>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.021 Identities = 32/169 (18%), Positives = 66/169 (39%), Gaps = 26/169 (15%) Query: 72 ELEELQQTITTDKTQQQLLEQDNIDFELQSALQNDLKDLEHLSDNQNKDDKEQTIQKSFE 131 ++ ++ +TI + ++ + + ID + ++ D+ L + K Sbjct: 668 DVSDVSETI---NSIREDVFKATIDAYIPPQSLEEMWDIPGLQERL----KNDFDLDLPI 720 Query: 132 QDLEDLQNDKLNLEIKESINKQDDKNYQNKEQLNTETKENIRENSKN-----------SH 180 + D + + ++E I Q + YQ KE++ E +R K H Sbjct: 721 AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGA--EMMRHFEKGVMLQTLDSLWKEH 778 Query: 181 LIPITNLKNFLHNRRENFKATQQDLPSEKQKKYSDKLFKKELLEYAKHN 229 L + L+ +H R Q+D P ++ K+ S +F +LE K+ Sbjct: 779 LAAMDYLRQGIHLR----GYAQKD-PKQEYKRESFSMF-AAMLESLKYE 821
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 32.4 bits (73), Expect = 0.034 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Query: 799 TLNAFNAPDSQAIDLNAISNSVGLNPTQESK--ITDNSVELNNAQEQTAQEQDTQENAQT 856 T AF P++Q ++++A N++ P+ E K I + + + A++Q + NAQ Sbjct: 287 TQEAFKNPENQKVNIDANGNAI---PSGELKDDIVEQIAQQAKEAGEVARQQAVESNAQA 343 Query: 857 TLK---QETKEQE 866 + Q + QE Sbjct: 344 QQRYEDQHARRQE 356
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 99 bits (249), Expect = 5e-27 Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 18/202 (8%) Query: 94 AERKIGDWIFSSAVFFFALAFIEAIIIICLLPLKEKVPYLVTFSNATQNFAIVQR--ADK 151 +K+ + A ALA + + L PLK PY++T T +I + D Sbjct: 30 RSKKLAWVV---AGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDA 86 Query: 152 SIRANQALVRQLVASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEH- 208 +I ++A+ + +A+YV RE + +E + + + SA D + + ++ Sbjct: 87 TITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSRFYKTDNP 142 Query: 209 ----SIYTNINLTRKVSIINIALISKTQANIEISAQLFNKEKLESEKRYRIIMTFEFEPI 264 +I N V I ++ + A + + + ++ + ++ + Sbjct: 143 QSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATIKYKVDGT 200 Query: 265 EIDTKSVPLNPTGFIVTGYDVT 286 NP G+ V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1044 bits (2701), Expect = 0.0 Identities = 353/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.006 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 16 DELTALLSNAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEDIKENKELLEDKELSE 75 + LT +SN + +S+ K L+EL K+Q E + + LED++E + K++ E Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENE------LDQMERLEDMQEQAQANALKQIEE 234 Query: 76 LAKEELKILEIQKSELETAIKQLLIPKDPNDD 107 L K++ + Q+++ + +IK K P D+ Sbjct: 235 LNKKQAEEAVRQRAKDKISIKTDKSQKSPEDN 266
>FLAGELLIN#Flagellin signature. Length = 507 Score = 33.5 bits (76), Expect = 0.002 Identities = 30/245 (12%), Positives = 68/245 (27%), Gaps = 21/245 (8%) Query: 3 KSFKKLGFVSLAASSVLLGSMNATDLETYAALQKPSHVFDNYAKKDSGNSGTTHTTKNET 62 + + + A A++ K + T Sbjct: 238 TDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNG 297 Query: 63 PDSSAPPTKKDETSGSGDKNQHTVSSGTPTPSTSGVASQLVKDTTTVNNLKSVSVSGMNT 122 S+ +K + + S+ V + +V T ++ K+ + S + Sbjct: 298 KVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDD-KTKNESAKLS 356 Query: 123 TLSGVETMSQQSATIGTLLNSSTDLSSAIPNAQGLSSAFGALESAQNTLKGYLDSSSATI 182 L + +S + + + G + S +TL +++ Sbjct: 357 DLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKK- 415 Query: 183 GQLTNGSNAVVGALDKAINQVDMALADLSATDTQKTQAVTLATTDSSATTDAINFLNALK 242 + + ++D A+++VD + L A + AI L Sbjct: 416 -----STANPLASIDSALSKVDAVRSSLGAIQNR--------------FDSAITNLGNTV 456 Query: 243 TNLTA 247 TNL + Sbjct: 457 TNLNS 461
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.033 Identities = 30/130 (23%), Positives = 55/130 (42%) Query: 3 KKANEEKAPKRAKQEAKAEAAQENKAKESKVKKAKTKESKFKEAKAKELVPVKKLSFNEA 62 K+ E+K ++EAK +A + K K K K+ + K E + + LS N+ Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKN 198 Query: 63 LEELFANSLSDCVSYESIIQISTKVPTLAQIKKIKELCQKYQKKLVSSSEYAKKLNAIDK 122 L EL + + ++ + +K+I+EL +K ++ V K DK Sbjct: 199 LSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRAKDKISIKTDK 258 Query: 123 IKKTEEKQKV 132 +K+ E + Sbjct: 259 SQKSPEDNSI 268
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.4 bits (105), Expect = 4e-07 Identities = 53/271 (19%), Positives = 102/271 (37%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKKALVGGLIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + +++A G + + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLK-----NRSLRKKSVKKEESAFKIPFHL- 200 + ++ + + F+ L R ++ ++F+ + Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTIAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + T G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 75.9 bits (186), Expect = 2e-16 Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 17/260 (6%) Query: 192 EEEKEEIKEEEKEEIKEEEKEEIKEEEKEEIKEEEKEEVKEEIKETPKEEEEPKEET-QE 250 + EE + E E E E K+E K K E++ E T Q Sbjct: 1006 DVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQN 1065 Query: 251 