>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2705), Expect = 0.0 Identities = 355/569 (62%), Positives = 444/569 (78%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPATKVSLAQLFSIF 569 ETY V DG+ +T +PAT + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 150 bits (381), Expect = 1e-42 Identities = 77/384 (20%), Positives = 140/384 (36%), Gaps = 86/384 (22%) Query: 5 IGIDLGTTNSAMAVYEG----NEAKIIA-NKEGKNTTPSIVAFTDKGEILVGESAKRQAV 59 + IDLGT N+ + V NE ++A ++ + S+ A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA--------VGHDAKQMLG 64 Query: 60 TNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKIL 119 P I +I+ + ++G A + +++ + Sbjct: 65 RTPGN-IAAIRPM-----------------------KDGVIA-----DFFVTEKMLQHFI 95 Query: 120 MKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYG 179 ++ ++ ++ VP +R+A +E+ AG + +I EP +AA+ G Sbjct: 96 KQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 180 LDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFK 239 L E+ MV D+GGGT +V V+ V +GGD FD +I+++ + Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 240 SETGIEIKNDVMALQRLKEAAENAKKELSSAM----ETEINLPFITADATGPKHLVKKLT 295 S G + AE K E+ SA EI + P+ + Sbjct: 208 SLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-S 253 Query: 296 RAKFESLTEDL----------VEETISKIEGVIKDAGLTKNEISEVVMVGGSTRIPKVQE 345 E+L E L +E+ ++ I + G +V+ GG + + Sbjct: 254 NEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALLRNLDR 305 Query: 346 RVKAFIHKELNKSVNPDEVVAVGA 369 + + + +P VA G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGG 329
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 220 bits (562), Expect = 5e-77 Identities = 56/145 (38%), Positives = 89/145 (61%), Gaps = 7/145 (4%) Query: 8 VESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRLKQPNKDHMDMPSLHSLEHLVAEI 67 ++SF +DHT++ AP VR+A + GD I +D+R PNKD + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120 +RNH ++D SPMGC+TGFY++++ + ++ + M+DVLK ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAQNLARTFLD 145 NE QCG AA H+L+ A+ +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 30.6 bits (69), Expect = 0.019 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Query: 176 PISAMASAVGVPAILISAMTGKILFFVSLFV------PFFIVFLMDGFKGIKETFPAVFI 229 P A+ V +IL+S + K V F+ P LM ++ P + + Sbjct: 176 PCVLTVVAIAVVSILLSVVVPK---VVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLL 232 Query: 230 AAFSFAIA 237 A + +A Sbjct: 233 ALLAGFMA 240
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 28.7 bits (64), Expect = 0.019 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 146 FDTAYAEALTQKKVFGVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLDAIQRG 205 F +L ++K+ +++ ++ VEE YL + ++ +L + Sbjct: 60 FSERKELSLDKRKL------SDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNS 113 Query: 206 EVLEIVALIAYLNSLGN 222 + + L AYL Sbjct: 114 PNISLSQLKAYLEGKSE 130
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.1 bits (112), Expect = 6e-08 Identities = 55/283 (19%), Positives = 108/283 (38%), Gaps = 16/283 (5%) Query: 36 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKVSFALIALSFLICYFD 95 L+ S +T H L + LM + L LS + VS A A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 96 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKKALVGGFIFSAVGIGSVFSGFV 154 + PF W L+I R +AG+ + A + +++A GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 155 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLK-----NRSLKKKSVKKEESAFKIPFHL- 208 + ++ + + F+ L R ++ ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 209 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPAIAGTSWALFG-FGATLGSLISGP 264 L+ + + +G +P L WV + + G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 265 MAQKLGAKNANIFILILKSIACFLPIFFHQISLLNLSIFIMGA 307 +A +LG + A + +I L F + + + ++ + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS 312
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 189 bits (481), Expect = 2e-62 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDA 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGNLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G ++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.5 bits (63), Expect = 0.004 Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 46 SFQDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQK 93 +FQ+ E+R + IER K ER++ L + +++ L + K E QK Sbjct: 149 AFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQK 196
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 199 bits (507), Expect = 5e-58 Identities = 116/461 (25%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FSAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVVDTPQDFSGAI 413 + E I P VI E K E H+ V P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.0 bits (96), Expect = 1e-05 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVVDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ + PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 299 bits (767), Expect = e-103 Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 14/300 (4%) Query: 2 KDFSLDFSKESVQKLFNQLAKDTFLLLLPILIILVVVAFLSNVLQFGWLFAPKVIEPKFS 61 + L FS +++ + + + + F L P+L + ++A S+V+Q+G+L + + I+P Sbjct: 62 EQSYLPFS-QALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIK 120 Query: 62 KINPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGEL------NHAAFLNLQ 115 KINPI G K +FS+K L++ LKV L L + I L L L Sbjct: 121 KINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLL 180 Query: 116 GQLLWFKSKALLLISSLLFLFFILAFIDLAIKRRQYTNSLKMTKQEVKDEYKQQEGNPEI 175 GQ+L + L++I ++ F+ +++ D A + QY LKM+K E+K EYK+ EG+PEI Sbjct: 181 GQIL----RQLMVICTVGFV--VISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEI 234 Query: 176 KAKIRQMMLKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGMDYLAIR 234 K+K RQ + + M + + +++VVV NPTH A+ + + E P+P+V K D Sbjct: 235 KSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQT 294 Query: 235 IKGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLEQERQKQKII 294 ++ IA E + I++ LAR LY D ++ IP E EA A V + + E+Q +++ Sbjct: 295 VRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML 354
