>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 382 bits (982), Expect = e-133 Identities = 174/406 (42%), Positives = 266/406 (65%), Gaps = 2/406 (0%) Query: 1 MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALG 60 M + ++A+DA G+ +G EADSAR AR LR +GL PL V+ Q+ + S L+L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 61 R--KLSQREQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSL 118 R +LS + A+LTRQLA+L+ A +PL+EAL + +Q+E+ ++ +LMAA+R++V+ GHSL Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 119 ANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVT 178 A+A+ P F +Y A+VAAGE +G L VL+RLADY E+R ++ +I A YP ++T Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 179 VIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYL 238 V+A +V+ LLS VVP+VV F KQ LP+ T V+M +SD VR + +L+ + A Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240 Query: 239 VKATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGET 298 + L ++ R++F R LL PL G++ RG NT R+A TL IL A+ VP+L+A++ +G+ Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 299 LSNRAMRGNIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEG 358 +SN R + A VREG +L +AL FPP++ H+I SGE +G++ +ML+RAA+ Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 359 ESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404 + RE + L EPLL+++M +VL IVLA++ PI++LN ++ Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 188 bits (480), Expect = 6e-65 Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 3/140 (2%) Query: 10 QAARRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRL 69 +A +QRGFTL+EIMVV+ I+G+LA+L+VP +M ++A + A DI + AL +Y+L Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61 Query: 70 DNGRYPTQDQGLNALIQKPTTDPIPNNWKDGGYLERLPNDPWGNSYKYLNPGVHGEIDVF 129 DN YPT +QGL +L++ PT P+ N+ GY++RLP DPWGN Y +NPG HG D+ Sbjct: 62 DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121 Query: 130 SYGADGKEGGESNDSDIGSW 149 S G DG+ G E DI +W Sbjct: 122 SAGPDGEMGTE---DDITNW 138
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 50.7 bits (121), Expect = 1e-10 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 15/101 (14%) Query: 11 RARGFTLLEMLVVLVIAGILVSVASLTLRRNPRTDLREEAQRIALLFETAGDEAQVRARP 70 R RGFTLLEM+++L++ G+ + L + + R + Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61 Query: 71 IAWRATEHGFRF---------------DIRTGDGWRPLRDD 96 ++F D +G W PLR Sbjct: 62 FGVSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAG 102
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 30.2 bits (68), Expect = 0.001 Identities = 10/26 (38%), Positives = 18/26 (69%) Query: 8 RSPARSRGFTMIEVLVALAIIAVALA 33 R+ + RGFT++E++V + II V + Sbjct: 2 RATDKQRGFTLLEIMVVIVIIGVLAS 27
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 33.3 bits (76), Expect = 3e-04 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 33 RGFTLIEMMIAITILAVIA-ILSWRGLDQIIRGREKVAAAMEDERVFAQMFDQMRIDARR 91 RGFTL+E+M+ I I+ V+A ++ + + ++ A+ D D ++D Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQK--AVSDIVALENALDMYKLDNHH 65 Query: 92 AATDDEAGQPAV 103 T ++ + V Sbjct: 66 YPTTNQGLESLV 77
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 32.0 bits (72), Expect = 0.007 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 495 PAGAAAPAAMPAAAVAPAAMPAAAVAPAARPAA---------VVAAAGPDTQARRPRATP 545 P A AP A P V+PA PA AP P + A PDT +P P Sbjct: 317 PGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDG-QPGTRP 375 Query: 546 AAPA 549 +PA Sbjct: 376 DSPA 379
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 122 bits (307), Expect = 3e-32 Identities = 85/404 (21%), Positives = 162/404 (40%), Gaps = 18/404 (4%) Query: 28 IGLALGTFMEVLDTSIANVAVPTISGSLGVATSEGTWVISSYSVASAIAVPLTGWLARRV 87 I L + +F VL+ + NV++P I+ + WV +++ + +I + G L+ ++ Sbjct: 17 IWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL 76 Query: 88 GEVRLFTLSVLAFTIASALCGLAEN-FETLIAFRLLQGLVSGPMVPLSQTILMRSYPPAR 146 G RL ++ S + + + F LI R +QG + L ++ R P Sbjct: 77 GIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKEN 136 Query: 147 RGLALGLWAMTVIVAPIFGPLLGGWISDNYTWPWIFYINLPIGVFSAACAFFLLR-GRET 205 RG A GL V + GP +GG I+ W ++ +P+ + FL++ ++ Sbjct: 137 RGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPM--ITIITVPFLMKLLKKE 192 Query: 206 KTTKQRIDAIGLALLVIGVSCLQMMLDLGKDRDWFNSTFITSLALIAVVSLAFMLVWEST 265 K D G+ L+ +G+ + F +++ S +++V+S + Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRK 242 Query: 266 EKEPVVDLSLFKDRNFALGAMIISFGFMAFFGSVVIFPLWLQTVMGYTAGLAGLATA-PV 324 +P VD L K+ F +G + F G V + P ++ V + G P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 325 GILALVLSPMIGRNMHRLDLRMVASFAFVVFAVVSIWNSMFTLDVPFNHVILPRLVQGIG 384 + ++ + G + R V + +V + S + I+ V G G Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-G 361 Query: 385 VACFFVPMTTITLSSIPDERLASASGLSNFLRTLSGAIGTAVSS 428 ++ ++TI SS+ + + L NF LS G A+ Sbjct: 362 LSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVG 405
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 276 bits (706), Expect = 2e-93 Identities = 82/324 (25%), Positives = 159/324 (49%), Gaps = 10/324 (3%) Query: 5 EFMSQEEVDALLKGVTGEDDSADEPAEASG---IRPYNIATQERIVRGRMPGLEIINDRF 61 E +SQ+E+D LL ++ D S ++ S I Y+ ++ + +M L ++++ F Sbjct: 3 EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62 Query: 62 ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121 ARL + +R + V+ V Y EF R++P P+ L ++ + PL+G ++ DP+ Sbjct: 63 ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122 Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVR 181 + F ++D LFGG G+ RD T E ++ ++ + + +W V L+ + Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180 Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239 E + QFA + P+E+V++ + G G ++ C+PY IEPI LSS ++ Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240 Query: 240 EVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLD---ITDSITAKVD 296 +++ VL ++ + ++++VA++ + + IL LR GD++ L + D + Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300 Query: 297 GVPVMECGYGIFNGQYALRVQRMI 320 C G+ + A ++ I Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324
>PERTACTIN#Pertactin signature. Length = 922 Score = 33.2 bits (75), Expect = 0.003 Identities = 24/93 (25%), Positives = 31/93 (33%) Query: 81 PKAGQRSPAGATPLAPRAPLPSANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAAQ 140 P A + +P P+ P P P P P +A AP P +AAA AA Sbjct: 568 PPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANAAVN 627 Query: 141 AAQAAQANAAALNADEAADLDLPSLTAHEAAAG 173 A+ A L L + A G Sbjct: 628 TGGVGLASTLWYAESNALSKRLGELRLNPDAGG 660
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 490 bits (1263), Expect = e-171 Identities = 204/576 (35%), Positives = 320/576 (55%), Gaps = 46/576 (7%) Query: 1 MDIKRTVLWVIFFMSAVMLFDNWQRSHGRPSMFFPNVTQTNTASNATNGNGASGASAAAA 60 MD +R +L + + M++ W++ Q T + T Sbjct: 1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQ-----PQAQQTTQTTTT------------- 42 Query: 61 ANALPAAATGAAPATTAPAAQAQLVRFSTDVYNGEIDTRGGTLAKLTLTK---AGDGKQP 117 AA AA + Q +L+ TDV + I+TRGG + + L + QP Sbjct: 43 ------AAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQP 96 Query: 118 DLSVTLFDHTANHTYLARTGLLGGDFPN-----HNDVYAQVAGPTSLAADQNTLKLSFES 172 L + + Y A++GL G D P+ +Y LA QN L++ Sbjct: 97 ---FQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTY 153 Query: 173 PVKGGVKVVKTYTFTRGSYVIGVDTKIENVGAAPVTPSVYMELVRD-----NSSVETPMF 227 G KT+ RG Y + V+ ++N G P+ S + +L + + + F Sbjct: 154 TDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNF 213 Query: 228 S-HTFLGPAVYTDQKHFQKITFGDIDKNKADYVTSADNGWIAMVQHYFASAWIPQSGAKR 286 + HTF G A T + ++K F I N+ ++S GW+AM+Q YFA+AWIP + Sbjct: 214 ALHTFRGAAYSTPDEKYEKYKFDTIADNENLNISS-KGGWVAMLQQYFATAWIPHNDGTN 272 Query: 287 DIYVEKIDPTLYRVGVKQPVAAIAPGQSADVSARLFAGPEEERMLEGIAPGLELVKDYGW 346 + Y + + +G K + PGQ+ +++ L+ GPE + + +AP L+L DYGW Sbjct: 273 NFYTANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGW 332 Query: 347 VTIIAKPLFWLLEKIHGFVGNWGWAIVLLTLLIKAVFFPLSAASYKSMARMKEITPRMQA 406 + I++PLF LL+ IH FVGNWG++I+++T +++ + +PL+ A Y SMA+M+ + P++QA Sbjct: 333 LWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA 392 Query: 407 LRERFKSDPQKMNAALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLASVEMRGAPWV 466 +RER D Q+++ +M LYK EKVNP GGC P++IQ+P+F++LY++L+ SVE+R AP+ Sbjct: 393 MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA 452 Query: 467 LWIHDLSQRDPYFILPVLMAVSMFVQTKLNPTP-PDPVQAKMMMFMPIAFSVMFFFFPAG 525 LWIHDLS +DPY+ILP+LM V+MF K++PT DP+Q K+M FMP+ F+V F +FP+G Sbjct: 453 LWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSG 512 Query: 526 LVLYYVVNNVLSIAQQYYITRTL---GGAAAKKKAS 558 LVLYY+V+N+++I QQ I R L G + +KK S Sbjct: 513 LVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS 548
>PF05272#Virulence-associated E family protein Length = 892 Score = 36.6 bits (84), Expect = 2e-04 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 9/123 (7%) Query: 191 IDFLEAADARGKLAHIR--ERLAHVLGDARQGALLREGLSV----VLAGQPNVGKSSLLN 244 + L K +R + + + ++ G VL G +GKS+L+N Sbjct: 555 VHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLIN 614 Query: 245 ALAGAELAIVTPI-AGTTRDKVAQTIQIEGIPLHIIDTAGLRETEDEVEKIGIARTWGEI 303 L G + T GT +D Q I L + R + E K + Sbjct: 615 TLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT--AFRRADAEAVKAFFSSRKDRY 672 Query: 304 ERA 306 A Sbjct: 673 RGA 675
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 26.2 bits (57), Expect = 0.037 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 33 AGATFGIHMERHAPHGHPEKWTVTHLASGMAAGVGPTRDAAIAHAAANLERN--KRRLRD 90 G G E A KW+ L A + AA A A A R+ +RL+D Sbjct: 37 GGGKGGSKSESSAAIHATAKWSTAQLKKTQAEQAARAKAAAEAQAKAKANRDALTQRLKD 96 Query: 91 MLDEAMTARA 100 +++EA+ A Sbjct: 97 IVNEALRHNA 106
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.012 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 2/167 (1%) Query: 20 TKPLKNVLNSNKGLAQALKQTRGELAELGKQQKAVASFREMRTGLAGTAEKLGEARTRVN 79 K L+ + L++ A + + A + E + Sbjct: 213 IKTLEAEKAALAARKADLEKALEGAMN--FSTADSAKIKTLEAEKAALEARQAELEKALE 270 Query: 80 GLATALRAADQPSRQMIADFEKAKQSAARLSIEHEKQSARVRELRAQLASTGIDTRQLAE 139 G A + + A+ + A L + + +A + LR L ++ +QL Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 140 HERTLRSNIAQTTAAMQTQTRQLEAMAEREKKLGAARGKMQALQGVA 186 + L + A+ Q+ R L+A E +K+L A K++ ++ Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 377
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 44.5 bits (105), Expect = 6e-07 Identities = 62/361 (17%), Positives = 114/361 (31%), Gaps = 45/361 (12%) Query: 66 LPEFSKAFGVSPAQSSLALSFATAALAAAVFVAGFVSEALSRHRLMTASLTASSLLTLAA 125 LP+ + F PA ++ + + V G +S+ L RL+ + + ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 126 AFAPHWHQLLIL-RALTGLALGGVPAVAMAYLAEEVHPDGLGLAMGLYVGGTAIGGMAGR 184 + LLI+ R + G PA+ M +A + + G A GL A+G G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 185 VITGILTDLFSWRIAVGAIGVLGLASMLAFRMLLPPSRH--------------------- 223 I G++ W + + + ++L R Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 224 ------------FVPRRGLNLAHHRTS----LAHHLRGQRELPVLFAMAFVLMGSFVTLY 267 V + + H R + L + ++ G+ Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 268 NYIGYRLLAPPYSMGQATIGA--IFVVYLVGVVASPLSGRLADTLGRGRVLI---ASLAV 322 + + Y ++ + + A IG+ IF + ++ + G L D G VL L+V Sbjct: 277 SMVPY-MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSV 335 Query: 323 MLGGVALTLLHPVAAIVAGVACVTFGFFAGHAVASGWVGR-LAQHGKGQAAALYLLAYYL 381 + L + + V G V S V L Q G +L +L Sbjct: 336 SFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFL 395 Query: 382 G 382 Sbjct: 396 S 396
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 74.1 bits (181), Expect = 2e-16 Identities = 79/257 (30%), Positives = 109/257 (42%), Gaps = 8/257 (3%) Query: 216 NGDASAPLAANGAAFDKLLAGAKAPAAQAAPTDASGANPATALANAAANAAQPDASG--A 273 N D +A L+A A K A + T L + AQPD + Sbjct: 124 NEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKPTLFTKLTSEQLTTAQPDDAPGTP 183 Query: 274 LAALQDAADSARATLAASSAPAALQQAA-PAALAANASAAAASAAPSLAPPVGTPDWTDA 332 L A++ S P+ + AA P AAP L+ P+G+ +W + Sbjct: 184 AQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSHEWQQS 243 Query: 333 LSQKVVFLSNAHQQSAELTLNPPDLGPLQVVLRVADNHAHALFVSQHAQVRDAVEAALPK 392 LSQ + + QQSAEL L+P DLG +Q+ L+V DN A VS H VR A+EAALP Sbjct: 244 LSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPV 303 Query: 393 LREAMEAGGLGLGSASVSDGGFASAQQQQTPQRQSSDGSATRRAFGASTADAALDELAAA 452 LR + G+ LG +++S F+ QQ + Q+QS +A D L Sbjct: 304 LRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQR-TANHEPLAGEDDDT----LPVP 358 Query: 453 SSGGAARRTVGMVDTFA 469 S VD FA Sbjct: 359 VSLQGRVTGNSGVDIFA 375
>FLGFLIJ#Flagellar FliJ protein signature. Length = 147 Score = 59.8 bits (144), Expect = 2e-14 Identities = 43/140 (30%), Positives = 74/140 (52%) Query: 1 MAQSFPLQLLLERAQDDLDTAAKQLGRAQRERTDAQAQLDALMRYRDEYRVRFAESAQSG 60 MA+ L L + A+ +++ AA+ LG +R A+ QL L+ Y++EYR +G Sbjct: 1 MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60 Query: 61 MPAGNWRNFQAFLDTLDAAIEQQRRVLAAAQTRIDAARPEWQAKKRTLGSYEILQARGAR 120 + + W N+Q F+ TL+ AI Q R+ L ++D A W+ KK+ L +++ LQ R + Sbjct: 61 ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120 Query: 121 QDAQRAAKREQRDADEHAAK 140 + +Q+ DE A + Sbjct: 121 AALLAENRLDQKKMDEFAQR 140
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 109 bits (273), Expect = 1e-31 Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 37 AAAALAAELQRVRDAAHAEGLAAGHVEGQALGYQAGYEQGRAKGFDEGQAEAHTHAAQLA 96 A +L +L +++ AH +G AG EG+ G++ GY++G A+G ++G AEA + A + Sbjct: 36 AEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIH 95 Query: 97 A----LAASFRDALAGVERDLADDIATLALEIAQQVVRQHVQHDPAALIAAAREVLAAEP 152 A L + F+ L ++ +A + +ALE A+QV+ Q D +ALI +++L EP Sbjct: 96 ARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEP 155 Query: 153 ALAGAPHLIVNPADLPVVEAYLKDELDTLGWSVRTDTSIERGGCRAHASTGEIDATLTTR 212 +G P L V+P DL V+ L L GW +R D ++ GGC+ A G++DA++ TR Sbjct: 156 LFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATR 215 Query: 213 WERV 216 W+ + Sbjct: 216 WQEL 219
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 298 bits (765), Expect = e-102 Identities = 114/324 (35%), Positives = 191/324 (58%) Query: 5 GLNKSALLLMSIGEEEAAQVFKFLAPREVQKIGAAMAALKNVTREQVEDVLNDFVQEAEK 64 G K+A+LL+SIG E +++VFK+L+ E++ + +A L+ +T E ++VL +F + Sbjct: 17 GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76 Query: 65 HTALSLDSSEYIRTVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSAAVAELIKNEH 124 + +Y R +L K+LG KA +I+ + + E ++ D A + I+ EH Sbjct: 77 QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136 Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVLLRIATLDGIQPTALRELDDVLTGLLSGS 184 PQ IA IL +LD +AS I S ++ +V RIA +D P +RE++ VL L+ Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196 Query: 185 DNLKRAPMGGIRTAAEILNFMTSVHEEAVIENVKQYDPDLAQKIIDQMFVFENLLDLEDR 244 + GG+ EI+N E+ +IE++++ DP+LA++I +MFVFE+++ L+DR Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256 Query: 245 AIQLLLKEVESEALIIALKGAPPALRQKFLSNMSQRAAELLAEDLDARGPVRVSEVETQQ 304 +IQ +L+E++ + L ALK +++K NMS+RAA +L ED++ GP R +VE Q Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316 Query: 305 RKILQVVRNLAESGQIVIGGKAED 328 +KI+ ++R L E G+IVI E+ Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 468 bits (1206), Expect = e-162 Identities = 254/562 (45%), Positives = 360/562 (64%), Gaps = 37/562 (6%) Query: 53 LSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVP 112 L+R++ NPR+P ++ + A+A +VA+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+P Sbjct: 16 LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75 Query: 113 YKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRAL 172 Y+FA+ GAI VPA++VHE RL+LA GLPKGG+VGFEL+D +KFGISQF+EQVNYQRAL Sbjct: 76 YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135 Query: 173 EGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTR 232 EGEL RT+E++ V++ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ AV Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195 Query: 233 MVSSSVPDMPAKNVTIVDQDGNLLTQT-ASATGLDASQLKYVQQIERNTQKRIDAILAPI 291 +VSS+V +P NVT+VDQ G+LLTQ+ S L+ +QLK+ +E Q+RI+AIL+PI Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPI 255 Query: 292 FGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPGAL 351 G GN +QV+A +DF+ EQT E Y PNG ++ +RS+Q + S ++ GVPGAL Sbjct: 256 VGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGAL 315 Query: 352 SNTPPQPASAPIVA-------------SNGQPAGPAATPVSDRKDSTTNYELDKTVRHVE 398 SN P P API ++ +A P S +++ T+NYE+D+T+RH + Sbjct: 316 SNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTK 375 Query: 399 QSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNV 458 ++G I+RLSVAVVVNY+ D K PL AD++ Q++ L ++AMG+ +KRGD++NV Sbjct: 376 MNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNV 431 Query: 459 VNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFP 515 VNS FSA + LP+W+Q I+ +WL V A L+ VRP L R Sbjct: 432 VNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAK 491 Query: 516 PPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENERNRYERNLDYA 575 E A + + L+ D + N+R E Sbjct: 492 AAQEQAQVRQETEEAVEVRLSKDEQLQQRR----------------ANQRLGAEVMSQRI 535 Query: 576 RTIARQDPKIVATVVKNWVSDE 597 R ++ DP++VA V++ W+S++ Sbjct: 536 REMSDNDPRVVALVIRQWMSND 557
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 61.6 bits (149), Expect = 7e-16 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 8/111 (7%) Query: 3 APVNGIASALQQMQAMAAQAAGGTSPATSLAGSGAASAGSFASAMKASLDKISGDQQKAL 62 + + GI + Q+QA A +A SFA + A+LD+IS Q A Sbjct: 1 SAIQGIEGVISQLQATA-MSARAQESLPQ-------PTISFAGQLHAALDRISDTQTAAR 52 Query: 63 GEAHAFEIGAQNVSLNDVMVDMQKANIGFQFGLQVRNKLVSAYNEIMQMSV 113 +A F +G V+LNDVM DMQKA++ Q G+QVRNKLV+AY E+M M V Sbjct: 53 TQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 28.4 bits (63), Expect = 0.037 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Query: 10 GLAWPPAGALAAGSVAAAPLPQAPIPAPSMSLPGFHAPPP 49 G AW P+ L G+ +A P+P P P + S+ F + P Sbjct: 21 GCAWIPSTPLVQGATSAQPVP-GPTPVANGSI--FQSAQP 57
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.010 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%) Query: 99 SVSAEMHAGFPALRSEMPLNVRESHPGRGATPAALADVARIDELWRTCVAASGGPFLFGA 158 +V+A + GFPAL + + S GA AA+AD+ +AA GPF FG Sbjct: 83 AVAAPVAFGFPALSTPGAGGLAVSISA-GALSAAIADI----------MAALKGPFKFGL 131 Query: 159 FSIA 162 + +A Sbjct: 132 WGVA 135
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 26.8 bits (59), Expect = 0.029 Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKQLMLKTLTI 139 V+ +E N+ + Y AN + L TA + + I Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.043 Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 8/136 (5%) Query: 2 GTTIRDVAQAANVSIGTVSRALKNQPGLSEATRARIVE-----IAHRMNYDPTQLRPRIK 56 T++ ++A+AA V+ G + K++ L P ++ Sbjct: 31 STSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLR 90 Query: 57 -RLTFLLHRQHNNFATTPFFSHVLHGVEDACRERGIVPSLLTTGPTDDVIRQMRPHAPDA 115 L +L + H E E +V + ++ Sbjct: 91 EILIHVLESTVTEERRRLLMEIIFHKCEFV-GEMAVVQQAQRNLCL-ESYDRIEQTLKHC 148 Query: 116 IAVAGFMEPETLEALA 131 I A Sbjct: 149 IEAKMLPADLMTRRAA 164
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 40.7 bits (95), Expect = 5e-06 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 2/144 (1%) Query: 2 RRAACVLALVLALHWLAALWLVRFREPFRPVEPD-HVPVQVELLKPQPIERAPAPEKPAA 60 RR L + +H L+ P P+ V ++ P +E A + P Sbjct: 12 RRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPE 71 Query: 61 DRPRAAPKRAARAPAPPAHAPRASAPVSSAAESSTESSAESPAAASGTEPASAAGGQAAG 120 P+ P PP AP + + + +P + Sbjct: 72 PVVEPEPE-PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFE 130 Query: 121 ATSGAAAGASGASAPPGEAAQGVK 144 T+ A +S A+A + V Sbjct: 131 NTAPARPTSSTATAATSKPVTSVA 154
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.002 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 8/80 (10%) Query: 68 PALETAPLNAPGAAPAAASDSAPGSPAASAPASAVAPASMPASVAAPAAPA----PSSPP 123 A E A L A A+ + D+ PG+ A A + P AP PS+ Sbjct: 451 QAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGE 510 Query: 124 AAQP----ARAPILPGASAA 139 A P A ++ A A Sbjct: 511 TANPFFTAAALTVMATAGVA 530
>PF03309#Bvg accessory factor Length = 271 Score = 203 bits (517), Expect = 5e-67 Identities = 58/279 (20%), Positives = 102/279 (36%), Gaps = 47/279 (16%) Query: 4 MCLLIDAGNSRIKWALADTARHFVTSGAFEHASDAPDWSTLPAPR------GAWISNVAG 57 M L ID N+ L G+ +HA W P I + G Sbjct: 1 MLLAIDVRNTHTVVGLIS--------GSGDHAKVVQQWRIRTEPEVTADELALTIDGLIG 52 Query: 58 DAAAA---------------RIDALIEARWPALPRTVVRASAAQCGVTNGYAEPARLGSD 102 D A + ++E WP +P ++ G+ P +G+D Sbjct: 53 DDAERLTGASGLSTVPSVLHEVRVMLEQYWPNVPHVLIEPGVR-TGIPLLVDNPKEVGAD 111 Query: 103 RWAGLIGAHAAFADEHLLIATFGTATTLEALRADGHFAGGLIAPGWALMMRSLGMHTAQL 162 R + A+ + +++ FG++ ++ + A G F GG IAPG + + +A L Sbjct: 112 RIVNCLAAYHKYGTAAIVV-DFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAAL 170 Query: 163 PTVSIDAATNLLDELAENDAHAPFAIDTPHALSAGCLQAQAGLIE----RAWRDLEKAWQ 218 V + +++ + +T + AG + AGL++ R D++ Sbjct: 171 RRVELTRPRSVIGK------------NTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSG 218 Query: 219 APVRLVLSGGAADAIVRALTVPHTRHDTLVLTGLALIAH 257 A V +V +G A ++ L L L GL L+ Sbjct: 219 ADVAVVATGHTAPLVLPDLRTVEHYDRHLTLDGLRLVFE 257
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.027 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 198 AAAEVDALRARDATLAGGLP----PVALAAVRAGATLTDTFAAALNALA 242 A+ V +R D L GG+ +A G TLT T A LNAL Sbjct: 74 ASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALT 122
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 31.8 bits (72), Expect = 0.003 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%) Query: 163 YGEFFATGILIMAFMSIGVVSTA-TTIATLRERNTFKMYVCFPVSRF-VFLASLIVSRVI 220 Y F A G++ + M+ T + + T++ + + + L + + Sbjct: 65 YTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATK 124 Query: 221 LMLAASVTLMLAARYLFQVPLPLWSLRALRAIPVVLLGAAMLLSLGTLLASRARSLAAAE 280 LA + ++AA + SL L A+PV+ L SLG ++ + A S Sbjct: 125 AALAGAGIGVVAAALGY---TQWLSL--LYALPVIALTGLAFASLGMVVTALAPSYDYFI 179 Query: 281 AWCNLIYFPLLFFSDLTIPLRAAPHWLRVVLLVLP 315 + L+ P+LF S P+ P + LP Sbjct: 180 FYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLP 214
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 511 bits (1318), Expect = e-175 Identities = 194/567 (34%), Positives = 311/567 (54%), Gaps = 7/567 (1%) Query: 308 PNTLAGVCAAPGIAVGTLVRWDDAQIVPPELASGTPAAESRLLDRALAEVDAQLETTVRE 367 + + G+ A+ G+A+ + + + + + E L AL + +L + Sbjct: 2 HHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQ 61 Query: 368 ASRRGAIGEAGIFAVHRVLLEDPALVDAARDLI-SLGKSAGYAWRETIRAQTAVLADVDD 426 +A IFA H ++L+DP LVD + I + +A YA +E ++ +D+ Sbjct: 62 TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121 Query: 427 TLLAERAADLRDIDKRVLRAL-GYASASARELPAEAVLAAEEFTPSDLASLDRERVAALV 485 + ERAAD+RD+ KRVL L G + S + E V+ AE+ TPSD A L+++ V Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181 Query: 486 MARGGATSHAAIIARQLGIPALVAVGDALYAIAQRTQVVVDASAGRLEYAPSALDVERAR 545 GG TSH+AI++R L IPA+V + I V+VD G + P+ +V+ Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241 Query: 546 HERQRLAGVREANRRMSGEAALTRDGHRIEVAANIATLDDARVALDNGADAVGLLRTELM 605 +R ++ ++ GE + T+DG +E+AANI T D L NG + +GL RTE + Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301 Query: 606 FIHRQAAPTASEHQQSYQSIVDALQGRTAIIRTLDVGADKEVDYLTLPPEPNPALGLRGI 665 ++ R PT E ++Y+ +V + G+ +IRTLD+G DKE+ YL LP E NP LG R I Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361 Query: 666 RLAQVRPDLLDDQLRGLLAVKPYGSVRILLPMVTDVGELVRIRKRIDD-----FARAMGR 720 RL + D+ QLR LL YG+++++ PM+ + EL + + + + + + Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421 Query: 721 AQAVEVGVMIEVPSAALLADQLAQHADFLSIGTNDLTQYTLAMDRCQADLAAQADGLHPA 780 + ++EVG+M+E+PS A+ A+ A+ DF SIGTNDL QYT+A DR ++ HPA Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481 Query: 781 VLRLVDATVRGAEKHGKWVGVCGALGGDPVAVPVLAGLGVTELSVDPVSVPGIKAQVRRL 840 +LRLVD ++ A GKWVG+CG + GD VA+P+L GLG+ E S+ S+ ++Q+ +L Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541 Query: 841 DYQLCRQRAQDLLALESAQAVRAASRE 867 + + AQ L L++A+ V ++ Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKK 568
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.023 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 176 VVVDGAAPAVLRYDDTDDELRYVETLPADAQNNSPGNAPP--AAAQPVANRALPSVKRQR 233 V + G P+ + DD + + V +LPAD SP ++ P A V R + VK +R Sbjct: 134 VALYGVLPSQIAKDDPNMMSKIVTSLPADDITESPVSSLPLDKATVNVNVRVVDDVKDER 193 Query: 234 ALPGALDLRGVELTLPELPSAQVAALRERAGTLGLDGARVPVWGVVAPRRLPADIAVPGG 293 + GV +++P + A ER G PV + PA + G Sbjct: 194 QNISVVS--GVPMSVPVVD----AKPTERPGVFTASIPGAPVLNISVNNSTPAVQTLSPG 247
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 34.0 bits (78), Expect = 1e-04 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 51 KRETKQQFIDAITAGRRRYRQIEIQSQDVL-PVGDATYVVAG 91 KRE K+ +RR EIQS+++ V ++ VVA Sbjct: 222 KREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAN 263
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 86.0 bits (213), Expect = 1e-20 Identities = 77/368 (20%), Positives = 143/368 (38%), Gaps = 31/368 (8%) Query: 17 RATTSLAAIFALRMLGLFMIMPVFSVYAKTIPGGENVVL-VGIALGAYGVTQSLLYIFYG 75 R + + AL +G+ +IMPV + + +V GI L Y + Q G Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 76 WASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGM-GAVSSAVLAFIADLT 134 SD+FGR+PV+ L A+ + A A + + +GR++ G+ GA + A+IAD+T Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 135 SEHNRTKAMAMVGGSIGMSFAVAIVGAPI--VFHWVGMSGLFAIVGALSVAAIGVVLWVV 192 R + + G + G + + F AL+ +++ Sbjct: 125 DGDERARHFGFMSACFGFGM---VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 193 PDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVA----- 247 P++ + P E L+ + R G+ V+ A F+ + + G +P A Sbjct: 182 PESHKGERRPLR-REALNPLASFRWARGMTVVAALMAVFFI----MQLVGQVPAALWVIF 236 Query: 248 ----SHWQ-----VYLPVMGL--AFVMMVPAIIVAEKQGRMKPVLLGGIAAILIGQLLLG 296 HW + L G+ + + VA + G + ++L G+ A G +LL Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYILLA 295 Query: 297 VATHTILIVAAILFVYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGV 356 AT + + V I + +++S+ R+G G S+ +G + Sbjct: 296 FATRGWMAF--PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 357 VGGVLLKH 364 + + Sbjct: 354 LFTAIYAA 361
>cloacin#Cloacin signature. Length = 551 Score = 45.9 bits (108), Expect = 3e-08 Identities = 29/71 (40%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 109 GGRGGSGGGGGGGDDGGYGG----GGGGYGGGRDMERGGGGGRASGGGGAGARSGGGGGA 164 GG G G GGG D G+ GGG G G G G G G G +G SG GG Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 165 SRPSAPAGGGF 175 S +AP GF Sbjct: 82 SAVAAPVAFGF 92 Score = 33.1 bits (75), Expect = 5e-04 Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 109 GGRGGSGGGGGGGDDGGYGGGGGGYGGGRDMER---GGGGGRASGGGGAGARSGGGGGAS 165 G + G GG G GGG G G E GGG G GG GGG + Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 166 RPSAPAGGG 174 GG Sbjct: 71 SGGGSGTGG 79 Score = 32.4 bits (73), Expect = 0.001 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 113 GSGGGGGGGDDGGYGGGGGGYGGGRDMERGGGGGRASGGGGAGARSGGGGGASRPSAPAG 172 G G G G GG G G GG G GGG +GG + + G S P Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGN------SGGGSGTGGNLSAVAAPVAFGFPALSTPGA 100 Query: 173 GG 174 GG Sbjct: 101 GG 102 Score = 29.7 bits (66), Expect = 0.007 Identities = 17/53 (32%), Positives = 18/53 (33%) Query: 109 GGRGGSGGGGGGGDDGGYGGGGGGYGGGRDMERGGGGGRASGGGGAGARSGGG 161 GG G GGG G GG G GG + G G GG G Sbjct: 58 GGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG 110
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.2 bits (70), Expect = 0.004 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 26/151 (17%) Query: 131 GAKLVQTDEILTALEQYKAENPHLAKRVSKIAGYVKDIDKEVLVQSPK-VPASAIFNERS 189 G K+ +E L A E+YK L K+ SK D++ + + V Sbjct: 380 GKKIGNVNEALAAFEKYKDV---LNKKFSKA-------DRDAIFNALASVKYDDWAKH-- 427 Query: 190 LRTALGFTKYARVVQIFGIVFTAYDLDVAAEQSVQTKSIRP--IRREAVRQMGGWSGATA 247 ++A+ ++I G V YD+ + T +P + E G S A Sbjct: 428 ------LDQFAKYLKITGHVSFGYDVVSDILKIKDTGDWKPLFLTLEKKAADAGVSYVVA 481 Query: 248 GARIGAALGASIGVETGPG-AIITGAIGGLL 277 G ++G+ G AI+TG + + Sbjct: 482 LL-FSLLAGTTLGI---WGIAIVTGILCSYI 508
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.4 bits (63), Expect = 0.004 Identities = 6/40 (15%), Positives = 16/40 (40%) Query: 4 PVERALVAAGDDLALARRRRGLSTSSMAERAGISKKTLYR 43 + ++ L + S +A+ AG+++ +Y Sbjct: 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW 50
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.6 bits (84), Expect = 3e-04 Identities = 39/279 (13%), Positives = 92/279 (32%), Gaps = 38/279 (13%) Query: 232 LQFLTDKISELEAARRALSDTLTKLKQDRTLPRKDANKARASADTLRSTLNAARQAEFAA 291 ++ L + + LEA + L L T A L + +A A Sbjct: 178 IKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGA 237 Query: 292 KDRLAALELDIEDSRLFVGELKSRLQSLGESKETRTYFSNLQFQFCPSCLAELPKATADS 351 + A I+ L++R L ++ E F + A++ A+ Sbjct: 238 MNFSTADSAKIKTLEAEKAALEARQAELEKALEG-------AMNFSTADSAKIKTLEAE- 289 Query: 352 HVCHLCTGSLGDGRADTQLLRMKNELNIQLKESTTLIETRLKDAEKLRVEVPHLSQRVRK 411 + + ++++ + +L L + + + ++ Q++ + Sbjct: 290 -----------KAALEAEKADLEHQSQVLNANRQSL-RRDLDASREAKKQLEAEHQKLEE 337 Query: 412 LEQDYAAAATSWSSELEIALEEHARKLGAVD--EEIRQAYE----------------QQK 453 + A+ S +L+ + E + EE + E +++ Sbjct: 338 QNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQ 397 Query: 454 LATVITDLQKRRDALTAEGKRLQESIIRLEQQQAERKVE 492 + + + + AL K L+ES E+++AE + + Sbjct: 398 VEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAK 436
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.2 bits (70), Expect = 0.016 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 521 AMAARNPRPSPPTKITQNPPSSTPAPRPVVPQPMSAPRPIPQ---PVERGHREPPAAASP 577 A A P+P+P P P P PQP P+ P+ P RE AAA+ Sbjct: 565 AKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSAAANA 624 Query: 578 AATT 581 A T Sbjct: 625 AVNT 628
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 113 bits (285), Expect = 5e-30 Identities = 76/338 (22%), Positives = 122/338 (36%), Gaps = 46/338 (13%) Query: 138 PNYPPSEGASFSPAWHLQKAGFPRAWQTTKGEGIRIAHLDIGWWPNHYSAPLKVRKDLGY 197 + + P ++ P W T+G G+++A LD G +H LK R G Sbjct: 11 QVIKQEQQVNEIP-RGVEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPD--LKARIIGGR 67 Query: 198 NFVEGNSNTVDPGVGPNKGHGTATLALLAGNAVSLCGKAGQSEGDQVYRGFIGGAPSAEI 257 NF + + + GHGT +A +G AP A++ Sbjct: 68 NFTDDDEGDPEI-FKDYNGHGTHVAGTIAATENENGV--------------VGVAPEADL 112 Query: 258 VPVRIAGVDGSVVYLYGETMARGLAYAINPGDGRRCDVVSLSHGG-LPMKSWAHAVNMLY 316 + +++ GS + + +G+ YAI D++S+S GG + AV Sbjct: 113 LIIKVLNKQGS---GQYDWIIQGIYYAIEQK----VDIISMSLGGPEDVPELHEAVKKAV 165 Query: 317 DAGVVVVAAAGDSYWAVLTDIATHFTVYPSAFYRVVTSTGVTFDDGPYKRDRLGVMQGCW 376 + ++V+ AAG+ D T YP + V++ + FD + Sbjct: 166 ASQILVMCAAGNE---GDGDDRTDELGYPGCYNEVISVGAINFDRHASE-----FSNSNN 217 Query: 377 GPDKVMKKAVGAY-TPNVPWMCYNTKYGWDMNGAGTSASTPQMAAACALWLAKYGSVFPN 435 D V A G VP Y T +GTS +TP +A A AL + F Sbjct: 218 EVDLV---APGEDILSTVPGGKYATF-------SGTSMATPHVAGALALIKQLANASFER 267 Query: 436 DWRRVAACRAALGRSVADAEKDFSEIGLGRLDVSAMIE 473 D A L + G G L ++A+ E Sbjct: 268 DLTEPEL-YAQLIKRTIPLGNSPKMEGNGLLYLTAVEE 304
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 60.1 bits (145), Expect = 6e-11 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 41/208 (19%) Query: 12 LNLPSGGGSVSGDGGDFSVDLNTGTATLKFDLTVPAGPNGITPPHTLQYSAGAGDGAFGI 71 LP GG ++S G D G A++ L + A G P L YS+G G+G FG+ Sbjct: 18 PFLPKGGKALSQSGPD-------GLASITLPLPISAE-RGFAPALALHYSSGGGNGPFGV 69 Query: 72 GWSLGLMTIRRR-----------------------ITPATGAAEPAPPGACSLVGVGELV 108 GWS M+I R T +TG A P P + V Sbjct: 70 GWSCATMSIARSTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDA-PNPVTCFAYGDVSFPQ 128 Query: 109 DMGARRFRPIVDATGLLIEFTGAS------WTATDKTDTQYTLGTSANARIG---GGALP 159 R++P +++ +E+ + W D + LG +A AR+ + Sbjct: 129 SYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHT 188 Query: 160 AAWLVDRCADSAGNAIAYTWLDVGGARV 187 A WLV+ AG I Y++L G V Sbjct: 189 AQWLVEESVTPAGEHIYYSYLAENGDNV 216
