>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 39.3 bits (91), Expect = 5e-05 Identities = 48/299 (16%), Positives = 98/299 (32%), Gaps = 36/299 (12%) Query: 208 KALVITRQTGTYVVSLAATTNDPEKS------ARLANQVVTSFTEEENSASNGLYENTSS 261 K +V TG + + +A T +P + A A + + + N+ G ++ Sbjct: 913 KVVVTKSATGNFTLQVADKTGEPNHNELTLFDASKAQRDHLNVSLVGNTVDLGAWKYKLR 972 Query: 262 TLDGRL------ADLRQKVLGAEQAVETFRADNDMAATDGNLISDQRLASLNTLLVTAQE 315 ++GR + R + + D+ + N +++ + Sbjct: 973 NVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSN--NEEIARVDEAPVPPPAP 1030 Query: 316 KTIQAKARADAVANLRVEDIVAGNQAEGGVTSPLVSLRQQYAAQAAAVGSLESQMGTRHP 375 T A + + V N+ + T+ + + A+ A Sbjct: 1031 ATPSETTETVAENSKQESKTVEKNEQDATETTA----QNREVAKEAK------------S 1074 Query: 376 RLQAARSSLQSIAGEIKGELQRLATSAKGEYEQAKAAEDSIAKELAVQKA--LQATVSDK 433 ++A + + + E + T+ E + E + + Q+ + + VS K Sbjct: 1075 NVKANTQTNE--VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPK 1132 Query: 434 QVELNELQRKATAARDIYETVL--KRSSQTNEEQNLSQSNIRVISPAEPPVKADGPGKK 490 Q + +Q +A AR+ TV + SQTN + Q S E PV Sbjct: 1133 QEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT 1191
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 26.0 bits (57), Expect = 0.023 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 34 DSLGEVALI-PGTGGNFEIRVNGDLIWERKRDGGFPGP 70 ++ L+ P +FEI V+ + + + P Sbjct: 144 KNVLGAVLLSPSQSSDFEIHVSEMVTSDNQSARYLTLP 181
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 148 bits (376), Expect = 4e-40 Identities = 93/452 (20%), Positives = 170/452 (37%), Gaps = 81/452 (17%) Query: 15 IRNFSIVAHIDHGKSTLADRLIQTTGG---LAEREMSEQVLDNMEIERERGITIKAQTVR 71 I N ++AH+D GK+TL + L+ +G L + DN +ER+RGITI+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 72 LHYQANNGEKYVLNLIDTPGHVDFAYEVSRSL----------SACEG----SLLVVDASQ 117 + K +N+IDTPGH+DF EV RSL SA +G + ++ A + Sbjct: 63 FQW---ENTK--VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 118 GVEAQTLA-------------NVYQAIDNN-------------HELVTVLNKIDLPAAE- 150 + T+ VYQ I + + V N + + Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDT 177 Query: 151 ---------------PDRIKEQIEEVIGIDASEAVLI-----SAKTGLGIPDVLEAIVHK 190 ++E+ I L SAK +GI +++E I +K Sbjct: 178 VIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNK 237 Query: 191 LPAPKSAGGEKAPLKALLVDSWYDTYLGVMVLVRIIDGVLTKGQTIRMMGTDAKYQVERV 250 + G + L + Y + +R+ GVL ++R+ + E Sbjct: 238 FYSSTHRGQ--SELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMY 295 Query: 251 GVLTPKMVNVDSLGPGEIGFITASIKEVADTRVGDTITEDKRPTAEALPGFKPAQPVVFC 310 + ++ +D GEI + ++ +GDT +R E P++ Sbjct: 296 TSINGELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQRERIEN------PLPLLQT 348 Query: 311 GLFPVDAADFEDLRAAMGKLRLNDASFSFEMESSAALGFGFRCGFLGLLHLEIIQERLER 370 + P E L A+ ++ +D + ++S+ FLG + +E+ L+ Sbjct: 349 TVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATH---EIILSFLGKVQMEVTCALLQE 405 Query: 371 EFDLDLIATAPSVVYQLTMTDGSERELHNPAD 402 ++ +++ P+V+Y +E +H Sbjct: 406 KYHVEIEIKEPTVIYMERPLKKAEYTIHIEVP 437 Score = 41.8 bits (98), Expect = 8e-06 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 12/119 (10%) Query: 385 YQLTMTDGSERE-LHNPADM----PDVVKIA------EIREPWIKATIMTPDDYLGGILK 433 ++ G + PAD P V++ E+ EP++ I P +YL Sbjct: 497 CKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYT 556 Query: 434 LCQDRRGIQTELTYVGTRAMVTYELPLNEVVFDFYDRLKSISKGYASFDYHLEGYRAGN 492 + +++ E+P + ++ L + G + L+GY Sbjct: 557 DAPKYCANIVDTQLKNNEVILSGEIPARC-IQEYRSDLTFFTNGRSVCLTELKGYHVTT 614
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.7 bits (82), Expect = 4e-05 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 15/124 (12%) Query: 35 FMQPYGPEDAERYWLDVVDAVAGGGSLLLVAELDGRIVGTVQVGAAQMPNQPHRGDLKKL 94 + + Y +D V V G + L+ +G +++ + N ++ + Sbjct: 46 YFKQYEDDD------MDVSYVEEEGKAAFLYYLENNCIGRIKIRS----NWNGYALIEDI 95 Query: 95 LVHRSARGRGLARLLMEAAEREAAARGKTLLVLDTATGSNAEAI--YPRLGWQRVGVIPD 152 V + R +G+ L+ A A L+L+T N A Y + + V D Sbjct: 96 AVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLET-QDINISACHFYAKHHFIIGAV--D 152 Query: 153 YALW 156 L+ Sbjct: 153 TMLY 156
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 45.5 bits (108), Expect = 1e-07 Identities = 63/297 (21%), Positives = 105/297 (35%), Gaps = 79/297 (26%) Query: 9 LVTVFGGSGFVGRHVVRALAKRGYRIR----------VAVRRPDLAGFLQPLGNVGQISF 58 LVT G +GF+G HV + L + G+++ V++++ L+ L G F Sbjct: 4 LVT--GAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQ----ARLELLAQPG-FQF 56 Query: 59 VQANLRYRNSIDR--AAEGASHVVNCVGILHETG-----RN--TFDAVQEFGARAVAEAA 109 + +L R + A+ V H N + G + E Sbjct: 57 HKIDLADREGMTDLFASGHFERVFI---SPHRLAVRYSLENPHAYADSNLTGFLNILEGC 113 Query: 110 RNAGATLTHI------SAIGAN------TDSDSD-----YGRTKGRAE------AAILSI 146 R+ + H+ S G N TD D Y TK E + + + Sbjct: 114 RHNK--IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171 Query: 147 KPDAVIFRPSIVFGP---EDSFFNKFADMARMSPVLPLVGGGKTKFQPVYVEDVAEAVAR 203 A R V+GP D KF + + GK K Y++D+AEA+ R Sbjct: 172 --PATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 204 AVDG-----------------KVAGGKIYELGGP---EVLSFRECLEMMLKVTSRKN 240 D +A ++Y +G E++ + + LE L + ++KN Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 7e-05 Identities = 45/211 (21%), Positives = 72/211 (34%), Gaps = 21/211 (9%) Query: 139 AESGAEAAWAGAEVNILAPRSLIALANHFRGTQVLSRPEASIRANAANLPDLAEIKGQES 198 + +A+ GA + P L L + L+ P+ + D + G+ + Sbjct: 87 FMTAIKASEKGAYDYLPKPFDLTELIGIIG--RALAEPKRRPSKLEDDSQDGMPLVGRSA 144 Query: 199 A----KRALEVAAAGGHNLLMVGPPGSGKSMLAARLPSILPPLSAAELLEVSMVHSIAGE 254 A R L L++ G G+GK L AR + ++M I + Sbjct: 145 AMQEIYRVLARLMQTDLTLMITGESGTGKE-LVARALHDYGKRRNGPFVAINMAA-IPRD 202 Query: 255 LSGGKLSDRRPFRTPHHSATMAALVGGGIRARPGEASLAHHGVLFLDEFPEFTPQALDAL 314 L +L F + T G G A G LFLDE + A L Sbjct: 203 LIESEL-----FGHEKGAFT------GAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRL 251 Query: 315 RQPLEGGECVIARANHRVSYPAKFQLIAAMN 345 + L+ GE R + +++AA N Sbjct: 252 LRVLQQGE--YTTVGGRTPIRSDVRIVAATN 280
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 30.4 bits (68), Expect = 0.009 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 160 NPEIHRKTTAEEIWNDTNGTVDIVVSGIGTGGTITGVGQVLKSHKPEIQIIAVEP 214 N ++ R + E NG ++ + G G+G +L + I A+ Sbjct: 215 NAKLDRWGNSME---FINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRN 266
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 233 bits (595), Expect = 4e-71 Identities = 115/447 (25%), Positives = 204/447 (45%), Gaps = 37/447 (8%) Query: 11 RRRTFAIIAHPDAGKTTLTEKLLLFGGAIQLAGEVKAKKDRMQTRSDWMKIERERGISVV 70 + ++AH DAGKTTLTE LL GAI G V D+ TR+D +ER+RGI++ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSV----DKGTTRTDNTLLERQRGITIQ 57 Query: 71 TSVMTFEYNDNVFNILDTPGHEDFADDTYRTLTAVDAAVMVIDAAKGIEPRTLKLFEVCR 130 T + +F++ + NI+DTPGH DF + YR+L+ +D A+++I A G++ +T LF R Sbjct: 58 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR 117 Query: 131 MRDIPIITFINKMDRESRDPFEILDEVEEKLALDTAPITWPIGRSKTFCGSYHLANSTAR 190 IP I FINK+D+ D + +++EKL+ + K Y T Sbjct: 118 KMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVI--------KQKVELYPNMCVTNF 169 Query: 191 GSDTEVETTPVNGPQAVADRLPENERQAFIDETELAIEACRPFDRDSFLEGHMTPVFFGS 250 + +T + G + ++ + ++ EL E + F + PV+ GS Sbjct: 170 TESEQWDTV-IEGNDDLLEKYMSGKS---LEALELEQE-----ESIRFHNCSLFPVYHGS 220 Query: 251 ALRNFGVRDLINALGEFAPPPRDQVADTRTVHATDDKMTAFVFKIQANMDPNHRDRIAFA 310 A N G+ +LI + H ++ VFKI+ R R+A+ Sbjct: 221 AKNNIGIDNLIEVITNKFYSS---------THRGQSELCGKVFKIE--YSE-KRQRLAYI 268 Query: 311 RICSGKLERGMKARLARTGKQLGLTAPQFFFASQRQLADTAYAGDVVGIPNHGTLRIGDT 370 R+ SG L R++ K + +T + D AY+G++V + N L++ Sbjct: 269 RLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEF-LKLNSV 326 Query: 371 LTEGESLVFQGVPNFSPEILR-RVRLEDAMKAKKLKEALQQMAEEG-VVQLFSPEDGSPA 428 L + + L + +L+ V + + L +AL ++++ +++ + Sbjct: 327 LGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEI 386 Query: 429 IVGVVGALQLDVLKERLMAEYGLPVSF 455 I+ +G +Q++V L +Y + + Sbjct: 387 ILSFLGKVQMEVTCALLQEKYHVEIEI 413
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 278 bits (712), Expect = 2e-91 Identities = 88/408 (21%), Positives = 163/408 (39%), Gaps = 3/408 (0%) Query: 2 AGGWATLAPLDSAAVAPGLVKVAGDRKLIQHLEGGIIAGLTAANGDIVKAGKVLLQLDDT 61 A + L ++ A A G + +G K I+ +E I+ + G+ V+ G VLL+L Sbjct: 71 AFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTAL 130 Query: 62 QARARLDLVQNRIATREALAARLRAERDGKAEIEFDPALLANPTKSARDA---VAAQRDV 118 A A Q+ + R + + L + + V + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 119 FSAKHHNLKDEREILSQRRRQTEEEITGLQELIVTEDKQIEVFEGETRDLESLVKRGLVT 178 + ++++ + E + I + V + D SL+ + + Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 179 RERWLLLRRQQREVEGERATNVAAIARARSAMAEIDMQIVNLNTLQLNQAVEELSKVEAE 238 + L + E E + + + S + + + L N+ +++L + Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 239 LFDLRQEERSAKDVLARTNVVAPVDGIIMDLKVHTTGGVVKPGETLMTIVPMGQQLVIEA 298 + L E ++ + + APV + LKVHT GGVV ETLM IVP L + A Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTA 370 Query: 299 MVRPEDVETIASGQPARVSFPAFARYNLPPLDGVVEIVSADRMVEERSGAPFFAATVVID 358 +V+ +D+ I GQ A + AF L G V+ ++ D + ++R G F + + Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEE 430 Query: 359 QSELAKLEGRKLLPGMSSETMIRTGARTVLSYLAEPITQNFRRAMREK 406 + L GM+ I+TG R+V+SYL P+ ++ ++RE+ Sbjct: 431 NCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.4 bits (92), Expect = 2e-05 Identities = 77/346 (22%), Positives = 127/346 (36%), Gaps = 39/346 (11%) Query: 66 LPEIRSELGLSALGAS---LLTTLPVVCLGVFSPLAPRLAQRIGTERTLLGVLLLLALGT 122 LP + +L S + +L L + +P+ L+ R G LL L A+ Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 123 AFRGLSS-LPLLFIGTALAGACIAVGNVLLPGLVKRDFPTRAALMTGFYTMALCAGAASA 181 A + L +L+IG +AG A G V G D F M+ C G Sbjct: 88 AIMATAPFLWVLYIGRIVAGITGATGAV--AGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 182 AGLTLPIEHALGGSLGG--------ALAAWALPALAVGLIWLPQVLRSGAGARRN----- 228 AG LGG +GG A AA G LP+ S G RR Sbjct: 146 AG------PVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPE---SHKGERRPLRREA 196 Query: 229 -----GFRVDGLWRDRLAWQVTLFMGLQSALAYCVFGWLVPILRERGLDGVTAG-AIVSL 282 FR +A + +F +Q W++ D T G ++ + Sbjct: 197 LNPLASFRWARGMTV-VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAF 255 Query: 283 SVMVQAASCLVVPHIAVRGRDQRLINAGLCGVAVMALLGLLFAPLSSVWL-WAVLQGIGQ 341 ++ A ++ +A R ++R + G+ + L FA + W+ + ++ + Sbjct: 256 GILHSLAQAMITGPVAARLGERRALMLGM-IADGTGYILLAFA--TRGWMAFPIMVLLAS 312 Query: 342 GGLIAAAMTTIVLRSRDPDVAAHLSGMAQCVGYLLAAIGPLIVGLI 387 GG+ A+ ++ R D + L G + L + +GPL+ I Sbjct: 313 GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (250), Expect = 1e-27 Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 10/253 (3%) Query: 7 KVAIVTGASSGIGRVTAKLFAAEGAKVVVGARRERELDSLVAEIKAEGGEAVAVAGDVRS 66 K+A +TGA+ GIG A+ A++GA + +L+ +V+ +KAE A A DVR Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 67 EDYHKALVAAALTHYGKLDIAFNNAGIIGEAGPSTGVSEAGFSEALAVNLTASFLAAKHQ 126 + A G +DI N AG++ G +S+ + +VN T F A++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 127 IGAMAENGGGSVIFTSTFVGYSFAFPGVAAYAASKSGLIGLTQALAAEFGQQGVRVNAVL 186 M + GS++ + +AAYA+SK+ + T+ L E + +R N V Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGV-PRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 187 PGAVDTDMYRDMNDTADKQAAITNMHA--------LKRVATPEEVARSVLYLASDDASFV 238 PG+ +TDM + + + LK++A P ++A +VL+L S A + Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 239 TGTASLVDGGISI 251 T VDGG ++ Sbjct: 247 TMHNLCVDGGATL 259
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.6 bits (121), Expect = 5e-09 Identities = 86/357 (24%), Positives = 138/357 (38%), Gaps = 28/357 (7%) Query: 47 VQPLLPIFSQEFSVSPAESSLSLSLSTGFLALAIVCA---AAVSEGLGRRSLMSISLVGA 103 + P+LP ++ S ++ L + + CA A+S+ GRR ++ +SL GA Sbjct: 24 IMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGA 83 Query: 104 ALLTVATAFAPNWHLLLVIRAVEGLVLGGVPAVAMAYLAEEIDPRGLGAAMGLYVGGTAF 163 A+ A AP +L + R V G+ G AVA AY+A+ D G F Sbjct: 84 AVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 164 GGMSGRVLTGIFAEYLGWRPALFLIGAIGLVAALGFIALLPPSRNFVRRP----GFDPRF 219 G ++G VL G+ + F A+ + L LLP S RRP +P Sbjct: 143 GMVAGPVLGGLMGGF-SPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLA 201 Query: 220 HVRAWLGHLANPALPFIFAIAFLAMGSFVTIYNYAGFRLVAPPYGLNQTELGLIFTVY-- 277 R G AL +F I L ++ G + + T +G+ + Sbjct: 202 SFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG----EDRFHWDATTIGISLAAFGI 257 Query: 278 LFGIGAASIGGLIGDRIGHFRVLLFGLALTAAGSMLTLSAALPSIILGIIVLTAGFFMSH 337 L + A I G + R+G R L+ G+ G +L A + I+VL A + Sbjct: 258 LHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM 317 Query: 338 SIASGLVGRLAHGTK-----GHASSLYMLAYYVG--------SSLMGSAGGWFWAIG 381 ++ R + G ++L L VG ++ + + GW W G Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAG 374
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 30.4 bits (68), Expect = 0.018 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 15/82 (18%) Query: 55 AARNWAAHRGIVKALTEMDEGQTLLIQSGKPIGLVKTHARAPLVI-MANCNIVGQWA-KA 112 A ++WA+ G T L QS +P V ++ P+ I + +I + KA Sbjct: 284 ANQSWASQNG--------GSTTTSLSQSVRPT--VPARSKIPVKIELYKADISYPYEFKA 333 Query: 113 EVFYELQRKGLICWGGLTAGAW 134 +V Y+L G + WGG AW Sbjct: 334 DVSYDLTLSGFLRWGG---NAW 352
>SOPEPROTEIN#Salmonella type III secretion SopE effector protein signature. Length = 239 Score = 28.2 bits (62), Expect = 0.014 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Query: 105 LTRSNAIDVVYWPTMDPTVVSGTREQILDS-YREVRDHLAVLIESR------LLKRNGIA 157 L N ID+ + DP S TRE IL + Y + +D L+ S+ L+ G A Sbjct: 87 LQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEA 146 Query: 158 AQSA 161 A++A Sbjct: 147 AKNA 150
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 32.6 bits (74), Expect = 3e-04 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 7/61 (11%) Query: 5 SAAMKIAGSGLEAQSTRLRIVSENIANARSTGDTPGADPYRRKTITFGQQMDRTSGVETV 64 S+ + A SGL A L S NI++ G Y R+T Q V Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAG-------YTRQTTIMAQANSTLGAGGWV 53 Query: 65 N 65 Sbjct: 54 G 54 Score = 28.0 bits (62), Expect = 0.014 Identities = 8/45 (17%), Positives = 20/45 (44%) Query: 90 KGVVKLPNVNILVEMADMREANRSYDANLQTIRQTRDLISSTIDL 134 + VN+ E +++ + Y AN Q ++ + + I++ Sbjct: 501 NQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 25.0 bits (54), Expect = 0.047 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 41 NGLSFASVLGGMASDAVNSLKGAESMSFAGIKGTATT--REVVDSMLQAEQTLQTAIAIR 98 +SFA L ++ A + + G +V+ M +A ++Q I +R Sbjct: 29 PTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVR 88 Query: 99 DKVVSAFLEVTKMQM 113 +K+V+A+ EV MQ+ Sbjct: 89 NKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 39.9 bits (93), Expect = 6e-06 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 15/78 (19%) Query: 4 LAIAATGMDAQQTNLEVIANNIANINTTGFKRARAEFTDLLYQTERAKGVANRANQAVVP 63 + A +G++A Q L +NNI++ N G+ R T + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT---TIMAQANSTLGA----------- 49 Query: 64 EGANIGLGVQTSAVRNLH 81 G +G GV S V+ + Sbjct: 50 -GGWVGNGVYVSGVQREY 66 Score = 36.9 bits (85), Expect = 6e-05 Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 219 LESSNVDPVKEITELISAQRAYEMNSKVITTADEM 253 S V+ +E L Q+ Y N++V+ TA+ + Sbjct: 504 QSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAI 538
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 477 bits (1228), Expect = e-171 Identities = 298/373 (79%), Positives = 333/373 (89%) Query: 1 MKLFFRIVTLVAVVAMSLADMAPAWALTSRIKDIASLQAGRDNQLIGYGLIVGLQGTGDG 60 M++ I + A+ PA A TSRIKDIASLQAGRDNQLIGYGL+VGLQGTGD Sbjct: 1 MRVLRIIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDS 60 Query: 61 FRSSPFTEQSMRAMLQNLGISTQGGQSNAKNTAAVMVTANLPPFASPGSRLDVTVSSLGD 120 RSSPFTEQSMRAMLQNLGI+TQGGQSNAKN AAVMVTANLPPFASPGSR+DVTVSSLGD Sbjct: 61 LRSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGD 120 Query: 121 ATSLRGGTLVMTSLSGADGQIYAVAQGSVIVSGFQAQGQAATVTEGVTTAGRVPGGAIIE 180 ATSLRGG L+MTSLSGADGQIYAVAQG++IV+GF AQG AAT+T+GVTT+ RVP GAIIE Sbjct: 121 ATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIE 180 Query: 181 RELPSHFKDSVNLVLQLRNPDFSTAIRIADIVNGYASARFGGPVAEAKDSQEVVIQKPRT 240 RELPS FKDSVNLVLQLRNPDFSTA+R+AD+VN +A AR+G P+AE +DSQE+ +QKPR Sbjct: 181 RELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV 240 Query: 241 ADLTRLMADVENLIVETDTPAKVVINERTGTIVIGSDVRVSPVAVSYGTLTVQVTETPQI 300 ADLTRLMA++ENL VETDTPAKVVINERTGTIVIG+DVR+S VAVSYGTLTVQVTE+PQ+ Sbjct: 241 ADLTRLMAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQV 300 Query: 301 IQPEPFSRGRTAVQPQTDIAAEQTGGRVAIIDGPDLRTLVAGLNNIGVKPDGIIAILQGI 360 IQP PFSRG+TAVQPQTDI A Q G +VAI++GPDLRTLVAGLN+IG+K DGIIAILQGI Sbjct: 301 IQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVEGPDLRTLVAGLNSIGLKADGIIAILQGI 360 Query: 361 KSAGALQAELVLQ 373 KSAGALQAELVLQ Sbjct: 361 KSAGALQAELVLQ 373
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 235 bits (601), Expect = 1e-80 Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 30/244 (12%) Query: 5 FPAAIAALALLAGC---------QSPTAVSEIGRAPAMSPIGSGLAYGQTPQMALYPKQP 55 + + + L GC Q T+ + P +P+ +G + Q+ Q Y QP Sbjct: 9 YAISSLLVLSLTGCAWIPSTPLVQGATSAQPV---PGPTPVANGSIF-QSAQPINYGYQP 64 Query: 56 RAVAQGYSLWSDSQAALFKDARALNVGDILTVDIQINDKASFDNETNRSRKNSSGMNWDV 115 LF+D R N+GD LT+ +Q N AS + N SR + +D Sbjct: 65 ----------------LFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDT 108 Query: 116 NAQIF-GWTPESKTDLTYGSDTSTDGKGKIERTDKLTLLVAAVVTGILENGNLVISGSQE 174 + G ++ D+ + +GKG ++ + + V +L NGNL + G ++ Sbjct: 109 VPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQ 168 Query: 175 VRLNQELRILNVAGIVRPQDVNAENQISYDKIAEARISYGGRGRLMEVQQPPRGQQAVDL 234 + +NQ + +G+V P+ ++ N + ++A+ARI Y G G + E Q Q+ Sbjct: 169 IAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLN 228 Query: 235 FSPL 238 SP+ Sbjct: 229 LSPM 232
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 277 bits (711), Expect = 6e-97 Identities = 101/246 (41%), Positives = 159/246 (64%), Gaps = 5/246 (2%) Query: 1 MIRFIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWI--IRTFGLLTVLSVAPGILI 58 M R + ++ + QLP + + P+ G +W ++T +T L+ P IL+ Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPG-ITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 59 MVTSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLAN 118 M+TSF R +I F +LR+ +G S P N +LL L+LF+TF++MSP D+ + + QP Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 119 QINETEAVQRIAEPFRTFMAANTRDKDLALFVDLARERGQNIQTTDPIDYRVLIPAFMIS 178 +I+ EA+++ A+P R FM TR+ DL LF LA +Q + + R+L+PA++ S Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANT--GPLQGPEAVPMRILLPAYVTS 177 Query: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 E++ F+IGF + +PFL+IDL++A++ MA+GMMM+PP +I+LPFK++ FVL+DGW LLVG Sbjct: 178 ELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVG 237 Query: 239 SLVRSF 244 SL +SF Sbjct: 238 SLAQSF 243
