>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 0.001 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 163 KNLSALAQDNALDPVIGREEEILRVIEILGR--RKKNNPLLIGEAGVGKTSIAEAL 216 L +QD P++GR + + +L R + ++ GE+G GK +A AL Sbjct: 127 SKLEDDSQDGM--PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL 180
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.002 Identities = 17/69 (24%), Positives = 29/69 (42%) Query: 2 LENDKQVLNNEKIELSNDITKLTAEKDDLLKTKENLTKEKENLNTDLSNAKNEASQTSQK 61 LE + N S I L AEK L K +L + + LN + + + + + + Sbjct: 265 LEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREA 324 Query: 62 LKDLQQKHA 70 K L+ +H Sbjct: 325 KKQLEAEHQ 333
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 41.2 bits (96), Expect = 3e-06 Identities = 43/228 (18%), Positives = 66/228 (28%) Query: 4 LSSTKEKLEARIDLLESEIIDLSTGIKNLVAETSKLKDANNQLRQKNDKLFTTKERLTKE 63 L E ++I L L A + L+ A + + L E Sbjct: 125 LEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAE 184 Query: 64 NAELENRNAELSKEKENLVVKIRGLENANDQLWQAKENFTKENTELASKNTVLTEKTAEL 123 A LE R AEL K E + L K +L + Sbjct: 185 KAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTAD 244 Query: 124 KNENDRLNHQVIALNNEQGSLKQERAQLQDACGFLEETCANLEKDNQQLTDKLKKLESVQ 183 + L + AL Q L++ + LE + L + LE Sbjct: 245 SAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQS 304 Query: 184 KNLENTNNQLRQAREKIAEEKTELEREMARLKGLEGMEAKSNLDLHNK 231 + L LR+ + E K +LE E +L+ + S L Sbjct: 305 QVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRD 352 Score = 39.3 bits (91), Expect = 1e-05 Identities = 38/212 (17%), Positives = 70/212 (33%) Query: 4 LSSTKEKLEARIDLLESEIIDLSTGIKNLVAETSKLKDANNQLRQKNDKLFTTKERLTKE 63 + + ++I LE+ DL ++ + ++ L + L K L K Sbjct: 104 NDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKA 163 Query: 64 NAELENRNAELSKEKENLVVKIRGLENANDQLWQAKENFTKENTELASKNTVLTEKTAEL 123 N + S + + L + LE +L +A E +T ++K L + A L Sbjct: 164 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 223 Query: 124 KNENDRLNHQVIALNNEQGSLKQERAQLQDACGFLEETCANLEKDNQQLTDKLKKLESVQ 183 L + N + + L+ LE A LEK + + + Sbjct: 224 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 283 Query: 184 KNLENTNNQLRQAREKIAEEKTELEREMARLK 215 K LE L + + + L L+ Sbjct: 284 KTLEAEKAALEAEKADLEHQSQVLNANRQSLR 315 Score = 31.2 bits (70), Expect = 0.004 Identities = 29/210 (13%), Positives = 55/210 (26%) Query: 48 QKNDKLFTTKERLTKENAELENRNAELSKEKENLVVKIRGLENANDQLWQAKENFTKENT 107 N+ T +++ R + E L +K L N L + T+E + Sbjct: 36 NTNEVSAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELS 95 Query: 108 ELASKNTVLTEKTAELKNENDRLNHQVIALNNEQGSLKQERAQLQDACGFLEETCANLEK 167 K + +E ++ L + L LE A L Sbjct: 96 NAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAA 155 Query: 168 DNQQLTDKLKKLESVQKNLENTNNQLRQAREKIAEEKTELEREMARLKGLEGMEAKSNLD 227 L L+ + L + + + ELE+ + ++ Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKT 215 Query: 228 LHNKRLANENRDLKTQNRKLEEENAKLKKE 257 L ++ A R + N Sbjct: 216 LEAEKAALAARKADLEKALEGAMNFSTADS 245
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.0 bits (80), Expect = 2e-04 Identities = 28/172 (16%), Positives = 55/172 (31%) Query: 46 LKNENAELLRQNGDLAVKIKNLENTNNQLRQARENWIEEKRELTTEKERLVRKNTELENR 105 N + + L + L L +A E + + + + L + LE R Sbjct: 132 AMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191 Query: 106 NAELYAELLKEKESLTKANTELAEKIKALNAQNNELVASLADQSELDLHNKRLASENRDL 165 AEL L T + ++ A + +++ + L Sbjct: 192 QAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTL 251 Query: 166 KTQNRKLEEENIKLKKEVKDVKERHSQLQQQNDELERLNANAERTQHDLKQQ 217 + + LE +L+K ++ + + LE A E + DL+ Q Sbjct: 252 EAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQ 303
>CHANNELTSX#Nucleoside-specific channel-forming protein Tsx signature. Length = 294 Score = 26.5 bits (58), Expect = 0.011 Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 32 LSNHFHNLGSWQDAKRDNFSEVIDNLRST 60 ++ +FHN G W D + NF + ++RST Sbjct: 254 VARYFHNGGQWADDAKLNFGDGPFSVRST 282
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1044 bits (2701), Expect = 0.0 Identities = 354/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTELIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DTEL EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>FLAGELLIN#Flagellin signature. Length = 507 Score = 37.3 bits (86), Expect = 1e-04 Identities = 32/260 (12%), Positives = 80/260 (30%), Gaps = 5/260 (1%) Query: 80 TTASTDNATATTDKAYTNSTDTTVANAAKQVETENTAVQNAETDLQNAETDLQNAVTKVE 139 S+ D + V + V T+ TA + NA + Q E Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNA-ANGQLTTDDAE 242 Query: 140 NDAKAKDFDETTFQADQKAEQSAQTALQNAEDQFTNDQNALNTALQDQKTPTPSTPSPTK 199 N+ F T A ++ A++ ++ T D + + + + T Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTT 302 Query: 200 KDETSGGSGDKDQHTASSGTPSSSGNAVASQLTKDTATVDGFSKVSVNSMNTTLSGVTQM 259 + G ++G + + S T+ V+G + N + Sbjct: 303 IN---GEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLE 359 Query: 260 SQQTETISNLLSSSADLGSVISNSQGLSDAFSALKSAQNTLKGYLDSSSATIGQLTNGSN 319 + + ++ + + + ++ A + + + + Sbjct: 360 ANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKK-STA 418 Query: 320 AVVSTLDKAINEVDMALANL 339 ++++D A+++VD ++L Sbjct: 419 NPLASIDSALSKVDAVRSSL 438
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 5e-04 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 7/168 (4%) Query: 3 KKANEEKAL-KKAKTEAKQEAKTEAKENKGNSKAKETKIKEAKVKESKEAKIKEGKAKEI 61 + A E A ++ EAK K + N+ ETK + + KE KAK Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115 Query: 62 KAKETDPTKKLS------FNEALEELFADSLSDCVSYESIIQISAKVPTLAQIKKIKELC 115 K + K S + A+ + +I + ++ T A ++ + Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175 Query: 116 QKYQKRLVSSSEYAKKLNAIDKIKNTEEKQKVLDEELEDGYDFLKEKD 163 ++ V+ S N++ + + + K + Sbjct: 1176 SSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.5 bits (141), Expect = 3e-12 Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLVVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSSYVYE 62 ++GK + G A + I +A++ +QGA + A Y E LEK V + E + + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYNSIKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + I++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNDGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + ++ A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHNIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L ++NIR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSHLSNGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 30.2 bits (68), Expect = 0.014 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%) Query: 23 VLIPLLILSGSLTPHQSFQLGIAVLMGYVFGSFLIQFLSPLMSLESIAKISFGLIALSFL 82 V +P + + P + + A ++ + G+ + LS + ++ + + + Sbjct: 35 VSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSV 94 Query: 83 ICYFDSIPFFWLWIWRFIAGVASSALMILVAPLSLPYVKENKRALVGGLIFSAVGIGSVF 142 I + F L + RFI G ++A LV + Y+ + R GLI S V +G Sbjct: 95 IGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGV 154 Query: 143 SGFVLPWISSYNIKWAWIFLGGSCLIAFILSLV 175 + I+ Y I W+++ L I + L+ Sbjct: 155 GPAIGGMIAHY-IHWSYLLLIPMITIITVPFLM 186