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 35.1 bits (80), Expect = 0.002 Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 13/196 (6%) Query: 524 VSQASGQINAAQQQLAVAQAQAQAYQAGVALAQTRATNAAKNAQ-EYGSLNSQVIVIQAT 582 +S+ + + AQ++L+ AQ++ + +R +++ E +L + + Sbjct: 184 LSEEAKAVEIAQKKLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQA 243 Query: 583 GQQVSGGDDGDYNGVSAMANQYLSGQ-RISGDSATVAAATNLAANRL---SQQFQIDSMN 638 + D+ +S AN L + V A + + + +I+ +N Sbjct: 244 SAKYKELDE-LVKKLSPRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRIN 302 Query: 639 RTTAEMQQALAQAQAQLAAANAQVSAAGANLAVAQLNAQAAAQTLGVFDADTFTPQVWKA 698 ++Q+A++Q A A+V A NL AQ N + DA T ++ Sbjct: 303 ADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIK----DAVDATVSFYQT 358 Query: 699 MGNFVDQIYERYMNMA 714 + ++ E+Y MA Sbjct: 359 LT---EKYGEKYSKMA 371
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.9 bits (77), Expect = 0.004 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 149 QVLDGLAHAHANGVVHRDLKPQNVMVTTRDGEPCAKILDFGI 190 ++LD H GVVH D+KP NV+ GEP ++D G+ Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPV--VIDLGL 292
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 31.3 bits (70), Expect = 0.002 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 111 APPGPPAP-ASPASPRTTDRAPAHAPARDPLDAANREPNAPGEPDELGELG----EPDVP 165 AP P P SPA + AP P P + + N PD G+ G P VP Sbjct: 322 APNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVP 381 Query: 166 DEPDDAASKTR 176 D P+ K R Sbjct: 382 DRPNGRHRKER 392
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 8e-11 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 484 RALVVDDNENARETLGAMLATLGIRVDLRGTGKEGLRCFGECQHDIVVLDLELPDISGFE 543 LV DD+ R L L+ G V + R D+VV D+ +PD + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 544 VAEQIRWATSSDAARKTTILGVSAYES------ALLKGDHAIFDAFIPKPIHLDTLGGIV 597 + +I+ A +L +SA + A KG +D ++PKP L L GI+ Sbjct: 65 LLPRIK-----KARPDLPVLVMSAQNTFMTAIKASEKG---AYD-YLPKPFDLTELIGII 115 Query: 598 SR 599 R Sbjct: 116 GR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 5e-05 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 188 ARIAVVDDSPDVAETICEYFAEKGVAAIAYYDSVSFRKALEVEDFDGYILDWLLGEETAA 247 A I V DD + + + + G ++ + + + D D + D ++ +E A Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 248 PLVRGIRASENADAPIFLLTGKISTGEASEDEIADIVSSFNARCEE---KPVRLPILFAE 304 L+ I+ D P+ +++ ++ + + + KP L L Sbjct: 64 DLLPRIK-KARPDLPVLVMSA--------QNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 305 VARAL 309 + RAL Sbjct: 115 IGRAL 119
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 8e-04 Identities = 47/264 (17%), Positives = 93/264 (35%), Gaps = 28/264 (10%) Query: 81 AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALG 140 A V G L D GR+ L+++ + ++ P V++I R++ G+ G Sbjct: 60 APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-------FLWVLYIG-RIVAGIT-G 110 Query: 141 GEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRV 200 A Y+A+ R + ++ G+ + G +G G + Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGM------VAG--PVLGGLM-GGFSPHA 161 Query: 201 PFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLT 260 PF A+ L ++ L + + + PL + + L Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF-----RWARGMTVVAALM 216 Query: 261 AGQAVVWYTGQFYA---LFFLTQTLKVDGASANILIALALLIGTPF-FVFFGSLSDRIGR 316 A ++ GQ A + F D + I +A ++ + + G ++ R+G Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 317 KPIILAGCLIAALTYFPLFKALTH 340 + ++ G +IA T + L T Sbjct: 277 RRALMLG-MIADGTGYILLAFATR 299 Score = 34.8 bits (80), Expect = 8e-04 Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 291 ILIALALLIGTPFFVFFGSLSDRIGRKPIILAGCLIAALTYF 332 IL+AL L+ G+LSDR GR+P++L AA+ Y Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88
>PF06580#Sensor histidine kinase Length = 349 Score = 46.8 bits (111), Expect = 1e-07 Identities = 49/229 (21%), Positives = 86/229 (37%), Gaps = 53/229 (23%) Query: 300 LAGLRTQAEF-ALRHEVNA-------DVARSLEQIATSSEQAARLVTQLLALARAENRAT 351 +A + +A+ AL+ ++N + R+L I +A ++T L L R Sbjct: 154 MASMAQEAQLMALKAQINPHFMFNALNNIRAL--ILEDPTKAREMLTSLSELMRY----- 206 Query: 352 GLTFEPVEIASLARQ--AVRDWV---QAALAKQMDLGYEGPDTDAPLRIDGQPVMLREML 406 L + SLA + V ++ ++ + +++ P ML + Sbjct: 207 SLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQV---PPML---V 260 Query: 407 GNLIDNAIRY----TPAGGRITVRVHAERAAGAVHLEVEDTGPGIPPNERERVVERFYRI 462 L++N I++ P GG+I ++ + G V LEVE+TG N +E Sbjct: 261 QTLVENGIKHGIAQLPQGGKILLK--GTKDNGTVTLEVENTGSLALKNTKE--------- 309 Query: 463 LGREGDGSGLGLAIVRE-IVAQHGGTLTIDDNVYQTSPRLAGTLVRVSI 510 +G GL VRE + +G I S + V I Sbjct: 310 ------STGTGLQNVRERLQMLYGTEAQIK-----LSEKQGKVNAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 98.8 bits (246), Expect = 6e-26 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61 IL+A+DD+ + L ++L ++GY V N ++ DL++ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNE-LEARVRALTRR 118 +L R++ +LPVL+++A ++ +K + GA DY+ KPF L E + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 41.1 bits (96), Expect = 4e-07 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 23/124 (18%) Query: 1 MRARGFTLIELMIVLAIVGVVAAYAIPAYQDYLARSRVGEGLALAAS--ARLAVAENAAS 58 MR RGFTL+E+M++L ++GV A + A+ SR A A+L + Sbjct: 1 MRQRGFTLLEMMLILLLMGVSAGMVLLAFPA----SRDDSAAQTLARFEAQLRFVQQRGL 56 Query: 59 GNGFSGGYVSPPATRNVDSIRVDDDSGQIVV-----AFTTRVAAAGANTLVLVPSAPDQA 113 G G + V D Q +V A G + +P + Sbjct: 57 QTGQFFG------------VSVHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRV 104 Query: 114 DTPT 117 T Sbjct: 105 ATSG 108
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 39.6 bits (92), Expect = 9e-07 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 2/97 (2%) Query: 18 AGCATFAPRDAAKLECTMPVAAYPENAKPLERRATVLVRAMITASGNAENVTVTTSSRNA 77 + T L P YP A+ L V V+ +T G +NV + ++ Sbjct: 147 SKPVTSVASGPRALSRNQPQ--YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN 204 Query: 78 AADRAAVDAMSRIACSQTPARGGEPYPFTLTRPFVFE 114 +R +AM R G E Sbjct: 205 MFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTE 241
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.021 Identities = 14/35 (40%), Positives = 17/35 (48%) Query: 50 VVFVGPSGCGKSTLMRMIAGLEEISGGELLIDGAK 84 VV G G GKSTL+ + GL+ S I K Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>PF06776#Invasion associated locus B Length = 214 Score = 29.5 bits (66), Expect = 0.020 Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 2/49 (4%) Query: 1 MKTGRRHFVRSVASASAALAAAAWSPARAAIDAPASPATALSLTPGRWS 49 + + RR R+ A A A A A A+ G W Sbjct: 38 LASCRRLARRNGARLMLAGAMAI--ALSFGWSDRADAQGAVRSVHGDWQ 84 Score = 28.7 bits (64), Expect = 0.039 Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 10 RSVASASAALAAAAWSPARAAIDAPASPATALSLTPG 46 +++ A L+ S R A A A ++ Sbjct: 25 KAIQMGPAELSPMLASCRRLARRNGARLMLAGAMAIA 61
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.8 bits (67), Expect = 0.018 Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 57 REDALFRFASVSKPIVSAAAMRAVAAGKLDLDASI 91 R D F S K ++ A + V AG L+ I Sbjct: 57 RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKI 91
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 35.2 bits (81), Expect = 4e-04 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 5/155 (3%) Query: 26 LLALATAGFITIVTEALPAGLLPLMGRDLRVSDALVGQLVTVYAAGSIVAAIPLVAATRG 85 L+ L F +++ E + LP + D A + T + + + Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 86 MRRRPLLLAALAGFVVANTATAASPYYAPVLV-ARCVAGVSAGLLWALLAGYASRMVDAR 144 + + LLL + + + +L+ AR + G A AL+ +R + Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 145 QRGRAIAIAMLGAPVAMSVGI-PL-GTALGAALGW 177 RG+A ++G+ VAM G+ P G + + W Sbjct: 136 NRGKAFG--LIGSIVAMGEGVGPAIGGMIAHYIHW 168
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.8 bits (178), Expect = 2e-17 Identities = 55/199 (27%), Positives = 75/199 (37%), Gaps = 16/199 (8%) Query: 3 IRDNVFLITGGASGLGAGTARLLTEAGGKVVLADLNQQAGEALARELGGAF-----VKCD 57 I + ITG A G+G AR L G + D N + E + L D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 58 VAREEDAQAAVAA-AAKLGTLRGLVNCAGIAPAAKTVGKDGPHPLELFAKTITVNLIGTF 116 V A ++G + LVN AG+ G E + T +VN G F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVL----RPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 117 NMIRVAAAAMAANEPAQTGERGVIVSTASVAAFDGQIGQAAYAASKAGVAGMTLPIARDL 176 N R + M G IV+ S A + AAYA+SKA T + +L Sbjct: 122 NASRSVSKYMMDRR------SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 177 SRNAIRVMTIAPGIFETPM 195 + IR ++PG ET M Sbjct: 176 AEYNIRCNIVSPGSTETDM 194
>SECA#SecA protein signature. Length = 901 Score = 24.8 bits (54), Expect = 0.027 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%) Query: 33 KLAYPIRDGIPVMLVDEARQTVEGTPVDPAGPARGR 68 KL Y + D + +L+DEAR TP+ +GPA Sbjct: 202 KLHYALVDEVDSILIDEAR-----TPLIISGPAEDS 232
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 27.4 bits (60), Expect = 0.015 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Query: 23 QTERLALEEQVAQLRNEAQTLHAELEQLRDERNALAAERDTLSAKIDDAQVKLNAILEKL 82 Q + +E Q+ E QT E ++ D A + DT + D A KL KL Sbjct: 112 QAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 171 Query: 83 ----PRTKNVPDAENQLDLLAPQANDEGE 107 P AE ++ +A + E Sbjct: 172 QSLDPADPGYAQAEAAVEQAGKEATEAKE 200
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 29.8 bits (66), Expect = 0.016 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 8/109 (7%) Query: 8 AALAALSGLPCIALAQGDASASSASFASSVS--YAPAAA--SPADADSALSTAPAAAAAS 63 A AA GL A+ A AS AS A++ + YAP+A + +SA + AP A Sbjct: 5 ARWAATLGLTATAVCGPLAGASLASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTL 64 Query: 64 PASGAARGAEAVSADAASAV--ASGASSASPARAASAAQL--APVVVTA 108 + A G +A A + + A G SA A + APVVVT Sbjct: 65 TCAPTASGTHPAAAAACAELRAAHGDPSALAAEDSVMCTREYAPVVVTV 113
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 39.5 bits (92), Expect = 8e-06 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 42 AITLAAPARRVVSLAPHVTELIYAAG----GGAKLVGAVSYSDYPPAAKAIARVGSNKAL 97 A A R+V+L EL+ A G G A + + PP ++ VG Sbjct: 28 AHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEP 87 Query: 98 DLERIAALKPDLIVVWRHGNAEHETERLRALGIPLYFSEPRH-LDDVAASLDKLGLLLGT 156 +LE + +KP +V E A G FS+ + L SL ++ LL Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 157 HEIASAAADAYRRRIAQLRARYADK--PPVTVFFQAWDKPLITLNGDH-IVSDVIALCGG 213 A Y I ++ R+ + P+ + D + + G + + +++ G Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPL-LLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 214 RNVFAR 219 N + Sbjct: 207 PNAWQG 212
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 118 bits (296), Expect = 6e-31 Identities = 76/397 (19%), Positives = 157/397 (39%), Gaps = 14/397 (3%) Query: 43 LAVLDGAIANVALPTIARDLRASDAASIWIVNAYQLAVTISLLPLASLGDRIGYRRVYIA 102 +VL+ + NV+LP IA D A++ W+ A+ L +I L D++G +R+ + Sbjct: 25 FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84 Query: 103 GLMLFTAASLGCALSGT-LPALATLRVIQGFGAAGIMSVNTALVRMIYPSSQLGRGVAIN 161 G+++ S+ + + L R IQG GAA ++ +V P G+ + Sbjct: 85 GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144 Query: 162 AMVVALSSAVGPTVASAVLAVAPWPWLFAINVPIGVAAVCGSLRALPANPGRSAPYDFIG 221 +VA+ VGP + + W +L I + I + V ++ L +D G Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 222 AVMNACVFGLLIVSVDGLGHGGNRASVALTALVAAVIGYF-FVKRQLTQPAPLLPVDLMR 280 ++ + V + S ++ L+ +V+ + FVK P + L + Sbjct: 204 IIL-------MSVGIVFFMLFTTSYS--ISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 281 VPIFALSIGTSVASFTSQMLAFVALPFWLQNTLGFSQVQTG-LYMTPWPLVIVVAAPLAG 339 F + + F + +P+ +++ S + G + + P + +++ + G Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG 314 Query: 340 VLSDRYSAGALGGIGLALFASGLFALATIGAHPTPVDIVWRMALCGAGFGLFQSPNNRAI 399 +L DR + IG+ + + + T + + G ++ + + Sbjct: 315 ILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFVLGGLSFTKTVISTIV 373 Query: 400 LSSAPRERAGGASGMLGTARLTGQTLGAALVALIFGI 436 SS ++ AG +L + G A+V + I Sbjct: 374 SSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>cloacin#Cloacin signature. Length = 551 Score = 27.8 bits (61), Expect = 0.012 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 49 GTVNVWGGDGWRDRDHWRGGDDRWHGGWRGGGNWRDGNDWHGGRGNGWQGGRGPAGGRN 107 G + G G D W ++ W GG G +W G HG G G G G N Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW-GGGSGHGNGGGNGNSGGGSGTGGN 80 Score = 26.2 bits (57), Expect = 0.048 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 74 GGWRGGGNWRDGNDWHGGRGNGWQGGRGPAGGRNVRGGNDWPDGGGNGRGG 124 G G G + N W GG G+G G G G GN GGG+G GG Sbjct: 32 GASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN---SGGGSGTGG 79
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.8 bits (69), Expect = 0.025 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Query: 460 ARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKE-------IEADAK 504 +R K ++EK LEE ++ A LE+L K+L KE +EA+AK Sbjct: 391 SREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAK 442
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 3e-05 Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 3/141 (2%) Query: 148 SQQQADAARARHDARAARLKREREAAEARAAARRAASAAAAHAPASSAAAPAAPAADDAD 207 S+Q++ + RE A+ + +A + A + S Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 208 AKKRAIIAAALERARKKKEALAAQGAGPKNTEGVSAAVQAQIDAAEARRRRLAEQRDAAD 267 A A +E + ++ PK + + QA+ ++ Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE---PARENDPTVNIKEPQS 1160 Query: 268 EPGRPDDANAAGDDASPPSKT 288 + D + S + Sbjct: 1161 QTNTTADTEQPAKETSSNVEQ 1181
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 72.0 bits (176), Expect = 1e-17 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 11/194 (5%) Query: 5 KIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKEQLFTAVL 64 K K++ + TR+ IL A F+ G+ + +IA+ A +Y++F K LF+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 65 EYAFSALMEAERAIDLEGVAPVEAITR---LAHFVWDYYRDHPDLLRLLNNENLHEARYL 121 E + S + E E + ++ R + + LL + + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 122 QKSTRIREMI-SPIVKTLDGVLERGQKAGLFRTDIDSLRFYVTLSGL------GYYMVSN 174 + + + ++ L+ +A + D+ + R + + G + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 175 RFTLAAIFGRDFSA 188 F L RD+ A Sbjct: 184 SFDLKKE-ARDYVA 196
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.7 bits (105), Expect = 5e-06 Identities = 54/322 (16%), Positives = 97/322 (30%), Gaps = 42/322 (13%) Query: 534 NDHAPTSAETVAPDGHVPTSAETAAPDSHAPTSAETAAPDGHAPTSAETATPNDHASTSA 593 N +TV + A S + E A D ATP++ T A Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 594 ETAAPDSHAPTSAETAA--PDGHASTITEAAAPNGHVSATVETSAVAAPVGITQAAPPIA 651 E + +S E A + + A N V A +T+ VA T+ Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSN--VKANTQTNEVAQSGSETKETQTTE 1099 Query: 652 ADTCPAGEHVIAAVEPAGTSDSAAIGAGAIAHAEAGAAASTAETASPIGVDTHIAPSREA 711 E E A T +T V + ++P +E Sbjct: 1100 TKETATVE------------------------KEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135 Query: 712 DRTAQTAPTAPSPAEATPHVDAPHALDVAARALVGNTAATAHGAAAVDGSAQRADTASPA 771 T Q + T ++ P + NT A A S Sbjct: 1136 SETVQPQAEPARENDPTVNIKEPQSQT--------NTTADTEQPAKETSSNVEQPVTEST 1187 Query: 772 ASTSGPPAPVAASAASSDRAAPQPVATAAPASIATSGALGTMKAIGAAGPQPSTIAAQRA 831 +G V + ++ A QP + ++ + +++++ +P+T ++ Sbjct: 1188 TVNTGN--SVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV-PHNVEPATTSSNDR 1244 Query: 832 SAIDDTGQPPSTGHSTHAAVSN 853 S + T +T+A +S+ Sbjct: 1245 STV---ALCDLTSTNTNAVLSD 1263 Score = 43.1 bits (101), Expect = 1e-05 Identities = 44/291 (15%), Positives = 81/291 (27%), Gaps = 31/291 (10%) Query: 379 RAQARPAAPDPRFAPRRPATQAAVSAARNRPMTFTPSRQTTGATPPQPAPRAQTA----- 433 + R D QA V + + PP PA ++T Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARV-DEAPVPPPAPATPSETTETVAE 1042 Query: 434 -----APTAETARKRAPANPARAPLYAWHEKPAERIAPAAS--VHETLRSIEASAAQWTA 486 + T E + A A+ A K + + + E + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 487 LAGATSTAATPVTARESMAAPAAPSGGAAASAAPDGHAPTSAETAAPNDHAPTSAETVAP 546 A V ++ P S + + P AE A ND E + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP-QAEPARENDPTVNIKEPQSQ 1161 Query: 547 DGHVPTS---AETAAPDSHAPTSAETAAPDGHAP------TSAETATPNDHASTS----- 592 + A+ + + P + T G++ T+ T P ++ +S Sbjct: 1162 TNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKN 1221 Query: 593 --AETAAPDSHAPTSAETAAPDGHASTITEAAAPNGHVSATVETSAVAAPV 641 + H A T++ D + + + N + + + A A V Sbjct: 1222 RHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN-AVLSDARAKAQFV 1271 Score = 38.9 bits (90), Expect = 3e-04 Identities = 47/318 (14%), Positives = 85/318 (26%), Gaps = 39/318 (12%) Query: 690 ASTAETASPIGVDTHIAPSREADRTA-QTAPTAPSPAEATPHVDAPHALDVAARALVGNT 748 + T + I D PS + AP P PA ATP + Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPP-PAPATP----------SETTET-VA 1041 Query: 749 AATAHGAAAVDGSAQRADTASPAASTSGPPAPVAASAASSDRAAPQPVATAAPASIATSG 808 + + V+ + Q A + VA A S+ +A Q + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNRE------VAKEAKSNVKANTQ-------TNEVAQS 1088 Query: 809 ALGTMKAIGAAGPQPSTIAAQRASAIDDTGQPPSTGHSTHAAVSNELGRRPHAAPDAVTP 868 T + + +T+ + + ++ ++ + E + Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 869 ALPPAAAARAAAVPTSASAVQRQALASESAEAAQGVARAAAAGDSRETTQVSPAGARPDK 928 P + T+ +A Q S+ Q V + + +P P Sbjct: 1149 NDPTVNIKEPQS-QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE-NPENTTPAT 1206 Query: 929 AAPSAAGANPIAPLPGASAITAHEDAPTSAAPDAATPVIAAMDSAMPNAVAPASAIA--S 986 P+ S+ S A S + VA + + Sbjct: 1207 TQPTVNSE---------SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNT 1257 Query: 987 NAGMSPASASAAAPRMAS 1004 NA +S A A A + Sbjct: 1258 NAVLSDARAKAQFVALNV 1275 Score = 34.7 bits (79), Expect = 0.005 Identities = 37/279 (13%), Positives = 65/279 (23%), Gaps = 33/279 (11%) Query: 300 PPPASAMPAPTIAAAKPAAATMPPSGLSKAERLAAPTGGAAAPLAAPAAAVTSPAAFAPA 359 PPPA A P+ T + + + T A A A Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR--EVAKEAKSNVKAN--TQ 1081 Query: 360 ATGIAKPIGSTAAVAALGKRAQARPAAPDPRFAPRRPATQAAVSAARNRPMTFTPSRQTT 419 +A+ T + A + + ++ P Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 420 GATP-PQPAPRAQTAAPTAETARKRAPANPARAPLYAWHEKPAERIAPAASVHETLRSIE 478 A P + P P ++T PA+ ET ++E Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAK---------------------ETSSNVE 1180 Query: 479 ASAAQWTALAGATSTAATPVTARESMAAPAA-------PSGGAAASAAPDGHAPTSAETA 531 + T + S P + P P S H A T+ Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Query: 532 APNDHAPTSAETVAPDGHVPTSAETAAPDSHAPTSAETA 570 + + + + + + S A A + Sbjct: 1241 SNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.002 Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 48 DIGSDIAERAAIELGELRSVSRAEVSA 74 D IA A EL E+ + RA+ A Sbjct: 634 DSYEQIAGIVAYELSEMTAFRRADAEA 660
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 1e-22 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 7 TVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLD 66 T+++ +D+ IR + AL G V A DL + D+ +PD + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 VIRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHL--RRR 123 ++ ++ ++PV+V+SA+ + A + GA DYL KPF ++EL+ I L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 124 NQAGAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPL 160 + + V A++ ++R + T L Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 82.7 bits (204), Expect = 8e-24 Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Query: 8 IIVVQLLSALGVIGLVLLQHGKGADMGAAFGSGASGSLFGATGSANFLSRTTAVLATIFF 67 ++VV L+ A+G++GL++LQ GKGADMGA+FG+GAS +LFG++GS NF++R TA+LAT+FF Sbjct: 5 LLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFF 64 Query: 68 VATLALTYLGSYKSAPSVGVLGAAPAPAASAPAASQTPAASA 109 + +L L + S K+ APA + PA Sbjct: 65 IISLVLGNINSNKTNKGSEWEN-LSAPAKTEQTQPAAPAKPT 105
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 29.9 bits (67), Expect = 0.013 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 10/96 (10%) Query: 138 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 190 Y GW+ F+ A Y+++ + G + Sbjct: 29 YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85 Query: 191 GSQQHGFFAGHGVNFLSWNWLPLLPVFVIYFISGIA 226 GS ++G + GV + P+ IY G Sbjct: 86 GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121
>PF01540#Adhesin lipoprotein Length = 475 Score = 28.9 bits (64), Expect = 0.015 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 11 RTGRALADLLLKQQDFEVTALVRRPDFA--LPGAKVVVADLTGDFSSAFN-GITHAIYAA 67 + G+ AD LKQ + L + PD++ L +A+ T F A + G AI + Sbjct: 35 KNGKEKADAALKQANALAEELKKNPDYSKILETLNKEIAEATKSFKEAGSYGDYPAIISK 94 Query: 68 GSAESEGATEEEQIDRDAVARAAD 91 SA E A E+Q A + AD Sbjct: 95 LSAAVENAKSEQQKVDQANKKIAD 118
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 745 bits (1925), Expect = 0.0 Identities = 279/1104 (25%), Positives = 502/1104 (45%), Gaps = 100/1104 (9%) Query: 3 LARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLPGASPETVATS 62 +A FI RP+ +LA+ + +AG A ++LPV+ P + P + V A+ PGA +TV + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VTSPLERHLGSIADVAEMTSMS-SVGNARIVLQFNLNRDIDGAARDVQAAINAARADLPA 121 VT +E+++ I ++ M+S S S G+ I L F D D A VQ + A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 122 SLKSNPTYRKVNPADSPIMVVSLTS--KTASPAKLYDAASTVLQQSLSQIDGIGQVSLSG 179 ++ + S +MV S + + D ++ ++ +LS+++G+G V L G Sbjct: 121 EVQ-QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 SANPAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGP------HRYQLYTND 233 + A+R+ L+ L Y + DV L N G + P + Sbjct: 180 AQY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 QATKAAQYKDLVI-AYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLVILYRSPGAN 292 + ++ + + + + V L DV+ V E+ + +NG+ A + + + GAN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 IIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVSLVVMVVFLF 352 +DT + +KA L +L P ++V D + ++ S+ + TL A+ LV +V++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDAIVVLENIAR 412 L+N RATLIP++AVP+ ++GTF + G+S+N L++ +++A G +VDDAIVV+EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HI-ENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFREFALTLSLAI 471 + E+ P +A ++ ++ I++ L AVF+P+ GG G ++R+F++T+ A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 AVSLVVSLTLTPMMCARLLPEAHAPRDE--GRVARWLERGFEWMQRGYERTLSWALRHPF 529 A+S++V+L LTP +CA LL A E G W F+ Y ++ L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 530 TILMTLVATIALNIALYIVVPKGFFPQQDTGLMIGGIQADQTTSFQAMKLRFTEMMRIIR 589 L+ +A + L++ +P F P++D G+ + IQ + + + ++ Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 590 ANP-----NVANVAGFT-GGAQTNSGFMFVALKDKPQR---KLSADQVIQQLRPQLAEVA 640 N +V V GF+ G N+G FV+LK +R + SA+ VI + + +L ++ Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 641 GARTFLQAAQDIRAGGRQSNAQYQFT-LLGDSTAELYKWGP-ILTEALQKRPELADVNSD 698 I G + ++ G L + +L A Q L V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 699 QQQGGLEAMVTIDRATAARLGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPQY 758 + + + +D+ A LG+ + I+ T+ A G V+ + + ++ ++ Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 759 WQSPEMLKQIYISTSGGSASGVQTTNAAAGTYVATTARASTAGAAAQSAAAIAADSARNQ 818 PE + ++Y+ ++ G V + +V + R R Sbjct: 779 RMLPEDVDKLYVRSANGEM--VPFSAFTTSHWVYGSPRLE-----------------RYN 819 Query: 819 ALNSIASSG--KSSASSGAAVSTSKSTMVPLSAIASFGPSTTPLAVNHQGLFVATTISFN 876 L S+ G SSG A++ ++ Sbjct: 820 GLPSMEIQGEAAPGTSSGDAMALMENLAS------------------------------K 849 Query: 877 LPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAALAAVYIVL 936 LP G+ G + P L+ + V++ L Sbjct: 850 LPAGIGY------------------DWTGMSYQERLSG----NQAPALVAISFVVVFLCL 887 Query: 937 GILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKKNAIMMVDF 996 LYES+ PV+++ +P VG LL LF + + ++G++ IG+ KNAI++V+F Sbjct: 888 AALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEF 947 Query: 997 AIDA-SRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAEMRAPLGIAIA 1055 A D ++GK +A A +R RPI+MT++A +LG LPLA G G+ + +GI + Sbjct: 948 AKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVM 1007 Query: 1056 GGLIVSQMLTLYTTPVVYLYMDRL 1079 GG++ + +L ++ PV ++ + R Sbjct: 1008 GGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 96.1 bits (239), Expect = 4e-22 Identities = 83/503 (16%), Positives = 167/503 (33%), Gaps = 25/503 (4%) Query: 2 NLARPFITRPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTILVQASLP-GASPETVA 60 N + L+ I + F++LP S LP+ D L LP GA+ E Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 61 TSVTSPLERHLGSIAD----VAEMTSMSSVGNAR----IVLQFNLNRDIDGAARDVQAAI 112 + + +L + V + S G A+ + + +G +A I Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVI 647 Query: 113 NAARADLPASLKSNPTYRKVNPADSPIMVVSLTSKT-----ASPAKLYDAASTVLQQSLS 167 + A+ +L + + L A + +L + Sbjct: 648 HRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 168 QIDGIGQVSLSGSAN-PAVRVELEPQALFHYGIGLEDVRAALASANANSPKGAIEAGPHR 226 + V +G + ++E++ + G+ L D+ +++A + Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 227 YQLYT---NDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGLMNGERAVLV 283 +LY L + N V S ++ V L NG ++ + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW-VYGSPRLERYNGLPSMEI 826 Query: 284 ILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADTEHTLIIAVS 343 +PG + D A + L + LPA I S R S + I+ Sbjct: 827 QGEAAPGTSSGD----AMALMENLASKLPAGIGYD-WTGMSYQERLSGNQAPALVAISFV 881 Query: 344 LVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGFVVDDA 403 +V + + +W + + VP+ IVG A L + ++ L+ G +A Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 404 IVVLENI-ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGIVGRLFRE 462 I+++E + G ++A R +L SL+ + LP+ + G Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 463 FALTLSLAIAVSLVVSLTLTPMM 485 + + + + ++++ P+ Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVF 1024 Score = 59.9 bits (145), Expect = 5e-11 Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 4/225 (1%) Query: 870 ATTISFNLPPGVSLSKATQVIYQTMAEV--GVPPTIQGS-FQGTAQAFQESLKDQPILIL 926 A + L G + + I +AE+ P ++ T Q S+ + + Sbjct: 286 AAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLF 345 Query: 927 AALAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIV 986 A+ V++V+ + ++ + +P +G L F + + + G++L IG++ Sbjct: 346 EAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLL 405 Query: 987 KKNAIMMVDFAIDASRQGKSSF-DAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045 +AI++V+ + K +A ++ ++ M +P+AF G Sbjct: 406 VDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGA 465 Query: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLRVWAEKRRDRR 1090 + I I + +S ++ L TP + + + Sbjct: 466 IYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 802 bits (2072), Expect = 0.0 Identities = 284/1035 (27%), Positives = 499/1035 (48%), Gaps = 31/1035 (2%) Query: 4 SRVFILRPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQVQTFYPGASPEVMTSSV 63 + FI RP+ +L +M+AG +A+ LP+A P + P + V YPGA + + +V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TAPLERQFGQMPSLNQMSSQS-SAGASVITLQFSLDLPLDIAEQEVQAAINAAGNLLPSD 122 T +E+ + +L MSS S SAG+ ITL F DIA+ +VQ + A LLP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 LPAPPIYAKVNPADAPVITLAVTSKTLPLTQ--VQDLADTRLAMKISQVSGVGLVSLSGG 180 + I + + ++ S TQ + D + + +S+++GVG V L G Sbjct: 122 VQQQGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 NRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNFDGP------TRAYTINANDQ 234 A+RI + L Y L D+ + N G G +I A + Sbjct: 181 QY-AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 235 LTSADQYNDAVV-AYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANV 293 + +++ + +G V L DVA++ G EN + A ++ +PA L ++ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 294 IQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFL 353 + T +KA L +LQ P + V D T ++ ++ +V L A+ LV LVMYLFL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 354 ANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENIARY 413 N+ AT+IP+++VP+ L+GT A++ G+S+N L++ + +A G +VDDAIV++EN+ R Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 414 -VEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472 +E+ EA K QI ++ + + L AV IP+ F G G ++ +F+IT+ + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 473 ISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLIERV----IERYGVALQWVLDRQR 528 +S +V+L L P +CA LL+ E H + G + Y ++ +L Sbjct: 480 LSVLVALILTPALCATLLK-PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 529 ATLVVAVLTLALTALLYVVIPKGFFPTQDTGVIQAITQAPQSVSYGAMAERQQALAAEIL 588 L++ L +A +L++ +P F P +D GV + Q P + + + L Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 589 KH--PDVVSLTSFIGVDGANITLNSGRMLINLKPRDERS---ESASDVIRSLQRQVANVT 643 K+ +V S+ + G + N+G ++LKP +ER+ SA VI + ++ + Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 644 GISLYMQPVQDLTIDSTVSPTQYQFMLTS---PNPDEFATWVPKLVDRLRKEPS-LADVA 699 + P I + T + F L D +L+ + P+ L V Sbjct: 659 DGFVI--PFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVR 716 Query: 700 TDLQNSGKSVYIEIDRTSAARFGITPATVDNALYDAYGQRIVSTIFTQSNQYRVILESEP 759 + +E+D+ A G++ + ++ + A G V+ + ++ ++++ Sbjct: 717 PNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADA 776 Query: 760 QMQHYTDSLNGIYLPSAGGGQVPLSAIATFRERPAPLLVSHLSQFPATTISFNLAPGASL 819 + + + ++ +Y+ SA G VP SA T + + P+ I APG S Sbjct: 777 KFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS 836 Query: 820 GEAVKAIDAAERELGLPASFQTRFQGAALAFQASLSNQLFLILAAIVTMYIVLGVLYESY 879 G+A+ ++ +L PA + G + + S + L+ + V +++ L LYES+ Sbjct: 837 GDAMALMENLASKL--PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894 Query: 880 IHPITILSTLPSAGVGALLALMITGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAERV 939 P++++ +P VG LLA + D+ ++G++ IG+ KNAI++++FA + Sbjct: 895 SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954 Query: 940 EGKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQ 999 EGK EA A +R RPILMT+LA +LG +PL + +GAGS + +GI + GG++ + Sbjct: 955 EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 1000 VLTLFTTPVIYLGFD 1014 +L +F PV ++ Sbjct: 1015 LLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 4e-08 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 16/149 (10%) Query: 84 AARGEMPVVLNALGTVTPLANV-TVRTQLSGYLQAVSFQEGQIVKKGDVLAQIDPRP--- 139 + G++ +V A G +T ++ + ++ + +EG+ V+KGDVL ++ Sbjct: 75 SVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEA 134 Query: 140 ----YQISLANAQGALARDEALLATARLDLKRYQTLVAQ---DSIAKQTADTQASLVKQY 192 Q SL A+ R + L + L+ L + +++++ SL+K+ Sbjct: 135 DTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE- 193 Query: 193 EGTVQIDRAAIDSAKLNLAYARITAPVSG 221 Q + L + A Sbjct: 194 ----QFSTWQNQKYQKELNLDKKRAERLT 218 Score = 38.3 bits (89), Expect = 5e-05 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 26/182 (14%) Query: 141 QISLANAQGALARDEALLAT--ARLDLKRYQTLVAQDSIAKQTADTQASLVKQY-EGTVQ 197 + ++ + L ++L+ + L A++ T + ++ + + T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 198 ID--RAAIDSAKLNLAYARITAPVSGRV-GLRQVDPGNYVTPSDT--------NGIVVIT 246 I + + + I APVS +V L+ G VT ++T + + V Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 247 QLQPMSVIFTTSEDNLPAILKQVGAGGKLSVTAYNRNNTTPLETGV-LDTLDNQIDTATG 305 +Q + F AI+K V A+ L V LD D G Sbjct: 371 LVQNKDIGFINVG--QNAIIK---------VEAFPYTRYGYLVGKVKNINLDAIEDQRLG 419 Query: 306 TV 307 V Sbjct: 420 LV 421
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.8 bits (80), Expect = 2e-04 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 30/126 (23%) Query: 1 MKIALFGATGMIGSRIAAEAARRGHQVTAL-------------SRNPAASGANVQAKAAD 47 MK + GA G IG ++ GHQV + +R + Q D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 48 LFDPASIA--------------AALAGQDVVASAYGPKQEEASKVVAVAKALVDGARKAG 93 L D + V S P S + +++G R Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLA--VRYSLENPHAYADSNLTGFLN-ILEGCRHNK 117 Query: 94 VKRVVV 99 ++ ++ Sbjct: 118 IQHLLY 123
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 32.4 bits (73), Expect = 0.007 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 562 FNLG-LDPDKAREFHDETLPKDSAKVAHFC--SMCGPHFCSMKITQDVREFAAQQGVSEN 618 F LG + P + R E P + + S CG H + +T + E Q ++ Sbjct: 265 FTLGDMQPGEHRTITVEFCPLKRGRATNIATVSYCGGHKNTASVTTVINEPCVQVSIAGA 324 Query: 619 D 619 D Sbjct: 325 D 325
