>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.034 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.9 bits (90), Expect = 2e-05 Identities = 43/234 (18%), Positives = 77/234 (32%), Gaps = 14/234 (5%) Query: 16 EELEARIGELEDENAELLREKNDLFVETS--------------GLKDANNQLRQKNDKLF 61 + L+ EL +E + + S L+ A + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 62 ITKDKLTKANTELYRERNDLAREKENLNNQLNASQKQVKELEQSQQVLKNEKAELSKEKE 121 L L + DL + E N A ++K LE + L+ +AEL K E Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 122 NLTKANTDLKTENDKLNHQVIALNKEQGSLKQERVRLQDEHGFLEKRCTNLEKENQRLTE 181 +T + L + AL + L++ + + LE E L Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 182 KLKQLESAQKSLENTNNQLRQALENSNAQLAQAEEKIATEKTELEREIARLKSL 235 + +LE A + N + ++ A+ A E + A + + + A +SL Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSL 314 Score = 35.4 bits (81), Expect = 2e-04 Identities = 49/220 (22%), Positives = 75/220 (34%), Gaps = 7/220 (3%) Query: 17 ELEARIGELEDENAELLREKNDLFVETSGLKDANNQLRQKNDKLFITKDKLTKANTELYR 76 A+I LE E A L K DL G + + K L L Sbjct: 138 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK-------IKTLEAEKAALEA 190 Query: 77 ERNDLAREKENLNNQLNASQKQVKELEQSQQVLKNEKAELSKEKENLTKANTDLKTENDK 136 + +L + E N A ++K LE + L KA+L K E +T + Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 137 LNHQVIALNKEQGSLKQERVRLQDEHGFLEKRCTNLEKENQRLTEKLKQLESAQKSLENT 196 L + AL Q L++ + + LE E L + LE + L Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 197 NNQLRQALENSNAQLAQAEEKIATEKTELEREIARLKSLE 236 LR+ L+ S Q E + + + + A +SL Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 350 Score = 33.5 bits (76), Expect = 8e-04 Identities = 43/226 (19%), Positives = 82/226 (36%) Query: 15 REELEARIGELEDENAELLREKNDLFVETSGLKDANNQLRQKNDKLFITKDKLTKANTEL 74 + ELE + + + + L E + L L + + + L Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 75 YRERNDLAREKENLNNQLNASQKQVKELEQSQQVLKNEKAELSKEKENLTKANTDLKTEN 134 E+ L + L L + + L+ EKA L EK +L + L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 135 DKLNHQVIALNKEQGSLKQERVRLQDEHGFLEKRCTNLEKENQRLTEKLKQLESAQKSLE 194 L + A + + L+ E +L++++ E +L ++ E KQLE+ + LE Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLE 371 Query: 195 NTNNQLRQALENSNAQLAQAEEKIATEKTELEREIARLKSLEGMEA 240 N + ++ L + E + LE ++L +LE + Sbjct: 372 EQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNK 417 Score = 33.1 bits (75), Expect = 0.001 Identities = 38/203 (18%), Positives = 75/203 (36%) Query: 15 REELEARIGELEDENAELLREKNDLFVETSGLKDANNQLRQKNDKLFITKDKLTKANTEL 74 + +LE + + + + L E + L+ +L + + + L Sbjct: 157 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 75 YRERNDLAREKENLNNQLNASQKQVKELEQSQQVLKNEKAELSKEKENLTKANTDLKTEN 134 E+ LA K +L L + + L+ EKA L + L KA + Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 135 DKLNHQVIALNKEQGSLKQERVRLQDEHGFLEKRCTNLEKENQRLTEKLKQLESAQKSLE 194 + ++ L E+ +L+ E+ L+ + L +L ++ E KQLE+ + LE Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLE 336 Query: 195 NTNNQLRQALENSNAQLAQAEEK 217 N + ++ L + E Sbjct: 337 EQNKISEASRQSLRRDLDASREA 359 Score = 28.1 bits (62), Expect = 0.048 Identities = 24/163 (14%), Positives = 55/163 (33%) Query: 84 EKENLNNQLNASQKQVKELEQSQQVLKNEKAELSKEKENLTKANTDLKTENDKLNHQVIA 143 + + N + + +L + + LK+ EL++E N + + ++ Sbjct: 58 RADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQE 117 Query: 144 LNKEQGSLKQERVRLQDEHGFLEKRCTNLEKENQRLTEKLKQLESAQKSLENTNNQLRQA 203 L + L++ + + LE E L + LE A + N + Sbjct: 118 LEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAK 177 Query: 204 LENSNAQLAQAEEKIATEKTELEREIARLKSLEGMEAKSDLDL 246 ++ A+ A E + A + LE + + + + Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.9 bits (69), Expect = 0.008 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 16 DELTALLSNAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEDIKENKELLEDKELSE 75 + LT +SN + +S+ K L+EL K+Q E + + LED++E + K++ E Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENE------LDQMERLEDMQEQAQANALKQIEE 234 Query: 76 LAKEELKILEIQKSDLETAIKQLLIPKDPNDD 107 L K++ + Q++ + +IK K P D+ Sbjct: 235 LNKKQAEEAVRQRAKDKISIKTDKSQKSPEDN 266
>FLAGELLIN#Flagellin signature. Length = 507 Score = 32.7 bits (74), Expect = 0.004 Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 6/205 (2%) Query: 87 TASSGTPAPSTPPAKKDETSGTPSASGSSVASQLTKDTTMVNNLKSVSVSAMNTTLSGVT 146 A +G D T + + K +T +N K A T + Sbjct: 263 KAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANV 322 Query: 147 QLSQQTAAISNLLS---GNPNLGSVISNAQGLSSAFSALESAQNTLKGYLDSSSATIGQL 203 + ++ + S G N S A + + K ++ + T Sbjct: 323 DAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAA 382 Query: 204 TNGSNAVVGALNKAINQVDMALADLATADTQKT---QAVTLATASATTTTDAINFLNALK 260 + + ++ A K + ++ + + L A++ Sbjct: 383 GDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQ 442 Query: 261 NNLTAQKDAFMNVHKNIQTAVAQAQ 285 N + N N+ +A ++ + Sbjct: 443 NRFDSAITNLGNTVTNLNSARSRIE 467
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 224 bits (571), Expect = 2e-78 Identities = 56/145 (38%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Query: 5 VESFNLDHTKVKAPYVRIADRKKGANGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 64 ++SF +DHT++ AP VR+A + GD I +D+RF PN+D + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 65 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAK---EVPAS 117 +RNH ++D SPMGC+TGFY++++ + ++ + M+DVLK + ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 118 NEKQCGWAANHTLEGAQNLARAFLD 142 NE QCG AA H+L+ A+ +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.006 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 29 LAILGVSGSGKSTLLSHLATMLKPNSGTISLLEHQDIY-ALNSKKLLELRRLK 80 + + G G GKSTL++ L + + + +D Y + EL + Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT 651
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.5 bits (76), Expect = 0.001 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 6/149 (4%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVADNVKKQENDAFNMPT 109 P ET ++ T ++ + D E+ + ++ V N Q N+ + Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTDQTQTEMKTAEETQEAQKELKV-VEHTPIIAQKESQAVAKKEISHK-KPKATPKDKEA 167 +T +TQT T E +++ KV E T + + SQ K+E S +P+A P + Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 168 HKDKDKHAVKELKVKKEAHKEVPKKANSK 196 K + + A E P K S Sbjct: 1151 PTVNIKEP--QSQTNTTADTEQPAKETSS 1177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 7e-13 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 53/271 (19%), Positives = 101/271 (37%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLVCYFD 87 L+ S +T H L + LM + L LS + +S A+ + + Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++A G + + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLVGLK-----TRSLRKKSVKKEESAFKIPFHL- 200 + ++ + + F+ L R ++ ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLVSCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWAFFG-FGATLGSLISGP 256 L+ V + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>SECA#SecA protein signature. Length = 901 Score = 26.4 bits (58), Expect = 0.040 Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query: 4 TTAKKDYTKYSEKQLVNLIHQLERKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNE 63 + + + +++VN+I+ +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQAF 72 L I +AF Sbjct: 60 LENLIPEAF 68
