>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 109 bits (274), Expect = 4e-30 Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 33/284 (11%) Query: 35 LTQRTIAHAMGVTAVPNEPQRIVVLTNEATDMVLALGVTPVGAV-----KSWSGDPYYEY 89 L Q AHA + P RIV L +++LALG+ P G + W +P Sbjct: 22 LWQMNTAHAAAID-----PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPP--- 73 Query: 90 LAKDMLGVPIVGDEMQPNLEKIVALQPDLIIGSRLRQGQIYKSLSAIAPT-VFSETIGES 148 L ++ V G +PNLE + ++P ++ S G + L+ IAP F+ + G+ Sbjct: 74 LPDSVIDV---GLRTEPNLELLTEMKPSFMVWS-AGYGPSPEMLARIAPGRGFNFSDGKQ 129 Query: 149 ----WQDNLRLYGQALDREAEAEQLLNDWDTRVAQMRQKLSAKDLT-ISLVRFM-PRGAR 202 + +L L+ ++ AE L ++ + M+ + + + L + PR Sbjct: 130 PLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHML 189 Query: 203 IYLQNSFPGQILQAVGLERP-ASQANHGFAEHVSFEQIPQMEADALFYFIYTGDSGDQTP 261 ++ NS +IL G+ + N + VS +++ + + F D Sbjct: 190 VFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCF-------DHDN 242 Query: 262 GSITNPWLNHPLWQQLEVVQSGKAYAVSDVVWTTAGGIQAAHLL 305 + + PLWQ + V++G+ V VW + A H + Sbjct: 243 SKDMDALMATPLWQAMPFVRAGRFQRVPA-VWFYGATLSAMHFV 285
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 9e-05 Identities = 64/326 (19%), Positives = 118/326 (36%), Gaps = 41/326 (12%) Query: 32 KTNSAMSVALILVFYQLPQIIITPLSGILTDYFSHKKLLIVSDIGSAVCTFSVGILAFLQ 91 + ++L Y L Q P+ G L+D F + +L+VS G+AV + FL Sbjct: 38 SNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW 97 Query: 92 ILNVKYIYLIASIIGCFGNIQTLSYITLVPLIVPYQHHARASSMGAITA-YSAGIVAPAL 150 +L + I +A I G G + +YI + RA G ++A + G+VA + Sbjct: 98 VLYIGRI--VAGITGATGAVAG-AYIADITDG-----DERARHFGFMSACFGFGMVAGPV 149 Query: 151 AGILFPVMGLTGITIIDMTTFMIAAITIL-ILPIAFGIKSPKITNQTLFVVRLKENFVDD 209 G GL G F AA+ L L F + + Sbjct: 150 LG------GLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLA-- 201 Query: 210 IFFGLKYIYNHPNLSKILIIFSLFSFVEGITEVIYQPMILAKTGGNTEILGIIVAIGGVG 269 ++ ++ ++ +F + V + ++ + + +GI +A G+ Sbjct: 202 ---SFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGIL 258 Query: 270 GI-----VGGTICSIWGGFKRRTTGIFIGFIINGFSRLAMGLIAQ-----PKFWLLANVG 319 + G + + G + +G I +G + + + P LLA+ G Sbjct: 259 HSLAQAMITGPVAARLG----ERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGG 314 Query: 320 ASLPSPLITSSYTAIWYEKVAREIQG 345 +P + A+ +V E QG Sbjct: 315 IGMP------ALQAMLSRQVDEERQG 334
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 76.9 bits (189), Expect = 4e-18 Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 55/276 (19%) Query: 57 PQRVVVLGPYLLEPLLALNIQPIAYADHIAFHKEDYDHPTEQIPYLGQYINKP-----IA 111 P R+V L +E LLAL I P AD I +Y ++++P + Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTI-----NYR----------LWVSEPPLPDSVI 79 Query: 112 NVGIAYMPSLEGIFKAKPDLILSPDHNKNEYQKFSQLAPTLMLSWNEPT-------ENLE 164 +VG+ P+LE + + KP ++ + +++AP ++++ ++L Sbjct: 80 DVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLT 139 Query: 165 KIAQAVKQEEKVEQLLQETQQEIEKAKQEFSKIVAGYPKMLLLHAQNLQELSIANNEDLC 224 ++A + + E L + + I K F K G +LL + + + + L Sbjct: 140 EMADLLNLQSAAETHLAQYEDFIRSMKPRFVK--RGARPLLLTTLIDPRHMLVFGPNSLF 197 Query: 225 SSLIEELGFELVSLPGAGTSTNSRL---PLSLESLPKLNNANSIIILGYNFQEFNKSKSR 281 +++E G +P A + +S++ L + + + Sbjct: 198 QEILDEYG-----IPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCF-------------- 238 Query: 282 QNFTEHQLSNLQQQWSENAITQSMKASRENRVYYIP 317 +H S + Q+M R R +P Sbjct: 239 ----DHDNSKDMDALMATPLWQAMPFVRAGRFQRVP 270
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 101 bits (252), Expect = 6e-25 Identities = 52/315 (16%), Positives = 107/315 (33%), Gaps = 42/315 (13%) Query: 113 GRVEEILVREGQRVEQGQVLFRID-------NDVLQTQLLEAQANLAAARAQLAELEAG- 164 V+EI+V+EG+ V +G VL ++ Q+ LL+A+ + +E Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 165 -------------SRQEDVAAAAAQLRQAQTRLANAQGGASPEEIAQAQAQLDSAKA--- 208 + E+ L + Q Q + + +A+ + A Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARIN 224 Query: 209 ----AAELASERVRRFRNLRDQGVISLDAYDQQLKEERQAIADVEAAQRRLQQLRQARSS 264 + + R+ F +L + I+ A +Q + +A+ ++ + +L+Q+ S Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIE----S 280 Query: 265 DVERLTAEVDAQRQNLNRLQAGERPETIAQARARVGQALASVKTLQARLDKSEITAPFAG 324 ++ E Q + + Q +G + + R S I AP + Sbjct: 281 EILSAKEEYQLVTQLFKNEILDK----LRQTTDNIGLLTLELAKNEERQQASVIRAPVSV 336 Query: 325 VVGYIPVK-LGDYVQANDDLTNLT-ENQQLDLNLAVPLAQAPRLRPGLVVEIL----DGQ 378 V + V G V + L + E+ L++ V + G I Sbjct: 337 KVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYT 396 Query: 379 EKAIARGQISFVSPD 393 G++ ++ D Sbjct: 397 RYGYLVGKVKNINLD 411
>PF05844#YopD protein Length = 295 Score = 28.4 bits (63), Expect = 0.036 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 8/108 (7%) Query: 125 LDQTFTARTEINELLLRELDISTDPWGVKVTRVELRDIMPSKAVLDSM----ELQMTAER 180 L + R E+ + ++ L ++D V +V D L + E + A + Sbjct: 155 LQKNIDGRNELIDAKMQALGKTSDEDRKIVGKVWAADQAQDSVALRAAGRAFESRNGALQ 214 Query: 181 KKRAAILTSEGQRDSAINSAQGDAQARVLEAEAKKKAAILNAEAEQQK 228 I + ++++ QG++QA E E A I ++++QK Sbjct: 215 VANTVIQSFVQMANASVQVRQGESQASAREEEV--NATI--GQSQKQK 258
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.2 bits (63), Expect = 0.031 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 13 ERSYFEQALKRVEQDVLRMGALVEESFRMSHQALFENR---LETPLKIAELEKEIDR--- 66 E AL++ ++++ + E S +F L+ P + ++ +I+ Sbjct: 40 EIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQM 99 Query: 67 -----LYRHIEQECASFLTLQAPV----AQDLRLLS 93 L + + F ++ A D+R +S Sbjct: 100 NAEYALKEVSDMFVSMFESMDNEYMKERAADIRDVS 135
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.010 Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 3/110 (2%) Query: 342 EDQLSLAIGKEGQNVRLAARLTGWKIDIKDPETYARDKEAIEQSILERAAASAQARAERE 401 L+ E + +RL + + E +E +++ E Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 402 AAEQ---EAQAKLEAEMAALEAEEAEELEETPEAIAEVEEEVEEWDQDQG 448 E A+ + + + E ++L +T + I + E+ + ++ Q Sbjct: 277 QIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQ 326
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 79.9 bits (197), Expect = 2e-17 Identities = 87/410 (21%), Positives = 155/410 (37%), Gaps = 91/410 (22%) Query: 500 IMGHVDHGKTTLLDSI-----RKTKVAQGEAG-------------GITQHIGAYHVEVEH 541 ++ HVD GKTTL +S+ T++ + G GIT I + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGIT--IQTGITSFQW 65 Query: 542 NDKTEQIVFLDTPGHEAFTAMRARGAKVTDIAILVVAADDGVQPQTKEAISHAKAAGVPL 601 + I+ DTPGH F A R V D AIL+++A DGVQ QT+ + G+P Sbjct: 66 ENTKVNII--DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT 123 Query: 602 IVAINKVDKPEANPDRIKQELSEL---------------------GLLAEEWG------- 633 I INK+D+ + + Q++ E +E+W Sbjct: 124 IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGND 183 Query: 634 --------GDTI-----------------MVPV---SALNGDNLDGLLEMILLVSEVEEL 665 G ++ + PV SA N +D L+E+I ++ Sbjct: 184 DLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVI--TNKFYSS 241 Query: 666 VANPNRQAKGTVIEANLDRTRGPVATLLIQNGTLRVGDAIVV-GAVYGKIRAMIDDRGDK 724 + G V + R +A + + +G L + D++ + KI M + Sbjct: 242 THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGE 301 Query: 725 VEEASPSFAVEILGLGDVPAAGDEFEVFTNEKDARLQAEARAMEDRQTRLQQAMSSRKVT 784 + + +++ EI+ L + ++ + D +L + +E+ LQ + K Sbjct: 302 LCKIDKAYSGEIVIL-----QNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQ 356 Query: 785 LSSISAQAQEGELKELNIILKADVQGSLGAILGSLEQLPQGEVQIRVLLA 834 + A E+ + + +L+ V + I+ S G+VQ+ V A Sbjct: 357 QREMLLDALL-EISDSDPLLRYYVDSATHEIILSF----LGKVQMEVTCA 401
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 29.3 bits (65), Expect = 0.012 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 63 ISDSSEIFRFLEEFSPDRRLFPLEAEQRLRAEWLEDWLDESIGTATRFVYYDYRAGAGKA 122 + DS+ I L + + R P A A+WL ++ES+ A +YY Y A G Sbjct: 161 LHDSNGILHLLGKTAAARLSDPQAASHT--AQWL---VEESVTPAGEHIYYSYLAENGDN 215 Query: 123 ID 124 +D Sbjct: 216 VD 217
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 29.3 bits (65), Expect = 0.020 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 7/71 (9%) Query: 182 EFAKAVEEKQIAEQRAQRAVYVAQEAEQQAQADINRAKGKAEAQRLLAETLKAQGGELVL 241 + A+A E++ A +AV +AQ+ AQ+++ + G+ +TL ++ + Sbjct: 172 KLAEAEEKRLAALSEEAKAVEIAQKKLSAAQSEVVKMDGE-------IKTLNSRLSSSIH 224 Query: 242 QKEAIEAWREG 252 ++A G Sbjct: 225 ARDAEMKTLAG 235
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 106 bits (265), Expect = 7e-27 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 4/149 (2%) Query: 8 KGNILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDG 67 IL+ DD +L+ L GY VR ++ R + DL++ D+ MPD + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 68 YQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFT 127 + + IKK D+P++ +SA +KA E G DY+ KPF + E++ I Sbjct: 63 FDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA-- 118 Query: 128 IQRQRIALKREVRKRREAEEVLYQSRALL 156 + + + ++ ++ +S A+ Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQ 147
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 5e-13 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690 ILV DD + R +L + L+ G+++ SN + + L+ D+ MP + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 691 ATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSLTKHLG 748 IK V+ ++A G D+L KPF + + + L Sbjct: 65 LLPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 42.7 bits (100), Expect = 3e-06 Identities = 62/317 (19%), Positives = 96/317 (30%), Gaps = 46/317 (14%) Query: 117 DKKAATKDQDNTEVESVTGAVKRDLPETGEQLKSVDD--------SAPASVTETVTSTVE 168 +K+ T D N + A +P E++ VD+ + P+ TETV + Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK 1045 Query: 169 QVSESIPTEAESAIET---AEEVVVE--LNQAAETLAEEVVEKAEEAVEKVAEMVGQKEE 223 Q S+++ + A ET EV E N A T EV + E E Q E Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKET------QTTE 1099 Query: 224 KPVNPAPEKEEEVLLKKPKSKLFQRLFGRKKAAVPPVQ----PKASQPETVEQKVAIEPE 279 EKEE+ ++ K VP V PK Q ETV+ + E Sbjct: 1100 TKETATVEKEEK-----------AKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 280 SSTAQTDDWDDGEDWGEDLPSTEDSSPGGEISDEVSEDNPENDQTKVIAVVE-----TVQ 334 + + + V+E N V+ E T Q Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Query: 335 IEQQITLIEVPDSEN-------ITAEEAPAAPLIEEEQIAQEEIVVDEVIAPMSGTTAAV 387 P + + E + +A ++ A +S A Sbjct: 1209 PTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA 1268 Query: 388 IEVTMPELVDPETNIEQ 404 V + +I Q Sbjct: 1269 QFVALNVGKAVSQHISQ 1285 Score = 31.2 bits (70), Expect = 0.011 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 28/216 (12%) Query: 259 PVQPKASQPETVEQKVAIEPESSTAQTDDWDDGEDWGEDLPSTEDSSPGGEISDEVSEDN 318 PV P A + + E ++T + ++ + +TE ++ E++ E + Sbjct: 1024 PVPPPAPATPSETTETVAENSKQESKTVEKNEQD-------ATETTAQNREVAKEAKSNV 1076 Query: 319 PENDQTKVIAVVETVQIEQQITLIEVPDSENITAEEAPAAPLIEEEQIAQEEIVVDEVIA 378 N QT +A + E Q T E +E+E+ A+ E + + Sbjct: 1077 KANTQTNEVAQSGSETKETQTT-------------ETKETATVEKEEKAKVETEKTQEVP 1123 Query: 379 PMSGTTAAVIEVTMPELVDPETNIEQGPDSSGVDEVYERETETEEIGEITEAIASDLEEV 438 ++ + E + E E P + + E + T + + + + Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVN-IKEPQSQTNTTADTEQPAKETS------ 1176 Query: 439 PEPRTDVNE-TTVNTDIAEEEETQNEGEEPTEEKQN 473 V E TTVNT + E +N T+ N Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 105 bits (264), Expect = 6e-28 Identities = 66/343 (19%), Positives = 135/343 (39%), Gaps = 37/343 (10%) Query: 11 SVFLTGHTGFKGSWLTLWLSQLGAKVSGY-SLDPLTNPNLCE--LAEIAKCLRSDTRADV 67 +TG GF G ++ L + G +V G +L+ + +L + L +A+ + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 68 NDLANLQKAIAEARPEIVFHLAAQPLVRRSYRDPVGTFATNVMGTAHLLEALRASDSVRV 127 D + A E VF + VR S +P +N+ G ++LE R + ++ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK-IQH 120 Query: 128 VVIVTTDKVY---RNVEWCWPYREDDQLGGH--DPYSASKAACEIVVASYRDAFLREQGV 182 ++ ++ VY R + P+ DD + H Y+A+K A E++ +Y + G+ Sbjct: 121 LLYASSSSVYGLNRKM----PFSTDDSV-DHPVSLYAATKKANELMAHTYSHLY----GL 171 Query: 183 AVASARAGNVIGGGDWSE-DRLIPDVVRA-LDAKTMVIIRRPQAIRPWQHVLEPLAGYLL 240 R V G W D + +A L+ K++ + + R + ++ + + Sbjct: 172 PATGLRFFTVY--GPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 241 LAQKLWHSPELAGAYNLGPETKDA---------ATVRQILEFASRIEPGLQVE----YGD 287 L + H+ P A ++ +++++ +E L +E Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP 289 Query: 288 GNEGPHEAGWLSLEIAKARTLLGYRPSWGVEEAVRRTMIWYRS 330 G + ++G+ P V++ V+ + WYR Sbjct: 290 LQPGDVLETS--ADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 29.0 bits (65), Expect = 0.041 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 151 GIEPTASTAAAAEKLGIAVLKEFFGENLGRSLSAKGQQADLIIGNNVFAHVPDIN 205 GIE S A + + L+E +L +G + +++ F H D+ Sbjct: 42 GIERIWSAIGATDGFALLNLEE------AITLRERGWKGPILMLEGFF-HAQDLE 89
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.0 bits (91), Expect = 1e-05 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 205 MAMVEQERLKAIQAEQDAEQERLKATQAQQDAEQERLKAIQAQQDAEQERLKAI-QAQQD 263 A++EQE K ++A + + + Q + + + + Q + E L + Q + Sbjct: 252 HAVLEQEN-KYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 264 AEQAKAELQKLQDKVRSLGI 283 EL K +++ ++ I Sbjct: 311 IGLLTLELAKNEERQQASVI 330 Score = 34.8 bits (80), Expect = 4e-04 Identities = 16/134 (11%), Positives = 42/134 (31%), Gaps = 22/134 (16%) Query: 175 IEGQELRYFTLEGAVLPTPQEAVRIEVDKGMAMVEQERLKAIQAEQDAEQERLKATQAQQ 234 EL + V E + + +E+ Q ++ ++ L +A++ Sbjct: 157 SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAER 216 Query: 235 DAEQERLKAIQAQQDAEQERLKA----------------------IQAQQDAEQAKAELQ 272 R+ + E+ RL ++A + K++L+ Sbjct: 217 LTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLE 276 Query: 273 KLQDKVRSLGISID 286 +++ ++ S Sbjct: 277 QIESEILSAKEEYQ 290
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 84.8 bits (210), Expect = 2e-20 Identities = 61/329 (18%), Positives = 108/329 (32%), Gaps = 63/329 (19%) Query: 129 NILITGGRGFIGTALQGALINSEFRLI---------SPTREQ---------------IDI 164 L+TG GFIG + L+ + +++ + +Q ID+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 165 FAGSTKLDLLASEENIDCIVHLA----------NPRVYTSNVAMGQTLTMLRNVIDVCLA 214 A + L + + + + NP Y + G N+++ C Sbjct: 62 -ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFL-----NILEGCRH 115 Query: 215 KDIP-LIYPSSWEIYSGYAGTIHADESTPALPRGPYGETKYLAEILIDHCRRTRGLRCAI 273 I L+Y SS +Y + + + P Y TK E++ GL Sbjct: 116 NKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 274 LRSSPVYGSMSDKPKFIFNFFKKASQGQKIVTHHYINGNPKLDLLHIDDLISSIVATLKS 333 LR VYG +F F K +G+ I Y G K D +IDD+ +I+ Sbjct: 176 LRFFTVYGPWGRPDMALFKFTKAMLEGKSIDV--YNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 334 RFIGN-------------------LNIGTGQLSSTLKIAEMIRDELGSSSMIQQIEV-NT 373 + NIG + + + D LG + + + Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPG 293 Query: 374 EVASIAMNYGRANHVLDWEPVIFFEQGLK 402 +V + + V+ + P + G+K Sbjct: 294 DVLETSADTKALYEVIGFTPETTVKDGVK 322
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 137 bits (346), Expect = 7e-40 Identities = 79/329 (24%), Positives = 143/329 (43%), Gaps = 42/329 (12%) Query: 8 KILVTGGAGYIGSSVVRQLGEAGYSIVVYDNCSTGFPSSILYGQL----------VIGDL 57 K LVTG AG+IG V ++L EAG+ +V DN + + S+ +L DL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 58 ADTERLHQVFHEHEILAVMHFAGSLIVPESLIHPLNYYANNTSNTLSLIRCCQIFGVNRL 117 AD E + +F V L V SL +P Y +N + L+++ C+ + L Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 118 IFSSTAAVYGNSSSNPISEAEI-PCPINPYGRSKLASEWIIQDYAKSSALQYVILRYFNV 176 +++S+++VYG + P S + P++ Y +K A+E + Y+ L LR+F V Sbjct: 122 LYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTV 181 Query: 177 AGADPEGRLGQMSKTTTHLVRSVCDAILNLKPSLDIFGTDFPTRDGTAVRDYIHVEDLAK 236 G P GR M+ + A+L K +D++ G RD+ +++D+A+ Sbjct: 182 YG--PWGR-PDMA------LFKFTKAMLEGKS-IDVYN------YGKMKRDFTYIDDIAE 225 Query: 237 AHLDALRYL---------ENGGES------QILNCGYGQGYSVREVVDRAKAISGVDFLV 281 A + + E G + ++ N G + + + + G++ Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK 285 Query: 282 RETERRLGDPASVIACADSIRQVLNWTPK 310 + GD A ++ +V+ +TP+ Sbjct: 286 NMLPLQPGDVLETSADTKALYEVIGFTPE 314
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 82.9 bits (205), Expect = 4e-20 Identities = 71/343 (20%), Positives = 131/343 (38%), Gaps = 47/343 (13%) Query: 1 MKIALISGISGQDGAYLAQLLIEKSYAVWG-----TSRDAQISNFRNLKILGIRESIKVV 55 MK L++G +G G ++++ L+E + V G D + R L++L + + Sbjct: 1 MKY-LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQAR-LELLA-QPGFQFH 57 Query: 56 SMALTDFRSVLQVVSQVNPDEIYNLAGQSSVGLSFEQPVETLESITIGTLNLLEVVRFLD 115 + L D + + + + + ++ + +V S E P +S G LN+LE R Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 116 KPIKLYSASSSECFGDTGN-SAADENTAFRPRSPYAVAKSAAFWQVANYREAYNLYACSG 174 L ASSS +G + +++ P S YA K A Y Y L A Sbjct: 118 -IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 175 ILFNHESPL-RPE----RFVTQKIIATACRIAQGSQEKLYLGNTSISRDWGWAPEYVEAM 229 F P RP+ +F + +G +Y + RD+ + + EA+ Sbjct: 177 RFFTVYGPWGRPDMALFKFTK--------AMLEGKSIDVY-NYGKMKRDFTYIDDIAEAI 227 Query: 230 YLMLQQAKPDD-------------------YVIATGASYLLQDFVEITFSSLGLNWREHV 270 + D Y I + L D+++ +LG+ ++++ Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 271 IIDQSLFRPTDLAMGKANPRKAQEQLGWKAEYKTPDVVKMMIN 313 + +P D+ A+ + E +G+ E D VK +N Sbjct: 288 LP----LQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVN 326
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 38.2 bits (89), Expect = 2e-06 Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 20 IFNLGNGNGFSVREMIATAQLVTNRPIPVLQGDRRPGDPPILVGSSEKARQILGWQP 76 ++N+GN + + + I + +PGD ++ +++G+ P Sbjct: 257 VYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTP 313
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 53.1 bits (127), Expect = 3e-09 Identities = 39/291 (13%), Positives = 90/291 (30%), Gaps = 19/291 (6%) Query: 264 TETIQRSIQQKREVELTTRVAIEQGELEA------EKKSLAIKREQEDANITQQKEIELL 317 + S+ E A A E + K+E + +Q E Sbjct: 1003 IQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETT 1062 Query: 318 KLAQRKELESQE----AQQQREIQEAKDKEEAKKERNKILQEQAVEEERIQKELAIQNS- 372 + E++ Q E+ ++ E + + + + VE+E K + Sbjct: 1063 AQNREVAKEAKSNVKANTQTNEVAQSG-SETKETQTTETKETATVEKEEKAKVETEKTQE 1121 Query: 373 --QIASAIALEERNKELKVAQALQKQEAE----VAEIQRKKTIEASQLQAKAEIALAEQK 426 ++ S ++ ++ E QA +E + + E Q + A Q E + + + Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS-SNVE 1180 Query: 427 TQITEQTAAIAIANKQKERLEAEALRAEAESGVITAQEVEAAERAQKLAVIVAQQDAQQH 486 +TE T + + + ++ + + R +V + A Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240 Query: 487 RIAEQNVVEIDVFRRRRQAESARQAAELEAESIRTLADANRHKAMAEAEGQ 537 V D+ A + A+ + ++ ++H + E + Sbjct: 1241 SNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHISQLEMNNE 1291 Score = 30.8 bits (69), Expect = 0.021 Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 7/168 (4%) Query: 381 EERNKELKVAQAL---QKQEAEVAEIQRKKTIEASQLQAKAEIALAEQKTQITEQTAAIA 437 E+RN+ + Q + + I A A +E T +A Sbjct: 986 EKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATP----SETTETVA 1041 Query: 438 IANKQKERLEAEALRAEAESGVITAQEVEAAERAQKLAVIVAQQDAQQHRIAEQNVVEID 497 +KQ+ + + + E+ + + A+ K + E E Sbjct: 1042 ENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK 1101 Query: 498 VFRRRRQAESARQAAELEAESIRTLADANRHKAMAEAEGQKAIIEAHN 545 + E A+ E E + + + + +E +A N Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 1e-19 Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Query: 1 MGTASLLVADDDPDNFDVIDALLADQGYELNYADSGQRAIDNLDTFQPDLLLLDVMMPGL 60 M A++LVADDD V++ L+ GY++ + + DL++ DV+MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGVEVCRMIRASARWHALPIIMVTALDSKLSLANCLAAGADDFISKPLN---GLELQARI 117 + ++ I+ LP+++++A ++ ++ GA D++ KP + + + R Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 118 QAMLRLKHQ 126 A + + Sbjct: 119 LAEPKRRPS 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 2e-18 Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 12/167 (7%) Query: 7 RLHVLLIEDQQCQVELLKVLLESQSFFAVQLQVTRTLAQGVNRLQSGIFDTILLDLFLPD 66 +L+ +D +L L + +++T A + +G D ++ D+ +PD Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 67 GQGIEALRTVQKFAPHIPIIVLTAATDLNMGLAALQKGAEDYLVK-----EHLRESQIAK 121 + L ++K P +P++V++A + A +KGA DYL K E + A Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 122 SILYALERK--KARRELQVQIERERLMARILEEIRQ--SLDLSVILQ 164 + K ++ + R M I + + DL++++ Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMIT 166
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.001 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 21/97 (21%) Query: 30 HKWLVWEILFKLGLNGVFVVVSIMAIARLLPH-----QQAQQAKLNEIQMQVEETEARVE 84 K + + + L + +F VV + + LL + +QA++++ +M EA++ Sbjct: 107 TKPVAFTLPLALSI--IFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQEAQLM 164 Query: 85 QLRNDFQRSF--------------DPGQSRKIMEELS 107 L+ F DP ++R+++ LS Sbjct: 165 ALKAQINPHFMFNALNNIRALILEDPTKAREMLTSLS 201
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 0.006 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 18/82 (21%) Query: 197 VLLVGPPGTGKTLLAKAV---AGEAGVPFFSIS---------GSEF--VEMFVGVGASRV 242 +++ G GTGK L+A+A+ PF +I+ SE E GA Sbjct: 163 LMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR 222 Query: 243 RD-LFEQAKANAPCIVFIDEID 263 FEQA+ +F+DEI Sbjct: 223 STGRFEQAEGGT---LFLDEIG 241
>PF07299#Fibronectin-binding protein (FBP) Length = 219 Score = 25.6 bits (56), Expect = 0.015 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 2 LKTSEFQKAIESVENLPLDDQEILLDIIQKRLQEKRRKKLAEEIKEIRQEF 52 LK+ +K I ENL D+Q+ L+D + + + +I F Sbjct: 42 LKSLAIEKIIHVFENLT-DEQKELIDTVLTVQNREDAESFLLKINPYVIPF 91
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 42.5 bits (100), Expect = 2e-06 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 12/109 (11%) Query: 152 DNDTLSALVASLVEADWLFLLTDVDRLYSSDPRLDPDAYPIPLVKAAELAQLQVRTDSTG 211 D D +A V AD +LTDV+ + VK EL + Sbjct: 214 DKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQWLREVKVEELRKYYEE----- 266 Query: 212 SAWGTGGMATKITAA-RIATGSGVRTVITHGQKPEQILAILQGANLGTQ 259 + G M K+ AA R G R +I H E+ + L+G GTQ Sbjct: 267 GHFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEG-KTGTQ 311 Score = 28.6 bits (64), Expect = 0.034 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Query: 7 PQTLVIKIGTSSLAR---PETGQLALSTIAALVETVCKLIGQGHRVVLVSSGAIGVG 60 + +VI +G ++L + + + + + + ++I +G+ VV+ VG Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVG 58
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 33.0 bits (75), Expect = 0.004 Identities = 31/144 (21%), Positives = 44/144 (30%), Gaps = 18/144 (12%) Query: 538 LPEATIPPVESQSAPEEELDSPGEPEQEQLVLENSSPPTADSAPEAKQDDLNLAVKPTPK 597 P PP Q P E EPE E + P P+ K KP PK Sbjct: 51 TPADLEPPQAVQ--PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP-------KPKPK 101 Query: 598 -TVKQEAQPSPEVIATHSKLVSVAEKNPLTLFT---PQTPPAEAFLSINLQGEIAWHPEE 653 K + QP +V S+ S E T ++ S+ G A + Sbjct: 102 PVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA-SGPRALSRNQ 160 Query: 654 LTSANSFEPLDQQFSIQGRETLIV 677 + Q I+G+ + Sbjct: 161 ----PQYPARAQALRIEGQVKVKF 180
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.1 bits (130), Expect = 4e-11 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 13/114 (11%) Query: 49 TTVLIVEDDPMNFRVFSKILTKRGGFTVKGSEDVAEVLALARSKAVDVILIDVSLSRSHY 108 T+L+ +DD V ++ L+ R G+ V+ + + A + + D+++ DV + Sbjct: 4 ATILVADDDAAIRTVLNQALS-RAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE-- 60 Query: 109 QGKAYNGIQ-ITQLLKQDPATASLPVILVTAHAMVGDRESLLAQSGAEGYIAKP 161 N + ++ K P LPV++++A + GA Y+ KP Sbjct: 61 -----NAFDLLPRIKKARP---DLPVLVMSAQNTFMTAIKAS-EKGAYDYLPKP 105