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.8 bits (106), Expect = 3e-07 Identities = 60/266 (22%), Positives = 95/266 (35%), Gaps = 11/266 (4%) Query: 66 YATGMLVLAPLG----DRFDRRTLILLQIAGLSAALVVAAAAPTLGVLAAASLAIGILAT 121 YA AP+ DRF RR ++L+ +AG + + A AP L VL + GI Sbjct: 52 YALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGA 111 Query: 122 IAQQAVPFAAEIAPPAARGQAVGTVMSGLLLGILLARTAAGFVAEYFGWRAVFAASVAAL 181 A + A+I R + G + + G++ G + + FAA AAL Sbjct: 112 TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAA--AAL 169 Query: 182 AALAAVIVA-RLPRSSPTSTLPYGKLLASMWQLVRELRGLR--EASMTGGAIFAAFSAFW 238 L + LP S P + + R RG+ A M I Sbjct: 170 NGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVP 229 Query: 239 PVLTLLLAGAPFHLGPQAAGL-FGIVGAAGALAAPY-AGRFADKRGPRAIISLAIALIAA 296 L ++ FH G+ G +LA G A + G R + L + Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 297 SFAIFALSGASLIGLVIGVIVLDVGV 322 + + A + + I V++ G+ Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGI 315
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.8 bits (165), Expect = 2e-15 Identities = 74/265 (27%), Positives = 119/265 (44%), Gaps = 18/265 (6%) Query: 1 MADHSIKGKTVIIAGGAKNLGGLIARDLAAQGAQAVAIHYNSAASKGAAETVAAIEAAGA 60 M I+GK I G A+ +G +AR LA+QGA A+ YN + + V++++A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYN---PEKLEKVVSSLKAEAR 57 Query: 61 RAVALQADLTAAGAVEKLFVDTVAAIGRPDIAINTVGKVLKKPFVEITEAEYDEMAAVNS 120 A A AD+ + A++++ +G DI +N G + +++ E++ +VNS Sbjct: 58 HAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNS 117 Query: 121 KTAFFFLKEAGRHVND--NGKIVTLVTSLLGAFTPFYAAYAGMKAPVEHFTRAAAKEFGA 178 F + +++ D +G IVT+ ++ G AAYA KA FT+ E Sbjct: 118 TGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAE 177 Query: 179 RGISVTAVGPGPMDTPFFYPAEGADAVAYHKTAAALSPFSKTGL--------TDIGDVVP 230 I V PG +T + + A +L F KTG+ +DI D V Sbjct: 178 YNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETF-KTGIPLKKLAKPSDIADAVL 236 Query: 231 FIRHLVSD-GWWITGQTILINGGYT 254 F LVS IT + ++GG T Sbjct: 237 F---LVSGQAGHITMHNLCVDGGAT 258
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.1 bits (106), Expect = 6e-07 Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 4/246 (1%) Query: 204 EPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSASSAVAAPAAAGSGPAASAPAAPV 263 P+ + + A PPA P+ + S + A A Sbjct: 1007 VPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR 1066 Query: 264 RHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPAPASAPTPASAPTPTPASAPTPA 323 A A ++ A A + + T + A A T P Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 324 SIPAPAPASAPASTPAPASAPAPAPTTNPASSIAPAAAPFASAIPPARAEKFAPAVTATT 383 S +P + P A PT N + + P A++ + V Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP---AKETSSNVEQPV 1183 Query: 384 AGSASTPASAAAPSSPSSPWLPPLLPPLLSPDAPSPPADTARTAPLAPAASPATAAAAAT 443 S + + +P + P P ++ ++ + P + R + + + A ++ Sbjct: 1184 TESTTVNTGNSVVENPENT-TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Query: 444 NATATA 449 + + A Sbjct: 1243 DRSTVA 1248 Score = 40.8 bits (95), Expect = 1e-05 Identities = 32/219 (14%), Positives = 59/219 (26%), Gaps = 11/219 (5%) Query: 182 DPTRRDKAAVKAAEKERVAPLPEPAETAEGAPMKLKTPAAPTPPAAPVPASSAAPGTSAS 241 + T +++ K A K V + E A+ +T T A V A + Sbjct: 1060 ETTAQNREVAKEA-KSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 242 SAVAAPAAAGSGPAASAPAAPVRHAAPAPASATAAASAPTAASAPAPTPASAPAPASTPA 301 + + P A PA + PT + + A PA Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPAR------ENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 302 PASAPTPASAPTPTPASAPTPASIPAPAPASAPASTPAPASAPAPAPTTNPASSIAPAAA 361 ++ T + + + P + + P S + P S+ Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Query: 362 ---PFASAIPPARAEKFAPAVTATTAGSASTPASAAAPS 397 P ++ + T + + A A A Sbjct: 1233 NVEPATTSSNDRSTVALCDLTSTNT-NAVLSDARAKAQF 1270
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 33.6 bits (77), Expect = 0.002 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Query: 571 SPAQYAQVTSMNPDEWRAELALHAELFDKLSARLPDALAETKARIEKRL 619 P + + + S P E + +A L D+ S P+ + E + +EK+L Sbjct: 148 DPQKASFILSSLPTEVQTNVARRIALMDRTS---PEVVREVERVLEKKL 193
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 30.2 bits (68), Expect = 0.019 Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 19/128 (14%) Query: 390 LKAGEEADARTPAA---LRRGRKLVVQIGE----------TFGEKNAPMFVEQLDALRLA 436 L+ E P A L G I + F EKN + ++LD L Sbjct: 127 LEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKE 186 Query: 437 DKLALDLAPVMVYGDDVTHVVTEEGIANLLMCRDADEREHAIRGVAGYTEIGRGRDRRLV 496 K + P + +VT EG + I + E + + LV Sbjct: 187 SKDKFNKIP-----AEKKLIVTSEGAFKYF-SKAYGVPSAYIWEINTEEEGTPEQIKTLV 240 Query: 497 ERLRERGV 504 E+LR+ V Sbjct: 241 EKLRQTKV 248
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.9 bits (70), Expect = 0.009 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 4/135 (2%) Query: 254 AQTSGNVLAIASLMGIAGAALASYLGGRAARRAMLLAGYGILAASLVALAAAPNANGYTL 313 G +LA+ +LM A A + L R RR +LL A +A AP + Sbjct: 42 TAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYI 101 Query: 314 A--IFGFKFAWTFVLPFMLASVAAVDATGRLIATLNLVIGSGLAAGPLAAGLMLDGGGTL 371 + G A V +A + D R ++ G G+ AGP+ GLM GG + Sbjct: 102 GRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM--GGFSP 159 Query: 372 RALFSIAAAVSLVSL 386 A F AAA++ ++ Sbjct: 160 HAPFFAAAALNGLNF 174
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 67.1 bits (164), Expect = 1e-14 Identities = 72/323 (22%), Positives = 118/323 (36%), Gaps = 37/323 (11%) Query: 20 AATLAALSGPAHAQSTLTLYGVADAGVQYLSRADGRHAAWRLQN-----YGILPSQLGIK 74 A TLAAL P A + +TLYG AGV SR+ + A L S++G K Sbjct: 7 ALTLAAL--PVAAMADVTLYGTIKAGV-ETSRSVAHNGAQAASVETGTGIVDLGSKIGFK 63 Query: 75 GEEDLGGGWRARFQLEQGINLNDGTATVPGYAFFRGAYVGMGGPAGTVTLGRQFSTLFDK 134 G+EDLG G +A +Q+EQ ++ + R +++G+ G G + +GR S L D Sbjct: 64 GQEDLGNGLKAIWQVEQKASIAGTDSGW----GNRQSFIGLKGGFGKLRVGRLNSVLKDT 119 Query: 135 TLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFDVEALAAMAGIAGNTRAGRV 194 +P S + + S+++ S FAG ++ A N AGR Sbjct: 120 GDI-NPWDSKSDYLGVNKIAEPEARLI-SVRYDSPEFAGL-SGSVQ----YALNDNAGRH 172 Query: 195 ------LELGGQFTSRGLSASAVLHRSH-GTAQGGADRSAQRRDIGTFAARYAFASLPLT 247 + + R H ++ R + + +AS+ + Sbjct: 173 NSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYASVAVQ 232 Query: 248 VHAGVQRLTGELDPARTIV-------WGGARYQASGRFGFAGGIYHTDSPTPQVGHPTLF 300 ++T V +G + S GF G T+ Sbjct: 233 QQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNN----DYDQV 288 Query: 301 IASTTCSLSKRTVAYLNLGYAKN 323 + SKRT A ++ G+ + Sbjct: 289 VVGAEYDFSKRTSALVSAGWLQE 311
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.008 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 12/112 (10%) Query: 58 EAAAAGVEASLSKSDLPSPQEIRDILDQYVIGQERAKKILAVAVYNHYKRL-------KH 110 +A+ G L K E+ I+ + + +R L + + + Sbjct: 92 KASEKGAYDYLPKP--FDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEI 149 Query: 111 LDKKDDVELSKSNILLIGPTGSGKTLLAQTLARL---LNVPFVIADATTLTE 159 + + +++ G +G+GK L+A+ L N PFV + + Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR 201
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 40.4 bits (94), Expect = 3e-05 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 15/192 (7%) Query: 92 KVLVEGLQRAQALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKI 151 L + L+ A S + + E A A+ E ++ K + Sbjct: 193 AELEKALEGAMNFSTADSAKIKTLEAE-KAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 152 PPEILTSLSGIDEAGRLADTIAAHLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQ 211 E + E + + + + + LE A LE + +L Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE---KAALEAEKADLEHQSQVLN 308 Query: 212 VEKRIRGRVKRQMEKSQREYYLNEQVKAIQKELGEGEEGAD--LEELEKRINAARMPKEA 269 R ++R ++ S+ +Q++A ++L E + ++ + L + ++A+R EA Sbjct: 309 AN---RQSLRRDLDASREAK---KQLEAEHQKLEEQNKISEASRQSLRRDLDASR---EA 359 Query: 270 KKKADAELKKLK 281 KK+ +AE +KL+ Sbjct: 360 KKQLEAEHQKLE 371
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 6e-05 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 28/198 (14%) Query: 1 MNRSGSRAALLIGVALIAAACHRKEAAPSAPRPVVAVPAQADGAAAAVSLPGEIQPRYAT 60 + SR L+ ++ + +VA A+G EI+P Sbjct: 49 IETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVAT---ANGKLTHSGRSKEIKP---- 101 Query: 61 PLSFRIAGKLVER-KVRLGDIVKKGQVVALLDTSDVARNAASAQAQLDAATHALTFAQQQ 119 I +V+ V+ G+ V+KG V+ L + Q+ L A +Q Sbjct: 102 -----IENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQAR-----LEQT 151 Query: 120 RERDRAQARENLIAPAQLEQTENAYASARAQRDQAAQQLA----------LAKNQLQYAT 169 R + +++ E P E + + + L + +L Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 170 LVADHAGYITAEQADTGQ 187 A+ + Sbjct: 212 KRAERLTVLARINRYENL 229 Score = 34.8 bits (80), Expect = 5e-04 Identities = 10/71 (14%), Positives = 27/71 (38%) Query: 100 ASAQAQLDAATHALTFAQQQRERDRAQARENLIAPAQLEQTENAYASARAQRDQAAQQLA 159 + A+++ + + + + + + IA + + EN Y A + QL Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 160 LAKNQLQYATL 170 ++++ A Sbjct: 277 QIESEILSAKE 287
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.6 bits (149), Expect = 6e-14 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 10/203 (4%) Query: 11 RLTREQSKDLTRERLLSAAHAIFTKKGYVAASVEDIASAAGYTRGAFYSNFRSKAELLIE 70 R T++++++ TR+ +L A +F+++G + S+ +IA AAG TRGA Y +F+ K++L E Sbjct: 3 RKTKQEAQE-TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 71 LLKRDHEEAEADLQKIFE--SGGTREQMEA---HALEYYSQFFRNNPAFLLWGEAKLQAT 125 + + + G + H LE R + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 126 RDAKFRARFNEFVKEKRDRFTHYILTFAERVGTPLLLPADVLALGLMSLCDGVQSYHAAD 185 A + E DR + E P L A+ + G+ Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 186 PRHVTGDAAQQVLAGFFARVVLA 208 P+ D ++ A + ++L Sbjct: 182 PQSF--DLKKE--ARDYVAILLE 200
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.0 bits (70), Expect = 0.009 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 2/139 (1%) Query: 244 IGVYGFVLWLPSIVKNGSALGMVATGWLSALP-YLAATIAMLAASWASDRLGSRKGFVWP 302 V GFV +P ++K+ L G + P ++ I DR G Sbjct: 270 GTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIG 329 Query: 303 FLLIGAAAFAASYTLGSTHFWLSYALLVVAGAAMYAPYGPFFAIVPELLPKNVAGGAMAL 362 + + AS+ L +T ++++ ++ V G + IV L + AG M+L Sbjct: 330 VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKT-VISTIVSSSLKQQEAGAGMSL 388 Query: 363 INSMGALGSFVGSYAVGYL 381 +N L G VG L Sbjct: 389 LNFTSFLSEGTGIAIVGGL 407 Score = 30.6 bits (69), Expect = 0.013 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%) Query: 35 AAAGINQDLGISKGLSSLIGALFFLGYFFFQIPGAIYAERRSVKTLVFWSLVLWGACASL 94 + I D ++ + F L + +++ +K L+ + +++ S+ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCF-GSV 94 Query: 95 TGVV--SNIPSLMAIRFLLGVVEAAVMPAML-IFISNWFTKRERSRANTFLILGNPVTVL 151 G V S L+ RF+ G AA PA++ + ++ + K R +A + + Sbjct: 95 IGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEG 153 Query: 152 WMSVVSGYLVHEFGWRHMFV 171 + G + H W ++ + Sbjct: 154 VGPAIGGMIAHYIHWSYLLL 173 Score = 30.6 bits (69), Expect = 0.014 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 268 TGWLSALPYLAATIAMLAASWASDRLGSRKGFVWPFLLIGAAAFAASYTLGSTHF-WLSY 326 T W++ L +I SD+LG ++ ++ ++ + +G + F L Sbjct: 51 TNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGF--VGHSFFSLLIM 108 Query: 327 ALLVVA-GAAMYAPYGPFFAIVPELLPKNVAGGAMALINSMGALGSFVG 374 A + GAA + +V +PK G A LI S+ A+G VG Sbjct: 109 ARFIQGAGAAAFPAL--VMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 34.6 bits (79), Expect = 3e-04 Identities = 15/107 (14%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 12 ATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQMARGL-KRGRN 70 ++ ++A+ AG + ++ + ++++ S E + R Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 71 RLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERR 117 L+ +L + +T ++ + C +G M ++ A L +E Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESY 138
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 56.1 bits (135), Expect = 2e-11 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 10/201 (4%) Query: 17 ASPLRILFGLTQPLLYLFVLGAALRSGTYAEIGG--YQAYIFPGVVGLSLM----FTAIS 70 A+ +L L +PL+YLF LGA L +GG Y A++ G+V S M F I Sbjct: 30 AALASLLGHLAEPLIYLFGLGAGL-GVMVGRVGGVSYTAFLAAGMVATSAMTAATFETIY 88 Query: 71 AAVGIVHDRQTGLLNALLVSPVRRVDIALGKIGAGALLAWLQALLLLPFSPAIGIGLTAP 130 AA G + ++T A+L + +R DI LG++ A A L + + A+G Sbjct: 89 AAFGRMEGQRT--WEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGY-TQWL 145 Query: 131 RLALLVAAMAFAALAFSALGLALALPFRSVIVFPVVSNTLLLPMFFLSGGLYPLDLAPDW 190 L + +A LAF++LG+ + S F ++ P+ FLSG ++P+D P Sbjct: 146 SLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIV 205 Query: 191 IRAAAAFDPAAYGVDLMRGVL 211 + AA F P ++ +DL+R ++ Sbjct: 206 FQTAARFLPLSHSIDLIRPIM 226
>PF07675#Cleaved Adhesin Length = 1358 Score = 30.8 bits (69), Expect = 0.008 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Query: 181 DYVIADPEPRGGRLAME-RGVTWAARRHDHRF--GAHYPWTLRLTPPQDGAPASVEIDT 236 DY I +PEP G++ + G AR D F G Y +T+R DG VE D+ Sbjct: 472 DYCITNPEPASGKMWIAGDGGNQPARYDDFAFEAGKKYTFTMRRAGMGDGTDMEVEDDS 530
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 787 bits (2034), Expect = 0.0 Identities = 292/873 (33%), Positives = 450/873 (51%), Gaps = 47/873 (5%) Query: 11 FSRIRVTMLAAALTALSATAR----GQQALEFDPAFLELGGGQGGADLSVYATSNRVLPG 66 + R+ L A A L F+P FL Q ADLS + + PG Sbjct: 18 IRKHRLAGFFVRLFVACAFAAQAPLSSAELYFNPRFLA-DDPQAVADLSRFENGQELPPG 76 Query: 67 VYPISVFVNGEAIERRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGED 126 Y + +++N + RD+TF D + +PCL+ G++ A+ + + +D Sbjct: 77 TYRVDIYLNNGYMATRDVTFN---TGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADD 133 Query: 127 ACVDIADSVPHARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDAALLDYQLSA 186 ACV + + A + D Q RLN+T+PQA + RARG + P WD GI+A LL+Y S Sbjct: 134 ACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSG 193 Query: 187 AQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGL-----DGRNRFQIVNTFV 241 + Y L+ +N+GAWRL +++ +N++Q +NT++ Sbjct: 194 NSVQNR---IGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWL 250 Query: 242 QRDIAGWNSRLTAGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQ 301 +RDI SRLT G+G T +IFDG F G QL +D+ MLPDS +G+AP +HG+A+ AQ Sbjct: 251 ERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQ 310 Query: 302 VTIRQNGFVIYSTYVPPGPFTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLR 361 VTI+QNG+ IY++ VPPGPFTI+D+Y +SG+L+VTI EADG FT PYS+VP+L R Sbjct: 311 VTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQR 370 Query: 362 DGSWRYNVTAGQYR-DGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGIGKN 420 +G RY++TAG+YR P F +TL GL +++YGG A Y++ GIGKN Sbjct: 371 EGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKN 430 Query: 421 LGSIGAVSLDVTHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRS 480 +G++GA+S+D+T A S L D S G + R LY K++ GT+ +L+ YRYST+GY + Sbjct: 431 MGALGALSVDMTQANS--TLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFN 488 Query: 481 FADAVQLRDGSEPAAL------------------GAKRQRLEGTVNQRLGRLGSMYATVA 522 FAD R KR +L+ TV Q+LGR ++Y + + Sbjct: 489 FADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGS 548 Query: 523 VQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSGVPSSWN-VSLSLSMPLEVFFGG 581 QTYWG++ +Q G + + ++ L + +K + ++L++++P + Sbjct: 549 HQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRS 608 Query: 582 ARVRAPAGGSANVSYFVSRNNENHVNQQMTASGSSSEQ-RLNYSVGVAHS----SESDVS 636 A+ SY +S + + G+ E L+YSV ++ S + Sbjct: 609 DSKSQW--RHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGST 666 Query: 637 GSVSASYLAPFGRYDASIGSGRGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNV 696 G + +Y +G + Q + +GG+L H GV QPL +TV +V P Sbjct: 667 GYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGA 726 Query: 697 RGVRFEMHPGVSTDRAGEAVIPRLNPYRVNRIAVDQRRMPQDVEIRNPVSEVVPTRAAVV 756 + + E GV TD G AV+P YR NR+A+D + +V++ N V+ VVPTR A+V Sbjct: 727 KDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIV 786 Query: 757 QTHFDSVVGLRALFTLMRADGSFPPQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFV 816 + F + VG++ L TL + P GA ++ Q G+V +G+ +++G+P A G Sbjct: 787 RAEFKARVGIKLLMTL-THNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA-GKVQ 844 Query: 817 VRWGAARQNRCRVNYALPGKAAIGAYLAVEAIC 849 V+WG C NY LP ++ + A C Sbjct: 845 VKWGEEENAHCVANYQLPPESQQQLLTQLSAEC 877
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 50.3 bits (119), Expect = 3e-08 Identities = 52/159 (32%), Positives = 79/159 (49%) Query: 873 ATGNNASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTALGS 932 A G NASA G S A GA A A+ + A GA S A+G S A G + A GD + G+ Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 933 NAVASGVGSVATGAGSVASGANSSAYGTGSNATGAGSVAIGQGATASGSNSVALGTGSVA 992 + A G S + + + + ++A + ++ A+ S+A+G S Sbjct: 120 ASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKT 179 Query: 993 SEDNTVSVGSAGSERRITNVAAGVNATDAVNVGQLNSAV 1031 +N+VS+G R++T++AAG TDAVNV QL + Sbjct: 180 DRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEI 218 Score = 39.9 bits (92), Expect = 5e-05 Identities = 79/305 (25%), Positives = 124/305 (40%), Gaps = 13/305 (4%) Query: 439 ASGDNATASGTNSTANGTNSTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGT 498 A G NA+A G +S A G + A+ + A G + A+G NS A G S A G ++ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 499 NSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDN--STASGTNA 556 STA D A G AS T + A G +S A NS A G +S + ++ S A G + Sbjct: 120 ASTAQKD-GVAIGARAS-TSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRS 177 Query: 557 SASGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASATGENSTATGTDSTASG 616 ENS + G +S A GT T + + A + ++T Sbjct: 178 KTDRENSVSIGHESLNRQLTHLAAGTKDTDAVN---------VAQLKKEIEKTQENTNKR 228 Query: 617 SNSTANGTNSTASGDNSTASGTNASATGDNSTASGTNASATGENSTATGTDSTASGSNST 676 S N+ A +S+ G + T S + NA + + + SNS Sbjct: 229 SAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSV 288 Query: 677 ANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGANSTASGDNSTASGT 736 A T TA ++ + T E++ ++ AS + + ++ T NS T Sbjct: 289 ARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSKSSHTLKTANSYTDVT 348 Query: 737 NASAT 741 +++T Sbjct: 349 VSNST 353 Score = 39.5 bits (91), Expect = 6e-05 Identities = 81/333 (24%), Positives = 125/333 (37%), Gaps = 9/333 (2%) Query: 444 ATASGTNSTANGTNSTASGDNSTASGTNASASGENSTATGTDSTASGSNSTANGTNSTAS 503 A A + N T S + A G A G +++A G +S A G + A+ Sbjct: 23 AFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAA 82 Query: 504 GDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGDNSTASGTNASASGENS 563 + A G + ATG NS A G S A G ++ G STA D A G AS S + Sbjct: 83 KGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKD-GVAIGARASTS-DTG 140 Query: 564 TATGTDSTASGSNSTANGTNSTASGDN--STASGTNASATGENSTATGTDSTASGSNSTA 621 A G +S A NS A G +S + ++ S A G + ENS + G +S A Sbjct: 141 VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLA 200 Query: 622 NGTNST-----ASGDNSTASGTNASATGDNSTASGTNASATGENSTATGTDSTASGSNST 676 GT T A + + NA A ++S+ G + + S S Sbjct: 201 AGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSA 260 Query: 677 ANGTNSTASGDNSTASGTNASATGENSTATGTDSTASGSNSTANGANSTASGDNSTASGT 736 N+ + N + NS A T TA ++ + +++ Sbjct: 261 ETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSA 320 Query: 737 NASATGENSTATGTDSTASGSNSTANGTNSTAS 769 A A+ + + T +NS + T S ++ Sbjct: 321 EALASANVYADSKSSHTLKTANSYTDVTVSNST 353 Score = 39.5 bits (91), Expect = 6e-05 Identities = 86/340 (25%), Positives = 130/340 (38%), Gaps = 13/340 (3%) Query: 628 ASGDNSTASGTNASATGDNSTASGTNASATGENSTATGTDSTASGSNSTANGTNSTASGD 687 A + + T + + A G A G +++A G +S A G + A+ Sbjct: 25 ADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKG 84 Query: 688 NSTASGTNASATGENSTATGTDSTASGSNSTANGANSTASGDNSTASGTNASATGENSTA 747 + A G + ATG NS A G S A G ++ GA STA D A G AS T + A Sbjct: 85 AAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKD-GVAIGARAS-TSDTGVA 142 Query: 748 TGTDSTASGSNSTANGTNSTASGNN--STASGTNASATGENSTATGTDSAASGTNSTANG 805 G +S A NS A G +S + N+ S A G + ENS + G +S A G Sbjct: 143 VGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202 Query: 806 TNSTASGDNSTASGTNASATGENSTATGTASTASGSNSTANGANSTASGAGATATGENAA 865 T T + + A + +T S AN+ A ++ G Sbjct: 203 TKDTDAVN---------VAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANN 253 Query: 866 ATGAGATATGNNASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGD 925 T + + T NA + + N + NS A TA + +S + A + Sbjct: 254 YTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTLETAEE 313 Query: 926 GSTALGSNAVASGVGSVATGAGSVASGANSSAYGTGSNAT 965 + + A+AS + + ANS T SN+T Sbjct: 314 HANKKSAEALASANVYADSKSSHTLKTANSYTDVTVSNST 353 Score = 37.2 bits (85), Expect = 4e-04 Identities = 102/425 (24%), Positives = 169/425 (39%), Gaps = 39/425 (9%) Query: 691 ASGTNASATGENSTATGTDSTASGSNSTANGANSTASGDNSTASGTNASATGENSTATGT 750 A G NASA G +S A G + A+ + A GA S A+G NS A G + A G+++ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 751 DSTASGSNSTANGTNSTASGNNSTASGTNASATGENSTATGTDSAASGTNSTANGTNSTA 810 STA ST+ + A G N+ A +NS A G S + AN S A Sbjct: 120 ASTAQKDGVAIGARASTS--DTGVAVGFNSKADAKNSVAIGHSSHVA-----ANHGYSIA 172 Query: 811 SGDNSTASGTNASATGENSTATGTASTASGSNSTANGANSTASGAGATATGENAAATGAG 870 GD S N+ + G S A+G+ T + N T EN A Sbjct: 173 IGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDT-DAVNVAQLKKEIEKTQENTNKRSAE 231 Query: 871 ATATGNNASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTAL 930 A N + + +SS G AN N +S ++ +A E+ A + D Sbjct: 232 LLANANAYADNKSSSVLGIAN----------NYTDSKSAETLENARKEAFAQSKDVLNMA 281 Query: 931 GSNAVASGVGSVATGAGSVASGANSSAYGTGSNATGAGSVAIGQGATASGSNSVALGTGS 990 +++ + ++ T S A ++ +A + A+ + S S + Sbjct: 282 KAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSKSSHTLKTA 341 Query: 991 VASEDNTVSVGSAGSERRITNVAAGVNATDAVNVGQLNSAVSGIRNQMDGMQGQIDTLAR 1050 + D TVS + + R + + N++D + ++D Sbjct: 342 NSYTDVTVSNSTKKAIRESNQYT--------------DHKFRQLDNRLDKLDTRVD---- 383 Query: 1051 DAYSGIAAATALTMIPDVDPGKTLAVGIGTANFKGYQASALGATARITQNLKVKTGVSYS 1110 G+A++ AL + + G ++ QA A+G+ R+ +N+ +K GV+Y+ Sbjct: 384 ---KGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNENVALKAGVAYA 440 Query: 1111 GSNYV 1115 GS+ V Sbjct: 441 GSSDV 445 Score = 35.3 bits (80), Expect = 0.001 Identities = 40/119 (33%), Positives = 53/119 (44%) Query: 877 NASASGTSSTAGGANAIASGENSTANGANSTASGNGSSAFGESAAAAGDGSTALGSNAVA 936 + SA+ S+ A A + N S N A G A G NA A Sbjct: 8 SVSAALISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASA 67 Query: 937 SGVGSVATGAGSVASGANSSAYGTGSNATGAGSVAIGQGATASGSNSVALGTGSVASED 995 G+ S+A GA + A+ + A G GS ATG SVAIG + A G ++V G S A +D Sbjct: 68 KGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKD 126
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 2e-07 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 10 KVVVADDHPIVLRAVTDYVNSLPGFHVVASVSSGDALLSAMREQEVNLVVTDFTMHQAND 69 ++VADD + + ++ G+ V S+ L + + +LVVTD M Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVM----P 58 Query: 70 DKDGLRLISHLMRAYERTPIIVFT 93 D++ L+ + +A P++V + Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMS 82
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 7e-18 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 1/146 (0%) Query: 854 TVLIAEDNLLNRSLLLDQLTTLGVRVIEAKNGEEALALLLKEPVDVVMTDIDMPMMDGFQ 913 T+L+A+D+ R++L L+ G V N + D+V+TD+ MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 914 LLAEMRRLGMTMPVYAVSASARPEDVAEGRARGFTDYLAKPVSLERLETVVRACCSAP-A 972 LL +++ +PV +SA + +G DYL KP L L ++ + P Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 973 GARADEDAQDELPGLPDVPPAYASAF 998 ED + L A + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIY 150
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 92.2 bits (229), Expect = 4e-23 Identities = 74/338 (21%), Positives = 117/338 (34%), Gaps = 52/338 (15%) Query: 10 ATAQSSVTLYGVIDEGIDYVNNSGGQHLW--RMRDGTYDGMYGSRWGLKGSEDLGGGLSA 67 A + VTLYG I G++ + + GT GS+ G KG EDLG GL A Sbjct: 15 VAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKA 74 Query: 68 LFKLEAGFSLENGQMRQGGREFGRQAYVGLSKTDLGTVTFGRQYDSVVDF--VQPVTAVG 125 ++++E S+ G RQ+++GL K G + GR + D + P + Sbjct: 75 IWQVEQKASIAGTDSGWG----NRQSFIGL-KGGFGKLRVGRLNSVLKDTGDINPWDSKS 129 Query: 126 QFGGPFVRGGDIDNTDNSFRVDNSIKYASPSFGGFTFGGMYSFTNSNAPGLGTTGMWSLG 185 + G I + S++Y SP F G + Y+ ++ + + G Sbjct: 130 DYLG----VNKIAEPEARL---ISVRYDSPEFAGLSGSVQYALNDNAGRHNSES--YHAG 180 Query: 186 AAYSHGGFNAGAAYFYAKNPAARFTDGNFIGNTTGAAIGASGPFSYVGAPRNERIMGIGA 245 Y +GGF Y ++ + + I + + A Sbjct: 181 FNYKNGGFFVQYGGAYKRH--HQVQENVNIEKYQIHRLVSG--------------YDNDA 224 Query: 246 DYAFGSATAGIDYTNTKFDDANGTTSSVTFSNYEVWGQY-----KVTPAATLGAAYVYTD 300 YA + A ++ S EV VTP +Y + Sbjct: 225 LYA---SVAVQQQDAKLVEENYSHN-----SQTEVAATLAYRFGNVTPR----VSYAHGF 272 Query: 301 GK-VNYNGARPKYHQVSLMGSYSVSKRTSFYAMAGFQQ 337 + Y QV + Y SKRTS AG+ Q Sbjct: 273 KGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQ 310
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 111 bits (280), Expect = 1e-30 Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 12/180 (6%) Query: 123 QYQVRF--LGGLAYRGYWADSACRDIAARYADAAGLGVIAVAPCNPSDVAAPLPERVELP 180 Q+ + R ++ R+ V+A AP +V L Sbjct: 163 QWTNNIGDAHTIGTRP-DNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTK---HFTLK 218 Query: 181 TDTLFAFDKGGFEDISADGRRQLGDLVASIKAKIFSINHLIVTGYTDRLGSDEHNARLSS 240 +D LF F+K + +G+ L L + + ++V GYTDR+GSD +N LS Sbjct: 219 SDVLFNFNK---ATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSE 275 Query: 241 ERARTVADYMIAEGIPAAKITAVGRGAADPVV--VCNNGEQ-PELIRCLQKNRRVEIRIK 297 RA++V DY+I++GIPA KI+A G G ++PV C+N +Q LI CL +RRVEI +K Sbjct: 276 RRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVK 335
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 47.7 bits (113), Expect = 9e-07 Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 2983 AGADTVTGSSGRDMLNGGAGNDTIVGNGGVDVLEGGGGNDMLVVNGDNIAHFTTPGSYWD 3042 G DT++G +G D L GG GND ++G G + L GG G+D V G+++A G + Sbjct: 762 KGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGN 821 Query: 3043 GGIMMGGEINTLQFDANN 3060 + + L + Sbjct: 822 DKLYGSEGADLLDGGEGD 839 Score = 45.3 bits (107), Expect = 4e-06 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 2984 GADTVTGSSGRDMLNGGAGNDTIVGNGGVDVLEGGGGNDML--------VVNGDNIAHFT 3035 G D + G+ G D L G GNDT+ G G D L GG GND L + GD F Sbjct: 745 GDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQ 804 Query: 3036 TPGSYWDGGIMMGGEIN 3052 G+ ++ GG+ N Sbjct: 805 VQGNSLAKNVLFGGKGN 821 Score = 39.6 bits (92), Expect = 2e-04 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 2986 DTVTGSSGRDMLNGGAGNDTIVGNGGVDVLEGGGGNDMLVVNGDNIAHFTTPG-SYWDGG 3044 D G+ G D++ G GND + G+ G D L GG G+D L N G +Y +GG Sbjct: 738 DIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGG 797 Score = 38.4 bits (89), Expect = 5e-04 Identities = 20/43 (46%), Positives = 23/43 (53%) Query: 2982 TAGADTVTGSSGRDMLNGGAGNDTIVGNGGVDVLEGGGGNDML 3024 T AD GS D+ +G G+D I GN G D L G GND L Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTL 767
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 274 bits (701), Expect = 5e-89 Identities = 94/439 (21%), Positives = 204/439 (46%), Gaps = 14/439 (3%) Query: 43 SALGLEEASIAPARRAAALIPTVMLALLIVLVLWATFFKIDIIAAGQGKVIPSTTVQQLS 102 + L L E ++ R A ++ L++ + + +++I+A GK+ S +++ Sbjct: 44 AHLELIETPVSRRPRLVAYF---IMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIK 100 Query: 103 TLEGGIVRELLVREGQIVKKGQPLVRLDPVVAQGAVTEQAATREGLMASIARLQAEADGK 162 +E IV+E++V+EG+ V+KG L++L + A+ + ++ R Q + Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSI 160 Query: 163 ----------ATPLYPAGLKPEIVSEEEHVRAQRAEALNSTIEVLQQQRAAKQAEAADYR 212 Y + E V + ++ + + K+AE Sbjct: 161 ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVL 220 Query: 213 GRIPQYVNNQHLLDDQIQRMLPLVGVGSVAPNEITNLQRERGNLAAQIITTREGAAQASA 272 RI +Y N + ++ L+ ++A + + + + ++ + Q + Sbjct: 221 ARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIES 280 Query: 273 QIAEASHKIEEKISTFRSEAREELARKQVQLQALEGTLSGKQDILDRTLIRSPVNGIVKT 332 +I A + + F++E ++L + + L L+ ++ ++IR+PV+ V+ Sbjct: 281 EILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQ 340 Query: 333 LYITTIGGVASPGKSVIDIVPTNDSLLIEARIQPQDIAYIRVGDDAKVRITAFDSGALGS 392 L + T GGV + ++++ IVP +D+L + A +Q +DI +I VG +A +++ AF G Sbjct: 341 LKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGY 400 Query: 393 LDAKVELISPDSQADERSGSLYYKVQVRTHSSVVATQVGDLNILPGMVADVDVITGRRTI 452 L KV+ I+ D+ D+R G L + V + + ++T ++ + GM ++ TG R++ Sbjct: 401 LVGKVKNINLDAIEDQRLG-LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSV 459 Query: 453 MSYILRPIVRGMSRAMSER 471 +SY+L P+ ++ ++ ER Sbjct: 460 ISYLLSPLEESVTESLRER 478
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 33.0 bits (75), Expect = 0.005 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 3/126 (2%) Query: 898 LAPDDADAVLLRAELALDTGDFDEALSQFERLREQRPDAPESYANLIPALAALERRDDAI 957 ++ D + + A +G +++A F+ L + L A+ + D AI Sbjct: 31 ISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 90 Query: 958 AALQRALELNSKHPGALNNGVQFYLRTQQYDKA---MELAQRYVGAHGELASAHTMCGLV 1014 + ++ K P + + L+ + +A + LAQ + E T + Sbjct: 91 HSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSM 150 Query: 1015 YHNLKA 1020 +K Sbjct: 151 LEAIKL 156
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 8e-18 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 13/163 (7%) Query: 3 IYLIEDDEIQAQYYQSMLVEHGWQVKLLLDGERAFREIQRMPPDLIILDRRLPDLDGLEV 62 I + +DD L G+ V++ + +R I DL++ D +PD + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 63 LMWVRKNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATET 122 L ++K ++PVL+++ + A E GA DY+ KP E + + RA Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI----GIIGRALAE 121 Query: 123 RTLSELIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLAR 165 R E + S EI +LAR Sbjct: 122 PKR---------RPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 92.2 bits (229), Expect = 4e-23 Identities = 92/377 (24%), Positives = 136/377 (36%), Gaps = 57/377 (15%) Query: 1 MKKLLIALPLAAAATTHAQSSVTLYGVLEDGVDYVSNVQGKHL----VQLASGV-TAGSR 55 MKK LIAL LAA A + VTLYG ++ GV+ +V V+ +G+ GS+ Sbjct: 1 MKKSLIALTLAALPVA-AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59 Query: 56 WGVRGTEDLGGGLSAIFRLESGFDINSGRLGSGLAFSRNAYVGVGDAKLGTLTLGRQWDS 115 G +G EDLG GL AI+++E I G G +R +++G+ G L +GR Sbjct: 60 IGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWG---NRQSFIGLK-GGFGKLRVGRLNSV 115 Query: 116 IVDY--VEPFTLNGNI-GGYYFAHPNDMDNTDNGFPISNAVKYRSPTIAGFTFGGLYAFG 172 + D + P+ + G A P IS V+Y SP AG + YA Sbjct: 116 LKDTGDINPWDSKSDYLGVNKIAEPEA-------RLIS--VRYDSPEFAGLSGSVQYALN 166 Query: 173 GQPGRFSDNATFSVGANYAAGPVGFGIGYLRINNPGVSTQGYQNYPGFTNAVYGNYLDAA 232 GR ++ ++ G NY G G Y+ + V Sbjct: 167 DNAGR-HNSESYHAGFNYKNGGFFVQYGGA-----------YKRHHQVQENVNIEKYQIH 214 Query: 233 RAQKVFGVGASYQVV---QWLKLLADFTNTNFQQGSAGHDATFQNYELSALVKPTPAVTI 289 R + A Y V Q L + ++ Q AT + + + A Sbjct: 215 RLVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVA--ATLAYRFGNVTPRVSYAHGF 272 Query: 290 GAGYTYTTGRDHATNAEPKYHQFNLSVEYALSKRTSVYAMGAFQKAAGDAPVAQIAGFNP 349 + T + Y Q + EY SKRTS + + Sbjct: 273 KGSFDATNYNND-------YDQVVVGAEYDFSKRTSALVSAGWLQEG-----------KG 314 Query: 350 SGNQKQAVGRAGIRHVF 366 G G+RH F Sbjct: 315 ESKFVSTAGGVGLRHKF 331
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 28.3 bits (63), Expect = 0.020 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 17/95 (17%) Query: 21 RSFLSELTRHLRG--FLRKRIPQFDADIEDLVQEILLAVHNARHTYRADEPLTAWVHAIA 78 SFLS + HL+ +L + +D ILLA+ RH + P T + Sbjct: 209 HSFLSHSSTHLKTSPWLSESFSFYD---------ILLALSWKRHQFSVTIPQTRIFQQLK 259 Query: 79 RYKLMDFFRTRARREALHDPLDDHTDI-FSEPDDD 112 + + D + +R D ++ + + FS D D Sbjct: 260 KLFVYDSLKKSSR-----DIIETYCQLNFSAGDLD 289
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 31.3 bits (70), Expect = 0.002 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 76 GLVQQLSLREIQFESLTEAMTTNSSSGMLVFHMMAALAQFERSLISERTCAGMAAARARG 135 GL Q L + E+ ++ ++ LV L + + S + AAR Sbjct: 75 GLAQ--GLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAAR--- 129 Query: 136 QILGRRPALNEKQRAQALKLLLTQ-PIKCVAKQFNVHPRTLQRLQKAHQAT 185 Q++G+ P ++ + ++ LL Q P+ Q VHP LQR+ AT Sbjct: 130 QVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGAT 180