GEALKDEEVSKELETQ-------GEIKKETQEEQTKEQEPVKEQEPIKEETQEIKEEKQE 303 E K+ + + + TQ G KETQ +TKE V+++E K ET++ +E + Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV 1125 Query: 304 KTQDSPSAQELEAMQELVKEIQE-----NSNGQEDKKETQEKTETPQEKETQELEIPKEK 358 +Q SP ++ E +Q + +E N + + T TE P ++ + +E P + Sbjct: 1126 TSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Query: 359 TQESAETPQEKETQELEIPKEK----TQESAETPQEKETQENAETPQELETPQEKTQEKT 414 + E E P ES+ P+ + + P +E + +++ Sbjct: 1186 STTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Query: 415 QEDHYESIEDIPEPVMAKAM 434 + V++ A Sbjct: 1246 TVALCDLTSTNTNAVLSDAR 1265 Score = 63.9 bits (155), Expect = 9e-13 Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 20/283 (7%) Query: 226 EKEEVKEEIKETPKEEEEPKEETQEGEALKDEEVSKELETQGEIKKETQEEQTKEQEPVK 285 E E+ + + T + +EE+++ E + ++ E V Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEA--PVPPPAPATPSETTETVA 1041 Query: 286 EQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQEDKKETQEKTETPQ 345 E + +T E E+ +T EA + Q N Q ++T+T + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS--GSETKETQTTE 1099 Query: 346 EKETQELEIPKEKTQESAETPQEKETQELEIPK----EKTQESAETPQEKETQENAETPQ 401 KET +E ++ E+ +T + + PK E Q AE +E + N + PQ Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 402 ELETPQEKTQEKTQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKTPNNENDTETPKES 461 Q T T++ E+ ++ +PV +V + P N T Sbjct: 1160 S----QTNTTADTEQPAKETSSNVEQPVTESTTVNTGN----SVVENPENTTPATTQPTV 1211 Query: 462 VIKTPQETPQESVETPQESVETPQESVETPKESDKTSSPLELR 504 E+ + + SV + +VE S S + L Sbjct: 1212 N----SESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250 Score = 63.5 bits (154), Expect = 1e-12 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 12/235 (5%) Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEIKEEEKEEIKEEEK--------EEIKEEEKEEIK 199 EA V + K+E K EK E E +E K K + Sbjct: 1022 EAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQ 1081 Query: 200 EEEKEEIKEEEKEEIKEEEKEEIKEEEKEEVKEEIKETPKEEEEPKEETQEGEALKDEEV 259 E + E KE E KE E++E+ K E ++T + + + + + E + + Sbjct: 1082 TNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 260 SKELETQGEIKKETQEEQTKEQEPVKEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQE 319 E + + +E Q++ ++P KE + +++ E T + ++ E Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST----TVNTGNSVVE 1197 Query: 320 LVKEIQENSNGQEDKKETQEKTETPQEKETQELEIPKEKTQESAETPQEKETQEL 374 + + E+ K + + + + E S+ +L Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDL 1252 Score = 58.2 bits (140), Expect = 6e-11 Identities = 51/271 (18%), Positives = 99/271 (36%), Gaps = 35/271 (12%) Query: 274 QEEQTKEQEPVKEQEPIKEETQEIKEEKQEKTQ-----DSPSAQELEAMQ-ELVKEIQEN 327 + QT + + I+ + + +E + P A + E V E + Sbjct: 987 KRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQ 1046 Query: 328 SNGQEDKKETQEKTETPQEKETQELEIPK--------EKTQESAETPQEKETQELEIPKE 379 + +K E T Q +E + E Q +ET +E +T E + Sbjct: 1047 ESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET-KETQTTETKETAT 1105 Query: 380 KTQESAETPQEKETQENAETPQELETPQEKTQEKTQEDHYESIEDIPEPVMAKAMGEELP 439 EKE + ET + E P+ +Q +++ E+++ EP E P Sbjct: 1106 ---------VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR-----ENDP 1151 Query: 440 FLNEAVAKTPNN-ENDTETPKESVIKTPQETPQESVETPQESVETPQESVETPKESDKTS 498 +N ++ N DTE P + +T Q T +V T VE P+ + + Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAK---ETSSNVEQP--VTESTTVNTGNSVVENPENTTPAT 1206 Query: 499 SPLELRLNLQDLLKSLNQESLKNLLENKTLS 529 + + + K+ ++ S++++ N + Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 54.7 bits (131), Expect = 8e-10 Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 8/194 (4%) Query: 142 ENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEIKEEEKEEIKEEEKEEIKEEEKEEIKEE 201 E + +E +N + T + E KE + E KE E +E+ K E E+ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE-TEK 1118 Query: 202 EKEEIKEEEKEEIKEEEKEEIKEEEKEEVKEEIKETPKEEEEPKEETQEGEALKDEEVSK 261 +E K + K+E+ E ++ + + + + KE + T + E Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAK----- 1173 Query: 262 ELETQGEIKKETQEEQTKEQEPVKEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELV 321 ET +++ E T + P + ++ + P + +++ + Sbjct: 1174 --ETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 322 KEIQENSNGQEDKK 335 ++ + D+ Sbjct: 1232 HNVEPATTSSNDRS 1245
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (483), Expect = 8e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDA 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.010 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (504), Expect = 2e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 27.6 bits (61), Expect = 0.027 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 128 NKSVYQLVEMAIGAYNGG-MKHDPNGAYVKKFRCIYSQVRYNE 169 N+S Y VE Y G + GAYV ++ ++ ++ Y++ Sbjct: 451 NRSEY--VETTSTEYTSGKINLSHQGAYVAQYEILWDEINYDD 491
