>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 27.7 bits (61), Expect = 0.045 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 203 WDYIYEPEAKELLDQLMVRYIESQVYQGVVENNACEQAARMVA-MKNATDNATDMIHKL 260 I EP + E LD + E + + ++ + +V+ M TDN+ D I Sbjct: 165 KVTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMVKGTDNSNDAIKSA 223
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 28.9 bits (64), Expect = 0.018 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 60 VHEYGPEIAKRLR-PHFRQTCASWRLDETLVKIKGHWYYLYRAIDKYGHTLDWMLSRQQN 118 +H G A RL P A W ++E++ H YY Y A + G +D + Sbjct: 168 LHLLGKTAAARLSDPQAASHTAQWLVEESVTPAGEHIYYSYLAEN--GDNVDLNGNEAGR 225 Query: 119 AKAALRFFKK 128 ++A+R+ K Sbjct: 226 DRSAMRYLSK 235
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 89.1 bits (221), Expect = 2e-21 Identities = 67/388 (17%), Positives = 141/388 (36%), Gaps = 25/388 (6%) Query: 30 KSTFSLASLFGLRMLGLFMILPIFALYANQLHGATTLW--MGLTLGVYGATSCLFQLIFG 87 + + S L +G+ +I+P+ L + + G+ L +Y + G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 88 WASDHFGRKKIIALGLLIFAIGSLIAGLSDSIYGVFIGRALQG-AGAIGSATLALIADLT 146 SD FGR+ ++ + L A+ I + ++ ++IGR + G GA G+ A IAD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 147 KDKHRTKAMATVGMTIGFSFVIAMVLGPLLVGHIGLSGLFYLTGALALIAIIVLYKVVPS 206 R + + GF V VLG L+ G F+ AL + + ++P Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 207 PKRSIIHEGNTARWSQFKTVMTSPQLLNLDLGIFTLHAVLTASFMFIPLDML-------- 258 + E R + G+ + A++ F+ + + Sbjct: 184 SHKG---ERRPLRREALNPL----ASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 259 --HQLSLDAHEQWMVYLPVFIVSVIF-MVPFVIIAEKKRHMKGVLLGMIALMFISQLGVW 315 + DA + I+ + + +A + + ++LGMIA L + Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF 296 Query: 316 LFDSNLPGIIISLMLFFTAFTVLEALLPSWISKVSPVAAKGTAMGIYSSSQYLGAFIGGS 375 + +M+ + + L + +S+ +G G ++ L + +G Sbjct: 297 ATRGWM---AFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 376 IAGLLLSWHNSTALMIIILVALAVWWIL 403 + + + +T + A++ + Sbjct: 354 LFTAIYAASITTWNGWAWIAGAALYLLC 381
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.4 bits (247), Expect = 4e-27 Identities = 68/232 (29%), Positives = 101/232 (43%), Gaps = 16/232 (6%) Query: 4 ILITGATSGFGRATAELFADKGWSLILTGRRTQYLNNLYS--KLHSKTAIHIITLDVRDT 61 ITGA G G A A A +G + + L + S K ++ A DVRD+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHA-EAFPADVRDS 69 Query: 62 DQVFQTLSELPPPFKEIDVLINNAGLALGLETADQANLSDWHQMIETNITGLVNVTRAIL 121 + + + + ID+L+N AG+ L + +W N TG+ N +R++ Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 122 PQMKTANRGYIINIGSIAANTPYIGGNVYGATKAFVDQFTKNLRTDLLGTKIRATTIAPG 181 M G I+ +GS A P Y ++KA FTK L +L IR ++PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 182 LAETEFSIVRFKGDKNRAEQVYKD----------LKPLA-AEDIANTIDWLV 222 ET+ + D+N AEQV K LK LA DIA+ + +LV Sbjct: 189 STETDMQWSLWA-DENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 151 bits (384), Expect = 2e-45 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 45/342 (13%) Query: 1 MKQLLVTGGAGFIGCNFVRYMLKTYNHVNIINVDKLT--YAGSLNNLKN-LPDESRHIFV 57 MK LVTG AGFIG + + +L+ + V + +D L Y SL + L + F Sbjct: 1 MK-YLVTGAAGFIGFHVSKRLLEAGHQV--VGIDNLNDYYDVSLKQARLELLAQPGFQFH 57 Query: 58 QGDICDRLFIDQLLREHNIDTIVHFAAESHVDNSIKNPKLFIETNINGTFTLLEAARQFW 117 + D+ DR + L + + + V S++NP + ++N+ G +LE R Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 118 LEEKQWLNKGDCRFHHVSTDEVYGTLSKGAPAFTETTAYAPNSPYSASKAGSDHLVRAYF 177 ++ + S+ VYG L++ P T+ + P S Y+A+K ++ + Y Sbjct: 118 IQ----------HLLYASSSSVYG-LNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS 166 Query: 178 HTYGLPVTISNCSNNYGPYQHREKLIPTVIHLCLAEKKIPIYGNGSNIRDWLYVEDHCSV 237 H YGLP T YGP+ + + L K I +Y G RD+ Y++D Sbjct: 167 HLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEA 226 Query: 238 IDKILHNGRL------------------GEVYNIGANNEVDNLTLVKQVCQILDKKQPRK 279 I ++ VYNIG ++ V+ + ++ + L + + Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 280 NGSSYQELITFVTDRAGHDWRYAIDNRKIKNELNWQPVYSLQ 321 + + G + D + + + + P +++ Sbjct: 287 ----------MLPLQPGDVLETSADTKALYEVIGFTPETTVK 318
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 42.9 bits (101), Expect = 5e-08 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Query: 8 GTFDLFHYGHLRILERARALGDKLIVGVSSDALNYNKKQCYPITPQEQRLSIV 60 G+FD +GHL I+ER L D++ V V N NK+ P+ ++RL + Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAV---LRNPNKQ---PMFSVQERLEQI 53
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 27.9 bits (62), Expect = 0.017 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%) Query: 68 VTGEENASI-SIDY-------PDTVTLAGPASSSLTVDIQTNDENETLNGSGQLTKSFSG 119 VTG+E A + I Y P +T + SL + I+ ++ +G + Sbjct: 385 VTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEGIPTISRT 444 Query: 120 EVTVNATTAAGD 131 V A G Sbjct: 445 VVDTVARVGHGQ 456
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 27.6 bits (61), Expect = 0.045 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 10/80 (12%) Query: 130 IESADTAGFK---TIYADNNNSDTTNGTHYIQQLEEIIAERTIKPYYKQAEENL---AIA 183 IE + FK + N D + ++ +++ Y E IA Sbjct: 179 IERELPSKFKDSVNLVLQLRNPDFST----AVRVADVVNAFARARYGDPIAEPRDSQEIA 234 Query: 184 IRKRELEHKIAFLTIIEKIK 203 ++K + + IE + Sbjct: 235 VQKPRVADLTRLMAEIENLT 254
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 29.1 bits (65), Expect = 0.019 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%) Query: 255 HIAAENWQPSVGVQFNQYQSQVMQAVFEFSMSEKSDLKALISQLAKYEAE------FLSS 308 HI ++W+P + + QV ++E ++ + S + E F S Sbjct: 39 HIFQQDWEPKLSFDLSTEAKQVGDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTIS 98 Query: 309 SKIKENIPEFNEAICPRIL 327 + + + CP +L Sbjct: 99 GLEEMQMAHCLTSQCPNML 117
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 26.5 bits (58), Expect = 0.043 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 87 QAPTKPAAEKAKTKSKPNSKVKAREKRQEIKAKAEKEEQARKKAKYFKKVTQPRAPRNNQ 146 + P + K K KP K K +K QE + K ++P +P N Sbjct: 80 EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVK-----------PVESRPASPFENT 128 Query: 147 N 147 Sbjct: 129 A 129
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.3 bits (76), Expect = 0.003 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 18/82 (21%) Query: 189 VLMVGPPGTGKTLLAKAI---AGEAKVPFFS-----ISGSDFVEMFVGV------GASRV 234 +++ G GTGK L+A+A+ PF + I G GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 235 RD-MFDQAKKRAPCIIFIDEID 255 F+QA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.3 bits (84), Expect = 4e-04 Identities = 46/263 (17%), Positives = 98/263 (37%), Gaps = 23/263 (8%) Query: 45 EVPAPFAGTVKAIKVKEGSKVSEGSLIVQMEGSD-----DVVESATVPAPVAAPTAVVAP 99 E+ VK I VKEG V +G +++++ +S+ + A + + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 100 TGPIEVRVPDIG--------NYSGVDVIEINVAVGDQVSE---EDALITLETDKATMEVP 148 ++P++ N S +V+ + + +Q S + L DK E Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 149 SPVAGIVKEIKVAEGSQVSEGDL-VLIVEGAGGTSAVAHPP---ATAQQEVTTISSAVPM 204 + +A I + ++ + D L+ + A AV A E+ S + Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQ 277 Query: 205 AAVASASVQEVHVPDIGNYSGVDVIEINVAVGDCINE-EDPLITLETDKATMEVPSPVAG 263 S +E + + ++++ D I L E + + +PV+ Sbjct: 278 IESEILSAKEEYQLVTQLFKN-EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSV 336 Query: 264 VVKEIKV-AEGSQVSEGDLIVLV 285 V+++KV EG V+ + ++++ Sbjct: 337 KVQQLKVHTEGGVVTTAETLMVI 359 Score = 35.6 bits (82), Expect = 6e-04 Identities = 15/49 (30%), Positives = 27/49 (55%) Query: 256 EVPSPVAGVVKEIKVAEGSQVSEGDLIVLVESPGASSVVVSSVASQGAA 304 E+ +VKEI V EG V +GD+++ + + GA + + + +S A Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 172 bits (438), Expect = 4e-54 Identities = 89/249 (35%), Positives = 134/249 (53%), Gaps = 17/249 (6%) Query: 82 NNSLGIIFYQPNYVLPYYYTGSPYQAIYNGQTPDNQKVMSSEFKAQLSLMVPLWKDMFGN 141 +N + Y NY++ + +AI + +N + E K QLSL PLW+ + G Sbjct: 47 DNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENAR--KDEVKFQLSLAFPLWRGILG- 103 Query: 142 PDYSLNVGYTQLSYWQF--YAKSQYFRETNYEPELFV---TDHFHRNW---QISYGVVHQ 193 P+ L YTQ S+WQ +S FRETNYEP+LF+ TD+ W + G H Sbjct: 104 PNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGYNHD 163 Query: 194 SNGRGGSLERSWNRAYLNLEASGEHWLVSIKPWVLIFKPDSSDLHNPDIAHYLGHERIMF 253 SNGR RSWNR Y L A +WLV +KPW ++ ++ D NPDI Y+G+ ++ Sbjct: 164 SNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVV--GNTDD--NPDITKYMGYYQLKI 219 Query: 254 AYVFNNKMQASIALTNIESGMKRGAVELDYSFPLTKHINGFVQYFNGYGQSLIEYDHRTQ 313 Y + + ++ N +G G EL S+P+TKH+ + Q ++GYG+SLI+Y+ Sbjct: 220 GYHLGDAVLSAKGQYNWNTG--YGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQT 277 Query: 314 SVGIGIALS 322 VG+G+ L+ Sbjct: 278 RVGVGVMLN 286
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.005 Identities = 7/30 (23%), Positives = 17/30 (56%) Query: 125 IEADKAGVVKQILLSDGDIVEFDQPLVIIE 154 I+ + +VK+I++ +G+ V L+ + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLT 128
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.010 Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 1/133 (0%) Query: 17 LCLFVIAMGINRFSYGPIIPFLINEHWVTSSQAGYIGSLNFLGYFIGAYIAHKLTYFIQL 76 LC+ +N +P + N+ + ++ + L + IG + KL+ + + Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 77 NKIILYMLAFSVLASTLCTFNFGYI-WLGLCRFILGIVSGTIMVLTPTIILHRIAHEKKG 135 +++L+ + + S + + L + RFI G + L ++ I E +G Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 136 LVSGIMFAGIGLG 148 G++ + + +G Sbjct: 139 KAFGLIGSIVAMG 151
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.9 bits (80), Expect = 5e-05 Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 80 IMPELQGQGYGYYLLDAIIKEVMGQGANDVFLEVRESNLAALKLYNGYGF 129 + + + +G G LL I+ + LE ++ N++A Y + F Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 211 bits (539), Expect = 3e-63 Identities = 123/462 (26%), Positives = 206/462 (44%), Gaps = 49/462 (10%) Query: 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGTV-KGRKASRHATSDWMELEKQRGISV 67 K +++H DAGKTTLTE LL GAI G+V KG +D LE+QRGI++ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG-----TTRTDNTLLERQRGITI 56 Query: 68 TTSVMQFPYHERIINLLDTPGHEDFSEDTYRTLTAVDSALMVVDAAKGVEARTLKLWEVC 127 T + F + +N++DTPGH DF + YR+L+ +D A++++ A GV+A+T L+ Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 128 QLRKTAAMTFVNKLDREARDPVEVLDDIETSLGIFCAPITWPIGMGKNFKGIYHLYEDKV 187 + + F+NK+D+ D V DI+ L KV Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ------------------KV 158 Query: 188 YLYSAGKNQQVQDAEVIVGLDNPVLDDKL--GMMASELRDELELVRGASHEFDNVAYLAG 245 LY ++E + +D L M+ + + LEL + S F N Sbjct: 159 ELYPNMCVTNFTESEQWDTVIE--GNDDLLEKYMSGKSLEALELEQEESIRFHN-----C 211 Query: 246 ELTPVFFGSAINNFGIRELLNYFAEYAPAPQVRKTHERTVAPTEDKLSGFVFKIQANMDP 305 L PV+ GSA NN GI L+ + TH + +L G VFKI+ Sbjct: 212 SLFPVYHGSAKNNIGIDNLIEVITNKFYSS----THR-----GQSELCGKVFKIE--YSE 260 Query: 306 AHRDRIAFMRVCSGQYTKGMKLKHVRTGKTVQIANAMTFMAGDRSQAEEAYPGDILGLHN 365 R R+A++R+ SG ++ K ++I T + G+ + ++AY G+I+ L N Sbjct: 261 K-RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQN 318 Query: 366 HGTIQIGDAFTQGEDLKFVGIPNFA-PELFRLVRLRDPLKSKALQKGLIQLSEEGAT-QV 423 +++ + L P L V P + + L L+++S+ + Sbjct: 319 EF-LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRY 377 Query: 424 FRPLNSNDLILGAVGVLQFDVVAHRLKSEYNVECVYSNISIA 465 + ++++IL +G +Q +V L+ +Y+VE ++ Sbjct: 378 YVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVI 419
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.031 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 357 GQALNSANAAVTADPYDETAIVPSSTQTQTQTQTQTIAKITTETPKIKQQSVIKKKEPEK 416 + A + V A+ S +TQT + K K ++ ++ P+ Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 417 AQALKINQDKAQ-VKPAAKPSHVKVAAPVEKTSSVEKVVVKAQQIKRQQTNITQKTPKVN 475 + Q++++ V+P A+P A + T +++ + + T + P Sbjct: 1126 TSQVSPKQEQSETVQPQAEP-----ARENDPTVNIK------EPQSQTNTTADTEQPAKE 1174 Query: 476 TPSVVHHALKSSKTS 490 T S V + S T Sbjct: 1175 TSSNVEQPVTESTTV 1189
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 1e-05 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 22/197 (11%) Query: 119 QSEVQAEQTPNEAQQTVQLERRTVGYEQQAQTAEVRRSEAQEQQRQVVSRRKAADAGKVA 178 +E AE + E ++T E +A E Q K A + A Sbjct: 1036 TTETVAENSKQE-----------------SKTVEKNEQDATETTAQNREVAKEAKSNVKA 1078 Query: 179 ESQALREQQSFIDNIRAQRGQANSLDDQKLQAR-RVEAG----VQEHAAELRVASRQQSA 233 +Q QS + Q + + + + +VE V + +++ Q Sbjct: 1079 NTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138 Query: 234 EIDQLATARQRNAQVADQQAQEQGQMVNSEVSRSEQQSSAVSSDHDRKQGQDGSHAIVEQ 293 Q AR+ + V ++ Q Q +++ SS V + +++VE Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 294 RRQESPDALTRRANATT 310 +P N+ + Sbjct: 1199 PENTTPATTQPTVNSES 1215
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 37.9 bits (88), Expect = 6e-05 Identities = 74/419 (17%), Positives = 158/419 (37%), Gaps = 44/419 (10%) Query: 36 VMIPELMHYFNVGATSVGTFAGFYFYAYTPMQLIVGPLFDRFRAHQLLTLAVIACALGTI 95 V +P++ + FN S + ++ + G L D+ +LL +I G++ Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 96 LTGIAPTDHITIAYAGRFLQGFGSAFAFVGILKLGATILPHNRLALIAGLVTCLGFVGAM 155 + + + ++ RF+QG G+A ++ + A +P GL+ + +G Sbjct: 95 IGFVGHS-FFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEG 153 Query: 156 AGQNSLAALVTHFNWQ-----PVLITIGLF-------------------GFILAPIFF-F 190 G + + +W P++ I + G IL + F Sbjct: 154 VGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 191 FVHNPHSTPTDHTSQQMSSKDIFQGFLLTIKQPYL---------WLVGLAGGALFMPNSV 241 F+ S + S IF + + P++ +++G+ G + +V Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIF-GTV 272 Query: 242 FASLWGIPFLTQT-HHLSTAHATFATSLIFLGW---AIGSPLQGWLSDRLRTARLQLIFV 297 + +P++ + H LST A + +IF G I + G L DR R L Sbjct: 273 AGFVSMVPYMMKDVHQLST--AEIGSVIIFPGTMSVIIFGYIGGILVDR-RGPLYVLNIG 329 Query: 298 NILIAATIIYLVIAIPGLNYTLLCILLLAFGIFASAEIAVFPLAIEHMPTQYSGTAIAFV 357 ++ + + + ++ + I++ G + + + + + Q +G ++ + Sbjct: 330 VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLL 389 Query: 358 NFLTMLGGLTMQRGIGEILDLEW-DGTLSHGIRVYSSTVYSYALYTLPLILLIAAVCVI 415 NF + L T +G +L + D L S+ +YS L I++I+ + + Sbjct: 390 NFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLVTL 448
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 26.0 bits (57), Expect = 0.016 Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 5/56 (8%) Query: 14 EKHSDSYRIHLEEDLFGQWWLTRVKTINGKKEIKKDACENYQAGIKRIGHIKYHYE 69 Y QWW + K + ++ +K+I K+ Sbjct: 659 VYFKKIY-----FSFLDQWWTEYYSQYFELICMAKQSILAQESLVKQIVQNKFTDL 709
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (265), Expect = 1e-29 Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 2/191 (1%) Query: 5 LDGKVAIITGAASGLGLSIAEKYARSGANVVIADLNPDQAREVAARIAKKNKVTAIGIAM 64 ++GK+A ITGAA G+G ++A A GA++ D NP++ +V + + + + A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR-HAEAFPA 64 Query: 65 DVTSEEQVNEGVQKIADDLGTVDILVSNAGIQTIAPIVEFDYEDWKRLLDIHINGTFLTT 124 DV ++E +I ++G +DILV+ AG+ I E+W+ ++ G F + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 125 KACMQQMIRSGRGGSIIIMGSIHSVEASMNKSAYVTAKHGLLGFTRALAKEGAIHNIRAN 184 ++ + M+ R GSI+ +GS + + +AY ++K + FT+ L E A +NIR N Sbjct: 125 RSVSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 185 LIGPGFVKTPL 195 ++ PG +T + Sbjct: 184 IVSPGSTETDM 194
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.7 bits (72), Expect = 0.002 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 32/126 (25%) Query: 65 ILGRIGDHHGRKKVLLLSVSIMTVSTFCIALLPTYSQTGIIAPILFILF--RLIQGLAIS 122 +LG + D GR+ VLL+S++ V +A AP L++L+ R++ G+ Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMA----------TAPFLWVLYIGRIVAGIT-G 110 Query: 123 AEFTCSTSY-----QIERRSNKKSYLGALVQSTTLIG--------------SLFAALIVS 163 A + +Y + R+ ++ A + G FAA ++ Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALN 170 Query: 164 LLSFLL 169 L+FL Sbjct: 171 GLNFLT 176
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 2e-06 Identities = 58/345 (16%), Positives = 119/345 (34%), Gaps = 25/345 (7%) Query: 53 ATGVGLLSSFYYYSYAAMQIPAGLAFDRMNARILITVSLTICAIGTLLFSLTDSFTLASL 112 G+L + Y A G DR R ++ VSL A+ + + + + Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI 101 Query: 113 GRFFTGFGSAFAFIAMLFIA---AQWFPTRYFGLIAGIGQFLASIGALAGQGPLAAIVSD 169 GR G A +A +IA R+FG ++ G +AG L ++ Sbjct: 102 GRIVAGITGATGAVAGAYIADITDGDERARHFGFMSAC----FGFGMVAGPV-LGGLMGG 156 Query: 170 LGWREALQGLGFIGITLAVIILLILKDKRHHHTDNQSITKKSKTTPNNHLSIKQQLTILF 229 + + +L + + K + P ++ + + Sbjct: 157 FSPHAPFFAAAALNGLNFLTGCFLLPE-----------SHKGERRPLRREALNPLASFRW 205 Query: 230 KHPETFKIALY--SFAAWAPITIFASLWGVPFLRTHYQLTINDAA-NLSSTIWLGIALGS 286 T AL F + A+LW V F + +L++ L + Sbjct: 206 ARGMTVVAALMAVFFIMQLVGQVPAALW-VIFGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 287 PLIGYWSDKIRQRKPLLLLAATLGIIASLIVLYSPSLPVTLLYVLMFFFGVGA-AGQSLS 345 + G + ++ +R+ L+L G L+ + + VL+ G+G A Q++ Sbjct: 265 MITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAML 324 Query: 346 FAYIKDYQQDNILGTAIGFNNMAVVISGALFQPLVGFIMSQLWDG 390 + + +Q + G+ ++ ++ LF + ++ W+G Sbjct: 325 SRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITT-WNG 368
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.0 bits (88), Expect = 4e-06 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 45 ILAAHTHQRIVGFMGLQQHAPITTEVALIAILKPYQQQGIGLSLIDAAEKYSRNIRHQYL 104 + +G + ++ + + IA+ K Y+++G+G +L+ A ++++ L Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGL 126 Query: 105 VVKTPYDENNTPASQRIAERFYSKVGF 131 +++T + N A FY+K F Sbjct: 127 MLET--QDINISAC-----HFYAKHHF 146
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 41.0 bits (96), Expect = 2e-05 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 32/143 (22%) Query: 1 MKHIHIALLGNPNSGKTTLFNQL---TGSKQKVG---------NWA------GVTVEKKT 42 MK I+I +L + ++GKTTL L +G+ ++G + G+T++ Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 43 GSFTYQHHDIQLTDLPG--TYSLNVASAQSSLDERIACEYLLQEKVNLVINIVDAANLER 100 SF +++ + + D PG + V + S LD I L+I+ D + Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAI-----------LLISAKDGVQAQT 109 Query: 101 NLYLTSQLLEMRIPCIIALNMLD 123 + L L +M IP I +N +D Sbjct: 110 RI-LFHALRKMGIPTIFFINKID 131
>PF05043#Transcriptional activator Length = 493 Score = 28.8 bits (64), Expect = 0.007 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 17/121 (14%) Query: 33 AKRLRGKHKPVYTPHVDTGDYIIVVNADKVAVTGNKAKDK-LYHRHTGFPGGIKSLPFDE 91 R+ + V V+ V + GN+ + + ++ PF+ Sbjct: 117 LYRIISQINKVIKRQFQFE-----VSLTPVQIIGNERDIRYFFAQYFSEKYYFLEWPFEN 171 Query: 92 AKAKNPQRVIELAVKGM-LPRGPLGRAMF---------RKLKVYAGAEHDHAAQQPQLLE 141 ++ +++EL K P M R + E D + Q L+ Sbjct: 172 FSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTNLYRIKFGHF-MEVDKDSFNDQSLD 230 Query: 142 I 142 Sbjct: 231 F 231
