>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 91.8 bits (228), Expect = 8e-22 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 24/160 (15%) Query: 264 DIDWTQTDDDTKYESHGMHVTGIVAGNSKEAAATGERFLGIAPEAQVMFMRVFANDIMGS 323 + D D HG HV G +A +G+APEA ++ ++V G Sbjct: 74 EGDPEIFKDY---NGHGTHVAGTIAAT-----ENENGVVGVAPEADLLIIKVLNKQGSGQ 125 Query: 324 AESLFIKAIEDAVALGADVINLSLGTANGAQLSGSKPLMEAIEKAKKAGVSVVVAAGNER 383 + + I+ I A+ D+I++SLG L EA++KA + + V+ AAGNE Sbjct: 126 YDWI-IQGIYYAIEQKVDIISMSLGGP-----EDVPELHEAVKKAVASQILVMCAAGNEG 179 Query: 384 VYGSDHDDPLATNPDYGLVGSPSTGRTPTSVAAINSKWVI 423 D+ +G P SV AIN Sbjct: 180 DGDDRTDE----------LGYPGCYNEVISVGAINFDRHA 209 Score = 78.7 bits (194), Expect = 2e-17 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 18/147 (12%) Query: 561 FDSVVSKAPSQKGNEMNHFSNWGLTSDGYLKPDITAPGGDIYSTYNDNHYGSQTGTSMAS 620 ++ V+S + FSN + D+ APG DI ST Y + +GTSMA+ Sbjct: 194 YNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSMAT 247 Query: 621 PQIAGASLLVKQ-YLEKTQPNLPKEKIADIVKNLLMSNAQIHVNPETKTTTSPRQQGAGL 679 P +AGA L+KQ + +L + L+ SP+ +G GL Sbjct: 248 PHVAGALALIKQLANASFERDL----TEPELYAQLIKRT-------IPLGNSPKMEGNGL 296 Query: 680 LNIDGAVTSGLYVTGKDNYGSISLGNI 706 L + + G +S ++ Sbjct: 297 LYLTAVEELSRIFDTQRVAGILSTASL 323 Score = 40.6 bits (95), Expect = 4e-05 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 127 HDWVKTKGAWDKGYKGQGKVVAVIDTGIDPAHQS 160 + ++ W++ G+G VAV+DTG D H Sbjct: 26 VEMIQAPAVWNQTR-GRGVKVAVLDTGCDADHPD 58
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 38.5 bits (89), Expect = 2e-05 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 27/170 (15%) Query: 88 INTSLDKAKGELSQLTPELRDQVAQLDAATHRLVIPWNIVVYRYVYETFLRDIGVSHADL 147 IN L + G L+ PEL +V ++ A IP N++VYR G L Sbjct: 295 INNYL-ISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRS--------GPQEFGL 345 Query: 148 TSYYRNHQFDPHILCKIK---------LGTRYTKHSFMSTT--ALKNGAMTHRPVEVRIC 196 T + F+ KI+ G T +F+ST+ ++ A R + +RI Sbjct: 346 TLTSPEYDFN-----KIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRIN 400 Query: 197 VKKGAKAAFVEPYSAVPSEVELLFPRGCQLEV--VGAYVSQDQKKLHIEA 244 + K + A++ E E+L G + ++ V +Y KL ++A Sbjct: 401 IPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDA 450
>BACTRLTOXIN#Bacterial toxin signature. Length = 266 Score = 98.5 bits (245), Expect = 5e-27 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 20/216 (9%) Query: 35 LNYAYEIIPVDYTNC-NIDYLTTHDFYIDISSYKKKNF-SVDSEVESYITTKFTKNQKVN 92 + Y Y+ V T ++D HD +IS K KN+ V +E+ + K K++ V+ Sbjct: 51 MKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVD 110 Query: 93 IFGLPYIFTRYDVYY------------IYGGVTPSVNSNSENSKIVGNLLID--GVQQKT 138 ++G Y Y +YGG+T N ++ + N+L+ ++ T Sbjct: 111 VYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEG-NHFDNGNLQNVLVRVYENKRNT 169 Query: 139 LINPIKIDKPIFTIQEFDFKIRQYLMQTYKIYDPN-SPYIKGQLEIAINGNKHESFNLYD 197 + ++ DK T QE D K R +L+ +Y+ N SPY G ++ N +++ Sbjct: 170 ISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMP 229 Query: 198 ATSS-STRSDIFKKYKDNKTINMKDFSHFDIYLWTK 232 A +S Y DNKT++ K +++L TK Sbjct: 230 APGDKFDQSKYLMMYNDNKTVDSKS-VKIEVHLTTK 264
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 2e-27 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 24/252 (9%) Query: 6 KVVLVTGCASGIGYAQARYFLKQGHHVYGVDKSDKPDLSGNFHFIKLDLSSELAPL---- 61 K+ +TG A GIG A AR QG H+ VD + + +E P Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 62 -----------FKVVPSVDILCNTAGILDAYKPLLDVSDEEVEHLFDINFFATVKLTRHY 110 + + +DIL N AG+L + +SDEE E F +N +R Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 111 LRRMVEKQSGVIINMCSIASFIAGGGGVAYTSSKHALAGFTRQLALDYAKDQIHIFGIAP 170 + M++++SG I+ + S + + AY SSK A FT+ L L+ A+ I ++P Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 171 GAVKTAM-----TANDFEP---GGLADWVARETPIGRWTKPDEVAELTGFLASGKARSMQ 222 G+ +T M + G + P+ + KP ++A+ FL SG+A + Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 223 GEIVKIDGGWTL 234 + +DGG TL Sbjct: 248 MHNLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 1e-23 Identities = 29/133 (21%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 3 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62 IL+ DD+ I ++ L++ GYD+ + DL++ D+++P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VAKEIRKT-SHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 + I+K +P++++SA+++ + E GA DY+ KPF EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 IETAVAEENASSG 134 + + +++ Sbjct: 125 RPSKLEDDSQDGM 137
>PF06580#Sensor histidine kinase Length = 349 Score = 44.1 bits (104), Expect = 7e-07 Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 34/187 (18%) Query: 253 DETNRMMRMISDLL--NLSRIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVY 310 + M+ +S+L+ +L + + LA E+T +++ +F +++ ++ Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQF---EDRLQFENQIN 247 Query: 311 EIVRDYPITSVWIEIDNDKMTQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQG 370 + D + + ++ ++EN + + I P GGKI ++ + + + + + G Sbjct: 248 PAIMDVQVPPMLVQT-------LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 371 LGIPKTDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHHGF---IWAKSDYGKGS 427 K + TG GL +E ++ +G I GK Sbjct: 301 SLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV- 341 Query: 428 TFTIVLP 434 +++P Sbjct: 342 NAMVLIP 348
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.4 bits (112), Expect = 3e-07 Identities = 48/313 (15%), Positives = 94/313 (30%), Gaps = 10/313 (3%) Query: 209 AKVAKQFLELDANRKQLQLDILVKDIDIAQERQTKDTEALAALQQDLASYYAKRQSMEED 268 + VA + + Q + D + + + + + + AL+ + + +E Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 269 YQKFKQKKQVLSQESDQTQTTLLELTKLIADLEKQIELVKLESGQ---EAEKKAEAKKHL 325 +K + + + + + +L K + + E A K L Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 326 EQLQEQLDGFQAEEKQCTEQLLHIDQQLCDVKQQLNELSNALERFSSDPDQLMETLREEF 385 E+ E F + + L L + +L + FS+ ++TL E Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 386 VLLMQKEAALSNQLTALKAHLDKEKQARQHKAQEYQLLVTKLDQLNDESQKAQAHYKAQK 445 L ++A L L + + E L + +L + A A Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 280 Query: 446 EQVEMLLQNYQEGDKRVQELERDYQLNQERLFDLLDQ-------KKGKEARKASLESIQK 498 +++ L + +LE Q+ L KK EA LE K Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 499 SHSQFYAGVRAVL 511 +R L Sbjct: 341 ISEASRQSLRRDL 353 Score = 30.8 bits (69), Expect = 0.034 Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 18/243 (7%) Query: 169 KYKTRKKETQIKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLD 228 + + + LE L+ + A LEK + A F ++ Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTA----DSAKIK 284 Query: 229 ILVKDIDIAQERQTKDTEALAALQ-------QDLASYYAKRQSMEEDYQKFKQKKQVLSQ 281 L + + + L +DL + ++ +E ++QK +++ ++ Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 344 Query: 282 ESDQTQTTLLELTKLIADLEKQIELVKLESGQEAEKKAEAKKHLEQLQEQLDGFQAEEKQ 341 + L + LE + + ++ E+ ++ + L+ LD + +KQ Sbjct: 345 SRQSLRRDLDASREAKKQLEAEHQKLE-------EQNKISEASRQSLRRDLDASREAKKQ 397 Query: 342 CTEQLLHIDQQLCDVKQQLNELSNALERFSSDPDQLMETLREEFVLLMQKEAALSNQLTA 401 + L + +L +++ EL + + + +L L E L +K A + +L Sbjct: 398 VEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAK 457 Query: 402 LKA 404 L+A Sbjct: 458 LRA 460 Score = 30.4 bits (68), Expect = 0.044 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 8/163 (4%) Query: 676 ELEQISEELTRLVEQLKITEKEVAALQSDLIAKKEELTQLKLAGDQARLAEQRAQMAYQQ 735 LE L L+ + + AK + L K A E R + Sbjct: 145 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA------LEARQAELEKA 198 Query: 736 LQEKQEDSKALLAALDQSQTTHSDESLLAEQARIEEALTAIAKKKNALTCDIDDIKENKD 795 L+ S A A + + +L A +A +E+AL A + I ++ K Sbjct: 199 LEGAMNFSTADSAKIKTLE--AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 796 LIRQKTQNIHQALSQARLQERDLLNEKKFEQANQSRLRTQLKQ 838 + + + +AL A + K +A ++ L + Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 4e-05 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 52 SVIGVLFNLFGGVIADSFKR----KKIIITTNILCGTACLVLSFLTKEQWLVYAIVLTNV 107 + G+L +L +I ++ ++ I GT ++L+F T W+ + I+ V Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT-RGWMAFPIM---V 308 Query: 108 ILAFMSAFSSPSYKAFTKEIVKKDSISQLNSLLETTSTVIKVTVPMVAIFLYKLLGIHGV 167 +LA P+ +A V ++ QL L +++ + P++ +Y + Sbjct: 309 LLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA----ASI 363 Query: 168 LLLDGLSFLIAALLISFILPV 188 +G +++ A L LP Sbjct: 364 TTWNGWAWIAGAALYLLCLPA 384
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 26.0 bits (57), Expect = 0.043 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%) Query: 3 PLIQSLTEGQLR-SDIPNFRPGDTVRVHAKVVE-------GTRERIQIFEGVVISRKGQG 54 ++ + +L DI R GD +R+H V G R++ GVV + Sbjct: 260 DVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGKKIAAQ 319 Query: 55 ISE 57 I E Sbjct: 320 ILE 322
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 66.0 bits (161), Expect = 7e-15 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 2/160 (1%) Query: 5 LRPLLGNNILNSLPFKRILVSFSRLFISNLQVLLPDIHLFHYLRRQQKRNKSFYNTLKTI 64 + LL N + L+ FS+ F+ NLQ +P+ +LF + K N+ Y +LK I Sbjct: 332 IITLLPNLKEQKASLVKALMFFSKSFLFNLQHFIPETNLF--VSPYYKGNQKLYTSLKLI 389 Query: 65 VEEWMSAEGIVGKLPSYHLLLFTIQLEELLKTYLPPIPVYLLTNNTAALDLMTNALSIYF 124 VEEWM+ L H LF +E++L+ PP+ V + +N L+T++ YF Sbjct: 390 VEEWMAKLPGKRYLNHKHFHLFCHYVEQILRNIQPPLVVVFVASNFINAHLLTDSFPRYF 449 Query: 125 PPAIATVMPVNVEIIPFKDIVKEKQSVIIADRQYLNLIQH 164 + I K ++I Q + + H Sbjct: 450 SDKSIDFHSYYLLQDNVYQIPDLKPDLVITHSQLIPFVHH 489
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 204 bits (521), Expect = 3e-64 Identities = 92/290 (31%), Positives = 164/290 (56%), Gaps = 5/290 (1%) Query: 1 MLHLHLETKLQDKLSLLNILLDVSEVSIDQLCQETELKKQRVYNLLFEMIKDLEDTLTLT 60 ++ +LE+ ++ K L+ + S + I ++ ++T L ++ + E+ D+L++T Sbjct: 34 LIEKYLESSIESKCQLVVLFFKTSSLPITEVAEKTGLTFLQLNHYCEELNAFFPDSLSMT 93 Query: 61 ICDDTVSIPYKTYQLKMPYFKKLYQTSIFLKMLCFLIE--PGELSLHDFIKREYISQATA 118 I +S + T+ K Y +LY +S L++L FLI+ L DF + ++S ++A Sbjct: 94 IQKRMISCQF-THPSKETYLYQLYASSNVLQLLAFLIKNGSHSRPLTDFARSHFLSNSSA 152 Query: 119 YRIRTNCRKYLKKVGLNVRQNHVVGPEYRIRFLIALLHYQFGMTIYDFDKTSMNKVVSLI 178 YR+R L+ L + +N +VG EYRIR+LIALL+ +FG+ +YD + N + S + Sbjct: 153 YRMREALIPLLRNFELKLSKNKIVGEEYRIRYLIALLYSKFGIKVYDLTQQDKNIIHSFL 212 Query: 179 INSNQATTLNDASKAPYEFSYFAILISLIWKRRHDNLGIPQTDAFKHLKKLSIYRDIKMT 238 +S+ T L + FS++ IL++L WKR ++ IPQT F+ LKKL +Y +K + Sbjct: 213 SHSS--THLKTSPWLSESFSFYDILLALSWKRHQFSVTIPQTRIFQQLKKLFVYDSLKKS 270 Query: 239 SQEIIGKWYHPELTDEDLDYIFLCFCTTNNPFHKDKWTPKKVKELFELVM 288 S++II + + DLDY++L + T NN F +WTP+ +++ +L Sbjct: 271 SRDIIETYCQLNFSAGDLDYLYLIYITANNSFASLQWTPEHIRQCCQLFE 320