>adhesinb#Adhesin B signature. Length = 310 Score = 250 bits (640), Expect = 7e-84 Identities = 79/309 (25%), Positives = 133/309 (43%), Gaps = 45/309 (14%) Query: 9 RFVQPLGVAFVLGLSTLGCQPAVEQVGQNGQVEDAPVADAMDITVSIPPQQYFLEKIGGD 68 RF+ L +AFV GL+ Q + + G + A + DIT + I GD Sbjct: 5 RFLVLLLLAFV-GLAACSSQKSSTETGSSKLNVVATNSIIADIT----------KNIAGD 53 Query: 69 LVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFE---QPWLEKLKAANANMKL 125 + + +VP DPH YEP P+ + S+A+ G+ E W KL NA K Sbjct: 54 KINLHSIVPVGQDPHEYEPLPEDVKKTSQADLIFYNGINLETGGNAWFTKL-VENAKKK- 111 Query: 126 IDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPT 185 E + + S E + EK K DPH WL+ Sbjct: 112 --------------------ENKDYYAVSEGVDVIYLEGQSEKGK-----EDPHAWLNLE 146 Query: 186 LVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLP-QRKFIVFHP 244 A IAK L+E DP N++ YE NL A++ +L L++E + +P ++K IV Sbjct: 147 NGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLSALDKEAKEKFNNIPGEKKMIVTSE 206 Query: 245 S-WAYFARDYNLVQIPI-EVEG-QEPSAQELKQLIDTAKENNLTMVFGETQFSTKSSEAI 301 + YF++ YN+ I E+ +E + ++K L++ ++ + +F E+ + + + Sbjct: 207 GCFKYFSKAYNVPSAYIWEINTEEEGTPDQIKTLVEKLRKTKVPSLFVESSVDDRPMKTV 266 Query: 302 AAEIGAGVE 310 + + + Sbjct: 267 SKDTNIPIY 275
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 32.7 bits (74), Expect = 0.016 Identities = 33/217 (15%), Positives = 66/217 (30%), Gaps = 20/217 (9%) Query: 323 PPNAPSTPDLSASSDSGLSSTDNITNDTTPTFNGTAEANSTVTLFSGGSTQIGSTTANGS 382 P A + ++A++ S N + + +++ + + GS Sbjct: 19 APIAATAMPVNAATTINADSAINANTNA----KYDVDVTPSISAIAAVAKSDTMPAIPGS 74 Query: 383 GNWTITASTPADGNYSITAKATDAAGNVSTASSALGITIDNTTPNLASAIEISDTALKIG 442 +I+AS +G D+ T S+ + + A + + D + G Sbjct: 75 LTGSISASY--NGKSYTANLPKDSGNATITDSNNNTVKPAELEADKAYTVTVPDVSFNFG 132 Query: 443 DT---ATVTFTFSEAVIGFTNADIIVVDGSLSSPTSSDGGITWTATLTPNANAESNSNV- 498 +T + + FT ++ DG ++ N A + Sbjct: 133 SENAGKEITIGSANPNVTFTEKTGDQPASTVKVTLDQDGVAKLSSVQIKNVYAIDTTYNS 192 Query: 499 ----------ITLDNTGISDLAGNNGTGTTTSVSYAV 525 T+ +S A N G TSV A+ Sbjct: 193 NVNFYDVTTGATVTTGAVSIDADNQGQLNITSVVAAI 229
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 45.3 bits (107), Expect = 6e-08 Identities = 12/76 (15%), Positives = 30/76 (39%) Query: 98 QQAAMLDGENAELFGSMGYLYARQGQFAEASRSFQQALRVNPNNPDYYDGLGFSYARQGL 157 + + E S+ + + G++ +A + FQ ++ + ++ GLG G Sbjct: 26 AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQ 85 Query: 158 LNEAASAYATAISLGP 173 + A +Y+ + Sbjct: 86 YDLAIHSYSYGAIMDI 101 Score = 29.9 bits (67), Expect = 0.012 Identities = 12/46 (26%), Positives = 20/46 (43%) Query: 333 EAVWVFRDLTRLQPSNADFYYLLGEAYAVDEKIDLAKKSFGEAKKL 378 +A VF+ L L ++ F+ LG + DLA S+ + Sbjct: 54 DAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIM 99
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 5e-24 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 9 HLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYA 68 +L+ DDD + ++ L GY V N + D++V D++MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 69 FIEQVRQ-NPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ 127 + ++++ PD +PV+ +SA+ +K GA Y+ KPF+ EL + L + Sbjct: 65 LLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 128 ADRLLQ 133 R Sbjct: 122 PKRRPS 127
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 47.3 bits (112), Expect = 2e-06 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 3211 LGTIGDDVMLGSPTGEIFVAGQGDDQIYTNGGVDTVYAGPGNDFVTVTDTNFRRLDGGSG 3270 +GT D GS +IF GDD I N G D +Y GND ++ + + +L GG G Sbjct: 723 IGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGD-DQLYGGDG 781 Query: 3271 NNILKFTGYTN 3281 N+ L N Sbjct: 782 NDKL-IGVAGN 791 Score = 37.6 bits (87), Expect = 0.001 Identities = 49/215 (22%), Positives = 74/215 (34%), Gaps = 33/215 (15%) Query: 3086 GDGFDDLLISAPLTPVIAGQFPDV--------------------NGDQGVSWVVFGGTHW 3125 GDG D + +SA + AG+ DV G+ V+ V+ G Sbjct: 617 GDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKV 676 Query: 3126 GTEYTANSPFGLGNLANNQTNNSQNFNPYG----FVTTGLPRSQAGISISGGADVNGDGF 3181 E +G S F T L + I + G F Sbjct: 677 LQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFGSKF 736 Query: 3182 SDFALGAPGNFDNLSYVLFGSDFTNQVNQLGTIGDDVMLGSPTGEIFVAGQGDDQIYTNG 3241 +D GA G D+L G+D G G+D + G + G G+D++ Sbjct: 737 TDIFHGADG--DDLIEGNDGND-----RLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVA 789 Query: 3242 GVDTVYAGPGNDFVTVTDTNFRR--LDGGSGNNIL 3274 G + + G G+D V + + L GG GN+ L Sbjct: 790 GNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKL 824
>SECA#SecA protein signature. Length = 901 Score = 30.2 bits (68), Expect = 0.014 Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 164 DVLLDSAAGGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVREP 223 D++ + A + + + VLVG+ + E+ EL L + G+ + + Sbjct: 425 DLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFH 484 Query: 224 ELRVKIVEQ 232 IV Q Sbjct: 485 ANEAAIVAQ 493
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 8e-18 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 3/115 (2%) Query: 3 TVLVVEDTKSDQLLVQGLLKSMGTEAVICNNADEALEWLNKNTVPDLIMLDIVMPDISGY 62 T+LV +D + + ++ L G + I +NA W+ DL++ D+VMPD + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPDENAF 63 Query: 63 DLCRKIRGELALEDVPIVFCSTKNEDYDRFWALRQGGNAYLIKPYSPIELMKTVK 117 DL +I+ D+P++ S +N A +G YL KP+ EL+ + Sbjct: 64 DLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.3 bits (193), Expect = 6e-18 Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 279 RPVIACVDDSPSIQRVVSFALEATGFKVINIKQASSALTTLMHAKPALILMDINMPDIDG 338 I DD +I+ V++ AL G+ V A++ + L++ D+ MPD + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 339 YQLCSICNKSEALKHIPIVMLTGRSGVLDRVKAKMHGSVGYICKPFQPQELVETVQ 394 + L + +A +P+++++ ++ + +KA G+ Y+ KPF EL+ + Sbjct: 63 FDL--LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 30.8 bits (69), Expect = 0.018 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 15/110 (13%) Query: 392 MLVLKIQGEPELPLLAEAAKKRAQWRKSQGAITIKMPEAIIKVNADEE--VQIYLQETSV 449 M + IQ +P ++ + + W A++ ++ + V + S Sbjct: 1 MAIPAIQPYQ-MPTASDMPQNKVSWV-------PDPNRAVLLIHDMQNYFVDAFTAGASP 52 Query: 450 SRQLVAEMMILAGEVAGRFCQEHGIPVPFRGQPQPELPSDEELLSLPPGP 499 +L A + L C + GIPV + QP + P D LL+ GP Sbjct: 53 VTELSANIRKLK-----NQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGP 97
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.0 bits (70), Expect = 0.015 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 18/88 (20%) Query: 241 AKIPRGVLLIGPPGTGKTLLAKAI---AGEAGVPFFSIS---------GSEF--VEMFVG 286 + +++ G GTGK L+A+A+ PF +I+ SE E Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 287 VGASRVRD-LFKKAKENAPCLVFIDEID 313 GA F++A+ +F+DEI Sbjct: 217 TGAQTRSTGRFEQAEGGT---LFLDEIG 241
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 79.7 bits (196), Expect = 2e-20 Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 33/155 (21%) Query: 43 THDRILKGALKLFGTKGYEGTTTKDLAQAANVAEGTLFRYFTNKKAILVEVAT------- 95 T IL AL+LF +G T+ ++A+AA V G ++ +F +K + E+ Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 96 ---------------AGWVEILTDLLTELSEMGSYKAIAQVMKRRMFHLRENKYLLQVCF 140 + EIL +L + + +++ + + E + Q Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ--- 128 Query: 141 VEAQYHPE--------LREKIQSEIIDKMTDVAEA 167 + E L+ I+++++ A Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRA 163
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 53.1 bits (127), Expect = 2e-09 Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 12/273 (4%) Query: 156 NEVAETRPKLVQLNSLVTRNQQLSDQLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQW 215 N E R + V ++ T N +D S N+ A E + Sbjct: 982 NPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPA--PATPSETTET 1039 Query: 216 NSQASQWEEQVRQLTAERDQVQQELQTARQQSQSAQTQAENLQAA-LDRLGQQEEQWQGE 274 ++ S+ E + + E+D + Q ++ N Q + + G + ++ Q Sbjct: 1040 VAENSKQESKTVE-KNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTT 1098 Query: 275 RSQLTAKLNQLEEAQKELALANAELKVKLETTQAEGDRLKTEKKEQAAALQSAQGQVTQL 334 ++ TA + + E+A+ E KV + + + ++ +T + + A ++ + Sbjct: 1099 ETKETATVEKEEKAKVETEKTQEVPKVTSQVS-PKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 335 QQELAALQENLAKAKGEPPSEVPEKTKAVATAPAQEAPVVSP-------SPPVTVEVKQE 387 Q + + E S V + T + V +P + P Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSN 1217 Query: 388 SPKSVQAEKVEPEPEPTPVPPAAQATKAPASPA 420 PK+ V P + ++ + Sbjct: 1218 KPKNRHRRSVRSVPHNVEPATTSSNDRSTVALC 1250 Score = 51.2 bits (122), Expect = 9e-09 Identities = 58/289 (20%), Positives = 87/289 (30%), Gaps = 63/289 (21%) Query: 206 QRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELQTARQQSQSAQTQAENLQAALDRLG 265 Q N + ++ +E A + A Q ++T +N Q A + Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTA 1063 Query: 266 QQEEQWQGERSQLTAKLNQLEEAQKELALANAELKVKLETTQAEGDRLKTEKKEQAAALQ 325 Q E + +S + A E AQ + ET E Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE---------------- 1107 Query: 326 SAQGQVTQLQQELAALQENLAKAKGEPPSEVPEKTKAVATAPAQEAPVVSPSPPVTVEVK 385 +E AK + E EVP+ T +Q +P K Sbjct: 1108 ----------------KEEKAKVETEKTQEVPKVT-------SQVSP------------K 1132 Query: 386 QESPKSVQAEKVEPEPEPTPVPPAAQATKAPASPAKKST-AKAVDEVLDQEEKQVKAVEK 444 QE ++VQ + EP E P + + A AK ++Q + V Sbjct: 1133 QEQSETVQPQ-AEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191 Query: 445 TEPPRENKTVAPVATSEDVAPTVETETITDP-------VATVPSNEEGA 486 EN T PTV +E+ P V +VP N E A Sbjct: 1192 GNSVVENPENT---TPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Score = 43.9 bits (103), Expect = 2e-06 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 17/157 (10%) Query: 337 ELAALQENLAKAKGEPPSEVPEKTKAVATAPAQEAPVVSPSPPVTVEVKQESPKSVQAEK 396 +L A + L G PE K T P ++ S S E Sbjct: 963 DLGAWKYKLRNVNGRYDLYNPEVEKRNQTVDTTNIT-----TPNNIQADVPSVPSNNEEI 1017 Query: 397 VEPEPEPTPVPPAAQATKAPASPAKKSTAKAVDEVLDQEEKQVKAVEKTEPPRENKTVAP 456 + P P P APA+P++ + A + + + + + TE +N+ VA Sbjct: 1018 ARVDEAPVPPP-------APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVA- 1069 Query: 457 VATSEDVAPTVETETITDPVATVPSNEEGAHPLAEKK 493 ++ V+ T T+ VA S + K+ Sbjct: 1070 ----KEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 74.4 bits (183), Expect = 5e-17 Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 22/188 (11%) Query: 13 FFVTGGTGFVGANLVRHLLEQGYQVRAL---------VRASSRPDNLQNLPIDWVVGDLN 63 + VTG GF+G ++ + LLE G+QV + +R + L + DL Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 64 DGDLHQQM---QGCQGLFHVAAH----YSLWQKDREALYRSNVLGTRNILACAQKAGIER 116 D + + + +F YSL ++ A SN+ G NIL + I+ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSL--ENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 117 TVYTSSVAAIGVKGDGQRADESYQSPVEKLIGAYKQSKYWAEQEALTAAQ-QGQDIVIVN 175 +Y SS + V G ++ S V+ + Y +K E A T + G + Sbjct: 121 LLYASSSS---VYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 176 PSTPIGPW 183 T GPW Sbjct: 178 FFTVYGPW 185
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 31.5 bits (71), Expect = 0.008 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 8/95 (8%) Query: 254 RDVKQGASTLTQQL---ARSLFSEVGRENTAGRKIREMFVALKLEAVY----SKDDILKA 306 R KQ A Q + A LFS+ G +T+ +I + + A+Y K D+ Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKA-AGVTRGAIYWHFKDKSDLFSE 61 Query: 307 YLNRVYLGAGNYGFEDAAQFYFDKSAQDLDVGEAA 341 G E A+F D + ++ Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHV 96
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 9e-05 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 370 DRLAQLQAKPPLLEVQNLTVSYGQGGLFGKKSVFKAVNDVSFQVYPGE-TLGLVGESGCG 428 + + A+P + S L G+ + + + V ++ + TL + GESG G Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTG 172 Query: 429 KSTLARALLRLTPIQTGRIIFDGQNVAALPE 459 K +ARAL + G F N+AA+P Sbjct: 173 KELVARALHDYGKRRNGP--FVAINMAAIPR 201
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 38.6 bits (90), Expect = 4e-06 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Query: 3 IALFGTSADPPTLAHRAILIWLAQHFDQVAVWAADNPFKQGPNPETGHWASLGDRQAMLK 62 A++ S DP T H I+ + FDQV V NP KQ S+ +R + Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQP-------MFSVQERLEQIA 54 Query: 63 LLVEDVQKDYATVQIWEDL 81 + + A V +E L Sbjct: 55 KAIAHLPN--AQVDSFEGL 71
>PF07269#Transport secretion system IV, VirB7 protein Length = 55 Score = 25.8 bits (56), Expect = 0.017 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%) Query: 33 RTTDMRAVCNGIYYQLKTGCQWAMLPHDFPPSST 66 +T D A C G + L G +W P D P Sbjct: 16 QTNDKPASCKGPIFPLNVG-RWQPAPSDLHPGMA 48
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 25.7 bits (56), Expect = 0.029 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 47 RFRILKEATNEQLAKVKVEVNGYALRWEELDEDIT-VPGVVAG 88 R + N + ++N YA + L++ I+ + GV AG Sbjct: 149 YLRDQDKQVNIAIGASVDQINNYAKQIASLNDQISRLTGVGAG 191
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 91.2 bits (226), Expect = 2e-22 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 30/173 (17%) Query: 170 RGTGSGFIVSNDGKIFTNAHVVDGADEVTVTLK------------DGRSFPGRVMGSDPS 217 SG +V + TN HVVD LK +G ++ Sbjct: 101 TFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 218 TDVAVVKIEA-------GDLPTVA-LGDSDHLQVGEWAIAIGNPLGLDNTVTTGILSATG 269 D+A+VK G++ A + ++ QV + G P + + G Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVAT---MWESKG 216 Query: 270 RRSADIGVPDKRVEFIQTDAAINPGNSGGPLLNADGQVIGMNTAIIQNAQGIG 322 + + + E +Q D + GNSG P+ N +VIG++ + N Sbjct: 217 K------ITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGA 263
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 121 bits (305), Expect = 7e-32 Identities = 89/464 (19%), Positives = 169/464 (36%), Gaps = 78/464 (16%) Query: 1 MPMAMPLVQSMKKPLPILLSLLGLGILVVGIFAYRSAYGPSRQSELDKYTVMATESPLEV 60 +P + L+++ P L++ +G LV+ +++ +E+ Sbjct: 42 LPAHLELIETPVSRRPRLVAYFIMGFLVIAF-------------------ILSVLGQVEI 82 Query: 61 EIKASGTVQPQ-QTVNISPKAPGRLVRLFVEQGDVVKKGDRIAVMENQEFFADGKQSEAR 119 A+G + ++ I P + + V++G+ V+KGD + + AD ++++ Sbjct: 83 VATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSS 142 Query: 120 LREA-------------IARYEQARIRIPAEIDQLRAQVNQGRTRIAQAQSQLASAQARL 166 L +A I + +++P E + + + Q ++ Q + Sbjct: 143 LLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQK 202 Query: 167 EQAQSRI---PSNIDQLRAQVASAESRLKLAENRRNRNQSLLQEGAITQDQYDELSNEFL 223 Q + + + + A++ E+ ++ ++R + SLL + AI + E N+++ Sbjct: 203 YQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYV 262 Query: 224 NAQAGLFEAQSRLNNARTTASPEVGQIEQEIVQLQGAIAEAEQGVAAQMAQLRERQGTAE 283 A L +S+L QIE EI+ + Q + Sbjct: 263 EAVNELRVYKSQL-----------EQIESEILSAKEEYQLVTQ----------LFKNEIL 301 Query: 284 TELATLQAAASQAEAQLMRSKIAYEDTFIVAPFDGIITQ-KFATVGSFVTPTTSASSTAS 342 +L +L +++ + + I AP + Q K T G VT Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE------- 354 Query: 343 ATSTSIVALAQGLEVVARVPEVDISALRPGQMVDIVADAFPNETF---TGRVIRVAPEAI 399 T IV LEV A V DI + GQ I +AFP + G+V + +AI Sbjct: 355 -TLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAI 413 Query: 400 VENNV-TSFEVTIGL-------ATGQEQLRSKMNVDVVFK-GDR 434 + + F V I + L S M V K G R Sbjct: 414 EDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMR 457
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 110 bits (276), Expect = 3e-29 Identities = 73/260 (28%), Positives = 110/260 (42%), Gaps = 15/260 (5%) Query: 403 NPPMFAGEVALVTGGASGIGKASVAQLLKQGAAVIALDIQPNISELHNRPDFL------G 456 N G++A +TG A GIG+A L QGA + A+D P E Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 457 IQCDLTDANAFKQALEQGIAQFGGLDMLVLNAGIFPVARAIAELSTLEWQKVLNINLDAN 516 D+ D+ A + + + G +D+LV AG+ I LS EW+ ++N Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGV 120 Query: 517 LTLLRECYPLLKLAPKGGRVVVIGSKNVTAPGPGLAAYSASKAALNQLMRVASLEWAKDN 576 R + + G +V +GS P +AAY++SKAA + LE A+ N Sbjct: 121 FNASRSVSKYMM-DRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 577 IRLNTIHPNGVFDTG----FWTEEVLEARAKHYGLTVEEYKGNNLLKVEVTSQDVAELVT 632 IR N + P G +T W +E + ++E +K LK D+A+ V Sbjct: 180 IRCNIVSP-GSTETDMQWSLWADE--NGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 633 AMASPLFGKITGAQLPLDGG 652 + S G IT L +DGG Sbjct: 237 FLVSGQAGHITMHNLCVDGG 256
>PF06580#Sensor histidine kinase Length = 349 Score = 42.2 bits (99), Expect = 7e-06 Identities = 40/223 (17%), Positives = 83/223 (37%), Gaps = 42/223 (18%) Query: 617 IAIQQATLYEQAQQELASKNQLFVQLTNELEQKKVLLKEIHHRVK-----NNLQIMSSLL 671 Y+QA+ + Q ++ L + ++ N L + +L+ Sbjct: 136 FGWHFFKNYKQAEID---------QWKMASMAQEAQLMALKAQINPHFMFNALNNIRALI 186 Query: 672 YLQFSKASPAIQQLSEEYQNRIQSMALIHEQLYRSEDLANIDFSQYLKNLTHNICQS-YG 730 +KA + LSE + ++ L +++L +D YL + + Sbjct: 187 LEDPTKAREMLTSLSELMRYSLRYSNARQVSL--ADELTVVD--SYL-----QLASIQFE 237 Query: 731 CNTDSIKIKLLVE----QVKVPLEQSIPLGLIIQELVSNALKHAFPTTE--GEISIKFTS 784 D ++ + + V+VP +++Q LV N +KH G+I +K T Sbjct: 238 ---DRLQFENQINPAIMDVQVP-------PMLVQTLVENGIKHGIAQLPQGGKILLKGTK 287 Query: 785 MNSHYSLQVWDNGVGISRDIDLENTDSLGMQLIYSLTEQLQGE 827 N +L+V + G ++ + + G+Q + + L G Sbjct: 288 DNGTVTLEVENTGSLALKNT--KESTGTGLQNVRERLQMLYGT 328
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.4 bits (227), Expect = 2e-23 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 5/168 (2%) Query: 2 ANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61 A IL+ DD+ A+ L++AL G+ + + T AG DL++ D ++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121 ++ +I+ PVL ++A++T + + G DYL KPF+L EL+ + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 HGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALL 169 + E L+ + ++ + R+ ++ + + Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVL-----ARLMQTDLTLMIT 166
>cloacin#Cloacin signature. Length = 551 Score = 32.0 bits (72), Expect = 0.008 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 9/81 (11%) Query: 358 GPTSLSLGYLASTG------NNPSSGGSVTNPATGNNYDFSSGGNGLFNGGYSALAQITT 411 GPT L +G AS G NNP GGS + G +GG +GG S + Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Query: 412 NIFDRVSLGFTYVNAYTTPDA 432 + V+ GF A +TP A Sbjct: 83 AVAAPVAFGFP---ALSTPGA 100
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 33.9 bits (77), Expect = 0.002 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 10/102 (9%) Query: 295 AQQWCDQAENKEEMCQILSKREWFKVPFEDIIDRSKGIYNFGNGQETFEDQEIMQKYWVD 354 + + + ++ M +L+ + VP + N E D + + D Sbjct: 624 SSDYGLNDKYQDYMDSLLNNIDNLDVPLVSDEYVNGHEAKDIN--EITNDIKEVSNI-KD 680 Query: 355 NASYPYKSHDQWFLTENIRWGYLPAST-----DTKAIVDKVN 391 +S KS Q+F T ++R Y+ + D K + K+N Sbjct: 681 LSSNVEKS--QFFTTYDMRGTYVGGRSQGEENDWKDMNSKLN 720
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 28.5 bits (64), Expect = 0.010 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 31 ELVDLFNQQDQLTVTAIAGAREDLAAAIEIISDALAKGGRLFYIGAGT 78 +L+ + +LT A A + A +S LAKG ++ IG G Sbjct: 6 DLIAKVAEATELTKKDSAAA---VDAVFSAVSSYLAKGEKVQLIGFGN 50
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 97.0 bits (241), Expect = 2e-22 Identities = 69/337 (20%), Positives = 107/337 (31%), Gaps = 42/337 (12%) Query: 1808 FIVGLTNDLNFGKNGAAYVVFGGRNLGSSGSFNLSNLNGGNGF-TIQQAPGSEDLVGYSI 1866 + +N N G F + G + N G G + A +ED +SI Sbjct: 166 YNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAEDSYQFSI 225 Query: 1867 AGGGDINGDGYDDLLVSAPSAGVGNPDGTNNGDTEGTIYTLFGSS-ILGVGGTVDLSNLN 1925 N G D G+ G D I L+G++ G +V N N Sbjct: 226 MSYWGENETGAD---------YNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSN 276 Query: 1926 GSNGFETVGAQAYSFAGSFVGG----LSDVNGDGYADLGIGAQGDNSQGVSGLAYNVFGG 1981 F T + + S D +G +G S V GL NV Sbjct: 277 TDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSD-VGGLKGNVSIA 335 Query: 1982 DFTQNVTYVGTIDNDIFSATSLATSSAPHIMNGGQGNDILQSAGVNVSAGGRVVMNGGQG 2041 +G NDI +SA +I+ GG GND+L GG G Sbjct: 336 HGVTIENAIGGSGNDILVG-----NSADNILQGGAGNDVLY---------------GGAG 375 Query: 2042 NDLLSIGSLNFERLDGGSGKDILQLNS-----YILSSNNLDLTDTTIGSRIRGIEVIDLG 2096 D L G+ + GSG+D + + +DL+ ++ ++ G Sbjct: 376 ADTLYGGAGR-DTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTG 434 Query: 2097 INNRVTLNVETLTALSDTTNTFTVLGHNSFIVASDFQ 2133 V L + ++++ F+V Q Sbjct: 435 KGQEVMLQWDAANSITNLWLHEAGHSSVDFLVRIVGQ 471 Score = 83.1 bits (205), Expect = 6e-18 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 2199 NIIFALGGDDLVDLSLAQGNNQVYGGPGNDRLIAGQ--NDSLFGGLGNDILDTSGDRGTN 2256 ++ GG D D S N ++ G+ + G N S+ G+ + G G + Sbjct: 293 FSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAI--GGSGND 350 Query: 2257 NLNGGDGDDTFFLGQGDKAFGNDGNDRFFMRGSGRNLISGGAGADHFWIADID--FTNSF 2314 L G D+ G GND + G+G + + GGAG D F ++ Sbjct: 351 ILVGNSADNIL--------QGGAGNDVLYG-GAGADTLYGGAGRDTFVYGSGQDSTVAAY 401 Query: 2315 NAILDFELGIDTIGLKGL----ASRQDDLKLIQYGTDVLIALGDE 2355 + I DF+ GID I L + G +V++ Sbjct: 402 DWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAA 446
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 63.5 bits (154), Expect = 4e-14 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 17/195 (8%) Query: 7 ISNKTVLVTGANRGIGKVLVESFLEHGAAKVYAA------VRKLESAAFLVDKYGNKIVP 60 I K +TGA +GIG+ + + GA + A + K+ S+ ++ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGA-HIAAVDYNPEKLEKVVSSLKAEARHAEAFP- 63 Query: 61 ILIDLADPESIAA-----AAQTATDVEIVVNNAGVQKVANPLAEEAIACLKFEMETNVYG 115 D+ D +I + ++I+VN AGV + + + + N G Sbjct: 64 --ADVRDSAAIDEITARIEREMGP-IDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTG 119 Query: 116 LISMAQAFAPVLKANGGGAFVQLNSVVSLKSFCNVATYSASKAAAYSITQALREVLAGQG 175 + + +++ + + G+ V + S + ++A Y++SKAAA T+ L LA Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 176 TLVQSVHPGPIATEM 190 V PG T+M Sbjct: 180 IRCNIVSPGSTETDM 194
>PHPHLIPASEA1#Bacterial phospholipase A1 protein signature. Length = 289 Score = 28.4 bits (63), Expect = 0.040 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 87 WYRYGYTEGVPRILDLLDKYKIKITSHMSGRTVEMYPDRAKEIVQRGHEAAAHGWDWD 144 WY G T+ P I + Y++KI H+ G V + G+ A G + Sbjct: 196 WYVVGNTDDNPDITKYMGYYQLKIGYHL-GDAVLSAKGQYN--WNTGYGGAELGLSYP 250
>PF06580#Sensor histidine kinase Length = 349 Score = 26.4 bits (58), Expect = 0.044 Identities = 10/38 (26%), Positives = 19/38 (50%) Query: 44 LATNIINYGYANAPGHNQISIQVEADDCQLKVTMVDTG 81 L N I +G A P +I ++ D+ + + + +TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 66.8 bits (163), Expect = 1e-16 Identities = 27/69 (39%), Positives = 43/69 (62%) Query: 20 RQRGFTLLELLVVVIILGVLGAMTLPNLFSQIGKAREAEAKQILSAIGQAQQSYFFEKAS 79 +QRGFTLLE++VV++I+GVL ++ +PNL KA + +A + A+ A Y + Sbjct: 6 KQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKLDNHH 65 Query: 80 FAESNQALE 88 + +NQ LE Sbjct: 66 YPTTNQGLE 74
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 29.1 bits (65), Expect = 0.034 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 229 TATDVTLQFREQEDVIP-VDLVLWTV---GTTVSPLIRNLALPHNDQGQLRTNAQLQVEG 284 +A+D T+ +R+ E P V +L V T + N +P Q R +AQ +VE Sbjct: 193 SASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIP---QAATRASAQARVEA 249 Query: 285 --KTNIFALGDGAEGRDASGQLI 305 N + D E +LI Sbjct: 250 DPSLNAIIVRDSPERMPMYQRLI 272
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 43.4 bits (102), Expect = 5e-08 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 72 EEAHITLLAVAQAHRRQGLGKILLQNLLATAEHRQLERATLEVRASNQAAMDLYHQFGFQ 131 A I +AVA+ +R++G+G LL + A+ LE + N +A Y + F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 132 LAGCRKRYYP----DGEDAL 147 + Y E A+ Sbjct: 148 IGAVDTMLYSNFPTANEIAI 167
