++ I ++ +I+ + G IDIL+N A LS W + ++ G F S++ Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 122 VGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNA 181 V KY +++ G+I+ + + A + A++KA + TK L +E +Y IR N Sbjct: 127 VSKYMMDRR-SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA-EYNIRCNI 184 Query: 182 IAPGPIERTGGADKLWISEEMAKRTIQ--------SVPLGRLGTPEEIAGLAYYLCSDEA 233 ++PG T LW E A++ I+ +PL +L P +IA +L S +A Sbjct: 185 VSPGST-ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 234 AYINGTCMTMDGGQHL 249 +I + +DGG L Sbjct: 244 GHITMHNLCVDGGATL 259
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 25.9 bits (57), Expect = 0.027 Identities = 6/39 (15%), Positives = 8/39 (20%) Query: 40 FFPFFGVPFLAGIAGGLLGGALAFGPRPYYPPYPPPFPP 78 P + L + F P P P Sbjct: 29 TAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.7 bits (61), Expect = 0.047 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%) Query: 26 PEEELYVAFENAAKQEKTMFEDAKKLETLEKEGQELYNQIVQEGKDNNQTVK-EKLNQAV 84 P E EN+ ++ KT+ ++ + + +E+ + K N QT + + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 85 KNTDEREKVLKKEKESLNKAQEEVKSVDKYVKKIEDKKLK 124 K T E E KA+ E + + K K Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.4 bits (68), Expect = 7e-04 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Query: 15 ADPTRRKILD----LLKEG---DLTAGEIAEHFNMTKPSISHH 50 A TR+ ILD L + + GEIA+ +T+ +I H Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWH 51
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 4e-19 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 3 KILIVEDDPNISSLLQSHIQKYGYDAVVTENFDDIMESFNTVKPHLVLLDVNLPKFDGFY 62 IL+ +DD I ++L + + GYD +T N + LV+ DV +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 WCRQIR-HESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRR 118 +I+ P++ +SA+ M I A E GA DY+ KPF ++ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 42.2 bits (99), Expect = 2e-06 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 23/113 (20%) Query: 216 DAKWLKFIIYQLMTNAVRY---SGERGKKVFLSAYRNGKDIILEVRDEGVGIPQEDIRRV 272 D + ++ L+ N +++ +G K+ L ++ + LEV + G + Sbjct: 252 DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT---- 307 Query: 273 FEPFYTGKNGRTFGESTGMGLYIVSK-ICDYLG--HSVKLDSEVGKGTTIKII 322 ESTG GL V + + G +KL + GK + +I Sbjct: 308 -------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.1 bits (67), Expect = 0.035 Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 346 KQKFNEEQFTYKQFKTDIYEVSSAEENSQLYYAIKQSDYNVLAKALNWETLTV 398 K+ N +++ + +YE ++EN+++ Y K+ VL + NW + V Sbjct: 424 KEIDNGKKYYLLESNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEV 476
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.9 bits (137), Expect = 2e-12 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 11/172 (6%) Query: 7 AEARREQIILACIDTLEEVGYNNLSLTKVAKKAKISTGLISYHFNDKLYLMNRTLQFLVE 66 A+ R+ I+ + + G ++ SL ++AK A ++ G I +HF DK L + + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 67 KQHEFISNRVLLAQSEINKLEAFIEA-----HLAYQETHCKNNIALIEIVF-NARNEENI 120 E A+ + L E E + L+EI+F + Sbjct: 69 NIGELE--LEYQAKFPGDPLSVLREILIHVLESTVTEERRR---LLMEIIFHKCEFVGEM 123 Query: 121 PYYRIEDDEEDDALRTMLLNILKTGQQNGVFSNSFQADTLASFILGAIEERM 172 + + LK + + A + G I M Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.5 bits (69), Expect = 0.004 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 1 MKIGIIGATGKAGSRILKEALDRGHEVTAIVRNAA----KITEENVKVLEKDVFSLTSND 56 MK + GA G G + K L+ GH+V I + + +++L + F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 LQAFDVVVNAF 67 L + + + F Sbjct: 61 LADREGMTDLF 71
