>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.036 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 2/97 (2%) Query: 69 GIAPALSLLIGSRRSSAPRAAPNAPVSAAVA--ASLAQTQAHKTAPAAAVEPVAVAAAEP 126 A LL S AP P+S + A L QA + P VEP P Sbjct: 25 HGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIP 84 Query: 127 VLVETSSRDSFDAMAEPAAAPPSGGRAEQRTVQVEGA 163 + + +P P + EQ V+ Sbjct: 85 EPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPV 121
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.035 Identities = 7/17 (41%), Positives = 13/17 (76%) Query: 52 LLIQGPSGVGKSTLVKE 68 ++++G G+GKSTL+ Sbjct: 599 VVLEGTGGIGKSTLINT 615
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 31.1 bits (70), Expect = 0.007 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 319 EVGLRLRYEIVRQFAPYIGVTWSRSYGKTADFIR 352 + L L Y + F PYIGV WSR+ AD IR Sbjct: 272 QASLALSYRL-NMFTPYIGVKWSRA-SFDADTIR 303
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 43.2 bits (101), Expect = 4e-06 Identities = 32/115 (27%), Positives = 41/115 (35%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S S G D + G AG + AG A + G S AG + S + Sbjct: 870 STSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLI 929 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG A + MAG A S AG +M G D S +A G+ Q Sbjct: 930 AGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQ 984 Score = 42.8 bits (100), Expect = 5e-06 Identities = 32/113 (28%), Positives = 40/113 (35%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S S G + + G A + MAG A S AG SMAG D S + Sbjct: 918 STSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLI 977 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 497 AG AG + AG A + AG G D S +A G+ Sbjct: 978 AGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGS 1030 Score = 40.5 bits (94), Expect = 2e-05 Identities = 33/115 (28%), Positives = 39/115 (33%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S G D + G AG + S+MAG AG AG D S + Sbjct: 198 STGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLI 257 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG AG D S AG A AG G D S +A G+ Q Sbjct: 258 AGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQ 312 Score = 40.5 bits (94), Expect = 2e-05 Identities = 29/102 (28%), Positives = 36/102 (35%) Query: 398 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 457 G S AG + S +AG A + MAG A S AG SMAG D Sbjct: 915 GYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDS 974 Query: 458 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 S +AG AG + AG + A G+ Sbjct: 975 SLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTA 1016 Score = 40.1 bits (93), Expect = 3e-05 Identities = 31/109 (28%), Positives = 38/109 (34%) Query: 398 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 457 G A + G S AG + S +AG A + MAG A Sbjct: 899 GYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQS 958 Query: 458 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQNHPASET 506 S AG SMAG D S +AG G + A G+ Q S T Sbjct: 959 SLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSST 1007 Score = 39.7 bits (92), Expect = 4e-05 Identities = 31/113 (27%), Positives = 39/113 (34%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S M G A S AG SMAG D S +AG AG + Sbjct: 934 STQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLT 993 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 497 AG A + AG + AG D S +AG +G+ A G+ Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGS 1046 Score = 39.4 bits (91), Expect = 5e-05 Identities = 28/101 (27%), Positives = 39/101 (38%) Query: 397 GGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMD 456 G SMAG D S +AG AG + AG A + AG + AG D Sbjct: 962 AGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGAD 1021 Query: 457 HSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 497 S +AG +G+ AG ++G+ A G+ Sbjct: 1022 SSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGS 1062 Score = 39.4 bits (91), Expect = 6e-05 Identities = 31/115 (26%), Positives = 37/115 (32%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S G + M G AG AG D S +AG AG D S Sbjct: 214 STQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLT 273 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG A AG AG D S +AG G + + A G+ Q Sbjct: 274 AGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQ 328 Score = 39.0 bits (90), Expect = 7e-05 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 1/98 (1%) Query: 398 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 457 G S AG D S +AG AG + AG A + G S AG + Sbjct: 867 GYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYES 926 Query: 458 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 495 S +AG A + MAG + T +QS++ A Sbjct: 927 SLIAGYGSTQTASFKSTLMAGYG-SSQTAREQSSLTAG 963 Score = 38.6 bits (89), Expect = 8e-05 Identities = 32/115 (27%), Positives = 39/115 (33%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S G D + G AG D S AG A AG AG D S + Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLI 305 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG AG + ++ AG A AG G D S +A G+ Q Sbjct: 306 AGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 360 Score = 38.6 bits (89), Expect = 9e-05 Identities = 32/115 (27%), Positives = 38/115 (33%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S G D G A AG AG D S +AG AG + ++ Sbjct: 262 STQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQT 321 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG A AG AG D S +AG G D S A G+ Q Sbjct: 322 AGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 376 Score = 37.4 bits (86), Expect = 2e-04 Identities = 29/115 (25%), Positives = 42/115 (36%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S S G D + G AG + AG A + AG + AG D S + Sbjct: 966 STSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLI 1025 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG +G+ AG ++G+ AG ++G S A G+ Q Sbjct: 1026 AGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQ 1080 Score = 37.4 bits (86), Expect = 2e-04 Identities = 28/115 (24%), Positives = 37/115 (32%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S G + G A + G S AG D S +AG AG + Sbjct: 838 STQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILT 897 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG A + G S AG + S +AG + MA G+ Q Sbjct: 898 AGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQ 952 Score = 37.0 bits (85), Expect = 3e-04 Identities = 29/115 (25%), Positives = 39/115 (33%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S S G D + G AG + AG A + G S AG D S + Sbjct: 822 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLI 881 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG AG + AG A + G + G + S +A G+ Q Sbjct: 882 AGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQ 936 Score = 36.7 bits (84), Expect = 3e-04 Identities = 29/95 (30%), Positives = 37/95 (38%) Query: 405 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 464 AG + +AG AG D + +AG AG + S+MAG AG Sbjct: 186 AGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYG 245 Query: 465 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG D S +AG G D S A G+ Q Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 280 Score = 36.3 bits (83), Expect = 4e-04 Identities = 26/104 (25%), Positives = 36/104 (34%) Query: 390 GMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDH 449 G MAG S+ A AG + MAG D +AG ++ AG Sbjct: 931 GYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQS 990 Query: 450 GSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMA 493 AG ++ A AG + AG D + G S + Sbjct: 991 TLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTS 1034 Score = 36.3 bits (83), Expect = 5e-04 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 398 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 457 G S AG D S +AG AG + AG A + G S AG D Sbjct: 819 GYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDS 878 Query: 458 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAA 494 S +AG AG + AG T + S++ Sbjct: 879 SLIAGYGSTQTAGYNSILTAGYG-STQTAQENSDLTT 914 Score = 35.5 bits (81), Expect = 9e-04 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 10/123 (8%) Query: 387 SDMGMDHGSMG--GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S + +GS G D +AG ++ AG + AG ++ A AG + Sbjct: 622 SVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTST 681 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMA--------GMDHGNMTGMDQSNMAASG 496 AG D +AG ++ AG + AG ++ A G + G D S +A G Sbjct: 682 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYG 741 Query: 497 AMQ 499 + Q Sbjct: 742 STQ 744 Score = 35.1 bits (80), Expect = 0.001 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 387 SDMGMDHGSMG--GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMA--------GMDHGSM 436 SD+ +GS G G D +AG ++ A AG ++ A G S Sbjct: 574 SDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTST 633 Query: 437 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASG 496 AG D S +AG AG + AG A AG + G D S +A G Sbjct: 634 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYG 693 Query: 497 AMQ 499 + Q Sbjct: 694 STQ 696 Score = 34.7 bits (79), Expect = 0.001 Identities = 30/115 (26%), Positives = 37/115 (32%) Query: 385 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S S G D + G AG + AG A +G S AG D S + Sbjct: 678 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLI 737 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 AG A S AG A G + G D S +A G+ Q Sbjct: 738 AGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQ 792 Score = 34.7 bits (79), Expect = 0.002 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 387 SDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S + +GS H S +AG + +++ G +AG S+ AG ++G D +M Sbjct: 1070 SSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQM 1129 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGM-------DHSKMAGMDHGNMTGMDQSNMAA 494 AG +AG D ++ AG +AG D SK+ + + D+S + A Sbjct: 1130 AGERGKLIAGADSTQTAGDRSKLLAGNNSYLTAGDRSKLTAGNDCILMAGDRSKLTA 1186 Score = 34.3 bits (78), Expect = 0.002 Identities = 25/93 (26%), Positives = 38/93 (40%) Query: 405 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 464 AG + AG D +AG ++ AG D AG ++ A AG + AG D Sbjct: 242 AGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGAD 301 Query: 465 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 497 +AG ++ AG + G + A G+ Sbjct: 302 SSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGS 334 Score = 34.3 bits (78), Expect = 0.002 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 387 SDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 444 S + +GS GS AG + AG D +AG ++ AG + AG ++ Sbjct: 270 SSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQT 329 Query: 445 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 497 A AG + AG D +AG ++ AG D G + A G+ Sbjct: 330 AQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS 382 Score = 34.0 bits (77), Expect = 0.002 Identities = 25/94 (26%), Positives = 39/94 (41%) Query: 404 MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGM 463 +AG + AG D +AG ++ AG + MAG ++ AG + AG Sbjct: 193 IAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGD 252 Query: 464 DHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 497 D +AG ++ AG D G + A G+ Sbjct: 253 DSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS 286 Score = 34.0 bits (77), Expect = 0.003 Identities = 25/87 (28%), Positives = 29/87 (33%) Query: 413 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMD 472 +G S AG D S +AG A S AG A G S AG D Sbjct: 722 SGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGAD 781 Query: 473 HSKMAGMDHGNMTGMDQSNMAASGAMQ 499 S +AG G A G+ Q Sbjct: 782 SSLIAGYGSTQTAGYHSILTAGYGSTQ 808 Score = 34.0 bits (77), Expect = 0.003 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 392 DHGS--MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDH 449 +H S G + AG D S +AG +G+ AG ++G+ AG Sbjct: 1003 EHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGS 1062 Query: 450 GSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 ++G S AG +A S +AG + +TG +A G+ Q Sbjct: 1063 SLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQ 1112 Score = 32.8 bits (74), Expect = 0.005 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 405 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 464 AG ++ A AG + AG D +AG S +G+ AG + ++G+ Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLR 1053 Query: 465 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 495 AG S ++G ++T SN AS Sbjct: 1054 SVLTAGYGSSLISGR-RSSLTAGYGSNQIAS 1083 Score = 32.4 bits (73), Expect = 0.007 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 385 SMSDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHS 442 S + +GS S G + AG D +AG ++ AG + AG + Sbjct: 604 YHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGST 663 Query: 443 KMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 497 + A AG + AG D +AG ++ AG + G + A G+ Sbjct: 664 QTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGS 718 Score = 32.4 bits (73), Expect = 0.007 Identities = 25/81 (30%), Positives = 27/81 (33%) Query: 398 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 457 G S AG D S +AG A S AG A G S AG D Sbjct: 723 GYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADS 782 Query: 458 SKMAGMDHGSMAGMDHSKMAG 478 S +AG AG AG Sbjct: 783 SLIAGYGSTQTAGYHSILTAG 803 Score = 30.9 bits (69), Expect = 0.024 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%) Query: 396 MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGM 455 + G AG + ++G D MAG +AG D AG D SK+ ++ + Sbjct: 1105 IAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAG-DRSKLLAGNNSYLTAG 1163 Query: 456 DHSKM-AGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 495 D SK+ AG D MAG D SK+ + +T +S + S Sbjct: 1164 DRSKLTAGNDCILMAG-DRSKLTAGINSILTAGCRSKLIGS 1203 Score = 30.5 bits (68), Expect = 0.031 Identities = 22/96 (22%), Positives = 35/96 (36%) Query: 404 MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGM 463 A + AG + AG D S +AG +G+ AG ++G+ AG Sbjct: 1001 TAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGY 1060 Query: 464 DHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 499 ++G S AG + S +A + Q Sbjct: 1061 GSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQ 1096 Score = 30.1 bits (67), Expect = 0.037 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 396 MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGM 455 + G+ AG S ++G AG +++A +AG + +++ G +AG Sbjct: 1049 ISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGK 1108 Query: 456 DHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAA 494 S+ AG ++G D +MAG + G + S A Sbjct: 1109 GSSQTAGYRSTLISGADSVQMAG-ERGKLIAGADSTQTA 1146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 7e-24 Identities = 36/117 (30%), Positives = 63/117 (53%) Query: 2 KLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGWE 61 +LVA+D+ I L Q L+ AG+ V ++ + DL++ DV+MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118 +L ++ A ++PVL ++A++ +K E GA DYL KPF +EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.027 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 22/104 (21%) Query: 356 VSNILSNALRYTPEGHDIAVRIVEAADQVNLSVQNNGATIDPEHINKIFDRFYRADPARR 415 V N + + + P+G I ++ + V L V+N G Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-------------------SLAL 304 Query: 416 EGSPSNAGLGLAITRSIIEAHGG---RIWCTSADGVTSFHIALP 456 + + + G GL R ++ G +I + G + + +P Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.005 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 12/103 (11%) Query: 310 AARRAQVRQLEDEQEAALREHKAQLETDLADYQR----LQRAVQRSRETLLPLAEDRVRL 365 ++ L EQ + + K Q E +L + + + R Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240 Query: 366 ALADYRAGKSPLSEVLTARRQRVETRLQDIDLQGQLAATAARL 408 + + VL + VE +L ++L Sbjct: 241 S-SLLHKQAIAKHAVLEQENKYVE-------AVNELRVYKSQL 275
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 1e-07 Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 37/226 (16%) Query: 134 ERTYGRATGDVVAKGAPLADVLTPEWAGLQEEYLALQRSGDNELRAAARQRLLLAGMPAD 193 E Y A ++ + L + E +EEY + + NE+ RQ Sbjct: 258 ENKYVEAVNELRVYKSQLEQ-IESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI---GL 313 Query: 194 LINRIDRTGRVQNSVTLLAPTAGVLQALELR-PGMTMTPGATLAKINGIANV-WLEAAVP 251 L + + Q + + AP + +Q L++ G +T TL I + + A V Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 252 EAQAQGLQEGQAVQANLAAFPGE---PVPGKLTALLADADLQSRT---LRLRIELP---- 301 + GQ + AFP + GK+ + DA R + I + Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCL 433 Query: 302 ---NPGGRLRPGMTAQVSLHPSGQQDDSLLVPAEAIIRTGKRDLVM 344 N L GM A I+TG R ++ Sbjct: 434 STGNKNIPLSSGM------------------AVTAEIKTGMRSVIS 461 Score = 29.0 bits (65), Expect = 0.041 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 5/97 (5%) Query: 103 GQLARTLQVSGVLTFDERDFSVLQARTGGYVERTYGRATGDVVAKGAPLADVLTPEWAGL 162 GQ+ +G LT R + + V+ + G+ V KG L + G Sbjct: 78 GQVEIVATANGKLTHSGRSKEI-KPIENSIVKEIIVK-EGESVRKGDVLLKLTAL---GA 132 Query: 163 QEEYLALQRSGDNELRAAARQRLLLAGMPADLINRID 199 + + L Q S R ++L + + + + Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 669 bits (1728), Expect = 0.0 Identities = 207/1056 (19%), Positives = 428/1056 (40%), Gaps = 47/1056 (4%) Query: 5 LIRWSVGNRVLVLLATLFAVAWGVFSLRSLPIDALPDLSDVQVIIRTSYPGQAPQIVENQ 64 + + + + + + + G ++ LP+ P ++ V + +YPG Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLTTTMLSVPGAKTVRGFSA-FGDSFVYVLFEDGTDLYWARSRVLEYLSQVQSRLPA 123 VT + M + + S G + + F+ GTD A+ +V L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 SAK-PVLGPDATGVGWIYQYALVDRSGTHDLAQLRSLQDWFLRFELKTLPDVAEVATIGG 182 + + + + ++ V + + ++ L L V +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 183 MVKQYQVVLDPLRMASLGITQVEVSDAIAKANQETGGG------VLEQGEAEFMVRASGY 236 ++ LD + +T V+V + + N + G L + + A Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 237 LKSLDDFRAIPLRLAAKGIPVTLGDVATVQLGPEARRGIGELDGQGEAVGGVVILRSGKN 296 K+ ++F + LR+ + G V L DVA V+LG E I ++G+ A G + L +G N Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 297 AKDAIAHVKSKLESLEKSLPAGVELVTTYDRSQLIDRAVENLSQKLIEEFIVVALVCAAF 356 A D +K+KL L+ P G++++ YD + + ++ + + L E ++V LV F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 LWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAIAIGAMVDAAVVMIENAHK 416 L ++R++L+ +++PV +L ++ G + N +++ G+ +AIG +VD A+V++EN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 RVEAWHTWHPGKSLRGEDHWKVMTEAAVEVGPALFFSLMIITLSFIPVFTLQAQEGRLFA 476 + + ++ ++ AL M+++ FIP+ G ++ Sbjct: 419 VMME----------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 477 PLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGRLPAEERNP------LNRTLIRL---YRP 527 + T AMA + +++ L P L ++ N N T Y Sbjct: 469 QFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTN 528 Query: 528 ALEIVLRRPKLTLAGALLILLSSVWPLSQLGGEFLPPLDEGDLLYMPTALPGLSAQKASE 587 ++ +L L LI+ V +L FLP D+G L M G + ++ + Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 588 LLQRTDR--LIRTVPEVASVFGKAGRAESATDPAPLEMFETTVRLKPKDQW-RAGMTTEK 644 +L + L V SVF G + S F V LKP ++ + E Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEA 645 Query: 645 LIEELDRTVQVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSNLNEI-DRVTLAIEKV 703 +I + + + +++ + AG + + + Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 704 AKTVPGVTSALAERLTGGRYIDLDIDRQFAARYGLNIADVQAIVAGAVGGENIGETVEGL 763 A+ + S L L++D++ A G++++D+ ++ A+GG + + ++ Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 764 ARYPISVRYPREWRDSVDALRQLPIYTSQGGRITLGTVARVRIADGPPMLKSENARPSGW 823 + V+ ++R + + +L + ++ G + G P L+ N PS Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825 Query: 824 VYIDVR-RRDLSSVVADLRRLVDQQVKLDPGISLSYSGQFEYLERANARLAWVVPATLAI 882 + + +A + L KL GI ++G + + +V + + Sbjct: 826 IQGEAAPGTSSGDAMALMENLAS---KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 883 IFVLLYLTFGRLGEALLIMATLPFALTGGVWLLYMMGYNLSVATGVGFIALAGVAAEFGV 942 +F+ L + + +M +P + G + + V VG + G++A+ + Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 943 IMLIYLNNAWTERNGNGTQGQPALLDAIREGAVQRIRPKAMTVAVIVAGLMPILWSSGTG 1002 +++ + + E+ G G +A R+RP MT + G++P+ S+G G Sbjct: 943 LIVEFAKDLM-EKEGKGVV------EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 1003 SEVMSRIAVPMVGGMLTAPLLSLFVIPAAYWLVRRR 1038 S + + + ++GGM++A LL++F +P + ++RR Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 82.2 bits (203), Expect = 7e-18 Identities = 97/524 (18%), Positives = 183/524 (34%), Gaps = 54/524 (10%) Query: 4 NLIRWSVGNRVLVLLATLFAVAWGVFSLRSLPIDALPDLSDVQVIIRTSYPGQAP----Q 59 N + +G+ LL VA V LP LP+ + P A Q Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 60 IVENQVT-YPLTTTMLSVPGAKTVRGFSAFG----DSFVYVLFEDGTDLYWARSRVLEYL 114 V +QVT Y L +V TV GFS G +V + + + + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 115 SQVQSRL---------PASAKPVLGPDATGVGWIYQYALVDRSGTHDLAQLRSLQDWFLR 165 + + L P + ++ + + L+D++G L ++ L Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATG---FDFELIDQAGL-GHDALTQARNQLLG 703 Query: 166 FELKTLPDVAEV-ATIGGMVKQYQVVLDPLRMASLGITQVEVSDAIAKA-NQETGGGVLE 223 + + V Q+++ +D + +LG++ +++ I+ A ++ Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 224 QGEA-EFMVRA-SGYLKSLDDFRAIPLRLAAKGIPVTLGDVATVQLGPEARRGIGELDGQ 281 +G + V+A + + +D + +R +A G V T + R + +G Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVR-SANGEMVPFSAFTTSHWVYGSPR-LERYNGL 821 Query: 282 GEAVGGVVILRSGKNAKDAIAHVKSKLESLEKSLPAGVELVTTYDRSQLIDRAVENLSQK 341 G ++ DA+A +E+L LPAG+ S + Sbjct: 822 PSMEIQGEAA-PGTSSGDAMA----LMENLASKLPAGIGY-DWTGMSYQERLSGNQAPAL 875 Query: 342 LIEEFIVVALVCAAFLWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAIAIG 401 + F+VV L AA + ++ +P+G++ L+ ++ + G+ IG Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 402 AMVDAAVVMIENAHKRVEAWHTWHPGKSLRGEDHWKVMTEAAVEVG-----PALFFSLMI 456 A++++E A +E GK + EA + P L SL Sbjct: 936 LSAKNAILIVEFAKDLME-----KEGKGVV---------EATLMAVRMRLRPILMTSLAF 981 Query: 457 ITLSFIPVFTLQAQEGRLFAPLAFTKTYAMAAAAGLSVTLVPVL 500 I L +P+ + M +A L++ VPV Sbjct: 982 I-LGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 72.2 bits (177), Expect = 8e-15 Identities = 86/548 (15%), Positives = 189/548 (34%), Gaps = 73/548 (13%) Query: 530 EIVLRRPKLTLAGALLILLSSVWPLSQLGGEFLPPLDEGDLLYMP-----TALPGLSAQK 584 +RRP A++++++ + QL P + P PG AQ Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIA------PPAVSVSANYPGADAQT 56 Query: 585 -ASELLQRTDRLIRTVPEVASVFGKAGRAESATDPAPLEMFETTVRLKP-----KDQWRA 638 + Q ++ + + + + + A S T T+ + Q + Sbjct: 57 VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVT---------ITLTFQSGTDPDIAQVQV 107 Query: 639 GMTTEKLIEELDRTVQVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSNLNEIDRVTL 698 + L + VQ G++ ++ ++ G + D Sbjct: 108 QNKLQLATPLLPQEVQQQGIS----------VEKSSSSYLMVAGFVSDNPGTTQDDISDY 157 Query: 699 AIEKVA---KTVPGVTSALAERLTGGRY-IDLDIDRQFAARYGLNIADV--------QAI 746 V + GV +L G +Y + + +D +Y L DV I Sbjct: 158 VASNVKDTLSRLNGVGDV---QLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQI 214 Query: 747 VAGAVGGENIGETVEGLARYPISVRYPREWRDSVDALRQLPIYTSQ-GGRITLGTVARVR 805 AG +GG + A R+ + + ++ + + G + L VARV Sbjct: 215 AAGQLGGTPALPGQQLNASIIAQTRF-----KNPEEFGKVTLRVNSDGSVVRLKDVARVE 269 Query: 806 I-ADGPPMLKSENARPSGWVYIDVRRRDLSSVVADL--RRLVDQQVKLDPGISLSYSGQF 862 + + ++ N +P+ + I + + A +L + Q G+ + Y + Sbjct: 270 LGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP--Y 327 Query: 863 EYLERANARLAWVVPATL---AIIFVLLYLTFGRLGEALLIMATLPFALTGGVWLLYMMG 919 + + VV ++F+++YL + L+ +P L G +L G Sbjct: 328 DTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 920 YNLSVATGVGFIALAGVAAEFGVIMLIYLNNAWTERNGNGTQGQPALLDAIREGAVQRIR 979 Y+++ T G + G+ + ++++ N + + A ++ + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVV---ENVERVMMEDKLPPKEATEKSMSQIQ----G 440 Query: 980 PKAMTVAVIVAGLMPILWSSGTGSEVMSRIAVPMVGGMLTAPLLSLFVIPA-AYWLVRRR 1038 V+ A +P+ + G+ + + ++ +V M + L++L + PA L++ Sbjct: 441 ALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPV 500 Query: 1039 GLAVHDNP 1046 H+N Sbjct: 501 SAEHHENK 508
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 3e-19 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 2 RVLVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLPGIDGWD 61 +LV +D+ L Q LS +GY V I N LV+ DV +P + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLETIRKT-SRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARI-RSLQRR 117 LL I+K + +++++A+ +K + GA DYL KPF+ EL+ I R+L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 806 bits (2084), Expect = 0.0 Identities = 234/1064 (21%), Positives = 433/1064 (40%), Gaps = 59/1064 (5%) Query: 5 IIRFAIEQRIVVMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64 + F I + I + +I+ G + +LP+ P I V ++ PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFPVETAMAGLPGLQQTRSLSRS-GLSQVTVIFKDGTDIFFARQLINERLQVAKEQLPE 123 +T +E M G+ L S S S G +T+ F+ GTD A+ + +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEAVMGPVSTGLGEIFLWTVEAEDGAVKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 V+ V +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 INTIGGYAKQFLVAPDPKRLATYKLTLNDLVAALESNNANVGAGYI------ERNGEQLL 237 + G + D L YKLT D++ L+ N + AG + Sbjct: 175 VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVGNIEDIANIVI-TSVDGAPIRISSVADVSIGKELRTGAATENGREVVLGTVFM 296 I A + N E+ + + + DG+ +R+ VA V +G E A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLADINRTLPKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILVIA 356 G N+ ++A+ AKLA++ P+G+ + YD T V+ +I V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 ILFLFLGNIRAALITAMVIPLSMLFTFTGMFNNKVSANLMSLG--ALDFGIIVDGAVVIV 414 +++LFL N+RA LI + +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQHKHGRMLTKTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEG 474 EN R + K + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMED---------KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVMALLGAMVLSVTFVPAAIAMFVTGKVKEEEGVVMRTARL---------- 524 ++ + T+V A+ ++++++ PA A + E Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYEPVLQWVLGHRNIAFSAAVALVVLSGLLASRMGSEFIPSLSEGDFAMQAMRVPGTSL- 583 Y + +LG +V +L R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 584 -TQSVEMQQRLEKAVIAQVPEVERMFARSGTAEIASDPMPPNASDAYIMLKPQDQWPNPK 642 TQ V + Q + + + VE +F +G + NA A++ LKP ++ + Sbjct: 585 RTQKV-LDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 643 KPRDELIAEVQKAAAGVPGSNYELSQPIQLRFNELISGVRSDVA-VKVFGDDMDVLNNTA 701 + +I + + EL + D + G D L Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQAR 698 Query: 702 NKIAAALKAVPGS-SEVKVEQTSGLPVLTINIDREKAARYGLNIADVQNSIAIAVGGRQA 760 N++ P S V+ + +D+EKA G++++D+ +I+ A+GG Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 761 GTLYEGDRRFDMVVRLPETVRTDVAGMSSLLIPVPANAAQGANQIGFIPLSQVANLDLQL 820 + R + V+ R + L V + + +P S Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKL--YVRSANGE------MVPFSAFTTSHWVY 810 Query: 821 GPNQISRENGKRLVIVSANVRGRDLGSFVEEATASLDK-KVQIPAGYWTTWGGQFEQLQS 879 G ++ R NG + + G+ +A A ++ ++PAG W G Q + Sbjct: 811 GSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERL 867 Query: 880 AAKRLQIVVPVALLLVMTLLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSISAG 939 + + +V ++ ++V L ++ + + V +P + G ++A L + + Sbjct: 868 SGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFM 927 Query: 940 VGFIALSGVAVLNGLVMIAFIRGLRE-EGRTLRQAVDEGALTRLRPVLMTALVASLGFIP 998 VG + G++ N ++++ F + L E EG+ + +A RLRP+LMT+L LG +P Sbjct: 928 VGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 999 MALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYHWAHRK 1042 +A++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 8e-08 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 149 ASQQISDLRSEQQAAQRRVELARVTFEREKQLWQDKISAEQDYLQARQALQEAEISLANA 208 A ++ +S+ + + + A+ ++ QL++++I Q + + LA Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL--DKLRQTTDNIGLLTLELAKN 321 Query: 209 KQKVGAIGASVNSVGGNRYELRAPFDAVVVE-KHLTVGEVVSEATNAFILSDLNQV-WAT 266 +++ +RAP V + K T G VV+ A ++ + T Sbjct: 322 EERQQ------------ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVT 369 Query: 267 FAVPPTDLGKVTTGRAVKV 285 V D+G + G+ + Sbjct: 370 ALVQNKDIGFINVGQNAII 388 Score = 39.4 bits (92), Expect = 2e-05 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 88 AGVALEAAAPRDLGTVVSFPGEIRFDEDRTAHVVPRVPGVVEAVQANLGETVKKGQVLAV 147 +A + + V + G++ + P +V+ + GE+V+KG VL Sbjct: 68 LVIAFILSVLGQVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLK 126 Query: 148 IASQQISDLRSEQQAAQRRVELARVTFER---------EKQLWQDKISAEQDYLQARQAL 198 + + ++ Q + AR+ R +L + K+ E + + Sbjct: 127 LTALG---AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 199 QEAEISLANA 208 SL Sbjct: 184 VLRLTSLIKE 193
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.010 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 8/174 (4%) Query: 141 GRVRAGKSSPVEATRAQVQLAEAQLQVRRAETEKATAYQQLAQITGSSVTVFDRLESPTL 200 V S V+A ++A++ + + +T + + + + V E P + Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 201 SPGLPPRTEDLLAKLDQTAEMRQ--AVVQIDKSDASLGSEKAQRIPNLTVSVGSQYDRSV 258 + + P+ E Q R+ V I + + + P S +V Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS------SNV 1179 Query: 259 RERVNTVGLSMPLPLFDRNQGNILSASRRADQARDQRNAVELRLRTETQTALNQ 312 + V N N A+ + + N + R R ++ + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 1e-18 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 2 RILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGWQ 61 ILV +D+ + Q L+ GY V + + +L++ D+ +P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARV-RALMRRSD 120 +L +++ +++++A++ ++ E GA DYL KPF+ EL+ + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 HPASVEVIR 129 P+ +E Sbjct: 125 RPSKLEDDS 133
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 319 bits (818), Expect = e-106 Identities = 106/426 (24%), Positives = 200/426 (46%), Gaps = 9/426 (2%) Query: 41 PRVVRLTIWGVILFFVFLIVWASVAPIDEVTRGEGKAIPSSKVQKIQNLEGGIVAEIFAK 100 R RL + ++ F V + + + ++ V GK S + ++I+ +E IV EI K Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 101 EGQIVEVGQPLLRLDETRFASNVGETEADRLAMALRVERLSAE--------VQDSPLIID 152 EG+ V G LL+L ++ +T++ L L R + + L + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 153 EKLRKAAPNQAASEESLYQSRRQQLQDEIGGLQQQLVQRQQELREYSSKRTQYANSLELL 212 + + + SL + + Q++ + L +++ E ++ +Y N + Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 213 RKEISMSEPLVATGAISQVEVLRLRRAEVENRGQLDSTALAIPRAEAAIREVQSKIEETR 272 + + L+ AI++ VL VE +L + + E+ I + + + Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 273 GKFRSEALTQLNEARTELNKATATSKALDDRVHRTLVTSPVRGIVKQLLVNTIGGVIQPG 332 F++E L +L + + T ++R +++ +PV V+QL V+T GGV+ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 333 SDIIEVVPLDDTLVIEAKILPKDIAFLHPGQEATVKFTAYDYTIYGGLKAKLEQIGADTI 392 ++ +VP DDTL + A + KDI F++ GQ A +K A+ YT YG L K++ I D I Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413 Query: 393 TDEDKKTTYYLIKLRTDRSHLGTDEKPLLIIPGMVATVDIMTGKKTIMSYLLKPIMKARS 452 D+ + + + + + + L T K + + GM T +I TG ++++SYLL P+ ++ + Sbjct: 414 EDQ-RLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 453 EALRER 458 E+LRER Sbjct: 473 ESLRER 478
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 91.2 bits (226), Expect = 5e-20 Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 11/214 (5%) Query: 8799 GADTIDSGNGNDIIFGDLITLNGVVSEGYQALQTYVAQKSGVEVGAVTTSNVHQYITEHY 8858 T +G+ + ++ +AL V G + + + +Q I + Sbjct: 260 ANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNE 319 Query: 8859 TEFDISGAKDGNDILSGGNGNDILFGQGGSDTLDGGKGNDILLGGTGNDTLIGGQGDDIL 8918 F G GN ++ G + G G+D L G ++IL GG GND L GG G D L Sbjct: 320 GSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTL 379 Query: 8919 IGGSGADTFVWKAGDI----GNDVIKDFNKAEGDRIDLKDLLQGEKGSTIDNYLKLTTVE 8974 GG+G DTFV+ +G D I DF D+IDL + S + + T Sbjct: 380 YGGAGRDTFVYGSGQDSTVAAYDWIADFQ-KGIDKIDLSAFRNEGQLSFVQDQ--FTGKG 436 Query: 8975 GTTTLQVSSEGKL----NAEGGIANADVTIKLEG 9004 LQ + + E G ++ D +++ G Sbjct: 437 QEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVG 470
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 5e-19 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 6/152 (3%) Query: 3 VLIVDDEPQGRERLSRLLGELEGYTVLEPSATNGDEALALIESLKPDVVLLDIGMPGLDG 62 +L+ DD+ R L++ L GY V +N I + D+V+ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQAL-SRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LQVAARLCEREAPPAVVFCSG--DDEYGAEAFKDSTLSHVTKPFQAQALRDALRKAEKPN 120 + R+ + V+ S +A + ++ KPF L + +A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 RAQLAALTRPANEGGGPRSHISARTRKGIELI 152 + + + L + +G SA ++ ++ Sbjct: 123 KRRPSKLEDDSQDGMPLVGR-SAAMQEIYRVL 153
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 112 bits (282), Expect = 6e-33 Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 15/220 (6%) Query: 6 VLGLCLMAPLALAD----NDDHD-LAYSLGASLGERLRQEMPGLQLDALVEGLKQSYQGQ 60 ++GL + +A D D D L+YS+GA LG+ + + + D L +G++ G Sbjct: 10 IMGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGA 69 Query: 61 PLKLDKARMQAVLQQHE-------TQEGDAAVQKLQAAETRFMANERGRYGVHELTEGVL 113 L L + +M+ VL + + + E + ++ +A F++ + + G+ L G+ Sbjct: 70 QLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQ 129 Query: 114 YSELQPGTGVQPKAGGKVQVRYVGRLPDGSIFDQNQ---TPQWFNLDSVIEGWQVALPKM 170 Y + GTG +P V V Y G L DG++FD + P F + VI GW AL M Sbjct: 130 YKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLM 189 Query: 171 HTGAKWRLVIPSAQAYGAEGAGDLIAPYTPLVFEIELLAV 210 G+ W + +P+ AYG G I P L+F+I L++V Sbjct: 190 PAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 62.4 bits (151), Expect = 1e-12 Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 6/206 (2%) Query: 138 VAKATAAAKPAAKPAAKATAAAKPAAKPAARATAAAKPA-AKPAAKATAAA---KPAAKP 193 T P A + + PA A P+ A K +K Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 194 AAKATAAAKPAAKPAAKATAAAKPAAKPATKATAAAKPAAKPAAKATAAAKPAAKPAAKA 253 K A + AK K T+ A+ ++ T K A + Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 254 TAAAKPAAKATAAAKPAAKPA--AKAPAAKPAAKPAAAKAPARTAAKAAAKPAEAKPATP 311 A + + ++ +P A+PA P + ++ Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 312 PAATTNSVSPPAAAPSAPVSTPAQAP 337 PA T+S S V+T Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVV 1196 Score = 37.4 bits (86), Expect = 9e-05 Identities = 25/170 (14%), Positives = 40/170 (23%), Gaps = 18/170 (10%) Query: 180 AAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAK--------PAAKPATKATAA--A 229 K A P+ + A PA T T A + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 230 KPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKATAAAKPAAKPAAKAPAAKPAAKPAA- 288 K +K K A + AK KA A+ ++ + Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 289 -------AKAPARTAAKAAAKPAEAKPATPPAATTNSVSPPAAAPSAPVS 331 AK + ++ P + T + PA V+ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.003 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%) Query: 2 SDARSITLDEIDRQLI--ALLQINARESVATLARQLGIARTTVNSRLERL 49 S L E++ LI AL + A A LG+ R T+ ++ L Sbjct: 426 SGLYDRVLAEMEYPLILAALTATRGNQIKA--ADLLGLNRNTLRKKIREL 473
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 27.7 bits (61), Expect = 0.033 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 23/116 (19%) Query: 22 ASVDERFTVDQLLALAVQHEVDTSPLDVKSLLSVLGIKLLSVPMSDDVSG---MLSLADN 78 A +E ++ + V +D + L + L +DVS M+ L DN Sbjct: 26 ACSNEADSLTTSIDAPVTASIDLQSVSYTDLATQL----------NDVSDFGKMIILKDN 75 Query: 79 SKDWVVKVNALHHPNRQRFTIAHEIAHFSRHRFQQA-------EFKDLNFFRNGES 127 + V V+ R + + +E R + + EF L F+RNGES Sbjct: 76 GFNRQVHVSMDK---RTKIQLDNENVRLFNGRDKDSTSFILGDEFAVLRFYRNGES 128
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.5 bits (224), Expect = 1e-22 Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 16/253 (6%) Query: 213 GRRALVTGAARGIGAAIAETLARDGADVLLLDVPQASQDLDALAARLGGK---ALPLDIC 269 G+ A +TGAA+GIG A+A TLA GA + +D + + + + A P D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 270 ASDAA---TQLLAALPDGIDIVVHNAGITRDKTLANMTPEYWDAVLAVNLKAPQVLTQAL 326 S A T + IDI+V+ AG+ R + +++ E W+A +VN ++++ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 327 YDNGALGENARITLLASVSGIAGNRGQANYAASKAGLIGLAQAWAPRLAERGGSINAIAP 386 + I + S A YA+SKA + + LAE N ++P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 387 GFIETHM----------TAAMPMGLREAGRRLSSLGQGGRPQDVAEAIAWLSQPGSGSVN 436 G ET M + G E + L + +P D+A+A+ +L +G + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 437 GQVLRVCGQALMG 449 L V G A +G Sbjct: 248 MHNLCVDGGATLG 260
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 329 bits (845), Expect = e-116 Identities = 150/283 (53%), Positives = 191/283 (67%), Gaps = 2/283 (0%) Query: 3 LWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTT--QHP 60 L L P + +L + L++GSF+NV+++RLPIMLER+WQ E + P Sbjct: 4 LLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEP 63 Query: 61 RFDLCLPASRCPHCAHRIRAWENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLV 120 ++L +P S CPHC H I A ENIP++S+L L GRC C+ IS RYP+VE+ +ALLS+ Sbjct: 64 PYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVA 123 Query: 121 VAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVLPTMWLGLIVNAFGIHVPLAD 180 VA L AL LTW L+AL+ ID D LLPD L LP +W GL+ N G V L D Sbjct: 124 VAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGD 183 Query: 181 ALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA 240 A+ GA+AGYL LW++YW F+L+TGKEGMGYGDFKL+A +GAW GWQ LP+ LLLSS+VGA Sbjct: 184 AVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243 Query: 241 LVGLCLLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYI 283 +G+ L+ R H IPFGPYLAIAGWIA+LWGD I Y+ Sbjct: 244 FMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 428 bits (1103), Expect = e-151 Identities = 129/405 (31%), Positives = 205/405 (50%), Gaps = 10/405 (2%) Query: 7 LYRWHGTDANGTPVSGQTPGRSPAYVRAGLIRQGITVASLRP---------SSGLAFSLP 57 Y + DA G G S R L +G+ S+ S+GL+ Sbjct: 3 QYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRK 62 Query: 58 KRRQKADPAGFSRQLATLLKAGVPLLQAFEVMGRSGCDAAQAALLERLKQDVASGLGLAD 117 R +D A +RQLATL+ A +PL +A + + + + L+ ++ V G LAD Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 118 ALQRHPAWFDALYCNLVRVGEQSGTLDRQLEQLAGMLEQRRVLHKKVRKAMIYPLLLLLT 177 A++ P F+ LYC +V GE SG LD L +LA EQR+ + ++++AMIYP +L + Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 178 GLGVSAILLLEVIPKFESMFSGMGAALPAFTQWVINLSTGLSRFAPLLLVMGVVLGVAVR 237 + V +ILL V+PK F M ALP T+ ++ +S + F P +L+ + +A R Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFR 242 Query: 238 QLYRQHAPARLWISRRVLGLPVFGKLLGQAALARFARSLATSYGAGVPLLDALGTVARVT 297 + RQ R+ RR+L LP+ G++ AR+AR+L+ + VPLL A+ V Sbjct: 243 VMLRQE-KRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVM 301 Query: 298 GGDLHEQAVLRLRQGMANGQGLNQAMAGEPLFPPLLVQLTAIGESSGTLDQMLEKAASHY 357 D + + G L++A+ LFPP++ + A GE SG LD MLE+AA + Sbjct: 302 SNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQ 361 Query: 358 EEQVSQALDQLTSLLEPAIVLILGLLVGGLVVAMYLPIFQLGSLI 402 + + S + L EP +V+ + +V +V+A+ PI QL +L+ Sbjct: 362 DREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 55.3 bits (133), Expect = 9e-13 Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 1 MKGQRGITLIELMIVVAIIGILATIALPMYTNHQARSKAAAGLLEISALKTAMDL-RLND 59 QRG TL+E+M+V+ IIG+LA++ +P ++ ++ + +I AL+ A+D+ +L++ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 60 GK 61 Sbjct: 64 HH 65
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 169 bits (429), Expect = 4e-55 Identities = 88/205 (42%), Positives = 124/205 (60%), Gaps = 6/205 (2%) Query: 5 NLSTDETRVSYGIGRQLGGQLRDNPPPGVSLEAILAGLTDAFNGADSRVSEADLSASF-K 63 +L+TD+ ++SY IG LG + N ++ + + G+ D +GA ++E + K Sbjct: 26 SLTTDKDKLSYSIGADLGKNFK-NQGIDINPDVLAKGMQDGMSGAQLILTEEQMKDVLSK 84 Query: 64 VIREVM---QAEAAAKAEAAAAAGKEFLVENAKREGITTLASGLQFEVLTAGEGAKPTRE 120 +++M AE KAE A G FL N + GI L SGLQ++++ AG GAKP + Sbjct: 85 FQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKS 144 Query: 121 DNVRTHYHGTLIDGTVFDSSYERGQPAEFPVGGVIAGWTEALQLMNAGSKWRLYVPSELA 180 D V Y GTLIDGTVFDS+ + G+PA F V VI GWTEALQLM AGS W ++VP++LA Sbjct: 145 DTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLA 204 Query: 181 YGAQGVGS-IPPHSVLVFDVELLDV 204 YG + VG I P+ L+F + L+ V Sbjct: 205 YGPRSVGGPIGPNETLIFKIHLISV 229
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 30.2 bits (68), Expect = 0.015 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 34/169 (20%) Query: 245 VDIAPLDESSPADAAEVIVNELT-----RFSPSLAERE-------RWLVLNKA----DMV 288 V I S AD AE E+T R SL +R+ V + V Sbjct: 39 VQIVSGTLQSIADMAE----EVTFVFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKV 94 Query: 289 MDDERDERVQEVIDRLEWEGPVYVISAISK----QGTDKLSHDLMRYLEDRADRLANDPA 344 + E+ + V E++ L P +S + + + M L D L P Sbjct: 95 PELEQKQNVSELLSLLS-NSPNISLSQLKAYLEGKSEEPSEQFKM--LCGLRDALKGRPE 151 Query: 345 YAEELADLDQRIED-------EARAQLQALDDARTLRRTGVKSVHDIGD 386 A ++Q + + +A ++GV + + D Sbjct: 152 LAHLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRD 200
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.3 bits (102), Expect = 9e-07 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 19/147 (12%) Query: 124 TLRTLVDLGV---------VPVINENDTVVTDEIRFGDNDTLAALVANLVEADLLVILTD 174 T++ LV+ GV VPVI E+ + E D D +A V AD+ +ILTD Sbjct: 178 TIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTD 236 Query: 175 RDGMFDADPRNNPEAQLIYEARADDPSLDAVAGGTGGALGRGGMQTKLRAARLAARSGAH 234 +G + Q + E + ++ G G M K+ AA G Sbjct: 237 VNGAALY--YGTEKEQWLREVKVEELRKYYEEGH----FKAGSMGPKVLAAIRFIEWGGE 290 Query: 235 TIIIGGRIERVLDRLKAGERLGTLLSP 261 II +E+ ++ L G+ GT + P Sbjct: 291 RAII-AHLEKAVEAL-EGKT-GTQVLP 314
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 40.8 bits (95), Expect = 2e-05 Identities = 41/254 (16%), Positives = 87/254 (34%), Gaps = 27/254 (10%) Query: 453 AIDLTHIDPPALQALADRAALRDQKERLEKELKQLKTQQAVAADRSASKAQTETLYQEVL 512 A +L H + A+QA +R L +E+ KE + +A KA +QE Sbjct: 112 ATELAHANNAAMQAEDERLRLAKAEEKARKEAE------------AAEKA-----FQE-- 152 Query: 513 DAQKALEDFRRSQTLTAEEPEKLEQLSQLEAAQDELKRSSDAFTERVQQLSAKLQL-VGR 571 A++ ++ R + T + + E + AA E ++ + Q+ + Q V + Sbjct: 153 -AEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEI----AQKKLSAAQSEVVK 207 Query: 572 QLGDLESKQRTLEDALRRRQLLPADLPYGTPYMEAIDDSMDNLLPLLNDYQDSWQSLQRV 631 G++++ L ++ R L + L L+ + Sbjct: 208 MDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQN 267 Query: 632 DNQIEALYAQVRLKGVAKFDSEDDM--ERRLQLLVNAYAHRTDEALTLAKARRAAVTDIA 689 EA +V + + + E R+ + ++ R A + + Sbjct: 268 RPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVH 327 Query: 690 RTLRNIRSDYDSLE 703 N++ ++L Sbjct: 328 EAEENLKKAQNNLL 341
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 7e-12 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 169 AANILVVDDSQVALQQSVHTLRNLGIECHTARSAKDAINVLLELQGTAQEINIIVSDIEM 228 A ILV DD L G + +A + A + +++V+D+ M Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-----AAGDGDLVVTDVVM 57 Query: 229 SEMDGYAFTRTLRETPDFQHLYVLLHTSLDSAMSSEKATQAGANAILTK 277 + + + +++ L VL+ ++ ++ M++ KA++ GA L K Sbjct: 58 PDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 257 bits (659), Expect = 8e-84 Identities = 91/426 (21%), Positives = 172/426 (40%), Gaps = 58/426 (13%) Query: 21 RAGRIITLCALMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAQMSVAEG 80 I L + +V V+T GK+ S R + I+ E IV ++ V EG Sbjct: 59 LVAYFIMGF---LVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEG 115 Query: 81 DLVERGQVLAQLDPTKTASSVGESEAKYRAAKASQARLQAEVTG---------KPLTFPA 131 + V +G VL +L + ++++ A+ Q R Q K P Sbjct: 116 ESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPY 175 Query: 132 SLRDSPDLIDAETALYQTRRR---------------------GLEQTLAGIQDSLQLVRS 170 S + + T+L + + + + ++ ++ +S Sbjct: 176 FQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 171 ELKITENLAKMGASSRVEVI---------------------RLNRQRSELELKANEARSD 209 L +L A ++ V+ ++ + + + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 210 YLVRAREELAKASAEADALSEVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQ 269 + ++L + + L+ + + +R+PV V+ ++V+T GGVV Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 270 VMKIVPMDERLLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTLQD 329 +M IVP D+ L + + +DI FI+ Q A +K+ A+ Y+ YG L GKV I+ D ++D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 330 EVKPEIYYYRVFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKPL-NRAK 388 + + + + V I E++ L + K + GM T +I+TG ++++ YL+ PL Sbjct: 416 Q-RLGLVFN-VIISIEENCL-STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 389 EALRER 394 E+LRER Sbjct: 473 ESLRER 478