>FLAGELLIN#Flagellin signature. Length = 507 Score = 91.6 bits (227), Expect = 8e-23 Identities = 51/234 (21%), Positives = 81/234 (34%), Gaps = 5/234 (2%) Query: 4 INTNSSAQAALQTLRNVNQGLNKTQNHVSSGYRVEKASDNAAYWSIATTMRSDNKALSAV 63 INTNS + L L+ +SSG R+ A D+AA +IA S+ K L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 SDALGVGAAKVDTAYTAMD---SAIDVVGEIKAKLVAATENGVDKAKVQEEIGQLQQQLL 120 S G + T A++ + + V E+ + T + D +Q+EI Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SIAQSASFNGENWVAGANGTKSVVSSFVRDGSNAVSITTTDYVLNSGSAGNVLFGMSNGS 180 ++ FNG ++ N K V + DG V + G G + G + Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGA--NDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 181 VETSTGILGTSTGATGSIYSMNITNFTAGQIQSALTNVESALKSMTSAGAALGS 234 V TG N + AA G Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQ 235 Score = 85.5 bits (211), Expect = 9e-21 Identities = 48/306 (15%), Positives = 98/306 (32%), Gaps = 6/306 (1%) Query: 2 TSINTNSSAQAALQTLRNVNQGLNKTQNHVSSGYRVEKASDNAAYWSIATTMRSDNKALS 61 + A+ T +K + ++G ++N + T +S Sbjct: 202 ANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAE 261 Query: 62 AVSDALGVGAAKVDTAYTAMDSAIDVVGEIKAKLVAATENGVDKAKVQEEIGQLQQQLLS 121 A + A + K + + + ++ KV + + + Sbjct: 262 AKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAAN 321 Query: 122 IAQSASFNGENWVAGANG------TKSVVSSFVRDGSNAVSITTTDYVLNSGSAGNVLFG 175 + + + +N K+ S A + + + A Sbjct: 322 VDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANA 381 Query: 176 MSNGSVETSTGILGTSTGATGSIYSMNITNFTAGQIQSALTNVESALKSMTSAGAALGSL 235 + + T + S + L +++SAL + + ++LG++ Sbjct: 382 AGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAI 441 Query: 236 SSRIDSQEDFVSALSDSIDSGIGRLVDADMEEESSKLSALQTQQQLAIQSLSIANSSSQN 295 +R DS + +++S R+ DAD E S +S Q QQ L+ AN QN Sbjct: 442 QNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQN 501 Query: 296 ILSLFR 301 +LSL R Sbjct: 502 VLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 95.5 bits (237), Expect = 4e-24 Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 5/237 (2%) Query: 4 INTNNAAMAALQTLRGINQGLQTTQSHVSSGYRVGKAADNAAYWSIATTMRSDNKALSAV 63 INTN+ ++ L L + +SSG R+ A D+AA +IA S+ K L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 SDALGLGAAKVDTAYSAMD---SAIDVVGDIKAKLVAATENGVDKAKVQEEISQLQQQLL 120 S G + T A++ + + V ++ + T + D +Q+EI Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SIAQSASFSGENWVAGADGTKNVVASFVRDGSNAVSVVMTDYVLDDGSAGNVLFGMSNGA 180 ++ F+G ++ + K V + DG + V G G + G Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGA--NDGETITIDLQKIDVKSLGLDGFNVNGPKEAT 181 Query: 181 VETSTGILGTSNGATGSVYAMDITNFTLGQIQTALTNVESALKSMTSAGAALGSISK 237 V G + + + AA G ++ Sbjct: 182 VGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTT 238 Score = 84.7 bits (209), Expect = 2e-20 Identities = 48/292 (16%), Positives = 84/292 (28%), Gaps = 16/292 (5%) Query: 26 TTQSHVSSGYRVGKAADNAAYWSIATTMRSDNKALSAVSDALGLGAAKVDTAYSAMDSAI 85 T + + +V A N + + G AK Sbjct: 216 TDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEG 275 Query: 86 DVVGDIKAKLVAATENGVDKAKVQEEISQLQQQLLSIAQSASFSGENWVAGADGTKNVVA 145 D T+ G D ++ L++A + + A +KNV Sbjct: 276 DTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYT 335 Query: 146 SFVRDGSNAVSVVMTDYV----------------LDDGSAGNVLFGMSNGAVETSTGILG 189 S V + + A + + Sbjct: 336 SVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFI 395 Query: 190 TSNGATGSVYAMDITNFTLGQIQTALTNVESALKSMTSAGAALGSISKRIELQENFVSAL 249 + S + L +++SAL + + ++LG+I R + + Sbjct: 396 DKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNT 455 Query: 250 SDSIDSGIGRLVDADMEEESSKLSALQTQQQLAVQSLSIANSSSQTILSLFR 301 +++S R+ DAD E S +S Q QQ L+ AN Q +LSL R Sbjct: 456 VTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 97.8 bits (243), Expect = 5e-25 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 10/206 (4%) Query: 4 ILTNVAAMAALQTLRGINDSLEGTQNRVSSGYRVEKASDNAAYWSIATTMRSDNKALSAV 63 I TN ++ L SL R+SSG R+ A D+AA +IA S+ K L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 SDALGLGAAKVDTAYSAMD---SAIDVISEIKAKIVAATEKGVDKTKVQEEIGQLQQQLL 120 S G + T A++ + + + E+ + T D +Q+EI Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SIAQSASFSGENWVAGADGTKSVVSTFVRDGNGNVSVKTTDYVLDTSSTGNVLFGMTSTG 180 ++ F+G ++ + K V N T + L G G Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGA-------NDGETITIDLQKIDVKSLGLDGFNVNG 176 Query: 181 TIETTSGIIGTSYGTIGSIYSMDIST 206 E T G + +S+ + + + Sbjct: 177 PKEATVGDLKSSFKNVTGYDTYAVGA 202 Score = 89.3 bits (221), Expect = 4e-22 Identities = 51/310 (16%), Positives = 95/310 (30%), Gaps = 13/310 (4%) Query: 2 TSILTNVAAMAALQTLRGINDSLEGTQNRVSSGYRVEKASDNAAYWSIATTMRSDNKALS 61 + A+ T + ++G ++N + T +S Sbjct: 202 ANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAE 261 Query: 62 AVSDALGLGAAKVDTAYSAMDSAIDVISEIKAKIVAATEKGVDKTKVQEEIGQLQQQLLS 121 A + A + K + + ++ ++ KV + + + Sbjct: 262 AKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAAN 321 Query: 122 IAQSASFSGENWVAGADGTKSVVSTFVRDGNGNVSVKTTDYVLDTSSTGNVLFGMTSTGT 181 + + S +N + D N S K +D + + G + Sbjct: 322 VDAATLQSSKNVYTSVVNGQ----FTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEY 377 Query: 182 IETTSGIIGTSYGTIGSIYSMDISTFGSAEIS---------MALTSIEAGLEAMTKAASQ 232 +G T G I L SI++ L + S Sbjct: 378 TANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSS 437 Query: 233 LGSISTRIELQENFVGALSDSIDSGVGRLVDADMEEESSKLTALQTQQQLAIQSLSIANS 292 LG+I R + +G +++S R+ DAD E S ++ Q QQ L+ AN Sbjct: 438 LGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQ 497 Query: 293 SAQNILTLFR 302 QN+L+L R Sbjct: 498 VPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 86.6 bits (214), Expect = 6e-21 Identities = 44/323 (13%), Positives = 94/323 (29%), Gaps = 15/323 (4%) Query: 28 TSAAAVNALAVLRSINKEASQTQQQVSSGYRIETAADDASYWSVATVMRSDSTNLGTIGD 87 T++ ++ L S +++SSG RI +A DDA+ ++A S+ L Sbjct: 6 TNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASR 65 Query: 88 ALGLGAAKVDATYTAMN---SAIDLVSQIRAKLVAAREPGTDKDKINAEISEYKEQLKSV 144 G + T A+N + + V ++ + +D I EI + E++ V Sbjct: 66 NANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRV 125 Query: 145 VESTSFAGENWLLNSDKTAPPTWSVISGFVRASTGEYQAQTIDF------------PSSQ 192 T F G L ++ + + + +++ Sbjct: 126 SNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDL 185 Query: 193 TILIDKNNASGGLFTKAIDAQAINNTGTGPRNYYLLDAGSTTPATGSEIAIDKNTTDAQL 252 A + N+G + + + + + Sbjct: 186 KSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNT 245 Query: 253 VDMLDVTDALFSSLTTTAASIGVMKTRIDDQIDYAADLSDSIDKSVGALVDTDMDEASIR 312 L T + A G +K + ++ +ID G + + Sbjct: 246 AVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTING 305 Query: 313 QKAIETQKQMAVEAISILNTAAS 335 +K T + A ++ Sbjct: 306 EKVTLTVADITAGAANVDAATLQ 328 Score = 56.2 bits (135), Expect = 7e-11 Identities = 39/289 (13%), Positives = 79/289 (27%), Gaps = 7/289 (2%) Query: 55 SGYRIETAADDASYWSVATVMRSDSTNLGTIGDALGLGAAKVDATYTAMNSAIDLVSQIR 114 ++ A + + + T G AK A D Sbjct: 223 VPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG 282 Query: 115 AKLVAAREPGTDKDKINAEISEYKEQLKSVVESTSFAGENWLLNSDKTAPPTWSVISGFV 174 + G D + + ++ +V + T+ A + SV++G Sbjct: 283 VTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQF 342 Query: 175 R--ASTGEYQAQTIDFPSSQTILIDKNNASGGLFTKAIDAQAINNTGTGPRNYYLLDAGS 232 T A+ D ++ + + G A A Sbjct: 343 TFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMF-----IDK 397 Query: 233 TTPATGSEIAIDKNTTDAQLVDMLDVTDALFSSLTTTAASIGVMKTRIDDQIDYAADLSD 292 T + I D + L D+ S + +S+G ++ R D I + Sbjct: 398 TASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVT 457 Query: 293 SIDKSVGALVDTDMDEASIRQKAIETQKQMAVEAISILNTAASKILILL 341 +++ + + D D + +Q ++ N +L LL Sbjct: 458 NLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 36.8 bits (85), Expect = 1e-04 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 20/124 (16%) Query: 327 NDDSMFNIGSAVPRQEMVLAMEKIGTILKE---RGGAVAIRGHTDGRQYKGGQNENWRLS 383 D +FN A + E A++++ + L + G+V + G+TD G N LS Sbjct: 218 KSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRI---GSDAYNQGLS 274 Query: 384 MDRAQSAYYMLVRGGLNETRVSQVS------------GFADRRLKLPADPFNAANRRIEI 431 RAQS L+ G+ ++S +R L A +RR+EI Sbjct: 275 ERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALID--CLAPDRRVEI 332 Query: 432 LVQA 435 V+ Sbjct: 333 EVKG 336
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.0 bits (83), Expect = 1e-04 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 8/123 (6%) Query: 2 IVVVDERELVKDGYTSLFGREGIP-STGFDPSEFGEWVQTAADSDIAAVEAFLIGQGQRS 60 I+V D+ ++ R G + + W+ A D D+ + ++ + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-AGDGDLVVTD--VVMPDENA 62 Query: 61 FELPRAIRDR-SMAPVIAVSDQPSLENTLALFDCGVDDVVRKPVHPREILA---RAAAIR 116 F+L I+ PV+ +S Q + + + G D + KP E++ RA A Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 117 RRL 119 +R Sbjct: 123 KRR 125
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 45.3 bits (107), Expect = 3e-07 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Query: 356 LTLMSGNVYSANGQSGVTVTGFPQTNGLGTIKSGALEGSNVDLAGELTEMIEAQRSYTAN 415 L GN + S T Q N + + + S V+L E + Q+ Y AN Sbjct: 474 LVSDIGNKTATLKTSSAT-----QGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLAN 528 Query: 416 SKVFQTGSDIMDVLVNLK 433 ++V QT + I D L+N++ Sbjct: 529 AQVLQTANAIFDALINIR 546 Score = 37.6 bits (87), Expect = 7e-05 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 6 SMKTAVSGMNAQANRLSTVSDNIANVNTTGYKAVSTSFS-SLVLPSSGGNYNSGGVQTSV 64 + A+SG+NA L+T S+NI++ N GY +T + + +GG +G + V Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGV 62 Query: 65 RQ 66 ++ Sbjct: 63 QR 64
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 90.4 bits (224), Expect = 2e-21 Identities = 102/550 (18%), Positives = 192/550 (34%), Gaps = 65/550 (11%) Query: 4 TSALNTAQNIFNNTGTQSSVVSNNISNAGNKDYVRRQAMLTTSL----------NGAQVV 53 +S +N A + N + SNNIS+ Y R+ ++ + NG V Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 54 KIDRAQEDALLRQYLKSSSQDSAQQTLLSGLEDLKSIMGGNDYETSPSTYLGVFQQKLQA 113 + R + + Q + +Q S + + +++ + +S +T + F LQ Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNML--STSTSSLATQMQDFFTSLQT 118 Query: 114 FRTSPGSTVAAQGAITAAQDVANSLNNASQSVQDVRANADKEIATAVDTLNTLLSEFEKA 173 ++ A Q I ++ + N Q ++D + I +VD +N + Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 174 NNAVKTATATGADTS--GALDEREKVLKQISQIVGVSATTRDNNDMVLSTPDG-TILFET 230 N+ + T GA S LD+R++++ +++QIVGV + +D ++ +G +++ + Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGS 238 Query: 231 IPRKVTFKSQDIYTATTVGNSVYIDGVALPLGKGSTTTGQGSLQSLLQIRDEIAPNFQKQ 290 R+ + + Y+DG A + GSL +L R + + Sbjct: 239 TARQ--LAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNT 296 Query: 291 LDETARGLVSLFKEQNTAGPPA---YVPGLFTWSGGTVDTGATAVAGMASTI-------- 339 L + A F Q+ AG A F V +A Sbjct: 297 LGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPAVLQNTKNKGDVAIGATVTDASAV 356 Query: 340 -------------------------TVSTRVITSQGGDPMRLRDGGVNAAGVVLNTSGVS 374 TV+ D + L G A VS Sbjct: 357 LATDYKISFDNNQWQVTRLASNTTFTVTPDANGKVAFDGLELTFTGTPAVNDSFTLKPVS 416 Query: 375 GYTAELDRLYT-----AMTSD---MDFDPAAGAPVGFDATTG---IDSNVSIMEYATNSL 423 +D L T AM S+ D D G D + + S + + + Sbjct: 417 DAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQA-LLDLQSNSKTVGGAKSFNDAYASLV 475 Query: 424 GWLEQYRSNATTAAENTAAALSRSDEAYSNETGVNLDEELTLLLDIEQSYKAATKILNAV 483 + + T++ +++ + +GVNLDEE L +Q Y A ++L Sbjct: 476 SDIGNKTATLKTSSATQGNVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTA 535 Query: 484 DEMLKSLLDI 493 + + +L++I Sbjct: 536 NAIFDALINI 545
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.3 bits (68), Expect = 0.002 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 2/98 (2%) Query: 68 YAYSLAKAGRYEEALAMLD--TVKDQNSAEVLNYRGYATRKLGRTDEGISYYLQSVKMDP 125 A++ ++G+YE+A + V D + G + +G+ D I Y MD Sbjct: 42 LAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDI 101 Query: 126 QYAKVREYLGEAYVIKGRLDLAKEQLTTIKAICGTACE 163 + + + E + KG L A+ L + + E Sbjct: 102 KEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTE 139
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 129 bits (326), Expect = 2e-37 Identities = 75/327 (22%), Positives = 137/327 (41%), Gaps = 34/327 (10%) Query: 1 MVTGAYGSIGRHVASALARHGWSVHGIGHG--------EWSRDQMSQWGLSAWHQQDVS- 51 +VTGA G IG HV+ L G V GI + + +R ++ +H+ D++ Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 52 LDGLRAM--EVRPALIVHCAGSGSVGASVAEPYTDFLRTVVPTVAVLEFLRVDCPSAALV 109 +G+ + + +V S+ P+ + + +LE R L+ Sbjct: 64 REGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCR-HNKIQHLL 122 Query: 110 YPSSAAVYGIADKFPMSEGSSL-RPTSPYGVHKRSAEELIREYARLFGLNASIVRLFSIY 168 Y SS++VYG+ K P S S+ P S Y K++ E + Y+ L+GL A+ +R F++Y Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVY 182 Query: 169 GEGFRKQL-LWDACRRIIANE-YEFFGTGNETRDWLHVSDAADLMIHAADHASPRCP--- 223 G R + L+ + ++ + + + G RD+ ++ D A+ +I D Sbjct: 183 GPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWT 242 Query: 224 --------------VVNGGGGVAITVRDVVAELFALLSRRNAAEFCGTVRPGDPSDYQAD 269 V N G + + D + L L ++PGD + AD Sbjct: 243 VETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM-LPLQPGDVLETSAD 301 Query: 270 IRQAL-AWGWQPRISWKEGLALYVSWF 295 + G+ P + K+G+ +V+W+ Sbjct: 302 TKALYEVIGFTPETTVKDGVKNFVNWY 328
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 91.0 bits (226), Expect = 9e-23 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 22/183 (12%) Query: 3 KALITGVTGQDGSYLAELLLSKGYEVHGIKRRASLFNTDRIDHLYQDPHEDRRRLIL--- 59 K L+TG G G ++++ LL G++V GI N Y D + RL L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDN----LND------YYDVSLKQARLELLAQ 51 Query: 60 -----HYGDMTDSSSLIRIMQNVQPDEIYNLAAQSHVAVSFEEPEYTANSDALGALRILE 114 H D+ D + + + + ++ + V S E P A+S+ G L ILE Sbjct: 52 PGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILE 111 Query: 115 AIRILGLEKKSRFYQASTSELYGLVQETPQRETTPF-YPRSPYAVAKLYAYWITVNYREA 173 R ++ AS+S +YGL ++ P +P S YA K + Y Sbjct: 112 GCRHNKIQ---HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHL 168 Query: 174 YGI 176 YG+ Sbjct: 169 YGL 171
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 89.8 bits (223), Expect = 1e-22 Identities = 63/336 (18%), Positives = 119/336 (35%), Gaps = 56/336 (16%) Query: 6 KIYVAGHRGMVGSAILRRLASAGYTNV----------ITRTHADL-------------NL 42 K V G G +G + +RL AG+ V ++ A L +L Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 43 VDQAATVRFLAEEKPDYIFMAAAKVGGIHANNTYRAEFLYQNLMIETNIVHAAWQAGVQG 102 D+ A + +F++ ++ ++ A + NL NI+ +Q Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA-YADSNLTGFLNILEGCRHNKIQH 120 Query: 103 MLFLGSSCIYPRDCPQPIREDYLLTGPLEQTNEPYAIAKIAGVKLCESYNRQYGTQYASA 162 +L+ SS +Y + P D ++ YA K A + +Y+ YG Sbjct: 121 LLYASSSSVYGLNRKMPFSTD----DSVDHPVSLYAATKKANELMAHTYSHLYGLPATGL 176 Query: 163 MPTNLYGPNDSYDLNNSHVLPALIRKAHEAKIRGEKELVVWGSGQPMREFLYVDDMADAC 222 +YGP D+ L + E K + V+ G+ R+F Y+DD+A+A Sbjct: 177 RFFTVYGPWGRPDM----ALFKFTKAMLEGK-----SIDVYNYGKMKRDFTYIDDIAEAI 227 Query: 223 VFLMENQISEG------------------LFNIGTGEDVTIRQLAETVMEIVGFEGGIVY 264 + L + ++NIG V + + + + +G E Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNM 287 Query: 265 DISKPDGTPRKLLNVDRM-KALGWQARTSLADGIAK 299 +P + + + +G+ T++ DG+ Sbjct: 288 LPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKN 323
>PF05946#Toxin-coregulated pilus subunit TcpA Length = 199 Score = 28.7 bits (64), Expect = 0.041 Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 397 PATGFSIGVSRLMTALKNLGKLGASEVIEPVLVTVM 432 PAT + S+L + L +LGK+ + E P + T M Sbjct: 58 PATADATAASKLTSGLVSLGKISSDEAKNPFIGTNM 93
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.0 bits (67), Expect = 0.016 Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 125 DYRGGGRSSARETAARVAAGGIARLVVPGVTVRGALVQIGKHKIDRRNW 173 DY+ + + G +AR++ PG ++V G I + Sbjct: 564 DYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTL 612
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 58.5 bits (141), Expect = 3e-12 Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 19/249 (7%) Query: 8 MAGKRGVIMGVANNRSIAWGIAKAIHAQGGEV-ALTYQGDALKKRVEPLAAEIDATLVGH 66 + GK I G A + I +A+ + +QG + A+ Y + L+K V L AE Sbjct: 6 IEGKIAFITGAA--QGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 67 CDVADEATIDAVFENVEKLWGKIDFLVHAIGFSDKDELTGRYIDTSPD-NFNKTMQISVY 125 DV D A ID + +E+ G ID LV+ G L I + D + T ++ Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGV-----LRPGLIHSLSDEEWEATFSVNST 118 Query: 126 SFTSVARRAEKLMT--EGGSMLTLTYYGAEKVMPNYNVMGVAKAALEASVKYLAVDLGPQ 183 + +R K M GS++T+ A + +KAA K L ++L Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 184 NIRVNAVSAGPIKT-----LAASGIGDFRYILKWNE---YNAPLRRTVTIEEVGDVGLYL 235 NIR N VS G +T L A G + I E PL++ ++ D L+L Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 236 LSDLSRSVT 244 +S + +T Sbjct: 239 VSGQAGHIT 247
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 103 bits (258), Expect = 5e-26 Identities = 85/394 (21%), Positives = 155/394 (39%), Gaps = 19/394 (4%) Query: 26 LLLAVVLVVLDGAIANVALPSIALSLQAEADNTVWVVSAYQLAVLVAILPCGALGEIYGA 85 L + VL+ + NV+LP IA +T WV +A+ L + G L + G Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 86 RRVFLIGVALFTAASAACGLA-GDLPLLILARFAQGLGAGAIMALAMMNLRQAQPQRMLG 144 +R+ L G+ + S + LLI+ARF QG GA A AL M+ + + P+ G Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 145 PIIGINAMVIAISSAAGPGIAGAILSVTTWPWLFAVNIPLGVMVLLGGGLLGHVEGAKRK 204 G+ ++A+ GP I G I W +L + + + V LL + + K Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLL--KKEVRIK 196 Query: 205 ----LKAKALLANTLMFILFFSGADRIATAPVSGAALIAASLACLFGLLRLERNSDVPLF 260 +K L++ ++F + F+ + I + + S+ ++ R P Sbjct: 197 GHFDIKGIILMSVGIVFFMLFTTSYSI--------SFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 261 PTDLLAAPAFRMAVIASVSCFCGQMLSYIALPFYLQHRLHMTPVVAG-LYMMPWPAATAI 319 L F + V+ F +P+ ++ ++ G + + P + I Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 320 IAPISGRLANRVKTSWLCAIGGALMALGLLVAGLTPPDPRGIGFLVGTVIAGLGFGLF-Q 378 I G L +R ++ IG +++ L A F+ ++ LG F + Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLET--TSWFMTIIIVFVLGGLSFTK 366 Query: 379 TPNNRILLLSAPKARSGAAGAMQGTARLLGQTVG 412 T + I+ S + +GA ++ L + G Sbjct: 367 TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTG 400
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 8e-08 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 7/201 (3%) Query: 707 RRDVVSEAASQLGAQLEEIGVQAENARIELEDAPDLTDIDERLRFQQAEVATDRGALAEA 766 D + +S L A+LE+ Q + IEL P+L DE FQ + Sbjct: 133 EADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE-PYFQNVSEEEVLRLTSLI 191 Query: 767 RARHESLARENEARQRRIMAIGQERETWRQRAASGEDHVATLREREEEAREEAADLEMAP 826 + + + + ++ + ER T R E+ + R ++ +A Sbjct: 192 KEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAK 251 Query: 827 DEFDDKRRALLSELQKAEEARRHAGDL-----LAEAERIQREADHKAATALSELAEYRER 881 ++ + + + + + A+ E K L +L + + Sbjct: 252 HAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN-EILDKLRQTTDN 310 Query: 882 RGRAEERLVSARERRQESESR 902 G L ER+Q S R Sbjct: 311 IGLLTLELAKNEERQQASVIR 331 Score = 38.3 bits (89), Expect = 2e-04 Identities = 30/215 (13%), Positives = 62/215 (28%), Gaps = 12/215 (5%) Query: 742 LTDIDERLRFQQAEVATDRGALAEARARHESLARENEARQRRIMAIGQERETWRQRAASG 801 LT + + + + + L + R + S + E + + + Sbjct: 127 LTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLR 186 Query: 802 EDHVATLREREEEAREEAADLEMAPDEFDDKRRALLSELQKAEEARRHAGDLLAEAERIQ 861 ++E+ + + E+ DK+RA + + + Sbjct: 187 LTS--LIKEQFSTWQNQKYQKELNL----DKKRAERLTVLARINRYENLSRVEKSRLDDF 240 Query: 862 READHKAATALSELAEYRERRGRAEERLVSARERRQESESRIREA---LNVPPHEALRLT 918 HK A A + E + A L + + ++ ES I A + Sbjct: 241 SSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEI 300 Query: 919 GLQPMQALPDPREVERELERLKMERERLGAVNLRA 953 + Q + + L ER A +RA Sbjct: 301 LDKLRQTTDNIGLLT---LELAKNEERQQASVIRA 332 Score = 34.0 bits (78), Expect = 0.004 Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 9/169 (5%) Query: 180 AELRLRAAETNLERLDDVTSQLESQIESLKRQARQANRFKTLSADIRAREAMLLHIRWVQ 239 + R + ++E +L + + R +L + + + + + Sbjct: 149 EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN 208 Query: 240 AKEAEAEADSALNQATVIVAEKAQAQMEAAKNQGIASLK------LPELREGEARAAAAL 293 + AE + L + I + +++E ++ +SL + E E + A+ Sbjct: 209 LDKKRAERLTVLAR---INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 294 QRLQIARSQLEEDAGRILRRRDELTRRLAQLAEDIRREERLVADNAVIL 342 L++ +SQLE+ IL ++E +I + R DN +L Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 312 bits (800), Expect = 6e-98 Identities = 108/471 (22%), Positives = 180/471 (38%), Gaps = 93/471 (19%) Query: 434 GRKVILLRVETSPEDIHGMHA--AEGILTTRGGMTSHAAVVARGMGTPCVVGAGTMRIDQ 491 + +++ + +P D ++ +G T GG TSH+A+++R + P VVG Sbjct: 154 AEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTK------ 207 Query: 492 RNERLLGIGVTLKKGDIITIDGSAGQVLKG----EVPMIQPELSGDFGRIMGWADRA--- 544 + ++ GD++ +DG G V+ EV + + + + WA Sbjct: 208 ------EVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEP 261 Query: 545 ------RRMTVRTNADTPADARAARSFGAEGIGLCRTEHMFFEGERIHVMREMILAEDEK 598 + + N TP D + G EGIGL RTE ++ + +++ E Sbjct: 262 STTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQLPTEEE-------- 313 Query: 599 GRRLALDKLLPMQRLDFTGLFTVMHGLPVTIRLLDPPLHEFLPKTDDEVAEVAFAMGMEP 658 Q + + M G PV IR LD D E++ + Sbjct: 314 ------------QFEAYKEVVQRMDGKPVVIRTLDI-------GGDKELSYLQLP----- 349 Query: 659 QALRQRVDALHEFNPMLGHRGCRLAISYPEIVEMQARAIFEAAVAAAHETGAAVVPEIMV 718 E NP LG R RL + +I Q RA+ A+ + +M Sbjct: 350 ----------KELNPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGNLK--------VMF 391 Query: 719 PLVGLRSELDYVKACIDAIASEVMAEA-GMRIDYLVGTMIELPRAALRAHVIAEAAEFFS 777 P++ EL KA + ++++E + VG M+E+P A+ A++ A+ +FFS Sbjct: 392 PMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFS 451 Query: 778 FGTNDLTQTTFGISRDDASAFIPTYQRKGIIEHDPFISLDFDGVGELISIAAERGRRTRN 837 GTNDL Q T R + + + P+ V +I A G+ Sbjct: 452 IGTNDLIQYTMAADRMNE---------RVSYLYQPYHPAILRLVDMVIKAAHSEGKWV-- 500 Query: 838 DMKLGICGEHGGDPASIRFCETIGLDYVSCSPFRVPIARLAAAQAVIAASR 888 G+CGE GD +I +GLD S S + AR + + Sbjct: 501 ----GMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEELK 547
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 32.7 bits (74), Expect = 0.001 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 51 ARGNPMSRIFITGSTDGLGLAAARTLISQGHDVV---LHARSRQRAAAIADTSAAALSLV 107 A+G FITG+ G+G A ARTL SQG + + ++ + A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 108 IGDLASAAETRSIADQVNA-FGRMDAVIHNAGIYLERSRGETP-EGHAKTLAVNV 160 D+ +A I ++ G +D +++ AG+ E T +VN Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNS 117
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.3 bits (112), Expect = 7e-09 Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 19/212 (8%) Query: 1 MAGRREEKREDLKARLIEAARERIARDGLTNLRARDITQDAGCALGGLYTVFSDLAELVI 60 MA + +++ ++ + +++ A ++ G+++ +I + AG G +Y F D ++L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 HVNSWTLKAL-EAKLTLPAARDKSPTDRLRNLAQGYLAFAVE--HRNLWKALFDHFPPDT 117 + + + E +L A P LR + L V R L + H Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 118 SPTP-------QWHLDEHLFLMDVIAEPLA--ELQPDMPPEDRAIRARTLFSAVHGVVSI 168 L+ + + + + L D+ A + G +S Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA-------IIMRGYISG 173 Query: 169 SLEGRFVGLPLERLAREVDELVVTIAAGAERR 200 +E L +E + V + Sbjct: 174 LMENWLFAPQSFDLKKEARDYVAILLEMYLLC 205
