>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1043 bits (2698), Expect = 0.0 Identities = 353/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQVAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQ + D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 30.1 bits (67), Expect = 0.036 Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 40/181 (22%) Query: 436 ANIEALNNALEHYKDLDFTHHIQNPKANMEKALNTLGQEISSMLKASLGFANA------L 489 A+I+ + A Y K L ++ S+ A G+A A Sbjct: 145 ASIKKTDTAKSVYDAA-------------TKKLTQAQNKLQSLDPADPGYAQAEAAVEQA 191 Query: 490 NHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEITNIIT----TIDSKSQEMISQGED- 544 E+ + K +D T K + + E+ NI+T T ++ SQ +SQGE Sbjct: 192 GKEATEAKEALDKATDATVK---AGTDAKAKAEKADNILTKFQGTANAASQNQVSQGEQD 248 Query: 545 -------IKSVVDMIRDIADQT------NLLALNAAIEAARAGEHGRGFAVVADEVRKLA 591 + ++ M +I + N LAL A++ R E + A +E RK Sbjct: 249 NLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEFQEETRKAE 308 Query: 592 E 592 E Sbjct: 309 E 309
>cloacin#Cloacin signature. Length = 551 Score = 29.7 bits (66), Expect = 0.048 Identities = 12/44 (27%), Positives = 23/44 (52%) Query: 14 AKQEAKAEATQEVAQENKTKENNKAKESKIKENKTKESKIKEAK 57 AK+++ A+A A E++ K+ +K + ++ N K K K Sbjct: 415 AKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFK 458
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.2 bits (73), Expect = 0.003 Identities = 37/207 (17%), Positives = 84/207 (40%), Gaps = 1/207 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 VCYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKEHKKALVGGLIFSAVGIGSVF 142 + + F L + RFI G ++A LV + Y+ + + GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLVGLKTRSLRKKSVKKEESAFKITFHLWL 202 + I+ Y I W+++ L I + L+ L + +R K + ++ + Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVF 213 Query: 203 LLISCALNAIGFLPHTLFWVDYLIRHL 229 ++ +I FL ++ ++H+ Sbjct: 214 FMLFTTSYSISFLIVSVLSFLIFVKHI 240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 65.5 bits (159), Expect = 3e-13 Identities = 63/292 (21%), Positives = 99/292 (33%), Gaps = 29/292 (9%) Query: 176 ETPQKEKQEVKETPQEEKE-----EVKETPQEEEKPKDDETQESETPKDEEVSKELEMQE 230 TP + +V P +E E P P + +E K E + E Q+ Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD 1057 Query: 231 KLEIPKEETQEEVKEEMKEETQDSPSAQELEAMQELVKEIQENSNDQEDKKETQESAEAL 290 E EV +E K + + E+ KE Q + E +E A+ Sbjct: 1058 ATE--TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115 Query: 291 QETQAHELEKQEIAE-TPQEKEKQEDTETPQDVEIPQSQEKETQETQEVVTEKTQVQEKE 349 E + QE+ + T Q KQE +ET Q P + T V ++ Q Q Sbjct: 1116 TE------KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT-----VNIKEPQSQTNT 1164 Query: 350 TPKTQEDHYENIEDIPEPVMAKAMGEELPFLNEAVAKTPNNENDTETPKESVTEIS---- 405 T T++ E ++ +PV +V + P N T +E S Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGN----SVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 406 -KNENATEFPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSI 456 ++ + E TSS + L DL S N ++ S K + Sbjct: 1221 NRHRRSVRSVPHNVEPATTSSNDRSTVALCDLT-STNTNAVLSDARAKAQFV 1271 Score = 65.5 bits (159), Expect = 3e-13 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 17/221 (7%) Query: 155 PNNEEQLLPTLDVQEEKEEIKETPQKEKQEVKETPQEEKEEVKETPQEEEKPKDDETQES 214 P T V E ++ +T +K +Q+ ET + +E KE + TQ + Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVK----ANTQTN 1083 Query: 215 ETPKDEEVSKELEMQEKLEIPKEETQEEVKEEMKEETQDSPS-AQELEAMQELVKEIQEN 273 E + +KE + E E E +E+ K E E+TQ+ P ++ QE + +Q Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAKVE-TEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 274 SNDQEDKKETQESAEALQETQAHELEKQEIAETPQEKEKQEDT-----------ETPQDV 322 + + T E +T +Q ET E+ E P++ Sbjct: 1143 AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENT 1202 Query: 323 EIPQSQEKETQETQEVVTEKTQVQEKETPKTQEDHYENIED 363 +Q E+ + + + P E + D Sbjct: 1203 TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 44.7 bits (105), Expect = 8e-07 Identities = 34/207 (16%), Positives = 70/207 (33%), Gaps = 15/207 (7%) Query: 111 QKKLGSNMSELEPSQNLDPTQEVLETNWDELENLGDLEALAKEEPNNEEQLLPTLDVQEE 170 + + E N+ + E E KE E++ ++ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE-------EKA 1112 Query: 171 KEEIKETPQKEKQEVKETPQEEKEEVKETPQEEEKPKDDETQESETPKDEEVSKELEMQE 230 K E ++T + K + +P++E+ E PQ E ++D T + P+ + + Q Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSE-TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ- 1170 Query: 231 KLEIPKEETQEEVKEEMKEETQDSPSAQELE-AMQELVKEIQENSNDQEDKKETQESAEA 289 P +ET V++ + E T + +E Q N + K + Sbjct: 1171 ----PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Query: 290 LQETQAHELEKQEIAETPQEKEKQEDT 316 ++ + H +E + + D Sbjct: 1227 VR-SVPHNVEPATTSSNDRSTVALCDL 1252