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.9 bits (70), Expect = 0.003 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 37 SYQDFLDVLLSLFQFVVIILVLFFYSATINLGEVLTFLTQTSWHWQILCYLVLYLMAIIE 96 S + ++ L S+ + V++ ++++ NL +L T L +L + +I Sbjct: 133 SIKSLVEFLKSILKVVLLSILIWII-IKGNLVTLLQLPTCGIECITPLLGQILRQLMVIC 191 Query: 97 MTLLVLILIFDVLLQK 112 V+I I D + Sbjct: 192 TVGFVVISIADYAFEY 207
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 5e-07 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 13/112 (11%) Query: 139 QQLQDLNDAYADAQAEVNKAQIALNDTVVISSVSGTVVE-----VNNDIDPSSKNSQTLV 193 +L+ D E+ K + +V+ + VS V + + ++TL+ Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT----AETLM 357 Query: 194 HVATEGQ-LQVKGTLTEYDLANVKVGQSVKIKSKVYSNQEW---TGKISYVS 241 + E L+V + D+ + VGQ+ IK + + + GK+ ++ Sbjct: 358 VIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Score = 37.1 bits (86), Expect = 1e-04 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 9/115 (7%) Query: 60 VKVGDQVTQGQQLVQYNTTTA-------QSAYDTAVRSLNKIGRQINHLKTYGVPAV--S 110 VK G+ V +G L++ A QS+ A + ++ +P + Sbjct: 112 VKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Query: 111 TETNRDEATGEETTTTVQPSAQQNANYKQQLQDLNDAYADAQAEVNKAQIALNDT 165 E + EE +Q + ++ Q +AE +N Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.4 bits (87), Expect = 1e-04 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 20/81 (24%) Query: 20 ADVLIDGKQIVKIASA-----------IECQEAQVIDASGLIVAPGLVDIHVHFREPGQT 68 AD+ + +I I A I +VI G IV G +D H+HF P Q Sbjct: 86 ADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFICPQQ- 144 Query: 69 HKEDIHTGALAAAAGGVTTVV 89 A G+T ++ Sbjct: 145 --------IEEALMSGLTCML 157
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 27.5 bits (61), Expect = 0.008 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Query: 7 RMILMFDMPTDTAEE-----RKAYRKFRKFLLSEGFIMHQFSIY 45 R + FD+ T + E+ R+ Y +KF+L GF Q+S Y Sbjct: 5 RKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGY 48
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 112 bits (282), Expect = 3e-28 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 12 KIRNFSIIAHIDHGKSTLADRILEK---TETVSSREMQAQLLDSMDLERERGITIKLNAI 68 KI N ++AH+D GK+TL + +L + S + D+ LER+RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 ELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLA 128 + E ++IDTPGH+DF EV RSL+ +GAIL++ A G++AQT + Sbjct: 62 SFQW-----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 129 LDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDA 164 + + INKID D V ++++ + + Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 152 Score = 93.0 bits (231), Expect = 7e-22 Identities = 44/214 (20%), Positives = 93/214 (43%), Gaps = 16/214 (7%) Query: 171 SAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGD 230 SAK IGI+ ++E I K + T + L +F Y R + +R+ +G++ D Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 231 KIQMMSNGKTFDVTEVGIFTP-KAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNP 289 +++ K +TE+ + D +G++ + + +GDT L Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQRE 337 Query: 290 AKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFE--PETSQALGFGF 347 E P++ + P + + L +AL ++ +D L++ T + + Sbjct: 338 RIENPL------PLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEII---- 387 Query: 348 RCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVY 381 FLG + M+V L+ ++++++ + P+V+Y Sbjct: 388 -LSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 43.3 bits (102), Expect = 2e-06 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%) Query: 393 VSNPSEFPDPTRVAFIE----------EPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMD 442 VS P++F + + EPY+ +I PQE++ + + + V Sbjct: 510 VSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ 569 Query: 443 YIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDMSEYR 486 + +N V + +IP I ++ L T G + ++ Y Sbjct: 570 -LKNNEVILSGEIPARCI-QEYRSDLTFFTNGRSVCLTELKGYH 611
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 65.9 bits (160), Expect = 3e-14 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 12/105 (11%) Query: 189 QPGKPAPKTPEVPQNPDTAPHTPKTPRIPGQSKDVTPAPQNPSNRGLNKPQTQGGNQLAK 248 + K A + ++ + TP P + +G NQ Sbjct: 447 KLAKQAEELAKLRAGKASDSQTPDAK----------PGNKAVPGKGQAPQAGTKPNQ--N 494 Query: 249 TPAAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN 293 +T RQLP+TGET NPFFTAAA+ +M TAGV AV KR+E N Sbjct: 495 KAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEEN 539
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-17 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 3 KILAIDDDKEILKLMKTALEIENYHVITCQEIELPIVFDDFKGYDLILLDIMMPNISGTE 62 IL DDD I ++ AL Y V + DL++ D++MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 FCYKIREE-VHSPIIFVSALDGDNEIVQALNIGGDDFIVKPFSLKQFVAKVNSHLKREER 121 +I++ P++ +SA + ++A G D++ KPF L + + + L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 AKIKNEAEER 131 K E + + Sbjct: 125 RPSKLEDDSQ 134
>NISIN#Nisin signature. Length = 57 Score = 26.7 bits (58), Expect = 0.001 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%) Query: 4 TIKDFDLDL-KTNKKDT-ATPYVGSRYLCTPG 33 + KDF+LDL +KKD+ A+P + S LCTPG Sbjct: 2 STKDFNLDLVSVSKKDSGASPRITSISLCTPG 33
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.003 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 7/47 (14%) Query: 184 NKWYLFPYDWSLKLLEPMTRMRINSIPFGAEFVPDYSQIFISLFLGI 230 NK Y+ +W+ +P+T+ +IN+IP AEF+ + S I S +G+ Sbjct: 639 NKAYI---EWT----DPITKAKINTIPTSAEFIKNLSSIRRSSNVGV 678
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 36.6 bits (84), Expect = 1e-04 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 31 SGSQSDKLVIYNWGDYIDPALLKKFTKETGIEVQYETFDSNEAMYTKIKQGGTTYDIAVP 90 S S V+ N+ YI P LL++ + + + T+ SNE + TY +AV Sbjct: 21 SSCGSTTFVLANFESYISPLLLER--VQEKHPLTFLTYPSNEKLINGF--ANNTYSVAVA 76 Query: 91 SDYTIDKMIKENLLNKLDKSKL 112 S Y + ++I+ +LL+ +D S+ Sbjct: 77 STYAVSELIERDLLSPIDWSQF 98
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 66.8 bits (163), Expect = 5e-15 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 3 VLIIEDDPMVDFIHRNYLEKLNLFDRIISSDSMKAVQSILTDYAIDLILLDIHITDGNGI 62 +L+ +DD + + L + + + + + + DL++ D+ + D N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 QFLEKWRTQHIPCEVIIISAANDGNIIRDGFHLGIIDYLIKPFTFERFQESIQQFVTHRE 122 L + + V+++SA N G DYL KPF I + + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 HLANQQLEQAQ 133 ++ + +Q Sbjct: 124 RRPSKLEDDSQ 134
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 32.0 bits (73), Expect = 0.002 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 8/75 (10%) Query: 172 TIGILERIVIGVCMIMG---QFASIGLVFTAKSIA-RYNKISESPAFAEYYLIGSLF--- 224 L ++ V +M G + + ++I KI+ + I SL Sbjct: 82 EFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFL 141 Query: 225 -SILSVFIAAWICFF 238 SIL V + + + + Sbjct: 142 KSILKVVLLSILIWI 156
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 26.7 bits (59), Expect = 0.024 Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 87 EILAPADGLVSKIHVVANQTVESEQVLI 114 EI + +V +I V ++V VL+ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLL 125 Score = 26.3 bits (58), Expect = 0.029 Identities = 13/40 (32%), Positives = 22/40 (55%) Query: 51 VKAPMSGTVLSIFATEGKAVKKGEAVLVLEAMKMENEILA 90 +K + V I EG++V+KG+ +L L A+ E + L Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLK 138 Score = 25.9 bits (57), Expect = 0.038 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 17 LRELVDGETVEVSQPAAPATEKEMNANAAGGGIQVKAPMSGTV--LSIFATEGKAVKKGE 74 + + + + + T + ++AP+S V L + TEG V E Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVH-TEGGVVTTAE 354 Query: 75 AVLVL 79 ++V+ Sbjct: 355 TLMVI 359
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.004 Identities = 10/49 (20%), Positives = 22/49 (44%) Query: 65 AIPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTITA 113 I + +++V G+ V + LL L A+ E + + + + + A Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Score = 26.7 bits (59), Expect = 0.030 Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 102 EIVASSAGTITAIHVGPGQVVNPGDGLITI 131 EI + I V G+ V GD L+ + Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKL 127
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 65.8 bits (160), Expect = 4e-14 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 45/299 (15%) Query: 36 DLKVAMVTDTGGVDDKSFNQSAWEGLQSWGKEMGLQKGTGFDYFQSTSESEYATNLDTAV 95 LK ++TD G +DDKSFNQSA+E L++ + K TG + S + + ++A+ Sbjct: 61 KLKPVLITDEGKIDDKSFNQSAFEALKA------INKQTGIEINNVEPSSNFESAYNSAL 114 Query: 96 SGGYQLIYGIGFALKDAIAKAAGD------NEGVKFVIIDDIIEGKDNV-ASVTFADHEA 148 S G+++ GF + +I + +K + ID IE + S+ F E+ Sbjct: 115 SAGHKIWVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFNIKES 174 Query: 149 AYLAGIAAAKTTKTK-----TVGFVGGMEGTVITRFEKGFEAGVKS---------VDDTI 194 A+ G A A + V GG +T F +GF G+ + T Sbjct: 175 AFTTGYAIASWLSEQDESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSSKIYHTS 234 Query: 195 QVKVDYAGSFGDAAKGKTIAAAQYAAGADVIYQAAGG---TGAGVFNEAKAINEKRSEAD 251 VK+D +G I + ADV Y G F + N+ + Sbjct: 235 PVKLD-SGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLANKGQ---- 289 Query: 252 KVWVIGVDRDQKDEGKYTSKDGKEANFVLASSIKEVGKAVQLINKQVADKKFPGGKTTV 310 +VIGVD DQ +D +L S +K + +AV + +K G K V Sbjct: 290 --YVIGVDSDQG-----MIQDKDR---ILTSVLKHIKQAVYETLLDLILEKEEGYKPYV 338
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 2e-05 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 312 YGKIFYFQNQVNRSLRMDKALLKQLITILFDNAIKY----TDKNGIIEIIVKTTDKNLLI 367 + F+NQ+N ++ D + L+ L +N IK+ + G I + + + + Sbjct: 236 FEDRLQFENQINPAIM-DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 368 SVIDNGPGITDEEKK 382 V + G K+ Sbjct: 295 EVENTGSLALKNTKE 309
