>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 30.5 bits (68), Expect = 0.020 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 80 SRRSSAPRAAPNAPVS-AAMAASLAQTHAQPAAAPVMAVADPVSVPTAEPAQASDMAEAS 138 S +S+ R+ P VS A+AA LA A A + +P T +P QA++ AE++ Sbjct: 222 STTNSSVRSDPKFWVSVGAIAAGLAGLAATGIAQALALTPEPDDPTTTDPDQAANAAESA 281 Query: 139 SRDSYDSMADSAP 151 ++D A P Sbjct: 282 TKDQLTQEAFKNP 294
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.035 Identities = 7/17 (41%), Positives = 13/17 (76%) Query: 52 LLIQGPSGVGKSTLVKE 68 ++++G G+GKSTL+ Sbjct: 599 VVLEGTGGIGKSTLINT 615
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 31.1 bits (70), Expect = 0.007 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Query: 319 EVGLRLRYEIVRQFAPYIGVTWSRSYGKTADFIR 352 + L L Y + F PYIGV WSR+ AD IR Sbjct: 272 QASLALSYRL-NMFTPYIGVKWSRA-SFDADTIR 303
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 43.2 bits (101), Expect = 4e-06 Identities = 32/115 (27%), Positives = 41/115 (35%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A + G S AG + S + Sbjct: 870 STSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLI 929 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A + MAG A S AG +M G D S +A G+ Q Sbjct: 930 AGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQ 984 Score = 42.8 bits (100), Expect = 4e-06 Identities = 32/113 (28%), Positives = 40/113 (35%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G + + G A + MAG A S AG SMAG D S + Sbjct: 918 STSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLI 977 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 AG AG + AG A + AG G D S +A G+ Sbjct: 978 AGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGS 1030 Score = 40.5 bits (94), Expect = 2e-05 Identities = 33/115 (28%), Positives = 39/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G D + G AG + S+MAG AG AG D S + Sbjct: 198 STGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLI 257 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG AG D S AG A AG G D S +A G+ Q Sbjct: 258 AGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQ 312 Score = 40.5 bits (94), Expect = 2e-05 Identities = 29/102 (28%), Positives = 36/102 (35%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG + S +AG A + MAG A S AG SMAG D Sbjct: 915 GYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDS 974 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 S +AG AG + AG + A G+ Sbjct: 975 SLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTA 1016 Score = 40.1 bits (93), Expect = 3e-05 Identities = 31/109 (28%), Positives = 38/109 (34%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G A + G S AG + S +AG A + MAG A Sbjct: 899 GYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQTAREQS 958 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQNHPASET 487 S AG SMAG D S +AG G + A G+ Q S T Sbjct: 959 SLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSST 1007 Score = 39.7 bits (92), Expect = 4e-05 Identities = 31/113 (27%), Positives = 39/113 (34%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S M G A S AG SMAG D S +AG AG + Sbjct: 934 STQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLT 993 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 AG A + AG + AG D S +AG +G+ A G+ Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGS 1046 Score = 39.4 bits (91), Expect = 5e-05 Identities = 28/101 (27%), Positives = 39/101 (38%) Query: 378 GGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMD 437 G SMAG D S +AG AG + AG A + AG + AG D Sbjct: 962 AGYGSTSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGAD 1021 Query: 438 HSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 S +AG +G+ AG ++G+ A G+ Sbjct: 1022 SSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGS 1062 Score = 39.4 bits (91), Expect = 5e-05 Identities = 31/115 (26%), Positives = 37/115 (32%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G + M G AG AG D S +AG AG D S Sbjct: 214 STQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLT 273 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A AG AG D S +AG G + + A G+ Q Sbjct: 274 AGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQ 328 Score = 39.0 bits (90), Expect = 7e-05 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 1/98 (1%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG D S +AG AG + AG A + G S AG + Sbjct: 867 GYGSTSTAGYDSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYES 926 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 476 S +AG A + MAG + T +QS++ A Sbjct: 927 SLIAGYGSTQTASFKSTLMAGYG-SSQTAREQSSLTAG 963 Score = 38.6 bits (89), Expect = 8e-05 Identities = 32/115 (27%), Positives = 39/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G D + G AG D S AG A AG AG D S + Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLI 305 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG AG + ++ AG A AG G D S +A G+ Q Sbjct: 306 AGYGSTQTAGEESTQTAGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQ 360 Score = 38.6 bits (89), Expect = 9e-05 Identities = 32/115 (27%), Positives = 38/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G D G A AG AG D S +AG AG + ++ Sbjct: 262 STQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQT 321 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A AG AG D S +AG G D S A G+ Q Sbjct: 322 AGYGSTQTAQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 376 Score = 37.4 bits (86), Expect = 2e-04 Identities = 28/115 (24%), Positives = 37/115 (32%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S G + G A + G S AG D S +AG AG + Sbjct: 838 STQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLIAGYGSTQTAGYNSILT 897 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A + G S AG + S +AG + MA G+ Q Sbjct: 898 AGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQTASFKSTLMAGYGSSQ 952 Score = 37.4 bits (86), Expect = 2e-04 Identities = 29/115 (25%), Positives = 42/115 (36%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A + AG + AG D S + Sbjct: 966 STSMAGYDSSLIAGYGSTQTAGYQSTLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLI 1025 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG +G+ AG ++G+ AG ++G S A G+ Q Sbjct: 1026 AGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQ 1080 Score = 37.0 bits (85), Expect = 3e-04 Identities = 29/115 (25%), Positives = 39/115 (33%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A + G S AG D S + Sbjct: 822 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDSSLI 881 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG AG + AG A + G + G + S +A G+ Q Sbjct: 882 AGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYESSLIAGYGSTQ 936 Score = 36.7 bits (84), Expect = 3e-04 Identities = 29/95 (30%), Positives = 37/95 (38%) Query: 386 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 445 AG + +AG AG D + +AG AG + S+MAG AG Sbjct: 186 AGDSSTLIAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYG 245 Query: 446 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG D S +AG G D S A G+ Q Sbjct: 246 STGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQ 280 Score = 36.3 bits (83), Expect = 4e-04 Identities = 26/104 (25%), Positives = 36/104 (34%) Query: 371 GMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDH 430 G MAG S+ A AG + MAG D +AG ++ AG Sbjct: 931 GYGSTQTASFKSTLMAGYGSSQTAREQSSLTAGYGSTSMAGYDSSLIAGYGSTQTAGYQS 990 Query: 431 GSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMA 474 AG ++ A AG + AG D + G S + Sbjct: 991 TLTAGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTS 1034 Score = 36.3 bits (83), Expect = 5e-04 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG D S +AG AG + AG A + G S AG D Sbjct: 819 GYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQENSDLTTGYGSTSTAGYDS 878 Query: 439 SKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAA 475 S +AG AG + AG T + S++ Sbjct: 879 SLIAGYGSTQTAGYNSILTAGYG-STQTAQENSDLTT 914 Score = 35.5 bits (81), Expect = 9e-04 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 10/123 (8%) Query: 368 SDMGMDHGSMG--GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S + +GS G D +AG ++ AG + AG ++ A AG + Sbjct: 622 SVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTST 681 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMA--------GMDHGNMTGMDQSNMAASG 477 AG D +AG ++ AG + AG ++ A G + G D S +A G Sbjct: 682 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLIAGYG 741 Query: 478 AMQ 480 + Q Sbjct: 742 STQ 744 Score = 35.1 bits (80), Expect = 0.001 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 368 SDMGMDHGSMG--GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMA--------GMDHGSM 417 SD+ +GS G G D +AG ++ A AG ++ A G S Sbjct: 574 SDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTST 633 Query: 418 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASG 477 AG D S +AG AG + AG A AG + G D S +A G Sbjct: 634 AGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTAGYGSTSTAGADSSLIAGYG 693 Query: 478 AMQ 480 + Q Sbjct: 694 STQ 696 Score = 34.7 bits (79), Expect = 0.001 Identities = 30/115 (26%), Positives = 37/115 (32%) Query: 366 SMSDMGMDHGSMGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S S G D + G AG + AG A +G S AG D S + Sbjct: 678 STSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGSDLTSGYGSTSTAGADSSLI 737 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 AG A S AG A G + G D S +A G+ Q Sbjct: 738 AGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQ 792 Score = 34.7 bits (79), Expect = 0.001 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 368 SDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S + +GS H S +AG + +++ G +AG S+ AG ++G D +M Sbjct: 1070 SSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQM 1129 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGM-------DHSKMAGMDHGNMTGMDQSNMAA 475 AG +AG D ++ AG +AG D SK+ + + D+S + A Sbjct: 1130 AGERGKLIAGADSTQTAGDRSKLLAGNNSYLTAGDRSKLTAGNDCILMAGDRSKLTA 1186 Score = 34.3 bits (78), Expect = 0.002 Identities = 25/93 (26%), Positives = 38/93 (40%) Query: 386 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 445 AG + AG D +AG ++ AG D AG ++ A AG + AG D Sbjct: 242 AGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGSDLTAGYGSTGTAGAD 301 Query: 446 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 +AG ++ AG + G + A G+ Sbjct: 302 SSLIAGYGSTQTAGEESTQTAGYGSTQTAQKGS 334 Score = 34.3 bits (78), Expect = 0.002 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 368 SDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKM 425 S + +GS GS AG + AG D +AG ++ AG + AG ++ Sbjct: 270 SSLTAGYGSTQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYGSTQT 329 Query: 426 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 A AG + AG D +AG ++ AG D G + A G+ Sbjct: 330 AQKGSDLTAGYGSTGTAGDDSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS 382 Score = 34.0 bits (77), Expect = 0.002 Identities = 25/94 (26%), Positives = 39/94 (41%) Query: 385 MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGM 444 +AG + AG D +AG ++ AG + MAG ++ AG + AG Sbjct: 193 IAGYGSTGTAGADSTLVAGYGSTQTAGEESSQMAGYGSTQTGMKGSDLTAGYGSTGTAGD 252 Query: 445 DHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 D +AG ++ AG D G + A G+ Sbjct: 253 DSSLIAGYGSTQTAGEDSSLTAGYGSTQTAQKGS 286 Score = 34.0 bits (77), Expect = 0.003 Identities = 25/87 (28%), Positives = 29/87 (33%) Query: 394 AGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMD 453 +G S AG D S +AG A S AG A G S AG D Sbjct: 722 SGYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGAD 781 Query: 454 HSKMAGMDHGNMTGMDQSNMAASGAMQ 480 S +AG G A G+ Q Sbjct: 782 SSLIAGYGSTQTAGYHSILTAGYGSTQ 808 Score = 33.6 bits (76), Expect = 0.003 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 373 DHGS--MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDH 430 +H S G + AG D S +AG +G+ AG ++G+ AG Sbjct: 1003 EHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGYGS 1062 Query: 431 GSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 ++G S AG +A S +AG + +TG +A G+ Q Sbjct: 1063 SLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGKGSSQ 1112 Score = 32.8 bits (74), Expect = 0.005 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 386 AGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMD 445 AG ++ A AG + AG D +AG S +G+ AG + ++G+ Sbjct: 994 AGYGSTQTAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLR 1053 Query: 446 HGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 476 AG S ++G ++T SN AS Sbjct: 1054 SVLTAGYGSSLISGR-RSSLTAGYGSNQIAS 1083 Score = 32.4 bits (73), Expect = 0.007 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 2/115 (1%) Query: 366 SMSDMGMDHGSMGGMDHGS--MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHS 423 S + +GS S G + AG D +AG ++ AG + AG + Sbjct: 604 YHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGST 663 Query: 424 KMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGA 478 + A AG + AG D +AG ++ AG + G + A G+ Sbjct: 664 QTAQEGSDLTAGYGSTSTAGADSSLIAGYGSTQTAGYNSILTAGYGSTQTAQEGS 718 Score = 32.4 bits (73), Expect = 0.007 Identities = 25/81 (30%), Positives = 27/81 (33%) Query: 379 GMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDH 438 G S AG D S +AG A S AG A G S AG D Sbjct: 723 GYGSTSTAGADSSLIAGYGSTQTASYHSSLTAGYGSTQTAREQSVLTTGYGSTSTAGADS 782 Query: 439 SKMAGMDHGSMAGMDHSKMAG 459 S +AG AG AG Sbjct: 783 SLIAGYGSTQTAGYHSILTAG 803 Score = 30.9 bits (69), Expect = 0.023 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%) Query: 377 MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGM 436 + G AG + ++G D MAG +AG D AG D SK+ ++ + Sbjct: 1105 IAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAG-DRSKLLAGNNSYLTAG 1163 Query: 437 DHSKM-AGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAAS 476 D SK+ AG D MAG D SK+ + +T +S + S Sbjct: 1164 DRSKLTAGNDCILMAG-DRSKLTAGINSILTAGCRSKLIGS 1203 Score = 30.5 bits (68), Expect = 0.030 Identities = 22/96 (22%), Positives = 35/96 (36%) Query: 385 MAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGM 444 A + AG + AG D S +AG +G+ AG ++G+ AG Sbjct: 1001 TAEHSSTLTAGYGSTATAGADSSLIAGYGSSLTSGIRSFLTAGYGSTLISGLRSVLTAGY 1060 Query: 445 DHGSMAGMDHSKMAGMDHGNMTGMDQSNMAASGAMQ 480 ++G S AG + S +A + Q Sbjct: 1061 GSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQ 1096 Score = 30.1 bits (67), Expect = 0.037 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 377 MGGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGMDHSKMAGMDHGSMAGM 436 + G+ AG S ++G AG +++A +AG + +++ G +AG Sbjct: 1049 ISGLRSVLTAGYGSSLISGRRSSLTAGYGSNQIASHRSSLIAGPESTQITGNRSMLIAGK 1108 Query: 437 DHSKMAGMDHGSMAGMDHSKMAGMDHGNMTGMDQSNMAA 475 S+ AG ++G D +MAG + G + S A Sbjct: 1109 GSSQTAGYRSTLISGADSVQMAG-ERGKLIAGADSTQTA 1146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 7e-24 Identities = 36/117 (30%), Positives = 63/117 (53%) Query: 2 KLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGWE 61 +LVA+D+ I L Q L+ AG+ V ++ + DL++ DV+MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118 +L ++ A ++PVL ++A++ +K E GA DYL KPF +EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.027 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 22/104 (21%) Query: 356 VSNILSNALRYTPEGHDIAVRIVEAADQVNLSVQNNGATIDPEHINKIFDRFYRADPARR 415 V N + + + P+G I ++ + V L V+N G Sbjct: 264 VENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-------------------SLAL 304 Query: 416 EGSPSNAGLGLAITRSIIEAHGG---RIWCTSADGVTSFHIALP 456 + + + G GL R ++ G +I + G + + +P Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.005 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 12/103 (11%) Query: 310 AARRAQVRQLEDEQEAALREHKAQLETDLADYQR----LQRAVQRSRETLLPLAEDRVRL 365 ++ L EQ + + K Q E +L + + + R Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDF 240 Query: 366 ALADYRAGKSPLSEVLTARRQRVETRLQDIDLQGQLAATAARL 408 + + VL + VE +L ++L Sbjct: 241 S-SLLHKQAIAKHAVLEQENKYVE-------AVNELRVYKSQL 275
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 1e-07 Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 37/226 (16%) Query: 134 ERTYGRATGDVVAKGAPLADVLTPEWAGLQEEYLALQRSGDNELRAAARQRLLLAGMPAD 193 E Y A ++ + L + E +EEY + + NE+ RQ Sbjct: 258 ENKYVEAVNELRVYKSQLEQ-IESEILSAKEEYQLVTQLFKNEILDKLRQTTDNI---GL 313 Query: 194 LINRIDRTGRVQNSVTLLAPTAGVLQALELR-PGMTMTPGATLAKINGIANV-WLEAAVP 251 L + + Q + + AP + +Q L++ G +T TL I + + A V Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 252 EAQAQGLQEGQAVQANLAAFPGE---PVPGKLTALLADADLQSRT---LRLRIELP---- 301 + GQ + AFP + GK+ + DA R + I + Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCL 433 Query: 302 ---NPGGRLRPGMTAQVSLHPSGQQDDSLLVPAEAIIRTGKRDLVM 344 N L GM A I+TG R ++ Sbjct: 434 STGNKNIPLSSGM------------------AVTAEIKTGMRSVIS 461 Score = 29.0 bits (65), Expect = 0.041 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 5/97 (5%) Query: 103 GQLARTLQVSGVLTFDERDFSVLQARTGGYVERTYGRATGDVVAKGAPLADVLTPEWAGL 162 GQ+ +G LT R + + V+ + G+ V KG L + G Sbjct: 78 GQVEIVATANGKLTHSGRSKEI-KPIENSIVKEIIVK-EGESVRKGDVLLKLTAL---GA 132 Query: 163 QEEYLALQRSGDNELRAAARQRLLLAGMPADLINRID 199 + + L Q S R ++L + + + + Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 669 bits (1728), Expect = 0.0 Identities = 207/1056 (19%), Positives = 428/1056 (40%), Gaps = 47/1056 (4%) Query: 5 LIRWSVGNRVLVLLATLFAVAWGVFSLRSLPIDALPDLSDVQVIIRTSYPGQAPQIVENQ 64 + + + + + + + G ++ LP+ P ++ V + +YPG Q V++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTYPLTTTMLSVPGAKTVRGFSA-FGDSFVYVLFEDGTDLYWARSRVLEYLSQVQSRLPA 123 VT + M + + S G + + F+ GTD A+ +V L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 SAK-PVLGPDATGVGWIYQYALVDRSGTHDLAQLRSLQDWFLRFELKTLPDVAEVATIGG 182 + + + + ++ V + + ++ L L V +V G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 183 MVKQYQVVLDPLRMASLGITQVEVSDAIAKANQETGGG------VLEQGEAEFMVRASGY 236 ++ LD + +T V+V + + N + G L + + A Sbjct: 181 Q-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 237 LKSLDDFRAIPLRLAAKGIPVTLGDVATVQLGPEARRGIGELDGQGEAVGGVVILRSGKN 296 K+ ++F + LR+ + G V L DVA V+LG E I ++G+ A G + L +G N Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGAN 298 Query: 297 AKDAIAHVKSKLESLEKSLPAGVELVTTYDRSQLIDRAVENLSQKLIEEFIVVALVCAAF 356 A D +K+KL L+ P G++++ YD + + ++ + + L E ++V LV F Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 357 LWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAIAIGAMVDAAVVMIENAHK 416 L ++R++L+ +++PV +L ++ G + N +++ G+ +AIG +VD A+V++EN + Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 417 RVEAWHTWHPGKSLRGEDHWKVMTEAAVEVGPALFFSLMIITLSFIPVFTLQAQEGRLFA 476 + + ++ ++ AL M+++ FIP+ G ++ Sbjct: 419 VMME----------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYR 468 Query: 477 PLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGRLPAEERNP------LNRTLIRL---YRP 527 + T AMA + +++ L P L ++ N N T Y Sbjct: 469 QFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTN 528 Query: 528 ALEIVLRRPKLTLAGALLILLSSVWPLSQLGGEFLPPLDEGDLLYMPTALPGLSAQKASE 587 ++ +L L LI+ V +L FLP D+G L M G + ++ + Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 588 LLQRTDR--LIRTVPEVASVFGKAGRAESATDPAPLEMFETTVRLKPKDQW-RAGMTTEK 644 +L + L V SVF G + S F V LKP ++ + E Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEA 645 Query: 645 LIEELDRTVQVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSNLNEI-DRVTLAIEKV 703 +I + + + +++ + AG + + + Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 704 AKTVPGVTSALAERLTGGRYIDLDIDRQFAARYGLNIADVQAIVAGAVGGENIGETVEGL 763 A+ + S L L++D++ A G++++D+ ++ A+GG + + ++ Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 764 ARYPISVRYPREWRDSVDALRQLPIYTSQGGRITLGTVARVRIADGPPMLKSENARPSGW 823 + V+ ++R + + +L + ++ G + G P L+ N PS Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825 Query: 824 VYIDVR-RRDLSSVVADLRRLVDQQVKLDPGISLSYSGQFEYLERANARLAWVVPATLAI 882 + + +A + L KL GI ++G + + +V + + Sbjct: 826 IQGEAAPGTSSGDAMALMENLAS---KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVV 882 Query: 883 IFVLLYLTFGRLGEALLIMATLPFALTGGVWLLYMMGYNLSVATGVGFIALAGVAAEFGV 942 +F+ L + + +M +P + G + + V VG + G++A+ + Sbjct: 883 VFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAI 942 Query: 943 IMLIYLNNAWTERNGNGTQGQPALLDAIREGAVQRIRPKAMTVAVIVAGLMPILWSSGTG 1002 +++ + + E+ G G +A R+RP MT + G++P+ S+G G Sbjct: 943 LIVEFAKDLM-EKEGKGVV------EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 1003 SEVMSRIAVPMVGGMLTAPLLSLFVIPAAYWLVRRR 1038 S + + + ++GGM++A LL++F +P + ++RR Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 82.2 bits (203), Expect = 7e-18 Identities = 97/524 (18%), Positives = 183/524 (34%), Gaps = 54/524 (10%) Query: 4 NLIRWSVGNRVLVLLATLFAVAWGVFSLRSLPIDALPDLSDVQVIIRTSYPGQAP----Q 59 N + +G+ LL VA V LP LP+ + P A Q Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 60 IVENQVT-YPLTTTMLSVPGAKTVRGFSAFG----DSFVYVLFEDGTDLYWARSRVLEYL 114 V +QVT Y L +V TV GFS G +V + + + + Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 115 SQVQSRL---------PASAKPVLGPDATGVGWIYQYALVDRSGTHDLAQLRSLQDWFLR 165 + + L P + ++ + + L+D++G L ++ L Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATG---FDFELIDQAGL-GHDALTQARNQLLG 703 Query: 166 FELKTLPDVAEV-ATIGGMVKQYQVVLDPLRMASLGITQVEVSDAIAKA-NQETGGGVLE 223 + + V Q+++ +D + +LG++ +++ I+ A ++ Sbjct: 704 MAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID 763 Query: 224 QGEA-EFMVRA-SGYLKSLDDFRAIPLRLAAKGIPVTLGDVATVQLGPEARRGIGELDGQ 281 +G + V+A + + +D + +R +A G V T + R + +G Sbjct: 764 RGRVKKLYVQADAKFRMLPEDVDKLYVR-SANGEMVPFSAFTTSHWVYGSPR-LERYNGL 821 Query: 282 GEAVGGVVILRSGKNAKDAIAHVKSKLESLEKSLPAGVELVTTYDRSQLIDRAVENLSQK 341 G ++ DA+A +E+L LPAG+ S + Sbjct: 822 PSMEIQGEAA-PGTSSGDAMA----LMENLASKLPAGIGY-DWTGMSYQERLSGNQAPAL 875 Query: 342 LIEEFIVVALVCAAFLWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAIAIG 401 + F+VV L AA + ++ +P+G++ L+ ++ + G+ IG Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 402 AMVDAAVVMIENAHKRVEAWHTWHPGKSLRGEDHWKVMTEAAVEVG-----PALFFSLMI 456 A++++E A +E GK + EA + P L SL Sbjct: 936 LSAKNAILIVEFAKDLME-----KEGKGVV---------EATLMAVRMRLRPILMTSLAF 981 Query: 457 ITLSFIPVFTLQAQEGRLFAPLAFTKTYAMAAAAGLSVTLVPVL 500 I L +P+ + M +A L++ VPV Sbjct: 982 I-LGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Score = 72.2 bits (177), Expect = 8e-15 Identities = 86/548 (15%), Positives = 189/548 (34%), Gaps = 73/548 (13%) Query: 530 EIVLRRPKLTLAGALLILLSSVWPLSQLGGEFLPPLDEGDLLYMP-----TALPGLSAQK 584 +RRP A++++++ + QL P + P PG AQ Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIA------PPAVSVSANYPGADAQT 56 Query: 585 -ASELLQRTDRLIRTVPEVASVFGKAGRAESATDPAPLEMFETTVRLKP-----KDQWRA 638 + Q ++ + + + + + A S T T+ + Q + Sbjct: 57 VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVT---------ITLTFQSGTDPDIAQVQV 107 Query: 639 GMTTEKLIEELDRTVQVPGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSNLNEIDRVTL 698 + L + VQ G++ ++ ++ G + D Sbjct: 108 QNKLQLATPLLPQEVQQQGIS----------VEKSSSSYLMVAGFVSDNPGTTQDDISDY 157 Query: 699 AIEKVA---KTVPGVTSALAERLTGGRY-IDLDIDRQFAARYGLNIADV--------QAI 746 V + GV +L G +Y + + +D +Y L DV I Sbjct: 158 VASNVKDTLSRLNGVGDV---QLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQI 214 Query: 747 VAGAVGGENIGETVEGLARYPISVRYPREWRDSVDALRQLPIYTSQ-GGRITLGTVARVR 805 AG +GG + A R+ + + ++ + + G + L VARV Sbjct: 215 AAGQLGGTPALPGQQLNASIIAQTRF-----KNPEEFGKVTLRVNSDGSVVRLKDVARVE 269 Query: 806 I-ADGPPMLKSENARPSGWVYIDVRRRDLSSVVADL--RRLVDQQVKLDPGISLSYSGQF 862 + + ++ N +P+ + I + + A +L + Q G+ + Y + Sbjct: 270 LGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP--Y 327 Query: 863 EYLERANARLAWVVPATL---AIIFVLLYLTFGRLGEALLIMATLPFALTGGVWLLYMMG 919 + + VV ++F+++YL + L+ +P L G +L G Sbjct: 328 DTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 920 YNLSVATGVGFIALAGVAAEFGVIMLIYLNNAWTERNGNGTQGQPALLDAIREGAVQRIR 979 Y+++ T G + G+ + ++++ N + + A ++ + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVV---ENVERVMMEDKLPPKEATEKSMSQIQ----G 440 Query: 980 PKAMTVAVIVAGLMPILWSSGTGSEVMSRIAVPMVGGMLTAPLLSLFVIPA-AYWLVRRR 1038 V+ A +P+ + G+ + + ++ +V M + L++L + PA L++ Sbjct: 441 ALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPV 500 Query: 1039 GLAVHDNP 1046 H+N Sbjct: 501 SAEHHENK 508
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 3e-19 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 2 RVLVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLPGIDGWD 61 +LV +D+ L Q LS +GY V I N LV+ DV +P + +D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLETIRKT-SRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARI-RSLQRR 117 LL I+K + +++++A+ +K + GA DYL KPF+ EL+ I R+L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 806 bits (2084), Expect = 0.0 Identities = 234/1064 (21%), Positives = 433/1064 (40%), Gaps = 59/1064 (5%) Query: 5 IIRFAIEQRIVVMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64 + F I + I + +I+ G + +LP+ P I V ++ PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITFPVETAMAGLPGLQQTRSLSRS-GLSQVTVIFKDGTDIFFARQLINERLQVAKEQLPE 123 +T +E M G+ L S S S G +T+ F+ GTD A+ + +LQ+A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEAVMGPVSTGLGEIFLWTVEAEDGAVKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAE 183 V+ V +L D T D+ +K L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 INTIGGYAKQFLVAPDPKRLATYKLTLNDLVAALESNNANVGAGYI------ERNGEQLL 237 + G + D L YKLT D++ L+ N + AG + Sbjct: 175 VQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 IRAPGQVGNIEDIANIVI-TSVDGAPIRISSVADVSIGKELRTGAATENGREVVLGTVFM 296 I A + N E+ + + + DG+ +R+ VA V +G E A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LIGENSRTVSQAVAAKLADINRTLPKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILVIA 356 G N+ ++A+ AKLA++ P+G+ + YD T V+ +I V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 ILFLFLGNIRAALITAMVIPLSMLFTFTGMFNNKVSANLMSLG--ALDFGIIVDGAVVIV 414 +++LFL N+RA LI + +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENAIRRLAHAQHKHGRMLTKTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEG 474 EN R + K + + + L+ +++ V++P+ G G Sbjct: 414 ENVERVMMED---------KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAFTVVMALLGAMVLSVTFVPAAIAMFVTGKVKEEEGVVMRTARL---------- 524 ++ + T+V A+ ++++++ PA A + E Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 525 RYEPVLQWVLGHRNIAFSAAVALVVLSGLLASRMGSEFIPSLSEGDFAMQAMRVPGTSL- 583 Y + +LG +V +L R+ S F+P +G F G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 584 -TQSVEMQQRLEKAVIAQVPEVERMFARSGTAEIASDPMPPNASDAYIMLKPQDQWPNPK 642 TQ V + Q + + + VE +F +G + NA A++ LKP ++ + Sbjct: 585 RTQKV-LDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 643 KPRDELIAEVQKAAAGVPGSNYELSQPIQLRFNELISGVRSDVA-VKVFGDDMDVLNNTA 701 + +I + + EL + D + G D L Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNM--PAIVELGTATGFDFELIDQAGLGHDALTQAR 698 Query: 702 NKIAAALKAVPGS-SEVKVEQTSGLPVLTINIDREKAARYGLNIADVQNSIAIAVGGRQA 760 N++ P S V+ + +D+EKA G++++D+ +I+ A+GG Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 761 GTLYEGDRRFDMVVRLPETVRTDVAGMSSLLIPVPANAAQGANQIGFIPLSQVANLDLQL 820 + R + V+ R + L V + + +P S Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKL--YVRSANGE------MVPFSAFTTSHWVY 810 Query: 821 GPNQISRENGKRLVIVSANVRGRDLGSFVEEATASLDK-KVQIPAGYWTTWGGQFEQLQS 879 G ++ R NG + + G+ +A A ++ ++PAG W G Q + Sbjct: 811 GSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERL 867 Query: 880 AAKRLQIVVPVALLLVMTLLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSISAG 939 + + +V ++ ++V L ++ + + V +P + G ++A L + + Sbjct: 868 SGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFM 927 Query: 940 VGFIALSGVAVLNGLVMIAFIRGLRE-EGRTLRQAVDEGALTRLRPVLMTALVASLGFIP 998 VG + G++ N ++++ F + L E EG+ + +A RLRP+LMT+L LG +P Sbjct: 928 VGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 999 MALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYHWAHRK 1042 +A++ G G+ Q + V+GG++S+T L + +P + R Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.1 bits (112), Expect = 8e-08 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 149 ASQQISDLRSEQQAAQRRVELARVTFEREKQLWQDKISAEQDYLQARQALQEAEISLANA 208 A ++ +S+ + + + A+ ++ QL++++I Q + + LA Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL--DKLRQTTDNIGLLTLELAKN 321 Query: 209 KQKVGAIGASVNSVGGNRYELRAPFDAVVVE-KHLTVGEVVSEATNAFILSDLNQV-WAT 266 +++ +RAP V + K T G VV+ A ++ + T Sbjct: 322 EERQQ------------ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVT 369 Query: 267 FAVPPTDLGKVTTGRAVKV 285 V D+G + G+ + Sbjct: 370 ALVQNKDIGFINVGQNAII 388 Score = 39.4 bits (92), Expect = 2e-05 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 88 AGVALEAAAPRDLGTVVSFPGEIRFDEDRTAHVVPRVPGVVEAVQANLGETVKKGQVLAV 147 +A + + V + G++ + P +V+ + GE+V+KG VL Sbjct: 68 LVIAFILSVLGQVEIVATANGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLK 126 Query: 148 IASQQISDLRSEQQAAQRRVELARVTFER---------EKQLWQDKISAEQDYLQARQAL 198 + + ++ Q + AR+ R +L + K+ E + + Sbjct: 127 LTALG---AEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 199 QEAEISLANA 208 SL Sbjct: 184 VLRLTSLIKE 193
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.008 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 8/174 (4%) Query: 170 GRVRAGKSSPVEATRAQVQLAEAQLQVRRAETEKATAYQQLAQITGSSVTVFDRLESPTL 229 V S V+A ++A++ + + +T + + + + V E P + Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 230 SPGLPPRTEDLLAKLDQTAEMRQ--AVVQIDKSDASLGSEKAQRIPNLTVSVGSQYDRSV 287 + + P+ E Q R+ V I + + + P S +V Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS------SNV 1179 Query: 288 RERVNTVGLSMPLPLFDRNQGNILSASRRADQARDQRNAVELRLRTETQTALNQ 341 + V N N A+ + + N + R R ++ + Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHN 1233
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.8 bits (189), Expect = 1e-18 Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 2 RILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGWQ 61 ILV +D+ + Q L+ GY V + + +L++ D+ +P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARV-RALMRRSD 120 +L +++ +++++A++ ++ E GA DYL KPF+ EL+ + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 HPASVEVIR 129 P+ +E Sbjct: 125 RPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 5e-17 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 6/152 (3%) Query: 3 VLIVDDEPQARERLTRLFAELEGYTVLEPSATNGEEALALIESLKPDVVLLDIGMPGLDG 62 +L+ DD+ R L + GY V +N I + D+V+ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQAL-SRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 63 LQVAARLCEREAPPSVVFCTG--DDEYGAEAFTDSTLSHVTKPIHPHALRDALRKAEKPS 120 + R+ + V+ + +A ++ KP L + +A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 RTQLAALTRPGSEGGGPRSHISARTRKGIELI 152 + + + L +G SA ++ ++ Sbjct: 123 KRRPSKLEDDSQDGMPLVGR-SAAMQEIYRVL 153
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 118 bits (298), Expect = 3e-35 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 6/219 (2%) Query: 7 IGLCLVAPIALAAPESAPASDHDVAYSLGASLGERLRQEVPGLQLEALVEGLRQSYQNQP 66 +GL + +A S ++YS+GA LG+ + + + + L +G++ Sbjct: 11 MGLAMSTAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQ 70 Query: 67 LKLDKARMQAILQQHEEQ---ANNAAVQAEVEKLQAIEARFMANERARAGVHELPEGVLY 123 L L + +M+ +L + ++ +A + E+ +A F++ +++ G+ LP G+ Y Sbjct: 71 LILTEEQMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDAFLSANKSKPGIVVLPSGLQY 130 Query: 124 SELKSGIGAQPSPKGKVQVRYVGRLPDGTVFDQNQ---QPQWFGLDSVIEGWQVALPHMK 180 + +G GA+P V V Y G L DGTVFD + +P F + VI GW AL M Sbjct: 131 KIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMP 190 Query: 181 TGAKWRLVIPSAQAYGAEGAGDLIAPYTPLVFEIELLAV 219 G+ W + +P+ AYG G I P L+F+I L++V Sbjct: 191 AGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 54.3 bits (130), Expect = 4e-10 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 10/205 (4%) Query: 131 DQRAVAAKS---AKPATAKAPARAAAKPAARPAAKAAAKAPAKAAAAKAPSRAAAAKPAA 187 D +V + + A+ A P A A P+ + A+ + + + A + A Sbjct: 1006 DVPSVPSNNEEIARVDEAPVPPPAPATPSET--TETVAENSKQESKTVEKNEQDATETTA 1063 Query: 188 AKAPAKVAAKPAAKPVAAKAAAAKAPSRAAAVKPAATKAPAKVAAAKPAAKPATSRGAAA 247 AK K A++ S + TK A V + AK T + Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE-KAKVETEKTQEV 1122 Query: 248 KPAAAKAPAKTTAAKPAAKAAAKPAAKPAAKAPAKPAAKPAAAKPAANKPAE---PKPAT 304 ++ K ++ + A+PA + K +PA+ Sbjct: 1123 PKVTSQVSPKQEQSE-TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 305 PAVTNSAGPAIPAPSSAPASTSPQT 329 P ++ + P +T+P T Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPAT 1206 Score = 49.7 bits (118), Expect = 1e-08 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 6/198 (3%) Query: 136 AAKSAKPATAKAPARAAAKPAARPAAKAAAKAPAKAAAAKAPSRAAAAKPAAAKAPAKVA 195 K + A P+ + + A+ A P A A + A+ Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE-N 1043 Query: 196 AKPAAKPVAAKAAAAKAPSRAAAVKPAATKAPAKVAAAKPAAKPATSRGAA--AKPAAAK 253 +K +K V A + + A +A + V A + A S + K Sbjct: 1044 SKQESKTVEKNEQDATETTAQN--REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 254 APAKTTAAKPAAKAAAKPAAKPAAKAPAKP-AAKPAAAKPAANKPAEPKPATPAVTNSAG 312 A + A K P + P + +P A E P + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 313 PAIPAPSSAPASTSPQTP 330 A + PA + Sbjct: 1162 TNTTADTEQPAKETSSNV 1179 Score = 42.0 bits (98), Expect = 3e-06 Identities = 35/251 (13%), Positives = 73/251 (29%), Gaps = 14/251 (5%) Query: 37 AEKLLAKLEKQRGKAQEKLHNGRLKLQDAAKAGKAKAQGKAQKAIGELESLLDSLKERQT 96 +E E + +++ K + + AQ E+ + QT Sbjct: 1034 SETTETVAENSKQESKTV-----------EKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 97 QTRTYIQQLKRDAQESLKLAQGVGKVREAAGKALDQRAVAAKSAKPATAKAPARAAAKPA 156 ++ Q + + E A ++ K + K +P Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 157 ARPAAKAAAKAPAKAAAAKAPSRAAAAKPAAAKAPAKVAAKPAAKPVAAKAAAAKAP--S 214 A PA + K ++ + A +PA + + V + + P + Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 215 RAAAVKPAATKAPAKVAAAKPAAKPATSRGAAAKPAAAKAPAKTTAAKPAAKAAAKPAAK 274 A +P + + + S +PA + ++T A + A Sbjct: 1203 TPATTQPTVNSESSNKPKNR-HRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVL 1261 Query: 275 PAAKAPAKPAA 285 A+A A+ A Sbjct: 1262 SDARAKAQFVA 1272
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.2 bits (83), Expect = 4e-04 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 12/117 (10%) Query: 529 ASNAPVNPDKTDKKAQRQAAAALR---QQLAPHKKAADK----LEAELNQVHAQLAEIET 581 NA + D A R+A L Q+L K ++ L +L+ ++E Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEA 365 Query: 582 ALG----DSGLYEVARKDELRDLLARQSKLKQREGELEEGWMQALETLESMQAELEA 634 + + E +R+ RDL A + KQ E LEE + L LE + ELE Sbjct: 366 EHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSK-LAALEKLNKELEE 421
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 28.8 bits (64), Expect = 0.036 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 134 RAGVQAGDLIVKINGAPTR-GQSMTEAVDKMRGKVGEKITLTLVRDG 179 R G+Q D+ V +NG R + +A+++M TLT+ RDG Sbjct: 215 RVGLQDNDMAVALNGLDLRDAEQAKKAMERMADV--HNFTLTVERDG 259
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 49.3 bits (117), Expect = 2e-08 Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 16/258 (6%) Query: 19 ADERAQTQQQLDATRQDIAELKKTLGKLQEEKSGVQKDLKATETDIGNLEKQVEALQQEL 78 + + D ++++ K+ L K + S ++ E +LEK +E Sbjct: 77 SFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFS 136 Query: 79 KKTEGELERLDTEKKKLQSSRIEQQRLI-----AIQARSAYQNNGREEYLKLLLNQQNPE 133 +++ L+ EK L + + + ++ + A SA E L Q E Sbjct: 137 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 196 Query: 134 KFARTLSYYDYLSKAR-----------MEQLRAFNETLRQLANVEQDISRQQEQLLAQRA 182 K + A+ + + L N S + + L A++A Sbjct: 197 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 183 DLDSRRQALEAERGKRQQVLAKLNSDMKDRDKKLQAREQDQADLAKVLKTIEETLARQAR 242 L++R+ LE ++ +K + + A E ++ADL + + R Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316 Query: 243 EAEEARKKALLAEQEAQK 260 + + +R+ E E QK Sbjct: 317 DLDASREAKKQLEAEHQK 334 Score = 39.7 bits (92), Expect = 2e-05 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 24/249 (9%) Query: 17 AFADERAQTQQQLDATRQDIAELKKTLGKLQEEKSGVQKDLKATETDIGNLEKQVEALQQ 76 + ++ + A L+ +L++ G A I LE + AL+ Sbjct: 236 GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEA 295 Query: 77 ELKKTEGELERLDTEKKKLQSSRIEQQRLIAIQARSAYQNNGREEYLKLLLNQQNPEKFA 136 E E + + L+ ++ L+ + E+ KL + E Sbjct: 296 EKADLEHQSQVLNANRQSLRRDLDASREAKK---------QLEAEHQKLEEQNKISEASR 346 Query: 137 RTLSYYDYLSKARMEQLR-AFNETLRQLANVEQDISRQQEQLLAQRADLDSRRQALE--- 192 ++L ++ R A + + +E+ + + R DLD+ R+A + Sbjct: 347 QSLR-------RDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVE 399 Query: 193 ---AERGKRQQVLAKLNSDMKDRDK-KLQAREQDQADLAKVLKTIEETLARQAREAEEAR 248 E + L KLN ++++ K + + + QA L K ++E LA+QA E + R Sbjct: 400 KALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLR 459 Query: 249 KKALLAEQE 257 Q Sbjct: 460 AGKASDSQT 468 Score = 38.5 bits (89), Expect = 4e-05 Identities = 50/282 (17%), Positives = 98/282 (34%), Gaps = 21/282 (7%) Query: 21 ERAQTQQQLDATRQDIAELKKTLGKLQEEKSGVQKDLKATETDIGNLEKQVEALQQELKK 80 +A+ ++ L+ + L+ EK+ + E + A ++K Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 81 TEGELERLDTEKKKLQSSRIEQQRLIA-----IQARSAYQNNGREEYLKLLLNQQNPEKF 135 E E L+ + +L+ + I+ A + E L Q Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 136 ARTLSYYDYLSKARMEQLRAFNETLRQLANVE----QDISRQQEQLLAQRADLDSRRQAL 191 ++L S+ +QL A ++ L + + Q + R + + L++ Q L Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKL 370 Query: 192 EAERGKRQQVLAKLNSDM-------KDRDKKLQAREQDQADLAKVLKTIEETLARQAREA 244 E + + L D+ K +K L+ A L K+ K +EE+ + Sbjct: 371 EEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESK-----KL 425 Query: 245 EEARKKALLAEQEAQKRRQQQALAAQQDSEPPKKARTTLGPL 286 E K L A+ EA+ + ++ LA Q + +A Sbjct: 426 TEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQ 467
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 211 bits (539), Expect = 2e-73 Identities = 79/160 (49%), Positives = 111/160 (69%), Gaps = 4/160 (2%) Query: 1 MTDQQTNGAAAEDNS--PQFSMQRIYVRDLSFEAPKSPQIFRQTWEPSVALDLNTKQKAL 58 M+++ AA + P +QRIYV+D+SFEAP P IF+Q WEP ++ DL+T+ K + Sbjct: 1 MSEENQVNAADTQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQDWEPKLSFDLSTEAKQV 60 Query: 59 EGDFHEVVLTLSV--TVKNGDEVAFIAEVQQAGIFLIKNLDASSMSHTLGAFCPNILFPY 116 D +EV L +SV T+++ +VAFI EV+QAG+F I L+ M+H L + CPN+LFPY Sbjct: 61 GDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPY 120 Query: 117 ARETLDSLVTRGSFPALMLSPVNFDALYAQEMQRMQEAGE 156 ARE + SLV RG+FPAL LSPVNFDAL+ +QR ++A + Sbjct: 121 ARELVSSLVNRGTFPALNLSPVNFDALFMDYLQRQEQAEQ 160
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 558 bits (1439), Expect = 0.0 Identities = 201/480 (41%), Positives = 297/480 (61%), Gaps = 16/480 (3%) Query: 1 MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMGRLARQQPDVIISDIRMPG 60 M+ + T+ + DDD +IR VL +AL + G + +A + +A D++++D+ MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 ASGLDLLAQIRDQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRAN 120 + DLL +I+ P LPV++M+A + +A+ + + GA++YLPKPFD+ E + ++ RA Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 121 QHAQEQQGLDVPQALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAH 180 + + + ++G + AMQE++R + RL +++T++I GESGTGKELVA Sbjct: 120 AEPKRRPS-KLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 181 ALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLD 240 ALH + R PF+A+NMAAIP+DL+ESELFGHEKGAFTGA GRFEQA+GGTLFLD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 241 EIGDMPADTQTRLLRVLADGEFYRVGGHVPVKVDVRIIAATHQNLESLVQAGKFREDLFH 300 EIGDMP D QTRLLRVL GE+ VGG P++ DVRI+AAT+++L+ + G FREDL++ Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 301 RLNVIRIHIPRLADRREDIPALARHFLGRAAQELAVEPKLLKPETEEFIRNLPWPGNVRQ 360 RLNV+ + +P L DR EDIP L RHF+ +A +E ++ K E E ++ PWPGNVR+ Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 361 LENTCRWITVMASSREVLIGDLPP----ELLNLPQDAAPVTNWEQALRQWADQALAR--- 413 LEN R +T + + + E+ + P + A + ++ Q ++ + + Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 414 ------GQSNLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMNV 467 S L D + E +I AL T G + AA LLG RNTL +KI+ELG++V Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSV 477
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.037 Identities = 10/32 (31%), Positives = 19/32 (59%) Query: 34 ALFLKGPSGSGKTTLLGLLGGVNVPAQGHIQL 65 ++ L+G G GK+TL+ L G++ + H + Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.1 bits (62), Expect = 0.033 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 11/71 (15%) Query: 14 GRIKQAEDPSQPRDAQAQARIEEHLREQPAAPYYMAQAILVQEAVLKRLDEQNKQLEAEL 73 +++A + + A+I+ E+ A EA L+ Q++ L A Sbjct: 263 AELEKALEGAMNFSTADSAKIKTLEAEKAA-----------LEAEKADLEHQSQVLNANR 311 Query: 74 KQARAQVEASR 84 + R ++ASR Sbjct: 312 QSLRRDLDASR 322
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.4 bits (92), Expect = 2e-05 Identities = 76/396 (19%), Positives = 125/396 (31%), Gaps = 45/396 (11%) Query: 29 PLFVIMFIVNYLDRVNIGFVRPHLESDL------GISAAAYGFGAGLFFIGYALFEVPSN 82 PL VI+ V LD V IG + P L L A YG L+ + Sbjct: 6 PLIVILSTV-ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 83 MLLQRVGARLWLTRIMFTWGLVATAMAFVQNETQFYVLRFLLGVAEAGFFPGVIYYFTRW 142 L R G R L + + MA Y+ R + G+ A Y Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADI 123 Query: 143 LPAAERGKAIAIFLSGSALASLISGPLAGALMQIQGLGMHGWQWMLFIEGMASVTLCFFV 202 ER + F+S +++GP+ G LM G H F A L F Sbjct: 124 TDGDERARHFG-FMSACFGFGMVAGPVLGGLM--GGFSPH----APFFAAAALNGLNFLT 176 Query: 203 FFWLDSKPHDAKWLSKAEQDALVDTIDREQREREATGTVKVSSWSLLKDRQIVLFCLIYF 262 +L + H K E+ L REA + W+ + ++F Sbjct: 177 GCFLLPESH------KGERRPL---------RREALNPLASFRWARGM-TVVAALMAVFF 220 Query: 263 CIQL-TIYAATFWLPSIIKRMGDLSDLQVGFFNSIPWLISILAMYAFAAGSSRWKFQQAW 321 +QL A W+ R +G + ++ LA + ++ Sbjct: 221 IMQLVGQVPAALWVIFGEDRFH-WDATTIGISLAAFGILHSLAQAMITGPVAARLGERRA 279 Query: 322 VAAALVIAAIGMFMS--TTGGPVFAFVAVCFAAIGFKSASSLFWPIPQGYLDARIAA--- 376 + ++ G + T G + + V A+ G P Q L ++ Sbjct: 280 LMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGI------GMPALQAMLSRQVDEERQ 333 Query: 377 -AVIALINSVGNLGGFVAPTTFGLLEQQTGSIQGGL 411 + + ++ +L V P F + + + G Sbjct: 334 GQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGW 369
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 40.2 bits (94), Expect = 1e-05 Identities = 70/387 (18%), Positives = 124/387 (32%), Gaps = 76/387 (19%) Query: 59 LGMIFSAFAWAYALGQVPGGWLLDRFGARRVYGLSLILWSLFTLLQGTVGWLG------- 111 G++ + +A G L DRFG R V +SL ++ + T +L Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRI 104 Query: 112 LAGVSAAVALFSMRFMLGLVESPAFPANSRIVSCWFPTRERGTASALFNSAQYMAVVVFA 171 +AG++ A + ++ + + R R G SA F +V Sbjct: 105 VAGITGATGAVAGAYIADIT-----DGDER-------ARHFGFMSACFGFG-----MVAG 147 Query: 172 PLMAWMTHTMSWEQVFIWMGVLGLLLSVVWFRLYHEPHSAPGLSREEFDYMREGGALVDL 231 P++ + S F L L + L E H Sbjct: 148 PVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGER------------------ 189 Query: 232 EKERKTAKSKPTRAELAQLFTSRNLWAVYLGQYCITALTYFFITWFPIYLIKGRGMTIM- 290 +P R E S +T + +F + L+ + Sbjct: 190 ---------RPLRREALNPLASFRW------ARGMTVVAALMAVFFIMQLVGQVPAALWV 234 Query: 291 -----EAGWVAALPAICGFTGGILG----GFVSDWLIRRGVHPSRARKTPFVIGMALSTT 341 W A I GIL ++ + R + ++GM T Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAAR-----LGERRALMLGMIADGT 289 Query: 342 --LVLANYVDGNAAVIALMTLAFFGKGLAAVGWAVLSDVAPKKMVGLCGGVFNGIGNIAG 399 ++LA G A ++ LA G G+ A+ A+LS ++ G G + ++ Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGIGMPALQ-AMLSRQVDEERQGQLQGSLAALTSLTS 348 Query: 400 IVTPLVIGYVVAST-GSFDNALWFVAA 425 IV PL+ + A++ +++ W A Sbjct: 349 IVGPLLFTAIYAASITTWNGWAWIAGA 375