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (483), Expect = 7e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSTSGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.016 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 KGRIILKALERIAFE---EFQLHSLHLEVMENNFKAIAFYEKNHYELEG 147 + + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.9 bits (72), Expect = 0.011 Identities = 19/145 (13%), Positives = 52/145 (35%), Gaps = 24/145 (16%) Query: 417 YDKTTDDYLKEL-NQFNQSDSNIKDNLKDMFADRKVLEKDIKNAYDDLFNYPIDDVEAMT 475 + + ++ N + S S++ ++D F + L + D A Sbjct: 83 GLTARYEQMSKIDNMLSTSTSSLATQMQDFF-----------TSLQTLVSNAED--PAAR 129 Query: 476 SAIVSISEMNELLKVSHAINTLKERYNLIRTSNDEKILSLKEKMDIEKISKISSMLHKKA 535 A++ SE + + T + R + + +++ +++I+ + + Sbjct: 130 QALIGKSEG-----LVNQFKTTDQYL---RDQDKQ--VNIAIGASVDQINNYAKQIASLN 179 Query: 536 KHLHALKNINEPKNPNDLMILEDLI 560 + L + +PN+L+ D + Sbjct: 180 DQISRLTGVGAGASPNNLLDQRDQL 204
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.009 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (501), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 396 bits (1018), Expect = e-138 Identities = 128/384 (33%), Positives = 197/384 (51%), Gaps = 9/384 (2%) Query: 2 KIAIVEDDINMRKSLELFFELQDDLEIVSFKNPKDALAKL-DESFDLVITDINMPHMDGL 60 I + +DD +R L + ++ N + DLV+TD+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALS-RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 EFLRLLEGKYES---IVITGNATLNKAIDSIRLGVKDFFQKPFKPELLLESIYRTKKVLE 117 + L ++ +V++ T AI + G D+ KPF E I + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT---ELIGIIGRALA 120 Query: 118 FQKKHPLEKPLKKPHKHSFLAASKALEESKRQALKVASTDANVMLLGESGVGKEVFAHFI 177 K+ P + + S A++E R ++ TD +M+ GESG GKE+ A + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180 Query: 178 HQHSQRSKHPFIAINMSAIPEHLLESELFGYQKGAFTDATAPKMGLFESANKGTIFLDEI 237 H + +R PF+AINM+AIP L+ESELFG++KGAFT A G FE A GT+FLDEI Sbjct: 181 HDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEI 240 Query: 238 AEMPFQLQSKLLRVVQEKEITRLGDNKSVKIDVRFISATNANMKEKIASKEFREDLFFRL 297 +MP Q++LLRV+Q+ E T +G ++ DVR ++ATN ++K+ I FREDL++RL Sbjct: 241 GDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRL 300 Query: 298 QIVPITIAPLRERVEEILPIAEIKLKEVCDAYHLGPKSFSKNAAKRLLEYSWHGNVRELL 357 +VP+ + PLR+R E+I + +++ L K F + A + + + W GNVREL Sbjct: 301 NVVPLRLPPLRDRAEDIPDLVRHFVQQAE-KEGLDVKRFDQEALELMKAHPWPGNVRELE 359 Query: 358 GVVERAAILSEGAEIQEKDLFLER 381 +V R L I + + E Sbjct: 360 NLVRRLTALYPQDVITREIIENEL 383
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MRFFIFFILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDDVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PF07132#Harpin protein (HrpN) Length = 356 Score = 33.1 bits (75), Expect = 1e-04 Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 37 IGEGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIG 81 +G +G G+GG +GG+ +LGG G + G G+GGG+G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 30.0 bits (67), Expect = 0.001 Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 33 LGRDIGEGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIGD 82 +G +G G+G G+GG + G GG G G G+G +G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 26.4 bits (58), Expect = 0.025 Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 34 GKLIGGGVGGFVGDKIGGAIGVPGGPVGIGLGRFLG 69 G G GG D++ + GG GI G LG Sbjct: 220 GSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>PF01206#SirA family protein Length = 76 Score = 26.6 bits (59), Expect = 0.004 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 19 SGKEIEVLSTKPEMRIDISSFC 40 +G+ + V++T P D SF Sbjct: 31 AGEVLYVMATDPGSVKDFESFS 52
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 34.7 bits (79), Expect = 0.001 Identities = 19/162 (11%), Positives = 52/162 (32%), Gaps = 7/162 (4%) Query: 25 ETEKEKERQNTLKKDIKDYTYKVQQAKKRHKHQQTLKIADHCLNIIQRYLQEIERLQQEN 84 ++ E + L+ + T + K + +++ L+ + Sbjct: 188 LEARQAELEKALEGAMNFST---ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 85 KETPTQLEAVLEQIQQEMKSLPIQQKHALQIYYNRFEDVQRRTLAYLDYLSRLKTQLQEK 144 LEA ++ L + AL+ N + + L+ + + Sbjct: 245 SAKIKTLEAEKAALEARQAEL----EKALEGAMNFSTADSAKIKTLEAEKAALEAEKADL 300 Query: 145 EKRLKSDLGEIKKLKQKVKENEKDIKKHQEALEQFEEWRDES 186 E + + + L++ + + + K+ + ++ EE S Sbjct: 301 EHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKIS 342
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 7e-04 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 10/101 (9%) Query: 20 SYGQYRAAKEQTKQLEIICNTL---RKQYENLLIELRLDKQKLRL------QLAQDLEKI 70 G A Q II T +++ + + + D +RL +L + + Sbjct: 218 QLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNV 277 Query: 71 DARIR-KNADKMHLLKLAYENSFMVLKCIKEHLDEYEKKFP 110 ARI K A + + N+ K IK L E + FP Sbjct: 278 IARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFP 318