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 61.2 bits (148), Expect = 6e-12 Identities = 52/280 (18%), Positives = 97/280 (34%), Gaps = 18/280 (6%) Query: 153 EEPNAEEQLLPTLDAQKENEEIKEEEKQEVAE--TPQEKEVSQELENPQVQEAETQEVAE 210 PN + +P+ NEEI ++ V E ++ + QE++T E E Sbjct: 998 TTPNNIQADVPS--VPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE 1055 Query: 211 QTET-------QELETPKDETQENAETPQEKEVSKELETLQTQEAETQEIQEEKQEQEQV 263 Q T + + K + N +T + + E + QT E + E++++ + Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVE 1115 Query: 264 KEKTQDSPSAQELEAMQELVKEIQENSNEDKKETQEIAEIPQTQEEEIIETPQEIQTQEI 323 EKTQ+ P + ++ E + E +E I + Q + E +E Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKET 1175 Query: 324 TETPQTQETETETQEVTEQKETQEITETPQEAETKTQDQETPPKTQETQENYETIEDIPE 383 + + TE+ T + E P+ T ++ +N Sbjct: 1176 SSNVEQPVTESTTVNTGNS-----VVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230 Query: 384 PVMAKAMGEALP-LVNEALIE-TSNNENAAQTPKESVTQT 421 P + + AL + TS N NA + + Q Sbjct: 1231 PHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQF 1270 Score = 60.1 bits (145), Expect = 1e-11 Identities = 42/273 (15%), Positives = 88/273 (32%), Gaps = 23/273 (8%) Query: 168 QKENEEIKEEEKQEVAETPQEKEVSQELENPQVQEAETQEVAEQTETQELETPKDETQEN 227 ++ + + Q S N ++ + V TP + T+ Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA----TPSETTETV 1040 Query: 228 AETPQEKEVSKELETLQTQEAETQEIQEEKQEQEQVKEKTQDSPSAQELEAMQELVKEIQ 287 AE +++ + E E Q + K+ + VK TQ + E+ Sbjct: 1041 AENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN--------------EVA 1086 Query: 288 ENSNEDKKETQEIAEIPQTQEEEIIETPQEIQTQEITETPQTQETETETQEVTEQKETQE 347 ++ +E K+ + T E+ E +++T++ E P+ + QE +E + Q Sbjct: 1087 QSGSETKETQTTETKETATVEK---EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 348 ITETPQEAETKTQDQETPPKTQETQEN--YETIEDIPEPVMAKAMGEALPLVNEALIETS 405 + ++ ++ T E ET ++ +PV V E T+ Sbjct: 1144 EPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTT 1203 Query: 406 NNENAAQTPKESVTQTPQENAKIPQKSDATSSP 438 ES + + + + P Sbjct: 1204 PATTQPTVNSESSNKPKNRHRRSVRSVPHNVEP 1236 Score = 53.5 bits (128), Expect = 1e-09 Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 18/257 (7%) Query: 225 QENAETPQEKEVSKELETLQTQEAETQEIQEEKQEQEQ--VKEKTQDSPSAQELEAMQEL 282 E + +Q EE ++ V +PS + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 283 VKEIQENSNEDKKETQEIAEIPQTQEEEIIETPQEIQTQEITETPQTQETETETQEVTEQ 342 +E + ++ T+ A+ + +E QT E+ + +ET+ + TE Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQ----SGSETKETQTTET 1100 Query: 343 KETQEITETPQEAETKTQDQETPPKTQET---QENYETI----EDIPEPVMAKAMGEALP 395 KET + + + + QE P T + QE ET+ E E + E Sbjct: 1101 KETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQS 1160 Query: 396 LVNEALIETSNNENAAQTPKESVTQTPQENA-----KIPQKSDATSSPLELRLNLQDLLK 450 N + + ++ VT++ N + P+ + ++ + + K Sbjct: 1161 QTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPK 1220 Query: 451 SLNQESLKSLLENKTLS 467 + ++ S++S+ N + Sbjct: 1221 NRHRRSVRSVPHNVEPA 1237 Score = 42.7 bits (100), Expect = 3e-06 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 10/186 (5%) Query: 122 ESSQNLEPVKETLEANWDALEDLGDLESLAKEEPNAEEQLLPTLDAQKENEEIK----EE 177 E+ N++ +T E E + KE E++ ++ +K E K Sbjct: 1071 EAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVS 1130 Query: 178 EKQEVAETPQEKEVSQELENPQVQEAETQEVAEQTETQELETPKDETQENAETPQEKEVS 237 KQE +ET Q + +P V E Q ++ T + E P ET N E P + + Sbjct: 1131 PKQEQSETVQPQAEPARENDPTVNIKEPQ--SQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 238 KELETLQTQEAETQEIQEEKQEQEQVKEKTQDSPSAQELEAMQELVKEIQENSNEDKKET 297 E E Q V ++ + P + +++ V E + + Sbjct: 1189 VN---TGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS-VPHNVEPATTSSNDR 1244 Query: 298 QEIAEI 303 +A Sbjct: 1245 STVALC 1250
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 194 bits (493), Expect = 2e-64 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 KKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.013 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 33 LLGESGAGKSTILRILAGLEAVSSGYIEV 61 L G G GKST++ L GL+ S + ++ Sbjct: 601 LEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 198 bits (505), Expect = 9e-58 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLERERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LER+RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVAIAG--FNAMDV-GDSVVDPNNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV + V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.7 bits (72), Expect = 0.005 Identities = 39/273 (14%), Positives = 92/273 (33%), Gaps = 49/273 (17%) Query: 33 NTYGIFAAGY-LARPLGGIVMAHFGDRFGRKNMFMLSILLMVIPTFMLALMPTFDHFVSF 91 YGI A Y L + V+ DRFGR+ + ++S+ + ++A P Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVL--- 99 Query: 92 GVNSMGLAPENAHYLGYIAPIFLVFVRVCQGVAVGGELPGAWVFVQEHAPQGQKNTFVGF 151 Y+G R+ G+ G A ++ + ++ GF Sbjct: 100 -------------YIG----------RIVAGIT-GATGAVAGAYIADITDGDERARHFGF 135 Query: 152 LTASVVSGILLGSLVYIGIYMVFDKAVVEDWAWRVAFGLGGIFGIISVYLRRFLEETPVF 211 ++A G++ G + +G M ++ F ++ FL Sbjct: 136 MSACFGFGMVAGPV--LGGLM-------GGFSPHAPFFAAAALNGLNFLTGCFLLPESHK 186 Query: 212 QQMKQDNILVKFPLKEVFKDSLFGILVSMLITWVLTACI-----LIFILFIPNFTLMHPN 266 + + PL ++ +++ + + + ++++F + Sbjct: 187 GERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGED------R 240 Query: 267 FNFTPFEKTY-FQILGLVSIVSSIILTGFLADK 298 F++ G++ ++ ++TG +A + Sbjct: 241 FHWDATTIGISLAAFGILHSLAQAMITGPVAAR 273
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 275 bits (705), Expect = 5e-96 Identities = 115/244 (47%), Positives = 164/244 (67%), Gaps = 3/244 (1%) Query: 2 RFLKIIFLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLIL 61 R L + ++ LI PL A + LP + S P + + + +T L P+++L Sbjct: 3 RLLSVAPVLLWLITPL--AFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 62 VMTSFIRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDK 121 +MTSF R+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ ++ Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 122 KISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTPDDVSLSVLIPAFMISEL 181 KIS EA EK A P +EFML+ TRE DL LF R+ N + P+ V + +L+PA++ SEL Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSEL 179 Query: 182 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 241 KTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL +L Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 242 VASF 245 SF Sbjct: 240 AQSF 243
>SECA#SecA protein signature. Length = 901 Score = 26.4 bits (58), Expect = 0.050 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIAKKNLSQMSEEDFKKMREEVRK--ELEEKTKGLSEEEIKAK 111 ++ K ++ ++MR+ V +E + + LS+EE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.9 bits (98), Expect = 7e-06 Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 669 SISGSKLESSNVDLSRSLTNLIVVQRGFQANSKAVTTSDQILNTLLNLK 717 +S + S V+L NL Q+ + AN++ + T++ I + L+N++ Sbjct: 498 QLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 39.2 bits (91), Expect = 5e-05 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 4 SLWSGVNGMQAHQIALDIESNNIANVNTTGFKYSR 38 + + ++G+ A Q AL+ SNNI++ N G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 40.0 bits (93), Expect = 3e-05 Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 7/119 (5%) Query: 146 TNDPMYANTPFSNNPNSPNDNAINGKDGANGSNGYGINGNDGINGSSGSNGANGSNGNTS 205 N + P + AI GAN + + G N ++ + ++ + + Sbjct: 232 NETGADYNGHYGGAPMIDDIAAIQRLYGANMTTR-TGDSVYGFNSNTDRDFYTATDSSKA 290 Query: 206 NNNAI--GSGIDTDGVLGVDG---VNGSSSSSGGSVGGYENNFTNHGSTNNN-TGGYDN 258 ++ G DT G +N + S G N HG T N GG N Sbjct: 291 LIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGN 349 Score = 29.6 bits (66), Expect = 0.046 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 27/123 (21%) Query: 150 MYANTPFSNNPNSPNDNAINGKDGANGSNGYGINGNDGINGSSGSNGANGSNGN------ 203 FS+ + +I N G +GND + G+S N G GN Sbjct: 316 NLNEGSFSDVGGLKGNVSIAHGVTIE--NAIGGSGNDILVGNSADNILQGGAGNDVLYGG 373 Query: 204 -----------------TSNNNAIGSGIDT--DGVLGVDGVNGSSSSSGGSVGGYENNFT 244 S ++ + D D G+D ++ S+ + G + ++ FT Sbjct: 374 AGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFT 433 Query: 245 NHG 247 G Sbjct: 434 GKG 436
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 32.5 bits (74), Expect = 0.030 Identities = 55/290 (18%), Positives = 107/290 (36%), Gaps = 33/290 (11%) Query: 1183 FALQNNRFDSFIPSDQLKIVNAI-ASHF-GFKQEKLQRWYEKIDTANFGYSEQDYKII-- 1238 F + ++F + L++ + I + F G + ++ + S + K I Sbjct: 174 FDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVE 233 Query: 1239 --KDFMDRVGENNINLNEQTLNEYFIN-HPENILGHLSLEKTRY---SFEINGEQIYKYE 1292 KD + N N T N F+ + N++ +K +Y S + K + Sbjct: 234 VCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDK 293 Query: 1293 LQALENKSLDLSQALSQAIEKLPKDVYQYHKTTLKTDALIIDANNERYQEVQKLIK---- 1348 L++KS DL + + I + K + T K + + + ++ +L+ Sbjct: 294 SDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLKKCE------DKDIFKLYGELLTANIY 347 Query: 1349 NLARG-ELVKWDNLYYQLEQNNEMGIFLRPTKINSKAQDLRIKAYFKIKDALNDL----- 1402 L +G ++ N YY E + + I L K S+ K Y K+K + Sbjct: 348 ALKKGLSHIELAN-YYS-ENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLL 405 Query: 1403 -TSAELNPLSS---DLELESKRAKLNLVYDEFVKKFGYLNENRNRKDIKQ 1448 ELN L S ++ ++ + E ++ GY+ + K K Sbjct: 406 QNEEELNYLYSVLTNINNADNYDEIEEIKKELIET-GYIKFKKIYKSKKS 454
