>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1043 bits (2698), Expect = 0.0 Identities = 352/569 (61%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIDVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HI+V+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 220 bits (561), Expect = 8e-77 Identities = 55/145 (37%), Positives = 89/145 (61%), Gaps = 7/145 (4%) Query: 8 VESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRLKQPNKNHMDMPSLHSLEHLVAEI 67 ++SF +DHT++ AP VR+A + GD I +D+R PNK+ + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 68 IRNHA----SYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKA---TEVPAS 120 +RNH ++D SPMGC+TGFY++++ + ++ + M+DVLK ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 121 NEKQCGWAANHTLEGAQNLARAFLD 145 NE QCG AA H+L+ A+ +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 30.6 bits (69), Expect = 0.016 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Query: 176 PISAMASAVGVPAILISAMTGKILFFVSLFV------PFFIVFLMDGFKGIKETFPAVFI 229 P A+ V +IL+S + K V F+ P LM ++ P + + Sbjct: 176 PCVLTVVAIAVVSILLSVVVPK---VVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLL 232 Query: 230 AAFSFAIA 237 A + +A Sbjct: 233 ALLAGFMA 240
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 28.7 bits (64), Expect = 0.019 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 146 FDTAYAEALTQKKVFGVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLDAIQRG 205 F +L ++K+ +++ ++ VEE YL + ++ +L + Sbjct: 60 FSERKELSLDKRKL------SDSQARVSDVEEQVNQYLSKVPELEQKQNVSELLSLLSNS 113 Query: 206 EVLEIVALIAYLNSLGN 222 + + L AYL Sbjct: 114 PNISLSQLKAYLEGKSE 130
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 169 bits (429), Expect = 6e-54 Identities = 58/254 (22%), Positives = 118/254 (46%) Query: 1 MLDFIQELSTPHVRDFFLLFLRVSGVLSFFPFFENHLVPLSVRGALSLYVSAIFYPTLEF 60 ML E + +F LRV ++S P VP V+ L++ ++ P+L Sbjct: 1 MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60 Query: 61 SNAAYTPEGFIIACLCELFLGVCASIFLQIVFASLVFATDSISFSMGLTMASAYDPISGS 120 ++ + + ++ +G+ +Q FA++ A + I MGL+ A+ DP S Sbjct: 61 NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL 120 Query: 121 QKPIIGQALLLLAILILLDLSFHHQIILFVDHSLKAVPLGQFVFEPALAKNIVKAFSHLF 180 P++ + + +LA+L+ L + H +I + + +P+G + KA S +F Sbjct: 121 NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF 180 Query: 181 VIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLAIGFPVKIAIGFVGIILIASAIMGRF 240 + G +A P++ L+L ++ G++ + PQ ++ IGFP+ + +G + + I Sbjct: 181 LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFC 240 Query: 241 KEEISLAFSAISKI 254 + S F+ ++ I Sbjct: 241 EHLFSEIFNLLADI 254
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 60.4 bits (146), Expect = 7e-13 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSPYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKPLYDSVKKDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + +++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSSGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.003 Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 12/69 (17%) Query: 4 SPTKKDYTQYSEKQLFNLINQLEQKIKKMQNDRASFKEKMAKELEKRDQNFKDKIDALNE 63 S + + +++ N+IN +E +++K+ ++ EL+ + F+ +++ Sbjct: 12 SRNDRTLRRM--RKVVNIINAMEPEMEKLSDE----------ELKGKTAEFRARLEKGEV 59 Query: 64 LLQKISQAF 72 L I +AF Sbjct: 60 LENLIPEAF 68
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 87.0 bits (215), Expect = 2e-22 Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 10/241 (4%) Query: 1 MGEKKESQKVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCVALNHALC------E 54 M K K+A ITGA+ GIG A L QG + A+ + + +L E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 55 SIDIDVSDSNALKEAFLNISTKEDHCDVLINSAGYGVFGSVEDTPIDEVKKQFGVNFFAL 114 + DV DS A+ E I + D+L+N AG G + +E + F VN + Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 CEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNI 174 + + ++ I + S V + Y++SK A ++ L LEL +NI Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 QVCLIEPGPVKSNWEKTAFENDERKDSLYALEVNAAKNFYSGV-YQKALSPKAVAQKIVF 233 + ++ PG +++ + + + ++ + + + + F +G+ +K P +A ++F Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 234 L 234 L Sbjct: 238 L 238
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 2019 bits (5231), Expect = 0.0 Identities = 1178/1291 (91%), Positives = 1230/1291 (95%) Query: 1 MELQQTHRKINRPLVSLALVGLLVSITPQKSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 ME+QQTHRKINRPLVSLALVG LVSITPQ+SHAAFFTTVIIPAIVGGIATGAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 LGWGLKQAEEANKTPDKPDKVWRIQAG+GFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKGGQWNKLEVDMKDAVGTYKLSGLRNYTGGDLDVNMQKATLRLGQFNGNSFTSFKD 180 HYWVK GQWNKLEVDM++AVGTY LSGL N+TGGDLDVNMQKATLRLGQFNGNSFTS+KD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 SADRTTRVDFNAKNISIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSGKNAEISLYD 240 SADRTTRVDFNAKNI IDNFLEINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDRNAAQA 300 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGD NAAQA Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQA 300 Query: 301 GIIASKKTYIGTLDLWQSAGLNIIAPPEGGYKDKPNNTNSQSGAKNDKNESAKNDKQDSN 360 GIIAS KT+IGTLDLWQSAGLNIIAPPEGGYKDKPN+ S + N KN+ ++ + +SN Sbjct: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNNSN 360 Query: 361 TQVINPPNSGQKTEIQPTQVIDGPFAGAKDTVVNINRINTNADGTIKVGGYTASLTTNAA 420 TQVINPPNS QKTEIQPTQVIDGPFAG K+TVVNINRINTNADGTI+VGG+ ASLTTNAA Sbjct: 361 TQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNAA 420 Query: 421 NLNIGKGGVNLSNQASGRSLLVENLTGNITVDGALMVNNQVGGYALAGSSANFEFKAGVD 480 +L+IGKGG+NLSNQASGRSLLVENLTGNITVDG L VNNQVGGYALAGSSANFEFKAG D Sbjct: 421 HLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTD 480 Query: 481 TKNGTIAFNNNISLGRFVNLKASAHTVNFKDIDTGNGGFNTLDFSGVTNKVNINKLITAS 540 TKNGT FNN+ISLGRFVNLK AHT NFK IDTGNGGFNTLDFSGVTNKVNINKLITAS Sbjct: 481 TKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITAS 540 Query: 541 TNVAIKNFNINELLVKTNGISVGEYTNFSEDIGNQSRINTVRLETGTRSIYSGGVKFKGG 600 TNVA+KNFNINEL+VKTNG+SVGEYT+FSEDIG+QSRINTVRLETGTRSIYSGGVKFKGG Sbjct: 541 TNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKGG 600 Query: 601 EKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGPNAVMDYS 660 EKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLG NAVMDYS Sbjct: 601 EKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAVMDYS 660 Query: 661 QFSNVTIQGNFINNQGTINYLVRGGNIETLNVGNAAVMSFNNDIDSATGFYKPLIKINSA 720 QFSN+TIQG+F+NNQGTINYLVRGG + TLNVGNAA M F+N++DSATGFY+PL+KINSA Sbjct: 661 QFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLMKINSA 720 Query: 721 QDLIKNKEHVLLKAKIIGYENASLGTNSISNANLIEQFNERLALYNNNNRMDTCVVRNTD 780 