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 102 bits (257), Expect = 1e-32 Identities = 35/88 (39%), Positives = 54/88 (61%) Query: 4 TKAVLMDKLFADLGVNKQDAKMIVDLFFEEIQSALEKGQIVKLSGFGNFMLRDKKERPGR 63 K L+ K+ + K+D+ VD F + S L KG+ V+L GFGNF +R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 64 NPKTGDEVAVSARRVVTFRAGQKLRARV 91 NP+TG+E+ + A +V F+AG+ L+ V Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 45.9 bits (109), Expect = 1e-07 Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 24/164 (14%) Query: 17 VIDQQKLLANLHFMQKFADQHGKQLRPHA------KTHKCSH-LAKLQQQIGAI-GICVT 68 +D Q L NL + +Q HA K + H + ++ IGA G + Sbjct: 8 SLDLQALKQNLSIV--------RQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALL 59 Query: 69 KVAEAEVLVKHGITG-ILITSPVVTPQKIQRLMILAKQDSSIMVVIDHTGNAEVLNQAAL 127 + EA L + G G IL+ Q ++ I + + V + + L A L Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLE---IYDQHRLTTCVHSNW--QLKALQNARL 114 Query: 128 QADITLKVLVDIDPGVQRTGISYQQALTLGKQLHELQGLELQGI 171 +A L + + ++ G+ R G + LT+ +QL + + + Sbjct: 115 KA--PLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTL 156
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 27.5 bits (61), Expect = 0.007 Identities = 6/37 (16%), Positives = 15/37 (40%) Query: 7 TAFTREEAEAFVQRHKEAVNFADPHALLSIFKIQFDD 43 + + + + VN +PH L + + +D+ Sbjct: 228 SVMAVSKEYSKYWKEIPYVNNVNPHMLQYLGNLPYDN 264
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 49.2 bits (117), Expect = 2e-09 Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 19/151 (12%) Query: 42 SAGY-LFGGRQLR--YGAELGLARYASSCYQSANTSLTYQGASADLLGVLSYQLGARWNV 98 G FGG Q+ G E+G Y+ + + Y+ L L Y + ++ Sbjct: 55 QLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDI 114 Query: 99 FGKLGLAYIDQQTEGNLFPNQLDSSNALQPKVALGLGYSLTAAIGVNLSYSHT--FGDQP 156 + +LG T+ N++ D + P A G+ Y++T I L Y T GD Sbjct: 115 YTRLGGMVWRADTKSNVYGKNHD--TGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAH 172 Query: 157 EGLAKNAEPTPVMLNKVASTDLLSFGLSYRF 187 + +LS G+SYRF Sbjct: 173 ------------TIGTRPDNGMLSLGVSYRF 191
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 344 bits (885), Expect = e-120 Identities = 143/356 (40%), Positives = 206/356 (57%), Gaps = 2/356 (0%) Query: 1 MARKTQAHLSRDALLHNLNHIRAHAPGCQVVGVVKANAYGHGLEDASRVLASYVDYLGVA 60 M R QA L AL NL+ +R A +V VVKANAYGHG+E + + D + Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGA-TDGFALL 59 Query: 61 TIEEAMTLVMMPVKTIVLLMEGIFQDSELELVAEHGLEMVLHEEGQILALEQAQLSAPIT 120 +EEA+TL K +L++EG F +LE+ +H L +H Q+ AL+ A+L AP+ Sbjct: 60 NLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLD 119 Query: 121 VWLKLDTGLGRLGFPAKLVSMLYQRLRCCANVKKIKLMSHFSASDTNFSYTQKQLKCFMD 180 ++LK+++G+ RLGF V ++Q+LR ANV ++ LMSHF+ ++ + + Sbjct: 120 IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAE-HPDGISGAMARIEQ 178 Query: 181 MTQGLVAEKSIANGAAIFNCPESCVDIVRPGGLLYGVGLWQGKKSGVDEGLRPVMSLRSH 240 +GL +S++N AA PE+ D VRPG +LYG + + GLRPVM+L S Sbjct: 179 AAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSE 238 Query: 241 LISVKDYQAGDYIGYGRCWQCSGPMRVGVVAIGYGDGYPVTAPDGTPTLVCGVEAPLIGR 300 +I V+ +AG+ +GYG + R+G+VA GY DGYP AP GTP LV GV +G Sbjct: 239 IIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGT 298 Query: 301 VSMDMITIDLELCPDAKVGDEVVLWGDGLPVERVAHHVGVVPYALLCAVAPRVKLV 356 VSMDM+ +DL CP A +G V LWG + ++ VA G V Y L+CA+A RV +V Sbjct: 299 VSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVV 354
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 0.001 Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 23 NNNFSVMRYWFEEPYESFVELEELYNKHIHDQSERRFIIENSDNNIVGLVELLEIDYIHR 82 N ++ F +PY E +++ ++ ++ + + +NN +G +++ ++ Sbjct: 32 NGVWTYTEERFSKPYFKQYEDDDMDVSYV-EEEGKAAFLYYLENNCIGRIKIRS-NWNGY 89 Query: 83 NAEYTVLIDPNYQGRSYSLQATEQVLGYAFNVLNLHKVYLLVDERNEKAIHVYKKAGFI 141 + + +Y+ + + + +A + + L + N A H Y K FI Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN-HFCGLMLETQDINISACHFYAKHHFI 147
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.4 bits (66), Expect = 0.028 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Query: 1 MRVTVFG-AGYVGLVTAACFADLGNQVICVDVDEKKLAQLAEGKSPIYEPGLDELLLRGQ 59 M+ V G AG++G + + G+QV+ +D + Y+ L + L Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDN-----------LNDYYDVSLKQARLELL 49 Query: 60 ESGNLEF-TADIQSA 73 +F D+ Sbjct: 50 AQPGFQFHKIDLADR 64
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 66.4 bits (162), Expect = 4e-14 Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 5/152 (3%) Query: 177 LSNISHSFGATFAATGQSITAFTLCYAVAAPIAAALFSGKPARKVLFVALAIFSIANIVS 236 L +I++ F A+T TAF L +++ + L +++L + I +++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 237 ALATS-LSMLLVSRALAGLGAGLFSPMAAAVAAMLVPAEKKGRALGLILGGMSTGTVIGV 295 + S S+L+++R + G GA F + V A +P E +G+A GLI ++ G +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 296 PIGLLVNNYLGWRYVFIMVTCIGFIGIIGILF 327 IG ++ +Y+ W Y+ ++ I II + F Sbjct: 157 AIGGMIAHYIHWSYLLLIPM----ITIITVPF 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 3e-08 Identities = 23/112 (20%), Positives = 54/112 (48%), Gaps = 12/112 (10%) Query: 68 TVLVADDSSVARRHVKQVLDQIGVNVIMTNDGQHALDILEHDIPRTAGDVSRKYLMLISD 127 T+LVADD + R + Q L + G +V +T++ + GD+ +++D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG----DGDL------VVTD 54 Query: 128 VEMPEMDGYSLIKNCREHPGLKNLFIMLNTSITSVFNELDSKEVGCNEFVGK 179 V MP+ + + L+ ++ +L +++ ++ + + + E G +++ K Sbjct: 55 VVMPDENAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 30.9 bits (70), Expect = 0.003 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 25/85 (29%) Query: 102 VPARIMSAIPMSGLVDHYDRRKAMHHLSEGRAVIFAAGTGNPLVTT-------------D 148 P + A + LV+ G VI + G G P++ D Sbjct: 169 DPKGHVEAETIKKLVER------------GVIVIASGGGGVPVILEDGEIKGVEAVIDKD 216 Query: 149 SAASLRGIEVDVDLLLKATRVDGVY 173 A EV+ D+ + T V+G Sbjct: 217 LAGEKLAEEVNADIFMILTDVNGAA 241
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.007 Identities = 38/219 (17%), Positives = 67/219 (30%), Gaps = 24/219 (10%) Query: 278 VEQSANIPETESSHQSSTSLQAAGPSTSALEAEIFLQSSVSDEDEPTSADASLSLEQQAQ 337 VE+ +T + + ++QA PS + EI P A S + E A+ Sbjct: 985 VEKRNQTVDTTNI-TTPNNIQADVPSVPSNNEEIARVDEAPVPP-PAPATPSETTETVAE 1042 Query: 338 SVGRRAEVTGWGFDLCKQQLENFKKHEAACEQRLDSCAESLTTLEIRVQHLQQMLSARRQ 397 + KQ+ + +K+E + E + V+ Q + Sbjct: 1043 NS--------------KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS 1088 Query: 398 KLEATSAQTTEPSPSTSGVGASYQPSANDQVAEPSTSTSGAGASYQPSASDQVIQPSPST 457 E QTTE + + ++ E TS S + Q Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS--------QVSPKQEQSETVQ 1140 Query: 458 PEAGPSHQPSASEQVAEASPSTAGAGASSQPNMNIPGGP 496 P+A P+ + + + E T + QP Sbjct: 1141 PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.003 Identities = 22/93 (23%), Positives = 48/93 (51%) Query: 89 KQKHQGHQEHQGSQKQSGSKLRAERTKIHSLRLKLLEAISSHKHVKNKENISLLEAELEQ 148 +++ + ++ Q +QK K + ER K + L A+S+ +++ N +N+S L + + Sbjct: 149 EKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRE 208 Query: 149 KDQLLEEKQQKVEELQQQNQLLQQQLLEQKSGK 181 + E+ + ++E Q N L Q + L +K + Sbjct: 209 NELDQMERLEDMQEQAQANALKQIEELNKKQAE 241
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.0 bits (91), Expect = 2e-05 Identities = 49/310 (15%), Positives = 96/310 (30%), Gaps = 26/310 (8%) Query: 61 IVISPFAGRLVDAKGSIICIQYSSIFCFFLTIGLIFTNSYLLLFIIVFIRSSLKTVFFPA 120 +P G L D G + S+ + ++ T +L + I I + + Sbjct: 57 FACAPVLGALSDRFGRRPVL-LVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAV 115 Query: 121 LSRIIKLTVDKKQLLSVNSLIQFNANGLLIIAPIIGMIVFSTLGKKWCFLITSILFFLTF 180 I D + + ++ P++G ++ F + L L F Sbjct: 116 AGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNF 174 Query: 181 SLSFFLKEVSDKRSQVDMGLLS---QSDLDIKKLLVPFLGMMIAAFAIYL---------- 227 FL S K + + + + + + +M F + L Sbjct: 175 LTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 228 --GDSLFPLLLKSIGLDFKDFALIGSFFGIGGMAASIFCQCYKNSNEVTLIKLGAILVII 285 G+ F +IG+ F ++ S A I E + LG I Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLA-----QAMITGPVAARLGERRALMLGMIADGT 289 Query: 286 SMFTYGMFSSMLSQCVFFVFAMLNAGGITLISISSATLLQKNTPAHMMGKVSSINNMIFG 345 + F + +L +GGI + ++ +L + G++ + Sbjct: 290 GYILLAFATR--GWMAFPIMVLLASGGIGMPALQ--AMLSRQVDEERQGQLQGSLAALTS 345 Query: 346 LASIIIPMLG 355 L SI+ P+L Sbjct: 346 LTSIVGPLLF 355
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 36.6 bits (84), Expect = 7e-04 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 16/63 (25%) Query: 16 QKLLNKIQAVVPEVAELYSEY---VYFVDVN-------RELAADEKNSLNSLLHYGEMAP 65 Q LL KI +V E+YSE +YF D++ ++L+ +EKNS+NS GE P Sbjct: 83 QDLLKKIPK---DVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNS---RGEKVP 136 Query: 66 VLS 68 S Sbjct: 137 FAS 139
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 33.6 bits (77), Expect = 0.001 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 32/172 (18%) Query: 52 LFAIYAIGA-LFRPVGSIMWGHFADRYGRKKTLITTSFIMIFSTLCISILPNGHQAPIFS 110 L A+YA+ PV G +DR+GR+ L+ + + + + +I+ + Sbjct: 48 LLALYALMQFACAPVL----GALSDRFGRRPVLLVS---LAGAAVDYAIMATAPFLWV-- 98 Query: 111 PIALLTLRCLQGVSLGGDASSAAVLIAETVSNKKRGFYVSFVFAMNSLGSLLAAAMAYLL 170 L R + G++ G + A IA+ +R + F+ A G + + L+ Sbjct: 99 ---LYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM 154 Query: 171 LKITPANVMLEWGWRIPFVFGAFL-----LIICLIFRSGVLESTIFEKNPQR 217 +P PF A L L C + ES E+ P R Sbjct: 155 GGFSP---------HAPFFAAAALNGLNFLTGCFLLP----ESHKGERRPLR 193
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 117 bits (293), Expect = 5e-34 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 22/259 (8%) Query: 2 AMQDHVVVVTGGSMGIGLAVVKKFLQKKAIVYNLD--------LQAGES--GRY---LSC 48 ++ + +TG + GIG AV + + A + +D + + R+ Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 49 DVSDSQQVSRAIHEVIRQEGRVDILVSNAGVHFSATIENSAEADYQRVMDINVKGTFFSV 108 DV DS + + R+ G +DILV+ AGV I + ++ +++ +N G F + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 109 QAVIAQMRQQKSGNIVLLSSEQAFVGKPNSSLYGMSKAAIASLARTTALDYAKFNVRVNA 168 ++V M ++SG+IV + S A V + + + Y SKAA + L+ A++N+R N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 169 VCAGTIETPLYHQAIDNYCHRTGANLTQVHQEEAAL----QPLGRIGRPEEVAELVYFLA 224 V G+ ET + + GA QV + PL ++ +P ++A+ V FL Sbjct: 185 VSPGSTETDMQWSL---WADENGA--EQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 225 SEKAAYITGSLQVIDGGYT 243 S +A +IT +DGG T Sbjct: 240 SGQAGHITMHNLCVDGGAT 258
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.4 bits (66), Expect = 0.027 Identities = 7/29 (24%), Positives = 15/29 (51%) Query: 109 KADDVELSKSNILLVGPTGCGKTLLAQTL 137 + + +++ G +G GK L+A+ L Sbjct: 152 VLARLMQTDLTLMITGESGTGKELVARAL 180
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 104 bits (262), Expect = 3e-33 Identities = 40/87 (45%), Positives = 60/87 (68%) Query: 3 KTELVEVISKKADISKKAAGRLVDIMLESIEGGLKEGDSVDLKGFGKFEMKQRAARVGRN 62 K +L+ +++ +++KK + VD + ++ L +G+ V L GFG FE+++RAAR GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 63 PRTGEEIEIPAATVPVFKPSKALKAAV 89 P+TGEEI+I A+ VP FK KALK AV Sbjct: 64 PQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.044 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 4 RHLNEKDRFYIEQRLSE-GDSLRSIARALGFSPSTISREIKRH 45 R L E + I L+ + A LG + +T+ ++I+ Sbjct: 431 RVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 29.6 bits (66), Expect = 0.018 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Query: 1 MKLKLITCSVALSVAASTTFAAT-ADSLKLELDKLKAS 37 MK+KL+T ++ + +A ST AAT A SL + DKL S Sbjct: 1 MKMKLVTAAI-MGLAMSTAMAATDATSLTTDKDKLSYS 37
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 65.8 bits (160), Expect = 7e-14 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 35/167 (20%) Query: 78 PKSTGSGVIINADKGYILTNYHVIAEAKKIRVTLK------------DGRQLTAKVIGND 125 SGV++ K +LTN HV+ LK +G ++ Sbjct: 100 GTFIASGVVVG--KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 157 Query: 126 KGTDIAIIKISA--------KNLEQIRLPKPNYIPDVGDFVVAVGSPYGL---SQTVTSG 174 D+AI+K S + ++ + V + G P + + G Sbjct: 158 GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQ-VNQNITVTGYPGDKPVATMWESKG 216 Query: 175 IISALDRNNLGIEGFENFIQTDAPINPGNSGGALVNLQGQLVGINTA 221 I+ ++G +Q D GNSG + N + +++GI+ Sbjct: 217 KIT-------YLKG--EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 27.1 bits (60), Expect = 0.044 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Query: 93 TADLAAVIDWVKAQQPDHEIWLAGFSFGGYV---AYR---GASRFNVNQLLLVAPA 142 T D A+ID +A+ ++ L G+SFG V R NV +L++P+ Sbjct: 100 TQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMPARYRKNVLGAVLLSPS 155
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.5 bits (113), Expect = 5e-08 Identities = 54/346 (15%), Positives = 120/346 (34%), Gaps = 23/346 (6%) Query: 25 IGLVSPQISTYYNVDISNIVYIDVLNIVGLLIGNF---------FSGRLIEKINTHNTLC 75 IGL+ P + + + DV G+L+ + G L ++ L Sbjct: 21 IGLIMPVLPGLLRDLVHSN---DVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL 77 Query: 76 SAIALGIIAESLLALGLPLSFYTACSMLNGISIGFLVPAVTQSISDLHTISREKDSKLSL 135 ++A + +++A L ++ GI+ G I+D+ T E+ Sbjct: 78 VSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADI-TDGDERARHFGF 135 Query: 136 LNFFFSLGSVFVPIVGGYITHYLSWRGVFAMLAILYVFLLICALTFKIKPTCDNTPKSQQ 195 ++ F G V P++GG + + S F A L + F + + + + Sbjct: 136 MSACFGFGMVAGPVLGGLMGGF-SPHAPFFAAAALNGLNFLTGC-FLLPESHKGERRPLR 193 Query: 196 SQTKNNQSIFNLSLILIGIALVCYVY-----IEYVVSYWFSPYLQMDKHISVIETGKLLG 250 + N + F + + +A + V+ + V + + + + H G L Sbjct: 194 REALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLA 253 Query: 251 IFGASIAAVRLIAGLYLLKKIRATNYITLSCITVFIGFLFFLNSSSYFSFMASIILIGCG 310 FG + + + + ++ + L I G++ ++ + ++L+ G Sbjct: 254 AFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG 313 Query: 311 CASLFPTLLGYGIAQA-NYQSPRATSFLITCGSIGGFVGLIMSGFL 355 + P L Q + + L S+ VG ++ + Sbjct: 314 GIGM-PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 39.0 bits (91), Expect = 4e-05 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%) Query: 5 LITNATIINEGQKTEADLFIKNGRIEHI----------DSDLSHKPVKQVIDAKNKWLIP 54 +ITNA I++ +AD+ +K+GRI I + P +VI + K + Sbjct: 71 VITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTA 130 Query: 55 GMIDDQVHFREPGLTHKGEMRTESRAAAAGGITSVM 90 G +D +HF P + A G+T ++ Sbjct: 131 GGMDSHIHFICP---------QQIEEALMSGLTCML 157
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 47.0 bits (112), Expect = 8e-08 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Query: 19 DFGLIHQGAIAVKEGNIAWLGRAGDLDSR-----YIGIDTQVHNGQGRYLTPGLIDCHTH 73 D I + I +K+G IA +G+AG+ D + +G T+V G+G+ +T G +D H H Sbjct: 79 DHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIH 138 Query: 74 MV 75 + Sbjct: 139 FI 140 Score = 31.2 bits (71), Expect = 0.008 Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 349 TVHAAKALGMADRVGQLKVGMQADFSLWE 377 T++ A A G++ +G L+VG +AD LW Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLVLWN 438
>SECA#SecA protein signature. Length = 901 Score = 31.8 bits (72), Expect = 0.008 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 9/49 (18%) Query: 167 GKVLPA---SEGLKQLGLEPIALGAKEGLALNNGTQVSTAICLKNYFAL 212 G+ + S+GL Q A+ AKEG+ + N Q +I +NYF L Sbjct: 341 GRTMQGRRWSDGLHQ------AVEAKEGVQIQNENQTLASITFQNYFRL 383
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 32.2 bits (73), Expect = 9e-04 Identities = 13/93 (13%), Positives = 34/93 (36%) Query: 55 LGLAYLKAEDFRRAQYKLSKAIKLDPHRAEVHYAFAYYLETVGEFEKAQQEYLTALNIAP 114 L ++ + A LD + + + +G+++ A Y + Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 115 DDPKVLNNYGAFLCRQGQVDKSLRYLLAAAEHV 147 +P+ + L ++G++ ++ L A E + Sbjct: 102 KEPRFPFHAAECLLQKGELAEAESGLFLAQELI 134 Score = 27.6 bits (61), Expect = 0.029 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 2/124 (1%) Query: 60 LKAEDFRRAQYKLSKAIKLDPHRAEVHYAFAYYLETVGEFEKAQQEYLTALNIAPDDPKV 119 L E F + ++ ++ E Y+ A+ G++E A + + + D + Sbjct: 13 LAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRF 72 Query: 120 LNNYGAFLCRQGQVDKSLRYLLAAAEHVEYLDRAGSYENAGLCALKIDELKYAQHYLTQA 179 GA GQ D ++ A R +A C L+ EL A+ L A Sbjct: 73 FLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRF--PFHAAECLLQKGELAEAESGLFLA 130 Query: 180 LQLA 183 +L Sbjct: 131 QELI 134
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 9e-15 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 1/114 (0%) Query: 22 TVLTVDDSKTIHGIAKNLLSGSEFDIIDVAHNGNDGVEKYKKLKPNFVLMDIVMPELDGM 81 T+L DD I + LS + +D+ + N + V+ D+VMP+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDV-RITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 82 SALKKIIDFDPHAQVVMATSMGQEDTVEQAITIGAKGYLLKPYDKESVLVVLRT 135 L +I P V++ ++ T +A GA YL KP+D ++ ++ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 46.5 bits (110), Expect = 4e-08 Identities = 24/190 (12%), Positives = 55/190 (28%), Gaps = 17/190 (8%) Query: 186 QAEQVRQQALEKKREQEQLHQRQALEKKQREAAAKVKREAEVAAEK-------QRQQALA 238 V LE + + + + + E + +EA V EK + + Sbjct: 51 SVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 110 Query: 239 RLRANAQSNIANQLAENARVAAARTARQQYVQSEFEKYSGLIVTEISRHWNQANID-PSL 297 + + A + V R ++ P+ Sbjct: 111 VEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPAR 170 Query: 298 NA--------LIQVNVDVTGDILSVKIVKSSGNAIFDRQAKLAVLSAGRLPMPTDKEVAQ 349 ++ +V G + +V+I+ + +F+R+ K A+ P + Sbjct: 171 AQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVV 230 Query: 350 RFLSFQFHFT 359 + F+ + T Sbjct: 231 N-ILFKINGT 239
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 81.9 bits (202), Expect = 1e-20 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 10/110 (9%) Query: 100 VYFGFDQYSVGKTDQDIVQSNVNYL--LKHPKQKVLLEGYTDPRGSSQYNLNLGQKRANS 157 V F F++ ++ Q + + L L V++ GYTD GS YN L ++RA S Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 158 LKDALLSAGVGPQQVSTLSYGKE-------CLAVPGGTAEAD-YQKDRRV 199 + D L+S G+ ++S G+ C V A D DRRV Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRV 330
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 0.001 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 46/195 (23%) Query: 467 EKIIQQSLEGAEKVKNIVLSL-----KSFAHSDTDN---KEEFDLNHCIEQALTITQNEL 518 I LE K + ++ SL S +S+ +E + ++ L + + Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTV---VDSYLQLASIQF 236 Query: 519 KYKCKIIKNLSPLNPLLGYSSQIGQVIMNLLI-NA-AHAIKES---GTITITTQQIAGFN 573 + + + ++P ++ Q+ +++ L+ N H I + G I + + G Sbjct: 237 EDRLQFENQINP--AIMDV--QVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTV 292 Query: 574 KLTIEDDGYGIHKDHLAKLFDPFFTTKSVGEGTGLGLS-------ISYGIIKKHQGSINV 626 L +E+ G K+ E TG GL + YG + I + Sbjct: 293 TLEVENTGSLA--------------LKNTKESTGTGLQNVRERLQMLYG----TEAQIKL 334 Query: 627 ESTVGQGTVFTIQLP 641 G+ + +P Sbjct: 335 SEKQGKVNA-MVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.5 bits (235), Expect = 8e-25 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 2 PSLLLVDDEPHIIDALKRLFRREKYTLHCAYSAKEGLDILAQQHIDIILSDQRMPSMLGS 61 ++L+ DD+ I L + R Y + +A +A D++++D MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EFLAKAQAQSPQTLRIILSGYADTKEIINGILNNHIHQFLEKPWRANELREHLRHLINL 120 + L + + P +++S I + +L KP+ EL + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKG-AYDYLPKPFDLTELIGIIGRALAE 121
