>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1044 bits (2701), Expect = 0.0 Identities = 353/569 (62%), Positives = 442/569 (77%), Gaps = 4/569 (0%) Query: 3 KISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSN-NP 61 ++SR Y +M+GPT GDKVRL DT+L EVE D+T +GEE+KFGGGK +R+GM QS Sbjct: 4 RMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQVTR 63 Query: 62 SKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEAL 121 +D +ITNALI+D+ GI KADIG+KDG+IA IGK GN DMQ GV + VGP TE + Sbjct: 64 EGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGV--TIIVGPGTEVI 121 Query: 122 AGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKW 181 AGEG IVTAGG+D+HIHFI PQQI A SG+T M+GGGTGPA GT ATT TPG ++ Sbjct: 122 AGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIAR 181 Query: 182 MLRAAEEYSMNLGFLAKGNTSNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKY 241 M+ AA+ + MNL F KGN S +L + + GA K+HEDWGTTP+AI+ L VAD+Y Sbjct: 182 MIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADEY 241 Query: 242 DVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTN 301 DVQV IHTDTLNE+G VEDT+AAI GRT+H +HTEGAGGGHAPDII++ G+ N++P+STN Sbjct: 242 DVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSSTN 301 Query: 302 PTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSS 361 PT P+TVNT AEH+DMLMVCHHL +I ED+ FA+SRIR +TIAAED LHD+G FSI SS Sbjct: 302 PTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIISS 361 Query: 362 DSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 421 DSQAMGRVGEV RTWQTADK K++ GRLKEE GDNDNFR+KRY++KYTINPAIAHG+S Sbjct: 362 DSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLSH 421 Query: 422 YVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAH 481 +GS+EVGK ADLVLW+PAFFGVKP+M++ GG IA + MGD NASIPTPQPV+YR MF Sbjct: 422 EIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFGA 481 Query: 482 HGKAKYDANITFVSQAAYDKGIKEELGLERQVLPVKNCR-NITKKDMQFNDTTAHIEVNP 540 +G+++ ++++TFVSQA+ D G+ LG+ ++++ V+N R I K M N T HIEV+P Sbjct: 482 YGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVDP 541 Query: 541 ETYHVFVDGKEVTSKPANKVSLAQLFSIF 569 ETY V DG+ +T +PA + +AQ + +F Sbjct: 542 ETYEVRADGELLTCEPATVLPMAQRYFLF 570
>FLAGELLIN#Flagellin signature. Length = 507 Score = 39.6 bits (92), Expect = 3e-05 Identities = 36/285 (12%), Positives = 77/285 (27%), Gaps = 16/285 (5%) Query: 66 NTASSDSQEVTTLENTATTDSQTATTDQTYTKSTDTTVADAAKQVETDNTAVQSADTALQ 125 + + + + T+ + ++ D + V + V TD TA D Sbjct: 170 DGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKV-- 227 Query: 126 SAVTQVENDAKATNFDEKTFESDQQAEQTAEANLQKAENQLTNDQNALETALKDQTPSTP 185 N T+ E D + A +A+ + E D T Sbjct: 228 --YVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTF 285 Query: 186 PTKETPPAKKDETSGTPSSSGGTGGDKHTASSGSPTPSTPPTPTPSTSGGSTITSQLTKD 245 D ++ G A T + +T+ S Sbjct: 286 TIDTK--TGNDGNGKVSTTINGEKVTLTVADI---------TAGAANVDAATLQSSKNVY 334 Query: 246 TTMVNNLKSVSVSAMNTTLSGVTQLSQQTAAISNLLSGNSNLGSVITNAQGLSSAFNALE 305 T++VN + N + + + ++ N + ++ A + Sbjct: 335 TSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMF 394 Query: 306 SAQNTLKGYLDSSSATIGQLTNGTNAVVGALDKAINQVDMALADL 350 + + T + ++D A+++VD + L Sbjct: 395 IDKTASGVSTLINEDAAAAKK-STANPLASIDSALSKVDAVRSSL 438
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 29.6 bits (66), Expect = 0.043 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 15/148 (10%) Query: 437 NNMDNTHANDSKD---QGGNALINPNNATNDDHNDDHMDTNTTDTSNANDTPTDDKDAGG 493 +++ ++N +D ++ + + D + ++ N D GG Sbjct: 268 DSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGG 327 Query: 494 NNTGDMNNTDTGNTDTGNTDTGNTDDMSNMNNGND----DTGNANDDMGNSND-----MG 544 N + N G+ +D+ N+ ++ GN G D G Sbjct: 328 ---LKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGAG 384 Query: 545 DDMNNANDMNDDMGNSNDDMGDMGDMND 572 D D + D + D D Sbjct: 385 RDTFVYGSGQDSTVAAYDWIADFQKGID 412
>LUXSPROTEIN#Bacterial autoinducer-2 (AI-2) production protein LuxS signature. Length = 171 Score = 226 bits (578), Expect = 2e-79 Identities = 58/145 (40%), Positives = 92/145 (63%), Gaps = 7/145 (4%) Query: 5 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 64 ++SF +DHT++ AP VRVA + GD I +D+RF PN+D + +H+LEHL A Sbjct: 3 LDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGF 62 Query: 65 IRNHAN----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAK---EVPAS 117 +RNH N ++D SPMGC+TGFY++++ + ++ + M+DVLK + ++P Sbjct: 63 MRNHLNGDSVEIIDISPMGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPEL 122 Query: 118 NEKQCGWAANHTLEGAQDLARAFLD 142 NE QCG AA H+L+ A+ +A+ L+ Sbjct: 123 NEYQCGTAAMHSLDEAKQIAKNILE 147
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 149 bits (378), Expect = 3e-42 Identities = 77/384 (20%), Positives = 141/384 (36%), Gaps = 86/384 (22%) Query: 5 IGIDLGTTNSAMAVYEG----NEAKIIA-NKEGKNTTPSIVAFTDKGEILVGESAKRQAV 59 + IDLGT N+ + V NE ++A ++ + S+ A VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVAA--------VGHDAKQMLG 64 Query: 60 TNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKIYTPQEISAKIL 119 P I +I+ + ++G A + +++ + Sbjct: 65 RTPGN-IAAIRPM-----------------------KDGVIA-----DFFVTEKMLQHFI 95 Query: 120 MKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYG 179 ++ ++ ++ VP +R+A +E+ AG + +I EP +AA+ G Sbjct: 96 KQVHSNS---FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAG 152 Query: 180 LDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLAAEFK 239 L E+ MV D+GGGT +V V+ V +GGD FD +I+++ + Sbjct: 153 LPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRNYG 207 Query: 240 NETGIEIKNDVMALQRLKEAAENAKKELSSAM----ETEINLPFITADATGPKHLVKKLT 295 + G + AE K E+ SA EI + P+ + Sbjct: 208 SLIG-------------EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN-S 253 Query: 296 RAKFESLTEDL----------VEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQE 345 E+L E L +E+ ++ S I + G +V+ GG + + Sbjct: 254 NEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALLRNLDR 305 Query: 346 RVKAFINKELNKSVNPDEVVAVGA 369 + + + +P VA G Sbjct: 306 LLMEETGIPVVVAEDPLTCVARGG 329
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.1 bits (140), Expect = 4e-12 Identities = 61/263 (23%), Positives = 110/263 (41%), Gaps = 29/263 (11%) Query: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATL-AFTYLNESLEKRVRPIAQELNSSYVYE 62 ++GK I G A + I +A++ +QGA + A Y E LEK V + E + + Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 63 LDVSKEEHFKSLYNNIKQDLGSLDFIVHSVAF--------APKEALEGSLLETSKSAFNT 114 DV + I++++G +D +V+ E E + S FN Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 115 AMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAV 174 + +S Y + + ++ + +N A V S MA Y +KAA + L + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTS-------MAAY---ASSKAAAVMFTKCLGL 173 Query: 175 DLGKHHIRVNALSAGPIRT-----LASSGIADFRMILKWNE---INAPLRKNVSLEEVGN 226 +L +++IR N +S G T L + ++I E PL+K ++ + Sbjct: 174 ELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIAD 233 Query: 227 AGMYLLSSLSNGVSGEVHFVDAG 249 A ++L+S + ++ VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.7 bits (72), Expect = 0.003 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 7/152 (4%) Query: 31 SMQAALQSEQLALNEQAQGLQSEQLRAKMQIDFLGMQANLQSAKADTLNKLIQCQ-AMLK 89 +L EQ + Q Q Q E K + + L + A + + + ++ + + Sbjct: 185 LRLTSLIKEQFS-TWQNQKYQKELNLDKKRAERLTVLARINRYENLS--RVEKSRLDDFS 241 Query: 90 SLKDNAMINRANAFVSLLQ-VQANAANTITFHNFETAFKIIAQIGSEYDQITS-YNRNVS 147 SL I + + V+A + E I EY +T + + Sbjct: 242 SLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL 301 Query: 148 VKEKEQTNELKTLLNELGKELEKLNQQSEVNS 179 K ++ T+ + L EL K E+ Q S + + Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQ-QASVIRA 332
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.5 bits (66), Expect = 0.047 Identities = 9/53 (16%), Positives = 22/53 (41%) Query: 303 YFDPEYLKKVFTHELGEMNIYIFVDNALSLSQNADNRAIVIVGVENYNESVRY 355 + D + +K F ++ ++ I L L + + +I + N ++Y Sbjct: 810 FLDIQSIKNFFNSQVEQVMKEILSPYQLLLFASKGPNSNIIEDISGKNTLIQY 862
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 31.8 bits (72), Expect = 0.005 Identities = 33/177 (18%), Positives = 71/177 (40%), Gaps = 1/177 (0%) Query: 53 GSFLIQFLSPLMSLESIAKISFGLIALSFLVCYFDSIPFFWLWIWRFIAGVASSALMILV 112 G+ + LS + ++ + + ++ + F L + RFI G ++A LV Sbjct: 65 GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALV 124 Query: 113 APLSLPYVKEHKKALVGGLIFSAVGIGSVFSGFVLPWISSYNIKWAWIFLGGSCLIAFIL 172 + Y+ + + GLI S V +G + I+ Y I W+++ L I + Sbjct: 125 MVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHY-IHWSYLLLIPMITIITVP 183 Query: 173 SLVGLKTRSLRKKSVKKEESAFKIPFHLWLLLISCALNAIGFLPHTLFWVDYLIRHL 229 L+ L + +R K + + + ++ +I FL ++ ++H+ Sbjct: 184 FLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHI 240
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 8 LILSGPSGAGKSTLTKYL 25 ++L G G GKSTL L Sbjct: 599 VVLEGTGGIGKSTLINTL 616
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 67.4 bits (164), Expect = 9e-14 Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 21/267 (7%) Query: 140 ESLGDLEALAKEEPNNEEQL--LPTLNEQEGETLKEETQEEIKKEEVKEMQEEIKEKEKQ 197 + +++A P+N E++ + E E K+ + +++ E+ Sbjct: 998 TTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQD 1057 Query: 198 EVAEKPQDEEKPKDDETQGSVETPKDKEVSKELETQEQVETPKEEKQEQEPIKEQEPIKE 257 Q+ E K+ ++ T ++ ET+E T +E E ++E K Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE---KEEKAKV 1114 Query: 258 ETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQETTETPQDIET 317 ET++ +E + +Q SP ++ E +Q + +EN K+ +T T +T Q + Sbjct: 1115 ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKE 1174 Query: 318 QELEIPKEEETQEVAEKTQAQGLEKEEIAETPQEKEIQETQDETPQELEVQDEKLQEKET 377 + + + + E P+ TQ E Sbjct: 1175 TSSNVEQPVTESTTVNTGNS-------VVENPENTTPATTQPTVNSESS---------NK 1218 Query: 378 PKDENMQESTQNLQEKETQELETPQAQ 404 PK+ + + E + Sbjct: 1219 PKNRHRRSVRSVPHNVEPATTSSNDRS 1245 Score = 63.2 bits (153), Expect = 2e-12 Identities = 62/324 (19%), Positives = 104/324 (32%), Gaps = 41/324 (12%) Query: 193 EKEKQEVAEKPQDEEKPKDDETQGSVETPKDKEVSKELETQEQVETPKEEKQEQEPIKEQ 252 E EK+ + P + + ++E+++ E P + E + E Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 253 EPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQETTETP 312 + +T E E+ +T EA + Q N Q ET+ETQ T Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS-GSETKETQTTET-- 1100 Query: 313 QDIETQELEIPKEEETQEVAEKTQAQGLEKEEIAETPQEKEIQETQDETPQELEVQDEKL 372 KE T E EK + E E+ E P+ + E + ++ Q E Sbjct: 1101 -----------KETATVEKEEKAKV---ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 373 QEKETPKDENMQESTQNLQEKETQELETPQAQDETPQEDHYESIEDIPEPVMAKAMGEEL 432 +E + + + Q + +T Q ET + +PV Sbjct: 1147 RENDP------TVNIKEPQSQTNTTADTEQPAKETSSN--------VEQPVTESTTVNTG 1192 Query: 433 PFLNEAVAKTPNNENATETPKENTTETS-----KNENDTETPQEKEESDKTSSPLELRLN 487 +V + P N T +E+S ++ + E TSS + Sbjct: 1193 N----SVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Query: 488 LQDLLKSLNQESFKSLLENKTLSI 511 L DL S N + S K + Sbjct: 1249 LCDLT-STNTNAVLSDARAKAQFV 1271 Score = 38.9 bits (90), Expect = 5e-05 Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 15/209 (7%) Query: 109 QKKLGSNASELEPSQNLDPTQEVLETNWDELESLGDLEALAKEEPNNEEQLLPTLNEQEG 168 + + E N+ + E E+ KE E+ E++ Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEK-------EEKA 1112 Query: 169 ETLKEETQEEIKKE-EVKEMQEEIKEKEKQEVAEKPQD-----EEKPKDDETQGSVETPK 222 + E+TQE K +V QE+ + + Q + D +E T E P Sbjct: 1113 KVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 223 DKEVSKELETQEQVETPKEEKQEQEPIKEQEPIKEETQEIKEEKQEKTQDSPSAQELEAM 282 KE S +E T + TQ + + + + ++ Sbjct: 1173 -KETSSNVEQPVTESTT-VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSV 1230 Query: 283 QELVKEIQENSNDQENKKETQETQETTET 311 V+ +SND+ T T Sbjct: 1231 PHNVEPATTSSNDRSTVALCDLTSTNTNA 1259