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 98.4 bits (245), Expect = 2e-26 Identities = 40/209 (19%), Positives = 77/209 (36%), Gaps = 16/209 (7%) Query: 87 EADVLFQAERKIGDWIFSSAVFFFALAFIEAIIIICLLPLKEKVPYLVTFSNATQNFAIV 146 E D L AER + A ALA + + L PLK PY++T T +I Sbjct: 21 ERDKLAAAERS-KKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIA 79 Query: 147 QR--ADKSIRANQALVRQLVASYVNNRE--NISNIKEQNEIAHETIRLQSAFEVWDFFEK 202 + D +I ++A+ + +A+YV RE + +E + + + SA D + + Sbjct: 80 AKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEY----FDAVMVMSARPEQDRWSR 135 Query: 203 LVSYEH-----SIYTNINLTRKISIINIALISKTQANIEISAQLFHKEKLESLKRYRIIM 257 ++ +I N + I ++ + A + + + + + Sbjct: 136 FYKTDNPQSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFT-KESVTGSNSTKTDAVATI 193 Query: 258 TFEFEPIEIDTKSVPLNPTGFIVTGYDVT 286 ++ + NP G+ V Y Sbjct: 194 KYKVDGTPSKEVDRFKNPLGYQVESYRAD 222
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 41.7 bits (98), Expect = 4e-06 Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 13/181 (7%) Query: 211 AASIATLSNDEKELGVACVDMGGETCNLTIYSGNSIRYNKYLPIGSHHLTTDL------S 264 AA+I + G VD+GG T + + S N + Y+ + IG + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 YMLNTPFPCAEEVKIKYGDLSFESEGETPSQNVQIPTTGSDGNENHIVPLSEIQSIMRER 324 Y AE +K + G S E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHKSIQESGLE---EHLGGGVVLTGGMALMKGIKELARIHFTNYPVRLA-TPM 380 + ++++ E + G+VLTGG AL++ + L T PV +A P+ Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVAEDPL 322 Query: 381 E 381 Sbjct: 323 T 323
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.007 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 19/151 (12%) Query: 20 QRVNSRARKEENKEIQNLSENDERIKLAKQAKQDNLAIGNLESRLKSLKSMDKDAKELMS 79 +R RAR E N+ ++++ N ER A Q SR L + +K + ++ Sbjct: 320 ERNYERARAELNQANEDVARNQERQAKAVQV---------YNSRKSELDAANKTLADAIA 370 Query: 80 ISKAYAHNNEKDQNDFKHFKNRLDKAIDSFNQNLGNDAASLKLPSNIDIDDPKALEKFSK 139 K + ++ N A+ + D AL S Sbjct: 371 EIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAAL---SS 427 Query: 140 SLESEKENIQNSLHQWKKQLAETNHLNKEYN 170 ++ES K+ + K+ + N+LN E N Sbjct: 428 AMESRKK-------KEDKKRSAENNLNDEKN 451
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 116 bits (292), Expect = 4e-32 Identities = 65/341 (19%), Positives = 129/341 (37%), Gaps = 48/341 (14%) Query: 1 MALLFTGACGYIGSHTARAFLENTTENIVIVDDLSTGF---LEHVKTLEHYYPNRVMFIQ 57 M L TGA G+IG H ++ LE +V +D+L+ + L+ LE F + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDYYDVSLKQ-ARLELLAQPGFQFHK 58 Query: 58 ANLNETHKLDAFLDKQQLKDPIEAILHFGAKISVEESTRLPLEYYTNNTLNTLELVKLCL 117 +L + + E + +++V S P Y +N L +++ C Sbjct: 59 IDLADREGMTDLFASGH----FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR 114 Query: 118 KHHIKRFIFSSTAVVYGESDS-SLNEESPLN-PINPYGASKMMSERILLDASKVADFNCV 175 + I+ +++S++ VYG + + + ++ P++ Y A+K +E + S + Sbjct: 115 HNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPAT 174 Query: 176 ILRYFNVAGACMHNDYATPYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTDYPTRDGT 235 LR+F V G D A + + L GK ++ G Sbjct: 175 GLRFFTVYGPWGRPDMA-LFKFTKAMLE-------------GKSID--VYN------YGK 212 Query: 236 CIRDYIHVDDLANAHLASYHTLLEQNKS---------------EIYNVGYNQGHSVKEVI 280 RD+ ++DD+A A + + + +YN+G + + + I Sbjct: 213 MKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYI 272 Query: 281 NKVKEISNNNFLVEILDKRQGDPASLIANNAKILQNTPFKP 321 +++ +L + GD A+ + + F P Sbjct: 273 QALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTP 313
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 80.9 bits (199), Expect = 2e-20 Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 19/232 (8%) Query: 4 ILVSGATSGFGLEIAKAFLQKNHVVFGTGRRQKNL------QELQLAYPKRFIPLCFDLK 57 ++GA G G +A+ + + + L + + + + F P D++ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF-PA--DVR 67 Query: 58 NKLETKQAVETLFSITDRIDALINNAGLALGLNKTYECEFNDWEVMIDTNIKGLLYLTRL 117 + + + ID L+N AG+ L + +WE N G+ +R Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 118 ILPSMIEHNRGTIINLGSIAGTYAYPGGNVYGASKAFVKQFSLNLRADLAGTNIRVSNVE 177 + M++ G+I+ +GS Y +SKA F+ L +LA NIR + V Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 178 PG---------LCGETEFSMVRFKGDKLKAQSVYENTTYLKPQDIANIVLWI 220 PG L + + KG ++ KP DIA+ VL++ Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.6 bits (63), Expect = 0.018 Identities = 13/33 (39%), Positives = 21/33 (63%) Query: 80 IENIFANEKEDTTYIITSYLSKEELFEKKPELK 112 + N+ A+EK D ++++ L E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 29.3 bits (66), Expect = 0.027 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 7/54 (12%) Query: 316 LFITSDFMLSRLNGVVENLVIYP-------KNMLKNLALSGGLVFSQRVLLELP 362 LF+T + L ++ +V+ P N L +G L+F ++L LP Sbjct: 136 LFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLALP 189
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 30.9 bits (69), Expect = 0.012 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 259 YNVKWRKPVMGSYRGYKIISMSPPSSGGTHLIQILNV 295 + +K R+P MG R +ISM PP G H +I N+ Sbjct: 72 FELKMRRP-MGETRNVSLISMPPPWRPGEHADRITNL 107
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 565 bits (1457), Expect = 0.0 Identities = 128/610 (20%), Positives = 229/610 (37%), Gaps = 75/610 (12%) Query: 6 SSLNTSYTGLQAHQSMMDVTGNNISNASDEFYSRQRVIAKPQAAYMYGTKNVNMGVDVEA 65 S +N + +GL A Q+ ++ NNIS+ + Y+RQ I + + V GV V Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 61 Query: 66 IERVHDEFVFSRYTKANYENTYYDTEFSHLKEASAYFPDIDEASLFTDLQDYFNSWKELS 125 ++R +D F+ ++ A +++ + + + +SL T +QD+F S + L Sbjct: 62 VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML-STSTSSLATQMQDFFTSLQTLV 120 Query: 126 KNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINK 185 NA+D A +QAL K+E L + K T + L + + + + + ++N+ QIA +N Sbjct: 121 SNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLND 180 Query: 186 RIKEVENNKSLKHANELRDKRDELEFHLRELLGGNVFKSSIKTHSLTDKDSADFDESYNL 245 +I + + N L D+RD+L L +++G V S +YN+ Sbjct: 181 QISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEV--------------SVQDGGTYNI 226 Query: 246 NIGHGFNIIDGSIFHPLVVKESENKGGLNQVYFQSDDFKVTNITDK-LNQGKVGALLNVY 304 + +G++++ GS L S V + I +K LN G +G +L Sbjct: 227 TMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFR 286 Query: 305 NDGSNGTLKGKLQDYIDLLDSFARGLIESTNAIYAQSASHNIEGEPVEFNSDEAFKDTNY 364 + L + L A E+ N + +A D N Sbjct: 287 SQ--------DLDQTRNTLGQLALAFAEAFNTQH------------------KAGFDANG 320 Query: 365 NIKNGSFDL----IAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDN-----KDNNT 415 + F + + NT K +T + + I+ + + N T Sbjct: 321 DAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTT 380 Query: 416 ENDFDDYFTASFNNETKKFVIQPKNASQGLFVSMKDNGTNFMGALKLNPFFQGDDASNIS 475 D + + + + + M L D + I+ Sbjct: 381 FTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLI-------TDEAKIA 433 Query: 476 LNKEYKKEPTTIRPWLAPINGNFDVANMMQQLQYDSVDFYNDKFDIKPMKISEFYQFLTG 535 + E E G+ D N L S N K ++ Y L Sbjct: 434 MASE---EDA----------GDSDNRNGQALLDLQS----NSKTVGGAKSFNDAYASLVS 476 Query: 536 KINTDAEKSGRILDTKKSMLETIKKEQLSISQVSVDEEMVNLIKFQSGYAANAKVITAID 595 I T+ +++ + +Q SIS V++DEE NL +FQ Y ANA+V+ + Sbjct: 477 DIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTAN 536 Query: 596 RMIDTLLGIK 605 + D L+ I+ Sbjct: 537 AIFDALINIR 546