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 29.8 bits (67), Expect = 0.006 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 16/85 (18%) Query: 92 TTLAAYEESLKKLELDYLDLYL----VHWPVEGK-YKDTWRALETLYKE---------ER 137 T E SL ++ LY HW V+G + E LY ER Sbjct: 8 TNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAER 67 Query: 138 VRAIGVSNFQIHHLQDVMKDAEIKP 162 + AIG +++ + A I Sbjct: 68 LLAIGGQPVAT--VKEYTEHASITD 90
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 67.2 bits (164), Expect = 2e-14 Identities = 74/336 (22%), Positives = 130/336 (38%), Gaps = 20/336 (5%) Query: 1 MQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISEDLHVSVTTA---GLTVSLYALGV 57 M+ NR + L +A+ A GIG + + +LP + DL S G+ ++LYAL Sbjct: 1 MKPNRPLIVILSTVALDAVGIG----LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQ 56 Query: 58 AFGAPVLTSVTASMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARVVSAFAHGVFMSI 117 APVL +++ R+ +L+ + + I A A VL I R+V+ Sbjct: 57 FACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVA 116 Query: 118 GSTIAAALVPENKRASAIAFMFTGLTVATITGVPIGTFIGQQFGWRASFMVIVAIGIVAL 177 G+ I A + ++RA FM + G +G +G F A F A+ + Sbjct: 117 GAYI-ADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG-GFSPHAPFFAAAALNGLNF 174 Query: 178 IANSMLIPSNLKKGTSVSFRDQFNLITNGRLLLVFIITALGYGGTF-------VTFTYLS 230 + L+P + K R+ N + + R + A F V Sbjct: 175 LTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 231 PLLQEVTGFKASTVTIILLVYGIAIAIGN-MVGGKLSNH-NPIRALFYMFFIQAIVLFVL 288 ++ + A+T+ I L +GI ++ M+ G ++ RAL +L Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL 294 Query: 289 TFTAPFQVAGFITIIFMGLFAFMNVPGLQVYVVILA 324 F +A F ++ + + +P LQ + Sbjct: 295 AFATRGWMA-FPIMVLLASGG-IGMPALQAMLSRQV 328
>PF07472#Fucose-binding lectin II Length = 245 Score = 27.7 bits (61), Expect = 0.017 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 15 VQISASQGQLDVLDQLLKPEVQESLTTLVEQLPKLTELVNILTKSYDFAQTVATDEVLKS 74 VQ + Q LD + Q + T LVE+LP+ V+I T Y F ++V K+ Sbjct: 24 VQANGDQAVLDRMRQFMT-------TQLVEKLPQYDVFVDIATIPYSFDVGSWQNKV-KA 75 Query: 75 DTVGAI 80 D G + Sbjct: 76 DAAGQV 81
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 29.6 bits (66), Expect = 0.028 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 333 DEIEQGFKEMPTFQSSKETKNIVEWLVDLGIEPSRRQAREDINNGAISMN---------- 382 D I+ KEMP + KE K + + S E+IN+ S+N Sbjct: 77 DMIKLAPKEMPLESAEKEEKKSED------NKKSEEDHTEEINDKIYSLNYNELEVLAKN 130 Query: 383 GEKVTDVGTDVTVENSFDGRFIIIRKGKKNYS 414 GE + + +FI+I + KKN + Sbjct: 131 GETIENF--VPKEGVKKADKFIVIERKKKNIN 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 4e-22 Identities = 41/215 (19%), Positives = 85/215 (39%), Gaps = 23/215 (10%) Query: 2 KIKVLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALIKVGETNPDVVLMDLYMPEM 61 +L+ DD + L L ++ ++ SN + + D+V+ D+ MP+ Sbjct: 3 GATILVADDDAAIRTVLNQAL-SRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGVEATACIKKEYPDVKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAIRSAYK 121 + + IKK PD+ V+V+++ + + A GA Y+ K + +L+ I Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG---- 116 Query: 122 GNIQLHPDIANALLSQTLPVEEKEEEPSIQVDVL--TARENEVLQLLAKGMSNKEIASVL 179 AL + E++ + ++ +A E+ ++LA+ M +++ Sbjct: 117 ----------RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD--LTLM 164 Query: 180 VITEK-TVKAHVSSILSKLNLSDRTQAALYAVKNG 213 + E T K V+ L + R A+ Sbjct: 165 ITGESGTGKELVARALH--DYGKRRNGPFVAINMA 197
>PF06580#Sensor histidine kinase Length = 349 Score = 33.3 bits (76), Expect = 0.002 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Query: 447 NVSKHA---NVREATIYFKVTEKNVSLEIVDQGNGFVE-KDIKEKKSLGMTTMRERVELI 502 N KH + I K T+ N ++ + + G + K+ KE G+ +RER++++ Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQML 325 Query: 503 GG---TIKVVSDKKRTSVKVNVP 522 G IK+ + + + V +P Sbjct: 326 YGTEAQIKLSEKQGKVNAMVLIP 348