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 52.3 bits (125), Expect = 9e-08 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 24/126 (19%) Query: 7912 DVIAGTDGNDHLDGSQG--------GHITLHGGAGDDTLVVVDQNFAS--VDGGSGTDTL 7961 D ++G +G+D L G G G+ L+GG GDD V + A + GG G D L Sbjct: 765 DTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKL 824 Query: 7962 LWGGGDASIDLGNLAGRVHDIEILDLNDTSSVALTLNLADVVAITETGTDTLIIKGDDKD 8021 G +D G ++ ND ++ G + G +D Sbjct: 825 YGSEGADLLDGGEGD---DLLKGGYGNDI-----------YRYLSGYGHHIIDDDGGKED 870 Query: 8022 SVHMTD 8027 + + D Sbjct: 871 KLSLAD 876 Score = 42.6 bits (100), Expect = 8e-05 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Query: 7912 DVIAGTDGNDHLDGSQGGHITLHGGAGDDTLVVVDQNFASVDGGSGTDTLLWGGGDASID 7971 D+I G DGND L G +G L GG GDD L GG G D L+ G+ ++ Sbjct: 747 DLIEGNDGNDRLYGDKGNDT-LSGGNGDDQL----------YGGDGNDKLIGVAGNNYLN 795 Query: 7972 LG 7973 G Sbjct: 796 GG 797 Score = 33.8 bits (77), Expect = 0.033 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 7882 DSAAGLTATTSLLADTGDESAALASLAAATDVIAGTDGNDHLDGSQGGHITLHGGAGDDT 7941 D G+ L GD+ + + A +V+ G GND L GS+G + L GG GDD Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADL-LDGGEGDDL 841 Query: 7942 LVVVDQNFASVDG-GSGTDTLLWGGGD 7967 L N G G + GG Sbjct: 842 LKGGYGNDIYRYLSGYGHHIIDDDGGK 868
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 378 bits (971), Expect = e-129 Identities = 141/369 (38%), Positives = 196/369 (53%), Gaps = 15/369 (4%) Query: 164 ERIEHLALRAEDEHHRAELYRQASGQD-RELIGQSAAHKRLVEEIRLVGSSDLTVLITGE 222 + + RA E R + QD L+G+SAA + + + + +DLT++ITGE Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 223 TGVGKELVAQALHQASNRADKPLVSLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFE 282 +G GKELVA+ALH R + P V++N AA+P L+ESELFGH +GAFTGA G+FE Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 283 LANGGTLFLDEVGELPLTVQAKLLRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVR 342 A GGTLFLDE+G++P+ Q +LLRVLQ G+ +G R DVR++AATN+DL + Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSIN 288 Query: 343 TGNFRADFYHRLSVYPLHVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSHEAQAALI 402 G FR D Y+RL+V PL +PPLR+R D+ L +F++Q + GL+ R EA + Sbjct: 289 QGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMK 347 Query: 403 AYDWPGNVRELEHLIGRSALKALGQHPDRPRILTL-------------EAIDLDLRVSAT 449 A+ WPGNVRELE+L+ R R I A L +S Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 450 TPGTLPSPAAPLQVVTPPEGGLREAVDIYQRQVIEACLQRHQDNWAAAARELGLDRANLS 509 + A PP G + + +I A L + N AA LGL+R L Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 510 RLARRLGLR 518 + R LG+ Sbjct: 468 KKIRELGVS 476
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 101 bits (253), Expect = 2e-25 Identities = 72/364 (19%), Positives = 129/364 (35%), Gaps = 58/364 (15%) Query: 22 VGIDLGTTNSMVAALRSGRSEPLPDAQGNVILPSAVRYLEGRNEVGQAARDAASSDPLNT 81 + IDLGT N+++ G + PS V A + + Sbjct: 13 LSIDLGTANTLIYVKGQGIV---------LNEPSVV------------AIRQDRAGSPKS 51 Query: 82 VLSV----KRLMGRGLADVKQLGEQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILK-V 136 V +V K+++GR ++ + P D V V+ +L+ Sbjct: 52 VAAVGHDAKQMLGRTPGNIAAI--------------RPMKDGVIAD---FFVTEKMLQHF 94 Query: 137 LRERAEATLGGELVGAVITVPAYFDDAQRQATKDAARLAGLSVLRLLNEPTAAAVAYGLD 196 +++ + ++ VP +R+A +++A+ AG + L+ EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 197 QNAEGVVAIYDLGGGTFDISILRLTAGVFEVLATGGDTALGGDDFDHTIAGWIIEQAGLS 256 + + D+GGGT +++++ L V +GGD FD I ++ G Sbjct: 155 VSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSL 209 Query: 257 SDLDPATQRALLQTACAAKEALTDADVVN----VSHGAWHGELT-RSAFEAMIEPLVARS 311 + +R + A V L EA+ EPL Sbjct: 210 IG-EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTG-I 267 Query: 312 LKACRRAVRDSGVELEEVSA---VVMVGGSTRVPRVREAVGALFGRTPLTSIDPDQVVAI 368 + A A+ EL + +V+ GG + + + G + + DP VA Sbjct: 268 VSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVAR 327 Query: 369 GAAI 372 G Sbjct: 328 GGGK 331
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 37.3 bits (86), Expect = 5e-05 Identities = 18/85 (21%), Positives = 23/85 (27%), Gaps = 1/85 (1%) Query: 183 SPLALEQGAAEQPAAAEQAPVSSEATIAAAPAPAQQAPVQPAPAASPAPVTPPVQATAAP 242 +P LE A QP E P P + V P P P PV+ P Sbjct: 56 APADLEPPQAVQPPPEPVVEPEPEPEPIPEP-PKEAPVVIEKPKPKPKPKPKPVKKVEQP 114 Query: 243 APAPAPAVAATEPAAVPAGSAKVAI 267 P + A+ Sbjct: 115 KRDVKPVESRPASPFENTAPARPTS 139 Score = 33.0 bits (75), Expect = 0.001 Identities = 15/84 (17%), Positives = 20/84 (23%), Gaps = 3/84 (3%) Query: 178 QQAESSPLALEQGAAEQPAAAEQAPVSSEATIAAAPAPAQQAPVQPAPAASPAPVTPPVQ 237 P A++ E P AP +P P P PV Q Sbjct: 57 PADLEPPQAVQPPPEPV---VEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQ 113 Query: 238 ATAAPAPAPAPAVAATEPAAVPAG 261 P + + E A Sbjct: 114 PKRDVKPVESRPASPFENTAPARP 137 Score = 32.3 bits (73), Expect = 0.002 Identities = 12/73 (16%), Positives = 19/73 (26%) Query: 194 QPAAAEQAPVSSEATIAAAPAPAQQAPVQPAPAASPAPVTPPVQATAAPAPAPAPAVAAT 253 A + P + + P + P P V + P P P V Sbjct: 55 VAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQP 114 Query: 254 EPAAVPAGSAKVA 266 + P S + Sbjct: 115 KRDVKPVESRPAS 127 Score = 31.9 bits (72), Expect = 0.003 Identities = 28/136 (20%), Positives = 36/136 (26%), Gaps = 1/136 (0%) Query: 173 AVSAGQQAESSPLALEQGAAEQPAAAE-QAPVSSEATIAAAPAPAQQAPVQPAPAASPAP 231 AV AG S +E A QP + AP E A P P +P P P P Sbjct: 27 AVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP 86 Query: 232 VTPPVQATAAPAPAPAPAVAATEPAAVPAGSAKVAIQFTADCWTQVSDGNGKVLFSAIKR 291 P P P P + P K A + + + Sbjct: 87 PKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAAT 146 Query: 292 KGDNLELTGKPPFAVR 307 + P R Sbjct: 147 SKPVTSVASGPRALSR 162
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 31.0 bits (69), Expect = 0.011 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 9/101 (8%) Query: 202 EALGVSIYENTPAIDWQPSEVRTPLAQIRCQWMVPAVEGYAASLPPLGKHQ---LPVQSL 258 E L + ++ P QP AQ + + + AA+ P + HQ LP + Sbjct: 169 EQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAA 228 Query: 259 LVATEPLPEATWEQIGLSKGQAFSESSRQVTYGQRTADNRL 299 V + PL W+Q S Q S +RQ GQ++A+ RL Sbjct: 229 PVLSAPLGSHEWQQ---SLSQHISLFTRQ---GQQSAELRL 263
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 70.8 bits (173), Expect = 4e-19 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 1 MFEVGFSELLLIGVVALLVLGPERLPVAARTLGRGLGQARRAMHALRTQVEREIEMPNLD 60 MF++GFSELLL+ ++ L+VLGP+RLPVA +T+ + R ++ ++ +E+++ Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 61 -------QAPLQRLEQEIRQGISLNAEPANDAATAVLPKENAS 96 +A L L E++ A ++ + Sbjct: 61 DSLKKVEKASLTNLTPELKA-SMDELRQAAESMKRSYVANDPE 102
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 34.2 bits (78), Expect = 2e-05 Identities = 12/45 (26%), Positives = 20/45 (44%) Query: 1 MGGIGIWQLVIVLLIVFLLFGTKRLKGLGSDVGEAIQGFRKSMGG 45 M IG +L++V +I ++ G +RL V I+ R Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATT 45
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 475 bits (1224), Expect = e-163 Identities = 194/629 (30%), Positives = 311/629 (49%), Gaps = 97/629 (15%) Query: 10 ALSLALSMAYAQEPVFDDNGTPMYEVNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTV 69 S +L++ +F + +F T++ EFI++VS+ T I+DP V+G +TV Sbjct: 7 IRSFSLTLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITV 66 Query: 70 RTVDLHDADAIYDIFLAQLRAQGYATVDLPNGSVKIVPDQAARLEPVPV----------- 118 R+ D+ + + Y FL+ L G+A +++ NG +K+V + A+ VPV Sbjct: 67 RSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDE 126 Query: 119 ---------------------EAGGQQGEGS----DSVATRVFSVRNAASEQVLGILKPL 153 + G GS + + + R A +++L I++ + Sbjct: 127 VVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERV 186 Query: 154 IDP--RVGVITPYPAAHQL-------------------------VVTDWRSNL------- 179 + R V P A VV D R+N Sbjct: 187 DNAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEP 246 Query: 180 ---ERIASLLRQLDRPQEAPGNGSTQVIYLRHANAGEVVKVLRGLSQEGAVPAEGAGEAE 236 +RI ++++QLDR Q GN T+VIYL++A A ++V+VL G+S + A Sbjct: 247 NSRQRIIAMIKQLDRQQATQGN--TKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVA 304 Query: 237 GKDRPVMPASGGPGIRLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIRRAQVVVEAIIAE 296 D+ ++ ++ TNA+++ + ++ QLDIRR QV+VEAIIAE Sbjct: 305 ALDKNII---------IKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAE 355 Query: 297 VSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNIASIAGAAASGDSEALGDLLSTTTGAT 356 V D+ LG+QW AG+ F ++G+ I++ A + + G + S+ A Sbjct: 356 VQDADGLNLGIQWANK----NAGMTQFTNSGLPISTAIAGANQYNKD--GTVSSSLASAL 409 Query: 357 AGIGHFGGGF---NFAMLINALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVT 413 + GF N+AML+ AL + ++L+TP+++TLDN EA+ VGQEVP +TGS T Sbjct: 410 SSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQT 469 Query: 414 QNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADTSSASD----VITNKR 469 + N + T+ERK VG+KL++KPQIN +SV L+I QEVSS+AD +S++ N R Sbjct: 470 TSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTR 529 Query: 470 EIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFI 529 + V+V V++GGL+ +S + +VPLLGDIP +G LFRS + + +K+NLM+FI Sbjct: 530 TVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFI 589 Query: 530 RPRILRDGPSLAGLSEDKYRTLQQTTPLQ 558 RP ++RD S +Y Q Sbjct: 590 RPTVIRDRDEYRQASSGQYTAFNDAQSKQ 618
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 453 bits (1167), Expect = e-161 Identities = 176/404 (43%), Positives = 248/404 (61%), Gaps = 8/404 (1%) Query: 1 MPTYRYQAVDLAGKSHKASLQADSERHARQLLREQGLF--------ARQLQRHEAGSRQP 52 M Y YQA+D GK + + +ADS R ARQLLRE+GL Q + G Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGL 112 R+ RLS + L LTRQLATL A +PL +AL + +Q +P L ++ A+R + EG L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 113 ARSLARQGAPFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYPAVLM 172 A ++ F LYCA+V AGE SGHL VL RLAD+ EQ Q+ + + + A+IYP VL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 173 GVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVHAGPWLLGGALLLGGL 232 V++AVV L++ VVPK+ EQF H Q+LPL T +L+G+S + GPW+L L Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 233 AGWLLRKPHWCLRRDQLLLRLPRIGSLLQVLESARLARSLAILTGSGVALLEALQVATET 292 +LR+ + + LL LP IG + + L +AR AR+L+IL S V LL+A++++ + Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 293 IGNRRIRLAMEQVRQHVQGGTSLHRALDASQQFPPLLVNMVGSGEASGTLADMLERVADD 352 + N R + V+ G SLH+AL+ + FPP++ +M+ SGE SG L MLER AD+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 353 QERGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLNQ 396 Q+R F+ Q+ A+ LFEPL+++ M AVVLFIVLA+L PI+QLN Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 217 bits (553), Expect = 5e-76 Identities = 70/141 (49%), Positives = 97/141 (68%), Gaps = 3/141 (2%) Query: 4 RRNRQRGFTLMEIMVVIFIIGLLIAVVAPSVLGNQDKAMKQKVMADLATLEQALDMYRLD 63 ++QRGFTL+EIMVVI IIG+L ++V P+++GN++KA KQK ++D+ LE ALDMY+LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 64 NLRFPSSEQGLAALVKKPAQEPVPRAWRSDGYVRRLPEDPWGTPYQYRMPGEHGRVDVYS 123 N +P++ QGL +LV+ P P+ + +GY++RLP DPWG Y PGEHG D+ S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 124 LGADGLPGGEGQDADLGNWAL 144 G DG G E D+ NW L Sbjct: 123 AGPDGEMGTED---DITNWGL 140
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 37.2 bits (86), Expect = 6e-06 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 4 QRGFSLIELLVVLAIAGLMTGLAVAGLGNG-QASVEQALQRLAVEVRGQAALARHAGQLR 62 QRGF+L+E++++L + G+ G+ + S Q L R ++R GQ Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFF 62 Query: 63 GLRWNGQRPEFVRREGNAWVVEAVPLGDW 91 G+ + R +F+ E A W Sbjct: 63 GVSVHPDRWQFLVLEARDGADPAPADDGW 91
>PilS_PF08805#PilS N terminal Length = 185 Score = 31.4 bits (71), Expect = 5e-04 Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 2 KQAQRGFTLLEVTVALAIAAVLAVITSQVLRQRLAVQDN 40 K+ +G TL+EV + + + VLA ++ + + Sbjct: 22 KEQDKGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQS 60
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.9 bits (62), Expect = 0.017 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 4/28 (14%) Query: 4 RQAGLTLIELMVALALTAVLGIMLAALV 31 +Q G TL+E+MV + ++G+ LA+LV Sbjct: 6 KQRGFTLLEIMVVI---VIIGV-LASLV 29
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 156 bits (396), Expect = 6e-52 Identities = 50/147 (34%), Positives = 79/147 (53%) Query: 8 SEEDRKSIVDGLSRLLSDTYVLYLKTHNFHWNVTGPSFRTLHLMFEEQYNELALAVDSIA 67 ++ ++ + + L+ LS+ ++LY K H FHW V GP F TLH FEE Y+ A VD+IA Sbjct: 6 AKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIA 65 Query: 68 ERIRALGFPAPGSYAFYARHSSIKEEEGVPPADEMIRQLVQGQEAVVRTARSIFPVVDKV 127 ER+ A+G + Y H+SI + A EM++ LV + + ++ + + ++ Sbjct: 66 ERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEEN 125 Query: 128 SDEPTADLLTQRMQVHEKTAWMLRVLL 154 D TADL ++ EK WML L Sbjct: 126 QDNATADLFVGLIEEVEKQVWMLSSYL 152
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.9 bits (160), Expect = 1e-13 Identities = 36/231 (15%), Positives = 78/231 (33%), Gaps = 6/231 (2%) Query: 37 TPELPPSKPIVQATLYQLKSKSQATTQTNQKIAGEAKKTASRQTEVEQLEQKKVEQEAVK 96 T P+ ++ A + A T S TE K+ E + V+ Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVD-EAPVPPPAPATPSETTETVAENSKQ-ESKTVE 1052 Query: 97 AAEQKKADAAQKAEEAREAAEAK-KAEDAAKAAEAAKAAEAKKAAEAKKADEAKKAAEKQ 155 EQ + A+ A EAK + + E A++ K + + E +++ Sbjct: 1053 KNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 156 QADIAKKKAEDEAKKKAEEEAKKEAAEEAKKQAAEEAKKKAAEEAKKKAAEDAKKKAAAE 215 +A + +K ++ K ++ K+E +E + QA + K+ ++ A E Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT-NTTADTE 1169 Query: 216 DAKKKAAEEAKKKAAADAQKKKAQEAARKAAEDKKAQALAELLSDTTERQQ 266 K+ + ++ A + S+++ + + Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Score = 61.6 bits (149), Expect = 3e-12 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 9/201 (4%) Query: 69 AGEAKKTASRQTEVEQLEQKKVEQEAVKAAEQKKADAAQKAEEAREAAEAKKAEDAAKAA 128 + Q +V + E V A A +E AE K E Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 129 EAAKAAEAKK-AAEAKKADEAKKAAEKQQADIAKKKAEDEAKKKAEEEAKKEAAEEAKKQ 187 A E E K ++ A Q ++A+ +E K+ E K+ A E +++ Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE--TKETQTTETKETATVEKEEK 1111 Query: 188 AAEEAKKKAAEEAKKKAAEDAKKKAAAEDAKKKAAEEAKKKAAADAQKKKAQE----AAR 243 A E +K +E K ++ + K+ +E + +A + + ++ ++Q Sbjct: 1112 AKVETEKT--QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 244 KAAEDKKAQALAELLSDTTER 264 + A++ + + TT Sbjct: 1170 QPAKETSSNVEQPVTESTTVN 1190
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.1 bits (86), Expect = 1e-04 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 25/203 (12%) Query: 75 SAFLVRPIGAVAFGWLGDKVGRRASLIASITLMGAAATLIGLLPGYAQIGVWAPILLVAL 134 F P+ G L D+ GRR L+ S+ ++ P +W +L Sbjct: 55 MQFACAPVL----GALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-----LW---VLYIG 102 Query: 135 RMLQGFSAGGEIGGAASYIREWAPANRRSLYISFLPSIAQFGKGLAAAIAGLAAAWLTDP 194 R++ G + G A +YI + + R+ + F+ + FG + GL Sbjct: 103 RIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL-------- 153 Query: 195 QMADWGWRIPFLLALPLGIIGLWMRLGIEDSPEFESKKTDANKEHSAPFAELV-RDYMRP 253 M + PF A L + + + ++ +E P A M Sbjct: 154 -MGGFSPHAPFFAAAALNGLNFLTGCFLLPESH-KGERRPLRREALNPLASFRWARGMTV 211 Query: 254 LTKVMMIS-LVQNIGTYIGTVFI 275 + +M + ++Q +G +++ Sbjct: 212 VAALMAVFFIMQLVGQVPAALWV 234
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 74.0 bits (182), Expect = 4e-17 Identities = 68/343 (19%), Positives = 112/343 (32%), Gaps = 47/343 (13%) Query: 1 MNLLLTGGTGFFGKALLRHWLEIADAGLQVPSVTVLSRSPEAFLTRH-PEFSGLAWLHLH 59 M L+TG GF G + + + +AG QV + L+ + L + E H Sbjct: 1 MKYLVTGAAGFIGFHVSK---RLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFH 57 Query: 60 CGDILQ---PASFPEAAGFTHVLHAAADSTAGAQLTPLQRYIQI-VDGTRHVLDYSVRQR 115 D+ + F V + L Y + G ++L+ + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 116 IPRLLMTSSGGVYGPQPQGMEQIPEDYHGLPDPLEPAHAYSVAKRCAEHLGILYQQQFGL 175 I LL SS VYG ++P D P Y+ K+ E + Y +GL Sbjct: 118 IQHLLYASSSSVYG----LNRKMPFSTDDSVD--HPVSLYAATKKANELMAHTYSHLYGL 171 Query: 176 EVVIARCFAFVGRDLPR-DVHFAIGNFIRDALESNAIRVSGDGTPVR--SYMDQRDLAH- 231 R F G P A+ F + LE +I V G R +Y+D D+A Sbjct: 172 PATGLRFFTVYG---PWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYID--DIAEA 226 Query: 232 ---WLDVMLRQGRAGTA--------------YNVGSDKAVTIAELAHQVRDVLSPQKPVH 274 DV+ T YN+G+ V + + + D L + + Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 275 IAAAQAAVGSFRNRYVPCIDKARSELGLQ----LRHGLQQSIK 313 + Q G +G ++ G++ + Sbjct: 287 MLPLQP--GDVLETSAD-TKALYEVIGFTPETTVKDGVKNFVN 326
>FLAGELLIN#Flagellin signature. Length = 507 Score = 128 bits (323), Expect = 4e-36 Identities = 100/273 (36%), Positives = 137/273 (50%), Gaps = 4/273 (1%) Query: 2 ALTVNTNTTSLGVQKNLNRASDALGTSMTRLSSGLKINSAKDDAAGLQIATRMTSQIRGQ 61 A +NTN+ SL Q NLN++ +L +++ RLSSGL+INSAKDDAAG IA R TS I+G Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 TMAIKNANDAISIAQTAEGAMQEQTNILQRMRELAVQSRNDNNSEADRDALDKEFQSMLK 121 T A +NAND ISIAQT EGA+ E N LQR+REL+VQ+ N NS++D ++ E Q L+ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 EIDRIAGSTQLNGKNLLDGSASDMTFQVGSNTGSDNQITISLSDAMNTTGALSGLSGQSI 181 EIDR++ TQ NG +L M QVG+N G ITI L + L G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDNQ-MKIQVGANDGE--TITIDLQKIDVKSLGLDGFNVNGP 177 Query: 182 TGADSAAAEATFTAALSAIDDALNAINSTRADLGAVQNRLTSTINNLQNINENAEAARGR 241 A +++F + D N R D+ + +T + + A Sbjct: 178 KEATVGDLKSSFKNV-TGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQL 236 Query: 242 VQDTDFAAETAQLTKQQTLQQASTSILAQANQL 274 D L K + A A + Sbjct: 237 TTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 80.1 bits (197), Expect = 4e-19 Identities = 60/282 (21%), Positives = 102/282 (36%), Gaps = 9/282 (3%) Query: 5 VNTNTTSLGVQKNLNRASDALGTSMTRLSSGLKINSAKDDAAGLQIATRMTSQIRGQTMA 64 N T+ + N S + I A T Sbjct: 232 ANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKT 291 Query: 65 IKNANDAISIAQTAEGAMQEQ---TNILQRMRELAVQSRNDNNSEADRDALDKEFQSMLK 121 + N +S E T + +QS + + + ++ + Sbjct: 292 GNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNE 351 Query: 122 EIDRIAGSTQLNGKNLLDGSASDMTFQVGSNTGSDNQITISLSDAMNTTGALSGLSGQSI 181 K + + + + ++ +G + ++ + Sbjct: 352 SAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAA 411 Query: 182 TGADSAAAEATFTAALSAIDDALNAINSTRADLGAVQNRLTSTINNLQNINENAEAARGR 241 S L++ID AL+ +++ R+ LGA+QNR S I NL N N +AR R Sbjct: 412 AAKKST------ANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSR 465 Query: 242 VQDTDFAAETAQLTKQQTLQQASTSILAQANQLPSAVLKLLQ 283 ++D D+A E + ++K Q LQQA TS+LAQANQ+P VL LL+ Sbjct: 466 IEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 302 bits (776), Expect = e-104 Identities = 104/330 (31%), Positives = 205/330 (62%) Query: 10 KLSRVDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMAQMGNVHRDQVEQVMSEFVDI 69 L+ KAAILL+S+G +++V +++ +E++ + +A++ + + + V+ EF ++ Sbjct: 14 ALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKEL 73 Query: 70 VGDQTSLGVGSDAYIRKMLNQALGEDKANGLVDRILLGGNTSGLDSLKWMEPRAVADVIR 129 + Q + G Y R++L ++LG KA +++ + + + ++ +P + + I+ Sbjct: 74 MMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQ 133 Query: 130 YEHPQIQVIVVAYLDPDQAGEVLSNFDHKVRLDIVLRLSSLNTVQPAALKELNQILEKQF 189 EHPQ ++++YLDP +A +LS+ +V+ ++ R++ ++ P ++E+ ++LEK+ Sbjct: 134 QEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKL 193 Query: 190 SGNSNAARTTLGGIKRVADIMNFLDSSVEGALMDAIREIDSDLSEQIEDLMFVFNNLADV 249 + S+ T+ GG+ V +I+N D E +++++ E D +L+E+I+ MFVF ++ + Sbjct: 194 ASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLL 253 Query: 250 DDRGIQALLREVSSDVLVVSLKGADERVKDKIFKNMSKRASELLRDDLEAKGPVRVSDVE 309 DDR IQ +LRE+ L +LK D V++KIFKNMSKRA+ +L++D+E GP R DVE Sbjct: 254 DDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVE 313 Query: 310 TAQKEILTIARRMAEAGEIVLGGKGAEEMI 339 +Q++I+++ R++ E GEIV+ G E+++ Sbjct: 314 ESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 56.7 bits (136), Expect = 7e-12 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 24/204 (11%) Query: 38 PEPEPEVIAEEVEEVPLEEVQPLTLEELEAIRQEAYNEGFATGEREGFHSTQLKVRQEAE 97 P V E EE +EE +P ++L ++ +A+ +G+ G EG Q +Q + Sbjct: 17 PPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEG---RQQGHKQGYQ 73 Query: 98 EALKAKLES---------------LERLMANLMEPIAEQDTQIEKSLVHLIAHMSRQVIG 142 E L LE +++L++ + D+ I L+ + +RQVIG Sbjct: 74 EGLAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIG 133 Query: 143 RELRNDSSQITQVLREALKLLPMGADNIRIHLNPQDF----ELAKALRERHEENWRLLED 198 + D+S + + +++ L+ P+ + ++ ++P D ++ A H WRL D Sbjct: 134 QTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLH--GWRLRGD 191 Query: 199 SALLPGGCRIETAHSRIDATMETR 222 L PGGC++ +DA++ TR Sbjct: 192 PTLHPGGCKVSADEGDLDASVATR 215
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 52.9 bits (126), Expect = 1e-11 Identities = 40/140 (28%), Positives = 75/140 (53%) Query: 10 LAPVVDMAEEAERKAAQRLGHFQQQVATAQAKLAELERFREDYQLQWINRGGQGVNGSWL 69 LA + D+AE+ AA+ LG ++ A+ +L L ++ +Y+ + G+ + Sbjct: 7 LATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRW 66 Query: 70 VNYQRFLGQLETAMTQQRQSLVWHQNNLNNARGAWQQAYARVEGLRKLVQRYQDEARRAE 129 +NYQ+F+ LE A+TQ RQ L ++ A +W++ R++ + L +R A AE Sbjct: 67 INYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAE 126 Query: 130 DKREQRLLDELSQRLPRQNP 149 ++ +Q+ +DE +QR + P Sbjct: 127 NRLDQKKMDEFAQRAAMRKP 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 6e-17 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 3/137 (2%) Query: 5 QALTVLVAEDSAVDRLLLAQIVRRQGHQVFTAENGEQAVALYLERRPQLVLLDALMPVMD 64 T+LVA+D A R +L Q + R G+ V N LV+ D +MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 65 GFEAARQIKALAGEALVPIIFLTSLNEEEGLVRCLEAGGDDFMAKPYSA-VILAAKIRAM 123 F+ +IK + +P++ +++ N ++ E G D++ KP+ ++ RA+ Sbjct: 62 AFDLLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 124 DRLRRLQATVLEQRDQI 140 +R + + + Sbjct: 120 AEPKRRPSKLEDDSQDG 136
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 51.0 bits (121), Expect = 4e-09 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 259 TAKTANAVPANANPLHQPLPMNQNAWAEGLVNRVMYLSSQNLKSADIQLEPAELGRLDIR 318 T +P A P+ P+ + W + L + + Q +SA+++L P +LG + I Sbjct: 216 TPHQTQPLPTVAAPVLSA-PLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQIS 274 Query: 319 VNVAADQATQVTFISGHAGVRDALDSQVHRLRELFAQQGLAQPDVNVADQSRGQQQQQGQ 378 + V +QA Q+ +S H VR AL++ + LR A+ G+ N++ +S QQQ Sbjct: 275 LKVDDNQA-QIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAAS 333 Query: 379 AQGSNFSGVAARRSEQGGVEAVDSARPLE-QQVVVGDSAVDYYA 421 Q S A G + P+ Q V G+S VD +A Sbjct: 334 QQQQ--SQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA 375
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 257 bits (657), Expect = 2e-86 Identities = 95/324 (29%), Positives = 164/324 (50%), Gaps = 9/324 (2%) Query: 5 DLLSQDEIDALLHGVDDGLVQTESASEPGSIKS---YDLTSQDRIVRGRMPTLEMINERF 61 ++LSQDEID LL + G E A + YD D+ + +M TL +++E F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAK 121 AR T S+ LR V V V + + E++ S+ P++L ++ + PL+G ++ +D Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFEYMNS 181 + F ++D FGG G+ AK++ R+ T E V+ V+ + +++E+W ++ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181 Query: 182 EVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGF--QSDLDD 239 E NP A IV PSE VV+ T ++ G ++ +PY IEP+ L + F S Sbjct: 182 ETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRS 241 Query: 240 QDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVE---LPEHLVLRANG 296 +++ LR+ + V + + A V +L +RDIL ++ GD+I + + + VL Sbjct: 242 STTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGN 301 Query: 297 VPAFKARLGSHKGNLALQIIDPIE 320 F + G +A QI++ IE Sbjct: 302 RKKFLCQPGVVGKKIAAQILERIE 325
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 120 bits (303), Expect = 4e-38 Identities = 69/158 (43%), Positives = 96/158 (60%), Gaps = 28/158 (17%) Query: 1 MANENEITSPEDQALADEWAAALEE-----TGSAGQADIDALLGGDTGSSGPGRLPMEEF 55 M++ N + AL D WA AL E T SA A L GGD SG + Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDV--SGAMQ------ 52 Query: 56 ASSPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPL 115 ++D+I+DIPV +++E+G T + I+ LL+L QGSV+ LD LAGEPL Sbjct: 53 ---------------DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL 97 Query: 116 DVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL 153 D+L+NG LIA GEVVVV +K+G+R+TD+I+PSER+++L Sbjct: 98 DILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 268 bits (686), Expect = 4e-93 Identities = 136/244 (55%), Positives = 186/244 (76%), Gaps = 1/244 (0%) Query: 5 LRTLLTLALLLAAPLALAADPLSIPAITLSNTPDGQQEYSVSLQILLIMTALSFIPAFVI 64 +R LL++A +L + A +P IT P G Q +S+ +Q L+ +T+L+FIPA ++ Sbjct: 1 MRRLLSVAPVLLWLITPLAFA-QLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 65 LMTSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFIMAPVFERVNQDALQPYLKE 124 +MTSFTRIIIVF +LR ALG P NQ+L G+ALFLT FIM+PV +++ DA QP+ +E Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 125 QMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSKRTDIAGPDQVPLTILVPAFVTSEL 184 +++ Q+A++K PL++FML QTR++DL LF RL+ + GP+ VP+ IL+PA+VTSEL Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179 Query: 185 KTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTL 244 KTAFQIGF IFIPFLIID+V+ASVLMA+GMMM+ P I+LPFK+MLFVLVDGW L++G+L Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 245 ASSF 248 A SF Sbjct: 240 AQSF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 53.2 bits (128), Expect = 4e-13 Identities = 22/74 (29%), Positives = 38/74 (51%) Query: 7 VDLFRDALWLTTLLVAVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLITLIIAG 66 V AL+L +L + + ++GL+V +FQ TQ+ EQTL F +LL + + L + Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PWLVQKFMEYITSL 80 W + + Y + Sbjct: 65 GWYGEVLLSYGRQV 78
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 136 bits (344), Expect = 3e-41 Identities = 98/255 (38%), Positives = 153/255 (60%), Gaps = 2/255 (0%) Query: 1 MLELTDTQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPP 60 ML++T Q +W+ + PL RV A++ T PI R +P RV+L +A+ IT I P+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 LPEFDPLSLRGLLLCAEQIIVGALFGLALQLLFQAFVIAGQIVAVQMGMAFASMVDPANG 120 S L L +QI++G G +Q F A AG+I+ +QMG++FA+ VDPA+ Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 VNVTVISQFMTMLVSVLFLLMNGHLVVFEVLTESFTTLPVGSALVVNHFWELAGRMGW-V 179 +N+ V+++ M ML +LFL NGHL + +L ++F TLP+G + ++ + + G + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 180 FGAGLLLILPVIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMAIFWIGLADILSH 239 F GL+L LP+I LL +N+A G++ R APQL+IF IGFPLTL +G+++ + I Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 240 YQALASEALQWLREL 254 + L SE L ++ Sbjct: 240 CEHLFSEIFNLLADI 254
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 317 bits (815), Expect = e-109 Identities = 100/348 (28%), Positives = 183/348 (52%), Gaps = 3/348 (0%) Query: 9 DKTEEPTEKRKRTAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLAMMRMNFSL 68 +KTE+PT K+ R AR+KG++A+SKE+ + A+ +A + L+ + E +M Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLML--IPA 61 Query: 69 TRDIIVDERAMGAFLLASGKMAIWAVQPILILLFVIAFVAPIALGGFLFSGSLLQPKFSR 128 + + +A+ + + P+L + ++A + + GFL SG ++P + Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 129 MNPLSGIKRMFSMNALTELLKALAKFFVILVVAIVVLVNDRQALLSIANEPLDQAIIHSV 188 +NP+ G KR+FS+ +L E LK++ K ++ ++ +++ + LL + ++ Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 189 QVVGWSALWMAAGLLLIAAADVPFQLWQAHNKLKMTKQEVRDEYKDSEGKPEVKQRIRQL 248 Q++ + G ++I+ AD F+ +Q +LKM+K E++ EYK+ EG PE+K + RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 249 QREASQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFIALKIREIGV 308 +E R M V + V++ NPTH A+ + Y + PL+ K TD +R+I Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP-LPLVTFKYTDAQVQTVRKIAE 300 Query: 309 EHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIRQYR 356 E V IL+ LARA+Y+ ++ IPA A A+VL ++ + + Sbjct: 301 EEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEK 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 1e-24 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 6 KILIVDDFSTMRRIIKNLLRDLGFTNTDEADDGTTALPMLENGHYDFLVTDWNMPGMSGI 65 IL+ DD + +R ++ L G+ + T + G D +VTD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 DLLRKVRASDKLKSMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 125 DLL +++ + +PVL+++A+ I+A++ G Y+ KPF L I + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 27.8 bits (62), Expect = 0.043 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 14/69 (20%) Query: 13 QWAKVANVPGLRCDPPRFEGKGGYKGGLILAHGAGAPMDSGFMDEMAQRLAALGVAVVRF 72 +WAK+ P D E LA G P D + G+ + R Sbjct: 253 EWAKLVGEPSTTKDGAHVE----------LAANIGTPKDV----DGVLANGGEGIGLYRT 298 Query: 73 EFPYMAERR 81 EF YM + Sbjct: 299 EFLYMDRDQ 307
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 88.8 bits (220), Expect = 2e-22 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 12/135 (8%) Query: 134 VESQIAALASEQADRGLVMTLGDVLFDTGSADLKNSASRTVLKLVQFL-QLNPRRV-VRI 191 V + A A E + + DVLF+ A LK + +L L L+P+ V + Sbjct: 199 VVAPAPAPAPEVQTKHFTLK-SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVV 257 Query: 192 EGYTDSTGAGEENLKLSRDRAQSVADMLVDLGIDEKRLQVEGYGDQYPIEANASERGR-- 249 GYTD G+ N LS RAQSV D L+ GI ++ G G+ P+ N + + Sbjct: 258 LGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQR 317 Query: 250 -------AQNRRVEI 257 A +RRVEI Sbjct: 318 AALIDCLAPDRRVEI 332
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 132 bits (332), Expect = 1e-39 Identities = 77/250 (30%), Positives = 118/250 (47%), Gaps = 12/250 (4%) Query: 7 KIAVVTGGAMGIGAEAAVSLAKDGHHVVICDINVDAAEQFSRQLRAEGFTADACQVDVAS 66 KIA +TG A GIG A +LA G H+ D N + E+ L+AE A+A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 67 VESVRDAFSWIDSEFGRCDVLVNSAGIAKTMPFLEFDLDVFNKTMHINVTGTFMCCQLAA 126 ++ + + I+ E G D+LVN AG+ + + + T +N TG F + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 127 QIMRKNGFGRIINIAS-VAGMRAVGKGRTAYGTSKGAVIALTRQMAVELSEYGITANAIA 185 + M G I+ + S AG+ AY +SK A + T+ + +EL+EY I N ++ Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMA--AYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 186 PGPVDTPMTKELHSDT---------FRQAYSNAIPAKRYGTTQEIAGAVSYLASDVAAYV 236 PG +T M L +D + + IP K+ +IA AV +L S A ++ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 237 NGVVLPVDGG 246 L VDGG Sbjct: 247 TMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.7 bits (77), Expect = 0.001 Identities = 65/364 (17%), Positives = 119/364 (32%), Gaps = 54/364 (14%) Query: 83 LGSLVLGHFGDRIGRKKLLYLTLIIMGLSTVGIGLLPTYASIGIWAPIMLCVLRFIQGFA 142 +G+ V G D++G K+LL +II +V + ++ S+ I A RFIQG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMA-------RFIQGAG 116 Query: 143 FAGEYSGAVLMLLEHAPRRRR----GFYAAI----NNIGPVFG----------FIASAGM 184 A + ++++ + P+ R G +I +GP G ++ M Sbjct: 117 AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM 176 Query: 185 LLIVSALL---------SKEDFTAWGWRIPFIASLALLIVGVFVRSK------VPESPVF 229 + I++ + I + ++ S V +F Sbjct: 177 ITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIF 236 Query: 230 EKTAEKRAATPGDSQSPAL--RLFTRYPKQLMLVAGANICHFSTFYLFTVFALSYGQREL 287 K K P + L P + ++ G I F T F + Sbjct: 237 VKHIRK-------VTDPFVDPGLGKNIPFMIGVLCGGII--FGTVAGFVSMVPYMMKDVH 287 Query: 288 GLSNAFVLSVAM-VAICTHLVVVPFAGAMADRIGRRTMMLIGFVVTALAAFPFWHLFSTG 346 LS A + SV + + ++ G + DR G ++ IG ++ +F Sbjct: 288 QLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSV-SFLTASFLLET 346 Query: 347 EFWPMVAGSCLFMTGYGLVYGAVPSFTGEAFGPSARFTGFAMSTNVGGIVGGGTAPIVGA 406 W M + G + + + G ++ N + GT + Sbjct: 347 TSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSL-LNFTSFLSEGTGIAIVG 405 Query: 407 FLLS 410 LLS Sbjct: 406 GLLS 409
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.7 bits (66), Expect = 0.026 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 9/71 (12%) Query: 396 ESGFTPLIMSRLRSHVPIYALSPHRATQARSSLFRGVYPIAFDPASLPSETVSEAAIGEL 455 ES +PL++ R++ P+ L+ + + Y +A S A+ EL Sbjct: 34 ESYISPLLLERVQEKHPLTFLTYPSNEKLINGFANNTYSVA---------VASTYAVSEL 84 Query: 456 LKRDLVQPGDW 466 ++RDL+ P DW Sbjct: 85 IERDLLSPIDW 95
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (268), Expect = 2e-30 Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 9/254 (3%) Query: 4 LQGKRALITGGTSGIGLEAAKHFLNEGARVVVTGVNPDSIAKAKNQLGSEVLV---LQAD 60 ++GK A ITG GIG A+ ++GA + NP+ + K + L +E AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 SADVEAQKKLALDIRDHFGQLDIAFLNAGVSVWMPMEAWTEEMFDRSFDINVKGPYFLIQ 120 D A ++ I G +DI AGV + + ++E ++ +F +N G + + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 ALLPVFAN--PASVVLNTSVSVHVGDANSSVYAATKAALLNMSKTLSTELLDRGVRLNAV 178 ++ + S+V S V + + YA++KAA + +K L EL + +R N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 179 SPGPVDTPLYDKLGIPVEYREQV----NAEIVSSIPAGRFGTPEEIAKAVVYLASDESKW 234 SPG +T + L EQV + IP + P +IA AV++L S ++ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 235 TIGSEIIVDGGRRL 248 + VDGG L Sbjct: 246 ITMHNLCVDGGATL 259
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 38.1 bits (88), Expect = 8e-06 Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 21/150 (14%) Query: 3 ALLILDMQAGL--FYGPDKPWAGEALLDTLNNLLSKARSAGAPIFLARHIGPPGSPIE-- 58 LLI DMQ + E L + L ++ G P+ + PGS Sbjct: 32 VLLIHDMQNYFVDAFTAGASPVTE-LSANIRKLKNQCVQLGIPVV---YTAQPGSQNPDD 87 Query: 59 ---------PG----SLLTQLVQELVLQGDEVIFDKSRPNAFYKTALADRLRDCGTQGVV 105 PG +++ EL + D+++ K R +AF +T L + +R G ++ Sbjct: 88 RALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLI 147 Query: 106 ITGMKTQYCVDSTCRAARDLGFDAVLIADG 135 ITG+ T A A + D Sbjct: 148 ITGIYAHIGCLVTACEAFMEDIKAFFVGDA 177
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 40.5 bits (95), Expect = 6e-06 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 20/130 (15%) Query: 6 FVTGGSGFVGQHLLAALTAQGHKTWVLMRSPGNIE-----RLKEQVGQLGGNPEYLHAVE 60 VTG +GF+G H+ L GH+ + N+ LK+ +L P + + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGI----DNLNDYYDVSLKQARLELLAQPGF-QFHK 58 Query: 61 GDIS-QEGLGLSEADKERVTSAAVFFHLAAA----FSWGLTPERARTVNVQGALSVARLA 115 D++ +EG+ A F +S P N+ G L++ Sbjct: 59 IDLADREGMTDLFASGH----FERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGC 113 Query: 116 ASQRIRLLMV 125 +I+ L+ Sbjct: 114 RHNKIQHLLY 123
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 50.2 bits (120), Expect = 3e-09 Identities = 46/188 (24%), Positives = 68/188 (36%), Gaps = 20/188 (10%) Query: 11 LLLLTGTATLPSTAAAQP-PAQVQRDPSKLHLASGSALLIDLNSNQELYSSHADRVVPIA 69 L +++ ATLP A P P + + + +DL S + L + AD P+ Sbjct: 6 LCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65 Query: 70 SVTKLMTAMVVLDAKLPMDEMLTMTIANNPEMKGVYSRV---RLGSQLDRRETLLITLMS 126 S K++ VL DE L I + YS V L + E + Sbjct: 66 STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITM 125 Query: 127 SENRAANSLANAYPGGYPAFIKAMNAKARSLGMAHTR---------YVEPTGLSTQNVST 177 S+N AAN L A GG + A R +G TR P ++ +T Sbjct: 126 SDNSAANLLL-ATVGG----PAGLTAFLRQIGDNVTRLDRWETELNEALPG--DARDTTT 178 Query: 178 ARDLAKLL 185 +A L Sbjct: 179 PASMAATL 186
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 8e-13 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 18 DQAMALFAEKGFGQVSMRELAAHVGLTAGSLYHHFPSKQDLLYDLIEELYEELQATLDQA 77 D A+ LF+++G S+ E+A G+T G++Y HF K DL ++ E + + Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77 Query: 78 RRAMARGTSA-LSCLIAAHWQLHAERPLQFRLAERDL-CCLSEAQQAHLASLRKRYEAGL 135 + + L ++ + + L E C + A + ++ Sbjct: 78 QAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLES 137 Query: 136 LRLIA 140 I Sbjct: 138 YDRIE 142
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.4 bits (146), Expect = 2e-13 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 7/210 (3%) Query: 5 ARYHRMLPELRKANLVEATLVCLKRHGFQGASIRKISAEAGVSVGLISHHYAGKDELVAE 64 AR + + + ++++ L + G S+ +I+ AGV+ G I H+ K +L +E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 65 AYMAVTGRVMGLLREAMAQAAPNARERLSAFFRASFCAELLDPQ---LLDAWLAFWGAVK 121 + + L E A+ + L + + + + L++ V Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 122 TADAINQVHDHSYGEYRNELGRLLAR-LAEEEGWQGFDADLAAISLSALLDGLWLESGLN 180 + Q + E + + + L + + AAI + + GL Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 181 PGTFTPEQGVIICEAWVDGLQAGGRRRFSL 210 P +F ++ +V L +L Sbjct: 182 PQSFDLKK---EARDYVAILLEMYLLCPTL 208
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 3e-26 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Query: 3 PRVLIVDDDPLIRDLLQAYLSQEGYDVHCADTAERAEALLASQDVDLVLLDIRLPGKDGL 62 +L+ DDD IR +L LS+ GYDV A +A+ D DLV+ D+ +P ++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 TLTRELR-VRSEVGIILVTGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVR 121 L ++ R ++ +++++ +N + I E GA DY+ KP + EL+ + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 HAREAHPAPA 131 + Sbjct: 124 RRPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 1e-10 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 514 ILVVEDVALNREVAGGLLLRDGHRISFAEDAGQALQACAQRRFDLVLLDVHLPGMSGVAL 573 ILV +D A R V L R G+ + +A + A DLV+ DV +P + L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 574 CRQLRSSPGPNRDSRILALTAGVQPGQVAGYLDAGMQGVLAKPLRLDNLRKALA 627 +++ D +L ++A + G L KP L L + Sbjct: 66 LPRIKK---ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF06917#Periplasmic pectate lyase Length = 555 Score = 27.2 bits (60), Expect = 0.027 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Query: 43 GEDSQGQLSPVFAEQARQALANLK--RALASKGASLAQVFKLTLLIVEHSEARLHQWVAE 100 G+ ++ Q P F E AR+A + R L LA ++ + +A + QWV + Sbjct: 288 GDRAKRQFGPEFGEIAREANVLFRDMRPLLIDNP-LAM----LDILRQQPDAEVLQWVID 342 Query: 101 ADRAW 105 + + Sbjct: 343 GLKNY 347
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 6e-04 Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 2/108 (1%) Query: 231 ANQTAQAQQQLARLKQEQQRQARELQRQR-EDLERHQARAGRQAKHANQAKILVDRKQER 289 A T + +Q+ + E Q + ++AK +A + + Sbjct: 1029 APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS 1088 Query: 290 SQATAGKQRRDHRD-ARQTLLGKVRDAAREVEQDSAITLHAPTPQRHP 336 T Q + ++ A K + + ++ +T Q Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS 1136
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 62.6 bits (152), Expect = 8e-13 Identities = 75/336 (22%), Positives = 125/336 (37%), Gaps = 15/336 (4%) Query: 15 IGLCFLVALLEGLDLQATGIAAPHMAKAFNLSPAMLGWVFSAGLLGLLPGALIGGWLADR 74 I LC L L+ ++ P +A FN PA WV +A +L G + G L+D+ Sbjct: 17 IWLCILS-FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 75 FGRKAILIVAVLLFGGFSLGTAHAQTYDSLLI-ARLMTGLGLGAALPILIALA-SEAAPE 132 G K +L+ +++ S+ ++ SLLI AR + G G AA P L+ + + P+ Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVVARYIPK 134 Query: 133 RLRSTAVSLTYCGVPLGGAVASLIGMAGVDD-GWRTVFYVGGIAPIVIAFVLMIWLKE-- 189 R A L V +G V IG W + + I I + F++ + KE Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194 Query: 190 -SQAFRAQGVAKAGSEGVLTQLFGPQQASRTLLLWVACFFTLTVLYMLLNWLPSLLIGQG 248 F +G+ S G++ + S + L+ F + V ++ P + G G Sbjct: 195 IKGHFDIKGIILM-SVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLG 253 Query: 249 FSRPQAGAVQILFNLGGAAGSF--LTGRMMDRGFAGRAVLIAYAGMLASLAGLGLSSSFG 306 + P V + G F + MM I + + + G Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 307 LMLLAGFTAGYCAIGGQLVL----YALAPTLYSTQV 338 +L+ Y G L + L +T Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW 349
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 30.3 bits (68), Expect = 0.024 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 453 IDFDVVDHVARARLDRRWDAITG--RLGLVYDLTSNVSLYTQY 493 I + + D V A+ W+ G LGL Y +T +V LYTQ Sbjct: 219 IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQV 261
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 78.0 bits (192), Expect = 1e-17 Identities = 74/399 (18%), Positives = 152/399 (38%), Gaps = 53/399 (13%) Query: 18 RANVLTAKVILLLAALAAISNLSTNIILPAFPEMARQFNVSSQKLGLTLSSFFITFAFAQ 77 ++N+ ++++ L L+ S L+ ++ + P++A FN ++F +TF+ Sbjct: 7 QSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGT 66 Query: 78 LLVGPLADRYGRKRLVVGGLMIFVVGTFWAA-NAATFDMLILGRVIQAIGVCAAAVLARA 136 + G L+D+ G KRL++ G++I G+ + F +LI+ R IQ G A L Sbjct: 67 AVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMV 126 Query: 137 IARDLYEGENLARALSLTMIAAATAPGFSPLIGSMLNTTLGWRALFVVVGMSAILIALFY 196 + EN +A L A G P IG M+ + W L ++ +I + + Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI--PMITIITVPF 184 Query: 197 VRGIGETLPSRRRVTQSVPAVLIAYG---------------------------------- 222 + + + + +L++ G Sbjct: 185 LMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVT 244 Query: 223 ------KLASNRLFILPALATSLLMSGLFASFAAAPSILMEGMGLNSLQVG--LYFAATV 274 L N F++ L ++ + + P ++ + L++ ++G + F T+ Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 275 FVVFAAGLAAPRLAHRWGSRAITLSGLATACLAGALLLIGPSNPSFGWYSLSMVLFLWG- 333 V+ G L R G + + L+ + L + W+ +++F+ G Sbjct: 305 SVII-FGYIGGILVDRRGPLYVLN--IGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGG 361 Query: 334 -MGIANPLGTALTMTPFGKEAGLASALL---GFLTMAIG 368 + T ++ + +EAG +LL FL+ G Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTG 400
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 446 bits (1148), Expect = e-142 Identities = 236/1045 (22%), Positives = 433/1045 (41%), Gaps = 59/1045 (5%) Query: 8 LSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEMQDL 67 ++ +R L +++ AG LA +L A+ P +++ +PGA AQ +QD Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 68 VAEPLEKRMQELRWYDRTETYS-RPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQAKL 126 V + +E+ M + + S G ++ Q T P Q + + A L Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLA---TPL 117 Query: 127 MPAGVIGPML-NDEFSDVTFAVYALKA-KGEPQRQLVRD--AETLRQQLLHVPGVKKVNI 182 +P V + ++ S V + + + D A ++ L + GV V + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 183 IGEQ-AERIFVSFSHDRLATLGITPQDIFSALDNQNALSPAGSVET------QGPHVVVR 235 G Q A RI++ D L +TP D+ + L QN AG + Q + + Sbjct: 178 FGAQYAMRIWLDA--DLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 235 Query: 236 VDGAFDQLTKIRETPVVAQ--GRALKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMR 293 F + + + G ++L DVA VE G E+ R +G+PA LGI + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVI-ARINGKPAAGLGIKLA 294 Query: 294 EGWNGLDLGKALEAETAKINESMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLV 353 G N LD KA++A+ A++ P GM + D + S+ E + F A+++V LV Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 354 CFLSMG-WRVGVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIE 412 +L + R ++ AVP+ L F ++AA G + + +T+ ++LA+GLLVDDAI+ +E Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 413 MMV-VKMEEGYDRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIV 471 + V ME+ +A+ + S ++ +V + F+P F + G + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 472 GIALIASWVVAVAFTPYLGVKLL----PRIKTIEGGHAAIYNTRHY---NRFRTLLGWVI 524 A+ S +VA+ TP L LL +GG +NT N + +G ++ Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 525 AHKWLVASTVVSTFVAAVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIRVE 584 V+ + F P D+ L +Q+P G + E+T +V Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 585 SWLRQQEEAKIVTTYIGQGPPRFFLAMAPELPDPSFAKIVV--LTENQGARE---ALKHR 639 + + E+A + + + G + + + + A + + E G A+ HR Sbjct: 595 DYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHR 649 Query: 640 LREAASE-----GLAPGAQVRVTQLVFGPYSPYPVAYRVMGPDASQ--LRQIAARVQSVL 692 + + + V + + +G DA Q+ Sbjct: 650 AKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA--- 706 Query: 693 QASSMMKTVNTDWGPLVPTLHFSLNQDRLQAVGLTSASVSQQLQFLLTGVPITSVREDIR 752 Q + + +V + ++Q++ QA+G++ + ++Q + L G + + R Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 753 SVQVVGRAAGQIRLDPAQIESFTLVGSNGQRVPVSQIGDVSIRMEDPILRRRDRTPTMTV 812 ++ +A + R+ P ++ + +NG+ VP S P L R + P+M + Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 813 RGDIAEGLQPPDVSTAIWKDLQPIVRQLPAGYKIEMAGSIEESAKASQAIVPLLPIMIAL 872 +G+ A G D + + + +LPAG + G + + L+ I + Sbjct: 827 QGEAAPGTSSGDAMALM----ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 873 TLLIIILQVRSISAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTL 932 L + S S V V L PLG++GV+ LF Q + +VGL+ G+ +N + Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 933 ILIGQIDHNQL-EGLAPFDAVVEATVQRARPVLLTALAAILAFIPLTHSVFWGT-----L 986 +++ EG +A + A R RP+L+T+LA IL +PL S G+ + Sbjct: 943 LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAV 1002 Query: 987 AYTLIGGTFVGTIMTLVFLPAMYSI 1011 ++GG T++ + F+P + + Sbjct: 1003 GIGVMGGMVSATLLAIFFVPVFFVV 1027 Score = 83.7 bits (207), Expect = 2e-18 Identities = 61/319 (19%), Positives = 130/319 (40%), Gaps = 14/319 (4%) Query: 712 LHFSLNQDRLQAVGLTSASVSQQLQF----LLTGVPITSVREDIRSVQVVGRAAGQIRLD 767 + L+ D L LT V QL+ + G + + + A + + + Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK-N 242 Query: 768 PAQIESFTL-VGSNGQRVPVSQIGDVSIRMED-PILRRRDRTPTMTVRGDIAEGLQPPDV 825 P + TL V S+G V + + V + E+ ++ R + P + +A G D Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 826 STAIWKDLQPIVRQLPAGYKIEMAGSIEESAKAS-QAIVPLLPIMIALTLLIIILQVRSI 884 + AI L + P G K+ + S +V L I L L++ L ++++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 885 SAMVMVFLTSPLGLIGVVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLE 944 A ++ + P+ L+G +L FG + G++ G+L+ + ++++ ++ +E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 945 -GLAPFDAVVEATVQRARPVLLTALAAILAFIPL-----THSVFWGTLAYTLIGGTFVGT 998 L P +A ++ Q ++ A+ FIP+ + + + T++ + Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 999 IMTLVFLPAMYSIWFKIHP 1017 ++ L+ PA+ + K Sbjct: 483 LVALILTPALCATLLKPVS 501