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 97.6 bits (243), Expect = 3e-26 Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 18/202 (8%) Query: 89 AERKIGDWIFSSAVFFFALALIEAIIIICLLPLKEKVPYLVTFSNATQNFAIVQR--ADK 146 +K+ + A ALA + + L PLK PY++T T +I + D Sbjct: 30 RSKKLAWVV---AGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDA 86 Query: 147 SIRANQALIRQLIASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEH- 203 +I ++A+ + +A+YV RE + +E + + + SA D + + ++ Sbjct: 87 TITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSRFYKTDNP 142 Query: 204 ----SIYTNINLTRKISIINIALISKTQANIEISAQLFNKEKLESEKRYRIIMTFEFEPI 259 +I N + I ++ + A + + + ++ + ++ + Sbjct: 143 QSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATIKYKVDGT 200 Query: 260 EIDTKSVPLNPTGFIVTGYDVT 281 NP G+ V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 28.1 bits (62), Expect = 0.030 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 28/139 (20%) Query: 9 INEQQKAKAWSDFFKELKKDMKEIYNKFGGNAEWTTFLTRFSNDLSRASNYAEFETLQSI 68 + +++ A W KK+ + + + L + D + SNY++ Sbjct: 51 LKDKENAIQWE------KKEAERVEKNLDTLEK--EALELYKKDSEQISNYSQTRQYFYD 102 Query: 69 YS-------KELEELQQTITTNKTQQQLL-------EQDNIDFELQSALQNDLKDLEHLS 114 Y KE + L+ I+ NK + + E+ + E+++ QN++ S Sbjct: 103 YQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEI------S 156 Query: 115 DNKYKDDEEQIIQKSFEQD 133 K+ + +E I K F+QD Sbjct: 157 LEKFNELKETIQDKLFKQD 175
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (316), Expect = 2e-37 Identities = 79/250 (31%), Positives = 113/250 (45%), Gaps = 11/250 (4%) Query: 5 GKNVLITGASKGIGAEIARTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDA 64 GK ITGA++GIG +ARTLAS G + N E + + + L+ + A D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHI-AAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 ASESGFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCRE 124 + E I + G + LVN AGV+R L + E++ N T F R Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 ALKIMSKSRFGSVVNIASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVT 184 K M R GS+V + S Y++SK + +K E A NIR N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 185 PGFIETDMNANL--KDELKADYVK--------NIPLNRLGSAKEVAEAVAFLLSDHSSYI 234 PG ETDM +L + +K IPL +L ++A+AV FL+S + +I Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 TGETLKVNGG 244 T L V+GG Sbjct: 247 TMHNLCVDGG 256
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1717 bits (4448), Expect = 0.0 Identities = 933/1210 (77%), Positives = 1026/1210 (84%), Gaps = 76/1210 (6%) Query: 1 MTNETIDQTTTPDQTLNQTDFVPQRFINNLQVAFLKVDDAVASFDPDQKPIVDKNDRDNR 60 MTNETIDQ Q + F PQ+FINNLQVAFLKVD+AVAS+DPDQKPIVDKNDRDNR Sbjct: 1 MTNETIDQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR 55 Query: 61 QAFEKISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFKKFGDQ 120 QAFE ISQLREEY+NKAIKNPTKKNQYFSDFINKSNDLINKDNLI V+SS +SF+KFGDQ Sbjct: 56 QAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQ 115 Query: 121 RYQIFTSWVSLQKDPSKINTQQIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ 180 RY+IFTSWVS Q DPSKINT+ IRNFMENIIQPPI DDKEKAEFL+SAKQSFAGIIIGNQ Sbjct: 116 RYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQ 175 Query: 181 IRSDEKFMGVFDESLKERQEAEKNGEPDGGDWLDIFLSFVFNKKQSSDLKETLHQEPRPD 240 IR+D+KFMGVFDESLKERQEAEKNGEP GGDWLDIFLSF+F+KKQSSD+KE ++QEP P Sbjct: 176 IRTDQKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPH 235 Query: 241 FEQNIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDAEGVADIDPNYKFNQLLIH 300 + +IATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLD EGVADIDPNYKFNQLLIH Sbjct: 236 VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH 295 Query: 301 NNALSSVLMGSHSNIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGSNVATLINAHLNN 360 NNALSSVLMGSH+ IEPEKVSLLYG NGGP ARHDWNATVGYK+QQG+NVAT+IN H+ N Sbjct: 296 NNALSSVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKN 355 Query: 361 GSGLVIAGNEDGIKNPSFYLYKQDQLTGLKQALSQEEIQNKVDFMEFLAQNNARLDSLSE 420 GSGLVIAG E GI NPSFYLYK+DQLTG ++ALSQEEIQNK+DFMEFLAQNNA+LD+LSE Sbjct: 356 GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSE 415 Query: 421 KEKEKFQTEIEDFQKDRKAYLDALGNDHIAFVSKKDPKHLALVTEFGNGEVSYTLKDYGK 480 KEKEKF+TEI+DFQKD KAYLDALGND IAFVSKKD KH AL+TEFGNG++SYTLKDYGK Sbjct: 416 KEKEKFRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK 475 Query: 481 KQDKALDGETKTTLQGSLKYDGVMFVNYSNFKYTNASKSPDKGVGTTNGVSHLEANFSKV 540 K DKALD E TLQGSLK+DGVMFV+YSNFKYTNASK+P+KGVG TNGVSHLE F+KV Sbjct: 476 KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKV 535 Query: 541 AVFNLPNLNNLAITNYIRRDLEDKLWAKGLSSQEANKLIKDFLNSNKELVGKVSNFNKAV 600 A+FNLP+LNNLAIT+++RR+LEDKL KGLS QEANKLIKDFL+SNKELVGK NFNKAV Sbjct: 536 AIFNLPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAV 595 Query: 601 AEAKNTGNYDEVKKAQKDLEKSIRKREHLEKEVAKKLESRNDNKNGMEAKAQANSQKDKI 660 A+AKNTGNYDEVKKAQKDLEKS+RKREHLEKEV KKLES++ NKN MEAKAQANSQKD+I Sbjct: 596 ADAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEI 655 Query: 661 FALINQEASKEARAAAFDPNLKGIRSELSDKLENINKNLKDFGKSFDELKNGNNKDFSKA 720 FALIN+EA+++ARA A+ NLKGI+ ELSDKLEN+NKNLKDF KSFDE KNG NKDFSKA Sbjct: 656 FALINKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKA 715 Query: 721 EETLKTLKDSMKDLGINPEWISKVENLNAALNDFKNGKNKDFSKVTQAKSDLENSIKDVS 780 EETLK LK S+KDLGINPEWISKVENLNAALN+FKNGKNKDFSKVTQAKSDLENS+KDV Sbjct: 716 EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI 775 Query: 781 INQKITDKVDNLNQAVSEAKLTGDFSKVEQALAELKNLSLDQI------------GKNSD 828 INQK+TDKVDNLNQAVS AK TGDFS+VEQALA+LKN S +Q+ K S+ Sbjct: 776 INQKVTDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSE 835 Query: 829 LQKSVKNGVNGTLVGNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNNTEPIY 888 + +SVKNGVNGTLVGNGLS+ EATTL+KNFSDI+KELN KL +NNNNNGLKN Sbjct: 836 IYQSVKNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNNNGLKN------ 889 Query: 889 AQVNKKKAGQATSPEEPIYAQVNKKKAGQATSPEEPIYTQVAKKVNARIDRLNKIASTIN 948 EPIYA+VNKKKAGQA S EEPIY QVAKKVNA+IDRLN+IAS Sbjct: 890 ---------------EPIYAKVNKKKAGQAASLEEPIYAQVAKKVNAKIDRLNQIAS--- 931 Query: 949 GKIDQLNRTASANKGVGDFSGVGQAASPEPIYATIDFDEANQAGFPLRRSAAVNDLSKVG 1008 VGQA AGFPL+R V+DLSKVG Sbjct: 932 -----------------GLGVVGQA-----------------AGFPLKRHDKVDDLSKVG 957 Query: 1009 LSREQELTRRIGDLNQAVSEAKTGHFGKLEQKIDELKDSTKKNAVSLWVESAKQVPTGLQ 1068 LSR QEL ++I +LNQAVSEAK G FG LEQ ID+LKDSTK N ++LWVESAK+VP L Sbjct: 958 LSRNQELAQKIDNLNQAVSEAKAGFFGNLEQTIDKLKDSTKHNPMNLWVESAKKVPASLS 1017 Query: 1069 AKLDNYATNSHTRINSNVKNGGINEKATGMLTQKNPEWLKLVNNKIVAHNVGSIPLSDYD 1128 AKLDNYATNSH RINSN+KNG INEKATGMLTQKNPEWLKLVN+KIVAHNVGS+PLS+YD Sbjct: 1018 AKLDNYATNSHIRINSNIKNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYD 1077 Query: 1129 KIGFNQKNMKDYSDSFKFSTKLNNAVKDIKSSFVQFLTNTFSQGS-YNLMKANVEHGVKN 1187 KIGFNQKNMKDYSDSFKFSTKLNNAVKD S F QFLTN FS S Y L + N EHG+KN Sbjct: 1078 KIGFNQKNMKDYSDSFKFSTKLNNAVKDTNSGFTQFLTNAFSTASYYCLARENAEHGIKN 1137 Query: 1188 TNTKSGFQKS 1197 NTK GFQKS Sbjct: 1138 VNTKGGFQKS 1147
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.005 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTFHQRHDDKEITKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K K D KE+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNDNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (300), Expect = 3e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVASIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 869 bits (2245), Expect = 0.0 Identities = 514/522 (98%), Positives = 516/522 (98%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDVPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVD PDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EEAVKQRAKDKINIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EEAV+QRAKDKI+IKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 37.4 bits (87), Expect = 8e-05 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 17/183 (9%) Query: 215 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 274 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 275 F------PYAEEVKIKYGDLSFESGEETPPQSVQIP--TTGSDGNESHVVPLSKIQTIMR 326 + AE +K + G S G+E + +++ + ++I ++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDE--VREIEVRGRNLAEGVPRGFTLNSNEILEALQ 261 Query: 327 DRALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA- 382 + + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 262 EPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAED 320 Query: 383 PME 385 P+ Sbjct: 321 PLT 323
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 28.1 bits (62), Expect = 0.021 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 11/83 (13%) Query: 46 KNQKEFEDFIKDREVLEKELDQKV--------KESLRTYEKEQKELILETIGKQLQEQQE 97 K QK+ E ++ RE LEKE+++K+ K + QK+ I I K+ Sbjct: 609 KAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDAR 668 Query: 98 SLNKDYGKKLEGIK-EHSDRLEN 119 ++ Y + L+GIK E SD+LEN Sbjct: 669 AIA--YAQNLKGIKRELSDKLEN 689
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.002 Identities = 25/145 (17%), Positives = 49/145 (33%) Query: 27 GATKKELKQLQVNSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ + E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKPLKSNA 171 + ++ E ++ E+ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 139 bits (352), Expect = 4e-43 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 22/167 (13%) Query: 1 MDKETVAGDVSAKAVQSAPVSTETVQEKQEPKQEPAPVVEKKPAVESGTIIASIYFDFDK 60 D ++ VS + Q P PAP V+ K T+ + + F+F+K Sbjct: 178 PDNGMLSLGVSYRFGQGEAAPVV------APAPAPAPEVQTK----HFTLKSDVLFNFNK 227 Query: 61 YEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVI 117 +K Q LD++ + V++ G TD GS YNQ L +R SV + L+ Sbjct: 228 ATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLIS 287 Query: 118 KGVEKDMIKTISFGETKPKCTQKT---------KECYKENRRVDVKL 155 KG+ D I GE+ P +C +RRV++++ Sbjct: 288 KGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 29.9 bits (67), Expect = 0.026 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 196 YVAIGQKESTVAQVVRKLEEYGAMEYSVVINASASDSAAMQYLAPYSGVAMGEYFR-DHA 254 Y+ +G K T Q+ +L YG EY+V N + + A ++G+ G+Y D+ Sbjct: 56 YMRVGFKGET--QINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGLKFGDYGSFDYG 113 Query: 255 RHALIIYD 262 R+ ++YD Sbjct: 114 RNYGVLYD 121
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.2 bits (73), Expect = 0.002 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 81 EPEIQILKALKPDFIVVVAYGKILPKEVLSIAP 113 EP +++L +KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>PF01540#Adhesin lipoprotein Length = 475 Score = 31.2 bits (70), Expect = 0.015 Identities = 68/321 (21%), Positives = 137/321 (42%), Gaps = 28/321 (8%) Query: 140 KNCKEKVEKRQKKIKDENSAETLSAKQ----ESEIKKYDKEIEKIRKKVTSKTIQI--IL 193 K+ ++KV++ KKI DEN AK+ +I+ + I K+ K QI Sbjct: 103 KSEQQKVDQANKKIADENLKIKEGAKELLKLSEKIQSFADTIALTITKLEGKKFQIDETF 162 Query: 194 DEIKINNICEVSKNHFKYQEDA-LTNLEKDFNELD-EAMKEFDDLKEMELPKDYQTIKD- 250 + I+ I ++K + + A + ++KDF + E+ KEF+ ++ +++ +K Sbjct: 163 KKQLISTIELLNKKSAEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIVSEWEEVKKA 222 Query: 251 --KLESLFSFDIDKEVGQVSEKIKEHISKVGREFIEKGIKLQKEMPDNACPFCTQKITNN 308 K + + DK++ + ++KIKE ++ +KL +++ A Sbjct: 223 WSKELAEIKAEDDKKLAEENQKIKEGAKEL--------LKLSEKIQSFADTIALTITKLE 274 Query: 309 IIQAYTSYFNESVEQFNQDSLEISGTLKKILNQWNIKE--ILQSFERFEPFMEGFLKEKK 366 F + + + + S +K IK+ +L E F+ F +L++ Sbjct: 275 RKFQIDEKFKKQLISTIELLNKKSVEVKTFATVNTIKKDFLLSELESFKEFNTSWLEKIV 334 Query: 367 S-LENALEQIKDSLEELQKEVDKKEGAKNK------EKFQKIDKKLLEIQENIQQCVGET 419 S E + L E++ E DKK +N+ E+ +KI+ + E+ + + + + E Sbjct: 335 SEWEEVKKAWSKELAEIKAEDDKKLAEENQKIKNGVEELKKINNEAFELSKTVNKTIAEL 394 Query: 420 GKILNQKKEQKKKLKKLKTEL 440 K K++LK +L Sbjct: 395 EKKFKIDVSFKEQLKNFADDL 415