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.0 bits (93), Expect = 9e-05 Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 3/166 (1%) Query: 701 AKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKK 760 ++ + + ++KT + ++ T + R++ +EAK +VKA A++ E K Sbjct: 1034 SETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093 Query: 761 ECEKLLTPEARKLLEEE-AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKS 819 E + T E + +EE AK + + + K+E + + P+A+ E Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 820 AKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEQQALDCLKNAKTE 865 + SQ T A+ ++ K + + + + N+ E Sbjct: 1154 NIK--EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Score = 37.0 bits (85), Expect = 0.001 Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 31/194 (15%) Query: 767 TPEARKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSAKAYLDC 826 P ++ + + ++KT + ++ T + ++ +EAK + KA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 827 VSQAKTEAEKKECEKLLTPEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAK 886 A++ +E KE + T E + +++ AK E EK + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKT---------------QE 1121 Query: 887 ESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKEC 946 + + ++E + + E + ++E + SQ T A+ ++ Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ----------SQTNTTADTEQP 1171 Query: 947 EKLLTPEARKLLEE 960 K + + + E Sbjct: 1172 AKETSSNVEQPVTE 1185 Score = 36.6 bits (84), Expect = 0.001 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 25/265 (9%) Query: 898 RARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKL 957 + NE+ + E + P A ++ + + ++KT + ++ T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT--PSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 958 LEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDAEKKRCA 1017 +EAK ++KA A++ E KE + T E + +++ AK + EK + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE------KAKVETEKTQEV 1122 Query: 1018 KDLPKDLQKKVLAKESVKAYLDCVSRARNEKERKACEKLLTPEAKKLLEEAKESLKAYKD 1077 KV ++ S K + ++E + E + ++E + D Sbjct: 1123 --------PKVTSQVSPK-------QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167 Query: 1078 CLSQARNEEERRACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPE 1137 Q E + + V+N N E K Sbjct: 1168 -TEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNS-ESSNKPKNRHRR 1225 Query: 1138 ARKFLAKQVLSCLEKAKNEEERKAC 1162 + + + V + + C Sbjct: 1226 SVRSVPHNVEPATTSSNDRSTVALC 1250 Score = 34.7 bits (79), Expect = 0.005 Identities = 28/187 (14%), Positives = 69/187 (36%), Gaps = 4/187 (2%) Query: 499 KARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 556 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 557 ESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKNEAEKKE 616 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 617 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQARTEAEKKECEKLLTPEAKKLLEQQALDC 674 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 675 LKNAKTE 681 N+ E Sbjct: 1191 TGNSVVE 1197 Score = 33.1 bits (75), Expect = 0.015 Identities = 38/217 (17%), Positives = 85/217 (39%), Gaps = 7/217 (3%) Query: 555 AKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDC--VSQAKNEA 612 ++ + ++ ++KT EK E + T + + +EAK +VKA V+Q+ +E Sbjct: 1034 SETTETVAENSKQESKTV-EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 613 EKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQARTEAEKKECEKLLTPEAKKLLEQQAL 672 ++ + + +K E+AK + + + K+E + + P+A+ E Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 673 DCLKNAK----TEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL 728 +K + T AD ++ K+ ++++ V +V V + + Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 729 TPEARKLLEEAKESVKAYKDCVSRARNEKEKKECEKL 765 + + K + SV++ V A + L Sbjct: 1213 SESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 32.0 bits (72), Expect = 0.030 Identities = 32/243 (13%), Positives = 77/243 (31%), Gaps = 11/243 (4%) Query: 607 QAKNEAEKKECEKLLTP-------EAKKKLEEAKKSVKAYLDCVSQARTEAEKKECEKLL 659 + NE + E + P E + + E K ++ Q TE + E Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 660 TPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQAKTEA 719 ++ Q + ++ + + ++K+ AK + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 720 EKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEEEAK 779 K+E + + P+A E + K+ S+ + ++ K + + + E Sbjct: 1131 PKQEQSETVQPQAEPAREN--DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 780 ESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSAKAYLDCVSQAKTEAEKKEC 839 + + + T A + + K ++S ++ V A T + + Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPK--NRHRRSVRSVPHNVEPATTSSNDRST 1246 Query: 840 EKL 842 L Sbjct: 1247 VAL 1249