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 339 bits (871), Expect = e-116 Identities = 184/381 (48%), Positives = 248/381 (65%) Query: 45 RSLIVIFTAIVLDAVGIGLIFPILPSLLQEITHAQNVAPTIGAMTALYALMQFIFAPVLG 104 R LIVI + + LDAVGIGLI P+LP LL+++ H+ +V G + ALYALMQF APVLG Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 105 ALSDRLGRRPVLLISLAGAAVNYLFLAFAPNLTLLFVGRAIAGLTSANISVATAYITDIS 164 ALSDR GRRPVLL+SLAGAAV+Y +A AP L +L++GR +AG+T A +VA AYI DI+ Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124 Query: 165 PEEKRARRFGLFNAMFGLGFIIGPVAGGVLGDHWLRLPFIAAAVLNGANLLLAVFILPES 224 ++RAR FG +A FG G + GPV GG++G PF AAA LNG N L F+LPES Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 225 RPGSRETIDLAALNPLKPLRSVLEVKSLLPIVILFFIFSATGEAYGTCWALWGSDAFHWN 284 G R + ALNPL R + + ++ +FFI G+ W ++G D FHW+ Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 285 GLSIGLSLGAFGICQTLAQALLPGPAVRLLGERAAILVGVAGVSLALTVMAFAGQGWMIF 344 +IG+SL AFGI +LAQA++ GP LGER A+++G+ ++AFA +GWM F Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 345 AVMPIFTLGGIGVPALQSLATRQVDENSQGQFQGVLASVVSLASIAAPLGFSSLYFLVRE 404 +M + GGIG+PALQ++ +RQVDE QGQ QG LA++ SL SI PL F+++Y Sbjct: 305 PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT 364 Query: 405 EWPGAIWLSVVAVYALTVPLV 425 W G W++ A+Y L +P + Sbjct: 365 TWNGWAWIAGAALYLLCLPAL 385
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 85.9 bits (212), Expect = 2e-22 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 11/210 (5%) Query: 22 VVEAIGAAGGKAIAVQGDVSKAEQAQGVVDAAVREFGKLDVLVNNSGVYEFAPIGEVTEE 81 VV ++ A A A DV + + RE G +D+LVN +GV I +++E Sbjct: 48 VVSSLKAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDE 107 Query: 82 HYRRMFDVNVLGVLLTTQAAAKHL--GEGGSVINISSVVTSLGLPASAVYTGTKGAVEGI 139 + F VN GV +++ +K++ GS++ + S + + A Y +K A Sbjct: 108 EWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMF 167 Query: 140 NSVLAKELGPRKIRVNAILPGMVETEGTHT--------AGVIGSDLQQTMVAQTPLGRIG 191 L EL IR N + PG ET+ + VI L+ PL ++ Sbjct: 168 TKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG-IPLKKLA 226 Query: 192 QPDDIADIAVFLASDDARWLTGERLVASGG 221 +P DIAD +FL S A +T L GG Sbjct: 227 KPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (266), Expect = 9e-30 Identities = 72/256 (28%), Positives = 113/256 (44%), Gaps = 7/256 (2%) Query: 5 LAGKTALVTGSTEGIGYAIARQLARAGADVVINGRSEEKTANAAERLKGEG--AGGTVAA 62 + GK A +TG+ +GIG A+AR LA GA + + EK LK E A A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VAADVATAEGCDALVAKVPHVDILVNNAGIFQPLDFFEANDEVWDRHWQVNVMSAVRLSR 122 V A E + ++ +DILVN AG+ +P +DE W+ + VN SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 123 AYLPGMQNVDWGRVIFIASESGFNIPVEMIHYGVSKTADIAVARGLAKRMAGTGITVNSV 182 + M + G ++ + S M Y SK A + + L +A I N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 183 LPGPTLSEGVEAMLAEERAKTGKPIEEVAADFVKKHRGSSIIQRAASVEEIANLVTYLAS 242 PG T ++ ++ A+E E+V ++ + +++ A +IA+ V +L S Sbjct: 186 SPGSTETDMQWSLWADENGA-----EQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 243 PLASATTGASMRVDGG 258 A T ++ VDGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 31.6 bits (71), Expect = 0.007 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 22/132 (16%) Query: 202 DDWEGYY----RIDVGGYYGDVEKIRAAKIESI-----SGLVETFDNWRNGSETVDEQID 252 DDW+G+Y + D GY D E + K + GL + + +ET+ +++ Sbjct: 80 DDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELG 139 Query: 253 LELASAARGYLNAYYTFVERLAAGDYDVLLSGPI-----NAQYVERLIRHRALG------ 301 L L + F++R G V+LS P + +Y+ + +AL Sbjct: 140 LSLTEPLMEQVGT-EEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEIN 198 Query: 302 -ETVDERVQSAI 312 ET +R Q A+ Sbjct: 199 FETRGKRGQDAM 210
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 27.3 bits (60), Expect = 0.014 Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 64 FDAREFGTIYGWHRSFSLHIERWRAKRTLPSGTA 97 FDA I + S+ I+ + T +GTA Sbjct: 109 FDANGKENIASFMESYVEQIKENKKLDTTYAGTA 142
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 29.5 bits (66), Expect = 0.031 Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 23/124 (18%) Query: 41 LISGIIGGIVVGFLAGSPL------QVSGPAAG--------LAVIVFGF-----VEDYG- 80 L GII G V GF++ P Q+S G ++VI+FG+ V+ G Sbjct: 263 LCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGP 322 Query: 81 --VAMLAPVLIAVGFLQIAGGFLRVGSWFRAISPAVVHGMLAGIGILIILGQIHVLMDAK 138 V + ++V FL A L SWF I V G L+ +I L + Sbjct: 323 LYVLNIGVTFLSVSFL-TASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQE 381 Query: 139 PAAG 142 AG Sbjct: 382 AGAG 385
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 209 bits (533), Expect = 3e-61 Identities = 125/643 (19%), Positives = 239/643 (37%), Gaps = 73/643 (11%) Query: 15 STVVEKLGSL-EGTPRKSS----SPYGLNL----TEFTFGNEAWCALDAPGPNEALAHAQ 65 S + +LGS+ +GT R + G+ + T F + N +D PG + LA Sbjct: 27 SGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVY 86 Query: 66 HALLASDACILCVSSA----PEEAVLAAPYLRIIEASGTPCILFVNRMDEPRGRLRDVIA 121 +L D IL +S+ + +L + G P I F+N++D Sbjct: 87 RSLSVLDGAILLISAKDGVQAQTRIL----FHALRKMGIPTIFFINKID----------- 131 Query: 122 ALQDYANHTLLLRQIPIREGDRIIGSCDLISERAWRYREGQTSALIAIPESVAEREHEAR 181 Q+ + + + + I + I+ Q L P E Sbjct: 132 --QNGIDLSTVYQDIKEKLSAEIVIK--------------QKVELY--PNMCVTNFTE-- 171 Query: 182 SELLEHLSEFDDWLLEELIEDREPPSDALYAISSRVLSENRIIPVLIGAASHGNGMMRLM 241 SE + + E +D LLE+ + + + L S + PV G+A + G+ L+ Sbjct: 172 SEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLI 231 Query: 242 KALRHEAPPVGVLRQRLARAGNVDENKLTAVSFHAYHRQNIGKTVLVRAFGEGLRQGALL 301 + + ++ + + +++L F + + + +R + L + Sbjct: 232 EVITNKFYS----------STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV 281 Query: 302 GGSSLGAVQ-----DPGNGRSGSAIVPAPGDVFATVKSDHLPVPSLLTSGATVAPP--EW 354 S ++ NG G++ ++++ L + S+L G T P E Sbjct: 282 RISEKEKIKITEMYTSINGELCKIDKAYSGEI-VILQNEFLKLNSVL--GDTKLLPQRER 338 Query: 355 TEPPTPMLERILVPGSERDENKLSETLAKLSETDRGLVVLQEEGTGAQLVRAQGPVHLRD 414 E P P+L+ + P + L + L ++S++D L + T ++ G V + Sbjct: 339 IENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEV 398 Query: 415 LCRTLSEVFHIEVTDRMPSPIYRETIAKPSEVHYRHRKQTGGAGQFADVKLSIRPNERGR 474 C L E +H+E+ + P+ IY E K +E Y + +A + LS+ P G Sbjct: 399 TCALLQEKYHVEIEIKEPTVIYMERPLKKAE--YTIHIEVPPNPFWASIGLSVSPLPLGS 456 Query: 475 GFTFNETVKGGVVPRNYIPAVEAGAREAMEKGPLGFQVIDVGVTLFDGQHHAVDSSEHAF 534 G + +V G + +++ AV G R E+G G+ V D + G +++ S+ F Sbjct: 457 GMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADF 516 Query: 535 RTASRMGVRQALSEGSAVLMQPVFRSEIHIPSIYSGSLVQIVSALKGQVLGFDRDETAKG 594 R + + + Q L + L++P +I+ P Y ++ + Sbjct: 517 RMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVD---TQLKNN 573 Query: 595 WDIFRALIPGGALDDLARALRSATQGIGYFSKTFDHFEELYGK 637 I IP + + L T G + G+ Sbjct: 574 EVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGE 616
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 26.6 bits (58), Expect = 0.045 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 17/96 (17%) Query: 34 DEKANAHESRAV---IHKRLDEQARQIAHLDTRAAIRGGADAQIR-DEILTLRETVEKNH 89 D NA S + I +++ +QA++ + + A+ A AQ R ++ R+ Sbjct: 302 DANGNAIPSGELKDDIVEQIAQQAKEAGEVARQQAVESNAQAQQRYEDQHARRQ------ 355 Query: 90 ETVGPALEEWKRMKSIGYGISGLIAFAGLTTGGVIA 125 EE + IGYG+S + AG GV Sbjct: 356 -------EELQLSSGIGYGLSSALIVAGGIGAGVTT 384
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 63.5 bits (154), Expect = 4e-13 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 34/176 (19%) Query: 113 LGSGFIISPDGVIVTNNHVIDNALDIKVTLD------------DGTELPAKLIGTDPKSD 160 + SG ++ D ++TN HV+D L +G ++ + D Sbjct: 103 IASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGD 161 Query: 161 VAVLKIQA-------GKPLQTIAWGDSDKLKLGDQILAIGNPFGIGTTVTAGIVSARGRD 213 +A++K G+ ++ ++ + ++ I G P T + Sbjct: 162 LAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGD-KPVATMWESKGKITY 220 Query: 214 LHSGPYDDFIQIDAPINHGNSGGPLVDREGKVVGINTAIYSPNGGSVGVGFAIPSD 269 L + +Q D GNSG P+ + + +V+GI+ GV Sbjct: 221 LK----GEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG---------GVPNEFNGA 263
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 9e-13 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 10/171 (5%) Query: 5 RRKALVDAALRVIGDHGSLAVTMSDIARRAGVSPALAHHYFGSKEQLLIETIRSLLRQLR 64 R+ ++D ALR+ G + ++ +IA+ AGV+ + +F K L E + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 65 -RDTVAALKAARTPRERLSAVIRVSFHAD------QFAADTIAAWLAFYAEAQRSEETRR 117 + K P L ++ + + + I F E ++ +R Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 118 FLVIYARRLRSNLLADLKA---LLPADAAERIAEGAAAMIDGLYIRQSLKS 165 L + + L L R A I GL Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.4 bits (110), Expect = 1e-07 Identities = 74/352 (21%), Positives = 131/352 (37%), Gaps = 26/352 (7%) Query: 50 YSALVFFSAIVNVTTSLTLGIWSDRLKERRPLVLALSVAGMLGFGSIAIIHSPAIFIFST 109 Y L+ A++ + LG SDR RRP++L + + +A + ++ Sbjct: 45 YGILLALYALMQFACAPVLGALSDRFG-RRPVLLVSLAGAAVDYAIMATAPFLWV-LYIG 102 Query: 110 LLLVPMSGSTYSLLFASLRARTNQMERGEGAAVTATVRALFSGSWALAPGLIGLYLVNSP 169 ++ ++G+T ++ A + T+ ER A + A F P L GL SP Sbjct: 103 RIVAGITGATGAVAGAYIADITDGDER---ARHFGFMSACFGFGMVAGPVLGGLMGGFSP 159 Query: 170 SMTPAYGIAALASCTCFFLYFFF-APGNGTAGPAP-DAVGFLASLKRIFMPRVLIRVFIM 227 P + AAL F G P +A+ LAS + V+ + + Sbjct: 160 HA-PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV 218 Query: 228 SLLFALQRLNGMLLPLIITRAA-GGSVADVGF-IAGLTALLEMPFMMMWGMAQRRFRTAH 285 + L L +I +G +A L + M+ G R Sbjct: 219 FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERR 278 Query: 286 VLAFGALIYCAYLLLLGFASSPWHIYALLLVNACGAAAILGVPITYLQDLIADRP----- 340 L G + +LL FA+ W + ++++ A G + + L + + Sbjct: 279 ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQ-AMLSRQVDEERQGQLQ 337 Query: 341 GLGTSLLSLNTFIGTGIAAGLFAFGTRITNYSGTAFVGAGAGLAAIGALLYL 392 G +L SL + +G + ++A IT ++G A++ GA LYL Sbjct: 338 GSLAALTSLTSIVGPLLFTAIYA--ASITTWNGWAWI--------AGAALYL 379
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 30.2 bits (68), Expect = 0.005 Identities = 9/50 (18%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 12 MLTTQRKTLILDILRRDG-----QVIAKRVAEDFSLSEDTIRRDLREMAA 56 M QR I +I+ + +++ + +++++ T+ RD++E+ Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHL 50
>SECA#SecA protein signature. Length = 901 Score = 28.7 bits (64), Expect = 0.050 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 56 RDEAGNIWKYNDPENFSL-REALGIHLGISPTNIAIGGGIDELLGQIVRLVIEAGAPVVT 114 R E G + + PE F++ REA G+ ++ + GG+ I + G + Sbjct: 53 RLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTA 112 Query: 115 SLGAYPTFNFHVAGFGGRLVTVPYVND 141 +L AY + G+ V V VND Sbjct: 113 TLPAY------LNALTGKGVHVVTVND 133
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 91.8 bits (228), Expect = 4e-23 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 6/173 (3%) Query: 9 LITGITGQDGAYLAEFLLEKGYIVHGLKRRSSSFNTSRIEHLYEDPHVENPRFILHFGDM 68 L+TG G G ++++ LLE G+ V G+ + ++ S + E + P F H D+ Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLE--LLAQPGFQFHKIDL 61 Query: 69 TDSTNLIRVVQETQPDEIYNLAAQSHVQVSFETPEYTANADGTGTLRLLEAIRLLGLTKK 128 D + + + ++ + V+ S E P A+++ TG L +LE R + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI--- 118 Query: 129 TRFYQASTSELYGKVQEVPQSETTPF-YPRSPYAAAKLYAYWIVVNYREAYGM 180 AS+S +YG +++P S +P S YAA K + Y YG+ Sbjct: 119 QHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGL 171
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 36.7 bits (85), Expect = 3e-04 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 18/167 (10%) Query: 256 DNDQVEQIKSIMELGERQTKIEQSRTEARATISALEAADDLSLTLQNMVIPDSIGAMQRE 315 + + V + +++L + + +T++ + LE L + E Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL------------SRSIE 161 Query: 316 LRAQEQDLERLLETYGNTAEAVVDMRAKIVKSRTDLKLATDRYLQSIRSKLAALDHEGDV 375 L + + N +E V ++K + L E Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQ---FSTWQNQKYQKELNLDKKRAERL- 217 Query: 376 VRSALAAAHEKRARSALAQTELARLQRMAEKEQTALDKLEEQRRGLA 422 + LA + S + ++ L + K+ A + EQ Sbjct: 218 --TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYV 262
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 171 bits (435), Expect = 1e-52 Identities = 69/334 (20%), Positives = 132/334 (39%), Gaps = 37/334 (11%) Query: 21 RIMVTGGTGFLGSFLCERLLREGNDVLCVDNFYTGS----RDNVLHLLDDPRFEILRHDI 76 + +VTG GF+G + +RLL G+ V+ +DN + L LL P F+ + D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 77 TFPLYV-------EIDEIYNLACPASPVHYQ-HDPVQTVKTNVHGAINMLGLAKRTKAK- 127 + + ++ + V Y +P +N+ G +N+L + K + Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLA-VRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 128 IFQASTSEVYGDPAVHPQPEEYRGSVSPIGPRACYDEGKRCAETLFFDYHRQYGVEIRVA 187 + AS+S VYG P + P+ Y K+ E + Y YG+ Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDS-VDHPVSL---YAATKKANELMAHTYSHLYGLPATGL 176 Query: 188 RIFNTYGPRMQTNDGRVVSNFIVQALRNEPITIFGDGRQTRSFCYVDDLIDGFIRLMAAP 247 R F YGP + + + F L + I ++ G+ R F Y+DD+ + IRL Sbjct: 177 RFFTVYGPWGRPD--MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVI 234 Query: 248 A--------GVTGP---------INLGNPGEFQVRELAEMVIEMTGSKSGIVFKALPIDD 290 P N+GN ++ + + + + G ++ L D Sbjct: 235 PHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGD 294 Query: 291 PTQRKPDISRATQQLGWQPKVNLREGLERTIAYF 324 + D + +G+ P+ +++G++ + ++ Sbjct: 295 VLETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 29.5 bits (66), Expect = 0.027 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 366 QQGRVEEAKQCYLSCLDYVSYLPEAKFRLAICALQEGDTDRA---YDLLVDLVK 416 G+ + A Y P F A C LQ+G+ A L +L+ Sbjct: 82 AMGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIA 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.003 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 36 THSLVILDNRELDRQCLAQCMAAQKADLQILAFGSIEEWKQKRDEYAPLAAILLNIGGKK 95 LV D+ + A +A + + + ++ ++ Sbjct: 4 ATILVADDDAAI---RTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDV---V 56 Query: 96 VDEPAVSEQIRKLSSEFASTPLIVLADSDDFGQIVRALEYGAKGFIP 142 + + + + ++ P++V++ + F ++A E GA ++P Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLP 103
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 198 bits (504), Expect = 2e-63 Identities = 80/339 (23%), Positives = 141/339 (41%), Gaps = 39/339 (11%) Query: 5 RVLITGGAGLIGSHIADLVALEKPREIIVLDNF-----VRGRRDNLSTAISSGSVNIIEG 59 + L+TG AG IG H++ + LE +++ +DN V ++ L ++ + Sbjct: 2 KYLVTGAAGFIGFHVSKRL-LEAGHQVVGIDNLNDYYDVSLKQARLE-LLAQPGFQFHKI 59 Query: 60 DIRDRALLAKTFA--GIDIVFH---QAAIRITQCAEDPRLAFDVLAEGTFNVLEAAVKAG 114 D+ DR + FA + VF + A+R + E+P D G N+LE Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYS--LENPHAYADSNLTGFLNILEGCRHNK 117 Query: 115 VSKVVAASSASVLGLAESFPTTEAHHPYNNRTIYGAAKTFNEGLLRSFAEMYGLRYVALR 174 + ++ ASS+SV GL P + + ++Y A K NE + +++ +YGL LR Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 175 YFNVYGPRMDVYGAYTEVLIRWMERLAAGMPPLIYGDGSQTMDFVDARDIARANILAAKS 234 +F VYGP A ++ + + G +Y G DF DIA A I Sbjct: 178 FFTVYGPWGRPDMAL----FKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233 Query: 235 DVTD------------------EVFNVASGQEISLLELAQMLSSVMGVSLEPQHKEARTV 276 V+N+ + + L++ Q L +G+ + + Sbjct: 234 IPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-- 291 Query: 277 NG-VTRRLADISKAERLLGFKAEISMEQGLRDLVAWWQQ 314 G V AD ++GF E +++ G+++ V W++ Sbjct: 292 PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 56.4 bits (136), Expect = 1e-10 Identities = 20/184 (10%), Positives = 63/184 (34%), Gaps = 4/184 (2%) Query: 177 SILRSTAKLSRLQAEMAGAKEITFDQTTGADQQFSSGIYNEE----RVIFQARASALERQ 232 S+L++ + +R Q + + D+ + + EE + + + S + Q Sbjct: 142 SLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ 201 Query: 233 SKALTELRELLTTEISTLEEKLVGADENIKSVEDQLTSVKSLVQKGLTISSRQLDLERLL 292 + E T+ ++ + + + +L SL+ K L+ E Sbjct: 202 KYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKY 261 Query: 293 TTYRSDKLDLVTAIMRGRQAVSETTRNLEGLSDTRRSEVAVEAQAERANLDQLKMKREMT 352 ++ + + + + + ++ ++E+ + + N+ L ++ Sbjct: 262 VEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKN 321 Query: 353 QKLL 356 ++ Sbjct: 322 EERQ 325
>INTIMIN#Intimin signature. Length = 939 Score = 35.8 bits (82), Expect = 0.002 Identities = 60/325 (18%), Positives = 95/325 (29%), Gaps = 35/325 (10%) Query: 1168 NASGAYTYTINESNATVQALRQSTNTLSDVFSYTMRDSAGATATANLTVTIHGANDAPVL 1227 N+S TI TV + Q + + + SA A T +T T + Sbjct: 537 NSSNNVLLTI-----TVLSNGQVVDQVGVTDFTADKTSAKADGTEAITYTATVKKNGVAQ 591 Query: 1228 AVQTTTQNATVGSA--------------FSFTLPTTTFSDVDSGDTLAYAATSADGTALP 1273 A + N G+A + TL + V A ++ + A+ Sbjct: 592 ANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKPGQVVVSAKTAEMTSALNANAVI 651 Query: 1274 SWLSFNASTRTFSGTPT---AGG----TYGVKVTATDLGGLAANETFNIAVSVPGNTTPT 1326 AS T A G TY VKV D TF + N+T Sbjct: 652 FVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDKPVSNQEVTFTTTLGKLSNSTEK 711 Query: 1327 AVAD-------TGDATEKGGV-ANGSGGAVASGNVLTNDTDPDSGDTKTVTAVKFGATPG 1378 + T K V A S AV + D + V G Sbjct: 712 TDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGK 771 Query: 1379 TLGSALNGTYGSLVLNA-SGAYSYAVNENNATVQALRQSTNTLSDVFSYTMRDSAGATAT 1437 L +L + +G Y++ TL + + T+ + T Sbjct: 772 LPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQT 831 Query: 1438 ANLTVTIHGANDAPVLAVQTTTQNA 1462 A T+ + P ++ + T +A Sbjct: 832 ATYTIATPNSLIVPNMSKRVTYNDA 856 Score = 34.7 bits (79), Expect = 0.004 Identities = 58/359 (16%), Positives = 108/359 (30%), Gaps = 42/359 (11%) Query: 901 WQPQTTGTYTIRSRAVDDNVNLETPSAGRTVTVSGPNY------TSLFGSATPAVVNTND 954 + + Y + +RA D N N +S T T A + + Sbjct: 517 YVQGGSNVYKVTARAYDRNGNSSNNVLLTITVLSNGQVVDQVGVTDFTADKTSAKADGTE 576 Query: 955 TSAVELGFKFQTSV-AGTVTGIRFYKGSQDTGTHTGSLWSSTGTRIATLTFTNETASGWQ 1013 K A G+ ++ ++ G+ AT+T ++ Sbjct: 577 AITYTATVKKNGVAQANVPVSFNIVSGTAVLSANS---ANTNGSGKATVTLKSDKPGQ-- 631 Query: 1014 TAYFTSPVALTVGQTYTASYHTNSGHYSTTTNYFTSNVTSGPLTAPASGNGVYRY---GS 1070 A T T++ + N+ + T + + + TA A+G Y Sbjct: 632 ----VVVSAKTAEM--TSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVM 685 Query: 1071 NSLFPTSTYQSTNYWVDVMFTTSGSNTTPTAVADAGDATEKGGVANG-----------SG 1119 P S +V FTT+ + + + K + + S Sbjct: 686 KGDKPVSNQ-------EVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSD 738 Query: 1120 GAVASGNVLTNDTDPDSGDTKTVTAVKFGATSGTLGSALNGTYGSLVLNA-SGAYTYTI- 1177 AV + D + V G L +L + +G YT+ Sbjct: 739 VAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSA 798 Query: 1178 NESNATVQALRQSTNTLSDVFSYTMRDSAGATATANLTVTIHGANDAPVLAVQTTTQNA 1236 N + A+V A TL + + T+ + TA T+ + P ++ + T +A Sbjct: 799 NPAIASVDA-SSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLIVPNMSKRVTYNDA 856
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 169 bits (429), Expect = 7e-52 Identities = 88/352 (25%), Positives = 143/352 (40%), Gaps = 45/352 (12%) Query: 1 MRILVTGGAGFIGSALVRHLVSEIGAEVLNVDALTYAGNPASLK----SVESAPNYQFLH 56 M+ LVTG AGFIG + + L+ G +V+ +D L + SLK + + P +QF Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEA-GHQVVGIDNLNDYYDV-SLKQARLELLAQPGFQFHK 58 Query: 57 ADICDRARMLEAFASFRPEIVMHLAAESHVDRSISSAADFIQTNIVGTFSLLDAARYYWD 116 D+ DR M + FAS E V V S+ + + +N+ G ++L+ R+ Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN-- 116 Query: 117 GLDARDKSSFRFLHVSTDEVYGSLGDEGLFEETTPYDPSSPYSASKAASDHLAIAWHRTY 176 L+ S+ VYG + + P S Y+A+K A++ +A + Y Sbjct: 117 -------KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLY 169 Query: 177 GLPVVVSNCSNNYGPFHFPEKLIPLMILNALEGKPLPVYGNGANVRDWLYVEDHA----R 232 GLP YGP+ P+ + LEGK + VY G RD+ Y++D A R Sbjct: 170 GLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 233 ALFTIASRGR--------------PGEKYNVGGRNERRNIDVVHRICAILDGVYSDKAPH 278 I P YN+G + +D + + L G+ + K Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDAL-GIEAKK--- 285 Query: 279 ARLITKVTDRPGHDAR--YAIDASKLESELGWKAQETFETGIEKTVHWYLEN 328 + D A D L +G+ + T + G++ V+WY + Sbjct: 286 -----NMLPLQPGDVLETSA-DTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 27.7 bits (62), Expect = 0.017 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 218 KAYLATIVSARTGLSEADARTRVDTVLKRIDDA 250 K L V+ T L++ D+ VD V + Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSY 36
>cloacin#Cloacin signature. Length = 551 Score = 27.8 bits (61), Expect = 0.010 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 25 GGAGSGSGSGA---SGSGSGTMSGSDTGGSGNTNSNGAGANTTVGAGATGATGSGGDPND 81 GG G G +GA SG+ +G +G GG + S + N G G+ GG Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 82 CQRQQAGGTGNPAPTSGNNST 102 G +G + T GN S Sbjct: 63 GNGGGNGNSGGGSGTGGNLSA 83
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.3 bits (73), Expect = 0.002 Identities = 25/178 (14%), Positives = 44/178 (24%), Gaps = 15/178 (8%) Query: 91 APARALSLADVAA--RVRAASERSAVQAGQALREIPSGFRQQEPQPAVMPEPPRAAS--- 145 A V + + +E++ + P + + QP P + Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNI 1155 Query: 146 ---SQPQPTQPVFTAVAAPVSPGPVRQPLEPAFAETLQATAAEPAAVAAETAPPA--LEP 200 T A S + E T + P T P E Sbjct: 1156 KEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSES 1215 Query: 201 AHSPTERFLPSVVEEAQPTLLSEDAGLQISRSFEELAAAIDGAERRSLDEIAEDMLRP 258 ++ P R SV E A S + A D + +++ + Sbjct: 1216 SNKPKNRHRRSVRSVPHNV---EPA--TTSSNDRSTVALCDLTSTNTNAVLSDARAKA 1268