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 7/104 (6%) Query: 67 VSGKILQRLVDTGQTVKRAQPLMRLDPVDLN-----LQARAQQEAVTAARARA--KQTSD 119 + + + +V G++V++ L++L + Q+ Q + R + + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 120 DEARYRGLVAEGAVSASSYDQIKAAADAAKAQLSAAQAQADVAR 163 ++ L E S +++ K Q S Q Q Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.8 bits (160), Expect = 1e-15 Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 12/197 (6%) Query: 17 DVRDQIIQAAMEHFAHYGYDKTTVSDLAKSIGFSKAYIYKFFESKQAIGEVICSSRLALI 76 + R I+ A+ F+ G T++ ++AK+ G ++ IY F+ K + I + I Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNI 70 Query: 77 MQRVEAATGNAPSASEKLRRLFRNIAEAGADLFFQERKLYDIAAVASRDQ-----WSSVK 131 + P + R I + E + + + + V+ Sbjct: 71 GELELEYQAKFPGDPLS---VLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQ 127 Query: 132 SHEANIS----RLIQEILIQGRSAGEFERKTPVDEATLAIFLIMRPYVNAALLQHNLDTL 187 + N+ I++ L A A + + + + L L Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDL 187 Query: 188 EDAVIQLPALILRSLAP 204 + A++L Sbjct: 188 KKEARDYVAILLEMYLL 204
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 74.7 bits (183), Expect = 3e-17 Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 1/174 (0%) Query: 123 LRGKVVVITGASSGIGRATAHAFACKGARLVLAARDEEALFEVLDECTDCGTDAVAITTD 182 + GK+ ITGA+ GIG A A A +GA + + E L +V+ A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 183 VTSSDQMRALAAQAAEFGHGRIDIWVNNAGVGVVGSFEKTPLEAHEQVIQTDLVGYLRGA 242 V S + + A+ G IDI VN AGV G E E + G + Sbjct: 66 VRDSAAIDEITARIER-EMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 243 HVALPYFKAQRSGILINTLSLGSWVAQPYAAAYSASKFGLRGLTDALRGELTEF 296 Y +RSG ++ S + V + AAY++SK T L EL E+ Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.001 Identities = 18/80 (22%), Positives = 28/80 (35%) Query: 93 QSNDSGQMNDQGGATGSGAPADGMGTGDGGTDDNGTNNTGGDGTDSDSGTGSHGAGSNGT 152 + +++G + G G G G+ + NN G G+ S G NG Sbjct: 7 RGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGG 66 Query: 153 DAGVGGSGSNGSGSRAGSGT 172 G G GS G+ + Sbjct: 67 GNGNSGGGSGTGGNLSAVAA 86 Score = 27.4 bits (60), Expect = 0.037 Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 131 TGGDGTDSDSGTGSHGAGSNGTDAGVGGSGSNGSGSRAGS 170 +GGDG ++G S NG G+G G GS S Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSS 41
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.4 bits (118), Expect = 1e-08 Identities = 70/331 (21%), Positives = 121/331 (36%), Gaps = 27/331 (8%) Query: 21 AVIAGLLLFYLLFTGYFMLRPVRETMGVAGGVENLQWLFTGTFIATLA-----CLPLFGW 75 +I L L G ++ PV + N G +A A C P+ G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 LASRVQRRHILPWTYGFFASNLLLFAALLAGNPDDLWTARAFYIWLSVFNLLTISLAWSV 135 L+ R RR +L + A + + A A L+ R ++ T ++A + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMA--TAPFLWVLYIGRI----VAGITGATGAVAGAY 119 Query: 136 LADLFSTAQGKRLFGLLAAGASLGGLSGPLFGTLLVAPLGHAGLLVLAAVFLLGSIGATL 195 +AD+ + R FG ++A G ++GP+ G L+ HA AA+ L + Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 196 FLQRWRARQPIAIQTKHQDARPLGGNPFTG---ATAVLRSPYLLGIALFVVLLASVSTFL 252 L P + + + + R NP A + L+ + + L+ V L Sbjct: 180 LL-------PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 253 YFEQARIVSETFTDRTRQTQVFGLIDTVVQALAILTQVFLTGRLARRLGVGVLLVAVPLV 312 + + F G+ L L Q +TG +A RLG L+ + Sbjct: 233 W---VIFGEDRF---HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286 Query: 313 MAVGFLWLALAPVFALFVVVMVVRRAGEYAL 343 G++ LA A + +MV+ +G + Sbjct: 287 DGTGYILLAFATRGWMAFPIMVLLASGGIGM 317
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 6e-04 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 77 LHLHEISVRQEAQGKGVGRRLLQQVVDAGRCAGVRELTL-TTFVDVPWNAPFYARFGFEM 135 + +I+V ++ + KGVG LL + ++ + L L T +++ FYA+ F + Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINIS-ACHFYAKHHFII 148
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.8 bits (124), Expect = 3e-09 Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 5/179 (2%) Query: 22 WVVFLGFLIIALDGLDVAIIGFIAPQLKSDWGLDAQSLGPVLSAALIGLALGALIAGPLA 81 W+ L F + L+ ++ P + +D+ S V +A ++ ++G + G L+ Sbjct: 18 WLCILSFFSV----LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 82 DRYGRKAVLLCSVLLFGLWTLASAFSPN-LEALVALRFLTGLGLGAAMPNASTLVSEYAP 140 D+ G K +LL +++ ++ + L+ RF+ G G A +V+ Y P Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP 133 Query: 141 ARSRSLLITLAFCGFSLGAAAGGFVSAWMIPNLGWRSVLALGGVLPLMVLPLLYWRLPE 199 +R L ++G G + + + W +L + + + V L+ E Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKE 192
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 159 bits (404), Expect = 4e-50 Identities = 83/253 (32%), Positives = 136/253 (53%), Gaps = 9/253 (3%) Query: 12 GLESAVCVVTGAAGGIGAALAAALVEQQAHVVLLDRDLDKCRELAATLGEHSAGEVSALA 71 G+E + +TGAA GIG A+A L Q AH+ +D + +K ++ ++L + A A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL-KAEARHAEAFP 63 Query: 72 CDIADPASVEQAAAQVQALHGRCDVLVNNASVLRPGALDTLSLEQWNQVLAVNLSGYLLC 131 D+ D A++++ A+++ G D+LVN A VLRPG + +LS E+W +VN +G Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 132 AQAFGRSMLDCGQGRIVHVASIAAHYPQPNSGAYSAAKAGVSMLSRQIAVEWGPRGVRSN 191 +++ + M+D G IV V S A P+ + AY+++KA M ++ + +E +R N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 192 AVCPGLIRTPLSAAFYADPQVARRRSAMTANQ--------RIGEPQDIAEAVLFLASRRA 243 V PG T + + +AD A + + ++ +P DIA+AVLFL S +A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 244 DYINGAELTVDGG 256 +I L VDGG Sbjct: 244 GHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%) Query: 40 RQFFPSDDAYASLLMALATFGVGFFMRPVGGVLLGMYSDRKGRKAAMQMIIRLMTVSIAM 99 R S+D A + LA + M+ +LG SDR GR+ + + + V A+ Sbjct: 33 RDLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 100 IAFAPDYLAIGMAAPLLIVVARMLQGFATGGEYASATAFLVESAPAHRKGLYGSW 154 +A AP ++ + R++ G TG A A A++ + + + + Sbjct: 90 MATAP--------FLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGF 135 Score = 32.9 bits (75), Expect = 0.002 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 285 LMTLVIPLSGALSDRLGRRPVLMA----FTLTFFVMVYPLYVWV 324 + P+ GALSDR GRRPVL+ + + +M ++WV Sbjct: 55 MQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWV 98
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 103 bits (258), Expect = 9e-25 Identities = 152/614 (24%), Positives = 236/614 (38%), Gaps = 79/614 (12%) Query: 203 GDVLLSSGNDRFTWDGGRIGGRVDAGP-GDDTALLKGLTPEVLSITLDGGEGNDSLTFDA 261 G+V+ + G RF + + AG ALL + PE + +TL GG Sbjct: 341 GNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVAT 400 Query: 262 SQPTGGAHYVNWERVALNNGSR----------LVLDDTLVMGDSNSSTGSLALDASSRIT 311 P+ + VAL + +R L +D+ + NS+ G+L L + + Sbjct: 401 ELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSV- 459 Query: 312 SRQGVITAFAPGQRAAISNAGTLDLTAGNDAMGRLRIEGDYTGINGTLRLNSVLAGDGAA 371 F A T++ AG+ G R+N D Sbjct: 460 -------DFQQPAEAGRFKVLTVNTLAGS----------------GLFRMNVFA--DLGL 494 Query: 372 SDRLVVSRGAIAGSTQVLINNLNGAGAATAQNGIQVVEARDGATSTATAFVQTQRLSAGA 431 SD+LVV + A +G ++ + N +G+ A+A + V A T T + ++ G Sbjct: 495 SDKLVVMQDA-SGQHRLWVRN-SGSEPASANTLLLVQTPLGSAA-TFTLANKDGKVDIGT 551 Query: 432 YDYRLFKGGVTAGSENSWYLRSTLVAPPAPAPVPAPGEPPVIAPAVTPPVAAPAPGQAEL 491 Y YRL A W L APPAP P P PG P P Q E Sbjct: 552 YRYRL-----AANGNGQWSLVGA-KAPPAPKPAPQPGPQP----------PQPPQPQPEA 595 Query: 492 PAPVQGESLPLYRPEVPVYAAAPRGAAIIARQALGTFHQRQGDQLLLQGESALPASWGQA 551 PAP L G A A ++ +L L ++ WG+ Sbjct: 596 PAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPDAGGA--WGRG 653 Query: 552 YGGTLRQQWSGTVSPSLDGDLYGFKVGQDLYAKVGDNGYRQHVGIYVSHSRLDADVKGFA 611 + RQQ D + GF++G D V G R H+G ++R D G Sbjct: 654 FAQ--RQQLDNRAGRRFDQKVAGFELGAD--HAVAVAGGRWHLGGLAGYTRGDRGFTGD- 708 Query: 612 LAVHDRSVGDLKLDGDSVGTYWTLVGPQGAYLDAVLQYTRLDGRARSERGDTLNLDG--- 668 G D VG Y T + G YLDA L+ +RL+ + D + G Sbjct: 709 --------GGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYR 760 Query: 669 -HAWTASLESGYPITLSEHWRVEPQAQLIAQKV--ALDSASDGVSRISHDAQVELTGRLG 725 H ASLE+G T ++ W +EPQA+L + A++G+ R+ + + GRLG Sbjct: 761 THGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGL-RVRDEGGSSVLGRLG 819 Query: 726 LRLEGAFTGSSGRLLQPFAQVNLWHGDGGRDTLSFDDADKIKTDYRYTSVQLESGVVAQV 785 L + + GR +QP+ + ++ G T+ + +T+ R T +L G+ A + Sbjct: 820 LEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGI-AHRTELRGTRAELGLGMAAAL 878 Query: 786 NEALSLHGGVQYTA 799 SL+ +Y+ Sbjct: 879 GRGHSLYASYEYSK 892
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 64.1 bits (156), Expect = 2e-12 Identities = 37/176 (21%), Positives = 78/176 (44%), Gaps = 9/176 (5%) Query: 628 IEAATNEVVREANHRMLLLVYLAVTLFCLVTFRSWRATLVAILPLMLTSVLCEALMVAMG 687 ++ + +EVV+ L + V L + ++ RATL+ + + + + A++ A G Sbjct: 333 VQLSIHEVVKT-----LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 688 IGVKVATLPVIALGVGIGVDYALYLL-SVQLHYQRAGLSLAHAYQKALAFTGRVVGLVGI 746 + T+ + L +G+ VD A+ ++ +V+ L A +K+++ + + + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAM 447 Query: 747 TLAAGVAGWAW---SPIKFQADMGLLLTFMFLWNMLGALVLIPALSHFLLRGQGAP 799 L+A A+ S + + ++L AL+L PAL LL+ A Sbjct: 448 VLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAE 503 Score = 37.1 bits (86), Expect = 3e-04 Identities = 23/150 (15%), Positives = 63/150 (42%), Gaps = 4/150 (2%) Query: 254 AVLTSLVIIYCYTRCVRSTLLVVVCSLTAVVWQLGIVAWLGYAIDPYSILVPFLIFAIGV 313 A++ +++Y + + +R+TL+ + ++ I+A GY+I+ ++ L + V Sbjct: 347 AIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 314 SHAAQKMNGILQ-DIGRGTHRQIAARYTFRRLFVAGVTALLADAVGFAVLMLIDI---PV 369 A + + + + + A + ++ A V + + F + + Sbjct: 407 DDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAI 466 Query: 370 IQDLAITASIGVAVLIFTSLLLMPVALSYV 399 + +IT +A+ + +L+L P + + Sbjct: 467 YRQFSITIVSAMALSVLVALILTPALCATL 496
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 59.9 bits (145), Expect = 7e-12 Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 2/186 (1%) Query: 22 RYAWVVFALTFGVLISDYMSRQVLNAVFPLLKGEWALTDSQLGLLSGIVALMVGLLTFPL 81 R+ ++ L S ++ VLN P + ++ + ++ L + T Sbjct: 11 RHNQILIWLCILSFFS-VLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 82 SLLADRFGRVRSLVLMAVLWSLATLGCALAENYPQMFI-ARFLVGVGEAAYGSVGIAVVV 140 L+D+ G R L+ ++ ++ + ++ + I ARF+ G G AA+ ++ + VV Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129 Query: 141 AVFPRDMRSTLAGAFMAGGMFGSVLGMALGGVLAQHLGWRWAFAGMALFGLVLAMLYPLI 200 P++ R G + G +G A+GG++A ++ W + + + + L L+ Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL 189 Query: 201 VKEGRI 206 KE RI Sbjct: 190 KKEVRI 195
>PF06704#DspF/AvrF protein Length = 129 Score = 28.3 bits (63), Expect = 0.021 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 10/46 (21%) Query: 142 GDSVLLHAAAGGVGLIVAQWARLLGLNVIGTVSTEAKAEVARAHGC 187 + V+ H G A +LL LN +VAR HG Sbjct: 49 SEMVIFHCRVGRSPDRAADLQKLLSLNF----------DVARMHGS 84
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.1 bits (236), Expect = 2e-25 Identities = 74/258 (28%), Positives = 115/258 (44%), Gaps = 24/258 (9%) Query: 12 RVALVTGSTSGIGAAIARVLSRAGYAVVLHSRNSADTGRAMVAEMKQAIY---LQADLAV 68 ++A +TG+ GIG A+AR L+ G + N + + + +A + AD+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 69 ETDRVRLVNEAIAAWGQLDVLVNNAGISRVIAHGDLASASSTVWHELNEVNVVAPFHLVA 128 + G +D+LVN AG+ R G + S S W VN F+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRP---GLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 129 LAESALRDAARYRRAGCVVNISSHAGTRPKGASIPYAVSKAALNHMTRLLALTLGP-DIR 187 + D RR+G +V + S+ P+ + YA SKAA T+ L L L +IR Sbjct: 126 SVSKYMMD----RRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 188 VNAVAPGLVDTPL-----TAEWTEAQ------ELWRTRAPMRRAASPDDIAKAVVMLV-- 234 N V+PG +T + E Q E ++T P+++ A P DIA AV+ LV Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 235 ESDYLTGEILLSDGGLNL 252 ++ ++T L DGG L Sbjct: 242 QAGHITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.8 bits (191), Expect = 5e-19 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 2/185 (1%) Query: 7 VLITGASSGIGATYAERFARRGHDLILVARDTSRMESLALRLRKESHVAVEVLPADLTSS 66 ITGA+ GIG A A +G + V + ++E + L+ E+ A E PAD+ S Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFPADVRDS 69 Query: 67 ADLSVLESRL-RDDANIGVLINNAGMAQSGGFLDQSAEAIERLVTLNTTALTRLAAAIAP 125 A + + +R+ R+ I +L+N AG+ + G S E E ++N+T + + +++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 126 RLAQSGTGAIVNVGSVVGFAPEFGMSIYGATKAFVLFLSQGLSQELSPKGVYVQAVLPAA 185 + +G+IV VGS P M+ Y ++KA + ++ L EL+ + V P + Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 186 TRTEI 190 T T++ Sbjct: 190 TETDM 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.6 bits (134), Expect = 2e-10 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 48/196 (24%) Query: 8 RILLIDDMPTIHEDFRKILAPAKAQNTELDEMEGLLFGEQIKNDRPVFELDSAYGGEEGL 67 IL+ DD I + L+ A +++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAG------------------------YDVRITSNAATLW 40 Query: 68 GLLKRALQASKPYALAFVDMRMPGGWDGAQTIEHLWEEDPLLQVVVCTAYSDY-SWDELL 126 + A+ L D+ MP + + + + P L V+V +A + + + + Sbjct: 41 RWI-----AAGDGDLVVTDVVMPDE-NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKAS 94 Query: 127 DRLQAHDRLLILKKPFDNIEVQQMASTLLTKWEMTQRASLKMHQLEQRVERRTQQLTQA- 185 A+D L KPFD E+ + RA + + ++E +Q Sbjct: 95 -EKGAYDYLP---KPFDLTELI----------GIIGRALAEPKRRPSKLEDDSQDGMPLV 140 Query: 186 --SEALQQEIEERKQL 199 S A+Q+ +L Sbjct: 141 GRSAAMQEIYRVLARL 156
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 33.1 bits (75), Expect = 0.002 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%) Query: 125 ESLEEQGEAVITSAHEMGGDWR------VIEQRIAADVHY---RQAFKDAYPDAVTKDNI 175 ESL+E+ EA + GGDW + +++ ++DV ++ PD T Sbjct: 188 ESLKERQEAE-KNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPHVQPDIATTTTD 246 Query: 176 LSALADYQRTLLTPGARFDRYLQGDTEALTLE 207 + L R LL F ++ GD E L +E Sbjct: 247 IQGLPPEARDLLDERGNFSKFTLGDMEMLDVE 278
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 114 bits (287), Expect = 9e-30 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 12 RPTVLLVDDEESILNSLRRLLRGQPYDVKLATSGEQALAQMAEGPVDLVMSDARMPGMDG 71 T+L+ DD+ +I L + L YDV++ ++ +A G DLV++D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 72 ATLLAQINQHHPSTVRILLTGYADPSAIIKAVNDGQIHRYISKPWNDDELLMTLRQALDH 131 LL +I + P ++++ IKA G + Y+ KP++ EL+ + +AL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIGRALAE 121 Query: 132 QHSERERQRLELLARR 147 +R +LE ++ Sbjct: 122 P--KRRPSKLEDDSQD 135
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 26.0 bits (57), Expect = 0.032 Identities = 11/31 (35%), Positives = 13/31 (41%) Query: 5 GKIYWEWANSALHSRNYDERLPCGTLINIQA 35 G + W WA+S LH L IQA Sbjct: 11 GHVSWLWASSPLHRNWPVSLFAINVLPAIQA 41
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.016 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 7/38 (18%) Query: 352 GPNGIGKTTLLRTLVG-----EMTPDAGSVKWTDSAEV 384 G GIGK+TL+ TLVG + D G+ K DS E Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGK--DSYEQ 638
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.7 bits (98), Expect = 3e-06 Identities = 78/367 (21%), Positives = 122/367 (33%), Gaps = 36/367 (9%) Query: 18 QILSIVFYTFIAFLCIGLPIAVLPSYVHDQLGFGAVIA--GVTIGLQYLATLLSRPFAGR 75 ++ I+ + + IGL + VLP + D + V A G+ + L L P G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 VADTLGGKQAIRFGLLGIAGCGVLTLLSAWTLTLPLLSLALLLGGRLLLGIAQGLIGVAT 135 ++D G + + L G A V + A L +L + GR++ GI VA Sbjct: 66 LSDRFGRRPVLLVSLAGAA---VDYAIMATAPFLWVLYI-----GRIVAGITGATGAVAG 117 Query: 136 LSWGISQVGPEHT-ARVISWNGIASYGAIAIGAPIGVLAVDGLDFSVLGP-----ALLVL 189 I+ + AR + + G +G L FS P AL L Sbjct: 118 AY--IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMG---GFSPHAPFFAAAALNGL 172 Query: 190 ATLALLVLRKRPDVVVVRGERL----PFWSAFGRVAPCGLGLTLAS------IGYGTLTT 239 L L R R P S + +A +G Sbjct: 173 NFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 240 FVTLYYLERGWAGA--AWCLSAFGVCFIISRLLFVNAVNRFGGYNVAVAC-MATEVLGLG 296 +V W L+AFG+ +++ + V G A+ M + G Sbjct: 233 WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI 292 Query: 297 LLWLAPSPPWALVGAGLTGFGLSLVYPALGVEAIKQVPSSSRGAGLGAYAVFFDMALAIA 356 LL A A L G + PAL +QV +G G+ A + +I Sbjct: 293 LLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLT-SIV 350 Query: 357 GPVMGAV 363 GP++ Sbjct: 351 GPLLFTA 357
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 94.1 bits (234), Expect = 3e-23 Identities = 83/337 (24%), Positives = 125/337 (37%), Gaps = 37/337 (10%) Query: 54 GAAVTVAGVVWVLLARPWGRAADRLGRRRILLLGSAGFTLAYWLLCLFVEGALRWMPGAT 113 G + + ++ A G +DR GRR +LL+ AG + Y + W+ Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI---MATAPFLWV---- 98 Query: 114 LAFIGLMIARGCIGAFYAAIPVGCNALIADHVEPQRRARAMASLGAANAVGLVVGPALAA 173 +IG ++A G GA A A IAD + RAR + A G+V GP L Sbjct: 99 -LYIGRIVA-GITGATGA----VAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG 152 Query: 174 LLARHSLSLPFHIMSLLPATAFLVLFFTLKPQALPHSHAPSPVRLNDP---------RLR 224 L+ S PF + L FL F L H P+R R Sbjct: 153 LMGGFSPHAPFFAAAALNGLNFLTGCFLLPE---SHKGERRPLRREALNPLASFRWARGM 209 Query: 225 RP----LLVAFSAMLSVTVSQIIVGFFALDRLHLGPAEAAQAAGIALTTVGVALMLAQVI 280 + V F L V + F DR H GI+L G+ LAQ + Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT----TIGISLAAFGILHSLAQAM 265 Query: 281 LRQL---EWPPLKMIRVGATVSALGFACGSLATTAPWLWACYFVAAAGMGFVFPAFSALA 337 + + + +G G+ + AT + + A+G G PA A+ Sbjct: 266 ITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAML 324 Query: 338 ANAMQASEQGATAGSIGAAQGMGAVIGPLAGTLVYAL 374 + + QG GS+ A + +++GPL T +YA Sbjct: 325 SRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Score = 37.1 bits (86), Expect = 1e-04 Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 263 AGIALTTVGVALMLAQVILRQLEWPPLKMIRVGATVSALGFACGSLATTAPWLWACYF-- 320 A AL A +L + R P L + GA V A TAP+LW Y Sbjct: 50 ALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA------TAPFLWVLYIGR 103 Query: 321 VAAAGMGFVFPAFSALAANAMQASEQGATAGSIGAAQGMGAVIGPLAGTLVYALDPRLPF 380 + A G A A+ E+ G + A G G V GP+ G L+ P PF Sbjct: 104 IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF 163 Query: 381 LAVAVLLLL 389 A A L L Sbjct: 164 FAAAALNGL 172
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 17/184 (9%) Query: 1 MRYSNEHKQQTRERLLASSGALAKRGGFASTGVAGLMKAIGLTGGAFYNHFPSKDDLFTE 60 R + + Q+TR+ +L + L + G +ST + + KA G+T GA Y HF K DLF+E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 VVRQELSNSPLARLACQGA----NRERLGRCLQQYLSLAH------------LRNAEGGC 104 + SN L Q L L L E Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 105 PLPPLGVEIARADTPVREVAEHWLVELHQAWS-TTLEDEQLAWVLISQCVGALLVGRMLA 163 + + + E L +A + A +++ + L+ + A Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 164 SESV 167 +S Sbjct: 182 PQSF 185
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.2 bits (68), Expect = 0.022 Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 6/123 (4%) Query: 191 NATATASANQDGPGLIVNNSADRTYRVDTITITKSASGSSSKEGSFNSTDDRSSSSSFSV 250 + + T +A Q G ++ + + S S S++ + D + + Sbjct: 578 SYSLTKNAWQKGRDQMLALNV--NIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLA 635 Query: 251 AGAQSASSSGSSGWNASGSQSSNASGSHNSSASGSFGWDAS-GSASGSHSASS---SASL 306 + + ++ + G+ S+ + + G+A+ +S S Sbjct: 636 GVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYY 695 Query: 307 AAS 309 S Sbjct: 696 GVS 698
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.005 Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 21 ALYAAADPQVEALKQELIELKRRYEAQQQALMVLEQRVRQVEEAPAAAQPKR 72 A A + Q + L L+R +A ++A LE +++EE ++ R Sbjct: 295 AEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASR 346
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1058 bits (2737), Expect = 0.0 Identities = 404/567 (71%), Positives = 471/567 (83%), Gaps = 2/567 (0%) Query: 3 RISRQAYADMFGPTVGDRVRLADTALWVEVEKDFTIYGEEVKFGGGKVIRDGMGQGQML- 61 R+SR AYA+MFGPTVGD+VRLADT L++EVEKDFT +GEEVKFGGGKVIRDGMGQ Q+ Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 AAEAMDLVLTNALIIDHWGIVKADIGIKHGRIAVIGKAGNPDVQPGVNVPVGPGTEVIAA 121 A+D V+TNALI+DHWGIVKADIG+K GRIA IGKAGNPD+QPGV + VGPGTEVIA Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAG 123 Query: 122 EGKIVTAGGVDSHIHFICPQQVDEALNSGVTTFIGGGTGPATGTNATTCTPGPWYLARML 181 EGKIVTAGG+DSHIHFICPQQ++EAL SG+T +GGGTGPA GT ATTCTPGPW++ARM+ Sbjct: 124 EGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMI 183 Query: 182 QAADSLPINIGLLGKGNASRPDALREQIGAGAVGLKLHEDWGSTPAAIDCCLGVAEEMDI 241 +AAD+ P+N+ GKGNAS P AL E + GA LKLHEDWG+TPAAIDCCL VA+E D+ Sbjct: 184 EAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDV 243 Query: 242 QVAIHTDTLNESGCIEDTLAAIGDRTIHTFHTEGAGGGHAPDIIRAAGQANVLPSSTNPT 301 QV IHTDTLNESG +EDT+AAI RTIH +HTEGAGGGHAPDIIR GQ NV+PSSTNPT Sbjct: 244 QVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPT 303 Query: 302 LPYTINTVDEHLDMLMVCHHLDPSIAEDVAFAESRIRRETIAAEDILHDMGAFAMTSSDS 361 PYT+NT+ EHLDMLMVCHHL P+I ED+AFAESRIR+ETIAAEDILHD+GAF++ SSDS Sbjct: 304 RPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDS 363 Query: 362 QAMGRVGEVVLRTWQVAHQMKLRRGPLAPDTPYSDNFRVKRYIAKYTINPALTHGIGHEV 421 QAMGRVGEV +RTWQ A +MK +RG L +T +DNFRVKRYIAKYTINPA+ HG+ HE+ Sbjct: 364 QAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEI 423 Query: 422 GSVEVGKLADLVLWSPAFFAVKPALVLKGGMIVTAPMGDINGSIPTPQPVHYRSMFGALG 481 GS+EVGK ADLVLW+PAFF VKP +VL GG I APMGD N SIPTPQPVHYR MFGA G Sbjct: 424 GSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYG 483 Query: 482 AARHATRMTFLPQAAMDRGLAEALNLRSLIGVVNGCR-RVRKPDMVHNTLQPLIEVDAQT 540 +R + +TF+ QA++D GLA L + + V R + K M+HN+L P IEVD +T Sbjct: 484 RSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPET 543 Query: 541 YQVRADGELLVCEPASELPLAQRYFLF 567 Y+VRADGELL CEPA+ LP+AQRYFLF Sbjct: 544 YEVRADGELLTCEPATVLPMAQRYFLF 570
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.1 bits (104), Expect = 8e-07 Identities = 68/405 (16%), Positives = 138/405 (34%), Gaps = 45/405 (11%) Query: 12 VVFLLLIGIVNYLDRSALSIANTSIQKDMMISPSQMGILLSAFSIAYAFAQLPMGMIIDR 71 +++L ++ + L+ L+++ I D P+ + +AF + ++ G + D+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 72 LGSK--IALGASLLGWSVAQAAFGMVNSFAGFMGLRVLLGIGEAPMFPSAAKALSEWFDA 129 LG K + G + + G + F+ + R + G G A ++ + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGH-SFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 130 NERGTPTGVVWSSTCLGPCLAPPLLTLFMVNFGWRGMFIITGVIGVVLALCWLTFYKSKA 189 RG G++ S +G + P + + W + +I +I ++ + K + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP-MITIITVPFLMKLLKKEV 193 Query: 190 RFLAELAAEGKPLPSERQAAAATVTAPKASYFAGWL------------------------ 225 R +G L S SY +L Sbjct: 194 RIKGHFDIKGIILMS---VGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDP 250 Query: 226 DLFKHRSTWGAVLGFMGVIYMLWLHLTWLPGYFEREHGLDLYKTAWVVSLAYGFGAAGTI 285 L K+ VL + + ++ +P + H L + V+ G I Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP---GTMSVI 307 Query: 286 IAGRFCDWLVRRGMSVLGSRKFSVITGLVLAALFTLPLSFVTGLTGCIMLLCLALFSINM 345 I G LV R G I G+ ++ L SF+ L + + + + Sbjct: 308 IFGYIGGILVDR----RGPLYVLNI-GVTFLSVSFLTASFL--LETTSWFMTIIIVFVLG 360 Query: 346 ASATAWMIVNTIVDS----QRVASFGSIQNFGGYIAGSVAPIVTG 386 + +++TIV S Q + S+ NF +++ + G Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVG 405
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.3 bits (89), Expect = 5e-05 Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 18/197 (9%) Query: 245 QMFRDRQIWLAIVVYFVHQITIYTVIFFLPGIIGTYAALSPFQVGLLTAVPWIAAAMGAA 304 + ++ + ++ + T+ + +P ++ LS ++G + P + + Sbjct: 251 GLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFG 310 Query: 305 TFPRLATSPRRCRTLLFFGLLTMAAGLLLASL---ANSFIGLIGFSLTALMLFVVQSIIF 361 + R +L G+ ++ L AS S+ I L +++I Sbjct: 311 YIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIS 370 Query: 362 VFPSSRLSGSALAAGLAFVTTCGLFGGFVGPSVMGL---------------IEQTTGSTR 406 SS L AG++ + G +++G ++Q+T Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYS 430 Query: 407 NGLWIIAALLVCAALVS 423 N L + + ++V + LV+ Sbjct: 431 NLLLLFSGIIVISWLVT 447
>PF05043#Transcriptional activator Length = 493 Score = 28.8 bits (64), Expect = 0.033 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 1 MNRNDLRRVDLNLLIVFETLMHERSVTRA--AEKLFLGQPAISAALSRLRNLFDDPLFVR 58 +++ R+++L L ++FE H+R R+ AE L + A+ LS +++ F D +F Sbjct: 5 LSKKSHRQLEL-LELLFE---HKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHS 60 Query: 59 TGRSM 63 + + Sbjct: 61 STNGI 65
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 2e-06 Identities = 18/90 (20%), Positives = 40/90 (44%) Query: 82 RVSEVRPQASGILQKRMFVEGAEVKQGEQLYQIDPRTYEALLARAEASLLTAQNLARRYE 141 R E++P + I+++ + EG V++G+ L ++ EA + ++SLL A+ RY+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 142 RLLDTNAISQQQYDDAMATWKQAQAEAQMA 171 L + +++ + Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEV 184
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1205 bits (3119), Expect = 0.0 Identities = 584/1033 (56%), Positives = 772/1033 (74%), Gaps = 1/1033 (0%) Query: 1 MSRFFIDRPIFAWVLAIIAMLAGALSLTKMPISQYPNIAAPAVSIQVVYPGASAKTVQDT 60 M+ FFI RPIFAWVLAII M+AGAL++ ++P++QYP IA PAVS+ YPGA A+TVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQLNGLDGFRYMAAESASDGSMNIIVTFEQGTNPDIAQVQVQNKLQLATPRLPE 120 V QVIEQ +NG+D YM++ S S GS+ I +TF+ GT+PDIAQVQVQNKLQLATP LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQRQGLRVVKYQMNFFMVVGLVDKTGKMTNFDLGNLIASQLQDPISRINGVGDFLLFGS 180 EVQ+QG+ V K ++ MV G V T D+ + +AS ++D +SR+NGVGD LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 PYAMRIWLDPGKLNSYQLTPGDVAQAIREQNVQVSSGQLGGLPTRSGVQLNATVVGKTRM 240 YAMRIWLD LN Y+LTP DV ++ QN Q+++GQLGG P G QLNA+++ +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 TTPAEFEEILVKVKADGSQVRVKDLGRVVLASENFAISAKYRGQDSAGLGLRLASGGNLL 300 P EF ++ ++V +DGS VR+KD+ RV L EN+ + A+ G+ +AGLG++LA+G N L Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ETVKAVKAELEKQKAYLPEGVEVIYPYDTSPVVEASIDSVVHTILEAVVLVFLVMFLFLQ 360 +T KA+KA+L + + + P+G++V+YPYDT+P V+ SI VV T+ EA++LVFLVM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 SLRATIIPTLAVPVVLLAAFALLPYFGISINVLTMYAMVLAIGLLVDDAIVVVENVERLM 420 ++RAT+IPT+AVPVVLL FA+L FG SIN LTM+ MVLAIGLLVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 HDEGLSPLEATRKSMGQISGALVGIGMVLSAVFVPMAFFGGSAGIIYKQFAVTIVICMSL 480 ++ L P EAT KSM QI GALVGI MVLSAVF+PMAFFGGS G IY+QF++TIV M+L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALIFTPALCATILKAPENDAHHEKKGFFGWFNRSFDRNSARFERGVGGILKHRGRY 540 SVLVALI TPALCAT+LK + H K GFFGWFN +FD + + VG IL GRY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LLIFALITAGTGYLFTQIPKAFLPSEDQGLMMTEVRMPLNASAERTEVVLQEVKDYLLKE 600 LLI+ALI AG LF ++P +FLP EDQG+ +T +++P A+ ERT+ VL +V DY LK Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EGQLVDHVMTVNGFNFAGRGQNSGLVLVVLKDWAARQAAGEDVLSVAERANARFARIKDA 660 E V+ V TVNGF+F+G+ QN+G+ V LK W R +V RA +I+D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 TVMAFVPPAVLEMGNAMGFDLYLQDNLGLGHESLMAARNQFLELAAENPS-LRAVRPNGK 719 V+ F PA++E+G A GFD L D GLGH++L ARNQ L +AA++P+ L +VRPNG Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 DDEPQFQVKIDDEKARALQVSIASINDTMSAAWGSMYVNDFIDLGRVKRVYIQGVDSSRI 779 +D QF++++D EKA+AL VS++ IN T+S A G YVNDFID GRVK++Y+Q R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 780 APEDFDKWYVRNALGEMVPFSAFATGEWIHGSPKLERYGGISAVNILGEPAPGFSTGDAM 839 PED DK YVR+A GEMVPFSAF T W++GSP+LERY G+ ++ I GE APG S+GDAM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 840 IAIAQIMQQLPSGIGLSYNGLSYEEIRTGDQAPMLYALTVLIVFLCLAALYESWSVPMSV 899 + + +LP+GIG + G+SY+E +G+QAP L A++ ++VFLCLAALYESWS+P+SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 900 ILVVPLGIFGAVLATLWRGLEADVYFQVGLMTTVGLSAKNAILIIEFAKELYEKEGVPLV 959 +LVVPLGI G +LA + DVYF VGL+TT+GLSAKNAILI+EFAK+L EKEG +V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 960 KAAIEAARLRLRPIIMTSLAFTFGVLPMARATGAGAGSQHSIATGVVGGMITATVLAVFF 1019 +A + A R+RLRPI+MTSLAF GVLP+A + GAG+G+Q+++ GV+GGM++AT+LA+FF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1020 VPLFYVVVVKVFE 1032 VP+F+VV+ + F+ Sbjct: 1021 VPVFFVVIRRCFK 1033
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 113 bits (283), Expect = 2e-31 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 1/155 (0%) Query: 3 DRASVIYILDDDNAVLEALSSLVRSIGLSVECFSSASVFLNDVNRSACGCLILDVRMPEM 62 A+++ + DDD A+ L+ + G V S+A+ + ++ DV MP+ Sbjct: 2 TGATIL-VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 63 SGLDVQRQLKELGEQIPIIFISGHGDIPMAVKAIKAGAVDFFTKPFREEELLGAIRAALK 122 + D+ ++K+ +P++ +S A+KA + GA D+ KPF EL+G I AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 123 LAPQQRSNAPRVSELKENYESLSKREQQVLKFVLR 157 ++ S S+ S Q++ + + R Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 7e-17 Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 3/140 (2%) Query: 449 DQPRVLIVEDNPDMRGFIKDCLSS-DYQVYVAPDGAKALELMSNMPPDLLITDLIMPVMS 507 +L+ +D+ +R + LS Y V + + A ++ DL++TD++MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 508 GDMLVHQVRKKNELSHIPIMVLSAKSDAELRVKLLSESVQDFLLKPFSAHELRARVSNLV 567 L+ +++K +P++V+SA++ +K + D+L KPF EL + + Sbjct: 62 AFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 568 SMKVAGDALRKELSDQGDDI 587 + + ++ S G + Sbjct: 120 AEPKRRPSKLEDDSQDGMPL 139
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.3 bits (169), Expect = 5e-16 Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 14/259 (5%) Query: 3 LEGEVALVTGGGAGLGRAIVDRYVAEGARVAVLDKSAAGLEAL---RKLHGDAIVGVEGD 59 +EG++A +TG G+G A+ ++GA +A +D + LE + K D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 VRSLDSHREAVARCVEAFGKLDCLVGNAGVWDYLTQLVDIPDDLISEAFEEMFEVNVKGY 119 VR + E AR G +D LV AGV + L E +E F VN G Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR-----PGLIHSLSDEEWEATFSVNSTGV 120 Query: 120 ILAAKAALPALYQSKGSAIFTV-SNAGFYPGGGGVLYTAGKHAVIGLIKQLAHEWGPR-I 177 A+++ + + +I TV SN P Y + K A + K L E I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 178 RVNGIAPGGILGSDLRGL-KSLDLQDKSISTFPLDDMLKSVLPTGRAATAEEYAGAYVFF 236 R N ++PG L + ++ I + K+ +P + A + A A +F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSL--ETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 237 ATRGDTVPLTGSVLNFDGG 255 + G +T L DGG Sbjct: 239 VS-GQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 1e-13 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 17/186 (9%) Query: 8 RRTQAERREETRSRIIEAAISELLHNGYAGIRVDKVAIAAKVSRGAQSHHFPTKESLVLA 67 R+T+ + +ETR I++ A+ G + + ++A AA V+RGA HF K L Sbjct: 3 RKTK-QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 68 ALETLY----QASTEVSMKVIDNLAS--EDVLDALMQESAKFYLGPNFTIAMSLLNLGDS 121 E + E K + S ++L +++ + M ++ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLES---TVTEERRRLLMEIIFHKCE 118 Query: 122 NPELRKKVRIMARKYRLPIEKAWLDALTRSGLDE------EPARTVLSITQSVYRGMTTR 175 V+ R L ++ + ++ R I + G+ Sbjct: 119 FVGEMAVVQQAQRNLCLES-YDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177 Query: 176 RFLRND 181 Sbjct: 178 WLFAPQ 183
>cloacin#Cloacin signature. Length = 551 Score = 27.8 bits (61), Expect = 0.010 Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 62 SEDGSLDGYEVECSWHFGRFDIRTGHACAMP 92 S+ G L+GY H G FD +TG+ P Sbjct: 511 SQHGELEGYRASDGQHLGSFDPKTGNQLKGP 541
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 103 bits (259), Expect = 9e-29 Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 16/263 (6%) Query: 7 NALPLEGQVAVVTGGAHGIGLGIVERLLGLGARVTASDIDESGLSLL--CERLAAKHADA 64 NA +EG++A +TG A GIG + L GA + A D + L + + A+HA+A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 65 IAVHAADLSEEQGAQGLHRAAVERFGSVQILVNCAGGGVIRPFLEH--TPETLKATIDRN 122 D + R G + ILVN A GV+RP L H + E +AT N Sbjct: 62 FPADVRD--SAAIDEITARIE-REMGPIDILVNVA--GVLRPGLIHSLSDEEWEATFSVN 116 Query: 123 LWTALWCSRVFLPDMLARQYGRIINIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFA 182 SR M+ R+ G I+ +G++ AAY ++K T L E A Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 183 RQGVTVNTVAPCAVNTE----VWVRIKNANPEL---AQRFLDVIPMGRVGEIEEVASMVG 235 + N V+P + T+ +W A + + F IP+ ++ + ++A V Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 236 YLAQPEAAFVTGQVISVNGGSTM 258 +L +A +T + V+GG+T+ Sbjct: 237 FLVSGQAGHITMHNLCVDGGATL 259
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 0.004 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 265 KGVQRDVGGYAVALALSMETVFDVAPGQVMFSTSDVGWAVGHSYNVYGPLIVGATSLLYE 324 KGV + A+ A +M T D+ + H Y + +I ++LY Sbjct: 104 KGVGTALLHKAIEWAKE------NHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYS 157 Query: 325 GLPTHPDAGIWWSL 338 PT + I+W Sbjct: 158 NFPTANEIAIFWYY 171
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 108 bits (272), Expect = 9e-31 Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 16/256 (6%) Query: 3 LKDKVAIVTGAATGIGNAIVRSYLAEGAKVVIADVKGAEAAAAELGEDL----ALGVFAD 58 ++ K+A +TGAA GIG A+ R+ ++GA + D + A AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 59 VSDPDSTKQMAKAALDRFGKIDVLVNNAGIFTGLNYVPMESISVADWDKLYSVNVKGPWL 118 V D + ++ G ID+LVN AG+ L + S+S +W+ +SVN G + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGV---LRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 119 CASAVSAAMREGGGGKIINIASVIAHIGAPFMLHYVSSKGAVAAMTRAMAREFATTKAGI 178 + +VS M + G I+ + S A + M Y SSK A T+ + E A + I Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA--EYNI 180 Query: 179 SVNSISPGYTHS--ENALANAQQHEQ--FEGVSASMR---AIDRPQVPADIAGVALWLAS 231 N +SPG T + + +L + + +G + + + + P+DIA L+L S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 232 DEASYVNGQNIVVDGG 247 +A ++ N+ VDGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.3 bits (169), Expect = 8e-17 Identities = 33/188 (17%), Positives = 69/188 (36%), Gaps = 10/188 (5%) Query: 8 RRTQAERAMETQGKLIAAALGVLREKGYAGFRIADVPGAAGVSRGAQSHHFPTKLELLLA 67 R+T+ + A ET+ ++ AL + ++G + + ++ AAGV+RGA HF K +L Sbjct: 3 RKTK-QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 68 TFEWLYEQITERSRARLAKLKPED-----DVIQQMLDDAAEFFLDDDFSISLDLIVAADR 122 +E I E AK + +++ +L+ + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 123 DPALREGIQRTVERNRFVVEDMWLGVLVSRGLSRD--DAEDILWLIFNSVRGLAVRSLWQ 180 + A+ + QR + + + L + + ++ + GL W Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN--WL 179 Query: 181 KDKERFER 188 + F+ Sbjct: 180 FAPQSFDL 187
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 30.1 bits (67), Expect = 0.034 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%) Query: 291 KNEFKLNQPGAAGWLTVDHLWLVSKTATDRLRAYLLAQSVDGIPSSNIAMFDELQSHGLV 350 +N + +++PG AG +TA R +L S D P SN A E S G + Sbjct: 364 ENGYPIHRPGIAG----------VETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTI 413 Query: 351 DE 352 DE Sbjct: 414 DE 415
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 54.8 bits (132), Expect = 1e-09 Identities = 46/343 (13%), Positives = 114/343 (33%), Gaps = 38/343 (11%) Query: 171 EMASMADLENISLSADGELWIHKTLHALDMDPIKVE--AQIMGNEQMVGGVVSADKK--V 226 + + ++L + D ++++ A++ + + + K Sbjct: 239 RFKNPEEFGKVTLRVNS-----------DGSVVRLKDVARVELGGENYNVIARINGKPAA 287 Query: 227 AMVVAELGTKQDDAQAQLRAYHQVREIIAKYQAAHPEFTDEVFIAGMPIFIAAQQEIIDH 286 + + A A L ++ +A+ Q P+ ++ F+ + Sbjct: 288 GLGIK----LATGANA-LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 342 Query: 287 DLAMLFPIVFLLVTSLLVFFFRKPLGVVLPLFNILFCTIWTLGLMALLRVPMDLLTSVLP 346 L +VFL++ F + ++P + + T ++A ++ LT Sbjct: 343 TLFEAIMLVFLVM----YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM 398 Query: 347 VFLFTICCADAIHVMAEYYEQLNSGKS-FREANRETQRLMVTPVVLTTVTTIATFL-IST 404 V + DAI V+ + K +EA ++ + +V + A F+ ++ Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458 Query: 405 TNNIVSI--RNFGVFMSIGLTAALIISLLLIPAWISIWGKDAVPRKVQLKASLISHYLVV 462 R F + + + +++++L+L PA + K + K + Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTT 518 Query: 463 F----------CAWLIRWRKPVLLVTLPLLAMMTVFTFKVDIE 495 F ++ LL+ ++A M V ++ Sbjct: 519 FDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSS 561 Score = 52.5 bits (126), Expect = 6e-09 Identities = 36/203 (17%), Positives = 88/203 (43%), Gaps = 18/203 (8%) Query: 670 PANLQVTHAGTPYIWTGVLQEITQGQVLSFSLALLAVTLMMMFWLKSVRLGILGMLTLLT 729 P ++V PY T +Q V + A++ V L+M +L+++R ++ + + Sbjct: 318 PQGMKVL---YPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPV 374 Query: 730 TSVTVYGSMYLLDIELNIGTTLVTFLVVG-VVDYAVHLLSRI-KMLVQKGIEIDEAILAA 787 + + + +N T L +G +VD A+ ++ + +++++ + EA + Sbjct: 375 VLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKS 434 Query: 788 MQGVGRSTVVNVVIFSMGFVALLFSA------YKPVIDLGVLVILALSSSGFMTILLVTL 841 M + + V ++ S F+ + F Y+ + ++ A++ S + ++L Sbjct: 435 MSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ---FSITIVSAMALSVLVALILT-- 489 Query: 842 ISPWFFASIVPQPAVQEGEQPGG 864 P A+++ + + E GG Sbjct: 490 --PALCATLLKPVSAEHHENKGG 510 Score = 49.8 bits (119), Expect = 5e-08 Identities = 36/199 (18%), Positives = 82/199 (41%), Gaps = 19/199 (9%) Query: 649 SVAGDYQAMLDKLDAWLAINKPANLQVTHAGTPYIWTGVLQEITQGQVLSFSLALLAVTL 708 + +GD A+++ L + L PA + G Y + +++ + V L Sbjct: 834 TSSGDAMALMENLASKL----PAGIGYDWTGMSY----QERLSGNQAPALVAISFVVVFL 885 Query: 709 MMMFWLKSVRLGILGMLTLLTTSVTVYGSMYLLDIELNIGTTLVTFLVVGVVDY-AVHLL 767 + +S + + ML + V V + L + + ++ + +G+ A+ ++ Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 768 SRIK-MLVQKGIEIDEAILAAMQGVGRSTVVNVVIFSMGFVALLFS------AYKPVIDL 820 K ++ ++G + EA L A++ R ++ + F +G + L S A + Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA---V 1002 Query: 821 GVLVILALSSSGFMTILLV 839 G+ V+ + S+ + I V Sbjct: 1003 GIGVMGGMVSATLLAIFFV 1021 Score = 49.5 bits (118), Expect = 6e-08 Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 6/153 (3%) Query: 288 LAMLFPIVFLLVTSLLVFFFRKPLGVVLPLFNILFCTIWTLGLMALLRVPMDLLTSVLPV 347 L I F++V L + V + + + L L D+ V + Sbjct: 872 APALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLL 931 Query: 348 FLFTICCADAIHVMAEYYEQL--NSGKSFREANRETQRLMVTPVVLTTVTTIATFL---I 402 + +AI ++ E+ + L GK EA R+ + P+++T++ I L I Sbjct: 932 TTIGLSAKNAI-LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAI 990 Query: 403 STTNNIVSIRNFGVFMSIGLTAALIISLLLIPA 435 S + G+ + G+ +A ++++ +P Sbjct: 991 SNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPV 1023
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.9 bits (238), Expect = 8e-26 Identities = 76/258 (29%), Positives = 114/258 (44%), Gaps = 13/258 (5%) Query: 5 RTIVITGAANGIGRAVAESFAAQAEHLLILLDRDLATLQSWVTEGEFAARIETHQANIAD 64 + ITGAA GIG AVA + A+Q H+ + + + A E A++ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 LASLQLLFKGLADRVGFVDVLVNSAGVCDENEPEDL--DNWHKVISINLNGTFYVTSLCL 122 A++ + + +G +D+LVN AGV L + W S+N G F + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 123 PLMA--EGGRIVNMSSILGRAGKVRNTAYCASKHGIIGMTKALALDLAPRRITVNAILPA 180 M G IV + S + AY +SK + TK L L+LA I N + P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 181 WIDTPMLQ----GELAAQARIAGISHEQILRNAKKKLPLRRFIQGDEVAAMVRYLASPQA 236 +T M E A+ I G S E K +PL++ + ++A V +L S QA Sbjct: 189 STETDMQWSLWADENGAEQVIKG-SLETF----KTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 237 SGVTAQSLMIDGGAGLGM 254 +T +L +DGGA LG+ Sbjct: 244 GHITMHNLCVDGGATLGV 261
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (340), Expect = 7e-41 Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 12/249 (4%) Query: 4 KIAVVTGGSRGIGKAIVLALAGAGYQVAFSYVRDEASAAALQTQVEGLGRECLAVQCDVK 63 KIA +TG ++GIG+A+ LA G +A E + + + R A DV+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSL-KAEARHAEAFPADVR 67 Query: 64 EAPSIQAFFERVEQRFERIDLLVNNAGITRDGLLATQSLSDITEVIQTNLVGTLLCCQQV 123 ++ +I R+E+ ID+LVN AG+ R GL+ + S + N G + V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 124 LPCMMRQRSGCIVNLSSVAAQKPGKGQSNYAAAKGGVEALTRALAVELAPRNIRVNAVAP 183 MM +RSG IV + S A P + YA++K T+ L +ELA NIR N V+P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 184 GIVSTDMSQAL---VGAHEQEI-----QSRLLI--KRFARPEEIADAVLYLA-ERGLYVT 232 G TDM +L EQ I + I K+ A+P +IADAVL+L + ++T Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 233 GEVLSVNGG 241 L V+GG Sbjct: 248 MHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 364 bits (937), Expect = e-126 Identities = 140/366 (38%), Positives = 197/366 (53%), Gaps = 14/366 (3%) Query: 1 MQLLTLPPSPSLATSIRATAQVFEDARSQALLAHLQQVAPSEASVLIIGETGTGKELVAR 60 + PS S V A Q + L ++ ++ +++I GE+GTGKELVAR Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 61 HIHNLSGRRNGPFVAVNCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLD 120 +H+ RRNGPFVA+N A L+E+ELFGHEKGAFTGA G FE+ GGTLFLD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 121 EIGDLPMAIQVKLLRVLQEREVVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYY 180 EIGD+PM Q +LLRVLQ+ E +G R I DVR+VAATN L ++I G FREDLYY Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 181 RLNVVSLQLYPLRERPGDILPLTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRE 240 RLNVV L+L PLR+R DI L RHF++ + G R EA + ++ WPGN+RE Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 241 LENVIHHTLLVCRNGLVQDDDLRLSH--------LRIERQDKSPVSTAESAEEQLLRAFQ 292 LEN++ + ++ + + + +S +++ EE + + F Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 293 RLFEEQA-----GSLHEKVEDTLLRSAYRFCHCNQVHTASLLGLSRNITRARLIAIGELV 347 + + ++E L+ +A NQ+ A LLGL+RN R ++ +G V Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSV 477 Query: 348 VNRRRP 353 R Sbjct: 478 YRSSRS 483
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 32.3 bits (73), Expect = 0.002 Identities = 40/127 (31%), Positives = 51/127 (40%), Gaps = 36/127 (28%) Query: 219 ATSGQARYLLAPWLLAGFRMNFPESLATRDTDRRELGPTLVLGTHDSYGRLYVLAQQRLP 278 A S A +L+ PWL A R P + H S RL V P Sbjct: 71 AVSAGAEHLVVPWLAATER------------------PFELPVPHLSCRRLCV----ENP 108 Query: 279 LPGSLLRRG-LDWALDARGGLLRNSLGHV---------LLRRPLRDVLGLSRTRVPLL-- 326 +PGS L G L + RGGL L + +LR PLR V+G S T+ LL Sbjct: 109 VPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQRSLLGR 168 Query: 327 --VGEAL 331 +G+ L Sbjct: 169 IGIGDVL 175
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.0 bits (174), Expect = 1e-16 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 3 IVLVDDHAVVRQGYASLLRAVLPLVQVREAASGEEALARVQEQVPNLVIMDFGLPGISGL 62 I++ DD A +R L VR ++ + +LV+ D +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ETTRRLRQRLPQLRVLFFSMHDELPLVRQALDAGASGYLTKNSAPEVLIEAVQRVLAGHA 122 + R+++ P L VL S + +A + GA YL K LI + R LA Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 YIEQPLATQLACLSQQSTSDPRLQRMTQR 151 L +Q + + Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRV 152
