>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 30.9 bits (69), Expect = 0.037 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%) Query: 121 QEESQLKERILKRKNEKIILNVNFIGEEVLGEEEANARFEKY---SQALKSNYIQYISIK 177 Q+ S+ ++ + + EK+ F+ E+ + + Y S+ K Y + Sbjct: 118 QDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYYEIGKGI 177 Query: 178 ITTIFSQINILDFEY-----SKKEIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLE 232 I S+ LD E+ S + D L++ +E K + K I+++ ++ Sbjct: 178 SLDIISKDKSLDPEFLNLIKSLSDDSDSSDLLFSQKFKE-KLELNNKSIDINF-----IK 231 Query: 233 LTVESFMESIAK-----FDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLK 280 + F + + F + VL+ Y PD +EY+ KL E++ + LK Sbjct: 232 ENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNKLEKGGFEKISESLK 284
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 52.4 bits (125), Expect = 1e-09 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 1/220 (0%) Query: 85 KKEEALKGGQEEINKLKEENAKLNREKTELTDKNQKLTTEKTELTNKNTELQKQVNDLKN 144 A + + + K++E K E L KN L+ L + N EL +++++ K Sbjct: 40 VSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKE 99 Query: 145 SHQVLENEKAELKTEKDNLNNQLNASQKQVNDLKNAQQALKNENADLKTENQNLTTEKDN 204 + + +E ++ L + +K + N A + L+ E L K + Sbjct: 100 KLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKAD 159 Query: 205 LTTDLSNAKSQVIQASQEKDKLEQKHAPYKKLERLYEVFLEVKGCLNFNFVEKTHSAMDL 264 L L A + S + LE + A + + E LE + K + Sbjct: 160 LEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAE 219 Query: 265 IASVLSDSKYYLESLYNKASQELSDKRSDKGEKLAELFDL 304 A+ L+ K LE A + + AE L Sbjct: 220 KAA-LAARKADLEKALEGAMNFSTADSAKIKTLEAEKAAL 258 Score = 49.7 bits (118), Expect = 1e-08 Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 3/201 (1%) Query: 29 NNEESLNNEVNDLKDRFKKVEDKLEDLEPLIKISRFIGSFFRKSSNDTQENSKDPQKKEE 88 ++L E L R +E LE + + + + E+ Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADS---AKIKTLEAEKAALEARQAELEK 197 Query: 89 ALKGGQEEINKLKEENAKLNREKTELTDKNQKLTTEKTELTNKNTELQKQVNDLKNSHQV 148 AL+G + L EK L + L N +T ++ L+ Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 149 LENEKAELKTEKDNLNNQLNASQKQVNDLKNAQQALKNENADLKTENQNLTTEKDNLTTD 208 LE +AEL+ + N A ++ L+ + AL+ E ADL+ ++Q L + +L D Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRD 317 Query: 209 LSNAKSQVIQASQEKDKLEQK 229 L ++ Q E KLE++ Sbjct: 318 LDASREAKKQLEAEHQKLEEQ 338 Score = 46.2 bits (109), Expect = 1e-07 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 11/250 (4%) Query: 7 VENTNTEKNTNISNTTASTPPPNNEESLNNEVNDLKDRFKKVEDKLEDLEPLIK-ISRFI 65 V NTN + A+ + E + + + ++ K DL K + Sbjct: 28 VLGAGLVVNTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHN 87 Query: 66 GSFFRKSSNDTQENSKDPQKKEEA---LKGGQEEINKLKEENAKLNREKTELTDKNQKLT 122 + SN ++ K+ + E ++ + L++ T + K + L Sbjct: 88 DELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLE 147 Query: 123 TEKTELTNKNTELQKQVNDLKN-------SHQVLENEKAELKTEKDNLNNQLNASQKQVN 175 EK L + +L+K + N + LE EKA L+ + L L + Sbjct: 148 AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFST 207 Query: 176 DLKNAQQALKNENADLKTENQNLTTEKDNLTTDLSNAKSQVIQASQEKDKLEQKHAPYKK 235 + L+ E A L +L + + +++ EK LE + A +K Sbjct: 208 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 267 Query: 236 LERLYEVFLE 245 F Sbjct: 268 ALEGAMNFST 277 Score = 44.7 bits (105), Expect = 4e-07 Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 3/201 (1%) Query: 30 NEESLNNEVNDLKDRFKKVEDKLEDLEPLIKISRFIGSFFRKSSNDTQENSKDPQKKEEA 89 ++L E L+ R ++E LE + + + + E+A Sbjct: 177 KIKTLEAEKAALEARQAELEKALEGAMNFSTADS---AKIKTLEAEKAALAARKADLEKA 233 Query: 90 LKGGQEEINKLKEENAKLNREKTELTDKNQKLTTEKTELTNKNTELQKQVNDLKNSHQVL 149 L+G + L EK L + +L N +T ++ L+ L Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 293 Query: 150 ENEKAELKTEKDNLNNQLNASQKQVNDLKNAQQALKNENADLKTENQNLTTEKDNLTTDL 209 E EKA+L+ + LN + ++ ++ + A++ L+ E+ L+ +N+ + +L DL Sbjct: 294 EAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDL 353 Query: 210 SNAKSQVIQASQEKDKLEQKH 230 ++ Q E KLE+++ Sbjct: 354 DASREAKKQLEAEHQKLEEQN 374
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 51.2 bits (122), Expect = 2e-09 Identities = 51/257 (19%), Positives = 93/257 (36%) Query: 13 QVREELETRIDELEDGNENLTNENTRLLASKEWLTKENAELLREKDNLIKENTELKTEKD 72 +L L+D N+ LT E + K +E + L +L+ + Sbjct: 71 LKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALE 130 Query: 73 NLNNQLDASQMQVNGLKNSHQVLEKEKAELLKDKDKLTKEKAELTDKNQKLTIEKENLTK 132 N A ++ L+ L KA+L K + + K + L EK L Sbjct: 131 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 190 Query: 133 ANAELKTENDKLNHQVIALTKEQDGLEQERVQLQDAHGFLDGLCANLEKDNQHLADKLKK 192 AEL+ + + A + + LE E+ L L+ + + K+K Sbjct: 191 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT 250 Query: 193 LESAQKNLENSNDQLLQAREKIAKENTELDLQNRRFKSAIEDLKHQNRKLEEENIALKER 252 LE+ + LE +L +A E +T + + ++ L+ + LE ++ L Sbjct: 251 LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNAN 310 Query: 253 VDGLKEQLSKLQQPKPQ 269 L+ L ++ K Q Sbjct: 311 RQSLRRDLDASREAKKQ 327 Score = 48.5 bits (115), Expect = 1e-08 Identities = 45/240 (18%), Positives = 82/240 (34%), Gaps = 7/240 (2%) Query: 30 ENLTNENTRLLASKEWLTKENAELLREKDNLIKENTELKTEKDNLNNQLDASQMQVNGLK 89 E + + L +N++L L N EL E N +L + ++ Sbjct: 53 EKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKA 112 Query: 90 NSHQVLEKEKAELLKDKDKLTKEKAELTDKNQKLTIEKENLTKANAELKTENDKLNHQVI 149 + Q LE KA+L K + + K + L EK L A+L+ + + Sbjct: 113 SKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFST 172 Query: 150 ALTKEQDGLEQERVQLQDAHGFLDGLCANLEKDNQHLADKLKKLESAQKNLENSNDQLLQ 209 A + + LE E+ L+ A LEK + + + K LE L Sbjct: 173 ADSAKIKTLEAEKAALEARQ-------AELEKALEGAMNFSTADSAKIKTLEAEKAALAA 225 Query: 210 AREKIAKENTELDLQNRRFKSAIEDLKHQNRKLEEENIALKERVDGLKEQLSKLQQPKPQ 269 + + K + + I+ L+ + LE L++ ++G + Sbjct: 226 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 285 Score = 44.7 bits (105), Expect = 2e-07 Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 7/259 (2%) Query: 16 EELETRIDELEDGNENLTNENTRLLASKEWLTKEN-------AELLREKDNLIKENTELK 68 + L+ DEL + N + + S + A+L + + + +T Sbjct: 81 KALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADS 140 Query: 69 TEKDNLNNQLDASQMQVNGLKNSHQVLEKEKAELLKDKDKLTKEKAELTDKNQKLTIEKE 128 + L + A + L+ + + L EKA L + +L E Sbjct: 141 AKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALE 200 Query: 129 NLTKANAELKTENDKLNHQVIALTKEQDGLEQERVQLQDAHGFLDGLCANLEKDNQHLAD 188 + + L + AL + LE+ + LE + L Sbjct: 201 GAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEA 260 Query: 189 KLKKLESAQKNLENSNDQLLQAREKIAKENTELDLQNRRFKSAIEDLKHQNRKLEEENIA 248 + +LE A + N + + + E L+ + + + L + L + A Sbjct: 261 RQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDA 320 Query: 249 LKERVDGLKEQLSKLQQPK 267 +E L+ + KL++ Sbjct: 321 SREAKKQLEAEHQKLEEQN 339 Score = 40.4 bits (94), Expect = 5e-06 Identities = 45/248 (18%), Positives = 85/248 (34%) Query: 13 QVREELETRIDELEDGNENLTNENTRLLASKEWLTKENAELLREKDNLIKENTELKTEKD 72 + E + L E L A K L K + + L+ EK Sbjct: 127 KALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 