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 51.6 bits (123), Expect = 2e-08 Identities = 47/283 (16%), Positives = 83/283 (29%), Gaps = 14/283 (4%) Query: 334 GTFDVDDLLADVSRYPVPRPVLQRANLAPVSPEPAPVEVAPVAAAPVQPEAIAPAPVLSA 393 G +D+ + + V + N P +A P P P + Sbjct: 976 GRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPV---PPPAPAT 1032 Query: 394 PIEMALAYAAEAARPVASQPAAVTPPHPVATAYPRAQQSAPEADDPFAGHDFELDLAGIE 453 P E AE ++ + + ++ A EA + ++A Sbjct: 1033 PSETTET-VAENSKQESK--TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 454 LELADLDFSEAVEPAPQPKAQPAPAV--HQQATPEYPQAAVPAQPAPALVSEEPAPAPTP 511 E + +E E A K + A Q P+ P Q V + PA Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 512 APAFNWAPAAEASAAESTEDLPFDPAMISDPEDRPETVDDMHVPALPPVESPPPVAKTAD 571 P N E + +T PA + + V V P A Sbjct: 1150 DPTVN---IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 572 FDFDLDAEIASFFEPAKPRET--AAPARNMAAAAATPIKPTIA 612 +++E +S + R + + P A ++ + T+A Sbjct: 1207 TQPTVNSE-SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 35.4 bits (81), Expect = 0.001 Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 54/247 (21%) Query: 804 DKTPSVSPRKVRTMI--VKPDGTLVAREESAPVDQPAPSAQPMPSGQPPVTAQSAPS--- 858 D T +P ++ + V + +AR + APV PAP+ PS A+++ Sbjct: 993 DTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA---TPSETTETVAENSKQESK 1049 Query: 859 -----------------------APSAPIAPPVAGTAATFPASAEIASADARSAAPV--- 892 + A + + E + + + A V Sbjct: 1050 TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109 Query: 893 ----------QTAPAQLSSAATADEQAANPAPVDAPVRPVKTATIADTAPVPIARPADQ- 941 Q P S + EQ+ P P R AD Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169 Query: 942 ------PVNVVGTVTDKGNVRT---PAQQPKPTQVASATPAVAQPQQAVSVGGYGLQIAS 992 NV VT+ V T + P+ T A+ P V + + S Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Query: 993 LPSEDEA 999 +P E Sbjct: 1230 VPHNVEP 1236
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.001 Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 50 TISDFWIDPIFTRQGLGSALLQRIEKDIAGRGFETAAVQTHSGNSEAIGFFRKNGYGI 107 I D + + ++G+G+ALL + + F ++T N A F+ K+ + I Sbjct: 91 LIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.4 bits (76), Expect = 2e-04 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 72 MGYAALSQALTKTVMLHLLYVDPSLQRQGIGR---DIFAELETCFPDAEIMRLEVEPQNA 128 +G + ++ + V +++G+G E +M LE + N Sbjct: 77 IGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLM-LETQDINI 135 Query: 129 AAIAFYQAHGFT 140 +A FY H F Sbjct: 136 SACHFYAKHHFI 147
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 28.8 bits (64), Expect = 0.003 Identities = 8/27 (29%), Positives = 15/27 (55%) Query: 75 IAPKDPARQVVAYPDNFRYTRTQPWTH 101 IAP + ++ +P + + R +PW H Sbjct: 173 IAPAEDGYRLAGFPPDHQAWREEPWIH 199
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 80.8 bits (199), Expect = 4e-18 Identities = 56/249 (22%), Positives = 86/249 (34%), Gaps = 16/249 (6%) Query: 451 TGTPTTTTKLYTGTNGNDIMPHDGQSNGGNETFKGLAGNDLLKGGAGADVIDGGSGNDTA 510 T Y G D + + G N T + D + Sbjct: 232 NETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTATDSSKAL 291 Query: 511 SYAGSNAGVHVSLATWTASGGHATGDKLVSIENVTGSSYDDVLTGGN--------NGGNV 562 ++ +AG + S S +V G + + G +G ++ Sbjct: 292 IFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDI 351 Query: 563 LNGGAGADKLDGGAGGDVIIGGAGKDIMTGGTSSDTFVFKTATETGSGWNRDVITDFQHG 622 L G + + L GGAG DV+ GGAG D + GG DTFV+ + ++ D I DFQ G Sbjct: 352 LVGNSADNILQGGAGNDVLYGGAGADTLYGGAGRDTFVYGSGQDSTVA-AYDWIADFQKG 410 Query: 623 VDKIDLSAIDANGSAQGDSAFHFQAQENALFDKKAGALAWHYEDDHTVIQADLNGDGVHD 682 +DKIDLSA G + + A + T + G D Sbjct: 411 IDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAA-------NSITNLWLHEAGHSSVD 463 Query: 683 FEIQLNGHV 691 F +++ G Sbjct: 464 FLVRIVGQA 472
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 32.4 bits (73), Expect = 0.002 Identities = 15/35 (42%), Positives = 23/35 (65%) Query: 151 CIGPVLGAILGVAASRETVGSGAGLLAIYSLGLAI 185 CIG VLGA+L + + V +G LA+ ++GLA+ Sbjct: 316 CIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAV 350
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 29.6 bits (66), Expect = 0.032 Identities = 41/173 (23%), Positives = 58/173 (33%), Gaps = 17/173 (9%) Query: 246 SMLELDASAFSAGAASTADWQQGLLTPLQRTATWLKQQGAARLIVQGSYRLSAGFALGWS 305 S L LD + G A+ QG + LQR A + G+ G A+ Sbjct: 226 SELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGA---VPGGAVPGG 282 Query: 306 FRSATGFDIDIVTRDGVWATDDRPQADATYAQWDVSDPQLAA------GDVLTVSIGILR 359 F W D + AQ V P+L A G +TVS G L Sbjct: 283 FG-----PGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVSGGSLS 337 Query: 360 DPFGDLVASGIPAEKI-QRFHLSVPVTSAKEMQAIVGQLKRHVSDLAAKLQIK 411 P G+++ +G Q LS+ + + Q L V KL + Sbjct: 338 APHGNVIETGGARRFAPQAAPLSITLQAGAHAQG--KALLYRVLPEPVKLTLT 388
>AEROLYSIN#Aerolysin signature. Length = 493 Score = 29.2 bits (65), Expect = 0.035 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 9/56 (16%) Query: 73 VIGTSAAGHGFAGNVGHGEAVRIFTGAPVPPGADS-VLLQEDAEKIEGGIRTNFPV 127 + G +A FAGN I GAPVP ADS V + G+R P+ Sbjct: 423 ITGDFSAESQFAGN--------IEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPL 470
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.3 bits (224), Expect = 5e-23 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Query: 6 HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFLEANAVDLIVLDIMMPGDDGLV 65 IL+ DDD IR +++ L + G + ++ + ++ A DL+V D++MP ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 66 LCRELRAGRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAVRELLARIKAVLRRAR 125 L ++ +P+L+++A+ M I E GA DYL KPF + EL+ I L + Sbjct: 65 LLPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 126 MLPPNLQ 132 P L+ Sbjct: 124 RRPSKLE 130
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 89.0 bits (220), Expect = 3e-20 Identities = 50/319 (15%), Positives = 91/319 (28%), Gaps = 24/319 (7%) Query: 64 KKRRQKEEAPAEQAPAAEQPKEAPAGKPKAERKEAPAPEPKAEPEPPKAEAPKEEPAPKA 123 +KR Q + P Q A P P PP PAP Sbjct: 986 EKRNQTVDTTNITTPNNIQ-----ADVPSVPSNNEEIARVDEAPVPP--------PAPAT 1032 Query: 124 ESK-PERKAKQAAQPEAEPQQEEQQPVTQEKPKKPKKQQAEQAEPEAQPEPEQQPAAKQA 182 S+ E A+ + Q ++ EQ + ++ A++A+ + + A+ Sbjct: 1033 PSETTETVAENSKQESKTVEKNEQDA---TETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 183 QPEAEQAQPEVKPEGSKREKGQDKAQSRDKGKAKTETAAPEAVTPTEEQAKPAVEPEAKP 242 E E K + ++ + K ++ + T+ E +P EP + Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 243 AAEAPAKKPKKGEAAAPAVKPAEDKAAAPEATPAEAPTEGTAAKPAAKQPAGEQPVAKQP 302 K E + A+ + A E + + E P P Sbjct: 1150 DPTVNIK-----EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTP 1204 Query: 303 AGEQPGGEQPAAKQPAAPATDTAQPAPDTSGGQQVEQALPAPEKVSPEELQRRKAIAADP 362 A QP ++ +P + + P V+ +L A Sbjct: 1205 ATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS--NDRSTVALCDLTSTNTNAVLS 1262 Query: 363 AKSNETVVLPVENGAAVLD 381 + + + G AV Sbjct: 1263 DARAKAQFVALNVGKAVSQ 1281 Score = 78.2 bits (192), Expect = 8e-17 Identities = 39/242 (16%), Positives = 77/242 (31%), Gaps = 16/242 (6%) Query: 21 ALQPASAMVAARGSAPEAAAARQIEQGSFE-VAQDAPSEEELLKKKRRQKEEAPAEQAPA 79 ++ + +A AP A + E VA+++ E + ++K + E A+ Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 80 AEQPKEAPAGKPK-------------AERKEAPAPEPKAEPEPPKAEAPK--EEPAPKAE 124 A++ K + + E + E K E K E P ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 125 SKPERKAKQAAQPEAEPQQEEQQPVTQEKPKKPKKQQAEQAEPEAQPEPEQQPAAKQAQP 184 P+++ + QP+AEP +E V ++P+ A+ +P + + ++ Sbjct: 1129 VSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 185 EAEQAQPEVKPEGSKREKGQDKAQSRDKGKAKTETAAPEAVTPTEEQAKPAVEPEAKPAA 244 PE + Q S K K P + + A Sbjct: 1189 VNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Query: 245 EA 246 Sbjct: 1249 LC 1250 Score = 68.2 bits (166), Expect = 9e-14 Identities = 60/315 (19%), Positives = 92/315 (29%), Gaps = 47/315 (14%) Query: 137 PEAEPQQEEQQPVTQEKPKKPKKQQAEQ----------AEPEAQPEPEQQPA--AKQAQP 184 PE E + Q V P QA+ A + P P PA ++ + Sbjct: 983 PEVE---KRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039 Query: 185 EAEQAQPEVKPEGSKREKGQD-KAQSRDKGKAKTETAAPEAVTPTEEQAKPAVEPEAKPA 243 AE ++ E K + + AQ+R+ K A T+ E K Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKE----AKSNVKANTQTNEVAQSGSETKET 1095 Query: 244 AEAPAKKPKKGEAAAPAVKPAEDKAAAPEATPAEAPTEGTAAKPAAKQPAGEQPVAKQPA 303 K+ E E+KA E P + P +Q QP A+ Sbjct: 1096 QTTETKETATVE--------KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 304 GEQPGGEQPAAKQPAAPATDTAQPAPDTSGGQQVEQALPAPEKVSPEELQRRKAIAADPA 363 P + DT QPA +TS + + ++ +P Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETS-------SNVEQPVTESTTVNTGNSVVENPE 1200 Query: 364 KSNETVVLPVENGAAVLDSDKDADRSKGRESRRDRDKLRAESQEVKVPT-SDADAQAAAA 422 + P N S + R R +R+ V+ T S D A Sbjct: 1201 NTTPATTQPTVNSE-----------SSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Query: 423 AAAPAIKLEAVTSEK 437 + AV S+ Sbjct: 1250 CDLTSTNTNAVLSDA 1264 Score = 63.5 bits (154), Expect = 2e-12 Identities = 35/218 (16%), Positives = 62/218 (28%), Gaps = 10/218 (4%) Query: 23 QPASAMVAARGSAPEAAAARQIEQGSFEVAQDAPSEEELLKKKRRQK------EEAPAEQ 76 R A EA + + + EVAQ +E + ++ E+A E Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 77 APAAEQPKEAPAGKPKAERKEAPAPEPKAEPEPPKAEAPKEEPAPKAESKPERKAKQAAQ 136 E PK PK E+ E P+ + E KE + + + + Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS 1176 Query: 137 PEAEPQQEEQQPV--TQEKPKKPKKQQAEQAEPEAQPEPEQQPAAKQAQPEAEQAQPEVK 194 E E V + P+ +P E +P + + ++ P Sbjct: 1177 SNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHR--RSVRSVPHNV 1234 Query: 195 PEGSKREKGQDKAQSRDKGKAKTETAAPEAVTPTEEQA 232 + + D T +A + A Sbjct: 1235 EPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVA 1272 Score = 30.8 bits (69), Expect = 0.027 Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 2/196 (1%) Query: 314 AKQPAAPATDTAQPAPDTSGGQQVEQALPAPEKVSPEELQRRKAIAADPAKSNETVVLPV 373 A P+ P+ + D + A P+ + E ++++ + + + T Sbjct: 1005 ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064 Query: 374 ENGAAVLD-SDKDADRSKGRESRRDRDKLRAESQEVKVPTSDADAQAAAAAAAPAIKLEA 432 A S+ A+ ++ + ++ E K + + A ++ Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 433 VTSE-KGTRLDTRPQFARPEGARIDDQTDDNRLIIQYNNQVIVRSDDDRRFVRDGERPIY 491 VTS+ + + + E AR +D T + + N + + E+P+ Sbjct: 1125 VTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVT 1184 Query: 492 EELPDNRYRETITRPE 507 E N + PE Sbjct: 1185 ESTTVNTGNSVVENPE 1200
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 26.2 bits (57), Expect = 0.021 Identities = 6/18 (33%), Positives = 9/18 (50%) Query: 64 SVRYVHRKLISATEWRAL 81 SV ++R S +W A Sbjct: 301 SVHQINRGDFSKQDWEAQ 318
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 27.9 bits (62), Expect = 0.049 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 19/118 (16%) Query: 112 TILVALAACLAMIQANLLLSTYGKTFSYFTQMDVLRFPLGVLTGV-GFIGGGAILRRGDT 170 I +A ++M+ ++ + S V+ FP + + G+IGG + RRG Sbjct: 267 IIFGTVAGFVSMV-PYMMKDVHQ--LSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPL 323 Query: 171 MT---------------GVTTAATMWFMTVVGLCFGGGQMLTGTAATAVAFIVLSPMK 213 T WFMT++ + GG T T + + L + Sbjct: 324 YVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQE 381
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 689 bits (1779), Expect = 0.0 Identities = 210/1035 (20%), Positives = 424/1035 (40%), Gaps = 52/1035 (5%) Query: 1 MAGGIYALRSLPLDAIPDLSDVQVIVYTEYPGQAPQVVEDQVTYPLTTSMLTVPKSKVVR 60 M G A+ LP+ P ++ V V YPG Q V+D VT + +M + + Sbjct: 20 MMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMS 79 Query: 61 GFSF-FGVSFVYVIFDDGTDPYWARSRVLEYLNAASSRLPQGV-TPTLGPDATGVGWVYQ 118 S G + + F GTDP A+ +V L A+ LPQ V + + + ++ Sbjct: 80 STSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMV 139 Query: 119 YAVVA--KELSLAELRSLQDWIVRFGVSKSEGVAEVASVGGFVKQYSIVVDPARLKSQGV 176 V+ + ++ V+ +S+ GV +V G I +D L + Sbjct: 140 AGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA-QYAMRIWLDADLLNKYKL 198 Query: 177 SLNDVANAVRASNIDVGGRTVELS------EFEFMVRGRGYLKGIPDIENIVLK-SQNGV 229 + DV N ++ N + + + + + + K + + L+ + +G Sbjct: 199 TPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGS 258 Query: 230 PLKLGDMAKVELVPDERRGVTELNGEGEVASGIVLQRFGANALTVIDNAKKSLESVKGSL 289 ++L D+A+VEL + + +NG+ A + GANAL K L ++ Sbjct: 259 VVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANALDTAKAIKAKLAELQPFF 317 Query: 290 PAGTEIVPVYDRSTLIEAAIETLKGTLVEESIVVALVTIAFLLHVRSALVAIVMLPVGIL 349 P G +++ YD + ++ +I + TL E ++V LV FL ++R+ L+ + +PV +L Sbjct: 318 PQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLL 377 Query: 350 IAFIAMRLLGLGANIMSLGGIAIAIGAMIDAAIVMIENAHKHLERAPPDKLRTEILVEAA 409 F + G N +++ G+ +AIG ++D AIV++EN + + E ++ Sbjct: 378 GTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPK--EATEKSM 435 Query: 410 SEVGPPLFFSLLIITVSFLPIFTLESQEGRLFGPLAFTKTFSMAAAALLSVMLVPALMVV 469 S++ L ++++ F+P+ G ++ + T +MA + L++++L PAL Sbjct: 436 SQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495 Query: 470 FVRGHIVPEQKNP------VNRVLIWL---YRPAISGVLKVKSLTILAAVAILAATVWPA 520 ++ +N N Y ++ +L +L I+A V Sbjct: 496 LLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLF 555 Query: 521 HHIGSEFMPNLDEGTLMYMPTTLPGISVTKAAELM-QTQDRIIKS-FPEVESVFGKVGRA 578 + S F+P D+G + M G + + +++ Q D +K+ VESVF G + Sbjct: 556 LRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFS 615 Query: 579 LTATDPAPTEMFETIITLKPKSQWRPRVTTESLKQEMDAALQFPGVSNAWTMPIRARIDM 638 + F ++LKP + R + A ++ + + + +P Sbjct: 616 FSGQAQNAGMAF---VSLKPWEE-RNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAI- 670 Query: 639 LSTGIRTPVG---VKVYGTDLGEMENIARQIEGVLKTVSGT-SSAYAERVIGGYYLDIVP 694 + G T + G + Q+ G+ + S + + Sbjct: 671 VELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEV 730 Query: 695 DRTALGRYGLTVSDIQDVVGMALGSEVVTSTVEGRERYGVAIRYPRAFRSDPQAIARDVQ 754 D+ G+++SDI + ALG V ++ + ++ FR P+ + + + Sbjct: 731 DQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDK-LY 789 Query: 755 VSLPGGGTVPLGEVADVRLTRGATTIRTENGQLAVYTFVDIANRDLGGYVAEARQAVSKS 814 V G VP G+ + NG ++ + A G +A + Sbjct: 790 VRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENL 846 Query: 815 VKLLP-GYSVAWSGQFEYLQRAEARLAIVVPLTLALIFLLLYLNFKALTETMIVMLSLPF 873 LP G W+G + + + +V ++ ++FL L +++ + + VML +P Sbjct: 847 ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPL 906 Query: 874 ALVGGIWLMWWMGFNASVAVAVGFIALAGVAAETGVIMLIYLEHALKEQREACEKEDRPF 933 +VG + V VG + G++A+ ++++ + + ++++ Sbjct: 907 GIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKE----------- 955 Query: 934 SKLDLNRAIMVGAVERVRPKMMTVVAIMAGLVPILWRTGTGSEIMQRIAVPMIGGMVSST 993 + A ++ R+RP +MT +A + G++P+ G GS + + ++GGMVS+T Sbjct: 956 -GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014 Query: 994 LLTLIVIPAVYALVK 1008 LL + +P + +++ Sbjct: 1015 LLAIFFVPVFFVVIR 1029 Score = 82.2 bits (203), Expect = 6e-18 Identities = 99/501 (19%), Positives = 181/501 (36%), Gaps = 47/501 (9%) Query: 1 MAGGIYALRSLPLDAIPDLSDVQVIVYTEYPGQAP----QVVEDQVT-YPLTTSMLTVPK 55 +AG + LP +P+ + + P A Q V DQVT Y L V Sbjct: 548 VAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVES 607 Query: 56 SKVVRGFSF------FGVSFVYV-IFDDGTDPYWARSRVLEYLNAASSRLPQGVT-PTLG 107 V GFSF G++FV + +++ + V+ ++ G P Sbjct: 608 VFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNM 667 Query: 108 PDATGVGWVYQYAVVAKELSLAELRSLQDWIVRFGVSKSEGVAEVASV----GGFVKQYS 163 P +G + + + +L + ++ A + SV Q+ Sbjct: 668 PAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFK 727 Query: 164 IVVDPARLKSQGVSLNDVANAVRASNIDVGGRTV-----ELSEFEFMVRG-RGYLKGIPD 217 + VD + ++ GVSL+D+ + + +GG V + V+ + D Sbjct: 728 LEVDQEKAQALGVSLSDINQTISTA---LGGTYVNDFIDRGRVKKLYVQADAKFRMLPED 784 Query: 218 IENIVLKSQNGVPLKLGDMAKVELVPDERR-----GVTELNGEGEVASGIVLQRFGANAL 272 ++ + ++S NG + V R G+ + +GE A G +A+ Sbjct: 785 VDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSS----GDAM 840 Query: 273 TVIDNAKKSLESVKGSLPAGTEIVPVYDRSTLIEAAIETLKGTLVEESIVVALVTIAFLL 332 +++N L PAG + + E LV S VV + +A L Sbjct: 841 ALMENLASKL-------PAGIGYD--WTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 333 H-VRSALVAIVMLPVGILIAFIAMRLLGLGANIMSLGGIAIAIGAMIDAAIVMIENAHKH 391 + ++++P+GI+ +A L ++ + G+ IG AI+++E A Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 392 LERAPPDKLRTEILVEAASEVGPPLFFSLLIITVSFLPIFTLESQEGRLFGPLAFTKTFS 451 +E+ K E + A P+ + L + LP+ + Sbjct: 952 MEKE--GKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 452 MAAAALLSVMLVPALMVVFVR 472 M +A LL++ VP VV R Sbjct: 1010 MVSATLLAIFFVPVFFVVIRR 1030
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 28.5 bits (63), Expect = 0.014 Identities = 12/53 (22%), Positives = 19/53 (35%) Query: 45 RMTPQNLAAHRDDPNFAFWKNLKEGYDIFEVRRREPRVAACSRKYIFDAEFKD 97 ++ NL N + G+ I +R P + S FDA K+ Sbjct: 63 KLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKE 115
>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature. Length = 591 Score = 27.4 bits (60), Expect = 0.014 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 12 MMLLGSLAASCIAGPADHGHAAPVFVSVPATSEGHHRS-DGRSISGTHCQQDG 63 + LLG AA+ ++ P H A V T G H + +G + +G Sbjct: 168 LHLLGKTAAARLSDPQAASHTAQWLVEESVTPAGEHIYYSYLAENGDNVDLNG 220
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.7 bits (64), Expect = 0.001 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 29 SAAIEQPSARPVAFRSPISGYVARQPVDPKPWRRQNDLQSPAKG 72 + +E P+ P+A GY+ R P D PW L +P + Sbjct: 74 ESLVEAPTLPPLAANYNKEGYIKRLPAD--PWGNDYVLVNPGEH 115
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 5e-10 Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 11/139 (7%) Query: 180 VVAPDIATVFSKYEGRIVAVEVEVGDRVAAGQVLLRLDDAGARF---ALRGAYIAGRAAE 236 + + + + V+ G+ V G VLL+L GA + + + R + Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 237 LVLEA------RNIALVQARTSLDRAERLAGRDAMSADALEVTRTAFDTAGNAAAQARQD 290 + N + ++ + + +L + F T N Q + Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLI--KEQFSTWQNQKYQKELN 208 Query: 291 LEKAKLDIDRAREQMEALT 309 L+K + + ++ Sbjct: 209 LDKKRAERLTVLARINRYE 227 Score = 40.2 bits (94), Expect = 1e-05 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 285 AQARQDLEKAKLDIDRAREQMEALTVRAPVSGTVTRLDARVGDTVLSREDSVRENESLLA 344 Q ++ L++ + E+ +A +RAPVS V +L V V E+L+ Sbjct: 305 RQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGV------VTTAETLMV 358 Query: 345 IT-DTASLVIDADVAEANMALLRPGLKGEAVLDGFP 379 I + +L + A V ++ + G ++ FP Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFP 394
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 49.0 bits (117), Expect = 8e-09 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Query: 1 MRVFVTGATGWVGSAVVKELIAAGHQVLGL---------ARSDKGAAELAAAGAEVQRGT 51 M+ VTGA G++G V K L+ AGHQV+G+ + LA G + + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 LNDLEGLKRGAA--EADGVIHTA 72 L D EG+ A + V + Sbjct: 61 LADREGMTDLFASGHFERVFISP 83
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 65.8 bits (160), Expect = 1e-12 Identities = 34/71 (47%), Positives = 39/71 (54%) Query: 1122 GNSVDNPTGGTGDDVLYGGGGNDMMFGLGGDDTLFGQDGNDTLNGGVGNNTLTGGVGDDT 1181 + D G G+D LYG GND + G GDD L+G DGND L G GNN L GG GDD Sbjct: 743 ADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDE 802 Query: 1182 FFFQKFTTTTN 1192 F Q + N Sbjct: 803 FQVQGNSLAKN 813
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 27.1 bits (60), Expect = 0.031 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 12/89 (13%) Query: 54 AFRATNERGKIR--FSLSRNATFNRLRIA----FPCD-EEFRRKHIKVGSSEIGHGLDNG 106 ++A + +GK + +A R + P +E R K GS+ GL Sbjct: 5 HYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGST----GLSLR 60 Query: 107 SGHLVTKPDDALLS-NLATILGAAIRIER 134 ++ D ALL+ LAT++ A++ +E Sbjct: 61 RKIRLSTSDLALLTRQLATLVAASMPLEE 89
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.023 Identities = 29/135 (21%), Positives = 41/135 (30%), Gaps = 21/135 (15%) Query: 99 DYGARIVNAFDKRCFIAASPLLGSTNTKGEYWTLLANKLIGSGQNDSV--ILAPLAYGGS 156 D GAR+VN T T+ LI + I AP Sbjct: 538 DDGARLVN---------------HNMTNASNITITGESLITDPNTITPYNIDAPDEDNPY 582 Query: 157 EVARWAAGGDLNPVLVDTMKQLQDSGYRITSVLWVQGEAD----LVMGTTSEAYQKHFMS 212 R GG L L + G S L L MG TS+ +++ M+ Sbjct: 583 AFRRIKDGGQLYLNLENYTYYALRKGASTRSELPKNSGESNENWLYMGKTSDEAKRNVMN 642 Query: 213 MVDTLRQHGVEAPVY 227 ++ R +G Sbjct: 643 HINNERMNGFNGYFG 657
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.8 bits (165), Expect = 4e-15 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 1/171 (0%) Query: 5 LENAVVVITGASSGIGQATAEAFARRGSRLVLAARNGEALEKVAETCRGLGAEAISVVTD 64 +E + ITGA+ GIG+A A A +G+ + N E LEKV + + A + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 65 VTEPAAVRALADK-AKTLGDVDVWVSNVGVGAIGRFEETPIEAHEQIIRTNLLGHMNDAH 123 V + AA+ + + + +G +D+ V+ GV G E E N G N + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 124 AVLPIFLKQGRGVFINMISLGGFAAAPFAAAYSASKFGLRGFSEALRPEVA 174 +V + + G + + S AAY++SK F++ L E+A Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.015 Identities = 7/25 (28%), Positives = 16/25 (64%) Query: 137 VTGVSSAIERLASTVGAAGAGALIG 161 +T +S+ + ++S + AA +L+G Sbjct: 368 LTTISTVLASVSSGISAAATTSLVG 392
