>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.034 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 50.8 bits (121), Expect = 3e-09 Identities = 49/197 (24%), Positives = 85/197 (43%) Query: 2 NALKNSQQTLKNEKAVLTNKNADLSKDKENLTKANTDLKAEKENLTKANAELTTEKDDLT 61 A +TL+ EKA L + ADL K E +T A+ + L A L + +L Sbjct: 137 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 196 Query: 62 KANAELIEKNKELTDQVGLLKGQIKSLEQSQQVLKNEKDGLLKDKDKLTEKNKTLTTEKD 121 KA + + + ++ L+ + +L + L+ +G + + K KTL EK Sbjct: 197 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 122 NLTKANAELTTEKDNLNNQLNASQKQVKELEQSQQVLENEKDELLKEKENLTTDLSNAKS 181 L AEL + N A ++K LE + LE EK +L + + L + + + Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRR 316 Query: 182 QVIQANQEKNELEQKHA 198 + + + K +LE +H Sbjct: 317 DLDASREAKKQLEAEHQ 333 Score = 48.5 bits (115), Expect = 2e-08 Identities = 41/196 (20%), Positives = 75/196 (38%) Query: 2 NALKNSQQTLKNEKAVLTNKNADLSKDKENLTKANTDLKAEKENLTKANAELTTEKDDLT 61 L+ + L+ +A L + L+AEK L A+L + Sbjct: 179 KTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 238 Query: 62 KANAELIEKNKELTDQVGLLKGQIKSLEQSQQVLKNEKDGLLKDKDKLTEKNKTLTTEKD 121 + K K L + L+ + LE++ + N L + L EK Sbjct: 239 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Query: 122 NLTKANAELTTEKDNLNNQLNASQKQVKELEQSQQVLENEKDELLKEKENLTTDLSNAKS 181 +L + L + +L L+AS++ K+LE Q LE + +++L DL ++ Sbjct: 299 DLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASRE 358 Query: 182 QVIQANQEKNELEQKH 197 Q E +LE+++ Sbjct: 359 AKKQLEAEHQKLEEQN 374 Score = 37.4 bits (86), Expect = 8e-05 Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 7/214 (3%) Query: 2 NALKNSQQTLKNEKAVLTNKNADLSKDKENLTKANTDLKAEKENLTKANAELTTEKDDLT 61 A +TL+ EKA L + ADL K E +T A+ + L A L + +L Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 62 KANAELIEKNKELTDQVGLLKGQIKSLEQSQQVLKNEKDGLLKDKDKLTEKNKTLTTEKD 121 KA + + + ++ L+ + +LE + L+++ L ++ L K Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 122 NLTKANAELTTEKD-------NLNNQLNASQKQVKELEQSQQVLENEKDELLKEKENLTT 174 L + +L + +L L+AS++ K+LE Q LE + +++L Sbjct: 327 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 386 Query: 175 DLSNAKSQVIQANQEKNELEQKHAPYKKLERLYE 208 DL ++ Q + E K A +KL + E Sbjct: 387 DLDASREAKKQVEKALEEANSKLAALEKLNKELE 420
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.2 bits (83), Expect = 7e-05 Identities = 31/202 (15%), Positives = 57/202 (28%), Gaps = 10/202 (4%) Query: 13 QVREELEARISELEDENENLTNENTRLLASKEQLTKENAELLREKDNLIKENTELKTEND 72 + E + + + L E L A K L K + + L+ E Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 73 KLNHQIIALTKERDSLKYERAQLQDAHGFLEELCANLEKDNQHLTDKLRKLESAQKNLEN 132 L + L+ + LE + L + LE A + N Sbjct: 187 A-------LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMN 239 Query: 133 SNDQLLQAKEKIAKENTELEREMARLKSLEATDKSELDLQNRRFKSA---IEDLKRQNRK 189 + + + E LE A L+ + + + K+ L+ + Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 190 LEEENIALKERVDGLKEQLSKQ 211 LE ++ L L+ L Sbjct: 300 LEHQSQVLNANRQSLRRDLDAS 321 Score = 33.5 bits (76), Expect = 5e-04 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 3/203 (1%) Query: 16 EELEARISELEDENENLTNENTRLLASKEQLTKENAELLREKDNLIKENTELKTENDKLN 75 + L+ EL +E N + + S + + EL K +L K + + Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 76 HQIIALTKERDSLKYERAQLQDAHGFLEELCANLEKDNQHLTDKLRKLESAQKNLENSND 135 +I L E+ +L +A L+ A + L + LE+ Q LE + + Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 136 QLLQAKEKIAKENTELEREMARLKSLEAT---DKSELDLQNRRFKSAIEDLKRQNRKLEE 192 + + + LE E A L + +A + + I+ L+ + LE Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 193 ENIALKERVDGLKEQLSKQPKPQ 215 L++ ++G + Sbjct: 261 RQAELEKALEGAMNFSTADSAKI 283 Score = 32.7 bits (74), Expect = 0.001 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 3/196 (1%) Query: 16 EELEARISELEDENENLTNENTRLLASKEQLTKENAELLREKDNLIKENTELKTENDKLN 75 + LEA + L +L + + + L EK L EL+ + Sbjct: 144 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 203 Query: 76 HQIIALTKERDSLKYERAQLQDAHGFLEELCANLEKDNQHLTDKLRKLESAQKNLENSND 135 + A + + +L+ E+A L LE+ + + K++ LE+ + LE Sbjct: 204 NFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQA 263 Query: 136 QLLQAKEKIAKENTELEREMARLKSLEATDKSELDLQNRRFKSAIEDLKRQNRKLEEENI 195 +L +A E +T ++ L++ +A ++E + + + + R L+ Sbjct: 264 ELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASRE 323 Query: 196 A---LKERVDGLKEQL 208 A L+ L+EQ Sbjct: 324 AKKQLEAEHQKLEEQN 339 Score = 29.6 bits (66), Expect = 0.009 Identities = 25/145 (17%), Positives = 51/145 (35%) Query: 15 REELEARISELEDENENLTNENTRLLASKEQLTKENAELLREKDNLIKENTELKTENDKL 74 + ELE + + + + + L A K L A+L + + + +T + L Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 75 NHQIIALTKERDSLKYERAQLQDAHGFLEELCANLEKDNQHLTDKLRKLESAQKNLENSN 134 + AL + L+ + LE + L + LE + L + Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANR 311 Query: 135 DQLLQAKEKIAKENTELEREMARLK 159 L + + + +LE E +L+ Sbjct: 312 QSLRRDLDASREAKKQLEAEHQKLE 336 Score = 27.7 bits (61), Expect = 0.044 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 7/202 (3%) Query: 14 VREELEARISELEDENENLTNENTRLLASKEQLTKENAELLREKDNLIKENTELKTENDK 73 A+I LE E L L + E + + L E L+ E Sbjct: 240 FSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 74 LNHQIIALTKERDSLKYERAQLQDAHGFLEELCANLEKDNQHLTDKLRKLESAQKNLENS 133 L HQ L R SL+ + ++A LE ++Q L ++ + E+++++L Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAK-------KQLEAEHQKLEEQNKISEASRQSLRRD 352 Query: 134 NDQLLQAKEKIAKENTELEREMARLKSLEATDKSELDLQNRRFKSAIEDLKRQNRKLEEE 193 D +AK+++ E+ +LE + ++ + + +LD K + L+ N KL Sbjct: 353 LDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAAL 412 Query: 194 NIALKERVDGLKEQLSKQPKPQ 215 KE + K ++ + Q Sbjct: 413 EKLNKELEESKKLTEKEKAELQ 434
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1046 bits (2706), Expect = 0.0 Identities = 356/569 (62%), Positives = 445/569 (78%), Gaps = 4/569 (0%) Query: 3 KISRKEYASMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR YA+M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGLKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA LK+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.4 bits (65), Expect = 0.023 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 16 DELTALLSNAEVISDIKKLTELSKEQSSIEEISVASKEYLSVLEDIKENKELLEDKELSE 75 + LT +SN + +S+ K L+EL K+Q E + + LED++E + K++ E Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENE------LDQMERLEDMQEQAQANALKQIEE 234 Query: 76 LAKEELKILEIKKSDLETAIKQLLIPKDPNDD 107 L K++ + +++ + +IK K P D+ Sbjct: 235 LNKKQAEEAVRQRAKDKISIKTDKSQKSPEDN 266
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.019 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 5 ANEEKAPKKAKAEAAQENKTKENNKAKENKIKESKIKEAKTKEGK 49 A +EK+ A +A E++ K+ +K + E+ + + K K K Sbjct: 414 AAKEKSDADAALSSAMESRKKKEDKKRS---AENNLNDEKNKPRK 455