>PF03944#delta endotoxin Length = 633 Score = 32.0 bits (72), Expect = 0.003 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLNLCQKPHILALSKIDMA 127 L E+ LNQ + + + A +AEL A+V + + + FLN + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQKYASQFVDLVPLSAKKSQNLN 161 + L +L ++Q Q + L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.047 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMELPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.016 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 9/183 (4%) Query: 224 DEVCSPLRDEMVAMPTNDSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKE 283 D P +E +A + P P N+ E++ Q A E + + Sbjct: 1006 DVPSVPSNNEEIARVDE-APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064 Query: 284 KLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNA 343 A S + AN + E + K+ + +E ++K K +K Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAK----VETEKTQ 1120 Query: 344 KKPRVVEVPVSPQTSNSDETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYSKKTP 403 + P+V VSP+ S ET++ E N V+ + +S T +K+T Sbjct: 1121 EVPKVTS-QVSPKQEQS-ETVQPQAEPARENDPTVNIKE--PQSQTNTTADTEQPAKETS 1176 Query: 404 LNP 406 N Sbjct: 1177 SNV 1179
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 873 bits (2256), Expect = 0.0 Identities = 516/522 (98%), Positives = 518/522 (99%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA ALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETIKQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE ++QRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.005 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTFHQRHDDEEVTEEEKKFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E F K K D + EE+KK L ++ EQ Sbjct: 112 AVNFALMTRDYQE-----FLKTKKLIVDAPDPKELEEQKK--------ALEKEKEAKEQA 158 Query: 84 QKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSSTETKSNKDDNFDEM 142 QK A + K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 159 QK---AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 291 bits (747), Expect = e-102 Identities = 65/283 (22%), Positives = 124/283 (43%), Gaps = 41/283 (14%) Query: 1 MERSLIFKKVRVYSKMLVALGLSSVLIGCAMNPSAETKTPNDAKNQVQTHERIQTSSEYV 60 M+ + FK + K L+ + ++L+GC S N+ ++ H +SE V Sbjct: 1 MKANNHFKDF-AWKKCLLGASVVALLVGC----SPHIIETNEVALKLNYH----PASEKV 51 Query: 61 TPLDFNYPIHIAQAPQNHHVVGILMPRIQVSDNL-KPYIDKFQDALANQIQTIFEKRGYQ 119 LD + +L P Q SDN+ K Y +KF++ +++ I + +GY+ Sbjct: 52 QALD--------------EKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEQILQNQGYK 97 Query: 120 VLRF--QDEKALNAQDKRKIFCVLDLKGWVGILEDLKMNLKDPNNPNL--DTLVDQ---- 171 V+ D+ + K++ + + + G + + D K ++ + P L T +D+ Sbjct: 98 VINVDSSDKDDFSFAQKKEGYLAVAMNGEIVLRPDPKRTIQKKSEPGLLFSTGLDKMEGV 157 Query: 172 --SSGSVWFNFYEPESNRVVHDFAVEVGTF---QAMTYTYKHSNSGGFDSSDSIIHEDLE 226 +G V EP S + F +++ + T S+SGG S+ Sbjct: 158 LIPAGFVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGGLVSTMV----KGT 213 Query: 227 KNKEDAIHKILNRMYAVVMKKAVMELTEENIAKYRDAIDRMKG 269 N DAI LN+++A +M++ +LT++N+ Y+ +KG Sbjct: 214 DNSNDAIKSALNKIFANIMQEIDKKLTQKNLESYQKDAKELKG 256
>FLAGELLIN#Flagellin signature. Length = 507 Score = 28.5 bits (63), Expect = 0.038 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 13/98 (13%) Query: 172 INQAKE-SANNEISTNKTQAIANINEAKNNANNEIS---------NNQTQAITNINEAKE 221 IN AK+ +A I+ T I + +A NAN+ IS N + + E Sbjct: 37 INSAKDDAAGQAIANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSV 96 Query: 222 SATNQINTNKQEVLNNIKKEKTQATSEITE-AKKTAFN 258 ATN N++ L +I+ E Q EI + +T FN Sbjct: 97 QATNGTNSDSD--LKSIQDEIQQRLEEIDRVSNQTQFN 132
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 92.8 bits (230), Expect = 2e-24 Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 10/233 (4%) Query: 14 KVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------ECVDIDVSD 67 K+A ITGA+ GIG A L QG + A+ + + +L E DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 68 SNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFGVNFFALCEVVQFCL 127 S A+ E+ I + D+L+N AG G + EE + F VN + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 128 PLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLEFKPFNIQVCLIEPG 187 + ++ I + S V + Y++SK A ++ L LE +NI+ ++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 188 PVKSNWEKTAFENDERKDSVYALDLEKTKNFYSGVYQNALS-PKAVAQKIVFL 239 +++ + + + ++ + V LE F +G+ L+ P +A ++FL Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLET---FKTGIPLKKLAKPSDIADAVLFL 238
>PF01206#SirA family protein Length = 76 Score = 25.9 bits (57), Expect = 0.017 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Query: 83 IPNLETQQAMREALNGENLEVI-------EDFSAWANEIKKEV 118 +P L+ ++ + GE L V+ +DF +++ + E+ Sbjct: 17 LPILKAKKTLATMNAGEVLYVMATDPGSVKDFESFSKQTGHEL 59