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 70.9 bits (173), Expect = 4e-15 Identities = 61/282 (21%), Positives = 108/282 (38%), Gaps = 19/282 (6%) Query: 168 QEEKEEVKETPQEEKPKDDETQESETPKDEEV---SKELETQEKLEIPKEETQEEVKEEI 224 E++ + +T P + + P + E E ET E V E Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 225 KEEAQEEVKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKEKTQESTE 284 K+E++ K E + Q + + ++A + + Q S +E + + T Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 285 IPQDKEIQEVVTEKTQAQELEIPKEKTQESAEALQ-ETQAHELEKQEIAETPQDVEIPQS 343 + +E +V TEKTQ E+PK +Q S + Q ET + E + +++ PQS Sbjct: 1105 TVEKEEKAKVETEKTQ----EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160 Query: 344 QEKETQETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKTPNNENDTETPKESVIKTP 403 Q T +T++ E+ ++ +PV +V + P N T P Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGN----SVVENPENTTPATT-------QP 1209 Query: 404 QEKEESAKTPKSDKTSSPLELHLNLQDLLKSLNQESLKSLLE 445 ES+ PK+ S + N++ S N S +L + Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251 Score = 62.4 bits (151), Expect = 2e-12 Identities = 42/212 (19%), Positives = 85/212 (40%), Gaps = 20/212 (9%) Query: 159 EQLLPTLDVQEEKEEVKETPQEEKPKDDETQESETPKDEEVSKELETQE----KLEIPKE 214 E + +++ + E E+ + Q E K+ + + + TQ + + Sbjct: 1035 ETTETVAENSKQESKTVEK-NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 215 ETQE-EVKEEIKEEAQEEVKEETQENKEEKQEKTQDSPSAQELEAMQ------------E 261 ETQ E KE E +E+ K ET++ +E + +Q SP ++ E +Q Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 262 LVKEIQENSNDQENKEKTQESTEIPQDKEIQEVVTEKTQAQELEIPKEKTQESAEALQET 321 +KE Q +N + E+ + T ++ + E T T +E P+ T + + + Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS 1213 Query: 322 QAHELEKQEIAETPQDVEIPQSQEKETQETQE 353 ++ K + + V P + E T + + Sbjct: 1214 ESSNKPKNRHRRSVRSV--PHNVEPATTSSND 1243 Score = 56.6 bits (136), Expect = 1e-10 Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 21/239 (8%) Query: 152 KEEPNNEEQLLPTLDVQEEKEEVKETPQEEKPKDDETQESETPKDEE--------VSKEL 203 NNEE + E ++ QES+T + E ++E+ Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 204 ETQEKLEIPKEETQEEVKEEIKEEAQEEVKEETQENKEEKQEKTQDSPSAQELEAMQELV 263 + K + EV + E + + E + EK+EK + E E QE+ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK-----VETEKTQEVP 1123 Query: 264 KEIQENSNDQENKEKTQESTEIPQDKEIQEVVTEKTQAQ----ELEIPKEKTQESAEALQ 319 K + S QE E Q E ++ + + E + E P ++T + E Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183 Query: 320 ETQAHELEKQEIAETPQDVEIPQSQEKETQETQE----DHYESIEDIPEPVMAKAMGEE 374 + E P++ +Q E+ H S+ +P V Sbjct: 1184 TESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Score = 42.0 bits (98), Expect = 5e-06 Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 11/229 (4%) Query: 142 ENLGDLEALAKEEPNNEEQLLPTLDVQEEKEEVKETPQEEKPKDDETQESETPKDEEVSK 201 E +AKE +N + T +V + E KET Q + K+ T E E E K Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET-QTTETKETATVEKEEKAKVETEK 1118 Query: 202 ELET----------QEKLEIPKEETQEEVKEEIKEEAQEEVKEETQENKEEKQEKTQDSP 251 E QE+ E + + + + + +E + E+ K S Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178 Query: 252 SAQELEAMQELVKEIQENSNDQENKEKTQESTEIPQDKEIQEVVTEKTQAQELEIPKEKT 311 Q + + N + T + T + + ++ + T Sbjct: 1179 VEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPAT 1238 Query: 312 QESAEALQETQAHELEKQEIAETPQDVEIPQSQEKETQETQEDHYESIE 360 S + A Q + H +E Sbjct: 1239 TSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLE 1287 Score = 42.0 bits (98), Expect = 5e-06 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 12/236 (5%) Query: 111 QKKLGSNASELEPRQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLDVQEE 170 + + E + N+ + E E KE E++ ++ ++ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT 1119 Query: 171 KEEVKET----PQEEKPKDDETQ-ESETPKD-----EEVSKELETQEKLEIPKEETQEEV 220 +E K T P++E+ + + Q E D +E + T E P +ET V Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 221 KEEIKEEAQEEVKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKEKTQ 280 ++ + E EN E T E + + + + N E Sbjct: 1180 EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK-NRHRRSVRSVPHNVEPAT 1238 Query: 281 ESTEIPQDKEIQEVVTEKTQAQELEIPKEKTQESAEALQETQAHELEKQEIAETPQ 336 S+ + ++ + T A L + K Q A + + + + + E+ Q Sbjct: 1239 TSSNDRSTVALCDLTSTNTNA-VLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQ 1293
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (487), Expect = 2e-63 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEVQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + +V+ S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.009 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 199 bits (507), Expect = 5e-58 Identities = 116/461 (25%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVALAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV L V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 47.4 bits (112), Expect = 1e-07 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 17/190 (8%) Query: 260 EPKKANQGAENAPTLE---EKNYQKAE-----RKLDSKEERRYLRDERKKAKATKKAMEL 311 + AEN+ EKN Q A + +KE + ++ + + + E Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 312 EE------REKEHDERDERETEGRRKALEMDKGNEKVNTKENEQEIKQ---EAIKEPDNG 362 +E +E E++E+ K E+ K +V+ K+ + E Q E +E D Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 363 NNATQQGEKQNAPKENKASKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQER 422 N + + N + + +E N ++ + + Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 423 DEKELEERRK 432 E + + + Sbjct: 1213 SESSNKPKNR 1222 Score = 46.2 bits (109), Expect = 2e-07 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 12/213 (5%) Query: 236 RIEKKEERIDTRE----NKREIKQEAIKEPKKANQGAENAPTLEEKNYQKAERKLDSKEE 291 +EK+ + +DT N + ++ + + AP +E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 292 RRYLRDERKKAKATKKAMELEEREKEHDERDERETEGRRKALEMDKGNEKV------NTK 345 + ++ + K + A E + +E + + + + E+ + + TK Sbjct: 1044 SK--QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 346 ENEQEIKQEAIKEPDNGNNATQQGEKQNAPKENKASKEENKPNSKEEKRRLKEEKKKAKA 405 E K+E K + Q +PK+ ++ + + E K+ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 406 EQRAREFEQRAREHQERDEKELEERRKALEMNK 438 + EQ A+E E+ + E N Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNS 1194