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 7e-07 Identities = 53/271 (19%), Positives = 101/271 (37%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGLIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA G + + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLRKKSVKKEESAFKIPFHL----- 200 + ++ + + F+ L H ++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPAIAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILVLKSIACFLPIFFHQI 287 +A +LG + A + ++ L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 71.2 bits (174), Expect = 3e-15 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 16/228 (7%) Query: 162 LPTLNAQEEKEEVKEEVKETPQEEEKPKDDEIQEGETLKDKEVSKELETQE----EVKEE 217 P+ + E K+E K + E+ + Q E K+ + + + TQ + E Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 218 TQEQAKEQESIKEETQEELEIPKEETQEIKEEKQEKTQDSPSTQELEAMQELVKEIQENS 277 T+E + E+ + T E+ E K ET++ +E + +Q SP ++ E +Q + +EN Sbjct: 1092 TKE-TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 278 ---NGQEDKKEAQESAETPQDKEKQEKEIPQETEKQ--------ELETPQEEKQESAEIP 326 N +E + + +A+T Q ++ + Q + +E P+ + + Sbjct: 1151 PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPT 1210 Query: 327 QKETQEKKAQEDHYKSIEDIPEPVMAQAMGEALPFLNESVAKTSNNEN 374 K + H +S+ +P V TS N N Sbjct: 1211 VNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258 Score = 57.0 bits (137), Expect = 1e-10 Identities = 48/288 (16%), Positives = 94/288 (32%), Gaps = 24/288 (8%) Query: 140 ELENLGDLKALAQEEPNNEEQLLPTLNAQEEKEEVK-EEVKETPQEEEKPKDDEIQEGET 198 E+E N Q +E + +E P P + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 199 LKDKEVSKELETQE--EVKEETQEQAKEQESIKEETQEELEIPKEETQEIKEEKQEKTQD 256 K + + E Q+ E + +E AKE +S + + E+ + ++ +E Q Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET--KETQTTETK 1101 Query: 257 SPSTQELEAMQELVKEIQENSNGQEDKKEAQESAETPQDKEKQEKEIPQETEKQELETPQ 316 +T E E ++ E + ++ + +++ +E+ E PQ + Sbjct: 1102 ETATVEKEEKAKVETE--------KTQEVPKVTSQVSPKQEQSETVQPQAEPA-----RE 1148 Query: 317 EEKQESAEIPQKETQEKKAQEDHYKSIE-DIPEPVMAQAMGEALPFLNESVAKTSNNEND 375 + + + PQ +T E K ++ +PV SV + N Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN----SVVENPENT-T 1203 Query: 376 TETPKESVIKTPQEKEGSDKASSPLELRLNLQDLLKSLNQESLKNLLE 423 T + +V K + S + N++ S N S L + Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCD 1251 Score = 53.5 bits (128), Expect = 1e-09 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 30/252 (11%) Query: 150 LAQEEPNNEEQLLPTLNAQEEKEEVKEEVKETPQEEEKPKDDEIQEGETLKDKEVSKELE 209 L E Q + T N + EE + DE + + E Sbjct: 980 LYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEA----PVPPPAPATPSE 1035 Query: 210 TQEEVKEETQEQAKEQESIKEETQEELEIPKEETQEIKEEKQEKTQDSPSTQELEAMQEL 269 T E V E +++++K EK E+ + Q E +E Sbjct: 1036 TTETVAENSKQESKT-----------------------VEKNEQDATETTAQNREVAKEA 1072 Query: 270 VKEIQENSNGQEDKKEAQESAETPQDKEKQEKEIPQETEKQELETPQEEKQESAEIPQKE 329 ++ N+ E + E+ ET Q E +E ++ EK ++ET E+ QE ++ + Sbjct: 1073 KSNVKANTQTNEVAQSGSETKET-QTTETKETATVEKEEKAKVET--EKTQEVPKVTSQV 1129 Query: 330 TQEKKAQEDHYKSIEDIPEPVMAQAMGEALPFLNESVAKTSNNENDTETPKESVIKTPQE 389 + +++ E E E + E N + + + ++ V ++ Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 390 KEGSDKASSPLE 401 G+ +P Sbjct: 1190 NTGNSVVENPEN 1201 Score = 39.7 bits (92), Expect = 2e-05 Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 11/228 (4%) Query: 217 ETQEQAKEQESIKEETQEELEIPKEETQEIKEEKQEKTQDSPSTQELEAMQ-ELVKEIQE 275 E + Q + +I + ++P + + + ++ P + E V E + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 276 NSNGQEDKKEAQESAETPQDKEKQEK---EIPQETEKQELETPQEEKQESAEIPQKETQE 332 + +K E + T Q++E ++ + T+ E+ E +E+ KET Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA- 1104 Query: 333 KKAQEDHYKSIEDIPEPVMAQAMGEALPFLNESVAKTSNNENDTETPKESVIKTPQEKEG 392 +E+ K + + V + + P +S E E IK PQ + Sbjct: 1105 TVEKEEKAKVETEKTQEV-PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 393 SDKASSPLELRLNLQDLLKSLNQESLKNLLENKTLSIKITLEDKKPDA 440 + + + ++ Q ++ N S+ E+ P Sbjct: 1164 TTADTEQPAKETS-----SNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Score = 32.3 bits (73), Expect = 0.005 Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 6/163 (3%) Query: 148 KALAQEEPNNEEQLLPTLNAQEEKEEVKEEVKETPQEEEKPKDDEIQEGETLKDKEVSKE 207 K +Q P E+ A+ +E + PQ + D Q + V + Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS-SNVEQP 1182 Query: 208 LETQEEVK-----EETQEQAKEQESIKEETQEELEIPKEETQEIKEEKQEKTQDSPSTQE 262 + V E E + E PK + + + ++ Sbjct: 1183 VTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242 Query: 263 LEAMQELVKEIQENSNGQEDKKEAQESAETPQDKEKQEKEIPQ 305 + L N+N A+ + + I Q Sbjct: 1243 DRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQ 1285
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 191 bits (486), Expect = 3e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.4 bits (63), Expect = 0.013 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 RGETILKALERIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEG 147 R + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 27.8 bits (62), Expect = 0.026 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLVILVDIWVYSDVHQFLL-DTASSPILLLVALLIKW 87 V VA ++A +L +LV L I D+ + LL D + P+L LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLPLLWG-GLLFNL 174
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.006 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALSGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 197 bits (502), Expect = 3e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 42.1 bits (99), Expect = 6e-06 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFHPFSG 475 T G V +H +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF03944#delta endotoxin Length = 633 Score = 31.6 bits (71), Expect = 0.004 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQFASQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 27.4 bits (61), Expect = 0.012 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 18 NAFVNFFKNNLADKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLV 77 A N L + Y L+ L + S + G + I IN ++ Sbjct: 70 QALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVV-QYGFLISGEAIKPDIKKINPIEGA 128 Query: 78 EKLFKKQS 85 +++F +S Sbjct: 129 KRIFSIKS 136