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 7e-14 Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 2 KEKERLIIEMAMKLFATKGVNATSVQEIVTACGISKGAFYLYFKSKEELLLATLRYYYDK 61 +E + I+++A++LF+ +GV++TS+ EI A G+++GA Y +FK K +L Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 62 IQ 63 I Sbjct: 70 IG 71
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 668 bits (1725), Expect = 0.0 Identities = 246/1064 (23%), Positives = 465/1064 (43%), Gaps = 63/1064 (5%) Query: 4 IINFSLKNKFAVWLLTIIVTIAGIYSGLNMKLETIPDITTPVVTVTTVYPGATPEEVADK 63 + NF ++ W+L II+ +AG + L + + P I P V+V+ YPGA + V D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 VSKPMEEQLQNLSGVNVVSSSSFQNASS-IQVEYDFDKNMEKAETEIKEALANVK--LPE 120 V++ +E+ + + + +SS+S S I + + + + A+ +++ L LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 GVKDPKVSRVNF--NAFPVISLSVASKNESLATLTENVEKNVVPGLKGLDGVASVQISGQ 178 V+ +S + V + + +++ V NV L L+GV VQ+ G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 179 QVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVDGNI---TT 235 Q +++ D + + L+ V N +K + + G ++ +I T Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 236 MKALKELKIPAVPSSASGQGSQNAGAGTQVPQMNPAAMNNGISTVTLDEIADIKEVGKA- 294 K +E + ++ G S V L ++A ++ G+ Sbjct: 240 FKNPEEFGKVTLRVNSDG------------------------SVVRLKDVARVELGGENY 275 Query: 295 ESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAPIEK 353 I+R NGK A G+ I A AN +D A+K K+ EL+ + + ++++ +D ++ Sbjct: 276 NVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQL 335 Query: 354 SVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNIMTL 413 S+ ++ + +++ LFL+N+R TLI +++P+ LL ++ ++N +T+ Sbjct: 336 SIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTM 395 Query: 414 GAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPIMSSTIVTIAVF 473 M +AIG +VDD+IVV+EN+ R M +KL K+ ++ ++ ++ +V AVF Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVM--MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 474 LPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHH---- 529 +P+ G G ++ F++TIV A+ S+LVA+ + P L +L K S E Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFG 513 Query: 530 --EEKPSKLANIYKHILAWALNHKIITSSIAILLLVGSLALVPIIGVSFLPSEEEKMIIA 587 N Y + + L I L++ G + L + SFLP E++ + + Sbjct: 514 WFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLT 573 Query: 588 TYNPEPGQTLEDVEKIATKAEKHFQDN--KNVKTIQFSLGGENPMSPGQSNQAMFFVQYD 645 G T E +K+ + ++ N NV+++ F++ G + Q N M FV Sbjct: 574 MIQLPAGATQERTQKVLDQVTDYYLKNEKANVESV-FTVNGFSFSGQAQ-NAGMAFVSLK 631 Query: 646 --NDTKNFEKEKEQVVKDLQKMSGKGEWKN---------QDFGASGGSNEIKLYVYGDSS 694 + E E V+ + GK + G + G + + G Sbjct: 632 PWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGH 691 Query: 695 EDIKPVVKDIQNIMKKN-KDLKDIDSSIAKTYAEYTLVADQEKLSKMGLTAAQIGMGLSN 753 + + + + ++ L + + + A++ L DQEK +G++ + I +S Sbjct: 692 DALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTIST 751 Query: 754 QHDRPVLTTIKKDGKDINVYVEAEKQNYETIDDLTNRKITTPLGNEVAVKDVMTVKEGET 813 + G+ +YV+A+ + +D+ + + G V T Sbjct: 752 ALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYG 811 Query: 814 SNTVKHRDGRVYAEVSAKLTSDDVSK-ASAAVQKEVDKMDLPSGVDVSMGGVTKDIEESF 872 S ++ +G E+ + S A A ++ K LP+G+ G++ S Sbjct: 812 SPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASK--LPAGIGYDWTGMSYQERLSG 869 Query: 873 KQLGLAMLAAIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVALLISGETLSVSAMIG 932 Q + + +V+ L + P +++ +P I+G L+A + + V M+G Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929 Query: 933 