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.3 bits (78), Expect = 9e-04 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 10/160 (6%) Query: 51 SQVESNTQAQEGLKSVYEGQSNKIKHLNDAILSQEESLRALKASQEVHANTIKQQSEILE 110 + + + Q + SV +N+ D + + E A KQ+S+ +E Sbjct: 995 TNITTPNNIQADVPSV--PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVE 1052 Query: 111 DLRNEIRANQQAIQQLDKQNKEMSELLTKLSQDLVAQIAL-----IQKTLKEQEKQEKAE 165 +NE A + Q + + S + + VAQ KE EK E Sbjct: 1053 --KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 166 KQYKQSAPTNEK-SKQSLAADALEQDKENQPKHQQLPKEE 204 K ++ T E S + EQ + QP+ + + + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 143 bits (362), Expect = 4e-44 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 27/172 (15%) Query: 22 NMDKETVAGDVSAKTVQTAPV-TTEPAPEKEEPKEEPVPVVEEKPAKPAIESGTIIASIY 80 D ++ VS + Q PAP P P V+ K T+ + + Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK-------HFTLKSDVL 222 Query: 81 FDFDKYEIKDSDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVK 137 F+F+K +K Q LD++ + V++ G TD GS YNQ L +R SV Sbjct: 223 FNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVV 282 Query: 138 NALVIKGVEKDMIKTISFGEAKPKCTQ-----KTR----ECYKENRRVDVKL 180 + L+ KG+ D I GE+ P K R +C +RRV++++ Sbjct: 283 DYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 33.8 bits (77), Expect = 6e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 72 EPEVQILKSLKPDFIVVVAYGKILPKEVLKIAP 104 EP +++L +KP F+V A P+ + +IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 413 bits (1062), Expect = e-141 Identities = 123/336 (36%), Positives = 202/336 (60%), Gaps = 18/336 (5%) Query: 226 YTFSGVLLENNDKKIEKIE---DKDAKEIKRFSNILFLSSVDRYFTTLLFTDNPQGFEVL 282 +TF G D+K EK + D + + S +++ + +YF T N G Sbjct: 216 HTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHN-DGTNNF 274 Query: 283 INPETGTKNPLGFISLKNEA-----------TLHGYIGPKDYRSLKAISPMLTDAIEYGL 331 G N + I K++ ++GP+ + A++P L ++YG Sbjct: 275 YTANLG--NGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGW 332 Query: 332 ITFFAKGVFVLLDYLYQFVGNWGWAIILLTIIVRIILYPLSYKGMVSMQKLKELAPKMKE 391 + F ++ +F LL +++ FVGNWG++II++T IVR I+YPL+ SM K++ L PK++ Sbjct: 333 LWFISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA 392 Query: 392 LQEEYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIPVFFAIYRVLYNAVELKSSEWI 451 ++E + Q++ MM LYK NPLGGC PL++Q+P+F A+Y +L +VEL+ + + Sbjct: 393 MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAPFA 452 Query: 452 LWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIFKLLPLLFTLFLITFPAG 511 LWIHDLS DPY+ILP+LMG +M++ Q ++P T+TDPMQ KI +P++FT+F + FP+G Sbjct: 453 LWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLWFPSG 512 Query: 512 LVLYWTTNNILSVLQQLIINKVLENKKRAHVQNKKE 547 LVLY+ +N+++++QQ +I + LE K+ H + KK+ Sbjct: 513 LVLYYIVSNLVTIIQQQLIYRGLE-KRGLHSREKKK 547
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 35.6 bits (82), Expect = 4e-04 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 25/134 (18%) Query: 216 LSIIGKPNAGKSSLLNAMLLEERA---LVSDIKGTTR-DTIEE-------------VIEL 258 + ++ +AGK++L ++L A L S KGTTR D + Sbjct: 6 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW 65 Query: 259 QGHKVRLIDTAGIRESMDEIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFTIIDALN 318 + KV +IDT G + + E+ R SL L D + + ++ + + AL Sbjct: 66 ENTKVNIIDTPGHMDFLAEVYR-----SLSVL---DGAILLISAKDGVQAQTRILFHALR 117 Query: 319 RAKKPCIVVLNKND 332 + P I +NK D Sbjct: 118 KMGIPTIFFINKID 131
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 224 bits (572), Expect = 2e-78 Identities = 63/147 (42%), Positives = 93/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFK 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECIAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPKEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 115 bits (290), Expect = 5e-30 Identities = 77/361 (21%), Positives = 143/361 (39%), Gaps = 31/361 (8%) Query: 97 AKDLAYKSETFILRLELIPKKANLMILDQEKCVIEA--FRFNDRVAKNDILGALPLN-TY 153 + ++ ++ + + L L K + + I++ F FN N +G LN Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLFKEIQSNKFEFNCYTKNNSFVGFYCLNLMS 268 Query: 154 EHQEKDLDFKDLLEILEKDFLFYQHKE----LEHKKNQIIKRLNAQKERLKEKLDNLENP 209 + K + + ++LE FY K+ L+ K + + K + R +K L N Sbjct: 269 KEDYKKIQYDSSSKLLEN---FYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNT 325 Query: 210 KNLQLEAKELQTQASLLLTYQHLINKHESCVILKDFED---KECAIEIDKSMPLNAFINK 266 + + LL + + K S + L ++ I +D++ + + Sbjct: 326 LKKCEDKDIFKLYGELLTANIYALKKGLSHIELANYYSENYDTVKITLDENKTPSQNVQS 385 Query: 267 KFTLSKKKKQKSQFLYLEEENLKEKIAFKENQIHYIKGATEESVLE------------MF 314 + K K+ + + +E++ + + + I A +E F Sbjct: 386 YYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIEEIKKELIETGYIKF 445 Query: 315 MPVKNSKIKRPMSGYEVLYYKDFKIGLGKNQKENIKL-LQDARANDLWMHVRDIPGSHLI 373 + SK + + I +GKN +N L L+ A +D+W H ++IPGSH+I Sbjct: 446 KKIYKSKKSKTSKPMHFISKDGIDIYVGKNNIQNDYLTLKFANKHDIWFHTKNIPGSHVI 505 Query: 374 VFCQKNAPKDEIIMELAKMLIKMQKDVFNS-YEIDYTQRKFVKIIKGAH---VIYSKYRT 429 V + P + ++E A + K +S +DYT+ K VK GA VIYS +T Sbjct: 506 VKNIMDIP-ESTLLEAANLAAYYSKSQNSSNVPVDYTEVKNVKKPNGAKPGMVIYSTNQT 564 Query: 430 I 430 I Sbjct: 565 I 565 Score = 34.5 bits (79), Expect = 8e-04 Identities = 19/104 (18%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 36 KERHAFVVDLN--TPYIGLSQKPLEGVLKNTLALDFCLNKFTKNAKILQANIIDNDRI-- 91 + ++ + P I L+ +K + L K+ NAKI+ + I+ DRI Sbjct: 43 RLSFKLLISSSSNYPRIHLTDLTKPNPIKAPMFCMV-LRKYISNAKIVDIHQINQDRIVV 101 Query: 92 LEITGAKDLAYKSETFILRLELIPKKANLMILD-QEKCVIEAFR 134 ++ +L + S L +E++ + +N+ ++ ++ ++++ + Sbjct: 102 IDFESTDELGFNSIY-SLIIEIMGRHSNMTLIRKRDNIIMDSIK 144
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 474 bits (1222), Expect = e-171 Identities = 180/347 (51%), Positives = 249/347 (71%), Gaps = 2/347 (0%) Query: 2 IFSKLIGLFSHDIAIDLGTANTIVLVKGQGIIINEPSIVAVRMGLFDSKAYDILAVGSEA 61 + K G+FS+D++IDLGTANT++ VKGQGI++NEPS+VA+R S + AVG +A Sbjct: 1 MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKS-VAAVGHDA 59 Query: 62 KEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKVHKRKTW-IRPRIMVCVPYGLT 120 K+MLG+TP +I AIRPMKDGVIAD+ +T KM+++FI++VH PR++VCVP G T Sbjct: 60 KQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGAT 119 Query: 121 SVERNAVKESALSAGAREVFLIEEPMAAAIGAGLPVKEPQGSLIVDIGGGTTEIGVISLG 180 VER A++ESA AGAREVFLIEEPMAAAIGAGLPV E GS++VDIGGGTTE+ VISL Sbjct: 120 QVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLN 179 Query: 181 GLVISKSIRVAGDKLDQSIVEYIRKKFNLLIGERTGEEIKIEIGCAIKLDPPLTMEVSGR 240 G+V S S+R+ GD+ D++I+ Y+R+ + LIGE T E IK EIG A D +EV GR Sbjct: 180 GVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGR 239 Query: 241 DQVSGLLHTIELSSDDVFEAIKDQVREISSALRSVLEEVKPDLARDIVQNGVVLTGGGAL 300 + G+ L+S+++ EA+++ + I SA+ LE+ P+LA DI + G+VLTGGGAL Sbjct: 240 NLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGAL 299 Query: 301 IKGLDKYLSDMVKLPVYVGDEPLLAVAKGTGEAIQDLDLLSRVGFSE 347 ++ LD+ L + +PV V ++PL VA+G G+A++ +D+ FSE Sbjct: 300 LRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDMHGGDLFSE 346
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 93.0 bits (231), Expect = 4e-24 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 13/213 (6%) Query: 142 FEEVRD-ASVIYHLEKKLGDYIFYVACFFFGTTALLIILLIILLPLKQKEPYLVQFSNNK 200 FEE ++ + VA ++ + L PLK EPY++ N Sbjct: 14 FEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNT 73 Query: 201 ENFALVQ--KADSTITANKALIRSLVGAYVLNRESITHIKQHEKMRQNTIKEQSSNEVWY 258 ++ D+TIT ++A+ + + YV RE + + + S+ Sbjct: 74 GEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWI--AAAREEYFDAVMVMSARPEQD 131 Query: 259 EFEKLIA-----HYDSIYTNPLLTRKVKIANI-YLDKDLAYIDIEVSLYHSGELESLKRY 312 + + +I N V+I + +L ++A + +G + Sbjct: 132 RWSRFYKTDNPQSPQNILAN-RTDVFVEIKRVSFLGGNVAQVYFTKESV-TGSNSTKTDA 189 Query: 313 KVVMSFEFKKQEINFDSMSLNPTGFIVTGYDVT 345 + ++ NP G+ V Y Sbjct: 190 VATIKYKVDGTPSKEVDRFKNPLGYQVESYRAD 222
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 0.046 Identities = 16/129 (12%), Positives = 39/129 (30%), Gaps = 3/129 (2%) Query: 2476 EEVKLRAEIKSEEAKYKAFNKEHYFNEENLKNNASKLDFLHKELKDLETLQSSVMIPTHT 2535 + L AE + EA+ K +++K+ L E L ++ + Sbjct: 177 KIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL---EKA 233 Query: 2536 EIKLYDLKNEESKDYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIK 2595 + +S + ++ ++ A + + L + E A Sbjct: 234 LEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAAL 293 Query: 2596 KQFASNLND 2604 + ++L Sbjct: 294 EAEKADLEH 302