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.0 bits (65), Expect = 0.033 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 300 EEREKKLLAEKEKQ--------EAELAKY--KLKDLENQKKLKALEAELKKKN 342 E +E L K E ++ +Y K+ +LE ++ + L + L Sbjct: 62 ERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.0 bits (98), Expect = 3e-05 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 3/166 (1%) Query: 767 TPEAKKLLEEEAKESVKAYLDCVSQARTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 826 P ++ + + +++T + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 827 VSQAKTEAEKKECEKLLTPE-AKKLLEEEAKESVKAYLDCVSRARNEKEKKECEKLLTPE 885 A++ +E KE + T E A EE+AK + + K+E + + P+ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 886 AKKKLEEAKKSVKAYLDCVSQARTEAEKKECEKLLTPEARKLLEQE 931 A+ E + SQ T A+ ++ K + + + + Sbjct: 1143 AEPAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Score = 40.0 bits (93), Expect = 1e-04 Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 7/228 (3%) Query: 583 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 642 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 643 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKNLPKDLQKKVLAK 702 A++ +E KE + T E + +++ KT E K + PK Q + + Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQP 1141 Query: 703 ESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLL------EEAKESLKAYKDCVSRSRNE 756 ++ A + + E + + T + K + + + V + Sbjct: 1142 QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPEN 1201 Query: 757 KEKQECEKLLTPEAKKLLEEEAKESVKAYLDCVSQARTEAEKKECEKL 804 + + E+ + + SV++ V A T + + L Sbjct: 1202 TTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 37.0 bits (85), Expect = 8e-04 Identities = 39/252 (15%), Positives = 91/252 (36%), Gaps = 10/252 (3%) Query: 803 KLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLL----TPEAKKLLEEEAKES 858 L PE +K + + QA + E++ P ++ + Sbjct: 979 DLYNPEVEK-RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 859 VKAYLDCVSRARNEKEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQARTEAEKKECEK 918 + ++ ++ ++ T + ++ +EAK +VKA A++ +E KE + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQT 1097 Query: 919 LLTPEARKLLEQEVKKSVKAYLDCVSR-ARNEKEKKECEKLLTPEAKKLLEQQALDCLKN 977 T E + ++E K V + K+E + + P+A+ E +K Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 978 AK----TEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAK 1033 + T A+ ++ K+ ++++ V +V V N + + + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 1034 KLLEEAKESLKA 1045 K + S+++ Sbjct: 1218 KPKNRHRRSVRS 1229 Score = 35.4 bits (81), Expect = 0.003 Identities = 26/177 (14%), Positives = 66/177 (37%), Gaps = 4/177 (2%) Query: 499 KARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 556 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 557 ESVKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKE 616 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 617 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEQQA 671 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Score = 34.3 bits (78), Expect = 0.006 Identities = 35/249 (14%), Positives = 91/249 (36%), Gaps = 12/249 (4%) Query: 676 KNAKTDEERKKCLKNLP-KDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKK 734 + ++ E + P ++ + + ++ ++ ++ T + ++ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 735 LLEEAKESLKAYKDCVSRSRNE--KEKQECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA 792 + +EAK ++KA + NE + E ++ T E K+ E +E K + + Sbjct: 1068 VAKEAKSNVKA-----NTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEV 1122 Query: 793 RTEAEKKECEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKL 850 + ++ + + + E A+++ + SQ T A+ ++ K + ++ Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQP 1182 Query: 851 LEEEAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQARTE 910 + E +V V N + + + K ++SV++ V A T Sbjct: 1183 VTEST--TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Query: 911 AEKKECEKL 919 + + L Sbjct: 1241 SNDRSTVAL 1249 Score = 31.6 bits (71), Expect = 0.035 Identities = 29/217 (13%), Positives = 64/217 (29%), Gaps = 14/217 (6%) Query: 921 TPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKT 980 TP E K ++ + E + E ++ Q + ++ Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 981 EAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAK 1040 E + ++K+ AK + + K+E + + P+A+ E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 1041 ESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQE 1100 + + +++ A + E +EQ V +S + E Sbjct: 1152 TVN------IKEPQSQTNTTADTEQPAKETSSNVEQPVTES--------TTVNTGNSVVE 1197 Query: 1101 CEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNI 1137 + TP + S K R+ ++ N+ Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNV 1234
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 868 bits (2244), Expect = 0.0 Identities = 511/522 (97%), Positives = 514/522 (98%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 M QAFFKKIVGCFCLGYLFLSS IEA A DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSSLMFEKEAVNFALMTR 120 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKS+LMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 181 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 241 EETVKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 EE V+QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 301 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIRREKVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.4 bits (73), Expect = 0.002 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKKLVALGFKKIKTLYQRHDDKEVTEEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y++ + K K + D KE+ E++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 17 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 69 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 70 IVLSVILF-QAYEPVLIVAIVIVLVALG 96 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 1653 bits (4282), Expect = 0.0 Identities = 910/1189 (76%), Positives = 1011/1189 (85%), Gaps = 64/1189 (5%) Query: 1 MANETINQTKKPDQTPSQTAFNPQQFISNLQVAFIKLDSAVASFDPDQKPIVDKNDRDNR 60 M NETI+Q Q ++ AFNPQQFI+NLQVAF+K+D+AVAS+DPDQKPIVDKNDRDNR Sbjct: 1 MTNETIDQ-----QPQTEAAFNPQQFINNLQVAFLKVDNAVASYDPDQKPIVDKNDRDNR 55 Query: 61 QAFNVISQLREEYANKAIKNPTKKNQYFSDFIDKSNDLINKDNLIDIDSSTKSFEKFGAQ 120 QAF ISQLREEY+NKAIKNPTKKNQYFSDFI+KSNDLINKDNLID++SSTKSF+KFG Q Sbjct: 56 QAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQ 115 Query: 121 RYQIFMNWVSHQKDPSKINTQKIRNFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQ 180 RY+IF +WVSHQ DPSKINT+ IRNFMENIIQPPI DDKEKAEFL+SAKQSFAGIIIGNQ Sbjct: 116 RYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPILDDKEKAEFLKSAKQSFAGIIIGNQ 175 Query: 181 IRSDEKFMGVFDESLKERQEAEKNGEPAGGDWLDIFLSFVFNKEQSSDLKETLNQEPRPN 240 IR+D+KFMGVFDESLKERQEAEKNGEP GGDWLDIFLSF+F+K+QSSD+KE +NQEP P+ Sbjct: 176 IRTDQKFMGVFDESLKERQEAEKNGEPTGGDWLDIFLSFIFDKKQSSDVKEAINQEPVPH 235 Query: 241 VEQNVASTPTHIQGLPPEARDLLDERGDFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH 300 V+ ++A+T T IQGLPPEARDLLDERG+FSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH Sbjct: 236 VQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIH 295 Query: 301 NNALSSMLMGSHSSIEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINAHLKN 360 NNALSS+LMGSH+ IEPEKVSLLYG NGGP ARHDWNATVGYK+QQGNNVAT+IN H+KN Sbjct: 296 NNALSSVLMGSHNGIEPEKVSLLYGGNGGPGARHDWNATVGYKDQQGNNVATIINVHMKN 355 Query: 361 GSGLVIAGNGNGINNPSFYLYKTDQLTGLEQALSQEEIQNKVDFMELLAQNNARLDNLSE 420 GSGLVIAG GINNPSFYLYK DQLTG ++ALSQEEIQNK+DFME LAQNNA+LDNLSE Sbjct: 356 GSGLVIAGGEKGINNPSFYLYKEDQLTGSQRALSQEEIQNKIDFMEFLAQNNAKLDNLSE 415 Query: 421 EEKEKFQTEIGNFQKDPKAYLDSLGNDRIAFVSKKDQKHLALVTEFGNGELSYTLKDYGK 480 +EKEKF+TEI +FQKD KAYLD+LGNDRIAFVSKKD KH AL+TEFGNG+LSYTLKDYGK Sbjct: 416 KEKEKFRTEIKDFQKDSKAYLDALGNDRIAFVSKKDTKHSALITEFGNGDLSYTLKDYGK 475 Query: 481 KQDRALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDEGIGATNGVSHLEANFSKV 540 K D+ALDRE