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.2 bits (120), Expect = 3e-09 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 8/154 (5%) Query: 85 DCSAYQAQLNAAQAAVRASREELNHNRQLAALKSVGQFEVSLAEAKQAQAQAEAQVYQVQ 144 + Y++QL ++ + +++EE QL K+ ++ E + + Sbjct: 267 ELRVYKSQLEQIESEILSAKEEYQLVTQL--FKNEILDKLRQTTDNIGLLTLELAKNEER 324 Query: 145 VKRCVVTAPFDGRVVQRRAQPHESV-ANGAPLVEVV-DNRSLEIQLLVPSRWLARLKPGQ 202 + V+ AP +V Q + V L+ +V ++ +LE+ LV ++ + + GQ Sbjct: 325 QQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384 Query: 203 S----FQFTPDETGQPLGATVKRVGARIDEGSQT 232 + + P L VK + E + Sbjct: 385 NAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRL 418 Score = 29.0 bits (65), Expect = 0.018 Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 55 VLASELAGRIVEMPYADGEAFKKGSTLARFDCSAYQAQLNAAQAAVRASR-EELNHNRQL 113 + + E+ +GE+ +KG L + +A Q+++ +R E+ + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 114 AALKSVGQFEVSLAEAKQAQAQAEAQV 140 +++ E+ L + Q +E +V Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEV 184
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 55.6 bits (134), Expect = 2e-10 Identities = 18/145 (12%), Positives = 42/145 (28%), Gaps = 12/145 (8%) Query: 171 RWPRRRLLAVLAAALLLLLL----PVRQSVLAPAEVVPRGGW-VVAAPLDGVVAEFLVKP 225 R PR ++ ++ +L V A ++ G + + +V E +VK Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 226 NQRVTAGDLLVRFDAT-------ALKAQADVAARTLGVAEAELKVSAQRAFTDADSSARL 278 + V GD+L++ A ++ A + + + Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 279 DLLAARVEQKRAELDYAHQLLARSE 303 E+ + + + Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 39.0 bits (91), Expect = 3e-05 Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 4/130 (3%) Query: 245 AQADVAARTLGVAEAELKVSAQRAFTDADSSARLDLLAARVEQKRAELDYAHQLLARSEI 304 ++ + + A+ + + +L + EL + S I Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVI 330 Query: 305 RAERDGIAVFADAERWTGKPVQTGERLMQLADPVQAELRLE--LPVGDAIALQPGAEVAL 362 RA V G V T E LM + P L + + D + G + Sbjct: 331 RAPVSVK-VQQLKVHTEGGVVTTAETLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAII 388 Query: 363 FLDSDPLHRH 372 +++ P R+ Sbjct: 389 KVEAFPYTRY 398
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.4 bits (118), Expect = 3e-08 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 12/139 (8%) Query: 408 PRKALGLGLGLMLLLALLAVPWRG------AVEVPAMLEAS-RVSALHAPVAARVKQLQV 460 R+ + ++ ++A L S R + + VK++ V Sbjct: 54 SRRPRLVAY-FIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIV 112 Query: 461 HDGQTVAQGQLLLELESPDLDSRLKIVRREIETLQLLLRRQAGRSATASDAGVLEQQLAE 520 +G++V +G +LL+L + ++ + + +L + R S + L + Sbjct: 113 KEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARL----EQTRYQILSRSIELNKLPEL 168 Query: 521 AVAEYRGLAAQRERLQLRA 539 + + E LR Sbjct: 169 KLPDEPYFQNVSEEEVLRL 187 Score = 31.0 bits (70), Expect = 0.019 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 443 RVSALHAPVAARVKQLQVH-DGQTVAQGQLLLEL 475 + S + APV+ +V+QL+VH +G V + L+ + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVI 359
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.8 bits (77), Expect = 1e-04 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 63 ACFLIIETANERIGRASLQ--WADSHLQIIDMAILPAWQGQGIGSRLLRQWLAQA-DRQG 119 A FL N IGR ++ W + I D+A+ ++ +G+G+ LL + + A + Sbjct: 66 AAFLYYLE-NNCIGRIKIRSNWNG-YALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 120 LSAGLHVTS-HSPAVRLYRRSGF 141 L + A Y + F Sbjct: 124 CGLMLETQDINISACHFYAKHHF 146
>INTIMIN#Intimin signature. Length = 939 Score = 37.4 bits (86), Expect = 0.001 Identities = 51/283 (18%), Positives = 90/283 (31%), Gaps = 20/283 (7%) Query: 745 TRTAAVVVLAQNNAPVIGNLNGDSTTFTQGNGTILIDANGNATVSDSDSADFGGGNLTAS 804 T T +AQ N PV N+ S T + + +G ATV+ G + ++ Sbjct: 581 TATVKKNGVAQANVPVSFNIV--SGTAVLSANSANTNGSGKATVTLKSDKP--GQVVVSA 636 Query: 805 VSANGVAGEDT-LGILSVGNGAGQISLSGNTVSYGGVAIGTVAGGTGGASLVVTFNANAT 863 +A + + I A + + + VA G + V Sbjct: 637 KTAEMTSALNANAVIFVDQTKASITEIKADKTTA-------VANGQDAITYTVKVMKGDK 689 Query: 864 AASVQALVRSITYDNGNAGNGIGQASRSVSVTVSDGDGATSSTATVQVSVRETVPPTATI 923 S Q + + T + + VT++ T + V V + Sbjct: 690 PVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLT---STTPGKSLVSARVSDVAVDVKAP 746 Query: 924 SLSDTALKVGDTSNVTITFSEAVAGFSNADLTVMGGTLSAVSSSDGGLTWSATFTPSANT 983 + D N+ I + L G S +G TW + A+ Sbjct: 747 EVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQ-YGQVNLKASGGNGKYTWRSANPAIASV 805 Query: 984 TVASATITLNNAGVSDLAGNAGSGATVSPSYSIDTQRPTATIV 1026 +S +TL G + ++ + T +Y+I T P + IV Sbjct: 806 DASSGQVTLKEKGTTTISVISSDNQT--ATYTIAT--PNSLIV 844 Score = 37.0 bits (85), Expect = 0.002 Identities = 65/377 (17%), Positives = 119/377 (31%), Gaps = 28/377 (7%) Query: 1474 ASADGGITWTATFTPTSNVTDASNLITLDNSGVVGQSSGNAGSGTTDSNNYAIDTQRPTA 1533 A ADG T T T N +N+ N V G + +A S T+ + A T + Sbjct: 570 AKADGTEAITYTATVKKNGVAQANVPVSFNI-VSGTAVLSANSANTNGSGKATVTLKSDK 628 Query: 1534 TIVVADSQLAAGETSLVTITFSEAVVGFSNADLSVANGTLSALSSGDGGVTWTATLTPTV 1593 V S A TS + V + + +A+++G +T+T + Sbjct: 629 PGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGD 688 Query: 1594 GISDTSNLITLDNTGVM-----DTAGNAGTGSTDSNNYAIDSQRPTAVILMADTTL---T 1645 + T T + G + +A + + Sbjct: 689 KPVSNQEV-TFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPE 747 Query: 1646 VGETTTVTITFSEAVTGFTLADLSVPNGSLSG------LTSSDGGITWTATFTPSSNVQD 1699 V TT+TI T +P L + +G TW + ++V Sbjct: 748 VEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDA 807 Query: 1700 ASNVITLSNTGVADLAGNAGSGITSSGNYVVDTIVPTATIVVADTALRL----GETSLVT 1755 +S +TL G ++ + T++ Y + T +++V + + R+ + Sbjct: 808 SSGQVTLKEKGTTTISVISSDNQTAT--YTIAT---PNSLIVPNMSKRVTYNDAVNTCKN 862 Query: 1756 ITFSEAVSGFSNADLTVANGTLSAVSSSDGGITWTATFTPTGNITDASNLITLDNTGVVG 1815 S ++ A G + T + T + T D +V Sbjct: 863 FGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWVQQTAQDAKSGVASTYD---LVK 919 Query: 1816 QGGNAGVGTTDSNNYAI 1832 Q + ++SN YA Sbjct: 920 QNPLNNIKASESNAYAT 936 Score = 33.9 bits (77), Expect = 0.012 Identities = 68/389 (17%), Positives = 116/389 (29%), Gaps = 35/389 (8%) Query: 2071 FSNADLTVNNGTLSTVSSTDGGITWTATFTPTGNITDATNLISLDNTGVVGQGGNAGVGT 2130 + + T + DG T T T N N+ N +A Sbjct: 554 VVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSAN 613 Query: 2131 TDSNNYAIDTQRPTATIVVADSQLAAGETSLVTITFSEAVVGFSNADLSVANGTLSGLAS 2190 T+ + A T + V S A TS + V + + + +A+ Sbjct: 614 TNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVAN 673 Query: 2191 SDGGVTWTATLTPSAGISDTSNLITLDNTGVADLAGNAGSGSTDSNNYA---IDSQRPTA 2247 +T+T + + T T + + TD+N YA + S P Sbjct: 674 GQDAITYTVKVMKGDKPVSNQEV-TFTTTLGKL---SNSTEKTDTNGYAKVTLTSTTPGK 729 Query: 2248 TIVVADSNLTVGETSQVTITFSEAVTGLSNADLTVANGTLSAL--------------SSA 2293 ++V A + + + F +T V G L S Sbjct: 730 SLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGG 789 Query: 2294 DGGITWTATFTPAVGVRDTSNVITLANTGIADLAGNTGSGTTSSGNYAVDTIVPTATIVV 2353 +G TW + V +S +TL G T S +S A TI +++V Sbjct: 790 NGKYTWRSANPAIASVDASSGQVTLKEKG-----TTTISVISSDNQTATYTIATPNSLIV 844 Query: 2354 ADNALRA----GESSLVTITFSEAVSGFTLADMSAANGVLTNLSSLDGGITWTATLTPT- 2408 + + R ++ S L ++ A G T + + T Sbjct: 845 PNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWVQQTA 904 Query: 2409 ----SNVEDTSNLVSLDNSGVVATASGNA 2433 S V T +LV + + + NA Sbjct: 905 QDAKSGVASTYDLVKQNPLNNIKASESNA 933 Score = 32.3 bits (73), Expect = 0.034 Identities = 59/407 (14%), Positives = 111/407 (27%), Gaps = 36/407 (8%) Query: 639 VAIVPNISLTQTDGDTQVSGASLALSGVVDGANETLSLTAAQIATAAGFGITVSGSGSAV 698 + ++ N + G T + A + AT G+ + + Sbjct: 546 ITVLSNGQVVDQVGVTD-------FTADKTSAKADGTEAITYTATVKKNGVAQANVPVSF 598 Query: 699 LTLSGVATLAQYRAILASVAYGNAAAAYTTGTRSVTVSVNDDMGST-TRTAAVVVLAQNN 757 +SG A L+ A + G A + V T A V+ Sbjct: 599 NIVSGTAVLSANSA--NTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQT 656 Query: 758 APVIGNLNGDSTTFTQGNGTIL-----IDANGNATVSDSDSADFGGGNLTASVSANGVAG 812 I + D TT + + + + G L+ S G Sbjct: 657 KASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNG 716 Query: 813 EDTLGILSVGNGAGQIS--LSGNTVSYGGVAIGTVAGGTGGASLVVTFNANATAASVQAL 870 + + S G +S +S V + T + Sbjct: 717 YAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVW 776 Query: 871 VRSITYD---NGNAGNGIGQASRSVSVTVSDGDG----ATSSTATVQVSVRETVPPTATI 923 ++ + +G G +++ +V G T T+ V + T TI Sbjct: 777 LQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTATYTI 836 Query: 924 SLSDTALKVGDTSNVTITFSEAVAGFSNADLTVMGGTLSAVSSSDGGLTWSATFTPSANT 983 + ++ + + VT + L L V W A Sbjct: 837 ATPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENVFK-----AWGAANKYEYYK 891 Query: 984 TVASATITLNNAGVSDLAGNAGSGATVSPSYSIDTQRPTATIVVADN 1030 + + + V A +A SG V+ +Y + Q P I +++ Sbjct: 892 SSQTII-----SWVQQTAQDAKSG--VASTYDLVKQNPLNNIKASES 931
>PF06872#EspG protein Length = 398 Score = 28.9 bits (64), Expect = 0.038 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 52 ETDKAELFIPDYQRELVWSE-EQQGRFIESILLNLPIPYLYV 92 E +AE+ P+ ++ LV E +Q R ++S+ +N +PY+ V Sbjct: 113 ELIEAEIHTPNNEKFLVLLEANEQNRLLQSLPINRHMPYIQV 154
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 38.0 bits (88), Expect = 2e-05 Identities = 63/282 (22%), Positives = 104/282 (36%), Gaps = 30/282 (10%) Query: 3 RRPAALLALCAALVASTQALAAEL-PQRWVSAGGALSEWVSALGGEPRLVGVDTTSQH-- 59 RR +AL L A AA + P R V+ E + ALG P GV T + Sbjct: 10 RRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVP--YGVADTINYRL 67 Query: 60 ----PESLKGLPSIGYQRQLSAEGILSLRPDVLVGTEEMGPPP-VLAQIRKAGVRVELLS 114 P + +G + + + E + ++P +V + GP P +LA+I + Sbjct: 68 WVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARI----APGRGFN 123 Query: 115 S---KADLAAVDANLKQLGMLLGAEQKAAQLAADYHQQLEVLQVQVKEAQASHKVPGVLL 171 K LA +L ++ LL + A A Y + ++ + + A + L+ Sbjct: 124 FSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLI 183 Query: 172 LVGHAGAKPLIAGQGTAGDWVLRQAGGRNLAEHQ----GYKNFSNEALAAL-DPDVVVFS 226 H L+ G + +L + G N + + G S + LAA D DV+ F Sbjct: 184 DPRHM----LVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFD 239 Query: 227 DRALVGEQALQALLKENPALATSRAVRDKRLVPLDPTLLVGG 268 + + AL+ P VR R + G Sbjct: 240 H---DNSKDMDALMA-TPLWQAMPFVRAGRFQRVPAVWFYGA 277
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 0.001 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 12 KRPTGRSRAWLGWALKLSLVGLVIIAGFAVYLDAVV----QEKFSGKRWTIPAKVYARPL 67 + P R + + + LV I++ ++ V + SG+ I + Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLG-QVEIVATANGKLTHSGRSKEIKPIENSIVK 108 Query: 68 ELFV--GQKLSKNDFLTELDALGYRRESAA 95 E+ V G+ + K D L +L ALG ++ Sbjct: 109 EIIVKEGESVRKGDVLLKLTALGAEADTLK 138
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 36.7 bits (85), Expect = 1e-05 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 76 FGAGDVKLLAALGLATSQDYVLGTFIGAGGTLLVWALLRRWARRRAGQEAEKQPFAPFVL 135 G GD KLLAALG + + + + R + PF P++ Sbjct: 211 MGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKP--IPFGPYLA 268 Query: 136 VGFLLT 141 + + Sbjct: 269 IAGWIA 274
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.9 bits (80), Expect = 1e-04 Identities = 14/67 (20%), Positives = 21/67 (31%) Query: 107 HGLGQLASARGDDVQALQNLQRAVRLAPTDERVRNDLGVVLMSMGRYEQARFEFLTAIEL 166 + L G A + Q L D R LG +MG+Y+ A + + Sbjct: 40 YSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIM 99 Query: 167 KDDNPLP 173 P Sbjct: 100 DIKEPRF 106
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 128 bits (324), Expect = 2e-34 Identities = 67/325 (20%), Positives = 127/325 (39%), Gaps = 27/325 (8%) Query: 61 AITRAAVGDPKVADVQPSGDRAVLVTAVGQGNTTLMLWTACAPGPHRAMLFVKGQASAAM 120 I+ + + A + D+ +++ A GQ N L V Sbjct: 288 GISSTMQSEKQAAKPVAALDKNIIIKAHGQTNA----------------LIVTAAPDVMN 331 Query: 121 AETGLPPSLDPELPSQVQADIRFVEVRRTKYKEAGARLFFSGS-----NNSLIGSPGTVP 175 + LD QV + EV+ G + + NS + + Sbjct: 332 DLERVIAQLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIA 390 Query: 176 GTSVTPGAVPVTSPQIPLNNGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSG 235 G + V+S + I G + + AL +S LA PS+ L Sbjct: 391 GANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDN 450 Query: 236 LTASFLAGGEIPIPVPS--AGSDNF--SIEYKEFGVRLALTPTVISRDRITLKVAPEVSE 291 + A+F G E+P+ S DN ++E K G++L + P + D + L++ EVS Sbjct: 451 MEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSS 510 Query: 292 LDYTNAVTIGGTSVPGLSIRRTDTSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPIL 351 + + T + R + ++ + GE+ ++ GL+ + DK+P LG++P++ Sbjct: 511 VADAASSTSSDLGAT-FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVI 569 Query: 352 GAFFRQSALVREETELLMIVTPHLV 376 GA FR ++ + L++ + P ++ Sbjct: 570 GALFRSTSKKVSKRNLMLFIRPTVI 594
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 25.3 bits (55), Expect = 0.016 Identities = 11/39 (28%), Positives = 21/39 (53%) Query: 20 ASGIEYAVIAAMVAVILAGFVPGISGNISTMFTAIQTAL 58 +SGI A ++V ++ V ++G IS + A + A+ Sbjct: 379 SSGISAAATTSLVGAPVSALVGAVTGIISGILEASKQAM 417
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.6 bits (230), Expect = 4e-25 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 6 SRQQILLVDDEEEHLLELAELLENEGYYCHTAGSVKAALQLLTRYPDVALVITDLRMPEE 65 + IL+ DD+ L + L GY + + + LV+TD+ MP+E Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDE 60 Query: 66 SGIGLIQRLRDHTARQHLPVIVMSGHAGAEDLSDLLRLQVLDFFRKPIYYARLLETLDNL 125 + L+ R++ R LPV+VMS D+ KP L+ + Sbjct: 61 NAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 126 FPQPLLQVAK 135 +P + +K Sbjct: 119 LAEPKRRPSK 128
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 28.3 bits (63), Expect = 0.026 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 16/94 (17%) Query: 104 KHNRQHIIAALDASLERLQTDRIDLYQLHWPERSTNFFGKLGYQHLPHDLFTPLEETLEV 163 K N+ + +L+ L L++ HW + +FF L EE + Sbjct: 7 KTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFF----------TLHEKFEELYDH 56 Query: 164 LDEQVR--AGKIRHIGLSNETPWGTMK-FLQLAE 194 E V A ++ IG P T+K + + A Sbjct: 57 AAETVDTIAERLLAIGGQ---PVATVKEYTEHAS 87
>adhesinb#Adhesin B signature. Length = 310 Score = 25.6 bits (56), Expect = 0.015 Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 1 MKKLLLPALLIGAFATLAGCST 22 MKK LL+ AF LA CS+ Sbjct: 1 MKKCRFLVLLLLAFVGLAACSS 22
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 96.3 bits (239), Expect = 4e-25 Identities = 64/249 (25%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 38 FECRLIQPIDGFGSGEFVRRAGEQPV--FQLRSGSNVLGAGSATLLAAAAPWQPGRGDIN 95 EC+L+ PI FG F RA ++ F+L+ + + +L++ PW+PG Sbjct: 44 LECQLVHPIPSFGDAVFSSRASKKINLDFELKMRRPMGETRNVSLISMPPPWRPGEHADR 103 Query: 96 LGAVRLARNGVLFSSSQSQASRLINGLLDGRSTVVRSYTGEAGRP--IEVRVLPVSFAKA 153 + ++ + + Q+ A +++ L GR SY R IEV + V F Sbjct: 104 ITNLKFFKQFDGYVGGQT-AWGILSELEKGRYPTF-SYQDWQSRDQRIEVALSSVLFQSK 161 Query: 154 WSDYQACAGKMLAMNYDQVRQTQVGFPGGGIDLDAAARARLDVILDYLQADPTVNHIELN 213 ++ + C +L +++ + T + + G L A++ RL I DY++ + ++ + + Sbjct: 162 YNAFSDCIANLLKYSFEDIAFTILHYERQGDQLTKASKKRLAQIADYVRHNQDIDLVLVA 221 Query: 214 GHSDNSGNRLTNRDTSRRRALAVADYLKAHGVPEEQITVRFHGERYPLAKNNSAANRARN 273 ++D++ + ++ S RRA ++ Y ++ G+PE++I V+ +G+R P+A N + + +N Sbjct: 222 TYTDSTDGKSESQSLSERRAESLRTYFESLGLPEDRIQVQGYGKRRPIADNGTPIGKDKN 281 Query: 274 RRVNIELDR 282 RRV I L R Sbjct: 282 RRVVISLGR 290
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 1e-19 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 8/161 (4%) Query: 3 KVLIVDDHPVIRLAVRMLMERHGYDVVAETDNGVAALQLTREYLPDIVVLDIGIPKLDGL 62 +L+ DD IR + + R GYDV T N + D+VV D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EVIARMASASPGSRVLVLTSQAPGHFSMRCMQAGASGYVCKQQELTELLSAIKAVLSGYS 122 +++ R+ A P VLV+++Q +++ + GA Y+ K +LTEL+ I L+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 ---YFPNQALHKSRGRVGGASET----EMVDRLSAREMMVL 156 VG ++ ++ RL ++ ++ Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLM 164
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 29.2 bits (65), Expect = 0.012 Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 59 EGLLVLSRSDGQAVDAESEQEVDKVVLKATLYGRATEGDGFKPRWQIEQETTCPGLD 115 + + +DG+ E+ E+ K G+ G+G K WQ+EQ + G + Sbjct: 32 QTYRSVEHTDGKVSKVETGSEIADFGSKIGFKGQEDLGNGLKAVWQLEQGASVAGTN 88
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 56.4 bits (136), Expect = 3e-11 Identities = 34/224 (15%), Positives = 77/224 (34%), Gaps = 39/224 (17%) Query: 74 IDRERFQAAFDQATAVAETRTQQLHLREREAARRTALGPGAISAELRENAQINAAIARGE 133 +++E V +++ +Q+ A L ++ + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL----VTQLFKNEILDKLRQTTDN 310 Query: 134 LHEAQAQLQVAKINLARSEVRAPRSGHITNLRL-AQGNYVNAGQSVMALV-DDSTFFIQA 191 + +L + S +RAP S + L++ +G V +++M +V +D T + A Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 192 YFEETKLPRIRVGDSVKVWLMGAGEA--------MQGHVESISRG-ITDSNSNPDSQLLP 242 + + I VG + + + EA + G V++I+ I D Sbjct: 371 LVQNKDIGFINVGQNAIIKV----EAFPYTRYGYLVGKVKNINLDAIEDQRLGL------ 420 Query: 243 EVEPTFNWVRLAQRIPVRIRLDDIPE---GMNLSAGMTASVQVH 283 + + I + + + LS+GM + ++ Sbjct: 421 -----------VFNVIISIEENCLSTGNKNIPLSSGMAVTAEIK 453 Score = 52.1 bits (125), Expect = 8e-10 Identities = 33/205 (16%), Positives = 64/205 (31%), Gaps = 38/205 (18%) Query: 1 MRAVVRTLVTLCVVAIAVLAGYKLWQYYMLTPWTRDARVRADVVV------IAPDVSGWV 54 V R + + L + L A + I P + V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSV--LGQVEIVATANGKLTHSGRSKEIKPIENSIV 107 Query: 55 RELKVQDNQRVKAGDLLMSIDRERFQAAFDQATA------VAETRTQQL----------- 97 +E+ V++ + V+ GD+L+ + +A + + + +TR Q L Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPE 167 Query: 98 ----------HLREREAARRTALGPGAISAELRENAQINAAIARGELHEAQAQLQVAKIN 147 ++ E E R T+L S + Q + + A+ +A+IN Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK---KRAERLTVLARIN 224 Query: 148 LARSEVRAPRSGHITNLRLAQGNYV 172 + R +S L + Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAI 249
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.6 bits (193), Expect = 2e-19 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 7/189 (3%) Query: 3 KRIMITGAGSGLGREIALRWAREGWRLALADVNEPGLRETLERVRSAGGEGFIQ---RCD 59 K ITGA G+G +A A +G +A D N L + V S E D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL---EKVVSSLKAEARHAEAFPAD 65 Query: 60 VRDYSQLTALAQACEEKFGGIDVIVNNAGVASGGFFAELSLEDWDWQIAVNLMGVVKGCK 119 VRD + + + E + G ID++VN AGV G LS E+W+ +VN GV + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 120 AFLP-LLERSKGRIINVASMAALMQGPGMSNYNVAKAGVLALSESLLVELRQLEVAVHVV 178 + +++R G I+ V S A + M+ Y +KA + ++ L +EL + + ++V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 179 CPSFFQTNL 187 P +T++ Sbjct: 186 SPGSTETDM 194
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 0.004 Identities = 14/53 (26%), Positives = 18/53 (33%) Query: 194 LAVDPHCTRPGVGEVLVRHLVEHFMSRGLAYLDLSVLHDNRQAKRLYEKLGFR 246 +AV + GVG L+ +E L L N A Y K F Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 27.9 bits (62), Expect = 0.047 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 42 FDALHSADEAVRKPAHA-IRRAWEMNVSLMASDIPLRFRAATLDTYRAETE------GQA 94 + +A +A K A+ + + +++ + L +++ G++ Sbjct: 84 QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRS 143 Query: 95 VALTECRDYVHGFERNWELGRSMMLLGDVGTGKTHLGCAIAQQVIRSYGA 144 A+ E + + ++M+ G+ GTGK + A+ R G Sbjct: 144 AAMQEIYRVLARLMQ---TDLTLMITGESGTGKELVARALHDYGKRRNGP 190
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.7 bits (222), Expect = 1e-23 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 5/203 (2%) Query: 11 LKGRVIMVTGAGRGIGAAAAKAYAALGATVLLLGKTEANLNEVYDEIEAAGHPQPVVIPF 70 ++G++ +TGA +GIG A A+ A+ GA + + L +V ++A F Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE---AF 62 Query: 71 NLETALPHQYDELAAMVEEQFGRLDGLLNNASIIGPRTPLEQLSGDNFMRVMHINVDATF 130 + DE+ A +E + G +D L+N A ++ P + LS + + +N F Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVF 121 Query: 131 MLTSTLLPLLKLSEDASVVFTSSSVGRKGRAYWGAYGVSKFATEGLMQTLADELEGVAPV 190 + ++ + S+V S+ R AY SK A + L EL + Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN-I 180 Query: 191 RSNSINPGATRTAMRAQAYPSEN 213 R N ++PG+T T M+ + EN Sbjct: 181 RCNIVSPGSTETDMQWSLWADEN 203
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 117 bits (296), Expect = 2e-38 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 2 TKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVG 61 K +LI + V L+ KD A+ + +S LA G+++++ GFG+F + RA R G Sbjct: 3 NKQDLIAK-VAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61 Query: 62 RNPKTGQSVELEGKFVPHFKPGKELRDRV 90 RNP+TG+ ++++ VP FK GK L+D V Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAV 90
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 30.5 bits (69), Expect = 0.017 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 11/43 (25%) Query: 1 MKVLVISNFFPPHVIGGAEIIAHHQARALAARGHEVRVLAGDN 43 MK LV G A I H ++ L GH+V + DN Sbjct: 1 MKYLVT---------GAAGFIGFHVSKRLLEAGHQVVGI--DN 32
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 211 bits (539), Expect = 9e-69 Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 33/327 (10%) Query: 11 ILITGGAGFIGSHLTDELLAKGYAVRVLDNLSTGKRSNL------PLSHPNLQLIEGDVA 64 L+TG AGFIG H++ LL G+ V +DNL+ +L L+ P Q + D+A Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 65 DAALVAH--AVKGCAGVVHLAAVASVQASVDDPVRTHQSNFIGTLNVCEAMRLCGVKRVV 122 D + A V +V+ S+++P SN G LN+ E R ++ ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 123 FASSAAVYGNNGEGASIDEDTPKAPLTPYASDKLASEYYMDFYRREHGLLPVVFRFFNIY 182 +ASS++VYG N + +D+ P++ YA+ K A+E Y +GL RFF +Y Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVY 182 Query: 183 GPRQDPSSPYSGVISIFAERAQKGLPITVFGDGEQTRDFFFVSDLVKLLVQGLESGPVAE 242 GP P F + +G I V+ G+ RDF ++ D+ + +++ + P A+ Sbjct: 183 GPWGRPDMAL----FKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 243 GA-----------------INVGLNQATSLNQILAALAQVLGKLPEVSYQPARAGDIRHS 285 N+G + L + AL LG + + P + GD+ + Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLET 298 Query: 286 RANNQRL--LSGFEMPRATAIEVGLAQ 310 A+ + L + GF P T ++ G+ Sbjct: 299 SADTKALYEVIGFT-PE-TTVKDGVKN 323
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.011 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 19/52 (36%) Query: 65 LPPHAQGKLVRVVQ-GEVFDVA------VDIRRSSPTFGQWVGAVLSAENKN 109 +P AQ +L+RV+Q GE V D+R +++A NK+ Sbjct: 243 MPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR------------IVAATNKD 282
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 57.5 bits (139), Expect = 1e-11 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 20/162 (12%) Query: 1 MKILLLGKNGQVGWELQRALSVLG-EVVALD-----------RHR----ASTPYGELAGD 44 MK L+ G G +G+ + + L G +VV +D + R A + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 45 LSDLEGLRATIRSVAPQVIVNAAAYTAVDKA-ESERELAHTVNALASQVMAEEAKRLD-A 102 L+D EG+ S + + + AV + E+ A N + E + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYAD-SNLTGFLNILEGCRHNKIQ 119 Query: 103 WLVHYSTDYVFDGSGSAPWKETDPVA-PVNYYGATKLEGEQL 143 L++ S+ V+ + P+ D V PV+ Y ATK E + Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELM 161
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 182 bits (463), Expect = 8e-57 Identities = 88/356 (24%), Positives = 148/356 (41%), Gaps = 50/356 (14%) Query: 1 MKILVTGGAGFIGSAVVRHIISNTDDSVINVDKLT--YAGNL-ESLQSVDQDTRYAFERV 57 MK LVTG AGFIG V + ++ V+ +D L Y +L ++ + + F ++ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59 Query: 58 DICDRGELDRVFREHQPDAVMHLAAESHVDRSISGPSEFIQTNIIGTYNLLEAARGYWNS 117 D+ DR + +F + V V S+ P + +N+ G N+LE R Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR----- 114 Query: 118 LDETRKAAFRFHHI---STDEVYGDLEGPEDLFTETTPY-QPSSPYSASKASSDHLVRAW 173 + H+ S+ VYG + F+ P S Y+A+K +++ + + Sbjct: 115 -------HNKIQHLLYASSSSVYGL--NRKMPFSTDDSVDHPVSLYAATKKANELMAHTY 165 Query: 174 ARTYGLPTLVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHAR 233 + YGLP YGP+ P+ + LEGK + +Y G RD+ Y++D A Sbjct: 166 SHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAE 225 Query: 234 ALYKVV------------------TEGEVGQTYNIGGHNEKQNIEVVRTVCALLDELRPE 275 A+ ++ + YNIG +E++ + AL D L E Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNS---SPVELMDYIQALEDALGIE 282 Query: 276 SAFRPHVDLLTYVQDRPGHDLRYAIDASKIQRELGWVPEETFESGIRKTVQWYLDN 331 A + + L +PG L + D + +G+ PE T + G++ V WY D Sbjct: 283 -AKKNMLPL------QPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 53.4 bits (128), Expect = 2e-09 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 18/122 (14%) Query: 138 GNGNDVITVNGDQNTFIDGGDGNDTIVTGNGNNTVIAGAGN------------NNVKTGS 185 GND ++ G+ + + GGDGND ++ GNN + G G+ N + G Sbjct: 761 DKGNDTLS-GGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGK 819 Query: 186 GNDTVVLSGEEHTDIVDTGAGYDVVQLDGSRDDYAFATNANFNVTLT---GNQTASISNA 242 GND L G E D++D G G D+++ D Y + + ++ S+++ Sbjct: 820 GNDK--LYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADI 877 Query: 243 EF 244 +F Sbjct: 878 DF 879 Score = 50.3 bits (120), Expect = 1e-08 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 139 NGNDVITVNGDQNTFIDGGDGNDTIVTGNGNNTVIAGAGNNNVKTGSGNDTV-VLSGEEH 197 +GND + N + GG+G+D + G+GN+ +I AGNN + G G+D V Sbjct: 753 DGNDRLY-GDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLA 811 Query: 198 TDIVDTGAGYDVVQLDGSRD 217 +++ G G D + D Sbjct: 812 KNVLFGGKGNDKLYGSEGAD 831 Score = 49.2 bits (117), Expect = 3e-08 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 148 GDQNTFIDGGDGNDTIVTGNGNNTVIAGAGNNNVKTGSGNDTVVLSGEEHTDIVDTGAGY 207 D + I+G DGND + GN+T+ G G++ + G GND L G + ++ G G Sbjct: 743 ADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK--LIGVAGNNYLNGGDGD 800 Query: 208 DVVQLDGSRDDYAFATNANFNVTLTGNQ 235 D Q+ G+ N L G++ Sbjct: 801 DEFQVQGNSLAKNVLFGGKGNDKLYGSE 828 Score = 33.4 bits (76), Expect = 0.002 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Query: 114 FAALAADVAVAADANAEIGLVVTTGNGNDVITVNGDQNTFIDGGDGNDTIVTGNGNNTVI 173 ++ L +V + EI + G+G+D + + + I G G+D + + + Sbjct: 593 YSNLIQHASVGNNQYREIRIESHLGDGDDKVFL-SAGSANIYAGKGHDVVYYDKTDTGYL 651 Query: 174 AGAGNNNVKTGSGNDTVVLSG 194 G + G+ T VL G Sbjct: 652 TIDGTKATEAGNYTVTRVLGG 672 Score = 30.3 bits (68), Expect = 0.019 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 20/118 (16%) Query: 134 VVTTGNGNDVITVNGDQNTFIDGGDGNDTIVTGNGNNTVIAGAGNNNVKTGSGNDTVVLS 193 V+ G GND + + + +DGG+G+D + G GN+ + G G+ Sbjct: 814 VLFGGKGNDKLYGSEGAD-LLDGGEGDDLLKGGYGNDIYRYLS-------GYGHHI---- 861 Query: 194 GEEHTDIVDTGAGYDVVQL-DGSRDDYAFATNANFNVTLTG-NQTASISNAEFLTFVN 249 I D G D + L D D AF N + G SI + +TF N Sbjct: 862 ------IDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRN 913
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.5 bits (68), Expect = 0.024 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 11/122 (9%) Query: 492 EPNSNLDDVGERALGVALQKLKETGATVFIVSHRPNILTRLDRVLVMAGGTISMYGERD- 550 E N N + R L ++ L ++ R++ L A +I Sbjct: 164 EGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQIRMNT-LTAAKASIEAAAANKA 222 Query: 551 --------RVIAELAAQQAKGQQRVAQPAAPQPPAV-APTAPRPAPPAAPAAAPVTTTST 601 + AE A+Q + A P +V A A R A AA + + Sbjct: 223 REQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAIS 282 Query: 602 GA 603 A Sbjct: 283 DA 284
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 324 bits (831), Expect = e-109 Identities = 98/422 (23%), Positives = 181/422 (42%), Gaps = 7/422 (1%) Query: 24 RRIGLTIVFVTFGIFGTWAAVAPLSNAVHGSGVVTVQNYRKTVQHLEGGIVKELLARDGD 83 R + I+ I + + + +G +T K ++ +E IVKE++ ++G+ Sbjct: 58 RLVAYFIMGF-LVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGE 116 Query: 84 MVKQGDPLIVLDEAQLSSEYESTRNQLIVARYKEARLRA-----ERDGLQAIPPVTMDGT 138 V++GD L+ L ++ T++ L+ AR ++ R + E + L + Sbjct: 117 SVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYF 176 Query: 139 DSDRAMEALAGEQQVFKARHDALQGEISVNRERIEQMKQQIAGLNDMIRTKRNLEKSYTG 198 + E L + K + Q + +++ + + + I NL + Sbjct: 177 QNVSEEEVLR-LTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKS 235 Query: 199 EIKQLKELLAEGFVDNQRLLEQERKLDLLKTEVADHESTITKTKLQIGETELQIVQLKKK 258 + LL + + +LEQE K E+ ++S + + + +I + + + + Sbjct: 236 RLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL 295 Query: 259 FDSDVANELSEVQAQVFDLQEKEAALRDRLSRVVIRAPESGMVLDMKVHTIGGVVSAATP 318 F +++ ++L + + L + A +R VIRAP S V +KVHT GGVV+ A Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 319 LLDIVPASSELVVEAKVATKDIDRLELGKTADIRFSAFNQATTPVIEGTLIRISADSLTE 378 L+ IVP L V A V KDI + +G+ A I+ AF + G + I+ D++ + Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 379 ERTGDPYYLVRVKVTEDGMEKLGNRKLQPGMPADVLINAGDRTMLQYLLKPARNMFAESL 438 +R G + ++ N L GM I G R+++ YLL P ESL Sbjct: 416 QRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESL 475 Query: 439 IE 440 E Sbjct: 476 RE 477
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 112 bits (283), Expect = 9e-31 Identities = 72/354 (20%), Positives = 122/354 (34%), Gaps = 65/354 (18%) Query: 1 MKAIVTGITGQDGAYLAELLLEKGYTVYG-----TYRRTSSVNFWRIEELGIHTNPNLHL 55 MK +VTG G G ++++ LLE G+ V G Y S + R+E L P Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVS-LKQARLELLA---QPGFQF 56 Query: 56 VEYDLTDLSASIRLLQTTEATEVYNLAAQSFVGVSFEQPLTTAEITGLGAVNLLEAIRIV 115 + DL D L + V+ + V S E P A+ G +N+LE R Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 116 NPKVRFYQASTSEMFGKVQEIPQVETTPF-YPRSPYGVAKLYAHWMTINYRESYNIFATS 174 + AS+S ++G +++P +P S Y K M Y Y + AT Sbjct: 117 KIQ-HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 175 GILFNHESPLRGRE-----FVTRKITDSVAKIKLGLLDKLELGNLDAKRDWGFAKEYVEG 229 F P GR T+ + + + I + KRD+ + + E Sbjct: 176 LRFFTVYGP-WGRPDMALFKFTKAMLEGKS-IDV-------YNYGKMKRDFTYIDDIAEA 226 Query: 230 MWRMLQAEVPDT-------------------FVLATNRTETVRDFVTMAFKAAGIEINWS 270 + R+ + + + + D++ A GIE Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAK-- 284 Query: 271 GKDEAEQGTCAASGKVLVVINPKFYRPAEVELLIGNPAKAKEVLGWEPKTSLEE 324 N +P +V + EV+G+ P+T++++ Sbjct: 285 -------------------KNMLPLQPGDVLETSADTKALYEVIGFTPETTVKD 319
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 99.5 bits (248), Expect = 3e-26 Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 27/238 (11%) Query: 7 RALITGIQGFTGRYMAAELRASGYEVVGTGS--------------QVLDAPDY--HQVDL 50 + L+TG GF G +++ L +G++VVG + ++L P + H++DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 51 TDGPGLRALLAEVQPDVIVHLAAIAFVGHGAAD--AFYQVNLVGTRNLLEAIAACGKAPD 108 D G+ L A + + V + + A+ NL G N+LE Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--IQ 119 Query: 109 CVLIASSANVYG-NVSEGMLGEQTPPAPANDYAVSKLAMEYMARLW---FDRLPIVITRP 164 +L ASS++VYG N + + P + YA +K A E MA + + LP R Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG-LPATGLRF 178 Query: 165 FNYTGVGQAENFLLPKIVSHFSRKAGTIEL-GNLDVWRDFSDVRAVVQAYRGLIEARP 221 F G + L K + +I++ + RDF+ + + +A L + P Sbjct: 179 FTVYGPWGRPDMALFKFTKAM-LEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 89.1 bits (221), Expect = 2e-22 Identities = 65/355 (18%), Positives = 124/355 (34%), Gaps = 61/355 (17%) Query: 5 TILVTGASGFVGSALCRRLAS-----IGV------YAPRAALRHAGTGPADIPAVTV--G 51 LVTGA+GF+G + +RL +G+ Y L+ A P Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVS--LKQARLELLAQPGFQFHKI 59 Query: 52 DLAATTDWREALA--GVDAVVHAAARVHVMKETAADSLAAFRRVNVEGTLNLARQAAAAG 109 DLA + A + V + R+ V + ++ A+ N+ G LN+ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAV--RYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 110 VRRFVFISSVKVNGEASIAGRPLRADD-AAMPLDAYGISKHEAEQALCQLAVATGMEVVI 168 ++ ++ SS V G P DD P+ Y +K E + G+ Sbjct: 118 IQHLLYASSSSVYGLN--RKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 169 IRPVLVYGPGVKAN--FHSMMRWVQRGVPLPL-GAVDNRRSLVSVQNLVDLVVTCIDHPQ 225 +R VYGP + + + + G + + +R + ++ + ++ D Sbjct: 176 LRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIP 235 Query: 226 ARNQTFMASDGED-----------------VSLSELLRALGRALGRPAR--LLPVPPALL 266 + + G V L + ++AL ALG A+ +LP+ P + Sbjct: 236 HADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDV 295 Query: 267 QRAANLLGRHDLAQRLLGSLQVDIAKNQQLLGWRPPFTLQQGLDATARSFLETHR 321 A D +++G+ P T++ G+ + + ++ Sbjct: 296 --------LETSA---------DTKALYEVIGFTPETTVKDGVKNFVNWYRDFYK 333
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 2e-36 Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 8/252 (3%) Query: 7 GQVALVTGGAAGIGRATALAFAREGLKVVVADLDPVGGEGTVALIKDAGGQALFVACDVT 66 G++A +TG A GIG A A A +G + D +P E V+ +K A DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 67 RDADVRRLHEQVIQAYGRLDYAYNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKY 126 A + + ++ + G +D N AG+ + G + S+ E++A VN GV+ + Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 127 QLPLLLAQGGGAIVNTASVAGLGAAPKMSIYSASKHAVIGLTKSAAIEYAKKRIRVNAVC 186 ++ + G+IV S M+ Y++SK A + TK +E A+ IR N V Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 187 PAVIDTDMFRR----AYEADPRKAEFAAAMH---PVGRIGKVEEIASAVLYLCSDGAAFT 239 P +TDM A+ P+ ++ K +IA AVL+L S A Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 240 TGHSLTVDGGAT 251 T H+L VDGGAT Sbjct: 247 TMHNLCVDGGAT 258
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 59.3 bits (143), Expect = 8e-13 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 22/194 (11%) Query: 11 TGRDYPPAKL------SQASLIVIDAQKEYLSG-PLALSGMDEAVANIARLLDAARKAGR 63 T D P K+ ++A L++ D Q ++ S + E ANI +L + + G Sbjct: 13 TASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGI 72 Query: 64 PIIHVRHLGTV-----GGRFDPQGPA-------GEFIPGLEPRDGEIIIEKRMPNAFKNT 111 P+++ G+ D GP + I L P D ++++ K +AFK T Sbjct: 73 PVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRT 132 Query: 112 KLHETLQELGHLDLIVCGFMSHSSVSTTVRRAKDYGYRCTLVQDASATRDLALKDRVIPA 171 L E +++ G LI+ G +H T A + V DA A D +L+ + Sbjct: 133 NLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVA--DFSLEKHQMAL 190 Query: 172 AQI-HECEMAVMAD 184 C VM D Sbjct: 191 EYAAGRCAFTVMTD 204
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 3e-04 Identities = 65/337 (19%), Positives = 116/337 (34%), Gaps = 29/337 (8%) Query: 25 PFLALYFDHLGFPPARIGELVAIPMLMRCIAPNLWGWLGDRSGQRLLIVRLGALCTLATF 84 P L H A G L+A+ LM+ + G L DR G+R +++ Sbjct: 29 PGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLL----------V 78 Query: 85 SLIFFGKSYAWLALVMALHAFFWHAVLPQFE----VITLAHLHGQTARYSQVRLWG---- 136 SL YA +A L + ++ + A++ T + R +G Sbjct: 79 SLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSA 138 Query: 137 --SIGFILTVVGLGRLFEW-LSLDIYPVALVTIMAGIVAASLWVPNAQPVEQGERRDAGG 193 G + V G + + + A + + + L + + + RR+A Sbjct: 139 CFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALN 198 Query: 194 FLRQLRAP----GVVGFYLCVALMQLSHGPYYTFLTLHLEH-LGYSRGAIGL-LWALGVV 247 L R V +MQL + E + IG+ L A G++ Sbjct: 199 PLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGIL 258 Query: 248 AEVLIFMVMSRIFTRFSVQQVLLASFLLAALRWLLLGNLAGEPGVLIFAQVLHAATFGCF 307 + M+ + R ++ L+ + ++LL G + F ++ A+ G Sbjct: 259 HSLAQAMITGPVAARLGERRALMLGMIADGTGYILL--AFATRGWMAFPIMVLLASGGIG 316 Query: 308 HAASIAFVQASFGARQQGQGQALYAALSGTGGALGAL 344 A A + +QGQ Q AAL+ +G L Sbjct: 317 MPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.4 bits (118), Expect = 1e-08 Identities = 72/375 (19%), Positives = 130/375 (34%), Gaps = 16/375 (4%) Query: 30 PLLHSIAEQFGLSTASAGSIVIAAQLSYGAGLLLLAPLG----DLFEQRRLIVIMSVIST 85 P+L + S I L Y AP+ D F +R ++++ + Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLAL-YALMQFACAPVLGALSDRFGRRPVLLVSLAGAA 84 Query: 86 LGLVISACAPSLPWLILGTALTGLFSVVAQILVPMAATLSEPHQRGRAVGTLMSGLLLGI 145 + I A AP L L +G + G+ + A +++ +R R G + + G+ Sbjct: 85 VDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGM 144 Query: 146 LLARTAAGFMAELGGWRSIYVLAAVLMAVTAFALYRSLPQHHSHAGLKYPALIGSVFRLF 205 + G M + + AA L + LP+ H + F Sbjct: 145 VAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF 203 Query: 206 IEEPVLRLRSLLGLLAF--SLFGLFWTPLAFLLAREPYHYSDAVIGL-FGLAGAAGAL-S 261 + + + L + F L G L + + +H+ IG+ G +L Sbjct: 204 RWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQ 263 Query: 262 ANWAGRLADRGRGSLGTTVGLVALLLSWIPLGFAESSLLALLLGVLVLDLAVQLVHVSNQ 321 A G +A R +G++A +I L FA +A + VL+ + + + Sbjct: 264 AMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323 Query: 322 NAVIALRPEARTRLNAGYITCYFIGGALGSLLGTQLF-----QYQGWMGIVTAGLLIGAL 376 + E + +L + +G LL T ++ + GW I A L + L Sbjct: 324 LSRQV-DEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382 Query: 377 ALLVWGWAEHKRKRA 391 L G +RA Sbjct: 383 PALRRGLWSGAGQRA 397
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (298), Expect = 1e-34 Identities = 85/256 (33%), Positives = 127/256 (49%), Gaps = 21/256 (8%) Query: 7 LEGKAALVQGGSRGIGAAIVRRLAREGAQVAFTYASSEGPANDLVAEVKAAGGQALALRA 66 +EGK A + G ++GIG A+ R LA +GA +A + E +V+ +KA A A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPE-KLEKVVSSLKAEARHAEAFPA 64 Query: 67 DSADAAAVQLAVDDTVKAFGRLDILVNNAGVLAVAPLTEFDLADFDRTLAINVRSVFVAS 126 D D+AA+ + G +DILVN AGVL + +++ T ++N VF AS Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 127 QAAARYM--GQGGRIINIGSTNAERMPFAGGAPYAMSKSALVGLTKGMARDLGPQGIAVN 184 ++ ++YM + G I+ +GS N +P A YA SK+A V TK + +L I N Sbjct: 125 RSVSKYMMDRRSGSIVTVGS-NPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 185 NVQPGPVDTDMN--------------PASGEFAESLIPLMAIGRYGQVDEIASFVAYLAG 230 V PG +TDM S E ++ IPL + + +IA V +L Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAK---PSDIADAVLFLVS 240 Query: 231 PEAGYITGASLTADGG 246 +AG+IT +L DGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 286 bits (734), Expect = 8e-87 Identities = 215/729 (29%), Positives = 316/729 (43%), Gaps = 74/729 (10%) Query: 51 TNAATLTANGAVTRDILVNAGASVVLNATQVTATGRTPGV------RVTSGTASISNSQI 104 TN + A+GA + V + + L+ +T GR GV V A+I Sbjct: 206 TNVTAVPASGAPAA-VSVLGASELTLDGGHIT-GGRAAGVAAMQGAVVHLQRATIRRGDA 263 Query: 105 TAESTGLNAAIDLTDLRPSQADVTNSTITGGTFGAQINSSTVTLVNSTLVGANADAIGAQ 164 A A+ + + G +G ++ S+V L S + A +GA Sbjct: 264 PAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIV---EAPELGAA 320 Query: 165 LFDGNLHASAGSRVVGGQNGVSLRGDSGQPAKGNTLVLDASHVEGINGSAIAVGTVGGTP 224 + G G+RV + G S GN + + + +++ G Sbjct: 321 IRVGR-----GARVT-------VSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAG-- 366 Query: 225 ATATIQVLNGSTLKGGNGTLVEVGSLGIADITVSDSHLEGDIIVADGGSANLTLANQATL 284 A A + L L + G+ DI ++ G ++ LA+QA Sbjct: 367 AHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGT---SIGPLDVALASQARW 423 Query: 285 KGRLENLDRLALNSEGQWTMTGDAQLNDLSMDG-GSVQF---GDNGEFYTLQVANLEGNG 340 G +D L++++ W MT ++ + L + GSV F + G F L V L G+G Sbjct: 424 TGATRAVDSLSIDN-ATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSG 482 Query: 341 TFIMNVDFADGKSDLLEVTGNATGDHQILVSSTGKDPLADTELHMVHTD-AGDANFSL-- 397 F MNV G SD L V +A+G H++ V ++G +P + L +V T A F+L Sbjct: 483 LFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLAN 542 Query: 398 VGGAVDLGTFAYGLVQRGN-DWYLDASTRSLSNG-------------------------- 430 G VD+GT+ Y L GN W L + + Sbjct: 543 KDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPA 602 Query: 431 TKTILALANTA---------PTVWYGELTTLRSRMGEVRRNDGAAGGWVRSYGN-QYNAS 480 + + A AN A T+WY E L R+GE+R N A G W R + Q + Sbjct: 603 GRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGELRLNPDAGGAWGRGFAQRQQLDN 662 Query: 481 ASGFGYKQRQQGMSFGADGRLPVGDGNWLAGVTAGYSNSDLNLQGGSTGKVDSFHLGAYA 540 +G + Q+ G GAD + V G W G AGY+ D G G DS H+G YA Sbjct: 663 RAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGGYA 722 Query: 541 TWLDPQSGYYFDGVAKLNRYQNRAEVQLSDGTKTKGDYSNHGVGLSLEAGRHLKLGDGYF 600 T++ SG+Y D + +R +N +V SDG KG Y HGVG SLEAGR DG+F Sbjct: 723 TYIA-DSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWF 781 Query: 601 VEPYAQLAAMTIKGQSYHLDNGLRASGDDTHSLQGKLGTTAGRTFDYGEGRMVQPYLRAA 660 +EP A+LA G +Y NGLR + S+ G+LG G+ + GR VQPY++A+ Sbjct: 782 LEPQAELAVFRAGGGAYRAANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKAS 841 Query: 661 VAHEFVNGNQVRVNGNSFHNDLAGTRAELGAGVVAAWSQQWQAHAEFDYANGERLEQPWG 720 V EF V NG + +L GTRAELG G+ AA + +A ++Y+ G +L PW Sbjct: 842 VLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGRGHSLYASYEYSKGPKLAMPWT 901 Query: 721 VSVGLRYNW 729 G RY+W Sbjct: 902 FHAGYRYSW 910
>cloacin#Cloacin signature. Length = 551 Score = 40.9 bits (95), Expect = 5e-05 Identities = 41/123 (33%), Positives = 53/123 (43%), Gaps = 14/123 (11%) Query: 1415 PTGMTASGGGGR-PRRPDEDDPNWLGRG-----GGGGGGGGGGGGGWMTWMWVGVAALAT 1468 PTG+ GG E++P G G GGG G G GGG G L+ Sbjct: 24 PTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 1469 IAAVVTAG-AALAAVGALGAAAS---GAVSSAAATVAAGGSVGVSGYFLAKAAGTTIAGA 1524 +AA V G AL+ GA G A S GA+S+A A + A + G F G + G Sbjct: 84 VAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA----ALKGPFKFGLWGVALYGV 139 Query: 1525 IMS 1527 + S Sbjct: 140 LPS 142
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 772 bits (1994), Expect = 0.0 Identities = 262/871 (30%), Positives = 425/871 (48%), Gaps = 55/871 (6%) Query: 8 CRRFRLRLVCPLAICLSTGTALATPAPALGP--EFEASFLYLSPGQPRANVTRALHALSD 65 C R + + L A A AP F FL P A+++R + Sbjct: 15 CLHIRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAV-ADLSR----FEN 69 Query: 66 QKELPPGRYPVQLLVNLGPAGVRKLQFELSPDGRQLVPCLAPSLMAELGLRLDAIADPT- 124 +ELPPG Y V + +N G R + F + +VPCL + +A +GL +++ Sbjct: 70 GQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNL 129 Query: 125 ALDHACLDLPRLVPGALVDFDASQLRLAISIPQIALRRDMAGQVDPARWENGISAAFVSY 184 D AC+ L ++ A D Q RL ++IPQ + G + P W+ GI+A ++Y Sbjct: 130 LADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNY 189 Query: 185 QASLQQSDSRGRGSQNTQDLYLNSGINLAGWRLRSNQSWRRDG-----EGRQTWSRAYTY 239 S +R G+ + L L SG+N+ WRLR N +W + + W T+ Sbjct: 190 NFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTW 249 Query: 240 AQHDLPGTWGNITLGETFTSSDVFRSVPVTGLRLASDFDMLPDAMRSYAPTLRGVAQTRA 299 + D+ +TLG+ +T D+F + G +LASD +MLPD+ R +AP + G+A+ A Sbjct: 250 LERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTA 309 Query: 300 KLEVWQNGYPIYSTYVSPGPYAIDDLN-VGATGELEVVLTEADGQVRRFIQPYASITNLL 358 ++ + QNGY IY++ V PGP+ I+D+ G +G+L+V + EADG + F PY+S+ L Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369 Query: 359 RPGVWRYSTTLGRYNPANSS-ETPLLWQGTVAKGMPWNATLYGGLMASQGYTAVATGIAR 417 R G RYS T G Y N+ E P +Q T+ G+P T+YGG + Y A GI + Sbjct: 370 REGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGK 429 Query: 418 DLGAIGALSFDITHARSDITPVEQRTLQGMSYSARYSKAFN-SGTHLRFAGYRYSTQGYR 476 ++GA+GALS D+T A S + + G S Y+K+ N SGT+++ GYRYST GY Sbjct: 430 NMGALGALSVDMTQANSTL--PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYF 487 Query: 477 DFDEWISQRSNDRLFLG-------------------SRRSRVEGSINQRVGERSTLSLTL 517 +F + R N ++R +++ ++ Q++G STL L+ Sbjct: 488 NFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG 547 Query: 518 SQQDYWQRRDSQRQFQLNFSTSHNGVSYSLYGSQSLTQNAAGSDRQFGLTVSVPLEFGRS 577 S Q YW + QFQ +T+ ++++L S + G D+ L V++P Sbjct: 548 SHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLR 607 Query: 578 SSLSLDLQHAAHGTAQRASLHSQV-------------DRLSYNA----TLASNEQQQQSA 620 S +HA+ + L+ ++ + LSY+ + + Sbjct: 608 SDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTG 667 Query: 621 GLSMAYQAPQATFGAGLSAADDYRSLSLNMSGAALLHADGMELGPYLGETIGLVHVPDTA 680 ++ Y+ G S +DD + L +SG L HA+G+ LG L +T+ LV P Sbjct: 668 YATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAK 727 Query: 681 NVGLKNHGAIRTNAKGYALVPYLRPYRLNQLVLDTDQLDPDVEIINGTADAVPRRGAVIK 740 + ++N +RT+ +GYA++PY YR N++ LDT+ L +V++ N A+ VP RGA+++ Sbjct: 728 DAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVR 787 Query: 741 SRFEARRANRMVLTLATKDQQPLPFGSQLHDADGNVLGMVGTAGRVMVSVTDGPQRLEVR 800 + F+AR ++++TL T + +PLPFG+ + G+V G+V +S +++V+ Sbjct: 788 AEFKARVGIKLLMTL-THNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVK 846 Query: 801 WGEASENRCRFTLNPQSVPQQQGYRLQSLAC 831 WGE C QQQ S C Sbjct: 847 WGEEENAHCVANYQLPPESQQQLLTQLSAEC 877