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 49.1 bits (116), Expect = 1e-07 Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 14/153 (9%) Query: 1382 GPGADASGSNSTAVGGAASASGANATALGQASNASGNNSTALGQASSASGSGSTAVGQGA 1441 G A A G +S A+G A A+ A A+G S A+G NS A+G S A G + G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 1442 SASGDGSS------------AFGQGAIASGTNSTALG--AHSTASAPNSVAIGANSVASA 1487 +A DG + A G + A NS A+G +H A+ S+AIG S Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 1488 PNTVSFGSQGHERRLTNVAPGMDGTDAANMSQL 1520 N+VS G + R+LT++A G TDA N++QL Sbjct: 182 ENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 44.1 bits (103), Expect = 4e-06 Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 1088 GPAATASGASGIAIGDTANAAATGAVAIGQTAVATGGQAVSIGVANTASGDGAVAIGDPN 1147 G A+A G IAIG TA AA AVA+G ++ATG +V+IG + A GD AV G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 1148 VATGTGAVALGANNSANGQGAVALGNANVATGTGSLALGSTSTAAG--GGSIALGTNAIA 1205 A G VA+GA S + G VA+G + A S+A+G +S A G SIA+G + Sbjct: 122 TAQKDG-VAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKT 179 Query: 1206 NNANDVALGSGSV 1218 + N V++G S+ Sbjct: 180 DRENSVSIGHESL 192 Score = 39.9 bits (92), Expect = 8e-05 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 32/300 (10%) Query: 319 GGQSQAASAGAIAIGQSALATGGQAVSVGVGNTANGNGAVAIGDPNVATGTGAVALGANN 378 G + A +IAIG +A A G AV+VG G+ A G +VAIG + A G AV GA + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 379 TATGQGAVALGNADIATGQGSVALGNVSTAAGAGSVAFGSNAVANNTNDVALGSGSVTAA 438 TA G VA+G ++ + G VA G N+ A+ N VA+G S AA Sbjct: 122 TAQKDG---------------VAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAA 165 Query: 439 PNPTGSATIGGTTYSFEGTNPTSVVSVGAVGAERQITNVAAGQLTATSTDAVNGSQL--- 495 N S IG + T+ + VS+G RQ+T++AAG TDAVN +QL Sbjct: 166 -NHGYSIAIGDRS----KTDRENSVSIGHESLNRQLTHLAAG---TKDTDAVNVAQLKKE 217 Query: 496 -----YSTNQAINTLSTSTSTGLSSANSSIASLSTGLASSGNLASLSTSTSTGLSSANSS 550 +TN+ L + + + +SS+ ++ S + +L + + + Sbjct: 218 IEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDV 277 Query: 551 IASLSTSTSTGLSTTNSNIGSLSTGLSTTNSTVASLSTSTSTGLSSATSSITSLSTSTSS 610 + +++ TT + ++ T A + + + A++++ + S S+ + Sbjct: 278 LNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSKSSHT 337 Score = 38.0 bits (87), Expect = 3e-04 Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 4/130 (3%) Query: 308 AQALASNAIAIGGQSQAASAGAIAIGQSALATGGQAVSVGVGNTANGNGAVAIGDPNVAT 367 A A ++IAIG ++AA A+A+G ++ATG +V++G + A G+ AV G + A Sbjct: 65 ASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQ 124 Query: 368 GTGAVALGANNTATGQGAVALGNADIATGQGSVALGNVSTAAG--AGSVAFGSNAVANNT 425 G VA+GA + + G VA+G A + SVA+G+ S A S+A G + + Sbjct: 125 KDG-VAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRE 182 Query: 426 NDVALGSGSV 435 N V++G S+ Sbjct: 183 NSVSIGHESL 192 Score = 35.6 bits (81), Expect = 0.002 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 241 AQATGSDSIAMGSEAAASSSSTTAIGQYATASNTNATALGAGGTSAATGVIASGAGAVAL 300 A A G SIA+G+ A A+ + A+G + A+ N+ A+G + + GA + A Sbjct: 65 ASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQ 124 Query: 301 GGNSTQGAQALASN-AIAIGGQSQAASAGAIAIGQSALATGGQAVSVGVGN 350 GA+A S+ +A+G S+A + ++AIG S+ S+ +G+ Sbjct: 125 KDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGD 175
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 28.6 bits (64), Expect = 0.039 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%) Query: 263 PTSGAAFMVAEWLRAQRDDGRTIVFIAPDEGHRYADTVYDDAWLRGQG 310 +G + R Q +DG ++ IAP E Y+ + G Sbjct: 334 KCAGGDLIHGA--REQWNDGANVLAIAPGEIIAYSRNHVTNKLFEENG 379
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 92.9 bits (231), Expect = 3e-23 Identities = 90/380 (23%), Positives = 146/380 (38%), Gaps = 64/380 (16%) Query: 32 ASTAHAQSSVVLYGLIDTSITYANNQRTHGAGSPGSPGWAVTSGALNASRWGLRGREDLG 91 A A + V LYG I + + + +GA + T S+ G +G+EDLG Sbjct: 12 ALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVE--TGTGIVDLGSKIGFKGQEDLG 69 Query: 92 DGVSAIFALENGFSGASGALSQKGVDMFGRQAWIGLKSKEGGALTLGRQYDLILDF--VT 149 +G+ AI+ +E AS A + G RQ++IGLK G L +GR ++ D + Sbjct: 70 NGLKAIWQVE---QKASIAGTDSG--WGNRQSFIGLK-GGFGKLRVGRLNSVLKDTGDIN 123 Query: 150 PLGASGPGWGGNLAVHPYDNDDSNRNIRINNAVKYTSPTYRGWTLGAMYGFSNTAGPFGN 209 P + G N P R I +V+Y SP + G + Y ++ AG N Sbjct: 124 PWDSKSDYLGVNKIAEP-----EARLI----SVRYDSPEFAGLSGSVQYALNDNAG-RHN 173 Query: 210 NAAWSAGLSYANGPLKLGAGYLRINRNPNAANANGALSTTDGSATITGGSQQIWAVAGRY 269 + ++ AG +Y NG + G + QI + Y Sbjct: 174 SESYHAGFNYKNGGFFVQYGGAYKRH-------------HQVQENVNIEKYQIHRLVSGY 220 Query: 270 -AFGPHSIGAAWSHSATDRVSGVLQGGSIAKLDGNSLVFDNFTLDGRY-VVTPRLSLAAA 327 ++ A A L + + + TL R+ VTPR+S A Sbjct: 221 DNDALYASVAVQQQDAK------LVEENYSHNSQTEVA---ATLAYRFGNVTPRVSYAHG 271 Query: 328 YTYTMGRFDARSGETRPKWNHMVAQADYAFSIRTDAYLAAVYQRVSGGNGIPAFNATIWT 387 + + + + ++ +V A+Y FS RT A ++A + + G G F +T Sbjct: 272 FKGSFDATNYNN-----DYDQVVVGAEYDFSKRTSALVSAGWLQ--EGKGESKFVSTA-- 322 Query: 388 LTPSANGNQVVVALGLRHRF 407 +GLRH+F Sbjct: 323 -----------GGVGLRHKF 331
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.008 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 5/139 (3%) Query: 436 SALAGEAGKTMTEVTQAVARVTDIMGEIAAASGEQSRGIEQVNQAIAQMDEVTQQNAALV 495 S + + ++ V + E A + E ++ + +A Q +EV Q + Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 496 EEAAAASKSLEEQGRHLTQAVSFFRASAASAAPQARHAAQAKPKAKRGVAAPAPAPRAAH 555 E +K + + + +Q PK ++ A A Sbjct: 1094 ETQTTETKETATVEKEEKA-----KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 556 AAPTFNKPAPALAAAATAS 574 PT N P TA Sbjct: 1149 NDPTVNIKEPQSQTNTTAD 1167
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 92.3 bits (229), Expect = 3e-22 Identities = 74/403 (18%), Positives = 153/403 (37%), Gaps = 16/403 (3%) Query: 18 FMQNLDSTVVATALPSMARELGVNVVFLSSAITSYLVALTVFIPVSGWIAERFGAKRVFI 77 F L+ V+ +LP +A + + T++++ ++ V G ++++ G KR+ + Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 78 AAIAIFTAASVMCAAANGLAT-LVAARILQGAGGALMVPVGRLILYRGVSRHEMLAATTW 136 I I SV+ + + L+ AR +QGAG A + +++ R + + A Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 137 LTMPALVGPLLGPPLGGFLTDALSWRAVFWINVPVGVAGAALAARLVPASAGERRAPADA 196 + +G +GP +GG + + W + + +P+ + + D Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 197 RGMLLVGAALAALMLGVETAGRDVLPAGAPALCLGAGVALGGLTIRHCRRVAHPVVDLSL 256 +G++L+ + ML + L + + ++H R+V P VD L Sbjct: 202 KGIILMSVGIVFFMLFTTSYSISFLIVSVLSF---------LIFVKHIRKVTDPFVDPGL 252 Query: 257 L-GIPTFHAATIAGSLFRAGAGALPFLVPLTLQVGFGASASRSGAITLASA-LGSLVMRP 314 IP G +F AG + +VP ++ S + G++ + + ++ Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFV-SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 315 MTHAALHRAPMRTVLIAGSVSFAAVLAACATLSPAWPDAAVFALLLVGGLSRSLSFASLG 374 + + R VL G + + L ++ V G S + + Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTVIS 370 Query: 375 ALVFSDVPSERLSAATSFQGTAQQLMRAVGVAVAAGALHLAML 417 +V S + + A S L G+A+ G L + +L Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLL 413
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.0 bits (67), Expect = 0.008 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 46 RAELVVNTAELDLDEIVALLARAHGKGQDVARVHSG-----DPSLYGAIGEQIRRLAA 98 R EL TAEL + ++ H +H D +LYG E+I + +A Sbjct: 154 REELAELTAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYGYTDEEIFKASA 211
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 29.5 bits (65), Expect = 0.027 Identities = 25/63 (39%), Positives = 28/63 (44%) Query: 147 ADGATPAAIAGALVARGFGPSAMSVFEHLGGPLERRLDARADAWRDARAAALNVVAIECR 206 A GAT A GA VA G G A V GPL + L A + A A + VAI R Sbjct: 74 AIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGAR 133 Query: 207 ACA 209 A Sbjct: 134 AST 136
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 1e-06 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 14/171 (8%) Query: 3 AAYPFSALIGQ-AALQQALLLVA-VDPGLGGVLVSGPRGTAKSTAARALAELLP--EGRF 58 + L+G+ AA+Q+ ++A + ++++G GT K ARAL + G F Sbjct: 132 DSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 59 VTLPLSASDEQVTGSLDLASALADNT--VRFSPGLVARAHLGVLYVDEINLLPDALVDAL 116 V + ++A + S T S G +A G L++DEI +P L Sbjct: 192 VAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRL 251 Query: 117 LDAAASGVNTVERDGVSHSHAARFALVGTMNP------EEGELRPQLLDRF 161 L G G + +V N +G R L R Sbjct: 252 LRVLQQG--EYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 116 bits (292), Expect = 2e-32 Identities = 78/264 (29%), Positives = 113/264 (42%), Gaps = 15/264 (5%) Query: 59 PARIVVLEFMFAEDLAALDITPVGMADPAYYPIWIGYDDARFARVSDVGTRQEPSLEAIA 118 P RIV LE++ E L AL I P G+AD Y +W+ + V DVG R EP+LE + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVS-EPPLPDSVIDVGLRTEPNLELLT 93 Query: 119 AAKPDLILGVGLRHAPIFDALSRIAPTVLFKYSPNYIEDGRQVTQYDWARAILRTIGCLT 178 KP ++ + P + L+RIAP F +S DG+Q AR L + L Sbjct: 94 EMKPSFMVW-SAGYGPSPEMLARIAPGRGFNFS-----DGKQ--PLAMARKSLTEMADLL 145 Query: 179 GRARDARAVQARVDAGLARDARRIAAAGRAGERVAWLQELGLPDRYWAFTGNSASAGIAR 238 A A+ + + R + G R L L P F NS I Sbjct: 146 NLQSAAETHLAQYEDFIRSMKPRFV---KRGARPLLLTTLIDPRHMLVFGPNSLFQEILD 202 Query: 239 ALGLE-PWPGEPTREGTAYVTSEDLLKQPDLAVLFVSATEPGVPLDAKLDSSIWRFVPAR 297 G+ W GE G+ V+ + L D+ VL +DA + + +W+ +P Sbjct: 203 EYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKD-MDALMATPLWQAMPFV 261 Query: 298 RAGRVALVERNIWGFGGPMSALRL 321 RAGR V +W +G +SA+ Sbjct: 262 RAGRFQRVP-AVWFYGATLSAMHF 284
>2FE2SRDCTASE#Ferric iron reductase signature. Length = 262 Score = 57.4 bits (138), Expect = 6e-12 Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 24/186 (12%) Query: 78 RALVSQWSKYYFNLAASAGFAAALLLGRPLDMAPQRMRVALRGGMPVALLFEADALRPAQ 137 + L+S W+++Y L A L + LD++P+ VA F D Sbjct: 89 KPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHAEFHETGRVA-CFWVDVCEDKN 147 Query: 138 AEPAS---RYAALVDH-LRATIDTLAALAKLSPRVLWANAGNLLD-YLFEQCAHAPRAGA 192 A P S R L+ L + L A +++ +++W+N G L++ YL E G Sbjct: 148 ATPHSPQHRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEM---KQLLGE 204 Query: 193 DA------AWLFGPVDSRGEANPLRLPVRRVKPCSARLPDPFRARRVCCLRNEIPGEDQL 246 A F + GE NPL V L D RR CC R +P Q Sbjct: 205 ATVESLRHALFFEKTLTNGEDNPLWRTV--------VLRDGLLVRRTCCQRYRLPDVQQ- 255 Query: 247 CGSCPL 252 CG C L Sbjct: 256 CGDCTL 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.041 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 36 VTALCGPNGCGKSTLLRTLAGLQ 58 L G G GKSTL+ TL GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 122 bits (308), Expect = 4e-36 Identities = 81/252 (32%), Positives = 118/252 (46%), Gaps = 15/252 (5%) Query: 9 GRSFLVTGASSGIGRAAAVALRGGGARVVAAARNARELERLAHETGC-----EPLELDVG 63 G+ +TGA+ GIG A A L GA + A N +LE++ E DV Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 64 CDASVRAALSG-ERMRDAFDGLINCAGVTSLAAAIDTTADEFDRVMAVNARGAMLVARHV 122 A++ + ER D L+N AGV + +E++ +VN+ G +R V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 123 ARAMIRAGRGGSIVNVSSQAALVALPSHLAYCASKAALDAMTRVLCVELGPHGIRVNSVN 182 ++ M R GSIV V S A V S AY +SKAA T+ L +EL + IR N V+ Sbjct: 128 SKYM-MDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 183 PTVTLTPMAERAWSDPHASGPMLA--------AIPLGRFARVADVVAPILFLSSDAAAMV 234 P T T M W+D + + ++ IPL + A+ +D+ +LFL S A + Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 235 SGVALPVDGGYT 246 + L VDGG T Sbjct: 247 TMHNLCVDGGAT 258
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 677 bits (1749), Expect = 0.0 Identities = 226/851 (26%), Positives = 353/851 (41%), Gaps = 60/851 (7%) Query: 2 RIRHSFLCVFMLAAGSHARATEFNASFLSIDGRNDVDLSQFAQADYTLPGTYLLDVQVND 61 +R C F A + FN FL+ D + DLS+F PGTY +D+ +N+ Sbjct: 27 FVRLFVACAFAAQAPLSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNN 86 Query: 62 VFFGLQPIEFVAHDDGQGARACVAPELVAQFGLKKSLVENLPRTMGGRCADLASL-DGVT 120 + + + F D QG C+ +A GL + V + C L S+ T Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDAT 146 Query: 121 IRYQKGEGRLKITIAQAALEFADASYLPPERWSDGVDGAMLDYRVLANANHAFGRGAQQN 180 + G+ RL +TI QA + Y+PPE W G++ +L+Y + N R + Sbjct: 147 AQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGLLNYN--FSGNSVQNRIGGNS 204 Query: 181 NAVQAYGTIGANWGAWRFRGDYQAQ-TRAGGAVYAERAFRFNQLYAYRALPSIRSTLSFG 239 + G N GAWR R + + + ++ ++ + R + +RS L+ G Sbjct: 205 HYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLG 264 Query: 240 EIYVDSDIFSTFSMSGVAMKSDDRMLPPSMRGYAPLVTGVARTNAIVKVMQDSRVLYMTK 299 + Y DIF + G + SDD MLP S RG+AP++ G+AR A V + Q+ +Y + Sbjct: 265 DGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNST 324 Query: 300 VSPGAFALSNLN-TSVQGTLDVVVEEEDGTVQRFQVATAAVPFLAREGQLRYKTAIGQPR 358 V PG F ++++ G L V ++E DG+ Q F V ++VP L REG RY G+ R Sbjct: 325 VPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYR 384 Query: 359 TFGGAGITPWFGFAEAAYGLPFDVTVYGGLIAASGYTSVAFGVGRDFGRFGALSADVTHA 418 + P F + +GLP T+YGG A Y + FG+G++ G GALS D+T A Sbjct: 385 SGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQA 444 Query: 419 RATLWWNGRTKRGNSYRINYSKHVDALDADVRFFGYRFSERDYTNFQQFSGDPTASGL-- 476 +TL + G S R Y+K ++ +++ GYR+S Y NF + Sbjct: 445 NSTL-PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIE 503 Query: 477 -------------------ANGKQRYSAMLSKRFGDTST-YFSYDQTTYW-ARPSDRRIG 515 N + + ++++ G TST Y S TYW D + Sbjct: 504 TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQ 563 Query: 516 VTLTRAFSLGALKSVNLGFSAFRTQGAGGGGNQVSLTATLPLGER-----------QTLT 564 L AF + L +S + G ++L +P + + Sbjct: 564 AGLNTAFEDI---NWTLSYSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASAS 620 Query: 565 SSVSAGEGGTSVNAGYLYDGA---NGRTYQLYGGTTDGRASANASLRQRTPSYQ-----L 616 S+S G N +Y N +Y + G G + S T +Y+ Sbjct: 621 YSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNA 680 Query: 617 TAQASTVANAYASASLEVDGSFVATRYGVTAHANGNAGDTRLLVSTDGVPGVPLS-GSYA 675 S ++ V G +A GVT DT +LV G + + Sbjct: 681 NIGYS-HSDDIKQLYYGVSGGVLAHANGVTLGQPL--NDTVVLVKAPGAKDAKVENQTGV 737 Query: 676 RTNARGYAVIDGVSPYNVYDATVSVEKLGLDTDVTNPIQRTVLTDGAIGYIRFNAARGRN 735 RT+ RGYAV+ + Y + L + D+ N + V T GAI F A G Sbjct: 738 RTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIK 797 Query: 736 VFVTLTGDGGAPVPFGASVQDAATGKELGIVGEAGAAYLTQVQPRAKLVVRAGAKTICT- 794 + +TLT + P+PFGA V + + GIV + G YL+ + K+ V+ G + Sbjct: 798 LLMTLTHNNK-PLPFGAMVTS-ESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHC 855 Query: 795 --PAALPDTLQ 803 LP Q Sbjct: 856 VANYQLPPESQ 866
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.002 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 2/104 (1%) Query: 382 APRLTLPIFAGGRNRANLDVADARKHIAVAEYEKTIQTAFREV--ADALAARDQIDAQLA 439 P L LP +N + +V I Q +E+ A R + A++ Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 440 AQQAVYGADAERLRLAQRRYDSGVASYLELLDAQRSTFESGQEL 483 + + + RL + +L+ + E+ EL Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNEL 268
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1079 bits (2791), Expect = 0.0 Identities = 516/1032 (50%), Positives = 701/1032 (67%), Gaps = 6/1032 (0%) Query: 1 MARFFIDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSLYATYPGASAQVVEES 60 MA FFI RP+FAWV+++ +M+ G AI LPVAQYP IAPP VS+ A YPGA AQ V+++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTAVIEREMNGVPGLLYTSATS-SAGQASLSLTFKQGVSADLAAVDVQNRLKIVEARLPE 119 VT VIE+ MNG+ L+Y S+TS SAG +++LTF+ G D+A V VQN+L++ LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 PVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGKVQFWGA 179 V++ GIS+EK++ + ++ S++ + ++ +Y ++NV L R+ GVG VQ +GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAATVLADAPL 239 +YAMRIW D + LT D+ + ++ N ++ G +G + + A+++A Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 TTPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSFVNGKTATGMGIKLAPGSNAV 299 P+ FG + LR +DGS + L+DVAR+E GG +YN + +NGK A G+GIKLA G+NA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359 T K ++A + EL FFP G+K PY+T FV++S+ +VV TL EA +LVF VM+LF+Q Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLM 419 N RATLIPT+ VPV LLGTF + A G+SIN LTMFGMVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 VEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALAVSIGF 479 +E+KLPP EAT K+M QI GA+VGI +VL++VF+PMAFFGG+ G IYRQF+ + ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAFLALSLTPALCATLLKPVADDHHE-KDGFFGWFNRFVARSTHRYTRRVGRVLERPLRW 538 S +AL LTPALCATLLKPV+ +HHE K GFFGWFN S + YT VG++L R+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 539 LVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGTPLAETMQSVRRVEEYVRTH 598 L++Y + A +L +LP++FLP+EDQG F+ M+ P G T + + +V +Y + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 599 SPSAY--TFALGGYNLYGEGPNGGMIFVTMKDWKERKRARDQVQAIIAEINAHFAGTPNT 656 + F + G++ G+ N GM FV++K W+ER + +A+I + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 MVFAINMPALPDLGLTGGFDFRLQDRGGLGYGAFVAAREKLLAEGRKDPV-LTDLMFAGT 715 V NMPA+ +LG GFDF L D+ GLG+ A AR +LL + P L + G Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 QDAPQLKLDIDRAKASALGVSMEEINATLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRL 775 +D Q KL++D+ KA ALGVS+ +IN T++ G Y+ DF+ +V+++ VQAD + R+ Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 DAADVTKLRVRNAKGEMVPLAAFATLHWTMGPPQLTRYNGFPSFTINGAASAGHSSGEAM 835 DV KL VR+A GEMVP +AF T HW G P+L RYNG PS I G A+ G SSG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 AAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAV 895 A +E +AS LPAG GY W+G SY+ERLSG QAP L A+S +VVFL LAALYESWSIP +V Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 MLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQR-MSLA 954 MLVVPLG++G + TL ND+YF VGL+ TIGLSAKNAILIVE AKDL+ + + Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 DAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATLFAIFL 1014 +A L A R+RLRPI+MTSLAF +GVLPLA + GA SGAQ A+G GV+GG++SATL AIF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPLFFVCVGRVF 1026 VP+FFV + R F Sbjct: 1021 VPVFFVVIRRCF 1032
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.2 bits (94), Expect = 1e-05 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 5/133 (3%) Query: 67 EVRARVAGIVTARTYEEGQEVKRGAVLFRIDPAPFKAARDAAAGALEKARAAHLAALDKR 126 E++ IV +EG+ V++G VL ++ +A +L +AR Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 127 RRYDELVRDRAVSERDHTEALADERQAKAAVASARAELA-----RAQLQLDYATVTAPID 181 R + + E + + + + + + Q +L+ A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 182 GRARRALVTEGAL 194 R E Sbjct: 218 TVLARINRYENLS 230 Score = 35.2 bits (81), Expect = 4e-04 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 10/100 (10%) Query: 102 KAARDAAAGALEKARAAHLAALDKRRRYDELVRDRAVSERDHTEALADERQAKAAVASAR 161 LE+ + L+A ++ + +L + E L RQ + Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFK---------NEILDKLRQTTDNIGLLT 315 Query: 162 AELARAQLQLDYATVTAPIDGR-ARRALVTEGALVGQDQA 200 ELA+ + + + + AP+ + + + TEG +V + Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 117 bits (295), Expect = 5e-35 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 4/210 (1%) Query: 1 MARKTREESLNTKNRILDAAELVLLEKGVGQTAMADIAEAAGMSRGAVYGHFNGKIEVCV 60 MARKT++E+ T+ ILD A + ++GV T++ +IA+AAG++RGA+Y HF K ++ Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AVCDRAFSRAVEGFDLSDERPA---LATLRLAASHYLHQCGEPGSMQRVLEILYMKCEQS 117 + + + S E + L+ LR H L + ++EI++ KCE Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 EENAPLMRRRALYELQTLRIAKALLRRAVAAGELDASLDVHLAGVYLLSLLEGIFGSMIW 177 E A + + + L++ + L+ + A L A L A + + + G+ + ++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 178 TTRLRGDRWRDAEAMLDAGVDTLRASPALR 207 + D ++A + ++ P LR Sbjct: 181 APQSF-DLKKEARDYVAILLEMYLLCPTLR 209
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 32.1 bits (72), Expect = 0.004 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 4/132 (3%) Query: 23 RVAAARNELQNAADAAALAGAASLEAGAGAPAWAAAASAAAAALSLNASDGAALSSGDVQ 82 A A+ + + A A AA+ A PA + + AA + + GAA + + Sbjct: 226 AAAEAKRKAEEQARQQAAIRAANTYA---MPANGSVVATAAGRGLIQVAQGAASLAQAIS 282 Query: 83 TGYWNVTGVPAGLEPTTLAPGEYDVPAVQATVTRAPNQNGGPLSLLMGGLLGLVGTPAAA 142 V G P+ +A G + T + +Q + +G +G P + Sbjct: 283 DAI-AVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSV 341 Query: 143 TAVAVAGAPATV 154 AVA A TV Sbjct: 342 NLNAVAKASGTV 353
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.1 bits (70), Expect = 0.004 Identities = 20/83 (24%), Positives = 32/83 (38%) Query: 54 SVAESALAAGDAELAATLFERALKADPRSLPAQVGLGDAMYQTGELARAGVLYAQAAAAA 113 S+A + +G E A +F+ D +GLG G+ A Y+ A Sbjct: 41 SLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMD 100 Query: 114 PDDPRAQLGLARVALRERHLDDA 136 +PR A L++ L +A Sbjct: 101 IKEPRFPFHAAECLLQKGELAEA 123
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.032 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 303 IVISGGTGSGKTTLLNAL---SHFIDSHERIVTIEDAAELQLQQPHVVSL 349 +V+ G G GK+TL+N L F D+H I T +D+ E Q+ L Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYE-QIAGIVAYEL 647
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 20/165 (12%) Query: 22 GARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSGA 81 GA ++ DAA V+ ++ + + ++ DV Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYD--VRITSNAATLWRWIA--AGDGDLVVTDVV-- 56 Query: 82 AMP----LSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIGVRDYLVKPL----TVEL 133 MP L R+ P + V+V+ +N G DYL KP + + Sbjct: 57 -MPDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGI 114 Query: 134 VHRALSAADPNAAARAGKAIGFVGARGGVGVTSIAVALARHLADR 178 + RAL+ + + + G S A+ + R Sbjct: 115 IGRALAEPKRRPSKLEDDSQDGMPLVG----RSAAMQEIYRVLAR 155
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 143 bits (361), Expect = 4e-39 Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 16/283 (5%) Query: 127 VVQTLKPYLRQQEALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGA------- 179 +V + E ++ +L + RP QV + I EV LGI W+ A Sbjct: 322 IVTAAPDVMNDLERVIAQLDIRRP-QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTN 380 Query: 180 SGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDG--VLDALDQEGLITM 237 SG + G ++ S A S G Y + +L AL + Sbjct: 381 SGLPISTAIAGANQYNKDGTVSSSLAS-ALSSFNGIAAGFYQGNWAMLLTALSSSTKNDI 439 Query: 238 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGA----ITIQFKPYGVSLDFTPTVLADNR 293 LA P++ + A+F G E P+ TT T++ K G+ L P + + Sbjct: 440 LATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDS 499 Query: 294 ISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLA 353 + L++ EVS + S T+ + R V+ V + SG++ +GGLL SD Sbjct: 500 VLLEIEQEVSSVADAASSTSSDLGA-TFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTAD 558 Query: 354 ELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGE 396 ++P L +PV+G LF S + K +++ + P +++ + Sbjct: 559 KVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRDRDEYR 601
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 32.1 bits (73), Expect = 8e-04 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 18/148 (12%) Query: 20 LVASWTLASLALADLRTRRLATFAVALVGALYAALALAGAPGDGGFASHAALGAAA---- 75 L+ +W L +L DL L + L+ L G A +GA A Sbjct: 138 LLLTWVLVALTFIDLDKMLLP--DQLTLPLLWGGLLFNLLGGFVSLGD-AVIGAMAGYLV 194 Query: 76 ----FALGAAMFRAGWIAGGDVKLAAVVFLWAGPAHAWPVAFAIGVGGLAVGAVCIAAGR 131 + + + GD KL A + W G V + G +G I Sbjct: 195 LWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRN 254 Query: 132 APRVLAWFAPARGVPYGVALAAGGLLAV 159 ++ +P+G LA G +A+ Sbjct: 255 H-------HQSKPIPFGPYLAIAGWIAL 275
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.8 bits (67), Expect = 0.021 Identities = 56/306 (18%), Positives = 102/306 (33%), Gaps = 53/306 (17%) Query: 57 TTQLLNTAGVFAAGF-LMRPIGGWLFGRIADKHGRRAAMMISVLMMCGGSLVIAVLPTYA 115 + + G+ A + LM+ + G ++D+ GRR +++S+ ++A P Sbjct: 38 SNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW 97 Query: 116 QIGALAPLLLLVARLFQGLSVGGEYGTSATYMSEVALQGRR----GFF-ASFQYVTLIGG 170 +L + R+ G++ G + Y++++ R GF A F + + G Sbjct: 98 --------VLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGP 148 Query: 171 QLCALLVLVILQQTLSSDALKAWGWRIPFVVGAAAALIS-----LYLRKSLDETSTSESR 225 L L+ PF AA ++ L +S R Sbjct: 149 VLGGLMGGF--------------SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRR 194 Query: 226 KAKDAGT-IRGVWQHKG-AFLTVVGFTAGGSLIFYTFTTYMQKYLVNTAGMHAKTASNVM 283 +A + R A L V F L+ + + A T + Sbjct: 195 EALNPLASFRWARGMTVVAALMAVFFIM--QLVGQVPAALWVIFGEDRFHWDATTIGISL 252 Query: 284 TA-----ALFVYMLMQPMFGALSDKIGRRMSMILFGTG----AVIGTVP------LMHAL 328 A +L M+ P+ L ++ + MI GTG A ++ A Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS 312 Query: 329 GGVTSP 334 GG+ P Sbjct: 313 GGIGMP 318
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 32.3 bits (73), Expect = 0.006 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 258 GLAKMQASLAGTVRAVRVGSESIATAARQIAAGNIDLSSRTEEQAAALEQTASSMEELTG 317 GL+ MQ +LA +R VR G +A Q AGNI++ + A + + A S++ Sbjct: 404 GLSTMQNNLARVLRPVRAGITGDFSAESQF-AGNIEIGAPVPLAADSKVRRARSVDGAGQ 462 Query: 318 TVRRNAD-NARQASAL 332 +R +A++ S L Sbjct: 463 GLRLEIPLDAQELSGL 478
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 297 bits (763), Expect = 3e-98 Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 53/475 (11%) Query: 19 ADIVDRVARCMSSFDVEVIRADN-EELSAERTAMRPSLAIISVSMIE-SGAAFLRTWQAE 76 A I + + +S +V N L A L + V M + + L + Sbjct: 13 AAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKA 72 Query: 77 -IGMPVVWVGA--------------ARDHDPSLYPPEYSHILPLDFTCAELRGMISKLAV 121 +PV+ + A A D+ P P + + ++ + +++ Sbjct: 73 RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK--PFDLTELIGIIGRA------LAEPKR 124 Query: 122 QLRAHAAKALEPSTLVAHSDCMQALLQEVDTFADCDTNVLLHGETGVGKERIAQLLHEKH 181 + + + LV S MQ + + + D +++ GE+G GKE +A+ LH+ + Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHD-Y 183 Query: 182 SRYGMGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDL 241 + G FV +N AIP L ES FGH KG+FTGA G FEQA GGTLFLDE+GD+ Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 242 PLYQQVKLLRVLEDGAVLRIGATAPVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVI 301 P+ Q +LLRVL+ G +G P++ D R+VAA+NK L Q + GLFR DLYYRL V+ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 302 ELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVADSYFPGNVRELRN 361 L +P L +R D L + FV E + E + +PGNVREL N Sbjct: 304 PLRLPPLRDR-AEDIPDLVRHFVQQAEKEGL--DVKRFDQEALELMKAHPWPGNVRELEN 360 Query: 362 LAERVGV------------------------TVRQTGGWDTARLQRLIAHARSAAQPAPA 397 L R+ + + + + + + Sbjct: 361 LVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFG 420 Query: 398 ESAPDVFVDRSKWDMTERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMRKYQI 452 ++ P + E ++AAL A + A LG++R L +K+R+ + Sbjct: 421 DALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>cloacin#Cloacin signature. Length = 551 Score = 26.6 bits (58), Expect = 0.031 Identities = 13/32 (40%), Positives = 14/32 (43%) Query: 99 GSAAGMSGMSGGGGGGGGGGGAGYSLAPASGS 130 GS G SG G GGG G G S + S Sbjct: 51 GSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.7 bits (71), Expect = 0.004 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Query: 224 LMNQLKLAPAVRTEIRNDATRIAAAARARQRA-LARPGAPGAAASAGATLAASAAGSNGG 282 MN L A A + R AAA A+++A AA A T A A GS Sbjct: 203 RMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQ--AAIRAANTYAMPANGSVVA 260 Query: 283 AAAGKGAVAGAGASAPGAAATATAAA 308 AAG+G + A +A A A + A A Sbjct: 261 TAAGRGLIQVAQGAASLAQAISDAIA 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 5e-05 Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 79 AALRVSHPGLPIVALGSLGEPESALAALRAGVRDFIDFSAPAEDALRITRGLLDHVGDQP 138 ++ + P LP++ + + +A+ A G D++ + + I L +P Sbjct: 67 PRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRP 126 Query: 139 SRH 141 S+ Sbjct: 127 SKL 129
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 138 bits (349), Expect = 2e-37 Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 11/249 (4%) Query: 160 VQVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGG----TSSMSVSANI 215 V V+ + E + G+ + +N G T + + +++ G S+ Sbjct: 347 VLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSSSLA 406 Query: 216 PIASAFN-LVVGSATRGLFADLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVP 274 S+FN + G L+ L ++ +LA P++V L A+F G E+PV Sbjct: 407 SALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTG 466 Query: 275 QSLGT-----ISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSITINGVTVPA 329 + +++ K G+ L + P + + L++ E S + S + + Sbjct: 467 SQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAAS-STSSDLGAT 525 Query: 330 LTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKEL 389 TR + V +G GE+ +GGL+D+ + DKVP LGD+P+IG F+ S + + + L Sbjct: 526 FNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNL 585 Query: 390 VIIVTPHLV 398 ++ + P ++ Sbjct: 586 MLFIRPTVI 594
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 53.7 bits (129), Expect = 3e-11 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 4 LFSIGFFFAWAAAVAIADCRDRRIPNELVLVGLAAVIIFTVCRQNPFGTTLSGALIGGAV 63 + A+ D +P++L L L ++F + F +L A+IG Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNL--LGGF-VSLGDAVIGAMA 190 Query: 64 GLVSLFPFFAL-------RVMGAADVKVFAVLGAWCGLPALPRLWVVASVAAGVHALALM 116 G + L+ + MG D K+ A LGAW G ALP + +++S+ + L+ Sbjct: 191 GYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSLVGAFMGIGLI 250 Query: 117 LLTR 120 LL Sbjct: 251 LLRN 254
>cloacin#Cloacin signature. Length = 551 Score = 44.7 bits (105), Expect = 6e-07 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%) Query: 30 GGSGTISKGLDGSGSGSGGGNAISTTGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGGGS 89 G+ + S ++G +G G G S G S GGSGSG G +G +GGG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSG-IHWGGGSGHGNGGGNG 69 Query: 90 TSGGGSTSGGGSTSGGTSTSSSINALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLP 146 SGGGS +GG ++ + AL T + AG+ + + ++ + P Sbjct: 70 NSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGP 126 Score = 40.5 bits (94), Expect = 1e-05 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 38 GLDGSGSGSGGGNAI-STTGGSGSGGTSGAGGSGSGGSGSSGSTGGLSGGG-GSTSGGGS 95 G DG G +G + + GG G G GSG S + GG SG G G G Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 96 TSGGGSTSGGTSTSSSINALGTIAGNTGGIISGAGSTVSGLGTVVGSQTLPGVNPQTTQA 155 +GGG+ + G + + N A G + + GL + + L A Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAA 122 Query: 156 LGG 158 L G Sbjct: 123 LKG 125 Score = 33.9 bits (77), Expect = 0.001 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 1/122 (0%) Query: 58 SGSGGTSGAGGSGSGGSGSSGSTGGLSGGGGSTSGGGSTSGGGSTSGGTSTSSSINALGT 117 SG G G+ S +G GL GGG++ G G +S GG+ + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 118 IAGNTGGIISGAGSTVSGLGTVVGSQTLPGVNPQTTQALGGIVQDL-GGAVSALGSGVTS 176 G SG GS G + V + G +T GG+ + GA+SA + + + Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMA 121 Query: 177 GI 178 + Sbjct: 122 AL 123
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.6 bits (69), Expect = 0.025 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 36/179 (20%) Query: 480 APWDAMSDLFNRHLLDYSPRSLNDLKLSADGGALRVRGGIKLWNQVPPGVWLPADMKGSL 539 AP + FN L P+++ DL +G ++PPG + D+ + Sbjct: 40 APLSSAELYFNPRFLADDPQAVADLSRFENG------------QELPPGTY-RVDIYLNN 86 Query: 540 TLLDERHLAFTPTQVSVLGIP--QAKLLRALGIELSSLAPLKRRGAELRGDSLVLDQYTV 597 + R + F +P L ++G+ +S++ + + L Sbjct: 87 GYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLA---DDACVPLTSM-- 141 Query: 598 FPPPVLIGHMSQATVEPDG----LRLTFRPAPNAPVLRPPANLPGSYLWLEGGDTKMFN 652 + AT + D L LT P A + LW G + + N Sbjct: 142 ---------IHDATAQLDVGQQRLNLTI---PQAFMSNRARGYIPPELWDPGINAGLLN 188
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 117 bits (296), Expect = 3e-38 Identities = 35/89 (39%), Positives = 53/89 (59%) Query: 18 TKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGR 77 K +L + ++ L K+++ V+A F + L GE V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 78 NPKTGEAIPIAARRVVTFHASQKLKALVE 106 NP+TGE I I A +V F A + LK V+ Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 27.0 bits (60), Expect = 0.020 Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 63 SVQIFISDMANFPGMNEVWDAWVAQGATPPRATV 96 S+ + +A F G N W +WV Q T + Sbjct: 284 SLLYIPALVAQFAGGNSGWKSWVEQNLTKGDHPI 317