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 50.1 bits (119), Expect = 4e-08 Identities = 51/300 (17%), Positives = 115/300 (38%), Gaps = 1/300 (0%) Query: 716 QALQRELAEVKARVSGRLAHIEQVRARLAVVEHELSEALELFNEEQEEIKIARQRLEIAV 775 ++ L +V+ R ++ + + + + +E EE+ A+++L Sbjct: 46 RSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKND 105 Query: 776 EKMAELELQRQALESGRVEASRTTQEARQQLESLKSQYQQKQMQLQRVQSEQAGIKAALQ 835 + ++E + Q LE+ + + + + A + ++ + + + + + +A ++ AL+ Sbjct: 106 KSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE 165 Query: 836 RLEELLGRDKVRLVELEQSRIGLEEPLEEQRMLLDEQLERQLSFEDRLKTVKDQAQAHEN 895 D ++ LE + LE E L+ + + ++KT++ + A Sbjct: 166 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 896 QVRTFEKQLHEQMNQVAHAREALEQGRMQAQELFIRRQSVEEQLVEAGFQLRGLL-EIYQ 954 + EK L MN ++ + L R+ +E+ L A +I Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Query: 955 EGCDVKELETALEDIGRRIQRLGVINLAAIDEYAGQSERKVYLDAQHDDLTEALDMLEAA 1014 + LE D+ + Q L + + E K L+A+H L E + EA+ Sbjct: 286 LEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEAS 345 Score = 43.1 bits (101), Expect = 7e-06 Identities = 34/219 (15%), Positives = 68/219 (31%) Query: 168 AGISKYKERRKETERRIRHTRENLERLGDIREELGKQLSRLHQQAQAAEKYQNFKKEERE 227 A + K E + LE L + + A + K + E Sbjct: 123 ADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 182 Query: 228 VKGQLYIQRWKSLQTQHGQEQKKIQEHEVIVEKQRAGQQHIDASLEKERLALSEASEKLH 287 + R L+ ++ A + + A AL A Sbjct: 183 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 242 Query: 288 ACQADYYQAGNEVSRLEQQIEHATTRIRETGQEMARLNTSLEKARSELAADEQQKVLLSA 347 A A E + LE + + + ++ +E AA E +K L Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 348 QEEALEPETELLQNAVDEAALSAEEAEVSYRQLEKERES 386 Q + L + L+ +D + + ++ E +++LE++ + Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 341 Score = 42.7 bits (100), Expect = 8e-06 Identities = 29/191 (15%), Positives = 73/191 (38%) Query: 670 EKELMTLRQQELALEESICLHEEQLSQSQEVLMQVEAQVKSVQQQAQALQRELAEVKARV 729 E E L ++ LE+++ + + +EA+ +++ + L++ L Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 730 SGRLAHIEQVRARLAVVEHELSEALELFNEEQEEIKIARQRLEIAVEKMAELELQRQALE 789 + A I+ + A A + ++ + +++ + A LE ++ LE Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 790 SGRVEASRTTQEARQQLESLKSQYQQKQMQLQRVQSEQAGIKAALQRLEELLGRDKVRLV 849 A + ++++L+++ + + ++ + + A Q L L + Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 850 ELEQSRIGLEE 860 +LE LEE Sbjct: 327 QLEAEHQKLEE 337 Score = 39.3 bits (91), Expect = 8e-05 Identities = 35/232 (15%), Positives = 76/232 (32%), Gaps = 2/232 (0%) Query: 273 EKERLALSEASEKLHACQADYYQAGNEVSRLEQQIEHATTRIRETGQEMARLNTSLEKAR 332 E +A ++ L Q + E + L+ + + + L L A+ Sbjct: 39 EVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAK 98 Query: 333 SELAADEQQKVLLSAQEEALEPETELLQNAVDEAALSAEEAEVSYRQLEKERESLLQQVA 392 +L +++ +++ + LE L+ A++ A + + LE E+ +L + A Sbjct: 99 EKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 158 Query: 393 LCRQEAEVEQTRIRHMEEQGQRLQQRLERLRAETH--NSDLISLEVGLEDVQGQQRELEE 450 + E + + L+ L A L + + LE Sbjct: 159 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 218 Query: 451 KEQELQLGAEEQQQRLIQQRQLIEQQRKGLEQQRGELHPLKGRLASLEALQQ 502 ++ L + ++ L ++ E L+ R A LE + Sbjct: 219 EKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 270 Score = 37.0 bits (85), Expect = 5e-04 Identities = 36/207 (17%), Positives = 84/207 (40%) Query: 670 EKELMTLRQQELALEESICLHEEQLSQSQEVLMQVEAQVKSVQQQAQALQRELAEVKARV 729 ++ TL ++ ALE E+ L + A++K+++ + AL+ E A+++ + Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Query: 730 SGRLAHIEQVRARLAVVEHELSEALELFNEEQEEIKIARQRLEIAVEKMAELELQRQALE 789 A+ + +R L + + +E+ KI+ + + ++ LE Sbjct: 305 QVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLE 364 Query: 790 SGRVEASRTTQEARQQLESLKSQYQQKQMQLQRVQSEQAGIKAALQRLEELLGRDKVRLV 849 + + + + +SL+ + ++V+ + L LE+L + Sbjct: 365 AEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKK 424 Query: 850 ELEQSRIGLEEPLEEQRMLLDEQLERQ 876 E+ + L+ LE + L E+L +Q Sbjct: 425 LTEKEKAELQAKLEAEAKALKEKLAKQ 451
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 68.0 bits (166), Expect = 1e-14 Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 20/240 (8%) Query: 2 TNKSNNPTALILFFILLIVPIGQVAIDIYLPSLPYISQELAISTSVTQWSLTIYLLSSGL 61 +N +N + L + + ++ +++ SLP I+ + + T W T ++L+ + Sbjct: 8 SNLRHNQILIWLCILSFFSVLNEMVLNV---SLPDIANDFNKPPASTNWVNTAFMLTFSI 64 Query: 62 SQFFYGPISDSLGRKPILCYGLIIFFIGSLVCAQAQGELSLL-AGRLLQGLGIGA----G 116 YG +SD LG K +L +G+II GS++ SLL R +QG G A Sbjct: 65 GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALV 124 Query: 117 AVISNAMVGDHFHGIHLAKVTSLSSFAYGISPIIAPFIGGLIQTHLGWRFNFYFLLIITA 176 V+ + G + S+ + G+ P IGG+I ++ W + +IT Sbjct: 125 MVVVARYIPKENRGKAFGLIGSIVAMGEGVGPA----IGGMIAHYIHWSYLLLI-PMITI 179 Query: 177 ASLLLAIALLPETLNKQNKQHLNIKTLKQNYLSILKQKIF-----WGYVLCMTLSFAISI 231 ++ + LL + + K H +IK + + I+ +F +++ LSF I + Sbjct: 180 ITVPFLMKLLKK--EVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 183 bits (466), Expect = 9e-54 Identities = 131/527 (24%), Positives = 222/527 (42%), Gaps = 24/527 (4%) Query: 5 INTNFTAILGQNRLESVNTEINRVMQRLTTGKRVNTAADDAAGYAIITRMTTRLKGYDTA 64 INTN ++L QN L + ++ ++RL++G R+N+A DDAAG AI R T+ +KG A Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 65 VRNASDAVSLVQIAGGAVGQQVNMLQRVRTLALQSANDTNNTTDRANLNLEVQEIIEEFG 124 RNA+D +S+ Q GA+ + N LQRVR L++Q+ N TN+ +D ++ E+Q+ +EE Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 125 FVAERTKFNGVRLLDGSLANQMFQIGVEVDDTLSLTFGNTKTEVIGMAEYGGGITGSAIG 184 V+ +T+FNGV++L Q+G +T+++ + +G+ G Sbjct: 124 RVSNQTQFNGVKVLSQD-NQMKIQVGANDGETITIDLQKIDVKSLGL---DGFNVNGPKE 179 Query: 185 AAQGDNMGALRAGVLGTAGAAADLNAFVNQIVAQSITIAGHAGPAKTVAYAVPGAAGQAS 244 A GD + + A + ++G T A Sbjct: 180 ATVGDL----------KSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYV 229 Query: 245 SAKDVAKALNTEKASTGVRVEARTRMTLSNLQNPGQI-SFVLYGDGALLTANPSTGGFAV 303 +A + + + +T V + T+ T + + +G T Sbjct: 230 NAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDT 289 Query: 304 NVNIADQNDLTSLAAGINDLSGSTGITASLSPDLNEIMLEHADGENIAIENFLNSGTGTM 363 +++ G ITA + + + + T Sbjct: 290 KTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTK 349 Query: 364 AVQGMDGVAATNLTSGGTDSIAAVGTLQFKSDKQFDIASTVAGTNTVGGIFVGAAGDTKF 423 S + A G + + A+ T+ G + Sbjct: 350 NESA--------KLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTAS- 400 Query: 424 SLLSSVKDMNILDRFNALLTVEIVDAALDALTTIGAELGAKQNRLDVTIASIENQELNLT 483 + + + + + + + +D+AL + + + LGA QNR D I ++ N NL Sbjct: 401 GVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLN 460 Query: 484 SARGRIEDADFAAESTNLSKFQVLLQAGTAMLAQANQLPATALQLLQ 530 SAR RIEDAD+A E +N+SK Q+L QAGT++LAQANQ+P L LL+ Sbjct: 461 SARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 159 bits (403), Expect = 4e-45 Identities = 125/502 (24%), Positives = 198/502 (39%), Gaps = 18/502 (3%) Query: 2 SLQTTLQRLATGKRINSPADDAAGYAIAARQTSDILSFGQAARNANDGISVVQTASSAIN 61 SL + ++RL++G RINS DDAAG AIA R TS+I QA+RNANDGIS+ QT A+N Sbjct: 23 SLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTEGALN 82 Query: 62 TNISSLQRMRVLALQSLNDTNSSSDRVNLSLEFKQLSASITETAKSTKFNGQSLLDGSFA 121 ++LQR+R L++Q+ N TNS SD ++ E +Q I + T+FNG +L Sbjct: 83 EINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDN- 141 Query: 122 GKQFQVGITTTETISMSFADSRATAVGDYKTTAVNAGGAVFDFEMVATALGTATLGTGQD 181 + QVG ETI++ ++G A L ++ Sbjct: 142 QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATV------GDLKSSFKNVTGY 195 Query: 182 VDNGILAASGLTVVGHLGTKALADADFGAAGSSFGLATATTTSAGMSAAVIAKAVSDSSG 241 + A V A A T+ + Sbjct: 196 DTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKS 255 Query: 242 DHGVTATGRTEVTLSGLTAAGDVSFSLGSGTGSVAADYSFATISSTIADTSDLSALAQAI 301 G + G + + T ST + ++ I Sbjct: 256 TAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADI 315 Query: 302 NDTSGTHGVTAELSGTDKGSMTLVSENGQNISLAVFDSSAAGTMTLTEQDGTATSVLQDA 361 + S + + + NGQ + +A L + Sbjct: 316 TAGAANVDAATLQSSKNVYTSVV---NGQFTFDDKTKNESAKLSDLEANNAVKGESKITV 372 Query: 362 GGNDSFIATGIVEYHSSKAFTLQSAVADIGTVVADASGFKSVADSDIKTTAEAKSAIFAL 421 G + + A + + + + + + ++ Sbjct: 373 NGAEYTANAA--------GDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASI 424 Query: 422 DQALNRLTDSQANNGAIENRLNVVISNLENQQLNTTNSRGRIEDADFASETANLSKLQIL 481 D AL+++ +++ GAI+NR + I+NL N N ++R RIEDAD+A+E +N+SK QIL Sbjct: 425 DSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQIL 484 Query: 482 SQVGTAMLAQANQIPAAVLSLI 503 Q GT++LAQANQ+P VLSL+ Sbjct: 485 QQAGTSVLAQANQVPQNVLSLL 506
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 27.9 bits (62), Expect = 0.014 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 2 IMKIEHTSISTQSTQQTAATPAKIKVNEVERLARLNQEIKEQEHVLQEFEQAEPVTEVQS 61 I+ H + + + Q + A K+ V L E KE + V VQ+ Sbjct: 25 ILANGHATANDRGVIQALKSLAIEKIIHV--FENLTDEQKEL---------IDTVLTVQN 73 Query: 62 RARIEQAIADINQFIQP 78 R E + IN ++ P Sbjct: 74 REDAESFLLKINPYVIP 90
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 86.8 bits (215), Expect = 1e-20 Identities = 42/262 (16%), Positives = 103/262 (39%), Gaps = 26/262 (9%) Query: 348 VRLTGNEVSNFSKVTRDNVGKGMAVVLVQTTLSSKKINGKDIFQRKTSERVISIATIQQA 407 +R + + V++ + + + + Q Sbjct: 55 IRTESTTAIDVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQG 114 Query: 408 LGNSFQITGIGEVKDAQSLAIQIRAGALPAPVQIVEDQVIGPTLGAQNIHIGLVSLAAAM 467 + +V+ A A+ ++I + +GP + + + + SL AA Sbjct: 115 AQGQ---ELVNKVETA--------LTAVDPALKITSFESVGPKVSGELVWTAVWSLLAAT 163 Query: 468 MVTLLFMLVYYR-AFGIYANIALILNMIFLFAIMSVMGATMSLPGIAAAVLHIGMAVDAN 526 +V + ++ V + F + A +AL+ +++ + +V+ L +AA + G +++ Sbjct: 164 VVIMFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDT 223 Query: 527 VLIFERIREELRA--GISPH----KAISQGFDRALATIVDSNLTTLIVAVVLFAIGTGSV 580 V++F+R+RE L + ++++ R + T + TTL+ V + G + Sbjct: 224 VVVFDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTGM----TTLLALVPMLIWGGDVI 279 Query: 581 KGFAVVLIIGIV----TSLFTA 598 +GF ++ G+ +S++ A Sbjct: 280 RGFVFAMVWGVFTGTYSSVYVA 301
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 302 bits (774), Expect = e-104 Identities = 101/308 (32%), Positives = 179/308 (58%), Gaps = 8/308 (2%) Query: 1 MEFFKQQTNIDFLGLRRWAGIFSVVICLGSIAIMAIKGLNWGLDFTGGYSVQVSYVKAPN 60 ++ ++TN DF + ++V+ + S+ + + GLN+G+DF GG +++ A + Sbjct: 5 LKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAID 64 Query: 61 LTKVRNALDAANFREARVTTYGSTR------DLQIRFAPQEGQSAGLSETQQGA-LKAKL 113 + R AL+ + ++ IR QE + QG L K+ Sbjct: 65 VGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKV 124 Query: 114 KTTLTLGQP-VEINSVNYIGSEVGSEMVQQGILAIIVSVLAIMVYVALRFDYRFAISAAV 172 +T LT P ++I S +G +V E+V + +++ + + IM Y+ +RF+++FA+ A V Sbjct: 125 ETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVV 184 Query: 173 ALAHDPLLILGIFSLFHIEFTLISLAALLAVIGFSLNDTVVIYDRIRENFRKMRKATPVD 232 AL HD LL +G+F++ ++F L ++AALL + G+S+NDTVV++DR+REN K + D Sbjct: 185 ALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRD 244 Query: 233 VVNRSINDTLSRTLMTSGLTLLVVVILYVFGGPALQPFALVLIIGILIGTYSSIYIAGAL 292 V+N S+N+TLSRT+MT TLL +V + ++GG ++ F ++ G+ GTYSS+Y+A + Sbjct: 245 VMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNI 304 Query: 293 SIKLGINR 300 + +G++R Sbjct: 305 VLFIGLDR 312
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 5e-06 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 22/159 (13%) Query: 50 INALLLTFGIFAAGYLARPLGGLIFGHIGDRFGRRHAFSHSIIIMAIGTMCIGLLPGYHH 109 A +LTF I G ++G + D+ G + +++ I C G + G+ Sbjct: 55 NTAFMLTFSI----------GTAVYGKLSDQLGIKR-----LLLFGIIINCFGSVIGF-- 97 Query: 110 IGITAPLLLMLLRIIQGVSLGGEIPGSSIFTAEHLFNQNRRGMAIGMIFMFITLGNTLGG 169 +G + LL++ R IQG P + + RG A G+I + +G +G Sbjct: 98 VGHSFFSLLIMARFIQGAG-AAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 170 FIGAVLTHYFTPEQMLSFGWRIPFIIGFSIGIIAYFMRK 208 IG ++ HY S+ IP I ++ + ++K Sbjct: 157 AIGGMIAHYIH----WSYLLLIPMITIITVPFLMKLLKK 191
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 121 bits (306), Expect = 5e-30 Identities = 81/262 (30%), Positives = 105/262 (40%), Gaps = 15/262 (5%) Query: 695 HAGYGDDTVRGGTGEDAIFGGAGDDDLRGGAGNDPLRGGQGEDSLRGGAGNDDLRGGAGN 754 H G GDD V G I+ G G D + + G + G G Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 755 DALRGGQGEDSLRGGAGDDDLRGGAGEDVLRGGQG---EDSLR------GGAGNDDLRGG 805 L+ E + G + + + E G+ D+L G D G Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGS 734 Query: 806 AGEDVLRGGQGEDSLRGGAGNDDLRGGAGEDVLRGGQGEDSLRGGAGNDDLRGGAGEDVL 865 D+ G G+D + G GND L G G D L GG G+D L GG GND L G AG + L Sbjct: 735 KFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYL 794 Query: 866 RGGQGEDSLR---GGAGDDDLRGGAGEDVLRGGQGDDVLDGGEGVDTVYAGQGNDAATFV 922 GG G+D + + L GG G D L G +G D+LDGGEG D + G GND + Sbjct: 795 NGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGND--IYR 852 Query: 923 VGQSEGIDQYY-GGSGEDTLRI 943 G G ED L + Sbjct: 853 YLSGYGHHIIDDDGGKEDKLSL 874 Score = 119 bits (299), Expect = 3e-29 Identities = 83/262 (31%), Positives = 107/262 (40%), Gaps = 26/262 (9%) Query: 674 VNAGSGDDVIQLGNGYANSTIHAGYGDDTV---RGGTGEDAIFG---------------G 715 + G GDD + L G AN I+AG G D V + TG I G G Sbjct: 614 SHLGDGDDKVFLSAGSAN--IYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLG 671 Query: 716 AGDDDLRGGAGNDPLRGGQGEDSLRGGAGNDDLRGGAGNDALRGGQGEDSLRGGAGDDDL 775 L+ + G+ + + + G + L G D Sbjct: 672 GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKF 731 Query: 776 RGGAGEDVLRGGQGEDSLRGGAGNDDLRGGAGEDVLRGGQGEDSLRGGAGNDDLRGGAGE 835 G D+ G G+D + G GND L G G D L GG G+D L GG GND L G AG Sbjct: 732 FGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGN 791 Query: 836 DVLRGGQGEDSLR---GGAGNDDLRGGAGEDVLRGGQGEDSLRGGAGDDDLRGGAGEDVL 892 + L GG G+D + + L GG G D L G +G D L GG GDD L+GG G D+ Sbjct: 792 NYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIY 851 Query: 893 RGGQG---DDVLDGGEGVDTVY 911 R G + D G D + Sbjct: 852 RYLSGYGHHIIDDDGGKEDKLS 873 Score = 100 bits (251), Expect = 2e-23 Identities = 75/263 (28%), Positives = 100/263 (38%), Gaps = 20/263 (7%) Query: 714 GGAGDDDLRGGAGNDPLRGGQGEDSLRGGAGNDDLRGGAGNDALRGGQGEDSLRGGAGDD 773 G GDD + AG+ + G+G D + + G A G + G Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVK 675 Query: 774 DLRGGAGEDVLRGGQGEDSLRGGAGNDDLRGGAGEDVLRGGQGEDSLRGGAGNDDLRGGA 833 L+ E + G+ + + + G + L G D G Sbjct: 676 VLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSK 735 Query: 834 GEDVLRGGQGEDSLRGGAGNDDLRGGAGEDVLRGGQGEDSLRGGAGDDDLRGGAGEDVLR 893 D+ G G+D + G GND L G G D L GG G+D L GG G+D L G AG + L Sbjct: 736 FTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLN 795 Query: 894 GGQGDD------------VLDGGEGVDTVYAGQGNDAATFVVGQSEGIDQYYGGSGEDTL 941 GG GDD VL GG+G D +Y +G D ++ EG D GG G D Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGAD----LLDGGEGDDLLKGGYGNDIY 851 Query: 942 RIELSAEQLENSDIITDLHGLND 964 R II D G D Sbjct: 852 RY----LSGYGHHIIDDDGGKED 870 Score = 68.8 bits (168), Expect = 1e-13 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 13/151 (8%) Query: 1099 EEVASVEEFNTGAGDDIVDLASYRYEYGDTVMNLGEGSDVGWGNIGEDQIFGGAGNDWLA 1158 + + SVEE D + + + + +G D+ GN G D+++G GND L+ Sbjct: 714 DNLYSVEELIGTTRADKFFGSKF-----TDIFHGADGDDLIEGNDGNDRLYGDKGNDTLS 768 Query: 1159 GNSGNDLLKGGLGDDRLEGNAGDDEIHVGQGDDIAMGHSGSDLFVFNLDEGNLGQNWVSG 1218 G +G+D L GG G+D+L G AG++ ++ G GDD S N+ G G + + G Sbjct: 769 GGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNS--LAKNVLFGGKGNDKLYG 826 Query: 1219 GEGEDSLQLSGSGGQNWVLHVENGGDGEVIH 1249 EG D L G G + + GG G I+ Sbjct: 827 SEGAD--LLDGGEGDDLL----KGGYGNDIY 851
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.0 bits (93), Expect = 5e-05 Identities = 46/311 (14%), Positives = 88/311 (28%), Gaps = 25/311 (8%) Query: 637 KVRAQSIRDHFREHTKGFRESTQRYAEQAKQREDGKIAGADTLEEMARLRTLALTQHVAA 696 +++ T + AE+A M + + Sbjct: 123 ADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADS-AKIKTL 181 Query: 697 TAAKNGFREIGKELGKANSTIDQLKETNKQSQETIKETEERVRNAKKETSAIHTKLEQAQ 756 A K EL KA + +T++ + + K + Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 757 EVIQRQNAEKRQDFQDLKSEITEYCERLKDNNQSLIKRLGALARSIPDQKEFEELRDDFT 816 + + L++ E + L+ + ++ E + D Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 817 SQHKKQVAFLDGLIVKLSAKVEIYQENSKEVTKL-----ISDAN---------------K 856 Q + A L L A E ++ E KL IS+A+ K Sbjct: 302 HQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 361 Query: 857 QVACANTALEGVEQTLDKIRKELKLTFSQLEEAHKKIKTAQAINTNQADQI----SELTA 912 Q+ + LE + + R+ L+ EA K+++ A ++ + EL Sbjct: 362 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEE 421 Query: 913 QLTLLTQPKAE 923 L + KAE Sbjct: 422 SKKLTEKEKAE 432 Score = 33.5 bits (76), Expect = 0.006 Identities = 28/259 (10%), Positives = 67/259 (25%), Gaps = 10/259 (3%) Query: 730 TIKETEERVRNAKKETSAIHTKLEQAQEVIQRQNAEKRQDFQDLKSEITEYCERLKDNNQ 789 E ++ +T + E+ K D + ++ + L + Sbjct: 36 NTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELS 95 Query: 790 SLIKRLGALARSIPDQKEFEELRDDFTSQHKKQVAFLDGLIVKLSAKVEIYQENSKEVTK 849 + ++L +S+ ++ + + + +K + SAK + + Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAK----IKTLEAEKA 151 Query: 850 LISDANKQVACANTALEGVEQTLDKIRKELKLTFSQLEEAHKKIKTAQAINTNQADQISE 909 ++ + A K L+ + LE +++ A N + S Sbjct: 152 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSA 211 Query: 910 LTAQLTLLTQPKAEEFQLKVVDTTLSRGDNMKRTGDLFEIVVKALKENQKLNGTNKGKIL 969 L A D + M + + E L + L Sbjct: 212 KIKTLEAEKAALAARKA----DLEKALEGAMNFSTADSAKIKTLEAEKAAL--EARQAEL 265 Query: 970 ELLRDDLQKHKENLMSDSD 988 E + + Sbjct: 266 EKALEGAMNFSTADSAKIK 284 Score = 32.7 bits (74), Expect = 0.010 Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 11/261 (4%) Query: 656 ESTQRYAEQAKQREDGKIAGADTLEEMARLRTLALTQHVA-ATAAKNGFREIGKELGKAN 714 E ++ + A L AL + +TA + + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 715 STIDQLKETNKQSQETIKETEERVRNAKKETSAIHTKLEQAQEVIQRQNAEKRQDFQDLK 774 + +L++ + + +++ + E +A+ + + Q NA ++ +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 775 SEITEYCERLKDNNQSLIKRLGALARSIPDQKEFEELRDDFTSQHKKQVAFLDGLIVKLS 834 + ++L+ +Q L ++ S ++ D K+ A L + Sbjct: 320 ASREAK-KQLEAEHQKLEEQNKISEAS---RQSLRRDLDASREAKKQLEAEHQKLEEQNK 375 Query: 835 AKVEIYQENSKEVTKLISDANKQVACANTALEGVEQTLDKIRKEL----KLTFSQLEEAH 890 Q +++ +A KQV A L+K+ KEL KLT + E Sbjct: 376 ISEASRQSLRRDLDASR-EAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQ 434 Query: 891 KKIKT-AQAINTNQADQISEL 910 K++ A+A+ A Q EL Sbjct: 435 AKLEAEAKALKEKLAKQAEEL 455