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 75.0 bits (184), Expect = 4e-18 Identities = 52/245 (21%), Positives = 112/245 (45%), Gaps = 4/245 (1%) Query: 8 NWVALNTIVYREVRRFLRIWPQTLLPPAITMVLYFVIFGNLIGRQIGDMGGFTYMEYIVP 67 NW+A + R + + +LL ++Y G +G +G +GG +Y ++ Sbjct: 15 NWIA---VWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAA 71 Query: 68 GLIMMSVITNS-YGNVVSSFFGSKFQRSIEELMVSPVSPHIILVGYVLGGVLRGLAVGVI 126 G++ S +T + + + ++F + QR+ E ++ + + I++G + + G Sbjct: 72 GMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG 131 Query: 127 VTILSLFFTHLQVHHLGVTVVVVLLTATIFSLLGFVNAVFARNFDDISIIPTFVLTPLTY 186 + +++ + Q L + V+ LT F+ LG V A ++D T V+TP+ + Sbjct: 132 IGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILF 191 Query: 187 LGGVFYSINLLPPFWQTVSLANPVLHMVNSFRYGILGVSDISIGTAITFMLVATAVLYAL 246 L G + ++ LP +QT + P+ H ++ R +LG + + + + + + + L Sbjct: 192 LSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFL 251 Query: 247 CVRLL 251 LL Sbjct: 252 STALL 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 68.6 bits (167), Expect = 1e-13 Identities = 41/268 (15%), Positives = 81/268 (30%), Gaps = 18/268 (6%) Query: 520 RQEAAVKTAPARANAPVPSAVEEQQPAAPA-----APAPSVPEPSLFKGLVKSLVSLFAG 574 E +T N P+ ++ P+ P+ A P P A Sbjct: 984 EVEKRNQTVDT-TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 575 KEEPAAAPVVTAEKPATERTQRNEE---------RRNGRQQSRNRNGRRDEERKPREERA 625 + + V E+ ATE T +N E + N + ++G +E + E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 626 ERTPREERQPREERAPREERAPRE-ERAPRQPREDRRGNREERVRELREPLDAAPAAREE 684 T +E + + E +E + +P+Q + + + E RE ++ + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 685 RQPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREE 744 + P +E P E P + E + + + Sbjct: 1163 NTTADTEQPAKE-TSSNVEQPVTESTT-VNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 745 RAPREERQPRPPREERQPREAEQAAELA 772 R + P E + + +A Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 60.8 bits (147), Expect = 3e-11 Identities = 46/292 (15%), Positives = 89/292 (30%), Gaps = 14/292 (4%) Query: 711 PREERAPREERAPREERAPREERAPREERAPREERAPREERQPRPPREERQPRE-AEQAA 769 P E+ + + + EE A R + P PP P E E A Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-RVDEAPVPPPAPATPSETTETVA 1041 Query: 770 ELADEQLPNEELQQDEQEGSDDERPRRRSRGQRRRSNRRERQRNANGELIEGSDE--EGS 827 E + ++ ++ ++++EQ+ ++ R + + + + Q N + + E Sbjct: 1042 ENSKQE--SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 828 DEQPQQHQATELGAELAAGLAVTAAVASSNISAGAEAQANQQAERASAEAATTDNSEVAQ 887 ++ + E V S +++ Q + E T N + Q Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 888 PAEQVEAVAKAEEIAIAPVVEQPLSEPVAAIEAGAEPVVEVAPEPVVEQAPAVEPVVVAE 947 A + + VEQP++E V P +P V +E Sbjct: 1160 SQTNTTADTEQPAKETSSNVEQPVTE-----STTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 948 A---PVEAPVEAPAIEAGEVEKAQVAAEQAPAAELPAAVVETQPEVAAEPAA 996 + P + VE A ++ L V ++ A Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARA 1266 Score = 37.0 bits (85), Expect = 6e-04 Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 12/148 (8%) Query: 929 APEPVVEQAPAVEPVVVAEAPVEAPVEAPAIEAGEVEKAQVAAEQAPAAELPAAVVETQP 988 P + P+V A V+ P A E + AE + E Sbjct: 999 TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDA 1058 Query: 989 EVA-------AEPAATVVAAAPVVAEPAPVEAPAAVEAATVMLPNGRAPNDPREVRRRKR 1041 A+ A + V A E A + T + + + K Sbjct: 1059 TETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTET----KETATVEKEEKAKV 1114 Query: 1042 EAEAAAKAAQEAAAAGAPTVETADEQKP 1069 E E + + + +P E ++ +P Sbjct: 1115 ETEKTQEVPKVTSQV-SPKQEQSETVQP 1141 Score = 33.5 bits (76), Expect = 0.006 Identities = 37/185 (20%), Positives = 56/185 (30%), Gaps = 16/185 (8%) Query: 483 QRLRDDNPEVLNNQSSYEIA--ATETEEAPQPTATRTLVRQEAAVKT-APARANAPVPSA 539 + ++ V N + E+A +ET+E Q T T+ E K VP Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKET-QTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 540 VEEQQP-------AAPAAPAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPVVTAEKPATE 592 + P P A +P++ +S + A E+PA E+P TE Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Query: 593 RTQRNEERRNGRQQSRNRNGRRDEERKPREERAERTPREERQPREERA-PREERAPREER 651 T N G N +P + R R R+ P Sbjct: 1186 STTVN----TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241 Query: 652 APRQP 656 R Sbjct: 1242 NDRST 1246
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 79.5 bits (196), Expect = 3e-17 Identities = 37/186 (19%), Positives = 79/186 (42%), Gaps = 9/186 (4%) Query: 617 IEAATNEVIKSAELTILILVYICVAVMCLITFRSFAATLCIVLPLVLTSVLGNALMAFMG 676 ++ + +EV+K+ L + V ++ + ++ ATL + + + + A++A G Sbjct: 333 VQLSIHEVVKT-----LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFG 387 Query: 677 IGVKVATLPVVALGVGIGVDYGIYIYSRLESFLR-AGLPLQEAYYQTLRSTGKAVLFTGL 735 + T+ + L +G+ VD I + +E + LP +EA +++ A++ + Sbjct: 388 YSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAM 447 Query: 736 CLAIGVCTWIF---SAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLIKPEKIKAGKQ 792 L+ F S + + + ++ AL L PAL L+KP + + Sbjct: 448 VLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEN 507 Query: 793 GGSIFA 798 G F Sbjct: 508 KGGFFG 513 Score = 46.8 bits (111), Expect = 4e-07 Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 10/211 (4%) Query: 244 VMVAMFFGVALVITWVLLYWFTWCIRSTIAVLITTLVAVVWQLGLMHVVGFGLDPYSMLV 303 V+ +F + LV +++Y F +R+T+ I V ++ ++ G+ ++ +M Sbjct: 340 VVKTLFEAIMLVF--LVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG 397 Query: 304 PFLIFAIGISHGVQKINGIA-LQSSDAENALTAARRTFRQLFLPGMIAILADAVGFITLL 362 L + + + + + + D A ++ Q+ + + + FI + Sbjct: 398 MVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMA 457 Query: 363 IID--IGVI-RELAIGASIGVAVIVFTNLILLPVAISYI--GISKKAIERSKKDATREHP 417 G I R+ +I +A+ V LIL P + + +S + E + Sbjct: 458 FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNT 517 Query: 418 FWRLLSNFASAKVAPV--SIALALVAFAGGL 446 + N + V + S L+ +A + Sbjct: 518 TFDHSVNHYTNSVGKILGSTGRYLLIYALIV 548 Score = 35.6 bits (82), Expect = 0.001 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 2/122 (1%) Query: 622 NEVIKSAELTILILVYICVAVMCL-ITFRSFAATLCIVLPLVLTSVLGNALMAFMGIGVK 680 E + + L+ + V +CL + S++ + ++L + L V Sbjct: 864 QERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKND 923 Query: 681 VATLPVVALGVGIGVDYGIYIYSRLESFLRA-GLPLQEAYYQTLRSTGKAVLFTGLCLAI 739 V + + +G+ I I + + G + EA +R + +L T L + Sbjct: 924 VYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 740 GV 741 GV Sbjct: 984 GV 985
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 2e-05 Identities = 22/204 (10%), Positives = 62/204 (30%), Gaps = 7/204 (3%) Query: 381 TRLDAELEAQRTARQQADLHVAEGQQQLQQLDEQQQRSLQQLAQIDAALADSQHLAGLAN 440 +A+ +++ QA L Q + ++ + L+ + + + L + Sbjct: 130 LGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTS 189 Query: 441 AWQAYLPQLKQVMLIGGRLSKGREELPGLQASASEANAQWQAQHDAFELLFREAKAEPQA 500 + + + + L +A A+ + + Sbjct: 190 LIKEQFSTWQN------QKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243 Query: 501 LAEQIDLLGNMLQDNRKQQRAVEELARLHGREQELRSQLDGLRER-QQHAMQQRQQLIGE 559 L +Q +L+ K AV EL + +++ S++ +E Q + +++ + Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK 303 Query: 560 GTAAKAELEAAEQALNLTRQLLER 583 + L + + Sbjct: 304 LRQTTDNIGLLTLELAKNEERQQA 327 Score = 38.7 bits (90), Expect = 1e-04 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 6/184 (3%) Query: 249 AEQARQRQLEQQRTWLNEQRQLQTQLSEAGAALHTAEQNWQAMAEQRLDLQRLERLAPQR 308 Q L Q L + R S L + + + + + L + + Sbjct: 135 DTLKTQSSLLQA--RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192 Query: 309 HQFHRQQALTAQLTPLAAQIAEQQQLQADLLERTQELELALVAARQTLADSQTKHSESAP 368 QF Q Q + +++ + +L R E + L D + + A Sbjct: 193 EQFSTWQNQKYQKE---LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAI 249 Query: 369 RLRQAFAGQDSLTRLDAELEAQRTARQQADLHVAEGQQQLQQLDEQQQRS-LQQLAQIDA 427 ++ EL ++ +Q + + +++ Q + + + L +L Q Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 428 ALAD 431 + Sbjct: 310 NIGL 313 Score = 37.9 bits (88), Expect = 3e-04 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 25/160 (15%) Query: 785 LSDDPANAFLSLDQQIAQRLQQLEQRKDEQDEQHARQLQLDKLRDQQQTRLQA------- 837 L D+P +S ++ + EQ Q++++ ++L LDK R ++ T L Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 838 ----QQQL-------------QHTLAALDEQRLQAQAQLAALLGEHTSAEAWQHHLEVHL 880 + +L +H + + + ++A +L + E+ + Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 881 EQARA-LDAQTAERLQALRNQGVQLAAELKANTQRQQALE 919 + + ++L+ + L EL N +RQQA Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASV 329 Score = 36.7 bits (85), Expect = 6e-04 Identities = 20/159 (12%), Positives = 46/159 (28%), Gaps = 19/159 (11%) Query: 721 QSALLALQKDAARLTQQLQAAQEARQQAQRHLDHQHQALANDEQHLQQGLDDLASVLPAD 780 + Q + L + R + N + + LDD +S Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARI----NRYENLSRVEKSRLDDFSS----- 242 Query: 781 VLKALSDDPANAFLSLDQQIAQRLQQLEQRKDEQDEQHARQLQLDKLRDQQQTRLQAQQQ 840 L +A L + + + + +L K + ++ + L ++ Q Sbjct: 243 -LLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA------KEEYQLVTQL 295 Query: 841 LQHTLAALDEQRLQAQAQLAALLGEHTSAEAWQHHLEVH 879 ++ + ++ Q + L E E Q + Sbjct: 296 FKNEIL---DKLRQTTDNIGLLTLELAKNEERQQASVIR 331 Score = 31.7 bits (72), Expect = 0.021 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 25/226 (11%) Query: 313 RQQALTAQLTPLAAQIA--EQQQLQADLLERTQELELALVAARQTLADSQTKHSESAPRL 370 + L A+L QI + + L+ E V+ + L + + + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Query: 371 RQAFAGQDSLTRLDAELEAQRTARQQADLHVAEGQQQLQQLDEQQQRSLQQLAQIDAALA 430 Q + + +L + AE + L ++++ + L A Sbjct: 200 NQKYQKELNLDKKRAERLTVLARIN--------RYENLSRVEKSRLDDFSSLLHKQAI-- 249 Query: 431 DSQHLAGLANAWQAYLPQLKQVMLIGGRLSKGREELPGLQASASEANAQWQAQHDAFELL 490 A A L Q + + L + +L +++ A + +L Sbjct: 250 ----------AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEE-YQLVT--QLF 296 Query: 491 FREAKAEPQALAEQIDLLGNMLQDNRKQQRAVEELARLHGREQELR 536 E + + + I LL L N ++Q+A A + + Q+L+ Sbjct: 297 KNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.7 bits (100), Expect = 4e-06 Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 9/143 (6%) Query: 420 EAALDAYEQALERQPDFKPALDNQALIQQLLQQREAQ--AEEQPAKDDAQGTPGSETEGN 477 E E A E + + K + Q + +E Q ++ A + + ETE Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 478 SSSASSPAQGTPGNDEQANAEQPGQDSNNSQAT------PGNQGGDDDSITQPPKRPVST 531 +Q +P EQ+ QP + P +Q QP K S Sbjct: 1120 QEVPKVTSQVSP-KQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178 Query: 532 SLDAEQRQALEQWLREIPDNPAQ 554 + +NP Sbjct: 1179 VEQPVTESTTVNTGNSVVENPEN 1201
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (314), Expect = 5e-37 Identities = 81/255 (31%), Positives = 122/255 (47%), Gaps = 16/255 (6%) Query: 8 GRTVLITGAGGGIGASIARLYCEEGARVALVDFDEQSVSELSQQLCTAGHLVAWAKADVA 67 G+ ITGA GIG ++AR +GA +A VD++ + + ++ L ADV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 68 NFDQCSRACAEFSEQLGPIDTLINNAGVSPKHQGAPAPIWEMDPLEWDRVVGINLTGSFN 127 + A ++GPID L+N AGV P I + EW+ +N TG FN Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVL-----RPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 128 LVRALAPGMVERRFGRIVNMSSVAGSAFLPIVAAHYSATKAAIIGFTRHLAGELGPYGIT 187 R+++ M++RR G IV + S +AA Y+++KAA + FT+ L EL Y I Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAA-YASSKAAAVMFTKCLGLELAEYNIR 181 Query: 188 ANALAPGRIETPLLKTVSAQAN---QAVVDE-------TPLGRLGTPLEVAKAACFLTSN 237 N ++PG ET + ++ A N Q + PL +L P ++A A FL S Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 238 DSDFITGQVVDVAGG 252 + IT + V GG Sbjct: 242 QAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 11/146 (7%) Query: 299 LFTITGGIGQIVWGWISDRAGRKLCLVLVFAWLAVGMYLFKYSSVSLTWLIAIQLFAGFA 358 L+ + V G +SDR GR+ L++ A AV + + W++ I Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF--LWVLYIGRIVAGI 108 Query: 359 MNAPYTLVYAIAFDSAKQGTTGLAGSIVNVGIYAGGFGPFVIGMFIGAG-GGFEQSAGYN 417 A + A D + G + FG GM G GG + Sbjct: 109 TGATGAVAGAYIADITDGDE-----RARHFGFMSACFG---FGMVAGPVLGGLMGGFSPH 160 Query: 418 YALYFISGLMVLAAIITIFFTRETTG 443 + + L L + F E+ Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHK 186
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 43.7 bits (103), Expect = 1e-06 Identities = 29/191 (15%), Positives = 69/191 (36%), Gaps = 18/191 (9%) Query: 251 IWLAIAVYFLHQVSVYSVIFFLPGIIGTYGGLSSLQIGLLNSIPWIAAALGAAFLPKYAT 310 + + + +V + +P ++ LS+ +IG + P + + ++ Sbjct: 258 FMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILV 317 Query: 311 TPKISRKIMFGGLLLMSAGLTLAAYT---TPLIALIGFTLTASMFFVVQPVIFLFASSRL 367 + ++ G+ +S A++ T I + VI SS L Sbjct: 318 DRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSL 377 Query: 368 AGVGMAAGLALVNTFGITGGFFGPSLLG---------------FVEQTTGSTKNGLIIVA 412 AG++L+N G +++G V+Q+T N L++ + Sbjct: 378 KQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFS 437 Query: 413 ALLTLAAFLSL 423 ++ ++ ++L Sbjct: 438 GIIVISWLVTL 448
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.035 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 6/83 (7%) Query: 292 DWLVQVPWKAQSKVRLDLSKAEEILDADHYGLEEVKERILEYLAVQKRVKKIRGP----- 346 DW+ W ++ L D+ +++ + V ++ P Sbjct: 537 DWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFD 596 Query: 347 -VLCLVGPPGVGKTSLAESIAAA 368 + L G G+GK++L ++ Sbjct: 597 YSVVLEGTGGIGKSTLINTLVGL 619
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 119 bits (300), Expect = 4e-39 Identities = 48/88 (54%), Positives = 62/88 (70%) Query: 2 NKSELIDAIAASADIPKAVAGRALDAVIDSVTGALKAGDDVVLVGFGTFSVKERAERDGR 61 NK +LI +A + ++ K + A+DAV +V+ L G+ V L+GFG F V+ERA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKTIKIAAAKVPGFKAGKGLKDAV 89 NPQTG+ IKI A+KVP FKAGK LKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 50.6 bits (121), Expect = 4e-10 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 13/123 (10%) Query: 5 ILLVEDNPRDLELTLLALERSQLANEVIVLRDGADALDYLLRRNTYAERADGNPAVLLLD 64 IL+ +D+ + AL R +V + + A ++ A G+ +++ D Sbjct: 6 ILVADDDAAIRTVLNQALSR--AGYDVRITSNAATLWRWI---------AAGDGDLVVTD 54 Query: 65 LKLPKVDGLEVLREVRATPELRSIPTVMLTSSREEPDLLRAYELGVNAYVVKPVEFKEFV 124 + +P + ++L ++ +P +++++ ++A E G Y+ KP + E + Sbjct: 55 VVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 125 AAI 127 I Sbjct: 113 GII 115
>PF06580#Sensor histidine kinase Length = 349 Score = 40.2 bits (94), Expect = 2e-05 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 28/143 (19%) Query: 591 LLNFSQMGRSALRLSDVDLNAL---VEAIRQELAPD---YEGR-EIIWDVAPLPKVIGDP 643 L + S++ R +LR S+ +L + + L +E R + + P + P Sbjct: 197 LTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVP 256 Query: 644 AFINLALHNLIANAIKY--TRGREPARIEIGAHQHEEEIEVYIRDNGVGFDMAYANKLFG 701 + + L+ N IK+ + + +I + + + + + + G Sbjct: 257 PML---VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG------------- 300 Query: 702 VFQRLHRMEDFEGTGIGLASVRR 724 L E TG GL +VR Sbjct: 301 ---SLALKNTKESTGTGLQNVRE 320
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.2 bits (83), Expect = 2e-04 Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 26/129 (20%) Query: 32 VVFVGPSGCGKSTLLRLIAGLEEVSGGHITLDGVDITDTAPAKRDLAMVFQTYALYPHMT 91 VV G G GKSTL+ + GL+ S H + +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY---- 645 Query: 92 VRKNLSFALDLAGVDKREVQA-KVDNAARILELQPLLERKPRQLSGGQRQRVAIGRAIVR 150 LS ++ + + +A K ++R + R + RQ V Sbjct: 646 ---ELS---EMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHP---RQVVIWCTT--- 693 Query: 151 NPKIFLFDE 159 N + +LFD Sbjct: 694 NKRQYLFDI 702
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 32.0 bits (72), Expect = 0.005 Identities = 95/422 (22%), Positives = 155/422 (36%), Gaps = 49/422 (11%) Query: 7 ACLAAACLSLPLLAQGAETLTIATVNNNDMIRMQRLAKVFEEQHPDIRLKWVVLEENVLR 66 + L S LA+ E + +N + LA+V ++ D +K V + L Sbjct: 13 SALTTMMFSASALAKIEEGKLVIWINGDK--GYNGLAEVGKKFEKDTGIKVTVEHPDKLE 70 Query: 67 QRLTTDIATQGGQFDVLTIGMYEAALWGAKGWLEPMTDLPADYNLDDVFPSVRNGLSANG 126 ++ AT G D++ + G L +T P D ++P + + NG Sbjct: 71 EKFPQVAATGDGP-DIIFWAHDRFGGYAQSGLLAEIT--PDKAFQDKLYPFTWDAVRYNG 127 Query: 127 TLYALPFYAEASITYYRKDLFQNAGLNMPEQP-TWTQLGEYAAKLHHPDQGQYGICLRGK 185 L A P EA Y KDL +P P TW ++ +L +G+ + + Sbjct: 128 KLIAYPIAVEALSLIYNKDL-------LPNPPKTWEEIPALDKELKA--KGKSALMFNLQ 178 Query: 186 AGWGENMALIGTVANAFGARWFNEQWQPEFTG---SAWKNALNFYVDTLKQYGPPGASSN 242 + + AF ++ N ++ + G + K L F VD +K + Sbjct: 179 EPYFTWPLIAADGGYAF--KYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDY 236 Query: 243 GFNENLALFNSGKCAMWVDASVAGSFVTDKTQSKVADQVGFTFAPKEVTDKGASWLYSWA 302 E A FN G+ AM ++ A S + SKV G T P ++ + Sbjct: 237 SIAE--AAFNKGETAMTINGPWAWSNI---DTSKV--NYGVTVLPTFKGQPSKPFVGVLS 289 Query: 303 LAIPSSSKAKDAAKAF--STWATSEAYAKLVADKEGVANVPPGTRASTYSDAYLAAAPFA 360 I ++S K+ AK F + T E + DK P G A + LA P Sbjct: 290 AGINAASPNKELAKEFLENYLLTDEGLEAVNKDK------PLGAVALKSYEEELAKDPRI 343 Query: 361 KVTLESLKRVDPNHPTLKPVPYVGIQLVTIPEFQAIGTQVGKLFSAALTGQMKVDQVLAA 420 T+E+ ++ G + IP+ A V A +G+ VD+ L Sbjct: 344 AATMENAQK--------------GEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKD 389 Query: 421 AQ 422 AQ Sbjct: 390 AQ 391
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 56.0 bits (135), Expect = 1e-10 Identities = 70/335 (20%), Positives = 122/335 (36%), Gaps = 13/335 (3%) Query: 15 IGLCFLVALLEGLDLQATGIAAPHMAKAFALTPAMLGWVFSAGLLGLLPGAFIGGWLADR 74 I LC L L+ ++ P +A F PA WV +A +L G + G L+D+ Sbjct: 17 IWLCILS-FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 75 LGRKNILIVAVLLFGGFSLGTALADSYASLLV-ARLMTGLGLGAALPILIALA-SEAAPE 132 LG K +L+ +++ S+ + S+ SLL+ AR + G G AA P L+ + + P+ Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFPALVMVVVARYIPK 134 Query: 133 RLRSTAVSITYCGVPLGGAIASIIGMAPLGEDWRVVFYVGGIAPIVIALVLVVWLKESQA 192 R A + V +G + IG + + I+ L+ LK+ Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194 Query: 193 FRAQ---TGEKVAGEGMLAQLFGPGHASRTLLLWVACFFTLTVLYMLLNWLPSLLIGQGF 249 + G + G++ + S + L+ F + V ++ P + G G Sbjct: 195 IKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 250 SRPQAGTVQILFNLGGAAGSF--LTGRMMDKGHARRAVFIAYIGMLAALAGLGLSTSFAF 307 + P V + G F + MM H I + + + + Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG 314 Query: 308 MLVAGFIAGYCAIGGQLVL----YALAPTLYSTQV 338 +LV Y G L + L +T Sbjct: 315 ILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW 349
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 30.1 bits (67), Expect = 0.017 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 121 GSSALTASAGALAGFAAYGGTMALGVASTGTAISSLSGVAAYNATLAALGGGALSAGGG 179 S+LTA G+ A G + G ST TA S +A Y +T A G L+AG G Sbjct: 460 EDSSLTAGYGSTQT-AQKGSDLTAGYGSTSTAGYESSLIAGYGSTQTAGYGSTLTAGYG 517 Score = 29.7 bits (66), Expect = 0.017 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 121 GSSALTASAGALAGFAAYGGTMALGVASTGTAISSLSGVAAYNATLAALGGGALSAGGG 179 S+LTA G+ A G + G STGTA + S +A Y +T A +AG G Sbjct: 268 EDSSLTAGYGS-TQTAQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYG 325 Score = 28.6 bits (63), Expect = 0.043 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 121 GSSALTASAGALAGFAAYGGTMALGVASTGTAISSLSGVAAYNATLAALGGGALSAGGG 179 +S LTA G+ A G + G STGTA S S +A Y +T A +L+AG G Sbjct: 556 YNSVLTAGYGSTQT-AREGSDLTAGYGSTGTAGSDSSIIAGYGSTQTASYHSSLTAGYG 613 Score = 28.6 bits (63), Expect = 0.045 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 121 GSSALTASAGALAGFAAYGGTMALGVASTGTAISSLSGVAAYNATLAALGGGALSAGGG 179 S+LTA G+ A G + G STGTA + S +A Y +T A +AG G Sbjct: 364 EDSSLTAGYGSTQT-AQKGSDLTAGYGSTGTAGADSSLIAGYGSTQTAGEESTQTAGYG 421
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 33.6 bits (76), Expect = 0.002 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 10/88 (11%) Query: 151 ELANQRSNL----NATDGSVNTSKKDKSADEFIRYLDQNEAQRKAEISDLQSKQRSVGLT 206 E A R+NL NA N S +K+ E I+ +NE + + D+Q + ++ L Sbjct: 172 ERAKNRANLENLTNAMSNPQNLSN-NKNLSELIKQQRENELDQMERLEDMQEQAQANAL- 229 Query: 207 DKERKTLNKLEKLDAVDPGKLREKDRIA 234 K+ + LNK + +AV + R KD+I+ Sbjct: 230 -KQIEELNKKQAEEAV---RQRAKDKIS 253
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 49.7 bits (118), Expect = 3e-09 Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 38/243 (15%) Query: 4 NALICGASQGIGLALCEQLLARDDVAQVWAVSRQARGSEALAALAAAHGERLVRIDCDAR 63 A I GA+QGIG A+ L ++ A + AV E + + A D R Sbjct: 10 IAFITGAAQGIGEAVARTLASQG--AHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 64 SEQSLEALAREVSRTCTHLDLVISTLGILQRDGAKAEKALAQLDLAGLQASFATNAFAPV 123 +++ + + R +D++++ G+L+ + L +A+F+ N+ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLR------PGLIHSLSDEEWEATFSVNSTGVF 121 Query: 124 LLLKHLLALLRKQPCTFAALSARVGSIGDNRLG----GWYSYRASKAALNQLLHTASIEL 179 + + + + S + ++G N G +Y +SKAA +EL Sbjct: 122 NASRSVSKYMMDRR------SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 180 KRINPASTVLVLHPGTTDTQLSQP------------------FQANVPAEQLFEPAFAAQ 221 N ++ PG+T+T + F+ +P ++L +P+ A Sbjct: 176 AEYNIRCN--IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 222 CIL 224 +L Sbjct: 234 AVL 236
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 40.1 bits (94), Expect = 2e-05 Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 484 NERLSIPQLIAAYTLNGAYQLGLEKEIGSITEGKRADIIIMEQDLF 529 N+ + + IA YT+N A GL EIGS+ GKRAD+++ F Sbjct: 397 NDNFRVKRYIAKYTINPAIAHGLSHEIGSLEVGKRADLVLWNPAFF 442 Score = 32.8 bits (75), Expect = 0.004 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%) Query: 4 AAELIIHNARIYTVDPHQPWADAVAIQGERILRVGDKA-------SVMAHAGPSTRLLDA 56 A + +I NA I +D + ++ RI +G KA V GP T ++ Sbjct: 67 AVDTVITNALI--LDHWGIVKADIGLKDGRIAAIG-KAGNPDMQPGVTIIVGPGTEVIAG 123 Query: 57 DGKLVLPGFVESHWHFSSTAFAFQALVN 84 +GK+V G ++SH HF +AL++ Sbjct: 124 EGKIVTAGGMDSHIHFICPQQIEEALMS 151
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 78.5 bits (193), Expect = 3e-20 Identities = 44/207 (21%), Positives = 84/207 (40%), Gaps = 6/207 (2%) Query: 1 MSGLREQQKAMRRETISRTALGLFEAQGYQTTTMEQIARLAAVSVPTVFAYFGSKQEILL 60 M+ +Q+ R+ I AL LF QG +T++ +IA+ A V+ ++ +F K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 EKLREADHRAVTQARRRLPEF-EDALDALCCYEEHLTDYAFAVLPAPLWREILPPLLPLL 119 E ++ +F D L L H+ + L EI+ + Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 GGDQQALPAAYKRVNDALVEELKHLLQDLCDSGKLRADLDVGYAAFLINDY-GHLQLLRL 178 G+ + A + + + ++ L+ ++ L ADL AA ++ Y L L Sbjct: 121 -GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWL 179 Query: 179 CNSETLDMPAHRTQVRMFMAILLAGMR 205 ++ D+ + R ++AILL Sbjct: 180 FAPQSFDLK---KEARDYVAILLEMYL 203
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 89.5 bits (222), Expect = 1e-21 Identities = 60/412 (14%), Positives = 117/412 (28%), Gaps = 90/412 (21%) Query: 15 EPSRKRKVWLLGLLLVVLLAGAGAWAWYSLIGRWHESTDDAYVNGNVVEITPLVTGTVIS 74 E R+ L+ ++ L A + + + +G EI P+ V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 75 IGADDGDLVHAGQVLLQFDPADSEVALQAAQAKLARTVRQVRGLYSNVDSL--------- 125 I +G+ V G VLL+ +E Q+ L + + S+ Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 126 ----------------------KAQLQTRQAELQKARQNYNRR----------------- 146 K Q T Q + + N +++ Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 147 -----------KVLADSGAI--------------AAEEISHARDDLTVAQAAVNSARQQL 181 L AI A E+ + L ++ + SA+++ Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 182 NTSTALVDDTVVSSHPEVMAAAADLRQ----AYLDHARTTLVAPVTGYVAKRTVQ-LGQR 236 T L + ++ + L + + APV+ V + V G Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 237 LQPGTATMAVIPLDEV-WIDANFKETQLRDMRIGQPVEI--SADLYGSDVKYSGTVDSLG 293 + M ++P D+ + A + + + +GQ I A Y G V ++ Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Query: 294 AGTGSAFALLPAQNATGNWIKIVQRVPVRIHLSPDQLKDHPLRIGLSTVVEV 345 G ++ + + K+ PL G++ E+ Sbjct: 410 LDA-------IEDQRLGLVFNVIISIEE--NCLSTGNKNIPLSSGMAVTAEI 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 124 bits (314), Expect = 4e-33 Identities = 84/403 (20%), Positives = 162/403 (40%), Gaps = 28/403 (6%) Query: 19 IGLSLATFMQVLDTTIANVALPTISGNLGVSSEQGTWVITSFAVSNAIALPLTGWLSRRF 78 I L + +F VL+ + NV+LP I+ + WV T+F ++ +I + G LS + Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 79 GEVKLFIWATLLFVLASFLCGISQSMPELVGF-RVLQGVVAGPLYPMTQTLLIAVY-PPA 136 G +L ++ ++ S + + S L+ R +QG +P +++A Y P Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMVVVARYIPKE 135 Query: 137 KRGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFF---INVPIGLFAAAVVRQQMRA 193 RG A L+ + + GP +GG I W ++ I + F ++++++R Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR- 194 Query: 194 RPVVTSRQPMDYIGLLTLIVGVGALQVVLDKGNDLDWFESSFIIIGSLISVVFLAIFIIW 253 + D G++ + VG+ + F +S+ I ++SV+ IF+ Sbjct: 195 -----IKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKH 239 Query: 254 ELTDRHPVVNLRLFAHRNFRIGTIVLVGGYAGFFGINLILPQWLQTQMGYTATWAGLAVA 313 P V+ L + F IG + + G ++P ++ + G + Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 314 PIGLLPVIMS-PFVGKYAQRFDLRVLA--GLAFLAIGASCFMRAGFTNEVDFQHIALVQL 370 G + VI+ G R + G+ FL++ F+ A F E + ++ + Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS---FLTASFLLETTSWFMTIIIV 356 Query: 371 FMGIGVALFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSF 413 F+ G++ +I+ S L + G L F L Sbjct: 357 FVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 43.5 bits (102), Expect = 2e-07 Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 32/188 (17%) Query: 3 IDPHKATLLVVDIQEKLIGAMSDA----EGTRARARWLLAACTDLALPIVISEQYPKGLG 58 DP++A LL+ D+Q + A + A R L C L +P+V + Q P Sbjct: 26 PDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQ-PGSQN 84 Query: 59 HTLPELL-------------------AAAPAAEVVEKTHFSCVAAQCMPTSLL------A 93 LL AP + + T + A + LL Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTN--LLEMMRKEG 142 Query: 94 REQVIVCGMETHVCVLQTVLGLLGLGKQVFLVEDACDSRTLANKAAGLERMRQAGAQVVT 153 R+Q+I+ G+ H+ L T + F V DA +L LE A V Sbjct: 143 RDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCAFTVM 202 Query: 154 REMVLFEL 161 + +L +L Sbjct: 203 TDSLLDQL 210
>adhesinb#Adhesin B signature. Length = 310 Score = 39.8 bits (93), Expect = 7e-06 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 13/169 (7%) Query: 133 WLNPTNLGRMADVLANDLERLAPADKAKIQGNLAGLKRQLLELTASSQTKLAEV--DNLS 190 WLN N A +A L PA+K + NL +L L ++ K + + Sbjct: 142 WLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEKFNNIPGEKKM 201 Query: 191 VVSLSERLGYLASGLNLDVVE-QALPAEGKWDEAALKALGENLKSQDVALVLDHRQPDAA 249 +V+ Y + N+ + E + +K L E L+ V + D Sbjct: 202 IVTSEGCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDR 261 Query: 250 VAEVI-KASGATL---LVVESDPQDALAG------LKASVDQVVGALSK 288 + + K + + + +S + G +K +++++ LSK Sbjct: 262 PMKTVSKDTNIPIYAKIFTDSVAEKGEEGDSYYSMMKYNLEKIAEGLSK 310
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 55.8 bits (134), Expect = 1e-11 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 12/191 (6%) Query: 23 RKAALLMIDFMQGYTTPGAPLYAPGVVTAVEQAAVLLALARDCGTLVVHTNIRYQAPHFA 82 +A LL+ D MQ Y A V L G VV+T + + + Sbjct: 29 NRAVLLIHD-MQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYT-AQPGSQNPD 86 Query: 83 DGGV----WVRKAPVMKDMVEGNPLAAFCEAVVPWADEPVLTKQYASAFFGTSLAPLLHA 138 D + W P + + + P D+ VLTK SAF T+L ++ Sbjct: 87 DRALLTDFW---GPGLNSGPYEEKII---TELAPEDDDLVLTKWRYSAFKRTNLLEMMRK 140 Query: 139 QGIDTVVLAGCSTSGCIRASAVDALQHGLRTIVVRECVGDRHPAPHEANLFDIDSKYGDV 198 +G D +++ G +A +A ++ V + V D H+ L + Sbjct: 141 EGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAAGRCAFT 200 Query: 199 VSLQEAMAQLQ 209 V + QLQ Sbjct: 201 VMTDSLLDQLQ 211
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 32.4 bits (74), Expect = 0.002 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 15/92 (16%) Query: 57 RQMLQTVRPEAVIVANPNNLHVATAL--DCVEAGVPVLVEKPIGVHLDEVRALVEASRRC 114 R M + V+ +V+VANP H+A + E +P++ K +V+ + + + Sbjct: 248 RNMRENVKRSSVVVANPT--HIAIGILYKRGETPLPLVTFKYTD---AQVQTVRKIAEEE 302 Query: 115 RVPVLVGHHRRHNPLIASARGVIAEGALGRLV 146 VP+L PL AR + + + + Sbjct: 303 GVPILQRI-----PL---ARALYWDALVDHYI 326
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.023 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 173 FLEMTGHMRENVIGRSVYEVDVLENAERKELAIERLMEGATIPQMQAELRLPDGGSK 229 F M ++ VI ++ +V V E +EL +R ME + QMQ L D S Sbjct: 811 FAAMLESLKYEVI-STLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ-LSHQDDDSA 865
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.042 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 12/86 (13%) Query: 566 IAAYLGGTEYQAQPRAQAW-------AGSRDAVLHVRDLCIDYGAAPVVEGVDLVVNPG- 617 ++ ++ PR + W +R L + G ++ V V+ PG Sbjct: 535 FRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQL-VGKYILMGHVARVMEPGC 593 Query: 618 --ELIAIL-GANGAGKSSILQALAGL 640 + +L G G GKS+++ L GL Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGL 619
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 302 bits (775), Expect = 8e-95 Identities = 146/656 (22%), Positives = 263/656 (40%), Gaps = 88/656 (13%) Query: 106 VFNFTDQPIEAVINSVMGDLLHENYSISQGVKGSVSFSTSKPVTKQQALSILETLLSWTD 165 +F I+ IN+V +L ++ I V+G+++ + + ++Q ++L Sbjct: 31 SASFKGTDIQEFINTVSKNL-NKTVIIDPSVRGTITVRSYDMLNEEQYYQFFLSVLDVYG 89 Query: 166 NAMIRQGER--YVILPADKAVAGKLVPQVPVAQPATG--LAARLYPLRYIGASEMQKLLK 221 A+I V+ D A VP A P G + R+ PL + A ++ LL+ Sbjct: 90 FAVINMNNGVLKVVRSKDAKTAA--VPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLR 147 Query: 222 PFVRENAFLLV--DPARNVISLAGTPDELANYQDTIDTFDVDWLKGMSIGVYGLQRASVA 279 V NV+ + G + + VD S+ L AS A Sbjct: 148 QLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIV--ERVDNAGDRSVVTVPLSWASAA 205 Query: 280 ELMPQLQKLFGPDSG--MPLSDMVRFMPNERTNSIVAISAQPEYLQEVGDWIRTIDEGGG 337 +++ + +L S +P S + + +ERTN+++ +S +P Q + I+ +D Sbjct: 206 DVVKLVTELNKDTSKSALPGSMVANVVADERTNAVL-VSGEPNSRQRIIAMIKQLDRQQA 264 Query: 338 NEPQLFVYDVRNMKAADLARYLRQIYGSGQINDDKAASVAPGLKTTSLTSLNGTGSQSGQ 397 + V ++ KA+DL + Sbjct: 265 TQGNTKVIYLKYAKASDLV-------------------------------------EVLT 287 Query: 398 GLSGMGMNTQASIREAPSEDDYEDTGQPEASSAESADGSVKSLEESVRITAQKSSNQLLV 457 G+S + + + + + D ++ I A +N L+V Sbjct: 288 GISSTMQSEKQAAKPVAALDK------------------------NIIIKAHGQTNALIV 323 Query: 458 RTRPAQWKEIESAIKRLDSPPLQVQIETRILEVKLTGDLDLGVQWYLGRLAG-NSSSTTV 516 P ++E I +LD QV +E I EV+ L+LG+QW +++ + Sbjct: 324 TAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGL 383 Query: 517 ANESGSQGAL----------GAGGVALGSASMFYSFVSSNLQVALRALETRGLTQVLSAP 566 + GA + F N + L AL + +L+ P Sbjct: 384 PISTAIAGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATP 443 Query: 567 SLVVLNNQQAQIQVGDNIPISQTTVNTSDSDTTLSSVEYVQTGVILDVVPRINPGGLVYM 626 S+V L+N +A VG +P+ T T+ D ++VE G+ L V P+IN G V + Sbjct: 444 SIVTLDNMEATFNVGQEVPV-LTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLL 502 Query: 627 DIQQQVSDADDSAVTTTQP-NPRISSRAVSTQVAVQSGQTVLLGGLIKQDNGQSDTRVPG 685 +I+Q+VS D+A +T+ ++R V+ V V SG+TV++GGL+ + + +VP Sbjct: 503 EIEQEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPL 562 Query: 686 LSSIPGLGWLFGSTSKSRDRTELIVLITPRVVNNPEQARQVTADYRQQMQVLREQA 741 L IP +G LF STSK + L++ I P V+ + ++ RQ ++ + + Sbjct: 563 LGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQ 618
>PERTACTIN#Pertactin signature. Length = 922 Score = 27.0 bits (59), Expect = 0.043 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 5/82 (6%) Query: 22 WMLVAPNPPQWLPAHKPSATPAHQPPAPLAELAQPVRAATWAHPIFSVDRQPDPQQQ-GQ 80 W LV P PA KP+ P QP + QP + P P PQ G+ Sbjct: 560 WSLVGAKAP---PAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGR 616 Query: 81 HSPALANLTL-TGVVLDGQSRW 101 A AN + TG V + W Sbjct: 617 ELSAAANAAVNTGGVGLASTLW 638
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 45.3 bits (107), Expect = 2e-08 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Query: 1 MKRQAGFTLLEILVVISLLGLLLGLVGSALVAANRSVAKAERYSARLD 48 +Q GFTLLEI+VVI ++G+L LV L+ + KA++ A D Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMG---NKEKADKQKAVSD 48
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 32.9 bits (75), Expect = 1e-04 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 1 MTGQRGFTLLEMLAAIALL-VVASSILLGAFAQSSRSLAQVERSDRHNAAARSLLDDFDL 59 QRGFTLLE++ I ++ V+AS ++ ++ Q SD A + LD + L Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDI--VALENALDMYKL 61
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 37.6 bits (87), Expect = 4e-06 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 13/93 (13%) Query: 7 REHGFTLFELLIVIVLVGVATS--ILAVGIGRGMLVAHERSALANMVSALRSARVQAIAS 64 R+ GFTL E++++++L+GV+ +LA R LA + LR + + + + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRD---DSAAQTLARFEAQLRFVQQRGLQT 58 Query: 65 GQP--VRASFD------LQRRQVQAPGRTPQGW 89 GQ V D L+ R P GW Sbjct: 59 GQFFGVSVHPDRWQFLVLEARDGADPAPADDGW 91
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 104 bits (262), Expect = 5e-32 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 10 RQAGFTLLEMLAVIVLLGIVATIVVRQVGGNVDKGKYGAGKAQLASLSMKVESYALDVGA 69 +Q GFTLLE++ VIV++G++A++VV + GN +K + + +L ++ Y LD Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHH 65 Query: 70 PPAN---LGQLLEKPANA---NRWAGPYAKPSDLVDPFGHGFAYHFPGSHASFDLIFLGQ 123 P L L+E P + DP+G+ + PG H ++DL+ G Sbjct: 66 YPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLSAGP 125 Query: 124 DGAVGGEGYKADVGNW 139 DG +G E D+ NW Sbjct: 126 DGEMGTED---DITNW 138
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 316 bits (812), Expect = e-107 Identities = 139/405 (34%), Positives = 211/405 (52%), Gaps = 9/405 (2%) Query: 1 MPTFSYTALDSEGRKQQGELDASDRDHAARQLQRRGLLILQLRQ--------GSRLLRSG 52 M + Y ALD++G+K +G +A A + L+ RGL+ L + + GS L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 53 KARSMFQPVELITITQQLTTLLSAGQPLDRALGTVLKNVRRPAAKAVLERVREQVKAGLP 112 + +L +T+QL TL++A PL+ AL V K +P ++ VR +V G Sbjct: 61 RKIR-LSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119 Query: 113 LSQALEEHPGSFSPFYTSLVRAGEAGGVLEVTLAQLAGYLEQSHKLRGEVINALIYPAFL 172 L+ A++ PGSF Y ++V AGE G L+ L +LA Y EQ ++R + A+IYP L Sbjct: 120 LADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVL 179 Query: 173 VIGVVGSLALLLAYVVPQFVPIFQDLGVPIPLVTRAVLAMGEFVNAWGLACLLTLLGAGW 232 + + +++LL+ VVP+ V F + +PL TR ++ M + V +G LL LL Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM 239 Query: 233 LGLAARRDPRRRVAQDLRLWRNRLFGPLLQRLETARLARTLGTLLSNSVTLLGSLAIGRE 292 R +RRV+ RL L G + + L TAR ARTL L +++V LL ++ I + Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299 Query: 293 VSANHALREHVERTTDQVKQGSSLSLALSAEALLPELALQMIEVGEQSGTLGAMLLKVAD 352 V +N R + TD V++G SL AL AL P + MI GE+SG L +ML + AD Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359 Query: 353 VYDLEAKRTIDRLLAALVPTLTIVMAVMVAAIMLAIMLPLMSLTS 397 D E + L P L + MA +V I+LAI+ P++ L + Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 34.3 bits (78), Expect = 0.002 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 22/131 (16%) Query: 421 VSNAGVKAEYFSNTSLSGAPVLTRIEPGVNLNWTTSTNETSTGTTAVSGFSPTAGAFSAR 480 S+ G+ YFS+ + V+T G + + ++E + F SA Sbjct: 43 SSSQGLLGYYFSDLNFQAPMVVTSSTTG---DLSIPSSELENIPSENQYFQ------SAI 93 Query: 481 FSATIKPTVSGAHVFKVRADGPYKLWVDGKLVVQSDGVPYSSDVVNALTTSGKSAALVAG 540 +S IK S + F AD +WVD + +V+N + S K L G Sbjct: 94 WSGFIKVKKSDEYTFATSADNHVTMWVDDQ------------EVINKASNSNK-IRLEKG 140 Query: 541 KSYNVKLEYRR 551 + Y +K++Y+R Sbjct: 141 RLYQIKIQYQR 151
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 96.2 bits (239), Expect = 9e-27 Identities = 34/185 (18%), Positives = 75/185 (40%), Gaps = 7/185 (3%) Query: 18 RRRAPKGEMRRAALLDAATAVFAKDGYAAASMRDVAEIAGITTVGLLHHFPNKVSLLQAL 77 R+ + + R +LD A +F++ G ++ S+ ++A+ AG+T + HF +K L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 78 LDRRDRRVTEKFAELEMAPTLANFLAFVRMSMNFSVQNLLECQA--SMMISVESLSEQHP 135 + + + E E A + L+ +R + +++ + + +M + E Sbjct: 63 WELSESNIGELELEY-QAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 136 AWP----WYKEKFALTHAHAKAHLAALVEHGEVRKDIDAKSLATEIFAVMDGLQIQWLRA 191 + ++ + L +E + D+ + A + + GL WL A Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 192 PDQVD 196 P D Sbjct: 182 PQSFD 186
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.7 bits (139), Expect = 1e-12 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 18 DRAMALFAEKGFGQVSMRELAAHLGVTAGSLYHHFPSKQDLLYDLIEELYEELQATLEPG 77 D A+ LF+++G S+ E+A GVT G++Y HF K DL ++ E + Sbjct: 18 DVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL-- 75 Query: 78 RRAMARGGSALACLIAA 94 G L+ L Sbjct: 76 EYQAKFPGDPLSVLREI 92
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.006 Identities = 21/177 (11%), Positives = 56/177 (31%), Gaps = 25/177 (14%) Query: 67 QALLQSLAERLASEAQATVAVDRARLERQQAAYQQQRAVEGARFEQLQVAHTAEMEAHRQ 126 + Q+++E + + + + Q+ + + A + Sbjct: 173 EPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA---ERLTVLARINRYENL 229 Query: 127 LRLREVQLTGQLQLAE---GERRRLEEACRQQLQLLEERATT---IHSLETKHQQARESL 180 R+ + +L L + + E + ++ + E + +E++ A+E Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 181 EHFRQQHQLQRQEELQRHDQQLSQLQTE----------------VRGLREQLAVRQE 221 + Q + + ++L++ + L E V +QL V E Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTE 346 Score = 29.4 bits (66), Expect = 0.019 Identities = 16/151 (10%), Positives = 50/151 (33%), Gaps = 13/151 (8%) Query: 157 QLLEERATTIHSLETKHQQARESLEHFRQQHQLQRQEELQRHDQQLSQLQTEVRGLREQL 216 + EE + SL + ++ ++ ++ + +++ E ++++ + R + +L Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 217 AVRQEELTQLYRDLERSTGAQGY-QQQQLRQLERELNAAQQHLAAEKLLMNQAHQQAEIM 275 + + L + + + + E + A L K + Q + Sbjct: 238 D----DFSSLL--------HKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSA 285 Query: 276 ASEITLLREKSRSYLLAHRHDQRLLRAQAQQ 306 E L+ + ++ +L Sbjct: 286 KEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.0 bits (65), Expect = 0.047 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 10/68 (14%) Query: 183 PMIIKPAPETPLSALALARLAEEAGLPAGVFQVVTGDAPKLSKQLLQHTEV-RAFSFTGS 241 P++ T + ++AEE G+P ++ L++ L V Sbjct: 281 PLVT--FKYTDAQVQTVRKIAEEEGVP-----IL--QRIPLARALYWDALVDHYIPAEQI 331 Query: 242 TEVGRILL 249 +L Sbjct: 332 EATAEVLR 339
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.4 bits (245), Expect = 4e-26 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 4/155 (2%) Query: 1 MKNTCIYMVDDDHDLCEAVVGLLRSVDLAVKTFASPNEFLQFPRPEVPSCLILDVRLKGA 60 M I + DDD + + L V+ ++ ++ ++ DV + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLDFQARMDDLRVNIPVIMMTAYGDIPMSVRAMKAGALGFLTKPFRDQDLLDAVVEALE 120 + D R+ R ++PV++M+A +++A + GA +L KPF +L+ + AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 HDRQRRVSEEGIIELRERHNRL--STREQEVMAMA 153 ++R E + ++ + S QE+ + Sbjct: 121 EPKRRPSKLED--DSQDGMPLVGRSAAMQEIYRVL 153
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 9e-23 Identities = 32/125 (25%), Positives = 56/125 (44%) Query: 1 MSPYHICIVDDDESVRMALDGLVRSMGHCADTFGSATEFLASQALHTCDCLILDVQMPGL 60 M+ I + DDD ++R L+ + G+ +A A D ++ DV MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGLELQQQLLTLGVCLPLIFITAFPEARWREQALAAGALEFLGKPFDGRTLVSLIERAGR 120 + +L ++ LP++ ++A +A GA ++L KPFD L+ +I RA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 LGRGR 125 + R Sbjct: 121 EPKRR 125
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.003 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 6 PPIAAQGVATLPDEAWAQARHRTEIIGPLAALEVVGHEAADEAAQALGLSRRQVYVLIRR 65 A+ G A P + + E LAAL +AA LGL+R + IR Sbjct: 414 QYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQI-KAADLLGLNRNTLRKKIRE 472
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 30.7 bits (69), Expect = 0.012 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 18/157 (11%) Query: 40 GTGFVASPDGLVLSAGHNIPDKSLFDEDGFFIEGYFPAKDQDALSAVDPPVELEVITATQ 99 +G V D +L+ H + D ++ + A +QD + + E IT Sbjct: 104 ASGVVVGKD-TLLTNKHVVDATH---GDPHALKAFPSAINQD--NYPNGGFTAEQITKYS 157 Query: 100 SPYDVSLLRIKN-------SDTVRPFLRLCDNYKRAGNFDFVVLGYQGGDRILT--SNYG 150 D+++++ + V+P + + V GY G + T + G Sbjct: 158 GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQN-ITVTGYPGDKPVATMWESKG 216 Query: 151 PVMAGAGATSSILVQIPLNKGNSGGPIFNELGMVFGI 187 + G ++ + GNSG P+FNE V GI Sbjct: 217 KITYLKG--EAMQYDLSTTGGNSGSPVFNEKNEVIGI 251
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1067 bits (2761), Expect = 0.0 Identities = 408/567 (71%), Positives = 477/567 (84%), Gaps = 2/567 (0%) Query: 3 RISRRAYADMFGPTVGDRVRLADTALWVEVEKDFTVYGEEVKFGGGKVIRDGMGQGQML- 61 R+SR AYA+MFGPTVGD+VRLADT L++EVEKDFT +GEEVKFGGGKVIRDGMGQ Q+ Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 AAQAMDLVLTNALIIDHWGIVKADIGVKHGRIAAIGKAGNPDVQPGVTVPVGPGTEVIAA 121 A+D V+TNALI+DHWGIVKADIG+K GRIAAIGKAGNPD+QPGVT+ VGPGTEVIA Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAG 123 Query: 122 EGKIVTAGGIDSHIHFICPQQVEEALTSGVTTFIGGGTGPATGTNATTCTPGPWYLARML 181 EGKIVTAGG+DSHIHFICPQQ+EEAL SG+T +GGGTGPA GT ATTCTPGPW++ARM+ Sbjct: 124 EGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIARMI 183 Query: 182 QAADSLPINIGLLGKGNASRPEALREQIAAGAVGLKLHEDWGSTPAAIDCCLSVAEEMDI 241 +AAD+ P+N+ GKGNAS P AL E + GA LKLHEDWG+TPAAIDCCLSVA+E D+ Sbjct: 184 EAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEYDV 243 Query: 242 QVAIHTDTLNESGCIEDTLAAIGDRTIHTFHTEGAGGGHAPDIIRAAGQANVLPSSTNPT 301 QV IHTDTLNESG +EDT+AAI RTIH +HTEGAGGGHAPDIIR GQ NV+PSSTNPT Sbjct: 244 QVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTNPT 303 Query: 302 LPYTVNTVDEHLDMLMVCHHLDPSIAEDVAFAESRIRRETIAAEDILHDMGAFAMTSSDS 361 PYTVNT+ EHLDMLMVCHHL P+I ED+AFAESRIR+ETIAAEDILHD+GAF++ SSDS Sbjct: 304 RPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISSDS 363 Query: 362 QAMGRVGEVVLRTWQVAHQMKVRRGPLAPDSSYSDNFRVKRYIAKYTLNPALTHGIAHEV 421 QAMGRVGEV +RTWQ A +MK +RG L ++ +DNFRVKRYIAKYT+NPA+ HG++HE+ Sbjct: 364 QAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSHEI 423 Query: 422 GSVEVGKLADLVLWSPAFFAVKPALVIKGGMIVTAPMGDINGSIPTPQPVHYRPMFGALG 481 GS+EVGK ADLVLW+PAFF VKP +V+ GG I APMGD N SIPTPQPVHYRPMFGA G Sbjct: 424 GSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGAYG 483 Query: 482 AARHATRMTFLPQAAMDRGLAQELGLQSLIGVAHGCR-RVRKADMVHNTLQPVIEVDSQT 540 +R + +TF+ QA++D GLA LG+ + R + KA M+HN+L P IEVD +T Sbjct: 484 RSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDPET 543 Query: 541 YQVRADGELLVCEPASELPLAQRYFLF 567 Y+VRADGELL CEPA+ LP+AQRYFLF Sbjct: 544 YEVRADGELLTCEPATVLPMAQRYFLF 570
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.012 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 22/184 (11%) Query: 21 LQAFRQ---LLREHDGRELTQAQFDAQISGRANGPLFAELFPKAGAHECLALADRKEALF 77 LQA +Q ++R+ A+ + + A G ++ GA + AL + +EA+ Sbjct: 11 LQALKQNLSIVRQAAT----HARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEAI- 65 Query: 78 RELAPALEPMPGLLRLLDYAQAVCIEMCVVTN-APRLNAEHMLNAMGLGAHFEHVLVAEE 136 L P L+ L + A +E+ +++ L A L Sbjct: 66 -TLRERGWKGPILM-LEGFFHAQDLEIYDQHRLTTCVHSNWQLKA----------LQNAR 113 Query: 137 LERPKPDPLPYLTGLQRLGATAEQALAFEDSLPGVKAASGAGIFTVGVATTQTAERLMAA 196 L+ P L +G+ RLG ++ L L + + + A + + + A Sbjct: 114 LKAPLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMS-HFAEAEHPDGISGA 172 Query: 197 GARL 200 AR+ Sbjct: 173 MARI 176
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 36.8 bits (85), Expect = 1e-05 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 73 STWLGRNGIYLEDLYITPEQRGGGAGRDLLRHIARE-AVENRCGRLEWSVLDWNEPAIGF 131 S W G +ED+ + + R G G LL H A E A EN L D N A F Sbjct: 84 SNWNGY--ALIEDIAVAKDYRKKGVGTALL-HKAIEWAKENHFCGLMLETQDINISACHF 140 Query: 132 YKSLG 136 Y Sbjct: 141 YAKHH 145