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 63.0 bits (153), Expect = 2e-13 Identities = 61/253 (24%), Positives = 93/253 (36%), Gaps = 35/253 (13%) Query: 47 PKRIASISYFADDVALALGIKPVASTYMTKGR----EPDFLLGLTSGMKQIGQRAKPNLE 102 P RI ++ + ++ LALGI P R EP L + +G R +PNLE Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEP----PLPDSVIDVGLRTEPNLE 90 Query: 103 LLSEAKPDLIIAIRRYTAGNAAQLQNIAPYVAYNMEL----LEESYSETAALSKLLGRPE 158 LL+E KP ++ Y + L IAP +N L + ++ LL Sbjct: 91 LLTEMKPSFMVWSAGYGP-SPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQS 149 Query: 159 RGEQLNADFRKHLAEFAAKAPKD----------VHPRFMIMWGGATPFAFHTENTSASIV 208 E A + + + K + PR M+++G F I Sbjct: 150 AAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFG--PNSLFQEILDEYGIP 207 Query: 209 AAIGGD-NVPGPKTPGGEFGIDLSLETMLEKDPEVI-FVYDSGPDRPH-ESNPIWSQLSA 265 A G+ N G ID L KD +V+ F +D+ D + P+W + Sbjct: 208 NAWQGETNFWGSTA----VSID-RLAAY--KDVDVLCFDHDNSKDMDALMATPLWQAMPF 260 Query: 266 VKNNRVFYVGDQW 278 V+ R V W Sbjct: 261 VRAGRFQRVPAVW 273
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 69.7 bits (170), Expect = 4e-17 Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 11/188 (5%) Query: 7 TSDKILDIAQSLIVAGGYNGFSYADIADAIGIRKASIHHHFPTKAELVSVLVDRYTKQA- 65 T ILD+A L G + S +IA A G+ + +I+ HF K++L S + + Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 66 AAGLQSLREQAASPADQLQFYID-YWRSCIENAAQP-FCVCAMLASEMQMLPDEVASRVR 123 L+ + P L+ + S + + E V R Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQR 131 Query: 124 AHFRNLAAWLTSVLQAGVEQGLFRLDR-PEDQAQMLMASVHGAMLSA-------RALGEP 175 + L+ +E + D A ++ + G M + E Sbjct: 132 NLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEA 191 Query: 176 GLFIAVVG 183 ++A++ Sbjct: 192 RDYVAILL 199
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 37.5 bits (87), Expect = 5e-05 Identities = 36/187 (19%), Positives = 54/187 (28%), Gaps = 58/187 (31%) Query: 95 FISSASVY---EKPPRHYVITEETPAINPYWPYSQAKIACEELLKKYDNLAWTIVRPSHT 151 + SS+SVY K P + + +P Y+ K A E + Y +L Sbjct: 123 YASSSSVYGLNRKMP----FSTDDSVDHPVSLYAATKKANELMAHTYSHL---------- 168 Query: 152 IRTGLPIM----------MGDSDIMA-----RRMLDGDPILVAGDG-------------- 182 GLP G D MA + ML+G I V G Sbjct: 169 --YGLPATGLRFFTVYGPWGRPD-MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAE 225 Query: 183 ------HTPWTLTRSVDFAVPFVGLFGKEAALKEIFHITSDRAHLWNDIQKTIGRLLGVE 236 A +++I + D + + LG+E Sbjct: 226 AIIRLQDVIPHADTQWTVETGTPAA---SIAPYRVYNIGNSSPVELMDYIQALEDALGIE 282 Query: 237 AKIVHVP 243 AK +P Sbjct: 283 AKKNMLP 289
>BCTERIALGSPG#Bacterial general secretion pathway protein G signature. Length = 145 Score = 28.7 bits (64), Expect = 0.016 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Query: 72 RRSFTLALMVMVVTVVVSLLAGL 94 +R FTL L +MVV V++ +LA L Sbjct: 7 QRGFTL-LEIMVVIVIIGVLASL 28
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 146 bits (369), Expect = 5e-46 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 11/167 (6%) Query: 1 MFVIIQAHEYQKHAAVLDQMFRLRKKVFADQLGWDVPVIGPYERDSYDALSPAYLVWCND 60 M I + ++F LRK+ F D+L W V E D YD + YL D Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGMEFDQYDNNNTTYLFGIKD 60 Query: 61 SRTRLYGGMRLMPTTGPTLLYDVFRETFPAAADLVAPGIWEGTRMCIDEEAIARDFPNID 120 + + +R + T P ++ F F ++ E +R +D+ A+D + Sbjct: 61 N--TVICSLRFIETKYPNMITGTFFPYF-KEINIPEGNYLESSRFFVDKSR-AKDI-LGN 115 Query: 121 AGRAFSMMLLALCECALDHG---IHTMISNYEPYLKRVYKRAGAEVE 164 SM+ L++ + D G I+T++S+ P L + KR+G + Sbjct: 116 EYPISSMLFLSMINYSKDKGYDGIYTIVSH--PML-TILKRSGWGIR 159
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.1 bits (156), Expect = 1e-14 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%) Query: 64 VLIVEDEPLIRFNILDVLEDVGHVALEAASADEALVVLKGRQDVDILFTDVNMAGSMDGI 123 +L+ +D+ IR + L G+ ++A + D D++ TDV M + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIA-AGDGDLVVTDVVMPD-ENAF 63 Query: 124 QLARRVRAMRPNIGIIITSGMVRLD--PLALPANA-AFLPKP 162 L R++ RP++ +++ S A A +LPKP Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105
>SECA#SecA protein signature. Length = 901 Score = 24.4 bits (53), Expect = 0.043 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 9/58 (15%) Query: 4 KEYFSLLSDEEIFERCTAISEELTQGKKIELDHLCARLGISVETALALATEHASRLHG 61 + LSDEE+ + L +G+ L++L A A+ E + R+ G Sbjct: 32 EPEMEKLSDEELKGKTAEFRARLEKGE--VLENLIPE-------AFAVVREASKRVFG 80
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 48.4 bits (115), Expect = 4e-09 Identities = 47/204 (23%), Positives = 69/204 (33%), Gaps = 19/204 (9%) Query: 8 TFLALVATSAFAADAVQDVPAAPVAAAPAFTWSGPYLGIDGGASWLNGDFSAGGASDSQD 67 T +A+ A A Q AAP TW Y G G S + + + Sbjct: 4 TAIAIAVALAGFATVAQ---AAPKDN----TW---YTGAKLGWSQYHDTGFINNNGPTHE 53 Query: 68 FNGGVFGAFAGYNFQFDNNIVVGIE--GNLEYNWNEEEALGADVGTDWAGAVRGRVGYAF 125 N GAF GY +G + G + Y + E G + + Sbjct: 54 -NQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDL 112 Query: 126 DRALLYGAAGWTATRGYVDLPGSDKETETFNGYTVGAGVDFAITNNIFARGEYRY-NDFG 184 D +Y G R K +T GV++AIT I R EY++ N+ G Sbjct: 113 D---IYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIG 169 Query: 185 EKDILGVDVDLNQHELKFGIGVKF 208 + +G D L G+ +F Sbjct: 170 DAHTIGTRPD--NGMLSLGVSYRF 191
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 28.8 bits (64), Expect = 0.021 Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 26/163 (15%) Query: 49 PDMAIVNLAVVKQAKTAREALDENNKAMNDVLKALK---DGGIAERDLQTSGFSIQPQYN 105 PD + N A ++Q ++ + L D L+ L+ DG I + F Q N Sbjct: 287 PDTGLPNSASIEQIQSKIQEL-------GDTLEELRDSFDGYIN------NAFVNQIHLN 333 Query: 106 YPQPVD-------GQQQQPQLIGYQTINSVTVR-LRDLSKLGQVIDQSVTLGINQGGDIQ 157 + P GQQQQ Q + + + VR L ++ Q+ V L + G I+ Sbjct: 334 FVMPPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKDLVKLQRHAG--IR 391 Query: 158 FTNDKPEAAFEEARKNAVAEAVKKAKTLSEAAGVKLGRILEIN 200 +K A EE KN K+ + SE + + E + Sbjct: 392 KAMEKLAAQQEEDAKNQGKGDCKQQQGASEKSKEGKVKETEFD 434
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 359 bits (922), Expect = e-122 Identities = 93/429 (21%), Positives = 172/429 (40%), Gaps = 7/429 (1%) Query: 8 SKRSLNRHVAVVGALSIALVCGIGGWAATTELSSAVIGEGVVVVDGDVKKIQHLTGGIVS 67 S+R ++G L IA + + ++ G + G K+I+ + IV Sbjct: 54 SRRPRLVAYFIMGFLVIAFI-----LSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVK 108 Query: 68 ELLVSENQHVSAGQVLIRLDGTATRAQLSIVESTLAQLYARRARLKAERIGAES--FEVE 125 E++V E + V G VL++L A +S+L Q + R + E Sbjct: 109 EIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPEL 168 Query: 126 ENLSDLTSSTAAQQLLDGERKLFDSRRSALIGMKSQLASRKDQLGEQIKGLVVQINATGD 185 + + +++ + L + S K Q D+ + ++ +IN + Sbjct: 169 KLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYEN 228 Query: 186 SLGLIEQELEAVDVLYKKGLVTLQRLNTLKRARADLQGNSGQEIAAKAEAEGKAIEIDRQ 245 + + L+ L K + + + + + + E + + + Sbjct: 229 LSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEE 288 Query: 246 SIQLDEDRRSEIAKDLTDVEAQIAENEERRGTALDQLRRLDITAPLSGRVHELSVHTVNG 305 + + ++EI L I ++ + I AP+S +V +L VHT G Sbjct: 289 YQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGG 348 Query: 306 VIEAGQTLGLVVPENDDLTVQAKVATRDIDQVHVGQSVDVRFSAFDQRTTPDVQAVITSI 365 V+ +TL ++VPE+D L V A V +DI ++VGQ+ ++ AF + + +I Sbjct: 349 VVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNI 408 Query: 366 APDIVKDERTGISYYPLRVKPEAQSIAKLKSIKLYPGMPAEVFIKIGDRTVISYLTKPLT 425 D ++D+R G+ + + E K+I L GM IK G R+VISYL PL Sbjct: 409 NLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLE 468 Query: 426 DQMQHVFRE 434 + + RE Sbjct: 469 ESVTESLRE 477
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.3 bits (128), Expect = 5e-10 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 237 VLGATRAARIALQLDDKRIAAGIPAADALREAVVSQQEEMVEAEKAALLRALSRAGGNVS 296 L ++A ++ +P + + E E +L AL+ GN Sbjct: 401 SLSISQAVEENMRQYFASFGDALPPSGLYDRV-------LAEMEYPLILAALTATRGNQI 453 Query: 297 QAAIALGISRATLHRKMKKLDL 318 +AA LG++R TL +K+++L + Sbjct: 454 KAADLLGLNRNTLRKKIRELGV 475
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 79.7 bits (196), Expect = 5e-20 Identities = 61/239 (25%), Positives = 96/239 (40%), Gaps = 18/239 (7%) Query: 5 KAVIVTGAGGNLGSAVVRELAGAGVKLVCMNRSSQELETLAGELPASTEFLSIAGTDLTD 64 K +TGA +G AV R LA G + ++ + ++LE + L A D+ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 YASCAAAVARAVKRFGGVGALVNTVGGFQMGPVGPEAPAQWDTMMTANARTALTISAAVL 124 A+ AR + G + LVN G + G + + +W+ + N+ S +V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 125 PTMKASGYGRIVHVAAMPGLKAGPNQAAYAASKAAVIRLTEALAAECRDDRITANCILPG 184 M G IV V + P + AAYA+SKAA + T+ L E + I N + PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 185 TIDTPENRAAMPNAKTDAWV------------------SPQSIARLIAFLISPAAAVVT 225 + +T + + V P IA + FL+S A +T Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 27.0 bits (59), Expect = 0.014 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 11 PGHLNVRIETRPTHLAYLDKLNAEGKLSMAGPFLDDEGKACGSLVLVKAETAQEAKAL 68 P H V P Y++KL +G L EG + ++K E A +A L Sbjct: 251 PDHRTVLELYAPDMFEYMNKLE-KGGFEKISESLKKEGVEKDRIDVLKGEKALKASGL 307
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 29.9 bits (67), Expect = 0.025 Identities = 10/32 (31%), Positives = 13/32 (40%) Query: 404 VSDKWLPVSPVTGRIDAFEWKAPFGQIEGPLE 435 V + W V + R+ E F QI P E Sbjct: 164 VRESWTQVIDLRPRLGQIETNPQFAQIVPPSE 195
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 72/359 (20%), Positives = 143/359 (39%), Gaps = 25/359 (6%) Query: 51 IYLGLIGLVQFLPSLLLILVTGSVADRHNRRAIAALCSLVSALCTLALLVMTATDTFAPW 110 I L L L+QF + +L G+++DR RR + L SL A + +M W Sbjct: 47 ILLALYALMQFACAPVL----GALSDRFGRRPVL-LVSLAGA--AVDYAIMATAPFL--W 97 Query: 111 PVFAVLLIFGIERAFMSPAVQSLAPNLVPEHALSNAIAWNSSSWQLAAITGPVIGGLLYG 170 ++ ++ GI A + ++ + + S+ + + GPV+GGL+ G Sbjct: 98 VLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG 156 Query: 171 VSATTAYTVAVIFSILGAGL-LFMIPKPEQKTVGEAKSWAM-ILGGFSFIRGEKVVLGAI 228 S + A + L F++P+ + + A+ L F + RG VV + Sbjct: 157 FSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALM 216 Query: 229 SLDLFAVLLGGA-TALMPIFARDILTLGPWGLGLLRAAPG-LGAIVMAIFLAAYPLKHRA 286 ++ L+G AL IF D +G+ AA G L ++ A+ + Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 287 GIYMFIGVALFGLGTIIFGVSTNTEVSIAALALMGAADMVSVYVRESLIALWTPDHLRGR 346 + +G+ G G I+ +T ++ + L+ + + + +++++ + +G+ Sbjct: 277 RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPAL-QAMLSRQVDEERQGQ 335 Query: 347 VNAVNMVFVGASNELGEFRAGTMASIFGAVPAVVIG---GIGTLVVATIWASSFPKLRR 402 + ++ +G +F A+ A I G + A ++ P LRR Sbjct: 336 LQGSLAALTSLTSIVGPL-------LFTAIYAASITTWNGWAWIAGAALYLLCLPALRR 387
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 40.2 bits (94), Expect = 8e-06 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 134 GAVPIINENDTVATSEIRYGDNDRLAARVATMTGADLLILLSDIDGLYTAPPHLDPNATF 193 G VP+I E+ + E D D ++A AD+ ++L+D++G L Sbjct: 195 GGVPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAA-----LYYGTEK 248 Query: 194 LETISEITPEIEAMAGGAASELSRGGMRTKIDAG-KIATTSGCAMIIAS 241 + + E+ E E G M K+ A + G IIA Sbjct: 249 EQWLREVKVE-ELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH 296
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 29.8 bits (67), Expect = 0.004 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Query: 4 GLFGGSFNPPHEGHALVAEIAIKRLGLDQLWWMVTPGNPLKSRNLLAPLAERIAESERVA 63 ++ GSF+P GH + E + DQ++ V NP ++ + + ER+ + + Sbjct: 3 AIYPGSFDPITFGHLDIIERGCRL--FDQVYVAVL-RNP--NKQPMFSVQERLEQIAKAI 57 Query: 64 AD-PRIKVTAFEQALGVSYTANTLARVKAR 92 A P +V +FE L V+Y A R Sbjct: 58 AHLPNAQVDSFE-GLTVNYARQRQAGAILR 86
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.4 bits (94), Expect = 1e-05 Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 21/269 (7%) Query: 18 STSPFSVRAQDAAPEAAQSSNPPPAEAPLPDPAAELAAKRDETRAE-LEALSKTISLSSD 76 T+P +++A + + EAP+P PA ++ ET AE + SKT+ + Sbjct: 997 ITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQ 1056 Query: 77 KVSELQQSISNLEKSTQSVRQALIDSAARRKGLEKQILESEKKLADLGVKEDGIRRSLHE 136 +E ++ + ++A + A + E SE K ++ E Sbjct: 1057 DATE------TTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 137 RRGLLAEVLAALQRMGRNPPPALLVTPDDALASVRSAILLGAVVPGIRKETDKLAADLAS 196 + + E + ++ P + V P + Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSE--------------TVQPQAEPARENDPTVNIK 1156 Query: 197 LAALQTASAAEKARLTATMTDSIEEERRMDLLLAENDKLSRSSAAELQAEKKRSEELAGK 256 QT + A+ + + ++E+ + + + + A + + Sbjct: 1157 EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216 Query: 257 ATSLEGLVASMESEIASVREAAAAARQAE 285 S+ S +V A ++ Sbjct: 1217 NKPKNRHRRSVRSVPHNVEPATTSSNDRS 1245
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 28.7 bits (64), Expect = 0.007 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 8/93 (8%) Query: 62 HADRLVARIIFLEGHPN--------LQTLAPLRIGQNVKEVLEADLAGEYDARTAYKKSR 113 D + R++ + G P ++ + E+++A + + K Sbjct: 60 TVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVNDYKQISSESKFVI 119 Query: 114 DICYEAGDYVSMKLFEELLADEEGHIDFLETQL 146 + E D + LF L+ + E + L + L Sbjct: 120 GLAEENQDNATADLFVGLIEEVEKQVWMLSSYL 152
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 30.1 bits (68), Expect = 0.022 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 53 APSIVCSGKLNNAMRLTALDELAERLGLKKEQGVAEARAMYPTLEVVEEDPAADRRLLEA 112 P + + ++AE G+ Q + ARA+Y V P +EA Sbjct: 280 LPLVTFKYTDAQVQTVR---KIAEEEGVPILQRIPLARALYWDALVDHYIP---AEQIEA 333 Query: 113 IA 114 A Sbjct: 334 TA 335
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 105 bits (264), Expect = 5e-29 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Query: 21 ASLLIVDDDGPFLRRLARAMETRGFQVETAESVAEGVAKSKGRPPKYAVVDLRLGDGNGL 80 A++L+ DDD L +A+ G+ V + A V D+ + D N Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 81 DVIEAIRQRRDDTRIIVLTGYGNIATAVTAVKLGAVDYLAKPADADDVFSALTQRPGEKA 140 D++ I++ R D ++V++ TA+ A + GA DYL KP D ++ + R + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL-IGIIGRALAEP 122 Query: 141 ELPENPMSADRVR 153 + + + D Sbjct: 123 KRRPSKLEDDSQD 135 Score = 36.3 bits (84), Expect = 4e-05 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 1/95 (1%) Query: 95 IIVLTGYGNIATAVTAVKLGAVDYLAKPADADDVFSALTQRPGEKAELPE-NPMSADRVR 153 II I + L+ ++ G+ + Sbjct: 378 IIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEME 437 Query: 154 WEHIQRVYEMCERNVSETARRLNMHRRTLQRILAK 188 + I N + A L ++R TL++ + + Sbjct: 438 YPLILAALTATRGNQIKAADLLGLNRNTLRKKIRE 472
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 34.7 bits (79), Expect = 8e-04 Identities = 23/170 (13%), Positives = 62/170 (36%), Gaps = 21/170 (12%) Query: 245 ERELKDDDRFREDVMLLRSQSERCRDILRRLTTLSSEGEAHMRRLPLSSMIEEI----VA 300 E + D + +++ E+ +D + L E + ++++I + Sbjct: 36 EHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLE 95 Query: 301 PHREFG-----ITLELIEKSPRKSEPVIDRNAGIMYGLGNLIENAVDYARE----KVTIT 351 + E G ++L+E + ++N+ G + + ++ K+ I Sbjct: 96 IYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPKLIIN 155 Query: 352 VEH---DQDKVLIVIEDDGNGYSPDILTRIGEPY-----VTKRQKEDTAG 393 ++ + ++ V + G G S DI+++ + K +D+ Sbjct: 156 IKDYAINSEQSKEVYYEIGKGISLDIISKDKSLDPEFLNLIKSLSDDSDS 205
>SECA#SecA protein signature. Length = 901 Score = 31.4 bits (71), Expect = 0.005 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Query: 41 EVPNEESATLLLMPAWVPGRYAGVKTVSVFPGNVRRGLPAIFGTYLLSSGATGEMLAAVD 100 + E L+ A+ R A + + +V+ + G +L+ EM + Sbjct: 53 RLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQ-----LLGGMVLNERCIAEMRTG-E 106 Query: 101 GGELTARRTAAASALAAR---------YLARPDAEEM 128 G LTA A +AL + YLA+ DAE Sbjct: 107 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENN 143
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 180 bits (459), Expect = 2e-56 Identities = 76/335 (22%), Positives = 131/335 (39%), Gaps = 37/335 (11%) Query: 26 LVNGGAGFLGSHLCERLLLRGHSVICLDNFSTG-----RRANVEHLTSHPHFRIIEHD-- 78 LV G AGF+G H+ +RLL GH V+ +DN + ++A +E L + P F+ + D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELL-AQPGFQFHKIDLA 62 Query: 79 ----VRQPF-DIEASLIFNFASPASPPDYQRDPVGTLLTNVLGAVNTLDCARKTG-AIVV 132 + F +F + +P +N+ G +N L+ R ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 133 QSSTSEVYGDPTQSPQRESYCGNVNSIGPRACYDEGKRSAETLFFDYHRTYGVDIKVGRI 192 +S+S VYG + P +V+ P + Y K++ E + Y YG+ R Sbjct: 123 YASSSSVYGLNRKMPFSTD--DSVDH--PVSLYAATKKANELMAHTYSHLYGLPATGLRF 178 Query: 193 FNTYGPRMRLDDGRVVSNFIVQALRNTDLTIYGDGQQTRSFCYVDDLVEGFLRFS----- 247 F YGP R D + F L + +Y G+ R F Y+DD+ E +R Sbjct: 179 FTVYGPWGRPD--MALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPH 236 Query: 248 ------------AAGSTCHGPINLGNPGEFTVRRLAEIIRDLTNSRSRIVHLPAVVDDPR 295 AA + N+GN + + + D ++ LP D Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVL 296 Query: 296 QRRPDISRAMTELGWQPQIELEAGLARTVEYFDGL 330 + D +G+ P+ ++ G+ V ++ Sbjct: 297 ETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 171 bits (435), Expect = 5e-53 Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 42/327 (12%) Query: 5 ILVTGGAGFIGSHICKALARAGMIPVTYDNLSTGHADSVRWGPL----------IRGELG 54 LVTG AGFIG H+ K L AG V DNL+ + S++ L + +L Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 55 DAMALRRTMAEFSPDCVIHCGANAYVGESVEMPRKYYRNNVVGSLTLLEACLDQEIDKIV 114 D + A + V V S+E P Y +N+ G L +LE C +I ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 115 FSSSCATYGVPASLPIREESP-QQPVNPYGRTKLIFEMALEDFAAAYGICFAALRYFNAA 173 ++SS + YG+ +P + PV+ Y TK E+ ++ YG+ LR+F Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVY 182 Query: 174 GADPEGELAERHEPETHLIPRALLAAAGRLERLDIFGTDYSTADGTCVRDYIHVSDLAQA 233 G P G R + +A+L + +D++ G RD+ ++ D+A+A Sbjct: 183 G--PWG----RPDMALFKFTKAMLEG----KSIDVYN------YGKMKRDFTYIDDIAEA 226 Query: 234 HLAAVNHLM---------AGGDSLS------VNLGSGRGTSVREILEAIYRTTGHEVPVR 278 + + + G + S N+G+ + + ++A+ G E Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKN 286 Query: 279 YRSRRAGDPPILFANTARAKAELGFAP 305 + GD A+T +GF P Sbjct: 287 MLPLQPGDVLETSADTKALYEVIGFTP 313
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 46.3 bits (110), Expect = 1e-08 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 21/160 (13%) Query: 2 IAAAVFVILPLCLAMAAFSDLFTMTIPNRISLILVVSFLALAPFFG-LGLQAIGTHLAAG 60 ++L L F DL M +P++++L L+ L G + L AG Sbjct: 132 WGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAG 191 Query: 61 AIVFAACFALFAF----NVMGGGDAKLLTATALWFGLNESLLFLMTDVAIIGGLLTLLIL 116 +V + + F MG GD KLL A W G ++L ++ +++G + + ++ Sbjct: 192 YLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGW-QALPIVLLLSSLVGAFMGIGLI 250 Query: 117 LVRGQSNTILAIGLPVPNSLLLAKKIPYGIAIAIGGFMAF 156 L+R +K IP+G +AI G++A Sbjct: 251 LLRNHH---------------QSKPIPFGPYLAIAGWIAL 275
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 113 bits (284), Expect = 8e-29 Identities = 68/317 (21%), Positives = 125/317 (39%), Gaps = 40/317 (12%) Query: 169 AADLAQVFLKGGE--ATTRTETASGTGGDSSVALFAEGRQTSQVV--------NLLQIQG 218 A+DL +V + + D ++ + A G+ + +V +L ++ Sbjct: 279 ASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIA 338 Query: 219 E-----DQVTLKVTITEVRREVLKQLGFDNLVSNSSGMTVAQLGSPNADSATATVG---- 269 + QV ++ I EV+ LG N+ G P + + Sbjct: 339 QLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKD 398 Query: 270 GGLAALFKSSIGKY----------DISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSG 319 G +++ S++ + + + L AL + LA P++ + ATFN G Sbjct: 399 GTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVG 458 Query: 320 GQQLY---STTDNNGNV--TVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEP------V 368 + S T + N+ TV GI L KP + + LEI+ VS Sbjct: 459 QEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASST 518 Query: 369 AGSGNATYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGF 428 + AT+ R+ +V + SG ++ + GL+ +VS T P + IP++G LFR Sbjct: 519 SSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSK 578 Query: 429 ERQETELVIIATPYLVR 445 + + L++ P ++R Sbjct: 579 KVSKRNLMLFIRPTVIR 595
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-04 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 2/114 (1%) Query: 67 TSGGIAAAANMFAAAPTPNLIILETKANSGSLLGELAPLAAVCDPSTKVVIVGYYNDIGL 126 + A AA +L++ + + L + P V+++ N Sbjct: 32 ITSNAATLWRWIAAGD-GDLVVTDVVMPDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMT 89 Query: 127 YRELIRNGISEYMVQPVAMPDILTAMASIFVDPEAEPLGRSIAFIGSKGGTGAS 180 + G +Y+ +P + +++ + +P+ P G S Sbjct: 90 AIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRS 143
>PERTACTIN#Pertactin signature. Length = 922 Score = 31.2 bits (70), Expect = 0.010 Identities = 16/47 (34%), Positives = 20/47 (42%) Query: 15 GAIAPPPPPPAAAPVASSPAVLVEPSREPSRQQVTPPPMQAPQRKRP 61 GA APP P PA P +P + P Q PP + P+ P Sbjct: 564 GAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAP 610
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 34.9 bits (80), Expect = 2e-04 Identities = 21/108 (19%), Positives = 35/108 (32%) Query: 96 AVMQQVAIANPGDRNVLAAYGKAQAAAGQFQQALDTIGRAQTPDRPDWRLISAEGAILDQ 155 + + + L + Q +G+++ A D D R GA Sbjct: 23 GTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 156 MGRASEARQRYRDALDIQPNEPSILSNLGMSYVLTGDLRTAETYLHSA 203 MG+ A Y + EP + + G+L AE+ L A Sbjct: 83 MGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLA 130
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.2 bits (135), Expect = 4e-12 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 1 MRVSRAQAEANRETVINVASRLFREHGFDGIGLKDLMKGAGLTQGGFYKQFRSKDDL--- 57 R ++ +A+ R+ +++VA RLF + G L ++ K AG+T+G Y F+ K DL Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 58 -AALASGRAMESAIRRWSRVAAGSSDPFGAVVGMYLSTGHQEE 99 L+ E + ++ ++ L + EE Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEE 104