186 Query: 73 NLNNQLDASQMQVNGLKNSHQVLEKEKAELLKDKDKLTKEKAELTDKNQKLTIEKENLTK 132 L + + + G N + L +K L KA+L + + Sbjct: 187 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSA 246 Query: 133 ANAELKTENDKLNHQVIALTKEQDGLEQERVQLQDAHGFLDGLCANLEKDNQHLADKLKK 192 L+ E L + L K +G L+ A LE + L + + Sbjct: 247 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQV 306 Query: 193 LESAQKNLENSNDQLLQAREKIAKENTELDLQNRRFKSAIEDLKHQNRKLEEENIALKER 252 L + +++L D +A++++ E+ +L+ QN+ +++ + L+ E L+ Sbjct: 307 LNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAE 366 Query: 253 VDGLKEQL 260 L+EQ Sbjct: 367 HQKLEEQN 374 Score = 35.8 bits (82), Expect = 2e-04 Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 3/247 (1%) Query: 16 EELETRIDELEDGNENLTNENTRLLASKEWLTKENAELLREKDNLIKENTELKTEKDNLN 75 +I LE L L + E + + L E L+ + L Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE 266 Query: 76 NQLDASQMQVNGLKNSHQVLEKEKAELLKDKDKLTKEKAELTDKNQKLTIEKENLTKANA 135 L+ + + LE EKA L +K L + L Q L + + +A Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 136 ELKTENDKLNHQVIALTKEQDGLEQERVQLQDAHGFLDGLCANLEKDNQHLADKLKKLES 195 +L+ E+ KL Q + L ++ ++A L+ LE+ N+ + L Sbjct: 327 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSL-- 384 Query: 196 AQKNLENSNDQLLQAREKIAKENTELDLQNRRFKSAIEDLKHQNRKLEEENIALKERVDG 255 +++L+ S + Q + + + N++L + K E K ++ E L+ Sbjct: 385 -RRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKA 443 Query: 256 LKEQLSK 262 LKE+L+K Sbjct: 444 LKEKLAK 450
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1045 bits (2703), Expect = 0.0 Identities = 354/569 (62%), Positives = 443/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGNAS +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.3 bits (63), Expect = 0.042 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 10/136 (7%) Query: 55 EALKTNLETQKAAFMNVHKNIQTAVAQAQATHTPSVTN------TNNYGQMYGVDAMAGY 108 + + T L ++ QA A + + G+M A Sbjct: 747 QTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTS 806 Query: 109 KWFFGKT--KRFGFRTYGYYSYNHANLSFVGSKLGIMEGASQVNNFTYGVGFDALYNFYE 166 W +G +R+ A + G + +ME + + G+G+D Y+ Sbjct: 807 HWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALME--NLASKLPAGIGYDWTGMSYQ 864 Query: 167 SKEGYNTAGLFLGFGL 182 + N A + Sbjct: 865 ERLSGNQAPALVAISF 880
>cloacin#Cloacin signature. Length = 551 Score = 30.5 bits (68), Expect = 0.027 Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 5 ANEEKAPKKAKAEAAQENKTKENNKAKESKIKEAKTKESKIKETK 49 A +EK+ A +A E++ K+ +K + ++ K K K Sbjct: 414 AAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNKPRKGFK 458
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.0 bits (80), Expect = 3e-04 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 8/150 (5%) Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDAFENLNLDLSKQESDLDKVADNVKKQESDAFNMPI 109 P ET ++ T ++ + DA E + + V N Q ++ Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN--TQTNEVAQSGS 1090 Query: 110 QTHQTQTEMKTTEETQEAKKELKA-VERTPVSAQKESQAVTKKETPHEKPKVTPKDKEAH 168 +T +TQT T E +++ K E+T + SQ K+E V P+ + A Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET---VQPQAEPAR 1147 Query: 169 KDKAKHAAKEPKVK--KEAHKEVPKKANSK 196 ++ KEP+ + A E P K S Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 29.3 bits (65), Expect = 0.017 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 123 GEELTTREKGFKAVKEFLNEQLENIDLNYPNLVVAYEPIWAIGTKKS----ASLEE 174 E TT K F +K+ LN +L N + N N + EPI+A KK ASLEE Sbjct: 855 QAEATTLSKNFSDIKKELNAKLGNFN-NNNNNGLKNEPIYAKVNKKKAGQAASLEE 909
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 6e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.5 bits (113), Expect = 4e-08 Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 16/271 (5%) Query: 28 LILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFLICYFD 87 L+ S +T H L + LM + L LS + +S A+ + I Sbjct: 35 LVHSNDVTAHYGILLALYALMQFACAPVLGA-LSDRFGRRPVLLVSLAGAAVDYAI--MA 91 Query: 88 SIPFFW-LWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGFIFSAVGIGSVFSGFV 146 + PF W L+I R +AG+ + A + ++RA GF+ + G G V + Sbjct: 92 TAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVL 150 Query: 147 LPWISSYNIKWAWIFLGGSCLIAFILSLIGLKN-HSLRKKSVKKEESAFKIPFHL----- 200 + ++ + + F+ L H ++ +++E F Sbjct: 151 GGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMT 210 Query: 201 ---WLLLISCALNAIGFLPHTLFWVDYLIRHLNISPTTAGTSWALFG-FGATLGSLISGP 256 L+ + + +G +P L WV + + TT G S A FG + ++I+GP Sbjct: 211 VVAALMAVFFIMQLVGQVPAAL-WVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGP 269 Query: 257 MAQKLGAKNANIFILILKSIACFLPIFFHQI 287 +A +LG + A + +I L F + Sbjct: 270 VAARLGERRALMLGMIADGTGYILLAFATRG 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 60.1 bits (145), Expect = 1e-11 Identities = 41/217 (18%), Positives = 78/217 (35%), Gaps = 17/217 (7%) Query: 162 LPTLNAQEEKEEVEEEVKETPQEEEKTKDDEMQEGETLKDKEVSKELETQE----ELEIP 217 P+ + E ++E K + E+ + Q E K+ + + + TQ + Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 218 KEETQEQAKEQEPI--KEETQEEVKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQE 275 +ETQ ++ KEE + E+TQ E + +Q SP ++ E +Q + +E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQ---EVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 276 NSNGQE-DKKEAQENAEIPQENAEIPQENAEIPQENMEIPQEKEKQELEIPKEETQENTE 334 N + ++Q N E + +E P+ T T+ Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Query: 335 APQESTETPQKETQEKKAQEDHYESIEDIPEPVMAQA 371 P ++E+ K + H S+ +P V Sbjct: 1209 -PTVNSES------SNKPKNRHRRSVRSVPHNVEPAT 1238 Score = 59.7 bits (144), Expect = 2e-11 Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 29/274 (10%) Query: 182 PQEEEKTKDDEMQEGETLKDKEVSKELETQEELEIPKEETQEQAKEQEPIKEETQEEVKE 241 P+ E++ + + T + + EI + + ET E V E Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 242 ETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQEDKKEAQENAEIPQEN--AEI 299 +++ + ++ QD+ N + K+ Q N A+ Sbjct: 1043 NSKQESKTVEKNEQDATET--------------TAQNREVAKEAKSNVKANTQTNEVAQS 1088 Query: 300 PQENAEIPQENMEIPQEKEKQELEIPKEETQENTEAPQESTETPQKETQ--------EKK 351 E E + EK+E K ET++ E P+ +++ K+ Q E Sbjct: 1089 GSETKETQTTETKETATVEKEEKA--KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 352 AQEDHYESIEDIPEPVMAQAMGEALPFLNESVAKTPNNENDTETPKESVIKTPQEKEESD 411 + D +I++ A E S + P E+ T SV++ P+ + Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 412 KTSSPLELRLNLQDLLKSLNQESLKNLLENKTLS 445 + + K+ ++ S++++ N + Sbjct: 1207 TQP---TVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 56.2 bits (135), Expect = 2e-10 Identities = 41/204 (20%), Positives = 64/204 (31%), Gaps = 13/204 (6%) Query: 153 EEPNNEEQLLPTLNAQEEKEEVEEEVKETPQEEEKTKDDEMQEGETLKDKE-VSKELETQ 211 E N ++ T +E +E + VK Q E + ET + + +KE T Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ----SGSETKETQTTETKETATV 1106 Query: 212 EELEIPKEETQEQAKE-----QEPIKEETQEEVKEETQEIKEEKQEKTQDSPSAQE--LE 264 E+ E K ET++ + Q K+E E V+ + + +E P +Q Sbjct: 1107 EKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTA 1166 