TLQG+LKHDGVMFV+YSNFKYTNASK+P++G+G TNGVSHLE F+KV Sbjct: 476 KADKALDREKNVTLQGSLKHDGVMFVDYSNFKYTNASKNPNKGVGVTNGVSHLEVGFNKV 535 Query: 541 AVFNLPDLNGLAISSFARRNLEDKLIAKGLPPKDANKIIKDFLNSNKELLEKALDFNKAV 600 A+FNLPDLN LAI+SF RRNLEDKL KGL P++ANK+IKDFL+SNKEL+ K L+FNKAV Sbjct: 536 AIFNLPDLNNLAITSFVRRNLEDKLTTKGLSPQEANKLIKDFLSSNKELVGKTLNFNKAV 595 Query: 601 AEAKNTGNYDGVKKAQKDLEKSIRKRERLEQEITKKFENKSGNKNKMEAKVQANSQKDGI 660 A+AKNTGNYD VKKAQKDLEKS+RKRE LE+E+ KK E+KSGNKNKMEAK QANSQKD I Sbjct: 596 ADAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEI 655 Query: 661 FKLINEEAHKEARIAAYAQNLKGIRRELSDKIENINKNLKDFDKSFDALKSGKNKDFSKA 720 F LIN+EA+++AR AYAQNLKGI+RELSDK+EN+NKNLKDFDKSFD K+GKNKDFSKA Sbjct: 656 FALINKEANRDARAIAYAQNLKGIKRELSDKLENVNKNLKDFDKSFDEFKNGKNKDFSKA 715 Query: 721 EETLKALESSVKDLGINPEWISKVENLNAALNEFENGKNKDFSKVTQAKSDLENSIKDVL 780 EETLKAL+ SVKDLGINPEWISKVENLNAALNEF+NGKNKDFSKVTQAKSDLENS+KDV+ Sbjct: 716 EETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVI 775 Query: 781 INQEITDKVDNLNQAVLTAKAIGDFSGVEQALAELKNFSTNQ---------------KSD 825 INQ++TDKVDNLNQAV AKA GDFS VEQALA+LKNFS Q KS+ Sbjct: 776 INQKVTDKVDNLNQAVSVAKATGDFSRVEQALADLKNFSKEQLAQQAQKNESLNARKKSE 835 Query: 826 LQKSVKNGVNGTLVGNGLSKTEATTLTKKFSDIKKELNEKFANFNNNNNGLKNSTEPIYA 885 + +SVKNGVNGTLVGNGLS+ EATTL+K FSDIKKELN K NFNNNNN EPIYA Sbjct: 836 IYQSVKNGVNGTLVGNGLSQAEATTLSKNFSDIKKELNAKLGNFNNNNN-NGLKNEPIYA 894 Query: 886 KVNKKKTGQVASPEESIYTQVAKQVNAKIDQLNKIASASKGVGDFSGLGQSDSSEPIYAT 945 KVNKKK GQ AS EE IY QVAK+VNAKID+LN+IAS VG +G Sbjct: 895 KVNKKKAGQAASLEEPIYAQVAKKVNAKIDRLNQIASGLGVVGQAAG------------- 941 Query: 946 IDDLGGPFPLSRLGRSDSPEPIYATIDLSKVGLSREQELTQKIGNLTQKIGNLNQAVSEA 1005 FPL R + D DLSKVGLSR QE L QKI NLNQAVSEA Sbjct: 942 -------FPLKRHDKVD---------DLSKVGLSRNQE-------LAQKIDNLNQAVSEA 978 Query: 1006 KAGFFGNLEQTMDRLKDSTKKNVVNLWVESVKVVPASSQAKLDNYATNSHTRINSNVKNG 1065 KAGFFGNLEQT+D+LKDSTK N +NLWVES K VPAS AKLDNYATNSH RINSN+KNG Sbjct: 979 KAGFFGNLEQTIDKLKDSTKHNPMNLWVESAKKVPASLSAKLDNYATNSHIRINSNIKNG 1038 Query: 1066 TINEKAIGMLTQKNPEWLKLVNDKIVAHNVGSAPLSAYDKIGFNQKNMKDYSDSFKFSTK 1125 INEKA GMLTQKNPEWLKLVNDKIVAHNVGS PLS YDKIGFNQKNMKDYSDSFKFSTK Sbjct: 1039 AINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFNQKNMKDYSDSFKFSTK 1098 Query: 1126 LNNAVKNIKSGFKQLLTDCISAGSY---SPKKAEYGV----TKSGFQKS 1167 LNNAVK+ SGF Q LT+ S SY + + AE+G+ TK GFQKS Sbjct: 1099 LNNAVKDTNSGFTQFLTNAFSTASYYCLARENAEHGIKNVNTKGGFQKS 1147
>PF07132#Harpin protein (HrpN) Length = 356 Score = 34.7 bits (79), Expect = 3e-05 Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 36 FWGGAVGGAMGGAMGGMIGSLGGPWNTVVGAGIGGGIGAYSGADIG 81 F G +GG +GG +GG+ SLGG ++G G+GGG+G+ G+ +G Sbjct: 60 FMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 28.5 bits (63), Expect = 0.005 Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 33 LGRFWGGAVGGAMGGAMGGMIGSLGGPWNTVVGAGIGGGIGAYSGADIGD 82 +G GG +GG +GG + G GG +G G+G +G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (707), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYVD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.6 bits (97), Expect = 1e-05 Identities = 21/76 (27%), Positives = 29/76 (38%) Query: 473 KIALKNHSENKSALEVVKEFKFPYSKPKPTTETTAETKEKETKEKETKEKETKEKETKEK 532 K KN + +E T E + ++ KET+ ETKE T EK Sbjct: 1049 KTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK 1108 Query: 533 ETKEKETKEKEVQETQ 548 E K K EK + + Sbjct: 1109 EEKAKVETEKTQEVPK 1124 Score = 38.1 bits (88), Expect = 1e-04 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 17/79 (21%) Query: 497 SKPKPTTETTAETKEKETKEKETKEKETKEK-----------------ETKEKETKEKET 539 + P TTET AE ++E+K E E++ E T+ E + + Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 540 KEKEVQETQPKETPTALQE 558 + KE Q T+ KET T +E Sbjct: 1091 ETKETQTTETKETATVEKE 1109 Score = 37.0 bits (85), Expect = 3e-04 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 468 KGENIKIALKNHSENKSALEVVKEFKFPYSKPKPTTETTAETKEKETKEKETKEKETKEK 527 +N ++A + S K+ + + + S + T ETKE T EKE K K EK Sbjct: 1062 TAQNREVAKEAKSNVKANTQTNEVAQ---SGSETKETQTTETKETATVEKEEKAKVETEK 1118 Query: 528 ETKE-KETKEKETKEKEVQETQPKETPTA 555 + K T + K+++ + QP+ P Sbjct: 1119 TQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Score = 33.5 bits (76), Expect = 0.003 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 14/93 (15%) Query: 475 ALKNHSENKSALEVVKEFKFPYSKPKPTTETTAETKEK----------ETKEKETKEKET 524 A + + A +E K + TETTA+ +E T+ E + + Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 525 KEKETKEKETKEKETKEKE----VQETQPKETP 553 + KET+ ETKE T EKE V+ + +E P Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVP 1123
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 669 SISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLK 717 +S + S V+L NL Q+ + AN++ + T++ I + L+N++ Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.014 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALS 359 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L +V+KA+S Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLA----KKDVAKAIS 234
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 1932 bits (5007), Expect = 0.0 Identities = 1144/1297 (88%), Positives = 1204/1297 (92%), Gaps = 10/1297 (0%) Query: 1 MEIQQTHRKINRPLVSLALVGLLVSITPQKSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 MEIQQTHRKINRPLVSLALVG LVSITPQ+SHAAFFTTVIIPAIVGGIATGAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LSWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 L WGLKQAEEANKTPDKPDKVWRIQAG+GFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKGGQWNKLEVDMQDAVGTYNLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSFKD 180 HYWVK GQWNKLEVDMQ+AVGTYNLSGL NFTGGDLDVNMQKATLRLGQFNGNSFTS+KD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 SADRTTRVNFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYD 240 SADRTTRV+FNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVVGEVNFSHLTVGDQNAAQA 300 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKV GEVNF+HLTVGD NAAQA Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQA 300 Query: 301 GIIASKKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNNTASQSGAKNDKNESAKNDKQGSS 360 GIIAS KTHIGTLDLWQSAGLNIIAPPEGGYKDKPN+ S + N AKNDKQ SS Sbjct: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNN-----AKNDKQESS 355 Query: 361 QDNSNTQVINPPNSGQKTETQPTQVIDGPFAGAKDTAVTIDSLNTKSDGTIKVGGFKASL 420 Q+NSNTQVINPPNS QKTE QPTQVIDGPFAG K+T V I+ +NT +DGTI+VGGFKASL Sbjct: 356 QNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASL 415 Query: 421 TTNAANLNIGKGGVNLSNQASGRSLLVENLTGNITVNGALKVNGQAGGYALSGSSASFEF 480 TTNAA+L+IGKGG+NLSNQASGRSLLVENLTGNITV+G L+VN Q GGYAL+GSSA+FEF Sbjct: 416 TTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEF 475 Query: 481 KAGVDTNNGTIAFNNNISLGRFVNLKASAHTVNFKDIDTGNGGFNTLDFSGVTGKVNINK 540 KAG DT NGT FNN+ISLGRFVNLK AHT NFK IDTGNGGFNTLDFSGVT KVNINK Sbjct: 476 KAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINK 535 Query: 541 LITASTNVAVKNFNINELLVKTNGVSVGEYTHFSEDIGNQSRINTVRLETGTRSIYSGGV 600 