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 42.2 bits (99), Expect = 9e-07 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 139 PAAGLLMALPALLLVAFMLSALGLLLSNAIRQLENFAGVMNFVIFPLFFLSSALYPLWKM 198 LL ALP + L ++LG++++ + F VI P+ FLS A++P+ ++ Sbjct: 143 QWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQL 202 Query: 199 REASQWLYWLCAANPFTHAVELVRFALYER----LNLLALAVCLGLTALFTLLAIL 250 Q P +H+++L+R + + A+C+ + F L L Sbjct: 203 PIVFQTAARFL---PLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTAL 255
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.6 bits (100), Expect = 2e-06 Identities = 71/409 (17%), Positives = 143/409 (34%), Gaps = 38/409 (9%) Query: 13 ILFMLFLVTTINYADRATIAIAGSSLQKDLGIDAVTLGYIFSAFGWAYVAGQIPGGWLLD 72 IL L +++ + + + ++ + D + ++ +AF + G G L D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 73 RFGSKNVYAFSIFTWSLFTLLQGFVGGLPVAWAVVTLFTLRFLVGFAEAPSFPGNARIVA 132 + G K + F I +++ GFVG + ++ RF+ G A +VA Sbjct: 75 QLGIKRLLLFGIIINCFGSVI-GFVGHSFFSLLIMA----RFIQGAGAAAFPALVMVVVA 129 Query: 133 AWFPTQERGTASAIFNSAQYFATALFAPIMGWIVFSFGWEHVFVVM--GVLGIIFSMVWL 190 + P + RG A + S + I G I W ++ ++ ++ + F M L Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL 189 Query: 191 KTIYNPRQHPRISQSELEHIEQNGGLVDMDQKRGSDGPKWGYIKQLLTSRM--------- 241 K + H I L + ++ S + + Sbjct: 190 KKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 242 ---------LLGVYLGQYCINAITYFFLTWFPVYLVQERGMTILKAGFIASLPA-VCGFI 291 ++GV G I F++ P + ++ + G + P + I Sbjct: 250 PGLGKNIPFMIGVLCG-GIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 292 GGVLGGVISDWLLRRGNSLTFSRKLPIVCGLLLST---TMVFCNYVDAEWMVVGFMTLAF 348 G +GG++ D RRG + + LS T F + +M + + + Sbjct: 309 FGYIGGILVD---RRGP-----LYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG 360 Query: 349 FGKGIGALGWAVVADTSPKQIAGLSGGLFNTFGNIASITTPIVIGYIIS 397 + +V+ + +Q AG L N ++ T ++G ++S Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>PF05043#Transcriptional activator Length = 493 Score = 31.1 bits (70), Expect = 0.005 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 12/130 (9%) Query: 2 DELRKIDLNLLLALHALLSERHVTRAALRLHRSQPAVSHALAQLRKHFDDPLLVRQGGGM 61 R+++L LL H H + A L+ ++ AV L+ ++ F D + G+ Sbjct: 8 KSHRQLELLELLFEHK--RWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGI 65 Query: 62 VL-TARAQSLAQPLQDAL--SNLDSLLATPLFDPARA----QRRFRLSLSDYASRII--L 112 + + S S+L F+ + F +S S RII + Sbjct: 66 RIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSSS-LYRIISQI 124 Query: 113 PHLLRHLRQV 122 +++ Q Sbjct: 125 NKVIKRQFQF 134
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 27.1 bits (60), Expect = 0.018 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 10/44 (22%) Query: 40 AWLIAGALVFCGLALLFALANL----------IRAERKGGRATL 73 AW++AG A + A+A L I +R G A++ Sbjct: 35 AWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASI 78
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.7 bits (69), Expect = 0.033 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 41/188 (21%) Query: 621 NFLGLLTSGGGGGLNAGMLWFNILSLKTAYNSLQKSDAPEYT-----LGLASSVFGVIG- 674 N L G G +G ILS +A L +DA T + L + V G +G Sbjct: 231 NLPNLDNIGAGLDTVSG-----ILSAISASFILSNADADTRTKAAAGVELTTKVLGNVGK 285 Query: 675 AAAATLVSVRATQKAVMLRLSATAPGMAFGNGVIKFLSSNL-FARLA------------- 720 + +++ RA Q LS +A + S L F +A Sbjct: 286 GISQYIIAQRAAQG-----LSTSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYS 340 Query: 721 ------GYPAIAFSLFSDLSKGMRQLDSGNSTAGGY--TLAGGVTMA-TGSVVALEAGLA 771 GY SL + K +D+ +T +++ G++ A T S+V Sbjct: 341 QRFKKLGYDGD--SLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSAL 398 Query: 772 VAGVTSIV 779 V VT I+ Sbjct: 399 VGAVTGII 406
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 53.0 bits (127), Expect = 3e-11 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 6/105 (5%) Query: 43 ESVRDDDDWLARVSAVASSSTAQAFFAHWNNEACGLVWCKASDVESSVVEIFQMWVAPDA 102 + DDD ++ V AF + N G + +++ +++E + VA D Sbjct: 48 KQYEDDDMDVSYVE----EEGKAAFLYYLENNCIGRIKIRSNWNGYALIE--DIAVAKDY 101 Query: 103 RGLGAGSALLERAITWAEDRDAACVRLGVTIADSPAMHLYKASGF 147 R G G+ALL +AI WA++ + L + A H Y F Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 40.8 bits (95), Expect = 2e-06 Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 24/194 (12%) Query: 4 MIVGAGRGLGRALLEGLGKPGDTLIGVSRKQPSDLALAPGIDLQ-----WVDADLAKPTA 58 I GA +G+G A+ L G + V + + + AD+ A Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS-A 70 Query: 59 AVAQIADRAPAD---LDVLIYNVGIWEEHAFSEHYAFLDD-SDESITRLVEVNITATLLL 114 A+ +I R + +D+L+ G+ + SDE VN T Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVL-------RPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 LKRLVPKLLGAPRPQLILTGSTSALRQSGRPEV---AFGASKFALNGMADALREGFRGDN 171 + + ++ ++ GS A G P A+ +SK A L N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPA----GVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 172 LAVTVLHLGYLNTD 185 + ++ G TD Sbjct: 180 IRCNIVSPGSTETD 193
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (287), Expect = 5e-37 Identities = 34/89 (38%), Positives = 55/89 (61%) Query: 5 TKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGR 64 K ++ ++ E L K+++ V+ F + L + E+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 65 NPKTGEEIPITARRVVTFRPGQKLKARVE 93 NP+TGEEI I A +V F+ G+ LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.6 bits (121), Expect = 5e-09 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 2/155 (1%) Query: 56 LSDIGRSFDMSTAQVGLMLTIYAWIVALASLPMMLLTRNIERRRLLLFVFLVFIVSHVLS 115 L DI F+ A + T + ++ + L+ + +RLLLF ++ V+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 116 WLSQSFAMLLV-SRIGIALAHAVFWSITASLAVRVAPPGQQAKALGLLATGTTLAMVLGI 174 ++ SF LL+ +R A F ++ + R P + KA GL+ + + +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 175 PLGRVVGEALGWRITFLSIGGVALATMLCLMKSLP 209 +G ++ + W L I + + T+ LMK L Sbjct: 157 AIGGMIAHYIHWSYLLL-IPMITIITVPFLMKLLK 190
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.0 bits (96), Expect = 6e-06 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 1/137 (0%) Query: 2 TAQTMRPGRVLFALAIGAFGIGTTEFTPMGLLPVIAQGVEVSIPSAGMLITAYAIGVMVG 61 + +R ++L L I +F E LP IA S + TA+ + +G Sbjct: 6 SQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIG 65 Query: 62 APIMTLLFSRFGKRAALMALMAIFTLGNLLSSLSPDYYTLL-ASRLVTSLNHGAFFGLGA 120 + L + G + L+ + I G+++ + +++LL +R + AF L Sbjct: 66 TAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVM 125 Query: 121 VVAASVVPKEKQASAVA 137 VV A +PKE + A Sbjct: 126 VVVARYIPKENRGKAFG 142
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 4e-05 Identities = 54/273 (19%), Positives = 93/273 (34%), Gaps = 17/273 (6%) Query: 58 AQIGWIALVYQVTASLLQPWVGMFTDKHPQPYLLPAGMVVTLVGIALLAFAGSYEMLLVA 117 A G + +Y + P +G +D+ + +L + V A++A A +L + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 118 AAVVGVGSATFHPEASRVARMASGGR----FGTAQSTFQVGGNTGSALGPLLTAAIIIPH 173 V G+ AT + +A + G FG + F G G LG L+ PH Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM--GGFSPH 160 Query: 174 GQPAIAWFMLAAALAVLVLLRVTGWSVRHGQARLKRFAGQQAPGLSRGAMWRAVVVIAVL 233 A F AAAL L L + +R ++A W + + Sbjct: 161 -----APFFAAAALNGLNFLTGCFL-LPESHKGERRPLRREALNPLASFRWARGMTVVAA 214 Query: 234 MFAKFVYIASFTNF----FTFYLIEHFGLSVQHSQLYLFVFLAAVALG-TFAGGPVGDRI 288 + A F + + + + F + L F +L GPV R+ Sbjct: 215 LMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARL 274 Query: 289 GRKAVIWVSFLGVAPFALALPHANLAWTAVLAV 321 G + + + + + L A W A + Sbjct: 275 GERRALMLGMIADGTGYILLAFATRGWMAFPIM 307
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 514 bits (1325), Expect = e-172 Identities = 152/811 (18%), Positives = 269/811 (33%), Gaps = 80/811 (9%) Query: 58 TLYLDLVVNQMPR----VELIPVQQRAG-RLYLDSELLRAAGVSLPGNPQGEVALDS--- 109 T +D+ +N V G L L + G++ + D Sbjct: 77 TYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACV 136 Query: 110 -----IAGLHTDYDSQNQRLLLQVPPAWLPDQQVGDRNLYPASDARSSFGALFNYDLYLN 164 I D QRL L +P A++ ++ G + P L NY+ N Sbjct: 137 PLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGY--IPPELWDPGINAGLLNYNFSGN 194 Query: 165 DTD--EGGTYLAAWNELRLFDSWGTFSSTGQWRQSFNGAQADDTRRGFMRYDTTWRFTDE 222 GG A+ L+ + G + S+N + + + ++ TW D Sbjct: 195 SVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDI 254 Query: 223 QRLL-TYEAGDFVTGALPWSSSVRVGGVQLSRDFAARPDLVTYPLPAFAGEAAVPTSLDL 281 L GD T + + G QL+ D PD P G A + + Sbjct: 255 IPLRSRLTLGDGYTQGDIFDG-INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTI 313 Query: 282 FINGFKSSTTELQPGPYTLTNVPFINGAGEAVVVTTDALGRQVSTTLPFYVTSSLLQKGL 341 NG+ + + PGP+T+ ++ +G+ V +A G T+P+ L ++G Sbjct: 314 KQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGH 373 Query: 342 SDYSVAAGSLRRDYGVRDFSYGPGIASGSLRYGLSDIFTLETHAETAESLMLGGLGGNMR 401 + YS+ AG R ++ P +L +GL +T+ + A+ G Sbjct: 374 TRYSITAGEYRSGNAQQE---KPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKN 430 Query: 402 VGNFGVINAALAQSR--FDGDKGHQ-------------------VALGYQYNSQR-IGFG 439 +G G ++ + Q+ D H +GY+Y++ F Sbjct: 431 MGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFA 490 Query: 440 YQRLQRHGDYADLSRVDSPDMQL-----------SKSSEQVTLSVNLNAYGSIGAGYFDV 488 R Y ++ ++ + Q+T++ L ++ Sbjct: 491 DTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQ 550 Query: 489 R-AGDGTRTRLINLSYSKPL-WGSSSVYLSANREVGDSQWAVQAQLVIPFDL-------- 538 G + + ++ S + L + Sbjct: 551 TYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDS 610 Query: 539 -----HGTLALSMERSNEGETLQRVNYSRAVPAGVGVGYNL--GYAAGSD--RDAYRQAD 589 H + + SM G + + Y++ GYA G D + A Sbjct: 611 KSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYAT 670 Query: 590 VTWRLQSVQLQAGVYGSSGEMTRWADASGSLVWMDAGVFAANRIDDAFVVVSTAGYADVP 649 + +R G S + SG ++ GV ++D V+V G D Sbjct: 671 LNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAK 730 Query: 650 VRYENQEIGRTDAKGHLLVPYSSGYYRGKYEIDPMNLPPDVLAPDVEQRVAVRRGSGYLL 709 V ENQ RTD +G+ ++PY++ Y + +D L +V + V RG+ Sbjct: 731 V--ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRA 788 Query: 710 EFPLKRVMAASVELVDGNQQVLKLGSRVTHAESGTQAVVGWDGLVYLENLSLHNRLEVAL 769 EF + + + N + L G+ VT S + +V +G VYL + L +++V Sbjct: 789 EFKARVG-IKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKW 847 Query: 770 --EGGGHCEVAFDLPDAQGSVPLIG-PLVCR 797 E HC + LP L CR Sbjct: 848 GEEENAHCVANYQLPPESQQQLLTQLSAECR 878
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 28.0 bits (62), Expect = 0.043 Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 154 NKGKLCTSPLAGGNFAAAALPAAGWAIFVVDYDRSNRIASVAINQVATFDTLAMPGD 210 ++ K + GG F G+A ++ Y++ ++ + + D+ G+ Sbjct: 190 DESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSSKIYHTSPVKLDSGFTAGE 246
>PF01540#Adhesin lipoprotein Length = 475 Score = 35.5 bits (81), Expect = 0.001 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 29/278 (10%) Query: 273 KQTGEDVTKVVQSFNEIAKGPVEAVKKLDAELNFLTASQYANIISLEKQGKTIDAA---- 328 +Q + K + N K + + KL ++ + I LE + ID Sbjct: 106 QQKVDQANKKIADENLKIKEGAKELLKLSEKIQSFADTIALTITKLEGKKFQIDETFKKQ 165 Query: 329 -----------RAATDLYATALSSRSAEMESNLGSLESAWQSLGSFAKKAWDAMLDVGRK 377 A +AT + + + S L S + S W+ + K Sbjct: 166 LISTIELLNKKSAEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEEVKKAWSK 225 Query: 378 TTPEQELADVYNQIAEARKSISKYGSAASSLMGVNPDSLKALEKRATELQGRIA-DEAWK 436 E + A+ ++AE + I + L + T+L+ + DE +K Sbjct: 226 ELAEIK-AEDDKKLAEENQKIKEGAKELLKLSEKIQSFADTIALTITKLERKFQIDEKFK 284 Query: 437 AWEGNTNRFVQDAGKKGVDLINSTFTAAQTQTQKLQKQLEDLDKARADAMAAGGFNSEQE 496 ++ KK V+ + + T + L +LE + + Sbjct: 285 K---QLISTIELLNKKSVE-VKTFATVNTIKKDFLLSELESFKE-----FNTSWLE-KIV 334 Query: 497 TKYATARKNIEQEIADIKAREAKKNAPKN--VNRGVAE 532 +++ +K +E+A+IKA + KK A +N + GV E Sbjct: 335 SEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKNGVEE 372
>INTIMIN#Intimin signature. Length = 939 Score = 34.3 bits (78), Expect = 8e-04 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 9/98 (9%) Query: 277 DGGSTDIIQVELNYTARRVAPTITRLPTPIVVAAVDVTPATLSLEAGDTGDLEVVVTPAG 336 + D+ E+ + TI IV V T+ L+ G +V + +G Sbjct: 737 SDVAVDVKAPEVEFFT---TLTIDDGNIEIVGTGVKGKLPTVWLQYG-----QVNLKASG 788 Query: 337 ASQQVTWTSSAPTIASV-SETGLVTALAVGAATITATS 373 + + TW S+ P IASV + +G VT G TI+ S Sbjct: 789 GNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVIS 826
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.002 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 36 PQQEDVTGLKAKVEELLGEKKAAEKARREAEEKARAEAEEAARKSGNVEELEKSWSEKYN 95 Q +V ++ +E + E A E EEKA+ E E+ ++ S K Sbjct: 1080 TQTNEVAQSGSETKET-QTTETKETATVEKEEKAKVETEKTQEVPKVTSQV----SPKQE 1134 Query: 96 RREAELSSA 104 + E A Sbjct: 1135 QSETVQPQA 1143
>BACSURFANTGN#Yersinia/Haemophilus virulence surface antigen signature. Length = 322 Score = 26.2 bits (57), Expect = 0.039 Identities = 11/39 (28%), Positives = 20/39 (51%) Query: 70 HIFSAAVQKQDAVPGIDGGFVVLGVSTRKQSQKWFSDLF 108 H +A V ++ V D F S +++ +KWF++ F Sbjct: 258 HAIAAYVNEKSGVTFFDPNFGEFHFSDKEKFRKWFTNSF 296
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 24.8 bits (54), Expect = 0.024 Identities = 12/47 (25%), Positives = 19/47 (40%) Query: 11 NKPTKVRLDEAADDLLSAMARFKRTQKAVLAREILERGLDQMMQELN 57 K+ LDE + + +K+ K + E L Q +ELN Sbjct: 366 YDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELN 412
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.8 bits (64), Expect = 0.001 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Query: 33 SSSTD-GWMWAACYGFYFNASGEWDAVESDASDE 65 SS D GW W Y+ G+W+ +E D + Sbjct: 106 SSKIDGGWDWGNAARHYWVKDGQWNKLEVDMQNA 139
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 24.3 bits (53), Expect = 0.038 Identities = 8/28 (28%), Positives = 12/28 (42%) Query: 6 IAVSAIEAAIETMLLPGSGPVEEAKAET 33 A+ + + ML G+GP A T Sbjct: 144 QIEEALMSGLTCMLGGGTGPAHGTLATT 171
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 29.9 bits (67), Expect = 8e-04 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 5 LKFSALALAAVLATGCSSVSKETEAR 30 L+ SALAL L GC+S + + R Sbjct: 3 LRLSALALGTTLLVGCASSGTDQQGR 28
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.002 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 30 LIAVPLFILGTLLVLSGLFGFDLGQIAVGVIALVAALGL 68 IAVP+ +LGT +L+ FG+ + + + +V A+GL Sbjct: 369 TIAVPVVLLGTFAILA-AFGYSINTLTMF--GMVLAIGL 404
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 30.8 bits (69), Expect = 0.012 Identities = 13/38 (34%), Positives = 19/38 (50%) Query: 536 GEDGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLV 573 GE ++ F +D P++ +VVLRDG LV Sbjct: 203 GEATVESLRHALFFEKTLTNGEDNPLWRTVVLRDGLLV 240
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 120 bits (303), Expect = 1e-39 Identities = 48/88 (54%), Positives = 64/88 (72%) Query: 2 NKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTGR 61 NK +LI +A + ++ K + A+DAV +V+ L +G+ V L+GFG F V+ERA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKAIKIEAAKVPGFKAGKGLKDAV 89 NPQTG+ IKI+A+KVP FKAGK LKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.2 bits (70), Expect = 0.018 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 6/83 (7%) Query: 292 DWLVQVPWKAQSKVRLDLTKAEEILDADHYGLEEVKERILEYLAVQKRVKKIRGP----- 346 DW+ W ++ L D+ +++ + V ++ P Sbjct: 537 DWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFD 596 Query: 347 -VLCLVGPPGVGKTSLAESIAAA 368 + L G G+GK++L ++ Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 44.6 bits (105), Expect = 5e-08 Identities = 46/192 (23%), Positives = 68/192 (35%), Gaps = 26/192 (13%) Query: 2 SKQALIIIDIQN---DYFPGGKWPLDGADQAADNAARLLAAARQRGDLVVHVRHEFDTAD 58 ++ L+I D+QN D F G P+ + + N +L Q G VV+ Sbjct: 29 NRAVLLIHDMQNYFVDAFTAGASPVT---ELSANIRKLKNQCVQLGIPVVYTAQPGSQNP 85 Query: 59 AP------FFAPGSQGAAIHAK-VEPLPSEP---VVLKHKVNAFLGTDLEHTLDRHGVEA 108 F+ PG K + L E V+ K + +AF T+L + + G + Sbjct: 86 DDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQ 145 Query: 109 LTIVGSMSHMCIDAATRAAADLGYQVTVAHDACATLPLAFDGKQVPAAHVHDSAMAALAF 168 L I G +H+ A + DA A L H A+ A Sbjct: 146 LIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEK----------HQMALEYAAG 195 Query: 169 AYANVVKTDELL 180 A V TD LL Sbjct: 196 RCAFTVMTDSLL 207
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.1 bits (236), Expect = 1e-25 Identities = 77/257 (29%), Positives = 106/257 (41%), Gaps = 31/257 (12%) Query: 5 KVAIITAGGSGMGAAAARRLAADGFKVG----------ILSSSGKGEALAAELGGVGITG 54 K+A IT G+G A AR LA+ G + + SS K EA AE + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 55 SNQSLEDLKRLVDAVVEKWGRIDVLVNSAGHGPRAPILEISDEDWHKGMDTYLLNVIRPT 114 S E R+ + G ID+LVN AG I +SDE+W V + Sbjct: 69 SAAIDEITARIE----REMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 115 RLVTPYMQRQKGGVIINISTAWAFEPSELFPTSAVFRSGLAAFTKIFADQFAGDNVRINN 174 R V+ YM ++ G I+ + + A P A ++ FTK + A N+R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 175 VLPG----------WIDSLPAT-------EQRRDSVPLKRYGTREEIAATIAFLASEGAA 217 V PG W D A E + +PLK+ +IA + FL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 218 YITGQNIKVDGGVTRSV 234 +IT N+ VDGG T V Sbjct: 245 HITMHNLCVDGGATLGV 261
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 75.0 bits (184), Expect = 4e-19 Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 10/164 (6%) Query: 2 DNTRERLIDAALKLFLLQGVYVTGVTAIAAMAGVTKMTLYSHFPSKDALIVACLEERDRR 61 TR+ ++D AL+LF QGV T + IA AGVT+ +Y HF K L E + Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 62 WREEVACTLARHPE-----PVSGMLAFFDLYERFLLKDSERGCLFVNSAAEFPQFSHPVH 116 E A+ P ++ + + +F EF V Sbjct: 70 IGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIF--HKCEFVGEMAVVQ 127 Query: 117 LAVSRHKQGIRENLAAL---AMSAGISDPDAVAQGLFILLEGSF 157 A + + + A + D + + I++ G Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYI 171
>cloacin#Cloacin signature. Length = 551 Score = 35.1 bits (80), Expect = 7e-05 Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 23 ADISPISSAYAKGGGGGGGGGGHGGGGGHGGGNGAGHGGGMGGHSGSGKGLGSDHAGKA 81 +D S SS GGG G G GGG GHG G G G GG SG+G L + A A Sbjct: 34 SDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG---GGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 32.0 bits (72), Expect = 8e-04 Identities = 25/91 (27%), Positives = 31/91 (34%) Query: 39 GGGGGGHGGGGGHGGGNGAGHGGGMGGHSGSGKGLGSDHAGKATRDHGVSGNHYGSSRNS 98 GG G GH G GN G G+G G+ G G SG H+G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 99 DNGHGTTTSGVAHSKDTRGLAKSTAISGTTP 129 NG G SG A + ++ P Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFP 93 Score = 31.2 bits (70), Expect = 0.001 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 38 GGGGGGGHGGGGGHGGGNGAGHGGGMGGHSGSGKGLGSDHAGKATRDHGVSGNHYGSSRN 97 GG G G GGG G G + + GG SGSG G +G SG G+ N Sbjct: 22 GGPTGLGVGGGASDGSGWSSEN-NPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.2 bits (161), Expect = 2e-15 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 4 SETVERILDAAEQLFAERGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGP 63 ET + ILD A +LF+++G + TSL I AGV A+ +HF K L ++ Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 64 FCASLERELERRQAKPEQKPSLEELLEMLVEQAL 97 + P L E+L ++E + Sbjct: 70 IGELELEYQAKFPGDPL--SVLREILIHVLESTV 101
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 57.9 bits (140), Expect = 3e-11 Identities = 73/357 (20%), Positives = 131/357 (36%), Gaps = 24/357 (6%) Query: 24 MLIPALLPVLPGLL------GVGFVELGVALAVFNIVSALVQAPLGYAVDHYGARKVLKA 77 + I ++PVLPGLL G+ LA++ ++ LG D +G R VL Sbjct: 19 VGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLV 78 Query: 78 GLLLGSLSFVLLAASPGYAVLLVAMAMAGLANGVYHPADYALLANGIEPARLGRSFSIHT 137 L ++ + ++A +P VL + +AG+ A +A+ + R F + Sbjct: 79 SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMS 137 Query: 138 FAGFLGSAVTPAVFLGIAAALGTRAAL-AAGAVFGVAALLLISIPGSGVYRVARPANKQD 196 G P + G+ A AA A+ G+ L + RP ++ Sbjct: 138 ACFGFGMVAGPVLG-GLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREA 196 Query: 197 TGPAAATGRVRLFTPMIGVLTVLFILLNLSTSAIEKFSVAALVQGQGLTLAWANAALTAF 256 P A+ R T + ++ V FI+ + + A V W +A Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIM-----QLVGQVPAALWVIFGEDRFHW-DATTIGI 250 Query: 257 LLS--SAAGVLCGGALADR-TRRHGLVAALAFALAAALTALVALGLL-QGWA--LVVVLG 310 L+ L + R G AL + A T + L +GW ++VL Sbjct: 251 SLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLL 310 Query: 311 AIGLLTGVIAPSRDMLVKAAAPPGAEGKTFGLVSTGFNIGGAIGPVAFGWMLDQRLP 367 A G G+ P+ ++ +G+ G ++ ++ +GP+ F + + Sbjct: 311 ASG---GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT 364
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.045 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 23/147 (15%) Query: 22 EKLVERLLIVLLADGHMLVEGAPGLAKT---KAIKELAEGIEAQFHRIQFTPDLLPADIT 78 +++ L ++ D +++ G G K +A+ + + F I +P D+ Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAA--IPRDLI 204 Query: 79 GTEIYRPETGSFV---------FQQ---GPIFHNLVLADEINRAPAKVQSALLEAMAERQ 126 +E++ E G+F F+Q G +F DEI P Q+ LL + + + Sbjct: 205 ESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF-----LDEIGDMPMDAQTRLLRVLQQGE 259 Query: 127 VS-VGRSTYDLSPLFLVMATQNPIEQE 152 + VG T S + +V AT ++Q Sbjct: 260 YTTVGGRTPIRSDVRIVAATNKDLKQS 286
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.3 bits (234), Expect = 2e-25 Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 8/231 (3%) Query: 3 GIEHKVIVITGASSGIGEATARLLASKGARVVLGARRTDRLEALADDIRSAGGTADVLAL 62 GIE K+ ITGA+ GIGEA AR LAS+GA + ++LE + +++ A+ Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVTSLDDMQSFIDFAVELHGRVDVLINNAGVMPLSKLEALKVNEWNRMIDVNIRGVLHGI 122 DV + G +D+L+N AGV+ + +L EW VN GV + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 AATLPLMQQQRAGQIINIASIGAYAVSPTAAVYCATKYAVRAISEGLRQEVGG-DIRVTV 181 + M +R+G I+ + S A + A Y ++K A ++ L E+ +IR + Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 IAPGVTESELADSI--SDEGGRTEMREFR---KIAIPAAAIARA--IAYAV 225 ++PG TE+++ S+ + G ++ K IP +A+ IA AV Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.1 bits (65), Expect = 0.011 Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 135 VERYVATEQPLDCAGSFKAEGLGVSLFQSTHGCDATSLIGLPLIRLVDMLTKEGVMV 191 V YV E D G +G + G T+ +G P+ +D+ T+ G MV Sbjct: 66 VNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMV 122
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 30.3 bits (68), Expect = 0.006 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 14/84 (16%) Query: 11 DWDGTLADSIGRIVEAMNVAAERAGEAQSSDDAVKGIIGLALDEAIHTLYPHLVPAEVAS 70 + ++ S +I A+NV ++ + G +G+ +I +A+ Sbjct: 254 QYTESMVYSKSQIEAALNVNSK----------ILDGTLGIDFK-SISK---GEKKVMIAA 299 Query: 71 FRQHYADVYVALDQQPSPLFDGVV 94 ++Q + V L P+ +FD V Sbjct: 300 YKQIFYTVSANLPNNPADVFDKSV 323
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.5 bits (159), Expect = 1e-12 Identities = 40/270 (14%), Positives = 76/270 (28%), Gaps = 19/270 (7%) Query: 549 VAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQS 608 + P+ + V S+ S APV P A +E + E ++ Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 609 RNRNGRRDEERKPRE-ERAERAPRE--------ERAPREERAPREERAPREERAPREERA 659 +N + E + E A+ A E A + +E A E+ Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 660 PREERAPREERAPR--EERTPRQPREDRRSNRGEERVRELREPLDATPPAEREERQPREE 717 + + + P+ + +P+Q + E RE ++ P + E Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQ-EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 718 RVAREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREE 777 + A+E P E P + E + + + R Sbjct: 1170 QPAKE--TSSNVEQPVTESTT-VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Query: 778 RAPRPPREERQPRAAEEATEQAAELAEEQL 807 P A ++ + +A L Sbjct: 1227 VRSVP----HNVEPATTSSNDRSTVALCDL 1252 Score = 62.0 bits (150), Expect = 1e-11 Identities = 62/318 (19%), Positives = 104/318 (32%), Gaps = 25/318 (7%) Query: 738 PREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAAEEATE 797 P E+ + + + EE A R + AP PP P E TE Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-RVDEAPVPPPAPATP---SETTE 1038 Query: 798 QAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIDGSEEEG 857 AE ++++ E ++EQ+ T+ R + + + + Q N + GSE + Sbjct: 1039 TVAENSKQESKTVE--KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS--GSETKE 1094 Query: 858 SEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATAEVAAVAE-TDN 916 ++ + AT E A S + Q + + AE A + T N Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 917 SEAAQPVEQAEVVTKAEEASVAPAVEQPVTEPVAAAEATAEPVVEMAPQPVAEDAPAAEP 976 + Q T+ + VEQPVTE T + P +P Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTE-----STTVNTGNSVVENPENTTPATTQP 1209 Query: 977 AVVAETVVTETPAEAPAVEAGEIEQAPAVVEVAPVAAQPAPVVEAQPEVV-----AEPAP 1031 TV +E+ + + P VE + A ++ A + Sbjct: 1210 -----TVNSESSNKPKNRHRRSVRSVPHNVE-PATTSSNDRSTVALCDLTSTNTNAVLSD 1263 Query: 1032 AVVEPATVMLANGRAPND 1049 A + V L G+A + Sbjct: 1264 ARAKAQFVALNVGKAVSQ 1281 Score = 59.3 bits (143), Expect = 7e-11 Identities = 55/284 (19%), Positives = 87/284 (30%), Gaps = 21/284 (7%) Query: 808 PGEELLQDEQEGTDGERPRRRSRGQRR-RSNRRERQRNANGELIDGSEEEGSEEQPQQHQ 866 P E + T+ P SN E R + + SE Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET------ 1036 Query: 867 ATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATAEVAAVAETDNSEAAQPVEQA 926 TE AE + + T + +++ AQ + A+ A + V A T +E AQ Sbjct: 1037 -TETVAENSKQESKTVEKNEQD-ATETTAQNREVAKEAKSNV--KANTQTNEVAQ-SGSE 1091 Query: 927 EVVTKAEEASVAPAVEQPVTEPVAAAEATAEPVVEMAPQPVAEDA----PAAEPAVVAET 982 T+ E VE+ V + P V P E + P AEPA + Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 983 VVTETPAEAPAVEAGEIEQA----PAVVEVAPVAAQPAPVVEAQPEVVAEPAPAVVEP-A 1037 V ++ + EQ + VE + + E PA +P Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 1038 TVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAASQEPALET 1081 +N R VR E A ++ + + + T Sbjct: 1212 NSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTST 1255 Score = 58.2 bits (140), Expect = 2e-10 Identities = 42/292 (14%), Positives = 83/292 (28%), Gaps = 32/292 (10%) Query: 683 EDRRSNRGEERVRELREPLDATPPAEREERQP----REERVAREERAPREERAPREERAP 738 N E+ + + + T P + P E +AR + AP AP Sbjct: 977 RYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 739 REERA--PREERAPREERAPREERAPREERAPREERAPREERAPRPPR--------EERQ 788 E A ++E E+ + R +E + + +E Q Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 789 PRAAEEATEQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGE 848 +E E E+ E Q+ + T P++ + R+ + Sbjct: 1097 TTETKETATVEKE--EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 849 LIDGSEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATAEV 908 + + + + Q + T++ ++ Sbjct: 1155 IKEPQSQTNT--TADTEQPAK----------ETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 909 --AAVAETDNSEAAQ-PVEQAEVVTKAEEASVAPA-VEQPVTEPVAAAEATA 956 A T NSE++ P + ++ +V PA VA + T+ Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTS 1254 Score = 47.4 bits (112), Expect = 4e-07 Identities = 27/198 (13%), Positives = 53/198 (26%), Gaps = 33/198 (16%) Query: 483 QRLRDDNPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEE 542 + ++ V N + E+A + +E T+T +E A +A E Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETK----ETQTTETKETATVEKEEKAKVETEKTQEV 1122 Query: 543 PQAAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERR 602 P+ + V+P E +P AE + N+ Sbjct: 1123 PKVTSQVSPKQEQSE-----------------------------TVQPQAEPARENDPTV 1153 Query: 603 NGRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAPRE 662 N ++ N D E+ +E + + P + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 663 ERAPREERAPREERTPRQ 680 E + + + R Sbjct: 1214 ESSNKPKNRHRRSVRSVP 1231 Score = 44.3 bits (104), Expect = 3e-06 Identities = 37/347 (10%), Positives = 78/347 (22%), Gaps = 62/347 (17%) Query: 500 EIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAAEEPQAAAPVAPAPSAPEPS 559 E AE + Q + V+ A E + A A Sbjct: 1035 ETTETVAENSKQ---------ESKTVEKNEQDATETTAQNREVAKEAKSNVKA------- 1078 Query: 560 LFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEERRNGRQQSRNRNGRRDEER 619 VA + S + + E + Sbjct: 1079 -----------------NTQTNEVA--------------------QSGSETKETQTTETK 1101 Query: 620 KPREERAERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERTPR 679 + E + E +E + ++ + E + +E + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 680 QPREDRRSNRGEERVRELREPLDATPPAE---REERQPREERVAREERAPREERAPREER 736 +E + +P+ + P A + E + + + Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKN 1221 Query: 737 APREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREERQPRAAEEAT 796 R P R A + + R + Q A Sbjct: 1222 RHRRSVRSV----PHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGK 1277 Query: 797 EQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQR 843 + +++ ++ E Q ++ + S Q RR + + Q Sbjct: 1278 AVSQHISQLEMNNEG--QYNVWVSNTSMNKNYSSSQYRRFSSKSTQT 1322
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 73.4 bits (180), Expect = 1e-17 Identities = 51/245 (20%), Positives = 111/245 (45%), Gaps = 4/245 (1%) Query: 8 NWVALNTIVYREVRRFLRIWPQTLLPPAITMVLYFVIFGNLIGRQIGDMGGFTYMQYIVP 67 NW+A + R + + +LL ++Y G +G +G +GG +Y ++ Sbjct: 15 NWIA---VWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAA 71 Query: 68 GLIMMSVITNS-YGNVVSSFFGSKFQRSIEELMVSPVSPHTILVGYVLGGVLRGLAVGVI 126 G++ S +T + + + ++F + QR+ E ++ + + I++G + + G Sbjct: 72 GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131 Query: 127 VTILSMFFTDLQVHHLGVTVVVVLLTATIFSLLGFVNAVFARNFDDISIIPTFVLTPLTY 186 + +++ Q L + V+ LT F+ LG V A ++D T V+TP+ + Sbjct: 132 IGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILF 191 Query: 187 LGGVFYSINLLPPFWQTVSLANPVLHMVNSFRYGILGVSDISIGTAITFMLVATAVLYVV 246 L G + ++ LP +QT + P+ H ++ R +LG + + + + + + + + Sbjct: 192 LSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFL 251 Query: 247 CVRLL 251 LL Sbjct: 252 STALL 256
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 299 bits (767), Expect = 1e-91 Identities = 218/756 (28%), Positives = 327/756 (43%), Gaps = 71/756 (9%) Query: 29 AQALTTVDGDLTIDANTPLDNYQLNPGARLDANGASTQHIDIFGGAHLEMSGSTVDAQLD 88 Q VDG L I A L L P +R+ + + G + LD Sbjct: 173 VQRSAIVDGGLHIGALQSLQPEDLPP-SRVVLRDTNVTAVPASGAPAAVSVLGASELTLD 231 Query: 89 DGIALRGGSSANVTANSRVVSARYGLRLQHDNSLGGSTATVSDSYVEGARGGALISDEST 148 G + GG +A V A V ++ ++ G GGA+ Sbjct: 232 -GGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGG----------AVPGGAVPGGAVP 280 Query: 149 LVLHNSTLVGTGTAAAADMFDNATLSAEGSRLQGARNGLRILSAQAQPGTATVSLVGSHV 208 +++ S ++ G I + A V++ G + Sbjct: 281 GGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRG----ARVTVSGGSL 336 Query: 209 EGQDGSAIVVGNP-ALGPAEADILVAGGSTLQGSNGTLLEVMGSSTARMTV-DNSQLVGD 266 G+ I G P A + + + LL + ++T+ + GD Sbjct: 337 SAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGD 396 Query: 267 VRVEEGSSAS--------LTLDNHASLTGRLENVAGLTLSNQARWNMVEDSKVGSLALEG 318 + E S + L + A TG V L++ N A W M ++S VG+L L Sbjct: 397 IVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDN-ATWVMTDNSNVGALRLAS 455 Query: 319 -GSVRFGEP---GQYQRLSVGTLAGSGNFIMDADFSTGDSDYLEITGTATGSHTLLVGSS 374 GSV F +P G+++ L+V TLAGSG F M+ G SD L + A+G H L V +S Sbjct: 456 DGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNS 515 Query: 375 GADPVAENQLHLVHA-AAGDAQFSLLN--GPVDVGTFSYELVQRGN-DWFLDGASKVISP 430 G++P + N L LV A F+L N G VD+GT+ Y L GN W L GA +P Sbjct: 516 GSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAP 575 Query: 431 G------------------------------TASVLALFNT-----APTVWYGELTTLRS 455 +A+ A NT A T+WY E L Sbjct: 576 KPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSK 635 Query: 456 RMGELRLDQGKAGGWVRAYGNKYNVSDAAGSAYQQVQQGFSLGADMPLPLGDGQWLLGVM 515 R+GELRL+ G W R + + + + AG + Q GF LGAD + + G+W LG + Sbjct: 636 RLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGL 695 Query: 516 AGHSNSDLNLTRGASADVKSYYLGLYATWLDAQSGYYLDGVVKLNRFDNSSDITMSDGKR 575 AG++ D T S ++G YAT++ A SG+YLD ++ +R +N + SDG Sbjct: 696 AGYTRGDRGFTGDGGGHTDSVHVGGYATYI-ADSGFYLDATLRASRLENDFKVAGSDGYA 754 Query: 576 SKGDYDNFGVGASLEFGRHLELGNDYFIEPYTQWSMVTIQGKHYDLDNGMQARGDVTRSL 635 KG Y GVGASLE GR + +F+EP + ++ G Y NG++ R + S+ Sbjct: 755 VKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSV 814 Query: 636 LGKAGATVGRTFDLGAGRKVQPYLRAAYAHEFVDDNQVNVNDNRFDNDLSGSRGELGLGV 695 LG+ G VG+ +L GR+VQPY++A+ EF V+ N +L G+R ELGLG+ Sbjct: 815 LGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGM 874 Query: 696 AVSMTDRLQLHADFDYANGEKIEQPWGANVGLHYSW 731 A ++ L+A ++Y+ G K+ PW + G YSW Sbjct: 875 AAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW 910
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 126 bits (317), Expect = 2e-37 Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 8/252 (3%) Query: 7 GQVALVTGAGAGIGRATALAFAHEGMKVVVADLDPVGGEATVAQIHAAGGEALFIACDVT 66 G++A +TGA GIG A A A +G + D +P E V+ + A A DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 67 RDAEVRQLHVRLMAAYGRLDYAFNNAGIEIEQHRLAEGSEAEFDAIMGVNVKGVWLCMKY 126 A + ++ R+ G +D N AG+ + + S+ E++A VN GV+ + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 127 QLPLLLAQGGGAIINTASVAGLGAAPKMSIYSASKHAVIGLTKSAAIEYAKKGIRVNAVC 186 ++ + G+I+ S M+ Y++SK A + TK +E A+ IR N V Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 187 PAVIDTDMFRR----AYQADPRKAEFAAAMH---PVGRIGKVEEIASAVLYLCSDGAAFT 239 P +TDM A+ P+ ++ K +IA AVL+L S A Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 240 TGHCLTVDGGAT 251 T H L VDGGAT Sbjct: 247 TMHNLCVDGGAT 258
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 33.6 bits (76), Expect = 8e-04 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 118 EIEQLMEQNDALRAE-LERERAERLKLEASLKPRALTPQAHDAFKALAGELKAKTL 172 E++ E L+ E +E++R + LK E +LK L P+ DAFK +A EL L Sbjct: 275 GFEKISES---LKKEGVEKDRIDVLKGEKALKASGLVPEHADAFKKIARELNTYIL 327
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 39.1 bits (91), Expect = 5e-06 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 1/106 (0%) Query: 113 LLLGLLFAFGMGMLLALITHALPSLKMVIRMAFIPLYFISGVLAPASYLPQAMMPVLLLN 172 L GL FA +GM++ + + + P+ F+SG + P LP Sbjct: 155 ALTGLAFA-SLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFL 213 Query: 173 PFLHIVELIRAEVLPHYTPVDGVSETYVISFTVILLFLSLGTYRAR 218 P H ++LIR +L H + + VI FLS R R Sbjct: 214 PLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRRR 259
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.028 Identities = 11/20 (55%), Positives = 12/20 (60%) Query: 36 LIGRNGAGKSTLMRLLGGAD 55 L G G GKSTL+ L G D Sbjct: 601 LEGTGGIGKSTLINTLVGLD 620
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 39.3 bits (91), Expect = 2e-05 Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 8/154 (5%) Query: 172 IAREQMKFAQGELETARVNYSKRKTQLLDFQNENKVLDGGNTAQSRA-----SIIADLES 226 A +++T + + + D +++++VL+ + R LE+ Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 227 QYTK--EQAVLTEMSFK-LRPDAPQVRQQKQRVAAITQQLAKEKRLLVSSPQGSQLNVVA 283 ++ K EQ ++E S + LR D R+ K+++ A Q+L ++ ++ +S Q + ++ A Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA 390 Query: 284 SRYQQLTLDAGIAEETYKSAVAALDNARVEASKK 317 SR + ++ + E K A N +E SKK Sbjct: 391 SREAKKQVEKALEEANSKLAALEKLNKELEESKK 424
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.048 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 677 PAPAK-ATAVATNKPAQPKPAAVAATPAPAPAPAPIPTPITVSMPAA 722 PAPA+ + P AV P P P P P PI A Sbjct: 44 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 90
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 170 bits (433), Expect = 1e-52 Identities = 74/353 (20%), Positives = 155/353 (43%), Gaps = 48/353 (13%) Query: 3 KILVTGGAGYIGSHTCVELMSLGHEVVIFDNFSNSSPVALE--RIAEITKKPVKHVFGNI 60 K LVTG AG+IG H L+ GH+VV DN ++ V+L+ R+ + + + ++ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 61 LDQDAIEKALIENKCDMVIHFAGLKSVGESTREPLSYYENNVAGTLKLLQAMKNCNVKNL 120 D++ + + V +V S P +Y ++N+ G L +L+ ++ +++L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 121 VFSSSATVYGQPQYLPLTE----NHPLSTTNPYGSSKLIIEEMLRDLYTSDKTWSI--TI 174 +++SS++VYG + +P + +HP+S Y ++K E M +T + + T Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELM---AHTYSHLYGLPATG 175 Query: 175 LRYFNPVGAHSSGRIGEDPHGIPNNLMPYVAQVAIGKLEKLTVFGDDYDTHDGTGVRDYI 234 LR+F G P G P ++ + A+ + + + V+ G RD+ Sbjct: 176 LRFFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMKRDFT 218 Query: 235 HVVDLALGHVKAIEQLGESQCLA----------------INLGTGIGYSVLEVVNAFQAS 278 ++ D+A ++ + + + N+G +++ + A + + Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDA 278 Query: 279 SNREVPYQLAPRRQGDVASCFANAELAKNVLHWEAKLGLEQMCQDHWNWQYRN 331 E + P + GDV A+ + V+ + + ++ ++ NW YR+ Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW-YRD 330
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.3 bits (169), Expect = 5e-16 Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 9/221 (4%) Query: 10 ILITGATGGIGGALAPAYAAPGVTLILQGRRQDRLAEMAEQCRALGAQVLLEALDVRDLD 69 ITGA GIG A+A A+ G + ++L ++ +A DVRD Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 70 ALRAMVRRVSEQHQPDLVLVGAGLNTAVGANGEAEDWDDSRALMEVNVMAALATVEAALP 129 A+ + R+ + P +LV G D ++ A VN + Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSD-EEWEATFSVNSTGVFNASRSVSK 129 Query: 130 AMRSRGDGQIALFSSLAGWRGLPVTPTYSASKAAIRVYGEAIRDWLAPEGVKVNVIVPGY 189 M R G I S Y++SKAA ++ + + LA ++ N++ PG Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 190 VESKMCFEMPGPKPFLWTADKAARRIKRGLAANQARISFPF 230 E+ M + LW + A ++ +G + P Sbjct: 190 TETDM-------QWSLWADENGAEQVIKGSLE-TFKTGIPL 222
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.5 bits (79), Expect = 1e-04 Identities = 17/52 (32%), Positives = 24/52 (46%) Query: 119 VSKAARQHGVGSALVQACCAHAAGQGFTQVELEVPLSNHRAQHLYLHNGFAL 170 V+K R+ GVG+AL+ A F + LE N A H Y + F + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 31.2 bits (70), Expect = 0.046 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 4/113 (3%) Query: 2103 LVTGGLGGFGLRTAQWLIDKGARHLVLLGRRGPASEEAQPQLALWHAQGIDVQAVACDIT 2162 +TG G G A+ L +GA + P E A+ +A D+ Sbjct: 12 FITGAAQGIGEAVARTLASQGAH--IAAVDYNPEKLEKVVSSL--KAEARHAEAFPADVR 67 Query: 2163 DREQLRGVFDRIAASPWPLRGLVHAATVIDDSLIRNLDGDQLRRVLEPKAKGA 2215 D + + RI P+ LV+ A V+ LI +L ++ + G Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 34.9 bits (80), Expect = 2e-04 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%) Query: 148 IVGTLYWSALLFPLILVPLI-LATLGISWLLASLGVYLRDVGHVITVLTTVLLFLSPVLY 206 +G W +LL+ L ++ L LA + ++ +L T++ T +LFLS ++ Sbjct: 138 ALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVF 197 Query: 207 PVAALPEAYQPWLKLNPLTYIIEESRSVLLFGNLPDWVNLATALAVGAII 256 PV LP +Q + PL++ I+ R ++L + D AL + +I Sbjct: 198 PVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVI 247
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.3 bits (78), Expect = 0.004 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 11/132 (8%) Query: 717 TDLQSKLDLIVDSNKEIAHALAHVKASVSQSTVLAELSESLLAKDRKIHELSTQLQKKVQ 776 L+++ + ++ AL ST + ++L A+ + +L+K ++ Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMN---FSTADSAKIKTLEAEKAALEARQAELEKALE 270 Query: 777 -QQEALAQVLHEQQMMGLNAGEAKDPELLG-----VPALQASIARWQESLAQKDEHIRNL 830 + + L A +A L A+ + L E + L Sbjct: 271 GAMNFSTADSAKIK--TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQL 328 Query: 831 EERLHVLQVDKD 842 E L+ Sbjct: 329 EAEHQKLEEQNK 340
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.2 bits (128), Expect = 3e-10 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 20/162 (12%) Query: 1 MKVLLLGKDGQVGWELQRALVVMGEIVALGRNPVSTSYGTL-----------------SG 43 MK L+ G G +G+ + + L+ G V +G + ++ Y Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQV-VGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 44 DLSDLDGLRQTIRAVAPDLIVNAAAYTAVDKAETEQELARKVNALASGVIAEEAKRLD-A 102 DL+D +G+ + + + + AV + N I E + Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 103 LFVHYSTDYVFDGAGTSPWKESDSVS-PVNYYGATKLEGEQL 143 ++ S+ V+ P+ DSV PV+ Y ATK E + Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELM 161
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 178 bits (454), Expect = 1e-55 Identities = 87/358 (24%), Positives = 145/358 (40%), Gaps = 54/358 (15%) Query: 1 MKILVTGGAGFIGSAVIRHIISNTADSVVNVDKLT--YAGNL-ESLQSVAQNPRYAFEHV 57 MK LVTG AGFIG V + ++ VV +D L Y +L ++ + P + F + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICSREEMDRVFREHQPDAVMHLAAESHVDRSITGPSAFIETNIIGTYVLLEAARGYWSG 117 D+ RE M +F + V V S+ P A+ ++N+ G +LE R Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR----- 114 Query: 118 LDEARKSAFRFHHI---STDEVYGDLEGPEDLFTEATPY-QPSSPYSASKASSDHLVRAW 173 + H+ S+ VYG + F+ P S Y+A+K +++ + + Sbjct: 115 -------HNKIQHLLYASSSSVYGL--NRKMPFSTDDSVDHPVSLYAATKKANELMAHTY 165 Query: 174 ARTYGLPTLVTNCSNNYGPFHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLFVEDHAR 233 + YGLP YGP+ P+ + LEGK + +Y G RD+ +++D A Sbjct: 166 SHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAE 225 Query: 234 ALYKVV------------------TEGEVGETYNIGGHNEKQNIEVVRTVCELLDELRPD 275 A+ ++ YNIG +E++ + L D L + Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNS---SPVELMDYIQALEDALGIE 282 Query: 276 SAFAPHFNLVTYVTDRPGHDVR--YAIDASKIQRELGWVPEETFESGIRKTVEWYLSN 331 + + +PG DV A D + +G+ PE T + G++ V WY Sbjct: 283 A-------KKNMLPLQPG-DVLETSA-DTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.6 bits (129), Expect = 1e-09 Identities = 43/248 (17%), Positives = 89/248 (35%), Gaps = 38/248 (15%) Query: 305 TVLVTGAGGSIGSELCRQIIGLGPKTLLLFDHSEYNLYTILSELEQRISRESLSIRLLPI 364 LVTGA G IG + ++++ G ++ D N Y +S + R+ + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG-HQVVGID--NLNDYYDVSLKQARLELLAQP-GFQFH 57 Query: 365 LGSVRNQAHLLDVMKAWRVDTVYHAAAYKHVPMVEHNMAEGVLNNVIGTLHTAQAALQAG 424 + ++ + D+ + + V+ + V N +N+ G L+ + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 425 VANFVLIST---------------DKAVRPTNVMGSSKRLAEMILQALSREMAPVMFADS 469 + + + S+ D P ++ ++K+ E++ Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTY------------ 165 Query: 470 GKVSRVNKTRFTMVRFGNVLGSSGS---VVPLFHKQIKSGGPLTV-THPKITRYFMTIPE 525 S + T +RF V G G + F K + G + V + K+ R F I + Sbjct: 166 ---SHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDD 222 Query: 526 AAQLVIQA 533 A+ +I+ Sbjct: 223 IAEAIIRL 230
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 76.4 bits (188), Expect = 6e-18 Identities = 64/343 (18%), Positives = 122/343 (35%), Gaps = 43/343 (12%) Query: 1 MRVLVTGASGFVGGALIEQLR-----------LDDGLQLRLAQRRAIEVPFAECIQV-GD 48 M+ LVTGA+GF+G + ++L L+D + L Q R + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 49 INGATDWQTVLA--GVDVVVHLAARAHILHHRDA--DPLAMFREVNTQGTLNLARQAAFA 104 + + A + V R + R + +P A + + N G LN+ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAV---RYSLENPHA-YADSNLTGFLNILEGCRHN 116 Query: 105 GVRRFVFISSIGVNGAQTKGQAFNERSAVS-PHSPYAQSKYEAEC------GLLNMAESG 157 ++ ++ SS V G K F+ +V P S YA +K E L + +G Sbjct: 117 KIQHLLYASSSSVYGLNRK-MPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 158 VMEVVII----RPPMIFAAHAPGNFAR-LLKLTSLPVPLPFGGMDNLRSLVSLQNLIGFI 212 + + RP M A F + +L+ S+ V + R + ++ I Sbjct: 176 LRFFTVYGPWGRPDM-----ALFKFTKAMLEGKSIDV---YNYGKMKRDFTYIDDIAEAI 227 Query: 213 ELCVKSPHAANEVFLICDGDDVSTEEMVRRLAKGMGCRRWLLPFPKTILHWMAILTGRES 272 A+ + + G ++ R G L+ + + + + I + Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 273 MYIQLFGSLQI--DAGKARELLQWEPRVSTHQGLEEAGRRYKA 313 + +Q L+ D E++ + P + G++ Y+ Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 114 bits (287), Expect = 4e-37 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 2 TKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVG 61 K +LI + V L+ KD A+ + +S LA G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAK-VAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGQSVSLEGKFVPHFKPGKELRDRV 90 RNP+TG+ + ++ VP FK GK L+D V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.5 bits (118), Expect = 1e-08 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 3/153 (1%) Query: 36 MSADFGWGRGVFAFAIALQNLIWGLAQPFAGALADRLGAARVVIIGGILYAVGLILMGLA 95 ++ DF + L + + G L+D+LG R+++ G I+ G ++ + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 96 DSPWSLSLSAGLLIGIGLSGTSFSVILGVVGRAVPAEKRSMAMGIASAAGSFGQFAMLPG 155 S +SL + A + G G + ++++ VV R +P E R A G+ + + G+ + P Sbjct: 100 HSFFSLLIMARFIQGAG-AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGE-GVGPA 157 Query: 156 TQGLI-QWLGWSAALLVLGLLVAFIVPFVGLLR 187 G+I ++ WS LL+ + + + + LL+ Sbjct: 158 IGGMIAHYIHWSYLLLIPMITIITVPFLMKLLK 190