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 33.7 bits (77), Expect = 0.008 Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 35/204 (17%) Query: 1332 GVKWLQNGTGYGSSSNSGWKASQMIGISEQLGFLAPVSMISSSAATNGDYLYSLDAALEG 1391 G++W G +NSG S I + Q + ++ SS A+ + + G Sbjct: 365 GIQWANKNAGMTQFTNSGLPISTAIAGANQ--YNKDGTVSSSLASALSSF----NGIAAG 418 Query: 1392 YWNGIWGVMRNY--TTQRADLFALPNNPQPVAMRN---TINFDGICPRTTANPSGVGSRP 1446 ++ G W ++ ++ + D+ A P V + N T N P T + + G Sbjct: 419 FYQGNWAMLLTALSSSTKNDILA---TPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNI 475 Query: 1447 TVKRNYEIVAALANDILE-----NRNGVSINDPAGIGQHVGGPLKANGGT-----LVFNS 1496 + V L+ N + + I Q V A T FN+ Sbjct: 476 FNTVERKTVGIK----LKVKPQINEGDSVLLE---IEQEVSSVADAASSTSSDLGATFNT 528 Query: 1497 RTTSIPQVTVTDEEDGTTFTVGGH 1520 RT + G T VGG Sbjct: 529 RTVN----NAVLVGSGETVVVGGL 548
>PF07472#Fucose-binding lectin II Length = 245 Score = 30.0 bits (67), Expect = 0.006 Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 29 VAMAHEDHAPSSPSPQPAPPTMASGGGTRD 58 V + ++P P+P P +GGG RD Sbjct: 104 VGAVVNYFSKATPQPEPTQPGTTTGGGERD 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.2 bits (177), Expect = 2e-17 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 10/144 (6%) Query: 3 RVLVVDDEQTLAQNLQAYLQAQGLEVHVAHDGASGIGLAECLAPDVIVLDYRLPDMEGFQ 62 +LV DD+ + L L G +V + + A+ D++V D +PD F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VLETVRKNR-QCHFVLITAHPTAEVRERAAELGVTHVLFKPFPLSELARPIFDLMGIERR 121 +L ++K R ++++A T +A+E G L KPF L+E I Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTE---------LIGII 115 Query: 122 RRATDNPAEGFVERRQNRNESFPL 145 RA P + + + PL Sbjct: 116 GRALAEPKRRPSKLEDDSQDGMPL 139
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.5 bits (105), Expect = 5e-07 Identities = 62/370 (16%), Positives = 130/370 (35%), Gaps = 43/370 (11%) Query: 44 IAPDLGLSAERASLIVSLTQLGYALGLLLLVPLADLLENRRLMIFTAVLACASLVLAGTS 103 IA D + + + L +++G + L+D L +RL++F ++ C V+ Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 104 SHGQGLLFLGYALLIGFSSVAVQMLIPLAAHLAPEQQRGRVVGNIMGGLLLGILLARPVS 163 LL + + ++ +++ + A P++ RG+ G I + +G + + Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIG 159 Query: 164 SLVADHFGWRMVFIGAASLMLAIILLLVLTLP-RRVPDH--------------------- 201 ++A + W + + ++ + L+ L R+ H Sbjct: 160 GMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTT 219 Query: 202 KASYAALMVSLIALLRQYPVLRQRS------------------LYQALMFGAFSLYWTAV 243 S + L+VS+++ L +R+ + L ++FG + + + V Sbjct: 220 SYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMV 279 Query: 244 PLVLAQEHGLSQSQI-ALFALVGAV-GAIAAPLAGRLADAGHARAASLLALVLAPVALL- 300 P ++ H LS ++I ++ G + I + G L D + + V+ L Sbjct: 280 PYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLT 339 Query: 301 LGLTAPGFSVIGLATTGVLLDFAVQMNMVIGQREVYALDPASRGRLNALYMTSIFLGGAL 360 S +L VI +L G +L + FL Sbjct: 340 ASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGT 399 Query: 361 GSAAASAVFS 370 G A + S Sbjct: 400 GIAIVGGLLS 409
>PF03309#Bvg accessory factor Length = 271 Score = 28.6 bits (64), Expect = 0.032 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 111 LVAID----NAVFLLAACGLLEGHRVVVHWRHETEFRATFPHLQVLREQLYCIDGARITC 166 L+AID + V L + G + +VV WR TE T L + + L D R+T Sbjct: 2 LLAIDVRNTHTVVGLIS-GSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGDDAERLTG 60 Query: 167 AGGTAAIDLAVALLSEACGR 186 A G + + + + + Sbjct: 61 ASGLSTVPSVLHEVRVMLEQ 80
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.018 Identities = 66/313 (21%), Positives = 112/313 (35%), Gaps = 28/313 (8%) Query: 13 LLGLFIIALGNGF-MSSLTTL--RLGAAGESATMIGIVSSSYFLGLTLGAIFNDRLILRI 69 L + + A+G G M L L L + + GI+ + Y L A L R Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRF 70 Query: 70 GHIRAYSSFAALIAATILLQGLFYDTTWWS--ILRLINGWAAVGVFLVIESWLLLAGDAK 127 G R +L A + + W I R++ G V +++ D Sbjct: 71 G--RRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITG-ATGAVAGAYIADITDGD 127 Query: 128 IRGRLLALYMIAFYGAGVIAQAGLGE-ITHLGDSAPFMLAGMLAALS-VLPIVILPRVSP 185 R R +M A +G G++A LG + APF A L L+ + +LP Sbjct: 128 ERARHFG-FMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHK 186 Query: 186 LLDQVEPLKPRQLLGVAPSGLVGCFGSGVAIAGIYALLPLYLQ------------RIGLD 233 + PL+ L +A A+ ++ ++ L Q R D Sbjct: 187 GERR--PLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 234 VGEVGNMMAWV-ILGAMLLQYPVGRWSDR-KDRQDVLIALAALCVVLSLITVFLPSQSSL 291 +G +A IL ++ G + R +R+ +++ + A L+ F Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL-AFATRGWMA 303 Query: 292 LPVMLFLLGGGVF 304 P+M+ L GG+ Sbjct: 304 FPIMVLLASGGIG 316
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 112 bits (282), Expect = 1e-29 Identities = 61/416 (14%), Positives = 132/416 (31%), Gaps = 87/416 (20%) Query: 33 RRVRILSSVMFACVALAGILLVLYAWRLPPFGSAIESTENAMVRGQVTIIGPQLSGYVVD 92 RR R+++ + + +A + + L + G+ I P + V + Sbjct: 55 RRPRLVAYFIMGFLVIA----FILSV-LGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 93 VPVHDFQFVKAGDLLVQLDDR-----IYKQRLAQAIAQLQQE------------------ 129 + V + + V+ GD+L++L K + + A+L+Q Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 130 ----------------------QAALANNLQQRNSAEATIAQRQAAIGDAKAQAEKARA- 166 + + Q+ E + +++A A+ + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENL 229 Query: 167 ------DLSRNQALVSDGSVSR--------------RDLDVTRASQAAAVATLAQAKAAL 206 L +L+ ++++ +L V ++ + + AK Sbjct: 230 SRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY 289 Query: 207 AIARQD-RETVIVNRAALEASVENAKAAVELARIDLDNTRVTAPRDGQLGQIGTR-LGAY 264 + Q + ++ ++ + + + AP ++ Q+ G Sbjct: 290 QLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV 349 Query: 265 VNSGAQLMALVP--DTVWVIANMKETQMADVRIGQPVTFTVDALN---HLKLRGHVQQIS 319 V + LM +VP DT+ V A ++ + + +GQ V+A + L G V+ I+ Sbjct: 350 VTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Query: 320 PATGSEFALLQADNATGNFVKIAQRIPVRITVDADQPAARRLSPGMSVVVSIDTRD 375 D G + I ++ LS GM+V I T Sbjct: 410 LDA-------IEDQRLGLVFNVIISIEENCLSTGNKN--IPLSSGMAVTAEIKTGM 456
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.002 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 19/161 (11%) Query: 167 LQNPKAMQTALNEGKINAEIFQRSVVLSDTEHLQAKAVEIAASLQACQRLQATTDRLFGT 226 QN + + A + K N + + + S+T+ Q + A+++ ++ + T++ Sbjct: 1063 AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT--Q 1120 Query: 227 EAPSFASLADMLSRASQLAEKLLKDRGIELHPVAAEPE-PAVTLSAASEPGEPMNTPVQA 285 E P SQ++ K + ++ AEP EP NT Sbjct: 1121 EVPK---------VTSQVSPKQEQSETVQ---PQAEPARENDPTVNIKEPQSQTNTTADT 1168 Query: 286 AAPA----PMRTTPLTRDEAFTMLAGIAQFFKQTEPQSPVP 322 PA P+T + + + T P + P Sbjct: 1169 EQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 117 bits (295), Expect = 9e-31 Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 6/127 (4%) Query: 706 ETITLESDTLFAFARADFQSLKSEGQNQLSAIASKLLNT-PNIGKIIISGHADQLGDAQG 764 + TL+SD LF F +A LK EGQ L + S+L N P G +++ G+ D++G Sbjct: 213 KHFTLKSDVLFNFNKAT---LKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAY 269 Query: 765 NLQVSRQRAQTIRTYLVGKGVPAELVSAQGEGSRKPLVN--CDMQQPRAQLIKCLEPNRR 822 N +S +RAQ++ YL+ KG+PA+ +SA+G G P+ CD + RA LI CL P+RR Sbjct: 270 NQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRR 329 Query: 823 VEIEVRG 829 VEIEV+G Sbjct: 330 VEIEVKG 336
>cdtoxina#Cytolethal distending toxin A signature. Length = 258 Score = 27.0 bits (59), Expect = 0.037 Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 18/124 (14%) Query: 12 PPATPNEAGAGKQWPMIDGMFFPSDYVEFINVYGSGRIADFLIVFNPFSQNEDINFFDQF 71 N G + W ++ G + ++F NV + F F Sbjct: 105 YIGDSNSFGELRNWQIMPGTR--PNTIQFRNV----------------DVGTCMTSFPGF 146 Query: 72 RLVLGSFNDLVASDSEYFKYPLYPVENGLIPVGVTDNGDCIFWVVTSKQNSDEWHVAIIA 131 + + E F + NG + G CI + S + + Sbjct: 147 KGGVQLSTAPCKFGPERFDFQPMATRNGNYQLKSLSTGLCIRANFLGRTPSSPYATTLTM 206 Query: 132 SRSP 135 R P Sbjct: 207 ERCP 210
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 7e-04 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 18/132 (13%) Query: 40 RQFFPSDDEYASLLMALATFGVGFFMRPVGGVLLGIYSDRKGRKAAMQLIIRLMTVSIAM 99 R S+D A + LA + M+ +LG SDR GR+ + + + V A+ Sbjct: 33 RDLVHSNDVTAHYGILLALYA---LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAI 89 Query: 100 IAFAPSYLAIGMGAPLLIVVARMLQGFATGGEYASATAFLVESAPAHRKGLYGSWQLVGQ 159 +A AP + +G R++ G TG A A A++ + + + + + Sbjct: 90 MATAPFLWVLYIG--------RIVAGI-TGATGAVAGAYIADITDGDERARHFGF--MSA 138 Query: 160 CLAVFSGAGMVA 171 C G GMVA Sbjct: 139 CF----GFGMVA 146 Score = 33.6 bits (77), Expect = 0.001 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 285 LMTVVIPLAGALSDRLGRRPVLMA----FTLAFFVMVYPLYVWV 324 + P+ GALSDR GRRPVL+ + + +M ++WV Sbjct: 55 MQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWV 98
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 66/370 (17%), Positives = 125/370 (33%), Gaps = 28/370 (7%) Query: 64 AAYGLAASMFFIGYVLFEVPSSLGLKRYGAPAWICRIMVSWGLATAALVFAYTHYTLYFL 123 A YG+ +++ + R+G + + + A + A + LY Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 124 RFLIGVMEAGFGPAILFYLACWFPRKHLAKMNGLWFLAVPLAGAVGGPAAGFLLGTMDGV 183 R ++ + G Y+A A+ G + A G V GP G G+ Sbjct: 103 R-IVAGITGATGAVAGAYIADITDGDERARHFG-FMSACFGFGMVAGPVLG-------GL 153 Query: 184 LGLAGWHWLFLMSGLPCVVLGVLVLCKLDRDIASAKWLTLEEKALLQENLAQDKRADKPV 243 +G H F + + + L E + + + A P+ Sbjct: 154 MGGFSPHAPFFAAAALNGLNFLTGC------------FLLPESHKGERRPLR-REALNPL 200 Query: 244 LGSLWRVLLTREVAIMAFIYYVIKS-ASYGLNFWMPHLIKSSGVQDMLWVGVLSALPYAV 302 W + VA + ++++++ W+ L+A Sbjct: 201 ASFRWARGM-TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILH 259 Query: 303 ACVGMVLLTRRSDRTGERKRYLVYCLLAAAVGYLLACLFSGSSWAMMAALVLATAGTFIA 362 + ++ + R GER R L+ ++A GY+L F+ W +VL A I Sbjct: 260 SLAQAMITGPVAARLGER-RALMLGMIADGTGYILL-AFATRGWMAFPIMVL-LASGGIG 316 Query: 363 IPIFWTIPQSTFSGLAIATGTAAINSVGQLSGIVAPVMVGQINDITGSTYMGMLSIAPLI 422 +P + ++ ++ L+ IV P++ I + +T+ G IA Sbjct: 317 MPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAA 376 Query: 423 L-LACLVVMR 431 L L CL +R Sbjct: 377 LYLLCLPALR 386
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 35.4 bits (81), Expect = 2e-04 Identities = 8/56 (14%), Positives = 19/56 (33%) Query: 10 ERVTISEVARVAGVSKATVSRYIGGDRQLLAEATAKRLEEVIERLGYRPNQMARGL 65 ++ E+A+ AGV++ + + L +E + E + Sbjct: 30 SSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDP 85
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 53.3 bits (128), Expect = 6e-10 Identities = 63/320 (19%), Positives = 110/320 (34%), Gaps = 16/320 (5%) Query: 55 GQAISISGFFAVVTSLMLASMTQGIDRKPVLLATTALMLISGGMVAFAPNYLTLMVGRAV 114 G +++ + +L +++ R+PVLL + A + ++A AP L +GR V Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIV 105 Query: 115 LGIAIGGYWSMSTAVMMRIAPERLVPKAIAVMQGGTALATAIAAPVGSYLGGMIGWRGAF 174 GI G +++ A + I + M +G +GG F Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPF 163 Query: 175 FCVLPLAALALMWQAFTLP------AMPSERKAASATGSLRLLADSRVALGMAAVAFL-- 226 F L L + F LP P R+A + S R V + AV F+ Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 227 FMGQFTLFTYLRPFLETVTHVDVPTLSLLLLVIGAAGLVGTMVVGTLVGRYLNR---VLL 283 +GQ ++ F E H D T+ + L G + ++ V L ++L Sbjct: 224 LVGQVPAALWVI-FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML 282 Query: 284 GVPLIMTAIAFAVIMVGSWVVPVAVLLGIWGLVSTCAPVGWFTWLAKALPHQAEAGGGLM 343 G+ T W+ ++L G + A + + G + Sbjct: 283 GMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDE--ERQGQLQGSL 340 Query: 344 VAVIQLAITAGATVGGVLYD 363 A+ L G + +Y Sbjct: 341 AALTSLTSIVGPLLFTAIYA 360
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 70.5 bits (172), Expect = 8e-16 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 1/174 (0%) Query: 123 LRGKVVVITGASSGIGRAAAHAFACKGARLVLAARDEQALFDVLDECTDCGTDAVAIITD 182 + GK+ ITGA+ GIG A A A +GA + + + L V+ A A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 183 VTRSDQVQALATQAAEFGHGRIDIWVNNAGVGAVGNFEQTPLEAHEQVIQTDLIGYLRGA 242 V S + + + G IDI VN AGV G E E + G + Sbjct: 66 VRDSAAIDEITARIER-EMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 243 HVALPYFKAQRSGILINTLSLGSWVAQPYAAAYSASKFGLRGLTEALRGELTEF 296 Y +RSG ++ S + V + AAY++SK T+ L EL E+ Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 101 bits (253), Expect = 4e-28 Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 14/258 (5%) Query: 4 GLQGKRVLVSGASRGIGRAIVKLFLEEGAQVA---FCARGQTGVQSAQLEFGERAWGTAV 60 G++GK ++GA++GIG A+ + +GA +A + V S+ A Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 61 DVTQPEHVRAWVNEAAQHMGGLDIVVPNVSALAGG--DDL--ETWRRAFDTDLLGSATMV 116 DV + + MG +DI+V L G L E W F + G Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 117 KAALPALRQSQAAAVVLISSVSGREVDMFAEPYGVLKAALLHYGKTLSVRHAHEGIRVNS 176 ++ + ++ ++V + S Y KAA + + K L + A IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 177 VSPGNVY--FPEGVWGDIEREQPDTFAKSLAEN----PMGRMATPEEVAKAVVFLASPAA 230 VSPG+ +W D E SL P+ ++A P ++A AV+FL S A Sbjct: 185 VSPGSTETDMQWSLWAD-ENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243 Query: 231 SFTTGTNLLVDGGLTRSV 248 T NL VDGG T V Sbjct: 244 GHITMHNLCVDGGATLGV 261
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.1 bits (112), Expect = 7e-08 Identities = 63/283 (22%), Positives = 108/283 (38%), Gaps = 22/283 (7%) Query: 64 IATLICLPLFGWLASKVRRRHILPWTYGFFASNLLLFALLFASKPDDLWNARAFYIWLSV 123 + C P+ G L+ + RR +L + A + + A A L+ R ++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA--TAPFLWVLYIGRI----VAG 107 Query: 124 FNLLTISLAWSVLTDLFSTEQGKRLFGLLAAGASLGGLSGPVLGTLLVAPLGHAGLVSLA 183 T ++A + + D+ ++ R FG ++A G ++GPVLG L+ HA + A Sbjct: 108 ITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAA 167 Query: 184 ALFLLGSIAAAGYLQRWRDCQPMPTLSEQPASRPLGGNPFAG---ATALMRSPYLLGIAL 240 AL L + L P E+ R NP A A + L+ + Sbjct: 168 ALNGLNFLTGCFLL-------PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFF 220 Query: 241 FVVLLASVSTFLYFEQARIVSETFTDRTRQTQVFGLIDTVVQALAILTQVFITGRLAKRM 300 + L+ V L+ + F G+ L L Q ITG +A R+ Sbjct: 221 IMQLVGQVPAALW---VIFGEDRF---HWDATTIGISLAAFGILHSLAQAMITGPVAARL 274 Query: 301 GVGVLLVAVPLVMAAGFLWLAMAPVFAVFVVVMVVRRAGEYAL 343 G L+ + G++ LA A + +MV+ +G + Sbjct: 275 GERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM 317
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 27.5 bits (61), Expect = 0.039 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 126 ILIFTAFLPQFVSV----GSPTPVSEQFLWLGVLFLLLEWAA-IAIYAGLGAYLQRWFSQ 180 ++ + +P+ V P+S + L +G+ + + + + G R + Sbjct: 188 SILLSVVVPKVVEQFIHMKQALPLSTRVL-MGMSDAVRTFGPWMLLALLAGFMAFRVMLR 246 Query: 181 PGPRRLFNRVSACLLGCAGLGLLAAR 206 RR+ LL +G +A Sbjct: 247 QEKRRV--SFHRRLLHLPLIGRIARG 270
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 131 bits (331), Expect = 2e-39 Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 14/256 (5%) Query: 11 VAGKVVLVTGAASGIGKAIAELLHARGAKVIAEDIDPAVNVLERPGLVP-------FVAD 63 + GK+ +TGAA GIG+A+A L ++GA + A D +P L F AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 64 ITVDGSAEQAVALAVEKFGKLDVLVNNAGRILYKPLVEMTREDWEWQMQTNVTGAFLHSR 123 + + ++ A + G +D+LVN AG + + ++ E+WE N TG F SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 EAMKEMMKNKSGAIVNIASYASYFAFPGIAAYTASKGALAQLTRTQALEAIEHGIRVNAI 183 K MM +SG+IV + S + +AAY +SK A T+ LE E+ IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 184 GVGDVVTNLLNHFM--EDG-----RGFLQEHGKSAPIGRAAAPQEIAEIVSFLASERASF 236 G T++ E+G +G L+ P+ + A P +IA+ V FL S +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 237 IVGSVVMADGGMSVPV 252 I + DGG ++ V Sbjct: 246 ITMHNLCVDGGATLGV 261
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.0 bits (233), Expect = 3e-25 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 8/231 (3%) Query: 3 GIQQKVIVITGASSGIGEATARLLASKGARVVLGARRTDRLEALAKEIRSAGGTADVKGL 62 GI+ K+ ITGA+ GIGEA AR LAS+GA + ++LE + +++ A+ Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVTNLDDMQSFIDFTVELHGRVDVLVNNAGVMPLSKLEALKVDEWNRMIDVNIRGVLHGI 122 DV + + G +D+LVN AGV+ + +L +EW VN GV + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 ATTLPLMQQQHAGQIINIASIGAYAVSPTAAVYCATKYAVRAISEGLRQEVGG-DIRVTV 181 + M + +G I+ + S A + A Y ++K A ++ L E+ +IR + Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 IAPGVTESELAESI--SDDGGRAEMREFR---KIAIPASAIARA--IAYAV 225 ++PG TE+++ S+ ++G ++ K IP +A+ IA AV Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.044 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 12/113 (10%) Query: 3 GYSPYSKSRPNLKPYQLIAGVLIVLWLS----FIWIIQLKAQETGMVLRDMKPVMAW--- 55 Y + K + LK + +L VL +W + + + + KPV Sbjct: 58 AYRSFIKRQGWLK-LNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPL 116 Query: 56 GIAAIVGPLLMIF----GTHWWGNALASEKAELANYRKQVEAKKAEQQATQAR 104 ++ I +++ F W ++AE+ ++ A++A+ A +A+ Sbjct: 117 ALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQ 169
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 28.7 bits (64), Expect = 0.020 Identities = 14/32 (43%), Positives = 20/32 (62%) Query: 217 LRGHSTRSLAERLGISEDTVKTHRKNLYTKLD 248 + G +TR LA++LGI + T+ H KN LD Sbjct: 22 IDGLTTRKLAQKLGIEQPTLYWHVKNKRALLD 53
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 52.2 bits (125), Expect = 4e-10 Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 35/229 (15%) Query: 3 NKVMVGLIDSGCTAAQ---ARALHGARRFWLEEGMLREGALQPDRLGHGSAVLASLQAE- 58 V V ++D+GC A + G R F ++ + + D GHG+ V ++ A Sbjct: 41 RGVKVAVLDTGCDADHPDLKARIIGGRNFTDDDEG--DPEIFKDYNGHGTHVAGTIAATE 98 Query: 59 --------AGRVPLLLAQVFSEQGSTSALQVAAALLWLAEQGATLINLSLGLQQDRAVLR 110 A LL+ +V ++QGS + + + EQ +I++SLG +D L Sbjct: 99 NENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQKVDIISMSLGGPEDVPELH 158 Query: 111 QACAEVQAAGLLLCASSPAQGAAV-------YPASYP--MVVRITGDARCAPGQWSWLGS 161 +A + A+ +L+ ++ +G YP Y + V R A + Sbjct: 159 EAVKKAVASQILVMCAAGNEGDGDDRTDELGYPGCYNEVISVGAINFDRHASEFSNSNNE 218 Query: 162 AQA----------DFGGHVGEPGMAGASLGCAAVTGRIAALMQQQPDLD 200 GG +G S+ V G +A + Q Sbjct: 219 VDLVAPGEDILSTVPGGKYAT--FSGTSMATPHVAGALALIKQLANASF 265
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 316 bits (811), Expect = e-103 Identities = 130/369 (35%), Positives = 181/369 (49%), Gaps = 52/369 (14%) Query: 309 RALQLPRHSHLNGASAPGKPAQANKSPALEALAGGDARLARNLRMARQGLGNGLPVLLLG 368 RAL P+ L G A + R+ + + L +++ G Sbjct: 117 RALAEPKRRPSKLEDDSQDGM---------PLVGRSAAMQEIYRVLARLMQTDLTLMITG 167 Query: 369 ETGTGKEVVARALHQASPRADKAFVAVNCAAIPEGLIESELFGYRDGAFTGSRRGGMVGR 428 E+GTGKE+VARALH R + FVA+N AAIP LIESELFG+ GAFTG++ GR Sbjct: 168 ESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRST-GR 226 Query: 429 LMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQEIDVALICATHRDLKRL 488 QA GGTLFLDEIGDMP+ Q RLLRVLQ+ +G DV ++ AT++DLK+ Sbjct: 227 FEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286 Query: 489 VQDQHCREDLYYRVNGVSLRLPALRER-DDLALIIEGLLEKA---GAKAVSLDPALAALL 544 + REDLYYR+N V LRLP LR+R +D+ ++ +++A G D L+ Sbjct: 287 INQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELM 346 Query: 545 AAFDWPGNIRQLEMVVRTALAMREDGEQVLTLDHLTDCLLDELASGSAPSGN-------- 596 A WPGN+R+LE +VR A+ V+T + + + L E+ Sbjct: 347 KAHPWPGNVRELENLVRRLTALYPQD--VITREIIENELRSEIPDSPIEKAAARSGSLSI 404 Query: 597 ----------------------------LKDTELELIRNALARHHGNVSAAAEALGISRA 628 L + E LI AL GN AA+ LG++R Sbjct: 405 SQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRN 464 Query: 629 TLYRKLKQL 637 TL +K+++L Sbjct: 465 TLRKKIREL 473
>INTIMIN#Intimin signature. Length = 939 Score = 30.0 bits (67), Expect = 0.020 Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 11/144 (7%) Query: 299 ATVTLTSQTPNLSLTEANSTGAWYAQSVLNPLLPASLTLTADNSVAIPTSSLATVNLPLT 358 ATVTL S P + A + A + + + A T+++A +T Sbjct: 620 ATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAIT 679 Query: 359 DLVTITRAEFSLASGQLTL-----------VASTSDETSPPVLTAHTGNGALIGDLAGSG 407 V + + + +++ ++T + ++ + LT+ T +L+ Sbjct: 680 YTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDV 739 Query: 408 AVKTLSTSLSPIPPAKVQVTSANG 431 AV + + + + Sbjct: 740 AVDVKAPEVEFFTTLTIDDGNIEI 763
>INTIMIN#Intimin signature. Length = 939 Score = 37.0 bits (85), Expect = 3e-04 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 11/137 (8%) Query: 611 PPATVTTAFTTTFTFQVRDSLGALSNPGTVTVNVSPRPAAETFAVTAATVTARSNNRFNW 670 P + T + D G SN +T+ V V VT + ++ + Sbjct: 515 PAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQ----VVDQVGVTDFTADKTSA 570 Query: 671 DISGTSSVTTGNTVTVRVTTTTGEQVLGTV----AVPITGRWRL-AVGNSTTMIPTAAPT 725 GT ++T TV V + AV G +T + + P Sbjct: 571 KADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPG 630 Query: 726 ATVTS--SQGTTRTVNV 740 V S + T +N Sbjct: 631 QVVVSAKTAEMTSALNA 647 Score = 34.3 bits (78), Expect = 0.002 Identities = 38/210 (18%), Positives = 64/210 (30%), Gaps = 28/210 (13%) Query: 509 TSVTYTPPADATQPLVATFSYQAVDAKGLKSTPATVTVNVAPNQPPTVAAQTVATLGVPL 568 T + Q V F+ AK + T T TV VA VP+ Sbjct: 545 TITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTA--------TVKKNGVAQANVPV 596 Query: 569 SINVLAGAADPEGNAPLVVDNVTQPAAGRGAVSTDGSTVTYTPPATVTTAFTTTFTFQVR 628 S N+++G A N+ N + A G V A +T+A V Sbjct: 597 SFNIVSGTAVLSANS--ANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVD 654 Query: 629 DSLGALSN----------PGTVTVNVSPRPAAETFAVTAATVTARSNNRFNWDIS--GTS 676 + +++ G + + + V+ VT F + S Sbjct: 655 QTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVT------FTTTLGKLSNS 708 Query: 677 SVTTGNTVTVRVTTTTGEQVLGTVAVPITG 706 + T +VT T+ V+ ++ Sbjct: 709 TEKTDTNGYAKVTLTSTTPGKSLVSARVSD 738
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.2 bits (177), Expect = 6e-17 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 14/167 (8%) Query: 2 KLLIVEDNCDIHDNLVDFFELRGHAVEGARDGLTGLHLAETGCFDAIILDIMLPGIDGNE 61 +L+ +D+ I L G+ V + T G D ++ D+++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 -ICHLLRMRSKSPAAIIMLTARDELDDRLMGFKAGADDYVVKPFAMAEILARLEAILYRR 120 + + + R P +++++A++ + + GA DY+ KPF + E++ + Sbjct: 65 LLPRIKKARPDLP--VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG------ 116 Query: 121 TGHNGRKLHLLDLELDLDTLEVHRGNTLVNLSSANLKILELLMRSSP 167 R L + G LV S+A +I +L R Sbjct: 117 -----RALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQ 158
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 30.3 bits (68), Expect = 0.024 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 453 IDFDVVDHVARSKLDRRWDAVTG--RLGLVYDLTPNVSLYTQY 493 I + + D V +K W+ G LGL Y +T +V LYTQ Sbjct: 219 IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQV 261
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.0 bits (70), Expect = 0.012 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Query: 52 PIALYPDALLAQVLMAATYPG----EVAEAVT 79 P+A YP V ++A YPG V + VT Sbjct: 31 PVAQYPTIAPPAVSVSANYPGADAQTVQDTVT 62
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 52.6 bits (126), Expect = 1e-09 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 2/155 (1%) Query: 42 LSDIGRSFDMSTAQVGLMLTIYAWVVALASLPMMLLTRNIERRRLLLFVFLVFVVSHLLS 101 L DI F+ A + T + ++ + L+ + +RLLLF ++ ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 102 WLSQSFA-MLLLSRIGIALAHAVFWSITASLAVRVAPPGQQAKALGLLATGTTLAMVLGI 160 ++ SF +L+++R A F ++ + R P + KA GL+ + + +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 161 PLGRVVGEALGWRVTFLSIAGVALATMLCLMKSLP 195 +G ++ + W L I + + T+ LMK L Sbjct: 157 AIGGMIAHYIHWSYLLL-IPMITIITVPFLMKLLK 190
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 30.0 bits (67), Expect = 0.008 Identities = 8/37 (21%), Positives = 15/37 (40%) Query: 197 IGAALAHLREHYTEPLSVEALAARANMSVSTFHEHFK 233 + AL + S+ +A A ++ + HFK Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFK 53
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 5e-14 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 17/203 (8%) Query: 10 RKRLSRDQRRRQLLDKAWQLVREEGTEALSLGRLAEQAGVTKPVVYDHFETRTGLLAALY 69 + + + R+ +LD A +L ++G + SLG +A+ AGVT+ +Y HF+ ++ L + ++ Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 70 QDYDARQSMMLDQALSRCAATLSDRAGVIAEAYVDCVMSQGREMPGV-------SAALAG 122 + ++ + + ++ I ++ + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLES-TVTEERRRLLMEIIFHKCEFVGE 122 Query: 123 SPELEALKRAYEQPFLDKCRAAL------GEFTSHGDIGAAGMRLLVGAADAL--SQAAA 174 ++ +R D+ L + A + ++ G L + A Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI-IMRGYISGLMENWLFA 181 Query: 175 AGELQVGQAKDELQAAIVAMVQR 197 + + + A ++ M Sbjct: 182 PQSFDLKKEARDYVAILLEMYLL 204
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.1 bits (70), Expect = 0.001 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 84 VDEAARGRGVARLMCEHSQKLARQEGFLALQFNSVVASNEAAVALWHKLGF 134 V + R +GV + + + A++ F L N +A + K F Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLML-ETQDINISACHFYAKHHF 146
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.0 bits (150), Expect = 3e-14 Identities = 35/205 (17%), Positives = 66/205 (32%), Gaps = 17/205 (8%) Query: 1 MSRPT----IDHRAQILATAEKLIYENGIHATGMDLLVKTSGVSRKGIYNHFATKDDVAA 56 M+R T + R IL A +L + G+ +T + + K +GV+R IY HF K D+ + Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 57 AALSARDVRWMQWFRTECDK-----AATPYDRILSMFTVLKGWFETDGFRGCAF--INTA 109 + + K + + ++ + F Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 110 GEVGDPDDPIRQIAKLHKQKLLDYTFELTEQLNTDQPLDLARQLFILMEGAIT---TARV 166 GE+ R + ++ E L R I+M G I+ + Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRR-AAIIMRGYISGLMENWL 179 Query: 167 M--GDYHAADNAKEVAQMLLKELAP 189 + A++ +LL+ Sbjct: 180 FAPQSFDLKKEARDYVAILLEMYLL 204
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.7 bits (95), Expect = 5e-07 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 4/112 (3%) Query: 40 RPHLTSEADFVRRIERMRLEGYRLIGAYDAGVLVALAGYRLQENLVYGAFLYVDDLVTAE 99 +P+ D + + EG Y + R++ + + ++D+ A+ Sbjct: 44 KPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIG----RIKIRSNWNGYALIEDIAVAK 99 Query: 100 AQRGGQWGSRLLQALERLARASGCARLVLDTGLANARAQRFYFREGLLTGAL 151 R G+ LL A+ + L+L+T N A FY + + GA+ Sbjct: 100 DYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAV 151
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.0 bits (109), Expect = 2e-07 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 3/178 (1%) Query: 21 VITLCFVINMLDGFDVLVMAFTASSVAADWGLNGLRLGYLLSAGLVGMAIGSLFIAPWAD 80 +I LC ++ + +V+ + +A D+ ++ +A ++ +IG+ +D Sbjct: 16 LIWLCI-LSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 81 RFGRRPLILVCVGVAGTGMVLSSQA-TGPQMLAAFRFVTGLGIGGILASSYVIAGEYANK 139 + G + L+L + + G V+ + +L RF+ G G A V+ Y K Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 140 RWRGLAISLQSTAYALGATIGGLIAAKMIPALGWRSVFLYGGFVTLATLPALFLWLPE 197 RG A L + A+G +G I + + W + L +T+ T+P L L + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI-PMITIITVPFLMKLLKK 191
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.008 Identities = 21/125 (16%), Positives = 44/125 (35%) Query: 141 QKTKTGIQNYINANNNVAEFIKQARLEVSNLQASHDGLTSDSTSLAESIETLTAESAELS 200 + ++ +N + + IK E + L+A L +A+ L Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLE 287 Query: 201 ENVNKEMATLGQVKASLKDSEADLTKLNAEVEAKRSNAQQLDRERKILNDEIASLKQELS 260 A ++ + A+ L +++A R +QL+ E + L ++ + Sbjct: 288 AEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQ 347 Query: 261 SLVND 265 SL D Sbjct: 348 SLRRD 352
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 131 bits (330), Expect = 2e-39 Identities = 81/256 (31%), Positives = 127/256 (49%), Gaps = 14/256 (5%) Query: 11 VAGKVVLVTGAASGIGKAIAELLHSRGAKVIAEDIDPK-----VNALERPGLVP--FVAD 63 + GK+ +TGAA GIG+A+A L S+GA + A D +P+ V++L+ F AD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 64 ITVDGSAEQAVALAVEKFGKLDVLVNNAGRILYKPLVEMTREDWEWQMQTNVTGAFLHSR 123 + + ++ A + G +D+LVN AG + + ++ E+WE N TG F SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 EAMKEMMKNKSGAIVNIASYASYYAFPGIAAYTASKGALAQLTRTQALEAIEHGIRVNAI 183 K MM +SG+IV + S + +AAY +SK A T+ LE E+ IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 184 GVGDVVTNLLNHFM--EDG-----RGFLQEHGKSAPIGRAAAPEEIPEIVSFLASERASF 236 G T++ E+G +G L+ P+ + A P +I + V FL S +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 237 IVGSVVMADGGMSVPV 252 I + DGG ++ V Sbjct: 246 ITMHNLCVDGGATLGV 261
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.5 bits (237), Expect = 9e-26 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 8/231 (3%) Query: 3 GIEQKVIVITGASSGIGEATARLLASKGARVVLGARRTDRLETLAREIRSAGDVADVLAL 62 GIE K+ ITGA+ GIGEA AR LAS+GA + ++LE + +++ A+ Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 63 DVTNLDDMQSFIDFAIELHGRVDVLINNAGVMPLSKLEALKVDEWNRMIDVNIRGVLHGI 122 DV + + G +D+L+N AGV+ + +L +EW VN GV + Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 AATLPLMQEQRAGQIINIASIGAYAVSPTAAVYCATKYAVRAISEGLRQEVGG-DIRVTV 181 + M ++R+G I+ + S A + A Y ++K A ++ L E+ +IR + Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 182 IAPGVTESELADSI--SDEGGRTEMREFR---KIAIPASAIARA--IAYAV 225 ++PG TE+++ S+ + G ++ K IP +A+ IA AV Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.8 bits (75), Expect = 0.003 Identities = 14/26 (53%), Positives = 19/26 (73%) Query: 343 TIDGARALGMDKQIGSLEKGKAADII 368 TI+ A A G+ +IGSLE GK AD++ Sbjct: 410 TINPAIAHGLSHEIGSLEVGKRADLV 435
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 32.0 bits (73), Expect = 0.005 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 15/64 (23%) Query: 10 IDADGL-PLHIAVKNGRINHIGPQRASEP------------ARETIDLEGLLALPGFVDG 56 +D G+ I +K+GRI IG +A P E I EG + G +D Sbjct: 78 LDHWGIVKADIGLKDGRIAAIG--KAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDS 135 Query: 57 HIHL 60 HIH Sbjct: 136 HIHF 139
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 27.1 bits (60), Expect = 0.007 Identities = 12/61 (19%), Positives = 22/61 (36%) Query: 19 KRLLQSKGVTPYEINVEESPQHLAEMIQRAHRRTVPQIFVGSVHVGGFDDLASLDRQGRL 78 L + P+E P ++ IQ+ H +T+ I L+SL + + Sbjct: 106 NNLGSALQSRPFEFVRRADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQT 165 Query: 79 E 79 Sbjct: 166 N 166
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 68.8 bits (168), Expect = 5e-15 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 17/137 (12%) Query: 247 AKEPPTSDPIQLDSLNL-----FDPGSDELKPGSTKLL--VNALVGIKAQPGWLIVISGH 299 A P + +Q L F+ LKP L + + + +V+ G+ Sbjct: 201 APAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGY 260 Query: 300 ADARGDAAKNLDLSRARASAVRDWMQRMGDIPDSCFAVQGVAASQPVSSN--DTVNGR-- 355 D G A N LS RA +V D++ G IP + +G+ S PV+ N D V R Sbjct: 261 TDRIGSDAYNQGLSERRAQSVVDYLISKG-IPADKISARGMGESNPVTGNTCDNVKQRAA 319 Query: 356 -----AENRRVDIRLVP 367 A +RRV+I + Sbjct: 320 LIDCLAPDRRVEIEVKG 336
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.005 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 17/102 (16%) Query: 577 VVGQDPALVALAQRL-RAARTGLTDDKASMVVFLLVGTSGIGKTETAHALAHSLFGGEKS 635 +VG+ A+ + + L R +T LT ++ G SG GK A AL Sbjct: 139 LVGRSAAMQEIYRVLARLMQTDLT--------LMITGESGTGKELVARALHDYGKRRNGP 190 Query: 636 LITLNMSEYQEAHTVSQLKGSPPGYVGYGQGGVLTEAVRQRP 677 + +NM+ S+L G + G T A + Sbjct: 191 FVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRST 224
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 81.1 bits (200), Expect = 9e-19 Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 26/191 (13%) Query: 382 MVLRQDAQRLDHYYRQGEPWSLGIGLYQGERLRPSLLAAISGYR------IPAMPQGVPD 435 + + A RL++ + ++G G R +L+ YR P + Sbjct: 151 AITPEIATRLEYQWT----NNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAP 206 Query: 436 KP----RTVRLDSLSLFNSGSAQLKPESTKFLVNAFAGIKAQ--PGWLIVITGHTDATGS 489 P + L S LFN A LKPE L ++ + +V+ G+TD GS Sbjct: 207 APEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGS 266 Query: 490 DEQNLRLSRARAAAVHDWIQHMGDIPNNCFAVQGLGASEPVASNDTEQGRST-------- 541 D N LS RA +V D++ G IP + + +G+G S PV N + + Sbjct: 267 DAYNQGLSERRAQSVVDYLISKG-IPADKISARGMGESNPVTGNTCDNVKQRAALIDCLA 325 Query: 542 -NRRVEIRLVP 551 +RRVEI + Sbjct: 326 PDRRVEIEVKG 336
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.2 bits (63), Expect = 0.039 Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 16/128 (12%) Query: 155 GLLNSALALLGVG-PLPMLNTTFGSYVGYFTLCLPLVVLLQLFSLMYIDRTLIEAAHNLR 213 L AL +G+G +P+L V + +LL L++LM + A + R Sbjct: 10 ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDR 69 Query: 214 AGRLRTVFGVVLPSTRVGIVIAALFCFIMTFGDFVSPLYLG-------GGQPPTLSTLIT 266 GR P V + AA+ IM F+ LY+G G I Sbjct: 70 FGRR--------PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 267 DTTKSGQQ 274 D T ++ Sbjct: 122 DITDGDER 129
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 341 LEALLKENGNGIKAAQRLGLHRNTINQRIQRI 372 L AL GN IKAA LGL+RNT+ ++I+ + Sbjct: 442 LAALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.3 bits (221), Expect = 3e-23 Identities = 72/262 (27%), Positives = 106/262 (40%), Gaps = 34/262 (12%) Query: 9 AVVTGGASGLGAATARRLARYGVKVAIFDMNETVGLALANEIG--GIYCN---VDVTSDE 63 A +TG A G+G A AR LA G +A D N + + + + DV Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 64 QVDKAFTKARAAIGQERILVNCAGTADAVKTVSRDKKTGEIRPCTTDRFNRIIQINLLGT 123 +D+ + +G ILVN AG + G I + + + +N G Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVL----------RPGLIHSLSDEEWEATFSVNSTGV 120 Query: 124 FRCITKSVAGMMTLAPLDDGDRGVIINTASAAAQDGQVGQASYAASKAAVVGMTLPIARD 183 F MM D G I+ S A + A+YA+SKAA V T + + Sbjct: 121 FNASRSVSKYMM------DRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLE 174 Query: 184 LMDEGIRVNTVMPGLFGTPLMQSL---PDNVQQALAAS-------VPFPKRLGEPDEFAR 233 L + IR N V PG T + SL + +Q + S +P K+L +P + A Sbjct: 175 LAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPL-KKLAKPSDIAD 233 Query: 234 TVEFLV--NCGYMNAESLRVDG 253 V FLV G++ +L VDG Sbjct: 234 AVLFLVSGQAGHITMHNLCVDG 255
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 28.1 bits (62), Expect = 0.007 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 7 LTGKQVLVTGASSGLGENFARLAIDCKANMVIGARRKNRLDEFAKELERPGSPQISVLEM 66 + GK +TGA+ G+GE AR A+ + E + + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAH-IAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 67 DVTSEQSLDQAFAELDISGAILEVVVSNAG 96 DV ++D+ A ++ ++++V+ AG Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVNVAG 94
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.005 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 22 KASEDKAQDAQEHAEQAQEKMGEAQDKMNDAAEENAEAAKDQAEAEQKAAEEAAPATPAT 81 K E QDA E Q +E EA+ + + N E A+ +E + + T Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN-EVAQSGSETK-ETQTTETKETATV 1106 Query: 82 APAEPAK 88 E AK Sbjct: 1107 EKEEKAK 1113
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 87.3 bits (216), Expect = 5e-22 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 12/135 (8%) Query: 134 VEAQIAALASQQADRGLVMTLGDVLFDTGRADLKNSASRTVLKLVQFL-QLNPRRV-VRI 191 V A A A + + + DVLF+ +A LK + +L L L+P+ V + Sbjct: 199 VVAPAPAPAPEVQTKHFTLK-SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVV 257 Query: 192 EGYADNTGAPEDNLKLSRDRAQAVADMLVDLGVDEKRLQVEGYGDQYPIEANASERGR-- 249 GY D G+ N LS RAQ+V D L+ G+ ++ G G+ P+ N + + Sbjct: 258 LGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQR 317 Query: 250 -------AQNRRVEI 257 A +RRVEI Sbjct: 318 AALIDCLAPDRRVEI 332
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.4 bits (84), Expect = 2e-04 Identities = 62/317 (19%), Positives = 113/317 (35%), Gaps = 47/317 (14%) Query: 67 VTGY-LARPLGGIVMAHFADHLGRKRVFSLSILMMALPCLLIGVMPTYAEIGYAAPLILL 125 T + L +G V +D LG KR+ I++ ++ V ++ + L+ Sbjct: 55 NTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSL-------LI 107 Query: 126 ALRILQGAAVGGEVPSAWTFVAEHAPQGRRGYALGFLQAGLTFGYLLGALTATLLAQ--- 182 R +QGA VA + P+ RG A G + + + G +G ++A Sbjct: 108 MARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH 167 Query: 183 --------------VFTAQEILDYAWRY--PFLLGG--------VFGVIGVWLRRW--LS 216 V ++L R F + G VF ++ L Sbjct: 168 WSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLI 227 Query: 217 ETPVFLALRERKEQPVKFPLRRV-LGEHRGALVPAALLTCVLTSAVVVLVVITPTVMQQR 275 + + + + + V P LG++ + L ++ V V + P +M+ Sbjct: 228 VSVLSFLIFVKHIRKVTDPFVDPGLGKNI-PFMIGVLCGGIIFGTVAGFVSMVPYMMKDV 286 Query: 276 FGMTAAHTFALSSV----GIVFLNIGCVLAGLLVDRLGAWRALMIYSVLLPLG-IGALYA 330 ++ T + SV G + + I + G+LVDR G L I L + + A + Sbjct: 287 HQLS---TAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFL 343 Query: 331 SLVGQWGMTWLAYALAG 347 W MT + + G Sbjct: 344 LETTSWFMTIIIVFVLG 360
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 5e-04 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 7 RILIADEHPSQRLQLERLLNGLGYYRIAPVDSFDELQRLVHCALQPFNLLVGNIELASHA 66 IL+AD+ + R L + L+ G Y + + L R + A +L+V ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWI--AAGDGDLVVTDVVMPDEN 61 Query: 67 GVDL 70 DL Sbjct: 62 AFDL 65
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 56.8 bits (137), Expect = 7e-11 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 36/222 (16%) Query: 14 LEVRMRRISNTRRNLLAGSLGLLALGSLLAWKTLPMGTLPISTVAVARADIESSVTALGT 73 LE+ +S RR L + L L +E TA G Sbjct: 46 LELIETPVS--RRPRLVAYFIMGFLVIAFILSVL--------------GQVEIVATANGK 89 Query: 74 LQPR-RYVDVGAQASGQIRKLHVEAGDQVHTGQLLVEIDPSTQQARLDAGRFSIDNLKAQ 132 L R ++ + ++++ V+ G+ V G +L+++ A D + L+A+ Sbjct: 90 LTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL--GAEADTLKTQSSLLQAR 147 Query: 133 LAEQRAQYLLATQQYRRQREL-----AGAGATREEDLQAADAQLKVTQARIDMIQAQIRQ 187 L + R Q L + + + EL EE++ + + + + Q Q Q Sbjct: 148 LEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI---KEQFSTWQNQKYQ 204 Query: 188 AQANLRSDEAELGYTRIYAPMDGTVVAVDAREGQTLNAQQQT 229 + NL AE + ++ E + + + Sbjct: 205 KELNLDKKRAER---------LTVLARINRYENLSRVEKSRL 237 Score = 52.1 bits (125), Expect = 2e-09 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 46/209 (22%) Query: 97 AGDQVHTGQLLVEIDPSTQQARLDAGRFSIDNLKAQLAEQRAQYLLATQQYRRQRE---- 152 + ++V L++ ST Q + ++D +A+ A+ R ++ Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Query: 153 ---LAGAGA-------TREEDLQAADAQLKVTQARIDMIQAQIRQAQANLR--------- 193 L A +E A +L+V +++++ I+++I A+ + Sbjct: 240 FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNE 299 Query: 194 --------------------SDEAELGYTRIYAPMDGTVVAVDAR-EGQTLNAQQQTPLI 232 +E + I AP+ V + EG + + L+ Sbjct: 300 ILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE--TLM 357 Query: 233 LRIAKLSPMTVWAQVSEADIGKVKPGMTA 261 + + + + V A V DIG + G A Sbjct: 358 VIVPEDDTLEVTALVQNKDIGFINVGQNA 386
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 31.9 bits (72), Expect = 0.047 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 2/80 (2%) Query: 999 PQPEAGAQGTHVAPQSAAERQLAKVWCEVLGAA--QVGLDDNFFELGGDSIIAIQVVSRA 1056 P + K E+L + ++ + G DS+ + +V + Sbjct: 214 PADVQKTSANTGKKNVFTCENIRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTLVEQW 273 Query: 1057 RQAGLALSPRDLFQHQTLRA 1076 R+ G ++ +L + T+ Sbjct: 274 RREGAEVTFVELAERPTIEE 293
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.030 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 17/131 (12%) Query: 146 QALASGLQSASLGWSLLAFFGLG----LLLAFTPCSLPMLPILAGLVMGNGASARRGWVL 201 +AL G+ + G+ LLAF G ++ +P L ++ R+G + Sbjct: 278 RALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQ 337 Query: 202 AGVYVLSMALVYAGLGVVAALLGASLQAWLQQPWLLGSLAALFVILALPMFGAFELQLPA 261 + L+ G + A+ AS+ W W+ G AAL+++ LPA Sbjct: 338 GSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAG--AALYLLC-----------LPA 384 Query: 262 ALRDRLDRAGQ 272 R AGQ Sbjct: 385 LRRGLWSGAGQ 395
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 43.0 bits (101), Expect = 2e-06 Identities = 25/124 (20%), Positives = 36/124 (29%), Gaps = 6/124 (4%) Query: 393 VPEASVAADAVPAAVVAAPQAEPAAVVEAMSAVPPQPEPKAELAEPEPAPEEEVIDLPWE 452 V E A + +VA EP V+ +PEP+ E PEP E V Sbjct: 40 VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPI-PEPPKEAPV-----V 93 Query: 453 EPAAKPAPVAVKPEPAPAPAAAPQPPVAEPQDAQPAYDEPPFDPSAYASAGMERDDEPPM 512 KP P E + A P + P P++ + + Sbjct: 94 IEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSV 153 Query: 513 DEDY 516 Sbjct: 154 ASGP 157 Score = 41.1 bits (96), Expect = 7e-06 Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 5/144 (3%) Query: 362 DSDDAPKPVLKPVGISQATADPATPVAAPAVVPEASVAADAVPAAVVAAPQAEPAAVVEA 421 + P P A AD P A P V + P E V+E Sbjct: 39 QVIELPAPAQPISVTMVAPADLEPPQAV--QPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 96 Query: 422 MSAVPPQPEPKAELAEPEPAPEEEVIDLPWEEPAAKPAPVAVKPEPAPAPAAAPQPPVAE 481 P+P+PK +P + + ++ P AP P + A AA +P + Sbjct: 97 -PKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPAR--PTSSTATAATSKPVTSV 153 Query: 482 PQDAQPAYDEPPFDPSAYASAGME 505 + P P+ + +E Sbjct: 154 ASGPRALSRNQPQYPARAQALRIE 177 Score = 34.6 bits (79), Expect = 8e-04 Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 6/144 (4%) Query: 398 VAADAVPAAVVAAPQAEPAAVVEAMSAVPPQPEPKAELAEPEPAPEEEVIDLPWEEPAAK 457 V A + +V + A +++ V P + +P P P E EP + Sbjct: 28 VVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVE------PEPEPE 81 Query: 458 PAPVAVKPEPAPAPAAAPQPPVAEPQDAQPAYDEPPFDPSAYASAGMERDDEPPMDEDYY 517 P P K P P+P + + P A + P Sbjct: 82 PIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSST 141 Query: 518 GGESDPVGFSYLDELVEHVQEEAP 541 + + + + P Sbjct: 142 ATAATSKPVTSVASGPRALSRNQP 165
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 324 bits (831), Expect = e-111 Identities = 108/355 (30%), Positives = 190/355 (53%), Gaps = 17/355 (4%) Query: 9 DKTEDPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLEMMRL---- 64 +KTE PT K+ RDAR+KG++A+SKE+ + A+ +A + L+ + E ++M + Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQ 63 Query: 65 ---NFSLTREVIVDEGAMGAFLLASGKMAIWAVQPVLILLFVVAFIAPIALGGFLFSGSL 121 FS +VD + F L P+L + ++A + + GFL SG Sbjct: 64 SYLPFSQALSYVVDNVLLEFFYLCF---------PLLTVAALMAIASHVVQYGFLISGEA 114 Query: 122 LQPKFSRMNPLAGIKRMFSMNALTELLKAVAKFIVILVVALVVLANDRQALLAIANEPLD 181 ++P ++NP+ G KR+FS+ +L E LK++ K +++ ++ +++ + LL + ++ Sbjct: 115 IKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIE 174 Query: 182 QAIIHSVQVVGWSALWMSAGLLLIAAADVPFQLWQTHKKLKMTKQEVKDEYKDSEGKPEV 241 Q++ + + G ++I+ AD F+ +Q K+LKM+K E+K EYK+ EG PE+ Sbjct: 175 CITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEI 234 Query: 242 KQRIRQLQREVSQRRMMAAVPDADVIITNPTHYAVALQYDPEKGGVAPLLLAKGTDFIAL 301 K + RQ +E+ R M V + V++ NPTH A+ + Y + PL+ K TD Sbjct: 235 KSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETP-LPLVTFKYTDAQVQ 293 Query: 302 KIREIGVEHKVQILESPALARAIYYSTEIEQEIPAGLYLAVAQVLAYVFQIRQYR 356 +R+I E V IL+ LARA+Y+ ++ IPA A A+VL ++ + + Sbjct: 294 TVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEK 348
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 133 bits (336), Expect = 4e-40 Identities = 98/255 (38%), Positives = 152/255 (59%), Gaps = 2/255 (0%) Query: 1 MLELTDAQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARIRLYAAVAITVVIVPALPP 60 ML++T Q +W+ + PL RV A++ T PI R +P R++L A+ IT I P+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 LPEFDPLSLRGLLLCGEQIIVGALFGFSLQLLFQAFVIAGQIIAIQMGMAFASMVDPANG 120 S L L +QI++G GF++Q F A AG+II +QMG++FA+ VDPA+ Sbjct: 61 NDVPV-FSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 VNVAVVSQFMTMLVSVLFLVMNGHLVVFEVLTESFTTLPVGNALVVNHFWE-MAGRLSWV 179 +N+ V+++ M ML +LFL NGHL + +L ++F TLP+G + ++ + + S + Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 180 FGAGLLLILPAIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVGLADVLSH 239 F GL+L LP I LL +N+A G++ R APQL+IF IGFPLTL +G+ + + + Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 240 YQALASEALQWLREL 254 + L SE L ++ Sbjct: 240 CEHLFSEIFNLLADI 254