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 32.5 bits (74), Expect = 0.002 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Query: 188 EQRNMLTTNAVARLLHSIIGGVAVSSTRSQQMMQLLKRDLTAAPAPLGEDNQITGFLGEP 247 + R+ T ++A L ++ +S+ +Q++Q + D A I L Sbjct: 172 DARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVA-------GPLIRSVL--- 221 Query: 248 LPKDAQMWSKAGWTSQ-VRHDCAYIEIPHQSPYLLVVFTENSA 289 P + K G + R A + +++ ++V++ ++ Sbjct: 222 -PAGWFIADKTGAGERGARGIVALLGPNNKAERIVVIYLRDTP 263
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 39.5 bits (92), Expect = 4e-06 Identities = 16/89 (17%), Positives = 28/89 (31%) Query: 76 TQLAPEQFQTWFILGTLYLQQEEVEPGITVLKKAEALAPEEAGIKFTLGNAYFQKGQYDQ 135 +++ + + + L Q + E V + L ++ LG GQYD Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 136 AVEVLLAGLAQRPDTPAALFDLGNAYLKL 164 A+ G P F L+ Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQK 117
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.012 Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 10/85 (11%) Query: 89 EEIQQTTEAR-------NRRAEEEQRRSEDRARTVAREAKQDREREEELARAENERAEAR 141 + QTTE + +A+ E ++++ + ++ + + + E +AE R Sbjct: 1092 TKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDP 1151 Query: 142 D---RRAEAREREARRVGQEARRTR 163 + +++ Q A+ T Sbjct: 1152 TVNIKEPQSQTNTTADTEQPAKETS 1176
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 31.0 bits (70), Expect = 0.003 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 190 LTVESARHNRHLNQIHPDNLVINEGSVPELEQLIAEPVD 228 LTVE R + ++ L + +GSV L+ L EP+D Sbjct: 64 LTVELGRTRMTIKEL----LRLTQGSVVALDGLAGEPLD 98
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.020 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 15/69 (21%) Query: 155 YLTGLMDHWRQVMVVDP--------EFARFVFQAALAKIHTP---WGAAWAWLLLALLLG 203 Y + W+ +D EF A L I TP A+ ++ L+ Sbjct: 15 YKLVWSETWKIRKQLDTPVREKDENEF----LPAHLELIETPVSRRPRLVAYFIMGFLVI 70 Query: 204 LGGWALQRP 212 ++ Sbjct: 71 AFILSVLGQ 79
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 2e-29 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 25/258 (9%) Query: 1 MLSLGLEDKVIVVTGGNRGIGAAIVKLLQEMGAKVAFTD------------LATDGGNTE 48 M + G+E K+ +TG +GIG A+ + L GA +A D L + + E Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 49 ALGVVANVTDLESMTAAAAEITDKLGPVYGVVANAGITKDNFFPKLTPADWDAVLNVNLK 108 A A+V D ++ A I ++GP+ +V AG+ + L+ +W+A +VN Sbjct: 61 AFP--ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNST 118 Query: 109 GVAYSIKPFIEGMYERKAGSIVAISSISGERGNVGQTNYSATKAGVIGMMKSLAREGARY 168 GV + + + M +R++GSIV + S Y+++KA + K L E A Y Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 169 GVRANAVAPGFIDTEM--TLAIREDIREKITK--------EIPFRRFGKPEEIAWAVAFL 218 +R N V+PG +T+M +L E+ E++ K IP ++ KP +IA AV FL Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 219 LSPVASSYVTGEVLRVNG 236 +S A ++T L V+G Sbjct: 239 VSGQA-GHITMHNLCVDG 255
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 27.0 bits (59), Expect = 0.023 Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 26 KIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62 K Y I K S RW V+ + ++R + L W K Sbjct: 443 KAYTIEKDSSIRWNQLVEKPISPLQRSNLSLSWLDFK 479
>adhesinb#Adhesin B signature. Length = 310 Score = 32.1 bits (73), Expect = 0.002 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 197 SGQTSEPHRWLQCVRYPLNHEPAWGNLIFITQGNESKFEQTLAQYLEKSKHQDRWEKLKQ 256 +PH WL + + L N+ +E+ L Y+EK D+ K+ Sbjct: 133 EKGKEDPHAWLNLENGIIYAQNIAKRLSEKDPANKETYEKNLKAYVEKLSALDKE--AKE 190 Query: 257 IFKKLPG 263 F +PG Sbjct: 191 KFNNIPG 197
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 105 bits (264), Expect = 1e-29 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 11/249 (4%) Query: 4 VVLITGIAGGIGQATAELFAQQGWLVTGIDRQADPKCPYIDHYQ---------QADCGDP 54 + ITG A GIG+A A A QG + +D + + + AD D Sbjct: 10 IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69 Query: 55 KALAAAFDNLVGETQNLHSLINNVALQICQPILETSLDDWDQVMAVNLRAAF-LLAKMSH 113 A+ + E + L+N + I S ++W+ +VN F +S Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 114 PYLQQTHGSIVNISSVHALATSANIASYAASKGGLIALTRAMAIEWAADQIRVNALLPGA 173 + + GSIV + S A ++A+YA+SK + T+ + +E A IR N + PG+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 174 VNTPMLREGLSRGHLVEQSPQHQLQELGSKTVMGRVGQPSEIAQAIAFLADNEQSSFMTG 233 T M + + EQ + L+ + + ++ +PS+IA A+ FL + Q+ +T Sbjct: 190 TETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV-SGQAGHITM 248 Query: 234 QTITIDGGA 242 + +DGGA Sbjct: 249 HNLCVDGGA 257
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1133 bits (2933), Expect = 0.0 Identities = 440/1033 (42%), Positives = 654/1033 (63%), Gaps = 8/1033 (0%) Query: 3 VDFFIKRPVFSSVCAIIILLVGTISIFSLPIAQFPEVAPTTIQVSSNYSGANAEVVERAV 62 +FFI+RP+F+ V AII+++ G ++I LP+AQ+P +AP + VS+NY GA+A+ V+ V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 63 TDILERQINGVQGMRYISSTSSNDGTSSITVTFDRSQNKDIAAVDVQNRVALAEPQLPEA 122 T ++E+ +NG+ + Y+SSTS + G+ +IT+TF + DIA V VQN++ LA P LP+ Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 VRRTGIRVNKESNALLLGIGITSPDGEYDNVFLSNYADRYLVDPIRRLEGVGDVRIFGER 182 V++ GI V K S++ L+ G S + +S+Y + D + RL GVGDV++FG + Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ 181 Query: 183 LYAMRLWVDPMKLAAQQLTMADLSRALQEQNLQVGAGQIGAEPAPPGQEYQLDLLASSQL 242 YAMR+W+D L +LT D+ L+ QN Q+ AGQ+G PA PGQ+ ++A ++ Sbjct: 182 -YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 243 VEVKDFEDLIVKSGASGSVVRFKDIGRVELGAQNYNSFLRFRGDEAVGLGIYQLLDSNAL 302 ++F + ++ + GSVVR KD+ RVELG +NYN R G A GLGI +NAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 303 EVARLVKDEMARLAQNFPEGIEYSVAFDTTEFVQESLSEVVETLLIAVVLVILVILVFLQ 362 + A+ +K ++A L FP+G++ +DTT FVQ S+ EVV+TL A++LV LV+ +FLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 363 DWRSALIPALTIPLALIGTFAFVKVFNFSINSLTLFGLTLATGLVVDDAIIVVEQISRFI 422 + R+ LIP + +P+ L+GTFA + F +SIN+LT+FG+ LA GL+VDDAI+VVE + R + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 423 KVKHEDPQEAAQEAMGELTGAVIATSLVLMAVFIPVAFFPGTTGALYQQFALTIAFSILL 482 P+EA +++M ++ GA++ ++VL AVFIP+AFF G+TGA+Y+QF++TI ++ L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 STFLALTLTPSLCALLLRE-GQEPPAFIAGFFNWFNRVLDIIKNGYGNVLGKLVNLRAWV 541 S +AL LTP+LCA LL+ E GFF WFN D N Y N +GK++ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 542 IGVFVLLLGATAWLYVTVPTAFLPEEDQGYFITIIQAPQGVSLQYTSRVMAQVEKELLA- 600 + ++ L++ L++ +P++FLPEEDQG F+T+IQ P G + + T +V+ QV L Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 601 -VPEVTATFAVGGFSFSGNSPNQGIIFTRLKPWGERTAPNQSVQAIIGQMFGKFSQIPEA 659 V + F V GFSFSG + N G+ F LKPW ER S +A+I + + +I + Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 660 NIIPINPPPIRGLGQFGGFDFQLQDLRVNSELDTMVGTMGEILGAANQNPA-LTRVFSTF 718 +IP N P I LG GFDF+L D + D + ++LG A Q+PA L V Sbjct: 661 FVIPFNMPAIVELGTATGFDFELID-QAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 719 QANNPQLIVNVNRNKAKSLGVPVDQIFQTMETALGSSYVNDFVLQGRTYRVYLQADEQFR 778 + Q + V++ KA++LGV + I QT+ TALG +YVNDF+ +GR ++Y+QAD +FR Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 779 SSPEDINSLYVRSESGTMIPMANLVTVTQGVGAPIITHYNLFRSIAITGSANFGVSTGQA 838 PED++ LYVRS +G M+P + T G+P + YN S+ I G A G S+G A Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 839 MNAMAAIARQVMPPGFDFQWSGISLEEMGSQGQAPLIFGLGLLFVFLVLAAQYENYIDPV 898 M M +A + +P G + W+G+S +E S QAP + + + VFL LAA YE++ PV Sbjct: 840 MALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 899 IILLSVPLAILGALTAQSLRGFPNDVYCQIGLVMLIGLSSKNAILIVEFANQL-RAEGYP 957 ++L VPL I+G L A +L NDVY +GL+ IGLS+KNAILIVEFA L EG Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 958 IAKAALEASKDRLRPILMTALSTLFGIFPLAIATGAGAGSRQALGTAVFGGMLVATFLSL 1017 + +A L A + RLRPILMT+L+ + G+ PLAI+ GAG+G++ A+G V GGM+ AT L++ Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1018 FVVPVLYIVVKTI 1030 F VPV ++V++ Sbjct: 1019 FFVPVFFVVIRRC 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 4e-16 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 7/122 (5%) Query: 29 PRLHILLIEDNLAEARLLQEILKGSPKENFAFNHVQRLGDALTVLAQGEKFDIILLDLTL 88 IL+ +D+ A +L + L + + ++ +A G+ D+++ D+ + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAA---TLWRWIAAGD-GDLVVTDVVM 57 Query: 89 PDSQGLNSLPKLQSHPQNLPIIVLTHYQDEELALEAVRQGAQDYLVK---RDVSLDILLR 145 PD + LP+++ +LP++V++ A++A +GA DYL K + I+ R Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 146 SL 147 +L Sbjct: 118 AL 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 2e-22 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 7 TLFIVDDTPDNVRLLANLLSAHGYRIRKALNANFALKSIEQSPPDLILLDVNMPTMNGYE 66 T+ + DD +L LS GY +R NA + I DL++ DV MP N ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 67 MCARLKSNPHTQEIPIIFISALDNVLDKVKAFNLGGADYITKPFQMEEVLARIEHQLLLQ 126 + R+K ++P++ +SA + + +KA G DY+ KPF + E++ I L Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 127 QQKHQ 131 +++ Sbjct: 123 KRRPS 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.2 bits (190), Expect = 4e-17 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 2/138 (1%) Query: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478 +LV DD R +L Q L+ G+ V+ N + +++ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVA 538 +IK ++ ++A + G D+L KPF ELI ++ + LA Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 539 LPSQGQPPASPLRPFPVI 556 + P++ Sbjct: 123 KRRPSKLEDDSQDGMPLV 140
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 49.6 bits (118), Expect = 5e-10 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%) Query: 36 LPNYVKANLPAELAKRPSAHIILAFVDSKPAGLLVCLEGFSTFACKPLLNIHDVIVSLPY 95 Y ++ + L ++++ G + ++ +A I D+ V+ Y Sbjct: 47 FKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYA-----LIEDIAVAKDY 101 Query: 96 RGKGLSKLMLQKAEAIALDLGCCKLTLEVLEGNHVAQSAYRSFGF--GNYELDPQMG--- 150 R KG+ +L KA A + C L LE + N A Y F G + Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFPT 161 Query: 151 ---KALFW 155 A+FW Sbjct: 162 ANEIAIFW 169
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 44.1 bits (104), Expect = 1e-07 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 6/131 (4%) Query: 57 EQKLLEGFDELESGSPLKAIAIFTQVIDTDDQNADAYNLRGVAYMVIEQYTDALADFDQA 116 ++ L L+ G + + + + +Y DA F Sbjct: 9 QEYQLAMESFLKGGGTIA------MLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQAL 62 Query: 117 IALNPKDPAIYFNRANVHGVLNNYQGAIDDCSQGILLDPQDVDLLICRGQAQLGLEQPRQ 176 L+ D + + Y AI S G ++D ++ + L + + Sbjct: 63 CVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAE 122 Query: 177 AIPDFDRAIEL 187 A A EL Sbjct: 123 AESGLFLAQEL 133 Score = 41.5 bits (97), Expect = 9e-07 Identities = 17/88 (19%), Positives = 33/88 (37%) Query: 56 IEQKLLEGFDELESGSPLKAIAIFTQVIDTDDQNADAYNLRGVAYMVIEQYTDALADFDQ 115 +EQ F++ +SG A +F + D ++ + G + QY A+ + Sbjct: 36 LEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 95 Query: 116 AIALNPKDPAIYFNRANVHGVLNNYQGA 143 ++ K+P F+ A A Sbjct: 96 GAIMDIKEPRFPFHAAECLLQKGELAEA 123 Score = 41.1 bits (96), Expect = 1e-06 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 12/166 (7%) Query: 101 MVIEQYTDALADFDQAIALNPKDPAIYFNRANVHGVLNNYQGAIDDCSQGILLDPQDVDL 160 + +E + ++ ++ A Y+ A +LD D Sbjct: 13 LAMESFLKGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRF 72 Query: 161 LICRGQAQLGLEQPRQAIPDFDRAIELDPRSEEAHYFRGLAYAMVNNYERALADLNRTIR 220 + G + + Q AI + +D + + A + L Sbjct: 73 FLGLGACRQAMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQE 132 Query: 221 LNPYNADAFILRAGIRSEQGEVEESLEDMIQAINLL-DRQGESERA 265 L ++E E+ + M++AI L + + E Sbjct: 133 L-----------IADKTEFKELSTRVSSMLEAIKLKKEMEHECVDN 167
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 3e-07 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 7 TIVIVDEDPVFRLGLITVLGRETGVQVLGEGETLDDLRQQLETLAPSILLIDPQFPRRSQ 66 TI++ D+D R L L R G V L + + +++ D P + Sbjct: 5 TILVADDDAAIRTVLNQALSRA-GYDVRITS-NAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 67 SAWPLLRQLSSAYPQVKICLLTASLEYDQLLAAKTQGIAAYFPKGTAIADLV 118 LL ++ A P + + +++A + + A +G Y PK + +L+ Sbjct: 63 FD--LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.6 bits (84), Expect = 3e-04 Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 5/188 (2%) Query: 361 EDELGILAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENT 420 + +L + + +LE + L + L A + +++ Sbjct: 122 KADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKT- 180 Query: 421 VKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLD 480 E A+ EA A K++ A + + E ++ Sbjct: 181 -LEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL---EAEKAALAARKADLEKALEG 236 Query: 481 KILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEV 540 + S + + + +EA + EL I L Sbjct: 237 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAE 296 Query: 541 EISLESEE 548 + LE + Sbjct: 297 KADLEHQS 304 Score = 29.6 bits (66), Expect = 0.044 Identities = 10/69 (14%), Positives = 19/69 (27%) Query: 376 NELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENTVKALELASSEAEAAN 435 +LE + LE Q +L A + +++ +E Sbjct: 242 TADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLE 301 Query: 436 ATKSIFLAN 444 + AN Sbjct: 302 HQSQVLNAN 310
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 8e-19 Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 3 SMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIID 62 + A +L+ +D+ R +L++ L R GY+V I + + L++ D+ +P + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKME 119 + +IK +P++ ++A +A G DY KP ++ L+ + Sbjct: 62 AFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 101 bits (252), Expect = 8e-25 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 6/170 (3%) Query: 189 KGKILVVDDNPSNLDLFFQHLTRKGHAVTTCLSAKDVLGLLQSQNYDLILLDLLMPETNG 248 ILV DD+ + + Q L+R G+ V +A + + + + DL++ D++MP+ N Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 249 DQFLEYLKTSVEFQHIPVIIVSALDEFESIIRCIEMGAEDFLPKPFDP---VLLKARIGS 305 L +K +PV+++SA + F + I+ E GA D+LPKPFD + + R + Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 306 SLEKKRLRDQEKLYTQQ-VEGLSEMMAKELEKGRQMQKNFLPAHLLTRSG 354 +++ + ++ + G S M + ++ + L + SG Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESG 170
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 31.2 bits (70), Expect = 0.016 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 6/98 (6%) Query: 513 EEEGELRQYPGNYTLYLEYKKAEQVRANQEETELKKSQPVASVTTKVSQDSSSKKLSYKE 572 + EL + + A+ E+ L+ + ++V +++ + L Sbjct: 260 ARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVL-NANRQSL---- 314 Query: 573 KREYEQLEQQIPQLEEEKAQLEAQLYQSSNGNFTELQN 610 +R+ + + QLE E +LE Q + S + L+ Sbjct: 315 RRDLDASREAKKQLEAEHQKLEEQN-KISEASRQSLRR 351 Score = 30.0 bits (67), Expect = 0.030 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 3/93 (3%) Query: 532 KKAEQVRANQEETELKKSQPVASVTTKVSQDSSSKKLSYKEKREYEQLEQQIPQLEEEKA 591 +K + + E K + A + S + + + LE + L KA Sbjct: 99 EKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 158 Query: 592 QLEAQLYQSSNGN---FTELQNLTERLANLSES 621 LE L + N + +++ L A L Sbjct: 159 DLEKALEGAMNFSTADSAKIKTLEAEKAALEAR 191
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 44.1 bits (104), Expect = 2e-07 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 2/111 (1%) Query: 253 LDQSLALNGNLFNGFYNRGLAYYKMGQIKKAIKDFSDALIVKPTFVWAYINR-GVAYYDL 311 + ++ + Y+ Y+ G+ + A K F AL V + + G + Sbjct: 25 IAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQ-ALCVLDHYDSRFFLGLGACRQAM 83 Query: 312 GCHQKSLDDYNQALVIDSKCKAAYVNRSIVFRELGNHEKALEDLQKAQTII 362 G + ++ Y+ ++D K + + + G +A L AQ +I Sbjct: 84 GQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELI 134 Score = 31.8 bits (72), Expect = 0.002 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 2/101 (1%) Query: 231 NTLYILGSSFLSLEKYQSAIDYLDQSLALNGNLFNGFYNRGLAYYKMGQIKKAIKDFSDA 290 LY L + KY+ A L+ F G MGQ AI +S Sbjct: 37 EQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 96 Query: 291 LIVKPTFVWAYINRGVAYYDLGCHQKSLD--DYNQALVIDS 329 I+ + G ++ Q L+ D Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADK 137
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.3 bits (63), Expect = 0.028 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 152 AELIRVIRQIAQCRSRLVAIHRDMAELRQTELFELMEQVEQARQSGQDLLTEMAKHLDEQ 211 + + + ++ +S+L I ++ ++ + V Q ++ ++L ++ + D Sbjct: 259 NKYVEAVNELRVYKSQLEQIESEILSAKEE-----YQLVTQLFKN--EILDKLRQTTD-N 310 Query: 212 IAEAQERLQDLKEQLG 227 I L +E+ Sbjct: 311 IGLLTLELAKNEERQQ 326
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.8 bits (69), Expect = 0.012 Identities = 17/62 (27%), Positives = 23/62 (37%) Query: 15 LPNNPAGRPASSIRQESMAPETQFMPAPPSIGQPQPQHRPPTPNLPTSPPAPSHANLGRS 74 L N G+ + + AP+ P P PQPQ P P P + AN + Sbjct: 556 LAANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVN 615 Query: 75 PG 76 G Sbjct: 616 TG 617
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 0.002 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 17/97 (17%) Query: 161 ESLEKYGRDLTELAREGK--------LDPVIGRDEEVRRTIQILSRRTKNN-PVLI-GEP 210 E + GR L E R P++GR ++ ++L+R + + ++I GE Sbjct: 110 ELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGES 169 Query: 211 GVGKTAIAEGLAQRIINHDVPESLRDRKLISLDMGAL 247 G GK +A L HD + R+ ++++M A+ Sbjct: 170 GTGKELVARAL------HDYGKR-RNGPFVAINMAAI 199 Score = 32.9 bits (75), Expect = 0.007 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 22/157 (14%) Query: 576 VIGQDEAVTAVAEAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAKNLFDTEEAL 635 ++G+ A+ + + R +D + + G +G GK +A+AL Sbjct: 139 LVGRSAAMQEIYRVLAR--LMQTD-----LTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 636 VRIDMSEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRPYSV-------ILFDEIEKA 688 V I+M+ S L G E G T A R + DEI Sbjct: 192 VAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 689 HGDVFNVMLQILDDGRLTDAQGHVVDFKNTIIIMTSN 725 D +L++L G T G + I+ +N Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 291 bits (746), Expect = 1e-97 Identities = 108/401 (26%), Positives = 200/401 (49%), Gaps = 5/401 (1%) Query: 1 MATFVAQVKDRKGKTTKAKVEAMSPEQARTILRQQYAAIGPIKPAGGEINLEFLENLL-- 58 MA + Q D +GK + EA S QAR +LR++ + G+ L Sbjct: 1 MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60 Query: 59 --NNVSVKDKAVFSRQFSVMINAGVAIVRCLGVLSEQCPNPKLKRALTGISGEVQQGTNL 116 +S D A+ +RQ + ++ A + + L +++Q P L + + + +V +G +L Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120 Query: 117 SEAMGKYPECFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDMARLQNQIKSAMAYPVAVG 176 ++AM +P F+ LY +MV AGET G LD VLNRL+ E +++++I+ AM YP + Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180 Query: 177 FLAVVAFLGMTIFLIPVFAGIFDDLGGELPALTKFMVGLSNFLRSPMAVIPVIVIVVAVF 236 +A+ + ++P F + LP T+ ++G+S+ +R+ + ++ ++ Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWM-LLALLAGFM 239 Query: 237 LFKKYYGTYAGRRQVDAVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVCN 296 F+ R +L LPL G + AR+ R L S VP++Q++ I + Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299 Query: 297 TVPNKVISDAIAGAISEIQQGGMMSLALQQSKVFPSLAIQMISIGEETGELDAMMMKVAD 356 + N ++ A +++G + AL+Q+ +FP + MI+ GE +GELD+M+ + AD Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359 Query: 357 FYEDEVEQTVKALTSIIEPAMMVLIAGMVGTILLSMYLPMF 397 + E + + EP ++V +A +V I+L++ P+ Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPIL 400 Score = 72.2 bits (177), Expect = 5e-16 Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 266 EKTAVARFCRVFGTLTRSGVPIIQSLEIVCNTVPNKVISDAIAGAISEIQQGGMMSLALQ 325 + +A R TL + +P+ ++L+ V +S +A S++ +G ++ A++ Sbjct: 66 STSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMK 125 Query: 326 -QSKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGM 384 F L M++ GE +G LDA++ ++AD+ E + + ++I P ++ ++A Sbjct: 126 CFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIA 185 Query: 385 VGTILLSMYLPMFA 398 V +ILLS+ +P Sbjct: 186 VVSILLSVVVPKVV 199
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.002 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 54 VDIAELMDGDDNLYGDDGSDDMD 76 D+ E DG+D LYGD G+D + Sbjct: 746 DDLIEGNDGNDRLYGDKGNDTLS 768 Score = 24.9 bits (54), Expect = 0.037 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 55 DIAELMDGDDNLYGDDGSD 73 DI DGDD + G+DG+D Sbjct: 738 DIFHGADGDDLIEGNDGND 756
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 37.6 bits (87), Expect = 6e-06 Identities = 16/44 (36%), Positives = 30/44 (68%) Query: 25 QGWTLIEIGVVTVIVGILAAMAFPSLAGIQARNQVRSRMIEVRA 68 +G+TL+EI VV VI+G+LA++ P+L G + + + + ++ A Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVA 51
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 41.8 bits (98), Expect = 2e-07 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 22 SGWTLIEIGVVTTIVGILASVAFPSLMGIKAKMDTRGEFSEVVQTLRQA 70 G+TL+EI VV I+G+LAS+ P+LMG K K D + S++V L A Sbjct: 8 RGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIV-ALENA 55
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 32.7 bits (74), Expect = 0.001 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 197 LSLQGTARHELGHALGIWGHSDHKEDALYPAQTADVPAISPRDLRTLYRLYQQPTRLGWS 256 L G HELGH LG H+D+ +D +Y T + +S ++ + LGW Sbjct: 348 LMYPGVMAHELGHILGA-EHTDNSKDLMYATFTGYLSHLSEKN------MDIIAKNLGWE 400 Query: 257 V 257 Sbjct: 401 A 401
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.004 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 12/62 (19%) Query: 625 IMAAASGEVVFSGWNSGGFGNLVKIRHGDGSVTYYAHNNRLLVRRGEYVEQGQQIAEMGS 684 I+A A+G++ SG +I+ + S+ ++V+ GE V +G + ++ + Sbjct: 82 IVATANGKLTHSG-------RSKEIKPIENSIV-----KEIIVKEGESVRKGDVLLKLTA 129 Query: 685 TG 686 G Sbjct: 130 LG 131
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 144 bits (364), Expect = 3e-40 Identities = 77/388 (19%), Positives = 137/388 (35%), Gaps = 89/388 (22%) Query: 5 VGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVGYAKNGDR------LVGQIAKRQA 58 + IDLGT N+ + V G PSVV ++ VG AK+ Sbjct: 13 LSIDLGTANTLIYVKGQGIVLNE---------PSVVAIRQDRAGSPKSVAAVGHDAKQML 63 Query: 59 VMNPGNTFYSVKRFIGRKFDEITNEATEVAYSVVKDGNGNVKLDCPAQGKQFAPEEISAQ 118 PGN A +KDG F E++ Sbjct: 64 GRTPGNI---------------------AAIRPMKDG---------VIADFFVTEKMLQH 93 Query: 119 VLRKLVDDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGIEVLRIINEPTAASLA 178 ++++ S + ++ VP +R+A +++ + AG + +I EP AA++ Sbjct: 94 FIKQV---HSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIG 150 Query: 179 YGLDKKDNETILVFDLGGGTFDVSILEVGEGVFEVLATSGDTHLGGDDFDKKIVDFLAGE 238 GL + +V D+GGGT +V+++ + V S +GGD FD+ I++++ Sbjct: 151 AGLPVSEATGSMVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRFDEAIINYVRRN 205 Query: 239 FQKAEGIDLRKDKQALQRLTEAAEKAKIELS----GVSQTEINLPFITATQDGPKHLDTT 294 + G AE+ K E+ G EI + + P+ Sbjct: 206 YGSLIGE-------------ATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLN 252 Query: 295 LSRAKFEEICSDL----------IDRCGIPVENAIRDAKIDKSALDEIVLVGGSTRIPAV 344 S E + L +++C + + I + +VL GG + + Sbjct: 253 -SNEILEALQEPLTGIVSAVMVALEQCPPELASDISERG--------MVLTGGGALLRNL 303 Query: 345 QEVVKKILGKDPNQGVNPDEVVAVGAAI 372 ++ + G +P VA G Sbjct: 304 DRLLMEETGIPVVVAEDPLTCVARGGGK 331
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 32.1 bits (73), Expect = 0.001 Identities = 17/132 (12%), Positives = 47/132 (35%), Gaps = 6/132 (4%) Query: 26 ELEALLEQLKEQEADARRLLTDLQRKKQDQEAQILNLAQDIQAWH--SRIQQAKAAGRED 83 E+ L +KEQ + + + + A+ L + I + SR+++++ Sbjct: 183 EVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS 242 Query: 84 LAQR---AQEREATLLRQGNQVWGQRVGTEQRISQAQSLLQEIQQRQKEVQQKAKQMAAE 140 L + A+ + + + + ++ Q +S + ++ + V Q K + Sbjct: 243 LLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD 302 Query: 141 QKASEAQRRAAD 152 + + Sbjct: 303 KLR-QTTDNIGL 313