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.9 bits (88), Expect = 4e-05 Identities = 23/182 (12%), Positives = 60/182 (32%), Gaps = 18/182 (9%) Query: 94 NAQAEISNLQQLLNNKELELDTWQQNHQRLITQHESLTTIHQELTAQHQTLITEQQLKTE 153 S +++ + + + + N + + + A+ +++ Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER-------LTVLARINRYENLSRVEKS 235 Query: 154 QLTALEQL-------HHSSHAQQQQYI---NELSSQLAEEKEIFKKAIEHIQENYQLHCE 203 +L L H+ Q+ +Y+ NEL ++ ++I + I +E YQL + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI-ESEILSAKEEYQLVTQ 294 Query: 204 QLETHHQQKISELKTNLSSYQANVQELTSDLQHLQQQLNQTKTINNLSEYVFNQLNNQTE 263 + K+ + N+ + + Q + + + L + + E Sbjct: 295 LFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354 Query: 264 HL 265 L Sbjct: 355 TL 356 Score = 28.6 bits (64), Expect = 0.033 Identities = 23/173 (13%), Positives = 57/173 (32%), Gaps = 15/173 (8%) Query: 136 ELTAQHQTLITEQQLKTEQLT-----ALEQLHHSSHAQQQQYINELSSQLAEEKEIFKKA 190 L A+ TL T+ L +L L + + + + +E Q E+E + Sbjct: 129 ALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE-VLRL 187 Query: 191 IEHIQENYQLHCEQLETHHQQKISELKTNLSSYQANVQELTSDLQHLQQQLNQTKTINNL 250 I+E + Q + + + + + A + + + + +L+ ++ + Sbjct: 188 TSLIKEQFSTWQNQK-YQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHK 246 Query: 251 SEYVFNQLNNQTEHLTQLIKDHQHQQNADLIALQNQQATVNKELTHLALEQQQ 303 + + Q + +L ++Q + E+ E Q Sbjct: 247 QAIAKHAVLEQENKYVEA--------VNELRVYKSQLEQIESEILSAKEEYQL 291
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 70.0 bits (171), Expect = 5e-17 Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 17/215 (7%) Query: 6 KKQRPSADITRSNILQAAQKLFASHGFAGTSISMIAKKANINQSLIYHHFTNKHDLWCKA 65 +K + A TR +IL A +LF+ G + TS+ IAK A + + IY HF +K DL Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDL-FSE 61 Query: 66 KKEFITPDLSKESPPSTQLQSLALYDFIKTIITIRFNIYKHNPDMGRML--LWQFLEFND 123 E ++ + ++ I+ ++ ++ EF Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 124 DKPLLEDS-----SPMMTTILDCITQFKNEGEIHPRYINYTASQLLFYIFTNASSLFTSL 178 + +++ + I + + + A+ ++ + L Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMR-------GYISGL 174 Query: 179 YGAWFNKDEMTEEFHKQYADFIITAVYQSLASAPT 213 W + + K+ A + + + PT Sbjct: 175 MENWLFAPQSFDL--KKEARDYVAILLEMYLLCPT 207
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 3e-04 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 13/129 (10%) Query: 517 YDDWLRQRSVLSQGQSQAQAQ---AQAQIQNSIKNPAGSQVENCAV---NKNNTMDKSGV 570 + W Q+ + +A+ A+I + + K V Sbjct: 195 FSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAV 254 Query: 571 KEQKKKLSGKLSFKEKQELEALPAKIEQLEHE--QEELNLAMANGDFYQQESDVIRQATT 628 EQ+ K + EL +++EQ+E E + + F + D +RQ T Sbjct: 255 LEQENKYV-----EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 629 RMATLEEAL 637 + L L Sbjct: 310 NIGLLTLEL 318
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 33.5 bits (76), Expect = 7e-04 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 35/165 (21%) Query: 31 DATAFNGVKHELLENKG---------KVSNIFNAFIMQKLESAGVKTHFIEKISDHESLV 81 + F+GV +++ NK K NI + S G THF E I + Sbjct: 520 NTLDFSGVTNKVNINKLITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRIN 579 Query: 82 KPLEMLRVECVVRNIAAGSLSKRYGIEEGSELKAPIFEFFLKDDDLGDPM-INDEHI--- 137 +R+E R+I +G G++ K I +F+ + D I + I Sbjct: 580 ----TVRLETGTRSIYSG------GVKFKGGEKLVINDFYYAPWNYFDARNIKNVEITNK 629 Query: 138 IAFG-----WGTEEDIKMMRELTIKVNHVLN-----DLFLQGDIL 172 +AFG WGT + M LT+ N V++ +L +QGD + Sbjct: 630 LAFGPQGSPWGTAK--LMFNNLTLGQNAVMDYSQFSNLTIQGDFV 672
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 143 bits (361), Expect = 1e-46 Identities = 47/144 (32%), Positives = 79/144 (54%) Query: 10 KTAEISKELNKLLATYQVFYMNVRGFHWNIKGQQFFELHTKFEEIYNDLLTKVDEIAERI 69 + LN L+ + + Y + FHW +KG FF LH KFEE+Y+ VD IAER+ Sbjct: 9 NQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERL 68 Query: 70 LTLGEQPLHAYSQYAKHSEISEAINVVDAENSVKSLLNSFSALIKLQRHILKVSGDAEDE 129 L +G QP+ +Y +H+ I++ N A V++L+N + + + ++ ++ + +D Sbjct: 69 LAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDN 128 Query: 130 GTSSLMGDYIKEQEKLIWMFLAYL 153 T+ L I+E EK +WM +YL Sbjct: 129 ATADLFVGLIEEVEKQVWMLSSYL 152
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 29.4 bits (66), Expect = 0.026 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 384 PLWLQAL----DSMTYWGTAVVVLLFLGLFWLAWRLRREHVRRLEDQAVLR 430 PL + L D++ +G +++ L G LR+E R + +L Sbjct: 210 PLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQEKRRVSFHRRLLH 260
>SALVRPPROT#Salmonella virulence-associated 28kDa protein signature. Length = 241 Score = 31.3 bits (70), Expect = 0.005 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 10/88 (11%) Query: 122 LFSEQYPVQHTKIPTLKYVVQYVKAIAGEKAGFQIEIKTDPAHPHQSAT----PKQFATA 177 LFSE PV K+ ++ VVQ + G A F + IK D + SA+ +QF Sbjct: 125 LFSEDSPVDKWKVTDMEKVVQQARVSLG--AQFTLYIKPDQENSQYSASFLHKTRQFIEC 182 Query: 178 LAKLLKAEGITD----RTEVQAFDWPCL 201 L L G+ ++V +W L Sbjct: 183 LESRLSENGVISGQCPESDVHPENWKYL 210
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.4 bits (79), Expect = 9e-04 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 11/146 (7%) Query: 59 GFDKGDLGLVLAAVSIAYGLSK-FVMGTISDRSNPRTFLTVGLLLSALINLFFGAASISM 117 +D +G+ LAA I + L++ + G ++ R R L +G++ + A+ Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 118 SSIPLMFCLMFLNGWFQGMGWPACGRTMVHWFSVGERGTKMSIWNVAHNVGGGLIGPLAI 177 + P+M L G+G PA + M+ ER ++ A ++GPL Sbjct: 302 MAFPIMVLLASG-----GIGMPAL-QAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL-- 353 Query: 178 MGLALFSAWQSLFYFPALIAIVVAIF 203 + A+++A S+ + I A Sbjct: 354 LFTAIYAA--SITTWNGWAWIAGAAL 377 Score = 32.9 bits (75), Expect = 0.002 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 7/156 (4%) Query: 63 GDLGLVLAAVSIAYGLSKFVMGTISDRSNPRTFLTVGLLLSALINLFFGAASISMSSIPL 122 G++LA ++ V+G +SDR R L V L +A+ A Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW----- 97 Query: 123 MFCLMFLNGWFQGMGWPACGRTMVHWFSVGERGTKMSIWNVAHNVGGGLIGPLAIMGLAL 182 + + + G G + ER + + A G G++ + GL Sbjct: 98 VLYIGRIVAGITGATGAVAGAYIADITDGDER-ARHFGFMSA-CFGFGMVAGPVLGGLMG 155 Query: 183 FSAWQSLFYFPALIAIVVAIFVFFSLRDTPQSVGLP 218 + + F+ A + + + F L ++ + P Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRP 191
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 59.8 bits (145), Expect = 5e-12 Identities = 61/330 (18%), Positives = 134/330 (40%), Gaps = 24/330 (7%) Query: 44 GFLYVLPTLLTAIASPFWGKISDKINKKSALLRAQLGLSISFLIVAFSSGYLSLFILSLC 103 G L L L+ +P G +SD+ ++ LL + G ++ + I+A + L+I Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI-GRI 104 Query: 104 LQGLLGGTLAAANAYLATTSHRQQLSQLLNLTQFSARAAFLIAPIIIGFLINLFSPLSVY 163 + G+ G T A A AY+A + + ++ + P++ G + FSP + + Sbjct: 105 VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPF 163 Query: 164 FLLALITFISAIIIYFYVPKDKDKDKNKNYDHDKITPNSKPQSIDAAINILPYYCLLAAS 223 F A + ++ + F +P+ K + + + + P + + + L+A Sbjct: 164 FAAAALNGLNFLTGCFLLPESH-KGERRPLRREALNPLASFRWARG---MTVVAALMAVF 219 Query: 224 FVFNFSTVISFPYFITLLQAHFNVHSGLILGLL--FGLPHAVYLISIFSLQKYRQQPSQQ 281 F+ + ++ + F+ + I L FG+ H++ I + ++ Sbjct: 220 FIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG--PVAARLGER 277 Query: 282 PWIFTG------ALILLAFSLYWQCVTTGFFTLIILRIVMGAAITLGFISLNRMIATLKL 335 + G ILLAF T G+ I+ ++ I + +L M++ Sbjct: 278 RALMLGMIADGTGYILLAF------ATRGWMAFPIMVLLASGGIGMP--ALQAMLSRQVD 329 Query: 336 QQQEGKVFGWLDSISKWAGVCAGLIAGFSY 365 ++++G++ G L +++ + L+ Y Sbjct: 330 EERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
>PF04183#IucA / IucC family Length = 580 Score = 121 bits (305), Expect = 3e-31 Identities = 61/310 (19%), Positives = 104/310 (33%), Gaps = 36/310 (11%) Query: 168 LEYDHIAAFLD-HPLYPTARAKLGFNPNDLYNYTTEFRAEFKLNWIAIPKSLSTLSGTLP 226 L D + L HP + + + G+ L Y E+ F+L+W+A+ + Sbjct: 124 LNADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRCDNE 183 Query: 227 I-------------FWPSFSSVGLNPTLQQTHTLLPVHPFLI-HRLQDLLDEQGIKLKII 272 + + FS V L LPVHP+ ++ + +++ Sbjct: 184 MDIHQLLTAAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMV 243 Query: 273 KAPVSFLTVNPTLSIRSL-SIKNYSHFHLKLPLDIRTLSAKNIRTIKASTINDGHQVQSL 331 S+R+L + +KLPL I S R I I G Sbjct: 244 SLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSC--YRGIPGRYIAAGPLASRW 301 Query: 332 LESIRLQDPELKENIFLTTEHTGMHINSHP--------------MLAFILRQYPSQL--N 375 L+ + D L ++ + SH ML I R+ P + Sbjct: 302 LQQVFATDATLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLKP 361 Query: 376 NHWIIPIAALCAK-NNGQLIIQHLINDHFNKDTIQFIKNYFDLTIHTHLNLWLIYGITLE 434 + + +A L N Q + I D D ++ F + + +L YG+ L Sbjct: 362 DESPVLMATLMECDENNQPLAGAYI-DRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALI 420 Query: 435 ANQQNSLLII 444 A+ QN L + Sbjct: 421 AHGQNITLAM 430
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 58.4 bits (141), Expect = 3e-12 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 181 GGESLLPPSYLQKLLIHL-QKYKYYPPFALRRQITGEAKVNIRLTCQGQVESYQLVKKTG 239 + P + + L + YP A +I G+ KV +T G+V++ Q++ Sbjct: 143 TAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKP 202 Query: 240 SRLLDNAVRQMLKQANPFPPAKVCQVAFNVVVPIEFKI 277 + + + V+ +++ P + +VV I FKI Sbjct: 203 ANMFEREVKNAMRRWRYEPG----KPGSGIVVNILFKI 236
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 129 bits (326), Expect = 2e-37 Identities = 71/274 (25%), Positives = 123/274 (44%), Gaps = 20/274 (7%) Query: 41 KRVITLEHRYTEMVLSLGVIPIGVADIKSYQEYDGVDEKKL-KGVESVGRRAAPNLELIA 99 R++ LE E++L+LG++P GVAD +Y+ + V E L V VG R PNLEL+ Sbjct: 36 NRIVALEWLPVELLLALGIVPYGVADTINYRLW--VSEPPLPDSVIDVGLRTEPNLELLT 93 Query: 100 SLKPDLIIGAKLRNASVYPVLSSISPSLLFNYIQMPNGKEQPLAGLFAEFNTIAKLLGKT 159 +KP ++ + +L+ I+P FN + +QPLA +A LL Sbjct: 94 EMKPSFMVWS-AGYGPSPEMLARIAPGRGFN----FSDGKQPLAMARKSLTEMADLLNLQ 148 Query: 160 QQAKKIIVNYNKTVTEAKAIIDQLKQQGLLKSDRVAIAQFLPGSSRLRLLTTDSVAIEVL 219 A+ + Y + K + + LL + + + + +S+ E+L Sbjct: 149 SAAETHLAQYEDFIRSMKPRFVKRGARPLL------LTTLI-DPRHMLVFGPNSLFQEIL 201 Query: 220 KSVGLKAAWPVKGGPSTLGYRTVGIQRLSTLGQTNVFYFNERADDSYLKNTLSNPLWLNL 279 G+ AW +G + G V I RL+ +V F+ + + ++ PLW + Sbjct: 202 DEYGIPNAW--QGETNFWGSTAVSIDRLAAYKDVDVLCFDH-DNSKDMDALMATPLWQAM 258 Query: 280 PFVKSALTYRFSQQIWPWGGPVALEKFINEVVDN 313 PFV++ R +W +G ++ F+ V+DN Sbjct: 259 PFVRAGRFQRVP-AVWFYGATLSAMHFV-RVLDN 290
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 58.5 bits (141), Expect = 4e-12 Identities = 39/187 (20%), Positives = 57/187 (30%), Gaps = 10/187 (5%) Query: 40 AQNSETASHIKLDEPAEELETPAKETATVEAAAPAPEELETPAEETATAEAAAPAPEELE 99 A + K + E T + A E T T E A E E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 100 TP---AEETATAEAAAPAPEELETPTEETATAEAAAPAPEELET------PAEETATAEA 150 T +ETAT E A E E E +P E+ ET PA E Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 151 AAPAPEELETPAEETATAEAAAPAPEELETPAEETATAEAAAPAPE-ELETPAEETATAE 209 + T A+ A+ + E+ T + T + PE + T +E Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 210 AAAPVEE 216 ++ + Sbjct: 1215 SSNKPKN 1221 Score = 57.8 bits (139), Expect = 6e-12 Identities = 37/188 (19%), Positives = 58/188 (30%), Gaps = 18/188 (9%) Query: 35 EIKIDAQNSETASHIKLDEPAEELETPAKETATVEAAAPAPEELETPAEETATAEAAAPA 94 +K + Q +E A E E T KETATVE A E E E +P Sbjct: 1075 NVKANTQTNEVAQ--SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132 Query: 95 PEELET------PAEETATAEAAAPAPEELETPTEETATAEAAAPAPEELETPAEETATA 148 E+ ET PA E + T + A+ + E+ T + T Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG 1192 Query: 149 EAAAPAPE-ELETPAEETATAEAAAPAPEELETPAEETATAEAAAPAPEELETPAEETAT 207 + PE + T +E++ + + P +E + Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSN---------KPKNRHRRSVRSVPHNVEPATTSSND 1243 Query: 208 AEAAAPVE 215 A + Sbjct: 1244 RSTVALCD 1251 Score = 45.8 bits (108), Expect = 8e-08 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 5/133 (3%) Query: 87 TAEAAAPAPEELETPAEETATAEAAAP--APEELETPTEETATAEAAAPAPEELETPAEE 144 T P + + P+ + E A AP P + T E A ++ E+ E Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQ-ESKTVE 1052 Query: 145 TATAEAAAPAPEELETPAEETATAEAAAPAPEELETPAEETATAEAAAPAPEELETPAEE 204 +A + E E + +A E ++ +E T +E EE Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE--KEE 1110 Query: 205 TATAEAAAPVEEA 217 A E E Sbjct: 1111 KAKVETEKTQEVP 1123 Score = 42.4 bits (99), Expect = 1e-06 Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 13/170 (7%) Query: 29 TRKPHTEIKIDAQNSETASHIKLDEPAEELETPAKETATVEAAAPAPEELETPAEETATA 88 T K K+ +Q S + +P E PA+E + T A+ A Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAE---PARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 89 EAAAPAPEELETPAEETATAEAAAPAPEELETPTEETATAEAAAPAPEELETPAEETATA 148 + + E+ T + T +E P T P + + Sbjct: 1173 KETSSNVEQPVTESTTVNTG------NSVVENPENT--TPATTQPTVNSESSNKPKNRHR 1224 Query: 149 EAAAPAPEELETPAEETATAEAAAPAPEELETPAEETATAEAAAPAPEEL 198 + P +E + A +L + ++A A A Sbjct: 1225 RSVRSVPHNVEPATTSSNDRSTVALC--DLTSTNTNAVLSDARAKAQFVA 1272
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 119 bits (301), Expect = 1e-31 Identities = 103/455 (22%), Positives = 200/455 (43%), Gaps = 19/455 (4%) Query: 5 STSRRSHKTMLPWLVSFGLFMENLDSTVINTAIPQMAHTLAVNPLSLKLAVTSYLLSLVL 64 S S H +L WL F L+ V+N ++P +A+ P S T+++L+ + Sbjct: 6 SQSNLRHNQILIWLC-ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSI 64 Query: 65 FMPISGYLADRLGTKRIFISAITVFTFGSLLCGLSTS-LTMLIIARIIQGIGGAMMVPTG 123 + G L+D+LG KR+ + I + FGS++ + S ++LI+AR IQG G A Sbjct: 65 GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALV 124 Query: 124 RLILVKTFEKSAMINALSNMAVIGQIGPAFGPLLGGALTSYLSWHWVFLINLP-IGVLGI 182 +++ + K A + I +G GP +GG + Y+ HW +L+ +P I ++ + Sbjct: 125 MVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITV 182 Query: 183 FFAYRWIGENHTAQTPSFDIKGFILFGLGLVTINLFLSLADNRLISLKLLEVSLAIGIIS 242 F + + + + FDIKG IL +G+V LF + L + ++S Sbjct: 183 PFLMKLLKKEVRIKGH-FDIKGIILMSVGIVFFMLFTTSY---------SISFLIVSVLS 232 Query: 243 LVTYYFYAKNKTYPMISFSPFKTHTFKVAVLGSLWIRITVNSLPFILPLLLQINFGYSAF 302 + + + + T P + K F + VL I TV ++P +++ S Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 303 ISG-LLILPYGLGLIGAKFIIKSLLRYLGYRRILLINPCIIALIVLSFAYLNPMSSIFLI 361 G ++I P + +I +I L+ G +L I +++ L+ ++L ++ + + Sbjct: 293 EIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFM 351 Query: 362 AFLCFFAGLVCSVQFSSMQTLNYIDIQDQEKSQATSLASVFQQLAMNLGVCLTA--LSLE 419 + F S + + T+ ++ QE SL + L+ G+ + LS+ Sbjct: 352 TIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411 Query: 420 FFNVPLQPQKALISLHAFHSSFIFLALVAASSTIV 454 + L P + S + + + + + + S +V Sbjct: 412 LLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLV 446
>SSPAKPROTEIN#Invasion protein B family signature. Length = 133 Score = 29.1 bits (65), Expect = 0.008 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 30 ELINRRLTGNNYHVYINPERVVDEEAIAVHGITNE-FLQDKPVFAQIANEFYHYIQ 84 ++N L +Y + E +E + + + + ++ D VFA+I +EFY ++ Sbjct: 72 NILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRME 127
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 231 bits (590), Expect = 1e-75 Identities = 87/344 (25%), Positives = 168/344 (48%), Gaps = 12/344 (3%) Query: 3 TDLLSQDEIDALLHGVDGSESAEEVEVDPDAPVSI---DFNSQERIVRGRMPTLEMVNER 59 T++LSQDEID LL + +++ E I DF ++ + +M TL +++E Sbjct: 2 TEVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHET 61 Query: 60 FARTFRTTLFNLLRSIPDLSVDGIQMHKFSDYMHTLFVPTSLNMVKMRPLRGNCLFVFDA 119 FAR T+L LRS+ + V + + +++ ++ P++L ++ M PL+GN + D Sbjct: 62 FARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDP 121 Query: 120 RLIFILVDNFFGSDGRFHAKIEGREFTPTELRIVMLLLETIFIDYKEAWAPVLDVNFEYQ 179 + F ++D FG G+ R+ T E ++ ++ I + +E+W V+D+ Sbjct: 122 SITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLG 179 Query: 180 SSEVNPAMANIVGPTEAIFVSTFQIELNGGGGKLQIGFPYPMIEPIRDILDAG--IQSDS 237 E NP A IV P+E + + T + ++ G + PY IEPI L + S Sbjct: 180 QIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVR 239 Query: 238 TDIDTRWIQSLHHEIAGAPLRVTADLAKVELSAREIMQLKVGQIIPFE---MPEEVQVFV 294 T+++ L +++ + V A++ + LS R+I+ L+VG II + + + + Sbjct: 240 RSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSI 299 Query: 295 QDTPAYMAKLGQANGNLAIELLKEIDKKTGAAIPFQVRSHEEEQ 338 + ++ + G +A ++L+ I+ + F+ S +EE+ Sbjct: 300 GNRKKFLCQPGVVGKKIAAQILERIESTSQED--FEELSADEEE 341
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 9e-05 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 10/78 (12%) Query: 186 TALVVDDSLIARKQVKKALDTIGVKSILMRNGREALDYLINVLPGAGGDITQKYLMVIAD 245 T LV DD R + +AL G + N ++ V+ D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDL----------VVTD 54 Query: 246 VEMPEIDGYAFIKACREH 263 V MP+ + + + ++ Sbjct: 55 VVMPDENAFDLLPRIKKA 72
>SECA#SecA protein signature. Length = 901 Score = 35.2 bits (81), Expect = 7e-07 Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 4 CTCGSGKKHKKCC 16 C CGSGKK+K+C Sbjct: 885 CPCGSGKKYKQCH 897
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 742 bits (1918), Expect = 0.0 Identities = 306/1041 (29%), Positives = 536/1041 (51%), Gaps = 41/1041 (3%) Query: 5 DLFIKRPVLACVLSLVIFLTGLIAYNKLAVRQYPAVSANVVTISTSYSGASASLVEAFVT 64 + FI+RP+ A VL++++ + G +A +L V QYP ++ V++S +Y GA A V+ VT Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62 Query: 65 TPLEQALQGISGVDYVSSVS-SAGNSRITVSLNLNADLYQALIEINNDLTPVLKKLPSGV 123 +EQ + GI + Y+SS S SAG+ IT++ D A +++ N L LP V Sbjct: 63 QVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEV 122 Query: 124 DTPVIKEGDSNSTPMMIISFSSSK--LTPEAINDYLQRVVQPQLANLSGVAQANILGPRV 181 I S+S+ +M+ F S T + I+DY+ V+ L+ L+GV + G + Sbjct: 123 QQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ- 181 Query: 182 YAMRLWLNPAKMAALGVTTEDVSTALAANDLFAQAGSIST------NSQVININIESSLN 235 YAMR+WL+ + +T DV L + AG + +I ++ Sbjct: 182 YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFK 241 Query: 236 SAAQFNNLVIKSQQD-QYVRLSDIGYAELGAQTKASSLYVNGKPAVGVGIIAKSDANPLM 294 + +F + ++ D VRL D+ ELG + +NGKPA G+GI + AN L Sbjct: 242 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 301 Query: 295 VANTVKNEVAEIQKQLPQGLSVRIARDSSSYIQDSLSEVSHTVMVAIVIVIAVVLLFLGS 354 A +K ++AE+Q PQG+ V D++ ++Q S+ EV T+ AI++V V+ LFL + Sbjct: 302 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 361 Query: 355 FRALMIPLVTIPVSLVGTFALMYLLGYSINVLTLLAFVLAIGLVVDDAIVVLENVHRYI- 413 RA +IP + +PV L+GTFA++ GYSIN LT+ VLAIGL+VDDAIVV+ENV R + Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMM 421 Query: 414 EQGFTPFKAALKGAREIRFAIIAMTLTLAAVYAPIGFSTGITGSLFREFAFSLAASVILS 473 E P +A K +I+ A++ + + L+AV+ P+ F G TG+++R+F+ ++ +++ LS Sbjct: 422 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 481 Query: 474 GIVALTLSPMMCARMMRA-----HHQPAGWQLKIEVCLTRLRDYYSLLLNKVFNNKVNVL 528 +VAL L+P +CA +++ H G+ ++Y+ + K+ + L Sbjct: 482 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 541 Query: 529 IIAGTVIVCGGIYIIPLVKNSTLAPKEDQNTVIGIVQGSMAASVVNTEAYTSKLRE--LA 586 +I ++ G+ ++ L S+ P+EDQ + ++Q A+ T+ ++ + L Sbjct: 542 LIY--ALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 587 SKVSGVENVTVING---AGGDQSNAMLMVQLASKSQRS---LSAERIAGQLNKAAARIPG 640 ++ + VE+V +NG +G Q+ M V L +R+ SAE + + +I Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 641 AKAMFVLPPSLPTSHD-----NYDIEFVIKTNGDYAELETHVNKILQAIHKN-AGFGRVM 694 FV+P ++P + +D E + + + L N++L ++ A V Sbjct: 660 G---FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 695 TDLQFNKPEYNVTIQRDMAARLGVSVSGIASVLTNALAEPQSSEFVNNGLSYYVIPQVIA 754 + + ++ + + ++ A LGVS+S I ++ AL ++F++ G + Q A Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 755 SGQGSITGLNQLYVTAESGAKIPLRDLIKVKMTVNPSSLNHFQSQRSVTIQATLSHRYST 814 + +++LYV + +G +P L + S+ IQ + S+ Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 815 EQALNFLEMIAKKDLTAQMSYATSGNTRQYLEESSSVYFIFIAALLFIYLSLSAQFESFI 874 A+ +E +A K L A + Y +G + Q + + + + ++L L+A +ES+ Sbjct: 837 GDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWS 895 Query: 875 DPLIILMSVPFSIAGALGTLFLIGGSLNIYTEIGLVTLIGLIAKHGILIVEFANQSQ-KS 933 P+ +++ VP I G L L ++Y +GL+T IGL AK+ ILIVEFA K Sbjct: 896 IPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE 955 Query: 934 GESLLVAIKQSARVRFRPILMTTAAMVLGAVPLVFASGAGSEARYQLGWVIVGGMMIGTM 993 G+ ++ A + R+R RPILMT+ A +LG +PL ++GAGS A+ +G ++GGM+ T+ Sbjct: 956 GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATL 1015 Query: 994 MTLLVLPLMYYLVNTAKTVFK 1014 + + +P+ + ++ + FK Sbjct: 1016 LAIFFVPVFFVVI---RRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 3e-09 Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 69 TLKAQVAGTVTRVAFQSGDKVKQGQLLVSLDSTTAKGQLDKAEADYHLSLLTYQRDQSLF 128 +K V + + G+ V++G +L+ L + A+ K ++ + L R Q L Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 129 KNHVLSEQELDQVKFTVKANWALLEQAQ 156 ++ + +L ++K + + + + + Sbjct: 158 RS--IELNKLPELKLPDEPYFQNVSEEE 183 Score = 40.2 bits (94), Expect = 9e-06 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 17/190 (8%) Query: 99 DSTTAKGQLDKAEADYHLSLLTYQRDQSLFKNHVLSEQELDQVKFTVKANWALLEQAQSA 158 + K QL++ E++ + YQ LFKN +L + L Q + L + + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK--LRQTTDNIGLLTLELAKNEER 324 Query: 159 YNKTQVKAPFNGNI-GISDITVGSYLDSGDTIVSLQNLDH-LWVDFNVSSQDSLQVKIDE 216 + ++AP + + + T G + + +T++ + D L V V ++D + + + Sbjct: 325 QQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384 Query: 217 IVDITTQAEPMQIA---SGKVVAIEPQINSDTGT----LTLRAQINNT------HYQLLP 263 I +A P GKV I D + + N + L Sbjct: 385 NAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSS 444 Query: 264 GQLVSVNLYT 273 G V+ + T Sbjct: 445 GMAVTAEIKT 454