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 3e-23 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 1 MQK-KIFLLEDDYLLSESVKEFLEHLGYEVACAFNGKEAYERLSVERFNLLLLDVQVPEM 59 M I + +DD + + + L GY+V N + ++ +L++ DV +P+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 60 NSLELFKRIKNDFLISTPVIFITALQDNTTLKNAFNLGASDYLKKPFDLDELEARIKR 117 N+ +L RIK PV+ ++A T A GA DYL KPFDL EL I R Sbjct: 61 NAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 1e-40 Identities = 39/202 (19%), Positives = 73/202 (36%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYKLLGLMSFIVFVLAIVLISLLPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ + + + +L PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSNAKVWQRFEDLIKTNN 157 D +I+ +EA+ + + YV RE + ++ V + S R+ KT+N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSITAKLLNENKLVYEKRYKIVMSYVFDAP 216 Q+ L + V I +A V T + + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKVTRYSIT 238 KNP G++V Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 29.4 bits (65), Expect = 0.020 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Query: 178 NTLENANKPLKETKAAEETKEK-EEEEVITIGDNTNAMKIVKKDIQRNYKALKSSQ-RKW 235 NT N+ + + KEK EE+ I D A+ + Q + ALK + + Sbjct: 346 NTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKAL-----ETQYVHNALKRNPVPRN 400 Query: 236 YCLWLCSKKSKLSLMPKEIFNDKQFTYFKF 265 Y + +K +MP EIF+D FTYF F Sbjct: 401 YNYYQAPEKRSKHIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.9 bits (218), Expect = 1e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLED 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 45.5 bits (108), Expect = 1e-07 Identities = 50/358 (13%), Positives = 106/358 (29%), Gaps = 78/358 (21%) Query: 5 ILITGAYGMVGQNTALYFKKN---------------------------KPNITLLTPKKS 37 L+TGA G +G + + + +P Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFH----- 57 Query: 38 ELYLLDKDSVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDL 97 ++ L D++ + + R + ++ + Y NL L + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 98 GIKKAINLASSCAYPKFAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVF 157 I+ + +SS Y P D ++ + YA K + S G+ Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLP 172 Query: 158 YKTLVPCNLYGE-------FDKFEEKIAHMIPGLISRMHTAKLKGEKNFVMWGDGTARRE 210 L +YG KF + + L+G+ ++ G +R+ Sbjct: 173 ATGLRFFTVYGPWGRPDMALFKFTKAM---------------LEGKS-IDVYNYGKMKRD 216 Query: 211 YLNAKDLARFIALAYENIAQIPS-----------------VMNVGSGVDYSIEEYYEMVA 253 + D+A I + I + V N+G+ + +Y + + Sbjct: 217 FTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALE 276 Query: 254 QVLDYKGVFVKDLSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKEAYEYYLKLLEV 310 L + +P + + D + + + E ++ G+K +Y +V Sbjct: 277 DALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>FLAGELLIN#Flagellin signature. Length = 507 Score = 285 bits (730), Expect = 1e-92 Identities = 130/519 (25%), Positives = 221/519 (42%), Gaps = 18/519 (3%) Query: 2 SFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANL 61 + INTN +L + ++ LSS++E+LSSGLRIN A DD++G AIA+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLE 121 QA RNAND I + QT + A++E L ++ +VQA + +++Q +IQ+ LE Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 ELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSG 181 E+D ++N T FNG ++LS + Q+GA T+ + +G + Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVN---- 175 Query: 182 AGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVR 241 + ++ +FK V G + Y + + +G + + V Sbjct: 176 -----GPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVN 230 Query: 242 ASYNVMATG----GTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGV 297 A+ + T T V + T E + K +G T V Sbjct: 231 AANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGD-TFDYKGVTFTIDT 289 Query: 298 EASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGNEHAVIGRLTLTRTDARD 357 + D G+++ +I+G +++ A + S D + Sbjct: 290 KTGNDGNGKVST-TINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 358 IIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAG 417 S ++ +G ++ TVN + + AG + + + Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 418 --VTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRD 475 + K + DSA +++D +RS +G++Q + I N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 476 VDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514 D+A E +N SK IL Q+G+ +AQAN V QNVL LL+ Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 30.6 bits (69), Expect = 0.023 Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 26/88 (29%) Query: 192 TLDAYFEPHLEAQLISYKGNKLK-----AQELIDEKKAQ--------------------- 225 TLD P Q K NKLK A E + + + + Sbjct: 372 TLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTNINNADNYDEIE 431 Query: 226 EIKNELEKESYIISSIVKKSKKSPTPPP 253 EIK EL + YI + KSKKS T P Sbjct: 432 EIKKELIETGYIKFKKIYKSKKSKTSKP 459
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.011 Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 9/235 (3%) Query: 136 TEQEQQKTEQERQKANKSGIELEQEQQKTSNIKTNNQIKVEQEKQKTSNTQKDLVKEQKD 195 T E +T E K +E + EQ T N ++ E + +NTQ + V + Sbjct: 1032 TPSETTETVAENSKQESKTVE-KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS 1090 Query: 196 LVKEQKDLVKEQKDLVKEQKDLVKEQKDLVKKAEQNCQENHNQFFIKKVGIKGGIAIEIE 255 KE + ++ V++++ E + + + Q + Q + V + A E + Sbjct: 1091 ETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND 1150 Query: 256 AECKTPKPTKTNQTP---IQPKHL--PNSKQPRSQRGSKAQELIAYLQKELESLPYSQKA 310 +P T QP N +QP ++ + + ++ + P + + Sbjct: 1151 PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES-TTVNTGNSVVENPENTTPATTQP 1209 Query: 311 IAKQVDFYKPSSIAYLELDPRDFNVTEEWQKENLKIRSKAQAKMLEMRNPQAHLS 365 KP + + NV E + RS L N A LS Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNV--EPATTSSNDRSTVALCDLTSTNTNAVLS 1262
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 294 bits (753), Expect = 8e-92 Identities = 104/454 (22%), Positives = 185/454 (40%), Gaps = 71/454 (15%) Query: 388 DLEHMNSFKEGEILVTDN-TDPDWEPCMKK-ASAVITNRGGRTCHAAIVAREIGVPAIVG 445 + + + E +++ ++ T D K+ T+ GGRT H+AI++R + +PA+VG Sbjct: 146 ETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVG 205 Query: 446 VSGATDSLYTGMEITVSCAEGE---------EGYVYAGIYEHEIERVELSNMQETQT--- 493 T+ + G + V EG E ++ E + + + Sbjct: 206 TKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTK 265 Query: 494 -----KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEK 548 ++ NIG P+ G+GL R E + +++ + P Sbjct: 266 DGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQ-LPTE------------- 311 Query: 549 NEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEP 608 E Y K++ + KPV++RT D ++ + L P Sbjct: 312 ---EEQFEAY--------KEVVQ-------RMDGKPVVIRTLDIGGDKELSYL----QLP 349 Query: 609 NEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVL 668 E NP LG+R + F + AL N+KVM P + T+EE ++ Sbjct: 350 KELNPFLGFRAIRLCLE--KQDIFRTQLRALL---RASTYGNLKVMFPMIATLEELRQAK 404 Query: 669 EILRKNNLESGKNG------LEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGV 722 I+++ + G +E+ IM E+P + A+ F D FSIG+NDL Q T+ Sbjct: 405 AIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAA 464 Query: 723 DRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITS 782 DR +E VS+++ + A+L++ I+A K+ G+CG+ D L+ G+ Sbjct: 465 DRMNERVSYLYQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDE 523 Query: 783 ISLNPDSVIPTWNAVAKLE----KELKEHGLTAR 812 S++ S++P + + KL K + L Sbjct: 524 FSMSATSILPARSQLLKLSKEELKPFAQKALMLD 557
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 148 bits (374), Expect = 8e-49 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFKELSNTAEKEDDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E K + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDRLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 281 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 339 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 340 TKLKGNGLGLA 350 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 350 bits (899), Expect = e-122 Identities = 118/345 (34%), Positives = 189/345 (54%), Gaps = 27/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 SITSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMVLSLKNPNFKNAIQ 186 ++ SA + NGA IERE+ +VL L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNGV----FGKGAAVALDPKTIQITRPERFSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPVVVTSQDITLKITKEPLN---------NSKNAQDLDSMSLDTAHN 293 ++GTIV G D+ + V V+ +T+++T+ P + D M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 294 TLSSNGKNITIAGVMKALQKIGVSAKGIVSILQALKKSGAISAEM 338 G ++ ++ L IG+ A GI++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.031 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 263 IVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRG 322 +V T + ++++ + L K L+ + A+I+A A V +AT++A RG Sbjct: 453 LVGTISIEKSELVSNELTKAGIKHNVLNAKFHANE--AAIVAQAGYPAAVTIATNMAGRG 510 Query: 323 LDI 325 DI Sbjct: 511 TDI 513