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 29.3 bits (65), Expect = 0.011 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 50 YNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKP 109 ++R ++P E F P+ + + N+ A+EK D ++++ L+ E FEK P Sbjct: 293 HSRSGEQPKGFTESFKAPE---------LGVGNLGASEKSDVFLVVSTLLHCIEGFEKNP 343 Query: 110 ELK 112 E+K Sbjct: 344 EIK 346
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (372), Expect = 1e-45 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKC-----AQKTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.013 Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 25/160 (15%) Query: 30 HNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKKDEKIAEKAEEKKDEKVVEKNATDKEGD 89 +N E EK + N + D+PS +E+IA + DE V Sbjct: 981 YNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIA-----RVDEAPVP--------- 1026 Query: 90 FIDPKEQEESLEDIFSSLNDFQEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQKNQEM 149 P S + N QE K +KNEQ+ + Q R + + Sbjct: 1027 --PPAPATPSETTETVAENSKQE------SKTVEKNEQDATET--TAQNREVAKEAKSNV 1076 Query: 150 LKDLQQNLDQFAQKLESVKNKTLDLQIPKQDGVDEKAYQE 189 + Q N + E+ + +T + + +EKA E Sbjct: 1077 KANTQTN-EVAQSGSETKETQTTETKETATVEKEEKAKVE 1115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.1 bits (221), Expect = 7e-23 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESIKEFLEHLGYEVFCTFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V T N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 66.7 bits (163), Expect = 2e-18 Identities = 26/81 (32%), Positives = 40/81 (49%) Query: 3 SQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLI 62 L+ + + L++S + ++GLLV +FQ TQ+ E TL F K+L V L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 63 LTMPWMTNMLLDYTKTLIKLI 83 L W +LL Y + +I L Sbjct: 62 LLSGWYGEVLLSYGRQVIFLA 82
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (569), Expect = 5e-78 Identities = 63/147 (42%), Positives = 94/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLKMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (337), Expect = 1e-40 Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISLLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + +L PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.4 bits (65), Expect = 0.024 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 13/112 (11%) Query: 174 KENKENKENKENKE-NKENTLENAPTNNKPLKEKKEET----KEKEEETITIGDNTNAMK 228 +E K+ +E K +E K+ L N+ + E+ K +EE+ I D A+ Sbjct: 325 EELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKAL- 383 Query: 229 IVKKDIQKGYKALKSSQ--RKWYCLGICSKKSKLSLMPKEIFNDKQFTYFKF 278 + Q + ALK + R + K+SK +MP EIF+D FTYF F Sbjct: 384 ----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIFDDGTFTYFGF 430
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 29.9 bits (67), Expect = 0.024 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 272 ALFEEAANEPKENVSLNQTPVFAKESANNLVFSHKVSAL---LGVEDLAVIDTKDALLVA 328 +LF P +V++ P A + H VS+ L ++ ++D LL Sbjct: 162 SLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQ 221 Query: 329 HKDKAKDLKA 338 +DL Sbjct: 222 SNTSGRDLND 231
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 89.1 bits (221), Expect = 6e-22 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATNKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEN 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.6 bits (121), Expect = 3e-09 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDSVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIAQ----------MPS-------VMNVGSGVDYSIEEYYEMVAQVLDYKGVFVKD 265 + I P+ V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 362 bits (930), Expect = e-127 Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIVSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKSPNFKNAIQ 186 A++ SA + NGA IERE+ +VL L++P+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKSITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G + +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.026 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.005 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANLIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 552 bits (1423), Expect = 0.0 Identities = 179/582 (30%), Positives = 293/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVLKDD-TILVPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I VP DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGRYKIALKDGANALEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ + L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPVIDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 