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.1 bits (86), Expect = 1e-04 Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 6/102 (5%) Query: 77 GKIMQRYVDVGVQVKAGQPLMRIDETDLRLALTAKRNAVAAAQAVLIQAQADERRYAALV 136 + + V G V+ G L+++ ++++ A+ + Q R Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNK 164 Query: 137 KNGLAATPQRY------EQAKAALDTATAQLAAAEADAKVAE 172 L + Y E+ Q + + E Sbjct: 165 LPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Score = 36.0 bits (83), Expect = 2e-04 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 12/107 (11%) Query: 112 RNAVAAAQAVLIQAQADERRYAA---LVKNGLAATPQRYEQAKA--------ALDTATAQ 160 ++AV + ++A + R Y + +++ + + + Y+ L T Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 161 LAAAEADAKVAENETAYSILVADTDGTVVE-TLGEPGQVVTAGQTVV 206 + + E S++ A V + + G VVT +T++ Sbjct: 311 IGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLM 357
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 422 bits (1086), Expect = e-133 Identities = 226/1045 (21%), Positives = 423/1045 (40%), Gaps = 61/1045 (5%) Query: 5 LSALAVRERAVTLFFIILLAAAGAYAFVKLGRAEDPSFTIKTLTVTTVWPGATAREMQDL 64 ++ +R I+L AGA A ++L A+ P+ ++V+ +PGA A+ +QD Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 VAEPLEKRLQELNWYDRVE-TTTRPGYAFLTVTLKDSTPSTAVEEEFYQARKKLGDEARN 123 V + +E+ + ++ + T+ G +T+T + T + Q + KL Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTD---PDIAQVQVQNKLQLATPL 117 Query: 124 LPQGVFGPFVNDEYSDVSFGLYAL---KAKGMPMRELVRQAE-VIRQDLLHVPGVKKINI 179 LPQ V ++ E S S+ + A G ++ ++ L + GV + + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 180 LGERPEQIFVEFSYAKLATLGISAQDVAAALQRRNTVTPAGSIDTRGP------QVFIRF 233 G + + + L ++ DV L+ +N AG + I Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 234 DGAYDSIQAISDTPIVAA--GRTLKLSDLAEVRRGYEDPATYLIRHDGEPAIMLGAVMQQ 291 + + + + G ++L D+A V G E+ + R +G+PA LG + Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENY-NVIARINGKPAAGLGIKLAT 295 Query: 292 GWNGLELGKALEERSAAIAKTLPLGMTLAKVSDQAVNIQEAVGEFMLKFAMALGVVLFVS 351 G N L+ KA++ + A + P GM + D +Q ++ E + A+ +V V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 352 LVSLG-WRVGIVVALAVPLTLAVVFLIMLETGRFFDRITLGALILALGLLVDDAIIAIE- 409 + L R ++ +AVP+ L F I+ G + +T+ ++LA+GLLVDDAI+ +E Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 410 VMVVKMEEGMDRIKAAAYAWSHTAAPMLSGTLVTIIGLMPVGFARSTAGEYAGNIFWVVG 469 V V ME+ + +A + S ++ +V +P+ F + G + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 470 FALIVSWIVAVIFTPYLGVKMLPAIKPVEGGHHA-----------IYDTPNYRRLRGMIE 518 A+ +S +VA+I TP L +L KPV HH +D + + Sbjct: 476 SAMALSVLVALILTPALCATLL---KPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 519 FTVRHKFVTCAVVAIVMAVSVVGMGAVKQQFFPTSDRPEVLVEVRMPEGTSIETTAATVG 578 + + A+++A VV + F P D+ L +++P G + E T + Sbjct: 533 I-LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 579 KLEDWLQQQPEAKTVTSYTGQGAPRFFFAMAPELPDPSFAKIVVLTP----DAHTREALK 634 ++ D+ + +A + +T G F+ + + + A V L P + A Sbjct: 592 QVTDYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMA-FVSLKPWEERNGDENSAEA 645 Query: 635 LRLRAAISDGLAPEAYVRV----TQLVFGPYTPFPVE-FRIMGPDADQLYRISEKALEIM 689 + RA + G + +V + G T F E G D L + + L + Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMA 705 Query: 690 KSVP-DVRQANRDWGNRTPVLRFVPDQERLGLIGLSPAEAAQQMQLLLSGIPITEVRENI 748 P + + T + DQE+ +G+S ++ Q + L G + + + Sbjct: 706 AQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRG 765 Query: 749 RNVPVVARSAGDNRLDPSRLADFSLMSRDGRQVPLDQIGHSEIRFEEPILKRRDRTPVVT 808 R + ++ R+ P + + S +G VP S + P L+R + P + Sbjct: 766 RVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSME 825 Query: 809 IRSDIDEATQPPEVSQQVMKALQPLIATLPVGYRIEMGGNIEESLKANDALVKIFPAMIA 868 I+ + P S M ++ L + LP G + G + + + + Sbjct: 826 IQGEA----APGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFV 881 Query: 869 AMLIVIVLQVRSLSTMTMVMLTGPLGLAGAVPVLLLFNQPFGFNAILGLIGLAGILMRNT 928 + + + S S VML PLG+ G + LFNQ ++GL+ G+ +N Sbjct: 882 VVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNA 941 Query: 929 LILTEQIKENKAA-GLDDYHAVIEATVQRTRPVILTALAAVLAFIPLTHSVFWGS----- 982 +++ E K+ G A + A R RP+++T+LA +L +PL S GS Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 983 MAYTLIGGTAVGTVMILLFLPALYA 1007 + ++GG T++ + F+P + Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFV 1026 Score = 72.6 bits (178), Expect = 5e-15 Identities = 90/532 (16%), Positives = 190/532 (35%), Gaps = 50/532 (9%) Query: 516 MIEFTVRHKFVTCAVVAIVMAVSVVGMGAVKQQFFPTSDRPEVLVEVRMPEGTSIETTAA 575 M F +R + I+M + + + +PT P V V P G +T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQD 59 Query: 576 TVGK-LEDWLQQQPEAKTVTSYTGQGAPRFFFAMAPELPDPSFAKIVVLTPDAHTREALK 634 TV + +E + ++S + DP A++ V + L+ Sbjct: 60 TVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQV-------QNKLQ 112 Query: 635 LRLRAAISDGLAPEAYVRVTQLVFGPYTPFPVEFRIMGPDADQLYRISEKALEIMK---- 690 L + V + + F P Q IS+ +K Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSYLMV----AGFVSDNPGTTQDD-ISDYVASNVKDTLS 167 Query: 691 SVPDVRQANRDWGNRTPVLRFVPDQERLGLIGLSPAE-----AAQQMQLLLSGIPITE-V 744 + V +R D + L L+P + Q Q+ + T + Sbjct: 168 RLNGVGDVQLFGAQY--AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPAL 225 Query: 745 RENIRNVPVVARSAGDNRLDPSRLADFSLMSRDGRQVPLDQIGHSEIRFEE-PILKRRDR 803 N ++A++ N + ++ ++ DG V L + E+ E ++ R + Sbjct: 226 PGQQLNASIIAQTRFKNPEEFGKVT--LRVNSDGSVVRLKDVARVELGGENYNVIARING 283 Query: 804 TPVVTIRSDIDEATQPPEVSQQVMKALQPLIATLPVGYRIE----MGGNIEESLKANDAL 859 P + + + ++ + L L P G ++ ++ S+ ++ + Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSI--HEVV 341 Query: 860 VKIFPAMIAAMLIVIVLQVRSLSTMTMVMLTGPLGLAGAVPVLLLFNQPFGFNAILGLIG 919 +F A++ L++ + ++++ + + P+ L G +L F + N L + G Sbjct: 342 KTLFEAIMLVFLVMYLF-LQNMRATLIPTIAVPVVLLGTFAILAAFG--YSIN-TLTMFG 397 Query: 920 LA---GILMRNTLILTEQI-KENKAAGLDDYHAVIEATVQRTRPVILTALAAVLAFIPL- 974 + G+L+ + +++ E + + L A ++ Q ++ A+ FIP+ Sbjct: 398 MVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMA 457 Query: 975 ----THSVFWGSMAYTLIGGTAVGTVMILLFLPALYATWFRIKPAKNESHEN 1022 + + + T++ A+ ++ L+ PAL AT +KP E HEN Sbjct: 458 FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL--LKPVSAEHHEN 507
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.1 bits (236), Expect = 2e-25 Identities = 61/186 (32%), Positives = 85/186 (45%), Gaps = 8/186 (4%) Query: 5 KVVVITGASSGIGEASARLLAQNGFEVFGGVRNPQRANAIPGVRYGT--------VDVTD 56 K+ ITGA+ GIGEA AR LA G + NP++ + DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 57 DASVANFVEWVFSEAGKIDILINNAGVSLVGPVENTSPSEALAVFDTNVFGPLRMIRAAL 116 A++ + E G IDIL+N AGV G + + S E A F N G R+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 117 PSMRAARSGLIINISSVLGFLPAPFMGIYASSKHALEGLSESLDHEIREFNVRVVLLEPT 176 M RSG I+ + S +P M YASSK A ++ L E+ E+N+R ++ P Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 177 FTNTKL 182 T T + Sbjct: 189 STETDM 194
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 26.4 bits (58), Expect = 0.016 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 59 DFTDQYGRQVEETYIIQPD 77 DF Y +Q E+ I+ PD Sbjct: 33 DFVTWYSKQTGESVIVSPD 51
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 9e-07 Identities = 72/312 (23%), Positives = 111/312 (35%), Gaps = 50/312 (16%) Query: 53 VVFAVYAFALLAALLTAGSISDHLGRRPVIFFALLLEIIAMALFVVATGPGWLIAARIVQ 112 ++ A+YA A G++SD GRRPV+ +L + A+ A L RIV Sbjct: 47 ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVA 106 Query: 113 GIATGIAGASLGAALVDV----DRAKGQIVNSIAPLCGMAVGAVGTSALIQFGP-SPMHL 167 GI TG GA GA + D+ +RA+ S GM G V + F P +P Sbjct: 107 GI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFA 165 Query: 168 TYALLLIAFTLQAGGIWLTHETAGRRPGALGSLIPRVAIPPQVKRPLSLVTPINIANWTL 227 AL + F G +L E+ + R A+ P + + + Sbjct: 166 AAALNGLNFLT---GCFLLPESHKGE----RRPLRREALNPLAS--FRWARGMTVVAALM 216 Query: 228 AGFYLSLVPSLVASTTGSRAPLTGGAVVTALMVSGAITVYIRRSKTASANLGFGVSAKTL 287 A F++ L G ++ G F A T+ Sbjct: 217 AVFFI--------------MQLVGQVPAALWVIFGEDR--------------FHWDATTI 248 Query: 288 GILTVVAGVHLANVPLLLIGTVFTGAGFGTNFLGSIGTIMPLAKADERAGLLAAFYVQSY 347 GI G+ + ++ G V LG +M AD +L AF + + Sbjct: 249 GISLAAFGILHSLAQAMITGPV-------AARLGERRALMLGMIADGTGYILLAFATRGW 301 Query: 348 LAFSLPAILAGF 359 +AF + +LA Sbjct: 302 MAFPIMVLLASG 313
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 52.3 bits (125), Expect = 1e-10 Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 15/156 (9%) Query: 27 RPGGRSARVQASVHKAARDLLAEFNRTEVTIPLIAARAGVTPSTIYRRWGDLQELLADVA 86 + + + + A L ++ + ++ IA AGVT IY + D +L +++ Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 87 VERLRPDMQPVDAGSGKADLQAWA------EQYAEEMSSGPGREMIRDVL---AAQAGAN 137 + K + E + R ++ +++ G Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 138 AS------KCCEYTRQQIVVIADRAKARGEAFPDVD 167 A C + +I D+ Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLM 159
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.7 bits (129), Expect = 3e-09 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%) Query: 1044 KILCIDNEPKILEGMRLLLSGWGCEVTAVDCLAEVIAMDGRDGPPDLAIADYHLDDGTGL 1103 IL D++ I + LS G +V A + G DL + D + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRW-IAAGDGDLVVTDVVMPDENAF 63 Query: 1104 AAILHLRRQFGIDIPALLVTADRTPEVRSEAERYGI 1139 + +++ D+P L+++A T +A G Sbjct: 64 DLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGA 98
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 128 bits (324), Expect = 2e-41 Identities = 62/142 (43%), Positives = 85/142 (59%), Gaps = 12/142 (8%) Query: 1 MLNEFKAFIARGNVMDLAVGVIIGGAFGGIVKSLVDDLIMPIVGAIFGGFDFSNYFLPLS 60 ++ EF+ F RGNV+DLAVGVIIG AFG IV SLV D+IMP +G + GG DF + + L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLR 62 Query: 61 SAVNAPTLAAARAQGAVFAYGSFLTVLINFLILAWIIFLMVKAVNYLRQQVERQEKQEPE 120 A V YG F+ + +FLI+A+ IF+ +K +N L ++K+EP Sbjct: 63 -------DAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL-----NRKKEEPA 110 Query: 121 QLPPPPADVQLLTEIRDLLAKR 142 P P + LLTEIRDLL ++ Sbjct: 111 AAPAPTKEEVLLTEIRDLLKEQ 132
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 156 bits (395), Expect = 6e-47 Identities = 78/345 (22%), Positives = 143/345 (41%), Gaps = 43/345 (12%) Query: 1 MAVLVTGGAGYIGSHMVWALIDAGEDVVVLDRLSTGF-------RWAVA--PAARFYLGD 51 M LVTG AG+IG H+ L++AG VV +D L+ + R + P +F+ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 IADPDILKKIFIENDIEAIIHFAGSAVVPVSVADPLSYYDNNSGKTRALLSASIRAGIRN 111 +AD + + +F E + V S+ +P +Y D+N +L I++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 FVFSSTAAVYGQQQTDLPVKETAPLN-PENPYGQSKLMTELMLRDAAAAYDFNYVALRYF 170 +++S+++VYG + +P ++ P + Y +K ELM + Y LR+F Sbjct: 121 LLYASSSSVYGLNRK-MPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 171 NVAGADPHQRTGQSTSGATHLVKVACEAALGKRDSVHVYGIDYPTHDGTGVRDYIHVTDL 230 V G P R + T + + S+ VY G RD+ ++ D+ Sbjct: 180 TVYG--PWGRPDMALFKFTKAML--------EGKSIDVYN------YGKMKRDFTYIDDI 223 Query: 231 ADAHLKALQHLRRDKGPL---------------VANCGYGSGYSVLDVLNMVTRLHGHSF 275 A+A ++ + V N G S ++D + + G Sbjct: 224 AEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283 Query: 276 KIHMAPRRAGDSASVVADASLARQILDWKPRYDSLETIVQSSLDW 320 K +M P + GD AD +++ + P +++ V++ ++W Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPET-TVKDGVKNFVNW 327
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 2e-21 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 7 ILIIDDNIDDREVYRRILGRVSSTAYTVLEAETGEEGLALNSRKRPNCILLDYSLPGRDG 66 IL+ DD+ R V + L R Y V + + ++ D +P + Sbjct: 6 ILVADDDAAIRTVLNQALSRA---GYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 67 LGVLADLLEDDPAANVIMLTGQGSETVAVEVMKSGARDYLTKDSLSPETLHRCIQNAIMH 126 +L + + P V++++ Q + A++ + GA DYL K L I A+ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK-PFDLTELIGIIGRALAE 121 Query: 127 --GMLEAQLEQKRQSLEIFTRAMAHDLKEPLRTIKSFSR 163 + + + + R+ A ++E R + + Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAA--MQEIYRVLARLMQ 158 Score = 62.9 bits (153), Expect = 1e-12 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 12/125 (9%) Query: 386 AEVLLVEDSPADIQILKIKLMRREKVTFNLHVATNGREAMRLLEERADIADVPQIDLMLL 445 A +L+ +D A +L L R +++ + +N R + DL++ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG---YDVRITSNAATLWRWIAAG-------DGDLVVT 53 Query: 446 DINMPIMDGFEVLNALSADARLKRIPVCILSTSSDETDMQRARNLGARAYMVKPPTLQQL 505 D+ MP + F++L + +PV ++S + +A GA Y+ KP L +L Sbjct: 54 DVVMPDENAFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111 Query: 506 EEALE 510 + Sbjct: 112 IGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 8e-15 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 9 ILIVEDSEDDFEATMRAFKRTNLRNSIRWAASGQEALDMLASMAPKPGLILLDLNMPGLD 68 IL+ +D +A R I ++ +A+ L++ D+ MP + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRI--TSNAATLWRWIAAGDG--DLVVTDVVMPDEN 61 Query: 69 GRKTLQAIKSNDGWRKIPVVILTTSDDERDIEGCYALGANTYVQKPVDLDGLFAAIQR 126 L IK +PV++++ + GA Y+ KP DL L I R Sbjct: 62 AFDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.1 bits (130), Expect = 1e-11 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 10/123 (8%) Query: 2 PTIVYVDDSRDDLFYLDYIRKKQQIDVDLFCFSTAETALEALKQRVAEGWAPPELLVADL 61 TI+ DD L+ + DV S A T + +L+V D+ Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAA------GDGDLVVTDV 55 Query: 62 YMPLDSGIGLVSRLRGDDRFRTMRLAICSGSDADEDRARAFEAGADLYLEKPLDLAAILL 121 MP ++ L+ R++ + + + S + +A E GA YL KP DL ++ Sbjct: 56 VMPDENAFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113 Query: 122 NLE 124 + Sbjct: 114 IIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 4e-05 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 10 AVKILFVDDEFIEFRALKKKIADLSEPAVEVEYSPSIGDALEKVRAARFDLILLDNRLLP 69 IL DD+ L + ++ + + A DL++ D +P Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITS---NAATLWRWIAAGDGDLVVTDVV-MP 58 Query: 70 NADFRETVPELRGIGFTGPIGVVS 93 + + + +P ++ P+ V+S Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMS 82
>PF06580#Sensor histidine kinase Length = 349 Score = 35.6 bits (82), Expect = 1e-04 Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 19/106 (17%) Query: 135 LVLRQLISNALTY---RSSSPPHVAIAAEQEGANWFIRISDNGMGIDPAYRERIFEPFWK 191 ++++ L+ N + + + + + ++ + + + G +E Sbjct: 258 MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE-------- 309 Query: 192 LPKTGAAPGAGLGLTTAQELLKALGGDISLEHSDETGSRFTIRLQL 237 G GL +E L+ L G + E + + + Sbjct: 310 --------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 314 bits (806), Expect = e-102 Identities = 121/311 (38%), Positives = 190/311 (61%), Gaps = 12/311 (3%) Query: 527 FSPYDKHIQFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTKEAADLA 586 P + F + ++ + ++ IASV+L + GLN+G+DF+GG + ++ A D+ Sbjct: 7 LVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTESTTAIDVG 66 Query: 587 KFREGLDSLGLGEITLQTFGD------NKSILVRAQRQEGGEEAQTAA------VTKLKA 634 +R L+ L LG++ + D ++R Q QE G+ A+ V K++ Sbjct: 67 VYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQELVNKVET 126 Query: 635 EVAKIDPSATVEGTDVIGPKVSGELASAGILSVVIASFAMLIYIWVRFEWPFAVGAIVTL 694 + +DP+ + + +GPKVSGEL + S++ A+ ++ YIWVRFEW FA+GA+V L Sbjct: 127 ALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVAL 186 Query: 695 VLDVTKAIGFFAITGLDFNLTAIAAILTLVGYSVNDKVVVYDRMRENMRLYKSMPLREII 754 V DV +G FA+ L F+LT +AA+LT+ GYS+ND VVV+DR+REN+ YK+MPLR+++ Sbjct: 187 VHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVM 246 Query: 755 DKSINETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILL 814 + S+NETL+R++ T T LALVPM IWGG + F MV+G+ SS+++A I+L Sbjct: 247 NLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVYVAKNIVL 306 Query: 815 FLGDWRRRHAK 825 F+G R + K Sbjct: 307 FIGLDRNKEKK 317 Score = 73.3 bits (180), Expect = 5e-16 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 7/227 (3%) Query: 277 RFAEITRQNVGNPFAIVLDDKVLSAPVIREPITGGSGQISGNFSADSATTLAAMLRAGAL 336 ++ V +P + ++E G GQ G + + L A Sbjct: 76 ELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQ--GAQGQELVNKVETALTAVDP 133 Query: 337 PAKLTVIEERTVGADLGADAIKMGIYSGIVGFILVAAFIFVLYG-TWGILANVALLIHTI 395 K+T E +VG + + + ++S + +++ +I+V + + + A VAL+ + Sbjct: 134 ALKITSFE--SVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHDVL 191 Query: 396 LTFSALTLVGATLTLPGIAGVVLGIGLAVDANVLINERIREETRKGKGAFAA--IDTGFN 453 LT ++ L +A ++ G +++ V++ +R+RE K K ++ N Sbjct: 192 LTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKYKTMPLRDVMNLSVN 251 Query: 454 RAYSTIIDGNMTALIAAAILFWFGSGPVRGFAVTMALGLIISMFTSV 500 S + MT L+A + +G +RGF M G+ ++SV Sbjct: 252 ETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSV 298
>BACINVASINC#Salmonella/Shigella invasin protein C signature. Length = 409 Score = 26.4 bits (57), Expect = 0.043 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Query: 34 NLVISPAAALNNTLSSSGRDPQPQQLTARDAVRGVLAADRKLAPKQAAYDAG-SPALAAP 92 N+ I+PAA LNN + Q ++A+D + + + K++ D G SP L+AP Sbjct: 5 NVGINPAAYLNNHSVENSSQTASQSVSAKDILNSIGISSSKVS------DLGLSPTLSAP 58
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.0 bits (226), Expect = 8e-25 Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 4 KVLTVDDSRTIRNMLLVTLNNAGFDTIQAEDGVEGLEVLEESNPDVIVTDINMPRLDGFG 63 +L DD IR +L L+ AG+D + + + D++VTD+ MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIER 118 + ++ + +P+LV++ ++ +A + GA ++ KPFD +LI I R Sbjct: 65 LLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 4e-05 Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 51/133 (38%) Query: 477 IRNAVDHGIETPEKRAAAGKNTEGTVRLTAKHRSGRILIELADDGAGINREKVRQKAIDN 536 + N + HGI G + L +G + +E+ + G+ + Sbjct: 264 VENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKN--------- 306 Query: 537 DLIPADANLSDEEIDNLIFLPGFSTADKISDISGRGVGMDVVKRSIQALGG---RINITS 593 G G+ V+ +Q L G +I ++ Sbjct: 307 ------------------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSE 336 Query: 594 KPGHGSVFTMSLP 606 K G + + +P Sbjct: 337 KQGKVNA-MVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 64.9 bits (158), Expect = 1e-13 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 1 MSAPARVLVVDDSPTMRGLITAVLSSDPEVSVIGQAGDALEAREAIKRLNPDVVTLDIEM 60 M+ A +LV DD +R ++ LS +A I + D+V D+ M Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVR--ITSNAATLWRWIAAGDGDLVVTDVVM 57 Query: 61 PNMNGLDFLEKIMTLRP-MPVIMVSTMTHRGAEATLAALEIGAFDCVGKP 109 P+ N D L +I RP +PV+++S + A E GA+D + KP Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMS--AQNTFMTAIKASEKGAYDYLPKP 105
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 2e-23 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 6 KIKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGMKIMTEQPHHLVISDFNMPKMD 65 +L+ DD R +L+ AL++ G+ + + + + LV++D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GIGFLQAVRT-NPNTKKAAFIILTAQGDRALVQRAAQLGANNVLAKPFTIEKMKAAIEAV 124 L ++ P+ ++++AQ +A++ GA + L KPF + ++ I Sbjct: 62 AFDLLPRIKKARPDLP---VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 125 FGALK 129 K Sbjct: 119 LAEPK 123
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 387 bits (994), Expect = e-130 Identities = 139/581 (23%), Positives = 239/581 (41%), Gaps = 70/581 (12%) Query: 13 NFGALGRTRLMILGGVGSVSIAIILAAALFVNKPAQETLYVGLDAPDLNQISMALAEANI 72 L + L GS ++AI++A L+ P TL+ L D I L + NI Sbjct: 15 WLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNI 74 Query: 73 NFQVGTDGSSITVPAGMTGKARLMLAERGLPNSANAGYELFDNVGSLGLTSFMQEVTRVR 132 ++ +I VPA + RL LA++GLP G+EL D G++ F ++V R Sbjct: 75 PYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQ-EKFGISQFSEQVNYQR 133 Query: 133 ALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIR--ASAATGRSAATSI 190 ALEGE+ARTI+++ + +ARVH+ MP+ F + ++ P+ASV + A +++ Sbjct: 134 ALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAV 193 Query: 191 RHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQEVESNIDKALA 250 HLV+SAV GL +VT++D +G LL + + + L +V+ ++ I+ L+ Sbjct: 194 VHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILS 253 Query: 251 PFLGMDNFRSSVTADLNTDAQQIQETVYDPESKVERSVRSTKEAQQSQQRQSDNATTV-- 308 P +G N + VTA L+ ++ E Y P ++ +++ S+Q + V Sbjct: 254 PIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPG 313 Query: 309 -----------------------EQNIPQAAPDAGGSGGPESQDKSDKREEQTNYEINSK 345 QN PQ + + +S +R E +NYE++ Sbjct: 314 ALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGP---RSTQRNETSNYEVDRT 370 Query: 346 TTATTRNSYQVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMHKIVASAAGIDAKRG 405 T N +E+LS+AVVVN +A P + ++ + A G KRG Sbjct: 371 IRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLT----ADQMKQIEDLTREAMGFSDKRG 426 Query: 406 DVVTVTAMDF--LENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLV 463 D + V F ++N E L L + VA+++ +RP + Sbjct: 427 DTLNVVNSPFSAVDNTGGELP---FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQL 483 Query: 464 RSVSGNGSSSVLGDATPEAAGLELPDFAPAAGAAGGALMDGFGSDFGFDSTEDLLSLGDD 523 AA + ++ E LS + Sbjct: 484 TRRVEEA---------------------KAAQEQAQVRQE------TEEAVEVRLSKDEQ 516 Query: 524 --DGNFNRRVK-EGPERKLARMVEINEERAAKILRKWAIDD 561 N+R+ E +++ M + + A ++R+W +D Sbjct: 517 LQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSND 557