Query: 265 AMQELVKEIQENSNGQEDKKEAQENAEIPQENAEIPQENAEIPQENMEIPQEKEKQELEI 324 ++ KE N + EN E P N E K K Sbjct: 1167 DTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSES-SNKPKNRHRR 1225 Query: 325 PKEETQENTEAPQESTETPQKETQ 348 N E S+ Sbjct: 1226 SVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 41.6 bits (97), Expect = 6e-06 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 7/166 (4%) Query: 148 KALAQEEPNNEEQLLPTLNAQEEKEE----VEEEVKETPQEEEKTKDDEMQEGETLKDKE 203 A + E + A EKEE E+ +E P+ + + Q E Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144 Query: 204 VSKELETQEELEIPKEETQEQAKEQEPIKEETQEEVKEETQEIKEEKQEKTQDSPSAQEL 263 ++E + ++ P+ +T A ++P KE + + T+ ++P Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 264 EAMQELVKEIQEN---SNGQEDKKEAQENAEIPQENAEIPQENAEI 306 Q V N + + + N E ++ A Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (485), Expect = 4e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.4 bits (63), Expect = 0.013 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 102 RGETILKALERIAFE---EFQLNSLHLEVMENNFKAIAFYEKNHYELEG 147 R + + AL A E E L LE + N A FY K+H+ + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGA 150
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.6 bits (64), Expect = 0.013 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLVILVDIWVYSDVRQFLL-DTASSPILLLAALLIKW 87 V VA ++A +L +LV L I D+ + LL D + P LL LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLP-LLWGGLLFNL 174
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.008 Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 30 VVALLGESGAGKSTILRILAGLE 52 V L G G GKST++ L GL+ Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 194 bits (495), Expect = 2e-56 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDESLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPANPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF03944#delta endotoxin Length = 633 Score = 30.4 bits (68), Expect = 0.010 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASRFLALVPLSAKKSQNLN 161 + L +L ++Q + L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.0 bits (65), Expect = 0.035 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------ESELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 39.1 bits (91), Expect = 2e-04 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 23/204 (11%) Query: 125 YQEETIKA---NHFEDSSKESKESSDHLDNSTETKTNFDGEKSEETQTQMDSGDNETSES 181 QE +K N F D SK S D L ET + S E+Q M+ DN +++ Sbjct: 693 AQESLVKQIVQNKFTDLSKASI-PPDTLKLIRETTEKTFIDLSNESQISMNRVDNFLNKA 751 Query: 182 S------NLADKLFKKARKLVDNKRPFTQQKNLDEEIQE-----PNEEDDQENNGYQEEI 230 S ++ K K ++N E IQ NE+ N+ + I Sbjct: 752 SICVFVEDIYPKFISYMEKYINNIN-----IKTREFIQRCTNINDNEKSILINSYTFKTI 806 Query: 231 QMDLIDDETSKKTQQHSPQDLSNEETIKANHFEDSSKESKESSDHHLDNPTETKTNFDEY 290 +D ++ K + + E + ++ SK + + +++ + T Sbjct: 807 DFKFLDIQSIKNFFNSQVEQVMKEIL---SPYQLLLFASKGPNSNIIEDISGKNTLIQYT 863 Query: 291 KSEEITNDSNDQEIIKGSKKKYII 314 +S E+ N + + S + I Sbjct: 864 ESIELVYGVNGESLYLKSPNETIK 887
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 862 bits (2227), Expect = 0.0 Identities = 510/522 (97%), Positives = 513/522 (98%), Gaps = 1/522 (0%) Query: 1 MEQAFFKKFVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAFFKK VGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSSLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKS+LMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EEAVKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EEAV+QRAKDKI+IKTDK QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIE ELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 118 bits (298), Expect = 6e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIRREKVKNSPLTRLTFFITIKITPDTMENYEYITKKEVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.8 bits (74), Expect = 0.002 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 13/116 (11%) Query: 24 AINTALLPSEYKKLVALGFKKLYQRHDDKEVTEEEKKFAINALREKLRNDRARAEQIQKN 83 A+N AL+ +Y++ L KKL D + EE+KK L ++ EQ QK Sbjct: 112 AVNFALMTRDYQEF--LKTKKLIVDAPDPKELEEQKK--------ALEKEKEAKEQAQK- 160 Query: 84 IEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEM 139 A + K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 161 --AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.5 bits (74), Expect = 0.009 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIALVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF07132#Harpin protein (HrpN) Length = 356 Score = 30.8 bits (69), Expect = 0.001 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 36 FLGGAVGGAVGGAMEVAVGGAVGGAIGGPAGSTWGGRIGGTFGGGLGREFGREIGD 91 F+G +GG +GG + G +G ++GG G GG +GG G LG G +G Sbjct: 60 FMGSMMGGGLGGGL-----GGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 276 bits (708), Expect = 2e-96 Identities = 113/245 (46%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 +KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 41.3 bits (97), Expect = 5e-06 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDERELGVACVDIGGETCNLTIYSGNSIRYNKYLPIGSHHLSTDLSSMLNTP 270 AA+I G VDIGG T + + S N + Y+ + IG + + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 271 F------PYAEEVKIKYGNLSFESGEETPSQSVQIPTTGSDGNESHVVPLSKIQNIMRDR 324 + AE +K + G+ G+E V+ + ++I +++ Sbjct: 206 YGSLIGEATAERIKHEIGSAY--PGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFQIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELAKAHFTNYPVRLAA-PM 380 + +++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL-MEETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.4 bits (112), Expect = 2e-07 Identities = 48/336 (14%), Positives = 109/336 (32%), Gaps = 40/336 (11%) Query: 3 ENEELELGAKVAELDKRAAGLDERENQLNKRQKQLKTDIDAFNQEKEAYLKNQKEFEDFM 62 + + + L + + L L +L ++ ++ K+ E + Sbjct: 56 QERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKI 115 Query: 63 EDKEVFKKEQVQKVKESLRTYEKEQKELILETIGKQLQEQQESLNKDYGKKLESIKEHSD 122 ++ E K + + ++ ++ + ++L + Sbjct: 116 QELEARKADLEKALEGAMNFS-------------TADSAKIKTLEAEKAALAAR------ 156 Query: 123 RLENNLKTQFDAQLERWEQNFKGYEQQLTGILNDKAQLDLDKERFNAQKQAFENHIKQRE 182 K + LE ++ + +KA L+ + + N Sbjct: 157 ------KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 210 Query: 183 EEIKKENQNEIVHLNKDKSDLHRQLDEMANEMNALRQKNRELKEKIDWQKDYDMEKLEQD 242 +IK + E L K+DL + L+ N A K + L+ + LE Sbjct: 211 AKIKTL-EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEK--------AALEAR 261 Query: 243 NRDLEKCKKDLLVANENLKNRIQELENEKNKLDPRDERIKELEEEKRELEGIRAQKEDAE 302 +LEK + + + +I+ LE EK L+ E + + + + + A ++ Sbjct: 262 QAELEKALEGAMNFSTADSAKIKTLEAEKAALE------AEKADLEHQSQVLNANRQSLR 315 Query: 303 QKYNILLARNNQLEVDLVSLEAALNILKERFENLKN 338 + + QLE + LE I + ++L+ Sbjct: 316 RDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRR 351 Score = 42.0 bits (98), Expect = 8e-06 Identities = 46/294 (15%), Positives = 106/294 (36%), Gaps = 13/294 (4%) Query: 71 EQVQKVKESLRTYEKEQKELILETIGKQLQEQQ-ESLNKDYGKKLESIKEHSDRLENNLK 129 + ++KV+E +E E L L+ + + N + ++L + KE + + +L Sbjct: 50 DTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLS 109 Query: 130 TQFDAQLERWEQNFKGYEQQLTGILNDKAQLDLDKERFNAQKQAFENHIKQREEEIKKEN 189 + ++++ E E+ L G +N + A+K A E+ ++ Sbjct: 110 EK-ASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALE--- 165 Query: 190 QNEIVHLNKDKSDLHRQLDEMANEMNALRQKNRELKEKIDWQKDYDMEKLEQDNRDLEKC 249 ++ + S + L+ + A + + + E D K++ + Sbjct: 166 --GAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 223 Query: 250 KKDLLVANENLKNRIQELENEKNKLDPRDERIKELEEEKRELEGIRAQKEDAEQKYNILL 309 + L+ + + K+ + LE + ELE E A Sbjct: 224 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELE---KALEGAMNFSTADS 280 Query: 310 ARNNQLEVDLVSLEAALNILKERFENLKNMYVGVEDLKKRQENIKEQIAKTKPK 363 A+ LE + +LEA L+ + + L + L++ + +E + + + Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLN---ANRQSLRRDLDASREAKKQLEAE 331 Score = 38.9 bits (90), Expect = 6e-05 Identities = 61/296 (20%), Positives = 110/296 (37%), Gaps = 21/296 (7%) Query: 3 ENEELELGAKVAELDKRAAGLDERENQLNKRQKQLKTDI---DAFNQEKEAYLKNQKEFE 59 E E+ L A+ A+L+K G + + K L+ + +A E E L+ F Sbjct: 147 EAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFS 206 Query: 60 DFMEDKEVFKKEQVQKVKESLRTYEKEQKELILETIGKQLQEQQESLNKDYGKKLESIKE 119 K + + + EK + + + ++L + E Sbjct: 207 TADSAKIKTLEAEKAALAARKADLEKALEGAMNF--STADSAKIKTLEAEKAALEARQAE 264 Query: 120 HSDRLE--NNLKTQFDAQLERWEQNFKGYEQQLTGILNDKAQLDLDKERFNAQKQAFENH 177 LE N T A+++ E E + + + L+ +++ A Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREA 324 Query: 178 IKQREEEIKK-ENQNEIVHLNKDKSDLHRQLDEMANEMNALRQKNRELKEKIDWQKDYDM 236 KQ E E +K E QN+I + L R LD +RE K++++ + Sbjct: 325 KKQLEAEHQKLEEQNKI--SEASRQSLRRDLDA-----------SREAKKQLEAEHQKLE 371 Query: 237 EKLEQDNRDLEKCKKDLLVANENLKNRIQELENEKNKLDPRDERIKELEEEKRELE 292 E+ + + ++DL + E K + LE +KL ++ KELEE K+ E Sbjct: 372 EQNKISEASRQSLRRDLDASREAKKQVEKALEEANSKLAALEKLNKELEESKKLTE 427
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 30.3 bits (68), Expect = 0.044 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%) Query: 264 LKIESVSKEGENLKIRFKPALDKNKMEILKKKSQLKEGSDLGVL--KDLDTQNEESLINF 321 I + K N+ I+ + + + +KS L + K LD Q+ ++ N Sbjct: 763 KFISYMEKYINNINIKTREFIQRCTNINDNEKSILINSYTFKTIDFKFLDIQSIKNFFNS 822 Query: 322 ISKQ--NKQTSPNN-----SEKKETITIKDISGDDFIIDYNPSIKE-----SDAFYLN 367 +Q + SP S+ + I+DISG + +I Y SI+ ++ YL Sbjct: 823 QVEQVMKEILSPYQLLLFASKGPNSNIIEDISGKNTLIQYTESIELVYGVNGESLYLK 880
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 32.8 bits (75), Expect = 0.002 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 23/152 (15%) Query: 165 FLLLVLAQILLIGLILIIVLITLVETLTWLSLGFAVLPLALFPQTKGM-LFSYLKKLISL 223 + VL + + L+ V + + GF + A+ P K + K++ S+ Sbjct: 75 VVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSI 134 Query: 224 TFYQPCIMVVSFLNFSMIESITLKIPTQAEIINGFYNKGHIVDQMIENGSNQAINNFQNA 283 S + F ++SI LK+ I+ KG++V + Sbjct: 135 K---------SLVEF--LKSI-LKV-VLLSILIWIIIKGNLVTLLQLPTCG--------- 172 Query: 284 MGAYTSVLGFFIILILGSVICFFLIKRVPDFI 315 + T +LG + ++ F++ + D+ Sbjct: 173 IECITPLLGQILRQLMVICTVGFVVISIADYA 204
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 95.7 bits (238), Expect = 2e-25 Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 15/191 (7%) Query: 107 VFFFALALIEAIIIIIICLLPLKEKVPYLVTFSNATQNFAIVQR--ADKSIRANQALIRQ 164 V A AL A ++ + L PLK PY++T T +I + D +I ++A+ + Sbjct: 38 VAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLHGDATITYDEAVRKY 97 Query: 165 LIASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEKLVSYEH-----SIYTNIN 217 +A+YV RE + +E + + + SA D + + ++ +I N Sbjct: 98 FLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSRFYKTDNPQSPQNILAN-R 152 Query: 218 LTRKISIINIALISKTQANIEISAQLFNKEKLESEKRYRIIMTFEFEPIEIDTKSVPLNP 277 + I ++ + A + + + ++ + ++ + NP Sbjct: 153 TDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATIKYKVDGTPSKEVDRFKNP 211 Query: 278 TGFIVTGYDVT 288 G+ V Y Sbjct: 212 LGYQVESYRAD 222
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.9 bits (64), Expect = 0.011 Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 80 IENIFANEKEDTTYIITSYLNKEELFEKKPELK 112 + N+ A+EK D ++++ L+ E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.3 bits (73), Expect = 0.003 Identities = 25/145 (17%), Positives = 48/145 (33%) Query: 27 GATKKELKQLQVNSKNFSNILTKIHSQVEANTQAQEGLRSVYEGQANKIKDLNNAILSQE 86 K + ++ +A EG + + KIK L + E Sbjct: 200 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 259 Query: 87 ESLRALKALQEVQANTLKQQSQTLEDLGNEIHANQQAIQQLDKQNKEMSELLTKLSQDLV 146 L+ E N S ++ L E A + L+ Q++ ++ L +DL Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLD 319 Query: 147 SQIALIQKALKEQEEKAEKPLKSNA 171 + ++ E ++ E+ S A Sbjct: 320 ASREAKKQLEAEHQKLEEQNKISEA 344
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 142 bits (359), Expect = 8e-44 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 22/168 (13%) Query: 22 NMDKETVAGDVSAKAVQSAPVSTETVQEKQEPKQEPAPVVEKKPAVESGTIIASIYFDFD 81 D ++ VS + Q P PAP V+ K T+ + + F+F+ Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVV------APAPAPAPEVQTK----HFTLKSDVLFNFN 226 Query: 82 KYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALI 138 K +K Q LD++ + V++ G TD GS YNQ L +R SV + LI Sbjct: 227 KATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLI 286 Query: 139 IKGVEKDMIKTISFGETKPKCTQ-----KTR----ECYKENRRVDVKL 177 KG+ D I GE+ P K R +C +RRV++++ Sbjct: 287 SKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>PF07675#Cleaved Adhesin Length = 1358 Score = 28.9 bits (64), Expect = 0.026 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 6/105 (5%) Query: 69 QISQVILKTQMPFLDLVPSNLGLAGFEKTFYDSVQDENKRGELMLKNALESVV--GLYDY 126 VI T F SNL A FE + +++ E V+ G+YDY Sbjct: 414 TFGSVIPATGPLFTGTASSNLYSANFEYLTPANADPVVTTQNIIVTGQGEVVIPGGVYDY 473 Query: 127 VIIDSPPALGPLTINSLSAAHSVIIPIQCEFFALEGTKLLLNTIR 171 I + PA G + I A P + + FA E K T+R Sbjct: 474 CITNPEPASGKMWI----AGDGGNQPARYDDFAFEAGKKYTFTMR 514
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 28.8 bits (64), Expect = 0.027 Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 70 ELEVQILKDLKPDFIVVVAYGKILPKEVLSIAP 102 E +++L ++KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 28/195 (14%), Positives = 71/195 (36%), Gaps = 19/195 (9%) Query: 27 QIELENQSRF-LAQQKEFEKEVKEKRAQYQSHFKALEQKEEALKEREKEQKAKFDDAVKQ 85 +++L ++ F ++E + + Q+ + QKE L ++ E+ + Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 86 ASALALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKREN 145 + ++ R + + LE + + E EL ++++E+++ E Sbjct: 227 ENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEI 282 Query: 146 NEAESRLKAENEKKLNEKLETERERIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAE 205 A+ + + NE L+ R+ + +L + + +A Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNI---------GLLTLELAKNEERQQASVIRAP 333 Query: 206 LSSQQFQGEVQELAI 220 +S +VQ+L + Sbjct: 334 VS-----VKVQQLKV 343