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 5e-06 Identities = 23/170 (13%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 51 RAQYQSHFKMLEQKEEALKEREKEQKAKFDDAVKQASALALQDEKAKIIEEARKNAFLEQ 110 + Q+ + QKE L ++ E+ + + ++ + + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLETEKER 170 LE + + E EL ++++E+++ E A+ + + NE L+ ++ Sbjct: 252 HAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT 307 Query: 171 IEKALHEKNELKFKQQEEQLEMLKNELKNAQRKAELSSQQFQGEVQELAI 220 + +L + + + +A +S +VQ+L + Sbjct: 308 TDNI---------GLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 429 bits (1104), Expect = e-147 Identities = 165/575 (28%), Positives = 279/575 (48%), Gaps = 69/575 (12%) Query: 10 RLILAIALSFLFIALYSYFFQKPNKT--TTPTTKQETTNNHTATSSNTPNAFNATQTIPQ 67 R +L IAL F+ ++ + Q N TT+ TT +A P + + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVK 64 Query: 68 ENLLSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVSHLFNPKANPQTPL 125 ++L + I++ G + + K L Q L S F +A Sbjct: 65 TDVL--------DLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTG 116 Query: 126 KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLNTLTIIK 183 ++ P A+ +PL +N A G NE V D T K Sbjct: 117 RDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTK 163 Query: 184 TLTFYDDLHYDLKIAFKSPN------------------KIIPSYVITNGYRPVADLDSYT 225 T Y + + + N + P + + +T Sbjct: 164 TFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL-----HT 217 Query: 226 FSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALID 282 F G D+K EK + D + + S +++ + +YF T + G Sbjct: 218 FRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYT 276 Query: 283 SEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLIT 331 + +G N + I K++ N ++GP+ + A++P L ++YG + Sbjct: 277 ANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW 334 Query: 332 FFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAPKMKEIQ 391 F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ + PK++ ++ Sbjct: 335 FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMR 394 Query: 392 EKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILW 451 E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LW Sbjct: 395 ERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALW 454 Query: 452 IHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKFLPLLFTIFLITFPAGLV 511 IHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI F+P++FT+F + FP+GLV Sbjct: 455 IHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLV 514 Query: 512 LYWTTNNILSVLQQLIINKVLENKKRVHAQNKKES 546 LY+ +N+++++QQ +I + LE K+ +H++ KK+S Sbjct: 515 LYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (571), Expect = 3e-78 Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMIQLATKGFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 30.1 bits (67), Expect = 0.049 Identities = 66/297 (22%), Positives = 113/297 (38%), Gaps = 34/297 (11%) Query: 417 FDEAVSDKVVLDLNYEARSVDQYVSSPEKLDEYF---ELKTQNLNDTAKTELKKKWANLQ 473 FD A + VV+DL +RS +Q P+ E F EL NL + K++ Sbjct: 278 FDRASGEPVVIDLGLHSRSGEQ----PKGFTESFKAPELGVGNLGASEKSD--------- 324 Query: 474 KVFSTKNRLEHIVQDIVLDMAKLPRLSNGKGNAMLVAESVYNACRYFELFLETELKDKVA 533 VF + L H ++ K P + +G + +E + E Sbjct: 325 -VFLVVSTLLHCIE----GFEKNPEIKPNQGLRFITSEPAH---VMDENGYPIHRPGIAG 376 Query: 534 VITSYEPNIADLKDCGSNESEESYKYRAYCKMLQNFFNEKDEKKALNKTKEFEEEVKKRF 593 V T+Y I D+ ++ +S + R + + +E+ K+ L T E Sbjct: 377 VETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAKQILKDTLTGEMSPLSTD 436 Query: 594 INEPARMKLLIVVDKLLTGFDAPSLTYLYIDKKMQD-HGLFQAVCRVNRLDGEDKD---- 648 + KL + D L T + + L + + D + A+ + R G DKD Sbjct: 437 VRRITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKS 496 Query: 649 FGYII--DYSDLFDSLQEAHSDYTNGAFE--NYEREDIQ-GFISDKAQKIKKKLEET 700 F +I Y + D ++ D N + E Y R + + Q+I+K L++T Sbjct: 497 FNSLILKTYRVIEDYVKGREGDTKNSSTEVSPYHRSNFMLSIVEPSLQRIQKHLDQT 553
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 114 bits (286), Expect = 2e-29 Identities = 69/358 (19%), Positives = 144/358 (40%), Gaps = 25/358 (6%) Query: 97 AKDLAYKSENFILRLEMIPKKANLMILDKEKCVIEA--FRFNDRVAKNDILG-ALSPNTY 153 + ++ ++ +N + L + K + + I++ F FN N +G Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMS 268 Query: 154 EHQEEDLDFKGLLDILEKDFLSYQHKE-LEHKKNQIIKRLNMQKERLKEKLEKLEDPKNL 212 + + + + +LE + + + L+ K + + K + R +K + L + Sbjct: 269 KEDYKKIQYDSSSKLLENFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKK 328 Query: 213 QLEAKELQTQASLLLTYQHLINKHESRVVLKDF---EGKECMIEIDKSMPLNAFINKKFT 269 + + LL + + K S + L ++ I +D++ + + + Sbjct: 329 CEDKDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYK 388 Query: 270 LSKKKKQKSQFLYLEEENLKEKIAFKENQINYVKGA---------KEESVLEMFM---PV 317 K K+ + + +E++ + + + + A K+E + ++ + Sbjct: 389 KYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKI 448 Query: 318 KNSKTKRPMSGYEVLYYKDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFC 376 SK + + I +GKN +N L L+ A +D+W H ++IPGSH+IV Sbjct: 449 YKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKN 508 Query: 377 QKNAPKDEVIMELAKMLIKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 + P + ++E A + K +S +DYT+ K VK GA VIYS +TI Sbjct: 509 IMDIP-ESTLLEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 33.7 bits (77), Expect = 0.002 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NVPYIGLSKNPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.019 Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAID-AIEALEESDQGQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I I L + G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGIKHGIAQLPQ--GGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 355 bits (913), Expect = e-124 Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIANVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIA++ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKSPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L++P+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIVVHPIVVTSQDITLKITKEPLDN--------SKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.029 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.009 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 332 bits (853), Expect = e-113 Identities = 107/300 (35%), Positives = 172/300 (57%), Gaps = 15/300 (5%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKIKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + ++P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKK 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (894), Expect = e-122 Identities = 120/338 (35%), Positives = 207/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDEFSMSEKIAILLIQVGEDATGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + + +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEGEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.005 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDEFSMSEKIAILLIQVGEDATGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 139 bits (353), Expect = 3e-37 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNHLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY 372 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 32.5 bits (74), Expect = 0.005 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLIQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.9 bits (93), Expect = 1e-05 Identities = 58/308 (18%), Positives = 105/308 (34%), Gaps = 53/308 (17%) Query: 35 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 94 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 95 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 148 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 149 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALFSLFLRNIM 208 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 209 EETMDSQTTFKTTIKEKTQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTN 268 ++ + + F +L + + T + IF+ + Sbjct: 190 KKEVRIKGHFDI----------KGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKH 239 Query: 269 SSSFSPK-------ESSFIMLLALSYFILLQPLCG---MLADKIKRTQMLMVFAIAGLIV 318 + ++ M+ L I+ + G M+ +K L I +I+ Sbjct: 240 IRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 319 TPVVFYGI 326 P I Sbjct: 300 FPGTMSVI 307
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 30.7 bits (69), Expect = 0.018 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 7 NTENDNNTEKHKTSNHPKKEES-LQENVQKEMIEEMIKEN--IKEEEKEAQNAPSFSPIT 63 N +N NTE T+ PK E S L + +++M+ N IK KE + Sbjct: 37 NKQNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDMIKLAPKEMPLESAEKEEK 96 Query: 64 PTSAKKPVMVKELSENKEILDGLDYGE 90 + K E + + L+Y E Sbjct: 97 KSEDNKKSEEDHTEEINDKIYSLNYNE 123
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 29.5 bits (66), Expect = 0.029 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 392 WVFGGGVHKKWLWGTLWRWTSGTLA-NEASAAVNVGYKISKSLTASVKLEYLGVMTHSG 449 W G + T + +G N+ A GY+++ + + ++LG M + G Sbjct: 28 WYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKG 86
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.5 bits (68), Expect = 0.005 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%) Query: 5 KIKRKLNHFIGNILARTEVYKKLVAKYDDLTGKYDDLTGKYDDLTGKYDDL---TGKYDD 61 ++ ++ +G T++Y+ + K D YD T K K L Y Sbjct: 124 QVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQ 183 Query: 62 ----LTGKYDDLTGKYESLLAKEANIKETFWERRADSEKEAFFLEHFYLTS 108 + + T E+L + + +A +EK L F T+ Sbjct: 184 AEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGTA 234
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.5 bits (63), Expect = 0.015 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDKELSAQNEVVL 111 G+L+ I VE LS I + D L+ P++ E++ ALDKEL A+ + L Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-10 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKS-NILEIHEMLRKTL 312 F++L IK LPV++ S+ ++ A A ++ K ++ E+ ++ + L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 313 S 313 + Sbjct: 120 A 120
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.8 bits (69), Expect = 8e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVGSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 272 bits (696), Expect = 1e-75 Identities = 101/394 (25%), Positives = 179/394 (45%), Gaps = 14/394 (3%) Query: 2812 NAVNWLNALFVAKGGNPLFAPYYLQDNSTEHIVTLMKDITSALGMLTKPSLKNNSTDVLQ 2871 + L L + + +A + S I + T+ L + K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2872 LNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2931 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2932 LWATGVGGVSFVGNGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITSSKS 2986 +WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2987 DNVDVGLYARAFIKKSELTFSVNETWGANKTQISSADTLLSVINQSHKYNTWTTNARVNY 3046 +N + G+Y+R F + E F G++++ ++ LL +NQS+ Y ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3047 GYDFMFKNKSVIIKPQISLGYYYIGMTGLEGVMNNALYNQFKANADPSKKSVLTIDFAFE 3106 GYDF F ++++KP + + Y ++G T + + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3107 NRHYFNTNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELYNTFASITTGGEVR 3166 R+Y+ SYFY G+ ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3167 LFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3200 L K + N G L + + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 32.3 bits (73), Expect = 0.037 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 6/97 (6%) Query: 664 VFDSVNFNKAYYKFQGAENSYTFKNTNFLAGNFKFQGKTTIEKSVLNDASYTFDGINNAF 723 V VNFN A + + G + + Y + Sbjct: 281 VTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDK-- 338 Query: 724 NENQFNGGSFNFNHADQTDAFNNNSFNGGSFSFNAKQ 760 + + N D+ ++ NNS N+ Q Sbjct: 339 ----PSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQ 371 Score = 31.9 bits (72), Expect = 0.049 Identities = 48/299 (16%), Positives = 92/299 (30%), Gaps = 43/299 (14%) Query: 223 KNTTFSNQTPNGGFNVMGRKITYNGGIVNGGNFGFDNVDSNGATTISGVTFNNNGALTYK 282 + ++ + G + + N G + D TT + + + Sbjct: 299 QAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNN 358 Query: 283 GGNG-IGGSITFTNSNINHYKL---------NLNANSVTFNNSALGSMPNGN-----TNT 327 I + + I ++ N N N +A G++ G T Sbjct: 359 SNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTN 418 Query: 328 IGNAYI----LNASNITFN----------NLTFNG--------GWFVFDRANANVHFQGT 365 + +I +N SN N+T +G G + ++AN F+ Sbjct: 419 AAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAG 478 Query: 366 TTINNPTSPFVNMSAKVTINPNAVFNIQNYTPSIGSAYTLFSMKNGSIAYNDVSNLWNII 425 T N T+ F N + V I + F+ + ++ V+N NI Sbjct: 479 TDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNIN 534 Query: 426 RLKNTQATKDNSKNATSNNNTHTYYVTYNLGGTLYNFRQIFSPDSIVLQSVYYGANNIY 484 +L A+ + + + N ++G + I S I + G +IY Sbjct: 535 KL--ITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 889 bits (2299), Expect = 0.0 Identities = 280/1025 (27%), Positives = 511/1025 (49%), Gaps = 40/1025 (3%) Query: 1 MFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESKVTDKIEEAVMGID 60 + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ VT IE+ + GID Sbjct: 14 VLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGID 73 Query: 61 GIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDSNIKKPSINKFDTD 118 + ++STS S+ + + F+ + A V NK+ +++ I+ + Sbjct: 74 NLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSS 133 Query: 119 SQAIISLFVSSSSVPAT--TLNDYAKKTIKPMLQKIDGVGGVQLNGFRERQIRIYADPTL 176 S ++ S + T ++DY +K L +++GVG VQL G + +RI+ D L Sbjct: 134 SSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQYAMRIWLDADL 192 Query: 177 MNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILVNANSYSVADVEKIQV- 229 +NKY LT D+ + LK +N +I G++ + Q SI+ + + K+ + Sbjct: 193 LNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLR 252 Query: 230 ----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKH 285 G+ VRL D+A++E+G E N A KP L I+ GAN ++ + L Sbjct: 253 VNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAE 312 Query: 286 IQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISI 344 +Q P ++ DTT +++ SI +V L +L LV++ FL+N TL+ I++ Sbjct: 313 LQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAV 372 Query: 345 PISVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK-KLEMGMNKRKASY 403 P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + +E + ++A+ Sbjct: 373 PVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATE 432 Query: 404 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALSYVVVVTIIPMV 463 + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+ALS +V + + P + Sbjct: 433 KSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Query: 464 SSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLIIFIAVVLVFVGSL 516 + ++ P + F+ W F + YT + +L + L+ G + Sbjct: 493 CATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMV 552 Query: 517 FVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQKAIEKHAEVEFTTL 572 + +L F+ +ED+G FL ++ G + + + Q + + K + + E FT Sbjct: 553 VLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVN 612 Query: 573 QVGY-GTTQNPFKAKIFVQLKPLKERKKEHELGQFELMRALRKELKSMPEAKGLESINLS 631 + G QN FV LKP +ER E ++ + EL + + + N+ Sbjct: 613 GFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGKIRDGF-VIPFNMP 668 Query: 632 EVSLLGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKIEGYHTSTSESQPQ 691 + L G ++ F + + D + L + + + + E Q Sbjct: 669 AIVEL---GTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQ 725 Query: 692 LQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMIIRVPDNKRVSVED 751 +L++ ++ A GVS I +S+A G + + F + G+ + ++ R+ ED Sbjct: 726 FKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLYVQADAKFRMLPED 784 Query: 752 IKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPKAGISLGEILTQVS 811 + +L VR+ +++ A + RYN S+ + + G S G+ + + Sbjct: 785 VDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALM- 843 Query: 812 KNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAALYESILEPFIIMVT 871 +N L G Y +TG + + + + +A +FV++++ LAALYES P +M+ Sbjct: 844 ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLV 903 Query: 872 MPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE-ERKKGLNIQEAI 930 +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + K+G + EA Sbjct: 904 VPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEAT 963 Query: 931 LFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPV 990 L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG++ + +L++ VPV Sbjct: 964 LMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPV 1023 Query: 991 FYRLL 995 F+ ++ Sbjct: 1024 FFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 5e-10 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 27 NVKAIQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQ 86 K I+ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKIGGAVDKNTLEGYEFN 108 RY + +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 30.2 bits (68), Expect = 0.007 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.006 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLINLSENILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>FLAGELLIN#Flagellin signature. Length = 507 Score = 246 bits (630), Expect = 9e-78 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFRVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.006 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Query: 27 NQTTELHHKNPYELLVATILSAQCTDARVNKITPKLFEKYPSVKDLALASLE--EVKEII 84 N+ E+ K E A ++ + T +I + K P+ K+L L E +V+++ Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 85 KSVSYSNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLEGVGQKTANVV 133 +++ S + AQKV+ G+ PS + ++++ + V + +NVV Sbjct: 189 ETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 48.1 bits (114), Expect = 1e-08 Identities = 23/67 (34%), Positives = 27/67 (40%) Query: 65 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKKPNHKHKALKKVEKV 124 A Q PP P P P P P P E P KPKPKPK K +++ K Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Query: 125 EEKKVVE 131 + K V Sbjct: 113 DVKPVES 119 Score = 42.3 bits (99), Expect = 9e-07 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 68 PTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPK-KPNHKHKALKKVEKVEE 126 P P + PP P P P E PK P KPK KP K K +KKV++ + Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 127 KKV 129 + V Sbjct: 112 RDV 114 Score = 40.7 bits (95), Expect = 3e-06 Identities = 19/66 (28%), Positives = 27/66 (40%) Query: 77 PTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKKPNHKHKALKKVEKVEEKKVVEEKKEE 136 P P P +P +P+P P+P + K K K + KKV E+ K + Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 137 KKIVEE 142 K VE Sbjct: 114 VKPVES 119 Score = 32.3 bits (73), Expect = 0.002 Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 58 PSKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPKKPN 112 P + P K P P PKP++K + +PK KP + Sbjct: 66 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.1 bits (68), Expect = 0.005 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLIDVLGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGMIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL + AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.8 bits (62), Expect = 0.043 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Query: 14 WVGTIIIVLLVIFFIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWI 66 W+G L ++ ++ S+VG ++ ++ PIP P++ Sbjct: 225 WLG--WQALPIVLLLS--------SLVGAFMGIGLILLRNHHQSKPIPFGPYL 267
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.7 bits (124), Expect = 2e-09 Identities = 52/290 (17%), Positives = 102/290 (35%), Gaps = 18/290 (6%) Query: 34 ALLSDIAKSFEMESATVGLMITLYAWVVSLGSLPLMLISAKIERKRLLLFLFALFILSHI 93 LL D+ S +A G+++ LYA + + L +S + R+ +LL A + + Sbjct: 30 GLLRDLVHS-NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88 Query: 94 LSALAWNFWVLLLSRMGIAFAHSIFWSITASLVIRVAPIGRKQQALGLLALGSSLAMILG 153 + A A WVL + R+ +A ++ + + + + + G ++ M+ G Sbjct: 89 IMATAPFLWVLYIGRI-VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 154 LPLGRIIGQILDWRSTFGVIGGVATLIALLMYKLLPP----------LPSKNAGTLASVP 203 LG ++G + F + L L LLP + N Sbjct: 148 PVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWA 206 Query: 204 TLMKRPLLMGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAG-VVGS 262 M + ++ ++ I F + + L FG+ + + Sbjct: 207 RGMTVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 263 FLFGRLYAK-NSRKFIAFAMILVICPQLLLFVFKNSEWVVFLQIFLWGIG 311 + G + A+ R+ + MI +L F W+ F + L G Sbjct: 265 MITGPVAARLGERRALMLGMIADGT-GYILLAFATRGWMAFPIMVLLASG 313
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 1e-04 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 9/130 (6%) Query: 96 DDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTSNIETNNQIKVEQE--- 152 + EVAQ+ E + + K + ++EK K +T KV + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETK------ETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 153 KQKTEQEKQKTSNIETNNQIKVEQEKQKTEQEKKEAENARDRANKSGMELEQERQKTIKT 212 KQ+ + Q + N V ++ +++ + S +E T+ T Sbjct: 1132 KQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191 Query: 213 QKDFIKDLEQ 222 +++ E Sbjct: 1192 GNSVVENPEN 1201 Score = 36.2 bits (83), Expect = 3e-04 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 11/129 (8%) Query: 98 QSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTSNIETNNQIKVEQEKQKTE 157 Q+++ +A+ + + E +E +T + K+ ++EK K E Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET--------ATVEKEEKAKVE 1115 Query: 158 QEKQKTSNIETNNQIKVEQEKQKTEQEKKEAENARDRANKSGMELEQERQKTIKTQKDFI 217 EK + +V +++++E + +AE AR+ ++ Q + T + Sbjct: 1116 TEKTQE---VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 218 KDLEQNCKE 226 K+ N ++ Sbjct: 1173 KETSSNVEQ 1181 Score = 34.3 bits (78), Expect = 0.001 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 102 EVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTSNIETNNQIKVEQ-EKQKTEQEK 160 + AEN++ + + + T Q ++ ++N + + E ++ E Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 161 QKTSNIETNNQIKVE-QEKQKTEQEKKEAENARDRANKSGMELEQERQKTIKTQ 213 ++T ET VE +EK K E EK + E + + S +QE+ +T++ Q Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQ-EVPKVTSQVSP---KQEQSETVQPQ 1142 Score = 29.3 bits (65), Expect = 0.039 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 15/119 (12%) Query: 98 QSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTS-----------NIETNNQ 146 QS+ QA+ EN K TEQ ++TS + T N Sbjct: 1135 QSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194 Query: 147 IKVEQEKQKTEQEKQKTSNIETNNQIKVEQEKQ---KTEQEKKEAENARDRANKSGMEL 202 + VE + T Q T N E++N+ K + + ++ DR+ + +L Sbjct: 1195 V-VENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.9 bits (64), Expect = 0.043 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 107 ATSLLLAACSVGDIDKQIELEQEKQKTEQEE--QKTEQEKQKTSNIETN------NQIKV 158 A S + A ++ + +E Q TE +E ++EK K +T +Q+ Sbjct: 1072 AKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 159 EQEKQKTEQEKQKTIKTQKDFIKDLEQNCQENHSQFFIKKLGIKGGIAIEIEAECKTPKP 218 +QE+ +T Q Q + D ++++ + ++ ++ + +E T Sbjct: 1132 KQEQSETVQ-PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 219 TKTNQTPIQPKHLPNSKQP 237 T + P + QP Sbjct: 1191 TGNSVVENPENTTPATTQP 1209
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 28.5 bits (63), Expect = 0.040 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%) Query: 45 KIKAFNKDYEILETTH-EVFEKERIDIAFFSAGGSVSEEFATSAAKTALVIDNTSFFRLN 103 K+ A + Y+ + +H + + I + G +S+ A S ID S Sbjct: 131 KVYATYRKYQAIRISHGNISDDGSI---YKLTGIWLSKTSADSLGN----IDQGSLIETG 183 Query: 104 KKVPLVVPEINAKEIFNAPLNIIANPNCSTIQMTQIL--NPLHLHFKIKS 151 ++ L VP + ++ + +T L NP + +S Sbjct: 184 ERCVLTVPSTDIEKEILDL-----AAATERLNLTDALNSNPAGNLYDWRS 228