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 30.2 bits (68), Expect = 0.011 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 16/80 (20%) Query: 279 LTAQVQALLTRYRAIQ---QAEGY-----EGVYLFPNRRGLCLSETQASNVF---KRMGQ 327 LT + + L+ +Q AE + V F ++ +F K++ Sbjct: 57 LTDEQKELIDTVLTVQNREDAESFLLKINPYVIPFQE-----VTAQTLKKLFPKAKKLKL 111 Query: 328 GEWTSHDLRKVSRSTWTDLG 347 + D++++S +W D G Sbjct: 112 PDMEELDMKELSYLSWIDKG 131
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.1 bits (68), Expect = 0.020 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 11/90 (12%) Query: 155 GPVVVDIPKDMTNPAEKFEYVYPKKVKLRSYSPAVRGHSGQIRKAAEMLLAAKRPVVYS- 213 G V+ + K Y ++ L YSP H E+ AA + S Sbjct: 74 GAVLARVDAGDEQLERKIHY---RQQDLVDYSPVSEKHLADGMTVGELCAAA---ITMSD 127 Query: 214 --GGGVILG--GGSEALTEIAKSLNLPVTN 239 ++L GG LT + + VT Sbjct: 128 NSAANLLLATVGGPAGLTAFLRQIGDNVTR 157
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.016 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 7/86 (8%) Query: 11 QKRPTGRSRAWLGWALKLSLVGLVIVAGFAVYLDAVV----QEKFSGKRWTIPAKVYARP 66 + P R + + + LV I++ ++ V + SG+ I + Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLG-QVEIVATANGKLTHSGRSKEIKPIENSIV 107 Query: 67 LELFT--GQKLSKNDFLTELDALGYR 90 E+ G+ + K D L +L ALG Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAE 133
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 49.6 bits (118), Expect = 4e-09 Identities = 69/282 (24%), Positives = 103/282 (36%), Gaps = 30/282 (10%) Query: 3 RRPAAFLALCASLVLSTQALAAEL-PQRWVSAGGALSEWITALG----GEARLVGVDTTS 57 RR +AL L A AA + P R V+ E + ALG G A + Sbjct: 10 RRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWV 69 Query: 58 QHPASLKALPSVGYQRQLSAEGILSLRPDVLVGTEEMGPPP-VLAQIRKAGVRVELFSS- 115 P ++ VG + + + E + ++P +V + GP P +LA+I F+ Sbjct: 70 SEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARI----APGRGFNFS 125 Query: 116 --KAELPAVDENLRHLGQLLGAEQQASALAADYRQRLDALQANVKLAQAGQQAPGVLLLV 173 K L ++L + LL + A A Y + ++K + A +LL Sbjct: 126 DGKQPLAMARKSLTEMADLLNLQSAAETHLAQY----EDFIRSMKPRFVKRGARPLLLTT 181 Query: 174 GHAGAKPLIAGQGTAGDWLLSQAGGRNLAAHPGYKNF------SNEALAAL-DPDVIVFS 226 L+ G + +L + G N A G NF S + LAA D DV+ F Sbjct: 182 LIDPRHMLVFGPNSLFQEILDEYGIPN--AWQGETNFWGSTAVSIDRLAAYKDVDVLCFD 239 Query: 227 DRALADEQALQALLKENPALAASRAVREKRLVSLDPTLLVGG 268 D AL A P A VR R + G Sbjct: 240 HDNSKDMDALMA----TPLWQAMPFVRAGRFQRVPAVWFYGA 277
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 41.1 bits (96), Expect = 2e-06 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Query: 88 DNRISFGDAGRFGHNQYALSNDGQSALQEVVPMILDAANSEEGRKWFKQVVIEGSTDTDG 147 + F N+ L +GQ+AL ++ L + ++G VV+ G TD G Sbjct: 212 TKHFTLKSDVLFNFNKATLKPEGQAALDQLY-SQLSNLDPKDGS-----VVVLGYTDRIG 265 Query: 148 SYLYNLHLSLQRSEWV 163 S YN LS +R++ V Sbjct: 266 SDAYNQGLSERRAQSV 281
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 30.7 bits (69), Expect = 0.021 Identities = 16/40 (40%), Positives = 20/40 (50%) Query: 207 LGERELTLGGSGFVPLDYHHSEQEESTVTTAAPVPALNQI 246 LG GG LD H E+E +T TA +P LNQ+ Sbjct: 191 LGHFNRVEGGIIVETLDIQHIEEENNTTETAETLPGLNQL 230
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.0 bits (83), Expect = 2e-04 Identities = 72/396 (18%), Positives = 122/396 (30%), Gaps = 45/396 (11%) Query: 29 PLFVIMFIVNYLDRVNIGFVRPHLESDL------GISAAAFGFGAGLFFIGYALFEVPSN 82 PL VI+ V LD V IG + P L L A +G L+ + Sbjct: 6 PLIVILSTV-ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 83 MLLQKVGARLWLTRIMFTWGLVATAMAFVQNETQFYVLRFLLGVAEAGFFPGVIYYFTRW 142 L + G R L + + MA Y+ R + G+ A Y Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADI 123 Query: 143 LPAAERGKAIAIFLSGSALASLISGPLAGALMQIQGLGLHGWQWMLFIEGMASVALCFFV 202 ER + F+S +++GP+ G LM G H F A L F Sbjct: 124 TDGDERARHFG-FMSACFGFGMVAGPVLGGLM--GGFSPH----APFFAAAALNGLNFLT 176 Query: 203 FFWLDSKPQDAKWLSKAEQDALVATIDREQQAREAIGAVRPSAWSLLKDRQIVLFCLIYF 262 +L + K E+ L + + A + ++F Sbjct: 177 GCFLLPESH------KGERRPLRREALNPLASFRWARGMTVVAALM----------AVFF 220 Query: 263 CIQL-TIYAATFWLPSIIKRMGDLSDMQVGFFNSIPWLISILAMYAFAAGSARWKFQQAW 321 +QL A W+ R +G + ++ LA A ++ Sbjct: 221 IMQLVGQVPAALWVIFGEDRFH-WDATTIGISLAAFGILHSLAQAMITGPVAARLGERRA 279 Query: 322 VAGALLVAATGMFMS--TTGGPVFAFVAVCFAAIGFKSASSLFWPIPQGYLDARIAA--- 376 + ++ TG + T G + + V A+ G P Q L ++ Sbjct: 280 LMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGI------GMPALQAMLSRQVDEERQ 333 Query: 377 -AVIALINSVGNLGGFVAPTTFGLLEQQTGSIQGGL 411 + + ++ +L V P F + + + G Sbjct: 334 GQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGW 369
>PF04619#Dr-family adhesin Length = 160 Score = 27.6 bits (61), Expect = 0.034 Identities = 11/32 (34%), Positives = 13/32 (40%) Query: 204 ASDSGGWNDQGGQQQVADNGGWGSDQGGYADG 235 +D+ W G D G WG G Y DG Sbjct: 108 PTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDG 139
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 31.7 bits (72), Expect = 0.007 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 19/95 (20%) Query: 217 PFIHLTQALGALPSLLGFAVPD-EAMIRASGDSLPA-------LDVARQAWASWLLGVVL 268 P + A+ + LL VP +LP + A + + W+L +L Sbjct: 176 PCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALL 235 Query: 269 VYGLLPRLLLAGLCLWRWRQGRERLTLD---LGLP 300 + R++L RQ + R++ L LP Sbjct: 236 AGFMAFRVML--------RQEKRRVSFHRRLLHLP 262
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.9 bits (75), Expect = 0.003 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 5/153 (3%) Query: 254 FLMLAFIYFLIQVASYGLNFWAPQLIRSAGIESATTIGLLTAVP-YVCGAISMVLVGRLS 312 F++ +I G P +++ S IG + P + I + G L Sbjct: 258 FMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILV 317 Query: 313 DATGERRKFVCGLVIIGSIGFFSAGIF-EAHVLYLTVSLALLGAGIIASIPTFWSLPPKL 371 D G G+ + S+ F +A E ++T+ + + G+ + ++ Sbjct: 318 DRRGPLYVLNIGVTFL-SVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSS 376 Query: 372 LAGAGAGAAAGIALINTMGQVGGIVSPVMVGFI 404 L AGA L+N + +VG + Sbjct: 377 LKQQEAGAGMS--LLNFTSFLSEGTGIAIVGGL 407
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.004 Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 10/119 (8%) Query: 169 RLFGSREEDAQAGAELEPVALPAAEVVPQAA---GSAEPSRPDDVDALQPLPAPAAPTAE 225 L+ E + + P + + E +R D+ P PA + T E Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 226 -VAEAPELELEAFGPALIETAEMAPA-PLPRDKAPLPEAAVSVSEPLAEAEPLQVLEET 282 VAE + E + +E E +++ EA +V E Q ET Sbjct: 1039 TVAENSKQESKT-----VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 30.9 bits (70), Expect = 0.015 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 6 AFIALLRQIFYRPWMLATLAALASAAVLLSASIGIALQQMKQSESEQMNAQGERFL 61 IAL+ + + + ++L+ +G+ L+ +KQ ES+ E FL Sbjct: 383 GLIALVPTMALVGFGASQNFPFGGTSILI--IVGVGLETVKQIESQLQQRNYEGFL 436
>PF06580#Sensor histidine kinase Length = 349 Score = 54.1 bits (130), Expect = 6e-10 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 39/187 (20%) Query: 415 LETIG----EEMQRLTQLINDLLNFSRYQSGLQKLELAPCA-----IDDLLEHAQLRFAE 465 L I E+ + +++ L RY A +D L+ A ++F + Sbjct: 179 LNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFED 238 Query: 466 HAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRH----TANGGRIRLHARRHA 521 +++ +++P + +Q V + ++ L+ N I+H GG+I L + Sbjct: 239 -----RLQFENQINPAIMDVQ--VPPM--LVQTLVENGIKHGIAQLPQGGKILLKGTKDN 289 Query: 522 ERVIISVEDNGEGISYGQQARIFEPFVQVGRKKGGAGLGLALCKE-IVQLHGGRMGVF-- 578 V + VE+ G + K G GL +E + L+G + Sbjct: 290 GTVTLEVENTGSL--------------ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLS 335 Query: 579 SRPGQGT 585 + G+ Sbjct: 336 EKQGKVN 342
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 440 bits (1134), Expect = e-154 Identities = 162/476 (34%), Positives = 239/476 (50%), Gaps = 40/476 (8%) Query: 9 GRILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGL 68 IL+ DD++AI L GY V ++AA + DL D+ + ++N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 69 DVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQ 128 D+L +++ P + V++++A + TA+ A + GA DYL KP +L + L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 129 LSARLEALEGEVRKPKDGLDSHSPAMMAVLETARQVAITDANILILGESGTGKGELARAI 188 R LE + + L S AM + ++ TD ++I GESGTGK +ARA+ Sbjct: 124 --RRPSKLEDDSQDG-MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 189 HGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTLFLDEI 248 H + KR V IN ++ +L+ESELFGH +GAFTGA + GR QA+GGTLFLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 249 GDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFREDLLYRL 308 GD P+ Q +LLR +Q EY VG R+DVRI+AATN +L++ + + FREDL YRL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 309 NVITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWPGNIRELR 368 NV+ L LPPLR+R+EDI L F+ + KE + F EA + + WPGN+REL Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 369 NVVERASIICPQERVEISHL---------------------------------GMGEQPA 395 N+V R + + PQ+ + + Sbjct: 360 NLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASF 419 Query: 396 GNAPRVGAAL--SLDELERAHIGAVLA-ASDTLDQAAKTLGIDASTLYRKRKQYNL 448 G+A L E+E I A L +AA LG++ +TL +K ++ + Sbjct: 420 GDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.6 bits (173), Expect = 2e-16 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 2 PHILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGLPDISGF 61 IL+ +D+AAI L AL G+ + + DLV+ D+ +PD + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 ETCRQLR-RFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 118 + +++ ++PV+ +SA++ + + E GA DY+ KPF E+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 42.5 bits (100), Expect = 2e-06 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 31/185 (16%) Query: 298 IERESERLQQMIERLLNLARVEQMQALEDEQQVALAALVDEL-LLAHAARIE----GARL 352 I + + ++M+ L L R +L +L DEL ++ ++ RL Sbjct: 186 ILEDPTKAREMLTSLSELMR----YSLRYSNA-RQVSLADELTVVDSYLQLASIQFEDRL 240 Query: 353 QVRQRVPATLRLLCDPFLMRQALA-NLLDNALDFTPEGGTLLFDLERDGERVALSLFNQG 411 Q ++ + + P ++ Q L N + + + P+GG +L +D V L + N G Sbjct: 241 QFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 412 QAIPAYAIGRVSERFYSLPRPGSGRKSTGLGLNFVAEVMQLHGG---ALAVDNVDGGVRV 468 + ++STG GL V E +Q+ G + + G V Sbjct: 301 SLAL-----------------KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343 Query: 469 RLWLP 473 + +P Sbjct: 344 MVLIP 348
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.8 bits (69), Expect = 0.035 Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 342 QSDEIAFAGELADQFAQVITNHKRRAAASALHLFQRAVEQSASAFLLVNRDGRVE 396 SD++ + + Q + N A++ L + SA+ F L N+DG+V+ Sbjct: 494 LSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVD 548
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.003 Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 43 SMEIPAPKAGVIKELKVKLGDRLKEGDELLVLEAEGAAAAAPEAPAAAPAAAPAAEAAPA 102 S EI + ++KE+ VK G+ +++GD LL L A GA A + ++ A Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 103 APAAA 107 + Sbjct: 156 LSRSI 160
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 37.5 bits (87), Expect = 5e-06 Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 17/114 (14%) Query: 39 KLYERINHEMEEETQHADALMRRILMLEGTP---------DMRADDLEVGSTVPEMIEAD 89 L+E+ + + D + R+L + G P D ++ EM++A Sbjct: 45 TLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQAL 104 Query: 90 LKLEYKVRGALCKGIELCELHKDYVSRDILRAQLADTEEDHTYWLEKQQGLIKA 143 + ++ I L E ++D + D+ + + +EKQ ++ + Sbjct: 105 VNDYKQISSESKFVIGLAEENQDNATADLFVGLIEE--------VEKQVWMLSS 150
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 78.0 bits (192), Expect = 1e-17 Identities = 74/375 (19%), Positives = 141/375 (37%), Gaps = 58/375 (15%) Query: 33 MVLPV-LATYGMDLAGATPALIGLAIGAYGLTQAVLQIPFGMVSDRIGRRPVIYLGLVIF 91 MVL V L D PA A+ LT ++ +G +SD++G + ++ G++I Sbjct: 31 MVLNVSLPDIANDF-NKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIIN 89 Query: 92 ALGSVLAAQADSIWGV-IAGRILQGAG--AISAAVMALLSDLTREQHRTKAMAMIGMSIG 148 GSV+ S + + I R +QGAG A A VM +++ +++R KA +IG + Sbjct: 90 CFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVA 149 Query: 149 LSFAVAMVVGPLLTSAFGLSGLFLVTAGLALVGILLIAFVVPNTHSILQHRESGVARQAI 208 + V +G ++ S L L+ + L+ + Sbjct: 150 MGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEV---------------- 193 Query: 209 GPTLRHPDLLRLDISIFILHAVLMASFVALPLAFVERGGLPKEQHWWVYLTALFISFFAM 268 R+ I +LM+ + + F + +L +SF Sbjct: 194 ----------RIKGHFDIKGIILMSVGIVFFMLFT-------TSYSISFLIVSVLSFLIF 236 Query: 269 VPFIIYGEKKRKMKRVLAGAVSVLLLTEIYFWEWADGLRGLVIGTVVFFT--AFNLLEAS 326 V + +++V V L I F + G++ G ++F T F + Sbjct: 237 V---------KHIRKVTDPFVDPGLGKNIPF------MIGVLCGGIIFGTVAGFVSMVPY 281 Query: 327 LPSLVSKVSPAGGKGTAMGVYSTSQFLGAALGGILGGWLFQHGGLNTVFLGSAVLCAIWL 386 + V ++S A + + S + +GGIL + + G L + +G L +L Sbjct: 282 MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGIL---VDRRGPLYVLNIGVTFLSVSFL 338 Query: 387 IVALRMNEPPYVTSL 401 + + + ++ Sbjct: 339 TASFLLETTSWFMTI 353
>PERTACTIN#Pertactin signature. Length = 922 Score = 30.8 bits (69), Expect = 0.003 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 96 YTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQA 155 Y + + NG L+G + + P Q G G Q P Q Q PQ+ Sbjct: 548 YRYRLAANGNGQWSLVGAKAPPAPK---PAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQ 604 Query: 156 PQRPAPQQPAPQ 167 P+ PAPQ PA + Sbjct: 605 PEAPAPQPPAGR 616
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.4 bits (203), Expect = 6e-21 Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 16/247 (6%) Query: 2 KTAFVTGASSGFGRAICCTLIGKGYRVVG---GARRMDKLKALEDELGVNFIPLALDVTD 58 K AF+TGA+ G G A+ TL +G + +++K+ + + DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 59 PESLEKAVEQLREASLQIDLLVNNAGLALGVDRAQTSSAANWQQMIDTNITGLAMVTHKI 118 ++++ ++ ID+LVN AG+ L + S W+ N TG+ + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 119 LPQMVEADSGMIINIGSIAGTYPYPGGNVYGASKAFVRQFSLNLRADLAGTRVRVSNIEP 178 M++ SG I+ +GS P Y +SKA F+ L +LA +R + + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 179 GLCSGTDFSVVRLNGDLDAVQALYRDVEALL----------PEDIAATVAW-VAEQPAHV 227 G + TD + A Q + +E P DIA V + V+ Q H+ Sbjct: 188 G-STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 228 NINTIEI 234 ++ + + Sbjct: 247 TMHNLCV 253
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.005 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 14/74 (18%) Query: 346 ENLLRNAIRHSPTEGRVSLDGWREGACWHLRLSDQGPGVPDTDLERIFKPYQRLADSGAG 405 EN +++ I P G++ L G ++ L + + G E Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE--------------S 310 Query: 406 FGLGLAIARRAIEL 419 G GL R +++ Sbjct: 311 TGTGLQNVRERLQM 324
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 8e-22 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 TSLLLAEDDPRLLQDLDRHFRNRGFQVHACASGTQALNAIQQSQFELVLLDIMLPGIDGL 62 ++L+A+DD + L++ G+ V ++ I +LV+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 SLLDALR-RQQAVPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARVDALLRR 119 LL ++ + +PV++MSA I +GA DYLPKPF L EL + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 30.7 bits (69), Expect = 0.006 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 259 EVGLRLRYEIVRQFAPYIGVTWSRSYGKTADFIR 292 + L L Y + F PYIGV WSR+ AD IR Sbjct: 272 QASLALSYRL-NMFTPYIGVKWSRA-SFDADTIR 303
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 34.3 bits (78), Expect = 0.002 Identities = 22/72 (30%), Positives = 31/72 (43%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G +SMAG D S +AG ++ AG AG ++ A AG + AG D Sbjct: 963 GYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADS 1022 Query: 437 GSMAGMSKEMQS 448 +AG + S Sbjct: 1023 SLIAGYGSSLTS 1034 Score = 34.3 bits (78), Expect = 0.002 Identities = 23/70 (32%), Positives = 29/70 (41%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S + G + S +AG + A + MAG A S AG SMAG D S + Sbjct: 918 STSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLI 977 Query: 432 AGMDHGSMAG 441 AG AG Sbjct: 978 AGYGSTQTAG 987 Score = 34.0 bits (77), Expect = 0.002 Identities = 21/65 (32%), Positives = 29/65 (44%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G +S AG + S +AG ++ A MAG S+ A AG + MAG D Sbjct: 915 GYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDS 974 Query: 437 GSMAG 441 +AG Sbjct: 975 SLIAG 979 Score = 32.8 bits (74), Expect = 0.005 Identities = 24/87 (27%), Positives = 34/87 (39%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G + AG D S +AG ++ AG + AG ++ A AG + AG D Sbjct: 291 GYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDS 350 Query: 437 GSMAGMSKEMQSHPDSELNNPLVDMQT 463 +AG + DS L QT Sbjct: 351 SLIAGYGSTQTAGEDSSLTAGYGSTQT 377 Score = 32.4 bits (73), Expect = 0.006 Identities = 20/72 (27%), Positives = 29/72 (40%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S + G D S +AG + AG + AG A + AG + AG D S + Sbjct: 966 STSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLI 1025 Query: 432 AGMDHGSMAGMS 443 AG +G+ Sbjct: 1026 AGYGSSLTSGIR 1037 Score = 32.4 bits (73), Expect = 0.007 Identities = 21/78 (26%), Positives = 31/78 (39%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G + AG D S +AG ++ AG D AG ++ A AG + AG D Sbjct: 243 GYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADS 302 Query: 437 GSMAGMSKEMQSHPDSEL 454 +AG + +S Sbjct: 303 SLIAGYGSTQTAGEESTQ 320 Score = 32.0 bits (72), Expect = 0.009 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 381 SSMAGMDHSSM-AGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDHGSM 439 S+++G S + AG ++ AG +AG + AG D +AG ++ AG + M Sbjct: 166 STLSGTHQSQLIAGYGSTETAGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQM 225 Query: 440 AGMSKEMQSHPDSEL 454 AG S+L Sbjct: 226 AGYGSTQTGMKGSDL 240 Score = 31.6 bits (71), Expect = 0.011 Identities = 21/78 (26%), Positives = 32/78 (41%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G + AG D + +AG ++ AG + MAG ++ AG + AG D Sbjct: 195 GYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDS 254 Query: 437 GSMAGMSKEMQSHPDSEL 454 +AG + DS L Sbjct: 255 SLIAGYGSTQTAGEDSSL 272 Score = 31.6 bits (71), Expect = 0.012 Identities = 21/70 (30%), Positives = 27/70 (38%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S + G D S +AG + AG + AG A + G S AG D S + Sbjct: 822 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLI 881 Query: 432 AGMDHGSMAG 441 AG AG Sbjct: 882 AGYGSTQTAG 891 Score = 31.3 bits (70), Expect = 0.016 Identities = 23/70 (32%), Positives = 26/70 (37%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S G D S +AG + AG D S AG A AG AG D S + Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLI 305 Query: 432 AGMDHGSMAG 441 AG AG Sbjct: 306 AGYGSTQTAG 315 Score = 31.3 bits (70), Expect = 0.017 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGS----------MAGMDHSKMAGTDHG 421 S G D + +AG + AG + S+MAG +GS AG + AG D Sbjct: 198 STGTAGADSTLVAGYGSTQTAGEESSQMAG--YGSTQTGMKGSDLTAGYGSTGTAGDDSS 255 Query: 422 SMAGMDHSKMAGMDHGSMAGMSKEMQSHPDSEL 454 +AG ++ AG D AG + S+L Sbjct: 256 LIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDL 288 Score = 30.9 bits (69), Expect = 0.017 Identities = 19/70 (27%), Positives = 26/70 (37%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S + G D S +AG + AG + AG A + G S AG + S + Sbjct: 870 STSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLI 929 Query: 432 AGMDHGSMAG 441 AG A Sbjct: 930 AGYGSTQTAS 939 Score = 30.9 bits (69), Expect = 0.019 Identities = 22/78 (28%), Positives = 29/78 (37%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G S A S AG + MAG D +AG ++ AG AG ++ A Sbjct: 947 GYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSS 1006 Query: 437 GSMAGMSKEMQSHPDSEL 454 AG + DS L Sbjct: 1007 TLTAGYGSTATAGADSSL 1024 Score = 30.9 bits (69), Expect = 0.020 Identities = 24/99 (24%), Positives = 37/99 (37%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S G +S AG D S +AG ++ AG + AG ++ A + G + Sbjct: 862 SDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTST 921 Query: 432 AGMDHGSMAGMSKEMQSHPDSELNNPLVDMQTMTPTAKL 470 AG + +AG + S L QT + L Sbjct: 922 AGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSL 960 Score = 30.9 bits (69), Expect = 0.021 Identities = 19/59 (32%), Positives = 23/59 (38%) Query: 383 MAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDHGSMAG 441 G +S AG + S +AG A + MAG A S AG SMAG Sbjct: 913 TTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAG 971 Score = 30.1 bits (67), Expect = 0.030 Identities = 21/78 (26%), Positives = 29/78 (37%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G + A + MAG S+ A AG + MAG D +AG ++ AG Sbjct: 931 GYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQS 990 Query: 437 GSMAGMSKEMQSHPDSEL 454 AG + S L Sbjct: 991 TLTAGYGSTQTAEHSSTL 1008 Score = 30.1 bits (67), Expect = 0.033 Identities = 21/78 (26%), Positives = 31/78 (39%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G + AG D S AG ++ A AG + AG D +AG ++ AG + Sbjct: 259 GYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEES 318 Query: 437 GSMAGMSKEMQSHPDSEL 454 AG + S+L Sbjct: 319 TQTAGYGSTQTAQKGSDL 336 Score = 30.1 bits (67), Expect = 0.034 Identities = 23/77 (29%), Positives = 28/77 (36%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S + MAG S A S AG SMAG D S +AG AG + Sbjct: 934 STQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLT 993 Query: 432 AGMDHGSMAGMSKEMQS 448 AG A S + + Sbjct: 994 AGYGSTQTAEHSSTLTA 1010 Score = 29.7 bits (66), Expect = 0.042 Identities = 21/87 (24%), Positives = 31/87 (35%) Query: 377 GMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKMAGMDH 436 G + AG D S +AG ++ A AG ++ A G + AG D Sbjct: 579 GYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADS 638 Query: 437 GSMAGMSKEMQSHPDSELNNPLVDMQT 463 +AG + +S L QT Sbjct: 639 SLIAGYGSTQTAGYNSILTAGYGSTQT 665 Score = 29.7 bits (66), Expect = 0.049 Identities = 19/62 (30%), Positives = 24/62 (38%) Query: 372 SMNDMGMDHSSMAGMDHSSMAGMDHSKMAGMDHGSMAGMDHSKMAGTDHGSMAGMDHSKM 431 S G D S AG + A AG AG D S +AG AG + ++ Sbjct: 262 STQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQT 321 Query: 432 AG 433 AG Sbjct: 322 AG 323
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 8e-04 Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 64 DEAHLLNITVKPENQGCGLGLRLLEHLMARAYQLNGRECFLEVRASNQSAYRLYERYGF 122 A + +I V + + G+G LL + A + + LE + N SA Y ++ F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 30.2 bits (68), Expect = 0.012 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 261 ATDMPLRQVLERLAGYQGQRLWMMDEHVAHRRVSGDFNLDRPGQSLQSLAAAQQLQ 316 A LR +L + + D + +VSG F D P LQ +A+ L Sbjct: 40 AKGESLRDLLTDFGANYDATVVVSD--KINDKVSGQFEHDNPQDFLQHIASLYNLV 93
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 7e-05 Identities = 54/270 (20%), Positives = 100/270 (37%), Gaps = 14/270 (5%) Query: 38 LIQSVLPAIYPMLKANYDLSFAQIGMITLTFQITASLLQPWVGFFTDRRATPNLLPLGTL 97 LI VLP + L + D++ A G++ + + P +G +DR +L + Sbjct: 23 LIMPVLPGLLRDLVHSNDVT-AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 98 CTLVGIVMLAFVGSFPMILLASALVGIGSSTFHPETSRIARLASGGR----FGLAQSTFQ 153 V ++A ++ + + GI +T + IA + G FG + F Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 154 VGGNTGSALGPLLAAAIV-IPFGQTHVAWFGLAGLFFLGVTLMLRGWYKEHLNQAKARKA 212 G G LG L+ PF A L GL FL +L +K + R+A Sbjct: 142 FGMVAGPVLGGLMGGFSPHAPF----FAAAALNGLNFLTGCFLLPESHKGERRPLR-REA 196 Query: 213 VQATHGISRNRVIAALIVLGLLVFSKYFYMASFTSYFTFYLIEKFGVSVASSQLHLFLF- 271 + R + + L + F + + + ++F + + L F Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFG 256 Query: 272 -LGAVAAGTFFGGPIGDRIGRKAVIWFSIL 300 L ++A GP+ R+G + + ++ Sbjct: 257 ILHSLAQAMIT-GPVAARLGERRALMLGMI 285 Score = 31.3 bits (71), Expect = 0.007 Identities = 21/90 (23%), Positives = 35/90 (38%) Query: 281 FGGPIGDRIGRKAVIWFSILGVAPFTLALPYADLFWTTVLSVVIGFILASAFSAIVVYAQ 340 G + DR GR+ V+ S+ G A + A W + ++ I + + Y Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 341 ELVPGSVGMIAGIFFGLMFGFGGIGAALLG 370 ++ G F FGFG + +LG Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLG 151
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.9 bits (101), Expect = 2e-06 Identities = 75/341 (21%), Positives = 130/341 (38%), Gaps = 21/341 (6%) Query: 24 LPLVSLRLHEAGASTLEIGIISAIPAAGMMLSAFLVDVCCRHLTRRTIYLLCFSLCTVSI 83 LP + L + T GI+ A+ A A ++ RR + L+ + V Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 84 ALLESAFGSLWLLALLRLGLGL-GMGIAIILGESWVKELCPEHNRGKIMALYATSFTGFQ 142 A++ +A LW+L + R+ G+ G A+ +++ ++ R + + F Sbjct: 88 AIMATA-PFLWVLYIGRIVAGITGATGAVAG--AYIADITDGDERARHFGFMSACFGFGM 144 Query: 143 VLGPAMLAVLGADSPWITGVV-TVCYGLALLCIVLTVPNDHVEHEEGEKSFG---LAGFF 198 V GP + ++G SP GL L +P H + LA F Sbjct: 145 VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFR 204 Query: 199 RVAPALCMAVLFFSFFDAVVLSLLP----VYATSHGFA--VGVAALMVTVVFAGDMLFQL 252 +A L FF ++ +P V F + + L Q Sbjct: 205 WARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 253 PL-GWLADRV-ERTGLHLACGLVAMVIGIGLPWLLNLTWLLWPLLVVLGAVAGGIYTLAL 310 + G +A R+ ER L L G++A G L W+ +P++V+L +GGI AL Sbjct: 265 MITGPVAARLGERRALML--GMIADGTGYILLAFATRGWMAFPIMVLLA--SGGIGMPAL 320 Query: 311 -VLIGQRFKGQDLVTANASVGLLWGVGSLVGPLVSGAAMNV 350 ++ ++ + S+ L + S+VGPL+ A Sbjct: 321 QAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 0.027 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 14/119 (11%) Query: 40 AAEAPALDENASLEQLSDR---LDLIRQGVTSEANDDVLS-------QLRLGAM----QV 85 A + L Q S + LD + + ++ AND + + + R+GA + Sbjct: 228 AEMKTLAGKRNELAQASAKYKELDELVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEK 287 Query: 86 QRQADALSTQRTADVGKLDDQLKVIGPAQPDEAATLTQQRKALEAEKKALVAQQDQATK 144 Q+Q A T+ + K I + A + + +A E KKA + K Sbjct: 288 QKQVTASETRINRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIK 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 5e-10 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 7/138 (5%) Query: 10 LIVDDFTDFRTSTRSMLRELGVRDVDTADSGEQALRMCAQKRYDFILQDFHLGDGKKNGQ 69 L+ DD RT L G DV + R A D ++ D + D N Sbjct: 7 LVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDE--NAF 63 Query: 70 QVLEDLIIDKHISHECVFIMVTAESSQAIVLSAIEHEPDAYLTKPFNRVGLAQRVEK-LF 128 +L + K + ++++A+++ + A E YL KPF+ L + + L Sbjct: 64 DLLPRI---KKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 129 QRKTLLKPILQALDRNRP 146 + K + P Sbjct: 121 EPKRRPSKLEDDSQDGMP 138
>PF06580#Sensor histidine kinase Length = 349 Score = 32.5 bits (74), Expect = 0.001 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 20/95 (21%) Query: 137 ATRFAGHALLITIEEADNQLAICVNDDGPGYPKHMLERQEDYIQGIDSTSGSTGLGLYFA 196 A G +L+ + + + + V + G + +T STG GL Sbjct: 273 AQLPQGGKILLKGTKDNGTVTLEVENTGSL--------------ALKNTKESTGTGLQNV 318 Query: 197 -ARIAALHESGGVRGRIEISNGGALGGGLFRLFLP 230 R+ L+ G +I++S G + +P Sbjct: 319 RERLQMLY---GTEAQIKLSE--KQGKVNAMVLIP 348
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 105 bits (263), Expect = 7e-29 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 17/176 (9%) Query: 70 NNRGKGALIGAAA-VGAAAAGYGY-YADKQEAELRAQMANTGVEVQRQGDQIKLIMPGNI 127 NN G IG G + G Y + + A + A EVQ + + ++ Sbjct: 166 NNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTK----HFTLKSDV 221 Query: 128 TFATDSANIAPSFYSPLNNLAGSFKQFN--QNTIEVVGFTDSTGSRQHNMDLSQRRAQAV 185 F + A + P + L+ L + ++ V+G+TD GS +N LS+RRAQ+V Sbjct: 222 LFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSV 281 Query: 186 STYLTSQGVDASRISVRGMGPDQPIASNADANGR---------AQNRRVEVNLKPI 232 YL S+G+ A +IS RGMG P+ N N + A +RRVE+ +K I Sbjct: 282 VDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 27.6 bits (61), Expect = 0.017 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 4 AANKAVSIDYTLTNDAGETIDSS-AGGAPLVYLHGAGNIIPGLEKALEGKQAGDELNVSI 62 + V+++YT T G DS+ G P + +IPG +AL+ AG V + Sbjct: 142 GKSDTVTVEYTGTLIDGTVFDSTEKAGKPATF--QVSQVIPGWTEALQLMPAGSTWEVFV 199 Query: 63 EPEEAYG 69 + AYG Sbjct: 200 PADLAYG 206
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.7 bits (77), Expect = 0.001 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 3/101 (2%) Query: 53 LCLMLATYPVSRLMSRIGRKKAFMLGAIPLALSGISGFLAVEHQHFPTLVLSHSALGV-Y 111 L + T +L ++G K+ + G I + GF V H F L+++ G Sbjct: 60 LTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGF--VGHSFFSLLIMARFIQGAGA 117 Query: 112 IAFANFNRFAATDNLSQALKPKALSLVVAGGVIAAVVGPTL 152 AF + + + KA L+ + + VGP + Sbjct: 118 AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158
>SECA#SecA protein signature. Length = 901 Score = 58.3 bits (141), Expect = 4e-14 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 23 GHVHGPHCNHGTQEPVRNALKDVGRNDPCPCGSEKKYKKCHG 64 H + + VGRNDPCPCGS KKYK+CHG Sbjct: 858 SHQDDDS-AAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHG 898
>PERTACTIN#Pertactin signature. Length = 922 Score = 32.4 bits (73), Expect = 8e-04 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Query: 62 HLRVDNPNDSRLFIRNVSYAIRLNDLLLVQDEAS----VW-RSVGGHA 104 L VD S LF NV + L+D L+V +AS +W R+ G Sbjct: 468 VLMVDTLAGSGLFRMNVFADLGLSDKLVVMRDASGQHRLWVRNSGSEP 515
>SECA#SecA protein signature. Length = 901 Score = 47.9 bits (114), Expect = 3e-09 Identities = 14/22 (63%), Positives = 16/22 (72%) Query: 133 KAGRNDPCPCASGHKFKKCCAS 154 K GRNDPCPC SG K+K+C Sbjct: 878 KVGRNDPCPCGSGKKYKQCHGR 899 Score = 28.7 bits (64), Expect = 0.010 Identities = 8/14 (57%), Positives = 8/14 (57%) Query: 6 CPCGSGNLLDACCG 19 CPCGSG C G Sbjct: 885 CPCGSGKKYKQCHG 898
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 119 bits (299), Expect = 3e-34 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 11/139 (7%) Query: 101 PPEPVAVVEEVVVQKEEVIVIRDVHFEFDSARLTASDKERLNTIATRLKQ-EAPSARLSV 159 P A VQ + + DV F F+ A L + L+ + ++L + + V Sbjct: 198 PVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVV 257 Query: 160 SGHTDSVGSDSYNQKLSERRAHSVTDYLVESGVPRSSFVSVVGAGETQPVADNATAEGR- 218 G+TD +GSD+YNQ LSERRA SV DYL+ G+P +S G GE+ PV N + Sbjct: 258 LGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADK-ISARGMGESNPVTGNTCDNVKQ 316 Query: 219 --------AMNRRTEIKIQ 229 A +RR EI+++ Sbjct: 317 RAALIDCLAPDRRVEIEVK 335
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 122 bits (308), Expect = 2e-35 Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 13/140 (9%) Query: 113 PAAPPASAPEPSPEVIT--LDDNGAVMFAFDSAELTLAAQQRLQGLVAKL--NSPTVTKV 168 A A AP P+PEV T V+F F+ A L Q L L ++L P V Sbjct: 196 AAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSV 255 Query: 169 RVIGHTDGVGSDSYNQALSERRASSVAEYLIGQGLEMGKVTSQGRGESEPVTDNETEEGR 228 V+G+TD +GSD+YNQ LSERRA SV +YLI +G+ K++++G GES PVT N + + Sbjct: 256 VVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVK 315 Query: 229 AR---------NRRVELHLN 239 R +RRVE+ + Sbjct: 316 QRAALIDCLAPDRRVEIEVK 335
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 28.1 bits (62), Expect = 0.004 Identities = 13/46 (28%), Positives = 19/46 (41%) Query: 43 FGLHLLEVLFFNRSLRGRSHRWFDRLQILLTGIFHVMSIPRPREAP 88 LHLL + R WF R ++T + + +P R AP Sbjct: 180 ISLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRVPHDRSAP 225
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 54.6 bits (131), Expect = 1e-10 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 158 PKTAVLVLGHADSSGAAVANQKLSLERAASVSAIFRLSGLQRDRLTLKGMGSVMPRAAN- 216 +V+VLG+ D G+ NQ LS RA SV G+ D+++ +GMG P N Sbjct: 251 KDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310 Query: 217 -DSAEGR-------ALNRRVE 229 D+ + R A +RRVE Sbjct: 311 CDNVKQRAALIDCLAPDRRVE 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 2e-18 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 6 PRILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLMLPGEDGL 65 IL+ +DD + + + L G++V + ++ A R I DLV+ D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 SICRRVRSQYQG-PILMLTARSDELDQVQGLDLGADDYVCKP-VRPRLLLARIQALLRRS 123 + R++ P+L+++A++ + ++ + GA DY+ KP L+ +AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 124 ETVDSKRQDLAFGALRI 140 D G + Sbjct: 124 RRPSKLEDDSQDGMPLV 140
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.002 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 23/106 (21%) Query: 430 LQNLVGNAMRHA------ESEVRLSYQLGQQRCRIDVEDDGPGIPEGFWDRIFTPFTRLD 483 +Q LV N ++H ++ L ++VE+ G + Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------- 306 Query: 484 DSRTRASGGHGLGLSIVRRIIYWHAGRATVGRSDALGGACFSLNWP 529 T+ S G GL ++ R+ + A + S+ G + P Sbjct: 307 ---TKESTGTGL-QNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 98.9 bits (246), Expect = 2e-27 Identities = 73/225 (32%), Positives = 107/225 (47%), Gaps = 16/225 (7%) Query: 11 LQHHWPLPRPLPGAVLVSCAFDPAHLAADDFQRAGVLPSASLLRS-VPKRQAEYLAGRVC 69 L H+PLP G L FD + D LP LRS KR+AE+LAGR+ Sbjct: 2 LTSHFPLP--FAGHRLHIVDFDASSFREHDLL---WLPHHDRLRSAGRKRKAEHLAGRIA 56 Query: 70 ARAALQHLDGRDYVPGTHEDRSPIWPAGIHGSITHGKGWAAAVVAGENSCQGLGLDQEAL 129 A AL+ + G VPG + R P+WP G+ GSI+H A AV+ S Q +G+D E + Sbjct: 57 AVHALREV-GVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVI----SRQRIGIDIEKI 111 Query: 130 LDDARAERLMGEILTPAELERLDRRQLG--LTVTLTFSLKESLFKTLYPLTRQRFYFEHA 187 + A L I+ E + L L L +TL FS KES++K + F A Sbjct: 112 MSQHTATELAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSA 170 Query: 188 EVLDWSAEGLARLRLLTDLSPQWQQGAELQGQFCLQDGHLLSLVS 232 +V +A L LL + + ++ ++ +D +++LVS Sbjct: 171 KVTSLTA-THISLHLLPAFAATMAE-RTVRTEWFQRDNSVITLVS 213
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 28.4 bits (63), Expect = 0.021 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 14/171 (8%) Query: 2 KTFNTLLAAMAVCAAGITTAQAADDNFASLTYGQTS----DKVRKSGLLQRNTDQLNADG 57 KT + A+A A A + + G + + +G N A G Sbjct: 3 KTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFG 62 Query: 58 IIGKDDTWGVRLGKINDQGRYYMTYDNVSGDHS--GLKLRQENLLGSYDLFLPVGDTTKL 115 + G +G + GR +G + G++L Y P+ D + Sbjct: 63 GYQVNPYVGFEMG-YDWLGRMPYKGSVENGAYKAQGVQL---TAKLGY----PITDDLDI 114 Query: 116 FGGGSLGVTKLTQDSPGASRDTDYGYAYGLQAGVIQDITDKASVELGYRYL 166 + V + S ++ D G + GV IT + + L Y++ Sbjct: 115 YTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT 165
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 3e-21 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 2 KLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGLE 61 +LV +D+A +R L L +G+ V ++A DL + D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEE-LEARLNALLRRSS 120 L+ R++ P+L+++A+ + ++ GA DYL KPF E + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.025 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 20/72 (27%) Query: 355 LLENAYR------LSLGQVRVSLVKAPGYLTLCIEDDGPGVPADQRERILERGERLDSQH 408 L+EN + G++ + K G +TL +E+ G L + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--------------LKNTK 308 Query: 409 PGQGIGLAVVKD 420 G GL V++ Sbjct: 309 ESTGTGLQNVRE 320
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 2e-04 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 24/115 (20%) Query: 327 PGLSLQGWPTLIERAVDNLLRNALRFNPAGQPVEVSAAREQDRIVISVRDHGPGAAAEHL 386 P + +Q TL+E + ++ + P G + + ++ + + V + G A Sbjct: 256 PPMLVQ---TLVENGI----KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL---- 304 Query: 387 AQLGEPFFRAPGQEAPGHGLGLA-IARKAAERHGGSLVLE-NHPQGGFVARLELP 439 G GL + + +G ++ + QG A + +P Sbjct: 305 -----------KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.0 bits (62), Expect = 0.012 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 1 MRKTLIALMFAAALPTVAMA 20 M+K+LIAL AALP AMA Sbjct: 1 MKKSLIALTL-AALPVAAMA 19
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.1 bits (247), Expect = 3e-26 Identities = 37/116 (31%), Positives = 60/116 (51%) Query: 4 LLLIDDDQELCELLGSWLTQEGFSVRACHDGQSARLALAEHAPAAVVLDVMLPDGSGLEL 63 +L+ DDD + +L L++ G+ VR + + +A VV DV++PD + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LKQLRSEHAELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119 L +++ +LPVL++SA+ + I E GA DYL KP D EL + L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 27.3 bits (60), Expect = 0.011 Identities = 11/44 (25%), Positives = 15/44 (34%) Query: 54 AGFSGSLIVAEFESLAAAQTWADADPYIAAGVYDKVVVKPFKQV 97 G GS+ E + A W +P A V V +V Sbjct: 279 IGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 5e-05 Identities = 8/38 (21%), Positives = 21/38 (55%) Query: 108 NVNVVEEMADMISASRAFQTNAELMNTAKSMMQKVLTL 145 VN+ EE ++ + + NA+++ TA ++ ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 31.9 bits (72), Expect = 8e-04 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 25/152 (16%) Query: 4 SSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGSSQS 63 SS+ N A SG++A LNT ++NI++ + R + Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYT-------RQTTIMAQANSTLGA---- 49 Query: 64 LFEDQGEAGQGVQVKGI--VEDQSTLEARYEPNHPAANKDGYVYYPNVNVVEEMADMISA 121 G G GV V G+ D ++ Y ++ ++ M ++ Sbjct: 50 ----GGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTA--RYEQMSKIDNMLSTSTS 103 Query: 122 SRA------FQTNAELMNTAKSMMQKVLTLGQ 147 S A F + L++ A+ + +G+ Sbjct: 104 SLATQMQDFFTSLQTLVSNAEDPAARQALIGK 135
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 48.4 bits (115), Expect = 5e-08 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKASRAEFADVYAGANRLGVGKNQVGNGVR 61 N +SGL AA L+ NNI++ N G+ A + LG G VGNGV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA---QANSTLGAGGW-VGNGVY 58 Query: 62 LAAISQQFTQ 71 ++ + +++ Sbjct: 59 VSGVQREYDA 68 Score = 43.8 bits (103), Expect = 1e-06 Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 536 AIESNSLEGSNVNLTQELVDLIKAQSYYQANAKTISTESTVMQTIIQM 583 + + S VNL +E +L + Q YY ANA+ + T + + +I + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.6 bits (100), Expect = 1e-06 Identities = 12/44 (27%), Positives = 21/44 (47%) Query: 216 QQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLSFVTQ 259 Q S V+ EE N+ Q+ Y N++V+ TA+ + + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 38.0 bits (88), Expect = 3e-05 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 14/75 (18%) Query: 5 LWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDSELPS 64 + A +GL+A L SNN+++ + G+ R + +S L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT--------------IMAQANSTLGA 49 Query: 65 GLQVGTGVRIVGTQK 79 G VG GV + G Q+ Sbjct: 50 GGWVGNGVYVSGVQR 64
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 197 bits (503), Expect = 7e-66 Identities = 84/221 (38%), Positives = 113/221 (51%), Gaps = 15/221 (6%) Query: 16 LAGCVAPTPKPNDPYYAPVLPRTPLPAAANNGSIYQAGF-----EQNLYSDRKAFRVGDI 70 L GC P P P P NGSI+Q+ Q L+ DR+ +GD Sbjct: 19 LTGCAWIPSTPLVQGATSAQP-VPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDT 77 Query: 71 ITITLNERTSASKNAGSQIAKTSKTDIGLTSLFGTTPN-TNNPFGGGDLSLEAGYSGDRA 129 +TI L E SASK++ + ++ KT+ G F T P FG +E SG Sbjct: 78 LTIVLQENVSASKSSSANASRDGKTNFG----FDTVPRYLQGLFGNARADVE--ASGGNT 131 Query: 130 TKGDSKATQGNTLTGSITVTVAEVLPNGIIAVRGEKWLTLNTGEELVRIAGMIRADDIAT 189 G A NT +G++TVTV +VL NG + V GEK + +N G E +R +G++ I+ Sbjct: 132 FNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 191 Query: 190 DNTVPSTRVADARITYSGTGSFADASQPGWLDRFFI--SPL 228 NTVPST+VADARI Y G G +A GWL RFF+ SP+ Sbjct: 192 SNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 449 bits (1156), Expect = e-160 Identities = 166/366 (45%), Positives = 223/366 (60%), Gaps = 10/366 (2%) Query: 7 LIATTLLLSCAFAAQAERLKDIASISGVRSNQLIGYGLVVGLNGTGDQTTQTPFTLQTFN 66 A L + A R+KDIAS+ R NQLIGYGLVVGL GTGD +PFT Q+ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 67 NMLSQFGIKVPAGSGNVQLKNVAAVSVHADLPPFAKPGQVVDITVSSIGNSKSLRGGSLL 126 ML GI G N KN+AAV V A+LPPFA PG VD+TVSS+G++ SLRGG+L+ Sbjct: 73 AMLQNLGITTQGGQSNA--KNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 127 MTPLKGIDGNVYAIAQGNLVVGGFDAEGRDGSKITVNVPSAGRIPGGASVERAVPSGFNQ 186 MT L G DG +YA+AQG L+V GF A+G D + +T V ++ R+P GA +ER +PS F Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKD 189 Query: 187 GNTLTLNLNRPDFTTAKRIVDKVNDL----LGPGVAQAVDGGSVRVSAPMDPSQRVDYLS 242 L L L PDF+TA R+ D VN G +A+ D + V P + ++ Sbjct: 190 SVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLMA 248 Query: 243 ILENLEIDPGQAVAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVTITEDPIVSQPGAFS 302 +ENL ++ AKV+IN RTGTIVIG +V++S AV++G+LTV +TE P V QP FS Sbjct: 249 EIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFS 307 Query: 303 NGQTAVVPRSRVNAEQEAKPMFKFGPGTTLDEIVRAVNQVGAAPGDLMAILEALKQAGAL 362 GQTAV P++ + A QE + G L +V +N +G ++AIL+ +K AGAL Sbjct: 308 RGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGAL 366 Query: 363 QADLIV 368 QA+L++ Sbjct: 367 QAELVL 372
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 143 bits (362), Expect = 5e-42 Identities = 72/162 (44%), Positives = 99/162 (61%), Gaps = 1/162 (0%) Query: 210 AQPPLAPNKAFGDSDEFVATMLPMAEQAAKRIGIDPRYLVAQAALETGWGKSVMRNTDGS 269 A P + GDS F+A + A+ A+++ G+ ++AQAALE+GWG+ +R +G Sbjct: 136 AVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGE 195 Query: 270 SSHNLFGIKATGNWDGGEARAITSEYRDGQFVKETAAFRSYDSYQDSFHDLVSLLQNNSR 329 S+NLFG+KA+GNW G T+EY +G+ K A FR Y SY ++ D V LL N R Sbjct: 196 PSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPR 255 Query: 330 YQDAVKAADKPEQFVQELQKAGYATDPNYASKISQIARQMKS 371 Y AV A EQ Q LQ AGYATDP+YA K++ + +QMKS Sbjct: 256 YA-AVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQMKS 296 Score = 65.5 bits (159), Expect = 4e-14 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 18/208 (8%) Query: 2 NSKSLVSGSADSGAYTDLNRLSSLKHGDRDSDANVRKVAQEFESLFISEMLKASRKASDV 61 +SK L S + D+ + LN L + K G+ D AN+R VA++ E +F+ MLK+ R D Sbjct: 4 DSKLLASAAWDAQS---LNELKA-KAGE-DPAANIRPVARQVEGMFVQMMLKSMR---DA 55 Query: 62 LADDNPMNTETVKQYRDMYDQQLAVSMSREGGGIGLQDVLVRQLSKNKASQASTSPFPRT 121 L D ++E + Y MYDQQ+A M+ G G+GL +++V+Q++ + ++P Sbjct: 56 LPKDGLFSSEHTRLYTSMYDQQIAQQMT-AGKGLGLAEMMVKQMTPEQPLPEESTPAAPM 114 Query: 122 EGNAPALWGNKVAEPVHATQSTATRNDVAALNA------RRLALPSKLTDRLLAGIVPSS 175 + + + Q RN +L +L+LP++L + VP Sbjct: 115 KFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSG--VPHH 172 Query: 176 ATANTATVPARDGQ-QVAKAFAVPDNGL 202 A + + GQ Q+ + P L Sbjct: 173 LILAQAALESGWGQRQIRRENGEPSYNL 200