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 343 bits (881), Expect = e-119 Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 9/353 (2%) Query: 21 DSKTEAPTAKKQTDAAEKGNVPFSRELSIFATILATYIYLVFFLPDSVGRMSETLRDIFE 80 KTE PT KK DA +KG V S+E+ A I+A L+ S+ + E Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 81 Q---PDQWKIETGPDVLSLFVRLGWAIAALLAPAFILFMVFGIASSVFQNLPTPVLERIR 137 Q P + D + L L P + + IAS V Q E I+ Sbjct: 63 QSYLPFSQALSYVVDNVLLEFFY------LCFPLLTVAALMAIASHVVQYGFLISGEAIK 116 Query: 138 PQASRISPAKGWGRLFSLPGLIEFGKSLFKVVVVGLILFFVLRSEYFSSIDAMFSDPQTI 197 P +I+P +G R+FS+ L+EF KS+ KVV++ ++++ +++ + + + I Sbjct: 117 PDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECI 176 Query: 198 LVRISTAMRKIVIVVLIATAIVAIADVFWTRHHWFTELKMTRHEIKEENKQAQGDPFVKS 257 + +R+++++ + +++IAD + + + ELKM++ EIK E K+ +G P +KS Sbjct: 177 TPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKS 236 Query: 258 RQRSLMRDRARRRMIANVHRATLVIANPTHYAVALRYAREENDAPVVLAKGQDLIALKIR 317 ++R ++ R M NV R+++V+ANPTH A+ + Y R E P+V K D +R Sbjct: 237 KRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVR 296 Query: 318 EIAEQNGIPVFEDPPLARSMFAQVSVDSVIPSVFYKAVAELIHRVYAADAKNK 370 +IAE+ G+P+ + PLAR+++ VD IP+ +A AE++ + + + + Sbjct: 297 KIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQ 349
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 282 bits (724), Expect = 6e-96 Identities = 74/331 (22%), Positives = 161/331 (48%), Gaps = 6/331 (1%) Query: 14 KPLTQAEKAAAVLLAMGKGVAGRLLKYFTQAELQTIIASAQSLRAIPPDELLSLVSEFED 73 LT +KAA +L+++G ++ ++ KY +Q E++++ L I + +++ EF++ Sbjct: 13 SALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKE 72 Query: 74 LFTEGAGLMDNAK-AIEAILEEGLTPDEVDSLLGRRTAFQAYETSIWDRLSEAEPAFVAQ 132 L + +LE+ L + ++ + A ++ ++ + A+PA + Sbjct: 73 LMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGS--ALQSRPFEFVRRADPANILN 130 Query: 133 FLLREHPQTVAYILSMMPSNFGAKVLLQLPDNRRADIMNRTVNMKAVSPKAAQIIENQVM 192 F+ +EHPQT+A ILS + + +L LP + ++ R M SP+ + +E + Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190 Query: 193 TLLAEIEAE--RNAAGSTKVADLMNELDKPQVDTLLTSLESISREAVNKVRPKIFLFEDL 250 LA + +E +A G V +++N D+ ++ SLE E +++ K+F+FED+ Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250 Query: 251 MYMPQRSRVLLLNDISTDVLTVSLRGSPAEIRESVLSAISPRQRRMIESDLQSGMGGVNP 310 + + RS +L +I L +L+ ++E + +S R M++ D++ +G Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEF-LGPTRR 309 Query: 311 REVAIARRAVAQEAIRLANSGQIELKEKEGD 341 ++V +++ + +L G+I + + Sbjct: 310 KDVEESQQKIVSLIRKLEEQGEIVISRGGEE 340
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 96.5 bits (240), Expect = 8e-28 Identities = 30/86 (34%), Positives = 57/86 (66%), Gaps = 3/86 (3%) Query: 128 SALTSNFELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGEPVEIMVNGRRIA 187 S + +LIMDIP+ + + LG +RM + L+ L +G+ +ALD GEP++I++NG IA Sbjct: 48 SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107 Query: 188 RGEITVLDNDDTRFGVKLIEVLSTKK 213 +GE+ V+ ++GV++ ++++ + Sbjct: 108 QGEVVVV---ADKYGVRITDIITPSE 130
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 58.0 bits (140), Expect = 1e-11 Identities = 37/212 (17%), Positives = 85/212 (40%), Gaps = 12/212 (5%) Query: 104 VITLMEHLLGATADTIEEPAERLLSVIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAP 163 ++++ L G T + +R L+ IE + V +I +R + P L Sbjct: 124 TFSIIDRLFGGTGQAAKV--QRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ- 180 Query: 164 HAHDARPRPAE-DKPDEFAAAINMSITLAGIVSEFSLIIPQTA---LLKTKVTPPKPKRQ 219 + P+ A+ P E + + + + IP ++ + Sbjct: 181 --IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSV 238 Query: 220 TGGNSPEWTEQLGDQVRRSHVTLEAKIRLQDLTLRTISKLMAGDVIPFHDS--GDVRVEV 277 ++ ++ L D++ + + A++ L++R I L GD+I HD+ GD + Sbjct: 239 RRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGD-PFVL 297 Query: 278 SANSKELYICEFGRSGENYMVRVKDTMNSDDE 309 S +++ ++C+ G G+ ++ + + S + Sbjct: 298 SIGNRKKFLCQPGVVGKKIAAQILERIESTSQ 329
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 31.5 bits (71), Expect = 0.003 Identities = 9/37 (24%), Positives = 19/37 (51%) Query: 3 SGLYVSLSSQMALEKRLNTIADNMANVNTTGFRATEV 39 S + ++S A + LNT ++N+++ N G+ Sbjct: 2 SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTT 38
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 56.3 bits (136), Expect = 2e-14 Identities = 23/77 (29%), Positives = 42/77 (54%) Query: 5 DALDLFQAAIWTVLIASGPAVLAAMVVGLVIALIQALTQVQEATLTFVPKIVAVLVVVGI 64 D + A++ VLI SG + A ++GL++ L Q +TQ+QE TL F K++ V + + + Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 TAPFVGSQISIFTNLVF 81 + + G + + V Sbjct: 63 LSGWYGEVLLSYGRQVI 79
>PF06580#Sensor histidine kinase Length = 349 Score = 36.8 bits (85), Expect = 1e-04 Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 20/73 (27%) Query: 365 LVENAINH----CAAGTRITLSLRRQEDRAILSVADTGPGIPAEERDKVFRRLYRIDKSR 420 LVEN I H G +I L + L V +TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA----------------LKN 306 Query: 421 TTPGSGLGLSLVK 433 T +G GL V+ Sbjct: 307 TKESTGTGLQNVR 319
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.1 bits (195), Expect = 3e-19 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 17/177 (9%) Query: 1 MRPMRILLIEDDIKTSDYIAKGFTEAGHVCDVFGDGRDGLFQAQREAYDVIVVDRMLPGL 60 M IL+ +DD + + + AG+ + + D++V D ++P Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 DGLAIIRSLRAAKVGTPALFLTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLA---RVNA 117 + ++ ++ A+ P L +++ ++ E G DYL KPF +EL+ R A Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 118 LGRRPPVQEQRTVLKVADL-----ELDLIRREARRAGQAIELQPREFTLLEVLMRGE 169 +R P + + L + I R R Q T L +++ GE Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQ---------TDLTLMITGE 168
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 128 bits (322), Expect = 7e-35 Identities = 54/365 (14%), Positives = 113/365 (30%), Gaps = 80/365 (21%) Query: 86 AVAPKVAGYIKQVLVNDNDQVKSGQVLARIDDRDFQAALSQARADVKAA----------- 134 + P +K+++V + + V+ G VL ++ +A + ++ + A Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 135 ---------------------------EAAITNIDAQIAL---QQSVIEQAKATVDASQA 164 + I Q + Q+ E A + Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 165 SLDFAVSDAARSARLI-----------TNGAGTQSRAEQSKSARDQAATAVERDRAALVA 213 ++ ++ +R+ A + + ++ +A + ++ L Sbjct: 218 TVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQ 277 Query: 214 AENKVPVFQSQREQAIAQRERAAAAAH---------------QAELNLSYTNIVAAVDGT 258 E+++ + + + + + E + I A V Sbjct: 278 IESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVK 337 Query: 259 VGARSIR-VGQYVTSGTQLMAVVPLHAVYVV-ANFKETQLTHVRPGQPVEIKVDSFPDTA 316 V + G VT+ LM +VP V A + + + GQ IKV++FP T Sbjct: 338 VQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTR 397 Query: 317 ---IRGHVDSVSPASGLEFSLLPPDNATGNFTKIVQRIPVKIVIDDEALSGLLRSGMSVE 373 + G V +++ + D G ++ I + L SGM+V Sbjct: 398 YGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNI-PLSSGMAVT 449 Query: 374 PEIDT 378 EI T Sbjct: 450 AEIKT 454
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 113 bits (283), Expect = 5e-29 Identities = 80/402 (19%), Positives = 166/402 (41%), Gaps = 17/402 (4%) Query: 43 AFMAVLNIQIVNASLADIQGAIGAGTDDGGWISTSYLIAEIVVIPLSGWLTRVFSLRNYL 102 +F +VLN ++N SL DI W++T++++ + + G L+ ++ L Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 103 LVNAILFLIFSVACAFAANLQQMIIL-RAIQGFSGGVLIPMAFTIIITLLPKAKQPIGLA 161 L I+ SV + ++I+ R IQG + ++ +PK + Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 162 LFALSATFAPAIGPTIGGYLTENWGWEYIFYVNLVPGALMVGLLWASLDRAPMNLKLLAR 221 L +GP IGG + W Y+ L+P ++ + + + +++ Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLL---LIPMITIITVPFL-MKLLKKEVRIKGH 198 Query: 222 GDWPGIVTMAIGLAALQTVLEEGNKEDWFSSDFILRLSVISAVSLTLFLIIELKTAQPLL 281 D GI+ M++G+ F++ + + ++S +S +F+ K P + Sbjct: 199 FDIKGIILMSVGIVFFM----------LFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 282 NLRLLLRRNFGSGIVANFLLGIALYGSVFVLPIYLTRIQGYNSEQIGMVLAWTG-IPQLL 340 + L F G++ ++ + G V ++P + + ++ +IG V+ + G + ++ Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 341 LIPLVPRLMKRFDVRLLIAIGFALFAASNFMNVHMTGDYASDQLFWPNIVRAVGQALVFT 400 + L+ R ++ IG + S F+ + S + + G + T Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVS-FLTASFLLETTSWFMTIIIVFVLGGLSFTKT 367 Query: 401 PLSAIATSGIEQENAGSASSLFNMMRNLGGAVGIASLQTFLS 442 +S I +S ++Q+ AG+ SL N L GIA + LS Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.1 bits (140), Expect = 9e-13 Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 2/196 (1%) Query: 6 KRGRPRAFDAKAA-LGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDLYLDT 64 ++ + A + + L A +F +G ++ SL ++ A + R ++Y F DK DL+ + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 65 LEAYRQDGMDALAQALDPSLPLRDNLARVYESALAIYLHGETAARGCLLIGTATAEAV-E 123 E + + + ++ R + E R + I E V E Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 124 RERVREVLGRSLSDFDGEIEKRMRLAVERGELPESADPQMLAKFASAVMHSLAVRARAGD 183 V++ + IE+ ++ +E LP + A + L Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182 Query: 184 SRDTLEAIARSGVDLI 199 L+ AR V ++ Sbjct: 183 QSFDLKKEARDYVAIL 198
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 118 bits (297), Expect = 2e-31 Identities = 81/363 (22%), Positives = 146/363 (40%), Gaps = 10/363 (2%) Query: 50 RNLAVSLIGSFTTIVAMTLLLPFLPLYVEELGVADHAAIVQWSGIAYGATFLAAALVAPL 109 R L V L V + L++P LP + +L ++ GI L AP+ Sbjct: 5 RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVT--AHYGILLALYALMQFACAPV 62 Query: 110 WGRLGDIYGRKLMLMRASLGMTVAISLMGMAGNVWQLVALRLFVGLAGGYSSGSMVLVAT 169 G L D +GR+ +L+ + G V ++M A +W L R+ G+ G + + +A Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIAD 122 Query: 170 QTPKERSAWALGVLSSGIMAGNLVGPLIGGVLPPVIGIRGTFLAAGAMIFLAFLATALLI 229 T + A G +S+ G + GP++GG++ F AA A+ L FL L+ Sbjct: 123 ITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 230 KE----EKSPSRKQAAKASGGWKSIADKGPVVAMLATGMLLMFANMSIEPIITVYVAQIV 285 E E+ P R++A ++ V A++A ++ + ++ Sbjct: 182 PESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGED-- 239 Query: 286 PVATQVTMISGLVMSAAALGSILSASWLGRLADRIGHWPVISGALAVAGLLLIPQAFVTS 345 T I + + L S+ A G +A R+G + + G I AF T Sbjct: 240 RFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATR 299 Query: 346 SWQLIVLRFMMGAALGGLLPCITAVIRHSVPDSAAGGILGLSVSSQYIGQVAGPILGGFV 405 W + ++ A+ G +P + A++ V + G + G + + + GP+L + Sbjct: 300 GW-MAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Query: 406 GGH 408 Sbjct: 359 YAA 361
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.0 bits (78), Expect = 0.001 Identities = 68/327 (20%), Positives = 114/327 (34%), Gaps = 29/327 (8%) Query: 66 LTIMMMVSAVVGPMTGRWLARYGAARVLAAASLTFALGLSLLAAANGIILYAAAWVVIGI 125 L + ++ P+ G R+G VL + A+ +++A A + + +V GI Sbjct: 49 LALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI 108 Query: 126 GGALGLSAPAYTAVVEREGMNGKRVIAILMLFTGLSSAVF------WPILSLLNDTFGWR 179 GA G A AY A + + G SA F P+L L F Sbjct: 109 TGATGAVAGAYIADITDGDERAR--------HFGFMSACFGFGMVAGPVLGGLMGGFSPH 160 Query: 180 LTFLICAALHFFICLPLHLFALPRPIAAQLDGGAADIAPVPLSKAAQRKAFLLIAASTTL 239 F AAL+ L F LP + A PL+ + + + A+ Sbjct: 161 APFFAAAALNGLNFL-TGCFLLPESHKGE-RRPLRREALNPLAS-FRWARGMTVVAALMA 217 Query: 240 TTFITFGISPSLLEI--------FRQSGASPAFALQLGSARGILGISARFLDMLLGRRGN 291 FI + + F + +L L A + R G Sbjct: 218 VFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSL-AQAMITGPVAARLGE 276 Query: 292 PILSAAMGIGLMLTSFLMMLVVGPSMPLLVSFILLYGFGAGIMTVARALLPLALFSPREF 351 + +G+ T ++++ +LL G G M +A+L + R+ Sbjct: 277 -RRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIG-MPALQAMLSRQVDEERQG 334 Query: 352 GLQSARLSLPQNLANAVAPVVFTAILD 378 LQ + +L +L + V P++FTAI Sbjct: 335 QLQGSLAAL-TSLTSIVGPLLFTAIYA 360
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 4e-21 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 1/123 (0%) Query: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGVT 61 ILV +DD + L L AGY V + D ++ D+ +P+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARI-RALIRRAA 120 +L + + A +PVL+++A++ + + + GA DY+ KPF + E++ I RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHA 123 + Sbjct: 125 RPS 127
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 31.8 bits (72), Expect = 0.002 Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 3/54 (5%) Query: 205 DEARQVLEQSLTLEPNNPRARFYVALSMEQAGRAEEARRAFE---ALAQQSPAD 255 D A ++ PR F+ A + Q G EA L Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEF 140
>PF04647#Accessory gene regulator B Length = 212 Score = 27.4 bits (61), Expect = 0.022 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%) Query: 16 SFILAAVLLVMFAFSQSVAYFYMPADLARTPVAPETRIR 54 F L ++L+ F S F +P D R ++ + + Sbjct: 102 YFQL--LILIAFITSLLALLFLVPVDNPRNLISNTEQRK 138
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 60.0 bits (145), Expect = 6e-12 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 24/157 (15%) Query: 145 GSGFFISEDGYIVTNNHVV-ADGQAFVAVM-----------NDGTELDAKLIGKDPRTDL 192 SG + ++TN HVV A A+ +G ++ DL Sbjct: 104 ASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 162 Query: 193 AVLKVDGK------GKKFTYVNWADDNNVRVGDWVVAVGNPFGLGGTVTAGIISARGRDI 246 A++K G+ +++ +V + G P A + ++G+ Sbjct: 163 AIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP---VATMWESKGKIT 219 Query: 247 GSGPYDDYLQVDAAVNRGNSGGPTFNLNGEVVGINTA 283 +Q D + GNSG P FN EV+GI+ Sbjct: 220 YLKGEA--MQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 3e-20 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 26 RMKILIIEDDLEAAAYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRRDG 85 IL+ +DD L +A AG S+ + D++V D ++P + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 86 LSVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVE-VLGRR 144 ++ +++ PVL++SA + G DYLPKP+ +EL+ + L Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 145 KGTPEQ 150 K P + Sbjct: 123 KRRPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 41.8 bits (98), Expect = 7e-06 Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 40/166 (24%) Query: 614 LHRERIDLVPLIEESLRFTAIPAAEKNIVIEQ-RISSGLTLT-------ADRRAMKQVLL 665 L V L +E + + + + + L D + ++ Sbjct: 208 LRYSNARQVSLADE------LTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQ 261 Query: 666 NLLSNAVKF----TDDGGRIAVRTRRVDGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQ 721 L+ N +K GG+I ++ + +G V + + +TG ++ Sbjct: 262 TLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN--------------- 306 Query: 722 YAKSKGGSGLGLA-ISRSLTSLHGG--RMKIRSREAVGTVISLRIP 764 +K +G GL + L L+G ++K+ ++ + + IP Sbjct: 307 ---TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.0 bits (62), Expect = 0.037 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 4/85 (4%) Query: 7 LSPAELAALLHFHADAGVEWLQEEEAVDRFAEFEAMKAARRPAAQAQQERPIAEERPLPG 66 + A +A LL+ V + E A + + A QA Q P P P Sbjct: 19 IHGAVVAGLLY----TSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPE 74 Query: 67 QRQTSPRPSAAARPAPASGPQPAIP 91 P A P+P Sbjct: 75 PEPIPEPPKEAPVVIEKPKPKPKPK 99
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 42.1 bits (99), Expect = 3e-06 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 17/125 (13%) Query: 103 EDLMEIFVRRLRSYAGDNWPSDVSRIVTGRPVHFAGANPDPILATERYNEALSRFGFPEI 162 E +++ F++++ +++ R++ P GA A E+ G E+ Sbjct: 88 EKMLQHFIKQVH---SNSFMRPSPRVLVCVP---VGATQVERRAIR---ESAQGAGAREV 138 Query: 163 HYVYEPVAAAFYFAQDLKQDATVLVADFGGGTTDYSLIRFETVAGKLTATPIGHSGVGVA 222 + EP+AAA + + +V D GGGTT+ ++I G + + S V + Sbjct: 139 FLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISL---NGVVYS-----SSVRIG 190 Query: 223 GDHFD 227 GD FD Sbjct: 191 GDRFD 195
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 772 bits (1995), Expect = 0.0 Identities = 286/1035 (27%), Positives = 485/1035 (46%), Gaps = 28/1035 (2%) Query: 2 IPNFCIQRPVATTLLAIGVILAGLAGYRLVPVAALPQVDFPTINVSAQLSGASPQTMATS 61 + NF I+RP+ +LAI +++AG +PVA P + P ++VSA GA QT+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 62 VATPLIKQFETIPGISEI-SASSSLGNTSIVLQFDLNRDIDAAAADVQAAISHATRQLPD 120 V + + I + + S S S G+ +I L F D D A VQ + AT LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 NLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLD--EIAEDIISPSLSTLPGVAQVSVYG 178 + + + + +M+ S+ ++ D + + +LS L GV V ++G Sbjct: 121 EVQQQGISVE-KSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 179 AQTYAVRVEVDPNRLLTRGIGIDTVNKALAAANSQQPVGTLQN------NSQSMTITANT 232 AQ YA+R+ +D + L + V L N Q G L + +I A T Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 233 QRTNAEQFRSLVI-ANPNGAPIHLGDVADVQDGVENQYTGSWYDGQRGIILAIQRQPDAN 291 + N E+F + + N +G+ + L DVA V+ G EN + +G+ L I+ AN Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 292 TVDVVDAINAKLPQLHAEIPASVTTVVMNDAAKPIRAAIADVKFTLFLTIGLVVLVIYLF 351 +D AI AKL +L P + + D ++ +I +V TLF I LV LV+YLF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 352 TGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGLTLAVGLVVDDAIVMLENILR 411 + AT+IP +AVP+ L+ TF ++ GYSI+ +++ G+ LA+GL+VDDAIV++EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 412 HI-EEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLMGGVVGRVFNEFGMVVAIAI 470 + E+ +P +EA K ++ ++ +++ L AVFIP+ GG G ++ +F + + A+ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 471 ISSAIVSLTVTPMLGSRL-----SNNHSRPPLLIRIFDAGFERTLSGYDRAVGWCLRHRV 525 S +V+L +TP L + L + +H F+ F+ +++ Y +VG L Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTG 538 Query: 526 TILGVFLGSVALTIYFFMTLPTSFFPQEDIGRLTISTQARQDISYSAMEALQQQAAAAVK 585 L ++ VA + F+ LP+SF P+ED G Q + + + Q Sbjct: 539 RYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYL 598 Query: 586 ANPAVN--HVMSTIGGNPN-KPQNNGSMFVELKDKKERPPLDQT----LRELRTAINKIP 638 N N V + G + + + QN G FV LK +ER + + + + + KI Sbjct: 599 KNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR 658 Query: 639 GLQAFVTPNQSLRFGGRQTASQYQLV-IQALSADQTNLWAGKIQAAMRGDRGLFTDVTSD 697 ++ G T ++L+ L D ++ V + Sbjct: 659 DGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPN 718 Query: 698 AQNNALQANIVIDTERAAAYGIDNDTLRTTLQESFSGYTAAEIQSTGDSYDVIVEYDTSK 757 + Q + +D E+A A G+ + T+ + G + G + V+ D Sbjct: 719 GLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKF 778 Query: 758 PWDDQKLAEIRVASSNGSLVPLSNFAHVQRTTGPVTINQTGQLVSTTVSFNLPEGVSLSD 817 + + ++ V S+NG +VP S F G + + L S + G S D Sbjct: 779 RMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGD 838 Query: 818 ATAAIDEIKKEISLPADVFTSYGGTAEIFQQSQGNTPYLILAAVLTIYVVLGVLYESFIH 877 A A ++ + + LPA + + G + + S P L+ + + +++ L LYES+ Sbjct: 839 AMALMENLASK--LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSI 896 Query: 878 PLTILSGLPAAAFGALLALKIMGFDLSIIALIGLLMLIGIVKKNAIMMIDVAVETMRTTG 937 P++++ +P G LLA + + ++GLL IG+ KNAI++++ A + M G Sbjct: 897 PVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEG 956 Query: 938 EKATAAIHEACVRRFRPIMMTTFCALLGALPIALGTGASSELRQPLGIAVVGGLVVSQLL 997 + A A R RPI+MT+ +LG LP+A+ GA S + +GI V+GG+V + LL Sbjct: 957 KGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLL 1016 Query: 998 TLFITPVIFVEMDRF 1012 +F PV FV + R Sbjct: 1017 AIFFVPVFFVVIRRC 1031
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 1e-05 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 8/127 (6%) Query: 100 VTASGWADADDNT-TMAAQEQGLIVSINAQDGATVKAGDLIAKLDDRTAKAAVDKDNAMI 158 TA+G + + E ++ I ++G +V+ GD++ KL A+A K + + Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSL 143 Query: 159 V-------RDTATLSEAETALVRAQDLFDQKAGTQQSLDQARAARDTAAATVEADKATLA 211 + R E + L D+ S ++ + Sbjct: 144 LQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY 203 Query: 212 SDRIILE 218 + L+ Sbjct: 204 QKELNLD 210 Score = 36.3 bits (84), Expect = 2e-04 Identities = 29/178 (16%), Positives = 66/178 (37%), Gaps = 12/178 (6%) Query: 138 LIAKLDDRTAKAAVDKDNAMIVRDTATLSEAETALVRAQDLFDQKAGTQQS--LDQARAA 195 IAK + + + + L + E+ ++ A++ + ++ LD+ R Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQT 307 Query: 196 RDTAAATVEADKATLASDRIILENTNIRAPFDGRLGDIAV-SKGAFLNAGSAIVTIA-KY 253 D LA + + + IRAP ++ + V ++G + ++ I + Sbjct: 308 TDNIGLLTL----ELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPED 363 Query: 254 DPIYVKFHLQERYLRVLKKALTVGPVEVSTVPASSKGQVRKGEIS--FYDNTVDTASG 309 D + V +Q + + + ++V P + G + G++ D D G Sbjct: 364 DTLEVTALVQNKDIGFINVGQNA-IIKVEAFPYTRYGYLV-GKVKNINLDAIEDQRLG 419
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 100 bits (251), Expect = 1e-27 Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 8/262 (3%) Query: 4 GIKGKRALVLASSRGLGLGIGVALAREGADVLLCGRSGEQLEANCKAINSEGHGRADWIW 63 GI+GK A + +++G+G + LA +GA + + E+LE ++ +E A+ Sbjct: 5 GIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR-HAEAFP 63 Query: 64 ADLSDERFVETATTAVKNKFGGLDILVNNTGGPTPGTTEDMTAEKLETYFLSMVARVITL 123 AD+ D ++ T ++ + G +DILVN G PG ++ E+ E F V Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 124 TNALLPDMKAQGWGRILTVASSGVIEPIANLALSNTLRPALAGWSKTLASEVASFGITTN 183 + ++ M + G I+TV S+ P ++A + + A ++K L E+A + I N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 184 LLLPGSILTARLDDL---DGAAAKRTGKSLEEIRADKEARIPVGRYGRVEEFAATAAFLC 240 ++ PGS T L + A + SLE + IP+ + + + A FL Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG----IPLKKLAKPSDIADAVLFLV 239 Query: 241 SQPASYITGSLIRCDGGAARSV 262 S A +IT + DGGA V Sbjct: 240 SGQAGHITMHNLCVDGGATLGV 261