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 52.8 bits (127), Expect = 6e-13 Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 7 VDLFRDALWLTTLMVAILVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLVTLIVAG 66 V AL+L ++ + + ++GL+V +FQ TQ+ EQTL F +LL + + L + Sbjct: 5 VFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLS 64 Query: 67 PWLTQKFMEYI 77 W + + Y Sbjct: 65 GWYGEVLLSYG 75
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 221 bits (565), Expect = 3e-66 Identities = 142/447 (31%), Positives = 245/447 (54%), Gaps = 16/447 (3%) Query: 2 ASLINIGMSGLSASQSGLHTTGNNIANADVAGYSRQQNIQRAKGSLQEGQLFMGTGTTLA 61 +SLIN MSGL+A+Q+ L+T NNI++ +VAGY+RQ I S ++G G ++ Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 62 DVRRVYNAFLDAQLQTATSLNSDSTAYLNQVTPLNNLLSDSNTGITGALTNFFSALQSAA 121 V+R Y+AF+ QL+ A + +S TA Q++ ++N+LS S + + + +FF++LQ+ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 122 NKPTEDASRQLLLSNADALANRFNSLSAQFKEQNTNINGNLSSMTARINELTSSIAQYNE 181 + + A+RQ L+ ++ L N+F + ++Q+ +N + + +IN IA N+ Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 182 QISKVSAINGQ--PNDLLDQRNEAVRQLNELVGVQ-TVERDGNIDVYLKNGQSLVLGKTT 238 QIS+++ + PN+LLDQR++ V +LN++VGV+ +V+ G ++ + NG SLV G T Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 239 NKMSAEPSATDP--TQFAIKLDRGSTTMDITNSITGGEMGGLLRYRSETLAPAMNELGRI 296 +++A PS+ DP T A + G +GG+L +RS+ L N LG++ Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQL 300 Query: 297 ALVVSQQINSQLGQGIDKNGEFGAALFGDINSDKAMSARSTAKIGNAGDAALNVVIRDTG 356 AL ++ N+Q G D NG+ G F I + N GD A+ + D Sbjct: 301 ALAFAEAFNTQHKAGFDANGDAGEDFF-AIGKPAVLQNTK-----NKGDVAIGATVTDAS 354 Query: 357 KLSTSDYQVTFVGPTADKFQVKKLPDGTDMGTYSTNDDPAPVIDGFSIDLKSGTAAVGDS 416 + +DY+++F +++QV +L T T + + + DG + GT AV DS Sbjct: 355 AVLATDYKISFDN---NQWQVTRLASNT-TFTVTPDANGKVAFDGLELTFT-GTPAVNDS 409 Query: 417 FKITPTRNASAEIDVVLTDAKRLALAA 443 F + P +A +DV++TD ++A+A+ Sbjct: 410 FTLKPVSDAIVNMDVLITDEAKIAMAS 436 Score = 76.9 bits (189), Expect = 8e-17 Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Query: 573 AGSSDNRNALSLQELQTKQTMDIGSTKGISITDAYGKLVESVGAQAKQGQMDTQATGVIL 632 AG SDNRN +L +LQ+ G+ DAY LV +G + + + G ++ Sbjct: 440 AGDSDNRNGQALLDLQSNSKTVGGAKS---FNDAYASLVSDIGNKTATLKTSSATQGNVV 496 Query: 633 TQAAGARDSLSGVQLDEEASNLIKYQQYYTASSQIIKTAQDIFNTLIA 680 TQ + + S+SGV LDEE NL ++QQYY A++Q+++TA IF+ LI Sbjct: 497 TQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 143 bits (362), Expect = 6e-42 Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 226 DSDAFVATMLPMAEQAAKRIGVDPRYLVAQAALETGWGKSVMRNSDGSSSHNLFGIKATG 285 DS AF+A + A+ A+++ GV ++AQAALE+GWG+ +R +G S+NLFG+KA+G Sbjct: 148 DSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASG 207 Query: 286 NWEGDSARAITSEFRDGQFVKETAAFRSYDSYQDSFHDLVSLLQNNSRYQEAVKAADKPE 345 NW+G T+E+ +G+ K A FR Y SY ++ D V LL N RY AV A E Sbjct: 208 NWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYA-AVTTAASAE 266 Query: 346 QFVQELQKAGYATDPNYASKISQIARQMKS 375 Q Q LQ AGYATDP+YA K++ + +QMKS Sbjct: 267 QGAQALQDAGYATDPHYARKLTNMIQQMKS 296 Score = 71.3 bits (174), Expect = 6e-16 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 2 NSKSLVSSAADSGAYTDLNRLSSLKHGDRDSDANVRKVAQEFESLFISEMLKASRKASDV 61 +SK L S+A D+ + LN L + K G+ D AN+R VA++ E +F+ MLK+ R D Sbjct: 4 DSKLLASAAWDAQS---LNELKA-KAGE-DPAANIRPVARQVEGMFVQMMLKSMR---DA 55 Query: 62 LADDNPMNSATVKQYRDMYDQQLAVSMSREGGGIGLQDVLVRQLSKNKSAPVNTSPFPRI 121 L D +S + Y MYDQQ+A M+ G G+GL +++V+Q++ + P ++P + Sbjct: 56 LPKDGLFSSEHTRLYTSMYDQQIAQQMT-AGKGLGLAEMMVKQMTPEQPLPEESTPAAPM 114 Query: 122 EGSAPALWGNKVADPVHAAQSAASRNDVAAL--NSR----RLALPGKLTDRLLAGIVPSA 175 + + + Q A RN +L +S+ +L+LP +L + VP Sbjct: 115 KFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSG--VPHH 172 Query: 176 VNPAAA 181 + A A Sbjct: 173 LILAQA 178
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 450 bits (1158), Expect = e-161 Identities = 167/366 (45%), Positives = 223/366 (60%), Gaps = 10/366 (2%) Query: 7 LIAATLLLSCAFGAHAERLKDIASISGVRSNQLIGYGLVVGLNGTGDQTTQTPFTLQTFN 66 A L + A R+KDIAS+ R NQLIGYGLVVGL GTGD +PFT Q+ Sbjct: 13 FSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMR 72 Query: 67 NMLSQFGIKVPAGSGNVQLKNVAAVSVHADLPPFAKPGQVVDITVSSIGNSKSLRGGSLL 126 ML GI G N KN+AAV V A+LPPFA PG VD+TVSS+G++ SLRGG+L+ Sbjct: 73 AMLQNLGITTQGGQSNA--KNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLI 130 Query: 127 MTPLKGIDGNVYAVAQGNLVVGGFDAEGRDGSKITVNVPSAGRIPGGASVERAVPSGFNQ 186 MT L G DG +YAVAQG L+V GF A+G D + +T V ++ R+P GA +ER +PS F Sbjct: 131 MTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIERELPSKFKD 189 Query: 187 GNTLTLNLNRPDFTTAKRIVDKVNEL----LGPGVAQAVDGGSVRVSAPMDPTQRVDYLS 242 L L L PDF+TA R+ D VN G +A+ D + V P ++ Sbjct: 190 SVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VADLTRLMA 248 Query: 243 ILENLEIDPGQAVAKVIINSRTGTIVIGQNVKVSPAAVTHGSLTVTITEDPIVSQPGPFS 302 +ENL ++ AKV+IN RTGTIVIG +V++S AV++G+LTV +TE P V QP PFS Sbjct: 249 EIENLTVET-DTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFS 307 Query: 303 NGETAVVPRSRVNAQQEAKPMFKFGPGTTLDEIVRAVNQVGAAPSDLMAILEALKQAGAL 362 G+TAV P++ + A QE + G L +V +N +G ++AIL+ +K AGAL Sbjct: 308 RGQTAVQPQTDIMAMQEGSKVA-IVEGPDLRTLVAGLNSIGLKADGIIAILQGIKSAGAL 366 Query: 363 QADLIV 368 QA+L++ Sbjct: 367 QAELVL 372
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (487), Expect = 2e-63 Identities = 84/221 (38%), Positives = 112/221 (50%), Gaps = 15/221 (6%) Query: 16 LAGCVAPTAKPNDPYYAPVLPRTPLPAAANNGSIYQAGF-----EQNLYSDRKAFRVGDI 70 L GC + P P P P NGSI+Q+ Q L+ DR+ +GD Sbjct: 19 LTGCAWIPSTPLVQGATSAQP-VPGPTPVANGSIFQSAQPINYGYQPLFEDRRPRNIGDT 77 Query: 71 ITITLNERTSASKNAGSQIQKDSSANIGLTSLFGATP-STNNPFGSGDLSLEAGYSGERA 129 +TI L E SASK++ + +D N G F P FG+ +E SG Sbjct: 78 LTIVLQENVSASKSSSANASRDGKTNFG----FDTVPRYLQGLFGNARADVE--ASGGNT 131 Query: 130 TKGDSKATQGNTLTGSITVTVAEVLPNGIIAVRGEKWMTLNTGEELVRIAGLIRADDIAT 189 G A NT +G++TVTV +VL NG + V GEK + +N G E +R +G++ I+ Sbjct: 132 FNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISG 191 Query: 190 DNTVPSTRVADARITYSGTGSFADASQPGWLDRFF--LSPL 228 NTVPST+VADARI Y G G +A GWL RFF LSP+ Sbjct: 192 SNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.6 bits (100), Expect = 9e-07 Identities = 12/44 (27%), Positives = 21/44 (47%) Query: 216 QQTLENSNVSTVEELVNMITTQRAYEMNSKVISTADQMLSFVTQ 259 Q S V+ EE N+ Q+ Y N++V+ TA+ + + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 38.4 bits (89), Expect = 2e-05 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 27/107 (25%) Query: 5 LWVAKTGLSAQDTNLTVISNNLANVSTTGFKRDRAEFQDLLYQIKRQPGAQSTQDSELPS 64 + A +GL+A L SNN+++ + G+ R + +S L + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT--------------IMAQANSTLGA 49 Query: 65 GLQVGTGVRIVGTQK-------------NFQTGSLQTTENPLDMAVN 98 G VG GV + G Q+ Q+ L + N Sbjct: 50 GGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDN 96
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 47.6 bits (113), Expect = 6e-08 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 2 SFNIGLSGLYAANKQLDVTGNNIANVNTTGFKSSRAEFADVYAGANRLGVGKNQVGNGVR 61 N +SGL AA L+ NNI++ N G+ A + LG G VGNGV Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA---QANSTLGAGGW-VGNGVY 58 Query: 62 LAAISQQFSQ 71 ++ + +++ Sbjct: 59 VSGVQREYDA 68 Score = 40.3 bits (94), Expect = 1e-05 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Query: 386 FSSGLPGIDEPKTGTLGSVESNALEA--------SNVNLTQELVELIKAQSNYQANAKTI 437 G T + + N + S VNL +E L + Q Y ANA+ + Sbjct: 473 SLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVL 532 Query: 438 STESTIMQTIIQM 450 T + I +I + Sbjct: 533 QTANAIFDALINI 545
>PF03944#delta endotoxin Length = 633 Score = 31.6 bits (71), Expect = 0.007 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 3 GIYSAHLLERLGRNQGIRLLHECRRVLQPGGVIRLVCSDLKALVEDYLNNRTRPEAPGIG 62 G ++ LL+++G G R+L E R ++ P G L+ L+ E +LN R + Sbjct: 55 GTVASFLLKKVGSLVGKRILSELRNLIFPSGSTNLMQDILRE-TERFLNQRLNTDTVARV 113 Query: 63 RAE 65 AE Sbjct: 114 NAE 116
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 28.8 bits (64), Expect = 0.018 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%) Query: 95 FGHQRKCWQNG-GREHCVNEDPTFRAMEADLFN-LYPSVGEVNGDRSNFNYGMVSGVARQ 152 + ++ W+ G+ + VN T ++ F Y S DR N++Y VSG + Sbjct: 74 YSEEKGEWKEAEGKAYFVN-GSTDGYLKVSFFGPFYGSYVVFELDRENYSYAFVSGPNTE 132 Query: 153 YGQCTTKVDFQQKTAEPRDEVKG-LVARTTFYMFDRYKLSMSRQQ 196 Y + +T + + + FD +L +QQ Sbjct: 133 Y------LWLLSRTPTVERGILDKFIEMSKERGFDTNRLIYVQQQ 171
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 74.2 bits (182), Expect = 2e-15 Identities = 49/124 (39%), Positives = 65/124 (52%), Gaps = 8/124 (6%) Query: 2323 GASATADYAQAEGAVTVDLSLEGPQD-TGGAGVETLS---GIYNLIGSDFGDTLIGNSAD 2378 G + T D++ ++L+ D G G +++ I N IG D L+GNSAD Sbjct: 299 GGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSAD 358 Query: 2379 NVLNGGAGNDVLTGGGGNDILTGGNGSDTFVWQKND----SGHDTLNDFTPGSDKLDLSQ 2434 N+L GGAGNDVL GG G D L GG G DTFV+ + +D + DF G DK+DLS Sbjct: 359 NILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSA 418 Query: 2435 LLQG 2438 Sbjct: 419 FRNE 422
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 317 bits (813), Expect = e-106 Identities = 110/441 (24%), Positives = 207/441 (46%), Gaps = 8/441 (1%) Query: 19 EHDYMPELASATLQDSPRLSRLTVWLAAALLLAAVIWASLAVLDEVTVGEGKAIPSSKVQ 78 E++++P R RL + L+ A I + L ++ V GK S + + Sbjct: 38 ENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSK 97 Query: 79 VVQNLEGGIVTEIFVREGQMVDKGATLLRLDDTRFKSNKGESEADRYALTAQVERLSAEA 138 ++ +E IV EI V+EG+ V KG LL+L +++ ++++ + R + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 139 EGRPFVLSEEVRAKAPQVAED--------ELSLYDSRQRRLASEKQTLNEQLRQKTQELA 190 E++ ++ SL + ++K L +K E Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 191 EFRSKVEQYRSAVGLLQQELNMSAPLVSKGAISPVEILRLKQRTVEARGQLNATSLAIPR 250 +++ +Y + + + L+ + L+ K AI+ +L + + VEA +L + + Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQ 277 Query: 251 AEAAVAEIRSKIQESDASFRSEAAKELNDKRTELSKITATSIAIDDRVNRTTVVSPVHGI 310 E+ + + + Q F++E +L + +T ++R + + +PV Sbjct: 278 IESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVK 337 Query: 311 VKMLKVNTIGGVVQPGSDLVEIVPIEDNLLIEAKVRPQDVAFLHPGQPAMVKFSAYDYTI 370 V+ LKV+T GGVV L+ IVP +D L + A V+ +D+ F++ GQ A++K A+ YT Sbjct: 338 VQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTR 397 Query: 371 YGGMKAKLELISADTVTDDKGNAFYLIQVRTEKNHLGGDNKPLLIIPGMVATVDIITGQK 430 YG + K++ I+ D + D + + + + E+N L NK + + GM T +I TG + Sbjct: 398 YGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457 Query: 431 SVLDYLLKPVLKARTEALRER 451 SV+ YLL P+ ++ TE+LRER Sbjct: 458 SVISYLLSPLEESVTESLRER 478
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.2 bits (73), Expect = 0.006 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 11/86 (12%) Query: 281 SATAIAQMAATIQEVTHNVQS---TAHAAGDADQLAQQ--------GSELAQQSLKAMGS 329 A I + Q+ TA ++ D+L ++ SELA+ S++ + Sbjct: 131 GAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKASIELINQ 190 Query: 330 MSEAVSDIGQAVNALAQQTQSIGSVV 355 + + V+ + VN+ +QQ ++GSV+ Sbjct: 191 LVDTVASLNNNVNSFSQQLNTLGSVL 216
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 49.0 bits (116), Expect = 1e-07 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 11/87 (12%) Query: 1279 WSTARKNYWKAEAKAP--TQTYSPANLARMAEGKAPRITVEVISRKTDKISIKEYSLELH 1336 W R+ +W A A P ++ ++P +LA M +G AP R++++ + +E+H Sbjct: 532 WRDFREQFWIAVANDPELSKQFNPGSLAVMRDGGAPY------VRESEQAGGRI-KIEIH 584 Query: 1337 HNAIPQRVGGDGVHESPNILALTPWEH 1363 H + GG GV+ N++A+TP H Sbjct: 585 HK-VRVADGG-GVYNMGNLVAVTPKRH 609
>SECA#SecA protein signature. Length = 901 Score = 29.5 bits (66), Expect = 0.007 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 109 KRARERREQQEAAAKRLAAEDDQVGVGAPLAAERGDRY--RNDPPP 152 ++ R ++ A ++L+ +DD A LAA+ G+R RNDP P Sbjct: 841 EQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCP 886
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 35.5 bits (81), Expect = 0.001 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 16/169 (9%) Query: 664 KDRTKALNDEIKALDAIIDRALPEKKRLEDLAEGVQGLRKAQAAGKITAAEMELGIKNLN 723 +D K L ++A D AL K L L + L A + ++ L K + Sbjct: 83 RDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKIT 142 Query: 724 TAYADPVLQKRAEE--ERKLAEVRRNSAEAYRKAMEVVLQTRQEAISADVAGVGMGDDQR 781 + A L + AEE E+ + E N EAY + ++ ++ A + + + Q Sbjct: 143 SLGAKNFLTRTAEEIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLFTEAISSLQI 202 Query: 782 EEADRLNAVR-------------QKYAEARRQLEEQQEDVSRRLSQDAY 817 + L A + Q AEA+R+ EEQ + + + Y Sbjct: 203 RM-NTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTY 250
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 3e-04 Identities = 17/68 (25%), Positives = 21/68 (30%) Query: 56 RAAKPKEIKPAAAKEEKASTEKAAAAKAAADKAEAEKAAVEKEAAEKAAAEKEAADKAAA 115 A + AKE K++ + A K E E A EKE K Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 116 EKAAAEAK 123 EK K Sbjct: 1117 EKTQEVPK 1124
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 115 bits (288), Expect = 2e-33 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 12/112 (10%) Query: 65 YFEYDSSDLKPEAMRALDVHA---KDLKSNGNRVVLEGNTDERGTREYNMALGERRAKAV 121 F ++ + LKPE ALD +L VV+ G TD G+ YN L ERRA++V Sbjct: 222 LFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSV 281 Query: 122 QRYLVLQGVSPAQLELVSYGEERPVATGNDEQS---------WAQNRRVELR 164 YL+ +G+ ++ GE PV + A +RRVE+ Sbjct: 282 VDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIE 333
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 64.7 bits (157), Expect = 2e-13 Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 8/218 (3%) Query: 37 TPELPPSKPIVQATLYQLKSKSQATTQTNQKIAGEAKKTASRQTEVEQLEQKKVEQEAVK 96 T P+ ++ A + A T S TE K+ + K Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVD-EAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 97 A---AEQKKADAAQKAEEAREAAEA--KKAEDAAKAAEAKKAAEAKKADEAKKAAEKQQA 151 A + A + A+EA+ +A + E A +E K+ + + A E++ Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK 1113 Query: 152 DIAKKKAEEEAKKQAAEEAKKQAAEDAKKKAAEEAKKKAAEDAKKKAAAEDAKKKAAEEA 211 +K E K ++ + KQ + + AE A++ K+ ++ E+ Sbjct: 1114 VETEKTQEV--PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP 1171 Query: 212 KKKAAADAQKKKAQEAARKAAEDKKAQALAELLSDTTE 249 K+ +++ ++ + + T Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Score = 58.5 bits (141), Expect = 2e-11 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 15/197 (7%) Query: 69 AGEAKKTASRQTEVEQLEQKKVEQEAVKAAEQKKADAAQKAEEAREAAEAKKAEDAAKAA 128 + Q +V + E V A A +E AE K E Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 129 EAKKAAEAKK-----ADEAKKA--AEKQQADIAKKKAE-EEAKKQAAEEAKKQAAEDAKK 180 + A E A EAK A Q ++A+ +E +E + +E E+ K Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK 1113 Query: 181 KAAE---EAKKKAAEDAKKKAAAEDAKKKAAEEAKKKAAADAQKKKAQE----AARKAAE 233 E E K ++ + K+ +E + +A + + ++ ++Q + A+ Sbjct: 1114 VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAK 1173 Query: 234 DKKAQALAELLSDTTER 250 + + + TT Sbjct: 1174 ETSSNVEQPVTESTTVN 1190 Score = 51.2 bits (122), Expect = 4e-09 Identities = 33/215 (15%), Positives = 69/215 (32%), Gaps = 4/215 (1%) Query: 43 SKPIVQATLYQLKSKSQATTQTNQKIAGEAKKTASRQTEVEQLEQKKVEQEAVKAAEQKK 102 +K V+A + +Q+ ++T + E K+TA+ + E + + + QE K Q Sbjct: 1072 AKSNVKANTQTNE-VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 103 ADAAQKAEEAREAAEAKKAEDAAKAAEAKKAAEAKKADEAKKAAEKQQA--DIAKKKAEE 160 Q +E + AE + D + ++ AD + A E + Sbjct: 1131 PKQEQ-SETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 161 EAKKQAAEEAKKQAAEDAKKKAAEEAKKKAAEDAKKKAAAEDAKKKAAEEAKKKAAADAQ 220 E + + E+ K ++ + + A + + A Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Query: 221 KKKAQEAARKAAEDKKAQALAELLSDTTERQQALA 255 D +A+A L+ Q ++ Sbjct: 1250 CDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHIS 1284
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 29.7 bits (66), Expect = 0.011 Identities = 15/35 (42%), Positives = 21/35 (60%) Query: 101 SLRIIGDRSRFHPELQAAMREAEAQTAGSNRFILQ 135 S+ I G+ + ELQ AM A Q A ++RFIL+ Sbjct: 555 SVEIFGENQKVTAELQKAMSSAVQQNADASRFILR 589
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 34.4 bits (79), Expect = 3e-04 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 15/82 (18%) Query: 129 LNAKEVVIFAAGTGNPFFTT-------------DSAACLRAIEIDADVVLKATKVDGVYT 175 + +VI + G G P D A A E++AD+ + T V+G Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 176 ADPFKDPHAEKFDHLTYDEVLD 197 + + + +E+ Sbjct: 243 Y--YGTEKEQWLREVKVEELRK 262
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.016 Identities = 23/97 (23%), Positives = 39/97 (40%) Query: 22 DCKKALEKAGGDIEKAIDDMRASGAIKAAKKAGNVAAEGAIAVKTDGKSAVLLEVNSQTD 81 DC+ A+E G DI++ + + A+ A + AA GA + K + Sbjct: 358 DCRDAIETDGWDIDRVLAYFGTARALLADVSSPTAAAGGAGGGEPPKKRDPSAGAGTDPG 417 Query: 82 FLALQDDFKNFVAESLEEAFAQKLTDAAPLIASREAA 118 DD ++ E L++ A+ L+ R AA Sbjct: 418 GPGGGDDGEDPFGEWLDDEVARLRLRGRWLLKPRRAA 454
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.3 bits (81), Expect = 2e-04 Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 2/93 (2%) Query: 174 VTLSQQGESAPLPLEQAPAEPVAEAISEAAPAAAAGAPVQQAPAQAEAAAPTTAAPAAPA 233 VT+ + P Q P EPV E E P P + + P Sbjct: 52 VTMVAPADLEPPQAVQPPPEPVVE--PEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Query: 234 TPAAPVAQAAPVAPAASVPAIASEPAAVPAGSA 266 P PV + P + PA + +A Sbjct: 110 KVEQPKRDVKPVESRPASPFENTAPARPTSSTA 142 Score = 29.9 bits (67), Expect = 0.012 Identities = 18/122 (14%), Positives = 28/122 (22%), Gaps = 1/122 (0%) Query: 189 QAPAEPVAEAISEAAPAAAAGAPVQQAPAQAEAAAPTTAAPAAPATPAAPVAQAAPVAPA 248 + PA +++ APA Q P + P APV P Sbjct: 42 ELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 249 ASVPAIASEPAAVPAGSAKVAIQFTADCWTQVSDGNGKVLFSAIKRKGDNLELTGKPPFA 308 P + P K A + + + + P Sbjct: 102 KPKP-KPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRAL 160 Query: 309 VR 310 R Sbjct: 161 SR 162
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 104 bits (261), Expect = 2e-26 Identities = 79/365 (21%), Positives = 137/365 (37%), Gaps = 60/365 (16%) Query: 22 VGIDLGTTNSLVAALRSGRSEPLPDAQGNVILPSAVRYLAGHNEVGLAAREAAASDPLNT 81 + IDLGT N+L+ G + PS V A R+ A P + Sbjct: 13 LSIDLGTANTLIYVKGQGIV---------LNEPSVV-----------AIRQDRAGSP-KS 51 Query: 82 VLSV----KRLMGRGLADVKQLGEQLPYRFIGGESHMPFIDTVQGPKSPVEVSADILK-V 136 V +V K+++GR ++ + P D V V+ +L+ Sbjct: 52 VAAVGHDAKQMLGRTPGNIAAI--------------RPMKDGVIAD---FFVTEKMLQHF 94 Query: 137 LRERAEATLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLD 196 +++ + ++ VP +R+A +++A+ AG + L+ EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 197 QNAEGLVAIYDLGGGTFDISILRLTAGVFEVLATGGDTALGGDDFDHAIASWIIEQAGLS 256 + + D+GGGT +++++ L V +GGD FD AI +++ G Sbjct: 155 VSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYGSL 209 Query: 257 ADLDPATQRQL-LQAACAAKEALTDTDVVS----VSHGAWQGEL-SRAAFEAMIEPLIAR 310 + AT ++ + A V L S EA+ EP + Sbjct: 210 --IGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP-LTG 266 Query: 311 SLKACRRAVRDSGVEL--DEVGA-VVMVGGSTRVPRVREAVGTLFGRTPLTSIDPDQVVA 367 + A A+ EL D +V+ GG + + + G + + DP VA Sbjct: 267 IVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVA 326 Query: 368 IGAAI 372 G Sbjct: 327 RGGGK 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 374 bits (962), Expect = e-127 Identities = 134/369 (36%), Positives = 193/369 (52%), Gaps = 17/369 (4%) Query: 164 ERIEHLALRAEDEHQRAEIYRQASGQD-KELIGQSPAHKRLLDEIRLVGGSDLTVLITGE 222 + + RA E +R + QD L+G+S A + + + + +DLT++ITGE Sbjct: 109 TELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGE 168 Query: 223 TGVGKELVAQALHQASHRANKPLISLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFE 282 +G GKELVA+ALH R N P +++N AA+P L+ESELFGH +GAFTGA G+FE Sbjct: 169 SGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFE 228 Query: 283 LANGGTLFLDEVGELPLAVQAKLLRVLQSGQLQRLGSDREHTVDVRLIAATNRDLAAEVR 342 A GGTLFLDE+G++P+ Q +LLRVLQ G+ +G DVR++AATN+DL + Sbjct: 229 QAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSIN 288 Query: 343 NGNYRADFYHRLSVYPLQVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSNEAQSALL 402 G +R D Y+RL+V PL++PPLR+R D+ L +F++Q + GL+ R EA + Sbjct: 289 QGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMK 347 Query: 403 AYDWPGNVRELEHLIGRSALKALGQHPDRPRIL---------------TLQASDLDLRTV 447 A+ WPGNVRELE+L+ R R I ++ L + Sbjct: 348 AHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQA 407 Query: 448 AGGVQAPSPAPLPAPSLAEGGLREAVDGYQRQIIDACLQRHQDNWAAAARELGLDRANLN 507 A G + + +I A L + N AA LGL+R L Sbjct: 408 VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR 467 Query: 508 RLARRLGLR 516 + R LG+ Sbjct: 468 KKIRELGVS 476
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 45.0 bits (106), Expect = 8e-06 Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 24/126 (19%) Query: 3771 EVIAGTDGNDQLDGSQG--------GQISLQGGSGDDTLVVVDQAFAS--VDGGSGTDTL 3820 + ++G +G+DQL G G G L GG GDD V + A + GG G D L Sbjct: 765 DTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKL 824 Query: 3821 LWGGGDASIDLGSLAGRVHDIEIIDLNDTSGVTLTLNLADVVAVTESGSSTLLIKGDDKD 3880 G DL ++ ND ++ G + G +D Sbjct: 825 Y---GSEGADLLDGGEGDDLLKGGYGNDI-----------YRYLSGYGHHIIDDDGGKED 870 Query: 3881 SVHMTD 3886 + + D Sbjct: 871 KLSLAD 876 Score = 37.6 bits (87), Expect = 0.001 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 11/63 (17%) Query: 3771 EVIAGTDGNDQLDGSQGGQISLQGGSGDDTLVVVDQAFASVDGGSGTDTLLWGGGDASID 3830 ++I G DGND+L G +G L GG+GDD L GG G D L+ G+ ++ Sbjct: 747 DLIEGNDGNDRLYGDKGNDT-LSGGNGDDQL----------YGGDGNDKLIGVAGNNYLN 795 Query: 3831 LGS 3833 G Sbjct: 796 GGD 798
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 577 bits (1488), Expect = 0.0 Identities = 215/566 (37%), Positives = 337/566 (59%), Gaps = 14/566 (2%) Query: 399 RIQAVAAAPGIASGPAHVCVERDID-YPLRGESPAQERVKLGRALDTVNAELQALVQRSD 457 +I +AA+ G+A A + +E ++D + E KL AL+ EL+A+ +++ Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTE 63 Query: 458 KAVGE----IFVTHQEMLADPALADDVELRL-AQGESAAAAWMAVIEAAARQQEALHDAL 512 ++G IF H +L DP L D ++ ++ + +A A V + E++ + Sbjct: 64 ASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEY 123 Query: 513 LAERAADLRDIGRRVLAQLCGVQTQ--AEPEQPYVLVMGEVGPSDVARLDPARVAGIVTA 570 + ERAAD+RD+ +RVL L GV+T A + V++ ++ PSD A+L+ V G T Sbjct: 124 MKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATD 183 Query: 571 HGGATAHSAIVARALGIPAVVGAGAAILLLEPGTPLLLDGQRGVVSVAPPADELQRALAE 630 GG T+HSAI++R+L IPAVVG ++ G +++DG G+V V P +E++ + Sbjct: 184 IGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEK 243 Query: 631 RDLREQRLQAAWANRHEPAVTRDGHAVEVFANIGQSGGIDKVVEQGAEGVGLLRTELIFM 690 R E++ Q EP+ T+DG VE+ ANIG +D V+ G EG+GL RTE ++M Sbjct: 244 RAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYM 303 Query: 691 GHSQAPDVATQEAEYRRVLDGLGGRPLVVRTLDVGGDKPLPYWPIAAEENPFLGVRGVRL 750 Q P Q Y+ V+ + G+P+V+RTLD+GGDK L Y + E NPFLG R +RL Sbjct: 304 DRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIRL 363 Query: 751 TLQRPQIMEDQLRALLRAADQRPLRIMFPMVGQVHEWREARAMVERLREEI------PVA 804 L++ I QLRALLRA+ L++MFPM+ + E R+A+A+++ ++++ Sbjct: 364 CLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSD 423 Query: 805 DLQLGIMVEVPSAALLAPQLAREVDFFSIGTNDLTQYTLAIDRGHPSLSAQADGLHPAVL 864 +++GIMVE+PS A+ A A+EVDFFSIGTNDL QYT+A DR + +S HPA+L Sbjct: 424 SIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAIL 483 Query: 865 SLIDMTVRAAHAEGKWVGVCGELAADPQAVAVLLGLDVDELSVAARSVAEVKALVRQADH 924 L+DM ++AAH+EGKWVG+CGE+A D A+ +LLGL +DE S++A S+ ++ + + Sbjct: 484 RLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSK 543 Query: 925 QTARALAREALQQDSAAAVRALVERY 950 + + A++AL D+A V LV++ Sbjct: 544 EELKPFAQKALMLDTAEEVEQLVKKT 569
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 3e-07 Identities = 74/362 (20%), Positives = 140/362 (38%), Gaps = 23/362 (6%) Query: 6 LVGLLFAVSVVGFSLGASLPLVSLRLHE---AGAGTLQIGIISAIPAAGMMLSAFMVDAC 62 L+ +L V++ +G +P++ L + + T GI+ A+ A A ++ A Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 63 CRYLTRRTIYLLCFSLCTVSIALLESAFDSVWMLALLRLGLGV-GMGIAIILGESWVNEL 121 RR + L+ + V A++ +A +W+L + R+ G+ G A+ +++ ++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATA-PFLWVLYIGRIVAGITGATGAVAG--AYIADI 123 Query: 122 CPDHNRGKIMALYATSFTGFQVLGPA---MLAVIGANSPWITGVVTFCYGLALLCIVLTV 178 R + + F V GP ++ ++P+ C +L Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE 183 Query: 179 PNDHVEHGEEGEKSFGLAGFFRVAPALCVAVLFFSFFDAVVLSLLP----VYATSHGFA- 233 + E LA F VA L FF ++ +P V F Sbjct: 184 SHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHW 243 Query: 234 -VGVAALMVTVVFAGDMVFQLPL-GWLADRV-ERTGLHLVCGLVAMAIGIALPWLLQMTW 290 + + + Q + G +A R+ ER L L G++A G L W Sbjct: 244 DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML--GMIADGTGYILLAFATRGW 301 Query: 291 LLWPLLVVLGAVAGGIYTLAL-VLIGQRFKGQDLVTANASVGLLWGVGSLVGPLVSGAAM 349 + +P++V+L +GGI AL ++ ++ + S+ L + S+VGPL+ A Sbjct: 302 MAFPIMVLLA--SGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359 Query: 350 DV 351 Sbjct: 360 AA 361 Score = 29.0 bits (65), Expect = 0.033 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 14/175 (8%) Query: 207 VAVLFFSFFDAV----VLSLLPVYATSHGFAVGVAALMVTVV--FAGDMVFQLP-LGWLA 259 + +L DAV ++ +LP + V A ++ +A P LG L+ Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 260 DRVERTGLHLVCGLVAMAIGIALPWLLQMTWLLWPLLVVLGAVAGGIYTLALVLIGQRFK 319 DR R L+ L A+ A+ W+L+ + ++ + G +A I Sbjct: 68 DRFGRR-PVLLVSLAGAAVDYAIMATAPFLWVLY-IGRIVAGITGATGAVAGAYIADITD 125 Query: 320 GQDLVTANASVGLLWGVGSLVGPLVSGAAMDVAPHGLPM----ALAIMAGLFVCF 370 G + + +G G + GP++ G +PH P AL + L CF Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPH-APFFAAAALNGLNFLTGCF 179
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.4 bits (105), Expect = 5e-07 Identities = 44/178 (24%), Positives = 65/178 (36%), Gaps = 2/178 (1%) Query: 22 MRIIAFCALAHLINDLIQSVLPAIYPMLKAN-YDLSFTQIGLITLTFQITASLLQPWV-G 79 M ++A I L+ V A++ + + + T IG+ F I SL Q + G Sbjct: 209 MTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 80 FFTDRRPTPNLLPLGTLCTLVGIIMLAFVGSFPMILLASALVGIGSSTFHPETSRIARLA 139 R L LG + G I+LAF M L+ G + ++R Sbjct: 269 PVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQV 328 Query: 140 SGGRFGLAQSTFQVGGNAGSAFGPLLAAAIVIPFGQTHVAWFGVAGLLFFAVTLMLRR 197 R G Q + + S GPLL AI T W +AG + + L R Sbjct: 329 DEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALR 386 Score = 35.6 bits (82), Expect = 3e-04 Identities = 49/270 (18%), Positives = 97/270 (35%), Gaps = 14/270 (5%) Query: 37 LIQSVLPAIYPMLKANYDLSFTQIGLITLTFQITASLLQPWVGFFTDRRPTPNLLPLGTL 96 LI VLP + L + D++ G++ + + P +G +DR +L + Sbjct: 23 LIMPVLPGLLRDLVHSNDVTAH-YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 97 CTLVGIIMLAFVGSFPMILLASALVGIGSSTFHPETSRIARLASGGR----FGLAQSTFQ 152 V ++A ++ + + GI +T + IA + G FG + F Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFG 141 Query: 153 VGGNAGSAFGPLLAAAIV-IPFGQTHVAWFGVAGLLFFAVTLMLRRWYTEHLNQAKARKV 211 G AG G L+ PF A + GL F +L + + R+ Sbjct: 142 FGMVAGPVLGGLMGGFSPHAPF----FAAAALNGLNFLTGCFLLPESHKGERRPLR-REA 196 Query: 212 VQAIHGISRKRVIAALIVLGLLVFSKYFYMASFTSYFTFYLIEKFDLSVASSQLHLFLF- 270 + + R + + L + F + + + ++F + + L F Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFG 256 Query: 271 -LGAVAAGTFFGGPIGDRIGRKAVIWFSIL 299 L ++A GP+ R+G + + ++ Sbjct: 257 ILHSLAQAMIT-GPVAARLGERRALMLGMI 285 Score = 31.7 bits (72), Expect = 0.005 Identities = 21/90 (23%), Positives = 35/90 (38%) Query: 280 FGGPIGDRIGRKAVIWFSILGVAPFTLALPYADLFWTTVLSVVIGFILASAFSAIVVYAQ 339 G + DR GR+ V+ S+ G A + A W + ++ I + + Y Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA 121 Query: 340 ELVPGSVGMIAGVFFGLMFGFGGIGAALLG 369 ++ G F FGFG + +LG Sbjct: 122 DITDGDERARHFGFMSACFGFGMVAGPVLG 151
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.1 bits (65), Expect = 0.022 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 243 ALDVPLGQVIERLASYQGRRVWMMDEQAANRRVSGDFNLDRSGATLDALAAEQRLQVY 300 A L ++ + V + D+ N +VSG F D L +A+ L Y Sbjct: 40 AKGESLRDLLTDFGANYDATVVVSDK--INDKVSGQFEHDNPQDFLQHIASLYNLVWY 95
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 3e-04 Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 64 DEAHLLNITVKPENQGRGLGLRLLEHLMARAYQLNGRECFLEVRASNQSAYRLYERYGF 122 A + +I V + + +G+G LL + A + + LE + N SA Y ++ F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.7 bits (74), Expect = 0.001 Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 5/97 (5%) Query: 22 YLSAMQVVHWLPRAELPFAAPSRPELLLPQVPVEQAAFEVRPSPAPANEAPVAPQARSGE 81 Y S QV+ LP P + L Q E P P E P + Sbjct: 29 YTSVHQVIE-LPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP----K 83 Query: 82 RPKIEIPRPGNAPKPTAKPVEAEEQAPAPRPAPVPPP 118 + I +P PKP KPV+ ++ P PV Sbjct: 84 EAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.6 bits (84), Expect = 5e-04 Identities = 49/281 (17%), Positives = 94/281 (33%), Gaps = 14/281 (4%) Query: 335 KHRFALVDDVKVLEQQLLAAKDAHDELAGALAQSRQFSAEDLDERVRDLEKRLKQVKQQL 394 K D++ +D+ A Q + + LE + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 395 DHADNNSYARLREEFSQADVDRLMRLFNGALFSLPLGERGIELDDSDLWVKSLEAVLDGF 454 + +AD+++ + + + +E + + L ++ +A L+ Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL--EARQAELEKA 198 Query: 455 KGERFEAPGISIDLSHIDPPALQALADRAALRDQKDRLERELKQLKTQQSVAADRTASK- 513 A++AAL +K LE+ L+ + + + + Sbjct: 199 LEGAMNFSTADSAKIK------TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLE 252 Query: 514 AQTEALYQQVLDAQKALEDYRRSETLAAEEPEKMEQ-LAQLEAAQDELKRSSDAFTERVQ 572 A+ AL + + +KALE T + + + +E A LEA + +L+ S Q Sbjct: 253 AEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQ 312 Query: 573 QLSAKLQLVGRQIADLEAKQRTLEDAL----RRRQLLPADL 609 L L LEA+ + LE+ RQ L DL Sbjct: 313 SLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353 Score = 36.2 bits (83), Expect = 6e-04 Identities = 67/315 (21%), Positives = 106/315 (33%), Gaps = 30/315 (9%) Query: 280 EYAMARKEELVIQAEHYRGEQDRLQNDQRGGTQELMRLEREITGIQRWLGELSVLKHRFA 339 E AM + + E+ L+ Q + L T + L K A Sbjct: 165 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKA--A 222 Query: 340 LVDDVKVLEQQLLAAKDAHDELAGALAQSRQFSAEDLDERVRDLEKRLKQVKQQLDHADN 399 L LE+ L A + + + L+ R +LEK L+ Sbjct: 223 LAARKADLEKALEGAMNFSTADSAKIKTLEA-EKAALEARQAELEKALEGAMNFSTADSA 281 Query: 400 NSYARLRE-EFSQADVDRLMRLFNGALFSLPLGERGIELDDSDLWVKSLEAVLDGFKGER 458 E +A+ L + R +LD S K LEA + Sbjct: 282 KIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR--DLDASREAKKQLEAEHQKLE--- 336 Query: 459 FEAPGISIDLSHIDPPALQAL-ADRAALRDQKDRLERELKQLKTQQSVAADRTASKAQTE 517 E IS + Q+L D A R+ K +LE E ++L+ Q ++ AS+ Sbjct: 337 -EQNKIS-------EASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS---EASRQSLR 385 Query: 518 ALYQQVLDAQKALEDYRRSETLAAEEPEKMEQLAQLEAAQDELKRSSDAFTERVQQLSAK 577 +A+K +E E +LA LE EL+ S + +L AK Sbjct: 386 RDLDASREAKKQVE---------KALEEANSKLAALEKLNKELEESKKLTEKEKAELQAK 436 Query: 578 LQLVGRQIADLEAKQ 592 L+ + + + AKQ Sbjct: 437 LEAEAKALKEKLAKQ 451
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.3 bits (102), Expect = 8e-07 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 19/147 (12%) Query: 124 TLRTLVDLGV---------VPVINENDTVVTDEIRFGDNDTLAALVANLVEADLLVILTD 174 T++ LV+ GV VPVI E+ + E D D +A V AD+ +ILTD Sbjct: 178 TIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTD 236 Query: 175 RDGMFDADPRNNPEAQLIYEARADDPSLDAVAGGTGGALGRGGMQTKLRAARLAARSGAH 234 +G + Q + E + ++ G G M K+ AA G Sbjct: 237 VNGAALY--YGTEKEQWLREVKVEELRKYYEEGH----FKAGSMGPKVLAAIRFIEWGGE 290 Query: 235 TIIIGGRIERVLDRLKAGERLGTLLSP 261 II +E+ ++ L G+ GT + P Sbjct: 291 RAII-AHLEKAVEAL-EGKT-GTQVLP 314
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.016 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 32/168 (19%) Query: 245 VDLAPLDGSSPADAAEVIINELT-----RFSPSLTDRE-------RWLVLNKA----DML 288 V + S AD AE E+T R SL R+ V + + Sbjct: 39 VQIVSGTLQSIADMAE----EVTFVFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKV 94 Query: 289 MDDERDERVKEVVERLQWEGPVYVISAIAKQGTEQLTHDLMR-YIEDRA--DRLANDPAY 345 + E+ + V E++ L P +S + K E + + + D L P Sbjct: 95 PELEQKQNVSELLSLLS-NSPNISLSQL-KAYLEGKSEEPSEQFKMLCGLRDALKGRPEL 152 Query: 346 AEELADLDQRIED-------EARAQLQALDDARTLRRTGVKSVHDIGD 386 A ++Q + + +A ++GV + + D Sbjct: 153 AHLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRD 200
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.1 bits (65), Expect = 0.038 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 8/193 (4%) Query: 189 SHSDATLPYRSGRAWLLLLFFGIGTGAYTLVLAWLPPFYVELGWTATQAGYLLGALTVTE 248 S+S + L + WL +L F L ++ LP + ++ A +T Sbjct: 4 SYSQSNLRHNQILIWLCILSFFSVLNEMVLNVS-LPDIANDFNKPPASTNWVNTAFMLTF 62 Query: 249 VIAGLLVSALIQRYPGRRQPLTVVILLLLAGLACLM-LAPVQLAVVATLCLGLGIGALFP 307 I + L + +R L +I+ + + + L ++A G G A FP Sbjct: 63 SIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAG-AAAFP 121 Query: 308 LSLIVTLDHTHSPTEAGALLAFVQGGGYLIAATMPLIAGIVRDQLSSLHWAW--GIMAIG 365 ++V + G + + P I G++ +HW++ I I Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMI---AHYIHWSYLLLIPMIT 178 Query: 366 AVLLLGLSTLLRP 378 + + L LL+ Sbjct: 179 IITVPFLMKLLKK 191
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.028 Identities = 75/415 (18%), Positives = 129/415 (31%), Gaps = 45/415 (10%) Query: 39 LFLAYLLAFLDRINVGYAKLQMSA---DLGFSEAV---YGLGAGIFFISYLLFEVPSNMW 92 L + LD + +G + DL S V YG+ ++ + Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 93 LERVGVRITLLRIMVLWGLVSASTMLVKTPEQFYFVRLLLGVCEAGFFPGIILYLTYWFP 152 +R G R LL + + A Y R++ G+ A Y+ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITD 125 Query: 153 STRRGKVTGQFMFAIPVAGIIGGPLSGWIMQSMNGVSGLSGWQWMFLIEGLPTVLLGCFC 212 R + G FM A G++ GP+ G G+ G F L Sbjct: 126 GDERARHFG-FMSACFGFGMVAGPVLG-------GLMGGFSPHAPFFAAAALNGLNFLTG 177 Query: 213 YLLLANRPSEARWLSDAEKQVVADAMAKDSDASVEKGHVGALSKLRLALGDSKVWLLAFI 272 LL S ++ + L+ R A G + V L + Sbjct: 178 CFLL--PESHKGERRPLRREA-----------------LNPLASFRWARGMTVVAALMAV 218 Query: 273 YFTTACANYTF-TFWLPTIIKNLGVNDVSHIGALSAIPYVFAALGVLFVSASSDRLKERR 331 +F W+ + + +L+A + + + + RL ERR Sbjct: 219 FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERR 278 Query: 332 WHVGGSLILGAIGLATTPFLNNSLVATIAVLSFVGFFQFGAGI-AYWAIPSTYLNKATAA 390 + +I G F +A ++ G G+ A A+ S +++ Sbjct: 279 A-LMLGMIADGTGYILLAFATRGWMAFPIMVLLAS---GGIGMPALQAMLSRQVDEERQG 334 Query: 391 VGIGLVSSIGVVGGFVSPALLGFIKELTGSLDNGIFTISLLMLAGGLAILLALPA 445 G ++++ + V P L I + + NG +AG LL LPA Sbjct: 335 QLQGSLAALTSLTSIVGPLLFTAIYAASITTWNG-----WAWIAGAALYLLCLPA 384
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 55.3 bits (133), Expect = 1e-12 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 1 MKGQRGITLIELMIVVAIIGILATIAIPMYTNHQSRTKAAAGLLEISALKTAMDL-RLNE 59 QRG TL+E+M+V+ IIG+LA++ +P ++ + + +I AL+ A+D+ +L+ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDN 63 Query: 60 GK 61 Sbjct: 64 HH 65
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 419 bits (1078), Expect = e-147 Identities = 129/405 (31%), Positives = 204/405 (50%), Gaps = 10/405 (2%) Query: 7 LYAWQGIDANGAEVRGQMAGRSPAYVRAGLQRQGIRVASLRPA---------GGLVWRWP 57 Y +Q +DA G + RG S R L+ +G+ S+ GL R Sbjct: 3 QYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRK 62 Query: 58 ARRAKSDPAGFSRQLATLLRAGVPLLQAFQVMGRSGCSAAQAALLERLKQDVAAGLGLAD 117 R + SD A +RQLATL+ A +PL +A + + + L+ ++ V G LAD Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 118 ALQRHPQWFDGLYCNLVRVGEQSGTLDRQLEQLAGMLEQRQALLKRVRKAMLYPLLLLLT 177 A++ P F+ LYC +V GE SG LD L +LA EQRQ + R+++AM+YP +L + Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 178 GLGVSAVLLLEVIPRFESLFAGFDAALPAFTQWVIDLSTGLGRHGPLLLITLLVVALGMR 237 + V ++LL V+P+ F ALP T+ ++ +S + GP +L+ LL + R Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFR 242 Query: 238 QLYRQHAPARLWISCQVLRLPVFGRLLGQAALARFARSLATAYAAGVPLLDGLGTVARAC 297 + RQ R+ ++L LP+ GR+ AR+AR+L+ A+ VPLL + Sbjct: 243 VMLRQE-KRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVM 301 Query: 298 GGELHERAILRLRQGMANGQGLHQAMAAEPLFPPLLVQLTAIGESSGTLDQMLEKAASLY 357 + + + G LH+A+ LFPP++ + A GE SG LD MLE+AA Sbjct: 302 SNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADNQ 361 Query: 358 EEQVSQALDQLTSLLEPAIVLVLGLLVGGLVVAMYLPIFQLGSLI 402 + + S + L EP +V+ + +V +V+A+ PI QL +L+ Sbjct: 362 DREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 1e-04 Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 119 KMMNHIEADVGGVIDAILVEDGQPVEFDQPLFTI 152 K + IE ++ I+V++G+ V L + Sbjct: 97 KEIKPIE---NSIVKEIIVKEGESVRKGDVLLKL 127
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 106 bits (265), Expect = 1e-33 Identities = 46/73 (63%), Positives = 59/73 (80%) Query: 33 QTLRDSVEKALHNYFAHLEGATVTDVYNLVLSEVEAPLLESVMNYVKGNQTKASEMLGLN 92 + LRDSV++AL NYFA L G V D+Y LVL+EVE PLL+ VM Y +GNQT+A+ M+G+N Sbjct: 25 KPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGIN 84 Query: 93 RGTLRKKLKQYDL 105 RGTLRKKLK+Y + Sbjct: 85 RGTLRKKLKKYGM 97
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 1e-15 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 8/131 (6%) Query: 641 ARVLVVDDNDTCRKVLVQQCSAWGMNVSAVPSGKEALALLRTKAHLRDYFDAVLLDQNMP 700 A +LV DD+ R VL Q S G +V + + D V+ D MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-----AGDGDLVVTDVVMP 58 Query: 701 GMTGMQLAAKIKEDPSLNHDILVVMLTGISNAPSKVIARNAGVKRILAKPVAGYTLKTTL 760 L +IK+ D+ V++++ + + + A G L KP L + Sbjct: 59 DENAFDLLPRIKK---ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 761 AEELAQRGREQ 771 LA+ R Sbjct: 116 GRALAEPKRRP 126 Score = 64.9 bits (158), Expect = 8e-13 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 791 RVLVAEDNSISTKVIRGMLGKLNLEPDTASNGEEALQAMKAQRYDLVLMDCEMPVLDGFS 850 +LVA+D++ V+ L + + SN + + A DLV+ D MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 851 ATQQLRAWEVANQRQRTPVVALTAHILAEHKERARLAGMDGHMAKPVELSQLRELIQ 907 +++ R PV+ ++A +A G ++ KP +L++L +I Sbjct: 65 LLPRIKKA-----RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 27.9 bits (62), Expect = 0.038 Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 33 VVAYFVAKGKRGNAFGIIESHLQPAQTLLPLV 64 VVA ++ K RG AFG+I S + + + P + Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.9 bits (64), Expect = 0.042 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 25/102 (24%) Query: 284 IEADEGRQGFIEYNRDALGVPGLQL-------VRGKAPQALAELERPDAIFIG----GGV 332 I D+G G E + G+++ + K PQ A + PD IF GG Sbjct: 37 INGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGY 96 Query: 333 TREGVL--------------PLCWERLRPGGRLVANAVTLQS 360 + G+L P W+ +R G+L+A + +++ Sbjct: 97 AQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEA 138
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.5 bits (60), Expect = 0.021 Identities = 14/50 (28%), Positives = 23/50 (46%) Query: 70 LDYDSHAAEHSGQLRSELAKAGTPIGPFDQLIAGHARARGLTLVTNNLRE 119 L + + +++EL KA +GP L R LT+V N L++ Sbjct: 80 LQFRDAEKKLEASVQAELDKADAALGPAKNLAPLDVINRSLTIVGNALQQ 129
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.0 bits (62), Expect = 0.016 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Query: 1 MKPMLALLSLLALPVMA-AEPTLYG 24 MK L L+L ALPV A A+ TLYG Sbjct: 1 MKKSLIALTLAALPVAAMADVTLYG 25
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 27.6 bits (61), Expect = 0.044 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Query: 102 LARNNLSSDDYGQLTQAVPGLDLLSG-----AAMLGGLSGLGEM---LGKSSQNQSALSN 153 L + S + A ++L++ A++ ++ + LG N L+ Sbjct: 165 LIKKQKSGGNVSSSELAKASIELINQLVDTVASLNNNVNSFSQQLNTLGSVLSNTKHLN- 223 Query: 154 ALGNNVENRSDLDNAFKALGMDTGMI-GQFAPLIL 187 +GN ++N +LDN L +G++ A IL Sbjct: 224 GVGNKLQNLPNLDNIGAGLDTVSGILSAISASFIL 258
>INTIMIN#Intimin signature. Length = 939 Score = 26.6 bits (58), Expect = 0.007 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Query: 2 NTASETALRPSAVNHQALKTLAHWLKHHGSNRV 34 + A +TAL +QA L WL+H+G+ V Sbjct: 185 DYAKDTAL--GIAGNQASSQLQAWLQHYGTAEV 215
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 31.7 bits (72), Expect = 0.004 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 15/81 (18%) Query: 281 ECAGVDHVVGSQER--DPSVRLAGSYVNFLIVNGGIIAPSFNDPADAQARAILAKVFPDH 338 +CAG D + G++E+ D + LA I G IIA S N + KV Sbjct: 334 KCAGGDLIHGAREQWNDGANVLA-------IAPGEIIAYSRNHVTNKLFEENGIKVHR-- 384 Query: 339 EVVMIPGRELLLGGGNIHCLT 359 IP EL G G C++ Sbjct: 385 ----IPSSELSRGRGGPRCMS 401
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 30.6 bits (68), Expect = 0.029 Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 7/136 (5%) Query: 1 MPLSTLIQRSSLP---SPSLSEAQAHALLQAHYDLAGSLSRLGSQQDLNLRL---DTGQE 54 PL T Q LP +P LS Q SL QQ LRL D G+ Sbjct: 212 SPLITPHQTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEV 271 Query: 55 RFVLKVCHGNYAQMELEAQHAALAYLREQGLPVPAVRPARDGQSLLALNIDGQPLRARLL 114 + LKV N AQ+++ + H + E LPV + A G L NI G+ + Sbjct: 272 QISLKV-DDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQ 330 Query: 115 DYIEGQPLTRLKHMQP 130 + Q R + +P Sbjct: 331 AASQQQQSQRTANHEP 346
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 34.8 bits (80), Expect = 6e-05 Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 15 ALLRQLPSRSPGITSAELVWRLRDVGFTVSKRTVERDLNELSLI 58 +R++ + + T ELV L+ G+ V++ TV RD+ EL L+ Sbjct: 8 IKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLV 51
>PF06872#EspG protein Length = 398 Score = 28.1 bits (62), Expect = 0.042 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 187 GNWRPTLSAEQLAQVQE---VVHPVVRTHPENGRKALFVSEGFTTRI 230 G W P S ++ Q Q V+ PV H E GR S+G + RI Sbjct: 61 GLWNPKYSQDERQQFQGLLTVLEPVSPAHNELGRVYAKFSDGSSLRI 107
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 83.5 bits (206), Expect = 8e-18 Identities = 51/217 (23%), Positives = 75/217 (34%), Gaps = 26/217 (11%) Query: 5733 GNDTVNGGDGNDIIFG----DLLTFSTVAGTG---VEAIQGYVANKLGVDAGDVDARAMH 5785 N D L FS G + ++ ++ G Sbjct: 269 SVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVG-- 326 Query: 5786 KYINEHYTEFDVAGSNDGADTLMGGAGNDILFGQGGNDTLDGGKGNDMLLGGTGNDTLIG 5845 + +GG+GNDIL G ++ L GG GND+L GG G DTL G Sbjct: 327 -----GLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYG 381 Query: 5846 GQGNDMLIGGSGADTFVWKSGDIGSDVIKDFKVSEGDRLDLRDLLQGEKASTIDNFLKIT 5905 G G D + GSG D+ V D I DF D++DL + S + + T Sbjct: 382 GAGRDTFVYGSGQDSTVA-----AYDWIADF-QKGIDKIDLSAFRNEGQLSFVQ--DQFT 433 Query: 5906 TVDGSSTLQVSTEGKL----NAAGGLANADVSIKLEG 5938 LQ + G ++ D +++ G Sbjct: 434 GKGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVG 470
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 314 bits (806), Expect = e-105 Identities = 107/426 (25%), Positives = 203/426 (47%), Gaps = 9/426 (2%) Query: 41 PRIVRLTIWGIIAFFLVMIIWASVAPIDEVTRGEGKAIPSSKVQKIQNLEGGIVAQIYAK 100 R RL + I+ F ++ I + + ++ V GK S + ++I+ +E IV +I K Sbjct: 54 SRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 101 EGQIVEVGEPLLRLDETRFASNVGETEADRLAMALRVQRLSAEVD----DKPLQI----D 152 EG+ V G+ LL+L ++ +T++ L L R +K ++ + Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 153 EELRKAAPSQAASEQSLYQSRRQQLHDEISGLEQQLVQKQQELREFTSKRAQYANSLQLL 212 + + + SL + + ++ E L +K+ E ++ +Y N ++ Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 213 RQEIAMSEPLVAQGAISQVEVLRLRRAEVENRGQMDSTALAIPRAEAAIKEVQSKIEETR 272 + + L+ + AI++ VL VE ++ + + E+ I + + + Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 273 GKFRSEALTQLNEARTELNKATATGKALDDRVNRTMVSSPVRGIVKQLLVNTVGGVIQPG 332 F++E L +L + + T ++R +++ +PV V+QL V+T GGV+ Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 333 SDIVEIVPLDDSLVVEAKILPKDIAFLHPGQEATVKFTAYDYTIYGGLKATLEQIGADTI 392 ++ IVP DD+L V A + KDI F++ GQ A +K A+ YT YG L ++ I D I Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413 Query: 393 TDEDKKTTYYLIKLRTEKSHLGTDEKPLLIIPGMVATVDIMTGKKTIMSYLLKPIMKARA 452 D+ + + + + E++ L T K + + GM T +I TG ++++SYLL P+ ++ Sbjct: 414 EDQ-RLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVT 472 Query: 453 EALRER 458 E+LRER Sbjct: 473 ESLRER 478