QDLIKNKEHVLLKAKIIGY N S GT+SI+N NLIEQF ERLALYNNNNRMD CVVRNTD Sbjct: 721 QDLIKNKEHVLLKAKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICVVRNTD 780 Query: 781 DIKACGMAIGDQAMVNNPDNYKYLIGKAWKNIGISKTANGSKISVRYLGNATPAENGGNT 840 DIKACG AIG+Q+MVNNP+NYKYL GKAWKNIGISKTANGSKISV YLGN+TP ENGGNT Sbjct: 781 DIKACGTAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTENGGNT 840 Query: 841 TNLPTNTTNNARFASYALIKNAPFAQTSATPNLVAINKHDFGTIESVFELANRSKDIDTL 900 TNLPTNTTN RFASYALIKNAPFA+ SATPNLVAIN+HDFGTIESVFELANRS DIDTL Sbjct: 841 TNLPTNTTNKVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSNDIDTL 900 Query: 901 YANSGAQGRDLLQTLLIDSHNAGYARTMIDATSANEITKQLNTATDALNNIASLEHKTSG 960 YANSGAQGRDLLQTLLIDSH+AGYARTMIDATSANEITKQLNTAT LNNIASLEHKTSG Sbjct: 901 YANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSG 960 Query: 961 LQTLSLSNAMILNSRLVNLSRRHTNNIDSFAKRLQALKDQKFASLESAAEVLYQFAPKYE 1020 LQTLSLSNAMILNSRLVNLSRRHTN+IDSFAKRLQALKDQ+FASLESAAEVLYQFAPKYE Sbjct: 961 LQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAPKYE 1020 Query: 1021 KPTNVWANAIGGASLNSGGNTSLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSL 1080 KPTNVWANAIGG SLNSGGN SLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSL Sbjct: 1021 KPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSL 1080 Query: 1081 NSGANNANFGVYSRIFANKHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYGAAT 1140 NSGANN NFGVYSRIFAN+HEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAY AAT Sbjct: 1081 NSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAAT 1140 Query: 1141 RASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFESNSTNKTALKNGASSQHLFNASANVE 1200 RASYGYDFAFFRNALVLKPSVGVSYNHLGSTNF+SNS K ALKNGASSQHLFNASANVE Sbjct: 1141 RASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASANVE 1200 Query: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNAARNPLNTHARVMMGGELQLAK 1260 ARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNA RNPLNTHARVMMGGEL+LAK Sbjct: 1201 ARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGELKLAK 1260 Query: 1261 EVFLNLGFIYLHNLISNAGHFASNLGMRYSF 1291 EVFLNLGF+YLHNLISN GHFASNLGMRYSF Sbjct: 1261 EVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.8 bits (66), Expect = 0.020 Identities = 13/37 (35%), Positives = 25/37 (67%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEIL 345 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVL 224
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.046 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Query: 51 TPKNILMIGSTGVGKTEIARRI---AKIMKLPFVKV 83 T +++ G +G GK +AR + K PFV + Sbjct: 159 TDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF03944#delta endotoxin Length = 633 Score = 32.7 bits (74), Expect = 0.002 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMFSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILAVSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 THKQVLQKLQEYQQYASQFLALVPLSAKKSQNLN 161 + L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.023 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 277 APENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQ--------EAELAKY--KLKDLE 326 S + EE+ E +E L K E ++ +Y K+ +LE Sbjct: 44 GTLQSIADMAEEVTF-----VFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELE 98 Query: 327 NQKKLKALEAELKKKN 342 ++ + L + L Sbjct: 99 QKQNVSELLSLLSNSP 114
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.7 bits (92), Expect = 2e-04 Identities = 40/260 (15%), Positives = 90/260 (34%), Gaps = 33/260 (12%) Query: 712 TPEAKKLLEEEAKESVKAYLDCVSQAKTEVEKKECEKLLTPEAKKKLEEAKKSVKAYLDC 771 P ++ + + ++KT + ++ T + ++ +EAK +VKA Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 772 VSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAK 831 A++ +E KE + T E + +++ KT E K + PK Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPK--------- 1132 Query: 832 ESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKEC 891 + ++E + + E + ++E + SQ T A+ ++ Sbjct: 1133 -----------QEQSETVQPQAEPARENDPTVNIKEPQ----------SQTNTTADTEQP 1171 Query: 892 EKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKA 951 K + ++ + E + + + T A + + K ++SV++ Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK--NRHRRSVRS 1229 Query: 952 YLDCVSQAKTEAEKKECEKL 971 V A T + + L Sbjct: 1230 VPHNVEPATTSSNDRSTVAL 1249 Score = 39.7 bits (92), Expect = 2e-04 Identities = 47/323 (14%), Positives = 108/323 (33%), Gaps = 16/323 (4%) Query: 9 ETSQKTQQHSPQDLSNEETTEANRFE----DSSKESEESSDHLDNPTETKTNFDEYESEE 64 ET++ ++S Q+ E E + E + E S+ N + E++E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 65 TQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQEPNEEDDQENN 124 TQT + + + ++ K+ P +Q + EP E+D N Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 125 --RYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDSSKESQESSEHHLDNPTE 182 Q +T ++ +K+T + Q ++ + + E+ + +E Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 183 TK---TNFDEYESEETQTQMDSGGNETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD 239 + N ++ +++ S +L D ++ + R Q L+ Sbjct: 1215 SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALN 1274 Query: 240 ------EETQEPNEEDDQENNRYQEETQMDL-IDDETSKKTQQHSPQDLSNEEATEANHF 292 + + ++ + N + T M+ ++ S Q + T +N+ Sbjct: 1275 VGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSKSTQTQLGWDQTISNNV 1334 Query: 293 EDSSKESQESSEHHLDNPTETKT 315 + + + ++ D T T Sbjct: 1335 QLGGVFTYVRNSNNFDKATSKNT 1357 Score = 38.9 bits (90), Expect = 3e-04 Identities = 32/191 (16%), Positives = 78/191 (40%), Gaps = 6/191 (3%) Query: 1027 RARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKL 1086 + NE+ + E + P A ++ + ++ ++KT + ++ T + +++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPAT--PSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 1087 LEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEE--AKESLKAYKDCVSRARN 1144 +EAK ++KA A++ E KE + T E + +E AK + ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 1145 EKEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQ 1204 K+E + + P+A+ E + K+ S+ + ++ K + ++ + + Sbjct: 1129 VSPKQEQSETVQPQAEPAREN--DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 1205 ALDCLKNAKTE 1215 N+ E Sbjct: 1187 TTVNTGNSVVE 1197 Score = 38.9 bits (90), Expect = 3e-04 Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 4/242 (1%) Query: 855 KLLTPEAKKL--LEEAKESLKAYKDCVSQAKTEAEKKECEKLLT-PEAKKLLEEEAKESV 911 L PE +K + + +E ++ P ++ + Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 912 KAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKL 971 + ++KT + ++ T + ++ +EAK +VKA A++ +E KE + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 972 LTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSRARNE 1031 