LITASTNVAVKNFNINEL+VKTNGVSVGEYTHFSEDIG+QSRINTVRLETGTRSIYSGGV Sbjct: 536 LITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGV 595 Query: 601 KFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGHNA 660 KFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLG NA Sbjct: 596 KFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNA 655 Query: 661 VMDYSQFSNVTIQGDFVNNQGTINYLVRGGNIETLSVGNAAAMMFNNSVDSATGFYKPLM 720 VMDYSQFSN+TIQGDFVNNQGTINYLVRGG + TL+VGNAAAM F+N+VDSATGFY+PLM Sbjct: 656 VMDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLM 715 Query: 721 NINSAQDLIKNKEHVLLKAKVIGYGNVSLGTNSISNVNLMEQFKERLALYNNNNRMDICV 780 INSAQDLIKNKEHVLLKAK+IGYGNVS GT+SI+NVNL+EQFKERLALYNNNNRMDICV Sbjct: 716 KINSAQDLIKNKEHVLLKAKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICV 775 Query: 781 VRDLNDVKACGTAIGNTDMVNNPSKYNYLVGKAWKNIGISKTANGSKISVRYLGNSTP-- 838 VR+ +D+KACGTAIGN MVNNP Y YL GKAWKNIGISKTANGSKISV YLGNSTP Sbjct: 776 VRNTDDIKACGTAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTE 835 Query: 839 --SDPTDLPKNAEDSAKKPLNNALLARSAFYSTSATPNLTAINKHNFGTIESVFELANRS 896 + T+LP N + + + AL+ + F SATPNL AIN+H+FGTIESVFELANRS Sbjct: 836 NGGNTTNLPTNTTNKVRFA-SYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRS 894 Query: 897 KDIDTLYANSGAQGRDLLQTLLIDNHDAGYARTMIDATSTNEITKQLNEANSALNNIASL 956 DIDTLYANSGAQGRDLLQTLLID+HDAGYARTMIDATS NEITKQLN A + LNNIASL Sbjct: 895 NDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASL 954 Query: 957 DHKTSGLQTLSLSNAMILNSRLVNLSRRHTNNIDSFAKRLQALKDQKFASLESAAEVLYQ 1016 +HKTSGLQTLSLSNAMILNSRLVNLSRRHTN+IDSFAKRLQALKDQ+FASLESAAEVLYQ Sbjct: 955 EHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQ 1014 Query: 1017 FAPKYEKPTNVWANAIGGASLNNGGNTSLYGTSAGVDAYLDREVQAIVGGFGSYGYSSFS 1076 FAPKYEKPTNVWANAIGG SLN+GGN SLYGTSAGVDAYL+ EV+AIVGGFGSYGYSSFS Sbjct: 1015 FAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFS 1074 Query: 1077 NQANSLNSGANNANFGVYSRIFANQHEFDFEAQGAVGSDQSSLNFKSALLRDLNQSYNYL 1136 NQANSLNSGANN NFGVYSRIFANQHEFDFEAQGA+GSDQSSLNFKSALLRDLNQSYNYL Sbjct: 1075 NQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYL 1134 Query: 1137 AYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFESNSTHKAALKNGASSQHLFN 1196 AYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNF+SNS K ALKNGASSQHLFN Sbjct: 1135 AYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFN 1194 Query: 1197 ASANVEARYYYGDTSYFYMNAGVLQEFASIGSKTAASLNTFKVNVARNPLNTHARVMMGG 1256 ASANVEARYYYGDTSYFYMNAGVLQEFA+ GS A SLNTFKVN RNPLNTHARVMMGG Sbjct: 1195 ASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGG 1254 Query: 1257 ELQLAKEVFLNLGFIYLHNLISNIGHFASNLGMRYSF 1293 EL+LAKEVFLNLGF+YLHNLISNIGHFASNLGMRYSF Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.0 bits (220), Expect = 5e-23 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%) Query: 1 MGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDIDVSDSDALKEAFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS A+ E I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNI 174 + + ++ I + S V + Y++SK A ++ L LEL +NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFENDERKDSLYALEVDAAKSFYSGV-YQKALSPKAVAQKIVF 233 + ++ PG +++ + + + ++ + + + ++F +G+ +K P +A ++F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 234 LAMSQ 238 L Q Sbjct: 238 LVSGQ 242
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.9 bits (96), Expect = 8e-06 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGDLSFESGEETPSQSVQIPTTGSDGNESHVVPISKIQNIMRDR 324 + AE +K + G S G+E V+ + ++I +++ Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 24.3 bits (52), Expect = 0.012 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%) Query: 14 SIQWNALVRKPLS-LERGSFTL 34 SI+WN LV KP+S L+R + +L Sbjct: 452 SIRWNQLVEKPISPLQRSNLSL 473
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.1 bits (88), Expect = 6e-05 Identities = 54/328 (16%), Positives = 111/328 (33%), Gaps = 6/328 (1%) Query: 2 SENEELELGAKVAELDKRAAGLDERENRLNEIQEQLRKKIDAFNQEKEVYLKNQKEFEDF 61 E E L K ++L L + + L E ++K+ ++ +E E Sbjct: 62 FEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEAR 121 Query: 62 MEDKEVFKKEQVQKVKESLRTYEKEQKELILETIGKQLQEQQESLNKDYVKKLESIKEHS 121 D E + + + + E K E+ ++ + + Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 181 Query: 122 DRLENNLKTQ---FDAQLEKWEQNFKGYEQQLTGILNDKARLDWDEQRLNIQKQALENHI 178 + + L+ + + LE ++ + +KA L + L + N Sbjct: 182 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFS 241 Query: 179 KRREEEIKKENQKEIVRLNKCKSDLHAQLDEMADETSALRKENRELKERIDLQKDDYREK 238 +IK ++ + + E A S + E + + Sbjct: 242 TADSAKIKTLEAEKAALEARQAE--LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299 Query: 239 LERDNRVLENCKKDLLATNENLRNRIQELENEKNKLDPRDERIKES-EEKRRELEEIRAQ 297 LE ++VL ++ L + R ++LE E KL+ +++ + S + RR+L+ R Sbjct: 300 LEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREA 359 Query: 298 KEDAEQKYNTLLARNNQLEVDLVSLEAD 325 K+ E ++ L +N E SL D Sbjct: 360 KKQLEAEHQKLEEQNKISEASRQSLRRD 387 Score = 28.9 bits (64), Expect = 0.045 Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 8/267 (2%) Query: 71 EQVQKVKESLRTYEKEQKELILETIGKQLQEQQESLNKDYVKKLESIKEHSDRLENNLKT 130 + ++KV+E +E E L L+ + + D + + S + R + + Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLS 109 Query: 131 QFDAQLEKWEQNFKGYEQQLTGILNDKARLDWDEQRLNIQKQALENHIKRREEEIKKENQ 190 + +++++ E E+ L G +N + L +K AL E+ ++ Sbjct: 110 EKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE---- 165 Query: 191 KEIVRLNKCKSDLHAQLDEMADETSALRKENRELKERIDLQKDDYREKLERDNRVLENCK 250 + + S L+ A + E + E K++ Sbjct: 166 -GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALA 224 Query: 251 KDLLATNENLRNRIQELENEKNKLDPRDERIKESEEKRRELEEIRAQKEDAEQKYNTLLA 310 + L + + K+ + E ++ ELE+ E A A Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK---ALEGAMNFSTADSA 281 Query: 311 RNNQLEVDLVSLEADGNILKERFENLK 337 + LE + +LEA+ L+ + + L Sbjct: 282 KIKTLEAEKAALEAEKADLEHQSQVLN 308
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 30.2 bits (68), Expect = 0.024 Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Query: 297 ILSQAKLIAINSNVSYGLSVLEHIQDERKRRSELFKKAGSKVSDYVSYREHTKEKLPRIL 356 +LSQ ++ + + +S G + +E + R + D+ + +KE++ + Sbjct: 4 VLSQDEIDQLLTAISSGDASIEDARPISDTRK-------ITLYDFRRPDKFSKEQMRTLS 56 Query: 357 IVIDEFQTLFSTKDRDKIEDIMVDI 381 ++ + F L +T ++ MV + Sbjct: 57 LMHETFARLTTTSLSAQLRS-MVHV 80