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.8 bits (61), Expect = 0.025 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 22 AATLAPAHADTTGLIEPAHLSVDGSLPAAQRDAQILAARRYDTFWHNGDPALARAALADD 81 AA+LA A +D ++ S + A A + + R W + P R AL D Sbjct: 274 AASLAQAISDAIAVLGRVLASAPSVM--AVGFASLTYSSRTAEQWQDQTPDSVRYALGMD 331 Query: 82 FADRTPPP 89 A PP Sbjct: 332 AAKLGLPP 339
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.9 bits (64), Expect = 0.038 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 10/102 (9%) Query: 39 ALGAAAAPGRALAAGATATADTGAASLAGGSLRRSPAGEP---------EAAHGAFWPNG 89 A R +G + +A G GG+ R +P P A A Sbjct: 319 AAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRV 378 Query: 90 ARLVISISMQFEAGGQPPTGADSPFPPVDFPPQVPVDLASAT 131 + +++ A Q A P + P+D+A A+ Sbjct: 379 LPEPVKLTLTGGADAQGDIVATEL-PSIPGTSIGPLDVALAS 419
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 73.9 bits (181), Expect = 6e-18 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 19/249 (7%) Query: 10 VLVIGGSSGIGAAAARAFAVLDADVTIASRDANKLAAAARAIDG-PRPVRQAVLDTTDAP 68 + G + GIG A AR A A + + KL ++ R D D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 69 AVDA----FFAEAGPFDHVVMSAAHTPGGPVRKLPLADAQAAMDSKFWGAY----RVARA 120 A+D E GP D +V A G + L + +A G + V++ Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKY 130 Query: 121 ARIAPGGSLTFVSGFLSVRPSASAVLQGAINAALEALARGLALELAP--VRVNTVSPGLV 178 GS+ V + P S + AA + L LELA +R N VSPG Sbjct: 131 MMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGST 190 Query: 179 ATPLWSKL--GDAAREAMYASAAAR----LPARRVGQPEDIANAIVYLAATR--YATGST 230 T + L + E + + +P +++ +P DIA+A+++L + + + T Sbjct: 191 ETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHN 250 Query: 231 VLVDGGGAI 239 + VDGG + Sbjct: 251 LCVDGGATL 259
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.015 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%) Query: 41 LLGDNGAGKSTLIKTLAGVHPPSDGQYLVDGKPVLFDSPKDA 82 L G G GKSTLI TL G+ + D + KD+ Sbjct: 601 LEGTGGIGKSTLINTLVGL------DFFSDT-HFDIGTGKDS 635
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.6 bits (64), Expect = 0.040 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 99 NGATVMVYGEVAGTIQGSPAPLYQRPRFVDDAQW----DAYAERVDAFARYTRAQGV-RL 153 T + + G + P + + A+ ++ +A+ + Sbjct: 207 KEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKD 266 Query: 154 GYHHHMGAYVESPADVDRLMASTSDAVGLL 183 G H + A + +P DVD ++A+ + +GL Sbjct: 267 GAHVELAANIGTPKDVDGVLANGGEGIGLY 296
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 27.6 bits (61), Expect = 0.039 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 190 VDIREEALHELIDRLDDLASEFHSAF--LHEAGK 221 + R + L + + L LA F AF H+AG Sbjct: 283 LTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGF 316
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 47.7 bits (113), Expect = 6e-08 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 26/154 (16%) Query: 119 GSGFIVGADGIILTTAYVVGQASEATVRLIDRR-----------EFKA-RVLAVDDSSDV 166 SG +VG +LT +VV L F A ++ D+ Sbjct: 104 ASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 162 Query: 167 AVLQIDATK--------LPTVRLGDSSRVRTGEPVLTIGTPDGSANTVTTGIVSATARML 218 A+++ + + + +++ + + + G P G T + ++ Sbjct: 163 AIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP-GDKPVATMW--ESKGKIT 219 Query: 219 PDGGRFPFFQTDVTGNLDNSGGPVFNRAGEVIGI 252 G + TG NSG PVFN EVIGI Sbjct: 220 YLKGEAMQYDLSTTGG--NSGSPVFNEKNEVIGI 251
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 99 bits (249), Expect = 4e-25 Identities = 63/414 (15%), Positives = 134/414 (32%), Gaps = 91/414 (21%) Query: 51 KRPGKKPLVVLAIIVVLLLVGAFVW-WFATRNQVSTDDA--YTDGNAITIAPKVSGYVVA 107 + P + ++A ++ LV AF+ V+T + G + I P + V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 108 LAIDDNVYVHRGDLLLVIDQRDYQAQVDAARAQLGLAQAQLDAAQVQLDIA------HVQ 161 + + + V +GD+LL + +A ++ L A+ + Q+ ++ Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELK 169 Query: 162 FPAQYRQAQA---QIEAAQASFRQALAAYERQHAVDARATSQQAIDVADAQRLTADANVA 218 P + ++ + ++ + ++ Q + + +D A+RLT A + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ-----KYQKELNLDKKRAERLTVLARIN 224 Query: 219 TARAQA----------------------------RTASLVPQQIRQAQTAVEQRRQQVLQ 250 + ++R ++ +EQ ++L Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILS 284 Query: 251 AQA-----------------------------QLEAAQLALSYCEVRAPSDGWITRRNVQ 281 A+ +L + +RAP + + V Sbjct: 285 AKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH 344 Query: 282 -LGSFLQAGAALFAIVTPQ---LWVTANFKESQLERMRAGDRVSVSVDAYP---NLELHG 334 G + L IV P+ L VTA + + + G + V+A+P L G Sbjct: 345 TEGGVVTTAETLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVG 403 Query: 335 HVDSIQLGSGSRFSAFPPENATGNFVKIVQRVPVKIAIDGGLPRDPPLGIGLSV 388 V +I L + + G ++ + G ++ PL G++V Sbjct: 404 KVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGN--KNIPLSSGMAV 448
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 102 bits (256), Expect = 2e-25 Identities = 71/331 (21%), Positives = 140/331 (42%), Gaps = 20/331 (6%) Query: 41 AFMEVLDTTIVNVALPHIAGTMSASYDEATWTLTSYLVANGIVLPISGFLGRLLGRKRYF 100 +F VL+ ++NV+LP IA + W T++++ I + G L LG KR Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 101 VLCIVAFTICSFLCGIATDLGQLIVF-RVLQGLFGGGLQPNQQSIILDTF-PPEQRNRAF 158 + I+ S + + L++ R +QG G P +++ + P E R +AF Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIPKENRGKAF 141 Query: 159 SISAVAIVVAPVLGPTLGGWITDNFSWRWVFLLNVPIGVLTSLAVIQLVEDPPWKRGRAR 218 + + + +GP +GG I W +LL +P+ +T + V L++ K R + Sbjct: 142 GLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM--ITIITVPFLMKLLK-KEVRIK 196 Query: 219 GLSIDYIGITLIAIGLGCLQVMLDRGEDEDWFASTFIRTFAVLTVAGLVGATFWLLYAKK 278 G D GI L+++G+ + F +++ +F +++V + + Sbjct: 197 G-HFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTD 245 Query: 279 PVVDLSCLKDRNFALGCVTIATFAVVLYGSAVLVPQLAQQRLGYTAMLAG-LVLSPGALL 337 P VD K+ F +G + + G +VP + + + G +++ PG + Sbjct: 246 PFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMS 305 Query: 338 ITLEIPIVSKLMPYVQTRFLVCFGFLLLAAS 368 + + I L+ +++ G L+ S Sbjct: 306 VIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.7 bits (129), Expect = 8e-11 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 13/158 (8%) Query: 2 LIADDHPLVLLGVRHMLAGMG-DVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAA 60 L+ADD + + L+ G DV I A L +AA D+V+TD MP+ Sbjct: 7 LVADDDAAIRTVLNQALSRAGYDVRITSNAAT---LWRWIAAGDGDLVVTDVVMPD---E 60 Query: 61 DGLAMLTAIRDGYPSVRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDEL----PRALA 116 + +L I+ P + V+V++ + + + GA L K DL EL RALA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 117 AVYQGRPFVGTHAGAAGGGAMRGTDAPRQLSPREIEVV 154 + + G + G A Q R + + Sbjct: 121 EPKRRPS--KLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 1e-12 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 440 RVLVVDDQEMNRIVLRYQLDALGHHARLCASGDEALRALGTAAYDVVLTDCRMPGMDGIA 499 +LV DD R VL L G+ R+ ++ R + D+V+TD MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 500 LTAAIRAH-PDARVRATPIVGVTALVSDAEHARCVDAGMTLCIGKP----TTLDALERAL 554 L I+ PD P++ ++A + + + G + KP + + RAL Sbjct: 65 LLPRIKKARPD-----LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 555 VE 556 E Sbjct: 120 AE 121
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 455 bits (1171), Expect = e-150 Identities = 166/808 (20%), Positives = 267/808 (33%), Gaps = 89/808 (11%) Query: 37 GTLYLELVVN-ALSTGRIVPVRYRDGIYYARA----GDLAQASVRTGAQP-------DAL 84 GT +++ +N R V D LA + T + DA Sbjct: 76 GTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDAC 135 Query: 85 VDL-SRLDGVQVEYESAEQRLKLTVPPDWLPRQTLG--SPRLYDRTPAAVSFGLLFNYDV 141 V L S + + + +QRL LT+P ++ + G P L+D A L NY+ Sbjct: 136 VPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINA----GLLNYNF 191 Query: 142 YANSPT--LGTSYTSAWTEQRLFDRWGTVTNTGVYRRDYGGGAGGVGSNRYLRYDTFWRY 199 NS +G + A+ + G Y GS ++ W Sbjct: 192 SGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLE 251 Query: 200 SDQDRLR-TYTAGDVITGALSWSSAVRLGGVSVERDFKVRPDIVTYPLPQFSGQAAVPTA 258 D LR T GD T + + G + D + PD P G A Sbjct: 252 RDIIPLRSRLTLGDGYTQGDIFDG-INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQ 310 Query: 259 VDLFINGSKTTTGQVNPGPFTMNNVPFINGAGEATVVTTDALGRQVATTIPFYVANTLLQ 318 V + NG V PGPFT+N++ +G+ V +A G T+P+ L + Sbjct: 311 VTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQR 370 Query: 319 KGLSDYSLSAGAMRRDYGIRSFSYGKFAASGTARHGLTDYLTLEGHVEGGERFALGGLGF 378 +G + YS++AG R + T HGL T+ G + +R+ G Sbjct: 371 EGHTRYSITAGEYRSGNAQQE---KPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFGI 427 Query: 379 DLGIGMFGVLGVAATQSRLAGASGRQY---------------------AFGYSYASQRF- 416 +G G L V TQ+ Q+ GY Y++ + Sbjct: 428 GKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYF 487 Query: 417 SVSLQRIQRTNGFRDLS--------VYDLPANVAYRLVRSSTQATGALNLGALG----GT 464 + + R NG+ + R Q T LG Sbjct: 488 NFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSG 547 Query: 465 LGAGYFDVRGADGTRTRIANLSYTRPLWRRATLYASVNKTVGEHGVAAQLQLIV--PLG- 521 Y+ D N ++ W TL S+ K + G L L V P Sbjct: 548 SHQTYWGTSNVDEQFQAGLNTAFEDINW---TLSYSLTKNAWQKGRDQMLALNVNIPFSH 604 Query: 522 ----------EPGVVTGALARDANNSFSERVQYSRSVPSDGGLGWNL--AYAGGGSHYQ- 568 + +++ D N + ++ D L +++ YAGGG Sbjct: 605 WLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSG 664 Query: 569 ---QADATWRNRYFQAQGGVYGYGAGRGYARWGEVQGSVVVMDGAVLPANRVDDAFVLID 625 A +R Y A G + + V G V+ V ++D VL+ Sbjct: 665 STGYATLNYRGGYGNANIGYSHSDDIKQL--YYGVSGGVLAHANGVTLGQPLNDTVVLVK 722 Query: 626 TQGRGGVPVRYENQLVGKTDGGGHLLVPWAPSYYAGKYEIDPLDLPSNVRVPIVERRVAV 685 G V ENQ +TD G+ ++P+A Y + +D L NV + V Sbjct: 723 APGAKDAKV--ENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP 780 Query: 686 RDHGGALVTFPIRRIVCAQIALVDAAGRPVAIGSRVLHEESGETALVGWQGETYLEGLSA 745 F R + + +P+ G+ V E S + +V G+ YL G+ Sbjct: 781 TRGAIVRAEFKARVG-IKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPL 839 Query: 746 LNHLRVR--TPDGRTCRATFAADIDAAQ 771 ++V+ + C A + ++ Q Sbjct: 840 AGKVQVKWGEEENAHCVANYQLPPESQQ 867
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.4 bits (97), Expect = 5e-06 Identities = 59/353 (16%), Positives = 121/353 (34%), Gaps = 55/353 (15%) Query: 27 VDTQMFSLVIPALLTAWGIGKGQAGLIGGATLAAGAIGGLLAGMIADRFGRVRALQITVC 86 ++ + ++ +P + + + A + +IG + G ++D+ G R L + Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 87 WFSLFTFLSAFAQNFEQLLVL-KTLQGLGFGGEWTAGAVLLSETIRARHRGKAMGIVQSA 145 + + +F LL++ + +QG G V+++ I +RGKA G++ S Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 146 WGFGWGGAVLLYTLVFSWLPPEWAWRVLFAIGVLPALLVLYIRRAIPEPPRDDAR----- 200 G G + ++ ++ W L I ++ + V ++ + + + R Sbjct: 148 VAMGEGVGPAIGGMIAHYI----HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKG 203 Query: 201 ----------------------VAVSTSAAVAQTAPARASAKSIFDPSV------LRMTI 232 + VS + + R DP + + + Sbjct: 204 IILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVL 263 Query: 233 VGGLIGVGAHGGYHAITTWLPTYLKTERHLSVLGTG------AYLAVIIVAFIIGCMTSA 286 GG+I G + +P +K LS G ++VII +I G Sbjct: 264 CGGIIFGTVAG----FVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG----- 314 Query: 287 YLQDRIGRRRNLMLFSACCVVTVNLYVMLPLDNVAMLLLGFPLGFFAAGIPAT 339 L DR G +L ++V+ L + + F G+ T Sbjct: 315 ILVDRRGPL--YVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFT 365
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 127 bits (321), Expect = 2e-37 Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 10/151 (6%) Query: 87 FQCGEPAQPVAQQPQPAPAAAPAAEPIRLNADAMFAFDRADAASMTEQGRQQLSQLAQRL 146 F GE A VA P PAPA + L +D +F F++A + +G+ L QL +L Sbjct: 191 FGQGEAAPVVA--PAPAPAPEVQTKHFTLKSDVLFNFNKAT---LKPEGQAALDQLYSQL 245 Query: 147 TDRHAQTVSIV--GYTDRLGSDAYNRQLSQARAKTVGDYLIAAGVPADSVHAEGRGASDP 204 ++ + S+V GYTDR+GSDAYN+ LS+ RA++V DYLI+ G+PAD + A G G S+P Sbjct: 246 SNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP 305 Query: 205 LV--QCDQ-RERAALIACLAPNRRVEVVAAG 232 + CD ++RAALI CLAP+RRVE+ G Sbjct: 306 VTGNTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>PF03895#Serum resistance protein DsrA. Length = 79 Score = 39.4 bits (92), Expect = 4e-06 Identities = 21/77 (27%), Positives = 40/77 (51%) Query: 1014 VARAAYGGIAAATALTMIPEVDKDKTIAVGIGGGTYRGYQAVALGATARITENIKVRAGV 1073 +++ G+A +AL+M+ + + +V G YR A+A+G +RIT+ +AGV Sbjct: 1 LSKELQTGLANQSALSMLVQPNGVGKTSVSAAVGGYRDKTALAIGVGSRITDRFTAKAGV 60 Query: 1074 GMSSGGTTAGIGASMQW 1090 ++ GAS+ + Sbjct: 61 AFNTYNGGMSYGASVGY 77
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-20 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 4/143 (2%) Query: 1 MSRQKVVLIYLIEDDEVQARCYAAILQHAGYSVRVLPDGERALREIQRAAPDLIVLDRRL 60 M+ +++ +DD L AGY VR+ + R I DL+V D + Sbjct: 1 MTGATILVA---DDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVM 57 Query: 61 PDIDGLEIIAWVRERCAPLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARV-N 119 PD + +++ +++ LP+LV++ ++A E GA DYL KP E + + Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 120 ALRRRASISKQFEGTIEIGGYRI 142 AL + E + G + Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLV 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 9e-19 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 1 MSAARKVLLVEDDEAQANWAKLVLTRGRFDVTHCQTGGQAIRAMTKEVPDAVVLDMRLPD 60 M+ A +L+ +DD A L+R +DV R + D VV D+ +PD Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 VHGLEVLVWIRRNFFDVPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIA 117 + ++L I++ D+PV+V+S M ++A GA DY+ KP E + I Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.011 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 376 SYNVYRNGNKVGSS-TSTAYTDAGLIAGTAYSYTVTEIDPSLGESA 420 +Y +YRN ++ S T T Y D L G Y+Y V ++ GESA Sbjct: 1260 TYTIYRNNTQIASGVTETTYRDPDLATGF-YTYGV-KVVYPNGESA 1303
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.4 bits (68), Expect = 0.032 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 213 RTEAPPRTASIVADLDALERFGWHDDAWLRARASLDLAHAPVSIYEVHPESWLRVAAEGN 272 + RT + A L+A RF D +L +A L + A Y + LRV EG Sbjct: 754 AVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRA--ANGLRVRDEGG 811 Query: 273 RSA 275 S Sbjct: 812 SSV 814
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.2 bits (63), Expect = 0.032 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 12/74 (16%) Query: 54 LGKAYLAGE------TADTEQIDREIEKLEAALREARKTQEGAAAAAALLEAKATTLLHE 107 + KA++ E + EIEKL AAL +++ A+ + ++ + Sbjct: 16 IAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSK------EELRAIKDQTEASMGAD 69 Query: 108 EGALRQQQAALARD 121 + + + D Sbjct: 70 KAEIFAAHLLVLDD 83
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 158 bits (400), Expect = 9e-48 Identities = 84/349 (24%), Positives = 144/349 (41%), Gaps = 46/349 (13%) Query: 6 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAI--ARIEKITGKTPAFHETDV 63 LVTG AG+IG H + LL G+ VV DNL + ++ AR+E + FH+ D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 64 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRI 123 +D + +F + AV S+ P Y +NL L++L R ++ + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 124 VFSSSATVYGVPERSPIDE----TFPLSATNPYGQTKLMAEQILRDVEAADPSWRVAT-- 177 +++SS++VYG+ + P P+S Y TK E + + + Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVS---LYAATKKANELM---AHTYSHLYGLPATG 175 Query: 178 LRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYI 237 LR+F G P G P ++ + A+ + + + V+ G RD+ Sbjct: 176 LRFFTVYG----------PWGRP-DMALFKFTKAMLEGKSIDVYN------YGKMKRDFT 218 Query: 238 HVVDLARGHIAALDALERRDASLTV---------------NLGTGRGYSVLEVVRAFEKA 282 ++ D+A I D + D TV N+G +++ ++A E A Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDA 278 Query: 283 SGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 331 G ++ +PGDV E A+ A E IG+ E ++ + W Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNW 327
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 72.1 bits (177), Expect = 8e-16 Identities = 53/301 (17%), Positives = 108/301 (35%), Gaps = 50/301 (16%) Query: 288 VMVTGAGGSIGSELCRQILKFQPAQLIAFD-LSEYAMYRLTEELRERFPDLPVVPIIGDA 346 +VTGA G IG + +++L+ Q++ D L++Y L + E D Sbjct: 3 YLVTGAAGFIGFHVSKRLLE-AGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 347 KDSLLLDQVMSRYAPHIVFHAAAYKHVPLMEELNAWQALRNNVLGTYRVARAAIRHDVRH 406 D + + + VF + V E N +N+ G + + ++H Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLE-NPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 407 FVLIST---------------DKAVNPTNVMGASKRLAE-MACQALQQTSARTQFETV-- 448 + S+ D +P ++ A+K+ E MA S Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTY----SHLYGLPATGL 176 Query: 449 RFGNVLGSAGS---VIPKFQQQIAKGGPVTV-THPEITRFFMTIPEASQLVLQA------ 498 RF V G G + KF + + +G + V + ++ R F I + ++ +++ Sbjct: 177 RFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 499 ------------SSMGQGGEIFILDMGEPVKIVDLARDLIRLYGFTEEQIRIEFSGLRPG 546 ++ ++ + PV+++D + L G + + L+PG Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGI---EAKKNMLPLQPG 293 Query: 547 E 547 + Sbjct: 294 D 294
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 107 bits (268), Expect = 6e-29 Identities = 68/344 (19%), Positives = 130/344 (37%), Gaps = 42/344 (12%) Query: 3 RVIVTGANGFVGRALCRALLAAGHEVTGL-------------VRRRGVCTEGVSEWVHEA 49 + +VTGA GF+G + + LL AGH+V G+ R + G H+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ--FHKI 59 Query: 50 D--DFDGVADRWPAGLQVDAVVHLAARVHMMRDRSPDPDAAFRASNVAATMRVARAARQQ 107 D D +G+ D + +G + V R+ + S + A+ SN+ + + R Sbjct: 60 DLADREGMTDLFASG-HFERVFISPHRLAV--RYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 108 GARRFVFLS--SVKAIAESDGGTPLCE-NSTPAPQDAYGRSKLEAERALEQLRDELSFDT 164 + ++ S SV + P +S P Y +K E Sbjct: 117 KIQHLLYASSSSVYGLNRKM---PFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPA 173 Query: 165 VIVRPPLVYGPGVRAN--FLSLMRAVSRGVPLPL-GAVRARRSMVYVDNLADAVMRCVTE 221 +R VYGP R + +A+ G + + + +R Y+D++A+A++R Sbjct: 174 TGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 222 PAATNGCFHVADSDMPPTIAEL-LDDIGHHLGRPARLLPVPERLLRVAGALTGRAAQ--- 277 + + V +IA + +IG+ P L+ ++ G A+ Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGN--SSPVELM----DYIQALEDALGIEAKKNM 287 Query: 278 IDRLTSDLR---LDTTHIRTVLDWRPPRSSEEGLAETACWFKSL 318 + D+ DT + V+ + P + ++G+ W++ Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 168 bits (428), Expect = 2e-51 Identities = 83/363 (22%), Positives = 136/363 (37%), Gaps = 58/363 (15%) Query: 13 KILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHASAVRPGALHEKAE----LVVAD 68 K LVTG AGFIG +S+RL + V +DNL+ + +++ L A+ D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDY-YDVSLKQARLELLAQPGFQFHKID 60 Query: 69 VTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDALVKHGIVV 128 + D L + E + SL +A N+ G + + + + Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK--I 118 Query: 129 EHILLTSSRAVYGEGAWQKDDGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRADRTEPRPT 188 +H+L SS +VYG +P D + P Sbjct: 119 QHLLYASSSSVYGLN------------------------------RKMPFSTDDSVDHPV 148 Query: 189 SVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSRLAREKKV 248 S+Y ATK A E + +S P + LR VYGP + F++ E K Sbjct: 149 SLYAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALF----KFTKAMLEGKS 204 Query: 249 IPLYEDGNVTRDFVSIDDVADAIVATLARTPEA-----------------LSLFDIGSGQ 291 I +Y G + RDF IDD+A+AI+ P A +++IG+ Sbjct: 205 IDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSS 264 Query: 292 ATSILDMARIIAAHYGAPEPQINGAFRDGDVRHAACDLSESLANLGWKPQWSLKRGIGEL 351 ++D + + G + + GDV + D +G+ P+ ++K G+ Sbjct: 265 PVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNF 324 Query: 352 QTW 354 W Sbjct: 325 VNW 327
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 30.3 bits (68), Expect = 0.007 Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 195 LFTMVLMFLSPVFYPASALPEKYRFWLELNPLTLFIEQSRGILLEGRVPDFHPLGLAFL 253 L ++FLS +P LP ++ PL+ I+ R I+L V D A Sbjct: 184 LVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALC 242
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.1 bits (67), Expect = 0.039 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 528 ANALSVANPAALTAAANTVAGTLARAANGTPVAGAIGGLVAALPVANPAGALTSAANNAA 587 A A A A AA A T A ANG+ VA A G + VA A +L A ++A Sbjct: 228 AEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGR--GLIQVAQGAASLAQAISDAI 285 Query: 588 STIATVAGTNPAAAIGGVA 606 + + V + P+ G A Sbjct: 286 AVLGRVLASAPSVMAVGFA 304
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 129 bits (326), Expect = 4e-37 Identities = 80/352 (22%), Positives = 136/352 (38%), Gaps = 52/352 (14%) Query: 4 RVLITGITGMVGSHLADFLLENTDWEIYGLCRWRSPLDNV-SHLLPRINEKNRIRL---- 58 + L+TG G +G H++ LLE ++ G+ DN+ + + + L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH-QVVGI-------DNLNDYYDVSLKQARLELLAQPG 53 Query: 59 ---VYGDLRDYLSIHEAVKQSTPDFVFHLAAQSYPKTSFDSPLDTLETNVQGTANVLEAL 115 DL D + + + VF + + S ++P ++N+ G N+LE Sbjct: 54 FQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 116 RKNNIDAVTHVCASSEVFGRVPREKLPIDEE-CTFHPASPYAISKVGTDLIGRYYAEAYN 174 R N I + +SS V+G K+P + HP S YA +K +L+ Y+ Y Sbjct: 114 RHNKIQHLL-YASSSSVYGL--NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 175 MTVMTTRMFTHTGPR-RGDVFAESTFAKQIAMIERGLIPPVVKTGNLDSLRTFADVRDAV 233 + R FT GP R D+ A F K + G V G + R F + D Sbjct: 171 LPATGLRFFTVYGPWGRPDM-ALFKFTKAML---EGKSIDVYNYGKM--KRDFTYIDDIA 224 Query: 234 RAYYMLVTINPI-----------------PGAYYNIGGTYSCTVGQMLDTLISMSTSKDV 276 A L + P P YNIG + + + L +D Sbjct: 225 EAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQAL------EDA 278 Query: 277 IRVETDPE--RLRPIDADLQVPNTRKFEAVTGWKPEISFEKTMEDLLNYWRA 326 + +E L+P D +T+ V G+ PE + + +++ +N++R Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 1e-07 Identities = 59/332 (17%), Positives = 105/332 (31%), Gaps = 82/332 (24%) Query: 1 MKVFLVGSTGYIGKTLFDA-CSRRWRTLGT-STRDGADIVFSLARAEAFPYEQVSA--GD 56 MK + G+ G+IG + + +G + D D+ AR E D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 57 ------------------VVAVAA------AISSPDACAKDYETAFQVNVTGTLTLIRGV 92 V ++ +P A Y N+TG L ++ G Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA----Y---ADSNLTGFLNILEG- 112 Query: 93 VARGA---RVIFFSSDTVYGASEQLLSEEAELT--PAGAYGAMKRRVEA---ELGENAAV 144 R +++ SS +VYG + ++ + P Y A K+ E + Sbjct: 113 -CRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 145 KVIRLSY--VFSLRDR-------FTQYLLGCAKEGKRADIFK--PFSRCVVYLSDVVEGV 193 L + V+ R FT+ +L EGK D++ R Y+ D+ E + Sbjct: 172 PATGLRFFTVYGPWGRPDMALFKFTKAML----EGKSIDVYNYGKMKRDFTYIDDIAEAI 227 Query: 194 VSLIE-------RWD---------AIDERVINFVGPELVAREDFVEKIRNLAAPELDYGF 237 + L + +W RV N V D+++ + + E Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 238 SEP-EGDFFVNRPRIINVSSARFEKLLGRRPR 268 GD + + +++G P Sbjct: 288 LPLQPGDVLETSA---DTKALY--EVIGFTPE 314
>PF05043#Transcriptional activator Length = 493 Score = 31.1 bits (70), Expect = 0.005 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 140 RHLEEIGASLRIDIDE---IESWCVDELKTREVGENDGGKQIDISVTDFILANCRQKRLF 196 H + + +L +E W EL + + DI +++FI+ KRL Sbjct: 414 YHAKFVAETLSYYCSNNFELEVWTELELSKESLED----SPYDIIISNFIIPPIENKRLI 469 Query: 197 YTMNHPTAALMREIAA 212 Y+ N T +L+ + A Sbjct: 470 YSNNINTVSLIYLLNA 485
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 38.0 bits (88), Expect = 2e-05 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 7/139 (5%) Query: 88 MAVTPNLALMYHRNVKVIDIFIARILLEVVGNTASFFVLMITFHALGLVDYPEDILEVMF 147 M M + +++ DI + + + + + ALG + +++ Sbjct: 94 MEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLS----LLY 149 Query: 148 AWVMIIWFG---ASLGFIIGALSEKTELVEKLWHPVTYLMFPLSGAIFMVDWLSPAFQKI 204 A +I G ASLG ++ AL+ + V + LSGA+F VD L FQ Sbjct: 150 ALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTA 209 Query: 205 VLWLPMVHGVEMLREGYFG 223 +LP+ H ++++R G Sbjct: 210 ARFLPLSHSIDLIRPIMLG 228
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 135 bits (342), Expect = 3e-37 Identities = 81/382 (21%), Positives = 138/382 (36%), Gaps = 71/382 (18%) Query: 5 IGIDLGTTNSCVAIMEGNQVKVIENSEGARTTPSIIAYMDDNEVL-VGAPAKRQSVTNPK 63 + IDLGT N+ + + V + R V VG AK+ P Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD----RAGSPKSVAAVGHDAKQMLGRTPG 68 Query: 64 NTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIKADNGDAWVEAHGEKLAPPQVSAEVLRK- 122 N + A++ + + V D V+ ++L+ Sbjct: 69 N-IAAIRPM------KDGVIADF---------------------------FVTEKMLQHF 94 Query: 123 MKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 182 +K+ + P ++ VP +R+A +++ + AG +I EP AAA+ GL Sbjct: 95 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 154 Query: 183 KAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDYII 242 +E V D+GGGT +V++I + V + +GG+ FD+ II+Y+ Sbjct: 155 VSE--ATGSMVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINYVR 203 Query: 243 GEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSS----QQTEINLPYITADASGPKHLN 298 + G + AE+ K E+ S+ + EI + P+ Sbjct: 204 RNYGSLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFT 250 Query: 299 LKVTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDD--VILVGGQTRMPKVQEKVKE 356 L + LEAL E L + SDI + ++L GG + + + E Sbjct: 251 LN-SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLME 309 Query: 357 FFGKEPRRDVNPDEAVAVGAAI 378 G +P VA G Sbjct: 310 ETGIPVVVAEDPLTCVARGGGK 331
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.002 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%) Query: 2 ENTQENPTDQTTEETGREAQAAEPAAQAAENAAPAAEAA--------LAEAQAKIAELQE 53 T E TE T + + A+ A + E A + K E Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 54 SFLRAKAETENVRRRAQ 70 +AK ETE + + Sbjct: 1108 KEEKAKVETEKTQEVPK 1124
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.035 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 25 LASLAACIAKRGFEVVFEADTAQAIGSAGYPALTP---AEIGARADVAVVLGGDGTMLGM 81 S+ + F ++ A Q G+A +PAL A + + G G+++ M Sbjct: 91 FGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAM 150 Query: 82 GRQLAPYKTPLIG---INHGRLGFITDIP 107 G + P IG ++ ++ IP Sbjct: 151 GEGVG----PAIGGMIAHYIHWSYLLLIP 175
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.007 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 61 CVALTGPSGAGKSTLLRCLYGNYLANRGTIAVRAGARAAEHVV-LTASEPHEVIALRRDV 119 V L G G GKSTL+ L G + + G + E + + A E E+ A RR Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAFRRAD 657 Query: 120 IGYVSQFL 127 V F Sbjct: 658 AEAVKAFF 665
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.040 Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 14 IEIDDVIVGLLAI-RLNLPENADPRDAISRHLSEAGGP 50 + +DD IV + + R+ + + P++A + +S+ G Sbjct: 404 LLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGA 441
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.002 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 29 VVVVCGPSGSGKSTLIKTVNGLEPFQQGEILVNGQSVGDKKTNLSKLRSKVGM 81 VV+ G G GKSTLI T+ GL+ F +G K + ++ V Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLDFFSDTHF-----DIGTGKDSYEQIAGIVAY 645
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 123 bits (310), Expect = 3e-36 Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 8/249 (3%) Query: 26 GRAVLITGGATGIGASFVEHFARQGARVAFVDLDEKAGRALVARLADAAHEPVFVVCDLT 85 G+ ITG A GIG + A QGA +A VD + + +V+ L A D+ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 86 DIGALRGAIDAIRVRIGPIAVLVNNAANDVRHAVADVTPESFDASIAVNLRHQFFAAQAV 145 D A+ I +GPI +LVN A + ++ E ++A+ +VN F A+++V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 146 IDDMKRLGGGAIVNLGSIGWMLKNAGYPVYATAKAAVQGLTRALARELGPFGIRVNTLVP 205 M G+IV +GS + YA++KAA T+ L EL + IR N + P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 206 GWVMTDKQRRLWLDDAGRAAIKAGQCIDAEL--------LPGDLARMALFLAADDSRLIT 257 G TD Q LW D+ G + G + P D+A LFL + + IT Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 258 AQDVVVDGG 266 ++ VDGG Sbjct: 248 MHNLCVDGG 256
>PF06438#Heme acquisition protein HasAp Length = 205 Score = 29.1 bits (65), Expect = 0.028 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 4 NGGDVAAALRFDNIGKVFPGVRALDGISFDVQAGQVH----GLMGENGAGKSTLLKILGG 59 GG + D+ F + LD + G VH GLM + + + L Sbjct: 99 TGGASSGGYALDSQEVSFSNL-GLDSPIAQGRDGTVHKVVYGLMSGDSSALQGQIDALLK 157 Query: 60 EYQP-----DSGSVLVDGRAMRFPSAAASIAAGVAVI 91 P + L + A+ AA V V+ Sbjct: 158 AVDPSLSINSTFDQLAAAGVAH--ATPAAAAAEVGVV 192
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 26.8 bits (59), Expect = 0.017 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 24 NQQRQIFIQLQRAQSQEHQLQQDYAQLQYQQSA-------LSKTSRIEQLATSSLKMQ 74 NQ F+ +AQ Q+ Q QQ AQ Q++ L+ + +I QL +K+Q Sbjct: 328 NQIHLNFVMPPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKDLVKLQ 385
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 88.3 bits (219), Expect = 1e-21 Identities = 90/394 (22%), Positives = 139/394 (35%), Gaps = 71/394 (18%) Query: 1 MKKSLLALVALSAFAGAAHAQSSVTLYGIIDEGFNINTNAGGKHL-----YNLSSGVMQG 55 MKKSL+AL L+A AA A VTLYG I G + + + V G Sbjct: 1 MKKSLIALT-LAALPVAAMAD--VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 56 SRWGLRGTEDLGGGLKALFVLENGFDVNSGKLNQGGLEFGRQAYVGLSSGFGTVTLGRQY 115 S+ G +G EDLG GLKA++ +E + G RQ+++GL GFG + +GR Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGN----RQSFIGLKGGFGKLRVGRLN 113 Query: 116 DSVVDF--VGPLEA-GDQWGGYIAAHPGDLDNFNNAYRVNNAVKFTSANYGGFTFGGLYS 172 + D + P ++ D G A P + + V++ S + G + Y+ Sbjct: 114 SVLKDTGDINPWDSKSDYLGVNKIAEP---EARLIS------VRYDSPEFAGLSGSVQYA 164 Query: 173 FGGVAGDFSRNQTWSLGAGYTNGPLVLGVGYLNARTPSTAGGLFGNNTTSSTPAAVTTPV 232 AG ++++ G Y NG + G R + + Sbjct: 165 LNDNAG-RHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHR-------L 216 Query: 233 YAGYASAHTYQVIGAGGAYSFGAATVGITYSNIKFMNFASTVFPNQTATFNNAEINFKYQ 292 +GY + Y A A A + + + T + N + Sbjct: 217 VSGYDNDALY----ASVAVQQQDAKL-VEENYSHNSQTEVAA----TLAYRFG--NVTPR 265 Query: 293 LTPTLLAGAAYDYTQGSKIAGSSAAKYHQGSVGVDYFLSKRTDVYAIGVYQHASGNVIEA 352 ++ ++D T + Y Q VG +Y SKRT + E Sbjct: 266 VSYAHGFKGSFDATNYNND-------YDQVVVGAEYDFSKRTSALVSAGWLQ------EG 312 Query: 353 DGNTVGPATAAINGLTPSSNRNQFAARVGIRHKF 386 G S A VG+RHKF Sbjct: 313 KG---------------ESKFVSTAGGVGLRHKF 331
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.011 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 10/204 (4%) Query: 7 AKLSGVVLACGIIAGCASQPTPPTTEAFNKSLADADAVAKTGDQERAIGLYQQLAKSDPT 66 K + V I Q P+ + N+ +A D A ++ + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVP-PPAPATPSETTETVAENS 1044 Query: 67 REEPWSRIAQIQFQQGHYGQAIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQD 126 ++E + Q Q A+EA K + Q VA T+ Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT---NEVAQSGSETKETQTTETK 1101 Query: 127 SSLAGDAKSDAQALAKQLRDTLGEAALFPPEQQATKPVVKKRRIVRRAKPVHEAPRAAES 186 + + + A+ ++ ++ + P+Q+ + + +A+P E Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQE------QSETVQPQAEPARENDPTVNI 1155 Query: 187 ETAAAPATPPAAPAQPAATPAPAP 210 + + A QPA + Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNV 1179 Score = 28.5 bits (63), Expect = 0.029 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 32/191 (16%) Query: 23 ASQPTPPTTEAFNKSLADADAVAKTGDQERAIGLYQQLAKSDPTREEPWSRIAQIQFQQG 82 + T P N AD +V ++ I + P P + Sbjct: 994 TTNITTP-----NNIQADVPSVPSNNEE---IARVDEAPVPPPAPATPSETTETV----- 1040 Query: 83 HYGQAIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQDSSLAGDAKSDAQALAK 142 A + QE+ +K ++ A A +A E+ ++ ++ A+S ++ Sbjct: 1041 ----AENSKQESKTVEKNEQDATETTAQNR-EVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 143 QLRDTLGEAALFPPEQQATKPVVKKRRIVRRAKPVHEAPRAAESETAAAPATPPAAPAQP 202 Q +T ++ AT +K ++ E P+ + +P + QP Sbjct: 1096 QTTET---------KETATVEKEEKAKVETEKT--QEVPKVT---SQVSPKQEQSETVQP 1141 Query: 203 AATPAPAPAKA 213 A PA Sbjct: 1142 QAEPARENDPT 1152 Score = 28.1 bits (62), Expect = 0.038 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 22/130 (16%) Query: 87 AIVAAQEALQRDKTDRQAKSVLAVAGLRIATESLGELRQDSSLAGDAKSDAQALAKQLRD 146 I A ++ + + V AT S ++A ++K +++ + K Sbjct: 1002 NIQADVPSVPSNNEEIARVDEAPVPPPAPATPS----ETTETVAENSKQESKTVEKN--- 1054 Query: 147 TLGEAALFPPEQQATKPVVKKRRIVRRAKP-VHEAPRAAESETAAAPATPPAAPAQPAAT 205 EQ AT+ + R + + AK V + E A + Q T Sbjct: 1055 ----------EQDATETTAQNREVAKEAKSNVKANTQTNE----VAQSGSETKETQTTET 1100 Query: 206 PAPAPAKAAG 215 A + Sbjct: 1101 KETATVEKEE 1110