T E + +++ KT E K + PK Q + + ++ A + + E Sbjct: 1099 ETKETATVEKEEKAKVET-EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 1032 KEKKECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEAK 1091 + + T + K E V+ + E E T + E + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 1092 ES 1093 + Sbjct: 1218 KP 1219 Score = 35.8 bits (82), Expect = 0.002 Identities = 37/245 (15%), Positives = 79/245 (32%), Gaps = 36/245 (14%) Query: 90 KKARKLVDNKRPFTQQKNLDEETQEPNEEDDQENNRYQEETQMDLIDDETSKKTQQHSPQ 149 +K + VD T + P+ +++E R E S+ T+ + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPS--NNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 150 DLSNEEATEANHFEDSSKESQESSEHHLDNPTETKTNFDEYESEETQTQMDSGGNETSES 209 + E N Q+++E N K ++ ++ G+ET E+ Sbjct: 1044 SKQESKTVEKNE--------QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 210 SNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQEPNEEDDQENNRYQEETQMDLIDDET 269 T + + T E E+ E + QE ++ + Sbjct: 1096 Q----------------------TTETK-ETATVEKEEKAKVETEKTQEVPKVT--SQVS 1130 Query: 270 SKKTQQHSPQDLSNEEATEANHFEDSSKESQESSEHHLDNPTE-TKTNFDEYESEEITND 328 K+ Q + Q + +SQ ++ + P + T +N ++ +E T + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVN 1190 Query: 329 SNDQE 333 + + Sbjct: 1191 TGNSV 1195 Score = 33.9 bits (77), Expect = 0.009 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 6/178 (3%) Query: 1246 VSKARNEKERKACEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEAR 1305 SK + E+ A E T + +++ +EAK ++KA A++ E + + T E Sbjct: 1047 ESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 1306 KLLEQEVKKSVKAYLDCVSR-ARNEKEKQECEKLLTPEARKFLAKQALSCLEKAGNEEER 1364 + ++E K V + KQE + + P+A +++ ++ Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNT 1164 Query: 1365 KACLKNLPKDLQENVLAKESLKAYKDCLSQ-ARNEEERRACEKLLTPEARKLLEQEVK 1421 A + K+ NV + + + N E P + K Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT--QPTVNSESSNKPK 1220 Score = 32.0 bits (72), Expect = 0.038 Identities = 26/177 (14%), Positives = 66/177 (37%), Gaps = 4/177 (2%) Query: 628 KARNEKEKKECEKLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD--LQSDILAK 685 + NE+ + E + P A + +N+K + + + + + Q+ +AK Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAK 1070 Query: 686 ESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEVEKKE 745 E+ K + E ++ T E K+ E +E K + + + Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 746 CEKLLTPEAKKKLEEAKKSVKAYL--DCVSQAKTEAEKKECEKLLTPEAKKLLEQQA 800 ++ + + + E A+++ + SQ T A+ ++ K + ++ + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 859 bits (2219), Expect = 0.0 Identities = 511/522 (97%), Positives = 514/522 (98%), Gaps = 1/522 (0%) Query: 1 MEQAFLKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAF KKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSE IKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EEAVKQRAKDKINIKTNKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EEAV+QRAKDKI+IKT+K QKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 119 bits (300), Expect = 3e-35 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 27 KLNKANRTFKRAFYL---SMALNIAAVASIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL A R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.8 bits (66), Expect = 0.014 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTFHQRHDDKEITKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K K D KE+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNDNPNSDSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N + S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.008 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 274 bits (702), Expect = 1e-95 Identities = 112/245 (45%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KTISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDEVSLSVLIPAFMISE 180 + IS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 27.2 bits (60), Expect = 0.014 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 11 VVLCGAMANTAIADPRIEARGELGKLIGGGVGGFVGDKIGGAIGVPGGPVGIGLGRFVG 69 +++ G + D ++ G G GG D++ + GG GI G +G Sbjct: 198 ILIEGLIFEVQQGDA-LDFSFAAGSQRGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLG 255
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.024 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 473 ALKNHSENKSALEEIKEFKFPSLKPKPTTETTAEMKEKETKEVAEKETKEKEVQENDTKE 532 ++ +++E + ++E P TTET AE ++E+K V + E E +E Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATE-TTAQNRE 1067 Query: 533 VQETQPKETPTALQEFMTNHSDLIEEIKSEFEIKSVE 569 V + Q S + E K Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104
>cloacin#Cloacin signature. Length = 551 Score = 27.8 bits (61), Expect = 0.023 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 11/133 (8%) Query: 27 SDEDLAKMAGVVAP--QDIVDYTKELKMRMKKMPEDK--RKAFHKQLHEYATKNTDKMTV 82 ++ED+A+ A Q EL K + + K F++ H+ + Sbjct: 333 ANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQM 392 Query: 83 ADFEARQ-----KAIKEALKKGNMEDMDDDFGLRSCKHGKMHKHDKHGKKHDK--KHGKN 135 A +A++ + A E D D L S + K DK + Sbjct: 393 AGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNK 452 Query: 136 HDKDHDDKDHDHH 148 K D HD+H Sbjct: 453 PRKGFKDYGHDYH 465
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 42.3 bits (99), Expect = 7e-06 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 645 GNVFSQTGNSGQALIGAANTGR--RGSISGSKLESSNVDLSRSLTNLIVVQRGFQANSKA 702 ++ S GN L ++ T +S + S V+L NL Q+ + AN++ Sbjct: 472 ASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQV 531 Query: 703 VTTSDQILNTLLNLK 717 + T++ I + L+N++ Sbjct: 532 LQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 196 bits (500), Expect = 4e-57 Identities = 114/461 (24%), Positives = 191/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFD-------------LFVVMGASDKQLDFPVVYAAAR 167 I +NKID+ + V ++ + L+ M ++ Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 168 DGYAM-KSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 + + K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FSAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 39.8 bits (93), Expect = 3e-05 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGV 462 T G V Sbjct: 596 FTNGRSV 602
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.2 bits (63), Expect = 0.017 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 32 FVIVAWLFRF--KSIAFSILITLLVILVDIWVYSDVRQFLL-DTASSPILLLAALLIKW 87 V VA ++A +L +LV L I D+ + LL D + P LL LL Sbjct: 121 SVAVAMTLAPGWGTLAALLLTWVLVALTFI----DLDKMLLPDQLTLP-LLWGGLLFNL 174