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 32.6 bits (74), Expect = 0.003 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 12/72 (16%) Query: 48 DGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYELVLIVAIVIVLVALGF-------- 99 G L E + + L + ++ L++ L L V++L+A Sbjct: 9 GSGRGL----EAMKWVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTTK 64 Query: 100 KKDYRLYQRMER 111 K + R R Sbjct: 65 GKATVAFAREAR 76
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.6 bits (64), Expect = 0.035 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 16/92 (17%) Query: 35 MAVGNN--ILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPKNPSAIEA-YATN 91 MA +L I ++ G T GA + IA I + ++ + A + Sbjct: 90 MATAPFLWVLYIGRIVA-----GIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFG 143 Query: 92 QIAVPSVPTTVEMISGILGNITSAAPKYALAL 123 +A P ++ G++G + AP +A A Sbjct: 144 MVAGP-------VLGGLMGGFSPHAPFFAAAA 168
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.003 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K K + D KE+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSVQKKATKHRGLQELNEINANPLNDNPNGNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 862 bits (2227), Expect = 0.0 Identities = 512/522 (98%), Positives = 516/522 (98%), Gaps = 1/522 (0%) Query: 1 MGQAFFKKIVNCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 MGQAFFKKIV CFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWNIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGW+IVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EETIKQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EE ++QRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQKELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQ+ELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 0.001 Identities = 41/221 (18%), Positives = 86/221 (38%), Gaps = 8/221 (3%) Query: 813 QAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKKECEKLLTPEARKL 872 + NE + E + P A E E+V S+ + E+ E T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 873 LEESKKSVKAYLDC--VSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYLDCVSRARN 930 +E+K +VKA V+Q+ +E + + + + E+AK + + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 931 EKEKKECEKLLTPEARKLLENQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKES 986 K+E + + P+A EN +K + T A+ ++ K+ ++++ V + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 987 VRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKA 1027 V V +N + + + K + SV++ Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Score = 35.8 bits (82), Expect = 0.002 Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 10/229 (4%) Query: 606 TPEAKKLLEEEAKESVKAYLDCVSQAKTEDEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 665 P ++ + + ++KT ++ ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 666 VSQAKTEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKECLKDLPKDLQKKVL-- 723 A++ E KE + T E + +++ KT E K + PK Q + + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 724 ----AKESVRVYL--DCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYLDCVSRAR 777 A+E+ + S+ A+ ++ K + + + E +V V Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE-STTVNTGNSVVENPE 1200 Query: 778 NEKEKKECEKLLTPEARKLLEESKKSVKAYLDCVSQAKNEAERKECEKL 826 N + + + K ++SV++ V A + + L Sbjct: 1201 NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 35.4 bits (81), Expect = 0.002 Identities = 34/183 (18%), Positives = 70/183 (38%), Gaps = 6/183 (3%) Query: 737 KAKNEAERKECEKLLTPEARKLLEEAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKL 796 + NE + E + P A E E+V S+ + E+ E T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 797 LEESKKSVKAYLDC--VSQAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 854 +E+K +VKA V+Q+ +E + + + + E+AK + ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 855 EKEKKECEKLLTPEARKLLEESKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEA 914 K+E + + P+A E + SQ A+ ++ K + + + E+ Sbjct: 1129 VSPKQEQSETVQPQAEPAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 915 KKS 917 Sbjct: 1187 TTV 1189 Score = 34.7 bits (79), Expect = 0.005 Identities = 38/222 (17%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 958 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARK 1016 + + E+ V + P ++ + V + ++K + ++ T + R+ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 1017 LLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSR-AR 1075 + +EAK +VKA A++ E +E + T E + ++E K V + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1076 NEKEKKECEKLLTPKARKLLENQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKK 1131 K+E + + P+A EN +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 1132 SVKAYLDCVSRARNEKEKQECEKLLTPEARKLLEEAKKSVKA 1173 +V V N + + + K ++SV++ Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Score = 33.1 bits (75), Expect = 0.013 Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 1 MNEENDKLETSKKAQQHSPQDLSNEEATEANHFEDLLKEESSDNHLDNSTETQTHFDEDK 60 EN K E+ + +ATE + +E+ N N+ + + Sbjct: 1039 TVAENSKQESKTVEKNEQ-------DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 61 LEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQ 120 +ETQT E + +KA+ + + + + QE +E Sbjct: 1092 TKETQTTETKETATVEKE----------EKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 121 ENNEYQEETQTGLIDDETSKKAQQHSPQDLSNEEATEVNHFEDLLKEESSDNHLDNPTES 180 + +E T I + S+ + + E ++ V E + E ++ N ++ E+ Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV---EQPVTESTTVNTGNSVVEN 1198 Query: 181 SDNHLDNSTESSDN 194 +N +T+ + N Sbjct: 1199 PENTTPATTQPTVN 1212 Score = 32.7 bits (74), Expect = 0.016 Identities = 43/260 (16%), Positives = 88/260 (33%), Gaps = 25/260 (9%) Query: 1142 RARNEKEKQECEKLLTPEARKLLEEAKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKL 1201 + NE+ + E + P A E ++V S+ + E+ E T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 1202 LEEAKESLKAYKDCLSQARNETERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNE 1261 +EAK ++KA A++ +E + + T E + ++E +A+ E Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE-------------KAKVE 1115 Query: 1262 KEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDGL-----SDEE 1316 EK + +T + +Q++ + ++ + A ND +K E+ Sbjct: 1116 TEKTQEVPKVTSQV-----SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 1317 KLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRAQNKQNQLSKTERLHQ 1376 K E+ V + + +N Q N + NK + Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230 Query: 1377 ASECLDNLDDPTDQEAIEQC 1396 D+ + C Sbjct: 1231 PHNVEPATTSSNDRSTVALC 1250 Score = 32.3 bits (73), Expect = 0.023 Identities = 41/246 (16%), Positives = 73/246 (29%), Gaps = 16/246 (6%) Query: 1073 RARNEKEKKECEKLLTPKARKLLENQALDCLKNAKTEA---EKKRCVKDLPKDLQKKVL- 1128 + NE+ + E + P A +N+K E+ EK ++V Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 1129 -AKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLEEAKKSVKA--YLDCVSRARNEK 1185 AK +VKA A++ E +E + T E + +E K V+ + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 1186 EKQECEKLLTPEARKLLEEAKESLKAYKDCLSQARNETE---RRACEKLLTPEARKLLEQ 1242 KQE + + P+A E + +TE + + P Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 1243 EVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDR 1302 V+ + E R+ + + A NDR Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA------TTSSNDR 1244 Query: 1303 AAIMKC 1308 + + C Sbjct: 1245 STVALC 1250 Score = 32.3 bits (73), Expect = 0.023 Identities = 42/259 (16%), Positives = 85/259 (32%), Gaps = 13/259 (5%) Query: 522 RARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 579 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 580 ESLKAYKDCTSQAKTEDEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEDEKKE 639 E+ K T + E ++ T E K+ E +E K E EK + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV----------ETEKTQ 1120 Query: 640 CEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEDEKKECEKLLTPEAKKLLEQQALDCLK 699 +T + K E+++ T + K+ + T + ++ ++ Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE 1180 Query: 700 NAKTDEERKECLKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLL 759 T+ + ++ + A V + +K KN R E Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Query: 760 EEAKESVKAYLDCVSRARN 778 + +V A D S N Sbjct: 1241 SNDRSTV-ALCDLTSTNTN 1258
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 27.3 bits (60), Expect = 0.032 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 128 NKSVYQLVEMAIGAYNGG-MKHDPNGAYVKKFRCIYSQVRYNE 169 N+S Y VE Y G + GAYV ++ ++ ++ Y++ Sbjct: 451 NRSEY--VETTSTEYTSGKINLSHQGAYVAQYEILWDEINYDD 491
>PF03944#delta endotoxin Length = 633 Score = 32.7 bits (74), Expect = 0.002 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMSDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQKYASQFLDLVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 280 bits (719), Expect = 3e-97 Identities = 115/246 (46%), Positives = 164/246 (66%), Gaps = 3/246 (1%) Query: 53 ILRFFIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSL 112 + R ++ LI PL A + LP + S P + + + +T L P++ Sbjct: 1 MRRLLSVAPVLLWLITPL--AFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAI 57 Query: 113 ILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYM 172 +L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ Sbjct: 58 LLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFS 117 Query: 173 DKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMIS 232 ++KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ S Sbjct: 118 EEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTS 177 Query: 233 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 292 ELKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL Sbjct: 178 ELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVG 237 Query: 293 NLVASF 298 +L SF Sbjct: 238 SLAQSF 243
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.014 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIARKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.5 bits (95), Expect = 1e-05 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%) Query: 211 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 264 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 HMLNTPFPYAEEVKIKYGDLSFESGAETPSQSVQIPTTGSDGHESHIVPLSEIQTIMRER 324 + AE +K + G S G E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELARTHFTNYPVRLA 377 + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVA 318
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.6 bits (63), Expect = 0.016 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLSKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.032 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 5/117 (4%) Query: 114 TATLNANTENIKSEVKKLENQIIETTTKLLTSYQIFLNQARDNANNQITENKTQSLEAIK 173 + T EN K E K +E + T + ++ + N T QS K Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 174 EAKTNANNEINEKQTQAITNINEAKTTANHEINTSKTQSLEALKQEKNQATSEINEA 230 E +T K+T + +AK K S + KQE+++ E Sbjct: 1094 ETQTTE-----TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEP 1145
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 561 bits (1447), Expect = 0.0 Identities = 129/610 (21%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMVDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFARYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ + A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAQINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVIKESENKGGLNQIYFQSDDFKLTNITDK-LNQGKVGALLNVY 304 + +G++++ GS L S + + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSANHHIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQ-----DNNT 415 + F + + NT K +T + + I+ + + Q N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDDGTNFMGALKLNPFFQGDDASNIS 475 D + + + + D M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMLNLIKFQSGYAANAKVISAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (373), Expect = 7e-46 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 31.6 bits (71), Expect = 0.003 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 11/139 (7%) Query: 32 KEAEKILLDLGKKNEQVID--LNLEDLPSEKKNE-KIEKVTEKQGDF---LEPKEEPKEE 85 +EA K++ D N++++ LN ++ KN ++V + Q D L +E ++E Sbjct: 568 QEANKLIKDFLSSNKELVGKTLNFNKAVADAKNTGNYDEVKKAQKDLEKSLRKREHLEKE 627 Query: 86 PEESLEDIFSSLNDFQEKTDTNAQKDE----QKNEQEEEQRRLKEQQRLRKNQKN-QEML 140 E+ LE + N + K N+QKDE E + R + Q L+ ++ + L Sbjct: 628 VEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKL 687 Query: 141 KGLQQNLDQFAQKLESVKS 159 + + +NL F + + K+ Sbjct: 688 ENVNKNLKDFDKSFDEFKN 706