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.022 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 114 GKPPEASAPMPRPA--PPSPGDRREKVTSATEALDQWLTTLKRRAE-VLQPC 162 G+PP+ P P PG + E LD + L+ R +L+P Sbjct: 400 GEPPKKRDPSAGAGTDPGGPGGGDDGEDPFGEWLDDEVARLRLRGRWLLKPR 451
>INTIMIN#Intimin signature. Length = 939 Score = 43.1 bits (101), Expect = 3e-05 Identities = 74/366 (20%), Positives = 124/366 (33%), Gaps = 46/366 (12%) Query: 973 TEEVVATVSDLAGNPATPATRNITV----DTVAPAVTIDSISDDTGAQAN--DFITNDDT 1026 +V A D GN + ITV V D +D T A+A+ + IT T Sbjct: 524 VYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 1027 LVFNGTAEADSTVVVSLDGIEIGTVTANGAGEWTLDYTGTLLADGDYELSVTATNPTGNS 1086 + NG A+A+ V + I GT + A + G +++ + P Sbjct: 584 VKKNGVAQANVPVSFN---IVSGTAVLS-ANSANTN------GSGKATVTLKSDKPGQVV 633 Query: 1087 ATATQTIVVDTTAPTVTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTY 1146 +A T T +NA AV + + + + TT +T T+ Sbjct: 634 VSA------KTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKG 687 Query: 1147 TATVTGNAWTFNIPVADIANFEATEEV--VATVSDLAGNPA----TPATRNITVDTTAPT 1200 V+ TF + ++N + A V+ + P + ++ VD AP Sbjct: 688 DKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPE 747 Query: 1201 VTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTYTATVTGNAWTFNIPV 1260 V D N G+ V T ++ GQV GN +T+ Sbjct: 748 VEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG--------KYTWRSAN 799 Query: 1261 ADIANFEATEEVV-------ATVSDLAGNPATPATRNITVDTVAPAVTIDSISDDTGAQA 1313 IA+ +A+ V T+S ++ + T T+ T + + T A Sbjct: 800 PAIASVDASSGQVTLKEKGTTTISVISSDNQTAT---YTIATPNSLIVPNMSKRVTYNDA 856 Query: 1314 NDFITN 1319 + N Sbjct: 857 VNTCKN 862 Score = 43.1 bits (101), Expect = 3e-05 Identities = 74/366 (20%), Positives = 124/366 (33%), Gaps = 46/366 (12%) Query: 1269 TEEVVATVSDLAGNPATPATRNITV----DTVAPAVTIDSISDDTGAQAN--DFITNDDT 1322 +V A D GN + ITV V D +D T A+A+ + IT T Sbjct: 524 VYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 1323 LVFNGTAEADSTVVVSLDGIEIGTVTANGAGEWTLDYTGTLLADGDYELSVTATNPTGNS 1382 + NG A+A+ V + I GT + A + G +++ + P Sbjct: 584 VKKNGVAQANVPVSFN---IVSGTAVLS-ANSANTN------GSGKATVTLKSDKPGQVV 633 Query: 1383 ATATQTIVVDTTAPTVTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTY 1442 +A T T +NA AV + + + + TT +T T+ Sbjct: 634 VSA------KTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKG 687 Query: 1443 TATVTGNAWTFNIPVADIANFEATEEV--VATVSDLAGNPA----TPATRNITVDTTAPT 1496 V+ TF + ++N + A V+ + P + ++ VD AP Sbjct: 688 DKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPE 747 Query: 1497 VTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTYTATVTGNAWTFNIPV 1556 V D N G+ V T ++ GQV GN +T+ Sbjct: 748 VEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG--------KYTWRSAN 799 Query: 1557 ADIANFEATEEVV-------ATVSDLAGNPATPATRNITVDTVAPAVTIDSISDDTGAQA 1609 IA+ +A+ V T+S ++ + T T+ T + + T A Sbjct: 800 PAIASVDASSGQVTLKEKGTTTISVISSDNQTAT---YTIATPNSLIVPNMSKRVTYNDA 856 Query: 1610 NDFITN 1615 + N Sbjct: 857 VNTCKN 862 Score = 43.1 bits (101), Expect = 3e-05 Identities = 74/366 (20%), Positives = 124/366 (33%), Gaps = 46/366 (12%) Query: 1565 TEEVVATVSDLAGNPATPATRNITV----DTVAPAVTIDSISDDTGAQAN--DFITNDDT 1618 +V A D GN + ITV V D +D T A+A+ + IT T Sbjct: 524 VYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 1619 LVFNGTAEADSTVVVSLDGIEIGTVTANGAGEWTLDYTGTLLADGDYELSVTATNPTGNS 1678 + NG A+A+ V + I GT + A + G +++ + P Sbjct: 584 VKKNGVAQANVPVSFN---IVSGTAVLS-ANSANTN------GSGKATVTLKSDKPGQVV 633 Query: 1679 ATATQTIVVDTTAPTVTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTY 1738 +A T T +NA AV + + + + TT +T T+ Sbjct: 634 VSA------KTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKG 687 Query: 1739 TATVTGNAWTFNIPVADIANFEATEEV--VATVSDLAGNPA----TPATRNITVDTTAPT 1792 V+ TF + ++N + A V+ + P + ++ VD AP Sbjct: 688 DKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPE 747 Query: 1793 VTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTYTATVTGNAWTFNIPV 1852 V D N G+ V T ++ GQV GN +T+ Sbjct: 748 VEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG--------KYTWRSAN 799 Query: 1853 ADIANFEATEEVV-------ATVSDLAGNPATPATRNITVDTVAPAVTIDSISDDTGAQA 1905 IA+ +A+ V T+S ++ + T T+ T + + T A Sbjct: 800 PAIASVDASSGQVTLKEKGTTTISVISSDNQTAT---YTIATPNSLIVPNMSKRVTYNDA 856 Query: 1906 NDFITN 1911 + N Sbjct: 857 VNTCKN 862 Score = 43.1 bits (101), Expect = 3e-05 Identities = 74/366 (20%), Positives = 124/366 (33%), Gaps = 46/366 (12%) Query: 1861 TEEVVATVSDLAGNPATPATRNITV----DTVAPAVTIDSISDDTGAQAN--DFITNDDT 1914 +V A D GN + ITV V D +D T A+A+ + IT T Sbjct: 524 VYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 1915 LVFNGTAEADSTVVVSLDGIEIGTVTANGAGEWTLDYTGTLLADGDYELSVTATNPTGNS 1974 + NG A+A+ V + I GT + A + G +++ + P Sbjct: 584 VKKNGVAQANVPVSFN---IVSGTAVLS-ANSANTN------GSGKATVTLKSDKPGQVV 633 Query: 1975 ATATQTIVVDTTAPTVTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTY 2034 +A T T +NA AV + + + + TT +T T+ Sbjct: 634 VSA------KTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKG 687 Query: 2035 TATVTGNAWTFNIPVADIANFEATEEV--VATVSDLAGNPA----TPATRNITVDTTAPT 2088 V+ TF + ++N + A V+ + P + ++ VD AP Sbjct: 688 DKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPE 747 Query: 2089 VTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTYTATVTGNAWTFNIPV 2148 V D N G+ V T ++ GQV GN +T+ Sbjct: 748 VEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG--------KYTWRSAN 799 Query: 2149 ADIANFEATEEVV-------ATVSDLAGNPATPATRNITVDTVAPAVTIDSISDDTGAQA 2201 IA+ +A+ V T+S ++ + T T+ T + + T A Sbjct: 800 PAIASVDASSGQVTLKEKGTTTISVISSDNQTAT---YTIATPNSLIVPNMSKRVTYNDA 856 Query: 2202 NDFITN 2207 + N Sbjct: 857 VNTCKN 862 Score = 43.1 bits (101), Expect = 3e-05 Identities = 74/366 (20%), Positives = 124/366 (33%), Gaps = 46/366 (12%) Query: 2157 TEEVVATVSDLAGNPATPATRNITV----DTVAPAVTIDSISDDTGAQAN--DFITNDDT 2210 +V A D GN + ITV V D +D T A+A+ + IT T Sbjct: 524 VYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 2211 LVFNGTAEADSTVVVSLDGIEIGTVTANGAGEWTLDYTGTLLADGDYELSVTATNPTGNS 2270 + NG A+A+ V + I GT + A + G +++ + P Sbjct: 584 VKKNGVAQANVPVSFN---IVSGTAVLS-ANSANTN------GSGKATVTLKSDKPGQVV 633 Query: 2271 ATATQTIVVDTTAPTVTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTY 2330 +A T T +NA AV + + + + TT +T T+ Sbjct: 634 VSA------KTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKG 687 Query: 2331 TATVTGNAWTFNIPVADIANFEATEEV--VATVSDLAGNPA----TPATRNITVDTTAPT 2384 V+ TF + ++N + A V+ + P + ++ VD AP Sbjct: 688 DKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPE 747 Query: 2385 VTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGNTYTATVTGNAWTFNIPV 2444 V D N G+ V T ++ GQV GN +T+ Sbjct: 748 VEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG--------KYTWRSAN 799 Query: 2445 ADIANFEATEEVV-------ATVSDLAGNPATPATRNITVDTVAPAVTIDSISDDTGAQA 2497 IA+ +A+ V T+S ++ + T T+ T + + T A Sbjct: 800 PAIASVDASSGQVTLKEKGTTTISVISSDNQTAT---YTIATPNSLIVPNMSKRVTYNDA 856 Query: 2498 NDFITN 2503 + N Sbjct: 857 VNTCKN 862 Score = 42.7 bits (100), Expect = 5e-05 Identities = 66/352 (18%), Positives = 108/352 (30%), Gaps = 39/352 (11%) Query: 2453 TEEVVATVSDLAGNPATPATRNITV----DTVAPAVTIDSISDDTGAQAN--DFITNDDT 2506 +V A D GN + ITV V D +D T A+A+ + IT T Sbjct: 524 VYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTAT 583 Query: 2507 LVFNGTAEADSTVVVSL--DGIEIGTVTANGAGEWTLDYTGTLLADGDYELSVTATNPTG 2564 + NG A+A+ V ++ + +AN G T G +S T Sbjct: 584 VKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTS 643 Query: 2565 NSATATQTIVVDTTAPTVTI----------NAIAVDDIINAVEAGSPVA---VSGTTTGV 2611 V T A I A+ + ++ PV+ V+ TTT Sbjct: 644 ALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLG 703 Query: 2612 EDGQVVTVTIDGNTYTATVTGNAWTFNIPVADIANFEATEEVVATVSDLAGNPATPATRN 2671 + T T+T ++ A +++ A + V T N Sbjct: 704 KLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSD-VAVDVKAPEVEFFT--TLTIDDGN 760 Query: 2672 IT-----VDTTAPTVTINAIAVDDIINAVEAGSPVAVSGTTTGVEDGQVVTVTIDGN-TY 2725 I V PTV + V+ + + D VT+ T Sbjct: 761 IEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTT 820 Query: 2726 TATVTGN-----AWTFNIP----VADIANFEATEEVVATVSDLAGNPATPAT 2768 T +V + +T P V +++ + V T + G + Sbjct: 821 TISVISSDNQTATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQN 872 Score = 37.7 bits (87), Expect = 0.001 Identities = 70/404 (17%), Positives = 127/404 (31%), Gaps = 58/404 (14%) Query: 2749 TEEVVATVSDLAGNPATPATRNITVDTVAPAVNELDITDNT--DTGADDLITSNGNPVLT 2806 +V A D GN + ITV + V+++ +TD T T A ++G +T Sbjct: 524 VYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAK----ADGTEAIT 579 Query: 2807 FTGEPGLTITLTGPDGALAPSAAYTVAETPSANGSTYTVILLDAIPNGEPDPFGDFANGV 2866 +T T+ G A P + V+ T + ++ +G Sbjct: 580 YTA----TVKKNGVAQANVPVSFNIVSGTAVLSANSAN----------------TNGSGK 619 Query: 2867 ATNNPDNTGDGTYTIVATDAAGNSVEVDEFVIDTTPPNIAITAITNDSGTPGDFITNDQT 2926 AT + G +V+ A + ++ I + I D+T Sbjct: 620 ATVTLKSDKPGQ-VVVSAKTAEMTSALN------ANAVIFVDQTKASITE----IKADKT 668 Query: 2927 LIYSGTTDANATVTVTLTDSSNNPVFTATTTADANGNWSLDRTANETLAGGTYTLT-AST 2985 + DA +T T+ + + L + +T G +T ST Sbjct: 669 TAVANGQDA---ITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTST 725 Query: 2986 TDLAGNTTTDTQAIRIETNAPGIAIASISTDSGIPGDFVTNDQTLVIAGTWTNLDTNTLA 3045 T + + ++ AP + + T + V + W L Sbjct: 726 TPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLK 785 Query: 3046 VTFNGTTYTF-GENPQL-TVSGNNWTLDLSGITTPPGDYVITAVTTDLANNTSQATQNVT 3103 + YT+ NP + +V ++ + L G I+ +++D Q T Sbjct: 786 ASGGNGKYTWRSANPAIASVDASSGQVTLKE----KGTTTISVISSD--------NQTAT 833 Query: 3104 IDTTAPNASITLTSN---ITADDVINAVEAGQLIPITGTVGGNV 3144 PN+ I + D V G +P + NV Sbjct: 834 YTIATPNSLIVPNMSKRVTYNDAVNTCKNFGGKLPSSQNELENV 877 Score = 37.4 bits (86), Expect = 0.002 Identities = 68/378 (17%), Positives = 119/378 (31%), Gaps = 46/378 (12%) Query: 675 SNTTPTTDEQYTLDNTAPAASITLDANITADDIINIAESGQAIPITGTVGGEFNVGDTVT 734 S + D Q L S A D + + + IT G+ VT Sbjct: 502 SGSQSAQDYQAILPAYVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVT 561 Query: 735 LTVNDK-----------TFTGAVGAGGLFSINVPGSDLIVDADLTIAASIATTDAAGNLG 783 DK T+T V G+ NVP S IV ++A+ A T+ +G Sbjct: 562 DFTADKTSAKADGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSG--- 618 Query: 784 SATDNQTYTVDTTAPIPIITVNDVTADNIINAAESGQAIPITGTVGGEFNVGDTVTLTVN 843 TV + P V + +A + I + T + T V Sbjct: 619 ------KATVTLKSDKPGQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVA 672 Query: 844 GKPFTGTVDANGDFSIDVLGGDLVNGSDLTIAASVA----TTDAAGNPGSASDNQT-YTV 898 T G V+ ++T ++ +T+ G A T T Sbjct: 673 NGQDAITYTVKVMK-----GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTP 727 Query: 899 DTTAPTVTINAIAVDDIINAVEAGSPVAVSGTTTGVE----DGQVVTVTIDGNTYTATVT 954 + + ++ +AVD VE + + + + G++ TV + + Sbjct: 728 GKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKAS 787 Query: 955 GN--AWTFNIPVADIANFEATEEVV-------ATVSDLAGNPATPATRNITVDTVAPAVT 1005 G +T+ IA+ +A+ V T+S ++ + T T+ T + Sbjct: 788 GGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQTAT---YTIATPNSLIV 844 Query: 1006 IDSISDDTGAQANDFITN 1023 + T A + N Sbjct: 845 PNMSKRVTYNDAVNTCKN 862 Score = 33.1 bits (75), Expect = 0.034 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 6/151 (3%) Query: 3260 SDGTTPQTIVLTAAQINAGVVTTQVAVPNPGTTLTVTAFVTDIAGNQGTSGRDSAVLDTT 3319 +DGT T T + Q VP ++ TA ++ + N SG+ + L + Sbjct: 572 ADGTEAITYTATVKKNG----VAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSD 627 Query: 3320 APGAPTVTITEDTNNDGFISAGELNGLVDVSIALPTGLVAGDTLTISDGTTPQTIVLTTA 3379 PG V+ + + VD + A T + A T +++G T + Sbjct: 628 KPGQVVVSAKTAEMTSALNANAVI--FVDQTKASITEIKADKTTAVANGQDAITYTVKVM 685 Query: 3380 QITAGVVTTQVAVPNPGTTLTVTAFVTDIAG 3410 + V +V L+ + TD G Sbjct: 686 KGDKPVSNQEVTFTTTLGKLSNSTEKTDTNG 716
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1037 bits (2682), Expect = 0.0 Identities = 394/1059 (37%), Positives = 606/1059 (57%), Gaps = 30/1059 (2%) Query: 5 ISNVFIKNPVLTTVCTIVIILLGAIALPLLPLAKLPDMAPKQVQVTTNYVGSDAQTAVDN 64 ++N FI+ P+ V I++++ GA+A+ LP+A+ P +AP V V+ NY G+DAQT D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VTTVLERQINGTEQVIYMNSTTDNTGTSTINVYFPVEMDRNIAQVLVQNNVAIAASSLPE 124 VT V+E+ +NG + ++YM+ST+D+ G+ TI + F D +IAQV VQN + +A LP+ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 125 VVNRQGVTTQTQSPSVTIAYGVYSENDDQGKPIYDDIFVSNFVDRVLLDEIKRIDGVGSA 184 V +QG++ + S S + G S+N +S++V + D + R++GVG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPG-----TTQDDISDYVASNVKDTLSRLNGVGDV 175 Query: 185 ILIGASEYAMRFWLDPDALAARDLTAADVTNAIRSQNIQVGVGGVNLPPVTDQQRFQINA 244 L G ++YAMR WLD D L LT DV N ++ QN Q+ G + P Q+ + Sbjct: 176 QLFG-AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASI 234 Query: 245 RALSRFTTPEEAEQIVVKVGDDGTLIRIKDVGRATIGTQNYIQTALFNNAPAVAFVIYQL 304 A +RF PEE ++ ++V DG+++R+KDV R +G +NY A N PA I Sbjct: 235 IAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLA 294 Query: 305 PGTNALDTANMVKEKMAELRPLFPPGLNAEVALDNTLFVTASLEEAALTLIEAILLVILV 364 G NALDTA +K K+AEL+P FP G+ D T FV S+ E TL EAI+LV LV Sbjct: 295 TGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLV 354 Query: 365 IFIFLQNWRTTLIPALAIPVSLIGAMAFALAFGFSLNQLTLFGVILATGLVVDDGILVVE 424 +++FLQN R TLIP +A+PV L+G A AFG+S+N LT+FG++LA GL+VDD I+VVE Sbjct: 355 MYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVE 414 Query: 425 AIE-VKLDQGMKPFQAALDAMGELTGAVISTSLVLMAVFIPVTFFPGTTGIVYKQFAVIM 483 +E V ++ + P +A +M ++ GA++ ++VL AVFIP+ FF G+TG +Y+QF++ + Sbjct: 415 NVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITI 474 Query: 484 ASAVAVSTFNAISFSPSMSAILMRP-KKEVHGPLAWFFNLFNRTFDWLKERYGNIITAIL 542 SA+A+S A+ +P++ A L++P E H FF FN TFD Y N + IL Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 543 KVRLLAIPIFIGSLILTVIVYNITPTGFIPEEDQGYFFMLGNSPAGVSIEYTKDVISQAT 602 + I+ + V+++ P+ F+PEEDQG F + PAG + E T+ V+ Q T Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVT 594 Query: 603 EIV--SARPEVEHVLGMGGFSFLGNDSSKSLFFVKLKNWDERPGQKGSVFGLLAEINREL 660 + + + VE V + GFSF G + + FV LK W+ER G + S ++ EL Sbjct: 595 DYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMEL 654 Query: 661 AQKIPDAQVFAVNAPPVDGLSSTGGLDFYIQNRGGMPLENFLDYVQQYMEKLRQEPALNP 720 + I D V N P + L + G DF + ++ G+ + Q + Q PA + Sbjct: 655 GK-IRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA-SL 712 Query: 721 RTVFTQFTFNAPLLEIGVDREKANAQNVDISEVFNTIGIYMGSSYINQFVMESRLYQVYA 780 +V + ++ VD+EKA A V +S++ TI +G +Y+N F+ R+ ++Y Sbjct: 713 VSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYV 772 Query: 781 MADGQFRSNPRDIGRLYVRSRTGALVQLSNLIDVKQTTYPPILTNFNIYPAVDVQASPAA 840 AD +FR P D+ +LYVRS G +V S P L +N P++++Q A Sbjct: 773 QADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP 832 Query: 841 GYSTGQAMATMERLSKEMFPDSIGYAWYGTGYEELQSAGAAPIIFGLAFIMVFLVLSAQY 900 G S+G AMA ME L+ ++ P IGY W G Y+E S AP + ++F++VFL L+A Y Sbjct: 833 GTSSGDAMALMENLASKL-PAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 901 ESYVDPAIIMMTVPLAILGAIGAILLRANFMVATNMVWPTVNNNVYAQVALVMLIGLASK 960 ES+ P +M+ VPL I+G + A L N+VY V L+ IGL++K Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLF------------NQKNDVYFMVGLLTTIGLSAK 939 Query: 961 NAILIVEFGNQAMDL-GMKIPQAAAFAAKERMRPILMTAISGLVGFWPLVIASGAGAMSR 1019 NAILIVEF M+ G + +A A + R+RPILMT+++ ++G PL I++GAG+ ++ Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 1020 WSLGTAIFGGYLISTILSLFLVPVLYTLVKEAEARFLKG 1058 ++G + GG + +T+L++F VPV + +++ R KG Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIR----RCFKG 1034 Score = 68.3 bits (167), Expect = 1e-13 Identities = 65/347 (18%), Positives = 133/347 (38%), Gaps = 39/347 (11%) Query: 734 LEIGVDREKANAQNVDISEVFNTI---------GIYMGSSYINQFVMESRLYQVYAMADG 784 + I +D + N + +V N + G G+ + + + + +A Sbjct: 184 MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASI-----IAQT 238 Query: 785 QFRSNPRDIGRLYVR-SRTGALVQLSNLIDVKQTTYP-PILTNFNIYPAVDVQASPAAGY 842 +F++ P + G++ +R + G++V+L ++ V+ ++ N PA + A G Sbjct: 239 RFKN-PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGA 297 Query: 843 ST----GQAMATMERLSKEMFPDSIGYAWYGTGYEELQSAGAAPIIFGL--AFIMVFLVL 896 + A + L + FP + Y ++ L A ++VFLV+ Sbjct: 298 NALDTAKAIKAKLAEL-QPFFPQGMKVL-YPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 897 SAQYESYVDPAIIMMTVPLAILGAIGAILLRANFMVATNMVWPTVNNNVYAQVALVMLIG 956 ++ I + VP+ +LG + A + N +V+ IG Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFA-------ILAAFGY-----SINTLTMFGMVLAIG 403 Query: 957 LASKNAILIVEFGNQAMDLGMKIPQAAAFAAKERMR-PILMTAISGLVGFWPLVIASGAG 1015 L +AI++VE + M P+ A + +++ ++ A+ F P+ G+ Sbjct: 404 LLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGST 463 Query: 1016 AMSRWSLGTAIFGGYLISTILSLFLVPVL-YTLVKEAEARFLKGEKG 1061 I +S +++L L P L TL+K A + + G Sbjct: 464 GAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGG 510
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 27.5 bits (61), Expect = 0.019 Identities = 17/53 (32%), Positives = 23/53 (43%) Query: 6 TTPTVKILREFAWIMAGMIAFLFGLLIPLLKGHGLPPLPWAIAFAFGGLGLVA 58 T P L E +M GMIA G ++ G P + A GG+G+ A Sbjct: 267 TGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPA 319
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 55.2 bits (133), Expect = 1e-09 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 3/126 (2%) Query: 7 PKVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTEFALMILAQEMSELDGL 66 +L+ DD L++AL ++ ++ A + L++ M + + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 NTAKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQPPNQNFLQVKAKLYLQ 126 + ++ P++ ++ Q A+ G D+L +P + L L Sbjct: 64 DLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASE-KGAYDYLPKPFDLTELIGIIGRALA 120 Query: 127 LFQQKQ 132 +++ Sbjct: 121 EPKRRP 126
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 32.1 bits (73), Expect = 0.010 Identities = 27/170 (15%), Positives = 63/170 (37%), Gaps = 30/170 (17%) Query: 782 PSPTVVAGLADLLMAEEDVFVRWLIVSSLAKIGQGDPSAIATLTTLVEKAVAQPRTEEGD 841 P+ ++ A L E+ ++ ++ L +G P +A L+ LVE+A+ E+G+ Sbjct: 114 PNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRP-ELAHLSHLVEQALVSMAEEQGE 172 Query: 842 WL-----LNETIQALLKVDPQNVGILSSLVYLLENTETSEHLQT----WAEILGRIDPGN 892 + + + + L + Q W+++ R G+ Sbjct: 173 TIVLGARITPEAYRESQSGVNPLQPLRDTYR-----DAVMGYQGIYAIWSDLQKRFPNGD 227 Query: 893 PIAINTLLRLLRNKEDPYGQRQAAASLAT----IDPGNLSALMALINLLQ 938 I++++ L Q+ +A L + L +++ + L+ Sbjct: 228 ---IDSVILFL--------QKALSADLQSQQSGSGREKLGIVISDLQKLK 266
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 26.6 bits (59), Expect = 0.043 Identities = 8/17 (47%), Positives = 9/17 (52%) Query: 120 GQLIPLDLEEAVAEVLA 136 IP + EA AEVL Sbjct: 323 DHYIPAEQIEATAEVLR 339
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.004 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 11/167 (6%) Query: 173 GAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLT-VGAAFLISEVSTAEEEEKPQPK 231 A G++ G L+ FS F A L + FL+ E E + Sbjct: 137 SACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREA 196 Query: 232 AQIKLVWQAVRQKTILLPTLFIFF--WQATPSAESAFFYFTTNELGFEPKFLGRVRLVTS 289 ++ R T++ + +FF + + F + ++ +G + + Sbjct: 197 LNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIG---ISLA 253 Query: 290 VAGLIG----VGLYQRFLKTLPFRVIMGWSTVISSLLGLTTLILITH 332 G++ + L R + +I+ G L T Sbjct: 254 AFGILHSLAQAMITGPVAARLGERRALMLG-MIADGTGYILLAFATR 299
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.008 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 17/87 (19%) Query: 58 CKALKEEGYEVVLVNS-----------NPASIMTDPELADRTYIEPLIPEIVEKIIEKER 106 +AL GY+V + ++ + ++TD + D + + I+K R Sbjct: 20 NQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD------LLPRIKKAR 73 Query: 107 PDAVLPTMGGQTALNLAVSLSKSGVLE 133 PD + M Q A+ S+ G + Sbjct: 74 PDLPVLVMSAQNTFMTAIKASEKGAYD 100
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.1 bits (83), Expect = 2e-04 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 3/101 (2%) Query: 350 ETTNPAVPTVPTPSQVT-PAPTISPAPGIAPSPAPLQPQPTPPPAVRSSPMPDAP--APR 406 +P P VT AP P P +P P P P +AP + Sbjct: 37 VHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 96 Query: 407 RQPTTTPSDPPMNVAPSPTRSAPAPAPTATPTPTSSQPSLP 447 +P P P+ P R ++ P+ P Sbjct: 97 PKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARP 137 Score = 33.8 bits (77), Expect = 0.001 Identities = 22/99 (22%), Positives = 32/99 (32%) Query: 346 PPGGETTNPAVPTVPTPSQVTPAPTISPAPGIAPSPAPLQPQPTPPPAVRSSPMPDAPAP 405 P PA P Q P P + P P P P P + P + P P Sbjct: 49 PISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 108 Query: 406 RRQPTTTPSDPPMNVAPSPTRSAPAPAPTATPTPTSSQP 444 ++ P+ P+ APA + T T++ Sbjct: 109 KKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATS 147 Score = 29.9 bits (67), Expect = 0.018 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 2/123 (1%) Query: 380 SPAPLQPQPTPPPAVRSSPMPDAPAPRRQPTTTPSDPPMNVAPSPTRSAPAPAPTATPTP 439 PAP QP A P A P +P P +P P P + AP P P Sbjct: 43 LPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEP-EPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 440 TSSQ-PSLPKTKGEMLLQQNQAPSIVPPQPNGNNGETEAEETQSQAPGLNNNNGLPGPIQ 498 P + + ++ ++ P + T + T + + + + P + Sbjct: 102 KPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALS 161 Query: 499 SKK 501 + Sbjct: 162 RNQ 164
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 36.8 bits (85), Expect = 3e-05 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 3/92 (3%) Query: 41 LTDEQLEVGDSLTDKAFAATEAGDFVTAEKYWTELIEKFPQNPAVWSNRGNSRVSQNKLD 100 ++ + LE L AF ++G + A K + L + + G R + + D Sbjct: 31 ISSDTLE---QLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87 Query: 101 EAIADFNQAIELAPEQTDPYLNRGTALEAKGE 132 AI ++ + ++ + L KGE Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGE 119
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 7e-13 Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 16 QLLTAANQVIVSQGVDALTLDAVASEAGVSKGGLLHYFPTKEALIAGMVQQALDRFVETL 75 +L A ++ QGV + +L +A AGV++G + +F K L + + + + E Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 76 HQELANDPA 84 + A P Sbjct: 75 LEYQAKFPG 83
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 31.5 bits (71), Expect = 0.001 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 9/52 (17%) Query: 28 GALVTFAGWVRNHNDGKQVDSLEYQVYRE---------LAINEGFKIIAEAK 70 G ++GWV + ++ + D + YR +A+N G+ + AK Sbjct: 215 GGTFKYSGWVESSDNDEHYDPGKRITYRSKVKDQNYYSVAVNAGYYVTPNAK 266
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.1 bits (73), Expect = 0.006 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 44/231 (19%) Query: 136 IVVPSGNALEASVVQGLKVYGFDHIKEVVDFLGAPEKFTPVNAQDAKQQWNTSLPCLDLK 195 ++V S + ++ + +D++ + D A+ ++ D Sbjct: 78 VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGM 137 Query: 196 DVKGQS----HGRRALEIAAAGGHNLIFVGPPGSGKTMLARRLPGILPPLQFEEALEVSQ 251 + G+S R L L+ G G+GK ++AR L Sbjct: 138 PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL----------------- 180 Query: 252 VHSVAGLLKERGQLIRQRPFRSPHHSASGPSLVG-------GGSFP-----RPGEISLAH 299 H +R R PF + + +A L+ G+F G A Sbjct: 181 -HD----YGKR----RNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAE 231 Query: 300 RGVLFLDELTEFKRNVLEFLRQPLEDGHVTISRTKQTIMFPAQFTLIASTN 350 G LFLDE+ + + L + L+ G T + I + ++A+TN Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPI--RSDVRIVAATN 280