351 bits (902), Expect = e-123 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 35.9 bits (82), Expect = 8e-05 Identities = 44/207 (21%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 50 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 108 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 109 EEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDIAKEVI 164 + L + E K+Q + + + + + L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 165 LKEVEDSSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 221 + + + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 222 AISKGGVMITSSNGSLDGNLMERFKTL 248 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (288), Expect = 6e-29 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 3 NIRNFSIIAHIDHGKSTLADCLISECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVS 161 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 83.4 bits (206), Expect = 7e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 161 SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 220 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 221 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 277 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 278 KNPTPKPIEGFIPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 337 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 338 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 372 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 32.5 bits (74), Expect = 0.005 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVILTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + VIL+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 41.0 bits (96), Expect = 6e-06 Identities = 58/312 (18%), Positives = 106/312 (33%), Gaps = 57/312 (18%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDNEATPQKETNVNHVKETQRGSLKELLHHKKALMIVFGLTMGGSLCFYTFTVYLKI 270 ++ E + ++ + +L + + T + I Sbjct: 190 KK----EVRIKGHFDIKGI----------ILMSVGIVFFMLFTTSYSISFLIVSVLSFLI 235 Query: 271 FLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVFAIT 320 F+ + + ++ M+ L I + G M+ +K L I Sbjct: 236 FVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIG 295 Query: 321 GLIVTPVVFYGI 332 +I+ P I Sbjct: 296 SVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.7 bits (74), Expect = 0.008 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 13/182 (7%) Query: 202 KENLIDENHNTPNEESFLAIPTPYNTTLNDLEPQEGLVQISPHPPTHYTIYPKRNRFDDL 261 N + +N E+ + T TT N+++ P+ + + R D+ Sbjct: 973 NVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADV---------PSVPSNNEEIARVDEA 1023 Query: 262 TNPTNPPLKEPKQETKEREPMPTKETLTPATPKPATLKPIISAPVMPASAPIIENDNKTQ 321 P P + E + + AT + V + ++ N Sbjct: 1024 PVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVK-ANTQT 1082 Query: 322 NHKAPNHPKKEESPQENTQEEMIKE---NLKEEEKETQDAPNFSPVTPTSTKKPVMVKEL 378 N A + + +E+ T+E E K E ++TQ+ P + ++ V+ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 379 SE 380 +E Sbjct: 1143 AE 1144
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.8 bits (61), Expect = 0.032 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 23 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLAL-----ASLEEVK 77 N+ E+ K E A ++ + T QI + K P+ +L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 78 EIIKSVSYFNNKSKHLISMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 129 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 1e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.2 bits (117), Expect = 6e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 45.0 bits (106), Expect = 1e-07 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 39.2 bits (91), Expect = 1e-05 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 87 TLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 146 T+ P P PP P E P+PEP P+P E K K K + KKV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 147 VEEKKEEKKIVE 158 E+ K + K VE Sbjct: 107 QEQPKRDVKPVE 118 Score = 38.0 bits (88), Expect = 2e-05 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 74 QDPNKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 37.3 bits (86), Expect = 4e-05 Identities = 42/218 (19%), Positives = 75/218 (34%), Gaps = 40/218 (18%) Query: 98 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIV 157 P P P +PEP+P+P PEP K VV EK + K Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------------APVVIEKPKPKPKP 98 Query: 158 EQKVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGE 217 + K +KV+++ + KPV E P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSK 144 Query: 218 EFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKI 277 + + + RN + YP A L +G V+F + P+G + +++I Sbjct: 145 PVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQI 193 Query: 278 IIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 315 + M + ++ + +P + ++ I + Sbjct: 194 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 33.0 bits (75), Expect = 0.001 Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 74 QDPNKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.005 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPNKNTPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 31.3 bits (71), Expect = 0.002 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSFL 151 S + Sbjct: 101 SHVV 104