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 867 bits (2242), Expect = 0.0 Identities = 512/522 (98%), Positives = 516/522 (98%), Gaps = 1/522 (0%) Query: 1 MGQAFFKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 MGQAFFKKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKKEKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDK+EKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EETIKQRAKDKISIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EE ++QRAKDKISIKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTRNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLT+NYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (300), Expect = 3e-35 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMVLNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + L A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.011 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTLHQRHDDEEVTKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K K + D +E+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSVQKKAAKHKGLQELNEINANPLNDNPNSNSSAETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.007 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.7 bits (79), Expect = 0.001 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 470 ENIKIALKNSSENNSALEVVKELKFPSLK---PKPTTETTAELKEKETKEKEVQENDTKE 526 NI+ + + NN + V E P P TTET AE ++E+K E E D E Sbjct: 1001 NNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE 1060 Query: 527 IQETQPKEAPTALQEFMAN-HSNLIEEIKSEFE 558 + A A AN +N + + SE + Sbjct: 1061 TTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.013 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIARKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 25.8 bits (56), Expect = 0.033 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 10 YTQYSEKQLFNFLNSIKTKQKRALEKLKEIQAQKQ-RIKKALQFKALHLTENGYTIEEER 68 Y + EK FN + + + +LEK E++ Q ++ K FK + L E G E+ Sbjct: 134 YFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPT 193 Query: 69 EILARAKDTKN 79 +L K KN Sbjct: 194 PLLIHLKLPKN 204
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 100 bits (251), Expect = 3e-31 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 3 ALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAIN 62 A+ FDL + L+K + + + Y +++ + GFE Q S Y + N +V + +N Sbjct: 7 AINFDLSTKSLEKYF-KDTREPYSLIKKFMLENGFEHRQYSGYTSKEPIN-ERRVIRIVN 64 Query: 63 KLS-QIEWFKKSVGDIRAFKVEDFSDFTEIVKS 94 KL+ + W + V + ++ + E ++ Sbjct: 65 KLTKKFTWLGECVKEFDITEIGEQYSLKETIQD 97
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 27.8 bits (61), Expect = 0.031 Identities = 12/33 (36%), Positives = 21/33 (63%) Query: 80 IENIFANEKEDTTYIITSYFNKEELFEKKPELK 112 + N+ A+EK D ++++ + E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (373), Expect = 8e-46 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 22 NMDKETVAGDVSAKTVQSAPVSTETVQEKQEPKEEPKQEPAPVVEEKPAVESGTIIASIY 81 D ++ VS + Q P P PAP V+ K T+ + + Sbjct: 177 RPDNGMLSLGVSYRFGQGEAA----------PVVAPAPAPAPEVQTK----HFTLKSDVL 222 Query: 82 FDFDKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVK 138 F+F+K +K Q LD++ + V++ G TD GS YNQ L +R SV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 139 NALVIKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYRENRRVDVKL 181 + L+ KG+ D I GE+ P K R +C +RRV++++ Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.9 bits (64), Expect = 0.027 Identities = 20/148 (13%), Positives = 37/148 (25%), Gaps = 9/148 (6%) Query: 27 LERHNKEAEKILLDLGKKNEQVIDLNLEDLPSDEKAVEKAVEKVEEKKDEKVAEKNATDK 86 LE+ + A K + L E + + E Sbjct: 160 LEKALEGAMNFSTADSAKIKT---LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 216 Query: 87 EGDFIDPKEQEESLENIFSSL-NDFQEKTDTNAQKDEQKNEQEEEQRRLKEQQRLRKNQK 145 E + ++ LE N + + +K E Q L++ N Sbjct: 217 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 276 Query: 146 NQEM-----LKGLQQNLDQFAQKLESVK 168 + L+ + L+ LE Sbjct: 277 TADSAKIKTLEAEKAALEAEKADLEHQS 304
>PF07675#Cleaved Adhesin Length = 1358 Score = 31.2 bits (70), Expect = 0.004 Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 7/105 (6%) Query: 69 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSQDENKRGELMLKNALESVV---GLYDY 125 VI T F SNL A FE + D + ++ VV G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 126 IIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 170 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.0 bits (75), Expect = 0.001 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 70 EPEVQILKDLKPDFIVVVAYGKILPKEVLAIAP 102 EP +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 9e-07 Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 18/170 (10%) Query: 51 RAQYQSHFKMLEQKEEALKEREREQKAQFDDAVKQASALALQDERTKIIEEARKNAFLEQ 110 + Q+ + QKE L ++ E+ + + ++ R + + Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 111 QKGLELLQKELEEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLETEREK 170 LE K +E EL ++++E+++ E A+ + + NE L+ R+ Sbjct: 252 HAVLEQENKYVEAV----NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ- 306 Query: 171 IEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQLQGEVQELAI 220 +L + + +A +S +VQ+L + Sbjct: 307 --------TTDNIGLLTLELAKNEERQQASVIRAPVS-----VKVQQLKV 343