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.010 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 53 VVILKGPSGSGKTTLLTLMGGLR 75 V+L+G G GK+TL+ + GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 29.3 bits (65), Expect = 0.024 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 17/96 (17%) Query: 216 DPTP-SRRPPTRRPRPEAGNDPAPSRRPRPSNNPPNDSFGDRPERNAPRNARPYEDEPPA 274 D TP S P +P PE P+ P P+ NP G RP N P D P Sbjct: 314 DLTPGSAEAPNAQPLPEVSPAENPANNPAPNENP-----GTRP------NPEPDPDLNPD 362 Query: 275 AY--VDYQPIDEADLTPRPTTPEDPADRNQEQSRSG 308 A D QP D P P+ P R++++ + G Sbjct: 363 ANPDTDGQPGTRPD---SPAVPDRPNGRHRKERKEG 395
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 44.7 bits (105), Expect = 2e-07 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 9 VIITGASSGVGLYGAKALIDKGWHVIMACRNLDKTQKVADEL---GFPKDSYTIIKLDLG 65 ITGA+ G+G A+ L +G H+ N +K +KV L +++ D+ Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF---PADVR 67 Query: 66 YLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATNHLGHF 120 ++ A+ P+ LV A V P L L S +++E + + N G F Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSL-SDEEWEATFSVNSTGVF 121
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.0 bits (62), Expect = 0.033 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 119 FGRLVPGIRTIVSLPAGVNAMGLISFTLYSLGGISLWVTFLASAGYKLGDHYELVEQYLG 178 + G+ T+ + + ++A SF L + A K EL + LG Sbjct: 235 LDNIGAGLDTVSGILSAISA----SFILSNAD---------ADTRTKAAAGVELTTKVLG 281 Query: 179 PVSKIVLVSIVA 190 V K + I+A Sbjct: 282 NVGKGISQYIIA 293
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.3 bits (73), Expect = 0.002 Identities = 17/96 (17%), Positives = 29/96 (30%) Query: 59 LPLPPPAAELEPLPPPSKDSASEAIATVPLADLVTPAPMAEPPPKKSPQVLAPLPGSQSV 118 P + PP +P P + +P PK P+ + Sbjct: 51 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Query: 119 REVVPDVIAPPPSPPQTTPLPKASPKAVKAPQGEPN 154 + V V + P SP + T + + A +P Sbjct: 111 KRDVKPVESRPASPFENTAPARLTSSTATAATSKPV 146 Score = 30.7 bits (69), Expect = 0.005 Identities = 16/84 (19%), Positives = 29/84 (34%) Query: 110 APLPGSQSVREVVPDVIAPPPSPPQTTPLPKASPKAVKAPQGEPNQRQDNEKIEPESVPE 169 A L Q+V+ V+ P P P PK +P ++ P+ +P + K E Sbjct: 53 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 112 Query: 170 SRSDQGQEVENEIKSIEPSSFPQP 193 + ++ P+ Sbjct: 113 DVKPVESRPASPFENTAPARLTSS 136
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.2 bits (104), Expect = 6e-08 Identities = 13/51 (25%), Positives = 25/51 (49%) Query: 143 VEPAHRRRGIATSLMEQAQQWGQQRGDRLIALQVFSHNQGAMKLYEKFGFT 193 V +R++G+ T+L+ +A +W ++ + L+ N A Y K F Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 4e-04 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 18/97 (18%) Query: 89 LVGFARATSDHAFNATVWDVVIHPSLQSKGLGKALMQYIIRKLRHYDISNITLFADPQVV 148 +G + S+ A + D+ + + KG+G AL+ I + + L + Q + Sbjct: 76 CIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLML--ETQDI 133 Query: 149 D-----FYRRLGFVL-----------DPEGIKGMFWY 169 + FY + F++ +FWY Sbjct: 134 NISACHFYAKHHFIIGAVDTMLYSNFPTANEIAIFWY 170
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.5 bits (87), Expect = 7e-05 Identities = 23/184 (12%), Positives = 70/184 (38%), Gaps = 27/184 (14%) Query: 72 SQTISDKNLQIIREAIATDPIDQYSLEKSFRESERGHLGQVS-------------QVCLT 118 + ++ + + ++ ++Q + R E L ++ +V Sbjct: 128 TALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 119 YAQYHDKIQTTDNQNFIIKINQT---------VAQINELEESNNTIRSQYDSTLLEKIAG 169 + ++ T NQ + ++N +A+IN E + +S+ D + Sbjct: 188 TSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD--FSSLLH 245 Query: 170 QGKENSINQTPPEKAKQQLNQNIAKIASLEQEIASLEQQILAKPESINFLKFINQKDIWE 229 + +I + + + + + + ++ + ++ +E +IL+ E + + + +I + Sbjct: 246 KQ---AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD 302 Query: 230 ELNQ 233 +L Q Sbjct: 303 KLRQ 306
>PF06580#Sensor histidine kinase Length = 349 Score = 45.6 bits (108), Expect = 5e-07 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 30/176 (17%) Query: 601 LDLIKELARTGLTEARRSVVAL----RPQLLEGGSLQSALHHLVAQIRTAAMDTTLYCEV 656 L+ I+ L T+AR + +L R L + Q +L + + Y ++ Sbjct: 179 LNNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVD-------SYLQL 231 Query: 657 K----GTAYALSTEVESNLLRIGQESLT------NAIKHA-----NADEIRVQLVYDCDR 701 ++ ++ + + N IKH +I ++ D Sbjct: 232 ASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGT 291 Query: 702 FCLRVKDNGQGFGVGSIPASEGFGLLGMSERAERI---GAQLTIRSQPGQGTEIIV 754 L V++ G + + S G GL + ER + + AQ+ + + G+ +++ Sbjct: 292 VTLEVENTGSL-ALKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.2 bits (164), Expect = 2e-15 Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 7/199 (3%) Query: 5 TTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPE 64 T +L+ADD A R L ++R V N D+ + D+ MP+ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRA-GYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 65 VEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124 + I ++V++ ++ + + GA YL K + EL+ I Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 125 RGQKYIPPDVGAKLVQRLSNPELSERELEVLGSLAQGMSNADIATALSIGE-GTVKSHVN 183 K P + + S E+ + + D T + GE GT K V Sbjct: 120 AEPKRRPSKLEDDSQDGMPLVGRSAAMQEIY-RVLARLMQTD-LTLMITGESGTGKELVA 177 Query: 184 RILNKLDVGDRTQAVIVAV 202 R L+ D G R VA+ Sbjct: 178 RALH--DYGKRRNGPFVAI 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.7 bits (248), Expect = 2e-27 Identities = 76/236 (32%), Positives = 111/236 (47%), Gaps = 15/236 (6%) Query: 4 IENKVIVITGASSGIGEATAKLLAQNGAKVVLGGRRIDKLEKLIKQIHASGGTAEFKTVD 63 IE K+ ITGA+ GIGEA A+ LA GA + +KLEK++ + A AE D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 64 VTDRHDVKAFVEFANDKFGRVDVIFNNAGVMPLSPMNALKVEEWDNMINVNIRGVLNGIA 123 V D + + G +D++ N AGV+ +++L EEW+ +VN GV N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 AGLPIMEAQGGGQIINTASIGAHVVVPTAAVYCATKYAV--WAISEGLRQESQNIRVTTI 181 + M + G I+ S A V + A Y ++K A + GL NIR + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 182 SPGVVATEL------GSDITDESSKGLLEE------LRKTALTSEAIARAVLYAVS 225 SPG T++ + ++ KG LE L+K A S+ IA AVL+ VS Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSD-IADAVLFLVS 240
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 41.7 bits (98), Expect = 2e-06 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 24/121 (19%) Query: 4 KILVTGATGSNGTEIVKRLAAKNVQVRA---------MVRDFDRAKKIAFPNVEVVEGNF 54 K LVTGA G G + KRL QV + R + +A P + + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 55 DRPETLLEALA--EVDRAFLL----------TNSTERAEAQQLAFV---DAARQNGVKHI 99 E + + A +R F+ N A++ F+ + R N ++H+ Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 100 V 100 + Sbjct: 122 L 122
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.1 bits (99), Expect = 3e-06 Identities = 67/344 (19%), Positives = 128/344 (37%), Gaps = 19/344 (5%) Query: 57 LTLRVTVFVLLSPIAGAIADRYDRKQMMVITHLARLGIVCLFPGVTQAWQIY-GLVLGLN 115 L L + +P+ GA++DR+ R+ +++++ + W +Y G ++ Sbjct: 49 LALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVA-G 107 Query: 116 VFNAFFTPTYTATIPLVTKEDEYPQAIALSSATYQLLGVLGPGLAGSLAAWVGTKTIFWG 175 + A A I +T DE + SA + V GP L G + + F Sbjct: 108 ITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAA 166 Query: 176 DALTFLMAAGLIFTLPGKLLANSTAQPVRNLAQIRRDIGTGTQCLFGDRLIRYALAMQLV 235 AL L F LP S R L + + + G ++ +A+ + Sbjct: 167 AALNGLNFLTGCFLLP-----ESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFI 221 Query: 236 VSLAGAGILVNTVGYVQGILNLGKLEYGWLMAAFGLGATVASLGLGNTQQQR---KRIYL 292 + L G V + + + G +AAFG+ ++A + R +R + Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM 281 Query: 293 TTIGAVVMSLAILPV---SMVNLQGLLLLWAGAGIGQTLVNVPTQTLIADRVAKELQGRV 349 + A +L + ++LL A GIG + Q +++ +V +E QG++ Sbjct: 282 LGMIADGTGYILLAFATRGWMAFPIMVLL-ASGGIGMPAL----QAMLSRQVDEERQGQL 336 Query: 350 YGANFAWSHLWWAFSYPLAGWLGSHFAQNSFFYLGILALSLFAL 393 G+ A + L L + + + I +L+ L Sbjct: 337 QGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLL 380
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 31.9 bits (72), Expect = 0.006 Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 10/101 (9%) Query: 234 ITAIQATLETTLNAEPNAEETHSTLQTLKRQNYRLSHLIHDLLLLSRMDLTTVNPTQFTL 293 IT T TTLN + E S LQTL N + L L+ LSR ++ L Sbjct: 937 ITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMI--LNSRLVNLSRRHTNHIDSFAKRL 994 Query: 294 CCLNDLVEDLTEEFASLAIAAGVL--LSAKLDNQANIWVRG 332 L D + FASL AA VL + K + N+W Sbjct: 995 QALKD------QRFASLESAAEVLYQFAPKYEKPTNVWANA 1029
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.7 bits (220), Expect = 2e-22 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 2 RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61 +L+ +D+ + L +AL R Y V + W ++ G + L + D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGD--LVVTDVVMPDENA 62 Query: 62 LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARL-RSLQRR 120 +L +++ R LP+L+++A++ ++ + GA DYL KPF + EL+ + R+L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 SPELQPQQ 128 + Sbjct: 123 KRRPSKLE 130
>PF07269#Transport secretion system IV, VirB7 protein Length = 55 Score = 25.4 bits (55), Expect = 0.017 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%) Query: 12 RTTDMRAVCNGIYYQLKTGCQWAMLPHDFPPSST 45 +T D A C G + L G +W P D P Sbjct: 16 QTNDKPASCKGPIFPLNVG-RWQPAPSDLHPGMA 48
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 28.7 bits (64), Expect = 0.008 Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%) Query: 84 KSFEILPKIWIV-ERTFG 100 K+F++ P IW+ ER +G Sbjct: 31 KAFKVAPNIWVAPERYYG 48
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 8e-07 Identities = 14/80 (17%), Positives = 29/80 (36%) Query: 345 GFIITQQIKEAEARAAQAEKEKQEAEQKRIEAEQKIAENEKRQRELEQKRVEEERQRLAA 404 I + E E + +A E + + + + E +I ++ + + Q E +L Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ 306 Query: 405 EAERAKQERQRLAAERQRVQ 424 + LA +R Q Sbjct: 307 TTDNIGLLTLELAKNEERQQ 326
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 28.1 bits (62), Expect = 0.010 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 3/42 (7%) Query: 64 GNGGGSCS---VSTAEKDDWYFVGGYCGGMPYTAASKHNWNV 102 G S S V EK W F+G Y Y S WN+ Sbjct: 283 AVLGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSWQEWNI 324
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 27.3 bits (60), Expect = 0.019 Identities = 4/20 (20%), Positives = 12/20 (60%) Query: 5 LTVSEVARKLGLNPQTLYFY 24 ++ E+A+ G+ +Y++ Sbjct: 32 TSLGEIAKAAGVTRGAIYWH 51
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 25.4 bits (55), Expect = 0.044 Identities = 12/37 (32%), Positives = 16/37 (43%) Query: 26 KIYKIGKASIYRWLNRVDLSPIKVERRHRKLDWEALK 62 K Y I K S RW V+ ++R + L W K Sbjct: 443 KAYTIEKDSSIRWNQLVEKPISPLQRSNLSLSWLDFK 479
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.4 bits (66), Expect = 0.031 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Query: 276 MIETYRDLASNLTDIYLSSVSNRMNEIMKTLT----VISSIFIPLTFIAGIYGMNFNP 329 ++E + + M++I L V+S++FIP+ F G G + Sbjct: 412 VVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 4e-17 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%) Query: 1276 TILVVDDSAALRRTLAFTLERSGYRVMQAKDGQEALKTLAQAGEVDLIICDVEMPNLNGF 1335 TILV DD AA+R L L R+GY V + + +A AG+ DL++ DV MP+ N F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-AGDGDLVVTDVVMPDENAF 63 Query: 1336 EFLGQ-RRRNPDLLKIPVAMLTSRGSEKHRQLAKTLGANAYFTKPYIEQQFLGAVQELLA 1394 + L + ++ PD +PV +++++ + A GA Y KP+ + +G + LA Sbjct: 64 DLLPRIKKARPD---LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 1395 T 1395 Sbjct: 121 E 121
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 27.6 bits (61), Expect = 0.023 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Query: 23 SQGQAESLQTMRSVRATMATT----GEQLEKLDSSTQEIAKAINLIRQFAAQTHLLALKA 78 S G S + + + + L S E+A +N Q AA+THL + Sbjct: 103 SAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLN--LQSAAETHLAQYED 160 Query: 79 SIEAARAGEEGRG 91 I + + RG Sbjct: 161 FIRSMKPRFVKRG 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 4e-22 Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 2 GSALVIDDSSTERSIISDFCQKLGINVTTAISGEEALEKLSQAVPDVIILDIVLPGRSGF 61 + LV DD + R++++ + G +V + ++ D+++ D+V+P + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 EICRELKDKDRTKSIPIILCSTKATDMDKFWGKRQGADAYITKPIDQEEFNTVIKQ 117 ++ +K +P+++ S + T M +GA Y+ KP D E +I + Sbjct: 64 DLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 2e-16 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 2/129 (1%) Query: 274 SGPLIACVDDSPLICQTMEKILTTANYRFVGINDPLRAIAILLARKPDLIFLDLVMPNAN 333 +G I DD I + + L+ A Y ++ + A DL+ D+VMP+ N Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 334 GYEICGQLRKLSIFKSTPIVILTGNDGIVDRVRAKMVGSTDFLSKPVNPDMVLQTIKKHL 393 +++ +++K P+++++ + + ++A G+ D+L KP + ++ I + L Sbjct: 62 AFDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 394 HDQASLPAE 402 + P++ Sbjct: 120 AEPKRRPSK 128
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 31.8 bits (72), Expect = 0.007 Identities = 18/139 (12%), Positives = 52/139 (37%), Gaps = 11/139 (7%) Query: 189 AGEAIAEVKGSDFEVTLEDGRFVAGIVDGIVGMAVDETKLIPVTFPEDYPLEAVAGEDVL 248 + E +K + +++L + + + + + + K + ++ +++ Sbjct: 209 SSEICFRLKNNSIDLSLSNLKEIVEVCKDLF-KEIQSNKFEFNCYTKNNSFVGFYCLNLM 267 Query: 249 FEIKLKEIKFRELPELDDDFAEDVSEFETMAELKADLEKQFQEQAKQRTDDNIK------ 302 + K+I++ +L ++F + + + +DL+K + T + Sbjct: 268 SKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSKSSDLQKIVMNNINRCTKKDKILNNTLK 327 Query: 303 ----AAIKKKLGELFTGDL 317 I K GEL T ++ Sbjct: 328 KCEDKDIFKLYGELLTANI 346
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 33.7 bits (77), Expect = 1e-04 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 46 HEMQDE-----TAHASLLIERILFLEETP--------DLSQQDPIRVGKTVPEMLQYDLD 92 HE +E + ER+L + P + + + EM+Q ++ Sbjct: 47 HEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVN 106 Query: 93 YEYEVIANLKEAMAVCEQEQDYQSRDLLLKILADTEEDHAYWLEKQLG 140 ++ + K + + E+ QD + DL + ++ + E+ + L LG Sbjct: 107 DYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK-QVWMLSSYLG 153
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 30.2 bits (68), Expect = 0.027 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 47/255 (18%) Query: 64 PDMVFTANAGLVLGENVVLSRFYHKERQGEEPYFKAWFEENGFTVYELP------QDLPF 117 P+++FT + +G V +++ + K RQ E + + F+ + +P ++ Sbjct: 157 PNVLFTRDPFASIGNGVTINKMFTKVRQRETIFAEYIFKYHPVYKENVPIWLNRWEEASL 216 Query: 118 EGAGDALFDREGRWLWAGYGFRSELDSHPYIAKWL------DTEVVSLRLIDER-FYHLD 170 EG GD L +G L G R+E S +A L +++ ++ R + HLD Sbjct: 217 EG-GDELVLNKGL-LVIGISERTEAKSVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLD 274 Query: 171 TCFCPLSGGYLLYYPPA---FDAYS----NRVIEMRIPPEKR--------IIVEELDAVN 215 T F + + F Y ++ I EK + ++D + Sbjct: 275 TVFTQIDYSVFTSFTSDDMYFSIYVLTYNPSSSKIHIKKEKARIKDVLSFYLGRKIDIIK 334 Query: 216 FACNAVNVNDIIIMNLVSRTL----------------KEKLAEAGFKVRETPLTEFLKAG 259 A + N + L + E G KV P +E + Sbjct: 335 CAGGDLIHGAREQWNDGANVLAIAPGEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGR 394 Query: 260 GAAKCLTLR-VTEPI 273 G +C+++ + E I Sbjct: 395 GGPRCMSMPLIREDI 409
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 65.2 bits (159), Expect = 2e-14 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 6 ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65 I V + + +R++L+ L ++GY V+ S + L V D + D + +L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 66 CRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIE-CLIRRVRT 123 + + + + ++SA++T + + GA DYL KPF + E + I L R Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125 Query: 124 VAAPLLLDYGVLKI 137 + + + Sbjct: 126 PSKLEDDSQDGMPL 139
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 98.0 bits (244), Expect = 4e-24 Identities = 68/356 (19%), Positives = 137/356 (38%), Gaps = 47/356 (13%) Query: 60 APEDKPVAALGRIAPLGEIIKLSASPGSFGGAKVARVLVKEGDKVKEGQVVAVLDSYEQK 119 + A G++ G ++ S V ++VKEG+ V++G V+ L + Sbjct: 78 GQVEIVATANGKLTHSGRSKEIKPIENSI----VKEIIVKEGESVRKGDVLLKLTA-LGA 132 Query: 120 AAAVVSAQESVRVAQAD---------------LAIIEAGAKRGEIAAQESQVRKAQAELE 164 A + Q S+ A+ + L ++ + E +V + + ++ Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIK 192 Query: 165 QNFAVNQAALANL---VKQLEGEKLEQQATIDRLQAEVNQAANDDRRYRSLAENGAIAMA 221 + F+ Q + + E+L A I+R + + + SL AIA Sbjct: 193 EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKH 252 Query: 222 DWEQRRLNLETSNQRLREAQARLMKTEATLEEQIREQQSVRDKDAQTMVLERESARATLS 281 ++ + LR +++L + E+ + +E+ + + + +L+ Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILS-AKEEYQLVTQLFKNEILD--------- 302 Query: 282 QIAEIRPVDVQKAKAELNLAMARFQEARAELDTALVRAPVDSQV--LKIYTRPGEKVSDT 339 ++R L LA ++ + +RAPV +V LK++T G V+ Sbjct: 303 ---KLRQTTDNIGLLTLELAKNEERQQASV-----IRAPVSVKVQQLKVHT-EGGVVTTA 353 Query: 340 NGILDLGITSQMIVV-AEVYENDIGRVELGQTAWVRSE--NDSFSGELEGRVTNIG 392 ++ + + V A V DIG + +GQ A ++ E + G L G+V NI Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.006 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 21/114 (18%) Query: 171 ALVDERLVRSILSNLLSNAIKY----SPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQ 226 A++D ++ ++ L+ N IK+ P GG+I + + D+ + EV + G + Sbjct: 249 AIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK 308 Query: 227 KQIFEPFHRGKNVRNITGTGLGLM-VAKKCVDLHSGSILLKSAVDQGTTVTICL 279 + TG GL V ++ L+ +K + QG + L Sbjct: 309 E----------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.036 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 14 EKPLYELEEKINQIRELAEEKNVDVSEQLSQLESRAEQLRQEIFSNLNPSQRLQLA 69 E + +E+ + +L + ++ ++L Q L E+ N +R Q + Sbjct: 279 ESEILSAKEEYQLVTQLFKN---EILDKLRQTTDNIGLLTLELAKN---EERQQAS 328
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 90.4 bits (224), Expect = 1e-20 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 14/179 (7%) Query: 1049 EQLQVINLPEDFDIFEYQKNNPINLNSLIVASGNGD---SLGDDNLVINANPKLITM--- 1102 + + N D D + ++ + S+ A G S +N IN N + Sbjct: 268 DSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGG 327 Query: 1103 ERGNNTFVVG-SYTKVLGGAGNDLLQASPDNSFGGVHLNGGEGNDIIIGGEGDDTLLGGL 1161 +GN + G + +GG+GND+L + L GG GND++ GG G DTL GG Sbjct: 328 LKGNVSIAHGVTIENAIGGSGNDILVGNS----ADNILQGGAGNDVLYGGAGADTLYGGA 383 Query: 1162 GDDIIWWSLGDDFIDGGG--GTDTLAGIQLLNL-AESETINIKGIEIFQLADAGEVVLD 1217 G D + G D D GI ++L A + ++ EV+L Sbjct: 384 GRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQ 442 Score = 33.4 bits (76), Expect = 0.008 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 4/107 (3%) Query: 1081 GNGDSLGDDNLVINANPKLITMERGNNTFVVGSYTKVL-GGAGNDLLQASPDNSFGGVHL 1139 G GD +D + + + M Y G D + A + Sbjct: 205 GEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGANMTT 264 Query: 1140 NGGEGNDIIIGGEGDDTLLGGLGDDIIWWSLGDDFIDGGGGTDTLAG 1186 G+ D + + + GG T +G Sbjct: 265 RTGDSVYGFNSNTDRDFYTATDSSKAL---IFSVWDAGGTDTFDFSG 308
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 129 bits (326), Expect = 1e-33 Identities = 56/274 (20%), Positives = 84/274 (30%), Gaps = 54/274 (19%) Query: 99 WIPGGTPDGADKLY--GEEGDDMILAE---GGDDQIWGGPGNDRLFGEHGNDQIWGEDGD 153 W T + Y DD+ + G + G D D Sbjct: 229 WGENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSS 288 Query: 154 DYIDVGPGLDSAWGGNGNDTITSNWMAGRKYLSGEDGNDTI-FGAENSDIIEGGPGDDVL 212 + + S W G DT SG N I + + G G+ + Sbjct: 289 KAL-----IFSVWDAGGTDTFD---------FSGYSNNQRINLNEGSFSDVGGLKGNVSI 334 Query: 213 WGLRAYPSSVGDAIDRIYGGPGNDLIYGDSFYFPNDGLWSSVLQYTQDIIWGGLGNDTIQ 272 G I+ GG GND++ G+S +I+ GG GND + Sbjct: 335 AH--------GVTIENAIGGSGNDILVGNSA---------------DNILQGGAGNDVLY 371 Query: 273 GMAGNDTIYGGEGNDIIYGGYDPSGSFIPPAEFHGDNFIDVGTGHNFAYGGPGNDVIKVS 332 G AG DT+YGG G D G S + + +F G D+ Sbjct: 372 GGAGADTLYGGAGRDTFVYG-SGQDSTVAAYD----------WIADFQKGIDKIDLSAFR 420 Query: 333 GEISEQGFNILIGGDGDDLIQGGDNSVPIEDLVV 366 E G G +++ D + I +L + Sbjct: 421 NEGQLSFVQDQFTGKGQEVMLQWDAANSITNLWL 454 Score = 92.0 bits (228), Expect = 3e-21 Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 12/193 (6%) Query: 49 LSGANDTISGANGNDVIYGHHGDDFLSGEGDSDTIYGGFGNDAIRGGYHDWIPGGTPDGA 108 L GAN T + + DF + S + G D Sbjct: 257 LYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIF----SVWDAGGTDTFDFSGYSNN 312 Query: 109 DKLYGEEG-DDMILAEGGDDQIWGGPGNDRLFGEHGNDQIWGEDGDDYIDVGPGLDSAWG 167 ++ EG + G+ I G + G GND + G D+ + G G D +G Sbjct: 313 QRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYG 372 Query: 168 GNGNDTITSNWMAGRKYLSGEDGNDTIFGAENS--DIIEGGPGDDVLWGLRAYPSSVGDA 225 G G DT+ AGR G D+ A + D +G D+ Sbjct: 373 GAGADTLYGG--AGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDL---SAFRNEGQLSF 427 Query: 226 IDRIYGGPGNDLI 238 + + G G +++ Sbjct: 428 VQDQFTGKGQEVM 440 Score = 87.3 bits (216), Expect = 8e-20 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 9/173 (5%) Query: 30 DVVWAKSGDDLVHGRNFSSLSGANDTISGANGNDVIYGHHGDDFLSGEGDSDTIYGGFGN 89 + A D+ + G SG ++ I G+ Sbjct: 262 MTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGS 321 Query: 90 DAIRGGYHDWIPGGTPDGADKLYGEEGDDMILAEGGDDQIWGGPGNDRLFGEHGNDQIWG 149 + G G + + + G+D + G ++ L G GND ++G Sbjct: 322 F-------SDVGGL--KGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYG 372 Query: 150 EDGDDYIDVGPGLDSAWGGNGNDTITSNWMAGRKYLSGEDGNDTIFGAENSDI 202 G D + G G D+ G+G D+ + + + G D D + Sbjct: 373 GAGADTLYGGAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQL 425 Score = 42.6 bits (100), Expect = 8e-06 Identities = 26/196 (13%), Positives = 44/196 (22%), Gaps = 54/196 (27%) Query: 230 YGGPGNDLIYGDSFYFPNDGL----WSSVLQYTQDIIWGGLGNDTIQGMAGNDTIYGGEG 285 Y G + Y + L G D + Sbjct: 228 YWGENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDS 287 Query: 286 NDIIYGGYDPSGSFIPPAEFHGDNFIDVGTGHNFAY-GGPGNDVIKVSGEISEQGFNILI 344 + + + D G F + G N I ++ F+ + Sbjct: 288 SKALIF-----------------SVWDAGGTDTFDFSGYSNNQRINLNEG----SFSDVG 326 Query: 345 GGDGDDLIQGGDNSVPIEDLVVLPGLEEQVKELKEFIKTLENAEGVVPTIGDFIDGGKGF 404 G G+ I G I+ G D + G Sbjct: 327 GLKGNVSIAHGVT-----------------------IENAIGGSG-----NDILVGNSAD 358 Query: 405 NTIEAGDGTDIILAGL 420 N ++ G G D++ G Sbjct: 359 NILQGGAGNDVLYGGA 374 Score = 41.1 bits (96), Expect = 3e-05 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 33/131 (25%) Query: 897 DVMGTDGDDRIIVNS-NQEVFAGAGNDVIYASISAGGNTLSGGSGKDQFWFYDDPNGTLG 955 + +G G+D ++ NS + + GAGNDV+Y AG +TL GG+G+D F Y + Sbjct: 342 NAIGGSGNDILVGNSADNILQGGAGNDVLYGG--AGADTLYGGAGRDTFV-YGSGQDST- 397 Query: 956 INIVENVIDEGGLSFDAIEEYGQRFSTSAINVITDFNPEEDVIGVVDFPFPLGLNSF--T 1013 +A + I DF D I + F L+ Sbjct: 398 --------------------------VAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQ 431 Query: 1014 SRQEGNDFIIS 1024 +G + ++ Sbjct: 432 FTGKGQEVMLQ 442 Score = 33.8 bits (77), Expect = 0.005 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 40/145 (27%) Query: 670 GDDEII-VDFGQRVFAGAGDDEIYAGISLGGNTLSGGIGKDQFWFYDDQAAEVIDSFKET 728 G+D ++ + GAG+D +Y G G +TL GG G+D F + Sbjct: 348 GNDILVGNSADNILQGGAGNDVLYGG--AGADTLYGGAGRDTFVYGS------------- 392 Query: 729 IKIVNVGIADANEQERFIRQIYGDMFGEGSINVIVDFDIDEDSIGFADFLVPVGVN--DV 786 G + + I DF D I + F ++ Sbjct: 393 ----------------------GQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQD 430 Query: 787 QLRQEGNDAIISLFARDVALLQGVN 811 Q +G + ++ A + ++ Sbjct: 431 QFTGKGQEVMLQWDAANSITNLWLH 455