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 190 bits (483), Expect = 8e-63 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSTSGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKQEAQYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + + S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 72.8 bits (178), Expect = 2e-15 Identities = 59/313 (18%), Positives = 108/313 (34%), Gaps = 28/313 (8%) Query: 177 EEKEEVKETPQEEKPKDDEIQEGETLKD-EEISKELETQEELEIPKEETQEQAKEQEPIK 235 E++ + +T P + + + EEI++ E P ++ E K Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 236 EETQETKEEKQEKTQDSPSVQELETMQELVKEIQENSNGQEDKKETQENTETPQELEKQE 295 +E++ ++ +Q+ T+ Q +E K + NT+T E+ + Sbjct: 1046 QESKTVEKNEQDATE---------------TTAQNREVAKEAKSNVKANTQT-NEVAQSG 1089 Query: 296 LEKQEKTQESAETPQDVETPQEKEKQELEKQEKTQESAETPQDVETPQEKEKQELETPQE 355 E +E + VE +EK K E EK TQE + V QE+ + + Sbjct: 1090 SETKETQTTETKETATVEK-EEKAKVETEK---TQEVPKVTSQVSPKQEQSETVQPQAEP 1145 Query: 356 TPQETPQELEKQELEKQEKTQESAETPQDVETPQEKEKQELETPQETPQEKETQELETQE 415 + P K E Q +T +A+T Q P ++ +E P T + Sbjct: 1146 ARENDPTVNIK---EPQSQTNTTADTEQ----PAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 416 STETPQETPQKLETQEDHYESIEDIPEPVMAQAMGEELPFLNESVAKTSNNENDTETPKE 475 T T Q E + V + E + + T + T T Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258 Query: 476 SVIKTPQEKEESI 488 +V+ + K + + Sbjct: 1259 AVLSDARAKAQFV 1271 Score = 67.4 bits (164), Expect = 9e-14 Identities = 48/234 (20%), Positives = 78/234 (33%), Gaps = 33/234 (14%) Query: 169 EEKEEVKEEEKEEVKETP-QEEKPKDDEIQEGETLKDEEISKELETQE----ELEIPKEE 223 E E V E K+E K E+ + Q E K+ + + + TQ + +E Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 224 TQEQAKEQEPIKEETQETKEEKQEKTQDSPSVQELETMQELVKEIQENSNGQEDKKETQE 283 TQ ++ E+ ++ K E EKTQ+ P V Q K+ Q Sbjct: 1095 TQTTETKETATVEKEEKAKVET-EKTQEVPKVT-----------------SQVSPKQEQS 1136 Query: 284 NTETPQELEKQELEKQEKTQESAETPQDVETPQEKEKQELEKQEKTQESAETPQDVETPQ 343 T PQ E ++ + + PQ + + ++T + E P T Sbjct: 1137 ETVQPQ----AEPARENDPTVNIKEPQ---SQTNTTADTEQPAKETSSNVEQPVTESTTV 1189 Query: 344 EKEKQELETPQETPQETPQELEKQELEKQEKTQESAE---TPQDVETPQEKEKQ 394 +E P+ T T Q E + K + P +VE Sbjct: 1190 NTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSND 1243 Score = 65.1 bits (158), Expect = 4e-13 Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 22/259 (8%) Query: 244 EKQEKTQDSPSVQELETMQELVKEIQENSNGQEDKKETQENTETPQELEKQELEKQEKTQ 303 EK+ +T D+ ++ +Q V + N+ E+ E P E E Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNN---EEIARVDEAPVPP-PAPATPSETTETVA 1041 Query: 304 ESAETPQDVETPQEKEKQELEKQEKTQESAETPQDVETPQEKE----KQELETPQETPQE 359 E+++ E++ E Q + Q E E + Q T + Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 360 TPQELEKQELEKQEKTQESAETPQDVETPQEKEKQELETPQETPQEKETQELETQESTET 419 +EK+E K E + + ++E+ E PQ P + + +E Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 420 PQETPQKLETQEDHYESIEDIPEPVMAQAMGEELPFLNESVAKTSNNENDTETPKESVIK 479 T +T++ E+ ++ +PV SV + N T Sbjct: 1162 TNTTA---DTEQPAKETSSNVEQPVTESTTVNTGN----SVVENPENTTPATT------- 1207 Query: 480 TPQEKEESIETPKESDKTS 498 P ES PK + S Sbjct: 1208 QPTVNSESSNKPKNRHRRS 1226 Score = 60.1 bits (145), Expect = 2e-11 Identities = 48/260 (18%), Positives = 88/260 (33%), Gaps = 29/260 (11%) Query: 293 KQELEKQEKTQESAETPQDVETPQEKEKQELEKQEKTQESAETPQDVETPQEK-EKQELE 351 + E Q + TP +++ E+ + E+ P TP E E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 352 TPQETPQETPQELEKQELEKQEKTQESAETPQDVETPQ----------EKEKQELETPQE 401 + QE+ E + E Q + Q KE Q ET + Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 402 TPQEKE-TQELETQESTETPQETPQKLETQEDHYESIEDIPEPVMAQAMGEELPFLN-ES 459 EKE ++ET+++ E P+ T Q QE A+ E P +N + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSET------VQPQAEPARENDPTVNIKE 1157 Query: 460 VAKTSNNENDTETPKESVIKTPQEKEES----------IETPKESDKTSSPLELRLNLQD 509 +N DTE P + ++ +E P+ + ++ + + Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 510 LLKSLNQESLKSLLENKTLS 529 K+ ++ S++S+ N + Sbjct: 1218 KPKNRHRRSVRSVPHNVEPA 1237 Score = 51.2 bits (122), Expect = 9e-09 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 29/237 (12%) Query: 150 LVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKETPQEEKPKDDEIQEGETLKDEEI-S 208 V E E + T+ E+ + EV + + + + E E + Sbjct: 1039 TVAENSKQESK---TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 209 KELETQEELEIPKEETQEQAKEQEPIKEETQETKEEKQEKTQDSPSVQELETMQELVKEI 268 + ET+E + KEE + ET++T+E + +Q SP ++ ET+Q + Sbjct: 1096 QTTETKETATVEKEEKAK---------VETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 269 QENSNGQEDKKETQENTETPQELEKQELEKQEKTQESAETPQDVETPQEKEKQELEKQEK 328 +EN + N + PQ + Q + ET +VE P + Sbjct: 1147 REN--------DPTVNIKEPQSQTNTT---ADTEQPAKETSSNVEQPVTESTTV----NT 1191 Query: 329 TQESAETPQDVETPQEKEKQELETPQETPQETPQELEKQELEKQEKTQESAETPQDV 385 E P+ TP + P+ + + E S+ V Sbjct: 1192 GNSVVENPE-NTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247 Score = 44.7 bits (105), Expect = 9e-07 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 13/222 (5%) Query: 112 KKLGSNMSELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEK 171 +K + +E + + N +E E ++EEK Sbjct: 1052 EKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEK 1111 Query: 172 EEVKEEEKEEVKETPQEEKPKDDEIQEGETLKDEEISKELETQEELEIPKEETQEQAKEQ 231 +V+ E+ +EV + + PK + Q E ++E + ++ P+ +T A + Sbjct: 1112 AKVETEKTQEVPKVTSQVSPK--QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 232 EPIKEETQETKEEKQEKTQDSPSVQELETMQELVKEIQENSNGQEDKKETQENTETPQEL 291 +P KE + + V E T+ ++ N + N+E+ Sbjct: 1170 QPAKETSSNVE----------QPVTESTTVNTGNSVVENPENTTPATTQPTVNSES-SNK 1218 Query: 292 EKQELEKQEKTQESAETPQDVETPQEKEKQELEKQEKTQESA 333 K + ++ P + + + Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAV 1260
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.4 bits (73), Expect = 0.014 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Query: 1027 IKELENSIKTTQENIAKYIRLVEQKPPY-PRLEYLQALKWD-----HKTLIDDLAKMSKD 1080 ++ + + + + + I + P ++++A +WD K L+ L K Sbjct: 505 VETTYGTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKT--P 562 Query: 1081 REYKPVFNPKSQEVLEKM 1098 +YKP Q V + + Sbjct: 563 DDYKPRRLRYLQLVGKYI 580
>adhesinb#Adhesin B signature. Length = 310 Score = 27.5 bits (61), Expect = 0.039 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 147 PTLKERKALIDFIKENNPSDKITLLESSLSERIVYKRSVSEGLGV 191 T + K L++ +++ +ESS+ +R + ++VS+ + Sbjct: 232 GTPDQIKTLVEKLRKTKV--PSLFVESSVDDRPM--KTVSKDTNI 272