ALMLIGIVVTNAIVLIDRVIH-KENEGLSTREALLEAGATRLRPILMTAIATIGALIPLA 991 L IG+ NAI++++ E EG EA L A RLRPILMT++A I ++PLA Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 992 LGFEGSGLISKGLGVTVIGGLTSSTLLTLLIVPIVYEVLSKFKK 1035 + +G+ V+GG+ S+TLL + VP+ + V+ + K Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 95.3 bits (237), Expect = 7e-22 Identities = 95/518 (18%), Positives = 199/518 (38%), Gaps = 46/518 (8%) Query: 547 ALNHKIITSSIAILLLVGSLALVPIIGVSFLPSEEEKM--IIATYNPEPGQTLEDVE-KI 603 + I +AI+L++ + + V+ P+ + A Y PG + V+ + Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANY---PGADAQTVQDTV 61 Query: 604 ATKAEKHFQDNKNVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDTKNFEKEKEQVVKDLQ 663 E++ N+ + S S ++ + + + QV LQ Sbjct: 62 TQVIEQNMNGIDNLMYMS---------STSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112 Query: 664 KMSGK--GEWKNQDFGASGGSNEIKLYVYGDSSEDIKPVVKDIQNIMKKN--KDLKDID- 718 + E + Q S+ L V G S++ DI + + N L ++ Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSY-LMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNG 171 Query: 719 ----SSIAKTYAEYTLVADQEKLSKMGLTAAQIGMGLSNQHDR----PVLTTIKKDGKDI 770 YA + D + L+K LT + L Q+D+ + T G+ + Sbjct: 172 VGDVQLFGAQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQL 230 Query: 771 NVYVEAEKQNYETIDDLTNRKI-TTPLGNEVAVKDVMTVKEG--ETSNTVKHRDGRVYAE 827 N + A + ++ ++ + G+ V +KDV V+ G + + Sbjct: 231 NASIIA-QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGL 289 Query: 828 VSAKLTSDDVSKASAAVQKEVDKM--DLPSGVDVSMGGVTKD----IEESFKQLGLAMLA 881 T + + A++ ++ ++ P G+ V D ++ S ++ + Sbjct: 290 GIKLATGANALDTAKAIKAKLAELQPFFPQGMKVL---YPYDTTPFVQLSIHEVVKTLFE 346 Query: 882 AIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVALLISGETLSVSAMIGALMLIGIVV 941 AI +V+ V+ + A ++P ++G L G +++ M G ++ IG++V Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 942 TNAIVLIDRVI-HKENEGLSTREALLEAGATRLRPILMTAIATIGALIPLALGFEGS-GL 999 +AIV+++ V + L +EA ++ + ++ A+ IP+A F GS G Sbjct: 407 DDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF-FGGSTGA 465 Query: 1000 ISKGLGVTVIGGLTSSTLLTLLIVPIVYEVLSKFKKKK 1037 I + +T++ + S L+ L++ P + L K + Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAE 503
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.6 bits (160), Expect = 2e-14 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 3 KVLVVDDEMLARDELKYLLERTK-EVEIIGEADCVEDALEELMKNKPDIVFLDIQLSDDN 61 +LV DD+ R L L R +V I A + D+V D+ + D+N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNA---ATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GFEIANILKKMKNPPAIVFATAYDQY--ALQAFEVDALDYILKPFDEERIVQTLKKYKKQ 119 F++ +KK + ++ +A + + A++A E A DY+ KPFD ++ + + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 120 KQSQIETKQE 129 + + ++ Sbjct: 122 PKRRPSKLED 131
>PF06580#Sensor histidine kinase Length = 349 Score = 228 bits (582), Expect = 1e-71 Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 13/216 (6%) Query: 359 QLELGEAELQSKLLQDAEIKALQAQINPHFLFNAINTVSALCRTDVEKARKLLLQLSVYF 418 Q E+ + ++ + Q+A++ AL+AQINPHF+FNA+N + AL D KAR++L LS Sbjct: 146 QAEIDQWKMA-SMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELM 204 Query: 419 RCNLQGARQLLIPLEQELNHVHAYLSLEQARFPNKYEVKMYMEDELKTTLVPPFVLQLLV 478 R +L+ + + L EL V +YL L +F ++ + + + + VPP ++Q LV Sbjct: 205 RYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLV 264 Query: 479 ENALRHAFPKKQPVCEVEVHVFEKEGMVHFEVKDNGQGIEEERLEQLGKMVVSSKKGTGT 538 EN ++H + ++ + + G V EV++ G + +K+ TGT Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN-----------TKESTGT 313 Query: 539 ALYNINERLIGLFGKETMLHIESKLNEGTEITFVIP 574 L N+ ERL L+G E + + K + +IP Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVNA-MVLIP 348