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 23.6 bits (51), Expect = 0.033 Identities = 7/22 (31%), Positives = 15/22 (68%), Gaps = 3/22 (13%) Query: 20 FTFESVR---RAINPIKGFKKM 38 + E+++ + INPI+G K++ Sbjct: 110 ISGEAIKPDIKKINPIEGAKRI 131
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 639 bits (1650), Expect = 0.0 Identities = 178/671 (26%), Positives = 304/671 (45%), Gaps = 66/671 (9%) Query: 9 RIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAAT 68 +I NIG+ AH+DAGKTT +E +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGV 128 + W++ ++N+IDTPGH+DF EV RS+ VLDGA+ + + GVQ Q+ ++ K G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNN 188 P I F+NK+D+ G + V IK +L A V Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------------------------- 154 Query: 189 ETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELSVEEIKKGIKTG 248 K VE P+ + + + + V E ++ L+EKY+ G+ L E+++ Sbjct: 155 -----KQKVELYPNMCVTNFTESEQ--WDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 249 CLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGE 308 N SL P+ GS+ N G+ L++ + + + T E Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSE 248 Query: 309 FAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKE 368 G FKI +L ++R+Y G L V S K+K ++ + + + I + Sbjct: 249 LCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDK 307 Query: 369 VYAGEICAFVG----LKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMG 424 Y+GEI L L GDT + ER+E P P++ VEP +E + Sbjct: 308 AYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLL 362 Query: 425 VALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484 AL ++++ DP R T + ++ +G++ +E+ L+ ++ VE EI +P V + E Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Query: 485 TIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKG 544 R E+ + + + + + P GSG ++ + +S G + + + AV +G Sbjct: 423 --RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 545 IQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPM 604 I+ + G L G+ V D K+ G Y+ S+ F++ + ++ + A LLEP Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539 Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664 + ++ P+EY+ D + I + I++ +P + Y +DL T G Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599 Query: 665 RGTYSMEFDHY 675 R E Y Sbjct: 600 RSVCLTELKGY 610
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 48.7 bits (116), Expect = 8e-10 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 11 ALYGGSFDPLHKAHLAIIDQALELLPFAKLIVLPAYQNPFKKPCFLDAQTRFKELERALK 70 A+Y GSFDP+ HL II++ L F ++ V +NP K+P F Q R +++ +A+ Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVL-RNPNKQPMF-SVQERLEQIAKAIA 58 Query: 71 RIDRVLLSDFE 81 + + FE Sbjct: 59 HLPNAQVDSFE 69
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 80.0 bits (197), Expect = 2e-20 Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 25/194 (12%) Query: 23 EEPKEKPKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPEPKPKPEPKPEPKPEPKVEEVK 82 E P+ EP E +P+P+P P PK P KPKP+PKP+PKP KV+E Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIP-EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Query: 83 KEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYNPGVS 142 K + K + + E + T + TS+ TS A Sbjct: 111 KRDVKPVESRPASPFENTAPARLTSSTA------------TAATSKPVTSVASGPRALSR 158 Query: 143 NEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSFVINPDGSVTDIKVVKSNTTDILNHAA 202 N+ +YP AQ IEG+V V F + PDG V +++++ + ++ Sbjct: 159 NQ------------PQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREV 206 Query: 203 LEAIKNAAYLFPKP 216 A++ Y KP Sbjct: 207 KNAMRRWRYEPGKP 220
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 46.3 bits (110), Expect = 6e-08 Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 32/291 (10%) Query: 10 ELYLLDKDNVQAYLKEHKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDL 69 ++ L D++ + + R + ++ + Y NL L + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 70 GVKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF 129 ++ + +SS Y P D ++ + YA K + S G+ Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLP 172 Query: 130 YKTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFVMWGDGTARREYLNAKDL 189 L +YG + + P + T + K ++ G +R++ D+ Sbjct: 173 ATGLRFFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDI 223 Query: 190 ARFISLAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMIAQVLDYKG 232 A I + I + V N+G+ + +Y + + L + Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283 Query: 233 AFVKDLSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 282 +P + + D + + + E ++ G+K +Y +V Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.003 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 190 KEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 247 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 248 IFNDKQFTYFKF 259 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (332), Expect = 5e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 0.001 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 144 PNDTNNEEAPKNTPLKKYAKNLSALAQDNALDPVIGREEEILRVIEILGR--RKKNNPLL 201 + K+ L +QD P++GR + + +L R + ++ Sbjct: 108 LTELIGIIGRALAEPKRRPSKLEDDSQDGM--PLVGRSAAMQEIYRVLARLMQTDLTLMI 165 Query: 202 IGEAGVGKTSIAEAL 216 GE+G GK +A AL Sbjct: 166 TGESGTGKELVARAL 180
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 76.2 bits (187), Expect = 1e-21 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGRAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + +A SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.4 bits (76), Expect = 9e-04 Identities = 30/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLTPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217