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 70 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 126 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.2 bits (73), Expect = 0.002 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 70 EPEVQILKDLKPDFIVVVAYGKILPKEVLTIAP 102 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 24/170 (14%), Positives = 60/170 (35%), Gaps = 18/170 (10%) Query: 51 RAQYHTHLKMLEQKEEALKERAKEQQAQFDDAVKQASVLALQDERAKIIEEARKNAFLEQ 110 + Q+ T QKE L ++ E+ + ++ ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLDLEREK 170 LE + + E EL ++++E+++ E A+ + + + E Sbjct: 252 HAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVTQ-------LFKNEI 300 Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220 ++K + +L + + +A +S +VQ+L + Sbjct: 301 LDK--LRQTTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>PF05844#YopD protein Length = 295 Score = 25.0 bits (54), Expect = 0.035 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSE 74 KQK E Sbjct: 256 KQKVE 260
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 48.8 bits (116), Expect = 4e-10 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 1 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNDSLFGAKGPASFMAKLTMFLG 58 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 LLFVINTIALGYFYNKEYGKSILD 82 LF I ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 3e-23 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 37.3 bits (86), Expect = 3e-04 Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 30/193 (15%) Query: 139 NTAQTKAANDPMYASTPFSNGSDSSAYDNNPNSPSNNAINGKDGANGGNGYGINGNDEIN 198 N+AQ PF+ G ++ N N+ ++ I G ++ Sbjct: 368 NSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIR----VGGFKASLTTNAAHLH 423 Query: 199 GSSGSNGNNSNNNAIGSGIDTDGVLG---VDGVNGSNSSSGGS-VGGYENNFT-NHGSTN 253 G G N +N A G + + + G VDG N+ GG + G NF G+ Sbjct: 424 --IGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDT 481 Query: 254 NNTGGYDNFNNGSSSGGSL----------------GNGGLFPIPFGNGDTNNSNNPANTT 297 N G FNN S G + GNGG + F +G TN N T Sbjct: 482 KN--GTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDF-SGVTNKVNINKLIT 538 Query: 298 SPTNGSSSNNATN 310 + TN + N N Sbjct: 539 ASTNVAVKNFNIN 551
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 0.001 Identities = 33/193 (17%), Positives = 72/193 (37%), Gaps = 17/193 (8%) Query: 173 SAKLEQQELERKEAELESKALQDYEENQIQRAEEISLTEHENELAKQELE-----KYAIE 227 ++K E + +E+ E + Q+ E + ++ + T+ NE+A+ E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ-TNEVAQSGSETKETQTTETK 1101 Query: 228 SENKALEQNMMKAKTPDTLYEQQVAQEQNKEEERSDKQDLELEALRDNNTKQGLDDENLE 287 ++ K +T T +V + + ++E+S+ + E R+N+ + + Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEP--- 1158 Query: 288 LLESLQVIRDETSKVTNFLRANETIELLRPTGENTTSKIASLALEENNKLNEKETNTQEQ 347 +S +T + +N + T NT + + N N TQ Sbjct: 1159 --QSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSV------VENPENTTPATTQPT 1210 Query: 348 NTEKEQEKPKIGN 360 + KPK + Sbjct: 1211 VNSESSNKPKNRH 1223
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 474 bits (1221), Expect = e-171 Identities = 179/347 (51%), Positives = 248/347 (71%), Gaps = 2/347 (0%) Query: 2 IFSKLIGLFSHDIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEA 61 + K G+FS+D++IDLGTANT++ VKGQGI++NEPS+VA+R S + AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKS-VAAVGHDA 59 Query: 62 KEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKAHKRKTW-IRPRIMVCVPYGLT 120 K+MLG+TP +I AIRPMKDGVIAD+ +T KM+++FI++ H PR++VCVP G T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 SVERNAVKESALSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLG 180 VER A++ESA AGAREVFLIEEPMAAAIGAGLPV E GS++VDIGGGTTE+ VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLDPPLTMEVSGR 240 G+V S S+R+ GD+ D++I+ Y+R+ + LIGE T E IK EIG A D +EV GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 DQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGAL 300 + G+ L+S+++ EA+++ + I SA+ LE+ P+LA DI + G+VLTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 IKGLDKYLSDMVKLPVYVGDEPLLAVAKGTGEAIQDLDLLSRVGFSE 347 ++ LD+ L + +PV V ++PL VA+G G+A++ +D+ FSE Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSE 346
>FLAGELLIN#Flagellin signature. Length = 507 Score = 30.4 bits (68), Expect = 0.007 Identities = 13/34 (38%), Positives = 23/34 (67%) Query: 177 LASVDDLIANLDSRKTQFDSLINNANNLVSNVNN 210 L+ VD + ++L + + +FDS I N N V+N+N+ Sbjct: 428 LSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNS 461
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 5e-78 Identities = 62/147 (42%), Positives = 94/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLKMMQLATKSFT 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL + A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (332), Expect = 5e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.0 bits (64), Expect = 0.026 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 13/80 (16%) Query: 186 NNKPLKEEKEETKEKEEETITIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCLGICSKKS 245 N + ++EEK++ + + + NA+K + + + Y ++ + K+S Sbjct: 364 NKEKIREEKQKIILDQAKALETQYVHNALK--RNPVPRNYNYYQAPE----------KRS 411 Query: 246 KLSLMPKEIFNDKQFTYFKF 265 K +MP EIF+D FTYF F Sbjct: 412 K-HIMPSEIFDDGTFTYFGF 430
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 30.3 bits (68), Expect = 0.018 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%) Query: 272 ALFEEAANEPKENVSLNQTPVFAKESANNLVFSHKVSAL---LGVENLAIIDTKDALLIA 328 +LF P +V++ P A + H VS+ L N+ ++D LL Sbjct: 162 SLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQ 221 Query: 329 HKDKANDLKA----LVSEVE 344 DL ++VE Sbjct: 222 SNTSGRDLNDAQLKFANDVE 241
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 86.4 bits (214), Expect = 5e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYRETYSL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.9 bits (122), Expect = 2e-09 Identities = 51/346 (14%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDSGVKKA 102 D++ + + R + ++ + Y NL L + + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 359 bits (923), Expect = e-126 Identities = 118/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVATALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.027 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.009 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 151 bits (383), Expect = 5e-41 Identities = 103/437 (23%), Positives = 177/437 (40%), Gaps = 85/437 (19%) Query: 11 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 67 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 68 HLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 127 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 128 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS----------------AK 171 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 172 VKLGIKDLLEKIITTIP------------------------------------------- 188 V G DLLEK ++ Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 189 --APSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 246 + + + L ++ + LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 247 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 303 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 304 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 363 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 364 EREFGLNLIATAPTVVY 380 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 407 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 466 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 467 LKSCTKGYASFDYEP 481 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.010 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.1 bits (91), Expect = 3e-05 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 33/182 (18%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EE 212 ++ Sbjct: 190 KK 191