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.5 bits (76), Expect = 6e-04 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 32 KGELVVIL-GASGAGKSTVLNILGGMD-TVDAGQVIIDGKD 70 K + V+L G G GKST++N L G+D D I GKD Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.2 bits (96), Expect = 6e-07 Identities = 13/48 (27%), Positives = 25/48 (52%) Query: 4 RHTETKAYVKTALTTLLTEQSFETLTVSDLTKKAGINRGTFYLHYTDK 51 ET+ ++ L ++Q + ++ ++ K AG+ RG Y H+ DK Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55
>BACTRLTOXIN#Bacterial toxin signature. Length = 266 Score = 276 bits (706), Expect = 7e-96 Identities = 114/257 (44%), Positives = 160/257 (62%), Gaps = 19/257 (7%) Query: 11 MVFFVLVTFLGLTISQEVFA--QQDPDPSQLHRSS-LVKNLQNIYFLYEGDPVTHENVKS 67 ++ F L+ + + V A Q DP P LH+SS + N+ +LY+ V+ VKS Sbjct: 11 ILIFALIL---VISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKS 67 Query: 68 VDQLLSHDLIYNVSGP---NYDKLKTELKNQEMATLFKDKNVDIYSVEYYHLCYLCE--- 121 VD+ L+HDLIYN+S NYDK+KTEL N+++A +KD+ VD+Y YY CY Sbjct: 68 VDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDN 127 Query: 122 ---NAERSACIYGGVTNHEGNHLEIP--KKIVVKVSIDGIQSLSFDIETNKKMVTAQELD 176 C+YGG+T HEGNH + + ++V+V + ++SF+++T+KK VTAQELD Sbjct: 128 VGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELD 187 Query: 177 YKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEP--EFTQSKYLMIYKDN 234 K R +L + K LY S YETGYIKFI N +FW+D P P +F QSKYLM+Y DN Sbjct: 188 IKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDN 247 Query: 235 ETLDSNTSQIEVYLTTK 251 +T+DS + +IEV+LTTK Sbjct: 248 KTVDSKSVKIEVHLTTK 264
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 27.8 bits (62), Expect = 0.009 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 46 VARNAVEAVEQIAYDKDIK---GIEKLTEAKIAVRDELSKHNVYLSDK--QMEV 94 ++V V Q + D + G+ K A R + K ++ + +EV Sbjct: 486 RTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEV 539
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 28.5 bits (63), Expect = 0.006 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 40 VSAPVKHVLDNNKKAMEALESAIVKISDD-----LKDNNFKWTESKNHRDRLQKVQDQHE 94 + APV +D + L + + +SD LKDN F + R + D Sbjct: 38 IDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNEN 97 Query: 95 IRI 97 +R+ Sbjct: 98 VRL 100
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 25.9 bits (57), Expect = 0.007 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 14/41 (34%) Query: 25 EFGWITLEDVPKKYR--------------DKVKQLVESGNI 51 E GWI ED + +R + +K+LVE G I Sbjct: 148 EKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVI 188
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 37.0 bits (85), Expect = 3e-04 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Query: 294 VFSQLYLESFWGDTPVGRAD----NNWGGI----TWTGATTRPSGINVSQGQSRAEGGYY 345 + +Q LES WG + R + N G+ W G T + G+++ + Sbjct: 174 ILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKF 233 Query: 346 NHYASVDDYLKDYAYLLAEQGIY-AVKGKLTIDEYTRGLFRVGGATYDYAAAGYDHYAPL 404 Y+S + L DY LL Y AV + ++ + L G AT + A + Sbjct: 234 RVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMIQQ 293 Query: 405 MRDIRAGINRNNNGAMDNV 423 M+ I +++ + +DN+ Sbjct: 294 MKSISDKVSKTYSMNIDNL 312
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 27.7 bits (61), Expect = 0.031 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 8 EQSGAQEEAKEQTFDDILSDPKKQAEFDKRVAKAIDTARN-KWVAETEEKENEAK----- 61 E + E ++ ++ ++ + E + ++ +T T EKE +AK Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQ-TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 62 --RLAKMNAEQKAQHEKAKLEARIAELEAER 90 + K+ ++ + E+++ AE E Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149
>PF06580#Sensor histidine kinase Length = 349 Score = 26.0 bits (57), Expect = 0.021 Identities = 7/45 (15%), Positives = 19/45 (42%) Query: 29 LFLAIAIFGMMVTVSYFSYRDARQYYESQITGLRTQLSRTQKQLK 73 + + + M ++ YF + + Y +++I + + QL Sbjct: 120 IIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLM 164
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 27.4 bits (60), Expect = 0.029 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 71 QAEAKVEKYKETIRRAMELSQKKKVDAGMFKVSLRKSKKVEILDETKIPLDYMQEKIEYK 130 + A E Y E+ + ++K K + FK S+ K E +ET + Q+ ++ Sbjct: 30 EVNAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKI 89 Query: 131 PMKS-EISKALKSGIDISGVELIETESLQ 158 P EI L I + ++L+E + LQ Sbjct: 90 PKDVLEIYSELGGEIYFTDIDLVEHKELQ 118
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 92.1 bits (228), Expect = 4e-23 Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 8/125 (6%) Query: 23 SLTAAQTILESGWGKHA-------PHNALFGIKADSSWTGKSFDTKTQEEYQAGVVTDIV 75 L AQ LESGWG+ P LFG+KA +W G + T E Y+ G + Sbjct: 172 HLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE-YENGEAKKVK 230 Query: 76 DRFRAYDSWTDSIIDHGKFLNDNPRYQAVIGETDYKKACHAIKDAGYATASGYAELLIQL 135 +FR Y S+ +++ D+ L NPRY AV ++ A++DAGYAT YA L + Sbjct: 231 AKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNM 290 Query: 136 IEEND 140 I++ Sbjct: 291 IQQMK 295
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.5 bits (61), Expect = 0.027 Identities = 8/24 (33%), Positives = 15/24 (62%) Query: 147 GELAKILKQNGINIGQNKLFQWLR 170 EL ILK++G N+ Q + + ++ Sbjct: 23 DELVDILKKDGYNVTQATVSRDIK 46
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 151 bits (383), Expect = 1e-49 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 4/154 (2%) Query: 19 KKEASKNEKT--KAVLNQAVADLSVAASIVHQVHWYMRGPGFLYLHPKMDELLDSLNANL 76 K E +K +T + LN +++ + S +H+ HWY++GP F LH K +EL D + Sbjct: 2 KTENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETV 61 Query: 77 DEMSERLITIGGAPYSTLAEFSKHSKLDEAKGTYDKTVAQHLARLVEVYLYLSSLYQVGL 136 D ++ERL+ IGG P +T+ E+++H+ + + + + ++ + LV Y +SS + + Sbjct: 62 DTIAERLLAIGGQPVATVKEYTEHASITDGGN--ETSASEMVQALVNDYKQISSESKFVI 119 Query: 137 DITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERG 170 + +E D T DLF E EK +WML + G Sbjct: 120 GLAEENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.2 bits (68), Expect = 0.005 Identities = 42/160 (26%), Positives = 58/160 (36%), Gaps = 25/160 (15%) Query: 70 GLIIILWASMVHWVSASYCYLLLFSLLFSLF--DWRSQ------EYPFILWLFSFVSLLL 121 L+ + A + + LLL +L +L D P + F L Sbjct: 118 ALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGG 177 Query: 122 FYSIN---------YLSLILLLLGLLAHLRPFSIGAGDFFYLASLALVLDLTSLIWLIQL 172 F S+ YL L L +G GDF LA+L L +L ++ L Sbjct: 178 FVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLL 237 Query: 173 ASLAGITACLLL-------GIKRIPFIPYLSFGLFWIVLL 205 +SL G + L K IPF PYL+ WI LL Sbjct: 238 SSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIA-GWIALL 276
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 33.8 bits (77), Expect = 2e-05 Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 8 KLILQGGKAMVTIKQVAEEAGVSRSTVSRYISQK 41 +L Q G + ++ ++A+ AGV+R + + K Sbjct: 22 RLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 153 bits (388), Expect = 2e-50 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 2/157 (1%) Query: 5 IGLYTGSFDPVTNGHLDIVKRASGLFDQIYVGIFDNPTKKSYFKLEVRKAMLTQALADFT 64 +Y GSFDP+T GHLDI++R LFDQ+YV + NP K+ F ++ R + +A+A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 65 NVIVVTSHERLAIDVAKELRVTHLIRGLRNATDFEYEENLEYFNHLLAPNIETVYLISRN 124 N V + E L ++ A++ + ++RGLR +DFE E + N LA ++ETV+L + Sbjct: 62 NAQVDSF-EGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 125 KWQALSSSRVRELIHFQSSLEGLVPQSVIAQV-EKMN 160 ++ LSSS V+E+ F ++E VP V A + ++ + Sbjct: 121 EYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQFH 157
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 405 bits (1043), Expect = e-145 Identities = 141/315 (44%), Positives = 204/315 (64%), Gaps = 6/315 (1%) Query: 3 KQKIVVALGGNAIL--STDASAKAQQEALISTSKSLVKLIKEGHEVIVTHGNGPQVGNLL 60 +++V+ALGGNA+ S + + + T++ + ++I G+EV++THGNGPQVG+LL Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 61 LQQAAADSEKN-PAMPLDTCVAMTEGSIGFWLVNALDNELQAQGIQKEVAAVVTQVIVDA 119 L A + PA P+D AM++G IG+ + AL NEL+ +G++K+V ++TQ IVD Sbjct: 62 LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121 Query: 120 KDPAFENPTKPIGPFLTEEDAKKQMAESGASFKEDAGRGWRKVVPSPKPVGIKEANVIRS 179 DPAF+NPTKP+GPF EE AK+ E G KED+GRGWR+VVPSP P G EA I+ Sbjct: 122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKK 181 Query: 180 LVDSGVVVVSAGGGGVPVVEDATSKTLTGVEAVIDKDFASQTLSELVDADLFIVLTGVDN 239 LV+ GV+V+++GGGGVPV+ + + GVEAVIDKD A + L+E V+AD+F++LT V+ Sbjct: 182 LVERGVIVIASGGGGVPVILED--GEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 239 Query: 240 VYVNFNKPDQAKLEEVTVSQMKEYITQDQFAPGSMLPKVEAAIAFVENKPNAKAIITSLE 299 + + + L EV V ++++Y + F GSM PKV AAI F+E +AII LE Sbjct: 240 AALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLE 298 Query: 300 NIDNVLSANAGTQII 314 L GTQ++ Sbjct: 299 KAVEALEGKTGTQVL 313
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.8 bits (80), Expect = 0.001 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Query: 724 YLPLADLLNVEEELARLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQ 783 + +L E + EL ++ +L+ + ++ +AK E + + + Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI------LSAKEEYQLVTQLFKNEIL 301 Query: 784 AKYDATQERIAEM 796 K T + I + Sbjct: 302 DKLRQTTDNIGLL 314
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 2e-19 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 10/170 (5%) Query: 3 KVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPGMT 62 +L+ DD+ I L + G++V + ++ D++++DV MP Sbjct: 5 TILVADDDAAIRTVLNQAL--SRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQAKMKQFKDW 122 DL+ K P L L++S F KA E YL KP D EL + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 123 LDAQQAESIRQEAYHDSLLTLWLTDELSEKEFQQLSQGLPAAALTGFTVL 172 + ++ L+ Q++ + L T T++ Sbjct: 122 PKRRPSKLEDDSQDGMPLVG-------RSAAMQEIYRVLARLMQTDLTLM 164