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 38.7 bits (90), Expect = 3e-05 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 26/120 (21%) Query: 111 VIQSIDTKRITE------LLEKNYIVVIAG-------FQGADIQGETTTLGRGGSDLSAV 157 V+ S D K E L+E+ IV+ +G + +I+G + + DL+ Sbjct: 164 VVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDK---DLAGE 220 Query: 158 ALAGALKAHLCEIYTDVDGVYTTDPRIEEKAQKIAQISYDEMLELA--------SMGAKV 209 LA + A + I TDV+G EK Q + ++ +E+ + SMG KV Sbjct: 221 KLAEEVNADIFMILTDVNGAALYYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKV 278
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 30.3 bits (68), Expect = 0.003 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 10/83 (12%) Query: 69 LGIGSMF-----AGLGVVLAVPTLVGWLFGRSGLTAGERFVVFILGAFSLASLVGMIYCG 123 LG+G A + P G G G+ G + G+F+L G + Sbjct: 109 LGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADA 168 Query: 124 YGIITDFSALSAAMWWWSLSKIT 146 + LS W S+ K T Sbjct: 169 L-----YPVLSWLTWPMSVGKWT 186
>PF05844#YopD protein Length = 295 Score = 25.0 bits (54), Expect = 0.035 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSE 74 KQK E Sbjct: 256 KQKVE 260
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 4e-23 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVSCAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFRRIKNDFLISAPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 30.2 bits (68), Expect = 0.012 Identities = 7/45 (15%), Positives = 16/45 (35%) Query: 122 GSHGEYFRNRASTKNIQFPYSHYLSHICLGILYTRSASSGIDETE 166 GSH Y+ + Q + I + Y+ + ++ + Sbjct: 547 GSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRD 591
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 220 bits (561), Expect = 1e-76 Identities = 63/148 (42%), Positives = 95/148 (64%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIIAVAYSCAKNPMFSLKERLEMMQLATKNFK 63 IYPG+FDP+T GH+DII R LF+++ +AV + K PMFS++ERLE + A + Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 112 bits (281), Expect = 7e-29 Identities = 77/401 (19%), Positives = 155/401 (38%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPLN-TYEHQERDLDFKGLLDILE 170 K + + I++ F FN N +G LN + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQALLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINKHESRVVLKDFED---KECAIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQMNYVKGA---------KEESVLEMFM---PVKNSKTKRPMSGYEVLYY 334 +E++ + + + + A K+E + ++ + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENTKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEVIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NAPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 25.9 bits (57), Expect = 0.039 Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 66 NAIAVRNLDRVKKDEVLIYTKIESLEKRVKQLEQQLQQAK 105 I V+ + V+K +VL+ E + + L QA+ Sbjct: 108 KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQAR 147
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 130 bits (328), Expect = 2e-39 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEYLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.004 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 190 KEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 247 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 248 IFNDKQFTYFKF 259 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 50.9 bits (122), Expect = 2e-09 Identities = 52/346 (15%), Positives = 107/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMSDLSAYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + AY NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFVMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKMVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 150 bits (379), Expect = 2e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.015 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 360 bits (925), Expect = e-126 Identities = 119/345 (34%), Positives = 192/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNSS-----------NLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ S SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEPLDN--------SKNAQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.006 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 30.3 bits (68), Expect = 0.021 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 24/198 (12%) Query: 52 QELKQLIRDGAVRLQTSAIPLSY-----YLDILGNKTKTLLSESMKDNAQPSQQNGQSHQ 106 +KQL R A + T I L Y +++L + T+ SE + + Sbjct: 254 AMIKQLDRQQATQGNTKVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIK 313 Query: 107 ALVNLEQSLGILG--KLLDLSQQYANQGVIKPLVVDVGKEQIGITDSMLSVAQNIVLALG 164 A +L + +++ ++ Q +D+ + Q+ + + V L LG Sbjct: 314 AHGQT-NALIVTAAPDVMNDLERVIAQ-------LDIRRPQVLVEAIIAEVQDADGLNLG 365 Query: 165 ---QVDLSKIQQNNNNGQLYENIMKVMLLGAGGTNGAYNGVSVGDIATGMQNFSSQTGLI 221 + + Q N+G + AG +G +A+ + +F+ Sbjct: 366 IQWANKNAGMTQFTNSGLPISTAI------AGANQYNKDGTVSSSLASALSSFNGIAAGF 419 Query: 222 GANSTVGELNALINSGTS 239 + L AL +S + Sbjct: 420 YQGNWAMLLTALSSSTKN 437
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 1e-04 Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 6 KEDLEQARPKQELEKQKVELEKQKQEKQDKPEQEKKEPESKEQEEE 51 +E ++A+ + Q E+ + E ++ E KE + E+EE+ Sbjct: 1066 REVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Score = 29.3 bits (65), Expect = 0.033 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Query: 10 EQARPKQELEKQKVELEKQKQE----KQDKPEQEKKEPESKEQEEEK 52 ++ ++ EK KVE EK ++ Q P+QE+ E + E + Sbjct: 1101 KETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 553 bits (1426), Expect = 0.0 Identities = 179/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 350 bits (900), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAKKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.2 bits (68), Expect = 0.010 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEA 102 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEK 223
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 39.0 bits (90), Expect = 8e-06 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 18/223 (8%) Query: 38 NGAPLETPNPEE----PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KAL 92 + P +T P++ E I + + L L +LQMQ A E+ +A Sbjct: 3 DNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAG 59 Query: 93 IENAKNDGYKIGFKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKKSQDHLMALE--- 149 I + G+K G++EG + L + E K+Q + + + + Q L AL+ Sbjct: 60 IAEGRQQGHKQGYQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVI 116 Query: 150 -KELSAIAIDIAKEVILKEVEGNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNER 208 L +A++ A++VI + ++ + + + L + L + L+V+P D +++ Sbjct: 117 ASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDM 176 Query: 209 LQNASKI---KLESNEAISKGGVMITSSNGSLDGNLMERFKTL 248 L + +L + + GG +++ G LD ++ R++ L Sbjct: 177 LGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 141 bits (357), Expect = 1e-37 Identities = 103/454 (22%), Positives = 180/454 (39%), Gaps = 87/454 (19%) Query: 3 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 59 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 60 