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.009 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANIIMRLNPR----FKPHNGEVLFETTNLLKESEEF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 549 bits (1416), Expect = 0.0 Identities = 173/582 (29%), Positives = 292/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALIVFLLIYPFKEKNYVQGGYGVLFERLDPSDNALIL 70 +++ +L +I LI AG A++V ++++ K +Y LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVSKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ + I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKIKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + ++P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLHYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL + + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GTPKKQIGGVPGVVSN-IGPVQGLKDNKEQEKYEKSQN---------------------- 341 G GGVPG +SN P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +++I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMRKTQKVLGSFTPLIKYVLVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 TFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (895), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 39.0 bits (90), Expect = 7e-06 Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 14/211 (6%) Query: 44 ISQEPLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIG 102 ++ E I + + L L +LQMQ A E+ +A I + G+K G Sbjct: 15 LAPPQAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQG 71 Query: 103 FKEGEEKMRNELTHSVNEEKNQLLHAITALDEKMKSSQNHLMALE----KELSAIAIDMA 158 ++EG + L + E K+Q + + + Q L AL+ L +A++ A Sbjct: 72 YQEG---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAA 128 Query: 159 KEVILKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNEHLQNASKI---KL 215 ++VI + ++ + + + L + L + L+V+P D +++ L + +L Sbjct: 129 RQVIGQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRL 188 Query: 216 ESNEAISKGGVMITSSNGSLDGNLMERFRTL 246 + + GG +++ G LD ++ R++ L Sbjct: 189 RGDPTLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 145 bits (367), Expect = 5e-39 Identities = 100/437 (22%), Positives = 177/437 (40%), Gaps = 85/437 (19%) Query: 11 NIRNFSIIAHIDHGKSTLADCLIFECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 67 I N ++AH+D GK+TL + L++ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 68 RLNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 127 +F+ E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 ----SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 128 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSSANEVSAKAKIGIKD--------- 178 + + INKID ++ V QDI++ + + +V + + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 179 -------LLEKIITTIPAPSGDASAPLKALIYD-------------------------SW 206 LLEK ++ + + ++ + Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 207 F--------------------DNYLGALALVRIMDGNINTEQEILVMGTGKKHGVLGLYY 246 F LA +R+ G ++ + + K + +Y Sbjct: 238 FYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYT 296 Query: 247 PNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDAKNPTPKPIEGFMPAKPFV 303 + GEI I+ L L SV +GDT P + IE P + Sbjct: 297 SINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL---PQRERIEN---PLPLL 346 Query: 304 FAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFGFRVGFLGLLHMEVIKERL 363 + P + + E L +ALL++ +D L + +S+ + FLG + MEV L Sbjct: 347 QTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALL 403 Query: 364 EREFSLNLIATAPTVVY 380 + ++ + + PTV+Y Sbjct: 404 QEKYHVEIEIKEPTVIY 420 Score = 31.4 bits (71), Expect = 0.013 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 407 IKEPFVRATIITPSEFLGNLMQLLNHKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 466 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 467 LKSCTKGYASFDYEPIENREAN 488 L T G + E Sbjct: 593 LTFFTNGRSVCLTELKGYHVTT 614
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 28.6 bits (64), Expect = 0.026 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 10/53 (18%) Query: 14 WVGTIVIVLLVIFFIAQAFIIPSRSMVGTLYEGDMLFVKKFSYGIPIPKIPWI 66 W+G L ++ ++ S+VG ++ ++ PIP P++ Sbjct: 225 WLG--WQALPIVLLLS--------SLVGAFMGIGLILLRNHHQSKPIPFGPYL 267
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.0 bits (65), Expect = 0.011 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 87 LQSYSVMLFFNVLLLIDILGFLPFSIYHHFMASLIFSALFCGSLFLSSPLLGVIALMALS 146 L Y F ++L+ +LPFS S + + +L PLL V ALMA++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 147 SSLL 150 S ++ Sbjct: 101 SHVV 104
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.9 bits (67), Expect = 0.018 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 156 HSFPKLTIIIEHLSD---WRSIALIEKHDNLYATLTLHHIS---MTLDDLLGGSLNPHCF 209 +L II + D +AL D LT+ IS TL+ LLGGS Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLALGNGQDLRTGILTVDEISNQSTTLNKLLGGSQ----- 550 Query: 210 CKPLIKTKKDQERL 223 C+PL K ++ Q+ L Sbjct: 551 CQPLNKAQEVQKWL 564
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 50.0 bits (119), Expect = 3e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPKPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 46.5 bits (110), Expect = 4e-08 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPTPPKPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVAEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 40.0 bits (93), Expect = 5e-06 Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 34/214 (15%) Query: 98 PTPPKPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVAEEKKEEKKVV 157 P +PP +P +P EP+P+P+P P+ P +E V EK + K Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------------KEAPVVIEKPKPKPKP 98 Query: 158 EQKVEHKKVEEKKPAKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTKRDIDELYGEEFGD 217 + K K E+ K K + P N T + Sbjct: 99 KPKPVKKVQEQPKRDVKPVESR----------PASPFENTAPARLTSSTATAATSKPVTS 148 Query: 218 LGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKIIVGS 277 + + + RN + YP A L +G V+F + P+G + +++I+ Sbjct: 149 VASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAK 197 Query: 278 EYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 311 M + ++ + +P + ++ I + Sbjct: 198 PANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 39.2 bits (91), Expect = 9e-06 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 74 QDPSKNNPGAPKPTLAGPQKPPTPPTPPKPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 35.3 bits (81), Expect = 2e-04 Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 74 QDPSKNNPGAPKPTLAGPQKPPTPPTPPKPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P P+P P++ P PKP PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 33.0 bits (75), Expect = 0.001 Identities = 13/52 (25%), Positives = 17/52 (32%) Query: 75 DPSKNNPGAPKPTLAGPQKPPTPPTPPKPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P PKP K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 101 bits (252), Expect = 9e-31 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 27.4 bits (60), Expect = 0.041 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Query: 72 LASLEEVKEIIKSVSYFNNKSKHLINMAQKVVRDFNGVIPSTQKELMSLDGVGQKTANVV 131 A +E+VKE + + +++ + AQKV+ NG+ PS + ++++ V + +NVV Sbjct: 181 FAKVEQVKETLMASERALDET---VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>FLAGELLIN#Flagellin signature. Length = 507 Score = 241 bits (615), Expect = 1e-75 