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.019 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1954 bits (5063), Expect = 0.0 Identities = 1155/1258 (91%), Positives = 1199/1258 (95%), Gaps = 6/1258 (0%) Query: 1 MIIPAIVGGIATGTAVGTVSGLLGWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEY 60 +IIPAIVGGIATG AVGTVSGLLGWGLKQAEEANKTPDKPDKVWRIQAG+GFNEFPNKEY Sbjct: 39 VIIPAIVGGIATGAAVGTVSGLLGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEY 98 Query: 61 DLYQSLLSSKIDGGWDWGNAARHYWVKGGQQNKLEVDMKDAVGTYKLSGLRNFTGGDLDV 120 DLY+SLLSSKIDGGWDWGNAARHYWVK GQ NKLEVDM++AVGTY LSGL NFTGGDLDV Sbjct: 99 DLYKSLLSSKIDGGWDWGNAARHYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDV 158 Query: 121 NMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAKNISIDNFVEINNRVGSGAGRKASST 180 NMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAKNI IDNF+EINNRVGSGAGRKASST Sbjct: 159 NMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASST 218 Query: 181 VLTLQASEGITSSKNAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINT 240 VLTLQASEGITS +NAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINT Sbjct: 219 VLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINT 278 Query: 241 SKVTGEVNFNHLTVGDKNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKNQTNNT 300 SKVTGEVNFNHLTVGD NAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYK++ N+ Sbjct: 279 SKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDK 338 Query: 301 PSQSGAKNDKNESAKNDKQESSQNNSNTQVINPPNSTQKTEIQPTQVIDGPFAGGKNTVV 360 PS + N AKNDKQESSQNNSNTQVINPPNS QKTEIQPTQVIDGPFAGGKNTVV Sbjct: 339 PSNTTQNN-----AKNDKQESSQNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVV 393 Query: 361 NIDRINTNADGTIKVGGYKASLTTNAAHLHIGKGGVNLSNQASGRSLLVENLTGNITVDG 420 NI+RINTNADGTI+VGG+KASLTTNAAHLHIGKGG+NLSNQASGRSLLVENLTGNITVDG Sbjct: 394 NINRINTNADGTIRVGGFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDG 453 Query: 421 PLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGID 480 PLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGID Sbjct: 454 PLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGID 513 Query: 481 TGNGGFNTLDFSGVTGKVNINKLITASTNVAVKNFNINELIVKTNGVSVGEYTHFSEDIG 540 TGNGGFNTLDFSGVT KVNINKLITASTNVAVKNFNINEL+VKTNGVSVGEYTHFSEDIG Sbjct: 514 TGNGGFNTLDFSGVTNKVNINKLITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIG 573 Query: 541 SQSRINTVRLETGTRSIFSGGVKFKSGEKLVIDEFYYSPWNYFDARNVKNVEITKKFASS 600 SQSRINTVRLETGTRSI+SGGVKFK GEKLVI++FYY+PWNYFDARN+KNVEIT K A Sbjct: 574 SQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFG 633 Query: 601 TPENPWGTSKLMFNNLTLGQNAVMDYSQFSNLTIQGDFINNQGTINYLVRGGKVATLNVG 660 +PWGT+KLMFNNLTLGQNAVMDYSQFSNLTIQGDF+NNQGTINYLVRGG+VATLNVG Sbjct: 634 PQGSPWGTAKLMFNNLTLGQNAVMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVG 693 Query: 661 NAAAMMFNNDIDSTTGFYKPLIKINSAQDLIKNTEHVLLKAKIIGYGNVSTGTNGISNVN 720 NAAAM F+N++DS TGFY+PL+KINSAQDLIKN EHVLLKAKIIGYGNVS GT+ I+NVN Sbjct: 694 NAAAMFFSNNVDSATGFYQPLMKINSAQDLIKNKEHVLLKAKIIGYGNVSAGTDSIANVN 753 Query: 721 LEEQFKERLALYNNNNRMDTCVVRNTDDIKACGMAIGNQSMVNNPDNYKYLIGKAWKNIG 780 L EQFKERLALYNNNNRMD CVVRNTDDIKACG AIGNQSMVNNP+NYKYL GKAWKNIG Sbjct: 754 LIEQFKERLALYNNNNRMDICVVRNTDDIKACGTAIGNQSMVNNPENYKYLEGKAWKNIG 813 Query: 781 ISKTANGSKISVYYLGNSTPSENGGNTTNLPTNTTNNARSANYALVKNAPFA-HSATPNL 839 ISKTANGSKISV+YLGNSTP+ENGGNTTNLPTNTTN R A+YAL+KNAPFA +SATPNL Sbjct: 814 ISKTANGSKISVHYLGNSTPTENGGNTTNLPTNTTNKVRFASYALIKNAPFARYSATPNL 873 Query: 840 VAINQHDFGTIESVFELANRSKDIDTLYTHSGAQGRDLLQTLLIDSHDAGYARQMIDNTS 899 VAINQHDFGTIESVFELANRS DIDTLY +SGAQGRDLLQTLLIDSHDAGYAR MID TS Sbjct: 874 VAINQHDFGTIESVFELANRSNDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATS 933 Query: 900 TGEITKQLNAATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNNINSFAQR 959 EITKQLN ATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTN+I+SFA+R Sbjct: 934 ANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKR 993 Query: 960 LQALKGQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGASLNNGSNASLYGTSAGVDAY 1019 LQALK QRFASLESAAEVLYQFAPKYEKPTNVWANAIGG SLN+G NASLYGTSAGVDAY Sbjct: 994 LQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAY 1053 Query: 1020 LNGNVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSD 1079 LNG VEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSD Sbjct: 1054 LNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSD 1113 Query: 1080 QSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNF 1139 QSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNF Sbjct: 1114 QSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNF 1173 Query: 1140 KSNSTNKVALSNGSSSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLN 1199 KSNS KVAL NG+SSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLN Sbjct: 1174 KSNSNQKVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLN 1233 Query: 1200 TFKVNATHNPLNTHARVMMGGELKLAKEVFLNLGFVYLHNLISNASHFASNLGMRYSF 1257 TFKVNAT NPLNTHARVMMGGELKLAKEVFLNLGFVYLHNLISN HFASNLGMRYSF Sbjct: 1234 TFKVNATRNPLNTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 121 bits (304), Expect = 3e-36 Identities = 46/117 (39%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 1 MRNIEARK-EKGDKEAKLAFEMCTYRIKKYIGAYMVVLKKVDAIIFTGGLGENYSALRES 59 R++E + GDK A+LA + YR+KK IG+Y + VD I+FT G+GEN +RE Sbjct: 283 FRDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREF 342 Query: 60 VCEGLENLGIALHKPTNDNPGNGLVDLSQPNTKVQILRIPTDKELEIALQTKKVLEK 116 + +GLE LG L K N G +S ++KV ++ +PT++E IA T+K++E Sbjct: 343 ILDGLEFLGFKLDKEKNKVRGEE-AIISTADSKVNVMVVPTNEEYMIAKDTEKIVES 398
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 361 bits (929), Expect = e-127 Identities = 145/282 (51%), Positives = 196/282 (69%), Gaps = 6/282 (2%) Query: 1 MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVI 60 M+ILV+N GSSS+K++L + K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMQEIGNLS 118 KDH + ++ + L G+IKD ++IDA+GHRVV GG+ F + VL+ + V++ I + Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 119 ILAPLHNPANLAGIEFVKKAHPHIPQIAVFDTAFHATMPSYAYMYALPYELYEKYQIRRY 178 LAPLHNPAN+ GI+ + P +P +AVFDTAFH TMP YAY+Y +PYE Y KY+IR+Y Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 179 GFHGTSHHYVAKEAAKFLNIPYEEFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLI 238 GFHGTSH YV++ AA+ LN P E I+ HLGNGSS AA++ GKS+DTSMG TPLEGL Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 239 MGTRCGDIDPTVVEYIAQCANKSLEEVIKILNHESGLKGICG 280 MGTR G IDP+++ Y+ + N S EEV+ ILN +SG+ GI G Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISG 278
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.6 bits (84), Expect = 2e-04 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 9/225 (4%) Query: 284 KKSEKTPIHAKTQTTAQATTPENAPKIPLKTPPLMPLIGANPPPNDNIPTPLEKEEKTQE 343 + Q + N + P+ P A TP E E E Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA---------TPSETTETVAE 1042 Query: 344 ISENKEKTKETSNSAQSAQNTQASDKTSENKSITPKETIKHFTQQLKQEIQEYKPPMSKI 403 S+ + KT E + + Q + E KS T + Q E +E + +K Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 404 SMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSF 463 + + +E KVE + + V +T + + + + + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 464 SQDSSKEQEKEPFKEPFKDQELTPLKENALKSYQENTDHENQETS 508 + + EQ + + N S EN ++ T+ Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Score = 32.0 bits (72), Expect = 0.008 Identities = 44/273 (16%), Positives = 85/273 (31%), Gaps = 30/273 (10%) Query: 2 PSPINPI-QTNANALNGGAKNEDTKNAPKSASKDFSKILNQKISKDKTASKESPNPNALK 60 P+P P T A N +++ + + A++ + + S N + Sbjct: 1028 PAPATPSETTETVAENSKQESKTVEKNEQDATE---TTAQNREVAKEAKSNVKANTQTNE 1084 Query: 61 ATPKDAKALEKTPTPHHQHAKDLVKDQQAPTLKDWLNHPK-THPTAPHETQHETHEHETN 119 ++ E T + A +++ + PK T +P + Q ET + + Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 120 PKTPNETLNKNEKKPNGVTSNAHQTNLASKNP--------------------ITPNHANN 159 P N+ ++ + + A A + P + Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 160 IIKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDHLALKTTQT 219 PT +++ +PK S H N++ ATT N A L T Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPH-----NVEPATTSSNDRSTVALCDLTSTNTNA 1259 Query: 220 PTNHTLAKNDAKNTANLSSVLQSLEKKESHNKE 252 + AK +V Q + + E +N+ Sbjct: 1260 VLSDARAKAQFVALNVGKAVSQHISQLEMNNEG 1292
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 27.3 bits (60), Expect = 0.033 Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 46 TNEGLSQTDAKSHEINLEESPNNPNTPNDEKASHNEEDRNNALSQNLDAQDS 97 N+ N ++PNNP+ PN+ +N ++ +N + N D D+ Sbjct: 284 ANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNPDA 335