>PF06580#Sensor histidine kinase Length = 349 Score = 181 bits (462), Expect = 2e-54 Identities = 70/324 (21%), Positives = 133/324 (41%), Gaps = 34/324 (10%) Query: 250 LSKAYRMQYNRSGDLLAYVAVRKSYLLAEAVRTVFVYGLVSLLLAWLLLQLL-FRVFRNY 308 L+ AYR R G L + + A + + V+ W LL + + Sbjct: 55 LTHAYRSFIKRQG-WLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFT 113 Query: 309 IQQVSEITDTVEMVAAGDLSLTIDNSHMELELYHISEAINQMLASIKAYIDEVYVLEVEQ 368 + I V +V + M LY + +A ID+ + Sbjct: 114 LPLALSIIFNVVVV-----------TFMWSLLYF---GWHFFKNYKQAEIDQWK-MASMA 158 Query: 369 RDAQMRALQSQINPHFLYNTLEYIRMYALSCQQEELADVIYAFASLLRNNI--SQDKMTT 426 ++AQ+ AL++QINPHF++N L IR L + +++ + + L+R ++ S + + Sbjct: 159 QEAQLMALKAQINPHFMFNALNNIRALILE-DPTKAREMLTSLSELMRYSLRYSNARQVS 217 Query: 427 LKEELAFCEKYIYLYQMRYPDSFAYHVKIDESVADLAIPKFVIQPLVENYFVHGIDYSRH 486 L +EL + Y+ L +++ D + +I+ ++ D+ +P ++Q LVEN HGI Sbjct: 218 LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQ 277 Query: 487 DNALSIKALDETDYLLIQVLDNGRGISQERLADMEKRLQEHQTTGNSSIGLQNVYLRLFH 546 + +K + + ++V + G L T ++ GLQNV RL Sbjct: 278 GGKILLKGTKDNGTVTLEVENTG-------------SLALKNTKESTGTGLQNVRERLQM 324 Query: 547 HFRDRVSWSMAKEPNGGFIIQIRI 570 + ++++ G + I Sbjct: 325 LYGTEAQIKLSEKQ-GKVNAMVLI 347
>PF03309#Bvg accessory factor Length = 271 Score = 29.7 bits (67), Expect = 0.013 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 3 LLCIDIGGTSLKFALCHN----GQLSQQSSFPT--PSSLEKFYQLLDQEVARYSAYHFSG 56 LL ID+ T L ++ QQ T + ++ +D + A +G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTEPEVTADELALTIDG-LIGDDAERLTG 60 Query: 57 IAISS 61 + S Sbjct: 61 ASGLS 65
>PF05043#Transcriptional activator Length = 493 Score = 54.9 bits (132), Expect = 4e-10 Identities = 30/162 (18%), Positives = 71/162 (43%), Gaps = 7/162 (4%) Query: 3 IEDLMDKERRAQYRLLVTLYHAKETLRLKDLMRLSNLSKVTLLKYIDNLNHLCREQGLAC 62 + DL+ K+ Q LL L+ K +L L N ++ + + ++ + Sbjct: 1 MRDLLSKKSHRQLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIF-- 58 Query: 63 QLLLEKDSLSLKENGQFHWEDLVALLLKESVAYQILTYMYCHEHFNITNLSVELMVSEAT 122 + + E + K S + IL +++ +E ++ E +S ++ Sbjct: 59 -HSSTNGIRIINTDDS-DIEMVYHHFFKHSTHFSILEFIFFNEGCQAESICKEFYISSSS 116 Query: 123 LNRQLAHLNQLLS---EFDLALSQGRQLGSELQWRYFYFELF 161 L R ++ +N+++ +F+++L+ + +G+E RYF+ + F Sbjct: 117 LYRIISQINKVIKRQFQFEVSLTPVQIIGNERDIRYFFAQYF 158
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 39.2 bits (91), Expect = 2e-06 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 49 NQPKTSQTSKKVKLSEDKAKSIALKDASVTEADAQMLSVTQDNEDGKAVYEIEFQNKDQE 108 + S ++ +D A + + + E L + D E + YE+ + Sbjct: 134 TEAAISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNVRFLTPV 193 Query: 109 ---YSYTIDANSGDIVEK 123 + Y IDA G ++ K Sbjct: 194 PGNWIYMIDAADGKVLNK 211
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.9 bits (98), Expect = 3e-07 Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 19 KETRRIARESMEIALLNLLETKPLGDITISELVTKAGVSRNAFYRNYTSKEAIIEQLLVG 78 K+ + R+ + L L + + ++ E+ AGV+R A Y ++ K + ++ Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 79 VIRRI 83 I Sbjct: 66 SESNI 70
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 81.8 bits (202), Expect = 5e-18 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 18/139 (12%) Query: 461 IMGHVDHGKTTLLDTLRNSRVATGEAG------------------GITQHIGAYQIEEAG 502 ++ HVD GKTTL ++L + A E G GIT G + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 503 KKITFLDTPGHAAFTSMRARGASVTDITILIVAADDGVMPQTIEAINHSKAAGVPIIVAI 562 K+ +DTPGH F + R SV D IL+++A DGV QT + + G+P I I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 563 NKIDKPGANPERVIAELAE 581 NKID+ G + V ++ E Sbjct: 128 NKIDQNGIDLSTVYQDIKE 146
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 92.5 bits (229), Expect = 4e-23 Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 8/125 (6%) Query: 23 SLTAAQAILESGWGKHA-------PHNALFGIKADASWTGKSFNTKTQEEYQPGIVTDIV 75 L AQA LESGWG+ P LFG+KA +W G T E Y+ G + Sbjct: 172 HLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE-YENGEAKKVK 230 Query: 76 DRFRAYDSWTDSIIDHGKFLNDNPRYQSVVGETDYKKACHAIKDAGYATASGYAELLIQL 135 +FR Y S+ +++ D+ L NPRY +V ++ A++DAGYAT YA L + Sbjct: 231 AKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNM 290 Query: 136 IEEND 140 I++ Sbjct: 291 IQQMK 295
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 44.3 bits (104), Expect = 4e-07 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 16/99 (16%) Query: 3 LEERIPIKVLFDRKDAAEWQKLNPVVDDGELVVELDTHRLKVGDGKLNYNDLPYYEGPQG 62 + E IP++V F R A EW + + ++ + E+ E DT K GDGK ++ L Y P Sbjct: 1 MTETIPLRVQFKRMTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYLNKP-- 58 Query: 63 ESITKVQLSENGDLSVWIGDKET--KLGNIKGQKGDKGT 99 DL + +ET K+ ++ K DK Sbjct: 59 ------------DLGAFAQKEETNSKITKLESSKADKNA 85
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 29.3 bits (65), Expect = 0.036 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 123 TSDVVILADGVIEIIDLKYGKGMPVSANQNPQMGLYALGAYASYDMV--YDFDRIKMTII 180 + + ++ D +E+I+ ANQ + + G + D Y FD K + Sbjct: 850 SKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDYSDKYYFDVAKKGNV 909 Query: 181 QPRLDSVSSVDI 192 + L++++SV I Sbjct: 910 KITLNNLNSVGI 921
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 61.9 bits (150), Expect = 1e-14 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 62 CLLARLDEKVVGLLNLSGEVLSQGQAEADVFMLVAKTYRGYGIGQLLLEIALDWAEENPY 121 L L+ +G + + E + VAK YR G+G LL A++WA+EN + Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIED---IAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 122 IESLKLDVQVRNTKAIYLYKKYGFRI 147 L L+ Q N A + Y K+ F I Sbjct: 124 C-GLMLETQDINISACHFYAKHHFII 148
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 32.0 bits (73), Expect = 0.005 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 8/123 (6%) Query: 372 LTAVSTAVCFLLSILLLPLVGIVPAAATAPALIIVGVMMVSSFLDVNWSKF--ADALPAF 429 L+ V V L PL+ + A A ++ G ++ + + K + Sbjct: 72 LSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRI 131 Query: 430 FAA-FFMALCYSISYGIAAAFIFYCLVK-----VVEGKTKDIHPIIWGATFLFIVNFIIL 483 F+ + SI + + + + ++K +++ T I I + +I Sbjct: 132 FSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVIC 191 Query: 484 TIL 486 T+ Sbjct: 192 TVG 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 3e-08 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 2 KILLIDDHRLFAKSIQLLFQQYD-EVDVIDTITSHFNDVTIDLSKYDIILLDINLANISK 60 IL+ DD + + +V + + + + D+++ D+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI--AAGDGDLVVTDVVMP---D 59 Query: 61 ENGLEIAKELIQSTPHLKVVMLTGYVKSIYRERAKKVGAYGFVDKNIDPKQLISILKK 118 EN ++ + ++ P L V++++ + +A + GAY ++ K D +LI I+ + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.8 bits (67), Expect = 0.006 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Query: 1 MKKKERHEKILDILKVDGFIKVKDIIDEM-----NISDMTARRDLDTLADKGLL-IRTHG 54 M K +RH KI +I+ + +++D + N++ T RD+ L L+ + T+ Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKEL---HLVKVPTNN 57 Query: 55 GAQYLDYSSAKDEGHEKTHTEKKVL 79 G+ YS D+ K+ L Sbjct: 58 GSYK--YSLPADQRFNPLSKLKRSL 80
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 29.5 bits (66), Expect = 0.009 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 227 INGYKVTSWNDLTEAV-DLATRD-LGPSQTIKVTYKSHQRLKTV 268 + ++ L E + DL +D + +Q+LK + Sbjct: 80 FDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDL 123
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 6e-04 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDISEGELKIGGEVVNDKSPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ S+ IG +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAY 645
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 7e-04 Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 229 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKF 258 AL + GN ++ A L ++RN+L+ K+ + Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 815 bits (2106), Expect = 0.0 Identities = 389/440 (88%), Positives = 410/440 (93%) Query: 1 MKNYLSIGVIALLFALTFGTVKSVQAIAGYGWLPDRPPINNSQLVVSMAGIVEGTDKKVF 60 MKNYLS G+ ALLFALTFGTV SVQAIAG WL DRP +NNSQLVVS+AG VEGT++ + Sbjct: 1 MKNYLSFGMFALLFALTFGTVNSVQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQDIS 60 Query: 61 INFFEIDLTSQPAHGGKTEQGLSPKSKPFATDNGAMPHKLEKADLLKAIQKQLIANVHSN 120 + FFEIDLTS+PAHGGKTEQGLSPKSKPFATD+GAM HKLEKADLLKAIQ+QLIANVHSN Sbjct: 61 LKFFEIDLTSRPAHGGKTEQGLSPKSKPFATDSGAMSHKLEKADLLKAIQEQLIANVHSN 120 Query: 121 DGYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLKGHVRVRPYKEKPVQNQ 180 D YFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLL GHVRVRPYKEKP+QNQ Sbjct: 121 DDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPIQNQ 180 Query: 181 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPGY 240 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNK HPGY Sbjct: 181 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGY 240 Query: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYHVKNREQAYEINPKTGIKEKTNNTDLVSEKY 300 TIYERDSSIVTHDNDIFRTILPMDQEFTY VKNREQAY IN K+G+ E+ NNTDL+SEKY Sbjct: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYRVKNREQAYRINKKSGLNEEINNTDLISEKY 300 Query: 301 YVLKQGEKPYDPFDRSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360 YVLK+GEKPYDPFDRSHLKLFTIKYVDV+TNELLKSEQLLTASERNLDFRDLYDPRDKAK Sbjct: 301 YVLKKGEKPYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360 Query: 361 LLYNNLDAFDIMDYTLTGKVEDNHDKNNRVVTVYMGKRPKGAKGSYHLAYDKDLYTEEER 420 LLYNNLDAF IMDYTLTGKVEDNHD NR++TVYMGKRP+G SYHLAYDKD YTEEER Sbjct: 361 LLYNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEER 420 Query: 421 KAYSYLRDTGTPIPDNPKDK 440 + YSYLR TGTPIPDNP DK Sbjct: 421 EVYSYLRYTGTPIPDNPNDK 440
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 62.0 bits (150), Expect = 9e-16 Identities = 30/47 (63%), Positives = 34/47 (72%) Query: 1 MAKTPVANNHRRLPATGEQANPFFTAAAVAVMTTAGVLAVTKRKENN 47 K P+ R+LP+TGE ANPFFTAAA+ VM TAGV AV KRKE N Sbjct: 493 QNKAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEEN 539