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANVYIAL 119 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 120 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSGANEVSAKARLGIKD--------- 170 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 171 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 198 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 199 F--------------------DNYLGALALVRIMDGSINAEQEILVMGTGKKHGVLGLYY 238 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 239 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 295 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 296 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 355 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 356 EREFGLNLIATAPTVVY-EVHL-TDNSIKHVQNP 387 + ++ + + PTV+Y E L H++ P Sbjct: 404 QEKYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP 437 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 399 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 458 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 459 LKSCTKGYASFDYEP 473 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 29.5 bits (66), Expect = 0.016 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMAVQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.9 bits (101), Expect = 1e-06 Identities = 59/315 (18%), Positives = 106/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSQTTSKTTIREETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFILFQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I+F + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>PF07520#Virulence protein SrfB Length = 1041 Score = 29.2 bits (65), Expect = 0.010 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 121 LEAQDNKIAAIGSGG---NFALSAARALDNFAHLEPRKLVEESLKIAGD 166 E+ ++A I GG + ++ R DN L P + E ++AGD Sbjct: 590 GESPSLRLACIDVGGGTTDLMVTTYRGEDNRV-LHPEQTFREGFRVAGD 637
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.042 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 48 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 80 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.5 bits (69), Expect = 0.003 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 88 LQSYSVMLFFNLLLLIDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLL 151 S ++ Sbjct: 101 SHVV 104
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 50.4 bits (120), Expect = 2e-09 Identities = 24/58 (41%), Positives = 28/58 (48%) Query: 83 APKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEE 140 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVES 119 Score = 45.7 bits (108), Expect = 7e-08 Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 50/225 (22%) Query: 84 PKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEEKKI 143 P + P +P P P P P P E P KPKPKP+PK K +KKV+E+ Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP-----KPVKKVQEQPK 111 Query: 144 VEEKKEEKKIVEQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRD 203 + K E + ++ + + + Sbjct: 112 RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ--------- 162 Query: 204 IDELYGEEFGDLGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNG 263 YP A L +G V+F + P+G Sbjct: 163 ------------------------------------YPARAQALRIEGQVKVKFDVTPDG 186 Query: 264 DITDLKIIIGSEYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 308 + +++I+ M + ++ + +P + ++ I + Sbjct: 187 RVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 38.4 bits (89), Expect = 2e-05 Identities = 16/54 (29%), Positives = 23/54 (42%) Query: 74 QDPSKNTQGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q + +P P P P+ PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 33.8 bits (77), Expect = 5e-04 Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 74 QDPSKNTQGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P + P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 30.3 bits (68), Expect = 0.008 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPSKNTQGAPKPTLAGPQKPPTPPTPPIPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 99 bits (249), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 28.2 bits (62), Expect = 0.021 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 21 NQTTELHHKNPYELLVATILSAQCTDARVNKITPKLFEKYPSVKDLAL-----ASLEEVK 75 N+ E+ K E A ++ + T +I + K P+ K+L L A +E+VK Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 76 EIIKSVSYFNNKSKHLINMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 127 E + + +++ + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 243 bits (620), Expect = 2e-76 Identities = 125/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVRAHASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIRLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQNL---G 411 ++S L ++ TVN + T N + + +G + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.007 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.028 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIKTDIKRVTKLYDEGLTTIDDL-----QSLKAQGNLSEY--DILDIK 255 LAR+ + K+ + + L + + + ++A L Y + I+ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQD-LVSLREQISALKYQ 307 + + + +T K +D +LR+ D + L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 52.1 bits (125), Expect = 5e-10 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 18 ASEKVYAIFNVKAVQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQEKQAQSDSTE 77 A+ K+ K ++ IV I V EG V+KGDVLL L +A + T+ Sbjct: 86 ANGKLTHSGRSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQ 140 Query: 78 QQLIFAKKQYQRYSKTGGAVDKNTLESYEFN 108 L+ A+ + RY +++ N L + Sbjct: 141 SSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Score = 29.4 bits (66), Expect = 0.012 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKTGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 891 bits (2303), Expect = 0.0 Identities = 286/1038 (27%), Positives = 518/1038 (49%), Gaps = 41/1038 (3%) Query: 1 MYKTAINRPITTLMFAFAIIFFGVMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSALKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 ISIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + ++ F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFRAKIFVQLKPLKERKKEHELGQFELMSALRKELRS 631 + + E FT + G QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKGLESIDLSEVSLIGGGGDSSSFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + ++ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKQDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPA 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + A Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 -GISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIALATAFVLIYMILAAL 870 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 871 YESILEPLIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 930 YES P+ +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 931 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 989 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 990 MISMVLSLLIVPVFYRLL 1007 