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 32.1 bits (73), Expect = 0.001 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 136 GVVPEEALEIYSQISETCKRLKLKGLMCIGAHADDEKKIEKSF 178 G P+ L ++ Q+ + LM A A+ I + Sbjct: 132 GFQPDRVLTVWQQL-RAMANVGEMTLMSHFAEAEHPDGISGAM 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.8 bits (145), Expect = 4e-12 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 181 GEVLFLDDSRTARKTLKNHLSKLGFSITEAVDGEDGLDKLEMLFKKYGDDLRKHLKFIIS 240 +L DD R L LS+ G+ + + + +++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----------AGDGDLVVT 53 Query: 241 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKF 299 DV MP + + L +++K +PV+ S+ +A +A E GA YL K FD + Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 300 TEEISKILD 308 I + L Sbjct: 112 IGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.6 bits (134), Expect = 4e-10 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 680 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 739 +L DD + R ++ + L G + +N + GD D ++ D+ MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDENAF 63 Query: 740 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 799 ++K +LP++ ++++ T ++ E G +Y+ KP+ L ++ R++ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 800 E 800 Sbjct: 122 P 122
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 430 bits (1106), Expect = e-148 Identities = 166/575 (28%), Positives = 287/575 (49%), Gaps = 69/575 (12%) Query: 10 RLILAIALSFLFIALYSYFFQKPNKTTTQTTKQETTNNHTTTSPNAPNAQHFGTTQTTPQ 69 R +L IAL F+ ++ Q + + + T TTT+ + Q + Q Sbjct: 5 RNLLVIALLFVSFMIW----QAWEQDKNPQPQAQQTTQTTTTAAGSAADQG---VPASGQ 57 Query: 70 ENLLSTISFEHARIEIDSLG-RIKQVYLKDKKYLTPKQKGFLEHVG--HLFSSKEN---- 122 L+ ++ + + I++ G ++Q L P L L + Sbjct: 58 GKLI-SVKTDVLDLTINTRGGDVEQALL-------PAYPKELNSTQPFQLLETSPQFIYQ 109 Query: 123 AQPPL--KEFPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDL 178 AQ L ++ P A+ +PL +N A G NE V D Sbjct: 110 AQSGLTGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDA 156 Query: 179 GALSIIKTLTF----YD-DLHYDLKIAFKSPDNLIPSYVITNGYRPVADLDS-------Y 226 + KT Y +++Y+++ A + P + + LD+ + Sbjct: 157 AGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALH 216 Query: 227 TFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALI 283 TF G D+K EK + D + + S +++ + +YF T + G Sbjct: 217 TFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFY 275 Query: 284 DSEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLI 332 + +G N + I K++ N ++GP+ + A++P L ++YG + Sbjct: 276 TANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWL 333 Query: 333 TFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRIILYPLSYKGMVSMQKLKELAPKMKEL 392 F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L PK++ + Sbjct: 334 WFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAM 393 Query: 393 QEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKNSEWIL 452 +E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + L Sbjct: 394 RERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFAL 453 Query: 453 WIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFPAGL 512 WIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP+GL Sbjct: 454 WIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGL 513 Query: 513 VLYWTTNNILSVLQQLIINKVLENKKRMHAQNKKE 547 VLY+ +N+++++QQ +I + LE K+ +H++ KK+ Sbjct: 514 VLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.009 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Query: 54 AGVKESVKEVKEESVKETNTKENHQNNIEEKKQKLETETPQEE-KITPKPPKKNLKEES 111 A KE + KET T E +E+K K+ETE QE K+T + K + E+ Sbjct: 1086 AQSGSETKETQTTETKETATVE------KEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 32.5 bits (74), Expect = 0.004 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDLILGVFDLSKPLEKEDFNLIDALN 318 + KV +IDT G + ++ R SL L+ L++ D + + L AL Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVLDGAILLISAKDGVQAQTR---ILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 30.4 bits (68), Expect = 0.009 Identities = 14/60 (23%), Positives = 22/60 (36%) Query: 155 SKSMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDTEIKNAL 214 + + D L P + +A + G E + YQ + FD + IKN L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.4 bits (76), Expect = 0.001 Identities = 29/184 (15%), Positives = 75/184 (40%), Gaps = 12/184 (6%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GILFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIAERLKGVKKKKGVELFHKAN----KISGHQALDSDILEKGGI 216 + A LA+ ++ + + R + + + L + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVK-RGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGI 206 Query: 217 DN-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQV 274 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 207 PNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRF 266 Query: 275 YKLP 278 ++P Sbjct: 267 QRVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.029 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217