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 51.6 bits (123), Expect = 3e-09 Identities = 50/294 (17%), Positives = 100/294 (34%), Gaps = 27/294 (9%) Query: 44 ISLTQKTTATTSENWHHIDKDGLIPLGISLEAAKEEFKKEVEESRLSEAQKETYKQKIKT 103 I + + +E +D+ + P + + E E + +K T Sbjct: 1003 IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETT 1062 Query: 104 APDKDKLLFTYHSEYMTAVKDLPASTESTTQPVEA-PVQETQASASDSMVTGDSTSVTTD 162 A +++ E + VK + E E Q T+ + ++ + V T+ Sbjct: 1063 AQNREVA-----KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 163 SPEETPSSESPVAPALSEA-----PAQPAESEEPSVAA----SSEETPSPSTPAAPSTPA 213 +E P S V+P ++ A+PA +P+V S T + + A T + Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177 Query: 214 APETPEEPAAPS----QPAESEESSVAATTSPS--------PSTPAESETQTPPAVTKDS 261 E P + E+ E++ ATT P+ P ++ P + + Sbjct: 1178 NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Query: 262 DKPSSAAEKPAASSLVSEQTVQQPTSKRSSDKKEEQEQSYSPNRSLSRQVRAHE 315 S+ A L S T + R+ + + ++ +S+ +E Sbjct: 1238 TTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNE 1291 Score = 37.7 bits (87), Expect = 7e-05 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 5/127 (3%) Query: 174 VAPALSEAPAQPAESEEPSVAASSEETPSPSTPAAPSTPAAPETPEEPAAPSQPAESEES 233 + +++ PSV +++EE P P P P+ ++ Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDE-----APVPPPAPATPSETTETVAENSK 1045 Query: 234 SVAATTSPSPSTPAESETQTPPAVTKDSDKPSSAAEKPAASSLVSEQTVQQPTSKRSSDK 293 + T + E+ Q + + + + SE Q T + + Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105 Query: 294 KEEQEQS 300 E++E++ Sbjct: 1106 VEKEEKA 1112 Score = 30.8 bits (69), Expect = 0.010 Identities = 44/204 (21%), Positives = 73/204 (35%), Gaps = 22/204 (10%) Query: 130 ESTTQPVEAPVQETQASASDSMVTGDSTSVTTDSPEETPSSESPVAPALSEAPAQPAESE 189 E Q V+ T + D SV +++ E E+PV P Sbjct: 986 EKRNQTVDTTNITTPNNIQ-----ADVPSVPSNNEEIARVDEAPVPPPA---------PA 1031 Query: 190 EPSVAASSEETPSPSTPAAPSTPAAPETPEEPAAPS-QPAESEESSVAATTSPSPSTPAE 248 PS ++E S + + + E A + + A+ +S+V A T + + Sbjct: 1032 TPS--ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 249 SET-QTPPAVTKDSDKPSSAAEKPAASSLVSEQTVQQPTSKRS--SDKKEEQEQSYSPNR 305 SET +T TK + + E+ A Q V + TS+ S ++ E + P R Sbjct: 1090 SETKETQTTETK--ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 306 SLSRQVRAHESGKYLPSTGEKAQP 329 V E +T + QP Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQP 1171
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 106 bits (266), Expect = 6e-27 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 47/226 (20%) Query: 117 KAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVA 176 +G G VAV+D G D +H DL KA+ G + + Sbjct: 36 NQTRGRGVKVAVLDTGCDADHP----------------DL-KARIIGGRNFTDDDEGDPE 78 Query: 177 YYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLA 236 + DY+ HGTHV+G ++ + G PEA LL+++V G Sbjct: 79 IFKDYNG---------HGTHVAGTIAATENE-----NGVVGVAPEADLLIIKVLNKQGSG 124 Query: 237 DYARNYAQAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGND 296 Y Q I A+ +I+MS G E +A A + + ++ +AGN+ Sbjct: 125 QYD-WIIQGIYYAIEQKVDIISMSLGGPED-----VPELHEAVKKAVASQILVMCAAGNE 178 Query: 297 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAT 342 +T +G P + ++V + + D+ +E + Sbjct: 179 GDGDDRT----------DELGYPGCYNEVISVGAINFDRHASEFSN 214 Score = 79.9 bits (197), Expect = 5e-18 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 22/139 (15%) Query: 457 NATPKVLPTASGTK---LSRFSSWGLTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSM 513 +V+ + S FS+ + D+ APG+DILS+V KYA SGTSM Sbjct: 192 GCYNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSM 245 Query: 514 SAPLVAGIMGL-LQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGA 572 + P VAG + L Q + D+T E L+ L + SP+ +G Sbjct: 246 ATPHVAGALALIKQLANASFERDLTEPE----LYAQLIKRTIPLGN-------SPKMEGN 294 Query: 573 GAVDAKKASA-ATMYVTDK 590 G + + ++ T + Sbjct: 295 GLLYLTAVEELSRIFDTQR 313
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 182 bits (463), Expect = 1e-53 Identities = 246/450 (54%), Positives = 281/450 (62%), Gaps = 32/450 (7%) Query: 35 NQTEVKANGDGNPREVIEDLAANNPAIQNIRLRHENKDLKARLENAMEVAGRDFKRAEEL 94 KA + + L DL+ LE AM + D + + L Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 95 EKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRD 154 E K ALE ++ +LE L+ K + LE + Sbjct: 182 EAEKAALEARQAELEKALEGAMNF---------------STADSAKIKTLEAEKAALAAR 226 Query: 155 YHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELETITREQEINRNLLGNAKLEL 214 + A I + LE + + E N ++ Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAA---LEARQAELEKALEGAMNFSTADSAKI 283 Query: 215 DQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDLANLTAELDKVK 274 L +EK L EKA LE + Q+ +A+RQSLRRDLDASREAKKQ+E AE K++ Sbjct: 284 KTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLE-------AEHQKLE 336 Query: 275 EDKQISDASRQGLRRDLDASREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDLD 334 E +IS+ASRQ LRRDLDASREAKKQ+E AE K++E+ +IS+ASRQ LRRDLD Sbjct: 337 EQNKISEASRQSLRRDLDASREAKKQLE-------AEHQKLEEQNKISEASRQSLRRDLD 389 Query: 335 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEQLA 394 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKE+LA Sbjct: 390 ASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLA 449 Query: 395 KQAEELAKLRAGKASDSQTPDTKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG 454 KQAEELAKLRAGKASDSQTPD KPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG Sbjct: 450 KQAEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTG 509 Query: 455 ETANPFFTAAALTVMATAGVAAVVKRKEEN 484 ETANPFFTAAALTVMATAGVAAVVKRKEEN Sbjct: 510 ETANPFFTAAALTVMATAGVAAVVKRKEEN 539 Score = 51.2 bits (122), Expect = 5e-09 Identities = 83/413 (20%), Positives = 145/413 (35%), Gaps = 50/413 (12%) Query: 1 MAKNNTNRHYSLRKLKTGTASVAVALTVLGAGFANQTEVKANGDGNPREVIEDLAANNPA 60 M KNNTNRHYSLRKLKTGTASVAVALTVLGAG T + +A + Sbjct: 1 MTKNNTNRHYSLRKLKTGTASVAVALTVLGAGLVVNTNEVS-----------AVATRSQT 49 Query: 61 IQNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYD 120 +++ + + L+ L ++ + + KL++ + Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL- 108 Query: 121 LAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQAS 180 ++ +ELE +K LE A++ A +A K LE +K AL Sbjct: 109 -------SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLE 161 Query: 181 QDYNRANVLEKELETITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDA 240 + L+ + + + LE EK +A Sbjct: 162 KA-------------------------------LEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 241 SRQSLRRDLDASREAKKQVEKDLANLTAELDKVKEDKQISDASRQGLRRDLDASREAKKQ 300 + L + L+ + + L AE + K + + +G A K Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 301 VEKDLANLTAELDKVKEEKQISDASRQGLRRDLDASREAKKQVEKALEEANSKLAALEKL 360 +E + A L A ++++ + + + K +E + + L Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 361 NKELEESKKLTEKEKAELQAKLEAEAKALKEQLAKQAEELAKLRAGKASDSQT 413 + L + + K +L+A+ + + K A + L A + + Q Sbjct: 311 RQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQL 363
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 30.0 bits (67), Expect = 0.021 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 22/145 (15%) Query: 242 GGQVMETVGIENMIGTLYT--EGPKLMAEVEAHTKSYDVDIIKAQLATSIEKKENIEVTL 299 G M+ G+E +GTL E P + A + + + +DI+K K++ + T Sbjct: 205 NGSAMQIRGVEKALGTLKITHENPNVEANYDENAAALSIDIVK--------KQKGGKGTA 256 Query: 300 ANGAVLQAKTAILALGAKWRNINVPGEDEFRNKGVTYCPHCDGPLFEGKDVAVIGGGNSG 359 A G + + + + RN+ +D+F K DG + K + GN Sbjct: 257 AQGIYINSTSGTTGKLLRIRNLG---DDKFYVKH-------DGGFYAKKTSQI--DGNLK 304 Query: 360 LEAALDLAGLAKHVYVLEFLPELKA 384 L+ A YV + +LKA Sbjct: 305 LKNPTADDHAATKAYVDSEVKKLKA 329
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 45.9 bits (109), Expect = 2e-07 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%) Query: 39 IAIKDGLIVALG-SGEPDAE-----LVGTQTIMRSYKGKIATPGIIDCHTHLV 85 I +KDG I A+G +G PD + +VG T + + +GKI T G +D H H + Sbjct: 88 IGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI 140
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.4 bits (66), Expect = 0.047 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Query: 251 LFISSGLGGMSGAQGKAAEIAKAVAIIAEVDQSRIKTRHSQGWIS 295 L+I + G++GA G A A A IA++ + RH G++S Sbjct: 99 LYIGRIVAGITGATG-----AVAGAYIADITDGDERARHF-GFMS 137
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 16/161 (9%) Query: 131 GLSQLTQATTLSDEKAKGIQSLIVGLPVLNQGIQQLNTELSTLQPPNLNADELGNSLGAI 190 L +S+E+ + SLI +Q +T + LN D+ + Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIK---------EQFSTWQNQKYQKELNLDKKR-AERLT 218 Query: 191 AQAAKQVIAEETAAQNEELSALQA----TSVYQSLTAEQQGELAAALSQSDKSQTVSAAQ 246 A + + L + ++ + EQ+ + A ++ S + Sbjct: 219 VLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEA--VNELRVYKSQLE 276 Query: 247 TILSSVQTLSTSLQSLSQEDQSKQLEQLKEAVAQIANQSNQ 287 I S + + Q ++Q +++ L++L++ I + + Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLE 317
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 90.3 bits (224), Expect = 3e-22 Identities = 65/341 (19%), Positives = 135/341 (39%), Gaps = 22/341 (6%) Query: 37 KKLSSKHQHKFIQLLANLLSTGFSFAEVIAFLKRS--QLLQLDYVLKMEESLLKGQGLAD 94 +LS+ + LA L++ E + + + + + + +++G LAD Sbjct: 63 IRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLAD 122 Query: 95 MLSGLG--FSDAILTQISLADRHGNIETTLVAIQHYLNQMARIRRKTVEVITYPLILLLF 152 + F ++ + G+++ L + Y Q ++R + + + YP +L + Sbjct: 123 AMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVV 182 Query: 153 LFVMMLGLRRYLVPQLETQNQ---------------ITYFLNHFPAFFIGFCSGLILLFG 197 ++ L +VP++ Q ++ + F + + + F Sbjct: 183 AIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFR 242 Query: 198 MVWLRWRSQSRLKLYSRLSRYPFLGKLLKQYLTSYYAREWGTLIGQGLDLMTILDIMAIE 257 + LR + + R+ + RL P +G++ + T+ YAR L + L+ + I Sbjct: 243 V-MLR-QEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300 Query: 258 KSSL-MKELAEDIRMSLLEGQAFHIKVATYPFFKKELSLMIEYGEIKSKLGAELEIYAQE 316 S+ + ++ EG + H + F + MI GE +L + LE A Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360 Query: 317 SWEQFFSQLYQVTQLIQPAIFLVVAVTIVMIYAAILLPIYQ 357 +F SQ+ L +P + + +A ++ I AIL PI Q Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQ 401 Score = 34.8 bits (80), Expect = 4e-04 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 235 REWGTLIGQGLDLMTILDIMAIE-KSSLMKELAEDIRMSLLEGQAFHIKVATYP-FFKKE 292 R+ TL+ + L LD +A + + + +L +R ++EG + + +P F++ Sbjct: 75 RQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERL 134 Query: 293 LSLMIEYGEIKSKLGAELEIYA--QESWEQFFSQLYQVTQLIQPAIFLVVAVTIVMIYAA 350 M+ GE L A L A E +Q S++ Q +I P + VVA+ +V I + Sbjct: 135 YCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQA--MIYPCVLTVVAIAVVSILLS 192 Query: 351 ILLPIYQNM 359 +++P Sbjct: 193 VVVPKVVEQ 201