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 48.4 bits (115), Expect = 5e-09 Identities = 42/222 (18%), Positives = 72/222 (32%), Gaps = 48/222 (21%) Query: 7 LTVMTTLLISASALAAKPGA---YIGLNLGYGGMDTAQLTKNSFRNEASSSASLRGFAGR 63 + + L A+ A P Y G LG+ N+ + F G Sbjct: 6 IAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF-INNNGPTHENQLGAGAFGG- 63 Query: 64 INAGYLWSQSSLNYGIELGYATYANNQYSALGKNGEKYNFTYKGYNIDLLGIAQYNFNPN 123 Q + G E+GY Y +NG YK + L Y + Sbjct: 64 -------YQVNPYVGFEMGYDWLGRMPYKGSVENG-----AYKAQGVQLTAKLGYPITDD 111 Query: 124 WNIFAKVGIAYASQTTSGS-------SEFSHMFAN--KGRLLPKVALGLGYEFTNGIGLN 174 +I+ ++G T + + S +FA + + P++A L Y++TN IG Sbjct: 112 LDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIG-- 169 Query: 175 LTASHIFGNQSTFDGNNNQTIKNNLNKVSPVDMVTVGISYNF 216 + + M+++G+SY F Sbjct: 170 --------------------DAHTIGTRPDNGMLSLGVSYRF 191
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 48.8 bits (116), Expect = 4e-09 Identities = 45/216 (20%), Positives = 70/216 (32%), Gaps = 31/216 (14%) Query: 5 IKLTAIT---ALLISASTLATKPGA---YIGLNLGYGGMDTPNLDLTKINNIANDSHSTR 58 +K TAI AL A+ P Y G LG+ D INN + Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYH----DTGFINNNGPTHENQ- 55 Query: 59 GLAGSINAGYLWNKGALNYGFELGYSTYANNQYTAVSVGKKYNFTYSGSSLDLLGVVQYN 118 L GY N GFE+GY + + + G L Y Sbjct: 56 -LGAGAFGGYQVNPY---VGFEMGYDWLG--RMPYKGSVENGAYKAQGVQLTAKL--GYP 107 Query: 119 INPNWNIFGKAGLSYVSQKTTGDGILSLAADSKSKMRPKFALGAGYGFDNGIGLNVMASH 178 I + +I+ + G T + + + + P FA G Y + Sbjct: 108 ITDDLDIYTRLGGMVWRADTKSNVYGK---NHDTGVSPVFAGGVEY--------AITPEI 156 Query: 179 TFGTKPQVSNNIISIKDDVNKVAPIDMITVGITYNF 214 + Q +NNI + M+++G++Y F Sbjct: 157 ATRLEYQWTNNIGD-AHTIGTRPDNGMLSLGVSYRF 191
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 40.3 bits (94), Expect = 1e-06 Identities = 40/176 (22%), Positives = 54/176 (30%), Gaps = 27/176 (15%) Query: 5 IKLTAIT---ALLISASALAAKPGA---YIGLNLGYGGMDTPSVNFKNKYPGVHSYSHSS 58 +K TAI AL A+ A P Y G LG+ F N H + Sbjct: 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWS--QYHDTGFINNNGPTHENQLGA 58 Query: 59 RGFAGRINAGYLWNQGSLNYGVELGYATYANSKYSVTNKDDTRTLKYSGTNIDLLGVIQY 118 F G Q + G E+GY Y K Y + L + Y Sbjct: 59 GAFGGY--------QVNPYVGFEMGYDWLGRMPY----KGSVENGAYKAQGVQLTAKLGY 106 Query: 119 NFTPNWNIFAKAGLAYVTQKTSGSNAFKLEFESNNKVLSEVALGAGY----EFALR 170 T + +I+ + G T + K + V A G Y E A R Sbjct: 107 PITDDLDIYTRLGGMVWRADTKSNVYGK---NHDTGVSPVFAGGVEYAITPEIATR 159
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 27.4 bits (60), Expect = 0.008 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 41 HQRLSTHTSPDVISQELIR-EHNIQVSESTI-YRYIYDDRERGGELYKNL 88 H +L T DV + EL++ E + SE + +R +YD R++ LY NL Sbjct: 317 HLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAKLLYNNL 366
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 30.8 bits (70), Expect = 5e-04 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 30 TKIQVVNSIAEETGLPKKDVLQVFESLRILISRHMKKRGSGEFTIPEVGVKIRRSKKAAT 89 K ++ +AE T L KKD +++ +S ++ K + + G ++AA Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAK--GEKVQLIGFG-NFEVRERAAR 59 Query: 90 KARTIISPFNGEEIHVPAKPARTTVKVTALKALKETV 126 K R +P GEEI + A A KALK+ V Sbjct: 60 KGR---NPQTGEEIKI---KASKVPAFKAGKALKDAV 90
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 376 bits (968), Expect = e-132 Identities = 135/363 (37%), Positives = 209/363 (57%), Gaps = 10/363 (2%) Query: 1 MGRATCVLLSRSALLHNLKKVREKAPNSKILAMVKAYGYGHSFEVAKYLDKKVDGFGVAA 60 M R L AL NL VR+ A ++++ ++VKA YGH E DGF + Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN 60 Query: 61 IEEAIQLREQGICSPIVLMEGVFSPEELRLVENYNFSIVIHCQEQVDWLHHHALVAKSVD 120 +EEAI LRE+G PI+++EG F ++L + + + + +H Q+ L + A + +D Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQN-ARLKAPLD 119 Query: 121 VWLKLDTGMGRLGFDCTSGKCLDYLSAIYLSLKKSNKVGQLGLMSHFACADEPYHQLNSR 180 ++LK+++GM RLGF D + ++ L+ VG++ LMSHFA A+ P Sbjct: 120 IYLKVNSGMNRLGFQ------PDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG-- 171 Query: 181 QISAFQQVRKKFPGPYSCVNSAAIFNFSYERYDWVRPGIMLYGISPFAD-KNGVDLELQP 239 ++ +Q + S NSAA +DWVRPGI+LYG SP ++ + L+P Sbjct: 172 AMARIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRP 231 Query: 240 VMHVVSRLISVKQLRQGESVGYGATWQCPEDMQVGILSLGYGDGYPRLAASGTPFLVRGQ 299 VM + S +I V+ L+ GE VGYG + ++ ++GI++ GY DGYPR A +GTP LV G Sbjct: 232 VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGV 291 Query: 300 RCALIGRVSMDMIAIDLRRCPDAGVGEAVTVWGQDLPVEEIARHVGTIAYELVCNMPLRA 359 R +G VSMDM+A+DL CP AG+G V +WG+++ ++++A GT+ YEL+C + LR Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRV 351 Query: 360 PYI 362 P + Sbjct: 352 PVV 354
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 49.2 bits (117), Expect = 8e-09 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 17/122 (13%) Query: 160 FQSGSEWVRPTFLPVIAKIANVLKKTK---GNIIVAGHTDNLRISNARFRSNWDLSAARA 216 F ++P + ++ + L G+++V G+TD S+A N LS RA Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR-IGSDA---YNQGLSERRA 278 Query: 217 VSVALALFRDKGLEQKRFMVVGYADTQALEDNKTAANRSK---------NRRVEITVVFG 267 SV L KG+ + G ++ + N + + +RRVEI V Sbjct: 279 QSVVDYL-ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337 Query: 268 KD 269 KD Sbjct: 338 KD 339
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.7 bits (59), Expect = 0.031 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 4 RHLNEKDRFYIEQRLSE-GDSLRSIARALGFSPSTISREIKRH 45 R L E + I L+ + A LG + +T+ ++I+ Sbjct: 431 RVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.9 bits (88), Expect = 4e-05 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 28/163 (17%) Query: 25 NHHIIGQ----KELLLMLQIALLADGHLLVEGAPGLAKTT---AIKALSHYVEGDFQRIQ 77 ++G+ +E+ +L + D L++ G G K A+ G F I Sbjct: 136 GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAIN 195 Query: 78 ---FTPDLLPSDITG------TDVFRPQTGEF-YFQHGPLFHPIILADEINRASAKVQSA 127 DL+ S++ G T TG F + G LF DEI Q+ Sbjct: 196 MAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF-----LDEIGDMPMDAQTR 250 Query: 128 LLEAMGERQIT-VGNTTYPLPQLFLVMATQN-PLEQ---EGTF 165 LL + + + T VG T P+ ++A N L+Q +G F Sbjct: 251 LLRVLQQGEYTTVGGRT-PIRSDVRIVAATNKDLKQSINQGLF 292
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.1 bits (125), Expect = 9e-10 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 20/138 (14%) Query: 174 LSSVSLLIVDDSSFARNHLIKILSKLDINVVACNSGADAFAYLKKVANEESDADISKKIP 233 ++ ++L+ DD + R L + LS+ +V ++ A + +A + D Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATL---WRWIAAGDGD-------- 49 Query: 234 VVITDAEMPEMDGYTLTVKCRE-DPKLKDLFIVLHTSLSGEFNKAMVE--HVGCNDFIAK 290 +V+TD MP+ + + L + ++ P L L + + ++ G D++ K Sbjct: 50 LVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFM-----TAIKASEKGAYDYLPK 104 Query: 291 -FDPTKTLHIIQERLKAL 307 FD T+ + II L Sbjct: 105 PFDLTELIGIIGRALAEP 122
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 10/42 (23%), Positives = 22/42 (52%) Query: 348 VENILRNALFHTESGTEVRVSSRYDESSVIISVEDSGSGVFE 389 VEN +++ + G ++ + D +V + VE++GS + Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK 305
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (253), Expect = 7e-27 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 1/127 (0%) Query: 1 MSKNANVLLIDDDLELCELLIRYLTVEEFNVKAVHHGDEALSQLQAQHYDVAVLDVMLPG 60 M+ A +L+ DDD + +L + L+ ++V+ + + A D+ V DV++P Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 QSGFDVLKEMRKQQIETPVLMLTARGEEVDRIVGLELGADDYLPKPCNPRELVARLRAVL 120 ++ FD+L ++K + + PVL+++A+ + I E GA DYLPKP + EL+ + L Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 RRTTAKP 127 +P Sbjct: 120 AEPKRRP 126
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 141 bits (358), Expect = 2e-39 Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%) Query: 14 ILIGTAISGFMIGIDYTIVNMAIASIQTELTVNTNQLQWLMSGFGITFCAFLASMGKLAD 73 ILI I F ++ ++N+++ I + W+ + F +TF A GKL+D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 74 IVGRRRLLFIGISGFGLASLGAGFSNSIISLVIF-RLLQGVFGAIILPAGMALTASAFPA 132 +G +RLL GI S+ +S SL+I R +QG A M + A P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 133 KEQGRAMGIYNGILGLGLAFGPVFGGIILSFMSWHWIFFINIPIIIISLCICYFTIQGRD 192 + +G+A G+ I+ +G GP GG+I ++ HW + + IP+I I + ++ Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKE 192 Query: 193 CKTDQEMDWLGIALIAATLMSFVYVVNQATITGWASSLVIYPFIASFVFLGIFITVEAKS 252 + D GI L++ ++ F+ +I+ I S + IF+ K Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTTSYSISF---------LIVSVLSFLIFVKHIRKV 243 Query: 253 NSPFLPMSLFSNRGFFLGATAYMIAAGFAWPIIFLVPLYLQQVLGYSVYSA-SIALIPMT 311 PF+ L N F +G I G + +VP ++ V S S+ + P T Sbjct: 244 TDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGT 303 Query: 312 LMTAILPPLTGKIYDHKGAFTCFILLATCLILSFLL--FLTFTTQTHLTVLLLTFLLFGA 369 + I + G + D +G + T L +SFL FL TT +T++++ L + Sbjct: 304 MSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS 363 Query: 370 A 370 Sbjct: 364 F 364 Score = 32.5 bits (74), Expect = 0.004 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%) Query: 69 GKLADIVGRRRLLFIGISGFGLASLGAGF---SNSIISLVIFRLLQGVFGAIILPAGMAL 125 G L D G +L IG++ ++ L A F + S +I + G + Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIV 373 Query: 126 TASAFPAKEQGRAMGIYNGILGLGLAFGPVFGGIILS 162 ++S E G M + N L G G +LS Sbjct: 374 SSSLKQQ-EAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.047 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 3/105 (2%) Query: 318 PSKLVAVGDEIDVLVLEIDEERRRISLGMKQCVPNPWKKFSDKYNKGDKVAGKIKSITDF 377 L ++ ++ + +I+ G P + + N + K+ +F Sbjct: 190 ADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQ---QLNASIIAQTRFKNPEEF 246 Query: 378 GLFIGLDGGIDGLVHLSDISWNENGEEAVRNYKKGEEVEAVVLSV 422 G +V L D++ E G E + A L + Sbjct: 247 GKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.4 bits (74), Expect = 0.004 Identities = 14/27 (51%), Positives = 17/27 (62%) Query: 347 TLNGAKALGIDHITGSLETNKAADLAI 373 T+N A A G+ H GSLE K ADL + Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLVL 436
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 29.2 bits (65), Expect = 0.013 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 10/97 (10%) Query: 54 KDILDLGCGGGI---LSESLAKEGAQVTAIDMSKDVLNAAKLHKLESQLDIDYQHISAEE 110 K G GI ++ +LA +GA + A+D N KL K+ S L + +H A Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVD-----YNPEKLEKVVSSLKAEARHAEAFP 63 Query: 111 LAKQSPGKFEIITCMEMLEHVPDPLSILHACKTLLKP 147 + + I + + P+ IL +L+P Sbjct: 64 ADVRDSAAIDEI-TARIEREM-GPIDILVNVAGVLRP 98
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 39.4 bits (92), Expect = 5e-05 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 28/178 (15%) Query: 552 MRSEREKLLKMEEVLHDQVIGQSEAVTAVANAIRRSRAGLSDPSRPIGSFLFLGPTGVGK 611 R L+ + ++G+S A+ + + R L + + G +G GK Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR----LMQTDLTL---MITGESGTGK 173 Query: 612 TELSKALARFLFDTDEATIRIDMSEYMEKHAVARLVGAPPGYVGYEEGGQLTEQVRRRPY 671 +++AL + + + I+M+ + L G E G T R Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTG 225 Query: 672 SV-------ILFDEVEKAHPDVFNLLLQVLDDG---RLTDSQGRTVDFRNTVVIMTSN 719 + DE+ D LL+VL G + D R ++ +N Sbjct: 226 RFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN 280 Score = 33.7 bits (77), Expect = 0.004 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 135 NVEAAIERVRGG-------QNINDQAAEGNRQALDKYTIDLTERAEAG-KIDPVIGRDEE 186 AI+ G + +AL + ++ + P++GR Sbjct: 86 TFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAA 145 Query: 187 IRRTVQVLQRRTKNN-PVLI-GEPGVGKTAI 215 ++ +VL R + + ++I GE G GK + Sbjct: 146 MQEIYRVLARLMQTDLTLMITGESGTGKELV 176
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 51.0 bits (122), Expect = 5e-09 Identities = 68/374 (18%), Positives = 150/374 (40%), Gaps = 45/374 (12%) Query: 35 FYEFIQMNMFNSLAGSLAATFHLSAFQIGLVSAFYFLADSILLYPAGVLVDRLSSRRVII 94 F+ + + N +A F+ V+ + L SI G L D+L +R+++ Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 95 YGMVMCIIGTLLIASASSSWF-LVVARFLEGISAAFCLLSILRLASQWLPENRMATASGL 153 +G+++ G+++ S + L++ARF++G AA ++ + ++++P+ A GL Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 154 IVTIGMLGGAVSQTPLTMMIEQWGWREALYVVALIGVILLVVVVIVVKDAPTAKQHAKLQ 213 I +I +G V M+ W L ++ +I +I + ++ ++K K H ++ Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHW-SYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIK 202 Query: 214 TTVDKVGFWQTLVILVKNPQNWL--------IGLYIALM--------------NLPIMLL 251 + ++ + + +++ + N+P M+ Sbjct: 203 GIILMSVGIVFFMLFTTS-YSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIG 261 Query: 252 ----GGLFGS---------HFMQQGHGFSATEAATINMMIFIGTIVGSTVVGFVSDFLKQ 298 G +FG+ + M+ H S E ++ +IF GT + + G++ L Sbjct: 262 VLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSV--IIFPGT-MSVIIFGYIGGILVD 318 Query: 299 RRLP---MIIASVVSLVIFLII-LYAHALTYAGYISLFFLLGFFTAAQILGYPAAQASNP 354 RR P + I V FL ++ I + F+LG + + + +S Sbjct: 319 RRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLK 378 Query: 355 AKIVGSALGFVSVI 368 + G+ + ++ Sbjct: 379 QQEAGAGMSLLNFT 392
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 27.4 bits (61), Expect = 0.003 Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 3/28 (10%) Query: 6 PVRACAVPRYDVTKKDLPLSCPMPQMEI 33 V+ R + K + + P +E+ Sbjct: 515 AVQNT---RGGIGKASMIHNSLTPHIEV 539
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 2e-20 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 3 ARIMIIDDEAPIRDMVRFALELSHFEVIEAETAKEGQRKIIEKTPDLLLLDWMLPDQAGI 62 A I++ DD+A IR ++ AL + ++V A R I DL++ D ++PD+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 ELAQTLKVQYPALPIIMLTARAEEESRVLGLEQ-ADDYVIKPFSPRELIARIKAVLRRSQ 121 +L +K P LP+++++A+ + + E+ A DY+ KPF ELI I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 TNAGENTEPAQ 132 + + +Q Sbjct: 124 RRPSKLEDDSQ 134
>PF06580#Sensor histidine kinase Length = 349 Score = 34.5 bits (79), Expect = 4e-04 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 23/92 (25%) Query: 239 NAVRY----TPKGGKISIIAYKNDHGIHVLVKDTGIGVPKKHIQRLTERFYRVDKGRSRD 294 N +++ P+GGKI + K++ + + V++TG K + Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE---------------- 309 Query: 295 VGGTGLGLAIVKHVL-LRHEGELTIKSTEQQG 325 TG GL V+ L + + E IK +E+QG Sbjct: 310 --STGTGLQNVRERLQMLYGTEAQIKLSEKQG 339
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.0 bits (57), Expect = 0.017 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 34 GADSLDTVELVMALEEEFETEIPDEDAEKIATVQDAMNYVKQ 75 GA++LDT + + A E + P K+ D +V+ Sbjct: 296 GANALDTAKAIKAKLAELQPFFP--QGMKVLYPYDTTPFVQL 335
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 135 bits (342), Expect = 3e-41 Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 10/248 (4%) Query: 6 KLALITGASRGIGRAVLNELGRQGLTVVGTATTEAGAENITGFINEQGYKGCGLALNVTE 65 K+A ITGA++GIG AV L QG + E + + + +V + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 66 PEQITAAVDKITKEFGPVQVLVNNAGITRDNLMLRMKDEDWNAVIETNLSAVFRVTKACL 125 I +I +E GP+ +LVN AG+ R L+ + DE+W A N + VF +++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 126 KGMMKVRWGRIINIGSVVGNMGNPGQANYCAAKAGLVGVTKSMAHEFASRNITVNVIAPG 185 K MM R G I+ +GS + A Y ++KA V TK + E A NI N+++PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 186 FIQTDM-----TDALAEEQRVA-LLEH----IPAKRLGQPEDIAHMAAFLSSEAASYLTG 235 +TDM D EQ + LE IP K+L +P DIA FL S A ++T Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 236 QTLHINGG 243 L ++GG Sbjct: 249 HNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 58.2 bits (140), Expect = 1e-10 Identities = 58/316 (18%), Positives = 95/316 (30%), Gaps = 44/316 (13%) Query: 410 NP--AGHDRDILTTQIDNIRHATWGVKAAVADNATISLGDAAQELKTAGTAGASELVDTE 467 NP ++ + TT I + V + ++N I+ E A A+ TE Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA---RVDEAPVPPPAPATPSETTE 1038 Query: 468 LVAPEAE---------SPEAESPEAESPEAESPEAESPEAESPEAESPEAESPEAESPEA 518 VA ++ +A A++ E + +A + E ++ S E+ Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 519 ESPEAESPEAE--------------------SPEAESPEAESPEAESPEAESPEAESPEA 558 E+ E + E E SP+ E E P+AE P E Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP 1158 Query: 559 ESPEAESPEAESPEAETS-EIVEEVEEEGAVNVNVSVRGGGEHQDVQSVSLEEGDEATLT 617 +S + + E P ETS + + V E VN V T Sbjct: 1159 QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTG---------NSVVENPENTTPATTQP 1209 Query: 618 MGDSETEVALDDIRLEENSEEESVGADVDILAGDNEISAQLDAARAYILAEDVDSARKVL 677 +SE+ + + D A D A D+ K Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQ 1269 Query: 678 RDVLKQGDSTQQDEAR 693 L G + Q ++ Sbjct: 1270 FVALNVGKAVSQHISQ 1285 Score = 32.3 bits (73), Expect = 0.009 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 6/163 (3%) Query: 83 IAQAKRVKAQPKVQSPVKAKPEVTTVIVPSKPQKVLIEKKVSYIPTDKPRQIDNELKKQL 142 IA+ P + E + + V ++ + T + R++ E K + Sbjct: 1017 IARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNV 1076 Query: 143 GYITQQMSA--LTRSVEEVQEEMLSVARDVQQTSNGVLQLEEYQQQLQHAEQERIARQEA 200 TQ +E Q V++ ++ E+ Q+ + Q +QE Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS-PKQEQ 1135 Query: 201 AESVQSKQNEIAEIPVELGVHNVVTPAEPSLDQSPAASESRIT 243 +E+VQ + E N+ P + + ++ T Sbjct: 1136 SETVQPQAEPARE---NDPTVNIKEPQSQTNTTADTEQPAKET 1175