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 56.0 bits (135), Expect = 1e-10 Identities = 81/411 (19%), Positives = 148/411 (36%), Gaps = 28/411 (6%) Query: 34 LDMLLLSFVLVYILKEFHLSPVEGGNLTLATTIGMLIGSYLFGFIADLFGRIRTMAFTIL 93 L+ ++L+ L I +F+ P + A + IG+ ++G ++D G R + F I+ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 94 LFSLATALIYFATDYWQLLIL-RFLVGMGVGGEFGIGMAIVTETWSKEMRAKATSVVALG 152 + + + + ++ LLI+ RF+ G G + M +V KE R KA ++ Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 153 WQFGVLVASLLPAFIVPHFGWRAVFLFGLIPALLAVYVRKSLSEPKIWEQKQRYKKELLQ 212 G V + I + W + L +I + ++ K L + + K +L Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILM 207 Query: 213 KE--VEGSLTTTEA-----------------EQLKQMKKFPLRKLFANKKVTVTTIGLII 253 V L TT K F L N + ++ Sbjct: 208 SVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMI----GVL 263 Query: 254 MSFIQNFGYYGIFTWMPTILANKYNYTLAKA-SGWMFISTIGMLIGIAIFGILADKIGRR 312 I G + +P ++ + + + A+ S +F T+ ++I I GIL D+ G Sbjct: 264 CGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPL 323 Query: 313 QTFTIYYVGGTIYCLIY-FFLFTNPTLLLWG-SALLGFFANGMMGGFGAILAENYPAEAR 370 I ++ L F L T + +LG + + + EA Sbjct: 324 YVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAG 383 Query: 371 STAENFIFGTGRGLAGFGPVIIGLLAAGGNLMGALSLIFIIYPIGLITMLL 421 + F + G G I+G L + L L + + L + LL Sbjct: 384 AGMSLLNFTSFLS-EGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLL 433
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.3 bits (84), Expect = 1e-04 Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 6 KVLVLGGTRFFGKHLVEALLQDGHDV 31 K LV G F G H+ + LL+ GH V Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQV 27
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 58.1 bits (140), Expect = 2e-11 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 40/179 (22%) Query: 85 SEADSEAGTGSG-VIYKKTDGQAYIVTNNHVVAGANRIEVSLS------------DGKKV 131 EA + SG V+ K T ++TN HVV + +L +G Sbjct: 95 VEAPTGTFIASGVVVGKDT-----LLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFT 149 Query: 132 PGKVLGTDVVTDLAVLEIDA----KHVKKVIE---IGDSNTVRRGEPVIAIGNPLGLQFS 184 ++ DLA+++ KH+ +V++ + ++ + + + G P + Sbjct: 150 AEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVA 209 Query: 185 GTVTQGIISANERIVPVDLDQDGHYDWQVEVLQTDAAINPGNSGGALVNAAGQLIGINS 243 T + E +Q D + GNSG + N ++IGI+ Sbjct: 210 ---TMWESKGKITYLKG------------EAMQYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 1e-04 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 25/104 (24%) Query: 502 VLYNIISNALKY----SPEGGTVTYRLRDRGELLEISVSDQGMGIPKENVDKIFERFYRV 557 ++ ++ N +K+ P+GG + + + + V + G K Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------ 306 Query: 558 DKARSRQMGGTGLGLAIAKEMIEAHGG---SIWAKSEEGKGTTI 598 TG GL +E ++ G I ++GK + Sbjct: 307 ------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.9 bits (236), Expect = 1e-24 Identities = 31/140 (22%), Positives = 69/140 (49%), Gaps = 4/140 (2%) Query: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGK 60 M G ILV DD+ I +L L + G+++ + + D+V+ D+++P + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFS---TRELLARVKA 116 + ++ I+K ++P+++++A+++ + + E GA DY+ KPF ++ R A Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 117 NLRRHQQGGAAEKEENTEMV 136 +R + ++ +V Sbjct: 121 EPKRRPSKLEDDSQDGMPLV 140
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 27.9 bits (62), Expect = 0.041 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 152 DREAFKEKLERNLAQKNRLFEK-------MYDTEGFSVEEIFEEYFEY 192 ++ + L L+ L+ K + F++ E FEE +++ Sbjct: 9 NQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDH 56