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 52.6 bits (126), Expect = 4e-12 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 9 RHKKLKGFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELS 68 K +GFTLLE+++VI++I VL L VPNL K++ + + + +EN ++Y+L Sbjct: 3 ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLD 62 Query: 69 QGSKPSLSQ-LKA--DGSITEKQEKAY-QDYYDK 98 P+ +Q L++ + Y ++ Y K Sbjct: 63 NHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIK 96
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 28.0 bits (62), Expect = 0.012 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 9/71 (12%) Query: 37 LLKHSHYLARHDQDNWLLFSHQL--REELSGARFYKVADNK-LYVEKGKKVLAFGQFKSH 93 K+S ++ D D ++ R ++ +Y VA N YV KV G + Sbjct: 217 TFKYSGWVESSDNDEHYDPGKRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRV 276 Query: 94 DFRKSASNGKG 104 N KG Sbjct: 277 T------NKKG 281
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 502 bits (1293), Expect = e-180 Identities = 209/401 (52%), Positives = 281/401 (70%), Gaps = 7/401 (1%) Query: 3 KTIAINAGSSSLKWQLYQMPEEAVLAQGIIERIGLKDSISTVKYDGKKEEQILDIHDHTE 62 K + IN GSSSLK+QL + + VLA+G+ ERIG+ DS+ T +G+K + D+ DH + Sbjct: 2 KILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHNANGEKIKIKKDMKDHKD 61 Query: 63 AVKILLNDLI--HFGIIAAYDEITGVGHRVVAGGELFKESVVVNDKVLEQIEELSVLAPL 120 A+K++L+ L+ +G+I EI VGHRVV GGE F SV++ D VL+ I + LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 121 HNPGAAAGIRAFRDILPDITSVCVFDTSFHTSMAKHTYLYPIPQKYYTDYKVRKYGAHGT 180 HNP GI+A I+PD+ V VFDT+FH +M + YLYPIP +YYT YK+RKYG HGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 181 SHKYVAQEAAKMLGRPLEELKLITAHIGNGVSITANYHGKSVDTSMGFTPLAGPMMGTRS 240 SHKYV+Q AA++L +P+E LK+IT H+GNG SI A +GKS+DTSMGFTPL G MGTRS Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 241 GDIDPAIIPYLIEQDPELKDAADVVNMLNKKSGLSGVSGISSDMRDI-EAGLQEDNPDAV 299 G IDP+II YL+E+ E A +VVN+LNKKSG+ G+SGISSD RD+ +A + + A Sbjct: 242 GSIDPSIISYLMEK--ENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQ 299 Query: 300 LAYNIFIDRIKKCIGQYFAVLNGADALVFTAGMGENAPLMRQDVIGGLTWFGMDIDPEKN 359 LA N+F R+KK IG Y A + G D +VFTAG+GEN P +R+ ++ GL + G +D EKN Sbjct: 300 LALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKN 359 Query: 360 -VFGYRGDISTPESKVKVLVISTDEELCIARDVERL-KNTK 398 V G IST +SKV V+V+ T+EE IA+D E++ ++ K Sbjct: 360 KVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVESLK 400
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 133 bits (337), Expect = 2e-38 Identities = 74/344 (21%), Positives = 136/344 (39%), Gaps = 44/344 (12%) Query: 4 NIIVTGGAGFIGSNFVHY-VYNNHPDVHVTVLDKLT--YAGN--RANIEAILGDRVELVV 58 +VTG AGFIG + + H V +D L Y + +A +E + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH---QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHK 58 Query: 59 GDIADAELVDKLAA--KTDVIVHYAAESHNDNSLEDPSPFIHTNFIGTYTLLEAARKYDI 116 D+AD E + L A + + SLE+P + +N G +LE R I Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 117 RFHHV--STDEVYGDLPLREDLPGQGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWV 174 + H + S+ VYG L +P + + +P S Y++TK A++L+ + Sbjct: 119 Q-HLLYASSSSVYG---LNRKMPFSTDDSVD--------HPVSLYAATKKANELMAHTYS 166 Query: 175 RSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTG 234 +G+ AT YGP+ + + + +L G +Y GK RD+ + +D + Sbjct: 167 HLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEA 226 Query: 235 VWAIL------------------TKGRIGETYLIGADGEKNNKEVLELILEKMGQPKDAY 276 + + Y IG + ++ + + +G Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK- 285 Query: 277 DHVTDRAGHDLRYAIDSTKLREELGWEPQFTNFSEGLEETIKWY 320 + + + G L + D+ L E +G+ P+ T +G++ + WY Sbjct: 286 NMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNWY 328
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.007 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 20/178 (11%) Query: 25 KALKEDDADSLIALGEYLESIGFLPHAKRIYLQLADDYPELNINLAQIAAEDDAIEEAF- 83 + L E++ +S+ + GE + P A R + + P+L IN+ A + +E + Sbjct: 118 QDLSEEEKNSMNSRGEKV------PFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYY 171 Query: 84 -----LYLDKVSKDS---PNYLSALLVMADLYDMEGLTEVAREKLLQAVGISPEPLVIFG 135 + LD +SKD P +L+ + ++D D + + +K + + ++ + + I Sbjct: 172 EIGKGISLDIISKDKSLDPEFLNLIKSLSD--DSDSSDLLFSQKFKEKLELNNKSIDINF 229 Query: 136 LAEIDMSLQH-FKEAIDYYAQLDNRQILELTGISTYQRIGRAYASLGKFEAAIEFLEK 192 + E QH F A YY D+R +LEL ++ + + G FE E L+K Sbjct: 230 IKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNK--LEKGGFEKISESLKK 285
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 535 bits (1379), Expect = 0.0 Identities = 148/455 (32%), Positives = 250/455 (54%), Gaps = 32/455 (7%) Query: 1 MGKHSNIILVDRAENKIIESIKHVGFSQNSYRTILPGSTYIEPPKTAAVNPFTITD--VP 58 MG+HSN+ L+ + +N I++SIKH+ N+YR+I PG Y+ PPK+ +NPF + + Sbjct: 123 MGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDMIE 182 Query: 59 LFEILQTQELTVKSLQQHFQGLGRDTAKELAELLTTDKLKR---------------FREF 103 F + +L + F G+ + + E+ L + + F+E Sbjct: 183 NFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEI 242 Query: 104 FARPTQANLTTASFAPVLF---------SDSHATFETLSDMLDHFYQDKAERDRINQQAS 154 + + N T + + V F +++ S +L++FY K + DR+ ++S Sbjct: 243 QSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSKSS 302 Query: 155 DLIHRVQTELDKNRNKLSKQEAELLATENAELFRQKGELLTTYLSLVPNNQDSVILDNYY 214 DL V +++ K L E+ ++F+ GELLT + + + L NYY Sbjct: 303 DLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELANYY 362 Query: 215 T--GEKIEIALDKALTPNQNAQRYFKKYQKLKEAVKHLSGLIADTKQSITYFESVDYNLS 272 + + ++I LD+ TP+QN Q Y+KKY KLK++ + + + ++ + Y SV N++ Sbjct: 363 SENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNIN 422 Query: 273 QA-SIDDIEDIREELYQAGFLKSRQ--RDKRHKRKKPEQYLASDGTTILMVGRNNLQNEE 329 A + D+IE+I++EL + G++K ++ + K+ K KP +++ DG I VG+NN+QN+ Sbjct: 423 NADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIY-VGKNNIQNDY 481 Query: 330 LTFKMAKKGELWFHAKDIPGSHVIIKDNLDPSDEVKTDAAELAAYYSKARLSNLVQVDMI 389 LT K A K ++WFH K+IPGSHVI+K+ +D + +AA LAAYYSK++ S+ V VD Sbjct: 482 LTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVDYT 541 Query: 390 EAKKLHKPSGAKPGFVTYTGQKTLRVTPDQAKILS 424 E K + KP+GAKPG V Y+ +T+ VTP + + Sbjct: 542 EVKNVKKPNGAKPGMVIYSTNQTIYVTPTNPNLKN 576
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 129 bits (327), Expect = 4e-39 Identities = 33/84 (39%), Positives = 53/84 (63%) Query: 1 MSFDGFFLHHLTNELKENLLYGRIQKVNQPFERELVLTIRNHRKNYKLLLSAHPVFGRVQ 60 M+ DG FL+ + +ELK ++ G+I KVNQP + E++L IR R ++KLL+S+ + R+ Sbjct: 1 MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60 Query: 61 ITQADFQNPQVPNTFTMIMRKYLQ 84 +T NP F M++RKY+ Sbjct: 61 LTDLTKPNPIKAPMFCMVLRKYIS 84
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 47.4 bits (113), Expect = 5e-08 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 16/191 (8%) Query: 170 RKTVERAGIKVENIIISPLAMAKTILNEGEREFGATVIDMGGGQTTVASMRAQELQYTNI 229 R++ + AG + +I P+A A G+ V+D+GGG T VA + + Y++ Sbjct: 127 RESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSS 186 Query: 230 YAEGGEYITKDISKVLKTSLAI------AEALKFNFGQAEISEASITETVK-VDVV-GSE 281 GG+ + I ++ + AE +K G A + V+ ++ G Sbjct: 187 VRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVP 246 Query: 282 EPVEVTERYLSEIISARIRHILDRVKQDLER------GRLLDLPGGIVLIGGGAIMPGVV 335 + + E + + I+ V LE+ + + G+VL GGGA++ + Sbjct: 247 RGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE--RGMVLTGGGALLRNLD 304 Query: 336 EIAQEIFGVTV 346 + E G+ V Sbjct: 305 RLLMEETGIPV 315
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 30.7 bits (69), Expect = 0.010 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%) Query: 154 FEQEDQLSKVKHLGAVTKVFKDANQMPESTQLE-AVKEYFSRDLKTLLFIGGSAGAHVFN 212 FE ++K + + N + S+ E A S K + G Sbjct: 83 FEALKAINKQTGI--------EINNVEPSSNFESAYNSALSAGHKIWVLNGFKHQQS-IK 133 Query: 213 QFISDHPELKQRYNIINITGDPHLNELSSHLYRVDYVTD 251 Q+I H E +R I I D + Y + + Sbjct: 134 QYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFNIK 172
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 186 bits (473), Expect = 4e-53 Identities = 102/477 (21%), Positives = 187/477 (39%), Gaps = 97/477 (20%) Query: 8 IRNVAIIAHVDHGKTTLVDELLKQSHTLDERKELQE--RAMDSNDLEKERGITILAKNTA 65 I N+ ++AHVD GKTTL + LL S + E + + D+ LE++RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 66 VAYNDVRINIMDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLI 125 + + ++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + + Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 126 PIVVVNKIDKPSARP-------------------------------------AEVVDEVL 148 I +NKID+ + V E Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 149 ELFIELGADDEQLE-----------------FPVVYASAINGTSSLSDDPADQEHTMAPI 191 + +E + LE FPV + SA N + + Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG------------IDNL 230 Query: 192 FDTIIDHIPAPVDNSDEPLQFQVSLLDYNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTT 251 + I + + L +V ++Y++ R+ R++ G + + D V +S Sbjct: 231 IEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRIS----EK 286 Query: 252 KNFRVTKLFGFFGLERREIQEAKAGDLIAVSGMEDIFVGETITPTDCVEALPILRIDEPT 311 + ++T+++ E +I +A +G+++ + E + + + T + + P Sbjct: 287 EKIKITEMYTSINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPL 345 Query: 312 LQMTFLVNNSPFAGREGKWITSRKVEER--LLAELQT----DVSLRVDPTDSPDKWTVSG 365 LQ T + K ++R LL L D LR + + +S Sbjct: 346 LQTT---------------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSF 390 Query: 366 RGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVKCEPFERVQIDTPEEYQGAII 421 G++ + + ++ + E+++ P VI E K E + I+ P A I Sbjct: 391 LGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAE--YTIHIEVPPNPFWASI 445 Score = 42.5 bits (100), Expect = 4e-06 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 403 EPFERVQIDTPEEYQGAIIQSLSERKGDMLDMQMVGNGQTRLIFLIPARGLIGYSTEFLS 462 EP+ +I P+EY + +++D Q + N + L IPAR + Y ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 463 MTRGYGIMNHTFDQYLPVV 481 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHVTT 614