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 195 bits (496), Expect = 1e-64 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 56 GERPLFADRRAMKPNDLITIIVSEKASANYSSS----KDYKSASGGNSTPPRLTYNGLDE 111 G +PLF DRR D +TI++ E SA+ SSS +D K+ G ++ P L GL Sbjct: 61 GYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYL--QGLFG 118 Query: 112 RKKKEAEYLDDKNNYNFTKSSNNTNFKGGGSQKKSEDLEIVLSARIIKVLENGNYFIYGN 171 + + E S F G G S L+ + +VL NGN + G Sbjct: 119 NARADVEA------------SGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGE 166 Query: 172 KEVLVDGEKQILKVSGVIRPYDIERNNTIQSKFLADAKIEYTNLGHLSDSNK 223 K++ ++ + ++ SGV+ P I +NT+ S +ADA+IEY G+++++ Sbjct: 167 KQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN 218
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 197 bits (503), Expect = 2e-57 Identities = 115/461 (24%), Positives = 190/461 (41%), Gaps = 67/461 (14%) Query: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDE--RVMDSNDLEKERGITILSKNT 60 I NI V+AHVD GKTTL + LL SG +E VD+ D+ LE++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 61 AIYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGI 120 + +++TK+NIIDTPGH DF EV R L ++DG +LL+ A++GV QT+ + GI Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 121 CPIVVVNKIDKPAAEPDRVVDEVFDLF---------VAMGASDKQLDFPV-----VYAAA 166 I +NKID+ + V ++ + V + + +F Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEG 181 Query: 167 RDGYAMKSLDDE----------------------------KKNL--EPLFETILEHVPSP 196 D K + + K N+ + L E I S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 197 SGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLMKSDGSKENGRITKLIGF 256 + L ++F ++Y ++ R+++G + +SV + KE +IT++ Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRI----SEKEKIKITEMYTS 297 Query: 257 LGLARTEIENAYAGDIVALAG--FNAMDV-GDSVVDPTNPMPLDPMHLEEPTMSVYFAVN 313 + +I+ AY+G+IV L V GD+ + P +P P + + Sbjct: 298 INGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENP----LPLLQTTVEPS 353 Query: 314 DSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEMGEGKFKVSGRGELQITILAENLRR 373 + + D LL+ + + +S G++Q+ + L+ Sbjct: 354 KPQQREMLLDALLEISDSDPLLRYYVDSAT--------HEIILSFLGKVQMEVTCALLQE 405 Query: 374 E-GFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAI 413 + E I P VI E K E H+ + P F +I Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP-PNPFWASI 445 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 396 EPFEHLVIDTPQDFSGAIIERLGKRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLT 455 EP+ I PQ++ K A + + + L EIPAR + YRS+ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 456 DTKGEGVMNHSFLEFRPFSG 475 T G V + +G Sbjct: 596 FTNGRSVCLTELKGYHVTTG 615
>PF03944#delta endotoxin Length = 633 Score = 31.2 bits (70), Expect = 0.005 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 68 LHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTA 127 L E+ LNQ + + + A +AEL A+V + + + FL+ + L+++ Sbjct: 94 LRETERFLNQRLNTDTV-ARVNAELTGLQANVEEFNRQVDNFLNPNRNAVPLSITSSVNT 152 Query: 128 TRKQVLQKLQEYQKYSSQFLDLVPLSAKKSQNLN 161 ++ L +L ++Q Q L L+PL A+ + NL+ Sbjct: 153 MQQLFLNRLPQFQMQGYQLL-LLPLFAQAA-NLH 184
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.011 Identities = 9/30 (30%), Positives = 18/30 (60%) Query: 104 IDLAKQNERKKDLEKEKKELLNKTEKQKIK 133 ++ ++ + D+++ K NKTEK+K K Sbjct: 31 VNAMNEHYTESDIKRNHKTEKNKTEKEKFK 60
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.7 bits (105), Expect = 5e-06 Identities = 38/231 (16%), Positives = 84/231 (36%), Gaps = 5/231 (2%) Query: 595 TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKQECEKLLTPEAKKKLEEAKKSIRVYLDC 654 P ++ + + ++KT + ++ T + ++ +EAK +++ Sbjct: 1023 APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT 1082 Query: 655 VSKAKNEAEKKECEKLLTPE-AKKLLEEEAKESVKAYLDCVSQAKTEAEKQECEKLLTPE 713 A++ +E KE + T E A EE+AK + + + KQE + + P+ Sbjct: 1083 NEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Query: 714 AKKKLEEAKKSIRVYLDCVSKAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQ 773 A+ E + S+ A+ ++ K + ++ + E + + + Sbjct: 1143 AEPAREND--PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPE 1200 Query: 774 AKTEAEKQECEKLLTPEAKKKLEEAKKSIRVYLDCVSQAKTEAEKQECEKL 824 T A Q + K ++S+R V A T + + L Sbjct: 1201 NTTPATTQPTVNSESSNKPK--NRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 37.4 bits (86), Expect = 7e-04 Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 8/241 (3%) Query: 849 KAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKKECEKLLTPEARKL 908 + NE + E + P A E E+V S+ + E+ E T + R++ Sbjct: 1011 PSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATET--TAQNREV 1068 Query: 909 LEESKKSVKAYLDC--VSQAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARN 966 +E+K +VKA V+Q+ +E + + + + E+AK + ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 967 EKEKKECEKLLTPEAKKKLEQQVLDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKES 1022 K+E + + P+A+ E +K + T A+ ++ K+ ++++ V + Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 1023 VRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKKECEK 1082 V V +N + + + K + SV++ V A + Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Query: 1083 L 1083 L Sbjct: 1249 L 1249 Score = 37.4 bits (86), Expect = 7e-04 Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 6/221 (2%) Query: 994 KNAKTEAEKKRCVKDLP-KDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARK 1052 + + E+ V + P ++ + V + ++K + ++ T + R+ Sbjct: 1008 PSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNRE 1067 Query: 1053 LLEEAKESVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEQEVKKSVKAYKDCVSR-AR 1111 + +EAK +VKA A++ E KE + T E + ++E K V + Sbjct: 1068 VAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTS 1127 Query: 1112 NEKEKKECEKLLTPEARKLLENQALDCLKNAK----TEAEKKRCVKDLPKDLQKKVLAKE 1167 K+E + + P+A EN +K + T A+ ++ K+ ++++ V Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 1168 SVRVYLDCVSRARNEKEKKECEKLLTPEARKLLEEAKESVR 1208 +V V N + + + K + SVR Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVR 1228 Score = 35.8 bits (82), Expect = 0.002 Identities = 36/237 (15%), Positives = 80/237 (33%), Gaps = 23/237 (9%) Query: 1277 EESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCLSQARNETE 1336 S+ + + ++K + ++ T + R++ +EAK +VKA A++ +E Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 1337 RRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKYLTPEARKFLEKQRQ 1396 + + T E + ++E +A+ E EK + +T + +Q Sbjct: 1092 TKETQTTETKETATVEKEE-------------KAKVETEKTQEVPKVTSQV-----SPKQ 1133 Query: 1397 QKDKAIKDCLKNADPNDRAAIMKCLDGL-----SDEEKLKYLQEAREKAVLDCLKTARTD 1451 ++ + ++ + A ND +K E+ K E+ V + + Sbjct: 1134 EQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGN 1193 Query: 1452 EEKRKCQNLYSDLIQEIQNKKAQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQC 1508 +N Q N ++ NK + D+ + C Sbjct: 1194 SVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250 Score = 35.4 bits (81), Expect = 0.003 Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 7/237 (2%) Query: 475 AKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEAKKKLE 534 A+ DE E +A+ S + K ++ E + + EAK ++ Sbjct: 1018 ARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVK 1077 Query: 535 --QQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEK 592 Q + ++ +E + ++ + AK + ++ + K+E + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSE 1137 Query: 593 LLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKQECEKLLTPEAKKKLEEAKKSIRVYL 652 + P+A+ E + ++K SQ T A+ ++ K + ++ + E+ Sbjct: 1138 TVQPQAEPARENDPTVNIKEP---QSQTNTTADTEQPAKETSSNVEQPVTESTTVNT--G 1192 Query: 653 DCVSKAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKQECEKL 709 + V + + + E+ + + SV++ V A T + + L Sbjct: 1193 NSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 33.9 bits (77), Expect = 0.009 Identities = 24/156 (15%), Positives = 63/156 (40%), Gaps = 4/156 (2%) Query: 796 EEAKKSIRVYLDCVSQAKTEAEKQECEKLLTPEAKKLLEESKKSVKAYLDC--VSKAKNE 853 ++ + V + ++KT + ++ T + +++ +E+K +VKA V+++ +E Sbjct: 1032 TPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSE 1091 Query: 854 AERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKKECEKLLTPEARKLLEESK 913 + + + + E+AK + ++ K+E + + P+A E Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREND- 1150 Query: 914 KSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEE 949 + SQ A+ ++ K + + + E Sbjct: 1151 -PTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Score = 33.5 bits (76), Expect = 0.010 Identities = 35/209 (16%), Positives = 77/209 (36%), Gaps = 16/209 (7%) Query: 9 ETSKKAQQDSPQDLSNEEATEANHFEDLLKEESSDNHLDNPTETKTHFDEDKLEETQTQM 68 E SK Q+ + + ++ATE + +E+ N N + + +ETQT Sbjct: 1042 ENSK--QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT- 1098 Query: 69 DSGGNETSESSNGSLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLNEEDDQENNEHQEE 128 ET E++ + KA+ + + + S Q+ +E + +E Sbjct: 1099 -----ETKETATVEKEE----KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 129 TQTDLIDGETSEKAQQDSPQDLSNEEATEANHFEDLLKEESSDNHLDNPTESSDNHLDNS 188 T I ++Q ++ D +++ E + E ++ N ++ E+ +N + Sbjct: 1150 DPTVNIK---EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 189 AE-TKTQETKTHFDEDKLEEITDDSNDQE 216 + T E+ + ++ E Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVE 1235