>RTXTOXINC#Gram-negative bacterial RTX toxin-activating protein C signature. Length = 170 Score = 69.2 bits (169), Expect = 1e-17 Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 4/133 (3%) Query: 13 NALKILGEIVFLMGASQNFAKYPVSFIINYLLPSIYLNQYRIYRTVKDNKPIGFACWAFI 72 L+ILG + +L +S +PVS +LP+I NQY + +D+ P+ + WA + Sbjct: 5 KPLEILGHVSWLWASSPLHRNWPVSLFAINVLPAIQANQYVLL--TRDDYPVAYCSWANL 62 Query: 73 NDQVEKELIENDINLSVEERNSGENIYVLYFIAPFGHAKQIVHDLKNNIFPNKIVKGLRL 132 + + E + + + +L E+ SG+ + + +IAPFG + ++ FP+++ + +R+ Sbjct: 63 SLENEIKYLNDVTSLVAEDWTSGDRKWFIDWIAPFGDNGALYKYMRKK-FPDELFRAIRV 121 Query: 133 DKDGKKVLRVATY 145 D V +V+ + Sbjct: 122 DP-KTHVGKVSEF 133
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.1 bits (75), Expect = 0.005 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%) Query: 523 PGGK---VVGLIGKSGCGKSTLAKILTGLYSVQAGEINIGNH 561 PG K V L G G GKSTL L GL +IG Sbjct: 591 PGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG 632
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.9 bits (75), Expect = 0.001 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 6/102 (5%) Query: 59 SEALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVE--EA 116 + + +VV + D + DLL ++K P +L+++ + +A Sbjct: 37 ATLWRWIAAGD-GDLVVTDVVMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKA 93 Query: 117 QQYGADAIFLESSLGNGEINLAVECLLQGRTYIDSRLEAIAD 158 + GA +L E+ + L S+LE + Sbjct: 94 SEKGAYD-YLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQ 134
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 38.2 bits (88), Expect = 2e-05 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 10/84 (11%) Query: 163 APTDNEFQRRLSLIETILANKFPDLTKEIIMQMLDLKQMDITKSLFYQEIIQEGLEEGRQ 222 AP EF + ETI+ P L ++ L Q+ + +++ Q G+ EGRQ Sbjct: 16 APPQAEFVPIVEPEETIIEEAEPSLEQQ-------LAQLQMQA---HEQGYQAGIAEGRQ 65 Query: 223 RGLEEGRQEGIQEGLEEGRQEGEA 246 +G ++G QEG+ +GLE+G E ++ Sbjct: 66 QGHKQGYQEGLAQGLEQGLAEAKS 89
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 283 bits (726), Expect = 2e-83 Identities = 116/472 (24%), Positives = 196/472 (41%), Gaps = 58/472 (12%) Query: 219 NPPTLTRHNGQDVLAVQVVKTAQANTLEVVDRVEQLIVEQAPKFPQ-LKFIEAETTAGYI 277 N + R NG+ + + AN L+ ++ + E P FPQ +K + T ++ Sbjct: 274 NYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFV 333 Query: 278 REATQATIEALLGAIVLAVLIIYPFLRSGWATLISAIAIPLSLLGTFIVMAALDFNLETL 337 + + ++ L AI+L L++Y FL++ ATLI IA+P+ LLGTF ++AA +++ TL Sbjct: 334 QLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTL 393 Query: 338 TLLALALIIGIVVDDAIVDVENIARH-VEAGEPPKRAAKIGTEEIGLTVSATTFSIVVVF 396 T+ + L IG++VDDAIV VEN+ R +E PPK A + +I + + VF Sbjct: 394 TMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVF 453 Query: 397 LPIALLGGTLGEFFFPFAVTVSAAVIVSLLVARTLSPVLTVLWLRTQTPRPQ-------S 449 +P+A GG+ G + F++T+ +A+ +S+LVA L+P L L+ + Sbjct: 454 IPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFG 513 Query: 450 WFSRGLDALGNGYQRVLAWSLGHRWWIVALALVSLMAGLAIIPLIPQGFVPTLDRGEFNV 509 WF+ D N Y + LG + + + + + + +P F+P D+G F Sbjct: 514 WFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLT 573 Query: 510 IFQSAPPKIAGALSTPPRGNNNDTSAGGAFGWIDQLATNPEAVLLRRGRRVAEELEPPIL 569 + Q P R ++V +++ L Sbjct: 574 MIQL-----------------------------------PAGATQERTQKVLDQVTDYYL 598 Query: 570 ADPA--VTETFTVVGIQGNPL---QGKIYVKLD-----SDREVTTQTVQTEVREALPEIP 619 + V FTV G + G +V L + E + + V + L +I Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 620 RVTTRVENIL-FVQTGDDTPLKLALL---GNDLDLLQTTGKALEEKVMALPG 667 N+ V+ G T L+ G D L L P Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Score = 197 bits (502), Expect = 4e-54 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 2/222 (0%) Query: 677 EPDSTGILRLRGQRAVYLSASLLPNYALGDLTQQVTAIAEGLLPPGVELSVQGESARVGS 736 S + R G ++ + P + GD + +A L P G+ G S + Sbjct: 809 VYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKL-PAGIGYDWTGMSYQERL 867 Query: 737 VFREFALAFLLSLLGMAAIFLGLFRRLLEPMVVLLSLPLSIVGAMVGLLVTQSEFGMISL 796 + +S + + L+ P+ V+L +PL IVG ++ + + + + Sbjct: 868 SGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFM 927 Query: 797 IGLIFLLGLLDKNAILLIDYANQL-RHRGLSRQEALLQTGHIRLRPILMTTSSTILGMLP 855 +GL+ +GL KNAIL++++A L G EA L +RLRPILMT+ + ILG+LP Sbjct: 928 VGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLP 987 Query: 856 LALGWGAGAELRQPMAIAIIGGLFTSSVLSLVVVPVLYSLLD 897 LA+ GAG+ + + I ++GG+ ++++L++ VPV + ++ Sbjct: 988 LAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029 Score = 80.7 bits (199), Expect = 1e-17 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Query: 30 LSHWAIDHPRFTIGFWLAIAVAGLLTFSSLKYALFPEVSFPVVIVQSSGAGLDLAQTEQK 89 ++++ I P F + + +AG L L A +P ++ P V V ++ G D + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 90 LTIPLEEKLVTIADADVQSST--YPGQTVASVIFLMGQSLEQATTAVEQSLQGVT--LPA 145 +T +E+ + I + SST G ++ F G + A V+ LQ T LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 146 GSEIT-VAPYNLNESVAVTYAVASET--LSLEEMAAPLQQELMPQLQNIAGVLRVDLLG 201 + ++ + S + S+ + ++++ + + L + GV V L G Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Score = 79.9 bits (197), Expect = 3e-17 Identities = 45/244 (18%), Positives = 98/244 (40%), Gaps = 14/244 (5%) Query: 674 TGAEPDSTGILRLRGQRAVYLSASLLPNYALGDLTQQVTAIAEGL---LPPGVELSVQGE 730 G E + I R+ G+ A L L D + + A L P G+++ + Sbjct: 270 LGGE-NYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYD 328 Query: 731 SAR-----VGSVFREFALAFLLSLLGMAAIFLGLFRRLLEPMVVLLSLPLSIVGAMVGLL 785 + + V + A +L L M +FL R L + +++P+ ++G L Sbjct: 329 TTPFVQLSIHEVVKTLFEAIMLVFLVMY-LFLQNMRATL---IPTIAVPVVLLGTFAILA 384 Query: 786 VTQSEFGMISLIGLIFLLGLLDKNAILLID-YANQLRHRGLSRQEALLQTGHIRLRPILM 844 +++ G++ +GLL +AI++++ + L +EA ++ ++ Sbjct: 385 AFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVG 444 Query: 845 TTSSTILGMLPLALGWGAGAELRQPMAIAIIGGLFTSSVLSLVVVPVLYSLLDDVWGQKP 904 +P+A G+ + + +I I+ + S +++L++ P L + L + Sbjct: 445 IAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504 Query: 905 RPEK 908 K Sbjct: 505 HENK 508 Score = 67.6 bits (165), Expect = 2e-13 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 5/228 (2%) Query: 212 ALAQQTINPPTLTRHNGQDVLAVQVVKTAQANTLEVVDRVEQLIVEQAPKFPQLKFIEAE 271 + P L R+NG + +Q ++ + + +E L A K P + Sbjct: 804 TTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENL----ASKLPAGIGYDWT 859 Query: 272 TTAGYIREATQATIEALLGAIVLAVLIIYPFLRSGWATLISAIAIPLSLLGTFIVMAALD 331 + R + + + V+ L + S + + +PL ++G + + Sbjct: 860 GMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFN 919 Query: 332 FNLETLTLLALALIIGIVVDDAIVDVENI-ARHVEAGEPPKRAAKIGTEEIGLTVSATTF 390 + ++ L IG+ +AI+ VE + G+ A + + T+ Sbjct: 920 QKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSL 979 Query: 391 SIVVVFLPIALLGGTLGEFFFPFAVTVSAAVIVSLLVARTLSPVLTVL 438 + ++ LP+A+ G + V ++ + L+A PV V+ Sbjct: 980 AFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVV 1027
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 48.7 bits (116), Expect = 2e-08 Identities = 49/248 (19%), Positives = 85/248 (34%), Gaps = 52/248 (20%) Query: 43 AGMVAQAMVSRDKRYPGVAPEARLYSTAMGPLSENLQP--QQCLAGQFVSRQDGSNIRAV 100 AG +A + GVAPEA L + L++ + G + + + +I + Sbjct: 91 AGTIA--ATENENGVVGVAPEADLLIIKV--LNKQGSGQYDWIIQGIYYAIEQKVDI--I 144 Query: 101 NLSYGESLERDARGDAQLDGNALLTLCLDWLTQQQNLLFVVAGNQGTGGIAIPTDNY-NG 159 ++S G + +A + Q L+ AGN+G G Y Sbjct: 145 SMSLGGPEDVPELHEA-----------VKKAVASQILVMCAAGNEGDGDDRTDELGYPGC 193 Query: 160 ITVAYTVQSADRQGRYDRMAFTNLSRQPEGMGKRIVEREINQGRRQGVSLVAPGSDFYLY 219 +V + + F+N V LVAPG D Sbjct: 194 YNEVISVGAINFDRH--ASEFSN--------------------SNNEVDLVAPGEDILST 231 Query: 220 DMKGRVEWVSGSSFASPLVTGTVALLQEFGDRQLLVNTNSSRWNLDARRPMVMKAVLLNS 279 G+ SG+S A+P V G +AL+++ + S +L + A L+ Sbjct: 232 VPGGKYATFSGTSMATPHVAGALALIKQ-------LANASFERDLT---EPELYAQLIKR 281 Query: 280 AVKIRNAG 287 + + N+ Sbjct: 282 TIPLGNSP 289
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 118 bits (296), Expect = 2e-35 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 15/196 (7%) Query: 14 AEQTRRTRRAILDRARHLFATKGYAATGTEEIISELAITRGALYHQFGDKRGLFKAVIVE 73 ++ + TR+ ILD A LF+ +G ++T EI +TRGA+Y F DK LF + Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 74 AYEEITDYI-QTKVQPLDNNWQQLIVGCRAFLEVAQQDELRRLVFV----------EAPA 122 + I + + + + + L LE +E RRL+ E Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 123 VLAADDLTEIDQYGFGLLHGSIQTAVSEGELDA-VDAEGFAHLVNGSLNEL-AAWVAQSN 180 V A ++ Y + +++ + L A + A ++ G ++ L W+ Sbjct: 126 VQQAQRNLCLESY--DRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 181 DPERLTTAQCLVETLL 196 + A+ V LL Sbjct: 184 SFDLKKEARDYVAILL 199
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.9 bits (80), Expect = 1e-04 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 141 IENVAVLPEARGQGFGKALLRALLAKGRSQGHEFAGIM--VINGNDRARHTYESVGFK 196 IE++AV + R +G G ALL + + F G+M + N A H Y F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENH--FCGLMLETQDINISACHFYAKHHFI 147
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.8 bits (67), Expect = 0.043 Identities = 25/110 (22%), Positives = 33/110 (30%), Gaps = 2/110 (1%) Query: 429 AIAINLCCTALLTLPMVLLLPWLAPAPAGFPIPLGGIVVALTMGLLWNFTFATLVQWSLL 488 A+ L L L L L P A GG + T +L Sbjct: 475 VSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 489 RMRFPRLLVLILSVVVMVVLPLAIAIG--AGIKESTVMWFSPLPSIALVE 536 LL+ L V MVVL L + + + LP+ A E Sbjct: 535 GSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584
>PF01206#SirA family protein Length = 76 Score = 30.9 bits (70), Expect = 8e-04 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%) Query: 92 ANYDFNVDLLDLSAPM-LMKAAERVQQLNRGLVRTIQGDFRSVSLPNSTYDVLIAAAVL- 149 A +D ++D L+ P+ ++KA + + +N G V + P S D + Sbjct: 2 AEFDQSLDATGLNCPLPILKAKKTLATMNAGEVLYVMATD-----PGSVKDFESFSKQTG 56 Query: 150 HHLRDDED 157 H L + ++ Sbjct: 57 HELLEQKE 64
>ICENUCLEATIN#Ice nucleation protein signature. Length = 1258 Score = 30.9 bits (69), Expect = 0.019 Identities = 17/55 (30%), Positives = 22/55 (40%) Query: 98 GCSINASYHVTGEGFGESSSQPVEILPQTSPYNEAVSAQIASSYNTREGVDLLAG 152 + Y T SS QT+ YN ++A S+ REG DL AG Sbjct: 525 ESDLITGYGSTSTAGANSSLIAGYGSTQTASYNSVLTAGYGSTQTAREGSDLTAG 579
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 181 bits (460), Expect = 2e-51 Identities = 108/475 (22%), Positives = 198/475 (41%), Gaps = 75/475 (15%) Query: 5 IRNVAIIAHVDHGKTTLVDALLKQSGIFRE-GE-DVPVCVMDSNDLERERGITILSKNTA 62 I N+ ++AHVD GKTTL ++LL SG E G D D+ LER+RGITI + T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 63 VRYQDTLINIVDTPGHADFGGEVERVLGMVDGCVLIVDANEGPMPQTRFVLKKALEKGLR 122 ++++T +NI+DTPGH DF EV R L ++DG +L++ A +G QTR + + G+ Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 123 PLVVVNKIDRPRADPNTAVDKVFDLF---------VELGADDDQCDFTTL-----FASGL 168 + +NKID+ D +T + + VEL + +FT G Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGN 182 Query: 169 GGFAKESLDDDSEDMK------------------------------PLFEAILHHVPPPA 198 ++ + S + L E I + Sbjct: 183 DDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST 242 Query: 199 GDPNKPLQLQVTTLDYSDYLGRIIIGRIHNGTVKAGQQAALVKEDGSIAKGKVSKLLGFE 258 L +V ++YS+ R+ R+++G + + +++ K K++++ Sbjct: 243 HRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKE----KIKITEMYTSI 298 Query: 259 GLNRIELPEASAGYIVAIAGFADANIGETL---TCPDEPQALPLIKVDEPTLQMTFSVND 315 ++ +A +G IV + + L + + I+ P LQ T + Sbjct: 299 NGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRER---IENPLPLLQTTVEPSK 354 Query: 316 SPFAGQEGKFVTSRQIRDRLNRELETNVALRVEDGESAEQFLVSGRGELHLGILIETMRR 375 Q + D L +++ LR + + ++S G++ + + ++ Sbjct: 355 P---QQREM------LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQE 405 Query: 376 E-GYEFQVAQPQVIYREVNGQPCEPVEYLV-LDVPE----AAVGACIERLGQRRG 424 + E ++ +P VIY E +P + EY + ++VP A++G + L G Sbjct: 406 KYHVEIEIKEPTVIYME---RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSG 457 Score = 40.6 bits (95), Expect = 2e-05 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 1/81 (1%) Query: 398 EPVEYLVLDVPEAAVGACIERLGQRRGEMQDMQTSVNGRTQLEFVIPARGLLGFRGDFIR 457 EP + P+ + + + D N L IPAR + +R D Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVD-TQLKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 458 ITRGEGIMNHSFLEYRPMSGD 478 T G + Y +G+ Sbjct: 596 FTNGRSVCLTELKGYHVTTGE 616
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 33.5 bits (76), Expect = 0.002 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 6/141 (4%) Query: 19 PATVTLSTGNGLSAYVRIGQQIQESAATVDLVVVDNKDSQGSQQNLQRLLDGEVDFAMVQ 78 P ++TL G + + + E V L + D+QG + + Sbjct: 358 PLSITLQAGAHAQGKALLYRVLPEP---VKLTLTGGADAQGDIVATELPSIPGTSIGPLD 414 Query: 79 LDVASEAMKAGDVAAVAILTEEYAHIVGRKNQNVNTLRDLEGKKVSIGPPASGINF---T 135 + +AS+A G AV L+ + A V N NV LR V PA F T Sbjct: 415 VALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLT 474 Query: 136 ATRLFDSTNLTIQPYTQLGLS 156 L S + + LGLS Sbjct: 475 VNTLAGSGLFRMNVFADLGLS 495
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 26.3 bits (58), Expect = 0.024 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 7 FAGGFLLGTVIGGVVGGI 24 F G + G V+GG++GG Sbjct: 140 FGFGMVAGPVLGGLMGGF 157
>PF07675#Cleaved Adhesin Length = 1358 Score = 33.5 bits (76), Expect = 8e-04 Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 10/105 (9%) Query: 162 QTPSGMNPNSFNNPNLGLPGMTPGNAFPNGANPGMSNFNNSNPGGSGAGVPNFSNTPLPG 221 P+G PN NPN T +F NG + G N++ TP PG Sbjct: 612 SAPNG-TPNPNPNPNPNPGTTTLSESFENGIPASWKTIDADGDGN------NWTTTPPPG 664 Query: 222 MPDANGNVSPNPGMNPGFPGG-GAMSPDPNSQSPNL--PGMGNTV 263 G+ S + + G +PD +P L P G Sbjct: 665 GSSFAGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPNGGTLT 709
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 33.1 bits (75), Expect = 0.002 Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 380 YSTCTLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNS 420 Y + PAE+ ++ F DH+ WR EP+ +PQG NS Sbjct: 168 YRNLNIAPAEDGYRLAGFPPDHQAWREEPWIHHAPQGCGNS 208
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 1e-21 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 12 PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71 IL+ +DD I ++ + L R + +T++ T R DL+V D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 72 EVCTRIRQQPGSKDPYI--LMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARV-RAL 128 ++ RI+ P + L+++A+ + I GA DYL KPF EL+ + RAL Sbjct: 64 DLLPRIK----KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 129 LRRQLRQGQPVGQIYR 144 + R + Sbjct: 120 AEPKRRPSKLEDDSQD 135
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 34.6 bits (79), Expect = 0.002 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%) Query: 361 GISQKYILAKRIANNLSLNHLHASAIARLVARCQALVLSPLHYLG--DKIVYHKVRQAAG 418 GISQ YI+A+R A LS ++A A L+A L +SPL +L DK + Sbjct: 286 GISQ-YIIAQRAAQGLST----SAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYS 340 Query: 419 GRLETLISGGGALARHLDDFYEITSI 444 R + L G +L L F++ T Sbjct: 341 QRFKKLGYDGDSL---LAAFHKETGA 363
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 5e-11 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 267 KVVCLDDDYAIGKQIELFLTNQNPNCEVVVLQDPLQAMTTLLTLQPDLILCDITMPHLDG 326 ++ DDD AI + L+ +V + + + DL++ D+ MP + Sbjct: 5 TILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 327 YEICRMVRHAQHLRAIPIIMLTGKEAYLDRLLARMAGATDYLTKPFTQKELISLVE 382 +++ ++ A+ +P+++++ + ++ + A GA DYL KPF ELI ++ Sbjct: 63 FDLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-22 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 30 VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89 +L+ +D ++ R +++ L G+ V I + + DLVV D+VMP N +++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 90 CRRIKS-DPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145 RIK P ++PV++ S++ +GA Y+ KPF EL+G I + L Sbjct: 66 LPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 41.5 bits (97), Expect = 3e-06 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Query: 9 QLYGLAYAAYGQGNYQEASSHIEQLAADFPEDPNVLLLRGHIYVGLEQYALAHQAYQGVI 68 QLY LA+ Y G Y++A + L D L G + QY LA +Y Sbjct: 38 QLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY-SYG 96 Query: 69 RFSDRQDLIDCANQALGQIQEEEPRGNGAKDSLDQDWQ 106 D ++ + A +Q+ E A+ L + Sbjct: 97 AIMDIKEPRFPFHAAECLLQKGEL--AEAESGLFLAQE 132
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 28.4 bits (63), Expect = 0.039 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 19/105 (18%) Query: 157 GLSLFVGMAGGLVISSSLYAINPTIFLNSVQNFTQ--LWDVFACLFKSLVF--------- 205 GLS A GL+ S+ AI+P FL+ F + + ++ FK L + Sbjct: 299 GLST-SAAAAGLIASAVTLAISPLSFLSIADKFKRANKIEEYSQRFKKLGYDGDSLLAAF 357 Query: 206 ----GVI-IAIIGCSWGLTTTGGAKGVGESTTTAVVTSLLAIFIS 245 G I ++ S L + G+ + TT++V + ++ + Sbjct: 358 HKETGAIDASLTTISTVLASVSS--GISAAATTSLVGAPVSALVG 400
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 46.6 bits (110), Expect = 2e-09 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 5/86 (5%) Query: 44 IFGIGLPELGLIFVIALLVFGPKKLPEVGRSLGKALRGFQEASKEFETELKRE--AQNLE 101 +F IG EL L+F+I L+V GP++LP +++ +R + + + EL +E Q + Sbjct: 1 MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQ 60 Query: 102 KSVQIKAELE--ESKTPESSSSSEKA 125 S++ K E + TPE +S ++ Sbjct: 61 DSLK-KVEKASLTNLTPELKASMDEL 85
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 50.6 bits (121), Expect = 2e-08 Identities = 32/204 (15%), Positives = 76/204 (37%), Gaps = 5/204 (2%) Query: 160 LLKLDQYEMLATRAKDISKEAKGKINILDERLQILEQDLNQRPDVVANQAKLVAEITEVQ 219 LLKL A K S + ++ ++ +LN+ P++ ++E + Sbjct: 124 LLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEE 183 Query: 220 AQQQQTQWQLQQLQTSQNQRQQWQKQAGWQQRQCQELTTEIARLENQNEEINQQCQKLKL 279 + + + +Q T QNQ+ Q + ++ + + I R EN + + Sbjct: 184 VLRLTSLIK-EQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS 242 Query: 280 LLEQEAVIQVNFQRYQTLQSQET-ELAKAFQQYQNLQQQRQDLEQQLQRQENELARQTEQ 338 LL ++A+ + + + EL Q + ++ + +++ Q + Sbjct: 243 LLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILD 302 Query: 339 QLLRLEHLDKQLAELQPILAQQQD 362 +L + + L LA+ ++ Sbjct: 303 KLRQTT---DNIGLLTLELAKNEE 323 Score = 39.4 bits (92), Expect = 7e-05 Identities = 33/242 (13%), Positives = 77/242 (31%), Gaps = 39/242 (16%) Query: 338 QQLLRLEHLDKQLAELQPILAQQQDIEADLDKLKIAKQKLSQLDNLQHQVAPLLQRRSAL 397 LL+L L + A+ + + + +I + + + ++ ++ Sbjct: 122 DVLLKLTALGAE-ADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVS 180 Query: 398 QGDLARARAQCQAQLEQRQAIAKQLQIAIAAIPEQRRAFQALDEEIFQLKNKQVYLKRVE 457 + ++ R + + Q Q Q ++ + +R A R+ Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA----------------RIN 224 Query: 458 EKGQERGHFKERLQENQRLFEKQLRELEQKLTLLGIPGATCPLCEQGLDGHYHQQVIEKT 517 K RL + L KQ L + + Sbjct: 225 RYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQ--------------------ENKYVEA 264 Query: 518 EHQCQELRNQIWILKEQITLADQELAILRNEYKEIADGLTNLEQLLQHYGQMEAELEKSG 577 ++ + ++Q+ ++ +I A +E ++ +K + L L Q + G + EL K+ Sbjct: 265 VNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN--EILDKLRQTTDNIGLLTLELAKNE 322 Query: 578 EN 579 E Sbjct: 323 ER 324 Score = 36.0 bits (83), Expect = 7e-04 Identities = 24/217 (11%), Positives = 71/217 (32%), Gaps = 19/217 (8%) Query: 581 EQLVELNEQIADLELSLTEGNFAESLQLELAALERELTNLAYDEQTHA-LARSTVDQLRK 639 + L++L A+ + T+ + ++ +LE + ++ ++ L Q Sbjct: 122 DVLLKLTALGAEADTLKTQSSLLQA-RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVS 180 Query: 640 GEIRQAKLKEAQSKYRQLTGDRPGLEQKLLALRSQLQSLGTSSPLRQQWQQVSTAISELN 699 E + ++ + E L R++ ++ + + + S L+ Sbjct: 181 EEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTV--LARINRYENLSRVEKSRLD 238 Query: 700 YNNETHQQLLGELRRQQPWQLKHQELEQARQQLPILIQRGQEYQDLIGDRQRALEERQGE 759 L +Q + + + + + + Y+ + + + + E Sbjct: 239 --------DFSSLLHKQ--AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEE 288 Query: 760 LAQLEEQIR-----QYADHGEQIKLLEQELAQRRQQL 791 + + + + + I LL ELA+ ++ Sbjct: 289 YQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 77.4 bits (190), Expect = 6e-19 Identities = 65/260 (25%), Positives = 107/260 (41%), Gaps = 20/260 (7%) Query: 24 LSGKHAFVTGIANNRSIAWGIAQQLHQAGAEI-GVSYLPDEKGRFEKKVRELTEPLHPTL 82 + GK AF+TG A + I +A+ L GA I V Y P++ + E H Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSS--LKAEARHAE- 60 Query: 83 VLPGDVQDDAQVDALFHSVKEKWGKLDILIHCLAFADKSGLTGNYTDIPKEAFSQAMEIS 142 P DV+D A +D + ++ + G +DIL++ A + GL + E + ++ Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNV-AGVLRPGLI---HSLSDEEWEATFSVN 116 Query: 143 TYSLGRLARGAKPLMTN--GGSIITLTYFGGVKVIPNYNLMGVAKAGLEMTVRYLAAELG 200 + + +R M + GSI+T+ + +KA M + L EL Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 201 PQNIRVNGISAGPIRT-----LASSAVGG---ILDMIHHVEEVAPLKRTVTQTEVGNTAA 252 NIR N +S G T L + G I + + PLK+ +++ + Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVL 236 Query: 253 FLASDLSSGITGQIIYVDSG 272 FL S + IT + VD G Sbjct: 237 FLVSGQAGHITMHNLCVDGG 256
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.011 Identities = 9/22 (40%), Positives = 15/22 (68%) Query: 33 ALVVIGPSGTGKSTILRIIAGL 54 ++V+ G G GKST++ + GL Sbjct: 598 SVVLEGTGGIGKSTLINTLVGL 619
>PF05860#haemagglutination activity domain. Length = 117 Score = 111 bits (278), Expect = 1e-30 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 38 AQNITPAPDGTGTTVDAQGNQFNIGGGSLSGDGQNLFHSLQQFGLDQGQIANFLSNPDIR 97 AQ + + +GN I G+ +G NLFHS Q+F + A F + +I+ Sbjct: 1 AQITPDTTLPINSNITTEGNTRIIERGTQAGS--NLFHSFQEFSVPTSGTAFFNNPTNIQ 58 Query: 98 NILTRIVGGDASIINGLIQVSGGNANLFLMNPAGMIFGPNASINVPGDFVVTTGSAIGFG 157 NI++R+ GG S I+GLI+ ANLFL+NP G+IFG NA +++ G FV +T + + F Sbjct: 59 NIISRVTGGSVSNIDGLIRA-NATANLFLINPNGIIFGQNARLDIGGSFVGSTANRLKFA 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 4e-15 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251 IL+A+D+ + V +Q L+ GY V I +N + + DLV+ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305 I++ P P +V M+A + + G Y+ KP + +L ++ Sbjct: 66 LPRIKKARP--DLPVLV-MSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Score = 60.6 bits (147), Expect = 3e-11 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 1031 MKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLDAAILDLQMPN 1090 M G +L+ DD+ R +L G ++ + W A D + D+ MP+ Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD-GDLVVTDVVMPD 59 Query: 1091 MDGITLAHHLRQFAQGKDLPIILLS 1115 + L ++ DLP++++S Sbjct: 60 ENAFDLLPRIK--KARPDLPVLVMS 82
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 5e-22 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Query: 11 AAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDG 70 A ILV DDD +R L L + G+ V + +N A ++V+ D VMP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 71 FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLY 130 F + K P VL+++ + + +A E GA DY+ KP L + R L Sbjct: 63 FDLLPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 131 QNRLQHQ 137 + + + Sbjct: 121 EPKRRPS 127