>ENTSNTHTASED#Enterobactin synthetase component D signature. Length = 234 Score = 31.2 bits (70), Expect = 0.003 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 115 TLIPIPPLNEQSAIADIL-SALDNYLHALRALILKKESVKKALSFELLSQRKRLKGFNQA 173 T + P S IL ++L + AL KESV KA S R L GFN A Sbjct: 116 TATELAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKA-----FSDRVTLPGFNSA 170
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 425 bits (1095), Expect = e-146 Identities = 165/572 (28%), Positives = 278/572 (48%), Gaps = 61/572 (10%) Query: 10 RLILAIALSFLFITLYSYFFQKPNKT--TTQTTKQETANNHTATNPNTPNAQNFSVTQTI 67 R +L IAL F+ ++ + Q N QTT+ T +A + P + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGK----- 59 Query: 68 PQENLLSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVGHLFNPKANPQT 125 L ++ + + I++ G + + K L Q L F +A Sbjct: 60 -----LISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGL 114 Query: 126 PLKELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGALTI 183 ++ P A+ +PL +N A G NE V D T Sbjct: 115 TGRDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTF 161 Query: 184 IKTLTFYDDLHYDLQIAFKSSN--------NIIPSYVITNGYRPVADLDS-----YTFSG 230 KT Y + + + N + + P D S +TF G Sbjct: 162 TKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRG 220 Query: 231 VLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEI 287 D+K EK + D + + S +++ + +YF T + G + + Sbjct: 221 AAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANL 279 Query: 288 GTKNPLGFISLKNEA-----------DLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFA 336 G N + I K++ + ++GP+ + A++P L ++YG + F + Sbjct: 280 G--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFIS 337 Query: 337 KGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKELTPKMKELQEKY 396 + +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L PK++ ++E+ Sbjct: 338 QPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERL 397 Query: 397 KGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHD 456 + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHD Sbjct: 398 GDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHD 457 Query: 457 LSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTIFLITFPAGLVLYW 516 LS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP+GLVLY+ Sbjct: 458 LSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYY 517 Query: 517 TTNNILSVLQQLIINKVLENKKRAHAQNKKES 548 +N+++++QQ +I + LE K+ H++ KK+S Sbjct: 518 IVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 31.3 bits (70), Expect = 0.004 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 17 IQASIALNCPIINLQYEVIQTPSKGFLNIGKKEAIILAGVKESV-KAVKEESVKEAHTKE 75 ++ S+ + INL ++VI+ +K + K+ I + ES K V EE K+ + +E Sbjct: 223 VRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQ-YLEE 281 Query: 76 IHQSAEEKKQKLETKT 91 HQ+A E + E KT Sbjct: 282 FHQTALEHPELSELKT 297
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.7 bits (72), Expect = 0.006 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (570), Expect = 4e-78 Identities = 63/148 (42%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLKMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKRKK 171 +Y + ++ Q+D ++ G +G GK + A+ H KR+ Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARAL--HDYGKRRN 188
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 113 bits (285), Expect = 2e-29 Identities = 75/401 (18%), Positives = 150/401 (37%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIVDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKTNLMILDKEKCVIEA--FRFNDRVAKNDILGALPFN-AYEHQEEDLDFKGLLDILE 170 K + + I++ F FN N +G N + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNQIIKRLNIQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINRHESRVVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + + S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGAQEESVLE------------MFMPFKNSKIKRPMSGYEVLYY 334 +E++ + + + + A +E F SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEVIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 VKMQKDAFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.1 bits (78), Expect = 0.001 Identities = 19/104 (18%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 36 KEKHAFILDLN--VPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIVDNDRI-- 91 + ++ + P I L+ + +K + L K+ NAKI+ + ++ DRI Sbjct: 43 RLSFKLLISSSSNYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVV 101 Query: 92 LEITGAKDLAYKSENFILRLEMIPKKTNLMILDK-EKCVIEAFR 134 ++ +L + S + L +E++ + +N+ ++ K + ++++ + Sbjct: 102 IDFESTDELGFNSI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (331), Expect = 8e-40 