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 217 bits (555), Expect = 7e-65 Identities = 146/466 (31%), Positives = 245/466 (52%), Gaps = 15/466 (3%) Query: 2 ASLINIGMSGLGAAQSGMYTLGNNIANADVESYSRQQNVQKTKGGQQVGQVFIGSGTTLA 61 +SLIN MSGL AAQ+ + T NNI++ +V Y+RQ + ++G+G ++ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 62 DVRRVYNAFIENQLRTTTSLSSEASSYLDQITPLDTSLSSSDTGITAALQSFFTSMQDAA 121 V+R Y+AFI NQLR + SS ++ +Q++ +D LS+S + + +Q FFTS+Q Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 122 AKPTEDASRQLLLTSAQSLAKRFNTLSSQLNQQLSNINSNMTAITDQVNNLTKTIAGLNE 181 + + A+RQ L+ ++ L +F T L Q +N + A DQ+NN K IA LN+ Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 182 QIARVGAVSGQ--PNDLLDQRDGAVRELNKLIGTDV-VERDGTYDVYLKNGQALVLGNTT 238 QI+R+ V PN+LLDQRD V ELN+++G +V V+ GTY++ + NG +LV G+T Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 239 QTVGVEPTASDPGRLSLVLNRGSTKMDITSSA--TGGELGGLIRYRSETLDPALNELGRV 296 + + P+++DP R ++ G+ G LGG++ +RS+ LD N LG++ Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300 Query: 297 ALVVADQINSQLAQGIDKDGNFGATLFGDINSAKAMSERSVAKLGNSIGSGNLDVSIKDT 356 AL A+ N+Q G D +G+ G F A+ + +V + + G + ++ D Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFF-------AIGKPAVLQNTKNKGDVAIGATVTDA 353 Query: 357 GKLTTSDYQVTFTSATGYSVRKLPEGTEMGSYDLNDTPPPVIDGFTLSLNGGGLSAGDSF 416 + +DY+++F + R T + D N DG L+ G + DSF Sbjct: 354 SAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGK--VAFDGLELTF-TGTPAVNDSF 410 Query: 417 KITPTRNAAANIETVLTDPKRLALASPLTATNGAGNKGTGVITQPT 462 + P +A N++ ++TD ++A+AS A + G ++ + Sbjct: 411 TLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQS 456 Score = 80.4 bits (198), Expect = 7e-18 Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 4/109 (3%) Query: 566 AGSADNRNAQSVIDLQTKSTVEVGANGKGISFTDAYAKLVSNVGGKAGQAEMDSDATNAL 625 AG +DNRN Q+++DLQ+ S G SF DAYA LVS++G K + S + Sbjct: 440 AGDSDNRNGQALLDLQSNSKT----VGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNV 495 Query: 626 HSSALDSRNSLSGVSVDEEVGNLVKFQQYYTASSQIIKAAQETFTTLIN 674 + + + S+SGV++DEE GNL +FQQYY A++Q+++ A F LIN Sbjct: 496 VTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLAGELLIN#Flagellin signature. Length = 507 Score = 70.5 bits (172), Expect = 4e-15 Identities = 83/514 (16%), Positives = 157/514 (30%), Gaps = 24/514 (4%) Query: 1 MRISTSQFYNSNSANYQRSFSNLDKTRQEASDGIRVRRGADDPVGAARLLQLQQQQNMLD 60 I+T+ N +S S+L + S G+R+ DD G A + L Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QYTRNVTNVRNALGTAESTLNAIGTILQRVNELAISSGNAGFTDADRKANATELASLEDQ 120 Q +RN + + T E LN I LQRV EL++ + N +D+D K+ E+ ++ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 LFSLMNSKDESGAYLFSGSKGDKPPYVRNADGTYTYQGDQGKLNLQVGDMLTLAANETGY 180 + + N +G + S K N T T + + D + + Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 181 DAFEQALNTSRSETSLVSPATDDGRVNLSNGQVSGSATYNDRFRSGEPYTIEFTSSTQFK 240 ++ + + + + RV++++G V T + + + Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAV---VTDTTAPTVPDKVYVNAANGQLTT 238 Query: 241 ITDAEGKDV---TLEASQGGTFDPNGKNTTINFRGVDLRLDITLQEGDAADPDAAIAGHV 297 V S GT + I D Sbjct: 239 DDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGK 298 Query: 298 FSLSSKADEISGTRSAGNSSSAQVTGATITDAQKYKSAFPEGAVLKFTSATEFELYASPV 357 S + ++++ T + + +A V AT+ ++ ++ G A Sbjct: 299 VSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNE--SAKLS 356 Query: 358 SADSKPISKGTLSGNTATAMGVEFTLSDTPSAGDSFGIKVDTHQTQNVLDTISQLRAALA 417 ++ KG A D + T + L A Sbjct: 357 DLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAK-- 414 Query: 418 TPVDNDPAARQSFLASLDSAIGNIASATNQVSSSISSIGGRGQAIDVQVETNEALSGENA 477 S + + +I SA ++V + SS+G D + Sbjct: 415 --------------KSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLN 460 Query: 478 KTQSSIRESDPAEVMIRLQMQSNMLQASLQAYAK 511 +S I ++D A + + + QA A+ Sbjct: 461 SARSRIEDADYATEVSNMSKAQILQQAGTSVLAQ 494
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 102 bits (256), Expect = 7e-27 Identities = 72/343 (20%), Positives = 136/343 (39%), Gaps = 35/343 (10%) Query: 10 RVFLTGHSGFKGGWLALCLREMGAEVYGY-SLAPDTSPSLYGSARLAECVAGEF----AD 64 + +TG +GF G ++ L E G +V G +L SL ARL F D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSL-KQARLELLAQPGFQFHKID 60 Query: 65 VRDADRLLRSVAAFRPEIVLHLAAQPLVRESYRSPAQTYATNVIGTLNLLEAVRKCDAVR 124 + D + + A+ E V + VR S +P +N+ G LN+LE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK-IQ 119 Query: 125 AVLVVTSDKCYENREWQWPYREQDALGGH--DPYSSSKACVELLCASWRESFLRERGVAL 182 +L +S Y + P+ D++ H Y+++K EL+ ++ + G+ Sbjct: 120 HLLYASSSSVYGLNR-KMPFSTDDSV-DHPVSLYAATKKANELMAHTYSHLY----GLPA 173 Query: 183 ATARAGNVIGGGDWS-ADRLLPDILRAWEAGESVTL-RYPDAVRPWQHVLDPLEGYLLLA 240 R V G W D L +A G+S+ + Y R + ++ D E + L Sbjct: 174 TGLRFFTVY--GPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231 Query: 241 QALIERGQDVA-------------EAWNFGPDSGGTATVGELVHAMAQLWPGEAGWSVDP 287 + +N G + + + + A+ EA ++ P Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIG--NSSPVELMDYIQALEDALGIEAKKNMLP 289 Query: 288 YVQPHEAGLLTLDSSRARQRLGWRPKWGLKQSLRHTLEWHRAW 330 +QP + + D+ + +G+ P+ +K +++ + W+R + Sbjct: 290 -LQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 507 bits (1306), Expect = e-180 Identities = 177/488 (36%), Positives = 255/488 (52%), Gaps = 10/488 (2%) Query: 5 TKILLIDDDSARRRDLAVVLNFLGEENLACASHDWQQAVEPLSSSREVLCVLIGTVNAPG 64 IL+ DDD+A R L L+ G + ++ +++ + V+ V Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNA--ATLWRWIAAG-DGDLVVTDVVMPDE 60 Query: 65 NLLGLLKTVATWDEFLPVLLLGEISSAELP-EDLRRRVLSNLEMPPSYSQLLDSLHRAQV 123 N LL + LPVL++ ++ + + L P ++L+ + RA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 124 YREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVV 183 + R + + LVG S A+Q + +++ ++ TD +++I GESGTGKE+V Sbjct: 121 EP----KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 184 ARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243 AR LH + KRR PFV +N AIP +L+ESELFGHEKGAFTGA T GRFE A GGTLF Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEDGTFREDL 303 LDEIGDMP+ Q +LLRVLQ+ + VG DVRI+AAT+K+L+ I G FREDL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 304 YYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPGNVR 363 YYRLNV P+ + PLR+R EDIP L+ + + E E RF+ ++ + H WPGNVR Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 364 ELANLVERMAIMHPYGVIGVSELPKKFRY-VDDEDEQMVDSLRSDLEERVAINGHTPN-F 421 EL NLV R+ ++P VI + + R + D + + L A+ + F Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYF 416 Query: 422 SNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGMS 481 ++ P L +E LI AL G +AA+ L + R TL +K+R+ G+S Sbjct: 417 ASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476 Query: 482 RQGGEEQA 489 A Sbjct: 477 VYRSSRSA 484
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 481 bits (1239), Expect = e-170 Identities = 175/472 (37%), Positives = 255/472 (54%), Gaps = 36/472 (7%) Query: 2 AIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLDDAFSLVVSDVNMPGMDG 61 +L+ +DD +R L L G+ + +A + LVV+DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 HQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAVDYLVKPFEP--------KALLSL 113 LL ++++ +P LPVL+M+A A++A +GA DYL KPF+ +AL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 114 VERHAAGRVTGEEGP--VACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQ 171 R + ++G V A +++ + AR+ ++D T++I+GESGTGKE++AR +H Sbjct: 123 KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD 182 Query: 172 QSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISE 231 R PFVAIN AAIP +++E+ LFGHEKGAFTGA G+FEQAEGGTL LDEI + Sbjct: 183 YGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGD 242 Query: 232 MPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSV 291 MPM Q +LLRVLQ+ E VGGR PI D+R++A TN+DL + G FREDLYYRL+V Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNV 302 Query: 292 FPLAWRPLRERPGDILQLAERLLARHVAKMKHTPVRLSPAARACLQAYAWPGNVRELDNA 351 PL PLR+R DI L + + K R A ++A+ WPGNVREL+N Sbjct: 303 VPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENL 361 Query: 352 LQRALILQQGGVIEAADFCL-----------------AGAIPLSAGTEPSL--------D 386 ++R L VI +G++ +S E ++ D Sbjct: 362 VRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGD 421 Query: 387 VVADAGGLGDDMRRHEYQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQM 438 + +G + EY +I+ L A RG + +AA+ LG++ TLR K+ ++ Sbjct: 422 ALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 78.5 bits (193), Expect = 1e-22 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 17 MQADAMSLPKVTAAPELAPGQSTFADMLGQAIGKVHETQQASTQLANAFEIGKSGVDLTD 76 +QA AMS + P+ +FA L A+ ++ +TQ A+ A F +G+ GV L D Sbjct: 13 LQATAMSARAQESLPQ---PTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALND 69 Query: 77 VMIASQKASVSMQAMTQVRNKLVQAYQDIMQMPV 110 VM QKASVSMQ QVRNKLV AYQ++M M V Sbjct: 70 VMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 531 bits (1368), Expect = 0.0 Identities = 206/572 (36%), Positives = 307/572 (53%), Gaps = 35/572 (6%) Query: 28 LENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAAA 87 LE ++++ +I L+V +A+VAI A+VLW++ PDYR L+ +LS D ++ L Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 88 DIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATR 147 +IPY SGA+ V AD + RL+LA G+ P G VGFELLD+E+ G SQF E Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGL-PKGGAVGFELLDQEK-FGISQFSEQVN 130 Query: 148 YRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQV 207 Y+R+LEGELART+ +L VK+ARVHLA+PK S+FVR+++ PSASV V L PGRAL+ GQ+ Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 208 MAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVH 267 A+V+LV+++V L VT+VDQ G+LL++ S Q ++ VES + +R+ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQS-NTSGRDLNDAQLKFANDVESRIQRRIE 249 Query: 268 NILLPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPA----LRSEQSVDEQRASSQGPQ 323 IL P++GN A+V+A LDF+ E T E ++P+ A LRS Q ++ + P Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 324 GVPGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSD 383 GVPGALSNQP AP T P N Q +T + P Sbjct: 310 GVPGALSNQPAPPNEAPIAT-------------PPTNQQNAQNTPQTSTSTNSNSAGPRS 356 Query: 384 KRQQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARF 443 ++ T N+E+DR+I HT+ G + RLSVAVVV+ + D P A+ + + Sbjct: 357 TQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTL-----ADGKPLPLTADQMKQI 411 Query: 444 TRLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQVLGVVFILVL 503 L ++A+GF RGD++ V+N PF+A ++ F+QQ F D + + +LV+ Sbjct: 412 EDLTREAMGFSDKRGDTLNVVNSPFSA-VDNTGGELPFWQQQSFIDQLLAAGRWLLVLVV 470 Query: 504 VF----GVLRPVLNNITGGGKQAAPDSDMELGGMMGLDGELANDRVSLGGPTSILLPSPS 559 + +RP L K A + + ++ L+ D + L Sbjct: 471 AWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQRL---- 526 Query: 560 EGYEAQLNAIKGLVAEDPGRVAQVVKDWINAD 591 G E I+ + DP VA V++ W++ D Sbjct: 527 -GAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>PF06580#Sensor histidine kinase Length = 349 Score = 43.7 bits (103), Expect = 2e-06 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 22/122 (18%) Query: 455 ETDLDKNLVEALADPLV--HLVRNAVDHGIEMPEERETSGKARTGRVVLSAEQEGDHILL 512 E ++ +++ P++ LV N + HGI + G+++L ++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 513 SISDDGKGMDPNILRAKAVEKGLMDKDAAERLSESDCYNLIFAPGFSTKTEISDVSGRGV 572 + + G N + GL + ERL +++ G + ++S+ G+ Sbjct: 295 EVENTGSLALKNTKESTGT--GLQNVR--ERL------QMLY--GTEAQIKLSEKQGKVN 342 Query: 573 GM 574 M Sbjct: 343 AM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 4e-11 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 2 AVKVLVVDDSGFFRRRVSEILSADPTIQVVGTATNGKEAIDQALALKPDVITMDYEMPMM 61 +LV DD R +++ LS V +N A D++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALS-RAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 62 DGITAVRHIMQRCP-TPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNPDKVKQ 120 + + I + P PVL+ S+ + A + GA DYLPK F D++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPF-DLTELIGIIGR 117 Query: 121 LL 122 L Sbjct: 118 AL 119
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 70.7 bits (173), Expect = 5e-16 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 134 LNSSLLFGSGDAMPSDKAFAIIEKVANILK---PFANPVHVEGFTDNLPIRTAQYPTNWE 190 L S +LF A + A ++++ + L P V V G+TD I + Y N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272 Query: 191 LSSARAASIVRLLAMEGVNPARMASVGYGEYQPVASNDTAEGRAR---------NRRVVL 241 LS RA S+V L +G+ ++++ G GE PV N + R +RRV + Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332 Query: 242 VI 243 + Sbjct: 333 EV 334
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 4e-04 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 10/123 (8%) Query: 2 TQTRQTSTRPQMALQSYLDGLLQEATEAEDLSEQPAVADEFA-EAVREEQARDARQPARP 60 TQT +T + + + E E E P V + + + + E + +PAR Sbjct: 1095 TQTTETKETATVEKEE------KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 61 -EPAEAAAASFAP--RPFAEPRLAVLPSVMPVEAPVVTVVEQEVVAEASIPVLVEEQTVE 117 +P + + A S + + + P T + Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Query: 118 PAV 120 P V Sbjct: 1209 PTV 1211 Score = 34.3 bits (78), Expect = 6e-04 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 8/107 (7%) Query: 3 QTRQTSTRPQMALQSYLDGLLQEATEAEDLSEQPAVADEFAEAVREEQARDARQPARPEP 62 +T +T P++ Q QE +E +PA ++ ++E Q++ +P Sbjct: 1115 ETEKTQEVPKVTSQVSPK---QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 63 AEAAAASFAPRPFAEPRLAVLPSVMPVEAPVVTV---VEQEVVAEAS 106 A+ ++ V VE P T + V +E+S Sbjct: 1172 AKETSS--NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216
>PF06580#Sensor histidine kinase Length = 349 Score = 26.8 bits (59), Expect = 0.033 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%) Query: 5 VAVIFLALAWALSLWFFLNYSKR---------QRELAAQQAEGDALRDQ 44 V+ + W+L L+F ++ K + AQ+A+ AL+ Q Sbjct: 122 FNVVVVTFMWSL-LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQ 169
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 64.4 bits (157), Expect = 1e-15 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 9 AIALNYDG--HQAPTLTAKGDEDLAEAILALAREHEVPIYENADLVR-LLARLELGDQIP 65 AI + Y P +T K + + + +A E VPI + L R L + IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 66 EALYLTIAEIIAFAWQL 82 AE++ + + Sbjct: 328 AEQIEATAEVLRWLERQ 344
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.027 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 32 MLQISGPNGSGKTSLLRLLAGLMQPTAGQILLG-GKPLAEQ 71 + + G G GK++L+ L GL + +G GK EQ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQ 638
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 73.5 bits (180), Expect = 2e-18 Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 22/207 (10%) Query: 5 RERNKELILRAASEEFADKGFAATKTSDIAAKAGLPKPNVYYYFKSKDNLYREVLESIIA 64 + ++ IL A F+ +G ++T +IA AG+ + +Y++FK K +L+ E+ E + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 65 PIMQAS------TPFNADGDPKEVLSAYIRSKIRISRDLPHASKVFASEIMHGAPHLSPN 118 I + P + +E+L + S + R +F G + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV-VQ 127 Query: 119 QVEQLNEQARHNIEC--IQRWIDRGQI-AHVDAHHLMFSIWAATQTYADFDWQISAVTGK 175 Q ++ ++ ++ I+ + A + + IS + Sbjct: 128 QAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY----------ISGLMEN 177 Query: 176 AKLADSDYDAA--AETIIRMVLKGCEP 200 A +D A + ++L+ Sbjct: 178 WLFAPQSFDLKKEARDYVAILLEMYLL 204
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 33.9 bits (77), Expect = 5e-04 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%) Query: 6 SLILAGGLLACGTTFGGD---------LLQWQNNSLTYLWGKNFKVNPAIQQTVTFEHAD 56 +L+ AG ++A TTF L W + S+ + + + P I+ E+ Sbjct: 4 TLLAAGAVVALSTTFAAGAAENDKPQYLSDWWHQSVNVVGSYHTRFGPQIRNDTYLEYEA 63 Query: 57 GWK--YGDNFIFVD-KIFYQGQKDAG---NGPNTYYGEISPRLSFGKIFDQKIEFGPVKD 110 K + D + ++D +F+ G A N + + EI PR S K+ + + FGP K+ Sbjct: 64 FAKKDWFDFYGYIDAPVFFGGNSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGPFKE 123 Query: 111 VLLAMTYEFGEGDTES 126 A Y + G +S Sbjct: 124 WYFANNYIYDMGRNDS 139
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 35.0 bits (80), Expect = 2e-04 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 14/144 (9%) Query: 19 PSHAGEWLQWHGESLTYLYGKDFKVNPDIQQTITFEHAN--KWKYGDTFMFVDKIFYNGK 76 P + +W WH +S+ + + P I+ E+ K + D + ++D + G Sbjct: 28 PQYLSDW--WH-QSVNVVGSYHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYIDAPVFFGG 84 Query: 77 ADPGKGV----TTYYGEFSPRLSLGKIFDRKLAFGPIKDVLLAMTYERGEGDNEA----- 127 KG+ + + E PR S+ K+ + L+FGP K+ A Y G N++ Sbjct: 85 NSTAKGIWNKGSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNDSQEQST 144 Query: 128 YLIGPGFDLNIPGFNYFTLNFYVR 151 + +G G D++ +LN Y + Sbjct: 145 WYMGLGTDIDTGLPMSLSLNVYAK 168
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.002 Identities = 20/96 (20%), Positives = 33/96 (34%) Query: 296 PKPMAVSPEQAAAKIEYQPLPATAVGGKTAAEQRAEDAAKAAEAPAAPAQAPAQAAAQAG 355 K + +A AK + L A +A D+ P A A QAG Sbjct: 429 EKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAG 488 Query: 356 GGDFDKIHNVIQERCTVCHSSKPTSPLFSAAPAGVM 391 + + + + + + +P F+AA VM Sbjct: 489 TKPNQNKAPMKETKRQLPSTGETANPFFTAAALTVM 524
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.5 bits (157), Expect = 2e-15 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 2 HLLVVEDDDIVRMLTVEVLDELGYKVIEAEDATAALRVLEDPSQALALMMTDVGLPDMRG 61 +LV +DD +R + + L GY V +A R + + L++TDV +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA--AGDGDLVVTDVVMPDENA 62 Query: 62 EVLAGKARELRPLLPVLFASGYADSLTVPEGMHL-----IGKPFSIDQLRDTVVGILGNP 116 L + ++ RP LPVL S +T + + KPF + +L + L P Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 1e-17 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1032 KVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGF 1091 +L+ DDD L AL G V I N + D DLV+ DV+MP+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAF 63 Query: 1092 EATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLPQ 1151 + I++ LP++ ++A+ + + GA DYL KP DL L +I L + Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1152 LER 1154 +R Sbjct: 122 PKR 124 Score = 71.4 bits (175), Expect = 8e-15 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 16/169 (9%) Query: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 824 ILV +D+ +L GY + A + A D ++ D+ +PD + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 825 LQRLKEQASTRHIPVHIISVEDRVE---AAMHMGAVGYAVKPTSREELKEVFARLEAKLT 881 L R+K+ +PV ++S ++ A GA Y KP EL + R A+ Sbjct: 66 LPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 882 QKLKHILLVEDDDLQRESIARLIGD-----DDVEITAVAMAQDALALLR 925 ++ + + L+G + + A M D ++ Sbjct: 124 RRPSKLE------DDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166 Score = 63.7 bits (155), Expect = 2e-12 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 886 HILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGNE 945 IL+ +DD R + + + ++ + A + D ++ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 946 LLKRMTAEDIRAFPPVIVYTG 966 LL R+ PV+V + Sbjct: 65 LLPRIKKARPDL--PVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 1e-15 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 21/195 (10%) Query: 7 AKLLIVDDLPENLLALDALIQGEDREVHQAQSAEAALSLLLEHEFALAILDVQMPGMNGF 66 A +L+ DD L+ + +V +A + + L + DV MP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 ELAELMRGTDKTKHIPIVFVSAAGREMNYAFKGYESGAVDFLHKPLDTLAVKSKVSVFVD 126 +L ++ +P++ +SA M A K E GA D+L KP D Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMT-AIKASEKGAYDYLPKPFD------------- 107 Query: 127 LFRQRKVLGRQLEALEQSRQEQELLLSQLQVARCELEHAVRMRDDFMSIVSHEVRTPLNG 186 +++G AL + ++ L Q + + M++ + + ++T L Sbjct: 108 ---LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR-LMQTDLTL 163 Query: 187 LIL-ETQLRKMHLAR 200 +I E+ K +AR Sbjct: 164 MITGESGTGKELVAR 178
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 3e-17 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 12/121 (9%) Query: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFAILASKPHLDLMVTDFRLPGGISGV 68 +LV +D+ AIR +L L+ GY V + + + +A+ DL+VTD +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 69 DIAEPAVKLRPDLKVIFISGYP-----AEILESGSPITRKAPILAKPFDLDTLHEQIQSL 123 D+ K RPDL V+ +S + E G+ L KPFDL L I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGA-----YDYLPKPFDLTELIGIIGRA 118 Query: 124 L 124 L Sbjct: 119 L 119
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.017 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 37 VVSILGPSGVGKSSLLRVLAGLQ 59 V + G G+GKS+L+ L GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.0 bits (65), Expect = 0.016 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 18/79 (22%) Query: 25 GVALFGQA------DGLSARFSPAATLAS---LVELLGQGE--VYGHIWVSLKRILIGLL 73 G+ L+G + D + P TL+S V+ L GE YG + + IG+ Sbjct: 209 GIILYGASPSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGI- 267 Query: 74 LALLMGVPLGLLVGSYRHL 92 V G G RH Sbjct: 268 ------VAAGYADGYPRHA 280
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.4 bits (63), Expect = 0.018 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%) Query: 103 LAVCASHRRQGIARALLGD----LRSRHAC 128 +AV +R++G+ ALL + H C Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFC 124
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.9 bits (64), Expect = 0.015 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 109 LDAQVTELTGQLKTIDDSWKNRVQGMQETLDSRKQLIDELEARNKALNEQLDQSQSDLRD 168 L+A+ +L Q + ++ + Q ++ LD+ ++ +LEA ++ L EQ S++ + Sbjct: 293 LEAEKADLEHQSQVLNAN----RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQS 348 Query: 169 TQARL 173 + L Sbjct: 349 LRRDL 353 Score = 28.9 bits (64), Expect = 0.019 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 92 LSNDLQAVPGQNERLPLLDAQVTELTGQLKTIDDSWKNRVQGMQETLDSRKQLIDELEAR 151 L DL A E ++ + E +L ++ K + + T + +L +LEA Sbjct: 384 LRRDLDA---SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAE 440 Query: 152 NKALNEQL 159 KAL E+L Sbjct: 441 AKALKEKL 448
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.0 bits (83), Expect = 2e-04 Identities = 51/218 (23%), Positives = 82/218 (37%), Gaps = 40/218 (18%) Query: 60 EVLGQDEALQAIEDVLTVV-RADILDPRRPLFTALFLGPTGVGKTEVVRALARALHGDAD 118 ++G+ A+Q I VL + + D+ T + G +G GK V RAL Sbjct: 138 PLVGRSAAMQEIYRVLARLMQTDL--------TLMITGESGTGKELVARALHDYGKRRNG 189 Query: 119 AFCRVDMNTLAQEHYAAALTGAPPG-YAGAKEGRT-LFDQALLDGSQGRPGIVLFDELEK 176 F ++M + ++ + L G G + GA+ T F+QA +G G + DE+ Sbjct: 190 PFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQA--EG-----GTLFLDEIGD 242 Query: 177 ASKEVSQALLNVFDNGLLRLASGEKSFNFRNTLVFMTSN------LAADEIRQ---HRLG 227 + LL V G G + + +N + R+ +RL Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRS-DVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 228 P----LAPLRRLLGLQAGRRERLLGLVRRRLVKRFSAE 261 L PLR R E + LV R V++ E Sbjct: 302 VVPLRLPPLRD-------RAEDIPDLV-RHFVQQAEKE 331
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 31.7 bits (72), Expect = 0.001 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 10/79 (12%) Query: 123 RSNSEAQARLMQKNAQLQER------LEHQADINKAKVLLMAAQGWQEPEAHAYL---SK 173 R S++QAR+ Q+ + LE + ++++ LL + + AYL S+ Sbjct: 71 RKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSE 130 Query: 174 EAMKQRLSMLEMARKTLKQ 192 E +Q ML R LK Sbjct: 131 EPSEQFK-MLCGLRDALKG 148
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 3e-05 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 31/123 (25%) Query: 34 GIETFTQVSAPQAFAERMQGDNLML--------ACFV---EGAIAGLIELKEG------- 75 G+ T+T+ + + ++ + D++ + A F+ E G I+++ Sbjct: 33 GVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALI 92 Query: 76 RHIAMLFIAPGLQRQGIGKRLMNAA--------LAHASAEVVTVKASLSSVPAYQRYGFT 127 IA +A +++G+G L++ A E + ++S+ Y ++ F Sbjct: 93 EDIA---VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDI--NISACHFYAKHHFI 147 Query: 128 LAG 130 + Sbjct: 148 IGA 150
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 0.003 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 21/213 (9%) Query: 275 AAASALNAVTEESANNLRQQGQELEQAATAVTEMTTAVEEVARNAITTSQTTSE---SNQ 331 A + N N + Q G E ++ T T+ T VE+ + + T +T ++Q Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 332 LAAQSRRQVSENIDGTEAMTREIQTSSAHLQQLVGQVRDIGKVLEVIRS-----VSEQTN 386 ++ + + + A + + Q D + + S V+E T Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 387 LLALNAAIE-------AARAGEAGRGFAVVADEVRTLAYRTQQSTQEIEQMIGSVQAGTE 439 + N+ +E A + + R+ E S T Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVE-PATTSSNDRSTV 1247 Query: 440 AAVASMQASTNRAQS-----TLDVTLASGQVLE 467 A +TN S V L G+ + Sbjct: 1248 ALCDLTSTNTNAVLSDARAKAQFVALNVGKAVS 1280
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.0 bits (122), Expect = 4e-09 Identities = 76/399 (19%), Positives = 148/399 (37%), Gaps = 55/399 (13%) Query: 16 LLILLCLLGVF-PLDVIL--PSFPALSDEFRVDTKQIAYSVSFFAVGVAMAQIVIGPLSD 72 +LI LC+L F L+ ++ S P ++++F + + F + ++ V G LSD Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 73 GIGRKRLLLAGLSVSIVGAL-GCVFSTQYETFMAFRLVQALGCGSLV-LGQALVQDLYSG 130 +G KRLLL G+ ++ G++ G V + + + R +Q G + L +V Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 131 TQRNAMRILLTSASGLFISLSPLAGAFLQQSFGWKASFTVFVIIAAIVSLLSCVLLHDAP 190 R L+ S + + P G + W S+ + + + I+++ + L Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLLKKE 192 Query: 191 ASHDRA--------PSMSSYRVMLRDTDYL-AHAMLSSLAF------------------- 222 S+ ML T Y + ++S L+F Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGL 252 Query: 223 ----------ACHF-------SFIVIAPLLLMGRLELTAYQFSLVFIGYG-LAYIVGGMA 264 C F+ + P ++ +L+ + V I G ++ I+ G Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYI 312 Query: 265 ATYLNSRVSPQAQIKAGLLLISTAGITLLMWEWVAGLSVLGVLLPMIVCTTGTTLLRPAA 324 L R P + G+ +S + +T + +++ ++ + T + Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTI 372 Query: 325 TTQALARYPRQAGAAASLNTTLLFAGAGLTSSVVAGLES 363 + +L ++AGA SL F G ++V GL S Sbjct: 373 VSSSLK--QQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.6 bits (108), Expect = 3e-07 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 8/78 (10%) Query: 83 ALGTVT-ATNTVNVRSRVAGELVNIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQ 141 A G +T + + ++ + I KEG+ V+ GD+L ++ AE + Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLK 138 Query: 142 NQAQLKNAQVDLARYKGL 159 Q+ L A+++ RY+ L Sbjct: 139 TQSSLLQARLEQTRYQIL 156 Score = 39.0 bits (91), Expect = 3e-05 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 132 LQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAQAQVAQFQGLVKTNQAQV 191 L+ + L Q ++++ +A+ + L+ + + K L + ++ Sbjct: 268 LRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK--LRQTTDNIGLLT-------LEL 318 Query: 192 NDARLNLDFTQIRAPISGRV-GLRQLDLGNLVAANDTTALVV 232 + IRAP+S +V L+ G +V +T ++V Sbjct: 319 AKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIV 360
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 833 bits (2153), Expect = 0.0 Identities = 285/1035 (27%), Positives = 510/1035 (49%), Gaps = 24/1035 (2%) Query: 3 LSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMTSA 62 ++ FI RP+ + + +++AG +A LPV+ P + P + V YPGA Q + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTAPLERQFGQMPGLEQMASTS-SGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLPS 121 VT +E+ + L M+STS S G+ +TL F + D+A+ QVQ + A+ LLP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 DLPAPPVYNKVNPADTPVLTLAISS--KTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAG 179 ++ + + + ++ S ++D V + V L++++GVG V + G Sbjct: 121 EVQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 GQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVS------MLDAND 233 Q +RI ++ D L L DV + N G G + + A Sbjct: 180 AQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QLRSPEEYANLILAYN-NGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGAN 292 + ++PEE+ + L N +G+ +RLKDVA + G EN + A N A L I+ GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 VIEVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVF 352 ++ IK L + P G+ V D T ++ ++ +V L AI+LV +V ++F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRRLSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISR 412 L+ + ATLIP+IAVP+ L+GTF ++ G+S+N LT+ + +A G +VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-EEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAI 471 + E+ P +A K QI L+ + L AV IP+ F G ++R+F+IT+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 LISLVVSLTLTPMMCARLLKREPKE--EEQGRFYRASGAWIDWLIKHYGSALQWVLKHQP 529 +S++V+L LTP +CA LLK E E +G F+ D + HY +++ +L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 LTLLVAVASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVIL 589 LL+ + V L++ +P F P +D GV + + P + + ++ L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 QDPA--VQSLSSYIGVDGDNATLNSGRLLINLKPHGERDVSASEVISRLQPQVDRLVGIR 647 ++ V+S+ + G N+G ++LKP ER+ + + + L IR Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 648 L-FMQPVQDLSIEDRVSRTQYQFSL---SSPDADLLAQWSGKLVQALQQRP-ELADVASD 702 F+ P +I + + T + F L + D L Q +L+ Q P L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 703 LQDKGLQVYLVIDRDMASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSKDAA 762 + Q L +D++ A LG+S+S I + A G ++ + ++ +Q+ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 763 TIGPQALESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASLGE 822 + P+ ++ ++V++ +G V SA + P++ + A G S G+ Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 823 AVQVIEQVQQDIGMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYESYIH 882 A+ ++E + +P G+ + G + + S + L+ + V +++ L LYES+ Sbjct: 839 AMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896 Query: 883 PITILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAERHQG 942 P++++ +P VG LLA + + ++G++ IG+ KNAI++++FA + +G Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956 Query: 943 MSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLVSQVL 1002 +A A +R RPILMT+LA + G +PL ++ G+G+ + +G+ ++GG++ + +L Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016 Query: 1003 TLFTTPVIYLYFDRL 1017 +F PV ++ R Sbjct: 1017 AIFFVPVFFVVIRRC 1031 Score = 91.1 bits (226), Expect = 1e-20 Identities = 87/515 (16%), Positives = 171/515 (33%), Gaps = 49/515 (9%) Query: 2 NLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMTS 61 N + L IV ++ + LP S LP+ D M P + Q T Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 62 AVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNM---------DVAEQQVQAAI 112 V + + + + + G S N M + E +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAASNLLPSDLPAPPVYNKVNPADTPVLTLAISSKTMP------------LPKLNDLVDT 160 + A +L + ++ L ++ L + + + Sbjct: 648 HRAK----MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 161 RVAQKLAQISGVGMVSIAGGQRQAVRIKVNVD--ALAANGLNLDDV----RTLIGASNVN 214 AQ A + V G + K+ VD A G++L D+ T +G + VN Sbjct: 704 MAAQHPASLVSV----RPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 215 QPKGNFDGPTRVSMLDANDQLR-SPEEYANLILAYNNGAPLRLKDVAEIVDGAENERLAA 273 G + + A+ + R PE+ L + NG + + RL Sbjct: 760 DF--IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRL-- 815 Query: 274 WANENHAVLLNIQR--QPGANVIEVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAV 331 N + IQ PG + + + ++ ++ LPAG+ T + R + Sbjct: 816 -ERYNGLPSMEIQGEAAPGTSSGDAMALME----NLASKLPAGIGYDW-TGMSYQERLSG 869 Query: 332 KDVQHELLIAIVLVVMVTFVFLRRLSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMA 391 + I+ V+V + S + + VPL ++G L + ++ Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929 Query: 392 LTIATGFVVDDAIVMLENI-SRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLL 450 L G +AI+++E +EG+ ++A L R ++ + + I ++PL Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 451 FMADVVGRLFREFAITLAVAILISLVVSLTLTPMM 485 I + ++ + ++++ P+ Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 807 bits (2086), Expect = 0.0 Identities = 297/1037 (28%), Positives = 521/1037 (50%), Gaps = 30/1037 (2%) Query: 3 LSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMAST 62 ++ FIRRP+ +L++ +M+ G ++ LPVA P + P + VSAN GA + + T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VATPLERKLGSIAGVTTLTSSS-NQGSTRVIIGFEMGRDIDGAAREVQAAINATRNLLPS 121 V +E+ + I + ++S+S + GS + + F+ G D D A +VQ + LLP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 GMRSMPTYKKINPSQAPIMVLSLTSD--VLQKGQLYDLADTILSQSLAQVSGVGEVQIGG 179 ++ + S + +MV SD + + D + + +L++++GVG+VQ+ G Sbjct: 121 EVQQQGISVE-KSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SSLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFV------EDTERNWQVRAND 233 + A+RI ++ LLN+Y L+ +V + N + G + + N + A Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QLESAKDYEPVVIR-QQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQSGAN 292 + ++ +++ V +R +G+++RL DVA V G EN N + A L + +GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLF 352 ++T IKA+L LQ P +++ D +P ++ ++ E TL A++LV LV+YLF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISR 412 L ++RA+LIP++AVPV L+GTFA++ G+S+N L++ ++LA GL+VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAI 471 + E+ PP +A ++ L+ + + L AVF+ + F GG ++++FSIT+ +A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 IVSLVVSLTLTPMLCARWLKP----HQAQQTRLQRWSDKLHQRMVAAYDRSLGWALRHKR 527 +S++V+L LTP LCA LKP H + W + V Y S+G L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 528 LTLLSLLATIGINIALYVVVPKTLIPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALL 587 LL + + L++ +P + +P++D G + I+ G + Q ++ L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 588 ADP-----AVQSVAGFIGGNSGTNNAMVLVRLKPISERKID---AQKVIERLRKELPKVP 639 + +V +V GF N M V LKP ER D A+ VI R + EL K+ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 640 GGRLFLMADQDLQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALP-ELTAID 698 G + + G L AL + +++ P L ++ Sbjct: 659 DGFVIPFNMPAIV--ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 699 ARDGAGTQQVTLVVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINP 758 T Q L VD+++A+ LG+ + + ++ A ++ D ++ ++ + Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 759 KYAWDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSP 818 K+ P ++++ V +A+G VP S + R+ S +I + A G S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 819 DQAMAALERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESY 878 AMA +E +K LP + G + + P ++ + ++V+L L LYES+ Sbjct: 837 GDAMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 879 IHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERH 938 P++++ +P VG LLA + + + ++GL IG+ KNAIL+++ A L Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 939 QGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQ 998 +G E+ A +RLRPILMT+LA ILG LPL +S G+ + +G+ ++GG+V + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 999 ILTLYTTPVVYLYLDRL 1015 +L ++ PV ++ + R Sbjct: 1015 LLAIFFVPVFFVVIRRC 1031 Score = 99.5 bits (248), Expect = 3e-23 Identities = 83/511 (16%), Positives = 177/511 (34%), Gaps = 41/511 (8%) Query: 2 NLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANL-SGASPEVMA 60 N G + +L+ I+ V F LP + LP+ D V + L +GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 STVATPLERKL-------GSIAGVTTLTSSSN-QGSTRVIIGFEMGRDIDGAAREVQAAI 112 + + L S+ V + S Q + + + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NATRNLLPSGMRSMPTYKKINPSQAPIMVLSLTS-------DVLQKG--QLYDLADTILS 163 + + L + I + I+ L + D G L + +L Sbjct: 648 HRAKMELG----KIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLG 703 Query: 164 QSLAQVSGVGEVQIGGSS-LPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVED 222 + + + V+ G ++ V+ + +SL ++ +S A + D Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 223 TERNWQVRA---NDQLESAKDYEPVVIRQQNGTILRLSDVATVTDG----VENRYNSGFF 275 R ++ +D + + +R NG ++ S T RYN Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYN---- 819 Query: 276 NDQAAVLLVVNRQSGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAE 335 L + Q A + A + L S LPA + + S + + +A Sbjct: 820 -----GLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAP 873 Query: 336 HTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILA 395 + I+ V+V L + S + L VP+ +VG + + ++ L+ Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 396 TGLVVDDAIVVLENI-SRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGG 454 GL +AI+++E + G+ ++A + + +L +++ + + + G Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 455 IVRNLFQEFSITLAAAIIVSLVVSLTLTPML 485 I + ++ + ++++ P+ Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 78.0 bits (192), Expect = 1e-16 Identities = 66/428 (15%), Positives = 153/428 (35%), Gaps = 24/428 (5%) Query: 607 NAMVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLGGGGRDQTSSQYL 666 + + + + ++ I +V +L+ P +P Q++Q G +++SS YL Sbjct: 87 SVTITLTFQSGTDPDIAQVQVQNKLQLATPLLP---------QEVQQQGISVEKSSSSYL 137 Query: 667 -YTLQSGDLAALREWFPKVVAALRALPELTAI----DARDGAGTQQVTLVVDRDQAKRLG 721 D + A L+ + D + + + +D D + Sbjct: 138 MVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYK 197 Query: 722 IDMDMVTAVLNNAYSQ----RQISTIYDSLNQYQVVLEINPKYAWDPSTLEQVQV-ITAD 776 + V L Q + T Q + ++ +P +V + + +D Sbjct: 198 LTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK-NPEEFGKVTLRVNSD 256 Query: 777 GARVPLSTIAHYENSLANDR--VSHEGQFASEDIAFDVAEGYSPDQAMAALER-AVAKLG 833 G+ V L +A E N G+ A+ + D A A + A + Sbjct: 257 GSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPF 316 Query: 834 LPEEV-IAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAG 892 P+ + + T + + A++LV+LV+ + ++ L +P Sbjct: 317 FPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVL 376 Query: 893 VGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACL 952 +G L G + +++ G+ L IG++ +AI++++ ++ P+E+ ++ Sbjct: 377 LGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMS 436 Query: 953 LRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVYLYL 1012 ++ + +P+ + + +TI+ + S ++ L TP + L Sbjct: 437 QIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496 Query: 1013 DRLRHRFN 1020 + + Sbjct: 497 LKPVSAEH 504
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Query: 291 ISEQATHAAEVIRRLRAFLRKGPRRLQALDVAELAGEAMRLCAW---EAAR--DQVQVEL 345 I E T A E++ L +R R A V+ LA E + ++ + + D++Q E Sbjct: 186 ILEDPTKAREMLTSLSELMRYSLRYSNARQVS-LADELTVVDSYLQLASIQFEDRLQFEN 244 Query: 346 RMSAQLPLVYADRVLLEQVLLNLLRNAIDANREQQGERPSRILLCAARDGDGVLVEVADQ 405 +++ + V +L++ ++ N +++ I A Q G +ILL +D V +EV + Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGI-AQLPQGG----KILLKGTKDNGTVTLEVENT 299 Query: 406 GPGVAPE 412 G Sbjct: 300 GSLALKN 306
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (253), Expect = 3e-27 Identities = 27/150 (18%), Positives = 56/150 (37%) Query: 1 MLQAKVYVVDDDQGMRDSTVWLLQSVGLQALPFASGQAFLDACVDDGPACVLLDVRMPGL 60 M A + V DDD +R L G ++ V+ DV MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 GGLAVQQAMRERGLMVPVIFVSGHADVPIVVRAFKAGACDFIEKPYNDQLLLDSVQAALE 120 + +++ +PV+ +S ++A + GA D++ KP++ L+ + AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 HAGLARQGDQALALVQARIDGLTPRERDVF 150 + + + G + ++++ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIY 150
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 87.2 bits (216), Expect = 9e-21 Identities = 54/412 (13%), Positives = 117/412 (28%), Gaps = 90/412 (21%) Query: 15 EPSRKRKAWLLGLLLLLILAGVGTWAWYSIVGRWHESTDDAYVNGNVVEITPLVAGTVIS 74 E R+ L+ ++ L + V + +G EI P+ V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 75 IGADDGDLVHAGQVLLQFDPADSEVALQSAEAKLARSVRQVRGLYSNVDSL--------- 125 I +G+ V G VLL+ +E ++ L ++ + S+ Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 126 ----------------------KAQLETRQAELRKAQQDFNRR----------------- 146 K Q T Q + + + + +++ Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 147 -----------KVLADSGAIAA-------EELSHARDDLSVAQAAVNSARQQLSTS---- 184 L AIA + A ++L V ++ + ++ ++ Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 185 ---SALVDDTVVSSHPDVMAAAADLRQ----AYLDHARTTLVAPVTGYVAKRTVQ-LGQR 236 + L + ++ L + + APV+ V + V G Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 237 LQPGTATMAVIPLDQV-WIDANFKETQLREMRIGQPVEITADVYGSEV--KYSGTVDSLG 293 + M ++P D + A + + + +GQ I + + G V ++ Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Query: 294 AGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEV 345 G ++ + + K+ PL G++ E+ Sbjct: 410 LDA-------IEDQRLGLVFNVIISIEE--NCLSTGNKNIPLSSGMAVTAEI 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 119 bits (300), Expect = 3e-31 Identities = 82/403 (20%), Positives = 162/403 (40%), Gaps = 28/403 (6%) Query: 19 IGLSLATFMQVLDTTIANVALPTISGNLGVSYEQGTWVITSFAVSNAIALPLTGWLSRRF 78 I L + +F VL+ + NV+LP I+ + WV T+F ++ +I + G LS + Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 79 GEVKLFIWATLLFVLASFLCGIAQSMPELVGF-RVLQGVVAGPLYPMTQTLLIAVY-PPA 136 G +L ++ ++ S + + S L+ R +QG +P +++A Y P Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKE 135 Query: 137 KRGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFF---INVPIGLFAAAVVRQQMRT 193 RG A L+ + + GP +GG I W ++ I + F ++++++R Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRI 195 Query: 194 RPVVTSRQPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFIIVGSLVSLVFLAVFVIW 253 + D G++ + +G+ + F +S+ I +VS++ +FV Sbjct: 196 ------KGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKH 239 Query: 254 ELTDRHPVVNLRLFVHRNFRIGTIVLVGGYAGFFGINLILPQWLQTQMGYTATWAGLAVA 313 P V+ L + F IG + + G ++P ++ + G + Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 314 PIGLLPVIMS-PFVGKYAHRFDLRVLA--GLAFLAIGTSCYMRAGFTSEVDFQHVALVQL 370 G + VI+ G R + G+ FL++ ++ A F E + ++ + Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS---FLTASFLLETTSWFMTIIIV 356 Query: 371 FMGIGVALFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSF 413 F+ G++ +I+ S L + G L F L Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.4 bits (229), Expect = 1e-24 Identities = 77/257 (29%), Positives = 116/257 (45%), Gaps = 23/257 (8%) Query: 4 VIVITGGSRGIGAATALLAARQGYRICINYLADDQAAEAILSQVRALGAEAI---AVRAD 60 + ITG ++GIG A A A QG I A D E + V +L AEA A AD Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHI----AAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 VSVEDEIIQLFLRVDDELGPITALVNNAGTIGQQSRVEDMSEFRLLNVMKTNVVGPMLCA 120 V I ++ R++ E+GPI LVN AG + + + +S+ N G + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 121 KHALLRMARRHGGQGGAIVNVSSVAARLGSPNEYVD-YAASKGALDTFTIGLAKEVAGEG 179 + M R + G+IV V S A G P + YA+SK A FT L E+A Sbjct: 125 RSVSKYMMDR---RSGSIVTVGSNPA--GVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 180 VRVNGVRPGYIHTGFH-----ALSGDPDRV----SKLEPGLPMGRGGHPEEVAEAILWLL 230 +R N V PG T +G + + G+P+ + P ++A+A+L+L+ Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 231 SDKASYATGSFIDLGGG 247 S +A + T + + GG Sbjct: 240 SGQAGHITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.9 bits (192), Expect = 4e-17 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 567 TAKRILLVEDQTALRLVIGEVLEELGYRVDAFENGPSALTHLQSGERPDLLLSDVGLPGG 626 T IL+ +D A+R V+ + L GY V N + + +G+ DL+++DV +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 627 LNGRQVAERCRERYPDLKVLLITGYDESAALSDGQPLQGTLVLTKPFELEALAERVRELL 686 N + R ++ PDL VL+++ + L KPF+L L + L Sbjct: 61 -NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 687 EP 688 Sbjct: 120 AE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 1e-15 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 430 KVMLVEDEPALRLVILEVLLDQGHEVQAFEDGRQAYKALQEAPAPDLLITDVGLPGGIDG 489 +++ +D+ A+R V+ + L G++V+ + ++ + DL++TDV +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE-NA 62 Query: 490 YQLADACRASAPHAAVLLITGYDLAHSTANARPNRRTELLAKPFDLQALAQALERLLGST 549 + L + + P VL+++ + + A + L KPFDL L + R L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1137 bits (2942), Expect = 0.0 Identities = 540/1031 (52%), Positives = 736/1031 (71%), Gaps = 7/1031 (0%) Query: 1 MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDES 60 M FFI RP+FAWV+A+ +++AGALAI QLPVAQYP +APP V + A YPGA A T+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVSLIEQELNGADNLLYFESQS-SLGSATITATFAPGTHPDLAQVDVQNRLKVVESRLPR 119 V +IEQ +NG DNL+Y S S S GS TIT TF GT PD+AQV VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGS 179 V QQG+ VEK S+ +L++A S++ + +SD +A NV D + RL GVG QL+G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQEITANVVVKGQL 239 + AMRIW+D L + LTP DV + QN Q+A G +G P+ Q++ A+++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 SSPEAFAAIVLRANPDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAM 299 +PE F + LR N DGS V + DVARVE+G + Y R+NGKPA ++L+ GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQ 359 +TA ++AK+ +L +FP+G+K PYDT+PFV++SI +V+ TLFEA++LVF VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERIM 419 N+R TLIPT+ VPV L+GTFA++ A G+S+N LT+FGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 AEEGLPPKDATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILF 479 E+ LPPK+AT K+M QI GA+VGI +VL AVF+PMAF GS G IY+QFS+++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFNRRFERMSNGYQRWVVQALKRSGRY 539 S +AL LTPALCATLLKPV+ H + GFFGWFN F+ N Y V + L +GRY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 LLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIE--AHNA 597 LL+YA+++A + F +LP++FLP EDQG +T IQLP GA++ RT++V Q+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 EEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSER-GADDSAQSIADRATMAFTQLKDA 656 E+ V + + GFSFSG QNA +AF +LK W ER G ++SA+++ RA M +++D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 IAYSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDQLLESASKSKV-LTNVREASL 715 P I LG +TGF+F L D+ G+GH L AR+QLL A++ L +VR L Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 AESPQVQLEIDRRQANALGVSFADIGTVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRS 775 ++ Q +LE+D+ +A ALGVS +DI + A+G +YVNDF ++GR++++ VQA+ R Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 QVEDLLNIHVRNDSGKMVPLGAFVQARWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAM 835 ED+ ++VR+ +G+MVP AF + WV G +L RYNG P++ I GE A G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AEVERLVAQLPAGTGLEWTGLSLQERLSGSQAPLLMALSLLVVFLCLAALYESWSIPTAV 895 A +E L ++LPAG G +WTG+S QERLSG+QAP L+A+S +VVFLCLAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 LLVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVD-QGVDAV 954 +LVVPLG++G +LA TL NDV+F VGL+T IGLSAKNAILI+EFAK L++ +G V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAAVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGMLSAT-LAVVF 1013 +A + A R+RLRPI+MTSLAFILGV+PLAI++GA S +Q A+G GV+GGM+SAT LA+ F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1014 VPVFFVVVMRL 1024 VPVFFVV+ R Sbjct: 1021 VPVFFVVIRRC 1031 Score = 76.8 bits (189), Expect = 3e-16 Identities = 55/325 (16%), Positives = 126/325 (38%), Gaps = 18/325 (5%) Query: 720 QVQLEIDRRQANALGVSFADIGTVLDVA---VGSSYVNDFPN-QGRMQRVVVQAEGDQRS 775 +++ +D N ++ D+ L V + + + P G+ + A+ ++ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 776 QVEDLLNIHVR-NDSGKMVPLGAFVQARW-VSGPVQLTRYNGYPAVSISGEPAAGYSSGE 833 E+ + +R N G +V L + + R NG PA + + A G ++ + Sbjct: 243 -PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 834 A----MAEVERLVAQLPAGTGLEW---TGLSLQERLSGSQAPLLMALSLLVVFLCLAALY 886 A++ L P G + + T +Q + L A+ L VFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML--VFLVMYLFL 359 Query: 887 ESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIE-FAKH 945 ++ + VP+ +LG + G + G++ IGL +AI+++E + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 946 LVDQGVDAVDAAVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGML 1005 +++ + +A ++ +V ++ +P+A G++ A + ++ M Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 1006 -SATLAVVFVPVFFVVVMRLSRRRQ 1029 S +A++ P +++ Sbjct: 480 LSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 1e-06 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 31/214 (14%) Query: 64 RTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATL--AKAETTRYQ 121 R+ E++ +V + + +EG V++GDVL + +AD +++L A+ E TRYQ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 122 A-------------RLQEQRYRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERAR 168 +L ++ Y + V ++ V R K F + + L++ R Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT-SLIKEQFSTWQNQKYQKELNLDKKR 213 Query: 169 LNLGYATVTAPISGRIGRAQVTEGAL-----------VGQNETTPLATIQQLDPIHADVT 217 TV A I+ ++V + L + ++ L + ++ Sbjct: 214 AER--LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV--LEQENKYVEAVNELR 269 Query: 218 QSTRELNALRRALRAGELQQVGDGQARATLIQDD 251 +L + + + + + Q I D Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Score = 37.9 bits (88), Expect = 6e-05 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 113 AKAETTRYQARLQ--EQRYRELVDDKAVSRQEYDNAKASFL-QADAEVAEARAALERARL 169 A E Y+++L+ E ++ + Q + N L Q + L + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 170 NLGYATVTAPISGRIGRAQV-TEGALVGQNET 200 + + AP+S ++ + +V TEG +V ET Sbjct: 324 RQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 4e-21 Identities = 30/136 (22%), Positives = 62/136 (45%) Query: 2 PNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGL 61 I + +DD+A+ ++ L R + V++ + + DLV+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121 L +++ LP+L+++A++ + E GA DY+ KP + L+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 VNEPRLENDLILIGGL 137 +LE+D L Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.024 Identities = 43/305 (14%), Positives = 101/305 (33%), Gaps = 80/305 (26%) Query: 136 NVLSWGVTVLIGAAMLGCLLLWVWPHWRDLERLK-ETARRLGQGQMAE----RTHISPHS 190 LS V++ M L W +++ ++ + + + Q A+ + I+PH Sbjct: 116 LALSIIFNVVVVTFMWSLLYF-GWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHF 174 Query: 191 NIGELAGVFDTMASDLERHVNQQRELLNAVSHELRTPLTRLDFGLVLLFDEVPPASRKRL 250 + + + + + + RE+L ++S +R L + V L DE+ Sbjct: 175 ----MFNALNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADEL-------- 222 Query: 251 LELVGHVRELDELVLELLSYSRLYNADQARERVEVSLLELVDSVLGGFAEELDGRGIQWE 310 + + L+L S + + Q ++ +++++ Sbjct: 223 --------TVVDSYLQLASI-QFEDRLQFENQINPAIMDV-------------------- 253 Query: 311 VRAEGELPRFVLDPRLTARAVQNLVRNAMRYCDESLLLRLRLEADGACL-LTVEDDGIGV 369 ++P ++ V+N +++ + + + L+ D + L VE+ G Sbjct: 254 -----QVPPMLVQT-----LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA 303 Query: 370 PVEERERVFQPFYRLDRSRDRNTGGFGLGLAISRRAIE---GQGGTLTLAQSALGGAQFR 426 +E G GL R ++ G + L+ G Sbjct: 304 LKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLS-EKQGKVNAM 344 Query: 427 IRLPA 431 + +P Sbjct: 345 VLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.0 bits (161), Expect = 2e-13 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 569 RLLLVDDALDLRAVMREYLTERGFDVTDVGDANSALERFRHGGPFDLVITDIGLPGGFSG 628 +L+ DD +R V+ + L+ G+DV +A + G DLV+TD+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDE-NA 62 Query: 629 RQVAKAMRMQLAQQKILFITGYADQTIEAQLLDQPGTALLNKPFSLALLADEALRMLEA 687 + ++ +L ++ + ++ L KPF L L R L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.0 bits (226), Expect = 1e-21 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 420 HVLIVEDDPHVRQLLCQALGENGFPCQSAADANEGLKVLRSAQPVDLLITDVGLPGMNGR 479 +L+ +DD +R +L QAL G+ + ++A + + + DL++TDV +P N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDENAF 63 Query: 480 QLAEIARNLRPRLPVLFITGYAETAMAREGFLGAGMHLICKPFELQQLQARVTQILGKP 538 L + RP LPVL ++ A + + KPF+L +L + + L +P Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>adhesinb#Adhesin B signature. Length = 310 Score = 32.5 bits (74), Expect = 0.003 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Query: 318 VELDPDNAD-YRYTLAVTLHELDQLDAAQKQLETVLNRQPANRRARV 363 E DP N + Y L + +L LD K+ + N P ++ V Sbjct: 160 SEKDPANKETYEKNLKAYVEKLSALD---KEAKEKFNNIPGEKKMIV 203