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.7 bits (79), Expect = 0.002 Identities = 50/368 (13%), Positives = 122/368 (33%), Gaps = 53/368 (14%) Query: 121 SKNKEIEVEIDKLEDELGSVENKTGLRHSYQEKKKAHADKKKAAQDAQDELDKKIFDKAN 180 + +++ L ++ ++ + ++ + + A L+ + A Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAA 155 Query: 181 KNPTGIKHNSLYKDANYDVR----KLKLDIKTVQDKKIAPLDDADRSSKVKLLSEVALPD 236 + K + + L+ + ++ ++ + + + Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 237 IEKRLSFNSSLPALAKSTVELITKKIKPSAPIQELLNDAILQNWVKSGIPLHEATRETCG 296 +E + +L A + + + S + + Sbjct: 216 LEAEKA---ALAARKADLEKALEGAMNFSTADSAKIKTLEAEK----------------- 255 Query: 297 FCGSPLPADLWKRLGDHFNQESQDLEKDLDSVLTKISNEKTRIKNVVTVDRKNFYSANQA 356 +LEK L+ + + + +IK + A +A Sbjct: 256 ---------------AALEARQAELEKALEGAMNFSTADSAKIKTL---------EAEKA 291 Query: 357 TFDNLKADLDDAINNHEKSLQSLEDELNAR---KKDIFTERSTIDVQDNTVSISQKVSLV 413 + KADL+ + QSL +L+A KK + E ++ Q N +S + + SL Sbjct: 292 ALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQ-NKISEASRQSLR 350 Query: 414 NELIERNNKTTTSLEEDQKIARNELRLSEISQFTIDIDLAGEEKKIKALEDQITKAKDEL 473 +L + + + LE + + + ++SE S+ ++ DL + K +E + +A +L Sbjct: 351 RDL-DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKL 409 Query: 474 DAVEAEGK 481 A+E K Sbjct: 410 AALEKLNK 417 Score = 32.3 bits (73), Expect = 0.008 Identities = 40/364 (10%), Positives = 95/364 (26%), Gaps = 43/364 (11%) Query: 127 EVEIDKLEDELGSVENKTGLRHSYQEKKKAHADKKKAAQDAQDELDKKIFDKANKNPTGI 186 ++K+++ E + + K D E +K KN + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 187 KHNSLYKDANYDVRKLKLDIKTVQDKKIAPLDDADRSSKVKLLSEVALPDIEKRLSFNSS 246 + + ++ + + + ++ + Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL-----AARKADLEKA 163 Query: 247 LPALAKSTVELITKKIKPSAPIQELLNDAILQNWVKSGIPLHEATRETCGFCGSPLPADL 306 L + K A L E + L Sbjct: 164 LEGAMNFSTADSAKIKTLEAEKAALEARQ------------AELEKA------------L 199 Query: 307 WKRLGDHFNQESQDLEKDLDSVLTKISNEKTRIKNVVTVDRKNFYSANQATFDNLKADLD 366 + ++ + + ++ SA T + KA L+ Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 367 DAINNHEKSLQSLEDELNARKKDIFTERSTIDVQDNTVSISQKVSLVNELIERNNKTTT- 425 EK+L+ + A I T + + + ++++ N ++ Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAE---KADLEHQSQVLNANRQSLRR 316 Query: 426 ----------SLEEDQKIARNELRLSEISQFTIDIDLAGEEKKIKALEDQITKAKDELDA 475 LE + + + ++SE S+ ++ DL + K LE + K +++ Sbjct: 317 DLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 376 Query: 476 VEAE 479 EA Sbjct: 377 SEAS 380
>cloacin#Cloacin signature. Length = 551 Score = 35.5 bits (81), Expect = 5e-04 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 302 GAAASAGSAVMAGATSAAGGASALKAAFQSAQQHAAQGAGNFSGSGGSGSGAIGGSSGGA 361 A S + G T G A + S++ + G G GSG G+ GG Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG--HGNGGGN 68 Query: 362 SSSSGGSGSFGSFMSNAGRVAADMGSSLANGASQVAKEKAASMMDSA 408 +S GGSG+ G+ + A VA + GA +A +A + +A Sbjct: 69 GNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAA 115
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 28.2 bits (62), Expect = 0.038 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 4/122 (3%) Query: 134 DAQRQALADAQVNGSEAQKRANDAVLKGVDQQQQTLVTDAANLRSLQAQASSAQGQMQAI 193 + Q++AL + +AQK D +++++ + ANL +L S+ Q Sbjct: 142 EEQKKALEKEKEAKEQAQKAQKDKR----EKRKEERAKNRANLENLTNAMSNPQNLSNNK 197 Query: 194 QAANQLASAQTNQLLQLRGLLVAQQAAAATRAQIVADREAQQAAAGVQLRDGSNVTHSAP 253 + + + N+L Q+ L Q+ A A + + + +QA V+ R ++ Sbjct: 198 NLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTD 257 Query: 254 KS 255 KS Sbjct: 258 KS 259
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 25.8 bits (56), Expect = 0.049 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 3 RTMSAAAAAMAVVSCAMAAAPAAHADAGDGLKVARSNACMGCHAVDRKLVGPSFQQIAER 62 R +SAAAAA+ V+ A A +A A + + VD V PS IA Sbjct: 6 RIVSAAAAALLAVAPIAATAMPVNAATTINADSAINANTNAKYDVD---VTPSISAIAAV 62 Query: 63 YKND 66 K+D Sbjct: 63 AKSD 66
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 105 bits (263), Expect = 8e-27 Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 20/254 (7%) Query: 217 NELVIVGSRDEVAMLRKLVPDLDTAPGEVVVRGWVYEVANTDSANSAWSIAVRLLSGQL- 275 N LV+ +D + L + + +D ++++ G ++EV D+ + +S A G + Sbjct: 170 NLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDALD--FSFAAGSQRGTVA 227 Query: 276 ------RLSSGDTSSDASAMRFTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNV 329 RL+S +S+ S F G + ++ AL +S K++S P + +SG++ ++V Sbjct: 228 GGVNTDRLTSVLSSAGGSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISV 287 Query: 330 GQQVP--TQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVM-RDVIELKVREEISDFVAT 386 GQ VP T + P Q++ Q+ G+ V P M I L + + ++ Sbjct: 288 GQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSS 347 Query: 387 KTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARSGYSWLPS------FFDGR 440 D N R + T L+DG+ ++LGGL ++ + SG +L F R Sbjct: 348 TQASDV--ITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSR 405 Query: 441 SSSKQRTEVLLVLQ 454 S S + + + ++++ Sbjct: 406 SDSNEESTLYVLVK 419
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 74.0 bits (181), Expect = 5e-16 Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 25/192 (13%) Query: 395 QVVIDPNVQPDPNANPNPNPGTNPGTNPGTNPGTNPGTNPGTNPGTNPSTNPGTDPSTNP 454 QV+ P++ P PN P P +P NP NP P NPGT P NP DP NP Sbjct: 308 QVIPRPDLTPGSAEAPNAQP--LPEVSPAENPANNP--APNENPGTRP--NPEPDPDLNP 361 Query: 455 GTNPGTNPGTNPGTNPDPKPDP----------KPDPKPDPKFCALYPDASACAPLGSAN- 503 NP T+ PGT PD P + + + C +PD AC L N Sbjct: 362 DANPDTD--GQPGTRPDSPAVPDRPNGRHRKERKEGEDGGLLCKFFPDILACDRLPEPNP 419 Query: 504 --DVDVRRESKSVSLAPISIGLTNGVCPHP--YEVEVFGAPLRFDYA--PICELAAKLRP 557 D+++ E+ +V I + CP P + V V + +F ++ C +A +LR Sbjct: 420 AEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFSFENACTIAERLRY 479 Query: 558 LVLLLGALLAGL 569 ++L L +A Sbjct: 480 MLLALAWAVAAF 491
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 26.8 bits (59), Expect = 0.035 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%) Query: 5 ATIARPYAEALFRVAEGGDISAWSTLVQELAQVAQLPEVLSVASSPKVSRTQ--VAELLL 62 AT + A+A+F+ GGD+S +Q++ + +P L+V ++ RT+ + ELL Sbjct: 28 ATTTKSAADAVFQQLGGGDVSG---AMQDIDLIMDIPVKLTV----ELGRTRMTIKELLR 80 Query: 63 AALKSPLASGAQAKNFVQMLVDNHRIA 89 S +A A + +L++ + IA Sbjct: 81 LTQGSVVALDGLAGEPLDILINGYLIA 107
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 109 bits (275), Expect = 2e-35 Identities = 45/88 (51%), Positives = 58/88 (65%) Query: 2 NKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTGR 61 NKQ+LI VA T +K + +D + + ++KG+ VQLIGFG+F +RAAR GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPKTGETIKIPAAKTVKFTAGKAFKDAV 89 NP+TGE IKI A+K F AGKA KDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 403 bits (1037), Expect = e-133 Identities = 215/691 (31%), Positives = 324/691 (46%), Gaps = 88/691 (12%) Query: 13 TALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERPV 72 T L+ A ++ AA + + +F DI + + KT+I+DP V+G + + + + Sbjct: 13 TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72 Query: 73 PEDQALKTLQSALRMQGFALV-QDHGVLKVVPEADAKLQGVPTYIGNAPQARGDQVVTQV 131 E+Q + S L + GFA++ ++GVLKVV DAK VP AP GD+VVT+V Sbjct: 73 NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGI-GDEVVTRV 131 Query: 132 FELRNESANNLLPVLRPLI--SPNNTITAYPANNTIVVTDYADNVRRIAQIIAGVDSAAG 189 L N +A +L P+LR L + ++ Y +N +++T A ++R+ I+ VD+A Sbjct: 132 VPLTNVAARDLAPLLRQLNDNAGVGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGD 191 Query: 190 SQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNAQRLA 249 V VPL A+A D+ +T+L + ++ V AD RTNA+L+ R Sbjct: 192 RSVVTVPLSWASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSR-Q 250 Query: 250 TAKKIAQQLDAPSGVPGNMHVVPLRNAEAVKLAKTLRGMLGKGGGESGSSASSNDANAFN 309 + +QLD GN V+ L+ A+A L + L G+ Sbjct: 251 RIIAMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGIS-------------------- 290 Query: 310 QGGSQSGSNFSTGASGTPPLPSGLSSNSSGGAGGTTGGGGLGNAGLLGGDKDKGDDNQPG 369 S + S + Sbjct: 291 ---------------------STMQSEKQAAKPVAALDKNI------------------- 310 Query: 370 GMIQADAASNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELQATTSANLGIQWQ 429 +I+A +N+LI+TA+ V +L VI QLD RR QV +EA++ E+Q NLGIQW Sbjct: 311 -IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWA 369 Query: 430 VANNALYAGTNLVTGQTGLGNSIVNLTAGAVT--NPGGTLGSLG---SITNGLNIGWLHN 484 N +T T G I AGA G SL S NG+ G Sbjct: 370 NKNAG-------MTQFTNSGLPISTAIAGANQYNKDGTVSSSLASALSSFNGIAAG---- 418 Query: 485 MFGVQGLGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTA 544 F LL + S+ ++L+TP++VTLDN EA VGQ VP+ TGS + + Sbjct: 419 -FYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGS----QTTSGD 473 Query: 545 NAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQ 604 N FNT +R+ VG+ L VKPQI EG + L++ E S+V +++++ G TF R++ Sbjct: 474 NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSV-ADAASSTSSDLGATFNTRTVN 532 Query: 605 STVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPV 664 + VL +GE +V+GGL+ + + KVPLLGDIP IG LFRS K K NLM+F+RP Sbjct: 533 NAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPT 592 Query: 665 IINDRETAQAVTSNRYDYIQGVTGAYKSDNN 695 +I DR+ + +S +Y + N Sbjct: 593 VIRDRDEYRQASSGQYTAFNDAQSKQRGKEN 623
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 134 bits (338), Expect = 3e-43 Identities = 78/126 (61%), Positives = 97/126 (76%), Gaps = 3/126 (2%) Query: 41 AMDD-WAAALAEQNQQPIETGATGAGVFRPLSKATASSTHNDIDLILDIPVKMTVELGRT 99 A+DD WA AL EQ ++ A VF+ L S DIDLI+DIPVK+TVELGRT Sbjct: 14 ALDDLWADALNEQKATTTKSAADA--VFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRT 71 Query: 100 KIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSER 159 ++ I+ LL+L QGSVV LDGLAGEP+D+L+NG LIAQGEVVVV DK+G+R+TDIITPSER Sbjct: 72 RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131 Query: 160 IRKLNR 165 +R+L+R Sbjct: 132 MRRLSR 137
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 288 bits (739), Expect = e-101 Identities = 153/242 (63%), Positives = 192/242 (79%), Gaps = 1/242 (0%) Query: 11 RWLPAILIGLAPALACAQAAGLPAFNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 R L + L + A LP S P P GG ++SL VQT++ +T L+F+PA+LLMM Sbjct: 3 RLLSVAPVLLW-LITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMM 61 Query: 71 TSFTRIIIVLSLLRQAIGTASTPPSQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTL 130 TSFTRIIIV LLR A+GT S PP+QVL+GLALFLT F+MSPV+D+ Y DAY+PFSE + Sbjct: 62 TSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKI 121 Query: 131 QMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAPMQGPEDVPLSLLVPAFVTSELKT 190 M +A+++G P + FML+QTRE DL LFA+++ P+QGPE VP+ +L+PA+VTSELKT Sbjct: 122 SMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKT 181 Query: 191 GFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQ 250 FQIGFTIFIPFLIID+V+ASVLM++GMMMV PAT++LPFKLMLFVLVDGWQLL+GSLAQ Sbjct: 182 AFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQ 241 Query: 251 SF 252 SF Sbjct: 242 SF 243
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 68.6 bits (168), Expect = 4e-19 Identities = 26/85 (30%), Positives = 46/85 (54%) Query: 4 ENVMTLAHQAMYIGLLLAAPLLLVALAVGLVVSLFQAATQINEATLSFIPKLLAVAATMV 63 ++++ ++A+Y+ L+L+ +VA +GL+V LFQ TQ+ E TL F KLL V + Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 IAGPWMLSTMIDYLRETLLRVATLG 88 + W ++ Y R+ + G Sbjct: 62 LLSGWYGEVLLSYGRQVIFLALAKG 86
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 162 bits (411), Expect = 3e-51 Identities = 117/250 (46%), Positives = 158/250 (63%), Gaps = 1/250 (0%) Query: 1 MFSVTYAQLNGWLTAFLWPFVRMLALVAIAPVTGHRSTPVRVKIGLAGFMALVVAPTLPP 60 M VT Q WL + WP +R+LAL++ AP+ RS P RVK+GLA + +AP+LP Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 IPVATVFSAQGVWIIVNQFLIGAALGFTMQIVFAAIEAAGDIIGLSMGLGFATFFDPHSS 120 V VFS +W+ V Q LIG ALGFTMQ FAA+ AG+IIGL MGL FATF DP S Sbjct: 61 NDVP-VFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119 Query: 121 GATPVMGRFLNAVAILAFLAFDGHLQVFAALVDSFRLVPVSANLLRAAGWQTLVAFGAAI 180 PV+ R ++ +A+L FL F+GHL + + LVD+F +P+ L + + L G+ I Sbjct: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179 Query: 181 FEMGLLLALPVVAALLIANLALGILNRAAPQIGIFQVGFPVTMLVGLLLVQLMAPNLIPF 240 F GL+LALP++ LL NLALG+LNR APQ+ IF +GFP+T+ VG+ L+ + P + PF Sbjct: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPF 239 Query: 241 VGRLFDTGVD 250 LF + Sbjct: 240 CEHLFSEIFN 249
>PF06580#Sensor histidine kinase Length = 349 Score = 54.5 bits (131), Expect = 3e-10 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 22/128 (17%) Query: 334 RIDLGAELDDDLQVAGSESLLSALLMNLVDNAVRYAHE----GGRVTVSARRDGDAVVLE 389 R+ +++ + + L+ LV+N +++ GG++ + +D V LE Sbjct: 239 RLQFENQINPAIM---DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 390 VVDDGPGIPAEARPHVFKRFYRVARDEEGTGLGLAIVEE-IAQSHGGAVSLATGPGNRGV 448 V + G +E TG GL V E + +G + V Sbjct: 296 VENTGSLALKN--------------TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 449 RMTVRLPA 456 V +P Sbjct: 342 NAMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.1 bits (239), Expect = 3e-25 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61 +L+ +D+A + + L G+ V + + + A D ++ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARI-RALIRRQ 119 LL R+++ ++PVL+++A + + GA DY+ KPF+ EL+ I RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 64.1 bits (156), Expect = 1e-13 Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 28/228 (12%) Query: 1 MKRQYLALSIATAACAAPQAHAQSSVQLYGLIDLSVPTYRSHANAKGDHVIGMGLGGEPW 60 MK+ +AL++A AA + V LYG I V T RS A+ G + G Sbjct: 1 MKKSLIALTLAALPVAA-----MADVTLYGTIKAGVETSRSVAH-NGAQAASVETGTGIV 54 Query: 61 FSGSRWGLKGAEDIGGGTKVIFRLESEYTVADGNMEDPGQIFDRDAWVGVENDTFGKLTA 120 GS+ G KG ED+G G K I+++E + ++A + +R +++G++ FGKL Sbjct: 55 DLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTD----SGWGNRQSFIGLKGG-FGKLRV 109 Query: 121 GFQNTIARDAAAIYGDPYGSAKLTTEEGGWTNANNFKQMIFYAAGATGTRYNNGLAWKKL 180 G N++ +D I +P+ S RY++ + Sbjct: 110 GRLNSVLKDTGDI--NPWDSKSDYLGVNKIAEPEARL---------ISVRYDS----PEF 154 Query: 181 FGNGIFASAGYAFSNSTSFGQNSTYQVALGYNGGPFNVSGFFSHVNHA 228 G+ S YA +++ + +Y Y G F V ++ H Sbjct: 155 A--GLSGSVQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHH 200
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 74.5 bits (183), Expect = 5e-17 Identities = 80/356 (22%), Positives = 118/356 (33%), Gaps = 75/356 (21%) Query: 1 MKK--FAVAAAGLAVATGAHASDGSVTLFGLIDAGVSYVSNEGGKRNVYFDDGIAVPNLW 58 MKK A+ A L VA A VTL+G I AGV + + Sbjct: 1 MKKSLIALTLAALPVAAMA-----DVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVD 55 Query: 59 -----GLRGTEDLGGGAKAIFELTSQYALGNGAALPTPGSMFSRTALVGLWSERLGSVTL 113 G +G EDLG G KAI+++ + T +R + +GL G + + Sbjct: 56 LGSKIGFKGQEDLGNGLKAIWQVEQ-----KASIAGTDSGWGNRQSFIGLKGG-FGKLRV 109 Query: 114 GQQYDFMTDSLTFGSFDGAFRYGGLYNFRQGPFSKLGIPDNPTGSFDFDRLAGSSRVPNS 173 G+ + D+ +D Y G+ + P+ S Sbjct: 110 GRLNSVLKDTGDINPWDSKSDYLGVNKIAE--------PEA---------------RLIS 146 Query: 174 VKYTSANLNGLVFGLMYGFGNQAGGGLAANSTVSAGLKYETGSFAL--GAAYVEVKYPQM 231 V+Y S GL + Y + AG + + AG Y+ G F + G AY Q Sbjct: 147 VRYDSPEFAGLSGSVQYALNDNAGRH--NSESYHAGFNYKNGGFFVQYGGAYKRHHQVQE 204 Query: 232 NNGHDGLRNWGLGARYALSAFDLNL-LYTNTRNT--LTGAAIDVIQAGVRYVGAPWTIGA 288 N + + L + Y L + ++ + Q V A Sbjct: 205 NVNIEKYQIHRLVSGY--DNDALYASVAVQQQDAKLVEENYSHNSQTEV---------AA 253 Query: 289 NYEYMKGNAQLDRNYAH----------------QVTATAQYALSKRTSAYVETVYQ 328 Y GN +YAH QV A+Y SKRTSA V + Sbjct: 254 TLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWL 309
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 44.0 bits (104), Expect = 3e-07 Identities = 36/178 (20%), Positives = 60/178 (33%), Gaps = 34/178 (19%) Query: 87 RALDAGARTLMFPGVETADEAAHAVRLTRFQAPDAPDGLRGVAGIVRAAAYGMRRDYVQT 146 RA G +MFP + T +E LR I++ + + V Sbjct: 380 RASTYGNLKVMFPMIATLEE------------------LRQAKAIMQEEKDKLLSEGVDV 421 Query: 147 ANAQIATIVQIESARGVDEAERIAATPGVDCVFVGPADL----------SASLGHLGDTK 196 ++ I + +E A A VD +G DL + + +L Sbjct: 422 SD-SIEVGIMVEIPSTAVAANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPY 478 Query: 197 HPDVAAALEHVLAAGRRAGVPVGI---FAADTAGARQSLEAGFRVVALSADVVWLLRA 251 HP + ++ V+ A G VG+ A D L G ++SA + R+ Sbjct: 479 HPAILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARS 536
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 2e-04 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 9/88 (10%) Query: 681 SGADGASGASGASGASG--------ASGASGASGAGGEPTEHANAGGNSAGGGIAGGAAG 732 SG DG +GA SG GAS G +E+ GG S G GG +G Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 733 TANNGSGAAAPGGM-PGANGAATGAPPA 759 N G + GG G N +A AP A Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 37.4 bits (86), Expect = 2e-04 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 2/82 (2%) Query: 681 SGADGASGASGASGASGASGASGASGAGGEPTEHANAGGNSAGGGIAGGAAGTANNGSGA 740 +G GAS SG S + G G + GN G G +GG +GT N S Sbjct: 25 TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAV 84 Query: 741 AAPG--GMPGANGAATGAPPAS 760 AAP G P + G S Sbjct: 85 AAPVAFGFPALSTPGAGGLAVS 106
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.5 bits (63), Expect = 0.046 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 293 KAAKGKKATKGADKSAKAADKGADKDKGAKPAAAPPVPARSRPAGPAQPAAPLKPATAPS 352 K + +KA A A+A A K+K AK A + + P A P Sbjct: 424 KLTEKEKAELQAKLEAEAK---ALKEKLAKQAEELAKLRAGKASDSQTPDAKPGNKAVPG 480 Query: 353 PGAP 356 G Sbjct: 481 KGQA 484
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 504 bits (1300), Expect = 0.0 Identities = 247/348 (70%), Positives = 294/348 (84%), Gaps = 2/348 (0%) Query: 1 MFGFLRSYFSNDLAIDLGTANTLIYMRGKGIVLDEPSVVSIRQEGGPNGKKTIQAVGKEA 60 M R FSNDL+IDLGTANTLIY++G+GIVL+EPSVV+IRQ+ K++ AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRA-GSPKSVAAVGHDA 59 Query: 61 KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMIKQFIKTAHESRMFSPSPRIIICVPCGST 120 KQMLG+ PGNI AIRPMKDGVIADF VTE+M++ FIK H + PSPR+++CVP G+T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 QVERRAIKEAAHGAGASQVYLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVGVISLG 180 QVERRAI+E+A GAGA +V+LIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEV VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GIVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSAFPGSEVKEMEVKGR 240 G+VY SVR+GGD+FDEAI+NY+RRNYG LIGE TAE IK EIGSA+PG EV+E+EV+GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 NLSEGIPRSFTISSNEILEALTDPLNQIVSSVKIALEQTPPELGADIAERGMMLTGGGAL 300 NL+EG+PR FT++SNEILEAL +PL IVS+V +ALEQ PPEL +DI+ERGM+LTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 LRDLDRLLAEETGLPVLVAEDPLTCVVRGSGMALERMDKL-GSIFSYE 347 LR+LDRLL EETG+PV+VAEDPLTCV RG G ALE +D G +FS E Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE 347
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.8 bits (69), Expect = 0.013 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 395 SNKIAKEIFVTIWDEKAADEGAADRIIEAKGLK-QISDTGALEAIIDEVLAANAKSVEEF 453 +N EIF I E D A KG+K ++SD LE + ++ L KS +EF Sbjct: 648 ANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDK--LENV-NKNLKDFDKSFDEF 704 Query: 454 RAGKDKAFNALVGQAMKATKGKANPQQVN 482 + GK+K F+ + +KA KG +N Sbjct: 705 KNGKNKDFSK-AEETLKALKGSVKDLGIN 732
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.9 bits (142), Expect = 9e-13 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 15/183 (8%) Query: 24 ANRTRPKPGERRVHILQTLASMLEAPKSEKITTAALAARLDVSEAALYRHFSSKAQMFEG 83 A +T+ + E R HIL + + +A V+ A+Y HF K+ +F Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 84 LIEFIEETFFGLVNQIAANEPNGVLQA-RSIALMLLNFSAKNPGMTRVLTGEALVGEHER 142 + E E L + A P L R I + +L + ++ + H+ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLME----IIFHKC 117 Query: 143 LAERVNQMLERVEASIKQCLR---VALLEAQAHAAGGAPPPVPLPDDYDPALRASLVISY 199 ++++ + ++ L+ A P + A ++ Y Sbjct: 118 EFVGEMAVVQQAQRNLCLESYDRIEQTLKH-CIEAKMLPADL------MTRRAAIIMRGY 170 Query: 200 VLG 202 + G Sbjct: 171 ISG 173
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 43.7 bits (103), Expect = 5e-07 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Query: 180 IPVISPIGFGEDGLSYNINADLVAGKLATVLNAEKLVMMTNIPGVMDKEG----NLLTDL 235 +PVI G G+ I+ DL KLA +NA+ +++T++ G G L ++ Sbjct: 197 VPVILEDG-EIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREV 255 Query: 236 SAREIDALFEDGT-ISGGMLPKISSALDAAKSGVKSVHI 273 E+ +E+G +G M PK+ +A+ + G + I Sbjct: 256 KVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII 294 Score = 36.7 bits (85), Expect = 8e-05 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Query: 31 GKTVVIKYGGNAMTEERLKQGF----------ARDVILLKLVGINPVIVHGGGPQIDQAL 80 GK VVI GGNA+ + K + AR + + G VI HG GPQ+ L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 9e-23 Identities = 30/127 (23%), Positives = 60/127 (47%) Query: 4 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGND 63 M+ LV DD+ L + L R GY VR N + A + + D+ + ++ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 64 SGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 123 + L+ + +PD +LV++ + TA++A + GA +YL KP ++ ++ + + Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 124 EVQAEEA 130 E + + Sbjct: 121 EPKRRPS 127 Score = 45.2 bits (107), Expect = 4e-08 Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 3/101 (2%) Query: 78 DARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVL 137 I+ + I + L+ VE + + + L Sbjct: 375 TREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGL---YDR 431 Query: 138 SVDRLEWEHIQRVLAENNNNISATARALNMHRRTLQRKLAK 178 + +E+ I L N A L ++R TL++K+ + Sbjct: 432 VLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.014 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%) Query: 17 IIGQAKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVGKTEIAR---RLAKL 73 ++G++ A + + ++ + T +++ G +G GK +AR K Sbjct: 139 LVGRSAAMQEI------YRVLARLMQ------TDLTLMITGESGTGKELVARALHDYGKR 186 Query: 74 ADAPFIKI 81 + PF+ I Sbjct: 187 RNGPFVAI 194
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 62.5 bits (152), Expect = 4e-15 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 10 AVLAYDAKGGDTAPRVVAKGYGLVAERIIERARDAGLYVHTAPEMV-SLLMQVDLDARIP 68 A+ +G P V K + + + A + G+ + + +L +D IP Sbjct: 268 AIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIP 327 Query: 69 PQLYQAVAELLAWLYALERDA 89 + +A AE+L WL + Sbjct: 328 AEQIEATAEVLRWLERQNIEK 348
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 34.2 bits (78), Expect = 0.001 Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 356 ISAPGSTNHGTLQGSALENSNVDLTSQLVKLITAQRNYQANAQTIKTQQTVDQTLINL 413 SA L S V+L + L Q+ Y ANAQ ++T + LIN+ Sbjct: 488 SSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 30.3 bits (68), Expect = 0.017 Identities = 11/31 (35%), Positives = 17/31 (54%) Query: 6 GLSGLAGASSDLDVIGNNIANANTVGFKGST 36 +SGL A + L+ NNI++ N G+ T Sbjct: 7 AMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.019 Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 4 LIYTAMTGATQSLEQQSVVANNLANASTTGFRAQ 37 LI AM+G + + +NN+++ + G+ Q Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQ 36
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 1e-06 Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 213 TLKQGYVESSNVNVVQELVNMIQTQRAYEINSKAVTTSDQMLQTVTQM 260 L S VN+ +E N+ + Q+ Y N++ + T++ + + + Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 40.3 bits (94), Expect = 5e-06 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%) Query: 4 SLYIAATGMNAQQAQMDVISNNLANVSTNGFKGSRAVFEDLLYQTVRQPGANSTQQTELP 63 + A +G+NA QA ++ SNN+++ + G+ RQ + + L Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYT--------------RQTTIMAQANSTLG 48 Query: 64 SGLQLGTGVQQVATERLYTQ 83 +G +G GV +R Y Sbjct: 49 AGGWVGNGVYVSGVQREYDA 68
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 205 bits (522), Expect = 1e-68 Identities = 128/222 (57%), Positives = 156/222 (70%), Gaps = 7/222 (3%) Query: 25 AALAAAALALAGCAQIPREPITQQPMSAMPPMPPAMQAPGSIY---NPGYAG-RPLFEDQ 80 A + L+L GCA IP P+ Q SA P P A GSI+ P G +PLFED+ Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPTPVANGSIFQSAQPINYGYQPLFEDR 69 Query: 81 RPRNVGDILTIVIAENINATKSSGANTNRQGNTSFDVPTAG-FLGGLF--NKANLSAQGA 137 RPRN+GD LTIV+ EN++A+KSS AN +R G T+F T +L GLF +A++ A G Sbjct: 70 RPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGG 129 Query: 138 NKFAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFVRFSGIVNPNTI 197 N F GGA+A+NTF+GT+TVTV VL NGNL V GEKQ+ INQG EF+RFSG+VNP TI Sbjct: 130 NTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 189 Query: 198 SGQNSVYSTQVADARIEYSAKGYINEAETMGWLQRFFLNIAP 239 SG N+V STQVADARIEY GYINEA+ MGWLQRFFLN++P Sbjct: 190 SGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSP 231
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 371 bits (953), Expect = e-129 Identities = 164/392 (41%), Positives = 225/392 (57%), Gaps = 27/392 (6%) Query: 4 RVVRPLVAARRRAAACCALAACMLALAFAPAAARAERLKDLAQIQGVRDNPLIGYGLVVG 63 RV+R + AA +A L+ PA A R+KD+A +Q RDN LIGYGLVVG Sbjct: 2 RVLRIIAAALVFSALPF--------LSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVG 53 Query: 64 LDGTGDQTMQTPFTTQTLANMLANLGISINNGSANGGGSSAMTNMQLKNVAAVMVTATLP 123 L GTGD +PFT Q++ ML NLGI+ G +N KN+AAVMVTA LP Sbjct: 54 LQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQSN-----------AKNIAAVMVTANLP 102 Query: 124 PFARPGEAIDVTVSSLGNAKSLRGGTLLLTPLKGADGQVYALAQGNMAVGGAGASANGSR 183 PFA PG +DVTVSSLG+A SLRGG L++T L GADGQ+YA+AQG + V G A + + Sbjct: 103 PFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAAT 162 Query: 184 VQVNQLAAGRIAGGAIVERSVPNAVAQMNGVLQLQLNDMDYGTAQRIVSAVNS----SFG 239 + + R+ GAI+ER +P+ L LQL + D+ TA R+ VN+ +G Sbjct: 163 LTQGVTTSARVPNGAIIERELPSKFKDSV-NLVLQLRNPDFSTAVRVADVVNAFARARYG 221 Query: 240 AGTATALDGRTIQLTAPADSAQQVAFMARLQNLEVSPERAAAKVILNARTGSIVMNQMVT 299 A D + I + P + MA ++NL V + AKV++N RTG+IV+ V Sbjct: 222 DPIAEPRDSQEIAVQKPRVA-DLTRLMAEIENLTVETD-TPAKVVINERTGTIVIGADVR 279 Query: 300 LQNCAVAHGNLSVVVNTQPVVSQPGPFSNGQTVVAQQSQIQLKQDNGSLRMVTAGANLAD 359 + AV++G L+V V P V QP PFS GQT V Q+ I Q+ + + G +L Sbjct: 280 ISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSKV-AIVEGPDLRT 338 Query: 360 VVKALNSLGATPADLMSILQAMKAAGALRADL 391 +V LNS+G +++ILQ +K+AGAL+A+L Sbjct: 339 LVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 227 bits (579), Expect = 3e-75 Identities = 124/297 (41%), Positives = 173/297 (58%), Gaps = 15/297 (5%) Query: 15 ALDVQGFDALRSKATAAAPREGVKMVAGQFDAMFTQMMLKSMRDATPSDGLLDSSSSKMY 74 A D Q + L++KA P ++ VA Q + MF QMMLKSMRDA P DGL S +++Y Sbjct: 12 AWDAQSLNELKAKA-GEDPAANIRPVARQVEGMFVQMMLKSMRDALPKDGLFSSEHTRLY 70 Query: 75 TSMLDQQLAQQMSS-KGIGVADALTKQLLRNANVAPDAQGEGGLAAMNALAKAYANSNGA 133 TSM DQQ+AQQM++ KG+G+A+ + KQ+ + ++ + Y N + Sbjct: 71 TSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEESTPAAPMKFPLETVVRYQNQALS 130 Query: 134 PGNGALAGTRGYSAASALTPPLKGNGNSAQADAFVEKMALAAQAASATTGIPARFIVGQA 193 P + + AF+ +++L AQ AS +G+P I+ QA Sbjct: 131 ------------QLVQKAVPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQA 178 Query: 194 ALESGWGKREIRGANGESSYNVFGIKATKGWTGRTVSAVTTEYVNGKPHRVVAQFRAYDS 253 ALESGWG+R+IR NGE SYN+FG+KA+ W G TTEY NG+ +V A+FR Y S Sbjct: 179 ALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSS 238 Query: 254 YEHAMTDYANLLKNNPRYASVLNAGHNAEGFAHGMQKAGYATDPHYAKKLISIMQQI 310 Y A++DY LL NPRYA+V A +AE A +Q AGYATDPHYA+KL +++QQ+ Sbjct: 239 YLEALSDYVGLLTRNPRYAAVTTAA-SAEQGAQALQDAGYATDPHYARKLTNMIQQM 294
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 231 bits (591), Expect = 4e-70 Identities = 162/444 (36%), Positives = 253/444 (56%), Gaps = 12/444 (2%) Query: 3 NTLMNLGVSGLNAALWGLTTTGQNISNAATPGYSVERPVYAEASGQYTSSGYLPQGVSTV 62 ++L+N +SGLNAA L T NIS+ GY+ + + A+A+ + G++ GV Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 63 TVERQYNQYLSNQLNAAQTQGSSLSTYYTLVAQLNNYVGSPTAGIATAITNYFTGLQTVA 122 V+R+Y+ +++NQL AAQTQ S L+ Y +++++N + + T+ +AT + ++FT LQT+ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLV 120 Query: 123 NNAADPSARQTAMSNAQTLASQLVAAGQQYSQLRQSVNSQLTDTVTQINSYTSQIAQLNE 182 +NA DP+ARQ + ++ L +Q Q + VN + +V QIN+Y QIA LN+ Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 183 QIA--SASSQGQPPNQLLDQRDLAVSKLSQLAGVQV-VQSNGNYSVFLSGGQPLVVGNAS 239 QI+ + G PN LLDQRD VS+L+Q+ GV+V VQ G Y++ ++ G LV G+ + Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTA 240 Query: 240 YQLATVASPSDPSELTI-VSKGVAGSAQPGPTQYLPDVSLTGGALGGLLAFRSQTLDPAQ 298 QLA V S +DPS T+ G AG+ + +P+ L G+LGG+L FRSQ LD + Sbjct: 241 RQLAAVPSSADPSRTTVAYVDGTAGNIE------IPEKLLNTGSLGGILTFRSQDLDQTR 294 Query: 299 AQLGALAVSFASQVNAQNALGVDMSGNPGGSLFAVGAPAVYANQNNTGSATLSVSFVDGT 358 LG LA++FA N Q+ G D +G+ G FA+G PAV N N G + + D + Sbjct: 295 NTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDAS 354 Query: 359 QPTTSDYALSYDGAKYTLTDRATGSVVGTATPSSTPPTMTIGGLKLSLSSTPNAGDSFTV 418 +DY +S+D ++ +T R + T TP + + GL+L+ + TP DSFT+ Sbjct: 355 AVLATDYKISFDNNQWQVT-RLASNTTFTVTPDAN-GKVAFDGLELTFTGTPAVNDSFTL 412 Query: 419 LPTRGALDGFSLATANGSAIAAAS 442 P A+ + + + IA AS Sbjct: 413 KPVSDAIVNMDVLITDEAKIAMAS 436 Score = 83.1 bits (205), Expect = 9e-19 Identities = 46/105 (43%), Positives = 66/105 (62%) Query: 561 GTNDGRNALALSQLVNSKTMNNGTTTLTGAYAGYVNAIGNAASQLKASSAAQTALVGQIT 620 G +D RN AL L ++ G + AYA V+ IGN + LK SSA Q +V Q++ Sbjct: 441 GDSDNRNGQALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLS 500 Query: 621 QAQQSVSGVNQNEEAANLMQYQQLYQANAKVIQTANSVFQTVLGL 665 QQS+SGVN +EE NL ++QQ Y ANA+V+QTAN++F ++ + Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLAGELLIN#Flagellin signature. Length = 507 Score = 41.2 bits (96), Expect = 6e-06 Identities = 55/369 (14%), Positives = 113/369 (30%), Gaps = 10/369 (2%) Query: 16 MNDQQAQIAQLYQQVSSGISLTTPADNPLAAAQAVQLSATSATLAQYTQNQTIVQTALQT 75 +N Q+ ++ +++SSG+ + + D+ A A + ++ L Q ++N + QT Sbjct: 17 LNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQT 76 Query: 76 EDTTLTSVNDVLNAAYQALMHAGDGGLSDSDRAALAAQIQGSRDHLLTLANTADGAGNYL 135 + L +N+ L + + A +G SDSD ++ +IQ + + ++N G + Sbjct: 77 TEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKV 136 Query: 136 FAGFQPTTQPFSNKPGGGVTY------AGDYGARAVQIADTRTVSQGDNGANVFMSVPFL 189 + G +T G + + + GD ++ + Sbjct: 137 LSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYD 196 Query: 190 GSLPVPAAGASNTGTGTIGAVSITNPSDPTNTHQFTITFGGTAAAPTYTVTDNSVTPPTT 249 + +G + + T A T D T +T Sbjct: 197 TYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKST 256 Query: 250 TAAQAYSSGQGINLGGQTVAVSGKPAVGDTFTVTPAPQAGTDVFATLD----TVIAALKS 305 + G GG+ V T V T++ T+ A + Sbjct: 257 AGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADIT 316 Query: 306 PVGNSQTASTALTNTMATASTKLMNTMTNVLTVQASVGGRLQEVKAMQAVTTTNTLQTTN 365 + A+T ++ S + T S E + T+ Sbjct: 317 AGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAE 376 Query: 366 SLSNLTDTN 374 +N Sbjct: 377 YTANAAGDK 385
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.3 bits (63), Expect = 0.021 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 110 YVQQGMMPVTAGLVVASAVLISEASNRSALQWGITAAVAAL-AYRTRVHPLWLLAGGALA 168 Y G++ T GL +A+LI E + + G A L A R R+ P+ + + + Sbjct: 925 YFMVGLL-TTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 169 GLV 171 G++ Sbjct: 984 GVL 986
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 445 bits (1145), Expect = e-156 Identities = 152/483 (31%), Positives = 231/483 (47%), Gaps = 47/483 (9%) Query: 4 RLQVIYIEDDELVRRASVQSLQLAGFDVVGFGSVEAAEKAIVGDATGVIVSDIRLPGASG 63 ++ +DD +R Q+L AG+DV + + I ++V+D+ +P + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 LELLAQCRERTPDVPVVLVTGHGDISMAVQAMRDGAYDFIEKPFAAERLTETVRRALERR 123 +LL + ++ PD+PV++++ A++A GAYD++ KPF L + RAL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 ALVLENHALRRELAGQGVVAPRIIGRSPAIEQVRRLIANVAPTDASVLINGDTGAGKELI 183 +L ++GRS A++++ R++A + TD +++I G++G GKEL+ Sbjct: 123 K------RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELV 176 Query: 184 ARSLHELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEYASGGTLF 243 AR+LH+ RR+ PF+A+N A+P + ESE+FG+E GAFTGA R G+ E A GGTLF Sbjct: 177 ARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLF 236 Query: 244 LDEIESMPLALQVKLLRVLQDGVLERLGSNQPIRVNCRVVAAAKGDMSEHVAAGTFRRDL 303 LDEI MP+ Q +LLRVLQ G +G PIR + R+VAA D+ + + G FR DL Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDL 296 Query: 304 LYRLNVVTIALPPLAERREDIVPLFEHFMLDAAVRYGRPAPLLTDRQRASLMQRDWPGNV 363 YRLNVV + LPPL +R EDI L HF + A + G + WPGNV Sbjct: 297 YYRLNVVPLRLPPLRDRAEDIPDLVRHF-VQQAEKEGLDVKRFDQEALELMKAHPWPGNV 355 Query: 364 RELRNAADRFVLGVTEGIVG---------------------------------------- 383 REL N R + ++ Sbjct: 356 RELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQY 415 Query: 384 DAGPETDEHAEQSLKERVEQFERAVIAETLNRTGGAVATTADKLHVGKATLYEKMKRYGL 443 A + + E +I L T G AD L + + TL +K++ G+ Sbjct: 416 FASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475 Query: 444 SAK 446 S Sbjct: 476 SVY 478