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISGNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.004 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 193 KEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKPSLMPEE 250 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 251 IFNDKQFTYFKF 262 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSDHQRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.4 bits (118), Expect = 6e-09 Identities = 52/346 (15%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 VLITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNIQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLISRMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYDNIASIPS-----------------VMNVGSGVDYSIEEYYEKVAQVLDYKGAFVKD 265 D I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 148 bits (376), Expect = 4e-49 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIAQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER+ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.016 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESKQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (926), Expect = e-126 Identities = 119/345 (34%), Positives = 190/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSATIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVALALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LNDSKNTQDLDHNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.024 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIIAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAA--IVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.7 bits (72), Expect = 0.007 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMCLNPR----FKPHNGGVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 31.2 bits (70), Expect = 0.010 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 88 SESLKNNAQQQ----NGPSNQALFNLEQSLEILGKLLDLSQQYANQGVIKPLVVDVGKEQ 143 S + K+N+ Q+ NG S+Q LFN ++E D S Y N GV++ Sbjct: 1170 STNFKSNSNQKVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNA 1229 Query: 144 IGITDSMLLVAQNI 157 + + + +N Sbjct: 1230 VSLNTFKVNATRNP 1243
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 557 bits (1437), Expect = 0.0 Identities = 177/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKIKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + ++P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GASKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +++I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 351 bits (902), Expect = e-123 Identities = 122/338 (36%), Positives = 209/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIVKLDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDIV LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.3 bits (83), Expect = 5e-05 Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 14/207 (6%) Query: 50 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 108 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 109 EEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDIAKEVI 164 + L + E K+Q + + + + + L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 165 LKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 221 + ++ + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 222 AISKGGVMITSSNGSLDGNLMERFKTL 248 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 114 bits (287), Expect = 8e-29 Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTFKGENYILNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 119 +F+ EN +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS 161 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 83.4 bits (206), Expect = 7e-19 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 161 SAKAKLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 220 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 221 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 277 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 278 KNPTPKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 337 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 338 FRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVY 372 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.2 bits (65), Expect = 0.021 Identities = 8/40 (20%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAVTG 42 + A + L+ SNN+++ N G+ R + Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.5 bits (92), Expect = 2e-05 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 33/182 (18%) Query: 35 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 94 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 95 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 148 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 149 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 208 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 209 EE 210 ++ Sbjct: 190 KK 191