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.047 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Query: 139 KAVLLAAHHYPRFMPMLMTAAGTVKAARVLIL--GAGVAGLQAIATA 183 +A L+A R P+LMT+ + L + GAG A+ Sbjct: 961 EATLMAVRM--RLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 31.8 bits (72), Expect = 0.009 Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 23/120 (19%) Query: 164 ELQARLKRANQLNSELQQLEKKDIGAINHGLERLRLQGRKLELEGKLDATAQADIDAERA 223 + + R +S+LQ++ R + L L DI Sbjct: 289 YAKDKSDRLKSKSSDLQKIVMN---------NINRCTKKDKILNNTLKKCEDKDIFKLYG 339 Query: 224 ELNSRYKAIEDRLSSLHQAFSRDSLVA----RDGNGREVEINLSKVVHAIQPNAMSGFTK 279 EL + ++ S + N V+I L + Q N S + K Sbjct: 340 ELLTAN---------IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQ-NVQSYYKK 389
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 3e-20 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 4/131 (3%) Query: 1 MSKVNVLVVDDAPFIRDLVRKCLRNAFPGMVIEDAVNGRKAMTMLGKETFDLVLCDWEMP 60 M+ +LV DD IR ++ + L A G + N + DLV+ D MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRA--GYDVRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 EMSGLELLTWCRQQPEMKNLQFIMVTSRGDKENVIQAIQAGVSDFVGKPFTNEQLLTKVK 120 + + +LL ++ +L ++++++ I+A + G D++ KPF +L+ + Sbjct: 59 DENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 121 KALTKIGKLES 131 +AL + + S Sbjct: 117 RALAEPKRRPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 33.3 bits (76), Expect = 0.002 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 25/99 (25%) Query: 329 LVFNAVKY----TRDEGNIRIRWWADDQGAHLSVQDSGVGIDAKHLPRLTERFYRVDSSR 384 LV N +K+ G I ++ D+ L V+++G + K+ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKE------------ 309 Query: 385 ASNTGGTGLGLAIVKH---VLMRHRGRLEISSVPGHGST 420 TG GL V+ +L ++++S G + Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 97.2 bits (242), Expect = 1e-25 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 1 MVGRNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGT 60 M G IL+ DD+A IR ++ AL AGYD N+ I DL++ D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 + +L R+K + D+P+++++A+ I+ E GA DY+ KPF EL+ + Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 121 L---RRAGPSDSEAPIEVGGLL 139 L +R + + L+ Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLV 140
>PERTACTIN#Pertactin signature. Length = 922 Score = 28.5 bits (63), Expect = 0.019 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 13/92 (14%) Query: 31 LFDEG------SLTRRLTRLSHDHFSVTPLFEGWQALRDDECLALGIA-PGAEGWVREVY 83 LFDEG ++T + +L DH ++ + + DD+ +AL +A A+ + + Sbjct: 101 LFDEGVRRFLGTVTVKAGKLVADHATLANVSDTR----DDDGIALYVAGEQAQASIADST 156 Query: 84 LRGHGQPWV--FARSVASRSALERGGLHLETL 113 L+G G V A RS + GGLH+ TL Sbjct: 157 LQGAGGVRVERGANVTVQRSTIVDGGLHIGTL 188
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 97.1 bits (242), Expect = 3e-30 Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%) Query: 3 KPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTGKN 61 K +L A +AE +LTK+ + ++A+ +++ L K + V L+GFG FE R R AR G+N Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 62 PQTGEPVKIKASNTVAFKPGKNLRESV 88 PQTGE +KIKAS AFK GK L+++V Sbjct: 64 PQTGEEIKIKASKVPAFKAGKALKDAV 90
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 40.8 bits (95), Expect = 2e-06 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 8 RLNKDDAVVLLVDHQTGLISLVQDFSP--NEFKNNVLALGDLAKFFGLPTILTTS-FEQG 64 + + AV+L+ D Q + + E N+ L + G+P + T Q Sbjct: 25 VPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQN 84 Query: 65 PNGPLV------PELKEMFPDAPYIAR----PGQI-------NAWDNEDFVKAIKATGRK 107 P+ + P L + I + +A+ + ++ ++ GR Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRD 144 Query: 108 QLIIAGVVTDVCVAFPTLSALAEGFEVFVVTDASGTFNQ 146 QLII G+ + A E + F V DA F+ Sbjct: 145 QLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL 183
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 3e-06 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 32/190 (16%) Query: 1503 EAIAGLEDIRNDSERAANIVRALRSLAKQT--PMQLKTVKLDE--------LILEVVRLT 1552 I L I D +A ++ +L L + + + V L + L L ++ Sbjct: 180 NNIRAL--ILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQF- 236 Query: 1553 SGDAGKCKVDVQTRLHAAVSVMADPVQLQQLVFNLITNALEALAGYRSDGRLQISSEVLA 1612 D + + + + V P+ +Q LV N I + + L G++ + Sbjct: 237 -EDRLQFENQINPAIM---DVQVPPMLVQTLVENGIKHGIAQL---PQGGKILLKGTKDN 289 Query: 1613 DKVEICVDDNGPGIAPEERDQVFGAFYTTKSGGLGMGLAICNSVVQAHGGQLQAQV-SAL 1671 V + V++ G + +S G G+ + + +G + Q ++ Sbjct: 290 GTVTLEVENTGSLALKNTK----------ESTGTGLQN-VRERLQMLYGTEAQIKLSEKQ 338 Query: 1672 GGCRIRLTIP 1681 G + IP Sbjct: 339 GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-23 Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 4/130 (3%) Query: 127 VLVVDDDPSVRKALARLFRSQDIAHRLYASAEELFEGQVETPYACLLLDMNLPEASGLEV 186 +LV DDD ++R L + R+ ++A L+ ++ D+ +P+ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 187 QDVLRRLDLPWPIIFMTGYGTIPLTVQAMRAGAVEFLTKPFDEDQLLAVLDAARARALVQ 246 +++ P++ M+ T ++A GA ++L KPFD +L+ RAL + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI----GIIGRALAE 121 Query: 247 GRKWHQARQV 256 ++ + Sbjct: 122 PKRRPSKLED 131
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 2e-21 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 5 VCIVDDDASVRKSLANLLRSAGVATLLFASGEELLASDLAPMAGCVLLDLKMPVLSGLEV 64 + + DDDA++R L L AG + ++ L A V+ D+ MP + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 QREMARLGWRLPVICMSAHWD-DLAVEASMRNGALACLGKPFSEEVLLRVVEEALAALR 122 + + LPV+ MSA A++A GA L KPF L+ ++ ALA + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKA-SEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 46/233 (19%), Positives = 76/233 (32%), Gaps = 43/233 (18%) Query: 120 QGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHLLELVAHLNGQVPLPPFAAN 179 Q A+ A E G +P+ + +G L ++ Sbjct: 84 QNTFMTAIKASEKGAYDYLPKPFDLTELIG------IIGRALAEPKRRPSKLEDDSQDGM 137 Query: 180 GLLLHSRPYPDLSEVQGQVAAKRALLLAASGAHNLLFTGPPGTGKTLLASRLPGLLPPLD 239 L+ S ++ V ++ L+ TG GTGK L+A L Sbjct: 138 PLVGRSAAMQEIYRVLARLMQTDL---------TLMITGESGTGKELVARAL-------- 180 Query: 240 EHEALEVAAIQSVS---GHKPLDSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHG 296 H+ + V+ P D F H + +G + G A G Sbjct: 181 -HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTG------AQTRSTGRFEQAEGG 233 Query: 297 VLFLDEL----PEFERRVLEVLREPLESGEIVIARARDKVRFPARFQLVAAMN 345 LFLDE+ + + R+L VL++ GE + + ++VAA N Sbjct: 234 TLFLDEIGDMPMDAQTRLLRVLQQ----GE--YTTVGGRTPIRSDVRIVAATN 280
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 63.1 bits (153), Expect = 9e-14 Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 11/183 (6%) Query: 90 PTTTEIAPFQDSKINKVTPPPAAKPEVKPPPAPQKSAVATQAPKAQKVEPKPKESKPQPK 149 + T +AP V PPP E +P P P +K +PKPK K Sbjct: 50 ISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Query: 150 PAATPDFDSSQLSSQIASLEAELSNEQQMYAKRPRIHRLNAASTMRDKGAWYKEEWRKKV 209 P D E P + A+ K + + Sbjct: 110 KVEQPKRDVKP---------VESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRAL 160 Query: 210 ERVGNLNYPDEARRQQIYGNLRMMVSINRDGSLYEVLVLESSGQAVLDQAAQRIVRLAAP 269 R YP A+ +I G +++ + DG + V +L + + ++ + +R Sbjct: 161 SRN-QPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMR-RWR 218 Query: 270 FAP 272 + P Sbjct: 219 YEP 221
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.6 bits (173), Expect = 2e-17 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 4/114 (3%) Query: 6 KVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPQIIFVDVLMPRLDGYQ 65 ++V DD IR L AG +V S+ I ++ DV+MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 TCAVIKH-NSAFKDIPVILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAI 118 ++ A D+PV+++S+++ + G+ +L KPF EL+ I Sbjct: 65 ---LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.8 bits (176), Expect = 4e-18 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 2 ARVLIVDDSPTEMYRLTEWLEKHGHQVLKANNGADAVALARQEKPDAVLMDIVMPGMNGF 61 A +L+ DD L + L + G+ V +N A D V+ D+VMP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QATRQLSK-DPETSAIPVLIVTTKDQETDRIWAQRQGARGFVTKPVEEHALIAKLNEVLG 120 ++ K P+ +PVL+++ ++ I A +GA ++ KP + LI + L Sbjct: 64 DLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 121 A 121 Sbjct: 121 E 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-15 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 1507 ASLVMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDG 1566 + ++V DD +R V ++ L R G V + + D+++ D+ MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 1567 FEVATRIRRDERLKGLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQESVLLQSIAH 1623 F++ RI+ + LP+++++++ +A G DYL KP+ + L+ I Sbjct: 63 FDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 220 bits (562), Expect = 3e-72 Identities = 84/324 (25%), Positives = 143/324 (44%), Gaps = 29/324 (8%) Query: 6 ILITGGAGFIGSHLCDALLAKGYAVRVLDDLSTG-----KRDNL-QLGNPRLELVEGDVA 59 L+TG AGFIG H+ LL G+ V +D+L+ K+ L L P + + D+A Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 60 DAALVQR--AAAGCSAVVHLAAVASVQASVEDPVKTHQSNFIGTLNVCEAMRLQGVRRVV 117 D + A+ V +V+ S+E+P SN G LN+ E R ++ ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 118 FASSAAVYGNNGEGQSIAEDTPKAPLTPYAVDKLASEQYLDFYRRQHGLEPVVFRFFNIF 177 +ASS++VYG N + +D+ P++ YA K A+E Y +GL RFF ++ Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVY 182 Query: 178 GPRQDPSSPYSGVISIFSERATQGLPITVFGDGEQTRDFLYVGDLVQVMVQALEQPQVEE 237 GP P F++ +G I V+ G+ RDF Y+ D+ + +++ + + Sbjct: 183 GPWGRPDMAL----FKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHAD 238 Query: 238 GAV-----------------NIGLNQATSLNQLLKALETVVGSLPPVSYGEARSGDIRHS 280 NIG + L ++ALE +G + + GD+ + Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLET 298 Query: 281 RADNQRLLARFDFPQPTSMVEGLA 304 AD + L F T++ +G+ Sbjct: 299 SADTKALYEVIGFTPETTVKDGVK 322
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.3 bits (120), Expect = 8e-09 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 4/163 (2%) Query: 31 LESIAADLGVPQARIGWVVGATQAGYALGLILIVPLGDLFDRKRLVL--GQLLVAALALA 88 L IA D P A WV A +++G + L D KRL+L + + Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 89 AVGLAH-SWAVMLAALALVGLMAVMVQVMVAHAAILASPARQGQAVGTVTSGVVLGILLA 147 VG + S +M + G A VMV A + +G+A G + S V +G + Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIP-KENRGKAFGLIGSIVAMGEGVG 155 Query: 148 RLVSGALADVAGWRSVYFVAAGLLLLMTLVLCHCLPAGRRPQH 190 + G +A W + + ++ + ++ R H Sbjct: 156 PAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGH 198
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 28.0 bits (62), Expect = 0.016 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Query: 3 RALFLSLMMLAAPTWAAEPRELDWPALIPEGAPIIPPQLAPLHDMSQLSS----ALSAES 58 R LF LM+L A + W +P+ AP+ Q+ P Q + L S Sbjct: 16 RILFYLLMLLFCQQLAM----IFWRIGLPDNAPVSSVQITPAQARQQPVTLNDFTLFGVS 71 Query: 59 APAARQQAPDAPVVKGLDGQQIKL 82 + A DA + L + L Sbjct: 72 PEKNKAGALDASQMSNLPPSTLNL 95
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.7 bits (116), Expect = 1e-08 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 10/117 (8%) Query: 46 VAADVPGYVVDVPVKDNQRVKKGDLLIRVDPEHYQLAVDQAKALVASRKATWEMRKVNAR 105 + V ++ VK+ + V+KGD+L+++ + + ++ + + + R Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE-QTRYQILS 157 Query: 106 RRADMDNLVISKENRD---------DASNIANAALADYQQAQAALAAAELNLKRTRI 153 R +++ L K + + + + + Q ELNL + R Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214 Score = 48.7 bits (116), Expect = 1e-08 Identities = 25/161 (15%), Positives = 60/161 (37%), Gaps = 10/161 (6%) Query: 76 PEHYQLAVDQAKALVASRKATWEMRKVNARR---RADMDNLVISKENRDDASNIANAALA 132 +H L + + ++ + A + ++++ +++ + Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 133 DYQQAQAALAAAELNLKRTRIVATVDGYVTNLNIH-KGDYARTGEAVMAVV-DENSFWVY 190 + LA E + + I A V V L +H +G T E +M +V ++++ V Sbjct: 310 NIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVT 369 Query: 191 GFFEETKLPHVKVGDQAELQMMS-----GERLKGHVQSIAR 226 + + + VG A +++ + L G V++I Sbjct: 370 ALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINL 410
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 61.4 bits (149), Expect = 3e-12 Identities = 76/414 (18%), Positives = 152/414 (36%), Gaps = 31/414 (7%) Query: 33 LFGVLLAVLCAGLNESVTKISLADIRGAMGIGADEGAWLLAVYSAASVSAMAFAPWLATT 92 L + + + LNE V +SL DI W+ + A L+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 93 FSLRRFTMSAVGLFALLGLLQPLAPNLHSLMLL-RILQGFAAGALPPMLMSVALRFLPPG 151 ++R + + + ++ + + SL+++ R +QG A A P ++M V R++P Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 152 IKVYGLACYALTATFGPNLGTPLAGLWTEYVGWQWAFWQIILPSALAMFCVGWGLPQDPL 211 + G +G + G+ Y+ W + ++P + L + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL---LIPMITII--TVPFLMKLLK 190 Query: 212 RLERFKQ-FDWRGVLLGLPAISCIVLGLSLGDRWGWLDSPLICWLLGGGVLLLVLFLYNE 270 + R K FD +G++L I +L + + LI VL ++F+ + Sbjct: 191 KEVRIKGHFDIKGIILMSVGIVFFMLFTTS-YSISF----LIVS-----VLSFLIFVKHI 240 Query: 271 WSEPLPFFQLRMLSRRNLSFALVTLAGVLVVLSGVGSIPSAYLAQIQGYRPAQTSPLMML 330 PF + ++ + ++G S+ + + A+ +++ Sbjct: 241 RKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIF 300 Query: 331 VA-MPQLIALPLTAALCNLRAVDCRWVLATGLAMLALSCIGSSLL--TSEWIRGDFYPFY 387 M +I + L + R +VL G+ L++S + +S L T+ W F Sbjct: 301 PGTMSVIIFGYIGGILVDRRGP--LYVLNIGVTFLSVSFLTASFLLETTSW----FMTII 354 Query: 388 LLQVFGQPMAVLPLLMLS-TNGMSPQEGPFASSWFNTV----KGLAAVIAGGLL 436 ++ V G ++ ++ + QE S N +G I GGLL Sbjct: 355 IVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 139 bits (352), Expect = 2e-39 Identities = 57/367 (15%), Positives = 105/367 (28%), Gaps = 81/367 (22%) Query: 47 VVAPKVAGFVKQVLVEDNQQVQAGQLL---------------------ATIDARDYQAAL 85 + P VK+++V++ + V+ G +L A ++ YQ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 86 DAA-------------------------------QAQLLVAQAQSADARATLERQAALIA 114 + + Q Q Q L+++ A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 115 QAEAAVKAAQAEASFADHEVNRYSRLAQQGAGTVQNAQQARSRVDQARARLANTQAALVA 174 A + + + ++ +S L + A + ++ +A L ++ L Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQ 277 Query: 175 ARKQVDILSAQVASADGQLKR---------------AEAGLEKAQLDLSYTRITAPVDGM 219 ++ + K L K + + I APV Sbjct: 278 IESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVK 337 Query: 220 VGE-RALRVGAFVNPGARLLSVVPLQHAYVV-GNFQETQLTHVQPGQPVSISVDTFSGET 277 V + + G V L+ +VP V Q + + GQ I V+ F Sbjct: 338 VQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTR 397 Query: 278 ---LKGHVQSIAPATGVTFAAVKPDNATGNFTKVVQRIPVKIVFDDGQPLLARLRVGMSV 334 L G V++I D G V+ I + + + L GM+V Sbjct: 398 YGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNI--PLSSGMAV 448 Query: 335 EATIDTR 341 A I T Sbjct: 449 TAEIKTG 455
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 35.8 bits (82), Expect = 2e-05 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 5 LNGKRALISGSMAGQGLSTAIDLAAAGAEVV---LNDRTQALVDAALKAIRERLPKARII 61 + GK A I+G+ G G + A LA+ GA + N V ++LKA R +A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKA-EARHAEAFPA 64 Query: 62 GVAADLGTEQGVQALLQQVPHTDILVN 88 V ++ + +++ DILVN Sbjct: 65 DVRDSAAIDEITARIEREMGPIDILVN 91
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.6 bits (219), Expect = 6e-23 Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 4 VLITGCSSGIGRALAEAFRDAGHDVWATARKAEDVEHLAGA----GFTARQ--LDVNDPE 57 ITG + GIG A+A G + A E +E + + A DV D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 58 GLKHLAEELEARHGRLDILVNNAGYGAMGPLLDGGVDAMRQQFETNVFAVIGVTGAVFPL 117 + + +E G +DILVN AG G + + F N V + +V Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 118 LRRAR-GLVVNIGSVSGVMVTPFAGAYCASKAAVHALSDALRLELAPFGIQVMEVQPGA 175 + R G +V +GS + AY +SKAA + L LELA + I+ V PG+ Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 29.2 bits (65), Expect = 0.020 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 18/62 (29%) Query: 9 DMPPPVKTVGVLAWMRVNLFSSWL------------------NTLLTLFAVYLVWLIVPP 50 D P P+ + + W N+ SS L L++L+A + + L+VPP Sbjct: 47 DEPAPLNAMTLAQWSSPNVLSSLLAVYSDHIYRNQPMMIRENKPLISLWAQWYIGLMVPP 106 Query: 51 LL 52 L+ Sbjct: 107 LM 108
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 63.9 bits (155), Expect = 2e-13 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 38/194 (19%) Query: 103 ESSLGSAVIMSPEGYLLTNNHVTSGADQIVVALK------------DGRETLARVIGSDP 150 + + S V++ LLTN HV ALK +G T ++ Sbjct: 100 GTFIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSG 158 Query: 151 ETDLAVLKIDL--------KNLPAITIGRSDTIHIGDVTLAIGNPFGVGQTVTMGIISAT 202 E DLA++K + + T+ + + G P TM + Sbjct: 159 EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMW--ESK 215 Query: 203 GRNQLGLNNYEDFIQTDAAINPGNSGGALVDASGNLVGINTAIFSKSGGSQGIGFAIP-- 260 G+ L +Q D + GNSG + + ++GI+ G+ Sbjct: 216 GK-ITYLKGE--AMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGA 263 Query: 261 VKLALEVMKSIVEH 274 V + V + ++ Sbjct: 264 VFINENVRNFLKQN 277
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 73.7 bits (181), Expect = 1e-15 Identities = 53/150 (35%), Positives = 70/150 (46%), Gaps = 17/150 (11%) Query: 33 VDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGEEVDLALLVDGLQAEREQGITI 92 VD GK+TL LL++S I E S GTT D ER++GITI Sbjct: 12 VDAGKTTLTESLLYNSGAITE-------LGSVDKGTT--------RTDNTLLERQRGITI 56 Query: 93 DVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIA 152 F K I DTPGH + + S D AI+L+ A+ GVQ QTR + Sbjct: 57 QTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 153 SLLGIKHIVVAVNKMDLKGFD-EGVFEEIK 181 +GI I +NK+D G D V+++IK Sbjct: 117 RKMGIPTIFF-INKIDQNGIDLSTVYQDIK 145
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.8 bits (74), Expect = 0.001 Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 15/169 (8%) Query: 67 RYLQGFSAAMGNLAQRAIEAEQLQAR----HAAEQAAAQEAARLKAETQRLAAEEAARKQ 122 R ++G +AA N+ LQ R AA+ + AA E AA EA R + Sbjct: 179 REMEGLTAAY-NVKLFTEAISSLQIRMNTLTAAKASIEAAAANKAREQ---AAAEAKR-K 233 Query: 123 AEAERLAAHAERQRQEAARQRISYISDARTASSVPTI-TPIGAATFALAESASTVMLEAI 181 AE + R + S TA+ I GAA+ A A S + +L + Sbjct: 234 AEEQARQ--QAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRV 291 Query: 182 KAAVAGMGTVAVAAGLQFIVTALAAAWPSTLGSADRRYLVSTPLSRPKP 230 A+ + V A+ + A W RY + ++ Sbjct: 292 LASAPSVMAVGFASLTY--SSRTAEQWQD-QTPDSVRYALGMDAAKLGL 337
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1315 bits (3404), Expect = 0.0 Identities = 670/1033 (64%), Positives = 828/1033 (80%), Gaps = 4/1033 (0%) Query: 1 MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60 M+ FFI RPIFAWV+A+++M+ GAL+IL+LP+ QYP+IAPPA+++S YPGA AQTVQDT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120 V QVIEQ +NGIDNL Y+SS S+S GS+TIT TF+ GT+PD AQVQVQNKL LATPLLPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 EVQQQGIRVTKAVKNFLMVIGLVSEDGSMTKDDLANYIVSNMQDSISRTAGVGDFQVFGA 180 EVQQQGI V K+ ++LMV G VS++ T+DD+++Y+ SN++D++SR GVGD Q+FGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPAKLNKFQLTPVDVRTAVAAQNVQVSSGQLGGLPAMPGTQLNATIIGKTRL 240 QYAMRIWLD LNK++LTPVDV + QN Q+++GQLGG PA+PG QLNA+II +TR Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTAEQFENILLKVNSDGSQVRLRDVAQVGLGGENYAISAQFNGKPASGLAVKLATGANAL 300 + E+F + L+VNSDGS VRL+DVA+V LGGENY + A+ NGKPA+GL +KLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DTATALRKTISDLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360 DTA A++ +++L+PFFP G+K ++PYDTTP V SI V+ TL EA++LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N RAT+I T+ VPVVLLGTF ILAA G+SINTLTMF MVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480 E+ LPPKEAT++SM QIQGALVGIA+VLSAV +PMAFFGGSTG IYRQFSITIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALIFTPALCATMLKPLKKGEHHVAKSGFFGWFNRNFDRSVNGYERSVGTILRNKVP 540 SVLVALI TPALCAT+LKP+ EHH K GFFGWFN FD SVN Y SVG IL + Sbjct: 481 SVLVALILTPALCATLLKPVSA-EHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 541 FLLGYALIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVIDQMREYLLE 600 +LL YALIV GM+ LF R+P++FLPEEDQGV +Q PAG++ ERTQ V+DQ+ +Y L+ Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 601 DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERS-KENSVFGLAERAQQHFFSFRD 659 +E V SVFTVNGF+F+G+ Q++GMAF+ LKPW+ER+ ENS + RA+ RD Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRD 659 Query: 660 AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHAKLMEARNQFLAKAAQSKV-LSAVRPNG 718 V F PA++ELG ATGFD L D+ G+GH L +ARNQ L AAQ L +VRPNG Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 719 LNDEPQYQLTIDDERASALGVTISDINNTLSIALGASYVNDFIDRGRVKKVYIQGEPNAR 778 L D Q++L +D E+A ALGV++SDIN T+S ALG +YVNDFIDRGRVKK+Y+Q + R Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 779 MSPEDLQKWYVRNGAGEMVPFSSFATGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEA 838 M PED+ K YVR+ GEMVPFS+F T W YGSP+L RYNG+ +MEI G APG S+G+A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 839 MAEVERIAGELPDGIGYSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIA 898 MA +E +A +LP GIGY WTGMSY+E+LSG+Q PAL A+S + VFLCLAALYESWSIP++ Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 899 VVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHE-QGKSL 957 V+LVVPLGI+G L+A +L NDVYF+VGLLTTIGL+AKNAILIVEFAK+L E +GK + Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 958 YDAAIEACRMRLRPIIMTSLAFILGVVPLTISSGAGAGSQHAIGTGVIGGMISATVLAIF 1017 +A + A RMRLRPI+MTSLAFILGV+PL IS+GAG+G+Q+A+G GV+GGM+SAT+LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1018 WVPLFFVAVSSLF 1030 +VP+FFV + F Sbjct: 1020 FVPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 45.2 bits (107), Expect = 2e-07 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 2/96 (2%) Query: 61 RVAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPAVYEATLANAQANLQATRSLAERYK 120 R E++P N I+ + + KEG V+ G L ++ EA Q++L R RY+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 QLIDEQAVSKQEYDDANAKR--LQAEAALKSAQIDL 154 L ++K + L Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Score = 41.7 bits (98), Expect = 3e-06 Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 23/229 (10%) Query: 73 ILKRLFKEGS----DVKAGQQLY---QIDPAVYEATLANAQANLQATRSLAERYKQLIDE 125 L + + V + Y + VY++ L ++ + + + + QL Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 126 QAVSKQEYDDANAKRLQAEAALKSAQIDLRYTKVLAPISGRI-GRSSFTEGALVSNGQTN 184 + + K L + + + + AP+S ++ TEG +V+ +T Sbjct: 299 EILDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET- 355 Query: 185 AMATIQQLDPIYVDVTQSTAELLKLRRDL------ESGQLQKSGDNAASVQLVLEDGSLF 238 M + + D + V ++ + E+ + G V+ + D Sbjct: 356 LMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIED 415 Query: 239 KQEGRLEFSEVAVDETTGSVTLRAIFPNPDHTLLPGMFVHARLKAGVNS 287 ++ G + ++++E S + I L GM V A +K G+ S Sbjct: 416 QRLGLVFNVIISIEENCLSTGNKNIP------LSSGMAVTAEIKTGMRS 458
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 142 bits (359), Expect = 9e-45 Identities = 80/209 (38%), Positives = 126/209 (60%) Query: 1 MVRRTKEEAQETRTQIIEAAEKAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQ 60 M R+TK+EAQETR I++ A + F ++GV+ T+L +IA+ AGVTRGAIYWHF +K++L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 ALLDSLHETHDHLARASESEDELDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFT 120 + + L +++ DPL +R++L+ V V + R R + EI+ HKCEF Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 121 DDMCEIRQQRQSAVLDCHEGITLALANAVRREQLPAGLDVERAAVALFAYVDGLIGRWLL 180 +M ++Q +++ L+ ++ I L + + + LPA L RAA+ + Y+ GL+ WL Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 181 LPDSFDLLRDAEKWVDTGLDMLRLSPALR 209 P SFDL ++A +V L+M L P LR Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 137 bits (347), Expect = 7e-38 Identities = 93/426 (21%), Positives = 179/426 (42%), Gaps = 27/426 (6%) Query: 1 MTAALPQTALRN--VLTALMLAIFLGALDQTIVAVSLPAISAQFNDVG-LLAWVISGYMV 57 M + Q+ LR+ +L L + F L++ ++ VSLP I+ FN WV + +M+ Sbjct: 1 MNTSYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFML 60 Query: 58 AMTVAVPIYGKLGDLYGRRRMILTGISLFTLASIACALAQDMQQ-LVLARVLQGIGAGGM 116 ++ +YGKL D G +R++L GI + S+ + L++AR +QG GA Sbjct: 61 TFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAF 120 Query: 117 VSVSQAIIGDFVPPRERGRYQGYFSSMYAAASVAGPVLGGWLTEYLSWRWVFWINLPLGL 176 ++ ++ ++P RG+ G S+ A GP +GG + Y+ W ++ I + + Sbjct: 121 PALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITII 180 Query: 177 VALWAIHRALEGMPVQRRQAQVDYLGAVLLILGLGSLLLGITLVGQGHAWTAPAVVALFA 236 + + + R + D G +L+ +G+ +L T +V++ Sbjct: 181 TVPFLMKLLKKE---VRIKGHFDIKGIILMSVGIVFFMLFTTSYSISF--LIVSVLSFL- 234 Query: 237 CAGLGTALFIGHERRCQEPLLPLGLFGNR---VAVLCWAVIFFASFQSISLTMLMPLRYQ 293 +F+ H R+ +P + GL N + VLC +IF +S+ M Sbjct: 235 -------IFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVH 287 Query: 294 GITGAGADSAALHLLPLAIGLPIGAFTGGRMTSFTGRYKPQILAGALLMPVAIFAMAITP 353 ++ A S + P + + I + GG + G + G + V+ + Sbjct: 288 QLSTAEIGSVI--IFPGTMSVIIFGYIGGILVDRRGPLY-VLNIGVTFLSVSFLTASFLL 344 Query: 354 PQSGVLSALFMLFTGIACGLQFPTSLVGT--QSAVDSKDIGVATSTTNLFRSLGGAMGVA 411 + + ++F GL F +++ T S++ ++ G S N L G+A Sbjct: 345 ETTSWFMTIIIVFV--LGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIA 402 Query: 412 CMSSVL 417 + +L Sbjct: 403 IVGGLL 408
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 23.9 bits (51), Expect = 0.040 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 6 RRVALVMALTAVAGLYGSACWR---AELLRNQPSSAASCEQAHCVPHTA 51 RR + A+T+VA L+ S AE L S A + H + Sbjct: 6 RRAVTIFAVTSVASLFASGVLETSMAESLSTNVISLADTKAKDNTSHKS 54
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 38.2 bits (89), Expect = 1e-05 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 29/122 (23%) Query: 3 KIAIIGATGRAGSQLLEEALRRGHSVLAI-----ARDPS------TLQGRAGVTVQALDV 51 K + GA G G + + L GH V+ I D S L + G +D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 52 KDSAALQKALA--GVDAVLSAAH-----FSTIEPHA-----------IIEPVKRAGVKRL 93 D + A + V + H +S PHA I+E + ++ L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 94 LV 95 L Sbjct: 122 LY 123
>SECA#SecA protein signature. Length = 901 Score = 57.2 bits (138), Expect = 9e-14 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 19 HHDHDHGHVHGPHCNHGHQEPVRNALKDVGRNDPCPCGSEKKFKKCHG 66 H + + VGRNDPCPCGS KK+K+CHG Sbjct: 852 AQMQQLSHQDDDS-AAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHG 898
>SECA#SecA protein signature. Length = 901 Score = 49.9 bits (119), Expect = 8e-10 Identities = 16/26 (61%), Positives = 19/26 (73%) Query: 129 TVELKAGRNDPCPCNSGQKFKKCCAS 154 T E K GRNDPCPC SG+K+K+C Sbjct: 874 TGERKVGRNDPCPCGSGKKYKQCHGR 899 Score = 28.7 bits (64), Expect = 0.013 Identities = 8/14 (57%), Positives = 8/14 (57%) Query: 6 CPCGSGNLLDACCG 19 CPCGSG C G Sbjct: 885 CPCGSGKKYKQCHG 898
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 118 bits (297), Expect = 5e-34 Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 60 GLAAGYCWANGDGDEDGDGV-PDSRDKCPGTPRGVQVDANGCPPEPAPVVEEVVVQKEEV 118 Y W N GD G PD+ G PAP V K Sbjct: 157 ATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKH-F 215 Query: 119 IVIRDVHFEFDSARLTPADKERLNTISTRLKQ-EAPSARLSVTGHTDSVGSDSYNQNLSE 177 + DV F F+ A L P + L+ + ++L + + V G+TD +GSD+YNQ LSE Sbjct: 216 TLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSE 275 Query: 178 RRAHSVTDYLVESGVPRASFVSVVGAGETQPVADNATADGRSM---------NRRTEIKI 228 RRA SV DYL+ G+P A +S G GE+ PV N + + +RR EI++ Sbjct: 276 RRAQSVVDYLISKGIP-ADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334 Query: 229 E 229 + Sbjct: 335 K 335
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 116 bits (291), Expect = 6e-33 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 13/138 (9%) Query: 113 PPSQPAPDPQPQVIS--LDDQGQVMFAFDSADLTAGSQQRLQSLLPRLNELGVS--RIKV 168 P PAP P P+V + + V+F F+ A L Q L L +L+ L + V Sbjct: 198 PVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVV 257 Query: 169 VGHTDNVGSDSYNQALSERRAASVAQYLISQGLAPQKVTSEGRGASEPVAENDTEQGR-- 226 +G+TD +GSD+YNQ LSERRA SV YLIS+G+ K+++ G G S PV N + + Sbjct: 258 LGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQR 317 Query: 227 -------AQNRRVDLHLN 237 A +RRV++ + Sbjct: 318 AALIDCLAPDRRVEIEVK 335
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 70.6 bits (173), Expect = 3e-16 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 23/179 (12%) Query: 8 RLLLTGAAGGLGKVLRERL-QGYAEVLRLSDISP----------MAPAAGPHEEVVTCDL 56 + L+TGAAG +G + +RL + +V+ + +++ + A P + DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 57 ADKAAVHALVE--GVDAILHFG---GV--STE--HSFEDILGPNICGVFHVYEAARKHGV 107 AD+ + L + + V S E H++ D N+ G ++ E R + + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADS---NLTGFLNILEGCRHNKI 118 Query: 108 KRIIFASSNHTIGFYRQDERIDAHAPRRPDSYYGLSKCYGEDMASFYFDRYGIETVSIR 166 + +++ASS+ G R+ + P S Y +K E MA Y YG+ +R Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 1e-18 Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 1/136 (0%) Query: 6 PRILIVEDDQRLAELTAEYLQANGFDVAVEGDGARAARRIVDSQPDMVILDLMLPGEDGL 65 IL+ +DD + + + L G+DV + + A R I D+V+ D+++P E+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 SICRRVRGQYAG-PILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSE 124 + R++ P+L+++A++ + ++ + GA DY+ KP L+ I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 125 PAQGKTQELAFGALSI 140 K ++ + + + Sbjct: 124 RRPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 7e-04 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 23/106 (21%) Query: 430 LQNLVSNALRHART------EVRLSYQLGQQRCRIEVEDDGPGIPEGYWDRIFTPFTRLD 483 +Q LV N ++H ++ L +EVE+ G + Sbjct: 260 VQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN------------- 306 Query: 484 DSRTRASGGHGLGLSIVRRIIYWHAGRATVGRSEALGGACFSLNWP 529 T+ S G GL ++ R+ + A + SE G + P Sbjct: 307 ---TKESTGTGL-QNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 101 bits (252), Expect = 2e-28 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 20/227 (8%) Query: 11 LQHHWPLPRPLPGAVLVSCAFDPSRLAADDFQRAGIEPSPSLQRSVAKRQAEYLAGRVCA 70 L H+PLP G L FD S D + L+ + KR+AE+LAGR+ A Sbjct: 2 LTSHFPLP--FAGHRLHIVDFDASSFREHDLLW--LPHHDRLRSAGRKRKAEHLAGRIAA 57 Query: 71 RAALQRLNGSDHVPGTHEDRSPIWPPGIHGSITHGKGWAAAVVAAQGSCRGLGLDQEALL 130 AL+ + G VPG + R P+WP G+ GSI+H A AV++ Q +G+D E ++ Sbjct: 58 VHALREV-GVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISRQ----RIGIDIEKIM 112 Query: 131 DDERAERLMGEILTQAELERLDRSQLG--LAVTLTFSLKESLFKTLYPLTRQRFYFEHAE 188 A L I+ E + L S L LA+TL FS KES++K + F A+ Sbjct: 113 SQHTATELAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKA-FSDRVTLPGFNSAK 171 Query: 189 ILQWSPEGLARLRLLIDLS---PEWRHGAELEGQFCMQDGHLLSLVS 232 + + L LL + E + ++ +D +++LVS Sbjct: 172 VTSLT-ATHISLHLLPAFAATMAERT----VRTEWFQRDNSVITLVS 213
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 5e-21 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 2 KLLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGLPGMSGLE 61 +LV +D+A +R L L +G+ V+ ++A DL V D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEE-LEARLNALLRRSS 120 L+ R++ P+L+++A+ + ++ GA DYL KPF E + AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.007 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 20/72 (27%) Query: 355 LLENAFR------LSLGQVRVSLQEAPGRLTLCIEDDGPGVPADQRERILERGERLDRQH 408 L+EN + G++ + + G +TL +E+ G L Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--------------LKNTK 308 Query: 409 PGQGIGLAVVKD 420 G GL V++ Sbjct: 309 ESTGTGLQNVRE 320
>PF05043#Transcriptional activator Length = 493 Score = 29.5 bits (66), Expect = 0.033 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 129 QTTVGFLLNIIPNTVVGAFANGDILQVLMFSVIFGFALHRLGSYGKPLLDLIDRFAHVMF 188 + F +++ P ++G + FS + F ++ + + + +++ Sbjct: 129 KRQFQFEVSLTPVQIIGNERDIRYFFAQYFSEKYYFLEWPFENFSS---EPLSQLLELVY 185 Query: 189 NIINMIMKL 197 + M L Sbjct: 186 KETSFPMNL 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 1e-15 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 7/143 (4%) Query: 669 PKILCVDDNAANLLLVQTLLEDLGADVLALDNGHAAVRAVQSEHFDLVLMDVQMPGMDGR 728 IL DD+AA ++ L G DV N R + + DLV+ DV MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 729 ACTEQIRLWENTQSGSPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKW 788 +I+ LP++ ++A G DYL KP +L ++ + Sbjct: 64 DLLPRIKKA-----RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR- 117 Query: 789 TGLSLGVGPLERLEEQQAEGQDL 811 L+ +LE+ +G L Sbjct: 118 -ALAEPKRRPSKLEDDSQDGMPL 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 2e-23 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 3/133 (2%) Query: 22 ASSILAIEDDPVLGAYLHEELQRGGFQVTWCRNGAEGLETAGRQAFDVVLMDILLPGLNG 81 ++IL +DD + L++ L R G+ V N A D+V+ D+++P N Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 82 LDALAQLR-RRSATPVILMSALGAEADRINGFQLGADDYLPKPFSIVELQVRIEAILRRV 140 D L +++ R PV++MSA I + GA DYLPKPF + EL I L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE- 121 Query: 141 ALERRHQPPLGVA 153 +RR + Sbjct: 122 -PKRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.009 Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 347 ENMLRNAIRHSPENGLVHLAGQREGGYWRLWLEDQGGGVANDDLE 391 EN +++ I P+ G + L G ++ G L +E+ G + E Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309
>PF06580#Sensor histidine kinase Length = 349 Score = 27.5 bits (61), Expect = 0.028 Identities = 8/30 (26%), Positives = 14/30 (46%) Query: 51 EAMAEKAKRDQELNRQQQEKAEQKARAAQI 80 ++A+ DQ ++A+ A AQI Sbjct: 141 FKNYKQAEIDQWKMASMAQEAQLMALKAQI 170
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 51.7 bits (124), Expect = 4e-09 Identities = 43/252 (17%), Positives = 92/252 (36%), Gaps = 46/252 (18%) Query: 304 TVLVTGAGGSIGSELCRQIIGLEPKTLLLFDHSEFNLYSILTELEQRITRESLAVQLLP- 362 LVTGA G IG + ++++ ++ D N Y + + + L + P Sbjct: 2 KYLVTGAAGFIGFHVSKRLLE-AGHQVVGID--NLNDY-----YDVSLKQARLELLAQPG 53 Query: 363 ---ILGSVRNQQHLADVMSTWRVDTVYHAAAYKHVPMVEHNVAEGILNNVFGTLCTAQAA 419 + +++ + D+ ++ + V+ + V N +N+ G L + Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 420 LQTGVANFVLIST---------------DKAVRPTNVMGSSKRLSELILQALSREAAPVM 464 + + + S+ D P ++ ++K+ +EL+ S + Sbjct: 114 RHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSH-----L 168 Query: 465 YGDSSKISRVNKTRFTMVRFGNVLGSSGS---VIPLFHQQIKAGGPLTV-THPKITRYFM 520 YG T +RF V G G + F + + G + V + K+ R F Sbjct: 169 YG----------LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFT 218 Query: 521 TIPEAAQLVVQA 532 I + A+ +++ Sbjct: 219 YIDDIAEAIIRL 230
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 140 bits (355), Expect = 5e-41 Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 58/328 (17%) Query: 39 QYYDSERNFKNDGTNPGVRLGYFLTDDVSLDLGYNET--HNARGEVFNKDIKGSKAKLDA 96 + ++ + G GY + V ++GY+ +G V N K +L A Sbjct: 43 GFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA 102 Query: 97 TYHFGTVGDALRPYVSAGFAH-ESLGQATRSGRDHSTFAN--VGAGAKWYITDMFFARAG 153 + + D L Y G + ++ G++H T + G ++ IT R Sbjct: 103 KLGY-PITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLE 161 Query: 154 VEAMYNIDNGNT----EWGPTVGVGLNFGGSGGK----VAPAPAPVAEVCSDSDNDGVCD 205 + NI + +T + +G+++ G+ VAPAPAP EV + Sbjct: 162 YQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKH------- 214 Query: 206 NVDKCPDTPANVTVDADGCPAVAEVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMKQY- 264 ++ DV F+F+K+ +KP + L + Sbjct: 215 -------------------------FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLD 249 Query: 265 -PQTTTVVEGHTDSVGPDAYNQKLSERRANAVKEVLTQQYGVESTRVDSVGYGETRPVAD 323 + VV G+TD +G DAYNQ LSERRA +V + L + G+ + ++ + G GE+ PV Sbjct: 250 PKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISK-GIPADKISARGMGESNPVTG 308 Query: 324 NATEDGR---------AVNRRVEAQVEA 342 N ++ + A +RRVE +V+ Sbjct: 309 NTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 37.0 bits (85), Expect = 2e-04 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 361 VARQLLQAVGVLHRRNLLHRDIKPDNLHLGE-DGQLRLLDFGLAYCPGLSEDPRHELPGT 419 +A +LL L + ++H DIKP N+ G+ ++D GL G E P+ T Sbjct: 250 IAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSG--EQPKG---FT 304 Query: 420 PSYIAPEAFEGQ-PPSPRQDLYAVGVTLYHLLTGHYPYGEVEAFQRPRF 467 S+ APE G S + D++ V TL H + G E++ Q RF Sbjct: 305 ESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRF 353
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.9 bits (101), Expect = 1e-06 Identities = 74/419 (17%), Positives = 140/419 (33%), Gaps = 73/419 (17%) Query: 38 IAADLQLSAQQRGLMVATPILAGAVLRFAMGLLVDRLSPKTAGLIGQVIVIVALACAWYL 97 IA D + +L ++ G L D+L K L G +I+ + ++ Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFG-IIINCFGSVIGFV 98 Query: 98 GVHTYEQALLLGVFLGVAGASF-AVSLPLASQWYPPQHQGKAMG-IAGAGNSGTVFAALL 155 G + ++ G A+F A+ + + +++ P +++GKA G I G + Sbjct: 99 GHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158 Query: 156 APLLAAGFGWNNVFGFAVIPLLVTVVVFALLARNAPQRPKPKAMADYLKAL--------- 206 ++A W+ + +I T++ L + + + K D + Sbjct: 159 GGMIAHYIHWSYLLLIPMI----TIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFF 214 Query: 207 ---GDRDSWWFMFFYSVTFGGFI------------------------------------G 227 S F+ ++F F+ G Sbjct: 215 MLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAG 274 Query: 228 LASALPGYFSDQYGLSPITAGY-YTAACVFAGSLMRPLGGALADRFGGIRTLLGMYSVAA 286 S +P D + LS G + + +GG L DR G + L + + Sbjct: 275 FVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS 334 Query: 287 ICIAAVGFNLPSATAALALFVSAMLG-LGAGNGAVFQLVPQRFR-QEIGVMTGLI----- 339 + F L + + + + + +LG L + +V + QE G L+ Sbjct: 335 VSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394 Query: 340 -GMAGGIG--GFLLAAGL-------GTIKQHTGDYQMGLWLFASLGLLAWFGLLGVKQR 388 GI G LL+ L + Q T Y L LF+ + +++W L V + Sbjct: 395 LSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSNLLLLFSGIIVISWLVTLNVYKH 453
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.5 bits (113), Expect = 8e-09 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 3 RILLIDDTQNKLGRLKAALREAGFEVIEAPDLTIDLPACVEMVRPDVVLIDTDSPDRDVM 62 IL+ DD L AL AG++V + L + D+V+ D PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAA-TLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EQVVMVSRDQPR-PIVLFTDEHDPGVMRQAIQAGVSAYIVEGIHAARLQPILDVAMARFE 121 + + + + +P P+++ + ++ +A + G Y+ + L I+ A+A + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 SDQA 125 + Sbjct: 124 RRPS 127
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.1 bits (62), Expect = 0.006 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 22 AKDVQPDEVVKLVNAKTIKSLDE----LKATAVAKHPGATVTDSELENEYGRYIYKVEMR 77 + ++ + + + A+ I D K A+ T + E R Y+V +R Sbjct: 129 KRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNVR 188 Query: 78 DTQNVE--WDVDLDAKTGEVLK 97 V W +DA G+VL Sbjct: 189 FLTPVPGNWIYMIDAADGKVLN 210
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.4 bits (63), Expect = 0.004 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 11/89 (12%) Query: 22 AVARDLDQDEAL---QLRQKGVI-LPLEQLLETALGRHPGAR-----LLEAELEEDDDRY 72 + +LD+ + + + + + + P A L +E+ R Sbjct: 122 TLIPNLDKRTLKTEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRL 181 Query: 73 EYEVELLTTEGVVR--EIKLDASTGALLK 99 YEV + V +DA+ G +L Sbjct: 182 AYEVNVRFLTPVPGNWIYMIDAADGKVLN 210
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.4 bits (201), Expect = 5e-20 Identities = 32/133 (24%), Positives = 60/133 (45%) Query: 2 RLLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGLE 61 +L+ +D+ + L L R GY V ++ + DL++ D+ +P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAKG 121 +L + + A PVL+++A+ ++ I+ + GA DYL KPF EL I L K Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 LANQPRLEAAGLH 134 ++ ++ Sbjct: 125 RPSKLEDDSQDGM 137
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 3e-04 Identities = 39/305 (12%), Positives = 96/305 (31%), Gaps = 81/305 (26%) Query: 148 EGFRRLQQIGLGMGLVALILVLVLQRITVTRSLRPLERARQQIAQLQQGQRSQLDAQVPS 207 + + L + +++ + + + A++ Q + + + + + Sbjct: 108 KPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFF----KNYKQAEIDQWKMASMAQE--A 161 Query: 208 ELAPLVGQIN-HLLSHTEDSLR--------RSRNALGNLGHALKTPLAVLLSLASSERLN 258 +L L QIN H + + +++R ++R L +L ++ L Sbjct: 162 QLMALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLSELMRY------------SLR 209 Query: 259 DLPDVRAQLREQLEQIQQRLARELNRARLAGDALPGAQFDCDTELPGLLATLGMIHGEGL 318 + L ++L + L +L + D L + + Sbjct: 210 YSNARQVSLADELTVVDSYL--QLASIQF-EDRL-QFENQINPA---------------- 249 Query: 319 LLERDVPPGLLLPWDREDFLELLGNLLDNACKWA------DSEVRLGIAPTTEGYQVWVD 372 +++ VPP L+ L++N K ++ L + V+ Sbjct: 250 IMDVQVPPMLVQT------------LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVE 297 Query: 373 DDGPGIPESQRLQVLERGSRLDEQVDGHGLGLGIVRD-IVDAWGGSLAL-LESPLGGLRV 430 + G ++ + + G GL VR+ + +G + L G + Sbjct: 298 NTGSLALKNTK--------------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA 343 Query: 431 SIELP 435 + +P Sbjct: 344 MVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 2e-16 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 2 HLLVVEDDDIVRMLMVDVLDELGYETLEADCASAALKILQDPGKALALLMTDVGLPDMRG 61 +LV +DD +R ++ L GY+ A+ + + L++TDV +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA--GDGDLVVTDVVMPDENA 62 Query: 62 EELAKQARAIRPALPVLFASGYAESLDVPEGMHM-----IGKPFSIEQLRDKVVGILGTP 116 +L + + RP LPVL S + + + KPF + +L + L P Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 8e-18 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1032 KVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGF 1091 +L+ DDD L AL G V I N + D DLV+ DV+MP+ + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDENAF 63 Query: 1092 EATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLPQ 1151 + I++ LP++ ++A+ + + GA DYL KP DL L +I L + Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 1152 LER 1154 +R Sbjct: 122 PKR 124 Score = 71.4 bits (175), Expect = 9e-15 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 765 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFALAAQYIPDAILLDMRLPDHSGLTV 824 ILV +D+ +L GY + A + A D ++ D+ +PD + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 825 LQRLKELAATRHIPVHIISVEDRVE---AAMHMGAVGYAVKPTSREELKEVFARLEAKLT 881 L R+K+ +PV ++S ++ A GA Y KP EL + R A+ Sbjct: 66 LPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 882 QKLKHIL 888 ++ + Sbjct: 124 RRPSKLE 130 Score = 63.3 bits (154), Expect = 3e-12 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 886 HILLVEDDDLQRESIARLIGDDDVEITAVALAQDALALLRENIYDCMIIDLKLPDMLGNE 945 IL+ +DD R + + + ++ + A + D ++ D+ +PD + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 946 LLKRMTAEDIRSFPPVIVYTG 966 LL R+ PV+V + Sbjct: 65 LLPRIKKARPD--LPVLVMSA 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.6 bits (173), Expect = 2e-15 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 25/197 (12%) Query: 7 AKLLIVDDLPENLLALDALIQGQDREVHQAQSAEAALSLLLEHEFALAILDVQMPGMNGF 66 A +L+ DD L+ + +V +A + + L + DV MP N F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 ELAELMRGTEKTRNIPIVFVTAAGREMNYAFKGYESGAVDFLYKPLDTLAVKNKVTVFVD 126 +L ++ + ++P++ ++A M A K E GA D+L KP D Sbjct: 64 DLLPRIK--KARPDLPVLVMSAQNTFMT-AIKASEKGAYDYLPKPFD------------- 107 Query: 127 LYRQRKVLDRQLQALERSRQEQELLLTQLQVARSELEHAVRMRDDFMSI--VAHEVRTPL 184 +++ +AL ++ L Q + + M++ + + + +T L Sbjct: 108 ---LTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLM---QTDL 161 Query: 185 NGLIL-ETQLRKMHLAR 200 +I E+ K +AR Sbjct: 162 TLMITGESGTGKELVAR 178