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 27.8 bits (61), Expect = 0.025 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 97 EFVAVAMNYDPPMYVANYAQTRQ------LPFKVALDDGSVAK-QFGNVQLTPTTFVIGK 149 ++V A+ +P NY Q + +P ++ DDG+ F N+ L P FV+ Sbjct: 386 QYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEI-FDDGTFTYFGFKNITLQPAIFVVQP 444 Query: 150 DGKI 153 DGK+ Sbjct: 445 DGKL 448
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.8 bits (72), Expect = 6e-04 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Query: 47 GEALLVAQARDE--GIVGFVSVWEPERFVHHLYVAGTRLREGIGAALLRALPGW----PA 100 G+A + + G + S W + + VA ++G+G ALL W Sbjct: 64 GKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 101 ARYRLKCLVRNERALAFYRAHGF 123 L+ N A FY H F Sbjct: 124 CGLMLETQDINISACHFYAKHHF 146
>SYCECHAPRONE#Gram-negative bacterial type III secretion SycE chaperone signature. Length = 130 Score = 28.9 bits (64), Expect = 0.024 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 8/84 (9%) Query: 158 ELYLPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADL 217 +L L +P E + GV V C H+ + P G++ P LD T Sbjct: 14 QLSLSIPDTIEPVI--GVKVG-----EFAC-HITEHPVGQILMFTLPSLDNNDEKETLLS 65 Query: 218 ADVIGQAGAKRALEVAAAGGHHML 241 ++ Q K L GGH +L Sbjct: 66 HNIFSQDILKPILSWDEVGGHPVL 89
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 31.3 bits (70), Expect = 0.010 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 17 AMADDASSAPAAASAATASDTSAGAAASAPAASAAPAAPAAPAASAPAAASAAAPASAAA 76 A A + + AAA A ++ A A+ AA+ A PA + A AA + A Sbjct: 216 AAAANKAREQAAAEAKRKAEEQARQQAAIRAANTY-AMPANGSVVATAAGRGLIQVAQGA 274 Query: 77 APAAPTAPFSVD 88 A A ++ Sbjct: 275 ASLAQAISDAIA 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.3 bits (237), Expect = 6e-25 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 2 RILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGID 61 IL+ +DD I + +AL G V + + DL++ D+ +P + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDE-LAARMRALIRRQS 120 +L ++ LPVL+++A++ +K + GA DYL KPFDL E + RAL + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GRSE 124 S+ Sbjct: 125 RPSK 128
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 77.7 bits (191), Expect = 8e-18 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 40/207 (19%) Query: 58 QRRAAPQLPIDPDDP-----FYQFFRHFYGQIPGMGGGRQPQPDDQPSTSLGSGFIISAD 112 ++R + + +D I Q + T + SG ++ Sbjct: 62 EQREHANVILPNNDRHQITDTTNGHYAPVTYI---------QVEAPTGTFIASGVVV-GK 111 Query: 113 GYILTNAHVIDGANVVTVKLTDKR-----------EYKA-KVVGADKQSDVAVLKIDA-- 158 +LTN HV+D + L + A ++ + D+A++K Sbjct: 112 DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNE 171 Query: 159 ------SGLPIVKIGDPAQSKVGQWVVAIGSPYGFDNTVTSGIISAKSRALPDENYTPFI 212 + + + A+++V Q + G P +K + + + Sbjct: 172 QNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKITYLKGE--AM 226 Query: 213 QTDVPVNPGNSGGPLFNLNGEVIGINS 239 Q D+ GNSG P+FN EVIGI+ Sbjct: 227 QYDLSTTGGNSGSPVFNEKNEVIGIHW 253
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 126 bits (317), Expect = 2e-38 Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 1/209 (0%) Query: 1 MARRTKEEALATRDRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFASKSELFD 60 MAR+TK+EA TR ILD A +F ++GVS TSL +IA+ AGVTRGAIYWHF KS+LF Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AMFDRVLLPIDELKAGT-GEPHADPLGRIREILIWCLLGAARDPQLRRVFSILFMKCEYV 119 +++ I EL+ + DPL +REILI L + + R + I+F KCE+V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 120 ADMGPLLQRNREGMRDALRNIEADLAQGVANGQLPADLDTWRATLMLHTLVSGFVRDMLM 179 +M + Q R ++ IE L + LPADL T RA +++ +SG + + L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 180 LPGEIDAERHAEKLVDGCFDMLRTSPAMR 208 P D ++ A V +M P +R Sbjct: 181 APQSFDLKKEARDYVAILLEMYLLCPTLR 209
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 4e-06 Identities = 42/266 (15%), Positives = 80/266 (30%), Gaps = 75/266 (28%) Query: 92 KIDPAPYIAQLNSAKATLAKAQANLATQNALVARYKVLVAANAVSKQQYDDAVAAQGQAA 151 +++ A+ + A + + + + + + + L+ A++K + +A Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 152 ADVGAGKAAV-------------------------------------------ETAQINL 168 ++ K+ + + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 169 GYTDVVSPITGRV-GISQVTPGAYVQASQATLMSTVQQLDPVYVDLTQSSLDGLKLRQDI 227 + + +P++ +V + T G V ++ TLM V + D + V + D + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAE-TLMVIVPEDDTLEVTALVQNKDIGFINVG- 383 Query: 228 QSGRIK-------TEGPGAAKVTLILEDGKPYPERGKLQFSDVTVDQTTGSVT--IRAI- 277 Q+ IK G KV I D DQ G V I +I Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNI--------------NLDAIEDQRLGLVFNVIISIE 429 Query: 278 -----FPNKQRVLLPGMFVRARIEEG 298 NK L GM V A I+ G Sbjct: 430 ENCLSTGNKNIPLSSGMAVTAEIKTG 455 Score = 30.6 bits (69), Expect = 0.012 Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 20/122 (16%) Query: 1 MRVERVPYRLITVATAAVFLAACGKKESAPPPQTPEVGVVTVQPQPVPVVSELPGRTSAY 60 R V Y ++ A L+ G+ E G +T + + Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATAN----GKLTHSGRSKEIKPIENSIVKEI 110 Query: 61 LVAQVRARVDGIVLRREFTEGSDVKAGQRLYKIDPAPYIAQLNSAKATLAKAQANLATQN 120 +V EG V+ G L K+ A +++L +A+ Sbjct: 111 IVK----------------EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 121 AL 122 L Sbjct: 155 IL 156
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1272 bits (3292), Expect = 0.0 Identities = 674/1035 (65%), Positives = 822/1035 (79%), Gaps = 2/1035 (0%) Query: 1 MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPIAQYPTIAPPSIQITANYPGASAKTVEDT 60 MA FFI RPIFAWV+AIILM+AG AI LP+AQYPTIAPP++ ++ANYPGA A+TV+DT Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQNKLSLATPILPQ 120 VTQVIEQ M+G+DN +YMSSTSD +G+ TIT+TF GT+PDIAQVQVQNKL LATP+LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 VVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRINGVGTVTLFGS 180 VQQ G+SV KSSSS+L+V F S++ + D+++YVAS+VKD +SR+NGVG V LFG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QYAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGTVLQATITEATLL 240 QYAMRIWLD L Y LTPVDV + + QN QIA GQLGGTPA+PG L A+I T Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANAL 300 + PE+FG + L+VN DGS VRLKDVA++ LGGE YN + NG+P A LGI+LAT ANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 ATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQ 360 TAKA++AK+ E+ +FP G+ V YPYDTTPFV+LSI EVVKTL E I+LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENVERVM 420 N+RAT+IPTIAVPVVLLGTFAI++ G+SIN L+MFG+VLAIGLLVDDAIVVVENVERVM Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLPPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVL 480 E+ LPPKEAT K+M QI GALVG+A+VLSAVF+P+AF GGS GAIYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNSSRDKYHVGVHHVIKRSGRW 540 SVLVALILTPALCAT+LKP+ HHE K GFFGWFN TF+ S + Y V ++ +GR+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 541 LIIYLAVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTARTLANISDYLLTQ 600 L+IY ++ + +LF+RLP SFLP+EDQG+ ++Q P+G+TQE T + L ++DY L Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 EKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGRMFGRYAGYKDA 660 EK VES FTVNGFSF+G+ QN+G+ FV LK + +R + +A+I R +D Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 661 LVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKDP-TLRGVRPNGL 719 VIPFN P+I ELGTA GFDFEL D AGLGHDAL ARNQLLGMAA+ P +L VRPNGL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 720 NDTPQYKVDIDREKANALGVTADAIDQTFSIAWASKYVNNFLDTDGRIKKVYVQSDAPFR 779 DT Q+K+++D+EKA ALGV+ I+QT S A YVN+F+D GR+KK+YVQ+DA FR Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFR 779 Query: 780 MTPEDMNIWYVRNGSGGMVPFSAFATGHWTYGSPKLERYNGISAMEIQGQAAPGKSTGQA 839 M PED++ YVR+ +G MVPFSAF T HW YGSP+LERYNG+ +MEIQG+AAPG S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 840 MTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPILYAISILVVFLCLAALYESWSIPFS 899 M ME LA KLP GIGY WTG+S+QE SG+QAP L AIS +VVFLCLAALYESWSIP S Sbjct: 840 MALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVS 899 Query: 900 VIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQQTENMGP 959 V++VVPLG++G LLAATL +NDV+F VGLLTT+GLSAKNAILIVEFA++L + E G Sbjct: 900 VMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGV 959 Query: 960 IEAALEAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMITATFLAIF 1019 +EA L A R+RLRPILMTSLAFILGV+PLAISNGAGS +Q+A+G GV+GGM++AT LAIF Sbjct: 960 VEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIF 1019 Query: 1020 MIPMFFVKVRAVFSG 1034 +P+FFV +R F G Sbjct: 1020 FVPVFFVVIRRCFKG 1034
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 32.8 bits (74), Expect = 0.002 Identities = 69/316 (21%), Positives = 116/316 (36%), Gaps = 55/316 (17%) Query: 125 DSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPEQP-TYEQIAEFADKLTDRANGTY 183 D++ YNG+L A P VE+ Y KDL +P P T+E+I +L +A G Sbjct: 121 DAVRYNGKLIAYPIAVEALSLIYNKDL-------LPNPPKTWEEIPALDKEL--KAKGKS 171 Query: 184 GICLRGKAGWGENMAYVSTVVNTFGGRWFD-ENW-----NAQLTSPEWKKAINFYVNLLK 237 + + + + ++ GG F EN + + + K + F V+L+K Sbjct: 172 ALMFNLQEPY-----FTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIK 226 Query: 238 KNGPPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNKQQSQVAEKIGFAAAPVAATP 297 + E G+ AM I+ A N S+V G P Sbjct: 227 NKHMNADTDYSIAE--AAFNKGETAMTINGPWAWS---NIDTSKV--NYGVTVLPTFKGQ 279 Query: 298 KGSHWLWAWALAIPKTSKQQDAAKKFV-TWATSKQYVEMVGKDEGWASVPPGTRQSTYQR 356 ++ + I S ++ AK+F+ + + + +E V KD+ Sbjct: 280 PSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK---------------- 323 Query: 357 AEYKAAAPFSEFVLKAIQTADPTDPSLKKV---PYTGVQYVGIPEFQSFGTVVGQAIAGA 413 P LK+ + DP + G IP+ +F V A+ A Sbjct: 324 -------PLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINA 376 Query: 414 VAGQTSVDQALAAGQA 429 +G+ +VD+AL Q Sbjct: 377 ASGRQTVDEALKDAQT 392
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 333 bits (855), Expect = e-112 Identities = 124/357 (34%), Positives = 178/357 (49%), Gaps = 42/357 (11%) Query: 145 ERLTTVRSASAKPSGEGLVGGSDAFNAALSALQRVAPSMLPVLLLGESGTGKELFARALH 204 + + G LVG S A L R+ + L +++ GESGTGKEL ARALH Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALH 181 Query: 205 EASARAMGPFVVVDCSGIAETLFESELFGYEKGAFTGASARKPGLVETAQGGTLFLDEIG 264 + R GPFV ++ + I L ESELFG+EKGAFTGA R G E A+GGTLFLDEIG Sbjct: 182 DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 265 DVPLSMQVKLLRLIESGTFRRVGGVEALCADFRLVAATHKPLKAMIGDGRFRPDLYYRIS 324 D+P+ Q +LLR+++ G + VGG + +D R+VAAT+K LK I G FR DLYYR++ Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLN 301 Query: 325 AYPISLPAVRERPGDMPLLVDSILRRIAALGPVAGQHFVVAPDALARLEAYAWPGNIREL 384 P+ LP +R+R D+P LV +++ G +AL ++A+ WPGN+REL Sbjct: 302 VVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG---LDVKRFDQEALELMKAHPWPGNVREL 358 Query: 385 RNVLDRACLLTDDGVIRVEHLPDEVAGGARIEPGAPAKLSDDELARIARAFDGTRRAL-- 442 N++ R L VI E + +E+ P A L+ + R+ Sbjct: 359 ENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFAS 418 Query: 443 -------------------------------------AERVGMSERTLYRRLRALGI 462 A+ +G++ TL +++R LG+ Sbjct: 419 FGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 0.006 Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 293 QRWLELFRHYAGDDPATQLKFREALANEPELMTGTWADDALLGFVREAMQHLAPARR 349 Q ++ + + P TQ + R +A +T DD +L + ++M H AR Sbjct: 95 QNGIKRVKEFLESSPNTQWELRAFMAVMHFSLTADRIDDDILKVIVDSMNHHGDARS 151
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 433 bits (1115), Expect = e-137 Identities = 223/1062 (20%), Positives = 423/1062 (39%), Gaps = 75/1062 (7%) Query: 13 LSAWALRHQALVVYLIALATIAGILAYSRLAQSEDPPFTFRVMVIRTFWPGATARQVQEQ 72 ++ + +R L + +AG LA +L ++ P + + +PGA A+ VQ+ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 73 VTDRIGRKLQEMPAIDYLRSYS-RPGESMLFFAMKDSAPVKDVPQTWYQVRKKVGDISMT 131 VT I + + + + Y+ S S G + + QV+ K+ + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQV---QVQNKLQLATPL 117 Query: 132 LPPGVQGP-FFNDEFGDVYTNIYTLEGDG--FSPAQLHDYAD-QLRVVLLRVPGVAKVDY 187 LP VQ ++ Y + D + + DY ++ L R+ GV V Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 188 FGDPDQRIFVEIDNTRLARLGISPQQIAQAINAQNDVASPGVLTAAHD------RVFIRP 241 FG + + +D L + ++P + + QND + G L I Sbjct: 178 FG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 242 SGQYESVAAIADTLIRVN--GRTFRLGELATIKRGYDDPPVTQMRTIGRNANGRAVLGIG 299 ++++ +RVN G RL ++A ++ G + + NG+ G+G Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELG------GENYNVIARINGKPAAGLG 290 Query: 300 VTMQPGGDVIRLGKALDASAKALQAQLPAGLALTEVSSMPHAVARSVDDFLEAVAEAVAI 359 + + G + + KA+ A LQ P G+ + V S+ + ++ + EA+ + Sbjct: 291 IKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIML 350 Query: 360 VLIVSLVSLG-LRTGMVVVISIPVVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAI 418 V +V + L +R ++ I++PVVL T + F ++ +++ +VLA+GLLVDDAI Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAI 410 Query: 419 IAVEMMA-VKLEQGFSRARAAAFAYTSTAFPMLTGTLVTVSGFLPIALAKSSTGEYTRSI 477 + VE + V +E A + + ++ +V + F+P+A STG R Sbjct: 411 VVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQF 470 Query: 478 FEVSAIALIASWFAAVVLIPLLGYHMLPERKHPRQDAAGAPHAP-DAAHDHAHGHDIYDT 536 A+ S A++L P L +L + G + DH+ Sbjct: 471 SITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS-------V 523 Query: 537 RFYTRLRVWIKWCIERRFIVLAITIALFVVALAGFSLVPQQFFPSSDRPELLVDLRLPEG 596 YT + + L I + + F +P F P D+ L ++LP G Sbjct: 524 NHYTNS---VGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAG 580 Query: 597 ASFSATLKEAERLEKLIAK--RPEIDHAVNFVGSGAPRFYLPLDQQLQLPNFAQFVITAK 654 A+ T K +++ K + ++ G Q N ++ K Sbjct: 581 ATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSG---------QAQNAGMAFVSLK 631 Query: 655 SVDAR---EKLSAWLAPVLREQFPAARTRISRLENGPPV-------GYPVQ-FRVSGDSI 703 + R E + + + + R N P + G+ + +G Sbjct: 632 PWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGH 691 Query: 704 ATVRAIAEKVAATMR---ADARATNVQFDWDEPAERSVRFELDQHKARELNVSSQDVASF 760 + ++ A + D + E+DQ KA+ L VS D+ Sbjct: 692 DALTQARNQLLGMAAQHPASLVSVRPNGLEDTA---QFKLEVDQEKAQALGVSLSDINQT 748 Query: 761 LAMTLSGTTLTQYRERDKLIAVDLRAPRAQRIDPASLAGLAMPTPNG-PVPLGSLGRFHD 819 ++ L GT + + +R ++ + ++A R+ P + L + + NG VP + H Sbjct: 749 ISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW 808 Query: 820 TLEYGVVWERDRQPTITVQSDVTAGAQGIDVTHAIDAKLDALRAQLPVGYRIEIGGSVEE 879 + + P++ +Q + G + A ++ L ++LP G + G + Sbjct: 809 VYGSPRLERYNGLPSMEIQGEAAPG----TSSGDAMALMENLASKLPAGIGYDWTGMSYQ 864 Query: 880 STKGQTSINAQMPLMVIAVLTLLMIQLQSFSRVLMVVLTAPLGMIGVVGTLLLFGKPFGF 939 A + + + V L +S+S + V+L PLG++GV+ LF + Sbjct: 865 ERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV 924 Query: 940 VAMLGVIAMFGIIMRNSVILVDQIEQDIAA-GHGRFDAIVGATVRRFRPITLTAAAAVLA 998 M+G++ G+ +N++++V+ + + G G +A + A R RPI +T+ A +L Sbjct: 925 YFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILG 984 Query: 999 LIPLLRSNFFG-----PMATALMGGITSATVLTLFFLPALYA 1035 ++PL SN G + +MGG+ SAT+L +FF+P + Sbjct: 985 VLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 84.1 bits (208), Expect = 2e-18 Identities = 92/533 (17%), Positives = 185/533 (34%), Gaps = 63/533 (11%) Query: 550 IERRFIVLAITIALFVVALAGFSLVPQQFFPSSDRPELLVDLRLPEGASFSATLKEAERL 609 I R + I L + +P +P+ P + V P GA A+ + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GAD-------AQTV 57 Query: 610 EKLIAKRPE-----IDHAVNFVGSGAPRFYLPLDQQLQL---PNFAQFVITAKSVDAREK 661 + + + E ID+ + + + + Q P+ AQ V + K Sbjct: 58 QDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQ-------VQVQNK 110 Query: 662 LSAWLAPVLREQFP-AARTRISRLENGPPVGYPVQFRVSGDSIATVRAIAEKVAATMRAD 720 L P + + +E V VS + T I++ VA+ ++ Sbjct: 111 LQL-----ATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDT 165 Query: 721 AR----ATNVQFDWDEPAERSVRFELDQHKARELNVSSQDVASFL--------AMTLSGT 768 +VQ A+ ++R LD + ++ DV + L A L GT Sbjct: 166 LSRLNGVGDVQLF---GAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGT 222 Query: 769 TLTQYRERDKLIAVDLRAPRAQRIDPASLAGLAMPTPNG-PVPLGSLGRFHDTLE-YGVV 826 ++ + I R + +L +G V L + R E Y V+ Sbjct: 223 PALPGQQLNASIIAQTRFKNPEEFGKVTLRV----NSDGSVVRLKDVARVELGGENYNVI 278 Query: 827 WERDRQPTITVQSDVTAGAQGIDVTHAIDAKLDALRAQLPVGYRIEI----GGSVEESTK 882 + +P + + GA +D AI AKL L+ P G ++ V+ S Sbjct: 279 ARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSI- 337 Query: 883 GQTSINAQMPLMVIAVLTLLMIQLQSFSRVLMVVLTAPLGMIGVVGTLLLFGKPFGFVAM 942 + +++ L + + LQ+ L+ + P+ ++G L FG + M Sbjct: 338 -HEVVKTLFEAIMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTM 395 Query: 943 LGVIAMFGIIMRNSVILVDQIEQDIAAGHGRF-DAIVGATVRRFRPITLTAAAAVLALIP 1001 G++ G+++ +++++V+ +E+ + +A + + + A IP Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIP 455 Query: 1002 LL-----RSNFFGPMATALMGGITSATVLTLFFLPALYAAWFRVKPDERDPEP 1049 + + + ++ + + ++ L PAL A + E Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK 508
>PF06917#Periplasmic pectate lyase Length = 555 Score = 26.0 bits (57), Expect = 0.041 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Query: 52 NWSALAEIRRRLHGMYWKRRRIGVWLFSFWDRSDAAE 88 +W L R HG Y K+R V+ +D + AE Sbjct: 173 DWKTLDLGR---HGNYSKQRDPQVFTHPRYDVVNPAE 206
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 515 bits (1327), Expect = 0.0 Identities = 130/423 (30%), Positives = 227/423 (53%), Gaps = 21/423 (4%) Query: 1 MSQAIPQVGVHSEVGKLRKVLVCSPGLAHQRLTPSNCDELLFDDVMWVNQAKRDHFDFVS 60 M + + + + SE+G+L+KVL+ PG + LTP LFDD+ ++ A+++H F S Sbjct: 1 MEEYLNPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFAS 60 Query: 61 KMRERGVEVLEMHNLLTETVQNPAALK------WILDRKITPDNVGIGLVDEVRAWLEGL 114 ++ VE+ + +L++E + + AL+ +IL+ +I D ++ ++ + L Sbjct: 61 ILKNNLVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFT----INLLKDYFSSL 116 Query: 115 EPRALAEFLIGGVAASDIAGAERSKVLTLFRDYLGKSSFVLPPLPNMMFTRDTSCWIYGG 174 + +I GV ++ S + G + F++ P+PN++FTRD I G Sbjct: 117 TIDNMISKMISGVVTEELKNYTSSLDDLV----NGANLFIIDPMPNVLFTRDPFASIGNG 172 Query: 175 VTLNPMHWPARRQETLLVAAVYKFHPAFTDAKFDVWYGDPDRDHGMATLEGGDVMPIGRG 234 VT+N M R++ET+ ++K+HP + +W + A+LEGGD + + +G Sbjct: 173 VTINKMFTKVRQRETIFAEYIFKYHPVYK-ENVPIWLNRWE----EASLEGGDELVLNKG 227 Query: 235 VVLVGMGERTSRQAVGQLAQALFA-KGAAERVIVAGLPNSRASMHLDTVFSFCDRDLVTV 293 ++++G+ ERT ++V +LA +LF K + + ++ +P +R+ MHLDTVF+ D + T Sbjct: 228 LLVIGISERTEAKSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTS 287 Query: 294 FPEVVNRIVPFTLRPGGDARYGIDIEREDKPFVDVVAQALGLKSLRVVETGGNDFAAERE 353 F + L + I I++E DV++ LG K + GG+ RE Sbjct: 288 FTSDDMYFSIYVLTYNPSSSK-IHIKKEKARIKDVLSFYLGRKIDIIKCAGGDLIHGARE 346 Query: 354 QWDDGNNMVCIEPGVVVGYDRNTYTNTLLRKAGVEVITIGSSELGRGRGGGHCMTCPVLR 413 QW+DG N++ I PG ++ Y RN TN L + G++V I SSEL RGRGG CM+ P++R Sbjct: 347 QWNDGANVLAIAPGEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIR 406 Query: 414 DPV 416 + + Sbjct: 407 EDI 409
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 404 bits (1040), Expect = e-145 Identities = 144/310 (46%), Positives = 193/310 (62%), Gaps = 13/310 (4%) Query: 2 RIVIALGGNALLQRNQPMTEVQQRENVKIAVAQIAQ-IAPGNELVIAHGNGPQVGLLALQ 60 R+VIALGGNAL QR Q + + +NV+ QIA+ IA G E+VI HGNGPQVG L L Sbjct: 4 RVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLH 63 Query: 61 ---GAAYPAVAPYPLDVLGAQTEGMIGYLIEQEMGNLLPP---DAPFATLLTQVEVDPAD 114 G A + P+DV GA ++G IGY+I+Q + N L + T++TQ VD D Sbjct: 64 MDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKND 123 Query: 115 PAFEHPTKPIGPVYSRDEAERLAQEKGWHIAPD-GDKFRRVVPSPRPRRIFEIRPVKWLL 173 PAF++PTKP+GP Y + A+RLA+EKGW + D G +RRVVPSP P+ E +K L+ Sbjct: 124 PAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLV 183 Query: 174 EKGTIVICAGGGGIPTRYDANGKLSGVEAVIDKDLCASLLARELSADLLVIATDVDGAYL 233 E+G IVI +GGGG+P + +G++ GVEAVIDKDL LA E++AD+ +I TDV+GA L Sbjct: 184 ERGVIVIASGGGGVPVILE-DGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 234 DWGKPTQALIEAAHPDELERL----GFAAGSMGPKVQAAIEFARQTGHDAVIGSLADIVA 289 +G + + +EL + F AGSMGPKV AAI F G A+I L V Sbjct: 243 YYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVE 302 Query: 290 IAEGRAGTRI 299 EG+ GT++ Sbjct: 303 ALEGKTGTQV 312
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 90.1 bits (223), Expect = 1e-23 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 6/187 (3%) Query: 1 MTGKRILVTGAGSGFGREVALRLAAKGHCVIAGVQIAPQITELSAEAARRGLALDAVKLD 60 + GK +TGA G G VA LA++G + A ++ ++ + +A D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 VT-CARERAQAARWD-----VDVLLNNAGAGEAGALVDLPVDIVRELFETNVFGPLELTQ 114 V A AR + +D+L+N AG G + L + F N G ++ Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 115 QVARGMIARGRGRIVFVSSIAGLITGAYTGAYCASKHALEAIAEAMHLELAAHGVQIAVV 174 V++ M+ R G IV V S + AY +SK A + + LELA + ++ +V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 175 NPGPYRT 181 +PG T Sbjct: 186 SPGSTET 192
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 60.2 bits (146), Expect = 4e-12 Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 12/261 (4%) Query: 59 IGALIFGRLADHFGRRPTLMINIACYSLLELASGFAPSLAALLVLRTLFGVAMGGEWGVG 118 A + G L+D FGRRP L++++A ++ AP L L + R + G+ G V Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVA 116 Query: 119 SALTMETVPPRARGAVSGLLQAGYPSGYLLASVVFGLLYPYIGWRGMFMIGVLPALLVLY 178 A + R G + A + G + V+ GL+ + F L L L Sbjct: 117 GAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLT 176 Query: 179 VRAKVPES-PAWKQMEKRARPGLVATLKQNWKLSIYAVVLMTAF--NFFSHGTQDLYPTF 235 +PES ++ +R +A+ + +++ A ++ F L+ F Sbjct: 177 GCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIF 236 Query: 236 LREQHHFDPHTVSWITIVLNI-GAIVGGLTFGWLSERIGRRRAI---FIAAMIALPVLPL 291 ++ H+D T+ I ++ + G ++ R+G RRA+ IA +L Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAF 296 Query: 292 ----WAFSTGALALAAGAFLM 308 W + LA+G M Sbjct: 297 ATRGWMAFPIMVLLASGGIGM 317
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.8 bits (160), Expect = 8e-15 Identities = 21/79 (26%), Positives = 35/79 (44%) Query: 4 RQASRQSGGTKARILDAAEDLFIEHGFEAMSMRQITSRAAVNLAAVNYHFGSKEALIHAM 63 R+ +++ T+ ILD A LF + G + S+ +I A V A+ +HF K L + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 64 LSRRLDQLNEERLRILDRF 82 + E L +F Sbjct: 63 WELSESNIGELELEYQAKF 81
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.008 Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 7/85 (8%) Query: 76 GRGPRAGGAHGGGGRPGGREGGGHGPYGSHG----GSREPRGDGGGYGARESRGDGGYGS 131 GRG G G GG G G G S G P G G G G GG G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWG---GGSGH 62 Query: 132 RESRGDGGYGSRESRGDGGYGSREP 156 G+G G G P Sbjct: 63 GNGGGNGNSGGGSGTGGNLSAVAAP 87
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.043 Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 9/108 (8%) Query: 119 LFQQKAFWRVIRTASEARAEAVYRDFAKQSETLAVNELQAAKLESQKALTDRQIAVA--- 175 ++A V + + T K E K T++ V Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 176 ------QERASRLQADLSIAREQRAAVATRQKDKLDETVALREQKSER 217 QE++ +Q ARE V ++ T A EQ ++ Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.028 Identities = 8/83 (9%), Positives = 26/83 (31%), Gaps = 3/83 (3%) Query: 48 EVPAPAAGVLAQVLQNDGDTVVADQVIATID---TEAKAGAAAAAAGAADVQPAAAPVAA 104 E+ ++ +++ +G++V V+ + EA ++ A ++ + + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 105 PAPAAQPAAAAASSTAAASPAAS 127 + S Sbjct: 158 RSIELNKLPELKLPDEPYFQNVS 180
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 171 bits (435), Expect = 5e-48 Identities = 102/435 (23%), Positives = 172/435 (39%), Gaps = 62/435 (14%) Query: 5 LRNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVAE--RVMDSNDIEKERGITILAKNCA 62 + NI ++AHVD GKTTL + LL SG E V + D+ +E++RGITI + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTKKALALGLK 122 ++E T +NI+DTPGH DF EV R LS++D +LL+ A +G QTR + +G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PIVVINKIDRPGARIDWV-------------INQTFDLFDKLGATE----EQLDFPIV-- 163 I INKID+ G + V I Q +L+ + T EQ D I Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 164 -----------------YASGLNGY---ASLDP-----AARDGDMRPLFEAILQHVPVRP 198 + SL P A + + L E I Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 ADPDAPLQLQITSLDYSTYVGRIGVGRITRGRIKPGQPVVMRFGPEGDVLNRKINQVLSF 258 + L ++ ++YS R+ R+ G + V R + + KI ++ + Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV--RISEKEKI---KITEMYTS 297 Query: 259 QGLERVQVDSAEAGDIVLINGIEDVGIGATICAVEAPEALPMITVDEPTLTMNFLVNSSP 318 E ++D A +G+IV++ E + + + + + I P L + Sbjct: 298 INGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 319 LAGREGKFVTSRQIRDRLMKELNHNVALRVKDTGDETVFEVSGRGELHLTILVENMRRE- 377 + D L++ V E + +S G++ + + ++ + Sbjct: 357 QREMLLDALLEISDSDPLLR-------YYVDSATHEII--LSFLGKVQMEVTCALLQEKY 407 Query: 378 GYELAVSRPRVVMQE 392 E+ + P V+ E Sbjct: 408 HVEIEIKEPTVIYME 422 Score = 33.7 bits (77), Expect = 0.002 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 1/100 (1%) Query: 387 RVVMQEIDGVKHEPYELLTVDLEDEHQGGVMEELGRRKGEMLDMVSDGRGRTRLEYRIPA 446 V+++ EPY + E+ + + ++D L IPA Sbjct: 525 EQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQL-KNNEVILSGEIPA 583 Query: 447 RGLIGFQSEFLTLTRGTGLMSHIFDSYAPVKEGSVGERRN 486 R + ++S+ T G + Y V + R Sbjct: 584 RCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPVCQPRR 623
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 72.2 bits (177), Expect = 8e-16 Identities = 40/268 (14%), Positives = 92/268 (34%), Gaps = 24/268 (8%) Query: 94 ADSQVALQQAEANLAQTVRQVRGLYVNDDQYRAQVALRQSDLSKAQDDLRRRLAVAQTGA 153 + Q Q E NL + + + ++Y + +S L L + A+A+ Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS-LLHKQAIAKHAV 254 Query: 154 VSQE--------EISHARDAVKAAQASLDAAGQQLASNRALTANTTVADHPNVLAAAAKV 205 + QE E+ + ++ ++ + +A ++ L N + + Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 206 RN----AYLNNARNTLPAPVTGYVAKRSVQ-VGQRVSPGTPLMSVVPLNAV-WVDANFKE 259 + + APV+ V + V G V+ LM +VP + V A + Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQN 374 Query: 260 VQLKHMRIGQPVELTADIYGSSVKYHGKVIGFSAGTGAAFSLLPAQNATGNWIKVVQRLP 319 + + +GQ + + + + +G ++G + + +V + Sbjct: 375 KDIGFINVGQNAIIKVEAFPYTR--YGYLVG-------KVKNINLDAIEDQRLGLVFNVI 425 Query: 320 VRVELDPKELKEHPLRIGLSMQVDVDIK 347 + +E + + + M V +IK Sbjct: 426 ISIEENCLSTGNKNIPLSSGMAVTAEIK 453 Score = 47.5 bits (113), Expect = 6e-08 Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 20/165 (12%) Query: 29 VIAIAAIAYGLYYLLVARFHETTDDAYVNGNVV------QITPQVTGTVIAVKADDTQTV 82 ++A + + + +++ + A NG + +I P V + + ++V Sbjct: 59 LVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESV 118 Query: 83 KSGDPLVVLDPADSQVALQQAEANLAQTVRQVRGLYVNDDQYRAQVALRQSDLSKAQ--- 139 + GD L+ L ++ + +++L Q +Q R Q+ R +L+K Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQA---------RLEQTRYQILSRSIELNKLPELK 169 Query: 140 --DDLRRRLAVAQTGAVSQEEISHARDAVKAAQASLDAAGQQLAS 182 D+ + + I + + + + + Sbjct: 170 LPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRA 214
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 135 bits (342), Expect = 6e-37 Identities = 84/396 (21%), Positives = 159/396 (40%), Gaps = 16/396 (4%) Query: 27 VFMNVLDTSIANVAIPTISGDLGVSSDQGTWVITSFAVANAISVPLTGWLTDRIGQVRLF 86 F +VL+ + NV++P I+ D WV T+F + +I + G L+D++G RL Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 87 LASIILFVISSWMCGLAPT-LPFLLASRVLQGAVAGPMIPLSQALLLSSYPRAKAPMALA 145 L II+ S + + + L+ +R +QGA A L ++ P+ A Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 146 LWSMTTLIAPVAGPILGGWISDNYSWPWIFYVNIPVGIAAAAVTWMIYRSRESAVRRAPI 205 L + GP +GG I+ W ++ IP+ I V +++ ++ + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPM-ITIITVPFLMKLLKKEVRIKGHF 199 Query: 206 DGVGLALLVIWVGSLQIMLDKGKDLDWFASTTIVVLALTALIAFAFFVVWELTAEHPVVD 265 D G+ L+ + G + ML F ++ + + ++++F FV P VD Sbjct: 200 DIKGIILMSV--GIVFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 266 LSLFRMRNFSGGTIALSVGYGLYFGNLVLLPLWLQTQIGYTATDAG-LVMAPVGFFAILL 324 L + F G + + +G G + ++P ++ + + G +++ P I+ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 325 SPLTGKFLSRTDPRYIATAAFLTFALCFWMRSRYTTGVDEWSLMAPTFVQGIAMAGFFIP 384 + G + R P Y+ ++ F S + + FV G ++ Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG-GLSFTKTV 368 Query: 385 LVSITLSGLPGHRIPAASGLSNFVRIMCGGIGTSIF 420 + +I S L A L NF + G G +I Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 73.9 bits (181), Expect = 2e-15 Identities = 44/298 (14%), Positives = 97/298 (32%), Gaps = 28/298 (9%) Query: 60 DKRKITLTRRHTS----EIKQADATGKARTIQVEVRKKRTFVKRDDVSETGADQAQAQTD 115 D ++L + K + G+ EV K+ V +++ QA + Sbjct: 951 DHLNVSLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSV 1010 Query: 116 EQAEAELKRREE--EARREAELLEKQAQELRERQERLEREEAERRAREEAAEAERRRAEE 173 E+ R +E + + + E ++ + + A+ R + Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 174 EAAAK-RAAAAQAEAAQQAAAAREQAQRAQSEPAEQSAQDEARAAAERAA---------- 222 EA + +A E AQ + +E E A +++A+ E+ Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 223 ----QREAAKKAEDAARE-----AADKARAEQEEIRKRREAAEAEARAIREMM--NTPRR 271 Q E + + ARE + +++ + A+ + + + + +T Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 272 AQVKAVEPPKPAEPPAAKAAEAKGTLHKPAKPAGEAAAARPAAKKPASGAPAPAAAPA 329 VE P+ P + + +KP + + P +PA+ + + A Sbjct: 1191 TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 63.2 bits (153), Expect = 5e-12 Identities = 36/321 (11%), Positives = 90/321 (28%), Gaps = 14/321 (4%) Query: 119 EAELKRREEEARREAELLEKQAQELRERQERLEREEAERRAREEAAEA-ERRRAEEEAAA 177 E E + + + QA E + A A E A Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 178 KRAAAAQAEAAQQAAAAREQAQRAQSEPAEQSAQDEARAAAERAAQREAAKKAEDAAREA 237 + + E +Q A R ++ A+ + + + + E + +E Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 238 ADKARAEQEEIRKRREAAEAEARAIREMMNTPRRAQVKAVEPPKPAEPPAAKAAEAKGTL 297 A + E+ ++ + + + +P++ Q + V+P K Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTS----QVSPKQEQSETVQPQAEPARENDPTVNIK--- 1156 Query: 298 HKPAKPAGEAAAARPAAKKPASGAPA-PAAAPAGDRTKKPGTGKSGWQDDAAKRRGIKTR 356 ++ A +PA + ++ + ++ ++ Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 357 GDSSGGVDRGWRGGPKGRGKHQDSASSFQAPTEPIVREVHVPETISVADLAHKMSIKASE 416 R R P H ++ + V + T + A L+ + Sbjct: 1217 NKPKNRHRRSVRSVP-----HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFV 1271 Query: 417 VIKVMMKMGQMVTINQVLDQE 437 + V + Q ++ ++ ++ Sbjct: 1272 ALNVGKAVSQHISQLEMNNEG 1292 Score = 56.2 bits (135), Expect = 6e-10 Identities = 32/224 (14%), Positives = 75/224 (33%), Gaps = 27/224 (12%) Query: 71 TSEIKQADATGKARTIQVEVRKKRTF-VKRDDVSETGADQAQAQTDEQAEAELKRREEEA 129 +E + T + R + E + + ++V+++G++ + QT E E +EE+A Sbjct: 1053 KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKA 1112 Query: 130 RREAELLEKQAQELRERQERLEREEAERRAREEAAEAERRRAEEEAAAKRAAAAQAEAAQ 189 + E E + QE+ + ++ ++ + + AE R + + A Sbjct: 1113 KVETE----KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADT 1168 Query: 190 QAAAAREQAQRAQSEPAEQSAQDEARAAAERAAQREAAKKAEDAAREAADKARAEQEEIR 249 + A ++ +P +S + + + + + + + R Sbjct: 1169 EQPA--KETSSNVEQPVTESTTVNTGNSVVENPENT----TPATTQPTVNSESSNKPKNR 1222 Query: 250 KRREAAEAEARAIREMMNTPRRAQVKAVEPPKPAEPPAAKAAEA 293 RR R+ VEP + + A Sbjct: 1223 HRRS----------------VRSVPHNVEPATTSSNDRSTVALC 1250
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 28.3 bits (62), Expect = 0.036 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 37 GASAAAAVAPAALAVPAASAARPAPLAQPAAPAIVDSQPQTRAQVYEAVKQMTALGRQLF 96 G +A A P A A A+ A PA L P+A + ++ A A L Sbjct: 12 GLTATAVCGPLAGASLASPATAPASLYAPSALVLTVGHGESAAT---AAPLRAVT---LT 65 Query: 97 FDPSLSGSGKLACASCHSPQHAFGPPNALPAQ 128 P+ SG+ A A+C + A G P+AL A+ Sbjct: 66 CAPTASGTHPAAAAACAELRAAHGDPSALAAE 97
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.0 bits (70), Expect = 0.011 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 17/79 (21%) Query: 104 LLQSLAQIASERPALYISGEESGAQIALRAQRLALLEGGASAADLKLLAEIQLEKIQATI 163 LL +L +I+ P L + + +I L L ++Q+E A + Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILS-----------------FLGKVQMEVTCALL 403 Query: 164 DAERPDVAVIDSIQTIYSE 182 + I IY E Sbjct: 404 QEKYHVEIEIKEPTVIYME 422