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 97.5 bits (242), Expect = 9e-26 Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 6/278 (2%) Query: 17 LFFSTGHALTRIHYQAPLATVKWTFSEELGF-CRLTHEIPHYGQAMFEMRTGRLQSFVLD 75 L + +A+ Y A +W C+L H IP +G A+F R + + + Sbjct: 14 LLSANSYAVMGKRYVATPQQSQWEMVVNTPLECQLVHPIPSFGDAVFSSRASKKINLDFE 73 Query: 76 TQVGPSRKET--VTLTTGSPGWRLPEALILNDHAKMSQGYAPFRFGTMTVRRMLNSLAQG 133 ++ ET V+L + P WR E + K + + + G T +L+ L +G Sbjct: 74 LKMRRPMGETRNVSLISMPPPWRPGEHADRITNLKFFKQFDGY-VGGQTAWGILSELEKG 132 Query: 134 YAPTLTYQSWLGNRQQVQVSISPANFSRSYTQYLACSKKILPFTFVDIEHTVIYFGVNDR 193 PT +YQ W Q+++V++S F Y + C +L ++F DI T++++ Sbjct: 133 RYPTFSYQDWQSRDQRIEVALSSVLFQSKYNAFSDCIANLLKYSFEDIAFTILHYERQGD 192 Query: 194 RILKDQRYKLERIQEYFKVMKPKIRRIVIKGYADYAGNYLYNKYLSIDRAKALRKFIVED 253 ++ K + +L +I +Y + I +++ Y D ++ LS RA++LR + E Sbjct: 193 QLTKASKKRLAQIADYVR-HNQDIDLVLVATYTDSTDGKSESQSLSERRAESLRTYF-ES 250 Query: 254 MKFDAKKLVVRAYGVGQAVANNSTRSGRALNRRATIDI 291 + ++ V+ YG + +A+N T G+ NRR I + Sbjct: 251 LGLPEDRIQVQGYGKRRPIADNGTPIGKDKNRRVVISL 288
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 3e-05 Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 11/111 (9%) Query: 180 TVLLVDDSRVAKRQIANILDQLKVQYITASDGIEAFEMLTKMVEGTDNINSKLLMMLSDI 239 T+L+ DD + + L + S+ + + ++++D+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD---------LVVTDV 55 Query: 240 EMPNMDGYTLTSKCREHPKLKDLYIVLNTSISGEFNQQMAKRVKADQFLAK 290 MP+ + + L + ++ DL +++ ++ + A A +L K Sbjct: 56 VMPDENAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 27.9 bits (61), Expect = 0.012 Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 55 DIIHGDQIELNHFCRDIERLICEYEPRIRHVTVDLAEEHVMNSRFELIISGEVYYENK 112 D+++ + N R E+ + T++ AEEH E + S VY ++K Sbjct: 276 DVLNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSK 333
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 1e-20 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 2 KILIADDSMTMRRIIINALVDHGAASDNILEAEDGERALVLWQAEGDEVGLALLDWNMPK 61 IL+ADD +R ++ AL G ++ + A + L + D MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAG--DGDLVVTDVVMPD 59 Query: 62 MNGLDTLHLIRDIDKKTPIIMVTTHSEKTDVVSAISEGATNYIIKPFEVDTLIAKISQ 119 N D L I+ P+++++ + + A +GA +Y+ KPF++ LI I + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 28.0 bits (62), Expect = 0.013 Identities = 9/29 (31%), Positives = 15/29 (51%) Query: 9 DNAPAAIGTYSQAIQVKDTVYISGQIPLD 37 +N A + S+ ++ T Y SG+I L Sbjct: 443 NNKIAGVNNRSEYVETTSTEYTSGKINLS 471
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 120 bits (302), Expect = 2e-33 Identities = 74/366 (20%), Positives = 140/366 (38%), Gaps = 68/366 (18%) Query: 4 KVLILGANGFIGSSLSEYILEHTDWEIYGLD---------LSHHKLDQCIGHPRFHFTEG 54 K L+ GA GFIG +S+ +LE ++ G+D L +L+ + P F F + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGIDNLNDYYDVSLKQARLEL-LAQPGFQFHKI 59 Query: 55 DMLIHKEWVE--YHVKKCDVVLPLVAIATPATYVKDPLRIFELDFEANLEVVRWCAKYN- 111 D L +E + + + V +++P + + L ++ C Sbjct: 60 D-LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 112 KHVIFPSTSEVYGMCEDDAFDEESSNFINGPINKPRWIYSNSKQLMDRVIHALGEKDGLN 171 +H+++ S+S VYG+ F + ++ P +Y+ +K+ + + H GL Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDD------SVDHPVSLYAATKKANELMAHTYSHLYGLP 172 Query: 172 YTLFRPFNWIG--GRQDEVFNIKEGGARVLTQFISNIIHGRDIQLVDGGEQRRCFTYIDD 229 T R F G GR D F ++ G+ I + + G+ +R FTYIDD Sbjct: 173 ATGLRFFTVYGPWGRPDMALFK----------FTKAMLEGKSIDVYNYGKMKRDFTYIDD 222 Query: 230 GIEALARIIEC---------------RDSSANRQIINIGN--PENNHSIKELAEVLLAEI 272 EA+ R+ + S A ++ NIGN P + + + L + Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVE---LMDYIQALEDAL 279 Query: 273 KKYDQYQAQADKVRVIITQSDRYYGEGYQDVKARIPAIENAKKYLNWQPKTDFVTAIQKT 332 +A K + + D E D + + + + P+T ++ Sbjct: 280 GI------EAKKNMLPLQPGDVL--ETSAD-------TKALYEVIGFTPETTVKDGVKNF 324 Query: 333 LAYHLA 338 + ++ Sbjct: 325 VNWYRD 330
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.1 bits (169), Expect = 3e-15 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 4/120 (3%) Query: 6 RMNILIVDDRKNVLHSLKRLILLKFPESKLTLAESGEEAMSLISEGPSFGLIMTDYKMAN 65 IL+ DD + L + L + + + I+ G L++TD M + Sbjct: 3 GATILVADDDAAIRTVLNQA--LSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD 59 Query: 66 INGLEVLAHAHGIHADTVRVLLTGYPNDEGIIAAIANDDINYILAKPWTQEQIVEILNQC 125 N ++L D ++++ I A +Y+ KP+ +++ I+ + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYL-PKPFDLTELIGIIGRA 118
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 2e-04 Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 8/227 (3%) Query: 2 VFNLGFGAGLLLAGFLFTHYTHWLFWLDALTAFVSLLLIIFYLTEGHTVEANSHLEQAVA 61 F G AG +L G + H F+ A ++ L F L E H E +A+ Sbjct: 139 CFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALN 198 Query: 62 GSVWLVLKRRPQLVSYTLICTVLSLTMAQLIFAFPLYLAALFNAQGAQY----YGQIMTA 117 R +V+ + + QL+ P L +F + G + A Sbjct: 199 PLASFRWARGMTVVAALMAVFFI----MQLVGQVPAALWVIFGEDRFHWDATTIGISLAA 254 Query: 118 NAVIVVIFTPILTVLTRRYSALIGTMIAAIFLGLCYSTLLLNQSLIVIFLAVFFMTVAEV 177 ++ + ++T ++ + LL + + + + + Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGG 314 Query: 178 LIVTKSSVFIANHSPSSHRGRITGILPAVINSANYFSPVIMGGYIDH 224 + + ++ +G++ G L A+ + + P++ Sbjct: 315 IGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361 Score = 34.8 bits (80), Expect = 2e-04 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 6/142 (4%) Query: 104 NAQGAQYYGQIMTANAVIVVIFTPILTVLTRRYSALIGTMIAAIFLGLCYSTLLLNQSLI 163 + +YG ++ A++ P+L L+ R+ +++ + Y+ + L Sbjct: 38 SNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW 97 Query: 164 VIFLA--VFFMTVAEVLIVTKSSVFIANHSPSSHRGRITGILPAVINSANYFSPVIMGGY 221 V+++ V +T A + +IA+ + R R G + A PV+ GG Sbjct: 98 VLYIGRIVAGITGATGAVAGA---YIADITDGDERARHFGFMSACFGFGMVAGPVL-GGL 153 Query: 222 IDHFGFHALWYLMIILAVLGVC 243 + F HA ++ L L Sbjct: 154 MGGFSPHAPFFAAAALNGLNFL 175
>PF04647#Accessory gene regulator B Length = 212 Score = 29.4 bits (66), Expect = 0.022 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 16 FIVLHLICLLAFVTGVTTSSVVLAISLYFIRMWAVTAGYHRYFSHKSFKTSRVFQFILAF 75 + +I L+AFV G+ +S R ++ G H ++ TS + +LA+ Sbjct: 36 VFQIIIILLVAFVIGLAKEVAFCLLSAAVYRRFS--GGAHCEKYYRCTLTSLLVFNVLAY 93 Query: 76 LAQ 78 +A Sbjct: 94 IAH 96
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 27.0 bits (59), Expect = 0.049 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 88 HQRLSTHTSPDVISQELIR-EHNIQVSESTI-YRYIYDDRERGGELYKNL 135 H +L T DV + EL++ E + SE + +R +YD R++ LY NL Sbjct: 317 HLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAKLLYNNL 366
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.1 bits (62), Expect = 0.003 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 23 AGGGLTKFVLSIDSII--HTLEWIGLGIIALFVGAFV 57 A G++ V + S++ TL G+ I+ + +++ Sbjct: 472 ADAGVSYVVALLFSLLAGTTLGIWGIAIVTGILCSYI 508
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 34.1 bits (78), Expect = 0.003 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 27/181 (14%) Query: 586 KLKINQFLKVKPPSREE--VNFLNSVYSVSDLNVDIEDNFDHISEDDQLINFLIKKIHSN 643 L +N F + + N L Y +D DN++ + F+ +I++ Sbjct: 333 NLNLNYFCQSFNSIIPDRFSNALKHFYRKQYYTMDYTDNYN-------INGFVNGQINTK 385 Query: 644 IPLDINKACSIIDEIKDFNEDEPVEEISADFIPKNDIFLNIPLEDRVDSVYYDYGTSSLE 703 +PL NK +II E + + +N+I L + S Y G Sbjct: 386 LPLS-NKNTNIIS----------KPEKVVNLVNENNISL-------MKSNIYGDGLKGTT 427 Query: 704 DCLIDYKQIKSAVNKMAILNDMQKSKANNISKNILDRISYITCYEFYDKKSDVNSIIDKI 763 + +I ND NNIS +D I I Y SD Sbjct: 428 EDFYSTYKIPYNEEYEYRFNDSDNFPLNNISIEEVDSIPEIIDINPYKDNSDNLVFTQIT 487 Query: 764 I 764 Sbjct: 488 S 488
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.013 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 147 GIVVISGATGSGKSTLLASLVANSLEQVDSHLKVLT 182 VV+ G G GKSTL+ +LV D+H + T Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGLDF-FSDTHFDIGT 631
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 42.5 bits (100), Expect = 1e-06 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 9/125 (7%) Query: 133 VPIINENNAISIEATAIGDNDTLAALIASQAQADLLVLLTCVDG-LIDYRANQVVETVTN 191 VP+I E+ I A+ D D +A + AD+ ++LT V+G + Y + + + Sbjct: 197 VPVILEDGEIK-GVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEK-EQWLRE 254 Query: 192 IEQQAAELVRQEKTELGTGGMATKLQAA-RIVNESGIAMLIANGQQPYVMTELLQGANIG 250 ++ + +E G M K+ AA R + G +IA E L+G G Sbjct: 255 VKVEELRKYYEEG-HFKAGSMGPKVLAAIRFIEWGGERAIIA---HLEKAVEALEG-KTG 309 Query: 251 TLFCP 255 T P Sbjct: 310 TQVLP 314 Score = 32.1 bits (73), Expect = 0.003 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%) Query: 10 KRIIIKVGTSLLVKDSKLQTYF-----ITHLAQQIVQLRARGKECIVVTSG---AVGLGA 61 KR++I +G + L + + +Y + A+QI ++ ARG E +V+T G VG Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYE-VVITHGNGPQVGSLL 61 Query: 62 ELNHKGKTPNRTEQQALAAIG 82 G+ Q + G Sbjct: 62 LHMDAGQATYGIPAQPMDVAG 82
>SALSPVAPROT#Salmonella virulence plasmid 28.1kDa A protein signature. Length = 255 Score = 26.3 bits (57), Expect = 0.038 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 24 QTLPATPEQLMRSRYTAYTQANIDYIIATMQG-EALNRFNRNSATT 68 QTLP P+ + T++ Q N+ A EALN F R A T Sbjct: 192 QTLPTEPDNSTATDLTSFYQTNLGLKTADYTPFEALNTFARQLAIT 237
>PF01540#Adhesin lipoprotein Length = 475 Score = 30.1 bits (67), Expect = 0.027 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 14/213 (6%) Query: 66 KTEPKFKVEKGVVDFITYLQDMIKDLHKAGRKSSSLAQSIEKQILGSVYSSLNEISNEQA 125 K E KF++++ F L I+ L+K + + A + L+E+ + + Sbjct: 272 KLERKFQIDE---KFKKQLISTIELLNKKSVEVKTFATVNTIK----KDFLLSELESFKE 324 Query: 126 LETAKLSNQVINLEKEVETGKLNEKELSTKVDK-LSSELDNLKSRNEQLLEIANNSSSTT 184 T+ L V E+ + E+ + DK L+ E +K+ E+L +I N + + Sbjct: 325 FNTSWLEKIVSEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKNGVEELKKINNEAFELS 384 Query: 185 NTVIKTATFHTALERTAKISEGLTKVGEVMVGLQNIALPVSQSMASANEVIKTLNDTVKQ 244 TV KT LE+ KI E + + L S+ + V T Sbjct: 385 KTVNKTI---AELEKKFKIDV---SFKEQLKNFADDLLDKSRQIDEFTTVTSTQEGFTLA 438 Query: 245 SQKTIKDTDERKFKDVQSKITTVKDEIIKEVKD 277 ++ K+ F ++S+ V++ ++K+ Sbjct: 439 ELESFKEITTTWFNGMKSEWARVQEAWKDQLKE 471
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 27.9 bits (62), Expect = 0.034 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 11/101 (10%) Query: 100 LSQAEINRLLTELVKKSLENNDDLFSIK-----TLYSYFNEKSDILTHLCSSEVINPGFY 154 LSQ EI++LL + + +D I TLY + + + +++ F Sbjct: 5 LSQDEIDQLL-TAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFA 63 Query: 155 RLISSS-----SYSNHKIISGIRILFSYDFIKNNSITTTDN 190 RL ++S H ++ + L +FI++ +T Sbjct: 64 RLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLA 104
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.016 Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 19/183 (10%) Query: 96 NNQLDSRKKYNIADKKKDKNINNTNEVKYNN-VSDNLSDKLPINVNNENIKNNIS-ENND 153 N ++ + +I K D ++ Y +D LSDK + N N++ N++ + Sbjct: 766 NITASNKAQVHIGYKTGDTVCVRSDYTGYVTCTTDKLSDKALNSFNPTNLRGNVNLTESA 825 Query: 154 KFLSKINLILNSINEIKIDNKSSKNNILKLNQSDVDQIT-DSIKKELSASQNEIDSYIKR 212 F+ + +I +S N+ ++L ++ +T +S +L + + +I Sbjct: 826 NFVLGKANLFGTI-------QSRGNSQVRLTENSHWHLTGNSDVHQLDLA----NGHIHL 874 Query: 213 DNQINDNNKMIINKLNQVLAEVAKENKNYAYLIAKSNNNFDKLTLRAIITGRAWL--VNK 270 ++ N NN + K N + N ++ YL SN DK+ + TG L +K Sbjct: 875 NSADNSNN---VTKYNTLTVNSLSGNGSFYYLTDLSNKQGDKVVVTKSATGNFTLQVADK 931 Query: 271 TGK 273 TG+ Sbjct: 932 TGE 934
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 31.3 bits (71), Expect = 0.004 Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 9/56 (16%) Query: 345 GCFDILHAGHIDYLQKARAKGDRLIIAINDDTSIQRLKGPS-RPIVPLAQRMQLLN 399 G FD + GH+D +++ D++ +A+ L+ P+ +P+ + +R++ + Sbjct: 7 GSFDPITFGHLDIIERGCRLFDQVYVAV--------LRNPNKQPMFSVQERLEQIA 54
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 26.1 bits (57), Expect = 0.036 Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 37 AALLLDDKMRHIRDSGKVIGVERIAIMAALNLAHDYLKNMNHRDDYIDDVNQQLEQLEHK 96 +++ +D+ ++ + G V E +A A++ L + + + ++ ++ +QQL L Sbjct: 158 SSMKIDELIKKQKSGGNVSSSE-LA-KASIELINQLVDTVASLNNNVNSFSQQLNTLGSV 215 Query: 97 VKQALRFSS 105 + + Sbjct: 216 LSNTKHLNG 224
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 32.0 bits (72), Expect = 0.007 Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 18/201 (8%) Query: 275 QQVNNSSATMSNMMREAQVQLTEQASEAEHIQSSMTAMNDTMKTVVSKAEEVAKSARDAD 334 ++ + +EA+ + E E + + K + + +EE AK+ A Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEE-AKAVEIAQ 195 Query: 335 QKSHEGQKVVNATRETIDSL-----------AKEVETTAQVITSLNEASNNVGSILDVIK 383 +K Q V I +L E++T A L +AS + +++K Sbjct: 196 KKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQASAKYKELDELVK 255 Query: 384 GISEQTNMLALNAAIEAARAGEQGRGFAVVADEVRGLAQRTGDSAEQIYDLIEQLRSHAH 443 +S + N N R + V A ++R Q+ ++E + I + Sbjct: 256 KLSPRANDPLQN------RPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQIQ 309 Query: 444 NAVEAMDKGKERADASVQQSE 464 A+ + + A V ++E Sbjct: 310 KAISQVSNNRNAGIARVHEAE 330
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 35.9 bits (83), Expect = 2e-04 Identities = 24/98 (24%), Positives = 37/98 (37%) Query: 80 ILVDYNSGQVLTSGNPDERLSPASLTKVMSYYVVAEALRNGKIKESDKVRISRKAWKTGG 139 I +D SG+ LT+ DER S KV+ V + G + K+ ++ Sbjct: 43 IEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYS 102 Query: 140 SRMFVKAGDSVSVKDLLQGMVVQSGNDATVALAEYVAG 177 D ++V +L + S N A L V G Sbjct: 103 PVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGG 140
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 29.3 bits (65), Expect = 0.029 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 5/98 (5%) Query: 4 SYWLGLLIFLNGFFITTHAASNTLAVSASTNSKSAEYIQRADVKSYINDLVKQYGFSKAQ 63 S +L L + L F + A + AS +I+R + ++ D + K + Sbjct: 9 SVFLILYLILTSSFPSYTYAQD--LQIASNYITDRAFIERPE--DFLKDKENAIQWEKKE 64 Query: 64 LERWFHHAKANQR-ALEILQRPAEKVWTWQQYRSWLVS 100 ER + ++ ALE+ ++ +E++ + Q R + Sbjct: 65 AERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYD 102
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 30.6 bits (69), Expect = 0.003 Identities = 10/17 (58%), Positives = 13/17 (76%) Query: 9 ALFGGTFDPIHSGHLRI 25 A++ G+FDPI GHL I Sbjct: 3 AIYPGSFDPITFGHLDI 19 Score = 28.6 bits (64), Expect = 0.012 Identities = 7/26 (26%), Positives = 15/26 (57%) Query: 180 ISSTMVRERLKKNESIRYLVPEPVEQ 205 +SS++V+E + ++ + VP V Sbjct: 125 LSSSLVKEVARFGGNVEHFVPSHVAA 150
>PF06580#Sensor histidine kinase Length = 349 Score = 27.5 bits (61), Expect = 0.020 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 41 KSLRAGKLQLAESYVLIKRGEVFLIGSHITP------LNTASTHIKADPTRTRKLLLH 92 K+ + ++ + + + ++ + + I P LN I DPT+ R++L Sbjct: 142 KNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTS 199
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 172 bits (437), Expect = 3e-48 Identities = 101/448 (22%), Positives = 172/448 (38%), Gaps = 88/448 (19%) Query: 4 KLRNIAIIAHVDHGKTTLVDKLLEQSGT---LGRNESGERMMDSNDLEKERGITILAKNT 60 K+ NI ++AHVD GKTTL + LL SG LG + G D+ LE++RGITI T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIQWQDYRINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTKKAFEQGL 120 + QW++ ++NI+DTPGH DF EV R LS++D +LL+ A DG QTR + + G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 NPIVVINKVDRPGARPDWVMDQV-------------FELFDQLGATDEQLD--------- 158 I INK+D+ G V + EL+ + T+ Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 159 --------------------------------FPVVYASALQGYASLEEGELGGDMTPLF 186 FPV + SA +G + L Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNN--------IG--IDNLI 231 Query: 187 KTIIEKVAAPDVDPEGPFQMQVSSLDYSSYVGAIAIGRISRGKISTNSAIRIIDHQGNER 246 + I K + + +V ++YS +A R+ G + ++RI + Sbjct: 232 EVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKE 287 Query: 247 SGRILKIMTHHGLQRVETEQAFAGDIVCVTGIERPF---ISETFCSPDKVEPLPALTVDE 303 +I ++ T + + ++A++G+IV + + +T P + + Sbjct: 288 KIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQR----ERIENPL 343 Query: 304 PTVSMMFCVNNSPFAGKEGKYVTSRQIRDRLEQELIYNVALRVENTEDPDKFRVSGRGEL 363 P + + + D L LR + +S G++ Sbjct: 344 PLLQTTVEPSKPQQREMLLDALLEISDSDPL---------LRYYVDSATHEIILSFLGKV 394 Query: 364 HLSILIETMRRE-GYELGVSRPEVILKE 390 + + ++ + E+ + P VI E Sbjct: 395 QMEVTCALLQEKYHVEIEIKEPTVIYME 422 Score = 30.2 bits (68), Expect = 0.027 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 1/84 (1%) Query: 388 LKEIDGKLQEPFEELMLDIEEQHQGTVMERLGLRRGQLTNMIPDGKGRIRLDYQIPTRGL 447 LK+ +L EP+ + +++ + + + L +IP R + Sbjct: 528 LKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKN-NEVILSGEIPARCI 586 Query: 448 IGFHNDFLTMTSGSGIMTHVFDHY 471 + +D T+G + Y Sbjct: 587 QEYRSDLTFFTNGRSVCLTELKGY 610
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.1 bits (60), Expect = 0.031 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 4 RHLNEKDRFYIEQRLSE-GDSLRSIARALGFSPSTISREIKRH 45 R L E + I L+ + A LG + +T+ ++I+ Sbjct: 431 RVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.011 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 9/59 (15%) Query: 47 EIVAIL-GKSGAGKSTFLRTIAGLLPASSGKVYHQDTLIEKP-IEEIAMVFQSFALLPW 103 + +L G G GKST + T+ GL + DT + ++ Sbjct: 596 DYSVVLEGTGGIGKSTLINTLVGLD-------FFSDTHFDIGTGKDSYEQIAGIVAYEL 647
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 54/281 (19%), Positives = 87/281 (30%), Gaps = 16/281 (5%) Query: 60 AGLGNLAATFFYSYLIIQIFSGPLLDRFGARYIGSLALLISALGTWLFAQADQLLWAEIG 119 A G L A + G L DRFG R + ++L +A+ + A A L IG Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 120 RALMGV-GVAFATVTYLKVAATWFD--ARRFALLSGLVPTAVMIGAVFGQVPLAHVVASE 176 R + G+ G A T D AR F +S ++ G V G ++ Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG-----LMGGF 157 Query: 177 GWRRSLELCAILGVIFAVLFLLFVRDKKNHSSVIDDTQQVNWQDIIS--VLKRPANWLLT 234 A L + + + + + +N L+ Sbjct: 158 SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMA 217 Query: 235 LYSGLAFAPLAVFAGLWGNPFLVASYQLTTADAA-SLTSLVFIGLGVGGPIFGALADYFG 293 ++ + V A LW F + SL + + I G +A G Sbjct: 218 VFFIMQ-LVGQVPAALWV-IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLG 275 Query: 294 KRTLWMFLGGFVTLASVLCLLYCLGLHSTLLSILMFLFGFG 334 +R M G + + LL + +M L G Sbjct: 276 ERRALML--GMIADGTGYILLAFAT-RGWMAFPIMVLLASG 313
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 68.8 bits (168), Expect = 8e-15 Identities = 88/402 (21%), Positives = 149/402 (37%), Gaps = 48/402 (11%) Query: 12 ILVIFGVIAAQAAVSLYLPSLPAIDHEWHLVSGQAQLTLSAFFLTFGVSQLFYGALSDHF 71 IL F V+ + SLP I ++++ +AF LTF + YG LSD Sbjct: 21 ILSFFSVLNE----MVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 72 GRKPLLLTGLVILVLSSVWAIYATSFHSLL-AARLVQGAGGGALSVLARAIIRDLFHGDE 130 G K LLL G++I SV SF SLL AR +QGAG A L ++ + Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 131 LRKAISILAIAASFTPALAPSLGGWLEDHFDWRSSFVILTVYSI---------------- 174 KA ++ + + P++GG + + W +I + I Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIK 196 Query: 175 -----------ILLVTIFSLFTETNQYQRQSNESIDFSKVVASYYFVT---------KNK 214 + + F LFT + + F V VT KN Sbjct: 197 GHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNI 256 Query: 215 LFWCYGFAILIGYLSLVICLANAPFLLEKKFGLS-AEITGYLMFVQPGFFLVGNLLQHKL 273 F I + ++ ++ P++++ LS AEI ++F ++ + L Sbjct: 257 PFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGIL 316 Query: 274 TDKISGDLFLKFGMVILGVIGLSFLLQGLFHSAT--LISVLLTLALAGFATSLILVNALA 331 D+ L G+ L V SFL T +++++ L G + + +++ + Sbjct: 317 VDRRGPLYVLNIGVTFLSV---SFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIV 373 Query: 332 GVLLPFTENAGAAAALSGVLQMVGASFITALISNLHWTSIID 373 L E AGA +L + A++ L ++D Sbjct: 374 SSSLKQQE-AGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLD 414