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.5 bits (170), Expect = 4e-17 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 9 VLVVEDEPAIRMILRDYLAGEGYHVLVAEDGEQAFAILASKPHLDLMVTDFRLPGGISGV 68 +LV +D+ AIR +L L+ GY V + + + +A+ DL+VTD +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-DGDLVVTDVVMPDE-NAF 63 Query: 69 EIAEPAVKLRPDLKVIFISGYPAEILESGSPIARKAPILAKPFDLDTLHKQIQ 121 ++ K RPDL V+ +S + + L KPFDL L I Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.3 bits (97), Expect = 6e-06 Identities = 52/271 (19%), Positives = 95/271 (35%), Gaps = 53/271 (19%) Query: 86 FFGALGDKFGRQKILAATIVIMSLSTFAIGLIPSYDSIGIWAPILLLLAKMAQGFSVGGE 145 GAL D+FGR+ +L ++ ++ + P +W +L + ++ G + G Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-----LW---VLYIGRIVAGIT-GAT 112 Query: 146 YTGASIFVAEYAPDRKR----GFLGSWLDFGSIAGFVLGAGVVVLISTFLGEEKFLEWGW 201 A ++A+ +R GF+ + FG +AG VLG +G + Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG--------LMG-----GFSP 159 Query: 202 RLPFFLALPLGIIGLYLRHALEETPAFQQHVEKLEQGDREGLASGPKVSFKEVATKHWRS 261 PFF A L + L K E+ A P SF+ Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPES------HKGERRPLRREALNPLASFR--------- 204 Query: 262 LVTCIGVVIATNVTYYML-------LTYMPSYLSHNLHYS-EDHGVLIIIAIMVGMLFVQ 313 + VV A ++++ + H+ G+ + ++ L Sbjct: 205 WARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 314 PIIGLLSDKWGRRPFIIVG----SVGLFALA 340 I G ++ + G R +++G G LA Sbjct: 265 MITGPVAARLGERRALMLGMIADGTGYILLA 295 Score = 37.9 bits (88), Expect = 8e-05 Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 16/163 (9%) Query: 287 LSHNLHYSEDHGVLI-IIAIMVGMLFVQPIIGLLSDKWGRRPFIIVGSVGLFALAIPAFM 345 L H+ + +G+L+ + A+M P++G LSD++GRRP ++ V L A+ + Sbjct: 35 LVHSNDVTAHYGILLALYALM--QFACAPVLGALSDRFGRRPVLL---VSLAGAAVDYAI 89 Query: 346 LINSGVLGVIFAGLLIIAVLLNFFIGVMASTLPAMFPTHIR---YSALASAFNISVLIAG 402 + + L V++ G I+A + V + + + R + +++ F ++AG Sbjct: 90 MATAPFLWVLYIG-RIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFG-MVAG 147 Query: 403 LTPTLAAWLVESTGDLYMPAYYLMVIAAIGLITG-LTMKETAN 444 P L + + + P + + + +TG + E+ Sbjct: 148 --PVLGGLMGGFS--PHAPFFAAAALNGLNFLTGCFLLPESHK 186
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.2 bits (218), Expect = 3e-23 Identities = 66/250 (26%), Positives = 101/250 (40%), Gaps = 23/250 (9%) Query: 5 KVAIVIAGGSGMGAAAARRLAADGFNIGILSSSGKGEALAETLGGIGVTGSNQCNDDIK- 63 K+A + G+G A AR LA+ G +I + + + + + D++ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 64 -RLVDAVVAKW----GRIDVLVNSAGHGPRAPILEISDADWHQGMETYLLNVIRPTRLVT 118 +D + A+ G ID+LVN AG I +SD +W V +R V+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PIMQRQQGGVVINISTAWAFEPSEMFPTSAVFRAGLAAFSKIFADTYAADNIRINNVLPG 178 M ++ G ++ + + A P A +A F+K A NIR N V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 ----------WIDSLPAT-------DQRRDSVPLKRYGSSEEIAATVAFLASDGAAYITG 221 W D A + + +PLK+ +IA V FL S A +IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 222 QNIRVDGGIT 231 N+ VDGG T Sbjct: 249 HNLCVDGGAT 258
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.0 bits (75), Expect = 0.002 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Query: 112 TVQSAIAFTSLARGNVPAAICSAAASSLIGIFLTPLLVMLLLGAGGDTGSGLDAVLKITL 171 + +++ S +V + I +AA +SL+G ++ LV + G + +L+ + Sbjct: 363 AIDASLTTISTVLASVSSGISAAATTSLVGAPVS-ALVGAVTGI-------ISGILEASK 414 Query: 172 QLLVPFVAGQIARRWIGAWVKRNAR 196 Q + VA ++A I W K++ + Sbjct: 415 QAMFEHVASKMADV-IAEWEKKHGK 438
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.6 bits (118), Expect = 8e-10 Identities = 23/65 (35%), Positives = 35/65 (53%) Query: 1 MRYSTEHKQQTRDKLLASSGALAKRGGFASTGVAGLMKAIGLTGGAFYNHFPSKDDLFTE 60 R + + Q+TR +L + L + G +ST + + KA G+T GA Y HF K DLF+E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 VVRQE 65 + Sbjct: 62 IWELS 66
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.7 bits (170), Expect = 3e-16 Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 15/231 (6%) Query: 6 KVVLVIGAGDATGGEIAKRFSREGYIACVTRRQVDKLQPLVEEIRAAGGQAHGFASDARK 65 K+ + GA G +A+ + +G +KL+ +V ++A A F +D R Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 66 EDEVAELVETIERDIGPIEAFVFNIGANVPCSILEETPRKYFKIWEMACFAGFLTAQAVA 125 + E+ IER++GPI+ V G P I + ++ + + F +++V+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 126 RRMVVRERGTILFTGATAGTRGAAGFAAFAGAKHGLRALAQSMARELGPRNIHVAHVVVD 185 + M+ R G+I+ G+ AA+A +K + + EL NI ++V Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR-CNIVSP 187 Query: 186 GAIDTAFIRDSFPERYALKDQ--------------DGILDPAHIADSYWFL 222 G+ +T + + + + P+ IAD+ FL Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 92.2 bits (229), Expect = 1e-22 Identities = 77/334 (23%), Positives = 118/334 (35%), Gaps = 31/334 (9%) Query: 54 GAAVTVSGVVWVLLARPWGRAADRLGRRRILLLGSAGFTVAYWLLCLFVEGALRWIPGAS 113 G + + ++ A G +DR GRR +LL+ AG V Y ++ + Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIM------------ATA 93 Query: 114 LAFVGLMLARGCIGAFYAAIPVGCNALIADHIGPQQRARAMASLGAANAVGLVLGPAFAA 173 L + R + A A IAD +RAR + A G+V GP Sbjct: 94 PFLWVLYIGR-IVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGG 152 Query: 174 LLARHSLSLPFHVMSLLPASAFLVLLFKLKP------QPLAHRHAPSPVHLSDPRLRRP- 226 L+ S PF + L FL F L +PL R Sbjct: 153 LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVV 212 Query: 227 ---LLVAFSAMLSVTVSQIIVGFFALDRLQLGPAEAAQAAGIALTTVGVALILSQIILRQ 283 + V F L V + F DR GI+L G+ L+Q ++ Sbjct: 213 AALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT----TIGISLAAFGILHSLAQAMITG 268 Query: 284 L---EWPPLKMIRVGASVSGLGFAAGSLATSAPWLWGCYFVAAAGMGFVFPAFSALAANA 340 + + +G G G+ + AT + + A+G G PA A+ + Sbjct: 269 PVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQ 327 Query: 341 MHASEQGATAGSIGAAQGMGAVIGPLAGTLIYAL 374 + QG GS+ A + +++GPL T IYA Sbjct: 328 VDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 3e-15 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 537 GQRVLLIDDEHSLRTVMGEYLRERGFTVTDVRDANTALECFRQDGPFDLVITDIGLPGGL 596 G +L+ DD+ ++RTV+ + L G+ V +A T G DLV+TD+ +P Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-AGDGDLVVTDVVMPDE- 60 Query: 597 SGRQMARAMRTIKPDQKILYITGYVDQPLEPHILEMPGTALLIKPFELSTLADQALLLLD 656 + + ++ +PD +L ++ E L KPF+L+ L L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 657 E 657 E Sbjct: 121 E 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.0 bits (213), Expect = 6e-20 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 438 SGRTILVVEDDPDVRQLLCQTLKEQGFPYRSACNASEALQILRSSEAIDLLVSDVGLPGM 497 +G TILV +DD +R +L Q L G+ R NA+ + + + DL+V+DV +P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDE 60 Query: 498 NGRQLAEIARTLHPHLPILFITGYTETAMAREGFLGAGMQLMCKPFELAQFHARVMQILG 557 N L + P LP+L ++ A + + KPF+L + + + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 558 E 558 E Sbjct: 121 E 121 Score = 31.0 bits (70), Expect = 0.014 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 16/145 (11%) Query: 49 LTSAGIDCLCSRD----MAHLQDGLGSGAGLVVIDEHMLNSSQSGLLQDFIDQQPPWSDL 104 L+ AG D + + + G G LVV D M + + LL + DL Sbjct: 23 LSRAGYDVRITSNAATLWRWIAAGDG---DLVVTDVVMPDENAFDLLPRI---KKARPDL 76 Query: 105 PIVLLTQTPQPSASPCTPADHPLGNLTLLAIPFENEQLLELIKVALRHRRRQYLARDQLL 164 P+++++ + G L PF+ +L+ +I AL +R+ + Sbjct: 77 PVLVMSAQNTFMTAI---KASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDS 133 Query: 165 DLQQRLEAHSEAQQSTEQARHQTRK 189 L S A Q + + Sbjct: 134 QDGMPLVGRSAAMQ---EIYRVLAR 155
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1099 bits (2845), Expect = 0.0 Identities = 433/1048 (41%), Positives = 647/1048 (61%), Gaps = 25/1048 (2%) Query: 4 SKFFITRPIFAAVLSLVLLIAGSISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETV 63 + FFI RPIFA VL+++L++AG++++ QLP+++YP + PP V V AN+PGA+ + + +TV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 AAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKLPEE 123 +EQ + G++N++YMSS S + G +T+T+TF GTD D AQVQVQN++ P LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVGDVQLFGMG 183 V + GI+V+K+S MV S + +S+Y N+KD L+RL GVGDVQLFG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 DYSLRVWLDPNKTASRNLTAGDVVAAIREQNRQVAAGQLGAPPAPGSTSFQLSINTQGRL 243 Y++R+WLD + LT DV+ ++ QN Q+AAGQLG PA SI Q R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 VNEEEFENIIIRAGADGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGSNAI 303 N EEF + +R +DG + RLKD+ARVELG Y + + +N +PA + I G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 EISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEAVVHTLFEALVLVVLVVILFLQ 363 + + ++AK+AEL+ FP+GM YD T FV+ SI VV TLFEA++LV LV+ LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 TWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVER-N 422 RA++IP +AVPV L+GTFA++ FG+S+N L++FG+VLAIG++VDDAIVVVENVER Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 IGLGLKPLEATQKAMGEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVI 482 + L P EAT+K+M ++ G ++ A+VL AVF+P AF G TG Y+QF++TI + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SAFNSLTLSPALAAVLLK----DHHAPKDRFSRLLEKLLGSWLFAPFNRFFDRASHSYVG 538 S +L L+PAL A LLK +HH K F F FN FD + + Y Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGF------------FGWFNTTFDHSVNHYTN 528 Query: 539 GVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQDKQYLVAFAQLPDAASLDRTEA 598 V +++ S+G L +YA ++ + F P+ F+P +D+ + QLP A+ +RT+ Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 599 VIKRMSEIALKQPGVADSVAF--PGLSINGFTNSPNSGIVFTPLKPFDERKDPSQSAAAI 656 V+ ++++ LK F G S +G + N+G+ F LKP++ER SA A+ Sbjct: 589 VLDQVTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAV 646 Query: 657 AAALNAQFADIQDAYIAIFPPPPVQGLGTIGGFRLQIEDRGNLGYEALYKETQNIIAK-S 715 + I+D ++ F P + LGT GF ++ D+ LG++AL + ++ + Sbjct: 647 IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAA 706 Query: 716 HNVPELAGLFTSYQVNVPQVDAAIDREKAKTHGVAITDIFDTLQVYLGSLYTNDFNRFGR 775 + L + + + Q +D+EKA+ GV+++DI T+ LG Y NDF GR Sbjct: 707 QHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGR 766 Query: 776 TYQVNVQAEQQFRLDAEQIGQLKVRNNLGEMIPLATFLKVSDTSGPDRVMHYNGFITAEI 835 ++ VQA+ +FR+ E + +L VR+ GEM+P + F G R+ YNG + EI Sbjct: 767 VKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEI 826 Query: 836 NGAAAPGYSSGQAEAAIEKLLNEELPNGMTFEWTDLTYQQILSGNTALLVFPLCVLLAFL 895 G AAPG SSG A A +E L + +LP G+ ++WT ++YQ+ LSGN A + + ++ FL Sbjct: 827 QGEAAPGTSSGDAMALMENLAS-KLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFL 885 Query: 896 VLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIV 955 LAA YESWS+P++V+L+VP+ ++ + + N+++ +GL+ +GL+ KNAILIV Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 956 EFAKDEQAK-GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVA 1014 EFAKD K G + A L A R+RLRPILMTS+AFI+GV+PL S+GAGS ++A+G+ Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 1015 VFSGMIGVTVFGLFLTPVFFFLIRRFVE 1042 V GM+ T+ +F PVFF +IRR + Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRCFK 1033 Score = 83.3 bits (206), Expect = 3e-18 Identities = 65/322 (20%), Positives = 125/322 (38%), Gaps = 20/322 (6%) Query: 739 IDREKAKTHGVAITDIFDTL-----QVYLGSLYTNDFNRFGRTYQVNVQAEQQFRLDAEQ 793 +D + + + D+ + L Q+ G L G+ ++ A+ +F+ + E+ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASIIAQTRFK-NPEE 245 Query: 794 IGQLKVRNNL-GEMIPLATFLKVSDTSGPDRVM-HYNGFITAEINGAAAPGYSSGQ-AEA 850 G++ +R N G ++ L +V V+ NG A + A G ++ A+A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 851 AIEKL--LNEELPNGM----TFEWTDLTYQQILSGNTALLVFPLCVLLAFLVLAAQYESW 904 KL L P GM ++ T I L ++L FLV+ ++ Sbjct: 306 IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF---EAIMLVFLVMYLFLQNM 362 Query: 905 SLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDEQAK 964 L + VP+ LL + G N T G+++ +GL +AI++VE + + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 965 -GLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEMRHAMGVAVFSGMIGVT 1023 L P A ++ ++ ++ +P+ F G+ + + + S M Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 1024 VFGLFLTPVFFFLIRRFVERRQ 1045 + L LTP + + V Sbjct: 483 LVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 3e-09 Identities = 19/102 (18%), Positives = 42/102 (41%) Query: 65 EVRPRVSGQIDLVGFTEGAQVKKGDLLFQIDPRPFQAEVRRLEAQLQQAKATAIRSANEA 124 E++P + + + EG V+KGD+L ++ +A+ + ++ L QA+ R + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 125 RRGERLRDSNAISAELAESRSSAAAEARAGVDAIQAQLDLAR 166 R E + + ++ + E I+ Q + Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ 199 Score = 39.8 bits (93), Expect = 1e-05 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 9/115 (7%) Query: 104 RRLEAQLQQAKATAIRSANEARRGERLRDSNAISAELAESR-------SSAAAEARAGVD 156 LE + + +A +++ + + + E + + Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIG 312 Query: 157 AIQAQLDLARLNLSFTRVTAPISGRVSRAQ-YTAGNIVTADVTPLTSVVSTDKVY 210 + +L + + AP+S +V + + +T G +VT L +V D Sbjct: 313 LLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA-ETLMVIVPEDDTL 366
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 6e-04 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 3/140 (2%) Query: 36 AASGMADDLKITPALSSLLGALFFLGYFFFQVPGAIYAQKRSVKKLIFVSLILWGSLATL 95 + +A+D PA ++ + F L + + + +K+L+ +I+ ++ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINC-FGSV 94 Query: 96 TGMVSNVY--LLIGIRFLLGVVEAAVMPAMLVYLCHWFTRAERSRANTFLMLGNPVTILW 153 G V + + LLI RF+ G AA ++V + + + R +A + + Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 154 MSVVSGYLIKHFDWRWMFII 173 + G + + W ++ +I Sbjct: 155 GPAIGGMIAHYIHWSYLLLI 174
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 52.1 bits (125), Expect = 2e-09 Identities = 75/374 (20%), Positives = 129/374 (34%), Gaps = 20/374 (5%) Query: 28 FAIGTGEFAIMGLMPDIAGNLQLSEPQVGHA---ISAYALGVVVGAPALAILGAKLLRKH 84 G IM ++P + +L S H ++ YAL AP L L + R+ Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 85 MLLLLMALYAVGNLATAFAPSFAGLVAFRFISGLPHGAYFGIAAVVASSMVPSNQRAGAV 144 +LL+ +A AV A AP L R ++G+ GA +A + + ++RA Sbjct: 75 VLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHF 133 Query: 145 ARVMMGLTLAMLLGNPVATLLGQYFGWRSAFLLVGLIAVCTIALVWQYVPQ----RRDEA 200 + M+ G + L+G + + F + +P+ R Sbjct: 134 GFMSACFGFGMVAGPVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPL 192 Query: 201 RSDPRKELKAFTLPQVWMALAIASIGFAGMFCVFSYLAPTMLEVTQVAPQW----IPFGL 256 R + L +F + +A F M V A + + W I L Sbjct: 193 RREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISL 252 Query: 257 AAFGIGGIIGNI-AGGKLFDRL-QFRAVGIVLVWSTAVLLFFTFAAHALWTLLLGIGLVG 314 AAFGI + G + RL + RA+ + ++ + FA + + L Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS 312 Query: 315 TMIALAAPLQIRLMDIAHEAPSLAAASNHAAFNLANALGPWFGGMAISAGLGWTSTGYIG 374 I + A + + E S A +L + +GP +A S Sbjct: 313 GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA-----SITTWN 367 Query: 375 AAAALVGLGIYAVA 388 A + G +Y + Sbjct: 368 GWAWIAGAALYLLC 381
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 4e-11 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 3/93 (3%) Query: 731 ARVLILEDQLVIAVGLEQILADAQVQDVLTASSEAEALKLLASHTPDVAVLDINLGTGTS 790 A +L+ +D I L Q L+ A DV S+ A + +A+ D+ V D+ + + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 791 IAVAEALTSL--GIPFLFATGYGDSLNIPDHLK 821 + + +P L + + + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASE 95
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 30.2 bits (68), Expect = 0.010 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%) Query: 135 AGWYLPMELDDLHFRDTARRQALYSQLQAFNQQLDKPLHISAFTAGKLAPRVNG----AW 190 W ++ + + A+ ++L L F D + +S K++ + + Sbjct: 23 YSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDF 82 Query: 191 LDQLAGLGVSVWWQDGT 207 L +A L VW+ DG Sbjct: 83 LQHIASLYNLVWYYDGN 99
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.004 Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 39/185 (21%) Query: 259 ELDELVLELLSYSRLYNADQARERVEVSL---LELVDSVLG----SFAEELDSRGIEWEV 311 + E++ L R Y+ + R +VSL L +VDS L F + L + Sbjct: 192 KAREMLTSLSELMR-YSLRYSNAR-QVSLADELTVVDSYLQLASIQFEDRLQFE-NQINP 248 Query: 312 RADG-SLPRFVLDPRLTARAVQNLVRNGMRYCDQSLLLRLR-LEEDGACLLTVEDDGIGI 369 +P ++ V+N +++G+ Q + L+ +++G L VE+ G Sbjct: 249 AIMDVQVPPMLVQT-----LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA 303 Query: 370 PVEERERIFQPFYRLDRSRDRNTGGFGLGLAISRRAIE---GQGGTLTVAQSALGGAQFM 426 +E G GL R ++ G + ++ G M Sbjct: 304 LKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLS-EKQGKVNAM 344 Query: 427 IRLPA 431 + +P Sbjct: 345 VLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 1e-21 Identities = 29/136 (21%), Positives = 62/136 (45%) Query: 2 PNILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLPGIDGL 61 IL+ +DD+A+ ++ L R + VR+ + + DLV+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 QVCRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121 + +++ LP+L+++A++ + E GA DY+ KP + L+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 VHEPRLDSEQILVGGL 137 +L+ + L Sbjct: 124 RRPSKLEDDSQDGMPL 139
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 30/206 (14%), Positives = 75/206 (36%), Gaps = 33/206 (16%) Query: 64 RTAEVRARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAQANLY--- 120 R+ E++ +V + + +EG V++GDVL + +AD +++L +A+ Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 ------------QARLQEQRYRELVDDKAVSRQEYDNARAAFLQADAEVAAAKAALERAR 168 + +L ++ Y + V ++ V R + F + + L++ R Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLT-SLIKEQFSTWQNQKYQKELNLDKKR 213 Query: 169 LNLGYATVTAPISGRIG------------RALVTEGALVGQNETTPLATIQQLDPIHADV 216 TV A I+ +L+ + A + ++ L + ++ Sbjct: 214 AER--LTVLARINRYENLSRVEKSRLDDFSSLLHKQA-IAKHAV--LEQENKYVEAVNEL 268 Query: 217 TQSTRELNTLRRALRAGELQQAGNGE 242 +L + + + + + + Sbjct: 269 RVYKSQLEQIESEILSAKEEYQLVTQ 294 Score = 34.8 bits (80), Expect = 5e-04 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 6/99 (6%) Query: 108 ARATLAKAQANLYQARLQ----EQRYRELVDDKAVSRQEYDN-ARAAFLQADAEVAAAKA 162 +A L + Q E ++ + Q + N Q + Sbjct: 257 QENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTL 316 Query: 163 ALERARLNLGYATVTAPISGRIGRALV-TEGALVGQNET 200 L + + + AP+S ++ + V TEG +V ET Sbjct: 317 ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1128 bits (2919), Expect = 0.0 Identities = 539/1031 (52%), Positives = 733/1031 (71%), Gaps = 7/1031 (0%) Query: 1 MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDES 60 M FFI RP+FAWV+A+ +++AGALAI QLPVAQYP +APP V + A YPGA A T+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VVSLIEQELNGADNLLYFESQS-SLGSATITATFEPGTHPDLAQVDVQNRLKVVESRLPR 119 V +IEQ +NG DNL+Y S S S GS TIT TF+ GT PD+AQV VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVTQQGLQVEKVSTGFLLLGTLTSEDGSLDETALSDILARNVMNEIRRLKGVGKAQLYGS 179 V QQG+ VEK S+ +L++ S++ + +SD +A NV + + RL GVG QL+G+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 ERAMRIWIDPGKLIGFSLTPNDVANAIAAQNAQVAPGSIGDLPARSTQEITANVVVKGQL 239 + AMRIW+D L + LTP DV N + QN Q+A G +G PA Q++ A+++ + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 STPEEFSAIVLRANPDGSTVTIGDVARVEIGAQEYQYGTRLNGKPASAFSVQLAPGANAM 299 PEEF + LR N DGS V + DVARVE+G + Y R+NGKPA+ ++LA GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ETATLVRAKMQELSVYFPEGVKYDIPYDTSPFVKVSIQQVISTLFEAMLLVFAVMFLFLQ 359 +TA ++AK+ EL +FP+G+K PYDT+PFV++SI +V+ TLFEA++LVF VM+LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRYTLIPTLVVPVALMGTFAVMLALGFSVNVLTLFGMVLAIGILVDDAIVVVENVERIM 419 N+R TLIPT+ VPV L+GTFA++ A G+S+N LT+FGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 AEEGLPPKEATRKAMGQISGAIIGITLVLVAVFLPMAFMKGSVGVIYQQFSLSMAVSILF 479 E+ LPPKEAT K+M QI GA++GI +VL AVF+PMAF GS G IY+QFS+++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLTPLPKGEHHESKGFFGWFNRNFERMSSGYERWVVQALKRSGRY 539 S +AL LTPALCATLL P+ H GFFGWFN F+ + Y V + L +GRY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 LLVYGVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIE--AHNA 597 LL+Y +++A + F +LP++FLP EDQG +T IQLP GA++ RT++V Q+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 QEPGVGNTTVILGFSFSGSGQNAALTFTTLKDWSER-GADDSAQSIADRANAAFSRIRDA 656 ++ V + + GFSFSG QNA + F +LK W ER G ++SA+++ RA +IRD Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 VAFSVLPPPIDGLGESTGFELRLQDRGGMGHAALMAARDELLAGAGKSKV-LVNVREASL 715 P I LG +TGF+ L D+ G+GH AL AR++LL A + LV+VR L Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 AESPQVQLEIDRRQANALGISFADIGAVLDTAVGSNYVNDFPNQGRMQRVVVQAEGDQRS 775 ++ Q +LE+D+ +A ALG+S +DI + TA+G YVNDF ++GR++++ VQA+ R Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 QVEDLLKIHVRNSSGKMVPLGAFVQAKWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAM 835 ED+ K++VR+++G+MVP AF + WV G +L RYNG P++ I GE A G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AEVERLVAQLPAGAGLEWTGLSLQERLSGSQAPLLMALSLLVVFLCLAALYESWSIPTAV 895 A +E L ++LPAG G +WTG+S QERLSG+QAP L+A+S +VVFLCLAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 LLVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKSLVD-QGVDAV 954 +LVVPLG++G +LA TL NDV+F VGL+T IGLSAKNAILI+EFAK L++ +G V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAAVQAARLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMLSAT-LAVVF 1013 +A + A R+RLRPI+MTSLAFILGV+PLAI+ GA S +Q A+G GV+GGM+SAT LA+ F Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1014 VPVFFVVVMRL 1024 VPVFFVV+ R Sbjct: 1021 VPVFFVVIRRC 1031
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 71.1 bits (174), Expect = 3e-16 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 134 LNSSLLFGSGDAMPSDKAFDIIEKVANILK---PFANPVHVEGFTDNLPIRTAQYPTNWE 190 L S +LF A + ++++ + L P V V G+TD I + Y N Sbjct: 217 LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQG 272 Query: 191 LSSARAASIVRLLAMEGVNPARMASVGYGEYQPVAGNDTAEGRAR---------NRRVVL 241 LS RA S+V L +G+ ++++ G GE PV GN + R +RRV + Sbjct: 273 LSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI 332 Query: 242 VI 243 + Sbjct: 333 EV 334
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 58.7 bits (142), Expect = 1e-11 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 19/166 (11%) Query: 2 AVKVLVVDDSGFFRRRVSEILS-ADPTIQVVGTATNGREAIDQALALKPDVITMDYEMPM 60 +LV DD R +++ LS A +++ A I D++ D MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD---GDLVVTDVVMPD 59 Query: 61 MDGITAVRHIMQRCP-TPVLMFSSLTHEGARVTLDALDAGAVDYLPKNF--EDISRNPEK 117 + + I + P PVL+ S+ + A + GA DYLPK F ++ + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 118 VKQMLCEKVHTLSRSNRRFGGYANTAAA----------AAPAPASV 153 + L ++ +AA ++ Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>PF06580#Sensor histidine kinase Length = 349 Score = 42.2 bits (99), Expect = 5e-06 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 10/72 (13%) Query: 447 ETDLDKNLVEALADPLV--HLVRNAVDHGVEMPEEREASGKARTGRVVLSAEQEGDHILL 504 E ++ +++ P++ LV N + HG+ + G+++L ++ + L Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTL 294 Query: 505 SISDDGKGMDPN 516 + + G N Sbjct: 295 EVENTGSLALKN 306
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 5e-25 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 6 KILIVDDFSTMRRIIKNLLRDLGFTNTEEADDGTTALPMLESGHYDFLVTDWNMPGMSGI 65 IL+ DD + +R ++ L G+ + T + +G D +VTD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 66 DLLRKVRAHDRLKAMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 125 DLL +++ +PVL+++A+ I+A++ G Y+ KPF L I + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 269 bits (690), Expect = 1e-93 Identities = 137/241 (56%), Positives = 183/241 (75%), Gaps = 1/241 (0%) Query: 12 LLMLALLLAAPLALAADPLSIPAITLSNGPDGQQEYSVSLQILLIMTALSFIPAFVILMT 71 LL +A +L + A +P IT P G Q +S+ +Q L+ +T+L+FIPA +++MT Sbjct: 4 LLSVAPVLLWLITPLAFA-QLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62 Query: 72 SFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMT 131 SFTRIIIVF +LR ALG P NQVL G+ALFLT FIM+PV D++ DA QP+ +E+++ Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122 Query: 132 AQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSKRTDIAGPDQVPLTILVPAFVTSELKTA 191 Q+A++K PL++FML QTR++DL LF RL+ + GP+ VP+ IL+PA+VTSELKTA Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTA 182 Query: 192 FQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGS 251 FQIGF IFIPFLIID+V+ASVLMA+GMMM+ P I+LPFK+MLFVLVDGW L++G+LA S Sbjct: 183 FQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQS 242 Query: 252 F 252 F Sbjct: 243 F 243
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 120 bits (302), Expect = 6e-38 Identities = 64/154 (41%), Positives = 96/154 (62%), Gaps = 20/154 (12%) Query: 1 MANENEITSPEDQALADEWAAAL-EETGDAGQADIDALLGGDGGSAGAGRLPMEEFASSP 59 M++ N + AL D WA AL E+ ++ DA+ GG +G + Sbjct: 1 MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQ-------- 52 Query: 60 RPKENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLV 119 ++D+I+DIPV +++E+G T + I+ LL+L QGSV+ LD LAGEPLD+L+ Sbjct: 53 -----------DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILI 101 Query: 120 NGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL 153 NG LIA GEVVVV +K+G+R+TD+I+PSER+++L Sbjct: 102 NGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 254 bits (651), Expect = 3e-85 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 9/324 (2%) Query: 5 DLLSQDEIDALLHGVDDGLVQTESAAEPGSIKS---YDLTSQDRIVRGRMPTLEMINERF 61 ++LSQDEID LL + G E A + YD D+ + +M TL +++E F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAK 121 AR T S+ LR V V V + + E++ S+ P++L ++ + PL+G ++ +D Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQCFIDLKEAWQAIMPVNFEYMNS 181 + F ++D FGG G+ AK++ R+ T E V+ V+ + +++E+W ++ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ-RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQI 181 Query: 182 EVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGF--QSDLDD 239 E NP A IV PSE VV+ T ++ G ++ +PY IEP+ L + F S Sbjct: 182 ETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRS 241 Query: 240 QDERWVKALREDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVE---LPEHLVLRANG 296 +++ LR+ + V + + A V +L +RD+L ++ GD+I + + + VL Sbjct: 242 STTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGN 301 Query: 297 VPSFKARLGSHKGNLALQIIDPIE 320 F + G +A QI++ IE Sbjct: 302 RKKFLCQPGVVGKKIAAQILERIE 325
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 48.3 bits (114), Expect = 3e-08 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 7/221 (3%) Query: 216 TLMDKVEAEAGQSESGDKAFGALLEDGLKDTKSASSDTRIDDFANRL-ASLTQAATAKTA 274 TL K+ +E + D A G + A S + + + A+ + T Sbjct: 161 TLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQT 220 Query: 275 NAVPVTGNPLHQPLPMNQNAWAEGLVNRVMYLSSQNLKSADIQLEPAELGRLDIRVNVAA 334 +P P+ P+ + W + L + + Q +SA+++L P +LG + I + V Sbjct: 221 QPLPTVAAPVLSA-PLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDD 279 Query: 335 DQATQVTFISGHAGVRDALDSQVHRLRELFAQQGLAQPDVNVADQSRGQQQQAQQDGSQL 394 +QA Q+ +S H VR AL++ + LR A+ G+ N++ +S QQQA Q Sbjct: 280 NQA-QIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQ- 337 Query: 395 SGVAARRAQNGGGTEQGELADASRPVEQQVVVGDSAVDFYA 435 + R A + + + Q V G+S VD +A Sbjct: 338 ---SQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA 375
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 26.2 bits (57), Expect = 0.037 Identities = 11/27 (40%), Positives = 19/27 (70%) Query: 70 HQLEERVKQRSLYGIEELINRIDQEYL 96 H +E+R K R L I E +NR+++E++ Sbjct: 706 HLVEQREKLRELTTIAERLNRLEREWM 732
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 1e-16 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 9 TVLVAEDGATDRLLLAQIVRRQGHHVYTAENGQQAVELFAEKRPQLVLLDALMPVMDGFE 68 T+LVA+D A R +L Q + R G+ V N A LV+ D +MP + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 AARQIKALAGEALVPIIFLTSLNEEEALVRCLEAGGDDFMAKPYSA-VILGAKIRAMDRL 127 +IK + +P++ +++ N ++ E G D++ KP+ ++G RA+ Sbjct: 65 LLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 128 RRLQATVLEQRD 139 +R + + + Sbjct: 123 KRRPSKLEDDSQ 134
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 51.4 bits (122), Expect = 4e-11 Identities = 39/134 (29%), Positives = 70/134 (52%) Query: 10 LAPVVQMAEEAERKAAQRLGHFQQLVAQAQAKLAELESFREGYQAQWIDRGGQGVNGSWL 69 LA + +AE+ AA+ LG ++ QA+ +L L ++ Y+ G+ + Sbjct: 7 LATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAGITSNRW 66 Query: 70 VNYQRFLGQLETAMTQQRQSLTWHQNNLKNARGTWQQAYARVEGLRKLVQRYLEEARRAE 129 +NYQ+F+ LE A+TQ RQ L + A +W++ R++ + L +R A AE Sbjct: 67 INYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAE 126 Query: 130 DKREQRLLDELSQR 143 ++ +Q+ +DE +QR Sbjct: 127 NRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 56.3 bits (135), Expect = 9e-12 Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 18/201 (8%) Query: 36 PEPEPEIIEEEVEEVPLEEVQPLTLEELEAIRQEAYNEGFATGEREGFHSTQLKVRQEA- 94 P + E EE +EE +P ++L ++ +A+ +G+ G EG + QE Sbjct: 17 PPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGL 76 Query: 95 EEALNARLAD-----------LEQLMAHLLEPIAEQDTQIEKTLVHLVAHMARQVIGREL 143 + L LA+ ++QL++ + D+ I L+ + ARQVIG+ Sbjct: 77 AQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTP 136 Query: 144 RSDSSQITQVLREALKLLPMGADNIRIHLNPQDF----ELAKALRERHEESWKLLEDDAL 199 D+S + + +++ L+ P+ + ++ ++P D ++ A H W+L D L Sbjct: 137 TVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLH--GWRLRGDPTL 194 Query: 200 LPGGCRIETAHSRIDATMETR 220 PGGC++ +DA++ TR Sbjct: 195 HPGGCKVSADEGDLDASVATR 215
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 306 bits (785), Expect = e-105 Identities = 108/330 (32%), Positives = 204/330 (61%) Query: 10 KLSRTDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMAQMGNVHREQVQQVMSEFVEI 69 L+ KAAILL+S+G +++V +++ +E++ + +A++ + E V+ EF E+ Sbjct: 14 ALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKEL 73 Query: 70 VGDQTSLGVGSDGYIRKMLNQALGEDKANGLIDRILLGGNTSGLDSLKWMEPRAVADVIR 129 + Q + G Y R++L ++LG KA +I+ + + + ++ +P + + I+ Sbjct: 74 MMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQ 133 Query: 130 FEHPQIQAIVVAYLDPDQAGEVLSNFDHKVRLDIILRVSSLNTVQPAALKELNQILEKQF 189 EHPQ A++++YLDP +A +LS+ +V+ ++ R++ ++ P ++E+ ++LEK+ Sbjct: 134 QEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKL 193 Query: 190 SGNSNAARTTLGGIKRAADIMNFLDSSVEGALMDSIREVDNDLSEQIEDLMFVFNNLADV 249 + S+ T+ GG+ +I+N D E +++S+ E D +L+E+I+ MFVF ++ + Sbjct: 194 ASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLL 253 Query: 250 DDRGIQALLREVSSDVLVVSLKGADERVKDKIFKNMSKRASELLRDDLEAKGPVRVSDVE 309 DDR IQ +LRE+ L +LK D V++KIFKNMSKRA+ +L++D+E GP R DVE Sbjct: 254 DDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVE 313 Query: 310 TAQKEILTIARRMAEAGEIVLGGKGAEEMI 339 +Q++I+++ R++ E GEIV+ G E+++ Sbjct: 314 ESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 530 bits (1367), Expect = 0.0 Identities = 199/572 (34%), Positives = 304/572 (53%), Gaps = 35/572 (6%) Query: 28 LENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLAAA 87 LE ++++ ++ L+V +A+VAI A+VLW++ PDYR L+ +L+ D ++ L Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 88 DIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEATR 147 +IPY SGA+ V AD + RL+LA G+ P G VGFELLD+E+ G SQF E Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGL-PKGGAVGFELLDQEK-FGISQFSEQVN 130 Query: 148 YRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRSLEAGQV 207 Y+R+LEGELART+ +L VK+ARVHLA+PK S+FVR+++ PSASV V L PGR+L+ GQ+ Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 208 MAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALTMAGKQFDYSRRMEGMLTQRVH 267 A+V+LV+++V L VT+VDQ G+LL+ + + Q ++ +E + +R+ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSN-TSGRDLNDAQLKFANDVESRIQRRIE 249 Query: 268 NILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPA----LRSEQSVNEQRASSSGPQ 323 IL P++GN A+V+A LDF+ E T E ++P+ A LRS Q ++ + P Sbjct: 250 AILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPG 309 Query: 324 GVPGALSNQPPAGAAAPENATAAAPAAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPAD 383 GVPGALSNQP AP P N Q +T + P Sbjct: 310 GVPGALSNQPAPPNEAPIAT-------------PPTNQQNAQNTPQTSTSTNSNSAGPRS 356 Query: 384 KRLQTTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKVDAAGETTRAPWGAEDLARFT 443 + T N+E+DR+I HT+ G + RLSVAVVV+ + D P A+ + + Sbjct: 357 TQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPL----PLTADQMKQIE 412 Query: 444 RLVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAFYQQPWFWDIVKQVLGVVFILVLV 503 L ++A+GF RGD++ V+N PF+A ++ F+QQ F D + + +LV+ Sbjct: 413 DLTREAMGFSDKRGDTLNVVNSPFSA-VDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVA 471 Query: 504 F----GVLRPVLNNITGGGKQAAATDSDMELGGMIGLDGELANDRVSLGGPTSILLPSPS 559 + +RP L K A + ++ L+ D + L Sbjct: 472 WILWRKAVRPQLTRRVEEAKAAQEQAQVRQ-ETEEAVEVRLSKDEQLQQRRANQRL---- 526 Query: 560 EGYEAQLNAIKGLVAEDPGRVAQVVKEWINAD 591 G E I+ + DP VA V+++W++ D Sbjct: 527 -GAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 76.2 bits (187), Expect = 1e-21 Identities = 44/94 (46%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 17 MQADAMSLPKATAAPELAEGQSSFADMLGQAIGKVHQTQQASTQLANAFEIGKSGVDLTD 76 +QA AMS + P+ SFA L A+ ++ TQ A+ A F +G+ GV L D Sbjct: 13 LQATAMSARAQESLPQ---PTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALND 69 Query: 77 VMIASQKASVSMQALTQVRNKLVQAYQDIMQMPV 110 VM QKASVSMQ QVRNKLV AYQ++M M V Sbjct: 70 VMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 478 bits (1232), Expect = e-169 Identities = 174/481 (36%), Positives = 253/481 (52%), Gaps = 32/481 (6%) Query: 3 IKVLLVEDDRALRQALGDTLEIGGFAYRAVGSAEEALEAVQRDAYSLVISDVNMPGMDGH 62 +L+ +DD A+R L L G+ R +A + LV++DV MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 QLLAHLRRQHPQLPVLLMTAHAAVERAVEAMRQGAVDYLVKPFEP--------KALLSLV 114 LL +++ P LPVL+M+A A++A +GA DYL KPF+ +AL Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 115 ERHAAGRLSAAEDDGPVACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQ 174 R + + + V A +++ + AR+ ++D T++I+GESGTGKE++AR +H Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 175 SPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEM 234 R PFVAIN AAIP +++E+ LFGHEKGAFTGA G+FEQAEGGTL LDEI +M Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 235 PLGLQAKLLRVLQEREVERVGGRKPIALDIRVLATSNRDMAGEVAAGRFREDLFYRLSVF 294 P+ Q +LLRVLQ+ E VGGR PI D+R++A +N+D+ + G FREDL+YRL+V Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 295 PLAWQPLRERAGDILPLAERLLARHVAKMKHAPVRLSAAAQACLQAHGWPGNVRELDNAL 354 PL PLR+RA DI L + + K R A ++AH WPGNVREL+N + Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRELENLV 362 Query: 355 QRALILQQGGVIEAADFCL-----------------AGAIPLSAVAP---VTALPVAVEP 394 +R L VI +G++ +S + Sbjct: 363 RRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422 Query: 395 AGEVGGLGDDMRRHEFQMIIDTLRAERGRRKEAAERLGISPRTLRYKLAQMRDAGLDVEA 454 G + E+ +I+ L A RG + +AA+ LG++ TLR K +R+ G+ V Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKK---IRELGVSVYR 479 Query: 455 S 455 S Sbjct: 480 S 480
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 504 bits (1300), Expect = e-179 Identities = 180/488 (36%), Positives = 256/488 (52%), Gaps = 10/488 (2%) Query: 5 TKILLIDDDSARRRDLAVVLNFLGEENLPCSSQDWQQVVGALSSSREVLCVLIGTVDAPG 64 IL+ DDD+A R L L+ G + S+ + +++ + V+ V Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNA--ATLWRWIAAG-DGDLVVTDVVMPDE 60 Query: 65 NVLGLLKTVAGWDEFLPVLLIGEISSAD-FPEELRRRVLANLEMPPSYSQLLDSLHRAQV 123 N LL + LPVL++ ++ + + L P ++L+ + RA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 124 YREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVV 183 + R + + LVG S A+Q + +++ ++ TD +++I GESGTGKE+V Sbjct: 121 EP----KRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 184 ARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLF 243 AR LH + KRR PFV +N AIP +L+ESELFGHEKGAFTGA T GRFE A GGTLF Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 244 LDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEGGTFREDL 303 LDEIGDMP+ Q +LLRVLQ+ + VG DVRI+AAT+K+L+ I G FREDL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 304 YYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPGNVR 363 YYRLNV P+ + PLR+R EDIP L+ + + E E RF+ ++ + H WPGNVR Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVR 356 Query: 364 ELANLVERMAIMHPYGVIGVSELPKKFRY-IDDEDEQLVDSLRSDLEERVAINGHAPS-F 421 EL NLV R+ ++P VI + + R I D + + L A+ + F Sbjct: 357 ELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYF 416 Query: 422 ANHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGMS 481 A+ P L +E LI AL G +AA+ L + R TL +K+R+ G+S Sbjct: 417 ASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476 Query: 482 RQGGEEQA 489 A Sbjct: 477 VYRSSRSA 484
>INTIMIN#Intimin signature. Length = 939 Score = 31.2 bits (70), Expect = 0.011 Identities = 50/250 (20%), Positives = 81/250 (32%), Gaps = 30/250 (12%) Query: 97 VNG-SYSIQVTQLATASRVASQRFTDSSSVVSASGGTLTIT--QNSVDFDVTIPANATLQ 153 +NG S Q QL S+ R S + + GG + + Q++ D+ +PA +Q Sbjct: 462 INGTERSTQKIQLIVKSKYGLDRIVWDDSALRSQGGQIQHSGSQSAQDYQAILPA--YVQ 519 Query: 154 QARDAINAQASGKGFTANIVNDGTGSRLVLSSETMGEGSDISTSGIADLTIDPAAQMTDA 213 + A N N+ + VLS+ + + G+ D T D + D Sbjct: 520 GGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQV-----VDQVGVTDFTADKTSAKADG 574 Query: 214 GGAGRIGDLAKDAEFD----------IDGMKLTSKSNKVDNAISGMTFELLSKTETLSPV 263 A K + G + S ++ N T L S V Sbjct: 575 TEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVV 634 Query: 264 SVTVTANTDGLKKSVQSFVDAYNALVNTINSVSVSTKAADGSWNTPALSGDPAVRSMLTA 323 S T L + FVD A +I + A +G A+ + Sbjct: 635 SAKTAEMTSALNANAVIFVDQTKA---SITEIKADKTTAVA-------NGQDAITYTVKV 684 Query: 324 MRNELVVSGT 333 M+ + VS Sbjct: 685 MKGDKPVSNQ 694
>FLAGELLIN#Flagellin signature. Length = 507 Score = 103 bits (257), Expect = 5e-27 Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 5/274 (1%) Query: 2 ALTVNTNTTSLGVQKNLNKASDALSTSMTRLSSGLRINSAKDDAAGQQIANKLQTMVTGT 61 A +NTN+ SL Q NLNK+ +LS+++ RLSSGLRINSAKDDAAGQ IAN+ + + G Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 TVAIKNANDGNSITQTAEGALSEITNILQRMRELALQARNDSNGTTERAALNKEFAAKSD 121 T A +NANDG SI QT EGAL+EI N LQR+REL++QA N +N ++ ++ E + + Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 EITRIATSTTFGTSKQLLNGTAGTMEFQVGAMTGTSQILSVSMTSSFAASTLAVGTGTLA 181 EI R++ T F ++L+ M+ QVGA G + + + +L + + Sbjct: 121 EIDRVSNQTQFNG-VKVLSQD-NQMKIQVGANDGETITIDLQKIDV---KSLGLDGFNVN 175 Query: 182 ISGTSDSAVHTSVDAAITAIDAALQTVDTKKSDLGAIQNRFQSTINNLQSMNENSAAAMG 241 + S +T D + + D+ + +T + +AA Sbjct: 176 GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQ 235 Query: 242 RVQDTDFAAETAQLTKQQTLQQASTSVLAQANQL 275 D L K + A A + Sbjct: 236 LTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAI 269 Score = 75.5 bits (185), Expect = 2e-17 Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 14/292 (4%) Query: 6 NTNTTSLGVQKNLNKASDALSTSMTRLSSGLRINSAKDDAAGQQIANKLQTMVTGTTVAI 65 +T ++ + +N A+ L+T ++ + + AG A + + G Sbjct: 217 DTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD 276 Query: 66 KNANDGNSITQTAEGALSEITNILQRMRELALQARNDSNGTTERAALNKEFAAKSDEITR 125 G + T + + + + ++ T A ++ S + Sbjct: 277 TFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTL-TVADITAGAANVDAATLQSSKNVYT 335 Query: 126 IATSTTFGTSKQLLNGTAGTMEFQVGAMTGTSQILSVSMTSSFAASTLAVGTGTLAISGT 185 + F + N +A + + ++V+ A + T Sbjct: 336 SVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFI 395 Query: 186 SDSAVHTSV-------------DAAITAIDAALQTVDTKKSDLGAIQNRFQSTINNLQSM 232 +A S + +ID+AL VD +S LGAIQNRF S I NL + Sbjct: 396 DKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNT 455 Query: 233 NENSAAAMGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 284 N +A R++D D+A E + ++K Q LQQA TSVLAQANQ+P VL LL+ Sbjct: 456 VTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 68.3 bits (167), Expect = 2e-15 Identities = 61/321 (19%), Positives = 110/321 (34%), Gaps = 42/321 (13%) Query: 1 MKVLVTGATGFVGRHLVAALLARGYRVRALAR-------RLEPA-QAMPWFGQVDFVAAD 52 MK LVTGA GF+G H+ LL G++V + L+ A + F D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 53 LHDPQLDVNQLCD--GIDALVHLAW-----PGLPNYQGLFHLERNLMADYAFIKRAVAAG 105 L D + + L + + L N + NL ++ Sbjct: 61 LADREG-MTDLFASGHFERVFISPHRLAVRYSLENPHAYA--DSNLTGFLNILEGCRHNK 117 Query: 106 VGQVQVAGTCFEYGLR---NGALDEALDCQPANPYGLAKHSLRLFLESLARQQPFNLQWV 162 + + A + YGL + D+++D P + Y K + L + + + Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVD-HPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 163 RLFYLFGEGQNPGSLLAALDRAIDQGQPHFDMSGGEQLRDYLAIE---SASTYLADLLGQ 219 R F ++G P L +A+ +G+ + G+ RD+ I+ A L D++ Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 220 RDFSG---------------VVNCCSGQPISVRKLVEARIAERNATLALNLGHYPYPAHE 264 D V N + P+ + ++ E + P + Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQ--ALEDALGIEAKKNMLPLQPGD 294 Query: 265 PMAFWGDARKLQALLGARHET 285 + D + L ++G ET Sbjct: 295 VLETSADTKALYEVIGFTPET 315
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 104 bits (261), Expect = 1e-27 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 19/176 (10%) Query: 15 RVLLTGHTGFKGSWLALWLRELGAQVTGF-ALDPGTEPSLFE--LAQVG-SDITDVRGDL 70 + L+TG GF G ++ L E G QV G L+ + SL + L + + DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 71 RDLGALLEAVAQAQPEIVLHLAAQPLVREAYRDPLGTYSSNVMGTLNLLEAVRQVGGVRA 130 D + + A E V + VR + +P SN+ G LN+LE R ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN-KIQH 120 Query: 131 CVLVTTDKVYANQEWPWPYRENEALGGHD-------PYSSSKACCELLAQSYAASF 179 + ++ VY P+ D Y+++K EL+A +Y+ + Sbjct: 121 LLYASSSSVYGLNR-KMPFST------DDSVDHPVSLYAATKKANELMAHTYSHLY 169
>FLAGELLIN#Flagellin signature. Length = 507 Score = 68.1 bits (166), Expect = 3e-14 Identities = 82/523 (15%), Positives = 163/523 (31%), Gaps = 30/523 (5%) Query: 1 MRISTAQFYQTSAANYQRNYSNLIKTNEEASSFVRVNTAADDPVGAARLLQLGNQADMLA 60 I+T + N ++ S+L E SS +R+N+A DD G A + + L Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 QYKTNATNITNSLNQTETTLNSINTILTRVNELAIESGNAGYTDTERKAKAAELGQLEDQ 120 Q NA + + TE LN IN L RV EL++++ N +D++ K+ E+ Q ++ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 121 LLSLMNSRDENGQYLFAGSSTDTAPFVRNADGTYSYQGDQTQLELQVGDMLKMAGNSSGY 180 + + N NG + + + N T + + ++ D + G Sbjct: 122 IDRVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 181 SVFEQALNTSRTETSLSSPAVDDGRVKLSNGQVSGSVTYNDRFRSGQPYTVTMLSSTEFS 240 ++ + T + + RV +++G V T Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPT------------------- 222 Query: 241 ITDSLGNDVTAEATQGGKFDPDTVGGSMISFRGVDMRLNINLQDGDVPDAAVAGHTFTLQ 300 + + V A G D + + + + A G Sbjct: 223 ----VPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTF 278 Query: 301 SKPDTITATRSPGNPSSAQVSSISITDPAQYKAMFPNGGAVIKFTSATDFELYAQPLTAD 360 + S +I + +AT + Sbjct: 279 DYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVV 338 Query: 361 SRPVASGAMTGN-----VASAAGVDFTFTSTPAQQSGDQYVVNVDNHQTQNVLDTVAQLR 415 + T N A S + + T Sbjct: 339 NGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKT 398 Query: 416 TALSKPIDGDNAAYQQLRADLDSAIANIQSGQDALNTAVTDIGARGKALEIQQNTNESLS 475 + + ++AA + + +A+I S ++ + +GA + + Sbjct: 399 ASGVSTLINEDAAAAK--KSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTV 456 Query: 476 IANSTTQSSIRDSDPATVLVRLTQQQTLLQASQAAFARVSQLS 518 ++ +S I D+D AT + +++ Q L QA + A+ +Q+ Sbjct: 457 TNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVP 499
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.028 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 20 VGGTAKKATDTASKTGTDALGKDAFLQLLVTQMQHQNPLDPQENGEFVAQLA-QFSSLEG 78 +GG A+ D K G FL ++ M+ + Q++G V+ +S+E Sbjct: 128 LGGGAENIGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKASIEL 187 Query: 79 ITSLNESVSSITN 91 I L ++V+S+ N Sbjct: 188 INQLVDTVASLNN 200