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.1 bits (75), Expect = 0.001 Identities = 25/145 (17%), Positives = 47/145 (32%) Query: 27 GATKKELKQLQVNSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKALQEVQANTLKQQSQTLDDLRNEIYANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ E N S + L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKPLKSNA 171 + ++ E ++ E+ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (373), Expect = 9e-46 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 22 NMDKETVAGDVSAKTVQSAPVSTETVQEKQEPKEEPKQEPAPVVEEKPAVESGTIIASIY 81 D ++ VS + Q P P PAP V+ K T+ + + Sbjct: 177 RPDNGMLSLGVSYRFGQGEAA----------PVVAPAPAPAPEVQTK----HFTLKSDVL 222 Query: 82 FDFDKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVK 138 F+F+K +K Q LD++ + V++ G TD GS YNQ L +R SV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 139 NALIIKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYRENRRVDVKL 181 + LI KG+ D I GE+ P K R +C +RRV++++ Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF06580#Sensor histidine kinase Length = 349 Score = 27.1 bits (60), Expect = 0.024 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 22/146 (15%) Query: 8 YLMAVVFVVFVLLLWAMNVWVYRPLLAFMDNRQAEIKDSLAKIKTDNTQSVEIRHQIE-- 65 L + VV V +W++ +Y F + +QAEI Q + ++ QI Sbjct: 117 ALSIIFNVVVVTFMWSL---LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPH 173 Query: 66 ----------TLLKEAAEKRREMIAEAIQKATESYDAVIKQKENE---LNQEFEAFAKQL 112 L+ E K REM+ +E ++ L E L Sbjct: 174 FMFNALNNIRALILEDPTKAREML----TSLSELMRYSLRYSNARQVSLADELTVVDSYL 229 Query: 113 QNEKQALKEQLQVQMPVFEDELNKRV 138 Q +++LQ + + ++ +V Sbjct: 230 QLASIQFEDRLQFENQINPAIMDVQV 255
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 38.1 bits (88), Expect = 1e-04 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 4/200 (2%) Query: 291 FKKQLESYFDTSYQESTDTIKKMKENYTNKTAEVLERLDEIVKTEQTNLQTKLNTESFKR 350 + + TDT++K++E E + N K + + Sbjct: 33 LVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTE 92 Query: 351 IIETLRSKINGNWQKMRDKSKEMSRSFKLESTKNEIKEIRDLVDTANQQIANHNEMIKDI 410 + + K+ N + + +K+ ++ ++ + E TA+ E K Sbjct: 93 ELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 152 Query: 411 QNQKKICVEQTWKFLVNEFKSDIQKYNKEDCGLEKGIKKLENEIRENEKKIEKLENEIRE 470 +K +E+ + +N +D K LE LE E EK +E N Sbjct: 153 LAARKADLEKALEGAMNFSTADSAKIKT----LEAEKAALEARQAELEKALEGAMNFSTA 208 Query: 471 LEKNMVSIKPIVNEINALLK 490 + +++ + A Sbjct: 209 DSAKIKTLEAEKAALAARKA 228 Score = 31.6 bits (71), Expect = 0.013 Identities = 23/172 (13%), Positives = 48/172 (27%) Query: 302 SYQESTDTIKKMKENYTNKTAEVLERLDEIVKTEQTNLQTKLNTESFKRIIETLRSKING 361 + +E K +K E+ R ++ K + + + + +E ++ + Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAA 155 Query: 362 NWQKMRDKSKEMSRSFKLESTKNEIKEIRDLVDTANQQIANHNEMIKDIQNQKKICVEQT 421 + + +S K + E A Q + +T Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 422 WKFLVNEFKSDIQKYNKEDCGLEKGIKKLENEIRENEKKIEKLENEIRELEK 473 + + K G +I+ E + LE ELEK Sbjct: 216 LEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.5 bits (100), Expect = 2e-06 Identities = 26/184 (14%), Positives = 64/184 (34%), Gaps = 18/184 (9%) Query: 37 LAQQKEFEKEVKEKRAQYQSHFKALEQKEEALKEREKEQKAKFDDAVKQASALALQDERA 96 ++E + + Q+ + QKE L ++ E+ + + ++ R Sbjct: 178 NVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRL 237 Query: 97 KIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAEN 156 + + LE + + E EL ++++E+++ E A+ + Sbjct: 238 DDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 157 EKKLNEKLETERERIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQ 216 + NE L+ R+ + +L + + +A +S +VQ Sbjct: 294 QLFKNEILDKLRQTTDNI---------GLLTLELAKNEERQQASVIRAPVS-----VKVQ 339 Query: 217 ELAI 220 +L + Sbjct: 340 QLKV 343
>PF05844#YopD protein Length = 295 Score = 25.0 bits (54), Expect = 0.035 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSE 74 KQK E Sbjct: 256 KQKVE 260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 6e-04 Identities = 11/72 (15%), Positives = 20/72 (27%) Query: 61 PSKQEEANTATTAAEENPTKDSPLPLETPTQKQENKQETKQEQEKENEPKQNSASPIQNN 120 P+K+ +N E +E P + E N+PK +++ Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230 Query: 121 QKTPTTPTIGKK 132 T Sbjct: 1231 PHNVEPATTSSN 1242 Score = 32.0 bits (72), Expect = 0.001 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 3/88 (3%) Query: 45 SQNLEKTEIERQNSALPSKQEEANTATTAAEENPTKDSPLPLETPTQKQENKQETKQEQE 104 S+ E E + +A K+E+A T +E P S + P Q+Q + + E Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS---PKQEQSETVQPQAEPA 1146 Query: 105 KENEPKQNSASPIQNNQKTPTTPTIGKK 132 +EN+P N P T T K+ Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKE 1174
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 48.8 bits (116), Expect = 4e-10 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 1 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNESLFGAKGPASFMAKLTMFLG 58 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 LLFVANTIALGYFYNKEYGKSILD 82 LF ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 2e-23 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVSCAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFRRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 32.9 bits (75), Expect = 0.003 Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 24/130 (18%) Query: 347 GWDVLNLF-----------DIVRLKNKASQKDTTKDAQLIG--RGARYYPFSYNDLKPSQ 393 GW L + D + + +K + T+ LIG GA PF N++ Sbjct: 83 GWSSLKYYWKQKDPKDVTQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMPARY 142 Query: 394 IEFYQRKFDLFNPLSALERLDYHAIYDSEFIAKLNNELQDLGLGFVNEKQTIPLTPTKRF 453 ++ LS + ++ + ++ Q + E T Sbjct: 143 ----RKNVLGAVLLS----PSQSSDFEIHVSEMVTSDNQSARYLTLPEVNKQ---TTVPM 191 Query: 454 KCYYASNTKD 463 C Y Sbjct: 192 LCLYGKEDDA 201
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 111 bits (278), Expect = 2e-28 Identities = 77/401 (19%), Positives = 155/401 (38%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPLN-TYEHQERDLDFKGLLDILE 170 K + + I++ F FN N +G LN + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINKHESRVVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGA---------KEESVLEMFM---PVKNSKTKRPMSGYEVLYY 334 +E++ + + + + A K+E + ++ + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEIIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 27.5 bits (61), Expect = 0.029 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 14/95 (14%) Query: 1 MENAQVSHNIS-PFLESLETITL----SELSQQIKSMGCGSGGGGESPVEISVSNNGDFQ 55 +E Q+ + FL SL I+L S LS+QI+ + + G E+PV + + N Sbjct: 190 IEQ-QIGKRVDKTFLPSLAIISLENSWSALSKQIQ-IASTNNGQFETPVVLINAQNQRVT 247 Query: 56 IRSKADSVTIQGIKL---NRGNCA----VRFFPIL 83 I + V I L A V Sbjct: 248 ITNVDAGVVTSNIALLLNRNNMAAIDDDVPMAQSF 282
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 0.001 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKRVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 25.9 bits (57), Expect = 0.044 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 7 VHIHNLVFETILGILEFERLKPQKISVNLDLFYTQLPN-----KAYLDYIKIQELIQKMM 61 +I +L+ E ++ + L+ + IS + + K Y + I +I KM+ Sbjct: 70 EYIEDLISEVLVSSVA---LENKFISQFILEAEIKTDFTINLLKDYFSSLTIDNMISKMI 126
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 34.1 bits (78), Expect = 6e-04 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 297 PLIFMMGFVWPFESLPSYLQAFVQIVPAYHAISLLGRLNQMHAEFIDVSIH-----FYAL 351 P++F+ G V+P + LP Q + +P H+I L+ R + +DV H Y + Sbjct: 188 PILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLI-RPIMLGHPVVDVCQHVGALCIYIV 246 Query: 352 IAIFIA 357 I F++ Sbjct: 247 IPFFLS 252