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.008 Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 48 CYSDYVVAVYGPIGAGKSTFLELL 71 C DY V + G G GKST + L Sbjct: 593 CKFDYSVVLEGTGGIGKSTLINTL 616
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 206 bits (526), Expect = 1e-63 Identities = 79/308 (25%), Positives = 140/308 (45%), Gaps = 17/308 (5%) Query: 16 IVSFDQRTNILLIHDYVDKIKIIKKMIKALDRPVPQVMIEARIVIANRSFEKDLGVKFGV 75 I+ +TN L++ D + ++++I LD PQV++EA I + +LG+++ Sbjct: 311 IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWAN 370 Query: 76 SGGGSTVATAGSISGTNAIRQGESPGIAERLNVSLPFMTDSAATGLGRFALAVAKLPGNL 135 G T T + + AI ++ SL SA + A + GN Sbjct: 371 KNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLA----SALSSFNGIAAGFYQ--GNW 424 Query: 136 LLDLELQALESEGEAEVISTPKLLTAHDQEAFIEQGEEIPYLESTSSG-----AASVSFK 190 + L AL S + ++++TP ++T + EA G+E+P L + + +V K Sbjct: 425 --AMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERK 482 Query: 191 KAVLGLTVTPHITPDQHIILTIRLSKDSRSALSAGDGGSSANVLPPAIDTRVIKTQALVK 250 + L V P I ++L I S A S+++ L +TR + LV Sbjct: 483 TVGIKLKVKPQINEGDSVLLEIEQEVSS----VADAASSTSSDLGATFNTRTVNNAVLVG 538 Query: 251 DGETIVLGGIYEQEKQRVVRRVPFLADLPGIGWLFQSRSQSTLNKELLIFVTPKIMSAAA 310 GET+V+GG+ ++ +VP L D+P IG LF+S S+ + L++F+ P ++ Sbjct: 539 SGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRD 598 Query: 311 SHGVLSTG 318 + S+G Sbjct: 599 EYRQASSG 606
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 63.3 bits (154), Expect = 3e-14 Identities = 31/209 (14%), Positives = 71/209 (33%), Gaps = 11/209 (5%) Query: 15 EAVTPYQKAAQEWDR-RIGSSRAQANSWRLIAIACIVACILLLIGMMMLIQQKKNVVYVA 73 + + Y + A W+R ++ ++ ++A ++ + L K YV Sbjct: 8 DELKAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVI 67 Query: 74 EVGSSG---QVINVVKTNQPYRPTDAQYQYFIAKFIRHAMSLPLDPVILKNNLLEAYQLT 130 V + + + + +A +YF+A ++R+ + ++ Sbjct: 68 TVDRNTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREG--WIAAAREEYFDAVMVMS 125 Query: 131 ASKGRLQFNELMK---KLQPTRHIGQLTQT-VEVQMVEQITPNSYSATWRQTSYDQNGKV 186 A + +++ K P + T VE++ V + N + + S + Sbjct: 126 ARPEQDRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST 185 Query: 187 TQVKRYHGVFTVSQTMPTTEHEILVNPLG 215 + V P+ E + NPLG Sbjct: 186 KTDAVATIKYKVD-GTPSKEVDRFKNPLG 213
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.3 bits (89), Expect = 4e-06 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%) Query: 9 IISPKTVMLKAQQAGLVTHIYFQSGEQVNKGQRLLQIDNHKQQASLAKAKADLFSLKADY 68 S ++ +K + +V I + GE V KG LL++ +A K ++ L + + Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 69 QRNLQMAQKNHVSISANTLDQKLGTVRAAQAAVASAKESLAETTVRAPFA 118 R Q SI N L + V+ + + ++ F+ Sbjct: 151 TR----YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS 196
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.014 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 13/108 (12%) Query: 10 TLGSYLAEGDSIVMLT-DSKALLVQYQLPQEYSAQMAINQHVHITTAQQAWAEKTDKPPV 68 T G + ++++++ + L V + + + + Q+ I +A+ Sbjct: 345 TEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV--EAFPYTR--YGY 400 Query: 69 TTSTVSYISPILITNSHAYLAH-ARINTLNNTMI-------LKPGMTV 108 V I+ I + L I+ N + L GM V Sbjct: 401 LVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAV 448
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 1e-04 Identities = 33/192 (17%), Positives = 60/192 (31%), Gaps = 49/192 (25%) Query: 173 LEQAYFQVDTRQTHYLDMADVKGQA----HAKRALEIAAAGRHHLLFVGPPGTGKTMLAS 228 L + + + D + G++ R L L+ G GTGK ++A Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 229 RLPGILPALSNQEALESAAVHSL----TSAEIDLSCWFIPKFASPHHTASSIAMVG---- 280 A+H + ++ IP+ + G Sbjct: 179 ------------------ALHDYGKRRNGPFVAINMAAIPR------DLIESELFGHEKG 214 Query: 281 ---GGSVPKPGEISRAHHGVLFLDEL----PEFDRKVLEVLREPLESGQIDIIRASHRAS 333 G G +A G LFLDE+ + ++L VL++ + R Sbjct: 215 AFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG------EYTTVGGRTP 268 Query: 334 FPASFQLIAAMN 345 + +++AA N Sbjct: 269 IRSDVRIVAATN 280
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 55.1 bits (132), Expect = 3e-11 Identities = 59/260 (22%), Positives = 102/260 (39%), Gaps = 18/260 (6%) Query: 2 LTGKKGLIIGLANENSIAFGCAKILKQQGAELI-LTHRSEKSYKQARFLANE-LSADLYQ 59 + GK I G A I A+ L QGA + + + EK K L E A+ + Sbjct: 6 IEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 60 CDVTNQENIKQLFPYIKKKWQTLDFVIHSLAFAKPRELQGRLVDTSSQAFLQAMDISCHS 119 DV + I ++ I+++ +D +++ +P G + S + + ++ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRP----GLIHSLSDEEWEATFSVNSTG 119 Query: 120 FLRIAQQAESLMPN--GGSLISMSYLGAQKVMKNYNMMGPIKAALEASIKYLAVELAEKN 177 ++ M + GS++++ A + KAA K L +ELAE N Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 178 IRVYGISPGLMPTRAATGIKNLDQLLAATTRKS--------PMQRIINQEEVGALASFLV 229 IR +SPG T + + + S P++++ ++ FLV Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 230 SDFASGMTGQTLFVDGGYNL 249 S A +T L VDGG L Sbjct: 240 SGQAGHITMHNLCVDGGATL 259
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 253 bits (648), Expect = 4e-79 Identities = 130/534 (24%), Positives = 190/534 (35%), Gaps = 105/534 (19%) Query: 79 GDTYVRYQQKYEGIPVIGKQVVV-KQPKAVTGFAATSRSASRATATRISLAKDLDVDLVA 137 G T +R++Q +G +V ++ + T L +LD + Sbjct: 87 GHTVMRFEQAIAASLCMGAVLVAHVNDGELSSLSGT-------------LIPNLDKRTLK 133 Query: 138 T---VSAGDAMAFAKQQFEQSYSGTQVADGSNSVKATKEIRIVDNKARLYYRVTFNASNT 194 T +S A AKQ + + A I + RL Y V Sbjct: 134 TEAAISIQQAEMIAKQDVADRVTKERPAA-EEGKPTRLVIYPDEETPRLAYEVNVR---F 189 Query: 195 AGGKPYSMVYIIAANGGAKPVVLKHWDNIQNYE--DTGPGGNEKTVKHGPTGVEFFYGEN 252 P + +Y+I A G VL W+ + + P TV G Sbjct: 190 LTPVPGNWIYMIDAADGK---VLNKWNQMDEAKPGGAQPVAGTSTVGVG----------- 235 Query: 253 NLPALNVSENNGS-CTMDNGDVRLVDVQNQED----HSWDSDYNTTAYQYSCGHNQGDPI 307 V + T + +Q+ ++D T Sbjct: 236 ----RGVLGDQKYINTTYSSYYGYYYLQDNTRGSGIFTYDGRNRTVLPGSLWADGDNQFF 291 Query: 308 NGAYSPTDDAYYFGSMIIDMYKNWYGVDALQENGEPMQLIMRVHYGTDYDNAFWDGQTMS 367 + DA+Y+ ++ D YKN +G + +G + VHYG Y+NAFW+G M Sbjct: 292 ASYDAAAVDAHYYAGVVYDYYKNVHGRLSY--DGSNAAIRSTVHYGRGYNNAFWNGSQMV 349 Query: 368 FGDG--SSFYPLV-SLDVAGHEVSHGFTEQHSGLEYSDQSGSLNEAFSDMAGQAVRAYLL 424 +GDG +F P +DV GHE++H T+ +GL Y ++SG++NEA SD+ G V Y Sbjct: 350 YGDGDGQTFLPFSGGIDVVGHELTHAVTDYTAGLVYQNESGAINEAMSDIFGTLVEFYAN 409 Query: 425 STNSDLYKQLYFNQDEVTWGIGETIMKGDNTDTALRYMDQPSKDQDENGVSADCLDKDLA 484 W IGE I ALR M P+K D + S Sbjct: 410 RNPD--------------WEIGEDIYTPGVAGDALRSMSDPAKYGDPDHYSKRYTGTQDN 455 Query: 485 GSGCIISYDDVVTAAKKLPLRYQQSYIVHHGSGVFNKAFYLLSQQ----------VGIKE 534 G VH SG+ NKA YLLSQ +G + Sbjct: 456 GG-------------------------VHTNSGIINKAAYLLSQGGVHYGVSVTGIGRDK 490 Query: 535 AFKVMKDANATRWTSGSDFADAACGVLQAAHADGVGSDSM----IKEVFNQVGV 584 K+ A T S+F+ +QAA AD GS S +K+ FN VGV Sbjct: 491 MGKIFYRALVYYLTPTSNFSQLRAACVQAA-ADLYGSTSQEVNSVKQAFNAVGV 543
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 422 bits (1086), Expect = e-146 Identities = 164/488 (33%), Positives = 248/488 (50%), Gaps = 14/488 (2%) Query: 1 MLKQRVVIVSQCQVSANELKLLFEFMGENVAVCLN-NDDWTMLLHDNDPLLLCVAHDALS 59 M +++ L G +V + N W + + L++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 HVFALYHELKHQNKIACECRFVVVAEPERIKRHYSAKELKNVCGYLVKPYRYAQLEQVLD 119 + F L L K + +V++ A E YL KP+ L +++ Sbjct: 61 NAFDL---LPRIKKARPDLPVLVMSAQNTFMTAIKASEK-GAYDYLPKPF---DLTELIG 113 Query: 120 NVQTAQTANEERLAAGRSEVQDELNQLLVGKSRAIRRVRQLIRQVAKSEVNVLILGCSGT 179 + A + R + + QD + LVG+S A++ + +++ ++ ++++ ++I G SGT Sbjct: 114 IIGRALAEPKRRPSKLEDDSQDGMP--LVGRSAAMQEIYRVLARLMQTDLTLMITGESGT 171 Query: 180 GKEVVSQAIHRASVRAQQAFVPVNCGAIPADLLESELFGHEKGAFTGAIASRQGRFELAQ 239 GKE+V++A+H R FV +N AIP DL+ESELFGHEKGAFTGA GRFE A+ Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAE 231 Query: 240 KGTLFLDEIGDMPLNMQVKLLRVLQERTFERVGSNKALECDVRVIAATHRNLEELIEEGL 299 GTLFLDEIGDMP++ Q +LLRVLQ+ + VG + DVR++AAT+++L++ I +GL Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGL 291 Query: 300 FREDLFYRLNVFPIEMPSLAERSEDIPLLIKELVSRIQREGRGRIRFTAEALARLKNYHW 359 FREDL+YRLNV P+ +P L +R+EDIP L++ V + ++EG RF EAL +K + W Sbjct: 292 FREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPW 351 Query: 360 PGNVRELANLVERLTVSYANRWVDVPQLPPKFLTAEDIEACNALDESDGPLYEETAPIDP 419 PGNVREL NLV RLT Y + + + + G L A + Sbjct: 352 PGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEEN 411 Query: 420 IDIEANMVGPSTVHLPGEGVDLKSYLTTIEANLIQAALDQSNGVVAHAAKRLSIRRTTLV 479 + G + L +E LI AAL + G AA L + R TL Sbjct: 412 MRQYFASFGDA----LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 480 EKIRKLNL 487 +KIR+L + Sbjct: 468 KKIRELGV 475
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 455 bits (1173), Expect = e-160 Identities = 161/484 (33%), Positives = 268/484 (55%), Gaps = 20/484 (4%) Query: 1 MSQGVVLIVEDEAALAEAIKETLSLANLPSIIANHAEEALEKIKRHNILIVISDINMPGI 60 M+ +L+ +D+AA+ + + LS A I ++A I + +V++D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGHELLKQIKRYQSDIPVLLMTAFSNIEGAVQAMRDGAVDYIAKPFEPEYLVECVQHFID 120 + +LL +IK+ + D+PVL+M+A + A++A GA DY+ KPF+ L+ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 K----------KIYDEKNPIAEDLNTKKLFSLAKKVAATDASVLITGESGTGKEVLSRFI 170 + D + ++++ + ++ TD +++ITGESGTGKE+++R + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 171 HHHSSRYKNSFIAINCAAIPENMLEAVLFGYEKGAFTGAYQACPGKFEQANGGTLLLDEI 230 H + R F+AIN AAIP +++E+ LFG+EKGAFTGA G+FEQA GGTL LDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 231 SEMDLNLQAKLLRVLQEKEVERLGGRKLIQLDVRIIATSNRKIQDYIKDGRFREDLYYRI 290 +M ++ Q +LLRVLQ+ E +GGR I+ DVRI+A +N+ ++ I G FREDLYYR+ Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 291 NVFPLQWQPLRSRINDIVPLAKRLVYQYANKE--KVPELTQAAEKKLTEYFWPGNIRELD 348 NV PL+ PLR R DI L + V Q A KE V Q A + + + WPGN+REL+ Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFV-QQAEKEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 349 NVMQRAIILHVGDKIEIDDIQLDSDWQSDEYDESEINNINNNFKNKGEKNIDDINGDYSG 408 N+++R L+ D I + I+ + +S+ D + + +++ Y Sbjct: 360 NLVRRLTALYPQDVITREIIENEL--RSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 409 DNKNGKSDNLSYEMKHHEFD--IILKSLEKHKGVRKKVSEELDISSRTLRYKLAKMREAG 466 + + Y+ E + +IL +L +G + K ++ L ++ TLR K+ ++ G Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL---G 474 Query: 467 ITIP 470 +++ Sbjct: 475 VSVY 478
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 58.1 bits (140), Expect = 1e-14 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%) Query: 8 SAEQAVLNVMQQLAAKAANEKTAAGSGVGDNHANTFSNLLKVSLNTVNKHQINSANLQKS 67 SA Q + V+ QL A A +A +F+ L +L+ ++ Q + + Sbjct: 1 SAIQGIEGVISQLQATA---MSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEK 57 Query: 68 FEVGEATLP--EVIVAMQKASVSFTAIKEVRNKLIDAYRQVMNMPV 111 F +GE + +V+ MQKASVS +VRNKL+ AY++VM+M V Sbjct: 58 FTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 396 bits (1018), Expect = e-134 Identities = 198/566 (34%), Positives = 302/566 (53%), Gaps = 40/566 (7%) Query: 12 IEGFNRLNWLKQVALMIGLSVSIASGVAVIMWTKTSNYEPVFSSVDSLSLPHIVQSLKQS 71 +E NRL ++ L++ S ++A VA+++W KT +Y +FS++ IV L Q Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 72 NIEFKLDERRNLILVAKDQVNKARIALAENGVSGRISTGFESLGKDSSFGTSQFMETVRY 131 NI ++ I V D+V++ R+ LA+ G+ + GFE L + FG SQF E V Y Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQ-EKFGISQFSEQVNY 131 Query: 132 RHALEGELSRTISSIQGVRSSRVHLAIPKQSSFLKSQKEARASVFINLQGGY-LEKSQVA 190 + ALEGEL+RTI ++ V+S+RVHLA+PK S F++ QK ASV + L+ G L++ Q++ Sbjct: 132 QRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQIS 191 Query: 191 AIVNLVASSVPNLKRSQVSVVDQHGNLLTHAMEGGGFAATERQFAYQRQVESAYVQRILN 250 A+V+LV+S+V L V++VDQ G+LLT G + Q + VES +RI Sbjct: 192 AVVHLVSSAVAGLPPGNVTLVDQSGHLLT-QSNTSGRDLNDAQLKFANDVESRIQRRIEA 250 Query: 251 ILEPIVGSGNVRAQVTANVDFTKSEKTQETFNPDMKAVRS----EFLLNEEKSGEAGLGG 306 IL PIVG+GNV AQVTA +DF E+T+E ++P+ A ++ L E+ G GG Sbjct: 251 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 310 Query: 307 IPGALSNQPPGIGTAPEKA--VGEEGAEKTKQ----------TPTSKRNESTRNYEVDRL 354 +PGALSNQP AP ++ A+ T Q P S + T NYEVDR Sbjct: 311 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 370 Query: 355 ISHTRGQLGRVMRLTVAVVLNNKTTRDDKGKITAAAIKQDEINRIAQLVRDAVGFDVARG 414 I HT+ +G + RL+VAVV+N KT D K + D++ +I L R+A+GF RG Sbjct: 371 IRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIEDLTREAMGFSDKRG 426 Query: 415 DSLNVVNLPFVKEVTAKPPVIPLWEQGWFISLLKQVLGGLFILILVL----FILRPTLRS 470 D+LNVVN PF +P W+Q FI L L +L++ +RP L Sbjct: 427 DTLNVVNSPFSAVDNTGGE-LPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTR 485 Query: 471 LAGKSKAELFDQKMQLAREVGIELDANGNPIVPEEEPVVDEFERPLDLPHDSDDQERNIN 530 ++KA +++ E +E+ + +E + L + Q Sbjct: 486 RVEEAKAAQEQAQVRQETEEAVEVRLSK------DEQLQQRRANQR-LGAEVMSQR---- 534 Query: 531 FVKQLVEKDAKLVAQVIKEWVSEDEQ 556 ++++ + D ++VA VI++W+S D + Sbjct: 535 -IREMSDNDPRVVALVIRQWMSNDHE 559
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 265 bits (678), Expect = 4e-89 Identities = 102/330 (30%), Positives = 192/330 (58%) Query: 9 NLDGIQKSSIFLMTVGKDVAATILQHLNPREVQRVGEAMVKTTKVEKSEVKYVFDIFYDA 68 L G QK++I L+++G ++++ + ++L+ E++ + + K + V F + Sbjct: 14 ALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKEL 73 Query: 69 VARQTGLGIGSDEYIREMLVGAMGEEQAGGVIERILIGGSTKGLDSLKWMDARAVADVIR 128 + Q + G +Y RE+L ++G ++A +I + ++ + ++ D + + I+ Sbjct: 74 MMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQ 133 Query: 129 YEHPQIMSIVLSYIDGDQAAEVLAHLPMNQRSDLMMRVASLEAVQPAALRELNEILEKQF 188 EHPQ ++++LSY+D +A+ +L+ LP ++++ R+A ++ P +RE+ +LEK+ Sbjct: 134 QEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKL 193 Query: 189 AGKQSAQAAAIGGVKTAADIMNFLDSTIEGEIMEEVKAADEELGHQIEDLMFVFDDLINI 248 A S + GGV +I+N D E I+E ++ D EL +I+ MFVF+D++ + Sbjct: 194 ASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLL 253 Query: 249 ADRDMQRLLTDVEQDKLMLALKGADNSMKEKIFNNMSSRAAAMLREDLEVSAPARLSDVE 308 DR +QR+L +++ +L ALK D ++EKIF NMS RAA+ML+ED+E P R DVE Sbjct: 254 DDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVE 313 Query: 309 TAQKEILATARNLADQAEISLGGAGGEEMV 338 +Q++I++ R L +Q EI + G E+++ Sbjct: 314 ESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.9 bits (70), Expect = 0.006 Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 121 RAVADVIRYEHPQIMSIVLSYIDGDQAAEVLAHLPMNQRSDLMMRVASLEAVQPAALREL 180 + + DV Q +I+L I + +++V +L + L +A LE + Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITS---ELK 63 Query: 181 NEILEKQFAGKQSAQAAAIGGVKTAADIMN-FLDSTIEGEIMEEVKAADEE 230 + +L + + + GG+ A +++ L + +I+ + +A + Sbjct: 64 DNVLLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS 114
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 45.2 bits (106), Expect = 1e-07 Identities = 42/190 (22%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 132 DLEELHKKAHEDGFAIGKAAGFSAGQAAGE----AQGYQEAYAQAQTE---INQKKQELE 184 L +L +AHE G+ G A G G G AQG ++ A+A+++ I+ + Q+L Sbjct: 43 QLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLV 102 Query: 185 QEQLKLIEMMNSLTHPFEEVSDKLKDELLHFITQLSEEIAKEQCLISADGLKDIINQILA 244 E ++ ++S+ + L+ + + ++ + + L I Q+L Sbjct: 103 SEFQTTLDALDSV----------IASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQ 152 Query: 245 K--LFSEEKIRISLNPVDIERIKEQENEELLSENIDFIEDDAITVGGCVVDAGASRVDMT 302 + LFS K ++ ++P D++R+ + L D + GGC V A +D + Sbjct: 153 QEPLFS-GKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDAS 211 Query: 303 MENRIRDMTQ 312 + R +++ + Sbjct: 212 VATRWQELCR 221
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 40.2 bits (93), Expect = 5e-07 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 2/142 (1%) Query: 1 MKRSQRLVNIIKIAEYQERKLAKQLAASRNTLKQYQEQLAMLDLYLNDYLKKLSAIKKNN 60 M L + +AE + A+ L R +Q +EQL ML Y N+Y L++ Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 QEVTISKLTIYHDFIQTIEQGIQRQQHFIADASIVIQRHEQEWRKARAKVESFKHLQQKF 120 +T ++ Y FIQT+E+ I + + + + + WR+ + ++++++ LQ++ Sbjct: 61 --ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQ 118 Query: 121 KNAEDRELDRQEQRMIDDYVNR 142 A +R +Q+ +D++ R Sbjct: 119 STAALLAENRLDQKKMDEFAQR 140
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 30.1 bits (67), Expect = 0.019 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 353 LMIKLHVDASQKTHLTFTTHSDVVREMIEQQLPRLKDMFDSQGLALGDANVAGQGTFSQG 412 +M+K DA K L + H+ + M +QQ+ + M +GL L + V + Sbjct: 47 MMLKSMRDALPKDGLFSSEHTRLYTSMYDQQIA--QQMTAGKGLGLAEMMVK---QMTPE 101 Query: 413 QHFNEEKE 420 Q EE Sbjct: 102 QPLPEEST 109
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.4 bits (76), Expect = 0.001 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%) Query: 319 TNAMEFADDNAEDLPPPPPPSNPDLQQPLPDFNDSDFPPPPPPPPPSDEEQMPLADFDDI 378 + DL PP P P+ P P P P ++ P+ Sbjct: 42 AQPISVTMVTPADLEPPQAVQPPPEPVVEPE--------PEPEPIPEPPKEAPVVIEKPK 93 Query: 379 ELPPPPPMDFETGPETQVSPIEEVNSGATPTD 410 P P P + + Q P +V + Sbjct: 94 PKPKPKP---KPVKKVQEQPKRDVKPVESRPA 122 Score = 28.8 bits (64), Expect = 0.042 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 7/93 (7%) Query: 293 PPPPPPAELKAGAKARREEEAAVTVLTNAMEFADDNAEDLPPPPPPSNPDLQQPLPDFND 352 P P P + A E AV + + E +P PP + +++P P Sbjct: 39 PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP---- 94 Query: 353 SDFPPPPPPPPPSDEEQMPLADFDDIELPPPPP 385 P P P P ++ P D +E P P Sbjct: 95 ---KPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.8 bits (82), Expect = 2e-04 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 19/92 (20%) Query: 47 LIGPNGSGKSTLLKLLTGLI----TPD------------QGQIYLNQSELHSLKRKEIAK 90 L G G GKSTL+ L GL T G + SE+ + +R + Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRADAEA 660 Query: 91 HIAFLPQRSAIPDQFTVIDLILAGRYPHQGLF 122 AF R D++ +P Q + Sbjct: 661 VKAFFSSRK---DRYRGAYGRYVQDHPRQVVI 689