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.007 Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 26/197 (13%) Query: 169 FSPKKEGFENTPSDAQKKETNNDKEKENLKENPIDENHKPPNE--ESFLAIPTPYNTTLN 226 ++P+ E N D T N+ + + +E +E A TP TT Sbjct: 981 YNPEVEK-RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 227 DSE---PQEGLVQISSHPPTHYTI----YPKKNRFDDLTNPTNPPLKEPKQETKEREPTL 279 +E + V+ + T T K+ + + N + + ETKE + T Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 280 TKETPTTPKSIMPAPAPNTENDNKTQNHKTPNHPKKEESPQENAQEEMIEETIKENLKEE 339 TKET T K E K + KT +E P+ +Q +E + + Sbjct: 1100 TKETATVEK----------EEKAKVETEKT------QEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 340 EKEIQNAPSFSPLTPTS 356 E +N P+ + P S Sbjct: 1144 EPARENDPTVNIKEPQS 1160
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.3 bits (66), Expect = 0.008 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCGSLFLSSPLLGMIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL + AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 52.3 bits (125), Expect = 4e-10 Identities = 24/52 (46%), Positives = 27/52 (51%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 P P P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 46.1 bits (109), Expect = 5e-08 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 142 A Q PP P P P P P P E P KPKPKP+PK K V+ Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVK 104 Query: 143 KVEEKKVVEEKKEE 156 KV+E+ + K E Sbjct: 105 KVQEQPKRDVKPVE 118 Score = 45.4 bits (107), Expect = 1e-07 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK-KPNHKHKALKKV 141 P P P P P P PPK +PKPKPKP+PK + + + V Sbjct: 55 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 114 Query: 142 EKVEE 146 + VE Sbjct: 115 KPVES 119 Score = 39.6 bits (92), Expect = 8e-06 Identities = 17/50 (34%), Positives = 22/50 (44%) Query: 81 PGAPKPTLAGPQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 130 P P+ P P P P PKP KPKP+P K + +PK+ Sbjct: 63 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 38.4 bits (89), Expect = 2e-05 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 34/214 (15%) Query: 101 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVV 160 P PP +P +P EP+P+P+P P+ P K+ V EK + K + K V Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------KEAPVVIEKPKPKPKPKPKPVK 104 Query: 161 EQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRKENNKGLDNQTRRDIDELYGEEFGD 220 KV+++ + KPV E P N T + Sbjct: 105 --KVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSKPVTS 148 Query: 221 LGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKIIIGS 280 + + + RN + YP A L +G V+F + P+G + +++I+ Sbjct: 149 VASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAK 197 Query: 281 EYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 314 M + ++ + +P + ++ I + Sbjct: 198 PANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 35.0 bits (80), Expect = 3e-04 Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 91 PQKPPTPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 132 P+ P P P P PKP K + +PK +P + Sbjct: 79 PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 1e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.4 bits (60), Expect = 0.043 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 22 NQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 76 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 77 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 128 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.019 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDEGLTTIDDL-----QSLKAQGNLSEY--DILDIQ 255 LAR+ + K+ + + L + + + ++A L Y + I+ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 7e-10 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Query: 27 NVKAVQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQEKQAQSDSTEQQLIFAKKQ 86 K ++ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKTGGAVDKNTLESYEFN 108 RY +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 29.8 bits (67), Expect = 0.010 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKTGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 901 bits (2329), Expect = 0.0 Identities = 285/1038 (27%), Positives = 518/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPVT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMDKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESHYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F +HYT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHQLGQFELMSALRKELKS 631 + + E FT + G QN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLDTINLSEVSLLGGGGDSSPFQTFVFSHSQEAVDKSVENLKKFLLENPELKGKI 691 + + + N+ + L G ++ F + + D + + L + + Sbjct: 657 IRDGFVI-PFNMPAIVEL---GTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLVALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 283 bits (725), Expect = 3e-79 Identities = 109/397 (27%), Positives = 182/397 (45%), Gaps = 14/397 (3%) Query: 2797 AGNNSILWLNELFVAKGGNPLFAPYYLQDTPTEHIVTLMKDITSALGMLSKPNLKNNSTD 2856 +G L L + + +A + T I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2857 ALQLSTYTQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKL 2916 L LS SRL LS + F++RL +LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2917 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITN 2971 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + N Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2972 SRSNNVDMGLYARAFIKKSELTFSVNETWGANKTQISSNDTLLSMINQSYKYSTWTTNAR 3031 S +NN + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ R Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3032 VNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLDGVMNNALYNQFKANADPSKKSVLTIDL 3091 +YGYDF F +++LKP +G+ Y ++G T + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3092 ALENRHYFNTNSYFYAIGGFGRDLLIRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGG 3151 +E R+Y+ SYFY G ++ + V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3152 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3188 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 40.0 bits (93), Expect = 2e-04 Identities = 85/475 (17%), Positives = 156/475 (32%), Gaps = 101/475 (21%) Query: 82 SVNENNNNKSYYISPLRTWAGGNRSFTQNYNNSQLYIGTKNASSTPNHSSVWFGEKGYIG 141 V+ N +Y +S L + GG+ N + L +G N +S ++ K Sbjct: 133 EVDMQNAVGTYNLSGLINFTGGD--LDVNMQKATLRLGQFNGNSFTSY-------KDSAD 183 Query: 142 FITGV-FKAKDIFITGAVGSGNEWKTGGG-----AILVFESSNGLSANGAYFQNNRAGTQ 195 T V F AK+I I + N +G G +L ++S G+++ + Sbjct: 184 RTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRE---NAEISLYD 240 Query: 196 NSWINLISNHSVNLTNTDFGNQTPNGGF-----------NVMGRKITYNGGTINGGNFGF 244 + +NL SN + N G G + V G ++ +N T+ N Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTG-EVNFNHLTVGDHNAAQ 299 Query: 245 DNVDSNGATTISGVTFNNNGALTY----KGGNGIGGSITFTNSNINHYKLNLNANSVTFN 300 + ++ T I + + L +GG + +N+ N+ K + +S + Sbjct: 300 AGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNS 359 Query: 301 NSALGSMPN------------------GNANTIGNAYILNAN------NITFNNLTFNGG 336 N+ + + PN G NT+ N +N N F Sbjct: 360 NTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNA 419 Query: 337 WFVFNRSDAHVNFQGTTTINNPTSPFVNMTGKVTINPNAIFNIQ--NYTPSIGSAYTLFS 394 + +N + + N+TG +T++ N Q Y + SA F Sbjct: 420 AHLHIGKGG-INLSNQAS--GRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFK 476 Query: 395 M----KNGSITYND------------------------VDNLWNIIRL----------KN 416 KNG+ T+N+ + +N + K Sbjct: 477 AGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKL 536 Query: 417 TQATKDNSKNATSNNNTHTYYVTYNLGGTLYNFRQIFSPNSIVLQSVYYGTNNIY 471 A+ + + + N ++G + I S + I + GT +IY Sbjct: 537 ITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591 Score = 33.5 bits (76), Expect = 0.019 Identities = 40/266 (15%), Positives = 85/266 (31%), Gaps = 22/266 (8%) Query: 546 GGYEGVNWGKTGYITGTFTADRVYITGNMMSGNGAQTGGGATLNFVGAT-EINIAGADFK 604 GG++ N + ++ + +M + G G NF G ++N+ A Sbjct: 111 GGWDWGNAARHYWVKDGQWNK---LEVDMQNAVGTYNLSGLI-NFTGGDLDVNMQKATL- 165 Query: 605 NLKTTSQNSYMTFMALGD-----SFGSGKINVSQS-DFYDWTGGGYDFTGNGVFDSVNFN 658 L + NS+ ++ D F + I + + + G G + ++ + Sbjct: 166 RLGQFNGNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQAS 225 Query: 659 KAYYKFQGAE-NSYHFKNTNFLAGNFKFQGKTTIER----SVLSDASYTFDGANNTFNED 713 + + AE + Y N + + K G + R SY+ + E Sbjct: 226 EGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEV 285 Query: 714 KFNGGSFNFNHAEQTDAFNNNSFNGGSFSFNAKQVDFNYNSFNGGVFNF---NNTPKVSF 770 FN + ++A Q +N + G+ + N + G + + + Sbjct: 286 NFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGGYKDKPNDKPSNTTQ 344 Query: 771 TDDTFNVNNQFKING-AQTTFTFNKG 795 + + + N Q N Sbjct: 345 NNAKNDKQESSQNNSNTQVINPPNSA 370
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 122 bits (309), Expect = 6e-37 Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 2/117 (1%) Query: 1 MRNIEARK-EKGDKEAKLAFEMCAYRIKKYIGAYMVVLKKVDAIIFTGGLGENYSALRES 59 R++E + GDK A+LA + AYR+KK IG+Y + VD I+FT G+GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 60 VCEGLENLGIALHKPTNDNPGNALVNLSQPNTKIQVLRIPTDEELEIALQTKKVLEK 116 + +GLE LG L K N G + +S ++K+ V+ +PT+EE IA T+K++E Sbjct: 343 ILDGLEFLGFKLDKEKNKVRGEEAI-ISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 353 bits (908), Expect = e-124 Identities = 139/274 (50%), Positives = 190/274 (69%), Gaps = 6/274 (2%) Query: 1 MEILVLNLGSSSIKFKLFDMQENKPLASGLAERIGEEIGQLKIKSHLHHNEQELKEKLVI 60 M+ILV+N GSSS+K++L + ++ LA GLAERIG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMREIGNLS 118 KDH + ++ + L G+IKD ++IDA+GHRVV GG+ F + VL+ + V++ I + Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 119 ILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHATMPSYAYMYALPYELYEKYQIRRY 178 LAPLHNPAN+ GI+ + P +P +AVFDTAFH TMP YAY+Y +PYE Y KY+IR+Y Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 179 GFHGTSHHYVAKEAAKFLNIAYEEFNAISLHLGNGSSVAAIQNGKSVDTSMGLTPLEGLI 238 GFHGTSH YV++ AA+ LN E I+ HLGNGSS+AA++NGKS+DTSMG TPLEGL Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 239 MGTRCGDIDPTVVEYTAQCANKSLEEVMKMLNHE 272 MGTR G IDP+++ Y + N S EEV+ +LN + Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKK 270
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.7 bits (105), Expect = 9e-07 Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 8/224 (3%) Query: 287 KKPEKTPIHAKTQTTAPSATPENAPKLALKTPPLMPLIGANPPNDNIPTPLEKEEKTKEV 346 Q PS N + P+ P A TP E E E Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA--------TPSETTETVAEN 1043 Query: 347 SDNKEKTKESSNSAQSAQNTQASDKTSDNKSIAPKETIKHFTQQLKQEIQEYKPPMSKIS 406 S + KT E + + Q + + KS T + Q E +E + +K + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 407 MDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFS 466 + +E KVE + + V +T + + + + + + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 467 QDSSKEQPKEQLRELFKEQESSPLKENALKSYQENTNHENQETS 510 + EQP ++ ++ + N S EN + T+ Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 36.2 bits (83), Expect = 4e-04 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 7/218 (3%) Query: 42 KISKDKTAPKESLNHNALKATPKDAKEDAKALEKTPTPNHQHAQNLAKNQQAPTLKDWLN 101 ++++ + KE+ + + +E AK + + ++ Q+ Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 102 HPKTHPTAKHEAQHETHEANETNPKT-PNETLSKNEKKPNEVTSNAHQINLPNKNPITPN 160 P + + N T P + S N ++P ++ + N +NP Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 161 HANKTPTTPTHSAKEPKTLKDIQTLSQKHDLNASNIQATAPLEKKETPLSASDQLALKTT 220 A PT + S+ +PK S H++ AT + T A L T Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP----ATTSSNDRST--VALCDLTSTNT 1257 Query: 221 QTPTSHTLAKNDAKNTANLSSVLQSLEKKESQNKEHAN 258 S AK +V Q + + E N+ N Sbjct: 1258 NAVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYN 1295 Score = 33.1 bits (75), Expect = 0.003 Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 12/237 (5%) Query: 176 PKTLKDIQTLSQKHDLNASNIQATAPLEKKET-----PLSASDQLALKTTQTPTSHTLAK 230 P+ K QT+ + +NIQA P A T + T+ T+A+ Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 231 NDAKNTANLSSVLQSLEKKESQNKEHANPPNNEKKTPPLKEALQMNAIKRDKTLSKKKPE 290 N + + + Q + +QN+E A + K + + + +T + + E Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 291 KTPIHAKTQTTAPSATPENAPKLALKTPP-------LMPLIGANPPNDNIPTPLEKEEKT 343 + + + + + PK+ + P + P ND E + +T Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 344 KEVSDNKEKTKESSNSAQSAQNTQASDKTSDNKSIAPKETIKHFTQQLKQEIQEYKP 400 +D ++ KE+S++ + + T ++ P+ T TQ KP Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Score = 30.4 bits (68), Expect = 0.022 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 12/248 (4%) Query: 40 NQKISKDKTAPKESLNHNALKATPKDAKEDAKALEKTPTPNHQHA------QNLAKNQQA 93 N++I++ AP T + E++K KT N Q A + Sbjct: 1014 NEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAK 1073 Query: 94 PTLKDWLNHPKTHPTAKHEAQHETHEANETNPKTPNETLSKNEKKPNEVTSNAHQINLPN 153 +K + + + +T E ET E +K EV Q++ Sbjct: 1074 SNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQ 1133 Query: 154 KNP--ITPNHANKTPTTPTHSAKEPKTLKDIQ-TLSQKHDLNASNIQATAPLEKKETPLS 210 + + P PT + KEP++ + Q +SN++ + T ++ Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE---QPVTESTTVN 1190 Query: 211 ASDQLALKTTQTPTSHTLAKNDAKNTANLSSVLQSLEKKESQNKEHANPPNNEKKTPPLK 270 + + T + T +++++ + + + N E A +N++ T L Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250 Query: 271 EALQMNAI 278 + N Sbjct: 1251 DLTSTNTN 1258