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 221 bits (564), Expect = 3e-77 Identities = 65/148 (43%), Positives = 95/148 (64%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAYSCAKNPMFSLKERLEMIQLATKNFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE I A + Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 131 bits (332), Expect = 5e-40 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 6/203 (2%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIA-LSYLFDT 215 Q+ L + V I +A V + + + K +A + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST--KTDAVATIKYKVDG 199 Query: 216 PDFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 200 TPSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.014 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 194 KEKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQ-RKWYCLWTCSKKSKLSLMPEEIFN 252 K +EE+ I D A+ + Q + ALK + + Y + +K +MP EIF+ Sbjct: 367 KIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFD 421 Query: 253 DKQFTYFKF 261 D FTYF F Sbjct: 422 DGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 48.2 bits (115), Expect = 2e-08 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGRNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMSDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFAMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 283 bits (726), Expect = 5e-92 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTIKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA TI + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 EGMLASAAAQNLTEVGLNFKQVNGVNDYKIESVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRDLTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHATSASSQVFGGGNFAGISGTQHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ ++ S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGMNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 3e-04 Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 9/186 (4%) Query: 96 DDQSKKEVAEAQKEAESARDRANKSGIELE-QEKQKTEQEK-----QKTSNIETSNQIKV 149 + EVA++ E + + K +E +EK K E EK + TS + + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137 Query: 150 EQEKQKTIKTQKDFIKDLEQNCKENHGQFFIEKGGIKDSIAIEVEAECKTPKPTKTNQTP 209 + Q + D ++++ + + E+ + S +E T T + Sbjct: 1138 TVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVE 1197 Query: 210 IQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVNFYRPSSIAYLELDP 269 P + QP S + + ++ + S+P++ + N S++A +L Sbjct: 1198 NPENTTPATTQPTVNSESSNKPKNRH-RRSVRSVPHNVEPATTSSN--DRSTVALCDLTS 1254 Query: 270 RDFNVA 275 + N Sbjct: 1255 TNTNAV 1260
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.008 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 17/199 (8%) Query: 96 DDQSKKEVAEAQKEAESARDRANKSGIELE-QEKQKTSNIETSNQIKVEQEKQKTSNIET 154 + EVA++ E + + K +E +EK K +T ++ + TS Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKT------QEVPKVTS---- 1127 Query: 155 SNQIKTEQEKQKTEQERQKTIKTQKDFIKDLEQNCKENHGQFFIEKGGIKDSIAIEVEAE 214 Q+ +QE+ +T Q Q + D ++++ + + E+ + S +E Sbjct: 1128 --QVSPKQEQSETVQ-PQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 215 CKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVNF 274 T T + P + QP S + + ++ + S+P++ + N Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH-RRSVRSVPHNVEPATTSSN- 1242 Query: 275 YRPSSIAYLELDPRDFNVA 293 S++A +L + N Sbjct: 1243 -DRSTVALCDLTSTNTNAV 1260
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 293 bits (751), Expect = 2e-91 Identities = 104/454 (22%), Positives = 184/454 (40%), Gaps = 71/454 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRRNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLE----KELKDHVLTAQ 812 S++ S++P + + KL K L Sbjct: 524 FSMSATSILPARSQLLKLSKEELKPFAQKALMLD 557
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (378), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAVKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSTLFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 359 bits (922), Expect = e-125 Identities = 118/345 (34%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDVQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++DV +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKSPNFKNAIQ 186 A+ SA + NGA IERE+ +VL L++P+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIMVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.020 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + + A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA--VTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.008 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 5e-04 Identities = 12/45 (26%), Positives = 24/45 (53%) Query: 9 ENLEQAKQKLELEKQKVELEKQKQEKQDKIEQKTKEPESKEQEEE 53 E ++AK ++ Q E+ + E ++ +TKE + E+EE+ Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 549 bits (1416), Expect = 0.0 Identities = 181/582 (31%), Positives = 295/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMVPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ +DN T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFS----AVDN-TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 350 bits (900), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 36.7 bits (84), Expect = 4e-05 Identities = 46/212 (21%), Positives = 95/212 (44%), Gaps = 17/212 (8%) Query: 18 PNPEEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKI 76 P E + E +I+ + L L +LQMQ A E+ +A I + G+K Sbjct: 17 PPQAEFVPIVEPEETIIE---EAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQ 70 Query: 77 GFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSEDHLMALE----KELSAIAIDI 132 G++EG + L + E K+Q + + + + + L AL+ L +A++ Sbjct: 71 GYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEA 127 Query: 133 AKEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---K 189 A++VI + ++ + + + L + L + L+V+P D +++ L + + Sbjct: 128 ARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWR 187 Query: 190 LESNEAISKGGVMITSSNGSLDGNLMERFKTL 221 L + + GG +++ G LD ++ R++ L Sbjct: 188 LRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 140 bits (354), Expect = 2e-37 Identities = 98/438 (22%), Positives = 173/438 (39%), Gaps = 87/438 (19%) Query: 9 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 65 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 66 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 125 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 126 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSGANEVSAKARLGIKD--------- 176 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 177 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 204 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 205 F--------------------DNYLGALALVRIMDGSINTEQEILVMGTGKKHGVLGLYY 244 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 245 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 301 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 302 FAGLYPIETDRFEDLREALLKLQLNDCALNFE-PESSVALGFGFRAGFLGLLHMEVIKER 360 + P + + E L +ALL++ +D L + ++ + FLG + MEV Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIIL----SFLGKVQMEVTCAL 402 Query: 361 LEREFGLNLIATAPTVVY 378 L+ ++ + + PTV+Y Sbjct: 