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 864 bits (2234), Expect = 0.0 Identities = 516/522 (98%), Positives = 517/522 (99%), Gaps = 1/522 (0%) Query: 1 MEQAFFKKIVGCFCLGYLFLSSVIEAAP-DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 59 M QAFFKKIVGCFCLGYLFLSS IEA DIKNFNRGRVKVVNKKIAYLGDEKPITIWTS Sbjct: 1 MGQAFFKKIVGCFCLGYLFLSSAIEAVALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS 60 Query: 60 LDNVTVIQLEKDETISYITTGFNKGWNIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 119 LDNVTVIQLEKDETISYITTGFNKGW+IVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR Sbjct: 61 LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR 120 Query: 120 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 179 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL Sbjct: 121 DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL 180 Query: 180 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 239 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA Sbjct: 181 ENLTNAMSNPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA 240 Query: 240 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 299 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD Sbjct: 241 EEAVRQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD 300 Query: 300 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 359 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE Sbjct: 301 NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMASNE 360 Query: 360 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 419 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF Sbjct: 361 QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF 420 Query: 420 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 479 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK Sbjct: 421 DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK 480 Query: 480 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 521 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK Sbjct: 481 DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK 522
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 117 bits (294), Expect = 3e-34 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 10/205 (4%) Query: 27 KLNKTNRTFKRAFYL---SMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVKRSD 83 KL R+ K A+ + + AL A V ++ + PLK + +V +DR TGE I + Sbjct: 24 KLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAKLH 83 Query: 84 A-RQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQ 142 I EAV + +V G+ + + D +M Q + R + + Q Sbjct: 84 GDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDNPQ 143 Query: 143 FVDKVRA-EAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFA 201 + A + I + +F +T T TI Y Sbjct: 144 SPQNILANRTDVFVEI-KRVSFLGGNVAQVYFTKESVTGSNS----TKTDAVATIKYKVD 198 Query: 202 RGNSSQENLIINPFGFKVFDIQITD 226 S + + NP G++V + Sbjct: 199 GTPSKEVDRFKNPLGYQVESYRADV 223
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 32.1 bits (72), Expect = 0.003 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Query: 24 AINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARAEQI 83 A+N AL+ +Y+E + K K + D KE+ +++K EK + + +A++ Sbjct: 112 AVNFALMTRDYQEFL----KTKKLIVDAPDPKELEEQKKAL------EKEKEAKEQAQKA 161 Query: 84 QKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSSTETKSNKDDNFDEM 142 QK+ K +++A L+ L +NP N + N N S K +++ D+M Sbjct: 162 QKD------KREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQM 214
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 0.015 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 18/88 (20%) Query: 19 EVQKRQFQKIEELKADMQKGINPFFKVLFDGGNRLFGFPETFIYSSI-------FILFVT 71 + K K+ EL+ +G+ +D F+ SI F + Sbjct: 301 DTAKAIKAKLAELQPFFPQGMK--VLYPYD--------TTPFVQLSIHEVVKTLFEAIML 350 Query: 72 IVLSVILF-QAYEPVLIVAIVIVLVALG 98 + L + LF Q LI I + +V LG Sbjct: 351 VFLVMYLFLQNMRATLIPTIAVPVVLLG 378
>PF07132#Harpin protein (HrpN) Length = 356 Score = 33.1 bits (75), Expect = 1e-04 Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 37 IGGGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIG 81 +G +G G+GG +GG+ +LGG G + G G+GGG+G+ G+ +G Sbjct: 61 MGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLG 105 Score = 31.6 bits (71), Expect = 4e-04 Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 34 GKLIGGGVGAGMGGAMGGMIGALGGPWGTVFGAGIGGGIGAYSGAEIGD 82 G ++GGG+G G+GG + G GG G G G+G +G+ G+ +G Sbjct: 62 GSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGG 110
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 274 bits (701), Expect = 2e-95 Identities = 112/245 (45%), Positives = 162/245 (66%), Gaps = 2/245 (0%) Query: 1 MRFFIFLILICPLICPLMSADSTLPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLI 60 MR + + + L A + LP + S P + + + +T L P+++ Sbjct: 1 MRRLLSVAPVL-LWLITPLAFAQLPGIT-SQPLPGGGQSWSLPVQTLVFITSLTFIPAIL 58 Query: 61 LVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMD 120 L+MTSFTR+I+VF LR ALGT PP Q+L+ L+L LTFFIM P + K Y +P+ + Sbjct: 59 LMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSE 118 Query: 121 KKISYTEAFEKSALPFKKFMLKNTREKDLALFFRIRNLPNPKTPDDVSLSVLIPAFMISE 180 +KIS EA EK A P ++FML+ TRE DL LF R+ N + P+ V + +L+PA++ SE Sbjct: 119 EKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSE 178 Query: 181 LKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN 240 LKTAFQIGF +++PFL+ID+VI+S+LMA+GMMM+PP I+LPFK+++F+LVDG+ LL + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVASF 245 L SF Sbjct: 239 LAQSF 243
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.4 bits (81), Expect = 6e-04 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Query: 487 LENKSAPEETKEVKDFKISSLREKILPKP-------TTETTAEIQEKEIKEKEVQENETK 539 N A + + +I+ + E +P P TTET AE ++E K E E + Sbjct: 1000 PNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDAT 1059 Query: 540 ETKETQPKEAPTALQEFMANHSEL-IEEIKSEFE 572 ET + A A AN + + SE + Sbjct: 1060 ETTAQNREVAKEAKSNVKANTQTNEVAQSGSETK 1093
>SECA#SecA protein signature. Length = 901 Score = 27.9 bits (62), Expect = 0.013 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 71 RIARKNLSKMSEEDFKKMREEVRK--ELEEKTKGLSDEEIKAK 111 ++ K ++ ++MR+ V +E + + LSDEE+K K Sbjct: 4 KLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGK 46
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 25.8 bits (56), Expect = 0.041 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 19 LNQKIELEVFDLVVESLRNQIPLDKRFKDHALVGTYKGCRE-----CHIK-PDV--LLVY 70 +I LE F+ + E++++++ FKD +L G + H+K P +L Y Sbjct: 151 NQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPY 210 Query: 71 RVKNNVLTLVRLG 83 N+V TL+ Sbjct: 211 INSNDVKTLIEQD 223
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 478 bits (1233), Expect = e-171 Identities = 192/405 (47%), Positives = 271/405 (66%), Gaps = 9/405 (2%) Query: 1 MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVI 60 M+ILV+N GSSS+K++L + K+ LA GLAE+IG L N +++K K + Sbjct: 1 MKILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLTHN----ANGEKIKIKKDM 56 Query: 61 KDHASGLLMIRENLT--KMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMREIGNLS 118 KDH + ++ + L G+IKD ++IDA+GHRVV GG+ F + VL+ + V++ I + Sbjct: 57 KDHKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCI 116 Query: 119 ILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHASMPSYAYMYALPYGLYEKYQIRRY 178 LAPLHNPAN+ GI+ + P +P +AVFDTAFH +MP YAY+Y +PY Y KY+IR+Y Sbjct: 117 ELAPLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKY 176 Query: 179 GFHGTSHHYVAKEAAKFLNIPYEEFNAISLHLGNGSSAAAIQNGKSVDTSMGLTPLEGLI 238 GFHGTSH YV++ AA+ LN P E I+ HLGNGSS AA++NGKS+DTSMG TPLEGL Sbjct: 177 GFHGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLA 236 Query: 239 MGTRCGDIDPTVVEYIAQCANKSLEEVIKILNHESGLKGICG-DNDARNIEARK-EKGDK 296 MGTR G IDP+++ Y+ + N S EEV+ ILN +SG+ GI G +D R++E + GDK Sbjct: 237 MGTRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDK 296 Query: 297 QARLAFEMCTYRIKKYIGAYMVVLKKVDAIIFTGGLGENYSALRESVCEGLENLGIVLNK 356 +A+LA + YR+KK IG+Y + VD I+FT G+GEN +RE + +GLE LG L+K Sbjct: 297 RAQLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDK 356 Query: 357 TINNEPGSGLVDLSQPNTKIQILRIPTDEELEIALQAKEMVEKLK 401 N G +S ++K+ ++ +PT+EE IA +++VE LK Sbjct: 357 EKNKVRGEE-AIISTADSKVNVMVVPTNEEYMIAKDTEKIVESLK 400
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.4 bits (86), Expect = 1e-04 Identities = 43/234 (18%), Positives = 74/234 (31%), Gaps = 13/234 (5%) Query: 278 KRDKTLSKKNSEKTPIHAKTQTTAPSATPENAPKISLKTLPLMPLIGANPPNDNIPTPLE 337 KR++T+ N Q PS N + P+ P A TP E Sbjct: 987 KRNQTVDTTNITTP---NNIQADVPSVPSNNEEIARVDEAPVPPPAPA--------TPSE 1035 Query: 338 KEEKTKEVSDNKEKAKETSSSAQSAQNTPASDKTSENKNIAPKETIKHFTQQLKQEIQEY 397 E E S + K E + + + E K+ T + Q E +E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET 1095 Query: 398 KPPMSKISMDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNTLGF 457 + +K + + +E KVE + + V +T + + + T+ Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 458 EGVDLSFSQDSSKEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDHENQETS 511 + + + EQ A + E T N S EN ++ T+ Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTT--VNTGNSVVENPENTTPATT 1207 Score = 35.8 bits (82), Expect = 4e-04 Identities = 51/279 (18%), Positives = 96/279 (34%), Gaps = 45/279 (16%) Query: 106 HPTAEHEAQEVHETDPKTPNETLSKNEKKPNEALSNAHQTNLPNKNPITPTNHANNAIKT 165 +P E Q V T+ TPN + P SN + ++ P+ P A + T Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVP----SNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 166 PTTPTHSTKEPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDQLALKATQTPTNH 225 T +S +E KT++ N Q AT +N + K ++ Sbjct: 1038 ETVAENSKQESKTVE-------------KNEQDATETTAQN------REVAKEAKSNVKA 1078 Query: 226 TLAKNDAKNTANLSSVLQSLEKKEPQNKERANPQNSEKKTPPLKEALQMNAIKRDKTLSK 285 N+ + + + Q+ E KE E+ E ++ + + K Sbjct: 1079 NTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET--------------EKTQEVPK 1124 Query: 286 KNSEKTPIHAKTQTTAPSATP--ENAPKISLK------TLPLMPLIGANPPNDNIPTPLE 337 S+ +P +++T P A P EN P +++K A + N+ P+ Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 338 KEEKTKEVSDNKEKAKETSSSAQSAQNTPASDKTSENKN 376 + + E + T+ + S +N++ Sbjct: 1185 ESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.3 bits (81), Expect = 7e-04 Identities = 12/33 (36%), Positives = 20/33 (60%) Query: 2 NDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGY 34 + + NA SG+ Q +++ SNNI++ N GY Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGY 33 Score = 33.0 bits (75), Expect = 0.004 Identities = 10/48 (20%), Positives = 20/48 (41%) Query: 557 IRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLK 604 + ++ S VN NL Q+ Y NA+ + + I+++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 40.5 bits (95), Expect = 1e-05 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 12/176 (6%) Query: 211 AASIATLSNDERELGVACVDMGGETCNLTIYSGNSIRYNKYLPVGSHHLTTDL------S 264 AA+I G VD+GG T + + S N + Y+ + +G + + Sbjct: 146 AAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRN 205 Query: 265 HMLNTPFPYAEEVKIKYGDLSFESGAETPSQSVQIPTTGSDGNESHIVPLSEIQTIMRER 324 + AE +K + G S G E V+ + +EI ++E Sbjct: 206 YGSLIGEATAERIKHEIG--SAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEP 263 Query: 325 ALETFKIIHRSIQDSGLE---EHLGGGVVLTGGMALMKGIKELARTHFTNYPVRLA 377 + +++ E + G+VLTGG AL++ + L T PV +A Sbjct: 264 LTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLM-EETGIPVVVA 318