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 32.8 bits (75), Expect = 7e-04 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 136 GVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKKIEKSFT 179 G P+ L ++ Q+ + LM A A+ I + Sbjct: 132 GFQPDRVLTVWQQL-RAMANVGEMTLMSHFAEAEHPDGISGAMA 174
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 1e-12 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 181 GEVLFLDDSRTARKTLKNHLSKLGFSITEAVDGEDGLNKLEMLFKKYGDNLRKHLKFIIS 240 +L DD R L LS+ G+ + + + +++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----------AGDGDLVVT 53 Query: 241 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKF 299 DV MP + + L +++K +PV+ S+ +A +A E GA YL K FD + Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 300 TEEISKILD 308 I + L Sbjct: 112 IGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 5e-10 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 682 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 741 +L DD + R ++ + L G + +N + GD D ++ D+ MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDENAF 63 Query: 742 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 801 ++K +LP++ ++++ T ++ E G +Y+ KP+ L ++ R++ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 802 E 802 Sbjct: 122 P 122
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 28.7 bits (64), Expect = 0.013 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 22/119 (18%) Query: 13 RFCFDEKVAHVFDDMLERSIPYYHEMLDLGAYFIAQNLKENTNAKPLIYDLGCSTGNFFI 72 RF K D + E+ I H + L A F+ +L ++ I +GC TG + Sbjct: 38 RFTAPNK-----DILSEKGI---HTLEHLYAGFMRNHLNGDSVEIIDISPMGCRTGFYMS 89 Query: 73 VLN----QQI-------QQDIELVGIDNSMPMLKKAQ---EKLKDFKNARFECMDFLEV 117 ++ QQ+ +D+ V N +P L + Q + A+ + LEV Sbjct: 90 LIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEV 148
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 427 bits (1100), Expect = e-147 Identities = 165/581 (28%), Positives = 278/581 (47%), Gaps = 81/581 (13%) Query: 10 RLILAIALSFLFITLYSYFFQKPNKTTTETTKQETTNNHTTTSPNAPNAQHFSVTQTIPQ 69 R +L IAL F+ ++ Q + + + T TTT+ + Q Q Sbjct: 5 RNLLVIALLFVSFMIW----QAWEQDKNPQPQAQQTTQTTTTAAGSAADQG---VPASGQ 57 Query: 70 ENLLSTISFEHARIEIDFLG-RIKQVYLKDKKYLTPKQKGFLEHVG--HLFSSKEN---- 122 L+ ++ + + I+ G ++Q L P L L + Sbjct: 58 GKLI-SVKTDVLDLTINTRGGDVEQALL-------PAYPKELNSTQPFQLLETSPQFIYQ 109 Query: 123 AQPPL--KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDL 178 AQ L ++ P A+ +PL +N A G NE V D Sbjct: 110 AQSGLTGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDA 156 Query: 179 GALSIIKTLTFYDDLHYDLKIAFKSPNN------------------LIPSYVITNGYRPV 220 + KT Y + + + N L P + + Sbjct: 157 AGNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL 215 Query: 221 ADLDSYTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDSQ 277 +TF G D+K EK + D + + S +++ + +YF T + Sbjct: 216 -----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-D 269 Query: 278 GFEALIDSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDV 326 G + +G N + I K++ N ++GP+ + A++P L Sbjct: 270 GTNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLT 327 Query: 327 IEYGLITFFAKGVFVLLDYLYQFVGNWGWAIIFLTIIVRIILYPLSYKGMVSMQKLKELA 386 ++YG + F ++ +F LL +++ FVGNWG++II +T IVR I+YPL+ SM K++ L Sbjct: 328 VDYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQ 387 Query: 387 PKMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELK 446 PK++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ Sbjct: 388 PKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELR 447 Query: 447 SSEWILWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKFLPLLFTIFLI 506 + + LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI F+P++FT+F + Sbjct: 448 QAPFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFL 507 Query: 507 TFPAGLVLYWTTNNILSVLQQLIINKVLENKKRMHAQNKKE 547 FP+GLVLY+ +N+++++QQ +I + LE K+ +H++ KK+ Sbjct: 508 WFPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.009 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Query: 56 VKESVKEVKEESVKETNTKEIHQNNIEEKKQKLETETPQEE-KITPKPSKKNPKEES 111 KE + KET T E +E+K K+ETE QE K+T + S K + E+ Sbjct: 1088 SGSETKETQTTETKETATVE------KEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 34.1 bits (78), Expect = 0.001 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESADEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDALN 318 + KV +IDT G + E+ R SL L D + + ++ + L AL Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 36.5 bits (84), Expect = 2e-04 Identities = 14/25 (56%), Positives = 15/25 (60%) Query: 49 EQTIATTQEKPKPKPKPKPKPKPKP 73 + EKPKPKPKPKPKP K Sbjct: 82 PKEAPVVIEKPKPKPKPKPKPVKKV 106 Score = 36.1 bits (83), Expect = 3e-04 Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 57 EKPKPKPKPKPKPKPKPITPQ 77 KPKPKPKPKPKP + Sbjct: 88 VIEKPKPKPKPKPKPVKKVQE 108 Score = 35.3 bits (81), Expect = 6e-04 Identities = 12/28 (42%), Positives = 12/28 (42%) Query: 46 QTQEQTIATTQEKPKPKPKPKPKPKPKP 73 KPKPKPKPKPKP Sbjct: 75 PEPIPEPPKEAPVVIEKPKPKPKPKPKP 102 Score = 32.7 bits (74), Expect = 0.004 Identities = 11/17 (64%), Positives = 13/17 (76%) Query: 56 QEKPKPKPKPKPKPKPK 72 + KPKPKPKPKP K + Sbjct: 91 KPKPKPKPKPKPVKKVQ 107 Score = 31.1 bits (70), Expect = 0.013 Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 58 KPKPKPKPKPKPKPKP 73 KPKPKPKP K + +P Sbjct: 95 KPKPKPKPVKKVQEQP 110
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 33.5 bits (76), Expect = 0.001 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 6/97 (6%) Query: 155 SKNMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDAEIKNAL 214 + N D L P + +A + G E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595 Query: 215 ISAYAR-VLTPSDEEKLYQ-----IKNEVFTENANGI 245 A + T D+ KL I+++ F + N I Sbjct: 596 AELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNI 632
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175