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1101 bits (2849), Expect = 0.0 Identities = 434/1048 (41%), Positives = 647/1048 (61%), Gaps = 25/1048 (2%) Query: 4 SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63 + FFI RPIFA VL+++L++AG++++ QLP+++YP + PP V V AN+PGA+ + + +TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123 +EQ + G++N++YMSS S + G +T+T+TF GTD D AQVQVQN++ P LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183 V + GI+V+K+S MV S + +S+Y N+KD L+RL GVGDVQLFG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 DYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243 Y++R+WLD + LT DV+ ++ QN Q+AAGQLG PA SI Q R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303 N EEF + +R +DG + RLKD+ARVELG Y + + +N +PA + I G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363 + + ++AK+AEL+ FP+GM YD T FV+ SI VV TLFEA++LV LV+ LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER-N 422 RA++IP +AVPV L+GTFA++ FG+S+N L++FG+VLAIG++VDDAIVVVENVER Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 IGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482 + L P EAT+K+MS++ G ++ A+VL AVF+P AF G TG Y+QF++TI + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SAFNSLTLSPALAAVLLK----DHHAPKDRFSRFLDKLLGSWLFSPFNRFFDRASHSYVG 538 S +L L+PAL A LLK +HH K F F FN FD + + Y Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGF------------FGWFNTTFDHSVNHYTN 528 Query: 539 GVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEA 598 V +++ S+G L +YA ++ + F P+ F+P +D+ + QLP A+ +RT+ Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 599 VIKRMSEIALKQPGVADSVAF--PGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAI 656 V+ ++++ LK F G S +G + N+G+ F LKP++ER SA A+ Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 657 AAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAK-S 715 + I+D ++ F P + LGT GF ++ D+ LG++AL + ++ + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 716 HNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGR 775 + L + + + Q +D+EKA+ GV+++DI T+ LG Y NDF GR Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 776 TYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEI 835 ++ VQA+ +FR+ E + +L VR+ GEM+P + F G R+ YNG + EI Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 836 NGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFL 895 G AAPG SSG A A +E L +LP G+ ++WT ++YQ+ LSGN A + + ++ FL Sbjct: 827 QGEAAPGTSSGDAMALMEN-LASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFL 885 Query: 896 VLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIV 955 LAA YESWS+P++V+L+VP+ ++ + + N+++ +GL+ +GL+ KNAILIV Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 956 EFAKDEQAK-GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVA 1014 EFAKD K G + A L A R+RLRPILMTS+AFI+GV+PL S+GAGS ++A+G+ Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 1015 VFSGMIGVTVFGLFLTPVFFFLIRRFVE 1042 V GM+ T+ +F PVFF +IRR + Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 84.1 bits (208), Expect = 2e-18 Identities = 65/322 (20%), Positives = 126/322 (39%), Gaps = 20/322 (6%) Query: 739 IDREKAKTHGVAITDIFDTL-----QVYLGSLYTNDFNRFGRTYQVNVQAEQQFRLDAEQ 793 +D + + + D+ + L Q+ G L G+ ++ A+ +F+ + E+ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASIIAQTRFK-NPEE 245 Query: 794 IGQLKVRNNL-GEMIPLATFLKVSDTSGPDRVM-HYNGFITAEINGAAAPGYSSGQ-AEA 850 G++ +R N G ++ L +V V+ NG A + A G ++ A+A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 851 AIEKL--LKEELPNGM----TFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQYESW 904 KL L+ P GM ++ T I L ++L FLV+ ++ Sbjct: 306 IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF---EAIMLVFLVMYLFLQNM 362 Query: 905 SLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDEQAK 964 L + VP+ LL + G N T G+++ +GL +AI++VE + + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 965 -GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMIGVT 1023 L P A ++ ++ ++ +P+ F G+ + + + S M Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 1024 VFGLFLTPVFFFLIRRFVERRQ 1045 + L LTP + + V Sbjct: 483 LVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 55.2 bits (133), Expect = 2e-10 Identities = 19/102 (18%), Positives = 43/102 (42%) Query: 65 EVRPRVSGQIDQVAFTEGAQVKKGDLLFQIDPRPFQAEVRRLEAQLQQAKATAIRSANEA 124 E++P + + ++ EG V+KGD+L ++ +A+ + ++ L QA+ R + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 125 RRGERLRDSNAISAELAESRSSAAAEARAGVDAIQAQLDLAR 166 R E + + ++ + E I+ Q + Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 40.6 bits (95), Expect = 9e-06 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 9/115 (7%) Query: 104 RRLEAQLQQAKATAIRSANEARRGERLRDSNAISAELAESR-------SSAAAEARAGVD 156 LE + + +A +++ + + + E + + Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 157 AIQAQLDLARLNLSFTRVTAPISGRVSR-AEFTAGNIVTADVTPLTSVVSTDKVY 210 + +L + + AP+S +V + T G +VT L +V D Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA-ETLMVIVPEDDTL 366
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 258 bits (662), Expect = 4e-85 Identities = 123/403 (30%), Positives = 207/403 (51%), Gaps = 10/403 (2%) Query: 3 YSLKALGRQG-VVQLQIDAEDADQARRQAEDQGLRVLSLRSSGGALR-----SMAWRREA 56 Y +AL QG + +A+ A QAR+ ++GL LS+ + G + ++ RR+ Sbjct: 4 YHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKI 63 Query: 57 AF---DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQLYEGRSLSQA 113 DL L +++L+TL+ A +PL +AL+++A++S +++A + ++ EG SL+ A Sbjct: 64 RLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADA 123 Query: 114 LGQQPRVFPPLYVALVQSSERTGALGDALTRYISYRQRLDLVRQKLVGASVYPLLLLLVG 173 + P F LY A+V + E +G L L R Y ++ +R ++ A +YP +L +V Sbjct: 124 MKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVA 183 Query: 174 GGVVLFLLGYVVPRFSQVFEGMGTELPWLSRVLMQVGLFLHAQQAPLALGTVGGVAALWL 233 VV LL VVP+ + F M LP +RVLM + + + L + G A + Sbjct: 184 IAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRV 243 Query: 234 LRRHPRVRYWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMGMARGLLGN 293 + R + R +L LP + + AR+ R+L IL +P+L AM ++ ++ N Sbjct: 244 MLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSN 303 Query: 294 AAA-QGLEQASQRVGEGLPLSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLERCADFHDQ 352 A L A+ V EG+ L AL L P+ ++ +GE+SG L MLER AD D+ Sbjct: 304 DYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDR 363 Query: 353 EIGRWVEWFVKLFEPLLMTFIGLLIGLIVILMYMPIFELASSI 395 E + + LFEPLL+ + ++ IV+ + PI +L + + Sbjct: 364 EFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 183 bits (466), Expect = 5e-63 Identities = 59/141 (41%), Positives = 88/141 (62%), Gaps = 7/141 (4%) Query: 3 RRTNPQRGFTLLELLVVLVVLGLLAGIVAPKYFSQLGRSEAKVARAQIEGLSKALDLYRL 62 R T+ QRGFTLLE++VV+V++G+LA +V P +++ + A + I L ALD+Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 63 EVGHYPNSEQGLQALVVAPS---GEARWTGPYLQKAVPQDPWGRPYIYRQPGENGGEYDL 119 + HYP + QGL++LV AP+ A + K +P DPWG Y+ PGE+G YDL Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGA-YDL 120 Query: 120 LSMGKDGQPGGDGENAEVTSW 140 LS G DG+ G + ++T+W Sbjct: 121 LSAGPDGEMGTED---DITNW 138
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 462 bits (1190), Expect = e-162 Identities = 169/491 (34%), Positives = 256/491 (52%), Gaps = 35/491 (7%) Query: 4 SILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHD 63 +ILV +DD + + LS GY+V + +A I D V+TD +P + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LLRTLVARAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERM 123 LL + PDL V++M+ A++A ++GA+ YL KP L EL + +ALA + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 ERTLSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGT 183 + E L+G S M + L +++ + ++I GE+GT Sbjct: 125 RP-----SKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL--------TLMITGESGT 171 Query: 184 GKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAAD 243 GKELVARALH G R GPF+ N A+IP +L+E+ELFGHEKGAFT A+ R G E A+ Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAE 231 Query: 244 GGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGK 303 GGTLFLDEIG+M + Q +LL++L+ +G + D+R+++ATN +L+Q + QG Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGL 291 Query: 304 FRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLMLGYS 363 FR DL++RL ++ L++P L R +DI L RHF+ + + G RF EA LM + Sbjct: 292 FREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQ-QAEKEGLDVKRFDQEALELMKAHP 350 Query: 364 WPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCM--TLVDEPLAQ---------------- 405 WPGNVREL N++ + L P +V+ + + + D P+ + Sbjct: 351 WPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEE 410 Query: 406 ---QPMATMFEMPRHEPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRI 462 Q A+ + L +ME L+ L T N K+A +LGL+R+ LR +I Sbjct: 411 NMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470 Query: 463 EKLGLTRPDKR 473 +LG++ Sbjct: 471 RELGVSVYRSS 481
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.8 bits (145), Expect = 4e-11 Identities = 21/66 (31%), Positives = 29/66 (43%) Query: 848 ILVVDDYPANLLLLERQLQTLGHHVTLAENGEIALARWQEARFDLVITDCSMPVMDGHEL 907 ILV DD A +L + L G+ V + N DLV+TD MP + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 908 TRRIRS 913 RI+ Sbjct: 66 LPRIKK 71
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 3e-15 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 2 TTVLIVDDHPIVRLSLRLLLERERFHVIGEVGNGSEVAQVARELRPDVVILDIGLPGLDG 61 T+L+ DD +R L L R + V N + + + D+V+ D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 MEVIKRLQSLEPVPKIMVLTGQATDLYVRRCLDAGIGAFVTK 103 +++ R++ P ++V++ Q T + + + G ++ K Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 29.3 bits (65), Expect = 0.012 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 53 SAELHLEQIIAAMRSAHEKGQDVARVHSG-----DPSLYGAIGEQI 93 +AEL + +I A + H +H D +LYG E+I Sbjct: 161 TAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYGYTDEEI 206
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.7 bits (95), Expect = 5e-07 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 73 STWLGRNGIYLEDLYVTPEQRGDGAGRQLLQHIARE-ALANNCGRLEWSVLDWNEPAIGF 131 S W G +ED+ V + R G G LL H A E A N+ L D N A F Sbjct: 84 SNWNGY--ALIEDIAVAKDYRKKGVGTALL-HKAIEWAKENHFCGLMLETQDINISACHF 140 Query: 132 YQKLG 136 Y K Sbjct: 141 YAKHH 145
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 74.3 bits (182), Expect = 1e-18 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 2/171 (1%) Query: 1 MSGLREQQKAMRRETISRTALGLFETQGYQTTTMEQIARLAAVSVPTVFAYFGSKQEILL 60 M+ +Q+ R+ I AL LF QG +T++ +IA+ A V+ ++ +F K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 EKLREADHRAVTEARRRLPEF-DDALEALCCYEAHLTDYAFEVLPAPLWREILPPLLPLL 119 E ++ +F D L L H+ + L EI+ + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 GAEQQGVPDAYRRVNDALVNELKCLLQDLCDSGRLAAGLDVGYAAFLINDY 170 G E V A R + + ++ L+ ++ L A L AA ++ Y Sbjct: 121 G-EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 40.9 bits (96), Expect = 1e-05 Identities = 19/37 (51%), Positives = 24/37 (64%) Query: 493 IAAYTLNGAYQLGLEREIGSITVGKRADIIVLEQDLF 529 IA YT+N A GL EIGS+ VGKRAD+++ F Sbjct: 406 IAKYTINPAIAHGLSHEIGSLEVGKRADLVLWNPAFF 442 Score = 37.0 bits (86), Expect = 2e-04 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Query: 4 AADLIIHNARIYTVDPHRPWAEAVAICGERIVCVGDHG------SVMAYAGPATRLLDAG 57 A D +I NA I +D + + RI +G G V GP T ++ Sbjct: 67 AVDTVITNALI--LDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGE 124 Query: 58 GKLVLPGFVESHWHFSCTAFAFQALVN 84 GK+V G ++SH HF C +AL++ Sbjct: 125 GKIVTAGGMDSHIHFICPQQIEEALMS 151
>cloacin#Cloacin signature. Length = 551 Score = 33.9 bits (77), Expect = 3e-05 Identities = 13/22 (59%), Positives = 13/22 (59%) Query: 62 GGGGGHGGGGHGGGFGGHQGGG 83 GGG GHG GG G GG G G Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTG 78 Score = 26.6 bits (58), Expect = 0.012 Identities = 12/20 (60%), Positives = 12/20 (60%) Query: 64 GGGHGGGGHGGGFGGHQGGG 83 GGG G G H GG GH GG Sbjct: 47 GGGSGSGIHWGGGSGHGNGG 66 Score = 26.6 bits (58), Expect = 0.012 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 3/27 (11%) Query: 60 PPGGGGGHG---GGGHGGGFGGHQGGG 83 P GGG G G GGG G G GG G Sbjct: 45 PWGGGSGSGIHWGGGSGHGNGGGNGNS 71 Score = 25.8 bits (56), Expect = 0.022 Identities = 10/24 (41%), Positives = 11/24 (45%) Query: 61 PGGGGGHGGGGHGGGFGGHQGGGP 84 GGG G+ GGG G G P Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAP 87 Score = 25.1 bits (54), Expect = 0.038 Identities = 11/22 (50%), Positives = 12/22 (54%) Query: 62 GGGGGHGGGGHGGGFGGHQGGG 83 GG G GGG+G GG GG Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGG 79
>BICOMPNTOXIN#Staphylococcal bi-component toxin signature. Length = 315 Score = 31.4 bits (71), Expect = 0.007 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%) Query: 25 IYQTTSFAF-DDTQHGADLFDLKVAGNIYSRIMNPT 59 + Q F F D ++ D LK+ G I SR Sbjct: 58 VTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYN 93
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.027 Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 40 LGIVGPNGSGKSSLLKVLAGL 60 + + G G GKS+L+ L GL Sbjct: 599 VVLEGTGGIGKSTLINTLVGL 619
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.0 bits (83), Expect = 2e-04 Identities = 66/321 (20%), Positives = 111/321 (34%), Gaps = 58/321 (18%) Query: 52 VALLKTFAVFAVAFALRPLGGIVFGALGDRLGRKRILSLTILLMAGSTTLIGLLPTYASI 111 LL +A+ A A P+ G AL DR GR+ +L +++ A ++ P Sbjct: 46 GILLALYALMQFACA--PVLG----ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFL--- 96 Query: 112 GLAAPALLTLARCLQGFSAGGEYAGACAYLMEHAPDNKRAFYGSFVPVSTFSAFACAAVI 171 +L + R + G + G A A AY+ + ++RA + F+ V+ Sbjct: 97 -----WVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 172 AYGLEASLSTEAMNAWGWRIPFLIAAPLGLVGLYLRWRMEETPAFREAVAQGKEHEHSPL 231 GL S PF AA L + + E+ + E PL Sbjct: 151 G-GLMGGFSP--------HAPFFAAAALNGLNFLTGCFL-----LPES----HKGERRPL 192 Query: 232 KETLRHHGRVIRNLGAFISLTALSFYMFTTYFATYLQLVGNLTRAQSLLVT--------- 282 + + R + AL F +QLVG + A ++ Sbjct: 193 RREALNPLASFRWARGMTVVAALMAVFFI------MQLVGQVPAALWVIFGEDRFHWDAT 246 Query: 283 TVALLFAAVGCP-------LAGAFSDRVGRRKTIGFTCLWVMLCVFPAYWLASSGSMSGA 335 T+ + AA G + G + R+G R+ + + LA + A Sbjct: 247 TIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYI---LLAFATRGWMA 303 Query: 336 LLGVILLAVGALCSGVVTAAL 356 ++LLA G + + A L Sbjct: 304 FPIMVLLASGGIGMPALQAML 324
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 779 bits (2012), Expect = 0.0 Identities = 229/1062 (21%), Positives = 429/1062 (40%), Gaps = 55/1062 (5%) Query: 5 LIQFAIEQRLVVMLAVVLMAAVGIHSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64 + F I + + + +++ G + +LP+ P I V ++ PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFAIETAMAGLPGLKQTRSLSRS-GLSQVTVIFDDGTDIFFARQLVNERLQVAREQLPE 123 +T IE M G+ L S S S G +T+ F GTD A+ V +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GIEAGMGPISTGLGEIFLWTVEAQEGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 ++ + +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 VNSIGGHAKQYLIAPEPKRLAAYKLTLNDLIAALERNNANIGAGYI------ERNGEQLL 237 V G I + L YKLT D+I L+ N I AG + Sbjct: 175 VQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVASAEDIANIVI-SSVDGTPIRVSHVAQVGLGEELRSGAATENGREVVLGTVFM 296 I A + + E+ + + + DG+ +R+ VA+V LG E + A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLVEINRNLPKGVVAVTVYDRTNLVEKAIATVKKNLIEGAILVIA 356 G N+ ++A+ AKL E+ P+G+ + YD T V+ +I V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 VLFLFLGNIRAALITAMVIPLSMLFTFTGMFSNKVSANLMSLG--ALDFGIIVDGAVVIV 414 V++LFL N+RA LI + +P+ +L TF + + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQQRHGRMLTRSERFHEVFAAAREARRPLIYGQLIIMVVYLPIFALTGVEG 474 EN R + + + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMEDK---------LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVMALLGAMILSVTFVPAAIALFVTGKVKEEEGL----------VMRTARQ 524 ++ + T+V A+ ++++++ PA A + E + Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYAPVLAWVLGRRKLACAAAAALVLLSGVMASRMGSEFIPSLSEGDFALQALRVPGTSLS 584 Y + +LG A +V V+ R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 585 QSVD-MQQRLEQAIIAQVPEVERVFARTGTAEIASDPMPPNISDAYVMLRPREQWVDPGK 643 ++ + Q + + + VE VF G + N A+V L+P E+ Sbjct: 585 RTQKVLDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDEN 641 Query: 644 PRDELIAQVQRAAASVPGSNYELSQPIQLRFNELISGVRSDVA-VKLFGDDMEVLNRTAA 702 + +I + + + EL + D + G + L + Sbjct: 642 SAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQARN 699 Query: 703 QIAASL-QGVSGASEVKVEQTTGLPVLTIDIDRDKAARHGLNVGDVQDAIAIAVGGRTAG 761 Q+ Q + V+ +++D++KA G+++ D+ I+ A+GG Sbjct: 700 QLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVN 759 Query: 762 TLYEGDRRFDMVVRLSETLRTDVDGLASLLIPVPASAAEGAGQIGFIPLSQVATLNLQLG 821 + R + V+ R + + L + +A G +P S T + G Sbjct: 760 DFIDRGRVKKLYVQADAKFRMLPEDVDKLYVR----SANG----EMVPFSAFTTSHWVYG 811 Query: 822 PNQVSREDGKRVVVVSANVRGRDLGSFVQEAEQALIDQVQVPPGYWTRWGGQFEQLQSAA 881 ++ R +G + + + L ++P G W G Q + + Sbjct: 812 SPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSG 869 Query: 882 ERLQVVVPVALLLVMALLLMMFNNLRDGLLVFTGIPFALTGGVLALWVRDIPLSISAGVG 941 + +V ++ ++V L ++ + + V +P + G +LA + + + VG Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929 Query: 942 FIALSGVAVLNGLVMIAFIRGLRE-EGRTLRAAVEEGALTRLRPVLMTALVASLGFIPMA 1000 + G++ N ++++ F + L E EG+ + A RLRP+LMT+L LG +P+A Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 1001 LATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQWAYRR 1042 ++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 9e-07 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 13/136 (9%) Query: 140 ASQQISDLRSEQQAAQRRLELARLTFQREQQLWQERISAEQDYLQARQALQEAEIALANA 199 A ++ +S+ + + + A+ +Q QL++ I + L E+A Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 200 RQKVAAVGPAGAGNRYELRAPFDAVVVE-KHLTVGEVVDETSNAFTLS-DLSRVWATFAV 257 RQ +RAP V + K T G VV + + + T V Sbjct: 324 RQ-----------QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALV 372 Query: 258 APRDLGKVVTGREVTV 273 +D+G + G+ + Sbjct: 373 QNKDIGFINVGQNAII 388 Score = 35.6 bits (82), Expect = 4e-04 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 13/131 (9%) Query: 79 AGIQLAAAGPRELGTAISFPGEIRFDEDRTAHVVPRVPGVVEAVQAELGQAVKRGQVLAV 138 I + ++ + G++ + P +V+ + + G++V++G VL Sbjct: 68 LVIAFILSVLGQVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLK 126 Query: 139 IASQQISDLRSEQQAAQRRLELARLTFQREQ---------QLWQERISAEQDYLQARQAL 189 + + ++ Q L ARL R Q +L + ++ E + + Sbjct: 127 LTALG---AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 190 QEAEIALANAR 200 +L + Sbjct: 184 VLRLTSLIKEQ 194
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.045 Identities = 8/95 (8%), Positives = 23/95 (24%), Gaps = 9/95 (9%) Query: 144 ARLAVAGAGQAIAQLDLERQRNALRADVVQAFHAALRAQTALELAQQSQALTERGLRVVQ 203 + L A A L+ E + ++ +L Q + Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNEL---------RVYKSQLEQIESEILSAKEEYQL 291 Query: 204 GRVTAGQSSPVEATRAQVQLAQAQAEVRRAKTQRS 238 + + + E+ + + ++ Sbjct: 292 VTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 6e-23 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%) Query: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65 IL+ DDD IR ++ L + G I ++ + ++ A DL+V D++MP ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRTR 125 L ++ + PVL+++A+N I E GA DYL KPF EL+ I L + Sbjct: 65 LLPRIKKARPD-LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 126 MLPPNL 131 P L Sbjct: 124 RRPSKL 129
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.008 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 29/104 (27%) Query: 334 LVDNALKFA-------GAAELQVSREGSTTIIRVLDNGPGIPGDELDEVLKPFYRVEGSR 386 LV+N +K G L+ +++ T + V + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN---------------- 306 Query: 387 NRSTGGTGLGLAIAHQLIQAMGG---RLTLSNREQGGLCAQIEL 427 + TG GL + +Q + G ++ LS +QG + A + + Sbjct: 307 --TKESTGTGLQNVRERLQMLYGTEAQIKLSE-KQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.4 bits (118), Expect = 2e-09 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 3 RILLIDDTQSKLGRLRAALSEAGFEIIEAPDLTIDLPACVETVRPDVVLIDTDSPDRDVM 62 IL+ DD + L ALS AG+++ + L + D+V+ D PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAA-TLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EQVVLVSRDQPR-PIVLFTDEHDPGMMRQAIQAGVSAYIVEGIHAARLQPILDVAMARFE 121 + + + + +P P+++ + ++ +A + G Y+ + L I+ A+A + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 SDQA 125 + Sbjct: 124 RRPS 127
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.3 bits (89), Expect = 5e-05 Identities = 79/415 (19%), Positives = 141/415 (33%), Gaps = 81/415 (19%) Query: 38 IAADLQLSAQQRGLMVATPILAGAILRFAMGVLVDRLSPKTAGLIGQVVVIVALAAAWYL 97 IA D + +L +I G L D+L K L G ++ + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFV- 98 Query: 98 GVHSYEQALLLGVFL-GFAGASF-AVSLPLASQWYPPQHQGKAMG-IAGAGNSGTVFAAL 154 HS+ L++ F+ G A+F A+ + + +++ P +++GKA G I G Sbjct: 99 -GHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157 Query: 155 LAPALAAGFGWNNVFGFALIPLSLALVVFALLARNAPQRPKPKAMADYLKAL-------- 206 + +A W+ + LIP+ + V L + + + K D + Sbjct: 158 IGGMIAHYIHWSYLL---LIPMITIITVP-FLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 207 ----GDRDSWWFMFFYSVTFGGFI------------------------------------ 226 S F+ ++F F+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVA 273 Query: 227 GLASALPGYFSDQYGLSPVTAGYYTAACVFAGSL----MRPLGGALADRFGGIRTLLGMY 282 G S +P D + LS G + +F G++ +GG L DR G + L Sbjct: 274 GFVSMVPYMMKDVHQLSTAEIG---SVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGV 330 Query: 283 GVAAICIAAVGFNLPSAAAALALFVSAMLG-LGAGNGAVFQLVPQRFR-QEIGVMTGLI- 339 ++ F L + + + + + +LG L + +V + QE G L+ Sbjct: 331 TFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLN 390 Query: 340 -----GMAGGIG--GFLLAAGL-------GTIKQHTGDYQLGLWLFASLGLLAWF 380 GI G LL+ L + Q T Y L LF+ + +++W Sbjct: 391 FTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWL 445
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 37.8 bits (87), Expect = 1e-04 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Query: 362 VARQLLQAVGVLHRRNLLHRDIKPDNLHLGR-DGQLRLLDFGLAYCPGLSEDPLHELPG- 419 +A +LL L + ++H DIKP N+ R G+ ++D GL G E P Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSG-------EQPKG 302 Query: 420 -TPSYIAPEAFEGH-PPSPRQDLYAVGVTLYHLLTGHYPYGEVEAFQRPRF 468 T S+ APE G+ S + D++ V TL H + G E++ Q RF Sbjct: 303 FTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRF 353
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 133 bits (335), Expect = 3e-38 Identities = 80/365 (21%), Positives = 129/365 (35%), Gaps = 74/365 (20%) Query: 15 VAATSIGAMAQGQGAVETEIFY------KKEFFDSQRDFKNDGN-------LFGGSIGYF 61 +A G Q A + +Y ++ D+ F N+ G GY Sbjct: 8 IAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTG--FINNNGPTHENQLGAGAFGGYQ 65 Query: 62 LTDDVELRLGYDEVHNARGEDGKN-----IKGSNTALDAVYHFNNPYDAIRPYVSAGFSH 116 + V +GYD + + +G Y + D Y G Sbjct: 66 VNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDI---YTRLGGMV 122 Query: 117 -QSLGQTGRGGRDHSTFAN--VGAGAKWYITDMFYARAGVEAQYNI-DQGDTEWAP---- 168 ++ ++ G++H T + G ++ IT R + NI D P Sbjct: 123 WRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGM 182 Query: 169 -SVGVGLNFGGSPKQAEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTVDADGCPAVA 227 S+GV FG APAP Sbjct: 183 LSLGVSYRFGQGEAAPVVAPAPAPAP------------------------------EVQT 212 Query: 228 EVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMKQY--PQTTTVVEGHTDSVGPDAYNQK 285 + ++ DV F+F+K+ +KP + L + + VV G+TD +G DAYNQ Sbjct: 213 KHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQG 272 Query: 286 LSERRANAVKQVLTQQYGVESSRVDSVGYGETRPVADNATEEGR---------AVNRRVE 336 LSERRA +V L + G+ + ++ + G GE+ PV N + + A +RRVE Sbjct: 273 LSERRAQSVVDYLISK-GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331 Query: 337 AQVEA 341 +V+ Sbjct: 332 IEVKG 336
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.0 bits (88), Expect = 4e-06 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 10/74 (13%) Query: 58 DDQPLGFIGFNEN-----HVEMLFVDPAHHRQGIGRALLDFGRQ---SRSAMSVDVNEQN 109 ++ +G I N +E + V + ++G+G ALL + + + Q+ Sbjct: 73 ENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQD 132 Query: 110 PQATA--FYQRYGF 121 +A FY ++ F Sbjct: 133 INISACHFYAKHHF 146
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.6 bits (77), Expect = 0.001 Identities = 11/108 (10%), Positives = 32/108 (29%) Query: 360 QANRARVSKAEALQRAQVARYHGVALSALKDVRQALARYDGERQRLQALDAALVHSQHSF 419 + V + +L + Q + + ++ + A R+ + + Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 420 ALAQGNYRAGTVDGLALLDSEREMISLRASHTEARGRLAQAQVNLFRA 467 + A+L+ E + + + +L Q + + A Sbjct: 238 DDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 114 bits (288), Expect = 2e-30 Identities = 71/427 (16%), Positives = 137/427 (32%), Gaps = 75/427 (17%) Query: 8 PSPAETEQRPSARSRRRLAVIASGSLAAITLLAFTCYWLSTGRY---LETTDDAYVRADW 64 P+ E + P +R R +A + ++AF G+ Sbjct: 43 PAHLELIETPVSRRPRLVAYF----IMGFLVIAFI--LSVLGQVEIVATANGKLTHSGRS 96 Query: 65 VALSPRVAGYVAKVEVADDQPVKAGDVLVRLQNRDYRARLDQARAGVTEAQAALAAAQAS 124 + P V ++ V + + V+ GDVL++L A + ++ + +A+ Q Sbjct: 97 KEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156 Query: 125 -------------------------------QQIATERIDQQQQAILQAEAVVRSATAEQ 153 + E+ Q Q E + AE+ Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216 Query: 154 HRSELDVQRYRGLVRDDAATMQRLETASAHASQAQAARQGAQAALRQQRAQLAMAKARSA 213 + RY L R + + + + + A+ A + + +L + K++ Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 214 QAEAELQ-------------QRAAALARALAHQQLS---------EQDEQDTVIRAPITG 251 Q E+E+ + + E+ +Q +VIRAP++ Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSV 336 Query: 252 VVGQRRVRT-GQYVVPGQPLLAVVPLQQAYVV-ANYKETQLARMRPGQPVEIHVDSFASQ 309 V Q +V T G V + L+ +VP V A + + + GQ I V++F Sbjct: 337 KVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYT 396 Query: 310 ---PLHGHVASFSPASGNVFALLPSDNATGNFTKIVQRFPVRILLDKPLDGPQVLPGMSV 366 L G V + + + D G ++ L + GM+V Sbjct: 397 RYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTG-NKNIPLSSGMAV 448 Query: 367 VSTVDTR 373 + + T Sbjct: 449 TAEIKTG 455
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 94.9 bits (236), Expect = 5e-23 Identities = 71/394 (18%), Positives = 156/394 (39%), Gaps = 17/394 (4%) Query: 23 FMAGMNVHVTSAALPEIRGSLGASFEEGSWISTAYLVAEIVMIPLTAWLVDVFSLRRVMW 82 F + +N V + +LP+I +W++TA+++ + + L D ++R++ Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 83 TGSLIFLIASVACSWAPN-LEAMIVIRVIQGAAGAVLIPLSFQLIITELPASKMAMGMAL 141 G +I SV + +I+ R IQGA A L ++ +P L Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 142 FSLANSVAQAAGPSIGGWLTDAYSWRWIFYLQLFPGIALLLAIAWSIEAKPMKLELLRKG 201 ++ + GP+IGG + W ++ + + I + + + +K Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHF---- 199 Query: 202 DWLGIAAMVIGLGGLQIVLEEGGRLDWFGSPLIVGMSVVAAIALVVFVVTQLFGQRAFIN 261 D GI M +G+ + +L F + + +V+ ++ ++FV F++ Sbjct: 200 DIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 262 LRLLGHYNFGVASVAMFIFGAATFGLVFLVPNYLSQLQGFSAHDVGVALIAYGVVQLLL- 320 L + F + + I G V +VP + + S ++G +I G + +++ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 321 APLMPRLMGWTSAKFMVASGFLIMALGCWLGAGLSADSADNVIIPSTVVRGIGQPFIMVA 380 + L+ +++ G +++ +L A ++ + V G F Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 381 LSVLAVAGLDKREAGSASAVFSMLRNLGGAIGTA 414 +S + + L ++EAG+ ++ + L G A Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 783 bits (2024), Expect = 0.0 Identities = 312/1029 (30%), Positives = 520/1029 (50%), Gaps = 29/1029 (2%) Query: 5 DVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQGFVT 64 + F+RRP+ A V++ ++++ G A+ +LP+ QYP + +++S YPGA A+ +Q VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 QPITQAVSSVEGIDYLSSSSQQ-GRSLITLRMVLNRDSTQALAETMAKVNQVRYRLPEKA 123 Q I Q ++ ++ + Y+SS+S G ITL D A + K+ LP++ Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 YDPVVELSAGDSTAVAYVGFASDS--LSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQR 181 + + S+ + GF SD+ + ++SDY++ V+ S ++GV VQ FG Q Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY 182 Query: 182 LAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQV------RGQYVLADIQVDTDLT 235 AMR+WLD++ + +T DV ++ N Q GQ+ GQ + A I T Sbjct: 183 -AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 RVEDFRELIIR-NDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLV 294 E+F ++ +R N +VRL+D+ VEL A ++GKPA LG+ N L Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 IVEGIRQLLPQIQQTLPPGVNVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGS 354 + I+ L ++Q P G+ V Y+T F+ SIHEV++TL EA+++V LV++L L + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 LRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIE 414 +R+ LI +A+P+ +LG ++ FG+S+N LT+ MVLAIGL+VDDAIVVVENV R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 415 EGKS-PVAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVS 473 E K P A +I G ++ + + L+AV+ P+ GG TG ++R+F++T+ A+ +S Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GIVALTLSPVMSSLLLQPGQQH-----GAMATLADRLFGTLSGAYGRVLAYTLAHRWISG 528 +VAL L+P + + LL+P G + F Y + L Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 GVALLVCLSLPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALK-LDQVMKSI 587 + L+ + L+L P EDQ LT I+ P A+ E ++ + D +K+ Sbjct: 542 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 601 Query: 588 AET-----TDTWIINGTDGPAASFGGINLSAWQARKR---SAAQVQAQLQQAVADIEGSS 639 T A ++L W+ R SA V + + + I Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 640 IFAFQVA--SLPGSSGGLPVQMVLRSAQDYPELFQTMEVLKQRARDS-GLFAVVDSDLDY 696 + F + G++ G +++ ++ + L Q L A V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 697 NNPVVKVRVDRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLT 756 + K+ VD+ KA +LG+S+ I +++ +G Y+N F GR + Q+ R+ Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 757 PAALSRQYVRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVA 816 P + + YVR+ +G +VP + RL +++ + +Q APG S G+A+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMA 841 Query: 817 FLEQLTAELPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIIL 876 +E L ++LP G +DW S Q G + VV++L LAA YES P+ ++ Sbjct: 842 LMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVM 901 Query: 877 VTVPLSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAA 936 + VPL I G LL L ++Y +GL+T IGL +K+ IL+V FA ++ ++ Sbjct: 902 LVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVE 961 Query: 937 AIIRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVL 996 A + A ++RLRP+LMT+ A GVLPL ++GAG+ ++ +G+ ++ GM+ TL +F + Sbjct: 962 ATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFV 1021 Query: 997 PTIYAWLAR 1005 P + + R Sbjct: 1022 PVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.9 bits (88), Expect = 5e-05 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 57 ASGELEAVNQVQ-VAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQALRVQLQARLRN 115 A+G+L + + + + I + G++V G +L++L +A ++ Q+ L Sbjct: 86 ANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQ 145 Query: 116 ADVVLQRSRKLR 127 A + R + L Sbjct: 146 ARLEQTRYQILS 157 Score = 31.3 bits (71), Expect = 0.006 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 13/135 (9%) Query: 91 GQLLVQLNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGE 150 QL + L + + +L + KLR L E Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL-----------TLE 317 Query: 151 LQHVEALIAQKAIRAPFAGKLGIRRVH-QGQYLGAGETIVSLA-DISQLHVNFALGEQAA 208 L E IRAP + K+ +VH +G + ET++ + + L V + + Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDI 377 Query: 209 PEVHAGQVLALTVDA 223 ++ GQ + V+A Sbjct: 378 GFINVGQNAIIKVEA 392
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (340), Expect = 9e-41 Identities = 84/254 (33%), Positives = 127/254 (50%), Gaps = 14/254 (5%) Query: 12 VEGKVALVTGAASGIGKAIALLLHARGAKVVAEDIDPAVEDLARPGLVPLV-------AD 64 +EGK+A +TGAA GIG+A+A L ++GA + A D +P + L AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 65 ISEDGAAERAVGLAVEQFGRLDILVNNAGIIINKLVIDMTREDWERIQAVNTTAAFLHCR 124 + + A + + G +DILVN AG++ L+ ++ E+WE +VN+T F R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 125 EAVKAMMPNKSGAIVNIASYAAYFAFPTIAAYTASKGALAQLTRTLALEAIEYGIRVNAI 184 K MM +SG+IV + S A ++AAY +SK A T+ L LE EY IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 GVGDVVTNILND--VVEDGP-----GFLAKHGEAAPIGRAAQPEEIAELVAFLASERASF 237 G T++ E+G G L P+ + A+P +IA+ V FL S +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 238 MVGSVVMADGGMTV 251 + + DGG T+ Sbjct: 246 ITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.1 bits (210), Expect = 1e-21 Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 14/196 (7%) Query: 8 LVTGCSTGFGRHIAAHLLKQGERVVVTARKTEQVRDLASLGQSLV-----LPLDVTDAEQ 62 +TG + G G +A L QG + E++ + S ++ P DV D+ Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAA 71 Query: 63 AKAVVAEAERVFGRVDVLVNNAGIGYFAAVEETDPQAARRLFDVNFFGTSHMIQAVLPGM 122 + A ER G +D+LVN AG+ + + F VN G + ++V M Sbjct: 72 IDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYM 131 Query: 123 RQRRQGMIVNLTSIGGLAGFP--AVGYYCASKFAVEGLSETLRAELEPLGIGVMTVEPSA 180 RR G IV + S AG P ++ Y +SK A ++ L EL I V P + Sbjct: 132 MDRRSGSIVTVGS--NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 181 FRTE-----WAGSSGE 191 T+ WA +G Sbjct: 190 TETDMQWSLWADENGA 205
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 2e-12 Identities = 26/105 (24%), Positives = 45/105 (42%) Query: 818 HVLVAEDNVINQLILRDQLEELGCSVTLVSDGEQALQTWQREHFDLLLTDVNMPGTNGYE 877 +LVA+D+ + +L L G V + S+ + DL++TDV MP N ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 878 LTRALRQLGCTRPIVGATANALRGEEELCLAAGMDRCLIKPFNLQ 922 L +++ P++ +A G L KPF+L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.9 bits (166), Expect = 2e-14 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 6/140 (4%) Query: 1 MKTFNILIVEDHPFQHMYLQHLFSELGSFNLEAARDGQEALERLRQRDFDLVLTDLLMPG 60 M IL+ +D L S G +++ + + D DLV+TD++MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 MDGVQFIQHLAGLRHKPGLAIMSVASRRMLMAASLVAKNLGVDVLGLISKPVEPAALRSL 120 + + + R + +MS + M + + KP + L + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEK-----GAYDYLPKPFDLTELIGI 114 Query: 121 IDQLQLHHQAPAQAAPATPE 140 I + + + Sbjct: 115 IGRALAEPKRRPSKLEDDSQ 134
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 5e-17 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 7/155 (4%) Query: 835 RLHILVAEDNPINQAILQEQLEALGCTTVVATNGEQAMQRWQPGLFDLVLTDVNMPLMNG 894 ILVA+D+ + +L + L G + +N + G DLV+TDV MP N Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 895 YELARTLRQHDARLPIIGVTANALREEGQRCLEVGMNAWMVKPLSLQALRSHLVRLCRPA 954 ++L +++ LP++ ++A + E G ++ KP L L+ + A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT----ELIGIIGRA 118 Query: 955 LAEAPSRAQADSLSASPSPAATDTVQVSDAMRALF 989 LAE R + V S AM+ ++ Sbjct: 119 LAEPKRRPSKLEDDSQDGM---PLVGRSAAMQEIY 150
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.4 bits (118), Expect = 3e-09 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 10/155 (6%) Query: 1 MEKLKVIIADDHPIVLLGVRELVERDPRFSVVGEAVCSQGLIELLERQPVDMVISDYNMP 60 M +++ADD + + + + R + V + + + D+V++D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLW-RWIAAGDGDLVVTDVVMP 58 Query: 61 ADSPYGDGLKLIDYLKRHYPAVRILVLTMISNPLILTRLQELGVDGVIQKS----QLHGE 116 + L+ +K+ P + +LV++ + + + E G + K +L G Sbjct: 59 D----ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 117 IEKALNAVARNSTYRAPAPARQSVIACNTAIDQRV 151 I +AL R + + +A Q + Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 727 bits (1879), Expect = 0.0 Identities = 277/865 (32%), Positives = 430/865 (49%), Gaps = 52/865 (6%) Query: 30 KLNALSLVICTALPSLASAQDAAHLQGFNTTFLQG-AQSAVDLQMLLSANSVLPGNYRVD 88 +L + + A A A ++ FN FL Q+ DL + + PG YRVD Sbjct: 22 RLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVD 81 Query: 89 LYSNEVLVGRRDIEFNRHPQTGRVEPCLTLELLEQLGIDMDKLKAQGRLDTASACHDLAA 148 +Y N + RD+ FN + PCLT L +G++ + L AC L + Sbjct: 82 IYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLAD-DACVPLTS 140 Query: 149 LIDQASLSYDSGHLRLSASIPQVAMKRGLRGYVDPQLWDAGVSAAFVNYQFNTSRSAGD- 207 +I A+ D G RL+ +IPQ M RGY+ P+LWD G++A +NY F+ + Sbjct: 141 MIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRI 200 Query: 208 AETRIANNLSLRNGINLGSWRLRNESNFSSGTGQPDT-----FKSNRSYVQHDVTALKGQ 262 L+L++G+N+G+WRLR+ + +S + + ++ ++++ D+ L+ + Sbjct: 201 GGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSR 260 Query: 263 FSAGDIFSDTDLFDSVRYRGLKLASDEGMRADSERGYAPVVRGVAQTSARVEIRQNNYVL 322 + GD ++ D+FD + +RG +LASD+ M DS+RG+APV+ G+A+ +A+V I+QN Y + Sbjct: 261 LTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDI 320 Query: 323 YTANVPPGPFEISDIYPSGSNGDLEVTIIEADGRRRVTVQAFSSLPLMVRGGQVKYSLSA 382 Y + VPPGPF I+DIY +G++GDL+VTI EADG ++ +SS+PL+ R G +YS++A Sbjct: 321 YNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITA 380 Query: 383 GRYNSNTEGLATPQMLSTTLAYGLTNTVTGVFGLQATQDYKAMAVGSGLNT-LLGAFSLD 441 G Y S P+ +TL +GL T G Q Y+A G G N LGA S+D Sbjct: 381 GEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVD 440 Query: 442 VTHSSSKAQGQ-TTQGNSLRALYAKTFTGTDTNFTLAAYRYSTEGFRTLTQHVEDLSASA 500 +T ++S G S+R LY K+ + TN L YRYST G+ Sbjct: 441 MTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGY 500 Query: 501 IKRS------------------GNSKTRTDLTINQSLGRNRAFGSLYLTATDQRYWNRGG 542 + N + + LT+ Q LGR +LYL+ + Q YW Sbjct: 501 NIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT---STLYLSGSHQTYWGTSN 557 Query: 543 S-QSLTAGYSNNWGEISYNLDVSRTKELGNSGPSGQDTQLNLSVSFPLGSRARAPRAFV- 600 + AG + + +I++ L S TK N+ G+D L L+V+ P R+ Sbjct: 558 VDEQFQAGLNTAFEDINWTLSYSLTK---NAWQKGRDQMLALNVNIPFSHWLRSDSKSQW 614 Query: 601 --------TTSTQKGNDTTQAGINGYLSETSDTFYSIQGGHSR----TSGSSASANLNTR 648 + G T AG+ G L E ++ YS+Q G++ SGS+ A LN R Sbjct: 615 RHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYR 674 Query: 649 TSVADISLGYSQGRGYDSQNLNIAGAVVAHQGGINLGQSLSETFALAEVPGVKGAKISSY 708 + ++GYS ++G V+AH G+ LGQ L++T L + PG K AK+ + Sbjct: 675 GGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQ 734 Query: 709 SGVETGRNGYAVIPSAQPYRVNWISLDTSDLGGDIEIDNATQQLVPRRGAVVLARYTGKS 768 +GV T GYAV+P A YR N ++LDT+ L ++++DNA +VP RGA+V A + + Sbjct: 735 TGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARV 794 Query: 769 GRRVQFELFDERGQLIPFGASVEDAAGQQLAISDPSGKALLLLEQDQGSLTIKWGER--- 825 G ++ L + +PFGA V + Q I +G+ L G + +KWGE Sbjct: 795 GIKLLMTLTHN-NKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENA 853 Query: 826 QCSAPYNLPERDKAVNYERQRLACR 850 C A Y LP + + CR Sbjct: 854 HCVANYQLPPESQQQLLTQLSAECR 878