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.8 bits (77), Expect = 0.003 Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 28/184 (15%) Query: 175 SSAYDNNPNSPSNNAINGKDGANGSNGYGVN----GNDGVNGNDGVNGNDGVNGSSGSNG 230 ++ D S + +G DG + G N G+ G + G NG+D + G G++ Sbjct: 725 TTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 231 VNESHSNNNAVGSGIDT--------------DGVLGVDGVNGSSSS---SGGS-----VG 268 + NN G D G G D + GS + GG G Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Query: 269 GYENNFTNHGSTNNNTGGYDNFNNGSSSGGSLGNGGLFPIPFGNGDTNNSNNSTNTTSPT 328 GY N+ + S + D + G SL + + F + + Sbjct: 845 GYGNDIYRYLSGYGHHIIDD--DGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLS 902 Query: 329 NGSS 332 G Sbjct: 903 IGHK 906
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 28.9 bits (64), Expect = 0.011 Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 80 IENIFANEKEDTTYIITSYLNKEELFEKKPELK 112 + N+ A+EK D ++++ L+ E FEK PE+K Sbjct: 314 VGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIK 346
>PRPHPHLPASEC#Prokaryotic zinc-dependent phospholipase C signature. Length = 398 Score = 31.1 bits (70), Expect = 0.005 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%) Query: 137 GYTTHYQILNSADFQLAQKRERLYIVGFRKDLKHPFNFPLGLANDYCFKDFLDADNEYYL 196 G TH I+ L + RK+L+ L + D+ D Y Sbjct: 35 GTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDY---DKNAY- 90 Query: 197 DVSNATFQRYLRNPYNHNRVSLENILTLENAVLDTRQSDLRLYFN 241 +Q + +P N S +N L ++ DT +S +R + Sbjct: 91 ----DLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSA 131
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 147 bits (372), Expect = 1e-45 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 24/169 (14%) Query: 22 KMDNKTVAGDVSAKTVQTAPV-TTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDF 80 + DN ++ VS + Q PAP PAP V+ K T+ + + F+F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPA-------PAPEVQTK----HFTLKSDVLFNF 225 Query: 81 DKYEIKESDQETLDEIVQKAKE---NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNAL 137 +K +K Q LD++ + V++ G TD GS YNQ L +R SV + L Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 138 VIKGVEKDMIKTISFGETKPKCVQ-----KTR----ECYRENRRVDVKL 177 + KG+ D I GE+ P K R +C +RRV++++ Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 28.2 bits (62), Expect = 0.013 Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 59 EIGHQIETLLKEAAEKRREMLAEAIQKATESYDAVIKKKENEL 101 +I QI KEA E R+ E+ +A + Y+ +++ EL Sbjct: 316 DIVEQIAQQAKEAGEVARQQAVESNAQAQQRYEDQHARRQEEL 358
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 32.2 bits (73), Expect = 0.002 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 72 EPEVQILKGLKPDFIVVVAYGKILPKEVLAIAP 104 EP +++L +KP F+V A P+ + IAP Sbjct: 86 EPNLELLTEMKPSFMVWSAGYGPSPEMLARIAP 118
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 25.9 bits (57), Expect = 0.030 Identities = 8/20 (40%), Positives = 12/20 (60%) Query: 53 VFFVFSYFYKELKMDKQKVK 72 F + + KELKM K ++K Sbjct: 203 YAFEYYQYIKELKMSKDEIK 222
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 29.6 bits (66), Expect = 0.005 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 32 MEEIENSDPNQNNPFITA--AMGIGGAAISIFFPDTKPIVDGVKPLAEKG 79 ME I NPFI+A A+GIG + K + + PL +G Sbjct: 225 MEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEG 274
>PF05844#YopD protein Length = 295 Score = 24.6 bits (53), Expect = 0.039 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 10 SVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 L+A F+ + I++ Q + +V + Q ++E+++ I + + Sbjct: 197 VALRAAGRAFESRNGALQVANTVIQSFVQMANASVQVRQGESQASAREEEVNATIGQ-SQ 255 Query: 70 KQKSD 74 KQK + Sbjct: 256 KQKVE 260
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 27.9 bits (62), Expect = 0.038 Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 5/74 (6%) Query: 79 TPIKKSATIIDLGGAKAQILHNIPKSIRQNFIAAHPMCGTEFYGPKASVKGLYENALVIL 138 P + L GA + ++R+ + Y L Sbjct: 18 APAVEGDVSFRLSGATSSSYGVFISNLRKALPYERKLYDIPLLRSTLPGSQRY-----AL 72 Query: 139 CDLEDSGTKQVELA 152 L + + + +A Sbjct: 73 IHLTNYADETISVA 86
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.7 bits (71), Expect = 0.012 Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 4 NNQNNENHENSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKERH 63 N QN N++N SE K E ER + +++ + NA K E N + ++R Sbjct: 189 NPQNLSNNKNLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAVRQRA 248 Query: 64 PNKKPNNHHKPKHAPQ 79 +K K + +P+ Sbjct: 249 KDKISIKTDKSQKSPE 264
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.9 bits (62), Expect = 0.027 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 8/59 (13%) Query: 5 NQNWKKVRLGDIAEIKRGVRITKNELDVFGKYPVVSGGVGFLGYTNNFNRYENTITIAQ 63 N + VRL D+A ++ G N + P G+ N + A+ Sbjct: 254 NSDGSVVRLKDVARVELGGE-NYNVIARINGKPAAGLGI-------KLATGANALDTAK 304
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.027 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 9/128 (7%) Query: 547 NSTATQQENTKQNQAIEQNGTTQAKEPQSKQELKKTLHPDE-------PWLDYDPKAHKC 599 N ++ T I QA P ++ DE P + Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVA 1041 Query: 600 LQERQKEEIQEKAQSNNSDEPWIEHGKRMQEKAKAHYQACLEREKAKELAKEQNNAQKEV 659 +Q+ + EK + + ++ + + ++AK++ +A + + + E Q Sbjct: 1042 ENSKQESKTVEKNEQDATET--TAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099 Query: 660 KKEMPTID 667 KE T++ Sbjct: 1100 TKETATVE 1107
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.4 bits (66), Expect = 0.020 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 106 KASIAYIRD--------YEMRYVKARDEQGNLIPLKDKEGNLKHYSNG-EVIYENEKVPQ 156 + I ++ Y RY +++ ++ +G +H G V+ + + Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMT 295 Query: 157 R 157 Sbjct: 296 V 296
>cloacin#Cloacin signature. Length = 551 Score = 37.4 bits (86), Expect = 2e-04 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 134 GKGFSGSGASGMGYASGYGDTSNNAGSNGTSANGVNGTSGNNGAKGENGSSGANGANGTS 193 G G G + G G++S + GS G GN G G +G G N ++ Sbjct: 26 GLGVGGGASDGSGWSSE--NNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83 Query: 194 GYQGVGSNPFPPIAGSGNGSSGSSNSG 220 V FP ++ G G S S Sbjct: 84 VAAPVAFG-FPALSTPGAGGLAVSISA 109 Score = 36.2 bits (83), Expect = 5e-04 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 24/101 (23%) Query: 140 SGASGMGYASGYGDTSNNAGSNGTSANGVNGTSGNNGAKGENGSSGANGANGTSGYQGVG 199 SG G G+ +G TS N +NG G G GA+ SG+ Sbjct: 2 SGGDGRGHNTGAHSTSGN----------INGGPTGLGVGG--------GASDGSGW-SSE 42 Query: 200 SNPFPPIAGSG---NGSSGSSNSGYTHFMNGGGGIGDMGGG 237 +NP+ +GSG G SG N G N GGG G G Sbjct: 43 NNPWGGGSGSGIHWGGGSGHGNGG--GNGNSGGGSGTGGNL 81 Score = 34.3 bits (78), Expect = 0.002 Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 184 SGANGANGTSGYQGVGSNPFPPIAGSGNGSSGSSNSGYTHFMNGGGGIGDMGGGFIPFPY 243 SG +G +G N G G G S SG++ N GG G + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHW----- 56 Query: 244 SPGLQNGSGANGINGTNGINGTSGANGSNSA 274 G +G G G NG +G +G N S A Sbjct: 57 --GGGSGHGNGGGNGNSGGGSGTGGNLSAVA 85
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 88.0 bits (218), Expect = 2e-22 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 29/224 (12%) Query: 121 ESFKKDELDLSSVFEIQRKNTQIAYRLAIGGLIGIVALSIAIFIMMPLKENTPYFIDFAN 180 F++ ++ ++A+ +A A +A+ + PLK PY I Sbjct: 12 AYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDR 71 Query: 181 SDKHFAVVQRADTRLDYS--EAFLRNLVGSYITARETINHIDDKIRLNETIREQSSEEVW 238 + ++ + + EA + + +Y+ RE + + + S+ Sbjct: 72 NTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYF-DAVMVMSARPEQ 130 Query: 239 KILEQLVSSKG-----SIYSNSNMDREIKIINISIYKQGKQQNIAVADIVAKVFDKGYLI 293 + + +I +N D ++I +S + VA+V+ + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRT-DVFVEIKRVSF----------LGGNVAQVYFTKESV 179 Query: 294 SEKRYRVSLIYHFKPLIQFDYSSMP-------KNPTGFIVDKYS 330 + S I++ P KNP G+ V+ Y Sbjct: 180 TGSN---STKTDAVATIKYKVDGTPSKEVDRFKNPLGYQVESYR 220
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 225 bits (575), Expect = 7e-79 Identities = 63/147 (42%), Positives = 93/147 (63%) Query: 4 IGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFT 63 IYPG+FDP+T GH+DII R LF+++ VAV + K PMFS+ ERL+ + A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 64 NVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQ 123 N + +FEGL N A++ ++RGLRV+SDFE ELQM NK+L +LET++ + + Sbjct: 62 NAQVDSFEGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTSTE 121 Query: 124 NAFISSSIVRSIIAHKGDASHLVPEEI 150 +F+SSS+V+ + G+ H VP + Sbjct: 122 YSFLSSSLVKEVARFGGNVEHFVPSHV 148
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 4e-04 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Query: 127 TVYEIAKKVAQSDTPPYNPVLFYGGTGLGKTHILNAIGNHALEKHKKVVLV 177 +Y + ++ Q+D ++ G +G GK + A+ ++ ++ V + Sbjct: 148 EIYRVLARLMQTDLT----LMITGESGTGKELVARALHDYGKRRNGPFVAI 194
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 133 bits (336), Expect = 1e-40 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 4/202 (1%) Query: 40 QSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKTEHHF--VDFLNQDKHYAII 97 + K+A+ + G+ +A + + ++ PL+ E + VD + A Sbjct: 22 RDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVDRNTGEASIAAK 81 Query: 98 QRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQN 157 D +I+ +EA+ + + YV RE + ++ V + S+ R+ K N Sbjct: 82 LHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQDRWSRFYKTDN 141 Query: 158 SIYAQSHLEREVHI-VNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTP 216 Q+ L + V I +A V + + + + Y D Sbjct: 142 PQSPQNILANRTDVFVEIKRVSFLGGNVAQVYFTKESVTGSNST-KTDAVATIKYKVDGT 200 Query: 217 DFDYASMPKNPTGFKITRYSIT 238 KNP G+++ Y Sbjct: 201 PSKEVDRFKNPLGYQVESYRAD 222
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 31.3 bits (70), Expect = 0.005 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 25/115 (21%) Query: 155 FIEDKNYYTNAFIKPQKENQENMTENAPKDAQKNNKPLKEEKEETKTPEEEVIIIGDNTN 214 I+ +N T A+I N A + N + ++EEK++ II D Sbjct: 339 LIKQENLNTTAYI--------NRVMMASNEQIINKEKIREEKQK---------IILDQAK 381 Query: 215 AMKIIKKDIQKGYKALKSSQ--RKWYCLWACSKKSKLSLMPEEIFNDKQFTYFKF 267 A+ + Q + ALK + R + A K+SK +MP EIF+D FTYF F Sbjct: 382 AL-----ETQYVHNALKRNPVPRNYNYYQAPEKRSK-HIMPSEIFDDGTFTYFGF 430