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.9 bits (80), Expect = 8e-05 Identities = 8/38 (21%), Positives = 20/38 (52%) Query: 108 NVNVVEEMADMISASRAFQTNAELMNTAKNMMQKVLTL 145 VN+ EE ++ + + NA+++ TA + ++ + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 32.2 bits (73), Expect = 5e-04 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 15/77 (19%) Query: 4 SSVFNIAGSGMSAQNTRLNTVASNIANAETVSSSIDQTYRARHPVFATTFQNAQAGGSQS 63 SS+ N A SG++A LNT ++NI++ + R N+ G Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYT-------RQTTIMAQ-ANSTLGA--- 49 Query: 64 LFEDQGEAGQGVQVKGI 80 G G GV V G+ Sbjct: 50 ----GGWVGNGVYVSGV 62
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.5 bits (126), Expect = 9e-10 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 14/123 (11%) Query: 181 RVLTVDDSSVARKQVSRCLQTVGVEVVALNDGRQALDYLRKLVDEGKRPEEEFLMMISDI 240 +L DD + R +++ L G +V ++ ++ + ++++D+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA---------AGDGDLVVTDV 55 Query: 241 EMPEMDGYTLTAEIRS-DPRMQKLHICLHTSLSGVFNQAMVKKVGADDFLAK-FKPDDLA 298 MP+ + + L I+ P + L + + +A + GA D+L K F +L Sbjct: 56 VMPDENAFDLLPRIKKARPDLPVLVMSAQNTFM-TAIKAS--EKGAYDYLPKPFDLTELI 112 Query: 299 QRV 301 + Sbjct: 113 GII 115
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 37.9 bits (88), Expect = 4e-05 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 112 RILQIDDQKIRADLKEGRVVVVAGFQGV---DEHGSITTL-GRGGSDTTGVALAAALKAD 167 ++ + I+ ++ G +V+ +G GV E G I + D G LA + AD Sbjct: 172 GHVEAE--TIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNAD 229 Query: 168 ECQIYTDVDGVYTTDPRVVPQARRLEKITFEEMLEMA--------SLGSKVLQ-IRSVEF 218 I TDV+G + + L ++ EE+ + S+G KVL IR +E+ Sbjct: 230 IFMILTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW 287 Query: 219 AGK 221 G+ Sbjct: 288 GGE 290
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.009 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 703 KIISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNR 762 ISE S R ++A A L A ++++E ++ + +R +L L A E + Sbjct: 339 NKISEASRQSLRRDLDASR--EAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKK 396 Query: 763 QLEKQLEQLQAKAASAA---GDDLSSAAVEVKGAKVLAARLDGQDGKAL 808 Q+EK LE+ +K A+ + S + K L A+L+ + KAL Sbjct: 397 QVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAE-AKAL 444
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 27.7 bits (61), Expect = 0.006 Identities = 11/44 (25%), Positives = 16/44 (36%) Query: 54 AGFSGSLIVAEFDSLSAAQAWADADPYIAAGVYDQVIVKPFKQV 97 G GS+ E ++ A W +P A V V +V Sbjct: 279 IGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKV 322
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.8 bits (246), Expect = 3e-26 Identities = 38/116 (32%), Positives = 61/116 (52%) Query: 4 LLLIDDDQELCELLGSWLTQEGFAVRACHDGQSARRALAEHAPAAVVLDVMLPDGSGLEL 63 +L+ DDD + +L L++ G+ VR + + R +A VV DV++PD + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 64 LKQLRSDHAELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119 L +++ +LPVL++SA+ + I E GA DYL KP D EL + L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>NEISSPPORIN#Neisseria sp. porin signature. Length = 348 Score = 28.0 bits (62), Expect = 0.011 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Query: 1 MRKTLIALMFAAALPTVAMA 20 M+K+LIAL AALP AMA Sbjct: 1 MKKSLIALTL-AALPVAAMA 19
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 5e-04 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 24/115 (20%) Query: 327 PGLTLQGWPTLIERAVDNLLRNALRFNPQGQPIEVRAGREQGRIVVSVRDHGPGVSPEHL 386 P + +Q TL+E + ++ + PQG I ++ ++ G + + V + G Sbjct: 256 PPMLVQ---TLVENGI----KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL------ 302 Query: 387 AQLGEPFFRAPGQEAPGHGLGLA-IARKAAERHGGSLVLE-NHPQGGFVARLDLP 439 A G GL + + +G ++ + QG A + +P Sbjct: 303 ---------ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 28.1 bits (62), Expect = 0.021 Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 35 RCAVVTSRLSRHGETSALVLQVGGSWDALA 64 R A V + +G TS V V +++A+ Sbjct: 513 RAACVQAAADLYGSTSQEVNSVKQAFNAVG 542
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.048 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 10/103 (9%) Query: 139 GEIGK-FGQWALSFSLSSLPLLVSAMIYLVLVPILVFFFLKDR-----EQIGRWVSGYLP 192 G G + Q++++ + + +S ++ L+L P L LK E G + + Sbjct: 461 GSTGAIYRQFSITIVSA---MALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNT 517 Query: 193 RQRTLLNRVGTEMNRQIANYIRGKGIEILICGIATYIAFISLG 235 +N + + + + R I LI + F+ L Sbjct: 518 TFDHSVNHYTNSVGKILGSTGRYLLIYALIVA-GMVVLFLRLP 559
>PF01206#SirA family protein Length = 76 Score = 92.5 bits (230), Expect = 6e-29 Identities = 38/72 (52%), Positives = 51/72 (70%) Query: 8 DAELDASGLNCPLPLLKAKMELNRLASGAVLKVIATDAGSQRDFRTFAQLAGHTLLHEMA 67 D LDA+GLNCPLP+LKAK L + +G VL V+ATD GS +DF +F++ GH LL + Sbjct: 5 DQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHELLEQKE 64 Query: 68 EAGTYTYWLRKA 79 E GTY + L++A Sbjct: 65 EDGTYHFRLKRA 76
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.0 bits (64), Expect = 0.043 Identities = 13/40 (32%), Positives = 23/40 (57%) Query: 175 AGTQAAAIQEQRRFSRQNEQEADRVGIQNLEKAGYDPRNM 214 A QA Q+ +R R+ E+ +R ++NL A +P+N+ Sbjct: 154 AKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNL 193
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.4 bits (68), Expect = 0.027 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 26/223 (11%) Query: 449 ATAANEMSATAQDVAHNAAQAAQAARGADQASREGLQLIASTRQAIDTLAAGMDAAMVEA 508 A A +TAQ A QAA+A A+ ++ A T++ D + Sbjct: 50 AIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQRLKD----------IVN 99 Query: 509 RALEQRSEQIGSVLEVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQ 568 AL + + S E+ A A + A + + A+A E R A A++ A++ Sbjct: 100 EALRHNASRTPSATEL--AHANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQ-- 155 Query: 569 VSVEEIRQVIEGLQQGTQDVVGAMHDGQKQAQASASRMEQALPTLQRIGEAVAVISDMNL 628 R+ IE + T+ + +++ A+ S +A+ Q+ A S++ Sbjct: 156 -----RRKEIEREKAETERQLKLAEA-EEKRLAALSEEAKAVEIAQKK--LSAAQSEVVK 207 Query: 629 QIASAAEEQSAVAEEVNRNVAGIRDVTESLSGQADESARISQA 671 S ++ ++ A ++L+G+ +E A+ S Sbjct: 208 MDGEIKTLNSRLSSSIHARDA----EMKTLAGKRNELAQASAK 246
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 32.0 bits (72), Expect = 0.008 Identities = 9/54 (16%), Positives = 21/54 (38%) Query: 208 HEFHVLAESGEDDVIFSDSSDYAANIEKAEAIPRETARLAPTEELRLVDTPDAK 261 V + E + + DYA N E+++ + E + + + + D + Sbjct: 138 ASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPE 191
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 28.7 bits (63), Expect = 0.036 Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 100 GAVAVVAGAGANVVNVFALGNLPESITHDWISYGVAGLNPFMNVQSNGRAQQNLAGIS 157 AVAV AG+ A VN A+G L +++ ++YG A V RA + G++ Sbjct: 85 AAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVA 142
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 287 bits (736), Expect = 6e-98 Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%) Query: 209 ALVGHDGNALAIPV--------VEVPAGQTTDTVTLFLSGDGGWRDLDRDVAGEMAKLGY 260 A + L + + V + T + +FLSGDGGW LD+ V G + + G+ Sbjct: 20 AFADEFADNLGLTLLPVEPSTQVNAASSHTKPPLVIFLSGDGGWATLDKAVGGILQQQGW 79 Query: 261 PVVGIDTLRYYWQHKTPEQSATDLSELMQHYRQKWGTKRFVLTGYSFGADVLPAIYNRLP 320 PVVG +L+YYW+ K P+ D ++ Y+ ++GT++ +L GYSFGA+V+P + N +P Sbjct: 80 PVVGWSSLKYYWKQKDPKDVTQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMP 139 Query: 321 AEDQQRIDAVMLLAFARSGSFEIEVEGWLGKDGQEAP--TGPEMAKLPAPKVVCIYGVEE 378 A ++ + +LL+ ++S FEI V + D Q A T PE+ K ++C+YG E+ Sbjct: 140 ARYRKNVLGAVLLSPSQSSDFEIHVSEMVTSDNQSARYLTLPEVNKQTTVPMLCLYGKED 199 Query: 379 -ADESGCTD-KTAVGERIKLPGGHHFDENYPALAKRLID 415 A C + K ++L GGH FD++Y + K + Sbjct: 200 DAPLHLCPEVKQPNVTVMELSGGHSFDDDYDKVVKLIKG 238
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 5e-04 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 80 VAPQYRGRGVGKRLLRYAIS-----ELNAQCLDVNEQNPQALGFYLHEGFEVTG 128 VA YR +GVG LL AI L+ + N A FY F + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 28.5 bits (63), Expect = 0.008 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Query: 1 MKKLVMLCCASLLAACSSHTPSPQASLDGEVFYLQRIALPPSATLSVELQDVSLMD 56 +K L+ML A+LLAACS+ S S+D T S++LQ VS D Sbjct: 12 VKLLLMLGTAALLAACSNEADSLTTSID------------APVTASIDLQSVSYTD 55
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 481 bits (1239), Expect = e-155 Identities = 239/1049 (22%), Positives = 435/1049 (41%), Gaps = 47/1049 (4%) Query: 5 LSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGATAEEVSRQ 64 ++ + +R L I+L GA++ +L ++ P A+ + +PGA A+ V Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTERIEKKLMETGEYEKIVSFS-RPGESQVTFMARDSLHSKDIPELWYQIRKKVADIRHT 123 VT+ IE+ + + S S G +T + D Q++ K+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSG---TDPDIAQVQVQNKLQLATPL 117 Query: 124 LPPEIQGP-FFNDEFGTTFGNIYALTGTGFDY--AVLKDYADR-IQIQLQRVKDVGKVEL 179 LP E+Q ++ +++ + + DY ++ L R+ VG V+L Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 180 IGLQDEKIWIELSNLKLATLGVPLDAVQQALREQNAVSTAGFFE----TPSERLQ--LRV 233 G + I L L + V L+ QN AG P ++L + Sbjct: 178 FG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 234 SGQFDSVEQIRQFPIRVGD--RTFRIGDVAEVYRGFNDPPAPRMRFMGDDAIGLAVSMKD 291 +F + E+ + +RV R+ DVA V G + R G A GL + + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNV-IARINGKPAAGLGIKLAT 295 Query: 292 GGDILVLGKALEGEFERLARNLPAGMQLRKVSDQPAAVKAGVGEFVRVLVEALVIVLLVS 351 G + L KA++ + L P GM++ D V+ + E V+ L EA+++V LV Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 352 FFSLG-LRTGLVVALAIPLVLAMTFAAMHYFGIGLHKISLGALVLALGLLVDDAIIAVEM 410 + L +R L+ +A+P+VL TFA + FG ++ +++ +VLA+GLLVDDAI+ VE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 411 MA-IKMEQGFDRFKAASYAWTSTAFPMLTGTLITAAGFLPIATAASSTGEYTRSIFQVVT 469 + + ME +A + + ++ ++ +A F+P+A STG R + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 470 IALLTSWVVAVVFVPYLGERLLPDLAKLHAARHDGNGHAPDPYATPFYQRVRRVVEWCVR 529 A+ S +VA++ P L LL ++ H G + V + Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 530 RRKTVILLTIAAFVGSIALFRFVPQQFFPASGRPELMVDLKLAEGASLGNTTERVKQLEA 589 +L+ G + LF +P F P + + ++L GA+ T + + Q+ Sbjct: 536 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 595 Query: 590 LLKQQDGIDNYVAYVGTGSPRFYLPLDQQLPAASFAQFVVLATSMEE--RERLRSWLINT 647 + + + + G Q A A FV L E E +I+ Sbjct: 596 YYLKNEKANVESVFTVNG-----FSFSGQAQNAGMA-FVSLKPWEERNGDENSAEAVIHR 649 Query: 648 VDQQFPDLRARVTRLENGPPVGYPVQFRVTGEHIEKVRALAREVADKVREN--------- 698 + +R N P + + L + + R Sbjct: 650 AKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHP 709 Query: 699 SHVVNVHLDWEEPSKAVFLAIDQDRARALGVSTAHLSSFLRSSLTGTTVSQYREDNELIE 758 + +V+V + E + L +DQ++A+ALGVS + ++ + ++L GT V+ + + + + Sbjct: 710 ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKK 769 Query: 759 ILLRGTQKERGELGNLGSLALPTDNGQSVALSQVATLDYGFEEGIIWHRNRLPTVTVRAD 818 + ++ K R ++ L + + NG+ V S T + + + N LP++ ++ + Sbjct: 770 LYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGE 829 Query: 819 IYDKEQPATLVRQIAPTLQEIKGKLPDGYLLEVGGTVEDSERGQKSVNAGMPLFIVVVLS 878 P T ++ + KLP G + G A + + VVV Sbjct: 830 A----APGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFL 885 Query: 879 LLMIQLRSFSRTVMVFLTAPLGLIGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVILV 938 L S+S V V L PLG++GV L +F Q M+G + G+ +N++++V Sbjct: 886 CLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIV 945 Query: 939 DQIEQ-DIASGLDRWQAIIEATVRRFRPIVLTALAAVLAMIPLSRSVFYG-----PMAVA 992 + + G +A + A R RPI++T+LA +L ++PL+ S G + + Sbjct: 946 EFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIG 1005 Query: 993 IMGGLIVATVLTLLFLPALYAAWFRVKKG 1021 +MGG++ AT+L + F+P + R KG Sbjct: 1006 VMGGMVSATLLAIFFVPVFFVVIRRCFKG 1034
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 3e-09 Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 24/201 (11%) Query: 93 DVRLQLEANRAQLAAAEANLALVRAERDRYRKLLDRQMVSHSLYDNAENLYRAGLARLKQ 152 + +L ++QL E+ + + E +L +++ + GL L+ Sbjct: 263 EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD----KLRQTTDNIGLLTLEL 318 Query: 153 AKAEFDVAGNQAGYAVLRAPQAGVIAKRQV-EVGQVVAAGQTVFTLAADGER-EVVIGLP 210 AK E +V+RAP + + + +V G VV +T+ + + + EV + Sbjct: 319 AKNEERQQ-----ASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 211 EQQFARFAVGQQVSVELWS---RRNERFQGRIRELSPAADPRSRT---FAARIAFNSAKV 264 + VGQ +++ + R G+++ ++ A R F I+ + Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCL 433 Query: 265 PADL-------GQSARVFIAH 278 G + I Sbjct: 434 STGNKNIPLSSGMAVTAEIKT 454 Score = 46.0 bits (109), Expect = 1e-07 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 11/125 (8%) Query: 67 GKVSKRLVEEGQRVQADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYRK-- 124 V + +V+EG+ V+ L +L ++ L A + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 125 --------LLDRQMVSHSLYDNAENLYRAGLARLKQAKAEFDVAGNQAGYAVLRAPQAGV 176 Q VS +L + + + K + ++ ++ A A + Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKR-AERLTVLARI 223 Query: 177 IAKRQ 181 Sbjct: 224 NRYEN 228
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 67.0 bits (163), Expect = 7e-16 Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 11/174 (6%) Query: 8 GPGRPKDLAKREAILEAAKTLFLSLGYANTSMDAVAAAAGVSKLTVYSHFNDKQTLFGSA 67 + + R+ IL+ A LF G ++TS+ +A AAGV++ +Y HF DK LF S Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF-SE 61 Query: 68 VMATCQNQLPDLMFEYPE--GAAVEQVLLNIARGFQALISSDEAVKLSRLIMAQGSQDPS 125 + ++ + +L EY VL I ++E +L I+ + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFH--KCEF 119 Query: 126 FGEFFYEAG-----PKRVLAGMEGLLRGVAERGLLRID-NPLHAAEHFFCLVKG 173 GE +E L+ E +L D AA + G Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG 173
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.8 bits (121), Expect = 5e-10 Identities = 22/90 (24%), Positives = 39/90 (43%) Query: 23 KTARQGSEQRRQLILDAAMRIVVRDGVRGVRHRAVAAEAGVPLSATTYYFKDIEDLLTDT 82 + +Q +++ RQ ILD A+R+ + GV +A AGV A ++FKD DL ++ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 83 FAQYVERSAAYMAKLWANTEVVLRQLLAQG 112 + + A +L + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREI 92
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 60.6 bits (147), Expect = 2e-12 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%) Query: 19 VLLVDDQAMIGEAVRRGLAHEENIDFHFCADPHQAVAQAMRIKPTVILQDLIMPGLDGLT 78 +L+ DD A I + + L+ D ++ +++ D++MP + Sbjct: 6 ILVADDDAAIRTVLNQALS-RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 79 LVREYRNNPATRDIPIIVLSTKEDPLVKSAAFAAGANDYLVKLPDTIELVARIR 132 L+ + A D+P++V+S + + A GA DYL K D EL+ I Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 48.7 bits (116), Expect = 2e-08 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Query: 2 KIAIVNDMPMAVEALRRALALEPAHEVIWVASNGAEAVRQCAQATPDLILMDLIMPVMDG 61 I + +D L +AL+ ++V + SN A R A DL++ D++MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 62 VEATRRIMAETPCAIVIVTVDRKQNVHRVFEAMGHGALDVVDTP 105 + RI P V+V + +A GA D + P Sbjct: 63 FDLLPRIKKARPDLPVLVMSA-QNTFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 1e-15 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 630 SSKRILVVDDSLTVRELQRKLLSNRGFEVAVAVDGMDGWNALRSEDFDLLITDIDMPRMD 689 + ILV DD +R + + LS G++V + + W + + D DL++TD+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 690 GIELVTLVRRDQRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAV 746 +L+ +++ LPV+V+S ++ + + GA YL K F L+ + Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK-PFDLTELIGII 115
>PF05860#haemagglutination activity domain. Length = 117 Score = 77.2 bits (190), Expect = 9e-19 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 21/117 (17%) Query: 52 GVPVIDIVAPNASGLSHNQFLDYNVARPGVVLNNALQAGQSQLAGALAANPQFQGHAAST 111 +I+ S L H+ F +++V G N Sbjct: 20 NTRIIERGTQAGSNLFHS-FQEFSVPTSGTAFFN-------------------NPTNIQN 59 Query: 112 ILNEVISRNASLIEGPQEIFGRPADYILANPNGITLNGGSFINTTRAGFLVGTPELQ 168 I++ V + S I+G A+ L NPNGI + ++ + L+ Sbjct: 60 IISRVTGGSVSNIDGLIRANAT-ANLFLINPNGIIFGQNARLDIGGSFVGSTANRLK 115
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.2 bits (60), Expect = 0.026 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 4/29 (13%) Query: 3 RRQAGLTLIELMVAMALTALLGVMLAALV 31 +Q G TL+E+MV + ++GV LA+LV Sbjct: 5 DKQRGFTLLEIMVVI---VIIGV-LASLV 29
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 31.0 bits (70), Expect = 6e-04 Identities = 13/24 (54%), Positives = 17/24 (70%) Query: 3 RKQQGFTLLEVTVALAIAAVLAVI 26 KQ+GFTLLE+ V + I VLA + Sbjct: 5 DKQRGFTLLEIMVVIVIIGVLASL 28
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 38.8 bits (90), Expect = 2e-06 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 4 QRGFSLLELLVVLAIAGLMTGLAV-AWLDSGKASVDQALQRLAAHVHTQAALARHAGQLR 62 QRGF+LLE++++L + G+ G+ + A+ S S Q L R A + GQ Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFF 62 Query: 63 GLRWTGQRPEFVRREREGWVAEPVSFGDWPKGLR 96 G+ R +F+ E A+P D G R Sbjct: 63 GVSVHPDRWQFLVLEA-RDGADPAPADDGWSGYR 95
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 213 bits (545), Expect = 6e-75 Identities = 69/141 (48%), Positives = 94/141 (66%), Gaps = 3/141 (2%) Query: 4 RRKRQHGFTLMEIMVVIFIIGLLIAVVAPSVLGNQDKAMRQKVMADLSTLEQALDMYRLD 63 +Q GFTL+EIMVVI IIG+L ++V P+++GN++KA +QK ++D+ LE ALDMY+LD Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 64 NLRFPSNEQGLAALVKKPAQEPLPRAWRSDGYVRRLPEDPWGTPYQYRMPGEHGRVDVYS 123 N +P+ QGL +LV+ P PL + +GY++RLP DPWG Y PGEHG D+ S Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLLS 122 Query: 124 LGADGVPGGEGQDADLGNWAL 144 G DG G E D+ NW L Sbjct: 123 AGPDGEMGTED---DITNWGL 140
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 456 bits (1175), Expect = e-162 Identities = 173/404 (42%), Positives = 250/404 (61%), Gaps = 8/404 (1%) Query: 1 MPTFRYQAVDLAGKTHKASLQADTERHARQLLREQGLFP--------RQLQRFESGARQP 52 M + YQA+D GK + + +AD+ R ARQLLRE+GL P Q + +G Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 53 RRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHGVLVALRGSLAEGLGL 112 R+ RLS + L LTRQLATL A +PL +AL + +Q +P L ++ A+R + EG L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 113 ARSLARQGAPFTGLYCALVEAGERSGRLAQVLTRLADHLEQVQRQQHKARTALIYPCVLM 172 A ++ F LYCA+V AGE SG L VL RLAD+ EQ Q+ + + + A+IYPCVL Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 173 GVSLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVHAGPWLLGLAILTSLL 232 V++AVV L++ VVPK+ EQF H Q+LPL T +L+G+S + GPW+L + + Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 233 ASWLLRKPHWCLRRDDLLLRLPRVGGLLQVLESARLARSLAILTSSGVALLEALQVATET 292 +LR+ + LL LP +G + + L +AR AR+L+IL +S V LL+A++++ + Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 293 VGNRRIRLAMEQVRQQVQGGTSLHRALDGCQQFPPLLVNMVGSGEASGTLADMLERVADD 352 + N R + V+ G SLH+AL+ FPP++ +M+ SGE SG L MLER AD+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 353 QERGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLNQ 396 Q+R F+ Q+ A+ LFEPL+++ M AVVLFIVLA+L PI+QLN Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNT 404
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 525 bits (1353), Expect = 0.0 Identities = 225/654 (34%), Positives = 352/654 (53%), Gaps = 50/654 (7%) Query: 6 CVAAALTLALAAAWAEEPETFDDNGTPLYEVNFVDTELGEFIDSVSRITGTTFIVDPRVK 65 + A L A AEE + +F T++ EFI++VS+ T I+DP V+ Sbjct: 14 LLIFAALLF-RPAAAEE-----------FSASFKGTDIQEFINTVSKNLNKTVIIDPSVR 61 Query: 66 GKVTVRTVDRHDADAIYDIFLAQLRAQGYAAVDLPNGSVKIVPDQAARLEPVPVEAAGKH 125 G +TVR+ D + + Y FL+ L G+A +++ NG +K+V + A+ VPV + Sbjct: 62 GTITVRSYDMLNEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAP 121 Query: 126 GEGSDGVATRVFNVRNAASEQMLGILKPLIDPR-VGVITPYPAANLLVVTDWRSNLERID 184 G G D V TRV + N A+ + +L+ L D VG + Y +N+L++T + ++R+ Sbjct: 122 GIG-DEVVTRVVPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLL 180 Query: 185 SLLRQLDQVSDEPLKVMPLRHASAADTAQLLTRLLAREQ-----GADSTQVVADPRSNAL 239 +++ ++D D + +PL ASAAD +L+T L G+ VVAD R+NA+ Sbjct: 181 TIVERVDNAGDRSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAV 240 Query: 240 LVRG---STDRVRALLGQLDQPSENRHSSNTQVIYLRHANAGEVVKVLRGLSQEGGVPSE 296 LV G S R+ A++ QLD+ NT+VIYL++A A ++V+VL G+S + Sbjct: 241 LVSGEPNSRQRIIAMIKQLDRQQAT--QGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQ 298 Query: 297 GAGEGEAKDKPVMAAASDSGIRLEYEEGTNAVVMVGPDSELAAYRSIVEQLDIRRAQVVV 356 A A DK ++ A TNA+++ + ++ QLDIRR QV+V Sbjct: 299 AAKPVAALDKNIIIKAHGQ---------TNALIVTAAPDVMNDLERVIAQLDIRRPQVLV 349 Query: 357 EAIIAEVSDSRAQELGVQWLFADEKFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLS 416 EAIIAEV D+ LG+QW AG+ F ++G+ I+ A + + G + S Sbjct: 350 EAIIAEVQDADGLNLGIQWANK----NAGMTQFTNSGLPISTAIAGANQYNKD--GTVSS 403 Query: 417 ATTGVTAGIGHFGGGF---NFAMLINALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPF 473 + + GF N+AML+ AL + ++L+TP+++TLDN EA+ VGQEVP Sbjct: 404 SLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPV 463 Query: 474 VTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADSSAASD---- 529 +TGS T + N + T+ERK VG+KL++KPQIN +SV L+I QEVSS+AD+++++ Sbjct: 464 LTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG 523 Query: 530 VITNKREIKTKVMVEDNGLVILGGLISDELSTSDQRVPFLGDIPGLGRLFRSEASKNTKQ 589 N R + V+V V++GGL+ +S + +VP LGDIP +G LFRS + K +K+ Sbjct: 524 ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKR 583 Query: 590 NLMVFIRPRILRDGPSLAGLSEDKYRTLQQTTPLKLPGLAQDG----QLLRVFP 639 NLM+FIRP ++RD S +Y + D LL ++P Sbjct: 584 NLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQDLLEIYP 637
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 256 bits (656), Expect = 2e-83 Identities = 91/416 (21%), Positives = 169/416 (40%), Gaps = 55/416 (13%) Query: 31 LMLAAFLAWAAWFEVTEVSTGTGKVIPSSREQVIQSFEGGIVAEMNVAEGDLVERGQVLA 90 L + +V V+T GK+ S R + I+ E IV E+ V EG+ V +G VL Sbjct: 66 GFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLL 125 Query: 91 QLDPTKTASSVGESEAKYRAATASVARLRAEVTG---------KPLAFPDSLRDSPDLID 141 +L + ++++ A R + K P S + + Sbjct: 126 KLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL 185 Query: 142 AETALYQTRRR---------------------GLEQTLAGIEDSLRLVRSELQITENLAK 180 T+L + + + + E+ R+ +S L +L Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 181 MGASSRVEVI---------------------RLNRQRSELELKANEARSDYLVRAREELA 219 A ++ V+ ++ + + + + ++L Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 220 KASAEADSLSEVIRGRSDSLSRLTLRSPVRGIVKDIEVNTLGGVVQPGGQVMKIVPMDER 279 + + L+ + + +R+PV V+ ++V+T GGVV +M IVP D+ Sbjct: 306 QTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDT 365 Query: 280 LLIETRIAPRDIAFIHPDQAAKVKISAYDYSVYGGLEGKVVGISPDTLQDEVKPEIYYYR 339 L + + +DI FI+ Q A +K+ A+ Y+ YG L GKV I+ D ++D+ + + + Sbjct: 366 LEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQ-RLGLVFN- 423 Query: 340 VFIRTEQDSLQNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKPL-NRAKEALRER 394 V I E++ L + K + GM T +I+TG ++++ YL+ PL E+LRER Sbjct: 424 VIISIEENCL-STGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.5 bits (144), Expect = 3e-12 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%) Query: 169 AANILVVDDSQVALQQSVHTLRNLGIDCHTARSAKDAINVLLELQGTAQEINIIVSDIEM 228 A ILV DD L G D +A + A + +++V+D+ M Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI-----AAGDGDLVVTDVVM 57 Query: 229 SEMDGYAFTRTLRETPDFQHLYVLLHTSLDSAMSAEKARLAGANAILTK 277 + + + +++ L VL+ ++ ++ M+A KA GA L K Sbjct: 58 PDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 57.5 bits (139), Expect = 3e-11 Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 48/207 (23%) Query: 1 MRRPTRPLLLAATALLALAALGIWYGQRQEAPVARAQSAIPVRVVSVAQQDVPRYASAIG 60 +R L A ++ + V +V+ A + Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILS-----------VLGQVEIVATANGKL-------- 90 Query: 61 SVLSLHSVEIKPQVEGVLTRVLVKEGQWVKQGDLLATLDDRSIRASLDQARAQLGQSQAQ 120 S S EIKP ++ ++VKEG+ V++GD+L L A + ++ L Q++ + Sbjct: 91 -THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 121 ---------------------------IQVAGVDLKRYR-LLSSDDGVSKQTLDQQQALV 152 V+ ++ R L+ + Q++ + Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Query: 153 NQLQATVKGNQAAIANAEVQLSYTQIR 179 ++ +A A I E + R Sbjct: 210 DKKRAERLTVLARINRYENLSRVEKSR 236 Score = 35.6 bits (82), Expect = 3e-04 Identities = 9/76 (11%), Positives = 29/76 (38%) Query: 104 RASLDQARAQLGQSQAQIQVAGVDLKRYRLLSSDDGVSKQTLDQQQALVNQLQATVKGNQ 163 RA A++ + + +V L + L ++K + +Q+ + ++ + Sbjct: 213 RAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYK 272 Query: 164 AAIANAEVQLSYTQIR 179 + + E ++ + Sbjct: 273 SQLEQIESEILSAKEE 288 Score = 34.4 bits (79), Expect = 7e-04 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 30/159 (18%) Query: 104 RASLDQARAQLGQSQAQIQVAGVDLKRYRLLSSDDGVSKQTLDQQQALVNQLQATVKGNQ 163 L ++QL Q +++I A + + LD+ + Q + Sbjct: 265 VNELRVYKSQLEQIESEILSA-----KEEYQLVTQLFKNEILDK----LRQTTDNIGLLT 315 Query: 164 AAIANAEVQLSYTQIRSPVTGRV-GIRNIDPGNLVRASDT-------------QGLFSVT 209 +A E + + IR+PV+ +V ++ G +V ++T L Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNK 375 Query: 210 QID------PIAVEFS-LPQQMLPTLQGLLKAPTPALVQ 241 I ++ P L G +K ++ Sbjct: 376 DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIE 414
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 775 bits (2004), Expect = 0.0 Identities = 289/1034 (27%), Positives = 499/1034 (48%), Gaps = 36/1034 (3%) Query: 12 IDHPVATLLLTFALVLLGAIAFPRLPVAPLPEADFPTIQVTAQLPGASPETMASSVATPM 71 I P+ +L L++ GA+A +LPVA P P + V+A PGA +T+ +V + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVI 65 Query: 72 EVQFSAIPGMTQMTSSSA-LGSTTLILQFTLDKNIDTAAQEVQAAINTATARLPQDLPNP 130 E + I + M+S+S GS T+ L F + D A +VQ + AT LPQ++ Sbjct: 66 EQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQ 125 Query: 131 PTWRKVNPADSPVLVLTVSS--AQMPGNDLSDYAETLLARQLSQIEGVGLINITGQLRPA 188 + S ++V S +D+SDY + + LS++ GVG + + G A Sbjct: 126 GI-SVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY-A 183 Query: 189 IRVQAQPEKLAAMGLTLADLRLAIQQTSLNLAKGALYGEHSVS------TIAANDQLFHP 242 +R+ + L LT D+ ++ + +A G L G ++ +I A + +P Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNP 243 Query: 243 EDYARLIV-SYRDGAPVHLQDVAKVINGAENAYVKAWSGNQPGLNLVVFRQPGANIVDTV 301 E++ ++ + DG+ V L+DVA+V G EN V A +P L + GAN +DT Sbjct: 244 EEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTA 303 Query: 302 DRVLGALPKLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQWS 361 + L +LQ P ++V D T ++ S+HEV TL A+ LV VM LFL+ Sbjct: 304 KAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMR 363 Query: 362 ATLVVSSVLGVSLIATCALMYVFGFSLNNLTLVAIVIAVGFVVDDAIVVVENIHRHL-EA 420 ATL+ + + V L+ T A++ FG+S+N LT+ +V+A+G +VDDAIVVVEN+ R + E Sbjct: 364 ATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMED 423 Query: 421 GEDSRTAALKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480 + A K +I +V I+ L A FIP+ F GG G ++++F++T + + +SV+ Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 483 Query: 481 VSLTLAPTLCALFMRRPPTEHHGGFGERLLKWYEKGLDRA-----------LAHQRLTLG 529 V+L L P LCA ++ EHH G W+ D + L L Sbjct: 484 VALILTPALCATLLKPVSAEHHENKG-GFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 530 VFGLTLALAVIGYVAIPKGFFPLQDTGFILGTTEAAADVSYPSMIDKHLALAKIIEADPA 589 ++ L +A V+ ++ +P F P +D G L + A + + + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 590 --VRAFSHSVGVTGSNQTIANGRFWIALKPRGERDV---SASELIDRLRPQLAQVPGVVL 644 V + G + S Q G +++LKP ER+ SA +I R + +L ++ + Sbjct: 603 ANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFV 662 Query: 645 YMRAGQDINLSSGPSRTQYQYVLKSNDGV-ALNLWTQRLTERLRENPA-LRDLSNDLQLG 702 I + ++ + ++ G AL +L ++PA L + + Sbjct: 663 IPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLED 722 Query: 703 ASVTRIDIDRQAAARFGLTTTDVDQALYDVFGQRQISEFQTETNQYKVILELDAQQRGKA 762 + ++++D++ A G++ +D++Q + G +++F K+ ++ DA+ R Sbjct: 723 TAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLP 782 Query: 763 ESLNFFYLRSPLTNEMVPLSALAHVAAPSTGPLSISHDGLFPAANLSFNLAPGVALGDAV 822 E ++ Y+RS EMVP SA G + P+ + APG + GDA+ Sbjct: 783 EDVDKLYVRSA-NGEMVPFSAFTTSH-WVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 823 AILERTQRELGMPDSISGNFQGAAQAFQSSLSSQPWLILAALVAVYIILGVLYESLVHPL 882 A++E +L P I ++ G + + S + P L+ + V V++ L LYES P+ Sbjct: 841 ALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 883 TIISTLPSAGLGALLLLWAMGQDFSIMGLIGVVLLIGIVKKNGILLIDFALEAQRRHGLT 942 +++ +P +G LL Q + ++G++ IG+ KN IL+++FA + + G Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 943 PEQAIHQACLTRFRPIIMTTMAALLGAVPLMFGFGAGAELRQPLGIAVVGGLLVSQALTL 1002 +A A R RPI+MT++A +LG +PL GAG+ + +GI V+GG++ + L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1003 FTTPVIYLALERLF 1016 F PV ++ + R F Sbjct: 1019 FFVPVFFVVIRRCF 1032 Score = 97.2 bits (242), Expect = 2e-22 Identities = 81/518 (15%), Positives = 167/518 (32%), Gaps = 47/518 (9%) Query: 9 AWCIDHPVATLLLTFALVLLGAIAFPRLPVAPLPEADFPTIQVTAQLPGASPETMASSVA 68 + LL+ +V + F RLP + LPE D QLP + + V Sbjct: 531 GKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVL 590 Query: 69 TPMEV-----------QFSAIPGMTQMTSSSALGSTTLILQFTLDKNIDTAAQEVQAAIN 117 + + G + + G + L+ + A+ Sbjct: 591 DQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLK---PWEERNGDENSAEAV- 646 Query: 118 TATARLPQDLPNPPTWRKVNPADSPVLVLTVSS---------AQMPGNDLSDYAETLLAR 168 R +L + ++ L ++ A + + L+ LL Sbjct: 647 --IHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGM 704 Query: 169 QLSQIEGVGLINITGQ-LRPAIRVQAQPEKLAAMGLTLADLRLAIQQTSLNLAKGALYG- 226 + + G +++ EK A+G++L+D I QT ++ A G Y Sbjct: 705 AAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSD----INQT-ISTALGGTYVN 759 Query: 227 -------EHSVSTIAANDQLFHPEDYARLIVSYRDGAPVHLQDVAKVINGAENAYVKAWS 279 + A PED +L V +G V + ++ ++ Sbjct: 760 DFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYN 819 Query: 280 GNQPGLNLVVFRQPGANIVDTVDRVLGALPKLQEMLPASVEVSVLQDRTQTIRASLHEVE 339 G P + + PG + D + + L LPA + + R S ++ Sbjct: 820 G-LPSMEIQGEAAPGTSSGD----AMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAP 873 Query: 340 LTLMIAVALVIGVMALFLRQWSATLVVSSVLGVSLIATCALMYVFGFSLNNLTLVAIVIA 399 + I+ +V +A WS + V V+ + ++ +F + +V ++ Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 400 VGFVVDDAIVVVENI-HRHLEAGEDSRTAALKGAGEIGFTVVSISFSLVAAFIPLLFMGG 458 +G +AI++VE + G+ A L ++ S + + +PL G Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 459 VVGRLFKEFALTATATILISVVVSLTLAPTLCALFMRR 496 + ++ + ++++ P + R Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.4 bits (201), Expect = 5e-20 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 2 RVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGYG 61 +L+ +D+ L++ LS G+ V + + GD ++V DV++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRALRAR-KQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARL-QALTRRSG 119 +L ++ PV++++A+ I +GA DYL KPF EL+ + +AL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 120 SHEPLQVQVGD 130 L+ D Sbjct: 125 RPSKLEDDSQD 135
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.009 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 31/155 (20%) Query: 315 QVSLAEEVATTLDYLDYILEDAQVS--VTVSGDAQAPIEKAQLRRALIN-LLNNAVQHTA 371 QVSLA+E+ YL L Q + I Q+ L+ L+ N ++H Sbjct: 215 QVSLADELTVVDSYLQ--LASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGI 272 Query: 372 PHQ----VIRVHIDAGPEQVSIAVSNPGPAIDDDHLPLLFERFYRVDAARSNSGGGNHGL 427 I + V++ V N G + + G Sbjct: 273 AQLPQGGKILLKGTKDNGTVTLEVENTGSLALK-------------------NTKESTGT 313 Query: 428 GLAIVKA-IALMHGGE--VFVRSEAGANTFGIRLP 459 GL V+ + +++G E + + + G + +P Sbjct: 314 GLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 27.3 bits (60), Expect = 0.024 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 4 AANKAVSIDYTLTNDAGETIDSS-AGGAPLVYLHGHANIIPGLEKALEGKQAGDELNVSI 62 + V+++YT T G DS+ G P + + +IPG +AL+ AG V + Sbjct: 142 GKSDTVTVEYTGTLIDGTVFDSTEKAGKPATF--QVSQVIPGWTEALQLMPAGSTWEVFV 199 Query: 63 EPEEAYG 69 + AYG Sbjct: 200 PADLAYG 206
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 103 bits (258), Expect = 3e-28 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 16/171 (9%) Query: 67 KGALIGAAAVGAAAAGYGY-YADKQEAELRAQMANTGVEVQRQGDQIKLIMPGNITFATD 125 + G + G Y + + A + A EVQ + + ++ F + Sbjct: 171 AHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTK----HFTLKSDVLFNFN 226 Query: 126 SANIAPSFYSPLNNLATSFKQFN--QNTIEVVGFTDSTGSRQHNMDLSQRRAQAVSAYLT 183 A + P + L+ L + + ++ V+G+TD GS +N LS+RRAQ+V YL Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 184 SQGVDASRVSVRGMGPDQPIASNADANGR---------AQNRRVEVNLKPI 225 S+G+ A ++S RGMG P+ N N + A +RRVE+ +K I Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 5e-04 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 26/105 (24%) Query: 133 VITNATRYA------GHALLISIAEENEQLVISVNDDGPGYPARMLERQQDYVQGIDAQS 186 ++ N ++ G +L+ ++N + + V + G + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL--------------ALKNTK 308 Query: 187 GSTGLGLYFA-ARIAALHERDGVRGRIEIANGGALGGGLFRLYLP 230 STG GL R+ L+ G +I+++ G + +P Sbjct: 309 ESTGTGLQNVRERLQMLY---GTEAQIKLSE--KQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.8 bits (132), Expect = 5e-10 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 7/138 (5%) Query: 10 LIVDDFTDFRTSTRSMLRELGVRDVDTADSGEQALRMCGQKRYDYILQDFHLGDGKKNGQ 69 L+ DD RT L G DV + R D ++ D + D N Sbjct: 7 LVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDE--NAF 63 Query: 70 QVLEDMILDKLISHECVFIMVTAESSQAIVLSALEHEPDAYLTKPFNRVGLAQRLDK-LT 128 +L + K + ++++A+++ + A E YL KPF+ L + + L Sbjct: 64 DLLPRI---KKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 129 QRKALLKPILQALDRGRP 146 + K + G P Sbjct: 121 EPKRRPSKLEDDSQDGMP 138
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 331 bits (850), Expect = e-116 Identities = 156/283 (55%), Positives = 194/283 (68%), Gaps = 2/283 (0%) Query: 3 LWTLLAEQPAYFFTLATLLGLLVGSFINVVAYRLPIMLERQWQREAQEALGLP--TDEHE 60 L L P +F+L L L++GSF+NVV +RLPIMLER+WQ E + + Sbjct: 4 LLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEP 63 Query: 61 RFDLCLPASRCPHCGHAIRAWENIPVLSYLALRGRCSACKQPIGSRYPLVELACALLSLT 120 ++L +P S CPHC H I A ENIP+LS+L LRGRC C+ PI +RYPLVEL ALLS+ Sbjct: 64 PYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVA 123 Query: 121 VAWHSGAAMEALALLAFTWSLLALSLVDHDKQILPDVLVLPTLWLGLIVNVFDTVVPLSD 180 VA LA L TW L+AL+ +D DK +LPD L LP LW GL+ N+ V L D Sbjct: 124 VAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGD 183 Query: 181 AIWGAVAGYLSLWTVYWLFKLITGKEGMGYGDFKLLALIGAWGGWQVVPLTLMLSSLVGA 240 A+ GA+AGYL LW++YW FKL+TGKEGMGYGDFKLLA +GAW GWQ +P+ L+LSSLVGA Sbjct: 184 AVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGA 243 Query: 241 VVGLCMLRLRSHSMGTAIPFGPYLAIAGWIAVLWGDEIYASYL 283 +G+ ++ LR+H IPFGPYLAIAGWIA+LWGD I YL Sbjct: 244 FMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYL 286
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 44.5 bits (105), Expect = 7e-09 Identities = 14/70 (20%), Positives = 35/70 (50%) Query: 2 QQGLSLIELLIVVAVTGILAAIAYPSYSDQLRRAARSEVVGLLHDAALRLEHHRVRTGQY 61 Q+G +L+E+++V+ + G+LA++ P+ +A + + V + L+ +++ Y Sbjct: 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHHY 66 Query: 62 AEGEPVLPAG 71 L + Sbjct: 67 PTTNQGLESL 76
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 27.9 bits (62), Expect = 0.012 Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 1 MKRQRGMVLLLALVLSLLLGLLAA 24 +QRG LL +V+ +++G+LA+ Sbjct: 4 TDKQRGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 29.5 bits (66), Expect = 0.006 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%) Query: 5 QGGFGLVEAMLALAIGLMLLTAASQLFISAHQSSRLQSAALRMQADARLALLRMAQDIRM 64 Q GF L+E ML L + + F ++ S Q+ A R +A R R Q + Sbjct: 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLA-RFEAQLRFVQQRGLQTGQF 61 Query: 65 AGMFGCLRLEPDDFR 79 G + + PD ++ Sbjct: 62 FG----VSVHPDRWQ 72
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 32.6 bits (74), Expect = 3e-04 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 1 MKQQGVTLIQMMFGLAMAALLTQLGMPAYAKLSDDLHRAAAARDLAQALRSARSHAALQG 60 M+Q+G TL++MM L + + + + A+ DD AR LR + G Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR-FEAQLRFVQQRGLQTG 59 Query: 61 QAVVVQSLDNDW 72 Q V + W Sbjct: 60 QFFGVSVHPDRW 71
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.9 bits (67), Expect = 0.026 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 6/69 (8%) Query: 141 SEPAVRLAAVRLLGETGDPLARTRLETLLQPDVETDAGVRTAAETSLAQVKRKLLFG--- 197 + P AA+R L E GD LA+ + E L T A + R LFG Sbjct: 409 NLPRPVRAAMRHLNEAGDVLAQVKTEIGLNLRKPKKTTPLTPA--IRPRFSRSSLFGFML 466 Query: 198 -ELLGQAFS 205 E++ A Sbjct: 467 AEVIAHAMV 475
>PF05272#Virulence-associated E family protein Length = 892 Score = 27.7 bits (61), Expect = 0.047 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 14 SHILRGLSFEAKVGEVTCLLGRNGVGKTTLLRCLMGL 50 H+ R + K L G G+GK+TL+ L+GL Sbjct: 583 GHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGL 619
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.9 bits (80), Expect = 6e-05 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 80 RNTVEHSVYIRGDQRGKGLGPQLMAALIERARGCGKHVMVAAIESGNAASVRLHERLGFV 139 +E + + D R KG+G L+ IE A+ ++ + N ++ + + F+ Sbjct: 89 YALIED-IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 140 VTG 142 + Sbjct: 148 IGA 150
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 49.8 bits (119), Expect = 8e-09 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 43/226 (19%) Query: 6 PARALGIDFGTSNSTVGWHRPGVESLIALEDGKITL--PSVVFFNIEERRPVYGRLALHE 63 + L ID GT+N+ LI ++ I L PSVV + A+ Sbjct: 9 FSNDLSIDLGTANT-----------LIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAAV-- 55 Query: 64 YLEGYEGRLM--RSLKSLLGSKLIKHDTSVLGSALPFKDLLGMFIGELKKRAETAADRSF 121 G++ + M R+ ++ + +K V+ + +L FI ++ + R Sbjct: 56 ---GHDAKQMLGRTPGNIAAIRPMKD--GVIADFFVTEKMLQHFIKQVHSNS---FMRPS 107 Query: 122 DQVVLGRPVFFVDEDPAADQEAEDTLADVARKIGFKDVSFQYEPIAAAFDYESGISREEL 181 +V++ PV + A +E+ A+ G ++V EP+AAA +S Sbjct: 108 PRVLVCVPVGATQVERRAIRES-------AQGAGAREVFLIEEPMAAAIGAGLPVSEATG 160 Query: 182 VLIVDIGGGTSDFTLIRLSPERHKVAERQSDILATGGVHIGGTDFD 227 ++VDIGGGT++ +I L + ++ + V IGG FD Sbjct: 161 SMVVDIGGGTTEVAVISL-----------NGVVYSSSVRIGGDRFD 195
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 5e-04 Identities = 34/182 (18%), Positives = 49/182 (26%), Gaps = 11/182 (6%) Query: 76 AEGAAAPEAPAAAPAPAAAPAAAEKPAAEAAPAPAAAPAAASVQDIHVPDIGSSGKAKII 135 E A EAP PAP A P+ + AE + + + A+ Sbjct: 1015 EEIARVDEAPVPPPAP-ATPSETTETVAENSKQESKTVEKNEQD-------ATETTAQNR 1066 Query: 136 EVLVKVGDTVEADQSLITLESDKASMEIPSPAAGVVKEVIAKLDDEVGTGDLIIKLEVAG 195 EV + V+A+ T E ++ E KE +E + EV Sbjct: 1067 EVAKEAKSNVKANTQ--TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 196 AAPAAAPAPAAAAAPAKAEAAPAAAPAAAAPAAAPAPVATAPAAGSNAKVHAGPAVRQLA 255 +P + A PA P A V Q Sbjct: 1125 VTSQVSPKQEQSETVQPQ-AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183 Query: 256 RE 257 E Sbjct: 1184 TE 1185
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.8 bits (69), Expect = 0.029 Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 312 QSDEIAFAGELADQFAQVITNHNRRTAASALHLFQRAVEQSASAFLLVNRDGVVE 366 SD++ + + Q + N A++ L + SA+ F L N+DG V+ Sbjct: 494 LSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVD 548
>PF06580#Sensor histidine kinase Length = 349 Score = 34.1 bits (78), Expect = 0.001 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 27/183 (14%) Query: 297 IERESERLQQMIERLLNLARVEQMQALEDEQQVALA---ALVDELLLAHAARIDASGLQV 353 I + + ++M+ L L R + +QV+LA +VD L + + + LQ Sbjct: 186 ILEDPTKAREMLTSLSELMR--YSLRYSNARQVSLADELTVVDSYLQLASIQFEDR-LQF 242 Query: 354 RQRVPAGLWLLCDPFLMRQALA-NLLDNALDFTPPGGALLFELERDGERVALSLFNQGEA 412 ++ + + P ++ Q L N + + + P GG +L + +D V L + N G Sbjct: 243 ENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL 302 Query: 413 IPAYAIGRVAERFYSLPRPGSGRKSTGLGLNFVAEVMQLHGG---ALAVSNVDGGVRVRL 469 + ++STG GL V E +Q+ G + +S G V + Sbjct: 303 AL-----------------KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMV 345 Query: 470 WLP 472 +P Sbjct: 346 LIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 3e-17 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Query: 2 PHILIVEDEAAIADTLIYALQAEGHSTAWVTLGTAALEQQRQRPADLVILDIGLPDISGF 61 IL+ +D+AAI L AL G+ + DLV+ D+ +PD + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DTCRQLR-RFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMA 120 D +++ ++PV+ +SA++ + + E GA DY+ KPF E+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 PRVEPPAETA 130 R + + Sbjct: 124 RRPSKLEDDS 133
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 450 bits (1160), Expect = e-158 Identities = 183/482 (37%), Positives = 250/482 (51%), Gaps = 44/482 (9%) Query: 9 SQAQVLLVDDDPHLRQALSQTLDLAGLKVVALADAQGLAERLEPDWPGVVVSDIRMPGID 68 + A +L+ DDD +R L+Q L AG V ++A L + +VV+D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 69 GLQLLEQLHGRDNELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASEALLDSVRRALAL 128 LL ++ +LPVL+++ A++A GAYD+L KPF L+ + RALA Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 129 RRLVLDNRSLRLALSDRQQLATRLVGHSPAMQRLREQIGALAGTRADVLILGETGAGKEV 188 + L D Q LVG S AMQ + + L T ++I GE+G GKE+ Sbjct: 122 PK------RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKEL 175 Query: 189 VARALHDLSSRRDGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTL 248 VARALHD RR+GPFVAIN A+ ++ESELFGHE GAFTGAQ R G+FE A GGTL Sbjct: 176 VARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTL 235 Query: 249 FLDEIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRAD 308 FLDEI M +D Q +LLR+LQ+ +GG I D+RI+AAT +DL+QS +QG FR D Sbjct: 236 FLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFRED 295 Query: 309 LYYRLNVAPLRIPPLRERGDDILVLFQHFADTASQRHGLPPQTLQPAHRAMLLRHAWPGN 368 LYYRLNV PLR+PPLR+R +DI L +HF A + GL + ++ H WPGN Sbjct: 296 LYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGN 354 Query: 369 VRELQNAAERFALGLE--------LALDHQAPAAAAPT---------------------- 398 VREL+N R + + ++ +P Sbjct: 355 VRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQ 414 Query: 399 -------APLQLGNLSEQVEQFERSLIAAELGQPHSSMRSLAEALGIPRKTLHDKLRKHG 451 A G + + E LI A L + A+ LG+ R TL K+R+ G Sbjct: 415 YFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474 Query: 452 LS 453 +S Sbjct: 475 VS 476
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.004 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 26/106 (24%) Query: 359 ILSNALRY----TPEGNEISVQIEQTRETVTLSVRNSGVTIDPQHIGKIFHRFYRADPAR 414 ++ N +++ P+G +I ++ + TVTL V N+G Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-------------------SLA 303 Query: 415 REGGPSNAGLGLSITRSIIEAHSG---RIWCTSAEGVTTFFISLPA 457 + + G GL R ++ G +I + +G + +P Sbjct: 304 LKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 7e-24 Identities = 37/117 (31%), Positives = 62/117 (52%) Query: 2 KLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGWE 61 +LVA+D+ L Q L+ AG+ V + + DL++ DV+MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118 +L +I+ A D+PVL ++A++ +K E GA DYL KPF +EL+ + L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 32.3 bits (73), Expect = 0.005 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 9/56 (16%) Query: 208 DFVDDVSEKGWSAAVADRKMWAEMKMSPTDLADVSGYT---YT----YLMNGQAPN 256 DF DDVS KG + W+ K++P +LADV+ Y YT YL++ N Sbjct: 253 DFKDDVS-KGDLWGKENYSDWSN-KLTPNELADVNDYMRGGYTAINNYLISNGPLN 306
>CHLAMIDIAOMP#Chlamydia major outer membrane protein signature. Length = 393 Score = 32.3 bits (73), Expect = 0.003 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 319 EVGLRLRYEIVRQFAPYIGVTWSRSYGNTADFIR 352 + L L Y + F PYIGV WSR+ + AD IR Sbjct: 272 QASLALSYRL-NMFTPYIGVKWSRASFD-ADTIR 303