Identities = 125/518 (24%), Positives = 208/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKISSSAGTGIGVLAEVINKNSNQTGVKAYANVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGNLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQNGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SLDGRGIEIKTDSTNGVPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K +T V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 AGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.020 Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 208 LARMIALQKKLEQIQTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 260 LAR+ + ++ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 261 FALEQNRLTLEYLTNLNVKNLKKTTIDAPNLQLRERQD-LVSLREQISALRYQ 312 + + + +T K +D +LR+ D + L +++ + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 5e-09 Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 40 SAGIVDSIKVTEGSVVKKGDVLLLLYNQEKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDK 99 IV I V EG V+KGDVLL L +A + T+ L+ A+ + RY + +++ Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 100 NTLESYEFN 108 N L + Sbjct: 163 NKLPELKLP 171 Score = 31.3 bits (71), Expect = 0.003 Identities = 21/152 (13%), Positives = 48/152 (31%), Gaps = 25/152 (16%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLESYEFNYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D + + E ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDN--IGLLTLELAKNEER-------QQASV 329 Query: 128 LRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIE--FDSKYINAVKVG------ 179 +RAP + + GV L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIK 389 Query: 180 -DTYTYSIDGDSNQHEAKITKIYP--TVDENT 208 + + Y+ G K+ I D+ Sbjct: 390 VEAFPYTRYGYL---VGKVKNINLDAIEDQRL 418
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 892 bits (2307), Expect = 0.0 Identities = 291/1040 (27%), Positives = 521/1040 (50%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSINKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ I+ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILINAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKRIQAISP-NYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT +++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 +N TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPRHS-------RFYVWSEPFFKALESYYTKLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F ++YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMDFMLKEDRGRFQVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G F ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHAEVEFTTLQVGY-GTSQNPFRAKIFVQLKPLEERKKEHQLGQFELMRALKKELRS 631 + + E FT + G +QN FV LKP EER + + + RA K EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNGDENSAEAVIHRA-KMELGK 656 Query: 632 LPEAKDLESINLSEVALIGGGGDSSPFQTYVFSHSQEAVDKSVANLKKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETQSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RSAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIALATAFVLIYMILA 871 + G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGSAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G GS ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 275 bits (705), Expect = 8e-77 Identities = 102/397 (25%), Positives = 181/397 (45%), Gaps = 14/397 (3%) Query: 2799 AGNHSIMWLNELFVAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSKPNLKNNSTD 2858 +G L L + + +A + I + T+ L ++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2859 VLQLNTYTQQMGRLAKLSNFASFDSTDFSERLSGLKNQRFADAIPNAMDVILKYSQRDKL 2918 L L+ RL LS + F++RL LK+QRFA + +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2919 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFIKG---VIVGGYAAYGYSGFYER--ITN 2973 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + N Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2974 SKSDNVDVGLYARAFIKKSELTFSINETWGANKTQISSTDTLLSMINQSYKYSTWTTNAK 3033 S ++N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ + Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3034 VNYGYDFMFKNKSVIIKPQISLGYYYIGMTGLEGVMDNSLYNQFKANADPSKKSVLTIDF 3093 +YGYDF F ++++KP + + Y ++G T + + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3094 ALENRHYFNTNSYFYAIGGIGRDLLVRSMGDKLVRFIGNNTLSYRKGELYNTFASITTGG 3153 +E R+Y+ SYFY G+ ++ + V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFANFGSSNA-VSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3154 EVRLFKSFYANAGVGARFGLDYKMINITGNIGMRLAF 3190 E++L K + N G L + + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 36.5 bits (84), Expect = 0.002 Identities = 56/360 (15%), Positives = 112/360 (31%), Gaps = 48/360 (13%) Query: 117 YIGTKNASATPNNNSIWFGEKGYIGFITGVFKAKDIFITGNVGSGNEWKTGGGAILVFES 176 I T + N N + G+ G+ + ++G+ + W++ G I+ Sbjct: 275 TINTSKVTGEVNFNHLTVGDHNAAQ--AGIIASNKT----HIGTLDLWQSAGLNIIAPPE 328 Query: 177 SN-----ELTTNGAYFQNNRAGTQNSWMNLISNHSVHLTNTNFSNQTPHGGFNVMGRKIT 231 + N + Q S N + ++ N+ + Sbjct: 329 GGYKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSAQKTEIQP----------- 377 Query: 232 YNSGIINGGNFGFDNVDSHGTTTISGVTFNDNGALTYKGGNSIGGSITFTNSNINHYKLN 291 + +I+G G T ++ N N T + G S+T ++++ K Sbjct: 378 --TQVIDGPFAG------GKNTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGG 428 Query: 292 LNANSITFNNSALGSMPNGNANTVGEAYILNASNITFNNLTFNGGWFVFNRPDAHVNFQG 351 +N ++ S L GN G + N G A+ F+ Sbjct: 429 INLSNQASGRSLLVENLTGNITVDGPLRV----NNQVGGYALAGS-------SANFEFKA 477 Query: 352 ITTINNPTSPFINMTGKVTINPNAIFNIQNYTPTIGSAYTLFSMKNGNITYNGVSDLWNI 411 T N T+ F N + I + F+ + ++GV++ NI Sbjct: 478 GTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNI 533 Query: 412 IRLKNTQATKDNSKNAASSNNTHTHYVTYNLGGTLYHFRQIFSPDSIILQSIHYGANNIH 471 +L A+ + + + N ++G + I S I + G +I+ Sbjct: 534 NKL--ITASTNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIY 591 Score = 34.2 bits (78), Expect = 0.012 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 4/97 (4%) Query: 702 YSFEGANNAFNSSKFNHGSFHFSHAEQTNAFNNNSFSGGSFSFNAKQVDFSGNSFNGGVF 761 YS + FNH + +A Q +N G+ + + + G + Sbjct: 273 YSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGGY 331 Query: 762 DFNNTPKANFNNDTFNVNNQFKLNGSQTTFSFNKVVF 798 P +N T N K SQ S +V+ Sbjct: 332 KDK--PNDKPSNTTQNNAKNDKQESSQNN-SNTQVIN 365 Score = 31.9 bits (72), Expect = 0.049 Identities = 51/273 (18%), Positives = 83/273 (30%), Gaps = 35/273 (12%) Query: 983 FKANQIDITGTIRSGNGAKTGGG-----AILVFNAQERLNIA-NANLNNDKAGLQDSWMN 1036 F A I I + N +G G +L A E + NA ++ + N Sbjct: 190 FNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASN 249 Query: 1037 FIVNNGNVNATNANFSNQTPHGGFNL----KADNITWNKGSVSGGGSFGVDNANSHGTTT 1092 + GNV + ++ K G + + T Sbjct: 250 SVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTH 309 Query: 1093 ISGVTFND----NGTLIYKGGENDAGNSLTLENNTFNSYNINARVQNLIFNNNSFNGGSY 1148 I + N +GG D N N T N+ + + NNS Sbjct: 310 IGTLDLWQSAGLNIIAPPEGGYKDKPND-KPSNTTQNNAKND---KQESSQNNSNTQVIN 365 Query: 1149 SFNDTKNTTFK-----------GTNTLINSDPF-SRLQGSIAIDHNSVFNIERNLTNNTT 1196 N + T + G NT++N + + G+I F +LT N Sbjct: 366 PPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTI---RVGGFK--ASLTTNAA 420 Query: 1197 YTLLSGDSIKYNNQILADNVFSKNLWNLIHYDG 1229 + + I +NQ ++ +NL I DG Sbjct: 421 HLHIGKGGINLSNQASGRSLLVENLTGNITVDG 453
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 30.0 bits (67), Expect = 0.001 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVGSERKSSFNISLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 2e-10 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Query: 194 ILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLNYLYEKEHYEKVGVVITDLEMPNIS 253 IL+A+D + L + + N L ++ +V+TD+ MP+ + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA----GDGDLVVTDVVMPDEN 61 Query: 254 GFEVLKTIKA-DPKTNHIPVIINSSMSSDSNRQLAQSLEADGFVVKSNILE 303 F++L IK P +PV++ S+ ++ A A ++ K L Sbjct: 62 AFDLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 144 bits (365), Expect = 1e-48 Identities = 30/90 (33%), Positives = 45/90 (50%) Query: 3 AVTFDLDTNCLNENGVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQIL 62 A+ FDL T L + + + YS I+KFM ++GF+ +Q S Y E IN + V L Sbjct: 7 AINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGYTSKEPINERRVIRIVNKL 66 Query: 63 AKQIPCFANCVKDVRMLKIEENNDLMPAIK 92 K+ CVK+ + +I E L I+ Sbjct: 67 TKKFTWLGECVKEFDITEIGEQYSLKETIQ 96