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 87.5 bits (217), Expect = 2e-21 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 19/180 (10%) Query: 7 LITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGD 66 L+TG G G ++++ LL G++V G+ + + S E L F H D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQP---GFQFHKID 60 Query: 67 MTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEK 126 + D + L A+ ++ + V+ S E P A+++ G L ILE R ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119 Query: 127 KTRFYQASTSELYGEVLETPQNENTPF-------NPRSPYAVAKMYAFYITKNYREAYNL 179 AS+S +YG N PF +P S YA K + Y Y L Sbjct: 120 --HLLYASSSSVYGL------NRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 51.3 bits (123), Expect = 1e-09 Identities = 52/346 (15%), Positives = 108/346 (31%), Gaps = 54/346 (15%) Query: 5 ILITGAYGMVGQNTALYFKKNKPDV-----------TLLTPKKSELY-----------LL 42 L+TGA G +G + + + V L + EL L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 43 DKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKA 102 D++ + + R + ++ + Y NL L + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHR-LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 103 INLASSCTYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLV 162 + +SS Y P D ++ + YA K + S G+ L Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSL----YAATKKANELMAHTYSHLYGLPATGLR 177 Query: 163 PCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLARFIA 222 +YG + + P + T + K+ ++ G +R++ D+A I Sbjct: 178 FFTVYGPWGR---------PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 223 LAYENIAQ----------MPS-------VMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKD 265 + I P+ V N+G+ + +Y + + L + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288 Query: 266 LSKPVGMQQKLMDISK-QKALKWELEIPLEQGIKETYEYYLKLLEV 310 +P + + D + + + E ++ G+K +Y +V Sbjct: 289 PLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 27.0 bits (59), Expect = 0.032 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 15/71 (21%) Query: 20 KEKGIKKKIKEEET-IKKEKIKEKIK---------EAFD-----EKLPKKPPIDIEVTFS 64 E IK+ K E+ +KEK K+ I E D + L KK P D+ +S Sbjct: 39 TESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLEIYS 98 Query: 65 KYGHGLYWIDI 75 + G +Y+ DI Sbjct: 99 ELGGEIYFTDI 109
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 148 bits (374), Expect = 8e-49 Identities = 38/140 (27%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 5 EILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQLGHH 64 L ++ +L+ K+H FHW VKG FF +H+ EE+Y+ A+ D +AER++ +G Sbjct: 15 NSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQ 74 Query: 65 PLVTLSEALKLTRVKEETKTSFHSKDIFKEILGDYKHLEKEFEELSNTAEKEGDKVTVTY 124 P+ T+ E + + + + + ++ + ++ DYK + E + + AE+ D T Sbjct: 75 PVATVKEYTEHASITDGGNET-SASEMVQALVNDYKQISSESKFVIGLAEENQDNATADL 133 Query: 125 ADDQLAKLQKSIWMLEAHLA 144 + +++K +WML ++L Sbjct: 134 FVGLIEEVEKQVWMLSSYLG 153
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.014 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 13/71 (18%) Query: 286 IVLQNFLYNAIDAIEALEESEQ-GQVKIEAFIQNEFIVFTIIDNGKEVENKSALFEPFET 344 +++Q + N I + + Q G++ ++ N + + + G + Sbjct: 258 MLVQTLVENGI--KHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------- 308 Query: 345 TKLKGNGLGLA 355 + G GL Sbjct: 309 ---ESTGTGLQ 316
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 363 bits (933), Expect = e-127 Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 26/345 (7%) Query: 19 AEKIGDIASVVGVRDNQLIGYGLVIGLNGTGDK-SGSKFTMQSISNMLESVNVKISADDI 77 +I DIAS+ RDNQLIGYGLV+GL GTGD S FT QS+ ML+++ + Sbjct: 28 TSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSPFTEQSMRAMLQNLGITTQGGQS 87 Query: 78 KSKNVAAVMITASLPPFARQGDKIDIHISSIGDAKSIQGGTLVMTPLNAVDGNIYALAQG 137 +KN+AAVM+TA+LPPFA G ++D+ +SS+GDA S++GG L+MT L+ DG IYA+AQG Sbjct: 88 NAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSLRGGNLIMTSLSGADGQIYAVAQG 147 Query: 138 AIVSGN-----------SNNLLSANIINGATIEREVSYDLFHKNAMTLSLKNPNFKNAIQ 186 A++ SA + NGA IERE+ + L L+NP+F A++ Sbjct: 148 ALIVNGFSAQGDAATLTQGVTTSARVPNGAIIERELPSKFKDSVNLVLQLRNPDFSTAVR 207 Query: 187 VQNTLNKV----FGNKVATALDPKTIQITRPERLSMVEFLALVQEIPINYSAKNKIIVDE 242 V + +N +G+ +A D + I + +P + +A ++ + + K++++E Sbjct: 208 VADVVNAFARARYGDPIAEPRDSQEIAVQKPRVADLTRLMAEIENLTVETDTPAKVVINE 267 Query: 243 KSGTIVSGVDIIVHPIVVTSQDITLKITKEP--------LSDSKNTQDLDNNMSLDTAHN 294 ++GTIV G D+ + + V+ +T+++T+ P Q + M++ Sbjct: 268 RTGTIVIGADVRISRVAVSYGTLTVQVTESPQVIQPAPFSRGQTAVQPQTDIMAMQEGSK 327 Query: 295 TLSSNGKNITIAGVVKALQKIGVSAKGMVSILQALKKSGAISAEM 339 G ++ +V L IG+ A G+++ILQ +K +GA+ AE+ Sbjct: 328 VAIVEGPDLR--TLVAGLNSIGLKADGIIAILQGIKSAGALQAEL 370
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.006 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%) Query: 30 VAIVGESGSGKSSIANLIMRLNPR----FKPHNGEILFETTNLLKESEAF 75 + I GESG+GK +A + R F N + L ESE F Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRD---LIESELF 209
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 551 bits (1420), Expect = 0.0 Identities = 179/582 (30%), Positives = 294/582 (50%), Gaps = 66/582 (11%) Query: 11 VDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALIL 70 +++ +L +I LI AG A++V ++L+ K DY LF L D I+ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWA-KTPDYR-----TLFSNLSDQDGGAIV 66 Query: 71 QHLQQNQIPYKVLKDD-TILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFD 129 L Q IPY+ I +P DKV+E R+ LA QG+PK VGFE+ D + FG + F Sbjct: 67 AQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFS 126 Query: 130 QNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLS 189 + + RA+EGEL+RTIE+L P+ A VH+A+PK S+FV ++ PSASV + L+P L Sbjct: 127 EQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALD 186 Query: 190 PTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENIL 249 QI + +L+++AV L NV +V+++G + + + + ++L QL++ + E+ + Sbjct: 187 EGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRI 244 Query: 250 ENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNN-----VVRSEQNLEEKKE 304 + +I IL+PIVG N V A+V A+ DF+ K+ T+E + PN +RS Q ++ Sbjct: 245 QRRIEAILSPIVGNGN-VHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQV 303 Query: 305 GASKKQVGGVPGVVSN-IGPVQGLKDNKEPEKYEKSQN---------------------- 341 GA GGVPG +SN P P + +QN Sbjct: 304 GAGYP--GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNE 361 Query: 342 TTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINAL 401 T+NYEV +TI K G + RL+ AVVV+ K L DG + PL+ + +K+I L Sbjct: 362 TSNYEVDRTIRHTKMNVGDIERLSVAVVVNYK---TLADG----KPLPLTADQMKQIEDL 414 Query: 402 VKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFI 461 ++A+G++ RGD + V N F+ + T E + Q + +++LV + Sbjct: 415 TREAMGFSDKRGDTLNVVNSPFSAVDN-----TGGELPFWQQQSFIDQLLAAGRWLLVLV 469 Query: 462 VLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNA 521 V +I ++K + P R +E ++ + E + E L+K L+++ +Q Sbjct: 470 VAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAVEVRLSKDEQLQQRRANQ----- 524 Query: 522 SFSEEEVRYEIILEKIRGTLKERPDEIATLFKLLIKDEISSD 563 + E++ ++IR E D + L+I+ +S+D Sbjct: 525 -----RLGAEVMSQRIR----EMSDNDPRVVALVIRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 348 bits (895), Expect = e-122 Identities = 121/338 (35%), Positives = 208/338 (61%), Gaps = 4/338 (1%) Query: 8 KQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQIGAAV 67 K+ + L+ +K AILL+ +G + + ++ ++L + I ++ +I +L ++ V Sbjct: 7 KEILDVSALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNV 66 Query: 68 LEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEARKVMDKLTKSLQTQKNFAYLGKIKP 127 L EF + + ++I GG++YARELL ++LG+++A +++ L +LQ+ + F ++ + P Sbjct: 67 LLEFKELMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQS-RPFEFVRRADP 125 Query: 128 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRV 187 + +FI EHPQTIALIL++++ A+ LS P E++ ++ R+A + SP+VV+ V Sbjct: 126 ANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREV 185 Query: 188 STVLENKLESLTSYK-IEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 246 VLE KL SL+S GG+ V EI N +K+ K + +E D +LA IK+ MF Sbjct: 186 ERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMF 245 Query: 247 TFEDIAKLDNFAIREILKVADKKDLSLALKTSTQDLTDKFLNNMSSRAAEQFVEEMQYLG 306 FEDI LD+ +I+ +L+ D ++L+ ALK+ + +K NMS RAA E+M++LG Sbjct: 246 VFEDIVLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLG 305 Query: 307 AVKIKDVDVAQRKIIEIVQSLQEKG--VIQTGEEEDVI 342 + KDV+ +Q+KI+ +++ L+E+G VI G EEDV+ Sbjct: 306 PTRRKDVEESQQKIVSLIRKLEEQGEIVISRGGEEDVL 343 Score = 31.3 bits (71), Expect = 0.006 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Query: 4 KLTPKQKAQLDELSMSEKIAILLIQVGEDTTGEILRHLDIDSITEISKQIVQLNGTDKQI 63 + P + + IA++L + IL L + T ++++I ++ T ++ Sbjct: 122 RADPANILNFIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEV 181 Query: 64 GAA---VLEEFFAIFQSNQYINTGGLEYARELLTRTLGSEEAR 103 VLE+ A S Y + GG++ E++ E Sbjct: 182 VREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKF 224
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 37.5 bits (86), Expect = 2e-05 Identities = 44/207 (21%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 48 PLEKKAIENDLIDCLLKKTDELSSHLVKLQMQFEKAQEES-KALIENAKNDGYKIGFKEG 106 E I + + L L +LQMQ A E+ +A I + G+K G++EG Sbjct: 19 QAEFVPIVEPEETIIEEAEPSLEQQLAQLQMQ---AHEQGYQAGIAEGRQQGHKQGYQEG 75 Query: 107 EEKMRNELTHSVNEEKNQLLHAITALDEKMKSSENHLMALE----KELSAIAIDIAKEVI 162 + L + E K+Q + + + + L AL+ L +A++ A++VI Sbjct: 76 ---LAQGLEQGLAEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVI 132 Query: 163 LKEVEDNSQKVALALAEELLKNVLDATDIHLKVNPLDYPYLNERLQNASKI---KLESNE 219 + ++ + + + L + L + L+V+P D +++ L + +L + Sbjct: 133 GQTPTVDNSALIKQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDP 192 Query: 220 AISKGGVMITSSNGSLDGNLMERFKTL 246 + GG +++ G LD ++ R++ L Sbjct: 193 TLHPGGCKVSADEGDLDASVATRWQEL 219
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 112 bits (282), Expect = 3e-28 Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 7/162 (4%) Query: 11 NIRNFSIIAHIDHGKSTLADCLIAECNAIS---NREMKSQVMDTMDIEKERGITIKAQSV 67 I N ++AH+D GK+TL + L+ AI+ + + + D +E++RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 68 RLNYTLKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIAL 127 + E+ +N+IDTPGH+DF EV RSL +GA+L++ A GV+AQT + Sbjct: 62 SFQW----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 128 DNNLEILPVINKIDLPNANVLEVKQDIEDTIGIDCSNANEVS 169 + + INKID ++ V QDI++ + + +V Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 159 Score = 82.6 bits (204), Expect = 1e-18 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 169 SAKAKLGIKDLLEKIITTIPAPSGDPNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQ 228 SAK +GI +L+E I + + + L ++ + LA +R+ G ++ Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 229 EILVMGTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIV---SLGLKSVTDIAVGDTLTDA 285 + + K + +Y + GEI I+ L L SV +GDT Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV----LGDTKLL- 333 Query: 286 KNPTSKPIEGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFEPESSVALGFG 345 P + IE P + + P + + E L +ALL++ +D L + +S+ Sbjct: 334 --PQRERIEN---PLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---E 385 Query: 346 FRVGFLGLLHMEVIKERLEREFSLNLIATAPTVVY 380 + FLG + MEV L+ ++ + + PTV+Y Sbjct: 386 IILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 31.0 bits (70), Expect = 0.015 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 407 IKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDK 466 + EP++ I P E+L + L + V+L+ +P+ I ++ Sbjct: 535 LLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCI-QEYRSD 592 Query: 467 LKSCTKGYASFDYEP 481 L T G + E Sbjct: 593 LTFFTNGRSVCLTEL 607