403 LQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 465 LKSCTKGYASFDYEP 479 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSGITSKTTIKEKTQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.045 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.1 bits (68), Expect = 0.005 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 87 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSVLFCSSLFLSSPLLGMIALVALS 146 L Y F L+L+ +LPFS S + + +L PLL + AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 147 SSLL 150 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.2 bits (117), Expect = 4e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 44.6 bits (105), Expect = 2e-07 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 39.2 bits (91), Expect = 9e-06 Identities = 16/54 (29%), Positives = 22/54 (40%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P+ PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 38.8 bits (90), Expect = 1e-05 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 87 TLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 146 T+ P P PP P E P+PEP P+P E K K K + KKV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 147 VEEKKEEKKIVE 158 E+ K + K VE Sbjct: 107 QEQPKRDVKPVE 118 Score = 36.1 bits (83), Expect = 1e-04 Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 36/214 (16%) Query: 98 PTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKIV 157 P P P +PEP+P+P PEP K V EK + K + K + Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE---------APVVIEKPKPKPKPKPKPVK 104 Query: 158 EQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGD 217 KV+++ + KPV E P N T + Sbjct: 105 --KVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSKPVTS 148 Query: 218 LGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDISDLKIIIGS 277 + + + RN + YP A L +G V+F + P+G + +++I+ Sbjct: 149 VASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAK 197 Query: 278 EYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 311 M + ++ + +P + ++ I + Sbjct: 198 PANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 33.8 bits (77), Expect = 6e-04 Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 74 QDPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.005 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPSKNTPGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 31.3 bits (70), Expect = 0.002 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 56 LFEKYPSVKDLAL-----ASLEEVKETIKSVSYSNNKSKHLISMAQKVVRDFKGVIPSTQ 110 + K P+ K+L L A +E+VKET+ + S + AQKV+ G+ PS + Sbjct: 164 MLNKSPNNKELELTKEEFAKVEQVKETLMA---SERALDETVQEAQKVLNMVNGLNPSNK 220 Query: 111 KELMSLDGVGQKTANVV 127 ++++ V + +NVV Sbjct: 221 DQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 125/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVRAHASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQNL---G 411 ++S L ++ TVN + T N + + +G + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.007 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.0 bits (65), Expect = 0.047 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + K+ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDVPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 5e-10 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVAEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 30.6 bits (69), Expect = 0.005 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVNANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 897 bits (2320), Expect = 0.0 Identities = 288/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFNTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ N LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-SYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAILVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTAQNPFKAKIFVQLKPLKERKKEHELGQFELMSALRKELKS 631 + + E FT + G AQN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKGLESINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 279 bits (716), Expect = 4e-78 Identities = 107/407 (26%), Positives = 188/407 (46%), Gaps = 15/407 (3%) Query: 2790 SAGLNAIES-AGNNSLMWLNALFMAKGGNPLFAPYYLQDTPTEHIVTLMKDITGALGMLS 2848 S ++ + + +G L L + + +A + T I + T L ++ Sbjct: 894 SNDIDTLYANSGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIA 952 Query: 2849 NSNLKNNSTDVLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDV 2908 + K + L L+ RL LS + F++RL +LK+QRFA + +A +V Sbjct: 953 SLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEV 1011 Query: 2909 ILKYSQRDKLKNNLWATGVGGVSFVENGTGTLYGVNVGYDRFVKG---VIVGGYAAYGYS 2965 + +++ + + N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS Sbjct: 1012 LYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYS 1071 Query: 2966 GFYER--ITSSKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDALLSMINQSY 3023 F + +S ++N + G+Y+R F + E F G++++ ++ ALL +NQSY Sbjct: 1072 SFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSY 1131 Query: 3024 QYSTWTTNARVNYGYDFMFKNKSIILKPQIGLRYYYIGMTGLEGVMNNALYNQFKANADP 3083 Y ++ R +YGYDF F +++LKP +G+ Y ++G T + + Sbjct: 1132 NYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGA 1187 Query: 3084 SKKSVLTIDFAFENRHYFNTNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELY 3143 S + + E R+Y+ SYFY G+ ++ + V + R Sbjct: 1188 SSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--L 1244 Query: 3144 NTFASITTGGEVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3190 NT A + GGE++L K + N G L + + N+GMR +F Sbjct: 1245 NTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 2e-10 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVIS 253 IL+A+D + L + + N L ++ +V+TD+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK LPV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 28.5 bits (63), Expect = 0.018 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 60 GELVPLEIVVETILSAIKSSDKGIILIDGYPRSVEQMQALDKELSAQNEVVL 111 G+L+ I VE LS I + D L+ P++ E++ ALDKEL A+ + L Sbjct: 127 GKLIAYPIAVEA-LSLIYNKD----LLPNPPKTWEEIPALDKELKAKGKSAL 173
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 75.5 bits (185), Expect = 2e-21 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNSTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ ++ TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.9 bits (80), Expect = 3e-04 Identities = 30/183 (16%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQAAVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.5 bits (71), Expect = 0.005 Identities = 30/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 107 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 161 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 162 KIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGVD 218 + A LA+ ++ + +K R K + + + G +L +IL++ G+ Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 219 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFATIKAIKNKQVY 276 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 277 KLP 279 ++P Sbjct: 268 RVP 270