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 275 bits (705), Expect = 8e-77 Identities = 102/394 (25%), Positives = 181/394 (45%), Gaps = 14/394 (3%) Query: 2776 NAVNWLNALFVAKGGNPLFAPYYLQDTPTKHIVTLMKDVSSALGMLSKPNLKNNSTDVLQ 2835 + L L + + +A + T I + ++ L ++ K + L Sbjct: 907 QGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLS 965 Query: 2836 LNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDVILKYSQRDKLKNN 2895 L+ RL LS + F++RL +LK+QRFA + +A +V+ +++ + + N Sbjct: 966 LSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEKPTN 1024 Query: 2896 LWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITSSKS 2950 +WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + +S + Sbjct: 1025 VWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGA 1084 Query: 2951 DNVDVGLYARAFIKKSELTFSVNEAWGANKTQISSNDSLLSMINQSYQYSTWTTNARVNY 3010 +N + G+Y+R F + E F A G++++ ++ +LL +NQSY Y ++ R +Y Sbjct: 1085 NNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASY 1144 Query: 3011 GYDFMFKNKSVIIKPQISLRYYYIGMTGLEGVMNNALYNQFKANADPSKKSVLTIDFAFE 3070 GYDF F ++++KP + + Y ++G T + + S + + E Sbjct: 1145 GYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASANVE 1200 Query: 3071 NRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNTLSYRKGELYNTFASITTGGEVR 3130 R+Y+ SYFY G+ ++ + V + R NT A + GGE++ Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGGELK 1257 Query: 3131 LFKSFYANAGVGARFGLDYKTINITGNIGMRLAF 3164 L K + N G L + N+GMR +F Sbjct: 1258 LAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.4 bits (68), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVSSERRSSFNISLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 56.0 bits (135), Expect = 6e-11 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPNIS 253 IL+A+D + L + + N L ++ +V+TD+ MP+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKADSRTEHIPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK +PV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.015 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALS 359 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L +V+KA+S Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLA----KKDVAKAIS 234
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 2029 bits (5257), Expect = 0.0 Identities = 1174/1295 (90%), Positives = 1226/1295 (94%), Gaps = 5/1295 (0%) Query: 1 MEIQQTHRKINRPLVSLVLAGALISITPQQSHAAFFTTVIIPAIVGGIATGTAVGTVSGL 60 MEIQQTHRKINRPLVSL L GAL+SITPQQSHAAFFTTVIIPAIVGGIATG AVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LSWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 L WGLKQAEEANKTPDKPDKVWRIQAG+GFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKGGQWNKLEVDMKDAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSFKD 180 HYWVK GQWNKLEVDM++AVGTY LSGL NFTGGDLDVNMQKATLRLGQFNGNSFTS+KD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 GANRTTRVDFNAKNISIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYD 240 A+RTTRVDFNAKNI IDNFLEINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVAGEVNFSHLTVGDQNAAQA 300 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKV GEVNF+HLTVGD NAAQA Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQA 300 Query: 301 GIIASKKTYIGTLDLWQSAGLNIIAPPEGGYKDKPNNTTQNSAKNDKQNSAKNDKQKSSQ 360 GIIAS KT+IGTLDLWQSAGLNIIAPPEGGYKDKPN+ N+ QN+AKNDKQ+SSQ Sbjct: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNT----TQNNAKNDKQESSQ 356 Query: 361 DNSNTQVINPPDSGQKTEIQPTQVIDGPFAGGKDTVVNINRINTNADGTIRVGGYKASLT 420 +NSNTQVINPP+S QKTEIQPTQVIDGPFAGGK+TVVNINRINTNADGTIRVGG+KASLT Sbjct: 357 NNSNTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLT 416 Query: 421 TNAAHLHIGKGGVNLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFK 480 TNAAHLHIGKGG+NLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFK Sbjct: 417 TNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFK 476 Query: 481 AGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTGKVNINKL 540 AGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVT KVNINKL Sbjct: 477 AGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKL 536 Query: 541 ITASTNVAAKNFNINELIVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVK 600 ITASTNVA KNFNINEL+VKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSI+SGGVK Sbjct: 537 ITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVK 596 Query: 601 FKSGEKLVIDEFYYSPWNYFDARNIKNVEITKKFASSTPENPWGTSKLMFNNLTLGQNAV 660 FK GEKLVI++FYY+PWNYFDARNIKNVEIT K A +PWGT+KLMFNNLTLGQNAV Sbjct: 597 FKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAV 656 Query: 661 MDYSQFSNLTIQGDFINNQGTINYLVRGGNIETLSVGNAAAMMFNNDIDSATGFYKPLIK 720 MDYSQFSNLTIQGDF+NNQGTINYLVRGG + TL+VGNAAAM F+N++DSATGFY+PL+K Sbjct: 657 MDYSQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLMK 716 Query: 721 INSAQDLIKNTEHVLLKAKIIGYGNVSTGTNSISNVNLEEQFKERLALYNNNNRMDTCVV 780 INSAQDLIKN EHVLLKAKIIGYGNVS GT+SI+NVNL EQFKERLALYNNNNRMD CVV Sbjct: 717 INSAQDLIKNKEHVLLKAKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICVV 776 Query: 781 RNENDIKACGMAIGNQSMVNNPDNYKYLIGKAWKNIGISKTANGSKISVYYLGNSTPTEN 840 RN +DIKACG AIGNQSMVNNP+NYKYL GKAWKNIGISKTANGSKISV+YLGNSTPTEN Sbjct: 777 RNTDDIKACGTAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTEN 836 Query: 841 GGNTTNLPTNTTNNARSANYALVKNAPFA-HSATPNLVAINQHDFGTIESVFELANRSKD 899 GGNTTNLPTNTTN R A+YAL+KNAPFA +SATPNLVAINQHDFGTIESVFELANRS D Sbjct: 837 GGNTTNLPTNTTNKVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSND 896 Query: 900 IDTLYTHSGAQGRDLLQTLLIDSHDAGYARQMIDNTSTGEITKQLNAATTTLNNIASLEH 959 IDTLY +SGAQGRDLLQTLLIDSHDAGYAR MID TS EITKQLN ATTTLNNIASLEH Sbjct: 897 IDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEH 956 Query: 960 KQSGLQTLSLSNAMILNSRLVNLSRRHTNNINSFAQRLQALKGQRFASLESAAEVLYQFA 1019 K SGLQTLSLSNAMILNSRLVNLSRRHTN+I+SFA+RLQALK QRFASLESAAEVLYQFA Sbjct: 957 KTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFA 1016 Query: 1020 PKYEKPTNVWANAIGGASLNNGGNTSLYGTSAGVDAYLNGEVQAIVGGFGSYGYSSFSNQ 1079 PKYEKPTNVWANAIGG SLN+GGN SLYGTSAGVDAYLNGEV+AIVGGFGSYGYSSFSNQ Sbjct: 1017 PKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQ 1076 Query: 1080 ANSLNSGANNANFGVYSRIFANQHEFDFEAQGAVGSDQSSLNFKSALLRDLNQSYNYLAY 1139 ANSLNSGANN NFGVYSRIFANQHEFDFEAQGA+GSDQSSLNFKSALLRDLNQSYNYLAY Sbjct: 1077 ANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAY 1136 Query: 1140 SAAARTSYGYDFAFFRNALVLKPSVGVSYNHLGSTNFESNSTHKAALKNGASSQHLFNAS 1199 SAA R SYGYDFAFFRNALVLKPSVGVSYNHLGSTNF+SNS K ALKNGASSQHLFNAS Sbjct: 1137 SAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNAS 1196 Query: 1200 ANVEARYYYGDTSYFYMNAGVLQEFASVGSKTAASLNTFKVNVARNPLNTHARVMMGGEL 1259 ANVEARYYYGDTSYFYMNAGVLQEFA+ GS A SLNTFKVN RNPLNTHARVMMGGEL Sbjct: 1197 ANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGEL 1256 Query: 1260 QLAKEVFLNLGFIYLHNLISNIGHFASNLGMRYSF 1294 +LAKEVFLNLGF+YLHNLISNIGHFASNLGMRYSF Sbjct: 1257 KLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 81.6 bits (201), Expect = 2e-20 Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 10/246 (4%) Query: 1 MGEKKESQKVAVITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDIDVSDSSALKEAFLNISAKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS+A+ E I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNV 174 + + ++ I + S V + Y++SK A ++ L LEL +N+ Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFSVESFESENSLYALEVDAAKSFYSSVYQKALSAKAVAQKIV 234 + ++ PG +++ + + ++ E+ + ++ +K +A ++ Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQ----VIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 235 FLAMSQ 240 FL Q Sbjct: 237 FLVSGQ 242