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.009 Identities = 9/40 (22%), Positives = 16/40 (40%) Query: 3 NGYYAATGAMATQFNRLDLTSNNLANLNTNGFKRDDAITG 42 + A + L+ SNN+++ N G+ R I Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMA 41
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 39.9 bits (93), Expect = 1e-05 Identities = 58/315 (18%), Positives = 104/315 (33%), Gaps = 67/315 (21%) Query: 37 APYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMA 96 P A +F T + +AF++ G+ +GKL D+ G K +++ II+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSI------GTAVYGKLSDQLGIKRLLLFGIIINC 90 Query: 97 LGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVGGE------YGVVATYLSELGKNGKK 150 GS + VG F L++AR +QG G VVA Y+ + + Sbjct: 91 FGSVIGF-------VGHSFFSLLIMARFIQG--AGAAAFPALVMVVVARYIPKENRGKAF 141 Query: 151 GFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIM 210 G GS + +G + I I+ W YL + I + FL ++ Sbjct: 142 GLIGS---IVAMGEGVGPAIGGMIAHYIH---------WSYLLLIPMITIITVPFLMKLL 189 Query: 211 EETMDSKTTSKTTIKEETQRGSLKELLNHKKALM-------IVFGLTMGGSLCFYTFTVY 263 + + +K + K ++ + T + Sbjct: 190 K-----------------KEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS 232 Query: 264 LKIFLTNSSSFSPK-------ESSFIMLLALSYFIFLQPLCG---MLADKIKRTQMLMVF 313 IF+ + + ++ M+ L I + G M+ +K L Sbjct: 233 FLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA 292 Query: 314 AITGLIVTPVVFYGI 328 I +I+ P I Sbjct: 293 EIGSVIIFPGTMSVI 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.035 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 13/209 (6%) Query: 163 QAFNLDFTLKKEGFENTPLDAQKKETKNDKDKENPKENPIDESHKTPNEESFLAIPTPYN 222 Q +L+ +L + + + D NP+ +++ T N + I Sbjct: 949 QRDHLNVSLVGNTVDLGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVP 1008 Query: 223 TTLNNSEPQEGLVQISPHPPTHYTIYPKRNRFDDLTNPTNPPLKEPKQETKEREPTLKKE 282 + +N+E + V +P PP + T N + E E++ T E Sbjct: 1009 SVPSNNE-EIARVDEAPVPPPAPATPSETT----ETVAENSKQESKTVEKNEQDAT---E 1060 Query: 283 TPTTLKPIMPISAPNTENDNKTENHKTPNHPIKEDALQENPQKENQKENIEEKENLKEEE 342 T + + + N + + +T N + + + + +E++E K E Sbjct: 1061 TTAQNREVAKEAKSNVKANTQT-NEVAQ---SGSETKETQTTETKETATVEKEEKAKVE- 1115 Query: 343 KRETQNAPNFSPITPTSAKKPVMVKELSE 371 +TQ P + ++ V+ +E Sbjct: 1116 TEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 26.9 bits (59), Expect = 0.045 Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 141 MVNILAEMKAFQEAQKNNPNNPNNPIN 167 + + ++ + Q NNP+NP+NP N Sbjct: 274 LKQNIEDIHFANDDQPNNPDNPDNPNN 300
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.7 bits (74), Expect = 0.003 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 224 ENSVTIKRYFREVLRKMI---LCRPEDLNLRQKRILMLVGPTGVGKTTTLAKLAARY 277 + RY + V + ++ + R + + ++L G G+GK+T + L Sbjct: 564 DYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 431 bits (1109), Expect = e-154 Identities = 122/342 (35%), Positives = 207/342 (60%), Gaps = 3/342 (0%) Query: 1 MADILSQEEIDALLEVVDENVDIQNVQKKDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIH 60 M ++LSQ+EID LL + D + I R +TLYDF+RP++ SKEQ+R+ +H Sbjct: 1 MTEVLSQDEIDQLLTAISSG-DASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMH 59 Query: 61 DKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEI 120 + AR ++ +S+ +RS+V + + SVDQ+TY EF+ S+P+P++ V +M P+ G VLE+ Sbjct: 60 ETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEV 119 Query: 121 NPSIAFPMIDRLLGGKGSAYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVEMYPTID 180 +PSI F +IDRL GG G A R+ +DIE ++++ ++ +++ ++E W+ V+++ P + Sbjct: 120 DPSITFSIIDRLFGGTGQAAKVQRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLG 179 Query: 181 AKESSANVVQIVAQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGSRDFMLSET 240 E++ QIV +E+ ++V LE +G GMMN C P I+IE I+SK+ S+ + S Sbjct: 180 QIETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVR 239 Query: 241 NSKKSRNKE-LQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKI-ANDEVSVYV 298 S ++ L+ LS V +D++ +G++ LS++++L L VGD IRL+ D + + Sbjct: 240 RSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSI 299 Query: 299 HKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILEMLEEQ 340 +K++L G G + QI E + S + E L EE+ Sbjct: 300 GNRKKFLCQPGVVGKKIAAQILERIESTSQEDFEELSADEEE 341
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 112 bits (282), Expect = 3e-33 Identities = 42/124 (33%), Positives = 77/124 (62%), Gaps = 1/124 (0%) Query: 161 TEAFEGQFEKTHKEEKEETTKSATEET-KTHDASLENIEIRNISMLLDVKLNVKVRIGQK 219 T A + + E+K TTKSA + + + +++I +++D+ + + V +G+ Sbjct: 12 TGALDDLWADALNEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRT 71 Query: 220 KMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITDIGTKKER 279 +M +K+++ + GSVV LD L +PL+IL++ +IA+GEVV+V +G++ITDI T ER Sbjct: 72 RMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSER 131 Query: 280 LEQL 283 + +L Sbjct: 132 MRRL 135
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.5 bits (69), Expect = 0.003 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 88 LQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIFSAFFCSSLFLSSPLLGVIALVALS 147 L Y F L+L+ +LPFS S + +L PLL V AL+A++ Sbjct: 45 LSDYYFEHFSKLMLIPAEQSYLPFSQ----ALSYVVDNVLLEFFYLCFPLLTVAALMAIA 100 Query: 148 SSLLVR 153 S ++ Sbjct: 101 SHVVQY 106
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 49.2 bits (117), Expect = 5e-09 Identities = 24/57 (42%), Positives = 28/57 (49%) Query: 83 APKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVE 139 P P +P P P P P IEKPKP+PKPKPKP K + +K VE Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVE 118 Score = 45.0 bits (106), Expect = 1e-07 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 84 PKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEE 143 P + P +P P P P P P E P KPKPKP+PK K V+KV+E Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP--------KPVKKVQE 108 Query: 144 KKVVEEKKEE 153 + + K E Sbjct: 109 QPKRDVKPVE 118 Score = 39.2 bits (91), Expect = 9e-06 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 34/214 (15%) Query: 98 PTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVV 157 P PP +P +P EP+P+P+P P+ P K+ V EK + K + K V Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-------KEAPVVIEKPKPKPKPKPKPVK 104 Query: 158 EQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDELYGEEFGD 217 KV+++ + KPV E P N T + Sbjct: 105 --KVQEQPKRDVKPV--------------ESRPASPFENTAPARLTSSTATAATSKPVTS 148 Query: 218 LGTAEKDFIRNNLRDIGRITQKYLEYPQVAAYLGQDGTNAVEFYLHPNGDITDLKIIIGS 277 + + + RN + YP A L +G V+F + P+G + +++I+ Sbjct: 149 VASGPRALSRNQPQ-----------YPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAK 197 Query: 278 EYKMLDDNTLKTIQIAYKDYPRPKTKTLIRIRVR 311 M + ++ + +P + ++ I + Sbjct: 198 PANMFEREVKNAMRRWRYEPGKPGSGIVVNILFK 231 Score = 39.2 bits (91), Expect = 9e-06 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 87 TLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKV 146 T+ P P PP P E P+PEP P+P E K K K + KKV Sbjct: 48 TMVTPADLEPPQAVQPPPEPVVEPE-PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 106 Query: 147 VEEKKEEKKVVE 158 E+ K + K VE Sbjct: 107 QEQPKRDVKPVE 118 Score = 38.0 bits (88), Expect = 2e-05 Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 74 QDPNKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKK 127 Q +P P P P PKP KPKP+P K + +PK+ Sbjct: 59 QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Score = 32.7 bits (74), Expect = 0.001 Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 74 QDPNKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPKKPN 129 +P P+P P++ P P P PKP K + +PK +P + Sbjct: 65 PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 120 Score = 31.1 bits (70), Expect = 0.005 Identities = 12/52 (23%), Positives = 16/52 (30%) Query: 75 DPNKNNPGAPKPTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKPKPEPK 126 +P P + P P P P K E+PK + KP Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPAS 123
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 2e-30 Identities = 25/77 (32%), Positives = 47/77 (61%) Query: 34 LICDYKNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKG 93 + D ++D+ + + ELG T++ + ++LR +GSV+ L AGE +D +NG +I +G Sbjct: 50 AMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQG 109 Query: 94 EVMVFERNLAIRLNEIL 110 EV+V +R+ +I+ Sbjct: 110 EVVVVADKYGVRITDII 126
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 29.4 bits (65), Expect = 0.009 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Query: 23 NQTTELHHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALASLE--EVKEII 80 N+ E+ K E A ++ + T QI + K P+ +L L E +V+++ Sbjct: 132 NKVVEMSKKAVQETQKAVSVAGEATFLIEKQI---MLNKSPNNKELELTKEEFAKVEQVK 188 Query: 81 QSVSYSNNKSKHLINMAQKVVRDFKGVIPSTQKELMSLDGVGQKTANVV 129 +++ S + AQKV+ G+ PS + ++++ V + +NVV Sbjct: 189 ETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVV 237
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.014 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 143 NAAKNGEEHSNEGLITVNKTGQDIESLYEKMQNATSLADSLNQRS--NEITQVISLIDDI 200 N + ++ N+ L T+NK +D+ S E ++ ++ N + +SL+ D+ Sbjct: 47 NKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFVGSMSLMSDV 106 Query: 201 AEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKA 242 A+ T + + A I A +G G V + +K ++TQKA Sbjct: 107 AKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKA 148
>FLAGELLIN#Flagellin signature. Length = 507 Score = 244 bits (624), Expect = 6e-77 Identities = 126/518 (24%), Positives = 209/518 (40%), Gaps = 22/518 (4%) Query: 2 AFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSL 61 A +NTN ++ +Q++L +++ERLSSGLRIN A DDA+G +A+ S L Sbjct: 1 AQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGL 60 Query: 62 GQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQ 121 QA N NDG+ I Q + A++E L V+ + QA + K+IQ +I + ++ Sbjct: 61 TQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLE 120 Query: 122 GLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRI-ATGALI 180 +D + N T +NG +LS + QVGA ++I + +G G Sbjct: 121 EIDRVSNQTQFNGVKVLSQDN-QMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKE 179 Query: 181 TASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTS 240 GD+ +FK V G + + + K +G V ++ V A +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 DVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLR 300 D N + K A A+ + + + + Sbjct: 240 DAE-----------NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID 288 Query: 301 SIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINV------VS 354 + G K + NG V S + +N + Sbjct: 289 TKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 355 ASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSL---G 411 ++S L ++ TVN + T N + + +G + S Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINE 408 Query: 412 SGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRD 471 + + +SA+ +D VRS LG++QN+ S + N+ T N+ +A S+I D Sbjct: 409 DAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIED 468 Query: 472 VDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLL 509 D+A E +N +K IL Q+G+ ++QAN V QN+L LL Sbjct: 469 ADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.032 Identities = 14/113 (12%), Positives = 41/113 (36%), Gaps = 16/113 (14%) Query: 203 LARMIALQKKLEQIQTDIKRVTKLYDKGLTTIDDL-----QSLKAQGNLSEY--DILDMQ 255 LAR+ + ++ + + L K + + ++A L Y + ++ Sbjct: 220 LARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE 279 Query: 256 FALEQNRLTLEYLTNLNVKNLKKTTIDVPNLQLRE-RKDLVSLREQISALKYQ 307 + + + +T K +D +LR+ ++ L +++ + + Sbjct: 280 SEILSAKEEYQLVTQ----LFKNEILD----KLRQTTDNIGLLTLELAKNEER 324