>PF03309#Bvg accessory factor Length = 271 Score = 31.7 bits (72), Expect = 0.003 Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 14/126 (11%) Query: 5 LLGIDLGGTTIKFGILTAAGEVQE---KWAIETNILEGGKHIVPDIIASIKHRLDLYGLS 61 LL ID+ T G+++ +G+ + +W I T + D +A L G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTE-----PEVTADELALTIDG--LIGDD 54 Query: 62 SADFVGIGMGSPGAVDRDTNTVTGAFNLNWKETQEVGSVVEKELGIPFAIDNDANVAALG 121 + G S V + V W V GIP +DN V A Sbjct: 55 AERLTGASGLS--TVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGA-- 110 Query: 122 ERWVGA 127 +R V Sbjct: 111 DRIVNC 116
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 578 bits (1492), Expect = 0.0 Identities = 191/410 (46%), Positives = 276/410 (67%), Gaps = 9/410 (2%) Query: 5 TPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDE 64 PI+++SEIG+LKKVLLHRPG+E+ENL P ++ LFDDIP+LE A++EH+ FA L++ Sbjct: 6 NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65 Query: 65 GIEVLYLETLAAESLVTP-EIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEK 123 +E+ Y+E L +E LV+ + FI +++ EA I+ T +++ ++ +I K Sbjct: 66 LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSL-TIDNMISK 124 Query: 124 TMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSE 183 ++GV EL +S L DLV F IDPMPN+ FTRDPFA+IG GV++N MF++ Sbjct: 125 MISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTK 181 Query: 184 TRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAA 243 R RET++ +YIF +HP+Y VP+ +R E +EGGDELVL+K +L +GIS+RT+A Sbjct: 182 VRQRETIFAEYIFKYHPVYKE-NVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAK 240 Query: 244 SIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSV 303 S+EKL +++FK F +LAF+ NR +MHLDTVFT +DY FT + +Y + Sbjct: 241 SVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVL 300 Query: 304 TYDNE--ELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAP 361 TY+ ++HI +EK + ++L+ LG K+D+I+C G +L+ REQWNDG+N L IAP Sbjct: 301 TYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAP 359 Query: 362 GVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411 G ++ Y+RN +TN + E G+K+ +I SEL RGRGGPRCMSMP REDI Sbjct: 360 GEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 123 bits (311), Expect = 4e-39 Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%) Query: 1 MNKKETRHQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDT 60 MNK + RH IR +I+ I TQ EL + L+K+G +TQAT+SRD+KEL+LVKV + N + Sbjct: 1 MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGS 59 Query: 61 HYEALAISQTRWEH-RLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIV 119 + +L Q +L+ + DA V + H I+LKT+PG AQ+ G+++D + EI+ Sbjct: 60 YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIM 119 Query: 120 ATVCGDDTCLIVCEDNEQAKACYETL 145 T+CGDDT LI+C ++ K + + Sbjct: 120 GTICGDDTILIICRTHDDTKVVQKKI 145
>PF06580#Sensor histidine kinase Length = 349 Score = 182 bits (464), Expect = 1e-54 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 10/203 (4%) Query: 362 EKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGN- 420 + +L AL +QINPHF++N L+ I + D + E+ SL++ R +L N Sbjct: 155 ASMAQEAQLMALKAQINPHFMFNALNNIRALIL-EDPTKAREMLTSLSELMRYSLRYSNA 213 Query: 421 EYIRLADELDHVSQYLFIQKQRYGDKLSYEVQGLDVYADFVIPKLILQPLVENAIYHGIK 480 + LADEL V YL + ++ D+L +E Q D +P +++Q LVEN I HGI Sbjct: 214 RQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA 273 Query: 481 EVDRKGMIKVTVSDTAQHLMLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHY 540 ++ + G I + + + L V + G ++ ++ G GL+NV +RL++ Y Sbjct: 274 QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST-------GTGLQNVRERLQMLY 326 Query: 541 GEGYHMTIHSQSDQFTEIQLSLP 563 G + + + + + + +P Sbjct: 327 GTEAQIKLSEKQGKVNAM-VLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 3e-24 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%) Query: 3 SLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLN 62 ++L+ +D+ +R + + + + V N W D+V+TD+ MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKK 122 L IK+ P ++ ++ + F A+ A + GA DYL KPF D+ +++G + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRA 118 Query: 123 LELSKKTETIQELVEQPQKEVSAIAMAIHE------RLADSDLTL 161 L K+ + E Q + + A+ E RL +DLTL Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 28.2 bits (63), Expect = 0.043 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 255 LASVATSIVGVVSFLGL---IVPHMSRLLVGSKHQILIPFSALLGAFVFLLADTLGRSLA 311 + S A + +GL H S+L++ Q +PFS L V + L Sbjct: 29 VVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFF-YLC 87 Query: 312 YPLEISPAIIMSIVGG 327 +PL ++ A +M+I Sbjct: 88 FPL-LTVAALMAIASH 102
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 67.7 bits (165), Expect = 3e-15 Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 24/265 (9%) Query: 18 VACVNQHPKTAKETEQQRIVATSVAVVDICDRLNLDLVGVCDSKLYTL----PKRYDAVK 73 + A + RIVA V++ L + GV D+ Y L P D+V Sbjct: 20 PLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVI 79 Query: 74 RVGLPMNPDIELIASLKPTWILSPNSLQEDLEPKYQKLDTEYGFLNLRSVEG------MY 127 VGL P++EL+ +KP++++ P + L +G Sbjct: 80 DVGLRTEPNLELLTEMKPSFMV----WSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMAR 135 Query: 128 QSIDDLGNLFQRQQEAKELRQQYQDYYRAFQAKRKGK-KKPKVLILMGLPGSYLVATNQS 186 +S+ ++ +L Q A+ QY+D+ R+ + + + +P +L + P LV S Sbjct: 136 KSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNS 195 Query: 187 YVGNLLDLAGGENVYQSDEKEFLSA--NPEDMLA-KEPDLILRTAHAIPDKVKVMFDKEF 243 +LD G N +Q + + S + + + A K+ D++ D +M Sbjct: 196 LFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALM----- 250 Query: 244 AENDIWKHFTAVKEGKVYDLDNTLF 268 +W+ V+ G+ + F Sbjct: 251 -ATPLWQAMPFVRAGRFQRVPAVWF 274
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 347 bits (891), Expect = e-120 Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 23/368 (6%) Query: 7 RPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQVDGYCVSN 66 RP A ++LQA+K+N++ V++ + ++VVKA+AYGHG ++ A+ DG+ + N Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAT-HARVWSVVKANAYGHGIERIWSAI-GATDGFALLN 60 Query: 67 LDEALQLRQAGIDKEILIL-GVLLPNELELAVANAITVTIAS---LDWIALARLEKKECQ 122 L+EA+ LR+ G IL+L G +LE+ + +T + S L + ARL+ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP--- 117 Query: 123 GLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQ 182 L +++KV+SGM R+G + + + + + +HFA A+ D + Sbjct: 118 -LDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGIS--GAMA 174 Query: 183 FFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGS-DLSLPFPLQE 241 ++ GL SNSA ++WH + F+ VR GI+ YG +PSG L+ Sbjct: 175 RIEQAAEGL---ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRP 231 Query: 242 ALSLESSLVHVKMISAGDTVGYGATYTAKKSEYVGTVPIGYADGWTRNM-QGFSVLVDGQ 300 ++L S ++ V+ + AG+ VGYG YTA+ + +G V GYADG+ R+ G VLVDG Sbjct: 232 VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGV 291 Query: 301 FCEIIGRVSMDQLTIRLPKA--YPLGTKVTLIGSNQQKNISTTDIANYRNTINYEVLCLL 358 +G VSMD L + L +GT V L G K I D+A T+ YE++C L Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWG----KEIKIDDVAAAAGTVGYELMCAL 347 Query: 359 SDRIPRIY 366 + R+P + Sbjct: 348 ALRVPVVT 355
>SECA#SecA protein signature. Length = 901 Score = 1052 bits (2723), Expect = 0.0 Identities = 394/903 (43%), Positives = 560/903 (62%), Gaps = 73/903 (8%) Query: 1 MANILRKVIENDKG-ELRKLEKIAKKVESYADQMASLSDRDLQGKTLEFKERYQKGETLE 59 + +L KV + LR++ K+ + + +M LSD +L+GKT EF+ R +KGE LE Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 QLLPEAFAVVREAAKRVLGLFPYRVQIMGGIVLHNGDVPEMRTGEGKTLTATMPVYLNAI 119 L+PEAFAVVREA+KRV G+ + VQ++GG+VL+ + EMRTGEGKTLTAT+P YLNA+ Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 AGEGVHVITVNEYLSTRDATEMGEVYSWLGLSVGINLAAKSPAEKREAYNCDITYSTNSE 179 G+GVHV+TVN+YL+ RDA ++ +LGL+VGINL KREAY DITY TN+E Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 VGFDYLRDNMVVRQEDMVQRPLNFALVDEVDSVLIDEARTPLIVSGAVSSETNQLYIRAD 239 GFDYLRDNM E+ VQR L++ALVDEVDS+LIDEARTPLI+SG + ++Y R + Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS-EMYKRVN 240 Query: 240 MFVKTLT------------SVDYVIDVPTKTIGLSDSGIDKAESYFNLS-------NLYD 280 + L + +D ++ + L++ G+ E +LY Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 281 IENVALTHFIDNALRANYIMLLDIDYVVSEDGEILIVDQFTGRTMEGRRFSDGLHQAIEA 340 N+ L H + ALRA+ + D+DY+V +DGE++IVD+ TGRTM+GRR+SDGLHQA+EA Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIV-KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359 Query: 341 KEGVRIQEESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREVYNMRIIPIPTNRPIA 400 KEGV+IQ E++T ASIT+QN FR+Y+KLAGMTGTA TE EF +Y + + +PTNRP+ Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419 Query: 401 RIDHTDLLYPTLESKFRAVVEDVKTRHAKGQPILVGTVAVETSDLISRKLVEAGIPHEVL 460 R D DL+Y T K +A++ED+K R AKGQP+LVGT+++E S+L+S +L +AGI H VL Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 461 NAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLG----------------------- 497 NAK H EA I+ AG AVTIATNMAGRGTDI LG Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 498 ------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMRRFG 551 + V E GGL +IGTERHESRRIDNQLRGRSGRQGD G S+FYLS+ED LMR F Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 552 SDRIKAFLDRMKLDEEDTVIKSGMLGRQVESAQKRVEGNNYDTRKQVLQYDDVMREQREI 611 SDR+ + ++ + + I+ + + + +AQ++VE N+D RKQ+L+YDDV +QR Sbjct: 600 SDRVSGMMRKLGM-KPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRA 658 Query: 612 IYANRRDVITANRDLGPEIKAMIKRTIDRAVDAHARSNR---KDAIDAIVTFARTSLVPE 668 IY+ R +++ + D+ I ++ + +DA+ I + + + Sbjct: 659 IYSQRNELLDVS-DVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLD 717 Query: 669 ESIS--AKELRGLKDDQIKEKLYQRALAIYDQQLSKLRDQEAIIEFQKVLILMIVDNKWT 726 I+ + L ++ ++E++ +++ +Y ++ + E + F+K ++L +D+ W Sbjct: 718 LPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTLDSLWK 776 Query: 727 EHIDALDQLRNAVGLRGYAQNNPVVEYQAEGFKMFQDMIGAIEFDVTRTMMKAQIH-EQE 785 EH+ A+D LR + LRGYAQ +P EY+ E F MF M+ +++++V T+ K Q+ +E Sbjct: 777 EHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEE 836 Query: 786 RERASQRATTAAPQNIQSQQSANTDD-------------LPKVERNEACPCGSGKKFKNC 832 E Q+ A + Q QQ ++ DD KV RN+ CPCGSGKK+K C Sbjct: 837 VEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQC 896 Query: 833 HGR 835 HGR Sbjct: 897 HGR 899