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 99.3 bits (247), Expect = 5e-28 Identities = 53/117 (45%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 85 ENSANIVTTESGLQYIDEVVGEGPSPTKGQKVEVHYTGRLTDGTKFDSSVDRNKPFTFTI 144 ++ IV SGLQY G G P K V V YTG L DGT FDS+ KP TF Sbjct: 116 KSKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQ- 174 Query: 145 GVGQVIKGWDEGVATMQVGGKRKLIIPPDLAYGSRGAGGVIPPNATLEFEVELLGIK 201 V QVI GW E + M G ++ +P DLAYG R GG I PN TL F++ L+ +K Sbjct: 175 -VSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 2e-15 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 800 TTILVIDDSVTVRRTLQRVLGG-SFRLIQCRDGKEAWDLLNRQNQGIDLALCDIEMPNMD 858 TILV DD +R L + L + + + W + DL + D+ MP+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI--AAGDGDLVVTDVVMPDEN 61 Query: 859 GFSLLQLVRAHRVWHSLTVVMLTSRENPLHRNRAKALGADGYLTKPFQPNQLLSTIDQFL 918 F LL ++ L V++++++ + +A GA YL KPF +L+ I + L Sbjct: 62 AFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 919 AESAQR 924 AE +R Sbjct: 120 AEPKRR 125
>OMS28PORIN#OMS28 porin signature. Length = 257 Score = 34.4 bits (78), Expect = 0.002 Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 33/232 (14%) Query: 577 EVESKDEVGQLAVTFNAMAEQVEASTRSLQETSLERQQEAEKQRQLKEELQDGVVRLLTD 636 +++ KD+V Q T N + E V + ++E+SLE L E GVV+ Sbjct: 49 KLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLE----------LVESNDAGVVKKFV- 97 Query: 637 IEESSRGDLTVRSSVEAGAVGAIADAFNATLAGLRKLVKQVVDTATEVSGQAQEDSQEIT 696 G +++ S V G V A +A +A +V + + E+S +A +++Q+ Sbjct: 98 ------GSMSLMSDVAKGTVVASQEA--TIVAKCSGMVAEGANKVVEMSKKAVQETQKAV 149 Query: 697 SLSDNA--LEQARALEFATASVAEMAQSIESVAISAQTAAAIAKQGNEAAQQGQNTMDET 754 S++ A L + + + + + E+ + E A +Q E + +DET Sbjct: 150 SVAGEATFLIEKQIMLNKSPNNKELELTKEEF--------AKVEQVKETLMASERALDET 201 Query: 755 VESIYKVRGRVAEI--SKKSKRLAESSL--EISKIVGIISGISEKTNLLAFN 802 V+ KV V + S K + LA+ + IS +V + G + T ++A + Sbjct: 202 VQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVVKVAQGARDLTKVMAIS 253
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 176 bits (448), Expect = 8e-60 Identities = 44/138 (31%), Positives = 69/138 (50%) Query: 16 IAESLKKLLADTYTLYLQTHNFHWNVTGPQFRDLHLMFEEQYNELALAVDDIAERIRSLD 75 + SL L++ + LY + H FHW V GP F LH FEE Y+ A VD IAER+ ++ Sbjct: 13 VENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETVDTIAERLLAIG 72 Query: 76 VFAPGTYKEFAKLSSVQEVDGIPTSKEMVDILTKGHETIVQSCRDVLKCSQPADDESTIA 135 T KE+ + +S+ + ++ EMV L ++ I + V+ ++ D +T Sbjct: 73 GQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVIGLAEENQDNATAD 132 Query: 136 LASDRMRVHEKTAWMLRA 153 L + EK WML + Sbjct: 133 LFVGLIEEVEKQVWMLSS 150
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 28.7 bits (64), Expect = 0.042 Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 2/45 (4%) Query: 24 LHFRDFSDDNKLKLRRWAFWAMAIAVFVGIISGSWLTSPGGSVGL 68 L + RW + A+ + I S G + G+ Sbjct: 5 LKL--VPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGI 47
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 42.4 bits (99), Expect = 2e-06 Identities = 73/302 (24%), Positives = 123/302 (40%), Gaps = 36/302 (11%) Query: 132 PSIWQANSLGNGEVFGFPWYLTTRITIYNQDLLQQAGLSTPPATFAELAVAAREIKAKTG 191 P W A NG++ +P + IYN+DLL PP T+ E+ +E+KAK Sbjct: 117 PFTWDAVRY-NGKLIAYPIAVEALSLIYNKDLL-----PNPPKTWEEIPALDKELKAKGK 170 Query: 192 KYGFFVTFSP--------SDSAEALESLVQMGVQLVDSDGRATFNSPAGKVAFQYWVDLY 243 F P +D A + + G + G ++ K + VDL Sbjct: 171 SALMFNLQEPYFTWPLIAADGGYAFK--YENGKYDIKDVG---VDNAGAKAGLTFLVDLI 225 Query: 244 QQGLLPPEVLTEGHRRAGDLYQSGAIAFLSAGPELLASLEKNAPSIAKVSAAAPQIVGET 303 + + + + A + G A GP ++++ + + P G+ Sbjct: 226 KNKHMNADT---DYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYG--VTVLPTFKGQP 280 Query: 304 GKRNVAVMNLVIPRSTKNPTGAIKFAEFVTNTDNQFAFIKEANVLPSTIGAVDKYRQELA 363 K V V++ I ++ N A +F E TD + + L + A+ Y +ELA Sbjct: 281 SKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAV--ALKSYEEELA 338 Query: 364 QISN-ASSLENARRVALEQLPTAEVLIPPMANLNQLKRIIYENLGAAMVGNKTVDQALQD 422 + A+++ENA++ E +P IP M+ R N A G +TVD+AL+D Sbjct: 339 KDPRIAATMENAQKG--EIMPN----IPQMSAFWYAVRTAVIN---AASGRQTVDEALKD 389 Query: 423 AE 424 A+ Sbjct: 390 AQ 391
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 53.3 bits (128), Expect = 3e-10 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 157 VDARVVETLVKSGY---------IPVISSVAADEFGQAHNINADTCAGELAAALGAEKLI 207 V+A ++ LV+ G +PVI + G I+ D +LA + A+ + Sbjct: 174 VEAETIKKLVERGVIVIASGGGGVPVILEDGEIK-GVEAVIDKDLAGEKLAEEVNADIFM 232 Query: 208 LLTDTRGILRDYKDPS-TLIHKLDIQQARELIGSG-IVAGGMIPKVTCCVRSLAQGVRAA 265 +LTD G Y + ++ +++ R+ G AG M PKV +R + G A Sbjct: 233 ILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERA 292 Query: 266 HI 267 I Sbjct: 293 II 294
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 2e-19 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%) Query: 3 TKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62 IL+ +D+ + + Q L GY+ I S+ AT + IA DLV+ D+ + E + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYD-VRITSNAATLWRWIAAGDGDLVVTDVVMPDE-N 61 Query: 63 GIEVAERIKSLYS-IPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIAN 121 ++ RIK +P++ ++A + T +A + Y+ KPF +L+ + A+A Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 122 HQQQRKPEEDTLSTSTG 138 +++ ED Sbjct: 122 PKRRPSKLEDDSQDGMP 138
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 49.1 bits (117), Expect = 1e-08 Identities = 18/117 (15%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 249 VISVNNRPSVQKIVREILGQRGFKVVCIDDPCHALAAAISHNPQLILIDAEMPEISGYEL 308 ++ ++ +++ ++ + L + G+ V + + + L++ D MP+ + ++L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 309 CRLLRKSSAVRETPIILLNQNDGVMEQIQGRLAKASGQINKQFLSQELLQVRKNYLD 365 ++K+ + P+++++ + M I+ A + K F EL+ + L Sbjct: 66 LPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 52.1 bits (125), Expect = 9e-10 Identities = 57/301 (18%), Positives = 90/301 (29%), Gaps = 65/301 (21%) Query: 33 MKIILTGATGFVGCSLVPLLHQQGHELTLLVRSVSKAQRLFAPGSFPQLKAIAYEATKSG 92 MK ++TGA GF+G + L + GH+ V + LK E Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQ----VVGIDN----LNDYYDVSLKQARLELLAQP 52 Query: 93 DWQKV--------------VDGQ-DAVINL---AGEPISERWTEAYKAEIFDSRKLGTEK 134 +Q G + V S AY DS G Sbjct: 53 GFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYA----DSNLTGFLN 108 Query: 135 LVEAIAKADRKPQVMISGSAIGYYGTSETATFTESSKPGD--DFLAEVCQAWENAAHQVE 192 ++E + + S S++ YG + F+ A +A E AH Sbjct: 109 ILEGCRHNKIQHLLYASSSSV--YGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS 166 Query: 193 QL-GVRLVVFRIGIVLGADGGALAKMLPPF---KLFAGGPL---GSGEQW--FSWIDRRD 243 L G+ R V G G M + G + G+ F++ID D Sbjct: 167 HLYGLPATGLRFFTVYGPWGR--PDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYID--D 222 Query: 244 LIALIDKAL--------TDSTLRGT----------YNATAPNPVKMKEFCHTLGKVLARP 285 + I + + GT YN +PV++ ++ L L Sbjct: 223 IAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 286 S 286 + Sbjct: 283 A 283
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.3 bits (78), Expect = 0.001 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 9/56 (16%) Query: 43 MVLVGPSGCGKSTLLRLIAGLETVTGGNILIGDRRVNDLPPKARDIAMVFQSYALY 98 +VL G G GKSTL+ + GL+ + + IG +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTG---------KDSYEQIAGIVAY 645
>YERSSTKINASE#Yersinia serine/threonine protein kinase signature. Length = 732 Score = 33.6 bits (76), Expect = 0.002 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 164 VRWVLTEMLKILSFVHGTGAIHRDIKPSNLMRDQ-EGKLYLLDFGAVKQATAGVGASNEG 222 ++++ +L + + + G +H DIKP N++ D+ G+ ++D G + S E Sbjct: 247 IKFIAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSR-------SGEQ 299 Query: 223 STGIYSMGFAPPEQMAGN-QVYPATDLYALAVTCLYLLTG 261 G ++ F PE GN +D++ + T L+ + G Sbjct: 300 PKG-FTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEG 338
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.5 bits (89), Expect = 1e-04 Identities = 48/278 (17%), Positives = 88/278 (31%), Gaps = 50/278 (17%) Query: 86 LNGENGEISVIPPEIEQIDGDRLGQTMEISAGNLDVGVDDLPPMAPVDSAELAQANELP- 144 L NG + PE+E+ QT++ + + P P ++ E+A+ +E P Sbjct: 971 LRNVNGRYDLYNPEVEK-----RNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPV 1025 Query: 145 ----------HGNAVAQVAPRVAQVEQEN-----------------LIAETKTDNQTDHV 177 VA+ + + ++ ++N + K + QT+ V Sbjct: 1026 PPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEV 1085 Query: 178 EPQSPLMAQAAVEEEVEAVEMEATEETTGVTEETPEETPSFTPDAPP-----------TN 226 + E E +E E+ TE+T E P T P Sbjct: 1086 AQSGSETKETQTTETKETATVEKEEKAKVETEKTQEV-PKVTSQVSPKQEQSETVQPQAE 1144 Query: 227 TEGTPGPTQTLPSFTPPASPSTTTPAPAEEEPRVLVSEVLVTGTTPELELLVYNAIR--- 283 PT + + + T PA+E + V + T +V N Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 284 --TQPGRTTTRTQLQEDVNAIYATGYFSNVRVAPSDTP 319 TQP + + ++ + NV A + + Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSN 1242
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 220 bits (562), Expect = 3e-66 Identities = 120/462 (25%), Positives = 205/462 (44%), Gaps = 53/462 (11%) Query: 25 RRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVKARRSQRSATSDWMAMEQQRGISIT 84 + N +++H DAGKTTLTE LL GAI E G+V + +D +E+QRGI+I Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG----TTRTDNTLLERQRGITIQ 57 Query: 85 STVLQFDYRGKILNLLDTPGHQDFSEDTYRTLAAADNAVMLIDAAKGLETQTRKLFEVCR 144 + + F + +N++DTPGH DF + YR+L+ D A++LI A G++ QTR LF R Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 145 LRHLPIFTFINKLDRPSLTPLELMDEIEQELGMNTYAVNYPIGTGDRFRGVYNRLTKTIH 204 +P FINK+D+ + + +I+++L + V L + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK----------QKVE--LYPNMC 165 Query: 205 LFERTGTHGSKKAADQTMALDDPALESLLGSDVYAEFQDELELIEEAGAEFDLAAVHGGE 264 + T + + D + +D LE + L + + H Sbjct: 166 VTNFTES----EQWDTVIEGNDDLLEKYMSGK---------SLEALELEQEESIRFHNCS 212 Query: 265 MTPVFFGSAMNNFGVELFLQAFLQYAAKPEAHDSNRGTIEPTYEEFSGFVFKLQANMDPK 324 + PV+ GSA NN G++ ++ + E G VFK++ K Sbjct: 213 LFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQS---------ELCGKVFKIE--YSEK 261 Query: 325 HRDRIAFLRVCSGKFEKDMVVKHPRTGKTVRLSRPQKLFAQERESVDIAYAGDVIGLNNP 384 R R+A++R+ SG V+ K ++++ E +D AY+G+++ L N Sbjct: 262 -RQRLAYIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNE 319 Query: 385 GA---FTIGDTV--HTGEKIIYPPIPSFSPELFAYLRSTDPSQYKNFKKGVSELQEEGAV 439 +GDT E+I P P L + + P Q + + E+ + + Sbjct: 320 FLKLNSVLGDTKLLPQRERIENPL-----PLLQTTVEPSKPQQREMLLDALLEISDSDPL 374 Query: 440 QILQSLDESKRDPILAAVGQLQFEVVQYRLQEEYGVETRLEP 481 + +D + + IL+ +G++Q EV LQE+Y VE ++ Sbjct: 375 -LRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKE 415
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 64.9 bits (158), Expect = 5e-16 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 13 LSKKRAEGGFTLIELLVVVIIIGVLAAIALPNLLGQVGKARESEAKSTIGALNRAQQGYF 72 + + GFTL+E++VV++IIGVLA++ +PNL+G KA + +A S I AL A Y Sbjct: 1 MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYK 60 Query: 73 TEKGTFATDTETLE--VPAPDGN 93 + + T + LE V AP Sbjct: 61 LDNHHYPTTNQGLESLVEAPTLP 83
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 28.5 bits (63), Expect = 0.011 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Query: 2 DSLLYTEDFFTWTQQQADLLSQKRFEQLDLEHLIEEIQDLGNRHYDQLESRLMVLVAHLL 61 S L T + L++ R ++ + +Q L ++ + LES VL Sbjct: 958 TSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALKDQRFASLESAAEVLYQFAP 1017 Query: 62 KWQVQHWKRTNSW 74 K++ K TN W Sbjct: 1018 KYE----KPTNVW 1026
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 30.1 bits (67), Expect = 0.003 Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 61 YQSIVAESMRKGEQQGLERGLKLGLQRGEQRGES 94 YQ+ +AE ++G +QG + GL GL++G +S Sbjct: 56 YQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKS 89
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-17 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 11/154 (7%) Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831 +LV DD+ R V+ L + + V + ++A +V D MP+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAG-----DGDLVVTDVVMPD 59 Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLAR 891 + ++ R+K + +++A +KA G D L KP + L + R Sbjct: 60 ENAFDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 892 VLGDPTALAQEM----RQSSGIGAEDLALEKLRR 921 L +P ++ + + A++++ R Sbjct: 118 ALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151 Score = 71.0 bits (174), Expect = 1e-14 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 924 GARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDG 983 GA IL+ +D+ + V + L G++V + +N + LV+ D+ MP+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 984 IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034 + I++ LP++ M+A + + G D+L KP + EL Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 4e-19 Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 10 KATVLIVDDSPDTLTMLSGLLKDH-YRIKIASKGEQALAIAASMPPPDLILLDIMMPEID 68 AT+L+ DD T+L+ L Y ++I S A+ DL++ D++MP+ + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMPDEN 61 Query: 69 GYEVCTKLKADTQTKNIPVIFLTAKTDVADEQHGFSLGAVDYITKPISPPILLARVRTHL 128 +++ ++K ++PV+ ++A+ GA DY+ KP L+ + L Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 129 NLKAAYDRLTRLLKFREDMVNMI 151 R ++L +D + ++ Sbjct: 120 AEPKR--RPSKLEDDSQDGMPLV 140
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.1 bits (208), Expect = 6e-20 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 4/161 (2%) Query: 9 SKATILVVDDTPDNLALMSGLLKDY-YRVKIANNGEKALKVAQTLPPPDLILLDIMMPGI 67 + ATILV DD +++ L Y V+I +N + DL++ D++MP Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAA-GDGDLVVTDVVMPDE 60 Query: 68 DGYEVCAHLKANPATQRIPVIFLTAKSEIEDERKGLALGAVDYITKPVSPPILMARVNTQ 127 + +++ +K A +PV+ ++A++ K GA DY+ KP L+ + Sbjct: 61 NAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 128 LTIKAAADFLLDKNAFLEQEVARRTQEMMAIQDVTIQVMAS 168 L L+ ++ + R+ M I V ++M + Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQT 159
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 77.6 bits (191), Expect = 8e-17 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 715 LEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPML 774 + GA+IL+ +D+ R + L+ G V++ +N + + D ++ D+ MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 775 NGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPD 825 N +D I+ + +LP++ M+A KA + G D+L KP Sbjct: 61 NAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 35.9 bits (82), Expect = 5e-04 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 11/97 (11%) Query: 400 DLQPNPETDLLGPFDVAVALTREGKEVSSAKEMETGNNTEPEEINPSPSPPVSPSPSPTG 459 D+Q P DL P + EVS A+ NN P E NP P +P P P Sbjct: 306 DVQVIPRPDLT-PGSAEAPNAQPLPEVSPAEN--PANNPAPNE-NPGTRP--NPEPDPDL 359 Query: 460 NGTNQPEAMPENDSNQAGDREESPAGENEDSGNDQAQ 496 N P+A P+ D Q G R +SPA + +G + + Sbjct: 360 N----PDANPDTDG-QPGTRPDSPAVPDRPNGRHRKE 391
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 129 bits (325), Expect = 9e-34 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 29/251 (11%) Query: 157 RAIMGKSRYAQKLREQIKAVSTDQKPVLLFGEPGLEKDNTAALIHFGSAQAQRSVMVKVN 216 ++G+S Q++ + + +++ GE G K+ A +H + V +N Sbjct: 137 MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGP-FVAIN 195 Query: 217 CALLSAS--GQELFGTNQG--------KPGILDALGQGTLLLNNIQELKPQLLPAIANLI 266 A + ELFG +G G + GTL L+ I ++ + ++ Sbjct: 196 MAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVL 255 Query: 267 CEGIYQPVATAGGAEPTFRHSQAKVIAIAENIIPKLTS-----------LFTNTIKIPPL 315 +G Y V GG P S +++A + + + L +++PPL Sbjct: 256 QQGEYTTV---GGRTP--IRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPL 310 Query: 316 RVRKADIEDYVDYYLSLICRSKGIEVPNLAPEALRRLQAYDFPNNIRELNNLVERAVTQL 375 R R DI D V +++ + +G++V EAL ++A+ +P N+REL NLV R Sbjct: 311 RDRAEDIPDLVRHFVQQAEK-EGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALY 369 Query: 376 QGEKVITEEII 386 + VIT EII Sbjct: 370 PQD-VITREII 379
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.021 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 6/93 (6%) Query: 63 LWASMLVRYKADSLHNLEQEPEEVLPEAELEE--WPDGLIARLPRDLENRLRRRTAVPPL 120 L+A L Y A + E EE+ E E G+ RL L R A Sbjct: 729 LFAEALHLYLAGERYFPSPEDEEIYFRPEQELRLVETGVQGRL-WALLTREGAPAAEGAA 787 Query: 121 QRR---RVTLAELIDQIEAIAVEIEKSEQKPKR 150 Q+ T + D ++A+ + KS + Sbjct: 788 QKGYSVNTTFVTIADLVQALGADPGKSSPMLEG 820
>PF07132#Harpin protein (HrpN) Length = 356 Score = 29.3 bits (65), Expect = 0.032 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 404 GSGHSETDVSKLITNFTKMRTMMQQMGMGGMPGGMPGMG-AMPGMGGGMFGGQPGPGFRG 462 G +++++ +++ M M GG+ GG+ G+G ++ G+GGG+ GG G G Sbjct: 39 AFGGQRSNIAEQLSDIMTTMMFMGSMMGGGLGGGLGGLGSSLGGLGGGLLGGGLGGGLGS 98 Query: 463 YRGGGG 468 G G Sbjct: 99 SLGSGL 104
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 26.0 bits (57), Expect = 0.013 Identities = 4/25 (16%), Positives = 11/25 (44%) Query: 31 AMNAYMFFRRQRDWLNQQGLRLIKV 55 + + + + + D L + L K+ Sbjct: 283 LLENFYYAKDKSDRLKSKSSDLQKI 307
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 33.2 bits (75), Expect = 0.002 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 16/128 (12%) Query: 13 VGALVFLGCGYPVAFSLGGVAILFAIIGAALGSFDPIFLSA-----MPQRIFGIMANGTL 67 +GAL+ + F+ GG ++ A +G A+ D I +A + Q + IM + Sbjct: 321 LGALLTIVSVVAAVFT-GGASLALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEH--- 376 Query: 68 LAIPFFIFLG----SMLERSGIAEQLLETMGIILGHLRGGLALAVILVGTMLAATTGVVA 123 + P +G LE G+ ++ E G I+G + +A+ ++V + A G A Sbjct: 377 VLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIV---VVAVVGKGA 433 Query: 124 ATVVAMGL 131 A + L Sbjct: 434 AAKLGNAL 441
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 78.0 bits (192), Expect = 1e-17 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 11/153 (7%) Query: 13 VNIGTIGHVDHGKTTLTAAI---TMTLAELGGAKARKYEDIDAAPEEKARGITINTAHVE 69 +NIG + HVD GKTTLT ++ + + ELG D E+ RGITI T Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTR-TDNTLLERQRGITIQTGITS 62 Query: 70 YETDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVP 129 ++ ++ +D PGH D++ + + +DGAIL++SA DG QTR +++G+P Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122 Query: 130 KLVVFLNKKDM--VDDEELLELVELEVRELLSD 160 + F+NK D +D + + +++E LS Sbjct: 123 T-IFFINKIDQNGIDLSTVYQ----DIKEKLSA 150
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 778 bits (2011), Expect = 0.0 Identities = 184/669 (27%), Positives = 308/669 (46%), Gaps = 65/669 (9%) Query: 9 RIRNIGIAAHIDAGKTTTTERILFYSGVVHKIGEVHEGTAVTDWMAQERERGITITAAAI 68 +I NIG+ AH+DAGKTT TE +L+ SG + ++G V +GT TD ER+RGITI Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 STDWLGHHINIIDTPGHVDFTIEVERSMRVLDGVIAVFCSVGGVQPQSETVWRQAERYQV 128 S W +NIIDTPGH+DF EV RS+ VLDG I + + GVQ Q+ ++ + + Sbjct: 62 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 121 Query: 129 PRIAFVNKMDRTGANFFRVCQQIGDRLRANAVPVQIPIGSEAEFEGIVDLVRMKAYLYKN 188 P I F+NK+D+ G + V Q I ++L A V ++ K LY N Sbjct: 122 PTIFFINKIDQNGIDLSTVYQDIKEKLSAEIV------------------IKQKVELYPN 163 Query: 189 DLGTDIQEVPIPDSVKDKTEEYRLRLVESVAEADDALMEKYLEGEELTADELVAGLRRGT 248 T+ E +E++ ++V E +D L+EKY+ G+ L A EL Sbjct: 164 MCVTNFTE----------SEQW-----DTVIEGNDDLLEKYMSGKSLEALELEQEESIRF 208 Query: 249 IAGTMVPVLCGSAFKNKGVQLLLDAVVDYLPSPLEVPAIEGHLPDGEVATRPAEDKAPLS 308 ++ PV GSA N G+ L++ + + S ++ L Sbjct: 209 HNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTH------------------RGQSELC 250 Query: 309 ALAFKV-MADPFGRLTFVRVYSGVLEKGSYVLNSTKEKKERISRLIILKADDRIEVDQLN 367 FK+ ++ RL ++R+YSGVL V S KEK +I+ + + ++D+ Sbjct: 251 GKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI-KITEMYTSINGELCKIDKAY 309 Query: 368 AGDL----GAVLGLKDTLTGDTLCDDQEPIILESLFVPQPVISVAVEPKTKQDMDKLSKA 423 +G++ L L L GDT Q E + P P++ VEP Q + L A Sbjct: 310 SGEIVILQNEFLKLNSVL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLDA 364 Query: 424 LQSLSEEDPTFRVSVDPETNQTVIAGMGELHLEILVDRMLREFKVEANVGAPQVAYRETI 483 L +S+ DP R VD T++ +++ +G++ +E+ + ++ VE + P V Y E Sbjct: 365 LLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME-- 422 Query: 484 RKAVQAEGKFIRQSGGKGQYGHVVIEVEPTEPGTGFEFVSKIVGGVIPKEYIAPSEQGMK 543 R +AE + + + + V P G+G ++ S + G + + + +G++ Sbjct: 423 RPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIR 482 Query: 544 EACASGVLAGYPVIDLKATLVDGSFHDVDSSEMAFKIAGSMAIREAVGQADPVLLEPVMK 603 C G L G+ V D K G ++ S+ F++ + + + + +A LLEP + Sbjct: 483 YGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLS 541 Query: 604 VEIEVPDDFMGNVIGDLNARRGHIEGQETEQGIAKVAASVPLAEMFGYATDIRSKTQGRG 663 +I P +++ D +I + + ++ +P + Y +D+ T GR Sbjct: 542 FKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRS 601 Query: 664 IFSMEFSHY 672 + E Y Sbjct: 602 VCLTELKGY 610
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.4 bits (97), Expect = 9e-06 Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 18/200 (9%) Query: 173 QAKQALTARQQSEQNRLQRLDFLTYQLQELTEAELTDGDEWELLIQEQEKLSHVVELQQL 232 Q+ + + EQ R Q L + +L +L E +L D ++ + +E+ + +Q Sbjct: 137 LKTQSSLLQARLEQTRYQILSR-SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF 195 Query: 233 S------YQATQLLYQSERDTPAIADLLGDAEGQLQTMAEFDSSLNPLLELVQTALTQVI 286 S YQ L + + + + E + + LL A V+ Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVL 255 Query: 287 EAGRQVQRYGDNLEADPERLGEVEARLQVLKRICRKYGPSLTEAIAYQEKIQAE-YDQLT 345 E + + L +L ++E+ + K E + + E D+L Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAK----------EEYQLVTQLFKNEILDKLR 305 Query: 346 DGEQSLAQLQESLTKAEQEL 365 ++ L L K E+ Sbjct: 306 QTTDNIGLLTLELAKNEERQ 325
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 52.4 bits (125), Expect = 3e-09 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%) Query: 481 PSPTLTSFSSWSQIDSSLADDDAITEPPIYTGSFLTASSSPSPSPSPSPSPSPSPSPSPS 540 P + +F SQ ++++ D I P + GS + +P+ P P SP+ +P+ +P+ Sbjct: 288 PVQVVATFGRDSQGNTTV-DVQVIPRPDLTPGS----AEAPNAQPLPEVSPAENPANNPA 342 Query: 541 PSPSPSPSPSPSPSPSPSPSPSPSPSPSPSPSPSPSPTPVTVNVQNKKACDD 592 P+ +P P+P P P +P +P P P P N +++K + Sbjct: 343 PNENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPAVPDRPNGRHRKERKE 394
>SHIGARICIN#Ribosome inactivating protein family signature. Length = 289 Score = 26.7 bits (59), Expect = 0.012 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 15/56 (26%) Query: 33 SDHVPTIITRDTQPSVVMISLEDYQSLEETAYLLRSPNNAQKLMSAIKQLENDQGV 88 + + + PS+ +ISLE N+ L I+ + G Sbjct: 191 EQQIGKRVDKTFLPSLAIISLE---------------NSWSALSKQIQIASTNNGQ 231
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 31.4 bits (71), Expect = 0.004 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 9/79 (11%) Query: 122 LTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPG--FTSIN-------SSTDFV 172 +T+ + G F VL G V + V+N F + Sbjct: 151 MTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGS 210 Query: 173 GDFNVPSYRGAGFLDPKAR 191 +F + ++RGA + P + Sbjct: 211 SNFALHTFRGAAYSTPDEK 229
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 39.4 bits (92), Expect = 1e-05 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 16/125 (12%) Query: 1 MRVLVVGGTGTLGRQIVRQAIDQGHTVVCL---------VRSLRKAAFLKEWGATIVGGN 51 M+ LV G G +G + ++ ++ GH VV + + L + G + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 ICKPETLSPALEN--IDAVID-ASTARATDSL----TIRQVDWEGKLNLIRAVQKAGIKK 104 + E ++ + + V SL + G LN++ + I+ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 105 FVFFS 109 ++ S Sbjct: 121 LLYAS 125
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 33.1 bits (75), Expect = 0.002 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Query: 161 WAVPYRWGPTMIIYRQQPFADLGWQPTDWSDLWRPELKQ-------RIALVDDPREAIGL 213 WAVPY + +YR + ++L + W+D+ + +K R+ +DD R L Sbjct: 142 WAVPYFLQNLVFVYRGEKISELEQENVSWTDVIKAIVKHKDRFNDNRLVFIDDARTIFSL 201