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 33.5 bits (76), Expect = 0.002 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 15/230 (6%) Query: 133 ELERKEAELESKTLQEHEENQIKRAEEISITENENELAKQELEKYA-LEAENKSL----K 187 E RKEAE K QE E+ + + E + TE + +LA+ E ++ A L E K++ K Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKAVEIAQK 196 Query: 188 QYNESQNPDTLYEQQVAQEQSKEEERSNKQDLELETLRDNNIKKGLDDESLGLLESLQIL 247 + + +Q+ + ++ S+ + +D E++TL + L S E +++ Sbjct: 197 KLSAAQSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLA--GKRNELAQASAKYKELDELV 254 Query: 248 RNETNEVANYLRANEIDYSRPTGENTTSKIASLALEENNQLNEKETDTQEQAKHTEKEQE 307 + + RAN+ +RP E T ++ + + E Q ++T+ + + Q Sbjct: 255 KKLS------PRANDPLQNRPFFEATRRRVGAGKIREEKQKQVTASETRINRINADITQI 308 Query: 308 KPKI--APNNDIDLKDKYANLHSFFKQTELDIKQKRIKTKLDFKESFLNY 355 + I NN + K+ + ++ +IK +D SF Sbjct: 309 QKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKDAVDATVSFYQT 358
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.2 bits (70), Expect = 0.003 Identities = 41/191 (21%), Positives = 66/191 (34%), Gaps = 7/191 (3%) Query: 5 KEQNKANENAQQETK----NSQAQETTSSQAYESVSQA--NTQATTQANESIKPQTNNTA 58 + EN++QE+K N Q T++Q E +A N +A TQ NE + + Sbjct: 1035 ETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094 Query: 59 TQQENAKESQAIE-QNRATQEPHAKEEPKKVSHPDEPWLDYDPKTHAGLKERQENQEKTP 117 TQ KE+ +E + +A E +E KV+ P + + +EN Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154 Query: 118 SKGNDEPWIEFAKLEQARAKAHYQACLEKERAKQQAQQNAKNTNSINTPNKEVEIIDYGY 177 K A EQ + + N+ N NT + Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSE 1214 Query: 178 TQSAPAKNRRR 188 + + P RR Sbjct: 1215 SSNKPKNRHRR 1225
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 146 bits (369), Expect = 3e-45 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAVESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCIQ-----KTR----ECYKENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 31.8 bits (72), Expect = 0.003 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 70 EPEVQILKALKPDFIVVVAYGKILPKEVLEIAP 102 EP +++L +KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.009 Identities = 47/283 (16%), Positives = 100/283 (35%), Gaps = 47/283 (16%) Query: 310 SGKSTLLQLIVSKLYDKILVKD----LKHETIQKCIEIQPDTDIVDSVEYLAQNEVEEFA 365 SG+S ++ I + + +I+VK+ K + + K + + D + + L Q +E+ Sbjct: 93 SGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTR 152 Query: 366 TNVSKFT--EAIFNRID-SKSSGNLKELENQIIENIKKFDEQITYWQ-EKTKLEEQLKNR 421 + + + E +++ EQ + WQ +K + E L + Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKK 212 Query: 422 EKERKKSQNIIDTFTDEDYLDKREKLQENRKALIDLKQSKEGVLTFIKELKRVVNFESKE 481 ER I Y + + L + + L Sbjct: 213 RAERLTVLARI-----NRYENLSRVEKSRLDDFSSLL--HKQAIAKHAVL---------- 255 Query: 482 NMEEKNSYDKVYNQLKQNICKELEEIDKNIKNGCFDSDDKNIEKLEVKQQTLRQEIVEFL 541 E++N Y + N+L+ +LE+I+ I E+ ++ Q + EI++ L Sbjct: 256 --EQENKYVEAVNELRVYK-SQLEQIESEI--------LSAKEEYQLVTQLFKNEILDKL 304 Query: 542 KEKGVIDENIGDLERANYQLVGIEREITDLKREIEEITNKIKG 584 ++ +NIG L +E + +++ I + Sbjct: 305 RQ---TTDNIGLLT--------LELAKNEERQQASVIRAPVSV 336
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 1e-06 Identities = 28/195 (14%), Positives = 70/195 (35%), Gaps = 19/195 (9%) Query: 27 QIELENQSRF-LAQQKEFEKEVKEKRAQYQSHFKMLEQKEEALKEQEREQKAKFDDAVKQ 85 +++L ++ F ++E + + Q+ + QKE L ++ E+ + Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRY 226 Query: 86 ASTLALQDERAKIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKREN 145 + ++ R + + LE + + E EL ++++E+++ E Sbjct: 227 ENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ-ENKYVEAV---NELRVYKSQLEQIESEI 282 Query: 146 NEAESRLKAENEKKLNEKLETEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAE 205 A+ + + NE L+ R+ +L + + +A Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQ---------TTDNIGLLTLELAKNEERQQASVIRAP 333 Query: 206 LSSQQFQGEVQELAI 220 +S +VQ+L + Sbjct: 334 VS-----VKVQQLKV 343
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 26.6 bits (58), Expect = 0.014 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Query: 32 MEGIENSDPNQNNPFITA--AMGIGGAAISIFFPDTKPIVDGVKPL 75 ME I NPFI+A A+GIG + K + + PL Sbjct: 225 MEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPL 270
>PF05844#YopD protein Length = 295 Score = 25.4 bits (55), Expect = 0.027 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSE 74 KQK E Sbjct: 256 KQKVE 260
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 48.8 bits (116), Expect = 4e-10 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 1 MTSALLGLQIVLAVLIVVVVLLQ--KSSSIGLGAYSGSNESLFGAKGPASFMAKLTMFLG 58 M ALL + +++A+ +V +++LQ K + +G +G++ +LFG+ G +FM ++T L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 59 LLFVANTIALGYFYNKEYGKSILD 82 LF ++ LG N + Sbjct: 61 TLFFIISLVLGNI-NSNKTNKGSE 83
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 430 bits (1106), Expect = e-148 Identities = 169/570 (29%), Positives = 282/570 (49%), Gaps = 59/570 (10%) Query: 10 RLILAIALSFLFIALYSYFFQKPNQT--TTPTTKQETTNNHTATNSNTPNAFSATQTIPQ 67 R +L IAL F+ ++ + Q N TT+ TT +A + P + + Sbjct: 5 RNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVK 64 Query: 68 ENLLSAISFEHARIEIDSLGR--IKQVYLKDKKYLTPKQKGFLEHVSHLFNPKANPQTPL 125 ++L + I++ G + + K L Q L S F +A Sbjct: 65 TDVL--------DLTINTRGGDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQSGLTG 116 Query: 126 KELPLLAADKLKPLEVRFLDPTLNNKAFNTPYSASKTTLGPNEQLV--LTQDLGALTIIK 183 ++ P A+ +PL +N A G NE V D T K Sbjct: 117 RDGPDNPANGPRPL-------------YNVEKDAYVLAEGQNELQVPMTYTDAAGNTFTK 163 Query: 184 TLTFYDDLHYDLQIAFKSPN--------NIIPSYVITNGYRPVADLDS-----YTFSGVL 230 T Y + + + N + + P D S +TF G Sbjct: 164 TFVLKRG-DYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAA 222 Query: 231 LENNDKKIEKIE---DKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEIGT 287 D+K EK + D + + S +++ + +YF T + G + +G Sbjct: 223 YSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNFYTANLG- 280 Query: 288 KNPLGFISLKSEA-----------NLHGYIGPKDYRSLKAISPMLTDVIEYGLITFFAKG 336 N + I KS+ N ++GP+ + A++P L ++YG + F ++ Sbjct: 281 -NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQP 339 Query: 337 VFVLLDYLYQFVGNWGWAIILLTIIVRLILYPLSYKGMVSMQKLKEIAPKMKELQEKYKD 396 +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ + PK++ ++E+ D Sbjct: 340 LFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGD 399 Query: 397 EPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWILWIHDLS 456 + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + LWIHDLS Sbjct: 400 DKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLS 459 Query: 457 IMDPYFILPLLMGASMYWHQSVTPSSVTDPMQAKIFKFLPLLFTIFLITFPAGLVLYWTT 516 DPY+ILP+LMG +M++ Q ++P++VTDPMQ KI F+P++FT+F + FP+GLVLY+ Sbjct: 460 AQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIV 519 Query: 517 NNILSVLQQLIINKILENKKRAHAQNKKES 546 +N+++++QQ +I + LE K+ H++ KK+S Sbjct: 520 SNLVTIIQQQLIYRGLE-KRGLHSREKKKS 548
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.5 bits (63), Expect = 0.039 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 54 ASVKESVKEVKEVQEESVKETNTKEIHQSAEEKKQNLKIETPQEEIITPKPPKKNLKEES 113 V +S E KE Q KET T E EEK + +T + +T + K + E+ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVE----KEEKAKVETEKTQEVPKVTSQVSPKQEQSET 1138