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.042 Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 3/144 (2%) Query: 17 AFLTLSSWLGNSGLVGRFGVWFAAINKKYFGYLSLINLPYLAWALFLLYRTKNPFTEIVL 76 + + FG + K + I + + L YR+ + Sbjct: 11 YYWYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWL- 69 Query: 77 EKTLGHLLGILSLLFLQSSLLNQGEIGNSTRLFLRPFIGDFGFYALIMLMVVISYLILFK 136 L IL +L + + N++ L FI + L + I + ++ Sbjct: 70 --KLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVV 127 Query: 137 LPPKSVFYPYINKTQSLLKEIYEQ 160 S+ Y + ++ + +Q Sbjct: 128 TFMWSLLYFGWHFFKNYKQAEIDQ 151
>PF07520#Virulence protein SrfB Length = 1041 Score = 28.8 bits (64), Expect = 0.015 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAEDNKIAAIGSGG---NYALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.045 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMELPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF03944#delta endotoxin Length = 633 Score = 30.0 bits (67), Expect = 0.013 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKIQEYQQYNSQFLALVPLSAKKSQNLN 161 + L ++ ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.9 bits (70), Expect = 0.003 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGMIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL + AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 51.1 bits (122), Expect = 1e-09 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 91 PQKPPTPPTPPIPPTPP-KPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVE 141 P P P PIP P P+ KP+PKPKPKPKP K + +K VE Sbjct: 67 PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 46.9 bits (111), Expect = 3e-08 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 84 PKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPKPEPK-KPNHKHKALKKVEK 142 P + P +P P P P P P E P KPKPKPKP+PK + + + V+ Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Query: 143 VEE 145 VE Sbjct: 117 VES 119 Score = 43.1 bits (101), Expect = 5e-07 Identities = 19/60 (31%), Positives = 25/60 (41%) Query: 91 PQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVE 150 +PP P P P E PK P KPKP+PK K +++ K + K V Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVES 119 Score = 40.0 bits (93), Expect = 6e-06 Identities = 17/54 (31%), Positives = 22/54 (40%) Query: 76 PSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPKPEPKK 129 P P+P +PP I PKP KPKP K + +PK + K Sbjct: 63 PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Score = 39.2 bits (91), Expect = 9e-06 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%) Query: 81 PGAPKPTLAGPQKPPTPPTPPIPPTP---PKPIEKPKPEPKPKPKPKPEPKK 129 P + P P P PP KPKP+PKPKP K + + Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Score = 36.9 bits (85), Expect = 6e-05 Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 40/220 (18%) Query: 98 PTPPIPPTPPKPIEKPKPEPKPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKK 157 P PP +P +P EP+P+P+P PEP K VV EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------------APVVIEKPKPKP 96 Query: 158 IVEQKVEQKVEQKKVEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELY 217 + K +KV+++ + KPV E P N T Sbjct: 97 KPKPKPVKKVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAAT 142 Query: 218 GEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDL 277 + + + + RN + YP A L +G V+F + P+G + ++ Sbjct: 143 SKPVTSVASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNV 191 Query: 278 KIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 317 +I+ M + ++ + +P + ++ I + Sbjct: 192 QILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 33.8 bits (77), Expect = 5e-04 Identities = 16/57 (28%), Positives = 23/57 (40%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPKPEPKKP 130 +P P+P P++ P P P PKP K + +PK KP +P Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 121 Score = 31.9 bits (72), Expect = 0.003 Identities = 13/53 (24%), Positives = 17/53 (32%) Query: 75 DPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPKPEP 127 +P P + P P P P K E+PK + KP P Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASP 124