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 27.1 bits (59), Expect = 0.014 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 9 KQAQKLQKQMEQKQADLAAMQFTGKSAQDLVTA-----TFTGDKKLVGIDFKEAVVDPED 63 +QAQK QK +K+ + A + ++L A + +K L + ++ + + Sbjct: 156 EQAQKAQKDKREKRKEERAKNRA--NLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQ 213 Query: 64 VETLQDMTTQAINDALTQIDETTKK 88 +E L+DM QA +AL QI+E KK Sbjct: 214 MERLEDMQEQAQANALKQIEELNKK 238
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 28.3 bits (63), Expect = 0.032 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 131 KNQKAWKKLQWKMGISIFLAIVSY-VGLILLSSYLQKFWLVYVAMGLFLPGFSWLVI 186 + Q+ ++Q M L +V+ V ILLS + K ++ M LP + +++ Sbjct: 161 QRQQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLM 217
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.004 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Query: 67 EETKQRELLEILVDEKNTEITRLYEQLKAKDAQLASKDEQMRVKDVQIAEKDKQLDQQQQ 126 E ++E + +E++ T + AK+A+ K + Q E + + Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA------NTQTNEVAQS--GSET 1092 Query: 127 LTAKAMADKETLKLELEE-AKAEANQARLQVEEVQAEVGPKK 167 + KET +E EE AK E + + +V +V ++V PK+ Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQ-EVPKVTSQVSPKQ 1133
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 28.9 bits (64), Expect = 0.035 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 7 IIIGGGPAGMMAAISSSYYGYKTLLIEKNRRLGKKLAGTGGGRCNVTNSGNLDVLM 62 + +G PAG+ ++Y K + + LG +LA RCN+ + G+ + M Sbjct: 140 VTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY-NIRCNIVSPGSTETDM 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.022 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 45 IIGASGSGKSLLAHAI 60 I G SG+GK L+A A+ Sbjct: 165 ITGESGTGKELVARAL 180
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 37.4 bits (86), Expect = 2e-04 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 226 IPKKDLSPSELAAAQAYWSQKQGRGARPSDYRPTPAPAPGRRKAPIPDVTPNPGQGHQPD 285 IP+ DL+P A A + P++ P P PG R P PD NP D Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPAN-NPAPNENPGTRPNPEPDPDLNPDANPDTD 368 Query: 286 -NGGYHPAPPRPNDASQNKHQRDEFKGK 312 G P P D +H+++ +G+ Sbjct: 369 GQPGTRPDSPAVPDRPNGRHRKERKEGE 396
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 250 bits (640), Expect = 2e-84 Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 34/323 (10%) Query: 1 MKKGFFLMAMVVSLVMIAGCDKSANPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MI 59 MKK L+ + +S +++ C Q + VV + + +TK ++GD D+ ++ Sbjct: 1 MKKLGTLLVLFLSAIILVACASGKKDTTSGQKLKVVATNSIIADITKNIAGDKIDLHSIV 60 Query: 60 QSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLE----AWARDLDPNLKKSKVDVFEASKP 115 G H +EP DV +ADL Y+ LE AW L N KK++ + A Sbjct: 61 PIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVENAKKTENKDYFA--- 117 Query: 116 LTLDRVKGLEDMEVTQGIDPATLY--------DPHTWTDPVLAGEEAVNIAKELGRLDPK 167 V+ G+D L DPH W + A NIAK+L DP Sbjct: 118 -------------VSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPN 164 Query: 168 HKDSYTKNAKAFKKEAEQLTEEYTQKFKKVR--SKTFVTQHTAFSYLAKRFGLKQLGISG 225 +K+ Y KN K + + ++L +E KF K+ K VT AF Y +K +G+ I Sbjct: 165 NKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWE 224 Query: 226 ISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKT---LSPLEA 282 I+ E+E +P Q+K + + +++ V ++F E +V+ + +++ T + + Sbjct: 225 INTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIPIYAQIFTDSIAE 284 Query: 283 APSGNKTYLENLRANLEVLYQQL 305 +Y ++ NL+ + + L Sbjct: 285 QGKEGDSYYSMMKYNLDKIAEGL 307
>PF05043#Transcriptional activator Length = 493 Score = 519 bits (1339), Expect = 0.0 Identities = 109/473 (23%), Positives = 217/473 (45%), Gaps = 20/473 (4%) Query: 34 ELSKALNISMLTLQTCLTNMQ-FMKEVGGITYKNGYITIWYHQHCGLQEVYQKALRHSQS 92 EL++ LN + ++ L++++ ++ + NG I ++ VY +HS Sbjct: 30 ELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINT-DDSDIEMVYHHFFKHSTH 88 Query: 93 FKLLETLFFRDFNSLEELAEELFVSLSTLKRLIKKTNAYLMHTFGITILTSPVQVSGDEH 152 F +LE +FF + E + +E ++S S+L R+I + N + F + +PVQ+ G+E Sbjct: 89 FSILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTPVQIIGNER 148 Query: 153 QIRLFYLKYFSEAYKISEWPFGEILNLKNCERLLSLMIKEVDVRVNFTLFQHLKILSSVN 212 IR F+ +YFSE Y EWPF + + +LL L+ KE +N + + LK+L N Sbjct: 149 DIRYFFAQYFSEKYYFLEWPFEN-FSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTN 207 Query: 213 LIRYYKGHSAVYDNKKTSQRFSQLIQSSLEFQDLSRLFHLKFGLYLDETTIAEMFSNHVN 272 L R GH D + + + + + +++ F ++ + LDE + ++F ++ Sbjct: 208 LYRIKFGHFMEVDKDSFNDQSLDFLMQAEGIEGVAQSFESEYNISLDEEVVCQLFVSYFQ 267 Query: 273 DQLEIGYAF--DSIKQDSPTGCRKVTNWVHLL----DELEIRLNLSVTNKYEVAVILHNT 326 I + +K+DS V HLL D++ ++ + + NK + LHNT Sbjct: 268 KMFFIDESLFMKCVKKDS-----YVEKSYHLLSDFIDQISVKYQIEIENKDNLIWHLHNT 322 Query: 327 TVLKEEDITANYLFFDYKKSYLNFYKQEHPHLYKAFVAGVEKLMRSEKEPISTELTNQLI 386 L +++ ++ FD K + + ++ P + + + + S+ + N L Sbjct: 323 AHLYRQELFTEFILFDQKGNTIRNFQNIFPKFVSDVKKELSHYLETLEVCSSSMMVNHLS 382 Query: 387 YAFFITWENSFLKVNQKDEKIRLLVI----ERSFNSVGNFLKKYVGEFFSITNFNELDAL 442 Y F ++ + + Q K+++LV+ + V L Y F + + EL+ Sbjct: 383 YTFITHTKHLVINLLQNQPKLKVLVMSNFDQYHAKFVAETLSYYCSNNFELEVWTELELS 442 Query: 443 TIDLEEIEKQYDVIVTDVMVGKSEELEIFFFHKMIPEAIIDKLNAFLNISFAD 495 LE + YD+I+++ ++ E + + + + ++I LNA + I + Sbjct: 443 KESLE--DSPYDIIISNFIIPPIENKRLIYSNNINTVSLIYLLNAMMFIRLDE 493
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 5e-06 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 8/128 (6%) Query: 42 TADTDTDDESETPKKDKKSKETASQHDTQKDHKPSHTHPTPPSNDTKQTDQASSEATDKP 101 T +T T + ET +K+ K TQ+ P T P + +T Q +E + Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEV--PKVTSQVSPKQEQSETVQPQAEP-ARE 1148 Query: 102 NKDKNDTKQPDSSDQSTPSPKDQSSQKESQNKDGRPTPSPDQQKDQTPDKTPEKGPEKAT 161 N + K+P S +T D + + + + + + PE T Sbjct: 1149 NDPTVNIKEPQSQTNTTA---DTEQPAKETSSNVEQPVTESTTVNTGNS--VVENPENTT 1203 Query: 162 DKTPEPNR 169 T +P Sbjct: 1204 PATTQPTV 1211
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 31.7 bits (72), Expect = 0.002 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 10 VINGLIIVVVTSILLVLYFAMPIYYTKVKDKEVKCEFDQTSKQIKGKTVTEIRDILTKKI 69 V + LI+ ++ A+ + + KE +K+ +TEIRD+L ++ Sbjct: 82 VFDFLIVA------FAIFMAIKLINKLNRKKEEPAAAPAPTKEEV--LLTEIRDLLKEQN 133 Query: 70 NK 71 N+ Sbjct: 134 NR 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 KILVVEDDDTISQVICEFLKANNYDPDCVFDGQAALDKWQTTSYDLIILDIMLPSLSGLE 62 ILV +DD I V+ + L YD + DL++ D+++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VLKTIRKT-SDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVLRVSTP 121 +L I+K D+P+++++A + T + + DY+ KPF LI I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 DEKRQIGD 129 + D Sbjct: 125 RPSKLEDD 132
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.8 bits (132), Expect = 3e-10 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 60 DISLTLAGEVTANNSSKVKIDSSKGEVKEVFVKKGDVVKVGQPLFSYETSQRLTAQSSEF 119 +I T G++T + SK VKE+ VK+G+ V+ G L +LTA +E Sbjct: 81 EIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLL------KLTALGAEA 134 Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESLLEQIRSAEDSVSQAL 179 D + Q + A L+ Y I K PDE + + E +L Sbjct: 135 DTL----KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 180 SDAKTADSDVKTAQIELDKANATA 203 + + + Q EL+ A Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRA 214 Score = 39.4 bits (92), Expect = 2e-05 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 16/180 (8%) Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESL---LEQIRSAEDSVS 176 D + ++ +AK + Y VNE+ KS+ E L E + + Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 177 QALSDAKTADSDVKTAQIELDKANATATTEKGKLEYDTVKSDTAGTIVSLNTDLPNQSKS 236 + L + ++ +EL K + + +++ + + L Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEE-------RQQASVIRAPVSVKVQQLKVHTEGGVV- 350 Query: 237 KKENETFMEII-DKSKMLVKGNISEFDRDKLKIGQKVEV-IDRKDNSK--KWTGKVTQVG 292 ET M I+ + + V + D + +GQ + ++ ++ GKV + Sbjct: 351 -TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 25.7 bits (56), Expect = 0.022 Identities = 5/24 (20%), Positives = 8/24 (33%) Query: 22 YSKKVLADEPTSYQPPAAHGPCDD 45 + + A + T AA D Sbjct: 27 KNPQPQAQQTTQTTTTAAGSAADQ 50
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 59.7 bits (144), Expect = 4e-14 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%) Query: 2 EMHFVRTEPEARRIAETFCAENTQTKTPMRVQQLSYPSDTDHSGGEL-----YIYALSPA 56 + +F R E EA+ A TF ++ K R + D + GGEL Y+Y +S Sbjct: 28 DQNFARNEKEAKDSAITFIQKSAAIKAGARSAE-DIKLDKVNLGGELSGSNMYVYNISTG 86 Query: 57 GFIIVSGDTRAHTILGYSFDNNLDLN-HDNVRSMIEAYQKQI 97 GF+IVSGD R+ ILGYS + D N +N+ S +E+Y +QI Sbjct: 87 GFVIVSGDKRSPEILGYSTSGSFDANGKENIASFMESYVEQI 128
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 709 bits (1831), Expect = 0.0 Identities = 398/398 (100%), Positives = 398/398 (100%) Query: 1 MNKKKLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE 60 MNKKKLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE Sbjct: 1 MNKKKLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE 60 Query: 61 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF 120 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF Sbjct: 61 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF 120 Query: 121 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 180 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE Sbjct: 121 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 180 Query: 181 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY 240 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY Sbjct: 181 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY 240 Query: 241 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ 300 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ Sbjct: 241 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ 300 Query: 301 SVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG 360 SVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG Sbjct: 301 SVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG 360 Query: 361 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP 398 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP Sbjct: 361 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP 398