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.6 bits (66), Expect = 0.012 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 174 PKPKKVSKAKVEAPAPK-VEKPAADLGLPEQAAANPVAPAPAAAPLVEATPAPAGVAPAS 232 P+P K + +E P PK KP + + + A+P PA + A+ Sbjct: 84 PEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTAT 143 Query: 233 EAAAAPVVDDSQGSQPVAPPAEAAPIQVQQ 262 A + PV + G + ++ P + Q Sbjct: 144 AATSKPVTSVASGPRALSRNQPQYPARAQA 173
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 113 bits (285), Expect = 1e-32 Identities = 75/257 (29%), Positives = 116/257 (45%), Gaps = 18/257 (7%) Query: 10 GHNGRVALVTGAARGIGLGIAAWLICEGWQVVLSDLDRQRGTKVA---KALGDNAWFITM 66 G G++A +TGAA+GIG +A L +G + D + ++ KV KA +A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 67 DVADEAQVSAGVSEVLGQFGRLDALVCNAAIANPHNQTLESLSLAQWNRVLAVNLSGPML 126 DV D A + + + + G +D LV A + P + SLS +W +VN +G Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRP--GLIHSLSDEEWEATFSVNSTGVFN 122 Query: 127 LAKHCAPYLRA-HNGAIVNLTSTRARQSEPDTEAYAASKGGLVALTHALAMSLGPE-IRV 184 ++ + Y+ +G+IV + S A AYA+SK V T L + L IR Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 185 NAVSPG----------WIDARDPSQRRAEPLSEADHAQHPTGRVGTVEDVAAMVAWLLSR 234 N VSPG W D + +++ + E P ++ D+A V +L+S Sbjct: 183 NIVSPGSTETDMQWSLWAD-ENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 235 QAAFVTGQEFVVDGGMT 251 QA +T VDGG T Sbjct: 242 QAGHITMHNLCVDGGAT 258
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.4 bits (66), Expect = 0.016 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%) Query: 206 NDWRR-CREVSGAEDIMLGRGLVSRPDLGLQIAAARDGRDYQPMSWHELLPLLREFW--- 261 +W+ R +D V P L + + P++ E +PLL W Sbjct: 43 REWQAEYRSYFNPDDEG-----VDEPPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRG 97 Query: 262 --RQAQAKLSPRY 272 R QA +S RY Sbjct: 98 RCRGCQAPISARY 110
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.4 bits (120), Expect = 3e-10 Identities = 22/85 (25%), Positives = 34/85 (40%) Query: 1 MSDKKSKTRERILEAARSALIQHGPAEPSVSQVMGAAGLTVGGFYAHFDSKDELMLEAFR 60 + +TR+ IL+ A Q G + S+ ++ AAG+T G Y HF K +L E + Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 61 QLLGERRALLAQVDPNLDGAGRRAL 85 L + G L Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVL 89
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 152 bits (385), Expect = 7e-44 Identities = 67/411 (16%), Positives = 140/411 (34%), Gaps = 94/411 (22%) Query: 43 RRLTLFFALVAIIALAFLGHWYFKGRFYESTDNAYVQGEIT------RISSQLGARIETV 96 R + F +IA G+ E A G++T I + ++ + Sbjct: 58 RLVAYFIMGFLVIAFI----LSVLGQ-VEIV--ATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 97 PVEDNQHVSKGDLLVR------------LEAADFELAVERAR------------------ 126 V++ + V KGD+L++ +++ + +E+ R Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 127 ----------------------AALATREAEYAQAQSRLTQQGSLIAAGQAQLAATQATF 164 +T + + Q + L ++ + A++ + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 165 DRSRLDLSRAEKLRKPGFVS-------EERVTTLSADSHVAGSQVDKARADLQSQRQQVT 217 + L L ++ E + + V SQ+++ +++ S +++ Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 218 ALNAELKRL--------DAQIANARTDLAQAELNLTRCEIHAPISGTIGQRNAR-NGQVV 268 + K I +LA+ E I AP+S + Q G VV Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 269 QAGAYLLSIVPDED-IWVQANFKETQIGRMHPGQRAELLFDSYPDT---PIEGRVDSLFA 324 L+ IVP++D + V A + IG ++ GQ A + +++P T + G+V ++ Sbjct: 351 TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Query: 325 ASGAQFSLLPPDNATGNFTKVVQRIPIKLTFSADNPLHGRIRPGMSVTATV 375 + D G V+ I + + + + GM+VTA + Sbjct: 411 DA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAVTAEI 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 102 bits (256), Expect = 2e-25 Identities = 85/412 (20%), Positives = 169/412 (41%), Gaps = 24/412 (5%) Query: 18 WIAVMSVMLGAFMAVLDIQITNSSLKDIQGALSATLEEGSWISTSYLVAEIIMIPLTAWL 77 W+ ++S F +VL+ + N SL DI + +W++T++++ I + L Sbjct: 18 WLCILS-----FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKL 72 Query: 78 VQLLSARRLAVWVSGGFLLSSLLCSMAWNLESMILF-RALQGFTGGALIPLAFTLTLIKL 136 L +RL ++ S++ + + S+++ R +QG A L + + Sbjct: 73 SDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI 132 Query: 137 PEHHRAKGMAMFAMTATFAPSIGPTLGGWLTENWGWEYIFYINIPPGLLMIAGLLYGLEK 196 P+ +R K + +GP +GG + W Y+ I + ++ + L+ L+K Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMIT-IITVPFLMKLLKK 191 Query: 197 KEAHWELLKSTDYAGIVTLGLGLGCLQVFLEEGHRKDWLESHLIVGLGSVALVSLITFVI 256 + D GI+ + +G+ +F + S LI V+++S + FV Sbjct: 192 EVRIKGHF---DIKGIILMSVGIVFFMLFT-----TSYSISFLI-----VSVLSFLIFVK 238 Query: 257 LQFSKPHPLINLRILGNRNFGLSSIASLGMGVGLYGSIYLLPLYLAQVQGYNALQIGEVI 316 P ++ + N F + + + + G + ++P + V + +IG VI Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI 298 Query: 317 MWMG-IPQLFLIPLVPQLMKVISPKVLCALGFCLFGAASFGSGVLNPDFAGPQFNHIQII 375 ++ G + + + L+ P + +G + + L F I I+ Sbjct: 299 IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL--LETTSWFMTIIIV 356 Query: 376 RALG-QPMIMVTISLIATAYIQQQDAGSASSLFNILRNLGGAIGIALLATLL 426 LG IS I ++ ++QQ+AG+ SL N L GIA++ LL Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.017 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 612 AKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRD---EIAQLRERL 668 +A E Y+++L +I I +E+ + + E +LR I L L Sbjct: 262 VEAVNELRVYKSQL---EQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLEL 318 Query: 669 IS 670 Sbjct: 319 AK 320
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 168 bits (427), Expect = 3e-54 Identities = 87/236 (36%), Positives = 132/236 (55%), Gaps = 7/236 (2%) Query: 1 MKQHRLAAAVALVGLVLAGCDQQASSPELKTPAQKASYGIGLNMGKSLAQEGMEDLDSKA 60 MK + AA+ +GL ++ + L T K SY IG ++GK+ +G+ D++ Sbjct: 1 MKMKLVTAAI--MGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGI-DINPDV 57 Query: 61 VALGIEDAVSKKEQRIKDEELVEAFTALQK----RAEERLAKASEEAASAGKKFLEENAK 116 +A G++D +S + + +E++ + + QK + K +EE + G FL N Sbjct: 58 LAKGMQDGMSGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKS 117 Query: 117 KPGVVTTASGLQYEVVKKADGPQPKPTDVVTVHYEGKLIDGKVFDSSVERGSPIDLPVSG 176 KPG+V SGLQY+++ G +P +D VTV Y G LIDG VFDS+ + G P VS Sbjct: 118 KPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQ 177 Query: 177 VIPGWVEGLQLMHVGEKYKLFIPAELAYGAQSPSPLIPANSVLVFDLELIAIKDPA 232 VIPGW E LQLM G +++F+PA+LAYG +S I N L+F + LI++K A Sbjct: 178 VIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVKKAA 233
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.003 Identities = 77/432 (17%), Positives = 135/432 (31%), Gaps = 64/432 (14%) Query: 35 LLVATIINYVDRVNISI---AAPFMAKDLGLD---KVEMGLIFSAFAWTYALALVPAGFI 88 L+V +D V I + P + +DL G++ + +A G + Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 89 ADRFGSRLTYGVSLISWSAVTVAQGLASGFASLF------GLRLAVGAMEAPAF----PA 138 +DRFG R VSL + A L+ G+ A GA+ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDG 126 Query: 139 NSRAVTVWFPARERGMASSIYVCGQYLGTALFTGALLWLATTYDWRHVFYSTGLVGILFG 198 + R F G S+ + G G L G L+ + F++ + L Sbjct: 127 DER--ARHF-----GFMSACFGFGMVAGPVL--GGLM---GGFSPHAPFFAAAALNGLNF 174 Query: 199 VVWLVLYRDPLNCKKVSKEELAYIEHGGGLVKSSQQRTRFDWRQVAELFRYRQVWAICLG 258 + L + ++ A F W V A+ Sbjct: 175 LTGCFLLPESHKGERRPLRREA-----------LNPLASFRWA-----RGMTVVAALMAV 218 Query: 259 KFASTSALYFFLTWFPTYLIEERQLTLIKVGI-FAVMPFIGATVGILLAGIVSDLLIRKG 317 F + + + +GI A + + ++ G V+ Sbjct: 219 FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA------- 271 Query: 318 YSLSFARKLPLVVGSML--GMSIVLVNFTDSNVLCIAVLTLAFFAQGIASSSWAAV-SEV 374 + + ++ M+ G +L+ F + ++ L + GI + A+ S Sbjct: 272 ---ARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVL-LASGGIGMPALQAMLSRQ 327 Query: 375 APKELIGLTGGITSLAANIGGIVTPIVIGAIVHASGSFAMAFWFIGGVALMGTLSYSLLL 434 +E G G + ++ IV P++ AI AS + W G + G Y L L Sbjct: 328 VDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS----ITTW-NGWAWIAGAALYLLCL 382 Query: 435 GKLYRIELKAAG 446 L R AG Sbjct: 383 PALRRGLWSGAG 394
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 33.8 bits (77), Expect = 5e-04 Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 120 EGLPWEGAKVFEASAPMTAIVPASECDWPLDTSLWLQVNGEERQRAHLSQQTWA 173 E + W G VF SA +T S P + +++ N E+ ++A LS Q+W+ Sbjct: 60 ENVSWNGTNVFGKSANLTFKFLQSVSSIPSGDTGFVKFNAEQIEQAKLSLQSWS 113
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 116 bits (291), Expect = 2e-33 Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 3/193 (1%) Query: 6 KIALVTGAGSGIGRAVALALLEDGFSLVLAGRRAEPLQAVVAQALAAGGEALAVPTDVRD 65 KIA +TGA GIG AVA L G + E L+ VV+ A A A P DVRD Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 66 EQSVAQLFATIEEVHGRLDVIFNNAGINAPAVPVDELPLENWRNVMATNVDGVFLCARAA 125 ++ ++ A IE G +D++ N AG+ P + L E W + N GVF +R+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 126 FGLMRRQQPQGGRIINNGSISAHTPRPFTAPYTASKHAVLGLTKALALDGRPYHIVCSQL 185 M + + G I+ GS A PR A Y +SK A + TK L L+ Y+I C+ + Sbjct: 128 SKYMMDR--RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 186 DIGNALTELSERM 198 G+ T++ + Sbjct: 186 SPGSTETDMQWSL 198
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 49.1 bits (117), Expect = 2e-08 Identities = 77/397 (19%), Positives = 138/397 (34%), Gaps = 59/397 (14%) Query: 16 FWACFGGWSLDALEVQMFGLAIPALIAAFSLTKGDAGLISGLTLVTSAIGGWLGGTLSDR 75 W C + L + +++P + F+ ++ ++T +IG + G LSD+ Sbjct: 17 IWLCILSF-FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 76 YGRVRTLQWMILWFSFFTFLSAFVTGFYPLL-FVKAMQGFGIGGEWAAGAVLMAETINPK 134 G R L + I+ F + + F+ LL + +QG G A V++A I + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 135 YRGKVMGTVQSAWAVGWGLAVALFTLIYSLVPQEFAWRVMFFVGLLPSLLIIWVRRNVPE 194 RGK G + S A+G G+ I ++ W + L+P + II V + Sbjct: 136 NRGKAFGLIGSIVAMGEGVG----PAIGGMIAHYIHWSYLL---LIPMITIITVPFLMKL 188 Query: 195 PDSFQRLQKEKAIPSSFLQSMA-----------------------GIFRPELLRVT---- 227 R++ I L S+ IF + +VT Sbjct: 189 LKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 228 ----------LLGGLLGLGAHGGYHAVMTWLPTFLKTERNLSVLNSG------GYLAVII 271 ++G L G G ++ +P +K LS G G ++VII Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 272 LAFWCGCVVSGLLIDRIGRRKNILLFALCCVLTVQAYVFFPLTNTQMLFLGFPLGF-FAA 330 + + G+L+DR G + + ++ F T + + + + Sbjct: 309 FGY-----IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS 363 Query: 331 GIPASLGAFFNELYPADVRGAGVGFCYNFGRVLSAVF 367 + + GAG+ NF LS Sbjct: 364 FTKTVISTIVSSSLKQQEAGAGMSL-LNFTSFLSEGT 399
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.8 bits (132), Expect = 2e-10 Identities = 83/394 (21%), Positives = 137/394 (34%), Gaps = 17/394 (4%) Query: 23 TVRLLLTTTFTLTVARALTLPYLVVYLAD--NFQLPISQIGLLIGGALIVASLLSLYGGH 80 + ++L+T V L +P L L D + + G+L+ ++ + G Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 81 LVDTLSNHTLVSASTLLFALAFVGAVASRSALPFFFCLVLINLALAVVDIAAKAGFCALL 140 L D ++ S A+ + +A+ L + ++ A A + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYA-IMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 141 PVDERAEVFAIKYTLSNVGYAAGPLLGVAMLELNDHVPFLASALL-GLAMCLAYWRLGDR 199 DERA F G AGP+LG M + H PF A+A L GL + L + Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 200 SLQASAPDKPAAGFGQVALGLARDRRLVCFTVGGVLSAVVFGQFTAYLSQYLVVTSNPAE 259 P + A + AR +V + + GQ A L + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHW 243 Query: 260 AARLIGYLVTTNAVTVIALQ-YLIGRRISRQRLMPWLLAGMGLFIAGLLGFALAGSVLAW 318 A IG + + Q + G +R L+ GM G + A A Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMA 303 Query: 319 CLAMLVFTLGEIIVIPAEYMFIDLIAPEHLRGVYYGA-QNLSNLGAALGPVMVGFALVHL 377 M++ G I +PA + E +G G+ L++L + +GP++ Sbjct: 304 FPIMVLLASGGIG-MPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Query: 378 WP---------GAVFYLLVLSVILAGVFYGLGTR 402 GA YLL L + G++ G G R Sbjct: 363 ITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQR 396
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.8 bits (145), Expect = 3e-11 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 4/122 (3%) Query: 1039 HVLCVDNEDSILIGMNSLLSRWGCQVWTARNQAECEALLAKGMRPHLALVDYHLDDGETG 1098 +L D++ +I +N LSR G V N A +A G L + D + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NA 62 Query: 1099 TGLMGWLRARLGEPVPGVVISADGSKET-IALVHASGLDYLAKPVKPAALRALLNRHLSL 1157 L+ ++ + +P +V+SA + T I DYL KP L ++ R L+ Sbjct: 63 FDLLPRIKKARPD-LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1158 AQ 1159 + Sbjct: 122 PK 123
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.8 bits (93), Expect = 2e-05 Identities = 19/150 (12%), Positives = 52/150 (34%), Gaps = 8/150 (5%) Query: 25 QVQRRQGARQGEQALLEERLNAAQLAQAGLQAQLDASRDEVSDLSEANAVKQAQLAAQGR 84 +V R + + + + + +L +A+ ++ + V++++L Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD--- 239 Query: 85 ELELLQIDRDNARDAAHAWSLERANREAELRRLEAQTARLDAELREQQESHQQRLEDLQE 144 L + A+ A + ELR ++Q ++++E+ +E +Q + + Sbjct: 240 -FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 145 ARDTLRAQFADMATKIFDEREQRFAQTSQQ 174 Q T A+ ++ Sbjct: 299 EILDKLRQ----TTDNIGLLTLELAKNEER 324
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.009 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 12/66 (18%) Query: 16 NQKQVSQTNKAEKKQKRMEHKGQVEVDDSQQRMAKEAMAEKARRDQELNRQQQEKAEQKA 75 N KQ S+T + +Q E Q + +AKEA + + + N Q E A+ + Sbjct: 1043 NSKQESKT-VEKNEQDATETTAQ------NREVAKEA-----KSNVKANTQTNEVAQSGS 1090 Query: 76 RAAQVK 81 + + Sbjct: 1091 ETKETQ 1096
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.015 Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 347 ENMLRNAIRHSPAEGVVRLGGQREGSYWWLWLEDEGGGVAEEDLE 391 EN +++ I P G + L G ++ L +E+ G + E Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 3e-23 Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 23 THILAIEDDPVLGAYLQEELQRGGCQVTWCRNGLEGLETAGRQAFDVVLMDILLPGLDGL 82 IL +DD + L + L R G V N D+V+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 83 DALAQLR-RHSATPVIMMSALGAEADRISGFQRGADDYLPKPFSMAELQVRIEAILRRVA 141 D L +++ PV++MSA I ++GA DYLPKPF + EL I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE-- 121 Query: 142 LERRHQGPLEQA 153 +RR + + Sbjct: 122 PKRRPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 2e-16 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 9/146 (6%) Query: 667 RPKILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDG 726 IL DD+AA ++ L G +V +N + + DLV+ DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 727 RACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMK 786 +I+ LP++ ++A G DYL KP +L ++ + Sbjct: 63 FDLLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 787 WTGLSLGTPQQAQPELLTNGDELKVL 812 +L P++ +L + + L Sbjct: 118 ----ALAEPKRRPSKLEDDSQDGMPL 139
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.2 bits (122), Expect = 5e-10 Identities = 22/90 (24%), Positives = 39/90 (43%) Query: 23 KTARQGSEQRRQLILDAAMRIVVRDGVRGVRHRAVAAEAGVPLSATTYYFKDIEDLLTDT 82 + +Q +++ RQ ILD A+R+ + GV +A AGV A ++FKD DL ++ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 83 FAQYVERSAAYMAKLWANTEVVLRQLLAQG 112 + + A +L + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREI 92
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 29.0 bits (65), Expect = 0.023 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%) Query: 2 LAQVVETLDKLSGGL------ADCKDLLDMAVEENDENA 34 +VV L+K SG +D +DL D A + D+ A Sbjct: 260 AEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRA 298
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.9 bits (153), Expect = 4e-13 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 15/162 (9%) Query: 19 VLLVDDQAMIGEAVRRGLADEDNIDFHFCADPHQAVAQAMRIKPTVILQDLIMPGLDGLT 78 +L+ DD A I + + L+ D ++ +++ D++MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 79 LVREYRNNPVTQDIPIIVLSTKEDPLVKSAAFAAGANDYLVKLPDTIELVARIRYHSRSY 138 L+ + D+P++V+S + + A GA DYL K D EL+ I Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA---- 118 Query: 139 LTLLQRDEAYRALRVSQQQLL--DSNLMLQ------RLMNSD 172 L +R + L S M + RLM +D Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTD 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.4 bits (110), Expect = 1e-07 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 11/173 (6%) Query: 2 KIAIVNDMPLAVEALRRAVALEPAHQVVWVASNGAEAVQRCTEQLPDLILMDLIMPVMDG 61 I + +D L +A L A V + SN A + DL++ D++MP + Sbjct: 5 TILVADDDAAIRTVLNQA--LSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEATRRIMAETPCAIVIVTVDRKQNVHRVFEAMGHGALD-VVDTPALGAGDAREAAAPLL 120 + RI P V+V + +A GA D + L A Sbjct: 63 FDLLPRIKKARPDLPVLVMSA-QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 121 RKILNIGWLVGQQRAPAARSVAAPLREASQRRGLVAIGSSAGGPAALEVLLKG 173 K Q +A ++E + + L +++ G Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLM-------QTDLTLMITG 167
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 8e-16 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 641 RKRILVVDDSLTVRELQRKLLGNRGYDVAVAVDGMDGWNALRSEDFDLLITDIDMPRMDG 700 ILV DD +R + + L GYDV + + W + + D DL++TD+ MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 701 IELVTLVRRDQRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAV 756 +L+ +++ LPV+V+S ++ + + GA YL K F L+ + Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK-PFDLTELIGII 115
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.3 bits (84), Expect = 4e-05 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 29/122 (23%) Query: 3 KIAIIGATGRAGSQLLEEALRRGHRVLAI-----ARDPS------TLEGREGVTVKSLDA 51 K + GA G G + + L GH+V+ I D S L + G +D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 52 TDSAALQA--AVAGMDAVLSAAH-----FSTMEPHA-----------IIEPVKRAGVKRL 93 D + A + V + H +S PHA I+E + ++ L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 94 LV 95 L Sbjct: 122 LY 123
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 138 bits (350), Expect = 3e-38 Identities = 89/412 (21%), Positives = 172/412 (41%), Gaps = 25/412 (6%) Query: 13 VLTALMLAIFLGALDQTIVAVSLPAISAQFSDVG-LLAWVISGYMVAMTVAVPIYGKLGD 71 +L L + F L++ ++ VSLP I+ F+ WV + +M+ ++ +YGKL D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 72 LYGRRRMILTGISLFTLASIACAMAQDM-PQLVLARVLQGIGAGGMVSVSQAIIGDFVPP 130 G +R++L GI + S+ + L++AR +QG GA ++ ++ ++P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 131 RERGRYQGYFSSMYAAASVAGPVLGGWLTEYLSWRWVFWINLPLGLVALWAIRRALADMP 190 RG+ G S+ A GP +GG + Y+ W ++ I + + + ++ Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL---KK 191 Query: 191 VQRREAQVDYLGAMLLILGLGSLLLGITLVGQGHAWADPAVLALFGCALLGLALFIAHER 250 R + D G +L+ +G+ +L T L + +L +F+ H R Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISF-------LIVS---VLSFLIFVKHIR 241 Query: 251 RCPEPLLPLSLFGNR---VAVLCWAVIFFASFQSISLTMLMPLRYQGITGAGADSAALHL 307 + +P + L N + VLC +IF +S+ M ++ A S + Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI--I 299 Query: 308 LPLAMGLPMGAFTGGRMTSRTGRYKPQILAGALLMPVAIFAMALTPPQSALLSALCMLLT 367 P M + + + GG + R G + G + V+ + ++ + ++ Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLY-VLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFV 358 Query: 368 GIACGLQFPTSLVGT--QSAVASKDIGVATSTTNLFRSLGGAMGVACMSSLL 417 GL F +++ T S++ ++ G S N L G+A + LL Sbjct: 359 --LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 138 bits (348), Expect = 4e-43 Identities = 79/209 (37%), Positives = 121/209 (57%) Query: 1 MVRRTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQ 60 M R+TK+EAQETR I++ A R F ++GV+ T+L +IA+ AGVTRGAIYWHF +K++L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ALLDSLRETHDHLARASESEDELDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFT 120 + + L +++ DPL +R++L+ V V + R R + EI+ HKCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDVERAAVAMFAYVDGLIGRWLL 180 +M ++Q +++ L+ + I L + + LP +L RAA+ M Y+ GL+ WL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 LPDSVDLLGDVEKWVDTGLDMLRLSPALR 209 P S DL + +V L+M L P LR Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 9e-07 Identities = 37/227 (16%), Positives = 82/227 (36%), Gaps = 25/227 (11%) Query: 73 ILKRLFKEGS----EVKEGQQLY---QIDPAVYEATLANAKANLLATRSLAERYKQLIDE 125 L + + V E + Y + VY++ L ++ +L+ + + QL Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 126 QAVSKQEYDDANAKRLQAEASLKSAQIDLRYTKVLAPISGRI-GRSSFTEGALVSNGQTD 184 + + K L + + + + AP+S ++ TEG +V+ +T Sbjct: 299 EILDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET- 355 Query: 185 AMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLK-------KAGDNAASVQLVLEDGSL 237 M + + D + V ++ + + +K + G V+ + D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNA-IIKVEAFPYTRYGYLVGKVKNINLDAIE 414 Query: 238 FKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAG 284 ++ G + ++++E S + + L GM V A +K G Sbjct: 415 DQRLGLVFNVIISIEENCLSTGNKNIP------LSSGMAVTAEIKTG 455 Score = 42.9 bits (101), Expect = 1e-06 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%) Query: 61 RVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLAERYK 120 R E++P N I+ + + KEG V++G L ++ EA +++LL R RY+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 QLIDEQAVSKQEYDDANAKR--LQAEASLKSAQIDL 154 L ++K + L Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1319 bits (3414), Expect = 0.0 Identities = 668/1033 (64%), Positives = 826/1033 (79%), Gaps = 4/1033 (0%) Query: 1 MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60 M+ FFI RPIFAWV+A+++M+ GAL+IL+LP+ QYP+IAPPA++++ YPGA AQTVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120 V QVIEQ +NGIDNL Y+SS S+S GS+TIT TF+ GT+PD AQVQVQNKL LATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180 EVQQQGI V K+ ++L+V G VS++ T+DD+++Y+ SN++D +SR GVGD Q+FGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240 QYAMRIWLD LNK++LTPVDV + QN Q+++GQLGG PALPG QLNA+II +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTAEQFENILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300 + E+F + L+VN DGS VRL DVA+V LGGENY V A+ NGKPA+GL +KLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTAKALRETIKSLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360 DTAKA++ + L+PFFP G+K ++PYDTTP V SI V+ TL EA++LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N RAT+I T+ VPVVLLGTF ILAA G+SINTLTMF MVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480 E+ LPPKEAT++SM QIQGALVGIA+VLSAV +PMAFFGGSTG IYRQFSITIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGTILRNKVP 540 SVLVALI TPALCAT+LKP+ EHH KGGFFGWFN FD SVN Y SVG IL + Sbjct: 481 SVLVALILTPALCATLLKPVSA-EHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600 +LL YALIV GM+ LF R+P++FLPEEDQGV +Q PAG++ ERTQ V+DQ+ +Y LK Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERS-KENSVFALAQRAQQHFFTFRD 659 +E V SVFTVNGF+F+G+ Q++GMAF+ LKPW+ER+ ENS A+ RA+ RD Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 660 AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHAKLMEARNQFLAKAAQSKI-LSAVRPNG 718 V F PA++ELG ATGFD L D+ G+GH L +ARNQ L AAQ L +VRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 719 LNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSAR 778 L D Q++L +D E+A ALGV+++DIN T+S ALG +YVNDFIDRGRVKK+Y+Q + R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 779 MSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEA 838 M PED+ K YVR+ GEMVPFS+F W YGSP+L RYNG+ +MEI G APG S+G+A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 839 MAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIA 898 MA +E +A +LP+GIG+ WTGMSY+E+LSG+Q PAL A+S + VFLCLAALYESWSIP++ Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 899 VVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHE-QGRSL 957 V+LVVPLGI+G L+A +L NDVYF+VGLLTTIGL+AKNAILIVEFAK+L E +G+ + Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 958 YDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIF 1017 +A + A RMRLRPI+MTSLAFILGV+PL I++GAG+G+Q+A+G GV+GGM+SAT+LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1018 WVPLFFVAVSSLF 1030 +VP+FFV + F Sbjct: 1020 FVPVFFVVIRRCF 1032
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.4 bits (216), Expect = 2e-22 Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 14/204 (6%) Query: 4 VLITGCSSGIGRALADAFRDAGHHVWATARKPEDVEQL----SAAGYTARQ--LDVNDGE 57 ITG + GIG A+A G H+ A PE +E++ A A DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 58 AL----ARLAEELQTLDILINNAGYGAMGPLLDGGVDALRQQFETNVFAVVGVTRALFPL 113 A+ AR+ E+ +DIL+N AG G + + F N V +R++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 114 LRRSR-GLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAI 172 + R G +V +GS + AY +SKAA + L LELA + ++ V PG+ Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 173 ASQFASN---AQRQAEQVLAVDSA 193 + + + AEQV+ Sbjct: 191 ETDMQWSLWADENGAEQVIKGSLE 214
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 139 bits (351), Expect = 3e-39 Identities = 57/374 (15%), Positives = 107/374 (28%), Gaps = 83/374 (22%) Query: 55 VSADYTVVAPKVAGFIKQVLVEDNQQVTAGQLL---------------------ATIDAR 93 S + P +K+++V++ + V G +L A ++ Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 94 DYQAALDAA-------------------------------QAQLLVAQAQSADARATLER 122 YQ + + Q Q Q L++ Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 123 QDALIAQAEAAVKAAQAEAAFADHEVNRYSRLAEQGAGTVQNAQQARSAVDQARARLANA 182 + A A + + + ++ +S L + A + + +A L Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVY 271 Query: 183 QAARVAARKQV----------------DILTAQVASADGQLKRAEAGLEKAQLDLSYTRI 226 ++ ++ +IL ++ + L K + + I Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILD-KLRQTTDNIGLLTLELAKNEERQQASVI 330 Query: 227 TAPVDGMVGE-RALRVGAYVNPGARLLSVVPLQQAYVV-GNFQETQLTHVQPGQPVRISV 284 APV V + + G V L+ +VP V Q + + GQ I V Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390 Query: 285 DTFSGET---LQGHVQSIAPATGVTFAAVKPDNATGNFTKVVQRIPVKIVFDDGQPLLTR 341 + F L G V++I D G V+ I + + + Sbjct: 391 EAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--P 441 Query: 342 LRVGMSVEATIDTR 355 L GM+V A I T Sbjct: 442 LSSGMAVTAEIKTG 455
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 64.5 bits (157), Expect = 3e-13 Identities = 80/416 (19%), Positives = 156/416 (37%), Gaps = 31/416 (7%) Query: 33 LFGVLLAVLCAGLNESVTKISLADIRGAMGIGADEGAWLLAAYSAASVSAMAFAPWLATT 92 L + + + LNE V +SL DI W+ A+ A L+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 93 FSLRRFTMSAIGLFAVFGLLQPFAPNLHSLMLL-RVLQGFAAGALPPMLMSVALRFLPPG 151 ++R + I + ++ + SL+++ R +QG A A P ++M V R++P Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 152 IKVYGLACYALTATFGPNLGTPLAGLWTEYVGWQWAFWQIILPSLLAMVCVGWGLPQDPL 211 + G +G + G+ Y+ W + ++P + + L + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL---LIP--MITIITVPFLMKLLK 190 Query: 212 RLERFKQ-FDWRGVLLGLPAISCTVLGLSLGDRWGWFDSPLICWLLGGGLLLLVLFMYNE 270 + R K FD +G++L I +L + + LI +L ++F+ + Sbjct: 191 KEVRIKGHFDIKGIILMSVGIVFFMLFTTS-YSISF----LIVSVLS-----FLIFVKHI 240 Query: 271 WSEPLPFFQLRLLQRRNLSFALVTLAGVLIVLSGVGSIPSAYLAQIQGYRPAQTSPLMML 330 PF L + ++ + ++G S+ + + A+ +++ Sbjct: 241 RKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIF 300 Query: 331 VA-MPQLIALPLTAALCNIRAVDCRWVLGIGLAMLAVSCVGSSLL--TSEWIRGDFYPFY 387 M +I + L + R +VL IG+ L+VS + +S L T+ W F Sbjct: 301 PGTMSVIIFGYIGGILVDRRGP--LYVLNIGVTFLSVSFLTASFLLETTSW----FMTII 354 Query: 388 LLQVFGQPMAVLPLLMLS-TNGMTPQEGPFASSWFNTV----KGLAAVIAGGLLDV 438 ++ V G ++ ++ + QE S N +G I GGLL + Sbjct: 355 IVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 1e-09 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 130 AQADYQQALAELAAAELNLKRTHIVATVDGYVTNLNIH-KGDYARTGEAVMAVV-DENSF 187 + ELA E + + I A V V L +H +G T E +M +V ++++ Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 188 WVYGFFEETKLPHVKVGDQAELQMMS-----GERLKGHVESIAR 226 V + + + VG A +++ + L G V++I Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410 Score = 47.9 bits (114), Expect = 2e-08 Identities = 23/163 (14%), Positives = 58/163 (35%), Gaps = 19/163 (11%) Query: 2 KKFFSLIATLLVLVAAVAIGRQLWLHY---MTTP--WTRDGRVRADIINVAADVPGYVVD 56 + L+A ++ +A + T T GR + + V + Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKE----IKPIENSIVKE 109 Query: 57 VPVKDNQRVKKGDLLIQIDPEHYQLAVDQAKALVASRKATWEMRKVNAKRRADMDNLVIS 116 + VK+ + V+KGD+L+++ + + ++ + + + R R +++ L Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE-QTRYQILSRSIELNKLPEL 168 Query: 117 KENRD---------DASNIANSAQADYQQALAELAAAELNLKR 150 K + + + + + + + ELNL + Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.6 bits (69), Expect = 0.029 Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 168 FGCFLIMIIILAVLALIVVKALAESPWGMFTVMATIPIAMFMGIYMRYIRPGRIGEISVV 227 ++ I V+ + + AL ES +VM +P+ + + + + +V Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMV 928 Query: 228 GVVLLL 233 G++ + Sbjct: 929 GLLTTI 934
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.016 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 21/142 (14%) Query: 114 VLGAVMAASLIGFLITPVFSRIT-------KFFPPLVTGIVI-----TTIGLTLMPVAAR 161 + GA++ +++ ++ VF + + IV + L L P Sbjct: 438 IQGALVGIAMV---LSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA 494 Query: 162 WVMGGNSASPE-----FGSVANIGLAGLTFAIVLLLSKLGSATISRLSILLAMVVGTLIA 216 ++ SA F N + K+ +T L I +V G ++ Sbjct: 495 TLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVL 554 Query: 217 WA-LGMTDFSKVSEGPMFAFPT 237 + L + + +G Sbjct: 555 FLRLPSSFLPEEDQGVFLTMIQ 576
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 176 bits (448), Expect = 2e-60 Identities = 89/134 (66%), Positives = 108/134 (80%), Gaps = 1/134 (0%) Query: 1 MGVLNEFKAFAVKGNVVDMAVGIIIGAAFGKIVSSFVGDVIMPPLGLLIGGVDFSDLAIT 60 M ++ EF+ FA++GNVVD+AVG+IIGAAFGKIVSS V D+IMPPLGLLIGG+DF A+T Sbjct: 1 MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVT 60 Query: 61 LKAAEGDVPAVVLAYGKFIQTVIDFVIVAFAIFMGVKAINKLKREEAVAPTTPPVPSAEE 120 L+ A+GD+PAVV+ YG FIQ V DF+IVAFAIFM +K INKL R++ P P P+ EE Sbjct: 61 LRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKLNRKKE-EPAAAPAPTKEE 119 Query: 121 TLLTEIRDLLKTQN 134 LLTEIRDLLK QN Sbjct: 120 VLLTEIRDLLKEQN 133
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.024 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 12/127 (9%) Query: 49 VLVLNDSFGALAASLAGQLQVVSSGDSHLGHLALEKNLARNGLPFDSVPFVPASEHWQGP 108 VL+ + GA A +L Q ++ + + L +++ N LP +P P ++ Sbjct: 123 VLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEE 182 Query: 109 FDRVLVRVPKTLALLEEQLIRLQGQLAPGAQVIAGAMIKHLPRAAGDLMEKYIGPVQASL 168 V + +L++EQ Q Q + RA + I + Sbjct: 183 E------VLRLTSLIKEQFSTWQNQKYQKELNLDKK------RAERLTVLARINRYENLS 230 Query: 169 ALKKARL 175 ++K+RL Sbjct: 231 RVEKSRL 237
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 4e-15 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 1527 VMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDGFEV 1586 ++V DD +R V ++ L R G V + + D+++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1587 ATRIRRDARLKDLPIIMITSRTGQKHRDRAMAIGVNEYLGKP 1628 RI+ DLP+++++++ +A G +YL KP Sbjct: 66 LPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.6 bits (199), Expect = 4e-21 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 2 ARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNGF 61 A +L+ DD L + L + GY V SN A D V+ D+VMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQLSK-DPDTSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEEALIAKLKEVLG 120 ++ K PD +PV+V++ ++ I A+ +GA D+L KP + LI + L Sbjct: 64 DLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 A 121 Sbjct: 121 E 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.0 bits (174), Expect = 1e-17 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 6 KVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQ 65 ++V DD IR L AG +V S+ I ++ DV+MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 TCAVIKH-NSAFKDTPVILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIR 119 ++ A D PV+++S+++ + G+ +L KPF EL+ I Sbjct: 65 ---LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 60.8 bits (147), Expect = 5e-13 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 12/171 (7%) Query: 106 ITPPPAARP---EVVPPPPPKKSAVVTTAPKPHKVEPKPKESKAQPKPATPTPDFDSSQL 162 + PP A +P VV P P + P +E + K +PKP Sbjct: 60 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVE------- 112 Query: 163 SSQIASLEAELSNEQQMYAKRPRIHRLNAASTMRDKGAWYKEEWRKKVERVGNLNYPDEA 222 + E P + A+ K + + R YP A Sbjct: 113 QPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN-QPQYPARA 171 Query: 223 RRQQIYGNLRMMVSINRDGSLYEVLVLESSGQPVLDQAAQRIVRLAAPFAP 273 + +I G +++ + DG + V +L + + ++ + +R + P Sbjct: 172 QALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR-RWRYEP 221
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 37/165 (22%), Positives = 53/165 (32%), Gaps = 48/165 (29%) Query: 198 LAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDEHEALEVAAIQSVSGKAP 257 R L L+ TG GTGK L+A A+ + Sbjct: 147 QEIYRVLARLMQTDLTLMITGESGTGKELVAR------------------ALHDYGKRR- 187 Query: 258 LNSWPQRPFRHPHHSASGP------ALVG-------GGSRPQPGEITLAHHGVLFLDEL- 303 PF + A+ P L G G G A G LFLDE+ Sbjct: 188 -----NGPF-VAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 304 ---PEFERRVLEVLREPLESGEIVIARARDKVRFPARFQLVAAMN 345 + + R+L VL++ GE + + ++VAA N Sbjct: 242 DMPMDAQTRLLRVLQQ----GE--YTTVGGRTPIRSDVRIVAATN 280
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 2e-24 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 1 MNRG-VCIVDDDASVRKSLANLLRSAGFETLSFSAGHAFLASPLAGEAGCVLLDLKMPGM 59 M + + DDDA++R L L AG++ S AG+ V+ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 SGLEVQRELAQRGRRLPVICMSAHWDDGSVRAAMGLGALACLGKPFSEEVLLKVVEEALA 119 + ++ + + LPV+ MSA + A GA L KPF L+ ++ ALA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 3e-22 Identities = 28/129 (21%), Positives = 56/129 (43%) Query: 127 VLVVDDDPSVRTALGRLLRSQDIPHHLFASAEALFEAHLETPCACLLLDMHLPGTSGLEV 186 +LV DDD ++RT L + L + ++A L+ ++ D+ +P + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 187 QDALCRLALPWPIVFMTGFGTIPMTVQAMRAGAVEFLTKPFDEDQLLTLLQAVRARAVAE 246 + + P++ M+ T ++A GA ++L KPFD +L+ ++ A Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 247 GRKWLQARQ 255 K Q Sbjct: 126 PSKLEDDSQ 134
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 2e-04 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 64/281 (22%) Query: 1412 LEILASQAAVSLQTAKFYTRLAEENQIRTQMEAELRRSRAE-LARSAHLQAMNELSASIA 1470 L I+ + V+ + Y + +AE+ + + +A+ A L A L A I Sbjct: 118 LSIIFNVVVVTFMWSLLYFGWHFFKNYK---QAEIDQWKMASMAQEAQLMA---LKAQI- 170 Query: 1471 HEISQP--LLGIASNAAASLRWLKRPNPDLEEAIAGLEDIRNDSERAGNIVRAL----RS 1524 P + NA ++R L I D +A ++ +L R Sbjct: 171 ----NPHFMF----NALNNIRAL----------------ILEDPTKAREMLTSLSELMRY 206 Query: 1525 LAKQSPMQLKAVKLDEL--IREVVRLTSA---DAAKGKVDVQTQLKAGVCVTADPVQLQQ 1579 + S + ++ DEL + ++L S D + + + + V P+ +Q Sbjct: 207 SLRYSNARQVSLA-DELTVVDSYLQLASIQFEDRLQFENQINPAIMD---VQVPPMLVQT 262 Query: 1580 LVFNLITNALEALAGYRCDGVLKITSAVVQDEVEICVEDNGPGIAADERERVFDAFHTTK 1639 LV N I + + L G + + V + VE+ G + +E Sbjct: 263 LVENGIKHGIAQLPQ---GGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------- 309 Query: 1640 TGGMGMGLA-ICSSVAQAHGGQLQ-ALVSQLGGCRIRFSLP 1678 G GL + + +G + Q L + G +P Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 41.2 bits (96), Expect = 1e-06 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 8 RLNKDDAVVLLVDHQTGLISLVQDFSP--NEFKNNVLALGDLAKFFGLPTILTTS-FEQG 64 + + AV+L+ D Q + + E N+ L + G+P + T Q Sbjct: 25 VPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQN 84 Query: 65 PNGPLV------PELKEMFPDAPYIAR----PGQI-------NAWDNEDFVKAIKATGRK 107 P+ + P L + I + +A+ + ++ ++ GR Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRD 144 Query: 108 QLIIAGVVTDVCVAFPTLSALAEGFEVFVVTDASGTFNE 146 QLII G+ + A E + F V DA F+ Sbjct: 145 QLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL 183
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 38.1 bits (88), Expect = 1e-05 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 26/166 (15%) Query: 13 DAAVLLV-DHQAGLLSLVRDIEP--DKFKNNVLALADLAKFFNLPTILTTS-FEQGPNGP 68 + AVLL+ D Q + + N+ L + +P + T Q P+ Sbjct: 29 NRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDR 88 Query: 69 LV------PELKALFPDAPYIAR----PGQI-------NAWDNEDFVKAVKATGKKQLII 111 + P L + + I + +A+ + ++ ++ G+ QLII Sbjct: 89 ALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLII 148 Query: 112 AGVVTEVCVAFPALSALEEEFEVFVVTDASGTFNEMTRDAAHDRMS 157 G+ + A A E+ + F V DA F+ +M+ Sbjct: 149 TGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL-----EKHQMA 189
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.9 bits (88), Expect = 8e-05 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 6/157 (3%) Query: 44 TLSASPLHVALIQVAGSLPMFFLALPAGAAADIVDKRRYLLLVQLWMSCVAVVLAALTLL 103 + P + A L G +D + +R LLL + ++C V+ + Sbjct: 43 DFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR-LLLFGIIINCFGSVIGFV--- 98 Query: 104 GMMNVTLLLVLTLALGIGTALMMPAWSA-LTPELVGKEDLADAVALSSVGINVSRAIGPA 162 G +LL++ G G A PA + + KE+ A L + + +GPA Sbjct: 99 GHSFFSLLIMARFIQGAGAA-AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA 157 Query: 163 LAGVVVSMVGPWLTFALNAISFAGVILVLFLWKREVK 199 + G++ + + I+ V ++ L K+EV+ Sbjct: 158 IGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194 Score = 29.1 bits (65), Expect = 0.046 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 275 GATLLPRLRERISRDRLVLLASLLYALFLLALALVRNFYALL-PAMLLSGAAWIAVLSNL 333 G + +L +++ RL+L ++ + + +F++LL A + GA A + + Sbjct: 65 GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALV 124 Query: 334 QVAAQTSVPAWVRARALSVYILIFFGAMACGGLLWGTLASHATITFSLLL 383 V +P R +A + I G + G +A + ++ LL+ Sbjct: 125 MVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.1 bits (68), Expect = 0.029 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 37 GSAHASSQGGSMTADLILFNGKLHTVDREKPTATAVAIKDGRFIAVGS-------DAEAM 89 G + + +GG++ D ++ N + +D + +KDGR A+G + Sbjct: 57 GQSQVTREGGAV--DTVITNALI--LDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTI 112 Query: 90 AHKGAATQIIDLKQRTVIPGLNDSHLHLI 118 G T++I + + V G DSH+H I Sbjct: 113 I-VGPGTEVIAGEGKIVTAGGMDSHIHFI 140
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 36.9 bits (85), Expect = 3e-05 Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 90 NAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPALSALEEEFDVFVVTDASGTFN 145 +A+ + ++ ++ G+ QLII G+ + A A E+ F V DA F+ Sbjct: 127 SAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFS 182
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 28.6 bits (64), Expect = 0.043 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 40 LVIFLLFSAVLMAAGMSPLQPPPWPDDLSRNLMATVLAIGWWL 82 L+I L+ ++VLMA GM + PP L LM VL GW L Sbjct: 194 LIIDLVIASVLMALGMMMV--PPATIALPFKLMLFVLVDGWQL 234
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.6 bits (243), Expect = 1e-25 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 1 MVGRNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGT 60 M G IL+ DD+A IR ++ AL AGYD N+ I DL++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 + +L R+K + D+P+++++A+ I+ E GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 121 LRRT 124 L Sbjct: 119 LAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.026 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 25/99 (25%) Query: 329 LVFNAVKY----TQDEGSIRIRWWADAQGAHLSVQDSGVGIDAKHLPRLTERFYRVDSSR 384 LV N +K+ G I ++ D L V+++G + K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKE------------ 309 Query: 385 ASNTGGTGLGLAIVKHVLMRHRGK---LEISSVPGHGST 420 TG GL V+ L G +++S G + Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.020 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 7/42 (16%) Query: 211 PSGNFVRILHPDGTMGVYLHLMRGSVVVAEGQRVRQGQMLAK 252 SG I + + ++ V EG+ VR+G +L K Sbjct: 92 HSGRSKEIKPIEN--SIVKEII-----VKEGESVRKGDVLLK 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.7 bits (207), Expect = 3e-20 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 1 MSKVNVLVVDDAPFIRDLVRKCLRNAFPGMAIDDAVNGRKAMAMLGKEAFDLVLCDWEMP 60 M+ +LV DD IR ++ + L A G + N + DLV+ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMSGLELLTWCRQQPALKNLQFIMVTSRGDKENVIQAIQAGVSDFVGKPFTNEQLLTKVK 120 + + +LL ++ A +L ++++++ I+A + G D++ KPF +L+ + Sbjct: 59 DENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 121 KALT 124 +AL Sbjct: 117 RALA 120
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.3 bits (115), Expect = 3e-08 Identities = 71/388 (18%), Positives = 129/388 (33%), Gaps = 55/388 (14%) Query: 45 TFFDGYTVIAIAYAMPVLAKEWSLSG---AQIGMILSAGYLGQLFGALIFGWLAEKLGRM 101 D + I +P L ++ S A G++L+ L Q A + G L+++ GR Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRR 73 Query: 102 KVLTFTILLFVSMDVACLFASSAAMMIAFRFIQGIGTGGEVPVASAYINELIGSKKRGKF 161 VL ++ A ++ R + GI TG VA AYI ++ +R + Sbjct: 74 PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARH 132 Query: 162 FLLYEVMFLLGLVGAGIIGYFLVPIYGWQAMFAVGIVPAMLLIPLRFFLFESPRWLASKG 221 F F G+V ++G + FA + + + F L ES Sbjct: 133 FGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH------- 185 Query: 222 RLDEADRIVTRLENSALKAGKTLQPPVEVPQIQTDKNGLGWKELFKGMYFKRSLVIWAMW 281 K + P+ + W + + A++ Sbjct: 186 --------------------KGERRPLRREALNP-LASFRWARGMTVVAA-----LMAVF 219 Query: 282 FGAYMVANGLITWLPTLYRQHFNLPLETSLAYGFMTSAGGVVAAVICALLIDKV----GR 337 F +V F+ + G +A G++ ++ A++ V G Sbjct: 220 FIMQLVGQVPAALWVIFGEDRFHW---DATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 338 RRWYMGALFLAAIPLAILATTGAS----APLKILALAGLGYALVQTVTFSLYLYSAELYP 393 RR M + +LA + +LA G+G +Q + S ++ Sbjct: 277 RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQA------MLSRQVDE 330 Query: 394 TRLRALGTGVGSAWLRMGSALGPIIVGF 421 R L G +A + S +GP++ Sbjct: 331 ERQGQLQ-GSLAALTSLTSIVGPLLFTA 357 Score = 30.6 bits (69), Expect = 0.012 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 9/158 (5%) Query: 10 LLPDKVKSQANISARLERLPITKQVFWARNIIG-AATFFDGYTVIAIAYAMPVL-----A 63 LLP+ K + R E L WAR + AA + + + L Sbjct: 180 LLPESHKGERR-PLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGE 238 Query: 64 KEWSLSGAQIGMILSA-GYLGQLFGALIFGWLAEKLGRMKVLTFTILLFVSMDVACLFAS 122 + IG+ L+A G L L A+I G +A +LG + L ++ + + FA+ Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT 298 Query: 123 SAAMMIAFRFIQGIGTGGEVPVASAYINELIGSKKRGK 160 M + G G +P A ++ + +++G+ Sbjct: 299 RGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQ 335 Score = 29.0 bits (65), Expect = 0.036 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 8/165 (4%) Query: 295 LPTLYRQHFNLPLETSLAYGFMTSAGG---VVAAVICALLIDKVGRRRWYMGALFLAAIP 351 LP L R + + YG + + A + L D+ GRR + +L AA+ Sbjct: 28 LPGLLRD-LVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 352 LAILATTGASAPLKILALAGLGYALVQTVTFSLYLYSAELYPTRLRALGTGVGSAWLRMG 411 AI+AT L +L + + + Y A++ RA G SA G Sbjct: 87 YAIMATAPF---LWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFG 143 Query: 412 SALGPIIVGFTVSGAGVQYVFGTFAVVLLITAIITALFAIETKGR 456 GP++ G + G F A + + + E+ Sbjct: 144 MVAGPVLGGL-MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKG 187
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.3 bits (58), Expect = 0.005 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 1 MILNYTASTVSVLLMAFSSS--ALSEAKIRDLALNSIRPHLSSIEG 44 I +S+ +++ F S ++ I D ++++ LS + G Sbjct: 126 GISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNG 171
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.4 bits (232), Expect = 4e-24 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 3 SSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGED 62 + I + DD IR ++ Q L++ GY + + ++ L + DL++ DV+MP E+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLSLCRHIRSR-SNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRR 121 L I+ + PVL +SA+ + I E G DYL KPF+ EL+ + L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 28/104 (26%) Query: 330 LIENAVRYG-------ECADVRVYSADKHVHISVTDRGNGIPDSELEAVFTPFYRLEHSR 382 L+EN +++G ++ + V + V + G+ + E Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 383 NRNTGGVGLGLSIVRS-IARQHGGE--ITLTNHNGGLEAIISLP 423 G GL VR + +G E I L+ G + A++ +P Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348