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.6 bits (63), Expect = 0.015 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 60 LFEKYPSVNDLAL-----ASLEEVKEIIQSVSYFNNKSKHLISMAQKVVRDFNGVIPSRQ 114 + K P+ +L L A +E+VKE + + +++ + AQKV+ NG+ PS + Sbjct: 164 MLNKSPNNKELELTKEEFAKVEQVKETLMASERALDET---VQEAQKVLNMVNGLNPSNK 220 Query: 115 KELMSLNGVGQKTANVV 131 ++++ V + +NVV Sbjct: 221 DQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.011 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.038 Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLNVKNLKKTTIDAPNLQLRERQD-LVSLREQISALRYQ 307 + + + +T K +D +LR+ D + L +++ + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 4e-10 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 27 NVKAIQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQEKQAQSDSTEQQLIFAKKQ 86 K I+ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKIGGAVDKNTLESYEFN 108 RY + +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 31.7 bits (72), Expect = 0.002 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 900 bits (2327), Expect = 0.0 Identities = 286/1038 (27%), Positives = 518/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYSLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIKPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHDEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHQLGQFELMSALRKELRS 631 + + E FT + G QN FV LKP +ER + ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENS-AEAVIHRAKMELGK 656 Query: 632 MPEAKGLDTINLSEVALLGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + L G ++ F + + D + L + + + Sbjct: 657 IRDGFVI-PFNMPAIVEL---GTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 279 bits (714), Expect = 6e-78 Identities = 110/407 (27%), Positives = 191/407 (46%), Gaps = 15/407 (3%) Query: 2791 SAGLNTIKS-ANHNAVNWLNALFVAKGGNPLFAPYYLQDTPTKHIVTLMEDVSSALGMLT 2849 S ++T+ + + + L L + + +A + T I + ++ L + Sbjct: 894 SNDIDTLYANSGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIA 952 Query: 2850 KPSLKNNSTDVLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDV 2909 K + L L+ RL LS + F++RL +LK+QRFA + +A +V Sbjct: 953 SLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEV 1011 Query: 2910 ILKYSQRNKLKNNLWATGVGGVSFVGNGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYS 2966 + +++ + + N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS Sbjct: 1012 LYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYS 1071 Query: 2967 GFYER--ITSSKSNNVNVGLYARAFIKKSELTFSVNETWGANKTQISSADTLLSVINQSY 3024 F + +S +NN N G+Y+R F + E F G++++ ++ LL +NQSY Sbjct: 1072 SFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSY 1131 Query: 3025 NYNAWTTNARVNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNVLYSQFKANADP 3084 NY A++ R +YGYDF F +++LKP +G+ Y ++G T + N + Sbjct: 1132 NYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQ----KVALKNGA 1187 Query: 3085 SKKSVLTIDFAFENRHYFNTNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELY 3144 S + + E R+Y+ SYFY G+ ++ + V + R Sbjct: 1188 SSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--L 1244 Query: 3145 NTFASITTGGEVRLFKSFYANVGVGARFGLDYKMINITGNIGMRLAF 3191 NT A + GGE++L K + N+G L + + N+GMR +F Sbjct: 1245 NTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 38.9 bits (90), Expect = 5e-04 Identities = 74/427 (17%), Positives = 142/427 (33%), Gaps = 50/427 (11%) Query: 119 YIGTKNASSTLNHSSIWFGEKGYVGFITGVFKAKDIFITGAVGSGNEWKTGGGAILVFES 178 I T + +N + + G+ G+ + I G+ + W++ G I+ Sbjct: 275 TINTSKVTGEVNFNHLTVGDHNAAQ--AGIIASNKTHI----GTLDLWQSAGLNIIAP-- 326 Query: 179 SNELNTNGAYFQNNRAGTQTSWINLISNNSVNLTNTDFGNQTPNGGFNAMGRKITYNGGI 238 G + N + T+ N ++ + N Q N N+ + + Sbjct: 327 ----PEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSN-TQVINP-PNSAQKTEIQPTQV 380 Query: 239 VNGGNFGFDNVDSNGTTTISGVTFNNNGVLTYKGGNGIGGSITFTNSNINHYKLNLNANS 298 ++G G T ++ N N T + G G S+T ++++ K +N ++ Sbjct: 381 IDGPFAG------GKNTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGGINLSN 433 Query: 299 VTFNNSALGSMPNGNINTIGNAYILNASNITFNNLTFNGGWFVFNRSDAHVNFQGATTIN 358 S L GNI G + NN G + S A+ F+ T Sbjct: 434 QASGRSLLVENLTGNITVDGPLRV--------NNQV---GGYALAGSSANFEFKAGTDTK 482 Query: 359 NPTSPFVNMSAKVTINPNAIFNIQNYTPSIGSAYTLFSMKNGSIAYNDVSNLWNIIRLKN 418 N T+ F N + + I + F+ + ++ V+N NI +L Sbjct: 483 NGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNINKL-- 536 Query: 419 TQATKDNSKNATSNNNTHTYYVTYNLGGTLYNFRQIFSPNSIVLQSIYYGANNLYYTNSV 478 A+ + + + N ++G + I S + I + G ++Y Sbjct: 537 ITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGG-- 594 Query: 479 NIHDNVFNLKDIKDDRADAIFYLNGLNTWNYTNARFTQTYSGKNSALVFNATTPWANGSI 538 K + + +Y WNY +AR + N +PW + Sbjct: 595 ------VKFKGGEKLVINDFYY----APWNYFDARNIKNVEITNKLAFGPQGSPWGTAKL 644 Query: 539 PKSNSTV 545 +N T+ Sbjct: 645 MFNNLTL 651 Score = 35.4 bits (81), Expect = 0.005 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 702 SYSFDGANNIFNEDKFNGGSFNFNHAEQTNAFNNNSFNGGSFSFNAKQVDFNHNLFNGGV 761 SYS + + E FN + ++A Q +N + G+ + N G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 762 FNF---NNTPKASFTDDAFNVNNQFKING-TQTDFTFNKG 797 + + + + + + N TQ N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.8 bits (69), Expect = 9e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSEQKSGFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 292 bits (748), Expect = e-105 Identities = 173/175 (98%), Positives = 174/175 (99%) Query: 1 MKNQVKKILGMSVIAAMVIAGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVI GCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175