>SECA#SecA protein signature. Length = 901 Score = 29.1 bits (65), Expect = 0.005 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 12/69 (17%) Query: 4 SPTKKDCTQYSEKQLFNLINQLEQKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++ N+IN +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQAF 72 L I +AF Sbjct: 60 LENLIPEAF 68
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 30.0 bits (67), Expect = 0.046 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 902 GITYADYEHKADVYKLFKDKIFNPKNDPHFKIKVVLKF-YGNKDKVADGYRDY 953 G TY DY+ A Y L++D ++P D +F Y D R + Sbjct: 79 GSTYPDYDKNA--YDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKF 129
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 474 bits (1222), Expect = e-171 Identities = 179/347 (51%), Positives = 248/347 (71%), Gaps = 2/347 (0%) Query: 2 IFSKLIGLFSHDIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEA 61 + K G+FS+D++IDLGTANT++ VKGQGI++NEPS+VA+R S + AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKS-VAAVGHDA 59 Query: 62 KEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKAHKRKAW-IRPRIMVCVPYGLT 120 K+MLG+TP +I AIRPMKDGVIAD+ +T KM+++FI++ H PR++VCVP G T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 SVERNAVKESALSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLG 180 VER A++ESA AGAREVFLIEEPMAAAIGAGLPV E GS++VDIGGGTTE+ VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLDPPLTMEVSGR 240 G+V S S+R+ GD+ D++I+ Y+R+ + LIGE T E IK EIG A D +EV GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 DQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVKPDLAKDIVQNGVVLTGGGAL 300 + G+ L+S+++ EA+++ + I SA+ LE+ P+LA DI + G+VLTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 IKGLDKYLSDMVKLPVYVGDEPLLAVAKGTGEAIQDLDLLSRVGFSE 347 ++ LD+ L + +PV V ++PL VA+G G+A++ +D+ FSE Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSE 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 40.6 bits (95), Expect = 1e-05 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 20/116 (17%) Query: 134 LEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD------IPI---AISDATSLTEAG 184 L + + +++ G +G+GK L+A+ L + + I AI L E+ Sbjct: 150 YRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPR--DLIESE 207 Query: 185 YVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS--------RLSENRSITR 232 G + T S ++A+ G +F+DEI + R+ + T Sbjct: 208 LFGH-EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTT 262
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 425 bits (1095), Expect = e-146 Identities = 162/581 (27%), Positives = 275/581 (47%), Gaps = 82/581 (14%) Query: 10 RLILAIALSFLFIAIYSYFFQKPNKTTTTKQETTNNHTTTSPNNTPNAFNATQAIPQENL 69 R +L IAL F+ I+ + Q N +Q T TT+ A A Q L Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQ----TTTTAAGSAADQGVPASGQGKL 60 Query: 70 LSTISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQ-----KGFLEHV----SHLFNPKA 118 + ++ + + I++ G + + K L Q + + + S L Sbjct: 61 I-SVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTGRDG 119 Query: 119 NPQPPLKELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLG 176 P PL +K A+ G NE V D Sbjct: 120 PDNPANGPRPLYNVEK---------------DAY-------VLAEGQNELQVPMTYTDAA 157 Query: 177 TLTIIKTLTFYDDLHYDLQIAFKSPN------------------KIIPSYVITNGYRPVA 218 T KT Y + + + N + P + + Sbjct: 158 GNTFTKTFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFAL- 215 Query: 219 DLDSYTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQG 275 +TF G D+K EK + D + + S +++ + +YF T + G Sbjct: 216 ----HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DG 270 Query: 276 FEALIDPEIGTKNPLGFISLKNEA-----------NLHGYIGPKDYRSLKAISPMLTDVI 324 +G N + I K++ N ++GP+ + A++P L + Sbjct: 271 TNNFYTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTV 328 Query: 325 EYGLITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAP 384 +YG + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ + P Sbjct: 329 DYGWLWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQP 388 Query: 385 RMKELQEKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKS 444 +++ ++E+ + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ Sbjct: 389 KIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQ 448 Query: 445 SEWILWIHDLSIMDPYFILPLLMGASMYWHQSVTPSSVTDPMQAKLFKFLPLLFTIFLIT 504 + + LWIHDLS DPY+ILP+LMG +M++ Q ++P++VTDPMQ K+ F+P++FT+F + Sbjct: 449 APFALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW 508 Query: 505 FPAGLVLYWTTNNILSVLQQLIINKVLENKKRAHAQSKKES 545 FP+GLVLY+ +N+++++QQ +I + LE K+ H++ KK+S Sbjct: 509 FPSGLVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 33.3 bits (76), Expect = 0.002 Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESTDKIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLIDTLN 318 + KV +IDT G + ++ R SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>BINARYTOXINB#Binary toxin B family signature. Length = 764 Score = 28.9 bits (64), Expect = 0.029 Identities = 12/60 (20%), Positives = 21/60 (35%) Query: 155 SKSMGDLLAKAMPIERILKAYSVPVSSLENYEKIYYQNAFKPKVQIIFDNNSDAEIKSAL 214 + + D L P + +A + E + YQ + FD + IK+ L Sbjct: 536 AVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQL 595
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 293 bits (752), Expect = e-105 Identities = 174/175 (99%), Positives = 175/175 (100%) Query: 1 MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+AAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 77.0 bits (189), Expect = 6e-22 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISAYKELLRTQI 109 VRNK ++AY+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 36.1 bits (83), Expect = 1e-04 Identities = 30/183 (16%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQATVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + +K R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.2 bits (78), Expect = 6e-04 Identities = 30/183 (16%), Positives = 76/183 (41%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPNLVVTFVG-NPKAVEHAKQFGIPILSFQERSIKEAMESIETQAKA----L 160 N+ELL ++ P+ +V G P A+ +F + AM A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL--KNVKNKKGVEFFDKPN-KVSGHKALDTDLLEKGGVD 217 + A LA+ ++ + +K R + + D + V G +L ++L++ G+ Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGSKYVKHGRAEINTEKIVK-ENPEIIFIWWISTLTPEDILNNPKFATIKAVKNKQVY 275 N + + G ++ +++ ++ +++ ++ + ++ P + + V+ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.031 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217