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 33.3 bits (76), Expect = 0.002 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 25/134 (18%) Query: 216 LSIVGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESADTIERLGIEKSLKSLENCDIVLGVFDLSKPLEQEDFNLIDTLN 318 + KV +IDT G E + +SL L D + + ++ + L L Sbjct: 66 ENTKVNIIDTPG--HMDFLAE---VYRSLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 223 bits (571), Expect = 3e-78 Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLEMIQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS++ERLE I A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEIH 151 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHVA 149
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 28.5 bits (63), Expect = 0.041 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Query: 158 LLQKAQNIKVFRLKD----KTLESYAEAKEAFFEDKYWILHDTTIYEMPLKFE------L 207 LL++ +K+ R D TL SY+ K E+ W+L ++ + P + + + Sbjct: 246 LLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEESSWLLLMLSLLQQPHEVDSLLADII 305 Query: 208 GANALNTTH 216 G NAL +H Sbjct: 306 GLNALLLSH 314
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 29.4 bits (66), Expect = 0.018 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 246 ILSKRSIDPNSKVFSAPNRLVNAFYDP---KDLPLEKGFNFIE 285 I+++ +D N F P + V FYD K L EKG+ E Sbjct: 113 IITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKE 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 5e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 125 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 175 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 112 bits (281), Expect = 8e-29 Identities = 76/401 (18%), Positives = 154/401 (38%), Gaps = 29/401 (7%) Query: 54 KKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRILEITGAKDLAYKSENFILRLEM 113 K P + + N N I + L + ++ ++ +N + L + Sbjct: 170 KLNPFDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTL----SSEICFRLKNNSIDLSL 225 Query: 114 IPKKANLMILDKEKCVIEA--FRFNDRVAKNDILGALPPN-TYEHQERDLDFKGLLDILE 170 K + + I++ F FN N +G N + + + + +LE Sbjct: 226 SNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLE 285 Query: 171 KDFLSYQHKE-LEHKKNHIIKRLNMQKERLKEKLEKLEDPKNLQLEAKELQTQASLLLTY 229 + + + L+ K + + K + R +K + L + + + LL Sbjct: 286 NFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTAN 345 Query: 230 QHLINKHESCVVLKDFED---KECMIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEE 286 + + K S + L ++ I +D++ + + + K K+ + + Sbjct: 346 IYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 287 NLKEKIAFKENQINYVKGA---------KEESVLEMFM---PVKNSKTKRPMSGYEVLYY 334 +E++ + + + + A K+E + ++ + SK + + Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISK 465 Query: 335 KDFKIGLGKNQKENVKL-LQDARANDLWMHVRDIPGSHLIVFCQKNTPKDEVIMELAKML 393 I +GKN +N L L+ A +D+W H ++IPGSH+IV + P + ++E A + Sbjct: 466 DGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIP-ESTLLEAANLA 524 Query: 394 IKMQKDVFNS-YEIDYTQRKFVKIIKGAN---VIYSKYRTI 430 K +S +DYT+ K VK GA VIYS +TI Sbjct: 525 AYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQTI 565 Score = 34.8 bits (80), Expect = 6e-04 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 5/92 (5%) Query: 46 NTPYIGLSKKPPESVLKNTLALDFCLNKFTKNAKILQANIIDNDRI--LEITGAKDLAYK 103 N P I L+ + +K + L K+ NAKI+ + I+ DRI ++ +L + Sbjct: 55 NYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVVIDFESTDELGFN 113 Query: 104 SENFILRLEMIPKKANLMILDK-EKCVIEAFR 134 S + L +E++ + +N+ ++ K + ++++ + Sbjct: 114 SI-YSLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 149 bits (377), Expect = 3e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLTEALKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLQAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.013 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 362 bits (931), Expect = e-127 Identities = 120/345 (34%), Positives = 192/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIQISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AITSGNSS-----------NLLSAHIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 A+ S SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVAIALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPVVVTSQDITLKITKEP--------LSDSKNTQDLDNSMSLDTAHN 294 ++GTIV G D+ + V V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.028 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 261 IVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 320 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 321 LDI 323 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.009 Identities = 9/24 (37%), Positives = 13/24 (54%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR 53 + I GESG+GK +A + R Sbjct: 163 LMITGESGTGKELVARALHDYGKR 186
>FLAGELLIN#Flagellin signature. Length = 507 Score = 245 bits (626), Expect = 3e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFRVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.002 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 20/95 (21%) Query: 60 ILENDDEINLKKIAYMEFSKLAECVRPSGFYNQKAKRLINLSENILKDFQSFENFKQEAT 119 L + + +A+ E + VR + +KA E+ Sbjct: 458 ALRSAPALA-GCVAFDELREQPVAVRAFPW--RKAPGP-------------LEDADVLRL 501 Query: 120 REWLLDQKGIGKESADAILCYVCAKEVMVVDKYSY 154 +++ G G+ SA + D Sbjct: 502 ADYVETTYGTGEASAQTTEQAINV----AADMNRV 532
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.0 bits (122), Expect = 1e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 STGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIALLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 901 bits (2329), Expect = 0.0 Identities = 284/1038 (27%), Positives = 515/1038 (49%), Gaps = 40/1038 (3%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKKTIKPMLQKIDGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY +K L +++GVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILVNAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKHIQAISP-NYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESRYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHELGQFELMSALRKELKS 631 + + E FT + G QN FV LKP +ER E ++ + EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKGLENINLSEVSLIGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKI 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 EGYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDNKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPK 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + + Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 812 AGISLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAAL 871 G S G+ + + +N L G Y +TG + + + + +A +FV++++ LAAL Sbjct: 832 PGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAAL 890 Query: 872 YESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANE 931 YES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A + Sbjct: 891 YESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKD 950 Query: 932 -ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGL 990 K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + GG+ Sbjct: 951 LMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGM 1010 Query: 991 MISMVLSLLIVPVFYRLL 1008 + + +L++ VPVF+ ++ Sbjct: 1011 VSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 271 bits (693), Expect = 2e-75 Identities = 105/407 (25%), Positives = 187/407 (45%), Gaps = 15/407 (3%) Query: 2790 SAGLNAIES-AGNNSLMWLNALFVAKGGNPLFAPYYLQDNSTEHIVTLMKDITSALGMLS 2848 S ++ + + +G L L + + +A + S I + T+ L ++ Sbjct: 894 SNDIDTLYANSGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIA 952 Query: 2849 KSNLKNNSTDVLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSSLKNQRFADAIPNAMDV 2908 K + L L+ RL LS + F++RL +LK+QRFA + +A +V Sbjct: 953 SLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEV 1011 Query: 2909 ILKYSQRDKLKNNLWATGVGGVSFVENGTGTLYGINVGYDRFIKG---VIVGGYAAYGYS 2965 + +++ + + N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS Sbjct: 1012 LYQFAPKYEKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYS 1071 Query: 2966 GFYER--ITSSKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQIGSNDALLSMINQSY 3023 F + +S ++N + G+Y+R F + E F G++++ + ALL +NQSY Sbjct: 1072 SFSNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSY 1131 Query: 3024 QYSTWTTNARVNYGYDFMFKNKSVIVKPQISLRYYYIGMTGLDGVMNNALYNQFKANADP 3083 Y ++ R +YGYDF F ++++KP + + Y ++G T + Sbjct: 1132 NYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGA 1187 Query: 3084 SKKSVLMIDFAFENRHYFNKNSYFYAIGGIGRDLLVRSMGDKLVRFIGDNILSYRKGELY 3143 S + + E R+Y+ SYFY G+ ++ + V + + R Sbjct: 1188 SSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--L 1244 Query: 3144 NTFANITTGGEIRLFKSFYMNAGVGARFGLDYKMINITGNIGMRLAF 3190 NT A + GGE++L K ++N G L + + N+GMR +F Sbjct: 1245 NTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 38.1 bits (88), Expect = 8e-04 Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 18/222 (8%) Query: 254 NGTTTISGVTFNNNGALTYKGGNGIGGSITFTNSNINHYKLNLNANSVTFNNSTLGSMPN 313 T ++ N N T + G G S+T ++++ K +N ++ S L Sbjct: 388 GKNTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLT 446 Query: 314 GNANTVGNAYILNASNITFNNLTFNGGWFVFDRSNANVHFQGTTTINNPTSPFVNMSAKV 373 GN G + NN G + S+AN F+ T N T+ F N + Sbjct: 447 GNITVDGPLRV--------NNQV---GGYALAGSSANFEFKAGTDTKNGTATFNNDISLG 495 Query: 374 TINPNAVFNIQNYTPSIGSAYTLFSMKNGSIAYNDVGNLWNIIRLKNTQATKDNSKNATS 433 V I + F+ + ++ V N NI +L A+ + + + Sbjct: 496 RFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNINKL--ITASTNVAVKNFN 549 Query: 434 NNNTHTYYVTYNLGGTLYNFRQIFSPNSIVLQSVYYGANNIY 475 N ++G + I S + I + G +IY Sbjct: 550 INELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 31.2 bits (70), Expect = 6e-04 Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 16 KRKKLLTELAELEAEIKVSSERKSSFNISLSPS 48 R KL ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.019 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 21/220 (9%) Query: 179 TPSDIQKKETK---NDKKKENFKENPI-DENHKTPNEESFLAIPTPYNTTLNALEPQEGL 234 TP++IQ N+++ E P+ TP+E + T + + Sbjct: 999 TPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT--------ETVAENSKQESKT 1050 Query: 235 VQISSHSPTHYTIYPKRNRFNDLSN-PTNPTLKEI---KQETKEREPTPKKETLTPTTPT 290 V+ + T T + SN N E+ ETKE + T KET T Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 291 PATLKPVMPASAPNTDNDNNTENHPIKEESPQEEIIKE---TIKEEENEAQNAPSFSPIT 347 A ++ P + + + + PQ E +E T+ +E ++Q + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170 Query: 348 PTSAKKPVMVKELSENKEILDGLDYGEVQKPKDYELPATQ 387 P + + ++E+ + G V+ P++ TQ Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSV--VENPENTTPATTQ 1208
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 57/315 (18%), Positives = 105/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGVLALLSLFLRNIM 210 G GS + +G + I I+ W YL + + + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSGITSKTTIKEKTQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFILLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I+ + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AIAGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.008 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 139 bits (352), Expect = 4e-37 Identities = 99/437 (22%), Positives = 174/437 (39%), Gaps = 85/437 (19%) Query: 9 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMTSQVMDTMDIEKERGITIKAQSV 65 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 66 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 125 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 126 DNHLEILPVINKIDLPNANVVEVKQDIEDTIGIDCSSANEVSAKARLGIKD--------- 176 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 177 -------LLEKIITTIPAPSGDFNAPLKALIYD-------------------------SW 204 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 205 F--------------------DNYLGALALVRIMDGGINTEQEILVMGTGKKHGVLGLYY 244 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 245 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 301 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 302 FAGLYPIETDKFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 361 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 362 EREFGLNLIATAPTVVY 378 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 405 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 464 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 465 LKSCTKGYASFDYEP 479 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 347 bits (893), Expect = e-121 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDATGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDISKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 30.9 bits (70), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDATGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 553 bits (1426), Expect = 0.0 Identities = 178/582 (30%), Positives = 293/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKILKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKIKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + ++P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GAPKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIVLEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 48.7 bits (116), Expect = 2e-08 Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 18/290 (6%) Query: 35 ALLSDIAKSFEMESASVGLMITLYAWLVSLGSLPLMLFSAKIERKRLLLFLFALFILSHI 94 LL D+ S +A G+++ LYA + + L S + R+ +LL A + + Sbjct: 30 GLLRDLVHS-NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88 Query: 95 LSALAWNFWVLLISRTGIALAHSVFWSITASLVIRVAPIGRKQQALGLLALGSSLAMILG 154 + A A WVL I R + + ++ + + + + + G ++ M+ G Sbjct: 89 IMATAPFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAG 147 Query: 155 LPLGRIIGQMLDWRSTFGVIGGVATLIALLMYKLLPP----------LPSKNAGTLSSLP 204 LG ++G + F + L L LLP + N Sbjct: 148 PVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWA 206 Query: 205 VLVKRPLLMGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAG-VVGS 263 + + ++ ++ I F + + L FG+ + + Sbjct: 207 RGMTVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIGISLAAFGILHSLAQA 264 Query: 264 FLFGRLYAK-NSRKFIAFAMVLVICPQLLLFVFKNSEWVVFLQIFLWGIG 312 + G + A+ R+ + M+ +L F W+ F + L G Sbjct: 265 MITGPVAARLGERRALMLGMIADGT-GYILLAFATRGWMAFPIMVLLASG 313