>cloacin#Cloacin signature. Length = 551 Score = 28.9 bits (64), Expect = 0.031 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 10/47 (21%) Query: 54 GGGSFRAPSAPSRSYSGPSGGSYRSGGTYGGGG----------FGFP 90 GGGS S G GG+ SGG G GG FGFP Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFP 93
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 27.8 bits (61), Expect = 0.039 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%) Query: 34 ASSRYVSSREIELVLQSLTAHNKRSAIGVFANVSLPKLGEFLAQTSLNGIQLHGDESPDF 93 A +++ + R+ E +++ S V + +LPK A+ L I +HG DF Sbjct: 61 ALAQFRNRRDYE----KKSSNLSNSFERVLEDEALPK-----AKQILKLISVHGGALEDF 111 Query: 94 CRQVKQAFPQ-HRLIKALR-LRRSADLE 119 RQ + FP L+ LR L R DLE Sbjct: 112 LRQARSLFPDPSDLVLVLRELLRRKDLE 139
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 27.9 bits (62), Expect = 0.046 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 14/65 (21%) Query: 135 RAIRHL-EKGRVVIFGAGSGNPFFTT-------------DTTAALRAAEIDAEVVFKATK 180 I+ L E+G +VI G G P D A E++A++ T Sbjct: 177 ETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTD 236 Query: 181 VDGVY 185 V+G Sbjct: 237 VNGAA 241
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 5e-07 Identities = 49/261 (18%), Positives = 81/261 (31%), Gaps = 47/261 (18%) Query: 567 METERQKLLQLEGHLHQRVIGQKEAVAAVSAAIRRARAGMKDPSRPIGSFLFMGPTGVGK 626 R L+ + ++G+ A+ + + R + + G +G GK Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL-------TLMITGESGTGK 173 Query: 627 TELARALAGFLFDSEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLSEAVRRRPY 686 +ARAL + V I+M+ S L G E G + A R Sbjct: 174 ELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTG 225 Query: 687 SV-------VLLDEVEKAHLDVFNILLQVLDDG---RITDSQGRVVDFRNTIIVMTSNIG 736 + LDE+ +D LL+VL G + D R IV +N Sbjct: 226 RFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN-- 280 Query: 737 SDHILSLSADDADYDKMQKQVLQSLRKHFRPEFLNRIDDLIIFHTLKRDELRRIVVLQIK 796 D + Q FR + R++ + + RD I L Sbjct: 281 -----------KDLKQSINQ------GLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRH 323 Query: 797 RIEKLLDEQKITLSLSDAALD 817 +++ E AL+ Sbjct: 324 FVQQAEKEGLDVKRFDQEALE 344 Score = 39.0 bits (91), Expect = 8e-05 Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 43/204 (21%) Query: 137 DLELAIKAIRGSQKVTEPNQEEKYEALDKYGRDLTEQARQGK--------LDPVIGRDEE 188 AIKA P + E + GR L E R+ P++GR Sbjct: 86 TFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAA 145 Query: 189 IRRVIQVLSRRSKNN-PVLI-GEPGVGKTAIAEGLAQR----------IINGDVPESLKN 236 ++ + +VL+R + + ++I GE G GK +A L I +P L Sbjct: 146 MQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIE 205 Query: 237 RQLISLDMGSLI-AGAKYRGEFEERLRSVMKEVTNSDGQIILFIDEVHTVVGAGGREGSG 295 +L + G+ A + G FE+ ++G LF+DE+ G Sbjct: 206 SELFGHEKGAFTGAQTRSTGRFEQ-----------AEGG-TLFLDEI----------GDM 243 Query: 296 SMDAGNLLKPMLARGELRCIGATT 319 MDA L +L +GE +G T Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRT 267
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 815 bits (2106), Expect = 0.0 Identities = 262/1067 (24%), Positives = 471/1067 (44%), Gaps = 65/1067 (6%) Query: 10 LSGLAIRRHIATLMLTLAIIVLGVFAVFSLPVDLLPSITYPRIGVRLDAPGVSPEVAVDE 69 ++ IRR I +L + +++ G A+ LPV P+I P + V + PG + D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 70 ITRPLEAALSATEGVVQVYSQT-REGQISLDLFFEPGGNIDQALNDATATFNRARNQLPD 128 +T+ +E ++ + ++ + S + G +++ L F+ G + D A A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 129 DLETPRLF--KFDPSQLPVYEFAVTSPELSGPSLRVFAEEELARELGVVPGVASVNVSGA 186 +++ + K S L V F +P + + + + L + GV V + GA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 187 AQEEVRINVDLQRLQRSGVSLTQVLDALQSRNVDISGGRIVGTESEP------LTRTVGR 240 Q +RI +D L + ++ V++ L+ +N I+ G++ GT + P R Sbjct: 181 -QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 241 FASAQEIEDLVVGTVSGLEDQSAQKVYLRDVATVIDGTEEERIFVTLNGNPAVKVSVQKQ 300 F + +E + + + V L+DVA V G E + +NG PA + ++ Sbjct: 240 FKNPEEFGKVTL-----RVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLA 294 Query: 301 PEANTIEVVDGVKKRLEELRTEGIIPQAAELTPTLDDSVFIRNSVNNVVVSGLIGTVLAA 360 AN ++ +K +L EL+ PQ ++ D + F++ S++ VV + +L Sbjct: 295 TGANALDTAKAIKAKLAELQP--FFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVF 352 Query: 361 IAVLLFLGSLRQTLIIVLAIPLATMAAIIVMKAFGLSLNVFSLGGLALGVGIVVDNSIVM 420 + + LFL ++R TLI +A+P+ + ++ AFG S+N ++ G+ L +G++VD++IV+ Sbjct: 353 LVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVV 412 Query: 421 LETIAEGAGMTPGKVNPLPLTKGEMRNQAIASSQTVESALVASTSTNLVAVLPFLMIGGF 480 +E + M K+ P T+ M ++ ALV +P GG Sbjct: 413 VENVERV--MMEDKLPPKEATEKSMSQ--------IQGALVGIAMVLSAVFIPMAFFGGS 462 Query: 481 IALIFNELILTISFAVAASILVAVTLVPMAASRLLAIR------RRSGLGNWLFFREFNR 534 I+ + +TI A+A S+LVA+ L P + LL + G W F F+ Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW-FNTTFDH 521 Query: 535 RFAGATAAYARFLSILIRHRLVAVASIFIVFGGSSLWMIGQIPQEILPRINTGQASMFAQ 594 T + + L R+ L+ IV G L++ ++P LP + G Q Sbjct: 522 SVNHYTNSVGKILGSTGRYLLIYA---LIVAGMVVLFL--RLPSSFLPEEDQGVFLTMIQ 576 Query: 595 FPPGTPLEENQRLM-AIVDDILINQPETEYAFTTVGGFLFGSNVNANALRSSSTITLKPN 653 P G E Q+++ + D L N+ + TV GF F + + ++LKP Sbjct: 577 LPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGM---AFVSLKP- 632 Query: 654 TDVEAFTERVTAELEALNLVDIRLRMAPGQLRGLILSNSPLRNVDVDVVLQGNDADVLDE 713 + ER E A ++ R +M G++R + + + G D +++D+ Sbjct: 633 -----WEERNGDENSAEAVIH-RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQ 686 Query: 714 AG--RAVLAELGEKV---------TLARFRPDADPRQPEVQIRPDWQRATELGLTTQAIG 762 AG L + ++ +L RP+ + ++ D ++A LG++ I Sbjct: 687 AGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDIN 746 Query: 763 QTVQTALDGAVPTQLQRENRLVDVRVKLDNDLLSGPGDLAQIPLFIDGDRPIRLGDVATI 822 QT+ TAL G R+ + V+ D P D+ ++ + + T Sbjct: 747 QTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTS 806 Query: 823 DQGRAPGEIQRINQRPVFLIAGTLVEGASLSEALTEVDQVLSAMEFPPGVSRLPSTAAAS 882 ++R N P I G G S +A+ ++ + S + P G+ T + Sbjct: 807 HWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKL--PAGIG-YDWTGMSY 863 Query: 883 NEQLQ-SSLVILGGLAAFLVFVVMAVQYNSLLDPLVIMFTLPLALAGGILGLYVTQTAIG 941 E+L + L ++ +VF+ +A Y S P+ +M +PL + G +L + Sbjct: 864 QERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKND 923 Query: 942 ATVIVGTVLLVGIVVNNAIIMVELANQIWAEEGISREAAILRAAPQRLRPILMTTITTVL 1001 +VG + +G+ NAI++VE A + +EG A L A RLRPILMT++ +L Sbjct: 924 VYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFIL 983 Query: 1002 GMFPLALGIGQGSELLQPLGIVVFSGLSLATLLTLFLIPCLYVLLHQ 1048 G+ PLA+ G GS +GI V G+ ATLL +F +P +V++ + Sbjct: 984 GVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 73.7 bits (181), Expect = 3e-16 Identities = 52/263 (19%), Positives = 103/263 (39%), Gaps = 13/263 (4%) Query: 107 EDDLLLGAVDQAKAEKMAQRSEVLTAQSQVGDAQIRVEQARLQLQQAQADIIRLETSLNA 166 E L Q +E+ R L + Q Q + Q L L + +A+ + + +N Sbjct: 167 ELKLPDEPYFQNVSEEEVLRLTSL-IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINR 225 Query: 167 RIEQARLEVDQTQADAARFRLLAEEGAGGAQQAEQAETRARQAKEILRNEQASASQQLSQ 226 +R+E + F L + A + E + +A LR ++ Q S+ Sbjct: 226 YENLSRVEKSRL----DDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESE 281 Query: 227 AKTAAKTASQILNSAIAQVQIEQQRVGAATAQMNAQRASIEQAQTRQQYATVRAPFPGRV 286 +A + + ++ + ++ + + A E+ RQQ + +RAP +V Sbjct: 282 ILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE---RQQASVIRAPVSVKV 338 Query: 287 LR-RLSEPGNLVQPGTEILQL-GDFRQLEIDVQVSELQLAQIALQQKVNVKLDAFPGQTF 344 + ++ G +V ++ + + LE+ V + I + Q +K++AFP + Sbjct: 339 QQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRY 398 Query: 345 ---TGVVTRISPQADVNSRLVPV 364 G V I+ A + RL V Sbjct: 399 GYLVGKVKNINLDAIEDQRLGLV 421
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 31.7 bits (72), Expect = 0.002 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 1 MYILI-GGMGSMGSNLAKNLLKMGHTVAAVD 30 M L+ G G +G +++K LL+ GH V +D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGID 31
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.6 bits (82), Expect = 4e-04 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 56 TGLSVSLALLGSALGAFGAGPIADRHGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRV 115 G+ ++L L A G ++DR GR ++++ + +W R+ Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRI 104 Query: 116 LGGIGVGAASVIAPAYIAEVSPAHLRGRLGSLQQLAIVSGIFIALLSNWFIALMAGGSAQ 175 + GI GA +A AYIA+++ R R G+ + M G S Sbjct: 105 VAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---MGGFSPH 160 Query: 176 NPWLFGAA 183 P+ AA Sbjct: 161 APFFAAAA 168
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 88.0 bits (218), Expect = 3e-21 Identities = 50/273 (18%), Positives = 108/273 (39%), Gaps = 6/273 (2%) Query: 189 QSGTAWEVALRFDEEGGQKFAELTQAVAGTGRSLGVFLDNDLISAPVVGVEFANTGITGG 248 + GT + G A L G + D V + G Sbjct: 50 KGGTTIRTESTTAIDVGVYRAALEPLELGDVI-ISEVRDPSFREDQHVAMIRIQMQEDGQ 108 Query: 249 AAVITGNFTIDTANDLAVQLRGGSLPFPVEVVENRTVGATLGQESIRRSLVAGFVGLVLV 308 A G + N + L + E +VG + E + ++ + V++ Sbjct: 109 GAEGQGAQGQELVNKVETALTAVDPALKITSFE--SVGPKVSGELVWTAVWSLLAATVVI 166 Query: 309 LVFMAVYYRLP-GIVADISLMIYAVLTLAAFALVGVTLTLPGIAGFILSIGMAVDANVLI 367 + ++ V + + A ++L+ +LT+ FA++ + L +A + G +++ V++ Sbjct: 167 MFYIWVRFEWQFALGAVVALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVV 226 Query: 368 FERTREELRA--GNTLYRSVEAGFFRAFSSILDSNVTTLIACAALFWFGSGLVKGFALTL 425 F+R RE L L + S + + +TTL+A + +G +++GF + Sbjct: 227 FDRLRENLIKYKTMPLRDVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAM 286 Query: 426 AIGVMVSLFTALTCSRTLLLVIVLSLPKVRQNP 458 GV ++++ ++ ++L I L K +++P Sbjct: 287 VWGVFTGTYSSVYVAKNIVLFIGLDRNKEKKDP 319 Score = 32.9 bits (75), Expect = 0.002 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 3 RLRWLLLLIVVLVIGASFVLVKLP-LQLGLDLRGGAQLTIEVQPTKEIPQI 52 R +W ++++ AS +L + L G+D +GG + E ++ Sbjct: 18 RWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVGVY 68
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 270 bits (693), Expect = 5e-92 Identities = 87/318 (27%), Positives = 164/318 (51%), Gaps = 35/318 (11%) Query: 2 KLDLFKWEKPAWIVSSLLVLISIFAMAISWAQFQAPFRPGLDFVGGTRLQLQLECASSNN 61 D F+W+ + + ++++ S+ + F G+DF GGT ++ + A Sbjct: 13 NFDFFRWQWATFGAAIVMMIASVILPLVIGLNF------GIDFKGGTTIRTESTTA---- 62 Query: 62 CPAAIDVAEVQDILGGVGLGNSSVQVIEDYTLSIRQQTLDV---------------EQRE 106 IDV + L + LG+ + + D + Q + Q + Sbjct: 63 ----IDVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQ 118 Query: 107 AVQKALNEGIGKFDP--ETIQIDTVGPTVGKALFRSGVLALVISLLGIIIYLTIRFQLDY 164 + + + DP + ++VGP V L + V +L+ + + I+ Y+ +RF+ + Sbjct: 119 ELVNKVETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQF 178 Query: 165 AVFAIIALLYDALITMGAFAIFGLVGGVEVDSLFLVALLTIIGFSVNDTVVIYDRVRETL 224 A+ A++AL++D L+T+G FA+ L + D + ALLTI G+S+NDTVV++DR+RE L Sbjct: 179 ALGAVVALVHDVLLTVGLFAVLQL----KFDLTTVAALLTITGYSINDTVVVFDRLRENL 234 Query: 225 ERHSDWDINHVVDDAVNQTLTRSINTSLTTSLPLVAIFLFGGDSLKFFALALIIGFASGV 284 ++ + V++ +VN+TL+R++ T +TT L LV + ++GGD ++ F A++ G +G Sbjct: 235 IKYKTMPLRDVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGT 294 Query: 285 YSSIFMATTLWAWWRKWR 302 YSS+++A + + R Sbjct: 295 YSSVYVAKNIVLFIGLDR 312
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.8 bits (67), Expect = 0.025 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 74 LVPTMDNETKLFASKAIAGGKNQEALQQLTQYLEKSPNDP-EAWIYLNNLR-ALDHNPLQ 131 VP ++ + + ++ +L QL YLE +P E + L LR AL P Sbjct: 93 KVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPEL 152 Query: 132 IAVVAPVGSSL 142 + V +L Sbjct: 153 AHLSHLVEQAL 163
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 31.1 bits (70), Expect = 0.011 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 1/107 (0%) Query: 527 PTPTQAEKAAAEAEINDPEGDSPEEDFTGDTELGLKAIAYPDFSQRPVSKPKETEPEHPI 586 P + +A E + E + I P +P KP + E P Sbjct: 52 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPK 111 Query: 587 PQQDPKESLASRPF-DTQPPLPPEEIPLNPPLDPPTVMAEQLNKTHR 632 P ES + PF +T P P T +A R Sbjct: 112 RDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSR 158
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 29.8 bits (67), Expect = 0.024 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 332 ALLNAIQPPSQATDWQSYVERLGLATTTVRLRDGSGLSRQDLVTPQALVQL-LINQTQKS 390 AL+ + S D L T+ L + + L+ A+ +L I TQ+ Sbjct: 255 ALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLYLTAVEELSRIFDTQRV 314 Query: 391 TGTIYQQSLAV 401 G + SL V Sbjct: 315 AGILSTASLKV 325
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 31.2 bits (71), Expect = 0.005 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Query: 227 AMIIDPWGVILADAGEKPGLAIAEI----NPDRLKQV 259 A+I+D WG++ AD G K G IA I NPD V Sbjct: 75 ALILDHWGIVKADIGLKDGR-IAAIGKAGNPDMQPGV 110
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.4 bits (66), Expect = 0.009 Identities = 5/29 (17%), Positives = 11/29 (37%) Query: 177 HHRPLLAISVTVVILSVFYWFTKQINLGL 205 ++ ++I SV +N G+ Sbjct: 19 WQWATFGAAIVMMIASVILPLVIGLNFGI 47
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 1e-21 Identities = 24/118 (20%), Positives = 54/118 (45%) Query: 4 RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63 +LV +++ + + L GYDV + + + DL++ + +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121 L R+++ +P+++++A++ + + GA DY+ KPF+ E I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.8 bits (67), Expect = 0.018 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Query: 169 IGITISFPLGMVVGGIAGYFGGWLDVVLMRLVEVLMTIPGIYLLVALAAVLPPGLSSAQR 228 IG I FP G + I GY GG +++ R + + G+ L L + Sbjct: 294 IGSVIIFP-GTMSVIIFGYIGG---ILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW 349 Query: 229 FLLIVVITSFISWSGLARVIRGQV-LSLKQQEYVQAAKAMGA 269 F+ I+++ S VI V SLKQQE A M Sbjct: 350 FMTIIIVFVLGGLSFTKTVISTIVSSSLKQQE---AGAGMSL 388
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 42.9 bits (101), Expect = 1e-06 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 20/149 (13%) Query: 13 SQTIVGKDEAIRLVL----VALLSGGHALLEDVPGVGKTLLAKSL---ARSINGKFQRVQ 65 +VG+ A++ + + + ++ G GK L+A++L + NG F + Sbjct: 136 GMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAIN 195 Query: 66 C---TPDLLPTDITG------TNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAAL 116 DL+ +++ G T S+ FE G L DEI Q L Sbjct: 196 MAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEG----GTLFLDEIGDMPMDAQTRL 251 Query: 117 LEVMEEKQVTVDGETRLVPHPFFVIATQN 145 L V+++ + T G + ++A N Sbjct: 252 LRVLQQGEYTTVGGRTPIRSDVRIVAATN 280
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 193 bits (492), Expect = 2e-61 Identities = 89/352 (25%), Positives = 149/352 (42%), Gaps = 49/352 (13%) Query: 6 ILVTGGAGFIGANFVYHCVQTCGDR--RIVVLDALT--YAGN--RATLAPLEKLPNFRFV 59 LVTG AGFIG +H + + ++V +D L Y + +A L L + P F+F Sbjct: 3 YLVTGAAGFIG----FHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQ-PGFQFH 57 Query: 60 QGDIGDRHLVDQLLREEQIETIAHFAAESHVDRSILGPGAFVQTNVVGTFTLLEAFREHW 119 + D+ DR + L E + V S+ P A+ +N+ G +LE R + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 120 QRRGNPAQFRFLHVSTDEVYGSLTPNEPGFSETTPYS-PNSPYSASKAGSDHLVRAYFHT 178 + L+ S+ VYG L P FS P S Y+A+K ++ + Y H Sbjct: 118 IQ-------HLLYASSSSVYG-LNRKMP-FSTDDSVDHPVSLYAATKKANELMAHTYSHL 168 Query: 179 YGLPTLITNCSNNYGPYQFPEKLIPLMCLNILRGEKLPVYGDGQNVRDWLYVTDHCQALD 238 YGLP YGP+ P+ + +L G+ + VY G+ RD+ Y+ D +A+ Sbjct: 169 YGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228 Query: 239 LVLHQAL------------------PGATYNIGGNNEVKNIELVEILCDLMDELAPDLPV 280 + P YNIG ++ V+ ++ ++ L D + Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG-------- 280 Query: 281 KPARQLISYVTDRPGHDRRYAIDASKIKRELGWEPKVTVERGLRQTVQWYLD 332 A+ + + +PG + D + +G+ P+ TV+ G++ V WY D Sbjct: 281 IEAK--KNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 316 bits (810), Expect = e-101 Identities = 140/675 (20%), Positives = 282/675 (41%), Gaps = 68/675 (10%) Query: 9 LRNVAIVGPYGSGKTTLLESVLWVSGSVSRKGNIKDGNTVSDSSPEAKARQMSVEVSVAG 68 + N+ ++ +GKTTL ES+L+ SG+++ G++ G T +D++ + R ++++ + Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 69 IDYENLRLNFLDCPGSIEFAQETYGALVGAGTAVIVCEADVSRVLTLAP----LFKFLDD 124 +EN ++N +D PG ++F E Y +L A+++ +S + LF L Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILL----ISAKDGVQAQTRILFHALRK 118 Query: 125 WAIPHLVFINKMDRAKQPFGEVLQALKS-VSSRPLIPQQYPIYKGEELQGYIDLITEQAY 183 IP + FINK+D+ V Q +K +S+ +I Q+ +Y + + + Sbjct: 119 MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTES------ 172 Query: 184 QYHTGSAADPIALPAELAGAEHQARQEMLEALADFDDRLLEELLEEVEPPQAEIEADFKQ 243 E + + + +D LLE+ + E+E + Sbjct: 173 --------------------------EQWDTVIEGNDDLLEKYMSGKSLEALELEQEESI 206 Query: 244 ELGADLIVPVVLGAAEQDFGVRPLLDVLIKEAPDPSVTAARRSLSTDGSGPVIAQVLKTY 303 + PV G+A+ + G+ L++V+ + + G + +V K Sbjct: 207 RFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSST---------HRGQSELCGKVFKIE 257 Query: 304 FTPQG-RLSLARIWQGTLREADSLN-----GQRLGGIYRLFGNQQTPVQTATVGEIVGLA 357 ++ + RL+ R++ G L DS+ ++ +Y + + A GEIV Sbjct: 258 YSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIV--- 314 Query: 358 RLENINTGTTLSTADVKPLP---FVEPLPPVYGLAIAPEQRKDEVKLSTALGKLVEEDPS 414 L+N D K LP +E P+ + P + + L AL ++ + DP Sbjct: 315 ILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPL 374 Query: 415 LTWEQNTETQEVILWGQGEIHLKVALERLERQYKLPMVSQQPQVPYKETIRKGTEVHGRY 474 L + ++ T E+IL G++ ++V L+ +Y + + ++P V Y E K E Sbjct: 375 LRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYMERPLKKAE--YTI 432 Query: 475 KHQTGGHGAFGDVYLTIKPLERGNGFSFSETIVGGVVPKQYIPGVEMGVREYLAKGPLGY 534 + + + + L++ PL G+G + ++ G + + + V G+R +G G+ Sbjct: 433 HIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGW 492 Query: 535 PVVDIAVTLTDGSYHNVDSSEQAFKQAARLAMTEGMPQCNPVLLEPILSVNVTTPTEFTS 594 V D + G Y++ S+ F+ A + + + + + LLEP LS + P E+ S Sbjct: 493 NVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLS 552 Query: 595 RVLQLVSGHRGQILGYEARSDWKSWDQVAAHLPQAEMQNFIIELRSLTLGVGNFTWQSDH 654 R + I+ + +++ ++ +P +Q + +L T G + Sbjct: 553 RAYTDAPKYCANIVDTQLKNNEV---ILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKG 609 Query: 655 LQE-VPDKFAPNLRP 668 + RP Sbjct: 610 YHVTTGEPVCQPRRP 624
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 45.2 bits (107), Expect = 1e-07 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 11/140 (7%) Query: 8 ILLIEDDSATAAMVDHCFGPSIVSPLVERLPVQITTVSNLAEAVDICQDREFAVVLLDLF 67 IL+ +DD+A +++ + R + SN A + +V+ D+ Sbjct: 6 ILVADDDAAIRTVLNQ---------ALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVV 56 Query: 68 LSELQGIDTLIKARTIFPDQSIIVYSQSEDEHLVIQAFQHGADGYLR--LKNLDSYLLYY 125 + + D L + + PD ++V S I+A + GA YL + + Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 126 ELLSVLERNIYRRKSENQRN 145 L+ +R + + ++Q Sbjct: 117 RALAEPKRRPSKLEDDSQDG 136
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 33.6 bits (77), Expect = 4e-04 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 13/64 (20%) Query: 8 GIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSP-----ERMAMIE 62 IY G F P GHL + +QV + A RNP + P ER+ I Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRLFDQVYV--------AVLRNPNKQPMFSVQERLEQIA 54 Query: 63 ACLS 66 ++ Sbjct: 55 KAIA 58
>PF06580#Sensor histidine kinase Length = 349 Score = 32.1 bits (73), Expect = 0.004 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 32/110 (29%) Query: 344 LVSNLIANAIQYTTAGGRVDITLTSHEQMAIITVQDTGIGIAPDQQEHIFERFYRVNRDR 403 LV N I + I GG++ + T + V++TG + +E Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 404 SRKTGGTGLGLAIAQVITVKHR--------GSLTVESALGKGSLFTIQLP 445 TG GL V+ R + + GK + + +P Sbjct: 310 -----STGTGLQ-----NVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 92.2 bits (229), Expect = 1e-23 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 2 RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61 IL+ +D+ + + + L Y V ++ + W ++ L + D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGD--GDLVVTDVVMPDENA 62 Query: 62 LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARL-RALQRR 120 +L +++ LPVL+++A ++ + GA DYL KPF + EL+ + RAL Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 121 SPQFQPQ 127 + Sbjct: 123 KRRPSKL 129
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 836 bits (2160), Expect = 0.0 Identities = 237/1046 (22%), Positives = 455/1046 (43%), Gaps = 53/1046 (5%) Query: 13 SIAQRWFIVIAAIGITLWGIISVGQMPLDVFPEFAPPQVDIHTEAPGLAPEEVETQITVP 72 I + F + AI + + G +++ Q+P+ +P APP V + PG + V+ +T Sbjct: 5 FIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQV 64 Query: 73 IESAVNGLPGVTTVRSSS-KVGLSMVSVVFDQDADVYKARQTVTERLQQVTNQLPEGSHP 131 IE +NG+ + + S+S G +++ F D A+ V +LQ T LP+ Sbjct: 65 IEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQ 124 Query: 132 PEISPLVSPLGTIVQYAFTIKDGGSSNLMDLRRLLETTVGNQLLSVPGVSQVTLYGGDER 191 IS S ++ F + D + D+ + + V + L + GV V L+G + Sbjct: 125 QGISVEKSSSSYLMVAGF-VSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QY 182 Query: 192 QEQVLVDPAKLRALKVSLNEVTQASAEANSNAPGGFLIGG----GQEL--LVRGLGQMQS 245 ++ +D L K++ +V N G L G GQ+L + + ++ Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 246 IEDLRRSVVKVV-DGKPILLEDVAEVKTGSALKRGDGSFNGQPAIVMMVNKQPDVDTPTV 304 E+ + ++V DG + L+DVA V+ G NG+PA + + + Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 305 TKAVEAVVESLKPTFPADVQIAQTFRQANFIDSAIRNVSTSLLEGIVIVSVIMLIFLMNW 364 KA++A + L+P FP +++ + F+ +I V +L E I++V ++M +FL N Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 365 RTAAITLTAIPLSLLIGLMFMKAWGLGINTMTLGGLVVAIGSVVDDSIVDMENCYRGLRT 424 R I A+P+ LL + A+G INT+T+ G+V+AIG +VDD+IV +EN R + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 425 NQAEGNPKHPLRVVYETSVEVRLAVIFSTVIIVVVFAPIFSLTGVEGRIFAPMGLAYLLC 484 ++ P ++ +++ A++ +++ VF P+ G G I+ + + Sbjct: 423 DKLP-----PKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSA 477 Query: 485 IGASTLVAMTVSPALCGILL---ANQRLPQEGTFVSRWAERLYRPLLNFSLRAPQVILS- 540 + S LVA+ ++PALC LL + + +G F W + +N + IL Sbjct: 478 MALSVLVALILTPALCATLLKPVSAEHHENKGGFF-GWFNTTFDHSVNHYTNSVGKILGS 536 Query: 541 ------IALIAVIASVSLVPSLGRVFLPEFREKSMVNSMVLFPGVSLDMTNRAGMA---- 590 I + V V L L FLPE + + + L G + + T + Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 591 LFNNLKDNPLYEWVQIRAGRAPGDADGAGVSMAHVDVELSDEALKDREASVKELRKAFNQ 650 N K N + + G A AG MA V ++ +E D ++ + +A + Sbjct: 597 YLKNEKAN-VESVFTVNGFSFSGQAQNAG--MAFVSLKPWEERNGDENSAEAVIHRAKME 653 Query: 651 LPGVASNMGGFISHRMDEVLSGVRSAIAVKIFGPDLKELRAIG-EQVQEAMKTVPGIVDL 709 L + G I M ++ + F +L + +G + + +A + G+ Sbjct: 654 LGKIRD--GFVIPFNMPAIVELGTAT----GFDFELIDQAGLGHDALTQARNQLLGMAAQ 707 Query: 710 QLEPQLPIR--------QVQIHYDRAAAAQYGLRMADISAVVETALNGRIVSQVPEDQQL 761 + +R Q ++ D+ A G+ ++DI+ + TAL G V+ + ++ Sbjct: 708 HPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRV 767 Query: 762 VNVVVMLPETERNSLDAMGAIPISTPTGQMITLGDVAKIDYGMGANVVNREDVSRLIVVS 821 + V R + + + + + G+M+ + G+ + R + + + Sbjct: 768 KKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQ 827 Query: 822 ANVAERDLGSVVEDVQAQIKE-KVQLPQGYFIEYGGQFESEQRATNSLLLFSFVAALVIG 880 A G+ D A ++ +LP G ++ G E+ + N ++ +V+ Sbjct: 828 GEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 881 ILMFFSVKSLPATIAIMINLPLALIGGLLSVVFTGGVISIASLVGFITLFGVAVRNGLLL 940 + + +S +++M+ +PL ++G LL+ + +VG +T G++ +N +L+ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 941 VDNYNQ-KFAQGMKLKETIFKGSMERVNAILMTALTSALGMLPLATASSAGNEILQPLAI 999 V+ +G + E R+ ILMT+L LG+LPLA ++ AG+ + I Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 1000 VVLGGLCTSTALTLLVLPALYAKFGK 1025 V+GG+ ++T L + +P + + Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVVIRR 1030