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 51.8 bits (124), Expect = 5e-10 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 27 NVKAIQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQ 86 K I+ IV I V EG V+KGDVLL L +A + T+ L+ A+ + Sbjct: 95 RSKEIKPI-----ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149 Query: 87 YQRYSKIGGAVDKNTLEGYEFT 108 RY + +++ N L + Sbjct: 150 QTRYQILSRSIELNKLPELKLP 171 Score = 32.1 bits (73), Expect = 0.002 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 13/115 (11%) Query: 70 QAQSDSTEQQLIFAKKQYQR--YSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTI 127 +++ S +++ + ++ K+ D L L + A + ++ Sbjct: 279 ESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL---------LTLELAKNEERQQASV 329 Query: 128 LRAPFDGVVASKNIQVGEGVSANSTVLLRLVSHARKLVIE--FDSKYINAVKVGD 180 +RAP V + GV + L+ +V L + +K I + VG Sbjct: 330 IRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQ 384
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 898 bits (2323), Expect = 0.0 Identities = 287/1040 (27%), Positives = 518/1040 (49%), Gaps = 42/1040 (4%) Query: 1 MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESK 60 M I RPI + A+ ++ G + +L VA +P I P V V+ YPGA A+ ++ Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTDKIEEAVMGIDGIKKVTSTSSKNVSIVV-IEFELEKPNEEALNDVVNKISSVR-FDDS 118 VT IE+ + GID + ++STS S+ + + F+ + A V NK+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 119 NIKKPSVNKFDTDSQAIISLFVSSSSVPAT--TLNDYAKNTIKPMLQKINGVGGVQLNGF 176 +++ ++ + S ++ S + T ++DY + +K L ++NGVG VQL G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 177 RERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNS------QRELSILVNAN 230 + +RI+ D L+NKY LT D+ + LK +N +I G++ + Q SI+ Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 231 SYSVADVEKIQV-----GNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANE 285 + + K+ + G+ VRL D+A++E+G E N A KP L I+ GAN Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 286 IEIVDRVYEALKRIQAISP-SYEIRPFLDTTTFIRSSIEDVKFDLILGAILAVLVVFAFL 344 ++ + L +Q P ++ DTT F++ SI +V L +L LV++ FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 345 RSGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHK- 403 ++ TL+ I++P+ ++GTFA++ G+S+N LTM + LAIG+++DDAIVV+EN+ + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 404 KLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIA 463 +E + ++A+ + + +I ALV I+ +L +VF+P+ G G ++ F IT+ A+A Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 464 LSYVVVVTIIPMVSSVVVNPKHS-------RFYVWSEPFFKALESRYTRLLQWVLNHKLI 516 LS +V + + P + + ++ P + F+ W F + YT + +L Sbjct: 480 LSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539 Query: 517 IFIAVVLVFVGSLFVASKLGMEFMLKEDRGRFLVWLKAKPGVSIDY----MTQKSKIFQK 572 + L+ G + + +L F+ +ED+G FL ++ G + + + Q + + K Sbjct: 540 YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599 Query: 573 AIEKHDEVEFTTLQVGY-GTTQNPFKAKIFVQLKPLKERKKEHKLGQFELMSALKKELKS 631 + + E FT + G QN FV LKP +ER + ++ K EL Sbjct: 600 NEKANVESVFTVNGFSFSGQAQNA--GMAFVSLKPWEERNG-DENSAEAVIHRAKMELGK 656 Query: 632 MPEAKDLDSINLSEVALIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKV 691 + + + N+ + G ++ F + + D + + L + + + Sbjct: 657 IRDGF-VIPFNMPAIV---ELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASL 712 Query: 692 ESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMI 751 S + E Q +L++ ++ A GVS I +S+A G + + F + G+ + Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGG-TYVNDFIDRGRVKKLY 771 Query: 752 IRVPDDKRVSVEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPN 811 ++ R+ ED+ +L VR+ +++ A + RYN S+ + E Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA- 830 Query: 812 RNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVALATAFVLIYMILA 871 G S G+ + + +N L G Y +TG + + S + +A +FV++++ LA Sbjct: 831 -APGTSSGDAMALM-ENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 872 ALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVA 931 ALYES P +M+ +PL G A L +Q ++ M+GL+ IG+ KNA L+++ A Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 932 NE-ERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSG 990 + K+G + EA L A + RLRPILMT++A + G+LPLA+++G G+ ++ +GI + G Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 991 GLMISMVLSLLIVPVFYRLL 1010 G++ + +L++ VPVF+ ++ Sbjct: 1009 GMVSATLLAIFFVPVFFVVI 1028
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 273 bits (699), Expect = 4e-76 Identities = 106/397 (26%), Positives = 181/397 (45%), Gaps = 14/397 (3%) Query: 2804 AGNNSILWLNELFAAKGGNPLFAPYYLQDNPTEHIVTLMKDITSALGMLSNSNLKNNSTD 2863 +G L L + +A + I + T+ L +++ K + Sbjct: 904 SGAQGRDLLQTLLI-DSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQ 962 Query: 2864 VLQLNTYTQQMSRLAKLSNFASFDSTDFSERLSSLKNQRFADATPNAMDVILKYSQRDKL 2923 L L+ SRL LS + F++RL +LK+QRFA +A +V+ +++ + + Sbjct: 963 TLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFAS-LESAAEVLYQFAPKYEK 1021 Query: 2924 KNNLWATGVGGVSFVENGTGTLYGVNVGYDRFVRG---VIVGGYAAYGYSGFYER--ITN 2978 N+WA +GG S G +LYG + G D ++ G IVGG+ +YGYS F + N Sbjct: 1022 PTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLN 1081 Query: 2979 SKSDNVDVGLYARAFIKKSELTFSVNETWGANKTQISSNDTLLSMINQSYKYSTWTTNAK 3038 S ++N + G+Y+R F + E F G++++ ++ LL +NQSY Y ++ + Sbjct: 1082 SGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATR 1141 Query: 3039 VNYGYDFMFKNKSIILKPQIGLRYYYIGMSGLEGVMNNALYNQFKANADPSKKSVLTIDF 3098 +YGYDF F +++LKP +G+ Y ++G + + + S + + Sbjct: 1142 ASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKS----NSNQKVALKNGASSQHLFNASA 1197 Query: 3099 ALENRHYFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIGNNTLSYRKGDLYNTFANITTGG 3158 +E R+Y+ SYFY GV ++ N V + R NT A + GG Sbjct: 1198 NVEARYYYGDTSYFYMNAGVLQEFA-NFGSSNAVSLNTFKVNATRNP--LNTHARVMMGG 1254 Query: 3159 EVRLFKSFYANAGVGARFGLDYKMIDIIGNIGMRLAF 3195 E++L K + N G L + N+GMR +F Sbjct: 1255 ELKLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291 Score = 35.8 bits (82), Expect = 0.004 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 5/100 (5%) Query: 703 SYTFDGANNTFNEDKFNGGSFNFNHAEQTDAFNNNSFNGGSFSFNAKQVDFNHNSFNGGV 762 SY+ + E FN + ++A Q +N + G+ + N + G Sbjct: 272 SYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLW-QSAGLNIIAPPEGG 330 Query: 763 FNF---NNTPKASFTNDTFNVNNQFKING-TQTDFTFNKG 798 + + + N + + N TQ N Sbjct: 331 YKDKPNDKPSNTTQNNAKNDKQESSQNNSNTQVINPPNSA 370 Score = 33.9 bits (77), Expect = 0.013 Identities = 58/297 (19%), Positives = 97/297 (32%), Gaps = 32/297 (10%) Query: 251 SNGATTISGV-TFNNNGALTYKGGNGIGGGITFINSNINHYKLNLNANSVTFNNSTLGSM 309 + G T+ + N N T + G G +T ++++ K +N ++ S L Sbjct: 386 AGGKNTVVNINRINTNADGTIRVG-GFKASLTTNAAHLHIGKGGINLSNQASGRSLLVEN 444 Query: 310 PNGNANTIGNAYILNANNITFNNLTFNGGWFVFMRPDSKIDFQGTTTINNPTSPFLNMTS 369 GN G L NN G + +F+ T N T+ F N S Sbjct: 445 LTGNITVDGP---LRVNNQV-GGYALAGS-------SANFEFKAGTDTKNGTATFNNDIS 493 Query: 370 KVTINPNAIFNIQNYTPSIGSAYTLFSMKNGSIAYNDVNNLWNIIRLKNTQATKDADKNH 429 + I + F+ + ++ V N NI +L T +T A KN Sbjct: 494 LGRFVNLKVDAHTANFKGIDTGNGGFNT----LDFSGVTNKVNINKL-ITASTNVAVKN- 547 Query: 430 TSSNNNTHTYYVTYNLGGTLYNFRQIFSPDSIVLQSVYYGANNIYYTNSVNIHDNVFNLK 489 + N ++G + I S I + G +IY K Sbjct: 548 -FNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGG--------VKFK 598 Query: 490 NINDDRADAIFYLNGLNTWNYTNARFAQTYDGKNSALVFNATTPWANGSIPKSNSTV 546 + +Y WNY +AR + + N +PW + +N T+ Sbjct: 599 GGEKLVINDFYY----APWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTL 651
>LCRVANTIGEN#Low calcium response V antigen signature. Length = 326 Score = 29.7 bits (66), Expect = 0.002 Identities = 15/33 (45%), Positives = 20/33 (60%) Query: 16 KRKRLLTELAELEAEIKVGSERRSGFNVSLSPS 48 R +L ELAEL AE+K+ S ++ N LS S Sbjct: 149 ARSKLREELAELTAELKIYSVIQAEINKHLSSS 181
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 34.2 bits (78), Expect = 7e-04 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 11/109 (10%) Query: 121 IEKMLIGYGSLGASSFTAGAVLGGGLAASGLAGAAVLGGL--VAGPALAILGAISTDEME 178 ++K+L Y G +G L +G +L G AL+ ++ DE+ Sbjct: 114 LDKLLQKYQKAGNILGGGAENIGDNLGKAG----GILSTFQNFLGTALS---SMKIDELI 166 Query: 179 KKRDDAKAY--LSQVEAAVKKADAMIDNIQAVRKVVDLFTEQITKLDAL 225 KK+ +A+++ + ++D + ++ V+ F++Q+ L ++ Sbjct: 167 KKQKSGGNVSSSELAKASIELINQLVDTVASLNNNVNSFSQQLNTLGSV 215
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.5 bits (66), Expect = 0.034 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%) Query: 353 LTRYLSGKIDKTELLKQLGKANTTLVSSGAMAVAGQA 389 L Y KID ++ K T +V+SGA+ VA A Sbjct: 464 LGSYTYAKIDNKDV-----KGYTGMVASGALGVAINA 495
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 367 bits (943), Expect = e-129 Identities = 118/359 (32%), Positives = 194/359 (54%), Gaps = 14/359 (3%) Query: 4 EEKTELPSTKKIQKAREEGNVPKSMEVVGFLGLLAGLMSIFVFFIWWVDGFSEMYRHVLK 63 EKTE P+ KKI+ AR++G V KS EVV ++A + ++ + FS++ + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 64 DFSLDFSKESVQELFNQLAKDTFLLLLPVLIILMVVAFLSNVLQFGWLFAPKVIEPKFSK 123 L FS +++ + + + + F L P+L + ++A S+V+Q+G+L + + I+P K Sbjct: 63 QSYLPFS-QALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 124 INPINGVKNLFSLKKLLDGSLITLKVFLAFFLGFFIFSLFLGEL------NHAALLNLQG 177 INPI G K +FS+K L++ LKV L L + I L L + L G Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 178 QLLWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQEVKDEYKQQEGNPEIK 237 Q+L + L +I ++ F+ V++ D + QY LKM+K E+K EYK+ EG+PEIK Sbjct: 182 QIL----RQLMVICTVGFV--VISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIK 235 Query: 238 AKIRQMMVKNATNKMMQEIPKANVVVTNPTHYAVALKFD-EEHPVPVVVAKGTDYLAIRI 296 +K RQ + + M + + +++VVV NPTH A+ + + E P+P+V K TD + Sbjct: 236 SKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTV 295 Query: 297 KGIAREHDIEIIENKTLARELYRDVKLNATIPEELFEAVAIVFAQVAKLEQERQKQKII 355 + IA E + I++ LAR LY D ++ IP E EA A V + + E+Q +++ Sbjct: 296 RKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML 354
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.6 bits (66), Expect = 0.021 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 135 QTPKPTPKPIKKEAKKTKEKTPTKHAHSKHAHSPLNERSAKKEIPKKEIPKKEIPKKEIP 194 Q P + E + E + K + K PK +E P Sbjct: 62 QPPPEPVVEPEPEPEPIPEPPKEAPVVIE-----------KPKPKPKPKPKPVKKVQEQP 110 Query: 195 KKEIPKKEAENES 207 K+++ E+ S Sbjct: 111 KRDVKPVESRPAS 123