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 28.1 bits (62), Expect = 0.046 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 25/148 (16%) Query: 17 QELIKSLENSSFPIKKFVPLASARSAGK----------KIKAFHKDYEILETTH-EVFEK 65 E I++ F I RS K+ A ++ Y+ + +H + + Sbjct: 93 SEFIQASVEYGFGITIGEQNTIERSVSTTAGPNEYVYYKVYATYRKYQAIRISHGNISDD 152 Query: 66 ERIDIAFFSAGGSVSEEFATSAAKTALVIDNTSFFRLDKKVPLIVPEINAKEIFNAPLNI 125 I + G +S+ A S ID S ++ L VP + ++ Sbjct: 153 GSI---YKLTGIWLSKTSADSLGN----IDQGSLIETGERCVLTVPSTDIEKEILDL--- 202 Query: 126 IANPNCSTIQMTQIL--NPLHLHFKIKS 151 + +T L NP + +S Sbjct: 203 --AAATERLNLTDALNSNPAGNLYDWRS 228
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.3 bits (70), Expect = 0.010 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 180 EALRIMDKLEKIGLNGVEEELKKECDLDLNTIKKLLEMVQIKQNDL--SHAEFFEKIA 235 + M+KLEK G + E LKKE ++ + I L +K + L HA+ F+KIA Sbjct: 263 DMFEYMNKLEKGGFEKISESLKKE-GVEKDRIDVLKGEKALKASGLVPEHADAFKKIA 319
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 639 bits (1649), Expect = 0.0 Identities = 178/671 (26%), Positives = 304/671 (45%), Gaps = 66/671 (9%) Query: 9 RIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAAT 68 +I NIG+ AH+DAGKTT +E +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGV 128 + W++ ++N+IDTPGH+DF EV RS+ VLDGA+ + + GVQ Q+ ++ K G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNN 188 P I F+NK+D+ G + V IK +L A V Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------------------------- 154 Query: 189 ETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELSVEEIKKGIKTG 248 K VE P+ + + + + V E ++ L+EKY+ G+ L E+++ Sbjct: 155 -----KQKVELYPNMCVTNFTESEQ--WDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 249 CLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGE 308 N SL P+ GS+ N G+ L++ + + + T E Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSE 248 Query: 309 FAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKE 368 G FKI +L ++R+Y G L V S K+K ++ + + + I + Sbjct: 249 LCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDK 307 Query: 369 VYAGEICAFVG----LKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMG 424 Y+GEI L L GDT + ER+E P P++ VEP +E + Sbjct: 308 AYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLL 362 Query: 425 VALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484 AL ++++ DP R T + ++ +G++ +E+ L+ ++ VE EI +P V + E Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Query: 485 TIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKG 544 R E+ + + + + + P GSG ++ + +S G + + + AV +G Sbjct: 423 --RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 545 IQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRTANPVLLEPM 604 I+ + G L G+ V D K+ G Y+ S+ F++ + ++ + A LLEP Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539 Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664 + ++ P+EY+ D + I + I++ +P + Y +DL T G Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599 Query: 665 RGTYSMEFDHY 675 R E Y Sbjct: 600 RSVCLTELKGY 610
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 47.1 bits (112), Expect = 3e-08 Identities = 51/346 (14%), Positives = 106/346 (30%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCAYPKFAPNPLKESDLLNGFLEPTNEGYALAKLSVMKYCEYVSTEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKEFVMWGDGTARREYLNAKDLARFIS 222 +YG + + P + T + K ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIASIPS-----------------VMNVGSGVDYSIEEYYKKVAQVLDYKGAFVKD 265 + I + V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 86.0 bits (213), Expect = 6e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPAEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.004 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Query: 191 KEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQ--RKWYCLGICSKKSKLSLMPEE 248 KE+ +EE+ I D A+ + Q + ALK + R + K+SK +MP E Sbjct: 365 KEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSE 418 Query: 249 IFNDKQFTYFKF 260 IF+D FTYF F Sbjct: 419 IFDDGTFTYFGF 430
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 1e-40 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ KT N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYVQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKVTRYSIT 238 KNP G++V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>LIPOLPP20#LPP20 lipoprotein precursor signature. Length = 175 Score = 294 bits (753), Expect = e-105 Identities = 173/175 (98%), Positives = 174/175 (99%) Query: 1 MKNQVKKILGMSVIATMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 MKNQVKKILGMSV+A MVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60 Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120 Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 75.5 bits (185), Expect = 2e-21 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 34 EQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIK-DLHQAAIAIGKAETSMKLMLE 92 Q F+ L +++ +++TQ + G+ L+ + KA SM++ ++ Sbjct: 27 PQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQ 86 Query: 93 VRNKAISTYKELLRTQI 109 VRNK ++ Y+E++ Q+ Sbjct: 87 VRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.8 bits (64), Expect = 0.011 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.9 bits (80), Expect = 3e-04 Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EIDASKKLAKMQETLDFIKERL-KDVKKKKGVELFHKAN--KISGHQALDSDILEKGGID 217 + A LA+ ++ + +K R K + + + G +L +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADVSVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G VS++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 29.4 bits (66), Expect = 0.030 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 4 LRYKLLLFVFIGFWGLLVLNLFI 26 KL+LFV + W LL L + Sbjct: 195 TPIKLVLFVALDGWTLLSKGLIL 217