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 752 bits (1943), Expect = 0.0 Identities = 225/1044 (21%), Positives = 466/1044 (44%), Gaps = 42/1044 (4%) Query: 5 IIEFSLRQRVIVIVCAILILFFGTYSFINTPVDAFPDISPTQVKIILKLPGSSPEEMENN 64 + F +R+ + V AI+++ G + + PV +P I+P V + PG+ + +++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 IVRPLELELLGLKGQKSLRSVSKYSIS-DITIDFDDSVDIYLARNIVNERLASVMKDLPV 123 + + +E + G+ + S S + S IT+ F D +A+ V +L LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GVEGGMAPIVTPLSDIFMF----TIDGNITEIEKRQLLDFVIRPQLRMISGVADVNSIGG 179 V+ + S M + + T+ + + ++ L ++GV DV G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 FSKAFVIVPDFNDMARLGVSISDLEAAVRVNLRNSGAGRVDR----DGETFLVKI--QTA 233 A I D + + + ++ D+ ++V AG++ G+ I QT Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 234 SLSLEDIGKITV--STNLGHLHIKDFAKVISQSRTRLGFVTKDGIGETTEGLVLSLKEAN 291 + E+ GK+T+ +++ + +KD A+V +G + AN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING-KPAAGLGIKLATGAN 298 Query: 292 TKEIIAQVYQKLEELKPFLPNGVFINVFYDRSEFTQKAIATVSKTLIEAIVLIIITLFLF 351 + + KL EL+PF P G+ + YD + F Q +I V KTL EAI+L+ + ++LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 LGNLRASVAVGVILPLSLSVAFIFIKLNNLTLNLMSLGGLIIAIGMLIDSAVVVVENAFE 411 L N+RA++ + +P+ L F + ++N +++ G+++AIG+L+D A+VVVEN E Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV-E 417 Query: 412 TLSANTKTTKLHAIYRSCKEIAVSVVSGVVIIIVFFVPILTLQGLEGKMFRPLAQSIVYA 471 + K A +S +I ++V +++ F+P+ G G ++R + +IV A Sbjct: 418 RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 472 LLGTLVLSITIIPVVSSLVLK--ATPHSET---FLTRFLNKIYAPLLDFFVHNPKKVI-- 524 + ++++++ + P + + +LK + H E F F N + ++ + ++ K++ Sbjct: 478 MALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWF-NTTFDHSVNHYTNSVGKILGS 536 Query: 525 ----LGAFVFLIA-SLSLFPFVGKNFMPALDEGDVVLSVETTPSISLDQSRDLMLNIEST 579 L + ++A + LF + +F+P D+G + ++ + ++++ ++ + Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 580 IKKHVKEVKTIVARTGSDELGLDLGGLNQTDTFISFIPKKEWSVKTKDELL-DKILDALK 638 K+ K V G G Q + ++F+ K W + DE + ++ K Sbjct: 597 YLKNEKANVESVFTVN----GFSFSGQAQ-NAGMAFVSLKPWEERNGDENSAEAVIHRAK 651 Query: 639 -DFKGINFSFTQPIEM-RISEMLTGVRGDLA-VKIFGDDISALNELSFQIA-QALKGIKG 694 + I F P M I E+ T D + G AL + Q+ A + Sbjct: 652 MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPAS 711 Query: 695 SSEVLTTLNEGVNYLYVTPNKEAMANVGISSDEFSKFLKSALEGLIVDVIPTGISRTPVM 754 V E + ++E +G+S + ++ + +AL G V+ + Sbjct: 712 LVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLY 771 Query: 755 IRQESDFASSITKIKSLALTSKYGVLVPITSIAKIEEVDGPVSIVREDSMRMSVVRSNVV 814 ++ ++ F + L + S G +VP ++ V G + R + + ++ Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 815 GRDLNSFVEEAKKVISHNIKLPPSYYITYGGQFENQQRANKRLSTVIPLSILAIFFILFF 874 + + + KLP + G ++ + + ++ +S + +F L Sbjct: 832 PGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 875 TFKSIPLALLILLNIPFAVTGGLIALFVVGEYISVPASVGFIALFGIAVLNGVVMIGYFK 934 ++S + + ++L +P + G L+A + + V VG + G++ N ++++ + K Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 935 ELLL-QGKSIEECVLLGAKRRLRPVLMTACIAGLGLIPLLFTHSVGSEVQKPLAIVVLGG 993 +L+ +GK + E L+ + RLRP+LMT+ LG++PL ++ GS Q + I V+GG Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 994 LVTSSALTLLLLPPMFMLIAKKIK 1017 +V+++ L + +P F++I + K Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRCFK 1033
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.041 Identities = 12/84 (14%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Query: 46 SKGLPFNAYIDFDSKSSVVQSLSFDASVVAVYKREGEQVKAGDVICEVSSID-------L 98 N + +S ++ + ++ V + +EGE V+ GDV+ +++++ Sbjct: 81 EIVATANGKLTHSGRSKEIKPIE-NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKT 139 Query: 99 SNLYFELQNNQNKLKIAKDITKKD 122 + + + Q + +I + + Sbjct: 140 QSSLLQARLEQTRYQILSRSIELN 163
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 27.1 bits (60), Expect = 0.008 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 1/47 (2%) Query: 38 VENIFALETHELKTDAHLSTPLREDEPKSQNTAKDILSQNKHSQDHY 84 ++N FAL L + P + +L+ + + Sbjct: 34 IDNTFALTLSCDYARERLLLIGLLE-PHKDIPQQCLLAGALNPLLNA 79
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 29.6 bits (66), Expect = 0.006 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 26 VKKEIPTVSFTH-QNPSQTEKTHDINLEENPNNHDTPNNEKALHNEEDRNNTLSQNLDAQ 84 +K+ I + F + P+ + + N +NPNN D PNN +N ++ +N + N D Sbjct: 274 LKQNIEDIHFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNP 333 Query: 85 DS 86 D+ Sbjct: 334 DA 335
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.017 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%) Query: 136 GVKPEETLDFYSQISETCKRIQLKGLMCIGAHTDDETKIEKSF 178 G +P+ L + Q+ + LM A + I + Sbjct: 132 GFQPDRVLTVWQQL-RAMANVGEMTLMSHFAEAEHPDGISGAM 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 59.1 bits (143), Expect = 7e-12 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 13/129 (10%) Query: 182 GEVLFLDDSKTARKTLKNHLSKLGFNITEAVDGEDGLNKLEMLFKKYGDDLRNHLKFIIS 241 +L DD R L LS+ G+++ + + +++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA----------AGDGDLVVT 53 Query: 242 DVEMPKMDGYHFLFKLQKDPRFAYIPVIFNSSICDNYSAERAKEMGAVAYLVK-FDAEKF 300 DV MP + + L +++K +PV+ S+ +A +A E GA YL K FD + Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 301 TEEISKILD 309 I + L Sbjct: 112 IGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.6 bits (134), Expect = 5e-10 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 686 VLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGY 745 +L DD + R ++ + L G + +N + GD D ++ D+ MP + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDENAF 63 Query: 746 TFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKL 805 ++K +LP++ ++++ T ++ E G +Y+ KP+ L ++ R++ Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 806 E 806 Sbjct: 122 P 122
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 73.9 bits (181), Expect = 9e-21 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 3 AIHNDKSLLSPFSELNTDNRTQREESSSAFKEQKGGEFSKLLKQSINELNSTQEQSDKAL 62 AI + ++S R Q F+ L +++ ++ TQ + Sbjct: 2 AIQGIEGVISQLQATAMSARAQESLPQPTIS------FAGQLHAALDRISDTQTAARTQA 55 Query: 63 ADMATGQIK-DLHQAAIAIGKAETSMKLMLEVRNKAISAYKELLRTQI 109 G+ L+ + KA SM++ ++VRNK ++AY+E++ Q+ Sbjct: 56 EKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 28.4 bits (63), Expect = 0.012 Identities = 10/38 (26%), Positives = 15/38 (39%) Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158 VN E +L + Y AN Q+A + I + Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 34.2 bits (78), Expect = 6e-04 Identities = 28/183 (15%), Positives = 77/183 (42%), Gaps = 10/183 (5%) Query: 108 NVELLKKLSPDLVVTFVG-NPKAVEHAKKFGISFLSFQETT--IAEAMQAMQ--AQARVL 162 N+ELL ++ P +V G P A+ +F + +A A +++ A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 163 EIDASKKFAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQAISSDILEKGGID 219 + A A+ ++ + + R K + + + G ++ +IL++ GI Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 220 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWVSPLTPEDVLNNPKFSTIKAIKNKQVY 277 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 278 KLP 280 ++P Sbjct: 268 RVP 270
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.6 bits (74), Expect = 0.002 Identities = 28/183 (15%), Positives = 73/183 (39%), Gaps = 10/183 (5%) Query: 106 NVELLKKLSPDLVVTFVGNPKAVEHAKKF--GISFLSFQEKTIAEVMEDID---AQAKAL 160 N+ELL ++ P +V G + E + G F K + A L Sbjct: 88 NLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 161 EVDASKKLAKMQETLDFIAERL-KNVKKKKGVELFHKAN--KISGHQALDSDILEKGGVD 217 + A LA+ ++ + + R K + + + G +L +IL++ G+ Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 218 N-FGLKYVKFGRADISVEKIVK-ENPEIIFIWWISPLSPEDVLNNPKFSTIKAIKNKQVY 275 N + + +G +S++++ ++ +++ + + ++ P + + ++ + Sbjct: 208 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQ 267 Query: 276 KLP 278 ++P Sbjct: 268 RVP 270