>PF04183#IucA / IucC family Length = 580 Score = 211 bits (538), Expect = 1e-62 Identities = 73/461 (15%), Positives = 151/461 (32%), Gaps = 72/461 (15%) Query: 73 YQLILTLPESQIDQKKIVIAIQKPSLTYHFS---------YISSPIMTSKQQPLGK---L 120 Y+ + D+ I P + F +I + + +P+ L Sbjct: 23 YEQVFHAESQGDDR----YCINLPGAQWRFIAERGIWGWLWIDAQTLRCADEPVLAQTLL 78 Query: 121 LDFSDLALIITNVLAKHHRSSVNLEFIQQAMQSCEIIEYFLKQSPHSNQQALNFIQSEQS 180 + + + +A+H ++ + + + + S+ LN Q Sbjct: 79 MQLKQVLSMSDATVAEH------MQDLYATLLGDLQLLKARRGLSASDLINLNA-DRLQC 131 Query: 181 LIFGHEFHPTPKARQGFTEKDIKRYSPELSEKFQLYYFKINKNQLKQYSKNNKLPPVIIE 240 L+ GH K R+G+ ++ ++RY+PE + F+L++ + + + N ++ Sbjct: 132 LLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLT 191 Query: 241 E--------------------QDHVLYPTHPWQAHYLLSQQETKQALIDNNIQPIGLQGD 280 + + P HPWQ ++ + + +G GD Sbjct: 192 AAMDPQEFARFSQVWQENGLDHNWLPLPVHPWQWQQKIATDF-IADFAEGRMVSLGEFGD 250 Query: 281 SFSATSSVRTLFQENHPYFY--KFSLNVRLTNCIRKNSVAELKTAVELTHILNQ-YTQEV 337 + A S+RTL + K L + T+C R + + L Q + + Sbjct: 251 QWLAQQSLRTLTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDA 310 Query: 338 SKNHPNVTLLNESYAFSLKLANLAYNPTLNKKITEGFGFILRDNPLFSNHSNNLNNLLSD 397 + +L E A + A + E G I R+NP Sbjct: 311 TLVQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPC-------------- 356 Query: 398 HNHFLEPLSEPLLAGGLFSSQPDQHSWIENILIQLARHEKFPYETIAVRWFNRYISLLVP 457 +L+P P+L L + + + A W + ++V Sbjct: 357 --RWLKPDESPVLMATLMECDENNQPLAGAYIDR--------SGLDAETWLTQLFRVVVV 406 Query: 458 AILDYYLYHGITFEPHLQNVLIQLDHQYYPSHIYLRDLEGT 498 + +G+ H QN+ + + + P + L+D +G Sbjct: 407 PLYHLLCRYGVALIAHGQNITLAMK-EGVPQRVLLKDFQGD 446
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 101 bits (252), Expect = 2e-30 Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 33 WGAALEESGDAEGKDELETLNTGFDPVALASEEYPDLEKILDLPVTISMQVGGANISIRN 92 W AL E K + + + S D++ I+D+PV +++++G ++I+ Sbjct: 19 WADALNEQKATTTKSAADAVFQQLGGGDV-SGAMQDIDLIMDIPVKLTVELGRTRMTIKE 77 Query: 93 LLQLNQGSVVELDRYAGEPLDVRVNGTLIAHGEVVVVNEKYGIRLTDVISAAERLQKL 150 LL+L QGSVV LD AGEPLD+ +NG LIA GEVVVV +KYG+R+TD+I+ +ER+++L Sbjct: 78 LLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 242 bits (620), Expect = 4e-83 Identities = 134/243 (55%), Positives = 178/243 (73%), Gaps = 1/243 (0%) Query: 1 MAIFLIFIVFLGCCITTSAAPTIPIVTATTEPNGSETYSVGLQILLLMTALTLLPAFLLM 60 M L L IT A +P +T+ P G +++S+ +Q L+ +T+LT +PA LLM Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 61 MTSFTRILIVLGILRQALGMPTVPTNQILIGLSLFLTIFIMSPVWMKINQQAIQPYFADE 120 MTSFTRI+IV G+LR ALG P+ P NQ+L+GL+LFLT FIMSPV KI A QP+ ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 121 INVQTALEKAQKPIRNFMIEQTREADLKLFVEMSGTQANQ-LSEIPLTIIMPAFITSELK 179 I++Q ALEK +P+R FM+ QTREADL LF ++ T Q +P+ I++PA++TSELK Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180 Query: 180 TAFQIGFMIFLPFLVIDLVVASVLMGMGMMMLSPLIISLPFKIMLFVLVDGWMLILGTLA 239 TAFQIGF IF+PFL+IDLV+ASVLM +GMMM+ P I+LPFK+MLFVLVDGW L++G+LA Sbjct: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240 Query: 240 SSF 242 SF Sbjct: 241 QSF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 51.7 bits (124), Expect = 1e-12 Identities = 22/76 (28%), Positives = 44/76 (57%) Query: 7 VDLISRAVYVLIIMSSILIVPGLVVGLIIAVFQAATQINEQTLSFVPRLLATFLALVFAG 66 V ++A+Y+++I+S + ++GL++ +FQ TQ+ EQTL F +LL L L Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PLLLKIIISFTEELIK 82 ++++S+ ++I Sbjct: 65 GWYGEVLLSYGRQVIF 80
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 116 bits (292), Expect = 1e-33 Identities = 92/249 (36%), Positives = 149/249 (59%), Gaps = 2/249 (0%) Query: 1 MLELTTADIHAWAAGYFWPFIRIAAMLMTIAVIGSQYVAKHVRLVLAVLITIVIVPVIPE 60 ML++T+ +W YFWP +R+ A++ T ++ + V K V+L LA++IT I P +P Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLP- 59 Query: 61 VPKLDILSIDSVLITVQQVLIGIFIGFMTQLLFQIFVIGGQIIAMQMGLGFAALVDPQNG 120 + + S ++ + VQQ+LIGI +GF Q F G+II +QMGL FA VDP + Sbjct: 60 ANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 FVVTGVSQVYFIMVALLFFTMNGHLVFIQMVVESFTILPITADSVLSMQFIWLMLEKFSW 180 + ++++ ++ LLF T NGHL I ++V++F LPI + + S F+ L + S Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLAL-TKAGSL 178 Query: 181 VFAKAVLIALPAILSLLLINFAFGVMSRAAPQLNVFSIGFPTTLLMGAVVIAFVVFIINE 240 +F +++ALP I LL +N A G+++R APQL++F IGFP TL +G ++A ++ +I Sbjct: 179 IFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAP 238 Query: 241 HFQSYFVEI 249 + F EI Sbjct: 239 FCEHLFSEI 247
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 308 bits (790), Expect = e-105 Identities = 108/348 (31%), Positives = 185/348 (53%), Gaps = 6/348 (1%) Query: 8 AQEKTEDPSQKRIDDARKRGQVPRSKELNTFAIVVFGVILLIAFGQYMGEYFFKIIRICF 67 + EKTE P+ K+I DARK+GQV +SKE+ + A++V +L+ + +Y+F+ Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMG----LSDYYFEHFSKLM 57 Query: 68 TLTPTELLQDD--LIMTKVKDVFYLASYLLLPFLSLILLVALIAPILMGGLNFSSESLTP 125 + + + V +V YL P L++ L+A+ + ++ G S E++ P Sbjct: 58 LIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKP 117 Query: 126 KIDRMDPIKGLKRMFSIKSIIELIKAIFKFLLVMAMAIFLMWFFSEKFLHLAYEGDKAAL 185 I +++PI+G KR+FSIKS++E +K+I K +L+ + ++ L L G + Sbjct: 118 DIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECIT 177 Query: 186 LHSLTLIGWCALGLGMTLLVVVMIDVPFQFWDYKKQLKMSHKEIKDERKETEGQPEVKQK 245 ++ + + +V+ + D F+++ Y K+LKMS EIK E KE EG PE+K K Sbjct: 178 PLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSK 237 Query: 246 IRRLQMEMSQKRMMEGVKTADVVITNPTHFAVALSYEENAAGAPLLVAKGGDFIAEQIRK 305 R+ E+ + M E VK + VV+ NPTH A+ + Y+ PL+ K D + +RK Sbjct: 238 RRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRK 297 Query: 306 VAEHSDVSIVTLPALARSIYYTTDIGNEIPEGLYLAVAQVLAYVFQLE 353 +AE V I+ LAR++Y+ + + IP A A+VL ++ + Sbjct: 298 IAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 4e-25 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 2 KILVVDDFSTMRRIVKNLLRDLGFTNIAEADDGATAWPLLQKSDFDFLVTDWNMPGMTGI 61 ILV DD + +R ++ L G+ + AT W + D D +VTD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DLLKNVRAHDKLKSMPVLMVTAEQKREQIVEAAQAGVNGYIVKPF 106 DLL ++ +PVL+++A+ ++A++ G Y+ KPF Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>FLAGELLIN#Flagellin signature. Length = 507 Score = 42.3 bits (99), Expect = 3e-06 Identities = 34/139 (24%), Positives = 62/139 (44%) Query: 3 TRVSTSSIFNTTVENMAKRQEELAKVQDQIASNKKILTAADDPIDALRTLALKNNIAQKK 62 ++T+S+ T N+ K Q L+ ++++S +I +A DD +NI Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 63 QFSENMDFSRSRLELEEATLTSLAGLFREVKVRAIEAGNGGYATSDVREVGRSIASLLES 122 Q S N + S + E L + + V+ +++A NG + SD++ + I LE Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 123 IVQQANSRDRNGEYLFSGS 141 I + +N NG + S Sbjct: 122 IDRVSNQTQFNGVKVLSQD 140 Score = 32.7 bits (74), Expect = 0.003 Identities = 19/78 (24%), Positives = 32/78 (41%) Query: 369 NITLNENIQRMIASIDEAAGTLLSVTTEVGLRQSNIHLQQEVSSHIQLSQNKALGDLSDL 428 ++ +ASID A + +V + +G Q+ + + N A + D Sbjct: 410 AAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDA 469 Query: 429 DFAKAVSELSILQTTLQA 446 D+A VS +S Q QA Sbjct: 470 DYATEVSNMSKAQILQQA 487
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 210 bits (537), Expect = 8e-61 Identities = 135/528 (25%), Positives = 252/528 (47%), Gaps = 36/528 (6%) Query: 4 LGISVAGLNAARTQLDTTSHNIANASTPGYTRQRVLQSSVLGDTASGQYVGAGVQIDAIQ 63 + +++GLNAA+ L+T S+NI++ + GYTRQ + + +G +VG GV + +Q Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQ 63 Query: 64 RMADRFAVEQLRDSTTAFAESDIFHSISSRVDNLASNDATSLSTSLSGYFETLNEGVNEP 123 R D F QLR + T + + S++DN+ S +SL+T + +F +L V+ Sbjct: 64 REYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVSNA 123 Query: 124 TSIALRQSILGEANNLTTRFHTIERELSQLRVEINRDLDDAALNLTQLGKRVAIINDQIS 183 A RQ+++G++ L +F T ++ L ++N + + + K++A +NDQIS Sbjct: 124 EDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQIS 183 Query: 184 RAVGSAGGAIPNDLLDDRDRALKEIAEFANISVFEHTDGSVDVSIGSGQSLVAGTNSLTI 243 R G GA PN+LLD RD+ + E+ + + V G+ ++++ +G SLV G+ + + Sbjct: 184 RLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTARQL 243 Query: 244 VAEPNAEDASKSNLFVKDLNKNIRFDITNEIQSGRVKGLIDVRDNVIDQSLRQLGLVAVG 303 A P++ D S++ + D + +G + G++ R +DQ+ LG +A+ Sbjct: 244 AAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLALA 303 Query: 304 LIQTTNEQHKLGMDFNSALGGDFFNDLNKSVLIAQRYLPNSANAGNAALTVELGEFAADT 363 + N QHK G D N G DFF + K L N+ N G+ A+ + Sbjct: 304 FAEAFNTQHKAGFDANGDAGEDFF-AIGKP-----AVLQNTKNKGDVAIGATV------- 350 Query: 364 IALPNKPATGIKDLEAEEYNLIITGTSYELIRQSDQASMASGAIADFPIQINGMRISLSS 423 T + A +Y + +++ R + + A+ + +G+ ++ + Sbjct: 351 --------TDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELT-FT 401 Query: 424 GGFADQDSYVIRPLQGLARGIDVQITDPKKLALAW--PVAASENEANLGSGKLTVSDMVS 481 G A DS+ ++P+ +DV ITD K+A+A S+N N + S+ + Sbjct: 402 GTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDN-RNGQALLDLQSNSKT 460 Query: 482 TNQPINFSDL-----------STAANTVTSFQPNLVSQLTDLKTPLAG 518 +F+D + T ++ Q N+V+QL++ + ++G Sbjct: 461 VGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISG 508 Score = 70.8 bits (173), Expect = 1e-14 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%) Query: 880 YNTNGFGDNSNAIKLAKIEQQAVLTADTSGNPTSSISQGYESLVASVASETETSIIDLNA 939 G DN N L ++ + + S + Y SLV+ + ++T T Sbjct: 437 EEDAGDSDNRNGQALLDLQ-----SNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSAT 491 Query: 940 SETLKRQAQQKRDSIMGVNLDEEAANLIQFQQAYQASARVITVAQTLFSSLLQ 992 + Q ++ SI GVNLDEE NL +FQQ Y A+A+V+ A +F +L+ Sbjct: 492 QGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 88.6 bits (219), Expect = 1e-22 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 31/201 (15%) Query: 10 SNAFDFSAFQKLKANVNKAGQEDK-TLRAVAEQFESIFIKMALDSMRKASKELESDLFKS 68 S A+D + +LKA KAG++ +R VA Q E +F++M L SMR A + LF S Sbjct: 10 SAAWDAQSLNELKA---KAGEDPAANIRPVARQVEGMFVQMMLKSMRDALPK--DGLFSS 64 Query: 69 SYQDFYQDLYDDQLSLNLANNGGIGLTDALVRYLS-QQAGSEQ----------------- 110 + Y +YD Q++ + G+GL + +V+ ++ +Q E+ Sbjct: 65 EHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRY 124 Query: 111 ----VLNVNNTLKKEQSAQDGQTAFKQLIATLEPYLDDLSEKLGVSRKAILSHAIVETGW 166 + + K +A L S++ GV IL+ A +E+GW Sbjct: 125 QNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGW 184 Query: 167 GSTNMMKRGHLSNSNQVNLFG 187 G ++R + S NLFG Sbjct: 185 GQ-RQIRRENGEPSY--NLFG 202
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 373 bits (960), Expect = e-130 Identities = 159/367 (43%), Positives = 228/367 (62%), Gaps = 12/367 (3%) Query: 35 LVFVFSGIFISPSITYAEQRIKDISNIASVRSNQLIGYGLVVGLNGTGD---NANFTIVS 91 LVF +P RIKDI+++ + R NQLIGYGLVVGL GTGD ++ FT S Sbjct: 11 LVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQS 70 Query: 92 FKRMLSNLGIKLPPGVDPKMKNVAAVALSAELPAFAKPGQRIDVTASSLGDSKSLVGGTL 151 + ML NLGI G KN+AAV ++A LP FA PG R+DVT SSLGD+ SL GG L Sbjct: 71 MRAMLQNLGITTQGG-QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNL 129 Query: 152 LMSPLKGADGRVYALAQGGVIVGGLGVTGKDGSKLIVNVPSVGRIPGGAIVEKQVPTPFS 211 +M+ L GADG++YA+AQG +IV G G D + L V + R+P GAI+E+++P+ F Sbjct: 130 IMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFK 188 Query: 212 HDDHIVFNLKSPDFTTAKWMADVINQF----LGPGSARPLDSTSVWVSAPKDPAQKVMFV 267 ++V L++PDF+TA +ADV+N F G A P DS + V P+ A + Sbjct: 189 DSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLM 247 Query: 268 AVLENLKVKSAEAPARVIVNSRTGTVVISKNVRVSPAAVTHGNLIVTIEETTKVSQPGAL 327 A +ENL V + PA+V++N RTGT+VI +VR+S AV++G L V + E+ +V QP Sbjct: 248 AEIENLTV-ETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPF 306 Query: 328 SGGETVTVPESEINAEQQNNPMFVFSPGPTLKDIVRAVNEVGVGPGDLIEILEALQAAGA 387 S G+T P+++I A Q+ + + + GP L+ +V +N +G+ +I IL+ +++AGA Sbjct: 307 SRGQTAVQPQTDIMAMQEGSKVAI-VEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGA 365 Query: 388 LHAELVV 394 L AELV+ Sbjct: 366 LQAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 150 bits (379), Expect = 3e-47 Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 12/225 (5%) Query: 12 LLAIMAGLLNGCSY------VVGPEPGDPRYAPIPPAVAHIPQYQGGAIYQTRYGASLYN 65 + +++ L GC++ V G P P P A I Q Y + L+ Sbjct: 11 ISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQ---PLFE 67 Query: 66 TTLPFQVGDVLTVEFNESNKASKKADNKIEKKDELTMDGSALPAAAKSIPFLGHLVDENW 125 P +GD LT+ E+ ASK + + + +P + + L + Sbjct: 68 DRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVP---RYLQGLFGNARADV 124 Query: 126 QVSQERKFQGKGDAKQENSLRGSITVTVSRILANGNLVIRGEKWMKLNSGREYIRLSGIV 185 + S F GKG A N+ G++TVTV ++L NGNL + GEK + +N G E+IR SG+V Sbjct: 125 EASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVV 184 Query: 186 RADDIDASNTIQSTKIADARIAYSGTGSFADSSRQGWLSRFFGSV 230 I SNT+ ST++ADARI Y G G ++ GWL RFF ++ Sbjct: 185 NPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNL 229
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 1e-06 Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 197 ASGAATLGNPASDAYGSTRQGELEASNVNVVEELIGLIETQRAYEMNSKSISTADGMMQF 256 + T + + S VN+ EE L Q+ Y N++ + TA+ + Sbjct: 482 TATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDA 541 Query: 257 LNQ 259 L Sbjct: 542 LIN 544 Score = 35.7 bits (82), Expect = 2e-04 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 14/78 (17%) Query: 5 LWISKTGLDAQNLKLQVVSNNLANVSTTGFKKDRAVFQSLFYQNVRQAGAENAEGVRLPS 64 + + +GL+A L SNN+++ + G+ + + N Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQ---ANSTLGAGGW-------- 52 Query: 65 GLMLGRGVAVGATLKQHD 82 +G GV V +++D Sbjct: 53 ---VGNGVYVSGVQREYD 67
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.0 bits (62), Expect = 0.034 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 4 GIYIAMSGAKQAFTKLAMNNNNLSNASTTGF 34 I AMSG A L +NN+S+ + G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGY 33
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 40.7 bits (95), Expect = 2e-05 Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 2 SFNIALSGLQASSQDLSVISNNIANASTIGFKKSRAEFGDVYQTSGSGSAVGSGV 56 N A+SGL A+ L+ SNNI++ + G+ + T G+G VG+GV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGV 57 Score = 39.6 bits (92), Expect = 4e-05 Identities = 14/43 (32%), Positives = 26/43 (60%) Query: 689 LEDSNVDLTQELVSMIIAQRNFQANAQTIRTSDQVTQTIINIR 731 S V+L +E ++ Q+ + ANAQ ++T++ + +INIR Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.0 bits (62), Expect = 0.012 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 10/71 (14%) Query: 5 SVFEIAGSAMMAQSIRLNTTASNLANINSVSSSIDTTYRSRQPVFAPIAASMRDEFFPNR 64 S+ A S + A LNT ++N+++ N +RQ I A Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYN-------VAGYTRQTT---IMAQANSTLGAGG 51 Query: 65 APGRGVQVLGI 75 G GV V G+ Sbjct: 52 WVGNGVYVSGV 62 Score = 27.6 bits (61), Expect = 0.018 Identities = 8/40 (20%), Positives = 15/40 (37%) Query: 101 LPNVNPVEAMVNMISASQSYRVNVEAFNTSKQLMQQTLRL 140 + VN E N+ Q Y N + T+ + + + Sbjct: 506 ISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 26.2 bits (57), Expect = 0.043 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 34 TAAVAAAAPATDAGAAVEEQTEFDVVMKEFGGNKVGAIKAVRAITGLGLKEAKAMVESCP 93 A V APAT + K N+ A + A KEAK+ V++ Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET-TAQNREVAKEAKSNVKANT 1080 Query: 94 ATVKEGVSKEEAEEVKKQLEEAGATVE 120 T + S E +E + + ATVE Sbjct: 1081 QTNEVAQSGSETKETQTTETKETATVE 1107
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 26.3 bits (58), Expect = 0.043 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 10/57 (17%) Query: 43 NAKTQNLEVGAPVPVVITVYSDRSFTFETKTPPASYLLKKAAKLQKGSGTPNLNKVG 99 + EV A ++ F TP SY + + ++V Sbjct: 243 YSHNSQTEVAA----------TLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVV 289
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 94.2 bits (234), Expect = 3e-28 Identities = 46/103 (44%), Positives = 66/103 (64%) Query: 9 SRFDKLKWALVCLLVVAAAGGNFYFSSYALSLRAGAVLVVVVAALAIASLTGKGRQAVDF 68 + +KW +V L++ A GN+ + L LRA AV++++ AA +A LT KG+ V F Sbjct: 12 RGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKATVAF 71 Query: 69 LREARIELRKVVWPARKEVQQTTMIVGAFVVVAALVLWGVDSI 111 REAR E+RKV+WP R+E TT+IV A V +L+LWG+D I Sbjct: 72 AREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGI 114
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 43.3 bits (102), Expect = 3e-08 Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 5 KNRNQLGFSLIEIMVAVAIIGILIAIAVPSYQEYVSRAKNAALDATIAA 53 Q GF+L+EIMV + IIG+L ++ VP+ +A + I A Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVA 51
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 120 bits (303), Expect = 1e-34 Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 13/217 (5%) Query: 6 VKLYRWQAVTDSQQTHQGINSALNQQ------------ALECDLFSRDKIKRYYPSLYQR 53 + Y +QA+ + +G A + + L D D+ K L R Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 54 YRSRINSHFISQWTRQLATLLSAQLPLAEALAISAEASPFCLQQQFILSINQDIKQGLSL 113 + R+++ ++ TRQLATL++A +PL EAL A+ S Q + ++ + +G SL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 114 SQSLKNTQH-FDATYIAMIQAGEVSGQLIDTLITLANDQERQTALKKRLNIALIYPVIIS 172 + ++K F+ Y AM+ AGE SG L L LA+ E++ ++ R+ A+IYP +++ Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 173 IFSCIITFAMLQFIVPQFKQFYAALNTPLPRLTELIL 209 + + + +L +VP+ + + + LP T +++ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLM 217 Score = 73.7 bits (181), Expect = 1e-17 Identities = 31/128 (24%), Positives = 67/128 (52%) Query: 63 ISQWTRQLATLLSAQLPLAEALAISAEASPFCLQQQFILSINQDIKQGLSLSQSLKNTQH 122 +++ R L+ L ++ +PL +A+ IS + + + +++G+SL ++L+ T Sbjct: 273 TARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAVREGVSLHKALEQTAL 332 Query: 123 FDATYIAMIQAGEVSGQLIDTLITLANDQERQTALKKRLNIALIYPVIISIFSCIITFAM 182 F MI +GE SG+L L A++Q+R+ + + L + L P+++ + ++ F + Sbjct: 333 FPPMMRHMIASGERSGELDSMLERAADNQDREFSSQMTLALGLFEPLLVVSMAAVVLFIV 392 Query: 183 LQFIVPQF 190 L + P Sbjct: 393 LAILQPIL 400
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 112 bits (282), Expect = 8e-32 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%) Query: 40 KKYRDKVHALVEPFLLRLPIIGAIKQKNRLNTFCRTLHILFNSDHHLPTSLTIAIKATNS 99 +K R H LL LP+IG I + + RTL IL S L ++ I+ ++ Sbjct: 248 EKRRVSFHRR----LLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSN 303 Query: 100 PQLIRQAATMCTELEQGTSLHQTLKNHSTFPNIALQMIHAGEHSHQLAIILKQLSALYES 159 + + + +G SLH+ L+ + FP + MI +GE S +L +L++ + + Sbjct: 304 DYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDR 363 Query: 160 ELTQTINTLIKLLEPLAIIIIGGLVGLIIIALYLPIFQLSHIL 202 E + + + L EPL ++ + +V I++A+ PI QL+ ++ Sbjct: 364 EFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406 Score = 41.0 bits (96), Expect = 2e-06 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 1/127 (0%) Query: 72 FCRTLHILFNSDHHLPTSLTIAIKATNSPQLIRQAATMCTELEQGTSLHQTLKNHST-FP 130 R L L + L +L K + P L + A + +++ +G SL +K F Sbjct: 73 LTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFE 132 Query: 131 NIALQMIHAGEHSHQLAIILKQLSALYESELTQTINTLIKLLEPLAIIIIGGLVGLIIIA 190 + M+ AGE S L +L +L+ E ++ P + ++ V I+++ Sbjct: 133 RLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSILLS 192 Query: 191 LYLPIFQ 197 + +P Sbjct: 193 VVVPKVV 199
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 117 bits (294), Expect = 7e-34 Identities = 58/141 (41%), Positives = 84/141 (59%), Gaps = 3/141 (2%) Query: 88 WHYFSLIILSYFLISLSFIDFYYRYLPDTLTLPLLWLGLLFNLCPTIHHCSINQAILGAV 147 W + ++L++ L++L+FID LPD LTLPLLW GLLFNL S+ A++GA+ Sbjct: 132 WGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGF--VSLGDAVIGAM 189 Query: 148 IGYCNLRLINLLFTRARNKQGLGGGDIKLFAALGAWFGLNSLPNILFIACLLGLSFSLAQ 207 GY L + F K+G+G GD KL AALGAW G +LP +L ++ L+G + Sbjct: 190 AGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGL 249 Query: 208 SLYQ-HRKITHIAFGPFLSLA 227 L + H + I FGP+L++A Sbjct: 250 ILLRNHHQSKPIPFGPYLAIA 270