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 30.1 bits (67), Expect = 0.015 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 309 EEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALS 359 +E L+ S++ LD+ + Q+VL + G+NP+ K ++L +V+KA+S Sbjct: 188 KETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLA----KKDVAKAIS 234
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 2021 bits (5238), Expect = 0.0 Identities = 1152/1292 (89%), Positives = 1218/1292 (94%), Gaps = 5/1292 (0%) Query: 1 MEIQQTHRKMNRPLVSLVLAGALISAIPQESHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 MEIQQTHRK+NRPLVSL L GAL+S PQ+SHAAFFTTVIIPAIVGGIATGAAVGTVSGL Sbjct: 1 MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL 60 Query: 61 LSWGLKQAEEANKTPDKPDKVWRIQAGRGFNNFPHKQYDLYQSLLSSKIDGGWDWGNAAR 120 L WGLKQAEEANKTPDKPDKVWRIQAG+GFN FP+K+YDLY+SLLSSKIDGGWDWGNAAR Sbjct: 61 LGWGLKQAEEANKTPDKPDKVWRIQAGKGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR 120 Query: 121 HYWVKGGQWNKLEVDMKDAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 HYWVK GQWNKLEVDM++AVGTY LSGL NFTGGDLDVNMQKATLRLGQFNGNSFTSYKD Sbjct: 121 HYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSYKD 180 Query: 181 SADRTTRVNFNAKNISIENFVEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYD 240 SADRTTRV+FNAKNI I+NF+EINNRVGSGAGRKASSTVLTLQASEGITS +NAEISLYD Sbjct: 181 SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYD 240 Query: 241 GATLNLASNSVKLNGNVWMGRLQYVGAYLAPSYSTINTSKVQGEVDFNHLTVGDQNAAQA 300 GATLNLASNSVKL GNVWMGRLQYVGAYLAPSYSTINTSKV GEV+FNHLTVGD NAAQA Sbjct: 241 GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQA 300 Query: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNNTPS---QSGTKNDKQEISQNNNS 357 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPN+ PS Q+ KNDKQE SQNN S Sbjct: 301 GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNDKPSNTTQNNAKNDKQESSQNN-S 359 Query: 358 NTEVINPPNNTQKTETEPTQVIDGPFAGGKDTVVNIDRINTKADGTIRVGGFKASLTTNA 417 NT+VINPPN+ QKTE +PTQVIDGPFAGGK+TVVNI+RINT ADGTIRVGGFKASLTTNA Sbjct: 360 NTQVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGFKASLTTNA 419 Query: 418 AHLNIGKGGVNLSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGV 477 AHL+IGKGG+NLSNQASGR+LLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAG Sbjct: 420 AHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGT 479 Query: 478 DTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTGKVNINKLITA 537 DTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVT KVNINKLITA Sbjct: 480 DTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITA 539 Query: 538 STNVAVKNFNINELVVKTNGISVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVKFKG 597 STNVAVKNFNINELVVKTNG+SVGEYTHFSEDIGSQSRINTVRLETGTRSI+SGGVKFKG Sbjct: 540 STNVAVKNFNINELVVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKG 599 Query: 598 GEKLVIDEFYYSPWNYFDARNVKNVEITRKFASSTPENPWGTSKLMFNNLTLGQNAVMDY 657 GEKLVI++FYY+PWNYFDARN+KNVEIT K A +PWGT+KLMFNNLTLGQNAVMDY Sbjct: 600 GEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTAKLMFNNLTLGQNAVMDY 659 Query: 658 SQFSNLTIQGDFINNQGTINYLVRGGKVATLSVGNAAAMMFNNDIDSATGFYKPLIKINS 717 SQFSNLTIQGDF+NNQGTINYLVRGG+VATL+VGNAAAM F+N++DSATGFY+PL+KINS Sbjct: 660 SQFSNLTIQGDFVNNQGTINYLVRGGQVATLNVGNAAAMFFSNNVDSATGFYQPLMKINS 719 Query: 718 AQDLIKNTEHVLLKAKIIGYGNVSTGTNSISNVNLEEQFKERLALYNNNNRMDTCVVRNE 777 AQDLIKN EHVLLKAKIIGYGNVS GT+SI+NVNL EQFKERLALYNNNNRMD CVVRN Sbjct: 720 AQDLIKNKEHVLLKAKIIGYGNVSAGTDSIANVNLIEQFKERLALYNNNNRMDICVVRNT 779 Query: 778 NDIKACGMAIGNQSMVNNPENYKYLIGKAWRNIGISKTANGSKISVYYLGNSTPTENGGN 837 +DIKACG AIGNQSMVNNPENYKYL GKAW+NIGISKTANGSKISV+YLGNSTPTENGGN Sbjct: 780 DDIKACGTAIGNQSMVNNPENYKYLEGKAWKNIGISKTANGSKISVHYLGNSTPTENGGN 839 Query: 838 TTNLPTNTTNNARSANYALVKNAPFA-HSATPNLVAINQHDFGTIESVFELANRSKDIDT 896 TTNLPTNTTN R A+YAL+KNAPFA +SATPNLVAINQHDFGTIESVFELANRS DIDT Sbjct: 840 TTNLPTNTTNKVRFASYALIKNAPFARYSATPNLVAINQHDFGTIESVFELANRSNDIDT 899 Query: 897 LYTHSGTKGRDLLQTLLIDSHDAGYARQMIDNTSTGEITKQLNAATDALNNVASLEHKQS 956 LY +SG +GRDLLQTLLIDSHDAGYAR MID TS EITKQLN AT LNN+ASLEHK S Sbjct: 900 LYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNTATTTLNNIASLEHKTS 959 Query: 957 GLQTLSLSNAMILNSRLVNLSRKHTNHIDSFAQRLQALKGQRFASLESAAEVLYQFAPKY 1016 GLQTLSLSNAMILNSRLVNLSR+HTNHIDSFA+RLQALK QRFASLESAAEVLYQFAPKY Sbjct: 960 GLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAPKY 1019 Query: 1017 EKPTNVWANAIGGASLNSGSNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANS 1076 EKPTNVWANAIGG SLNSG NASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANS Sbjct: 1020 EKPTNVWANAIGGTSLNSGGNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNQANS 1079 Query: 1077 LNSGANNANFGVYSRFFANQHEFDFEAQGALGSDQSSLNFKSALLQDLNQSYNYLAYSAT 1136 LNSGANN NFGVYSR FANQHEFDFEAQGALGSDQSSLNFKSALL+DLNQSYNYLAYSA Sbjct: 1080 LNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAA 1139 Query: 1137 ARASYGYDFAFFRNALVLKPSVGVGYNHLGSTNFKSNSQSQVALKNGASSQHLFNANANV 1196 RASYGYDFAFFRNALVLKPSVGV YNHLGSTNFKSNS +VALKNGASSQHLFNA+ANV Sbjct: 1140 TRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALKNGASSQHLFNASANV 1199 Query: 1197 EARYYYGDTSYFYLHAGVLQEFAHFGSNDVASLNTFKINAARSPLSTYARAMMGGELRLA 1256 EARYYYGDTSYFY++AGVLQEFA+FGS++ SLNTFK+NA R+PL+T+AR MMGGEL+LA Sbjct: 1200 EARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNATRNPLNTHARVMMGGELKLA 1259 Query: 1257 KEVFLNLGVVYLHNLISNASHFASNLGMRYSF 1288 KEVFLNLG VYLHNLISN HFASNLGMRYSF Sbjct: 1260 KEVFLNLGFVYLHNLISNIGHFASNLGMRYSF 1291
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.6 bits (219), Expect = 7e-23 Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 10/233 (4%) Query: 14 KVAVITGASSGIGLECALMLLDQGYKVYALSRRATLCVALNHALC------ECVDIDVSD 67 K+A ITGA+ GIG A L QG + A+ + +L E DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 68 SNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCL 127 S A+ E+ I + D+L+N AG G + EE + FSVN + + Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 128 PLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPG 187 + ++ I + S V + Y++SK A ++ L LEL +N++ ++ PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 188 PVKSNWEKTAFENDERKDSVYTLEVNAAKSFYSGV-YQKALNAKEVAQKIVFL 239 +++ + + + ++ + V + ++F +G+ +K ++A ++FL Sbjct: 189 STETDMQWSLWADENGAEQVIK---GSLETFKTGIPLKKLAKPSDIADAVLFL 238
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.6 bits (121), Expect = 6e-09 Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 6/193 (3%) Query: 37 LSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSAKVERKRLLLFLFALFILSHILS 96 L DIA F A+ + TA+ S+G+ LS ++ KRLLLF + ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 ALAWNFWVLLI-SRIGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGL 155 + +F+ LLI +R + F ++ +V R P+ + +A GL+ ++ +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 156 PLGRIIGQMLDWRSTFGVIGGVATLIALLMWKLLPPLPSRNAGTLASVPILMKRPLLMGI 215 +G +I + W ++ ++ + T+I + L R G I++ + +GI Sbjct: 157 AIGGMIAHYIHW--SYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIIL---MSVGI 211 Query: 216 YLLVIMVISGHFT 228 ++ S + Sbjct: 212 VFFMLFTTSYSIS 224
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.0 bits (85), Expect = 1e-04 Identities = 28/191 (14%), Positives = 69/191 (36%), Gaps = 15/191 (7%) Query: 88 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEK-----QKTSNIET 142 + EVA++ E + + K + ++EK K E EK + TS + Sbjct: 1078 ANTQTNEVAQSGSETKETQTTETK------ETATVEKEEKAKVETEKTQEVPKVTSQVSP 1131 Query: 143 NNQIKVEQEKQKTNNTQKDLIKKAEQNCQENHNQFFIKKVGIKGGAIEVEAECKTPKPTK 202 + + Q + D ++ + + ++ + + + ++ Sbjct: 1132 KQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191 Query: 203 TNQTPIQPKH-LPNSKQPRSQRGSKARELIAYLQKELESLPYSQKAIAKQVDFYKPSSIA 261 N P++ P + QP S + + ++ + S+P++ + + S++A Sbjct: 1192 GNSVVENPENTTPATTQPTVNSESSNKPKNRH-RRSVRSVPHNVEPATTSSN--DRSTVA 1248 Query: 262 HLELDPRDFNA 272 +L + NA Sbjct: 1249 LCDLTSTNTNA 1259
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 31.9 bits (72), Expect = 0.003 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 15/110 (13%) Query: 45 KIRAFNKDYEILETTH-EVFEKEEIDIAFFSAGGSVSEEFAISASKTALVIDNTSFFRLN 103 K+ A + Y+ + +H + + I + G +S+ A S ID S Sbjct: 131 KVYATYRKYQAIRISHGNISDDGSI---YKLTGIWLSKTSADSLGN----IDQGSLIETG 183 Query: 104 EKVPLVVPEINAKEIFNAPLNIIANPNCSTIQMTQIL--NPLHLHFKIKS 151 E+ L VP + ++ + +T L NP + +S Sbjct: 184 ERCVLTVPSTDIEKEILDL-----AAATERLNLTDALNSNPAGNLYDWRS 228
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 642 bits (1657), Expect = 0.0 Identities = 179/671 (26%), Positives = 306/671 (45%), Gaps = 66/671 (9%) Query: 9 RIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAAT 68 +I NIG+ AH+DAGKTT +E +L+ +G ++G V G D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 TCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGV 128 + W++ ++N+IDTPGH+DF EV RS+ VLDGA+ + + GVQ Q+ ++ K G+ Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIVFVNKMDRIGANFYSVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNN 188 P I F+NK+D+ G + +V IK++L A V Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------------------------- 154 Query: 189 ETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSVEEIKKGIKTG 248 K VE P+ + E + + V E ++ L+EKY+ G+ L E+++ Sbjct: 155 -----KQKVELYPNMCVTNFTESEQ--WDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 207 Query: 249 CLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKSEEEVFVKSSDDGE 308 N SL P+ GS+ N G+ L++ + + + T E Sbjct: 208 FHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH-------------------RGQSE 248 Query: 309 FAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKE 368 G FKI +L ++R+Y G L V S K+K ++ + + + I + Sbjct: 249 LCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDK 307 Query: 369 VYAGEICAFVG----LKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMG 424 Y+GEI L L GDT + ER+E P P++ VEP +E + Sbjct: 308 AYSGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLL 362 Query: 425 VALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484 AL ++++ DP R T + ++ +G++ +E+ L+ ++ VE EI +P V + E Sbjct: 363 DALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME 422 Query: 485 TIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKG 544 R E+ + + + + + P GSG ++ + +S G + + + AV +G Sbjct: 423 --RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 545 IQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPM 604 I+ + G L G+ V D K+ G Y+ S+ F++ + ++ + A LLEP Sbjct: 481 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 539 Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664 + ++ P+EY+ D + I + I++ +P + Y +DL T G Sbjct: 540 LSFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 599 Query: 665 RGTYSMEFDHY 675 R E Y Sbjct: 600 RSVCLTELKGY 610