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 438 bits (1127), Expect = e-156 Identities = 207/353 (58%), Positives = 270/353 (76%) Query: 1 MPRPISATIHTAALANNLSVVRRHAAQSKVWAIVKANAYGHGLARVFPGLRGTDGFGLLD 60 M RPI A++ AL NLS+VR+ A ++VW++VKANAYGHG+ R++ + TDGF LL+ Sbjct: 1 MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDGFALLN 60 Query: 61 LDEAVKLRELGWAGPILLLEGFFRSTDIDVIDRYSLTTAVHNDEQMRMLETARLSKPVNV 120 L+EA+ LRE GW GPIL+LEGFF + D+++ D++ LTT VH++ Q++ L+ ARL P+++ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDI 120 Query: 121 QLKMNSGMNRLGYTPEKYRAAWERARACPGIGQITLMTHFSDADGERGVAEQMATFERGA 180 LK+NSGMNRLG+ P++ W++ RA +G++TLM+HF++A+ G++ MA E+ A Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQAA 180 Query: 181 QGIAGARSFANSAAVLWHPSAHFDWVRPGIMLYGASPSGRAADIADRGLKPTMTLASELI 240 +G+ RS +NSAA LWHP AHFDWVRPGI+LYGASPSG+ DIA+ GL+P MTL+SE+I Sbjct: 181 EGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEII 240 Query: 241 AVQTLAKGQAVGYGSMFVAEDTMRIGVVACGYADGYPRIAPEGTPVVVDGVRTRIVGRVS 300 VQTL G+ VGYG + A D RIG+VA GYADGYPR AP GTPV+VDGVRT VG VS Sbjct: 241 GVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVS 300 Query: 301 MDMLTVDLTPVPQAGVGARVELWGETLPIDDVAARCMTVGYELMCAVAPRVPV 353 MDML VDLTP PQAG+G VELWG+ + IDDVAA TVGYELMCA+A RVPV Sbjct: 301 MDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPV 353
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 28.7 bits (64), Expect = 0.049 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 4/139 (2%) Query: 13 FFSSLADSALLIAAIALLKDLHAPNWMIPLLKLFFVLSYVVLAAFVGAFADSRPKGHVMF 72 FFS L + L ++ + D + P + F+L++ + A G +D ++ Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 73 ITNSIKVVGCLIMLFGAHP----LIAYGIVGFGAAAYSPAKYGILTELLPPERLVAANGW 128 I G +I G ++A I G GAAA+ ++ +P E A G Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 129 IEGTTVGSIILGTVLGGAL 147 I +G +GG + Sbjct: 144 IGSIVAMGEGVGPAIGGMI 162
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.2 bits (104), Expect = 3e-08 Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 74 VAPVAQRSGVGLALLREAVRIARAERLDGVLLEVRPSNPRAIRLYERFGFVSVGRRRNYY 133 VA ++ GVG ALL +A+ A+ G++LE + N A Y + F+ Y Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLY 156 Query: 134 PAKHRSREDAI 144 + E AI Sbjct: 157 SNFPTANEIAI 167
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 5e-05 Identities = 57/271 (21%), Positives = 97/271 (35%), Gaps = 13/271 (4%) Query: 74 AFTLPIALFALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFV 133 + L A + G +D + RR V+L+S +V ++A A + L + V Sbjct: 51 LYALMQFACAPVLGALSDRFGRRPVLLVS-LAGAAVDYAIMATAPFLWV----LYIGRIV 105 Query: 134 GGCAGAMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVASVSPNAAF 193 G GA + + + E + S F AGP LGG + SP+A F Sbjct: 106 AGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPF 163 Query: 194 V---LSGLSYAGLIYALSRSIRGAAARPPVRERLATMLVQGVRYCGRARGIRGTLIRSSL 250 L RP R A + R+ + + + Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRP--LRREALNPLASFRWARGMTVVAALMAVFFI 221 Query: 251 FGFLGSPVWALLPLFAKTQFGGEARTYGVLLASFGA-GAASGALGGAAGRARLGREALVR 309 +G AL +F + +F +A T G+ LA+FG + + A+ ARLG + Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281 Query: 310 LCTLTFAAGMLATAWSPCQAVAMLGLAVAGG 340 L + G + A++ +A + + Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLLAS 312 Score = 35.2 bits (81), Expect = 5e-04 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 8/167 (4%) Query: 21 LAALRGPFAYRTFAAIWVAS-LVGNIGGSIQTVAASWLMTSMAPSPTMVSLVQTAFTLPI 79 LA+ R AA+ ++ +G + + T + + AF + Sbjct: 200 LASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILH 259 Query: 80 ALF-ALLSGVAADAWDRRTVMLLSQALMFSVALCLVALAAAGAMTPARLLVCMFVGGCAG 138 +L A+++G A R ++L M + + LA A A ++ + G Sbjct: 260 SLAQAMITGPVAARLGERRALMLG---MIADGTGYILLAFATRGWMAFPIMVLLASG--- 313 Query: 139 AMFQPAWQSAVTEQVPARELSAAIALDSFSMNFARTAGPALGGFIVA 185 + PA Q+ ++ QV + + GP L I A Sbjct: 314 GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 21/126 (16%) Query: 87 TVRSQVDGQITHVRFREGQQVRAGDVLVEIDRRALQAAADQATAKLEQDKATLANARLEL 146 ++ + + + +EG+ VR GDVL+++ +A + + L Q + ++ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 147 ----------------ARHQRLAEMNAAPVQML-----DTWKARVNELHAQIRGDQAAVQ 185 Q ++E + L TW+ + + + +A Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 186 NARVAV 191 + Sbjct: 218 TVLARI 223
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 755 bits (1951), Expect = 0.0 Identities = 273/1033 (26%), Positives = 495/1033 (47%), Gaps = 26/1033 (2%) Query: 9 FIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLPGADPVSVASTLAQP 68 FIR P+ ++ ++ AG A LPVA P + P + VSA PGAD +V T+ Q Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 69 LETQFSKIPYVTQMTSQSTLS-STSIVLQFSLERSIDAAANDVQSAIDAAAAQLPADLPS 127 +E + I + M+S S + S +I L F D A VQ+ + A LP ++ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 128 PPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLSQIDGVGSVSIGGQQKP 185 + S +M+ +S T D DYV + + +LS+++GVG V + G Q Sbjct: 125 QGIS-VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQY- 182 Query: 186 SIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVFNGT------TRSYTIYTNGQLTE 239 ++RI LD L L+ DV L + G GT + +I + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 240 PAQWNDAIV-AYRDGTPVRIRDIGQAVLGPEDNTLAAWIDGRRAISVGIYKKPGANTVST 298 P ++ + DG+ VR++D+ + LG E+ + A I+G+ A +GI GAN + T Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 299 VDKILARLPELEASLPPSLKIAVLADRTQTIRASLLDIELTLLLNVVLVVVVIYAFLGSV 358 I A+L EL+ P +K+ D T ++ S+ ++ TL ++LV +V+Y FL ++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 359 RTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENIARH-VE 417 R T+IP + VPV L G A++ GYS++ +++ M +A+G +VDDAIV+VEN+ R +E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 418 AGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVTLSMTIIVSA 477 P +A K +S+ + I++ L AV +P+ G G ++R+F++T+ + +S Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 478 FVSLTLTPMMASYLLRAHRHDAGRPPRP--GLFERAFARTAAAYERALDVALRHRFVTLC 535 V+L LTP + + LL+ + G F F + Y ++ L L Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 536 AFFASVAASVFLYVGIPKGFFPQQDTGVITGISEAAQTISVEDMARHSMALAAIIRADPA 595 + VA V L++ +P F P++D GV + + + E + + + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEK 602 Query: 596 --VEHCQMAVGGSAYAGTTVNNGRWYITLKPRDQRDA---TADEVIRRLRPQFAKVPGVR 650 VE V G +++G N G +++LKP ++R+ +A+ VI R + + K+ Sbjct: 603 ANVES-VFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGF 661 Query: 651 MYLQAAQDVIIGARLARTQYQLTLQSA-DVGALTTWAPRLLARLSGLP-QLRDVASDQQV 708 + ++ ++L Q+ ALT +LL + P L V + Sbjct: 662 VIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLE 721 Query: 709 NGSALSVAIDRDQAARYGLTPEAIDGTLYDAFGSRQVAQYFTQLSTYKVIMETLPSLQRD 768 + + + +D+++A G++ I+ T+ A G V + + K+ ++ + Sbjct: 722 DTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRML 781 Query: 769 PGTLDRIYMKAPSGALVPLSSVARWTTDTVQPLSVNHQSHFPSVTISFNLAPGVSLGEAT 828 P +D++Y+++ +G +VP S+ + + + PS+ I APG S G+A Sbjct: 782 PEDVDKLYVRSANGEMVPFSAFTT-SHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 829 AAIEAARASLRMPPAVVGSFQGTAQAFQSTLATMPMLILSALIVAYLVLGALYGSFIHPW 888 A +E + ++P + + G + + + P L+ + +V +L L ALY S+ P Sbjct: 841 ALME--NLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 889 TILSTLPSAGVGAIATLWLFKYDFNLIALIGVILLIGIVKKNGIMMVDFAIAATRERNMT 948 +++ +P VG + LF ++ ++G++ IG+ KN I++V+FA + Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 949 SLDAIRSACLLRLRPIMMTTMTALFGALPLMLTPGMGSELRQPLGYAMVGGLLVSQVLTL 1008 ++A A +RLRPI+MT++ + G LPL ++ G GS + +G ++GG++ + +L + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1009 FTTPVIYLYLDTL 1021 F PV ++ + Sbjct: 1019 FFVPVFFVVIRRC 1031 Score = 89.9 bits (223), Expect = 3e-20 Identities = 78/509 (15%), Positives = 164/509 (32%), Gaps = 37/509 (7%) Query: 4 NLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQVSAVLP-GADPVSVA 62 N + L+ A I+ V + LP + LP+ + LP GA Sbjct: 528 NSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQ 587 Query: 63 STLAQPLETQF---SKIPYVTQMTSQSTLSSTS-------IVLQFSLERSIDAAANDVQS 112 L Q + + + S + + L+ ER + N ++ Sbjct: 588 KVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEER--NGDENSAEA 645 Query: 113 AIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAIS---------STLPLTTIDDYVETR 163 I A + L + I+ L + + L + Sbjct: 646 VIHRAKME----LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQL 701 Query: 164 LTKSLSQIDGVGSVSIGGQQ-KPSIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVF 222 L + + SV G + ++++D K + G+S D+ + +S G F Sbjct: 702 LGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDF 761 Query: 223 NGTTRSYTIYTNGQ---LTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPEDNTLAAWIDG 279 R +Y P + V +G V + L +G Sbjct: 762 IDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLER-YNG 820 Query: 280 RRAISVGIYKKPGANTVSTVDKILARLPELEASLPPSLKIAVLADRTQTIRASLLDIELT 339 ++ + PG ++ +A + L + LP + + R S Sbjct: 821 LPSMEIQGEAAPG----TSSGDAMALMENLASKLPAGIGYDW-TGMSYQERLSGNQAPAL 875 Query: 340 LLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVG 399 + ++ V+V + + A S + + VP+ + G + D ++ + +G Sbjct: 876 VAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIG 935 Query: 400 FVVDDAIVMVENI-ARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLLPLLLMSGII 458 +AI++VE + G+ ++A L + I SL+ + +LPL + +G Sbjct: 936 LSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAG 995 Query: 459 GRMFREFAVTLSMTIIVSAFVSLTLTPMM 487 + + ++ + +++ P+ Sbjct: 996 SGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.026 Identities = 34/191 (17%), Positives = 52/191 (27%), Gaps = 22/191 (11%) Query: 335 SDRLSLFADVGYTRNFHG--AAGGMNAFDSDVEMFSIGADYKLSEASRAGALLSSGNANG 392 S+ + L Y RN + A N + + Y G L G Sbjct: 1331 SNNVQLGGVFTYVRNSNNFDKATSKNTL----AQVNFYSKYYADNHWYLGIDLGYGKFQS 1386 Query: 393 SLAGGQGR-IGLHAYRLGVY--HAFERAGLFVRAYAGAGWSR-----YRL--DRAAVLPG 442 L H + G+ AF + G +S + L R V P Sbjct: 1387 KLQTNHNAKFARHTAQFGLTAGKAFNLGNFGITPIVGVRYSYLSNADFALDQARIKVNPI 1446 Query: 443 AVRASTSGFDFGALVKAGYLFALGGVRLGPVADVGYTQLVARGYTEDGDPILAQNVGVQR 502 +V+ + + D Y + LG + P+ Y G A NV Q+ Sbjct: 1447 SVKTAFAQVDLS------YTYHLGEFSVTPILSARYDANQGSGKINVNGYDFAYNVENQQ 1500 Query: 503 LKGVSAGAGVR 513 Sbjct: 1501 QYNAGLKLKYH 1511
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 36.0 bits (83), Expect = 2e-04 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 15/119 (12%) Query: 116 IDDERVRRDLDAGKVVIITGFQGV---DPDGHITTL-GRGGSDTSAVAVAAALEADECLI 171 ++ E +++ ++ G +VI +G GV DG I + D + +A + AD +I Sbjct: 174 VEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMI 233 Query: 172 YTDVDGVYTTDPRVVEEARRLDSVTFEEMLEMA--------SLGSKVLQ-IRSVEFAGK 221 TDV+G E+ + L V EE+ + S+G KVL IR +E+ G+ Sbjct: 234 LTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE 290
>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature. Length = 144 Score = 28.3 bits (62), Expect = 0.027 Identities = 15/50 (30%), Positives = 23/50 (46%) Query: 15 VATAAVAPADAFAATAKTAQSAKGKKSAAKKSLRAASSSAEPRAKGARKR 64 +A+ A APA +A +A G+ +A LRA + + P A G Sbjct: 27 LASPATAPASLYAPSALVLTVGHGESAATAAPLRAVTLTCAPTASGTHPA 76
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 5e-04 Identities = 12/58 (20%), Positives = 22/58 (37%) Query: 49 VPSPSAGTVKEVKVKVGDAVSQGSLIVLLDGAQAAAQPAQANGAATSAAQPAAAPAAA 106 + VKE+ VK G++V +G +++ L A A + + A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL 156 Score = 31.0 bits (70), Expect = 0.014 Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 162 VPSPAAGVVKDIKVKVGDAVSEGSLIVVLEASGGAAA 198 + +VK+I VK G++V +G +++ L A G A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD 135
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.012 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 18/85 (21%) Query: 711 PVLIEQVLV-NLMKNAAEAMQEARPQAENGVIRVVADLEAGFVDIRVIDQGPGVDEATAE 769 P ++ Q LV N +K+ + G I + + G V + V + G + T E Sbjct: 256 PPMLVQTLVENGIKHGIA------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE 309 Query: 770 RLFEPFYSTKSDGMGMGLNICRSII 794 S G G+ N+ + Sbjct: 310 ----------STGTGL-QNVRERLQ 323
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 113 bits (283), Expect = 2e-31 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%) Query: 11 TVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQIACLILDVRMSGM 70 T+ V DDD A+R L L GY V+ S+A AG ++ DV M Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----AGDGDLVVTDVVMPDE 60 Query: 71 SGLELQERLIAENAALPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLE 130 + +L R+ LP++ ++ A+ +KGA D++ KPFD EL ++ R L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 131 KARNESKSVQEQRAASERLSKLTAREQQVLERI 163 + + +++ L +A Q++ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVL 153
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 8e-07 Identities = 66/352 (18%), Positives = 120/352 (34%), Gaps = 51/352 (14%) Query: 52 TEFGLIAAMPVLTGSLIRVPLGIWTDRYGGRIVFFILMLVTVVPIWLISYATELWQFLVL 111 +G++ A+ L LG +DR+G R V + + V +++ A LW + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 112 GLFVGLAGGSFSVGTPYVA---------RWFPKARQGLAMGVFGAGNSGAAVNKFVAPAL 162 + G+ G + +V Y+A R F G FG G VA + Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDERARHF-----GFMSACFGFG--------MVAGPV 149 Query: 163 IA--AAGTWTIVPRVYAVAMLAMALLFWLFSATDPAHRSTNATSLRA-------QLRVLK 213 + G P A A+ + L F + A + Sbjct: 150 LGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGM 209 Query: 214 NPRVWRYSQYYSVVFGGYVGLSLWLTQYYVGEYGFGIQSAAFLAACFSLPGGVLRA-IGG 272 + ++ + G V +LW + + + + A F + + +A I G Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALW-VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 273 WLSDRYGAYRTTWWVMWVCWVMFFLLSYPPTDFTIRAAHGPLGFHLSLTPVAFTALLFAV 332 ++ R G R M + LL++ A G + F + + LL + Sbjct: 269 PVAARLGERRALMLGMIADGTGYILLAF--------ATRGWMAFPIMV-------LLASG 313 Query: 333 GIAMAVGKASVFKFIADEFPNDIGAVSGVVGLAGGLAGFALPILFGALVDLT 384 GI M +A + + + +E G + G + L P+LF A+ + Sbjct: 314 GIGMPALQAMLSRQVDEE---RQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 32.0 bits (72), Expect = 0.002 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 36 SARPAGELTMIAGLSPSAASAHLARLTDGGLLAL---DVRGRHRYYRIATPDIAAAIEAL 92 R A + + ++P A A + G +A + R + P+ A +EA+ Sbjct: 254 GTRYAIDKAAMRNIAPLPAEGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAV 313 Query: 93 ANVAQAA 99 NVA AA Sbjct: 314 FNVAAAA 320
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 2e-04 Identities = 38/249 (15%), Positives = 63/249 (25%), Gaps = 18/249 (7%) Query: 619 PQPGVAQPTAPHAPGTPPNAMRPDAARPNEARPAPAPSARNGVPRPPAAVENPGMRDEA- 677 P+ T T PN ++ D A VP P A + A Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 678 RAPGEAPRPQPSWTQPHPPIQQQR--ANEGGPRASGEPNAPLNYRSPTQNALPPIRSTPT 735 + E+ + + Q R A E +S ++ T Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 736 PTHSAPPAPPPAERAQPQPGPAPRNAMRAPEAPRQEVAPPAPRNEYRAPAPAPRPQIEAP 795 E + Q P + + + + V P A PA P + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA------EPARENDPTVNIK 1156 Query: 796 RMEAPRMPAPRAEAPRMEPRPAPPPPAVP-------HNPPPAPRQEPPHQARP--DQQHG 846 ++ E P E P ++ P P +P + + Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 847 FAPRREERR 855 P+ RR Sbjct: 1217 NKPKNRHRR 1225
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 376 bits (966), Expect = e-129 Identities = 133/388 (34%), Positives = 202/388 (52%), Gaps = 40/388 (10%) Query: 101 FDYVTVPYECDRIVESVGHAYGMVTLSEGLAPAAATVRNEGEMVGTCEAMLALFKMIRKV 160 +DY+ P++ ++ +G A + + ++ +VG AM +++++ ++ Sbjct: 99 YDYLPKPFDLTELIGIIGRA--LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156 Query: 161 ASTDAPVFISGESGTGKELTAVAIHERSSRAGAPFVAINCGAIPPTLLQAELFGYERGAF 220 TD + I+GESGTGKEL A A+H+ R PFVAIN AIP L+++ELFG+E+GAF Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 221 TGANQRKIGRIEAANGGTLFLDEIGDLPFESQASLLRFLQEHKVERVGGHQSIPVDVRII 280 TGA R GR E A GGTLFLDEIGD+P ++Q LLR LQ+ + VGG I DVRI+ Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIV 276 Query: 281 SATHVDMQIALRNGRFREDLYHRLCVLKLEEPPLRERGKDIEILARHMLERFKGDAHRRL 340 +AT+ D++ ++ G FREDLY+RL V+ L PPLR+R +DI L RH +++ + + + Sbjct: 277 AATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKEG-LDV 335 Query: 341 RGFTPDAIAALHNYAWPGNVRELINRVRRAIVMSEGRMISAADLELSGYAEVA------- 393 + F +A+ + + WPGNVREL N VRR + +I+ +E +E+ Sbjct: 336 KRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKA 395 Query: 394 ------------------------------PMSLEEARESAERHAIEVALLRHRGRLADA 423 + E I AL RG A Sbjct: 396 AARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKA 455 Query: 424 ARELGVSRVTLYRLLCAYGMRDDGGARA 451 A LG++R TL + + G+ +R+ Sbjct: 456 ADLLGLNRNTLRKKIRELGVSVYRSSRS 483
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 357 bits (917), Expect = e-121 Identities = 145/453 (32%), Positives = 216/453 (47%), Gaps = 46/453 (10%) Query: 53 VHVARSANEAARRVKPNQPQAGIADL---DGFAPRELPTLEAVLRQQQVGWIALAGDTRI 109 V + +A R + + D+ D A LP ++ V + ++ Sbjct: 30 VRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPV--LVMSAQNTF 87 Query: 110 NDPDVRRLIRQYCFDYMQGLPPHETIDYLVGHAYGMVALCDLDVTAGAAATGDEMVGACD 169 + + +DY+ + ++G A + G +VG Sbjct: 88 MTA--IKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR-RPSKLEDDSQDGMPLVGRSA 144 Query: 170 AMQQLFRTIRKVAATDATVFISGESGTGKELTALAIHERSERRKAPFVAINCGAIPNHLL 229 AMQ+++R + ++ TD T+ I+GESGTGKEL A A+H+ +RR PFVAIN AIP L+ Sbjct: 145 AMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLI 204 Query: 230 QSELFGYERGAFTGASQRKVGRVEAADGGTLFLDEIGDMPLESQASMLRFLQEGKIERLG 289 +SELFG+E+GAFTGA R GR E A+GGTLFLDEIGDMP+++Q +LR LQ+G+ +G Sbjct: 205 ESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVG 264 Query: 290 GHESIPVDVRIISATHVDLDAAMREGRFRDDLYHRLCVLKLDEPPLRARGKDIEILAHHI 349 G I DVRI++AT+ DL ++ +G FR+DLY+RL V+ L PPLR R +DI L H Sbjct: 265 GRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHF 324 Query: 350 LHQFRSDGARRIHGFTSCAIEAMYNYHWPGNVRELINRIRRAIVMSDSRQLSAADLDL-- 407 + Q +G + F A+E M + WPGNVREL N +RR + ++ ++ Sbjct: 325 VQQAEKEG-LDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENEL 383 Query: 408 -----------------------------------APFAALQATTLAEARERAERRTIEA 432 A + E I A Sbjct: 384 RSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILA 443 Query: 433 SLLRHRNRLTEAAAELGVSRATLYRLMVSHGLR 465 +L R +AA LG++R TL + + G+ Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 58.3 bits (141), Expect = 7e-12 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 27/160 (16%) Query: 1 MKILVTGANGQVGWELARSLAVLGQVV-----------PLTRE--------------QAD 35 MK LVTGA G +G+ +++ L G V ++ + D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 36 LGRPETLARIVEDAKPDVVVNAAAYTAVDAAETDGAAANVINGEA-VGVLAAATKRVGGL 94 L E + + + V + AV + + A N + +L Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 95 FVHYSTDYVFDGTKPSPYIETDPT-CPVNAYGASKLLGEL 133 ++ S+ V+ + P+ D PV+ Y A+K EL Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL 160
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 175 bits (445), Expect = 3e-54 Identities = 90/350 (25%), Positives = 136/350 (38%), Gaps = 45/350 (12%) Query: 2 ILVTGGAGFIGANFVLDWLAQSDEAVLNVDKLT--YAGNLGTLK-SLQGNPKHVFARVDI 58 LVTG AGFIG + L + V+ +D L Y +L + L P F ++D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQ-VVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 59 CDRAAIDALLAQHKPRAIVHFAAESHVDRSIHGPADFVQTNVVGTFTLLEAARQYWSALG 118 DR + L A + V S+ P + +N+ G +LE R Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN----K 117 Query: 119 PDAKAAFRFLHVSTDEVFGSLSPADPQFSETTPYA-PNSPYSATKAGSDHLVRAYHHTYG 177 L+ S+ V+G L+ P FS P S Y+ATK ++ + Y H YG Sbjct: 118 IQ-----HLLYASSSSVYG-LNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTYSHLYG 170 Query: 178 LPVLTTNCSNNYGPYQFPEKLIPLMIANALGGKPLPVYGDGQNVRDWLYVGDHCSAIREV 237 LP YGP+ P+ + L GK + VY G+ RD+ Y+ D AI + Sbjct: 171 LPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRL 230 Query: 238 L------------------ARGVPGETYNVGGWNEKKNLDVVHTLCDLLD-EARPKAGGS 278 A P YN+G + + +D + L D L EA+ Sbjct: 231 QDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN---- 286 Query: 279 YRDQITYVTDRPGHDRRYAIDARKLERELGWKPAETFETGLAKTVRWYLD 328 + +PG + D + L +G+ P T + G+ V WY D Sbjct: 287 ------MLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>SECA#SecA protein signature. Length = 901 Score = 33.7 bits (77), Expect = 0.001 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 116 LNRRLPRAVARTREGDFSLNGLLGFDLFGKTVGVIGTGLI--GSVFARIMTGFGMRVLAH 173 L +P A A RE + G+ FD V ++G G++ A + TG G + L Sbjct: 60 LENLIPEAFAVVREASKRVFGMRHFD-----VQLLG-GMVLNERCIAEMRTGEG-KTLTA 112 Query: 174 SLPPHDDALIALGVRYVPLDALLAEAD 200 +LP + +AL GV V ++ LA+ D Sbjct: 113 TLPAYLNALTGKGVHVVTVNDYLAQRD 139
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.6 bits (121), Expect = 5e-09 Identities = 95/399 (23%), Positives = 149/399 (37%), Gaps = 37/399 (9%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPNVARDLGVSIPAA---GMLVSGYALGVTIGAPILAVV 61 L +A+ A GIG +IM +LP + RDL S G+L++ YAL AP+L + Sbjct: 11 LSTVALDAVGIG----LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 62 TAKMPRKAALLALIGVFIVGNLFCAIAPGYATLMVARVVTAFCHGAFFGIGSVVASNLVA 121 + + R+ LL + V A AP L + R+V G+ +A ++ Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIA-DITD 125 Query: 122 PNKRAQAIALMFTGLTLANVLGVPLGTALGQAFGWRATFWAVTGIGALAAAALAFCVPKR 181 ++RA+ M V G LG +G F A F+A + L F +P+ Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 182 LEMPAAGIAREFGVLRNPQVLMVLGISVLASASLFTVFTYIAPI-----------LEDVT 230 + + RE NP + A+L VF + + ED Sbjct: 185 HKGERRPLRRE---ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRF 241 Query: 231 GFTPHDVTLVLLLFG-LGLTVGGTVGGKLADW---RRIPSLVATLASIGVVLAAFAGTMR 286 + + + L FG L + G +A RR L G +L AFA Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 287 TPLPALVTIFVWGVLAFAIVPPLQILIVDRAS-HAPNLASTLNQGAFNLGNALGAWLGGT 345 P +V + G+ +P LQ ++ + +L + +G L Sbjct: 302 MAFPIMVLLASGGI----GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 346 AIHAGVPLAK-LPW-AGAAL---AMAALALTLWSASLER 379 A + W AGAAL + AL LWS + +R Sbjct: 358 IYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQR 396
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.1 bits (112), Expect = 7e-08 Identities = 95/395 (24%), Positives = 152/395 (38%), Gaps = 25/395 (6%) Query: 21 LILSVAVVGLGTGATLPLTALALTEAGHGTRIV---GILTAAQAGGGLAVVPFVTAITKR 77 ++ +VA+ +G G +P+ L + H + GIL A A A P + A++ R Sbjct: 10 ILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDR 69 Query: 78 LGARQVIVASVVVLAAATALMQFTSNLVVWGVLRVVCGAALMLLFTIGEAWVNQLADDAT 137 G R V++ S+ A A+M L V + R+V G G A++ + D Sbjct: 70 FGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADITDGDE 128 Query: 138 RGRVVAIYATNFTLFQMAGPVLVSQIAGMTH-----VRFALSGTLFLLAL----PSLASI 188 R R + F +AGPVL + G + AL+G FL S Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGE 188 Query: 189 RKTPIADEPHHDAHDRWTRVIPKMPALVVGTAFFALFDTLALSLLPIFAMAR--GVASEA 246 R+ + + A RW R + + AL+ L + +L IF R A+ Sbjct: 189 RRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI 248 Query: 247 AVLFAAILLFGDTAMQFPIGWLADKLGRERVHLGAGCVVLALLPLLPAVVTTPWLCWPLL 306 + AA + A G +A +LG ER L G + +L A T W+ +P++ Sbjct: 249 GISLAAFGILHSLAQAMITGPVAARLG-ERRALMLGMIADGTGYILLAFATRGWMAFPIM 307 Query: 307 FVLGAAAGSVYTL----SLVACGERFRGSALVTASSLVSASWSAASFGGPLVAGALMEQF 362 +L + + L S ER +G + ++L S S GPL+ A+ Sbjct: 308 VLLASGGIGMPALQAMLSRQVDEER-QGQLQGSLAALT----SLTSIVGPLLFTAIYAAS 362 Query: 363 GGDALIGVLIVSAIAFVGAALWERRALPMQAARRG 397 I A ++ RR L A +R Sbjct: 363 ITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRA 397
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 8e-07 Identities = 77/398 (19%), Positives = 124/398 (31%), Gaps = 59/398 (14%) Query: 50 VAPSVIAEWGVKKQA---LGPVFSASLFGMLLGALGLSVLADRIGRRPVLIGATLFFALA 106 V P ++ + G + + A L L+DR GRRPVL+ + A+ Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 107 MLATPFATSIPILIALRFVTGLGLGCIMPNAMALVGECSPSAHRVKRM----MIVSCGFT 162 A + +L R V G+ G A A + + + R + G Sbjct: 87 YAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 163 LGAALGGFVSAALIPAFGWRAVFFVGGAVPLALAAAMAASLPESPQLLVLRGRHDAARAW 222 G LGG + F A FF A+ LPES H R Sbjct: 146 AGPVLGGLMGG-----FSPHAPFFAAAALNGLNFLTGCFLLPES---------HKGERRP 191 Query: 223 LAKFAPRLAVPPDTRLVVREAGPRGAPVAELFRSGRARVTLLLWAINF-MNLIDLYFLSN 281 L + A P+A + V L A+ F M L+ + Sbjct: 192 LRREALN-------------------PLASFRWARGMTVVAALMAVFFIMQLVGQVPAAL 232 Query: 282 WLPTVMRDAGYASGTAVIVGTVLQTGGVIGTLS----LGWFIERHGFARVLFACFACATI 337 W+ + A +G L G++ +L+ G R G R L Sbjct: 233 WVIFGEDRFHW---DATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGT 289 Query: 338 AIGLIGSVAHAFVWLLAAVFVGGFCVVGGQPAVNALAGHYYPTSLRSMGIGWSLGVGRVG 397 L+ ++ V + + G PA+ A+ + G + + Sbjct: 290 GYILLAFATRGWMAFPIMVLLASGGI--GMPALQAMLSRQVDEERQGQLQGSLAALTSLT 347 Query: 398 SVLGPLVGGQLIA--------LGWSNDALFHAAAVPVL 427 S++GPL+ + A W A + +P L Sbjct: 348 SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 73.8 bits (181), Expect = 1e-17 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 6/243 (2%) Query: 7 LFYKEILRFWKVSFQTVLAPVVTALLYLTIFGHALTGRVNVYPGVEYVSFLVPGLVMMSV 66 ++ + + + K + ++L + L+YL G L V GV Y +FL G+V S Sbjct: 19 VWRRNYIAWKKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSA 78 Query: 67 LQNA-FANSSSSLIQSKITGNLVFMLLPPLSSADIFGAYVLASVVRGLAVGAGVFVVTVW 125 + A F ++ + + ML L DI + + + GAG+ VV Sbjct: 79 MTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAA 138 Query: 126 FIPMSFAAPLYIVAFALFGSAILGTLGLIAGIWAEKFDQLAAFQNFLIMPLTFLSGVFYS 185 + + LY + +LG++ A +D +Q +I P+ FLSG + Sbjct: 139 LGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFP 198 Query: 186 THSLPPVWREVSRLNPFFYMIDGFRYGFFG--IADVNPLASLS---VVAGFFVLLALIAM 240 LP V++ +R P + ID R G + DV +V FF+ AL+ Sbjct: 199 VDQLPIVFQTAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258 Query: 241 RLL 243 RLL Sbjct: 259 RLL 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.039 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 39 LLGPNGAGKTTLISILAGL 57 L G G GK+TLI+ L GL Sbjct: 601 LEGTGGIGKSTLINTLVGL 619
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 28.2 bits (63), Expect = 0.024 Identities = 12/73 (16%), Positives = 22/73 (30%) Query: 74 RTTQLAMGRNWRTATPAQQQQVIEQFKQLLIRTYSGALAQLKPDQQIQYPPFRADADATD 133 R + A ++ +Q +T + L+ L P + T+ Sbjct: 107 NLGSALQSRPFEFVRRADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTN 166 Query: 134 VVVRTVAMNNGQP 146 V R M+ P Sbjct: 167 VARRIALMDRTSP 179
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 224 bits (572), Expect = 2e-74 Identities = 85/220 (38%), Positives = 114/220 (51%), Gaps = 8/220 (3%) Query: 32 AAAALSGCATVQTPTKG--DPFEGFNRTMYTFNDKV-DQYALKPVARGYQWAVPQPMRDS 88 L GCA+ T +G DP EGFNRTMY FN V D Y ++PVA ++ VPQP R+ Sbjct: 11 GTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWRDYVPQPARNG 70 Query: 89 VTNFFSNIGDVYIAANNLVQLKIADGVGDIMRVVINTVFGVGGLFDVATLAKLPKHAND- 147 ++NF N+ + + N +Q G+ R +NT+ G+GG DVA +A + Sbjct: 71 LSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGMANPKLQRTEP 130 Query: 148 --FGVTLGHYGVPSGPYLVLPLLGPSTVRDTAGLAVDYAGNPLTYVRPDGVSWGLFGLNL 205 FG TLGHYGV GPY+ LP G T+RD G D A P+ +S G + L Sbjct: 131 HRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMAD-ALYPVLSWLTWPMSVGKWTLEG 189 Query: 206 VNTRANLLGAGDVLEAAAIDKYSFVRNAYLQRRQALIGGA 245 + TRA LL + +L + D Y VR AY QR + G Sbjct: 190 IETRAQLLDSDGLLR-QSSDPYIMVREAYFQRHDFIANGG 228
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 359 bits (922), Expect = e-125 Identities = 108/344 (31%), Positives = 181/344 (52%), Gaps = 2/344 (0%) Query: 12 DRTEAATPKRREKAREEGQVARSRELASFALLSAGFYGAWMLSGPIGEHLRTMLHTAFSF 71 ++TE TPK+ AR++GQVA+S+E+ S AL+ A LS EH ++ Sbjct: 4 EKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLM--LIPA 61 Query: 72 DRAAAFDTNRMLSHAGTLSLEGLYALAPVLALTGVAALAAPMAMGGWLVSTKTFELKFER 131 +++ + + + LE Y P+L + + A+A+ + G+L+S + + ++ Sbjct: 62 EQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 132 LNPITGLGRIFSIQGPIQLGMSIAKTLVVGGIGGIAIWRSKDELLGLATQPLHAALADAL 191 +NPI G RIFSI+ ++ SI K +++ + I I + LL L T + Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 192 HLVAVCCGMTVAGMLVVAGLDVPYQLWQYNKKLRMTKEEVKREHRENEGDPHVKGRIRQQ 251 ++ + G +V++ D ++ +QY K+L+M+K+E+KRE++E EG P +K + RQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 252 QRAMARRRMMANVPTADVVVTNPTHFAVALKYTDGEMRAPKVVAKGVNLVAARIRELAAE 311 + + R M NV + VVV NPTH A+ + Y GE P V K + +R++A E Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEE 301 Query: 312 HHVPLLEAPPLARALYHNVELEREIPGTLYSAVAEVLAWVYQLK 355 VP+L+ PLARALY + ++ IP A AEVL W+ + Sbjct: 302 EGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.004 Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 28 GGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLA 70 GGG G + +G G G + G GTGG + + P+A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVA 89 Score = 30.1 bits (67), Expect = 0.022 Identities = 17/56 (30%), Positives = 22/56 (39%) Query: 17 AAATAALVAACGGGGDGGSNASVNTGTGGGDTSAGGGSNGGTGGTGGSGSTPLASN 72 A +T+ + G G AS +G + GGGS G GGSG N Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Score = 29.7 bits (66), Expect = 0.025 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 28 GGGGDGGSNASVNTGTGGGDTS-------AGGGSNGGTGGTGGSGSTPLASNQAAITVST 80 GG DG +S N GGG S +G G+ GG G +GG T + A V+ Sbjct: 31 GGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAF 90 Query: 81 G 81 G Sbjct: 91 G 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 5e-23 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 12 MDKSMKILVVDDFPTMRRIVRNLLKELGYSNVDEAEDGLAGLARLRGGGYDFVISDWNMP 71 M + ILV DD +R ++ L GY V + + G D V++D MP Sbjct: 1 MTGA-TILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMP 58 Query: 72 NLDGLAMLKEIRADASLTHLPVLMVTAESKKENIIAAAQAGASGYVVKPF 121 + + +L I+ LPVL+++A++ I A++ GA Y+ KPF Sbjct: 59 DENAFDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF 106
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.4 bits (162), Expect = 4e-14 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 13/143 (9%) Query: 7 KIKVLCVDDSALIRSLMTEIINSQPDMEVCATAPDPLVARELIKQHNPDVLTLDVEMPRM 66 +L DD A IR+++ + ++ + I + D++ DV MP Sbjct: 3 GATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 67 DGLDFLEKLMRLRP-MPVVMVSSLTERGSEITLRALELGAVDFVTKPRVGIRDGMLDYSE 125 + D L ++ + RP +PV+++S+ ++A E GA D++ KP D +E Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNT--FMTAIKASEKGAYDYLPKP--------FDLTE 110 Query: 126 KLADKVRAASRARVRQNPQPHAA 148 + RA + + R + + Sbjct: 111 LIGIIGRALAEPKRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 46.0 bits (109), Expect = 3e-07 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 52/151 (34%) Query: 449 ELDKSLIERIIDPLT--HLVRNSLDHGIETVEARRAAGKDAVGQLVLSAAHHGGNIVIEV 506 +++ ++++ + P+ LV N + HGI G+++L G + +EV Sbjct: 245 QINPAIMDVQVPPMLVQTLVENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEV 296 Query: 507 SDDGAGLNRERILAKAAKQGMQISENISDDEVWNLIFAPGFSTAEVVTDVSGRGVGMDVV 566 + G+ + G G+ V Sbjct: 297 ENTGSLALKNTK--------------------------------------ESTGTGLQNV 318 Query: 567 KRNIQSMGG---HVEISSQAGRGTTTRIVLP 594 + +Q + G +++S + G +++P Sbjct: 319 RERLQMLYGTEAQIKLSEKQG-KVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 8e-18 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 4 TILAIDDSATMRTLLSATLGEAGYDVTVASDGEVGLDVALATRFDLVLTDHHMPRKNGLE 63 TIL DD A +RT+L+ L AGYDV + S+ A DLV+TD MP +N + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LIVALRRQLGYEATPILVLTTENGDAFKDAARAAGATGWIEKPIDPDALIELVA 117 L+ +++ P+LV++ +N A GA ++ KP D LI ++ Sbjct: 65 LLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 39.5 bits (92), Expect = 1e-05 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 182 FAMSSDAVEPYMRDILREIGKTLNDV---PNRIIVQGHTDAVPYAGGEKGYSNWELSADR 238 F + ++P + L ++ L+++ ++V G+TD + G Y N LS R Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI----GSDAY-NQGLSERR 277 Query: 239 ANASRRELIAGGMDEAKVLRV-LGLASTQNLNKADPLDPENRRISIIVLNRKSELAL 294 A + LI+ G+ K+ +G ++ N D + I + +R+ E+ + Sbjct: 278 AQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334