>SECA#SecA protein signature. Length = 901 Score = 31.8 bits (72), Expect = 0.004 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 76 KSGKRSEIVLATKVAGRGRDYLRGGE-GADARNIRLALEASLKRLKTDYVDLYQ 128 ++G + + +AT +AGRG D + GG A+ + ++++K D+ + Sbjct: 493 QAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHD 546
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 136 bits (343), Expect = 2e-41 Identities = 86/251 (34%), Positives = 132/251 (52%), Gaps = 13/251 (5%) Query: 4 LSGRKALVTGASGGIGEEIARLLHQQGAIVGLHGTRVEKLEALAAEL---GERVKIFPAN 60 + G+ A +TGA+ GIGE +AR L QGA + EKLE + + L + FPA+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 61 LSDRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDAVLEVNLTATFRLTR 120 + D + + + E ++ +DILVN AG+ + GL +SDE+W+A VN T F +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 121 ELTHPMMRRRYGRIINITSVVGVTGNPGQANYCASKAGMIGFTKSLAQEIATRNVTVNCV 180 ++ MM RR G I+ + S A Y +SKA + FTK L E+A N+ N V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 181 APGFIESAMTGKL---NDKQKEAIMG-------AIPMKRMGTGGEVASAVAYLASSEAAY 230 +PG E+ M L + ++ I G IP+K++ ++A AV +L S +A + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 231 MTGQTLHVNGG 241 +T L V+GG Sbjct: 246 ITMHNLCVDGG 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.0 bits (57), Expect = 0.015 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%) Query: 34 GADSLDTVELVMAFEEEFGVEIPDDAADSILTVGDAVKFIEKA 76 GA++LDT + + A E P +L D F++ + Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGM--KVLYPYDTTPFVQLS 336
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.035 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 17 MLVISSPSGAGKSTIARTLLETD 39 +V+ G GKST+ TL+ D Sbjct: 598 SVVLEGTGGIGKSTLINTLVGLD 620
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 63.3 bits (154), Expect = 4e-15 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 4/118 (3%) Query: 5 VMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKHRPDLILMDIQLPEVSGLEV 64 +++ +D+ + + +GY T N DL++ D+ +P+ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 TKWLKEDDELHVIPVIAVTAFAMKGDE-ERIRQGGCEAYVSKPISVPKFIETIKTYLG 121 +K+ +PV+ ++A + +G + Y+ KP + + I I L Sbjct: 66 LPRIKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYD-YLPKPFDLTELIGIIGRALA 120
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.3 bits (206), Expect = 3e-19 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 ARILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERNQVDLILLDIMMPGIDGF 62 A ILV DD A +L L +DV ++ DL++ D++MP + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122 ++ R+K ++ +PV++++A + ++ + GA D+L KP + +LI + L Sbjct: 64 DLLPRIKKARP--DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Score = 57.5 bits (139), Expect = 5e-11 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 6/139 (4%) Query: 155 AGQVLLVDGRANSQERIVKALKSVA-DVVALSDPQAALFEAAENTFDLVIVNANFDDYDP 213 +L+ D A + + +AL DV S+ A DLV+ + D + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 214 LRLCSQLRSLERTRFLPILIITEQGADDMVVRALDLGVNDYLIRPVDPNELVA---RSLT 270 L +++ + LP+L+++ Q ++A + G DYL +P D EL+ R+L Sbjct: 63 FDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 271 QIRRKRYNDRLRASVKQTI 289 + +R+ + + Sbjct: 121 EPKRRPSKLEDDSQDGMPL 139
>CLENTEROTOXN#Clostridium enterotoxin signature. Length = 319 Score = 24.2 bits (52), Expect = 0.031 Identities = 11/39 (28%), Positives = 17/39 (43%) Query: 11 LLSTADTGFFYVTTKNSRTMTDKMTKTKYDPIAKKHVEF 49 L + + T K + +T T KY +A K V+F Sbjct: 223 LYDWRSSNSYPWTQKLNLHLTITATGQKYRILASKIVDF 261
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 67.5 bits (165), Expect = 2e-14 Identities = 83/382 (21%), Positives = 150/382 (39%), Gaps = 24/382 (6%) Query: 19 SLVAAISSISAVGIAIGLGLPLLSIILEKRGISSTLI---GLNTAMAGISAMAAAPVTTK 75 L+ +S+++ + IGL +P+L +L S+ + G+ A+ + A APV Sbjct: 6 PLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 76 LAHKYGVAPTMLWAVLISALSALGFYYAEDFWMWFPLRFAFHGATTTLFILSEFWINAAS 135 L+ ++G P +L ++ +A+ A W+ + R G T ++ +I + Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRI-VAGITGATGAVAGAYIADIT 124 Query: 136 PPSKRGFVLGIYATVLSIGFAAGPLLFSILGSDGI-FPFLVGAGAILLAAIPIFIARDES 194 +R G + G AGP+L ++G PF A L + ES Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPES 184 Query: 195 PVLEEKPE----------LHFMRYVLLVPTATAAVFIFGAVEAGGLSLFPIFAV-RAHFT 243 E +P + R + +V A FI V +L+ IF R H+ Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 244 ESQAALLLTMMGVGNVIFQIPL-GLLSDRIRDKRPLLAGMALMGFIGSMTLPILVNNWLL 302 + + L G+ + + Q + G ++ R+ ++R L+ GM G G + L W+ Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADG-TGYILLAFATRGWMA 303 Query: 303 MAGILLFWGGCVSGLYTVGLSHLGSRLTGS-DLAAANAAFVFCYAMGTVAGPQVIGA--A 359 ++L G G+ L + SR + ++ ++ GP + A A Sbjct: 304 FPIMVLLASG---GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 360 IDVAGNNGFAWAIAAFFGLYAL 381 + NG+AW A L L Sbjct: 361 ASITTWNGWAWIAGAALYLLCL 382
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 28.0 bits (62), Expect = 0.016 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 7/76 (9%) Query: 131 RLPTFRSLAGTWAMQRPGGEKLCSVTLDGTLDTDGHAPLSLSADCAANVARLKLAVWNID 190 +P+ +AG ++ + L+ CA K W+ Sbjct: 29 VVPSTAQMAGQLGIE--ATGSGVCAG-----PAEQANALAGDVACAEQWLGDKPVSWSPT 81 Query: 191 GFGLTLMSHDGSSLSF 206 G+ LM+ +G+ ++ Sbjct: 82 PDGIWLMNAEGTGITH 97
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 84.9 bits (210), Expect = 5e-20 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 10/150 (6%) Query: 13 VNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQIDAAPE-------EKARGITISTAHVEY 65 +NIG + HVD GKT+LT ++ G +D E+ RGITI T + Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 66 ETPARHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPA 125 + +D PGH D++ + + +DGAIL+ SA DG QTR R++G+P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT 123 Query: 126 IVVFLNKVDQVDDAELLELVELEVRELLSS 155 I F+NK+DQ +L + + +++E LS+ Sbjct: 124 I-FFINKIDQN-GIDLSTVYQ-DIKEKLSA 150
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 69.4 bits (170), Expect = 1e-15 Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 40/205 (19%) Query: 4 RILFTGGSGKAGRHAVPWLVNAGYEVHNLD--------------LVPLDSPGVTNLIADI 49 + L TG +G G H L+ AG++V +D L L PG D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 50 TDSGQVFNALSMHRDFPDLDGGRGVQPFDAVVHFAA---IPRILIKPDNETFRINVMGTY 106 D + F+ V + L P N+ G Sbjct: 62 -------------ADREGMTDLFASGHFERVFISPHRLAVRYSLENPH-AYADSNLTGFL 107 Query: 107 NVIEAAVKLGIRKIIVASSETTYGVCFAEGHRDFHQFPLEEDYDVN-PMDSYGLSKVVNE 165 N++E I+ ++ ASS + YG + P D V+ P+ Y +K NE Sbjct: 108 NILEGCRHNKIQHLLYASSSSVYG--------LNRKMPFSTDDSVDHPVSLYAATKKANE 159 Query: 166 KTARAFAERSGFDIYALRIGNVIEP 190 A ++ G LR V P Sbjct: 160 LMAHTYSHLYGLPATGLRFFTVYGP 184
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 40.6 bits (95), Expect = 3e-08 Identities = 17/54 (31%), Positives = 35/54 (64%) Query: 8 IAFLQQVRSETSKVTWPSRRETMISTVMVLVMVVFAALFFFAADQLIGWVLSFV 61 +AF ++ R+E KV WP+R+ET+ +T++V + +L + D ++ ++SF+ Sbjct: 69 VAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFI 122
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.6 bits (66), Expect = 0.006 Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 3/137 (2%) Query: 11 QSLRKEQAEQRKQSRKGELDKAIEDTFPASDPVSATHTSIPVGRSDVEAAERVKREPDPT 70 Q+ ++ ++ K +++ P V++ + V+ RE DPT Sbjct: 1096 QTTETKETATVEKEEKAKVETEKTQEVPK---VTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 71 ALDQEYPLVDQALRSTGQTARASDRFDADREELRALQKEAGRIAESASELASGTARLAKA 130 +E T Q A+ + + E+ T + Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 131 EARSFVQDFEDRIRRQP 147 S R + Sbjct: 1213 SESSNKPKNRHRRSVRS 1229
>cloacin#Cloacin signature. Length = 551 Score = 40.5 bits (94), Expect = 1e-06 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 8/68 (11%) Query: 50 NNGNGGGSGNGSGNGGGNGNGGGSGNGGGNGGNGSGNSAGGSSNSNAGSSSSSVSTGSKA 109 NN GGGSG+G GG G G GNGGGNG +G G+ GG N + ++ V+ G A Sbjct: 43 NNPWGGGSGSGIHWGG----GSGHGNGGGNGNSGGGSGTGG----NLSAVAAPVAFGFPA 94 Query: 110 RVTEGTDG 117 T G G Sbjct: 95 LSTPGAGG 102 Score = 32.8 bits (74), Expect = 4e-04 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 49 GNNGNGGGSGNGSGNGGGNGNGGGSGNGGGNGGNGSG-----NSAGGSSNSNAGSSSSSV 103 N NGG +G G G G +G+G S N GG+GSG S G+ N S S Sbjct: 17 SGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSG 76 Query: 104 STGSKARV 111 + G+ + V Sbjct: 77 TGGNLSAV 84 Score = 31.6 bits (71), Expect = 0.001 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 52 GNGGGSGNGSGNGGGNGNGGGSGNGGGNGGNGSGNSAGGSSNSNAGSSSSSVSTG 106 G+G G G+ + GN NGG +G G GG G+ +N G S S + G Sbjct: 4 GDGRGHNTGAHSTSGNINGGPTG-LGVGGGASDGSGWSSENNPWGGGSGSGIHWG 57 Score = 31.6 bits (71), Expect = 0.001 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Query: 43 HAEAKDGNNGNGGGSGNGSGNGGGNG-----------NGGGSGNGGGNGGNGSGNSAGGS 91 H +GN G G G GGG GGGSG+G GG + GG+ Sbjct: 9 HNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGN 68 Query: 92 SNSNAGSSSSSVSTGSKARVTEG 114 NS GS + + A V G Sbjct: 69 GNSGGGSGTGGNLSAVAAPVAFG 91
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.1 bits (138), Expect = 5e-12 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 9/163 (5%) Query: 1 MTQITVGVVDDHPLFREGVTRSLSEMSDFVVIGEGASSEDAAMIASNNRPDIMLLDVSMP 60 MT T+ V DD R + ++LS V I A + D+++ DV MP Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNA--ATLWRWIAAGDGDLVVTDVVMP 58 Query: 61 GG-GLAAIGNVLALSPTTKVLMLTVSEEVDTLLGALQEGAMGYVLKGVGSRGLAEAIHTV 119 + + P VL+++ T + A ++GA Y+ K L I Sbjct: 59 DENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118 Query: 120 LSGSRYVSPTMSAKAMENSLQNGSSDKNSLTPREREVMDLVAQ 162 L+ + + + + G S +E+ ++A+ Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRS------AAMQEIYRVLAR 155
>PF06580#Sensor histidine kinase Length = 349 Score = 46.4 bits (110), Expect = 1e-07 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 382 NAYRHG-----GGVQQTVKAVSHNGHVCVAVSDRGDGFDPTEVRPTSLGLVGLRERIDSL 436 N +HG G + +K NG V + V + G T GL +RER+ L Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKESTGTGLQNVRERLQML 325 Query: 437 GG---SFDIETGEGGTTVT 452 G + +G Sbjct: 326 YGTEAQIKLSEKQGKVNAM 344
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.2 bits (91), Expect = 2e-07 Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 11 EMRGQGVGTGMIEFAISEAKGRGVRLVQLTSNAIRKDAHRLYERLGFK 58 + R +GVGT ++ AI AK + L + I A Y + F Sbjct: 100 DYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 28.8 bits (64), Expect = 0.010 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 19/99 (19%) Query: 44 RGVLPLDNFHISKSLAKRVRRRPFEI-RFDHDFEQVIAACAEETSGRPSTWINQTIRSLY 102 V P+ +F ++ L K +E+ R DH FE+ ++ E R I+ R Sbjct: 21 ESVKPVSDFELNNYLGKW-----YEVARLDHSFERGLSQVTAEYRVRNDGGISVLNR--- 72 Query: 103 ATLFEIGHAHTVEAWDGDE----LVGGLYGVSLGSAFFG 137 G++ W E V G L +FFG Sbjct: 73 ------GYSEEKGEWKEAEGKAYFVNGSTDGYLKVSFFG 105
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 28.6 bits (64), Expect = 0.009 Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 129 IPSPKAGKVTEILVDDGHPVEYGQALV 155 I + V EI+V +G V G L+ Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLL 125
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 45.2 bits (107), Expect = 6e-08 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Query: 2 HLVLVDHNLPRTSGRAFAQKLRSE-ANIGIVMVTAAGSAADRVLGLETAADDYVVKPFEP 60 LV+ D +P + +++ ++ +++++A + + E A DY+ KPF+ Sbjct: 49 DLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDL 108 Query: 61 IELTARIKAVLRRTVPSLKQEKESEREHERPSLLLGD 97 EL I L ++ + E + + L+G Sbjct: 109 TELIGIIGRALAEPK---RRPSKLEDDSQDGMPLVGR 142
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 3e-05 Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 18/134 (13%) Query: 449 DILEIAVGTKCRIKLELDARLPVVSLDAALLEQSVLNLCLNASAAMPMGGVIVIGATADQ 508 + I + + + +++ + V + L++ V N + A +P GG I++ T D Sbjct: 230 QLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDN 289 Query: 509 DALLISVTDSGIGMSPEVIDKAFEPYFTTRGAHGGAGLGLAMVYGFVRQSGGEA---SID 565 + + V ++G G GL V ++ G + Sbjct: 290 GTVTLEVENTGSLALKNT--------------KESTGTGLQNVRERLQMLYGTEAQIKLS 335 Query: 566 SSPGQGTTVKLSFP 579 G + P Sbjct: 336 EKQG-KVNAMVLIP 348
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 0.002 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%) Query: 165 PDFQGRGLGSLLFRFV---AGEIASGGDTAYLHAYAANTSAISLYAAHGFVV 213 D++ +G+G+ L A E G L N SA YA H F++ Sbjct: 99 KDYRKKGVGTALLHKAIEWAKENHFCG--LMLETQDINISACHFYAKHHFII 148
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 56.0 bits (135), Expect = 8e-11 Identities = 66/313 (21%), Positives = 113/313 (36%), Gaps = 22/313 (7%) Query: 4 IIATVTVF--AVAQGLTYPLLSLILERQGIPSGLI----GLSAAMTPLGFIISAPFIPAL 57 I+ TV AV GL P+L +L R + S + G+ A+ L AP + AL Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLL-RDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 58 SRGVGGARLAILCSILAALTLVAIAWTQQVWAWMPLRLLLGFFANPLYVISETWLITITP 117 S G + ++ AA+ +A +W R++ G V + IT Sbjct: 67 SDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAY-IADITD 125 Query: 118 APRRGRILGLYSSIVSAGFAVGPLSLGFAGTDG-WPPFIIGVSAFLACGLIVLAV----- 171 R R G S+ G GP+ G G PF +A + Sbjct: 126 GDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAA-AALNGLNFLTGCFLLPES 184 Query: 172 -----APRLLEMPDEGEATSVGGFFALAPLLLLAVFTAAAFEQIQLSLFAVYGAALGSAE 226 P E + + + L+ F Q+ +L+ ++G + Sbjct: 185 HKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWD 244 Query: 227 RRTASL-ITCFVAGNAVLQIPL-GRAAERFGATRTMIFCILVCLTGCLLLAVAFSTWLIW 284 T + + F +++ Q + G A R G R ++ ++ TG +LLA A W+ + Sbjct: 245 ATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAF 304 Query: 285 PLVFAWGGVSFGL 297 P++ G+ Sbjct: 305 PIMVLLASGGIGM 317
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 32.8 bits (75), Expect = 0.001 Identities = 56/234 (23%), Positives = 82/234 (35%), Gaps = 55/234 (23%) Query: 71 VVRPASNDPVLIKRFLDIGVQTLLVPYVQNEEEAKAAVA--AIR----YPPHGVRGVSAL 124 VV+ PV+I R LDIG L Y+Q +E + AIR + AL Sbjct: 321 VVQRMDGKPVVI-RTLDIGGDKEL-SYLQLPKELNPFLGFRAIRLCLEKQDIFRTQLRAL 378 Query: 125 TRATRFGRV----PNYA---------RIAEQEICLLLQ--------------IETREALG 157 RA+ +G + P A I ++E LL +E Sbjct: 379 LRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAV 438 Query: 158 RLEAIATVEGVDGVFIGPADL-----AASFGHPG-----QPGHPEVVAAIEDAIGRLKIL 207 A + VD IG DL AA + QP HP ++ ++ I Sbjct: 439 AANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAILRLVDMVIKAAHSE 496 Query: 208 GKPAGI---LTPDETFAARCISLG-----TSFTAVGVDIALLARGSEALAARFA 253 GK G+ + DE + LG S T++ + L + S+ FA Sbjct: 497 GKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEELKPFA 550
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.1 bits (117), Expect = 2e-08 Identities = 76/398 (19%), Positives = 150/398 (37%), Gaps = 29/398 (7%) Query: 1 MGKREFIALAAFLMAINSLAIDIMLPALQQIGASLGVESE--NHRQFVVSSYLLGFGCAQ 58 M + + +A++++ I +++P L + L ++ H +++ Y L Sbjct: 1 MKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACA 60 Query: 59 LFYGPLSDRFGRRTPLLIGLVVYITSAIGIVFVPSFAGLLVLRFIQGVGSAATRVITISI 118 G LSDRFGRR LL+ L + P L + R + G+ + AT + + Sbjct: 61 PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAY 119 Query: 119 VRDIYGGRQMAEVMSLIMMVFMIVPVIAPGTGQIVMFFGNWHLIFLFIATMATAIGVWAY 178 + DI G + A + F V P G ++ F H F A + + Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGC 178 Query: 179 VRLPETLHPQNIRPFTARSI--FGAFKLVLTNRVALCYTIASTFIFGALFGFINSAQQIY 236 LPE+ H RP ++ +F+ V +A+ + + Q+ Sbjct: 179 FLLPES-HKGERRPLRREALNPLASFRWARGMTV-----VAALMAVFFIMQLVG---QVP 229 Query: 237 VGIYGLGVYFPFAFAGVAIFMSLS------SFFNSRFVGKLGMRRLS--HGSLLGFIAIN 288 ++ + F + I +SL+ S + G + RL +LG IA Sbjct: 230 AALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPV-AARLGERRALMLGMIADG 288 Query: 289 TIWLIVQTASSEPMPFALFISFFGLAMFQFGWIGSNFNSLAMEPLGHVAGTASSVLGFMS 348 T ++++ A+ M F + + + + E G + G+ ++ L ++ Sbjct: 289 TGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAA-LTSLT 347 Query: 349 TVGGALIGAGI----GQAFDGTALPMVAGYFIVSIIGL 382 ++ G L+ I ++G A A +++ + L Sbjct: 348 SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPAL 385
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 61.8 bits (150), Expect = 2e-12 Identities = 87/403 (21%), Positives = 146/403 (36%), Gaps = 33/403 (8%) Query: 25 VVTIAIMTASIAMAIDSMLPALPNIGHSLGVTNTNDAQLIIGVFFLGFGVSQIFF----G 80 ++ I A A+ I ++P LP + L ++ND G+ + + Q G Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDL--VHSNDVTAHYGILLALYALMQFACAPVLG 64 Query: 81 SLSDTFGRRNILLGGLACYVVAMFAAAATGSFEMLLLMRFVQGVGGAAVRITTMAIVRDC 140 +LSD FGRR +LL LA V A +L + R V G+ GA + A + D Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG-AYIADI 123 Query: 141 FGGREMARVMSYVMIVFMIVPIVAPSVGQLIVLYANWHWIFILLGAVATILFVWALLRLK 200 G E AR ++ F + P +G L+ ++ H F A+ + F+ L Sbjct: 124 TDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP-HAPFFAAAALNGLNFLTGCFLLP 182 Query: 201 ESLPPAER-LPLSVGSVADGFKTVLTNRITCGYMIGLTMFTGVISAYVISVQQVFGEVYG 259 ES R L + F+ + M + ++ ++ +FGE Sbjct: 183 ESHKGERRPLRREALNPLASFRWARGMTVVAALMA-VFFIMQLVGQVPAALWVIFGEDRF 241 Query: 260 LGDRLPIAFAATAGGIAVANF---ANGFFVRKFGMRRISHAALLIFTALSAVGFVIALAG 316 D I + A GI + G + G RR AL++ G+++ Sbjct: 242 HWDATTIGISLAAFGILHSLAQAMITGPVAARLGERR----ALMLGMIADGTGYILLA-- 295 Query: 317 KPDFATAYSIFTIVLMMFAVIATNFTAI--------SLEPMGNLAGTA---TAITGFVST 365 FAT + ++++ A A+ E G L G+ T++T V Sbjct: 296 ---FATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352 Query: 366 TFGAILGGLVGQMFNGTVQPLFGGFALFGLLTIAATLWAENGK 408 + +NG L L + LW+ G+ Sbjct: 353 LLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQ 395
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.019 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 86 VHPDFQGLGVATRLLGRVDEEALRLGFRRIYTEASRT---ARRFFERKGFRV 134 V D++ GV T LL + E A F + E A F+ + F + Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 28.3 bits (63), Expect = 0.036 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 18/93 (19%) Query: 122 GHFEADVNVNGRPVEMLV-------DTGSSMVALSHEDAERIGIDLAGLTYSMTVMTANG 174 G + D+ +N + + L+ +G++ A ++ N Sbjct: 76 GTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVS------GMNL 129 Query: 175 RSRAAPVTLDQVAIGPIVRNNVAASVAEDGRLD 207 + A V L + + +V RL+ Sbjct: 130 LADDACVPLTSMIHDATAQLDVG-----QQRLN 157
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 58.7 bits (142), Expect = 2e-11 Identities = 88/366 (24%), Positives = 146/366 (39%), Gaps = 37/366 (10%) Query: 29 TILLLLTALSVLPVNIYLPALPNIAATFRADFALVN---LSIAGYAIINAVTAIIAGAMS 85 ++L AL + + + +P LP + + + +A YA++ A + GA+S Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 86 DRYGRRPVALIAVSIFVIASIGCALAPNIGIFLLFRVMQASIAACFCVALVVIKETAGDR 145 DR+GRRPV L++++ + A AP + + + R++ A VA I + Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGD 127 Query: 146 QAANRIGYVAMGWAIAPMLGPSFGGVLDEAFGWRAIFVALALLGAAILAISMRELKETAG 205 + A G+++ + + GP GG++ F A F A A L L E+ Sbjct: 128 ERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHK 186 Query: 206 HASGPKGNYFAAYRQLLSSSRFGAYTLCMACSTGTLYIF-LGGASLAAVSSLGG------ 258 P L+S R+ +A +I L G AA+ + G Sbjct: 187 GERRPLRR---EALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHW 243 Query: 259 SSAKLGFFMGMVPAGFILGSYLAARLAGKSLSTTLVIARLSTCMGLLLGLILSISGVTHV 318 + +G + A IL S A + G V ARL L+LG+I +G + Sbjct: 244 DATTIGI---SLAAFGILHSLAQAMITGP------VAARLGERRALMLGMIADGTGYI-L 293 Query: 319 LAFFG------PCMFIGIGNGLTFPAANLGVMSVRAN------LAGTAAGLAAAMSIAGA 366 LAF P M + G+ PA ++S + + L G+ A L + SI G Sbjct: 294 LAFATRGWMAFPIMVLLASGGIGMPALQ-AMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352 Query: 367 ALIASI 372 L +I Sbjct: 353 LLFTAI 358
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.0 bits (176), Expect = 3e-17 Identities = 67/259 (25%), Positives = 101/259 (38%), Gaps = 15/259 (5%) Query: 1 MTAIRIEGAKVLIVGGGSGMGLALAMRLLAEGASVTIAGRSRE---RLAAARRHLGDHPN 57 M A IEG I G G+G A+A L ++GA + + E ++ ++ + H Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 58 L--ATRAVDITREEEVAALFQGGEPLDHIVSTAADIEGAYQLLPSIELVAAQRVVESKFY 115 A +E A + + P+D +V+ A + S E A V S Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 116 GPLLLAKHGAIRLPPAGSITYTSGVAAYRPAARGSVVAAVNAALEGLVRALALELAP--I 173 + + +GSI A P + A+ AA + L LELA I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 174 RINAVSPGWVDT----PIWGFVAGDAKQATLDAMAERL--PAGRVGQPEDIADAIRFLIG 227 R N VSPG +T +W G + + P ++ +P DIADA+ FL+ Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 228 N--GFTTGTILHVEGGHRL 244 G T L V+GG L Sbjct: 241 GQAGHITMHNLCVDGGATL 259
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 65.3 bits (159), Expect = 9e-15 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 3/226 (1%) Query: 18 RRTLLQSVISPVISTSLYFIVFGAAIGSRIQEVEGVSYGAFITPGLIMLTLLGQCISNGS 77 ++ L S++ + +Y GA +G + V GVSY AF+ G++ + + Sbjct: 28 KKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSAMTAATFETI 87 Query: 78 FGIYFPKF-TGTIYEVLSAPVAMTEILLGYVGAAATKGMIIGVIILLTANLFVDVRIEHP 136 + + T +L + + +I+LG + AATK + G I + A + Sbjct: 88 YAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSL 147 Query: 137 FMMILFFLLTAVTFSLFGFMIGIWAGNFEQLNLIPMLVVPPLTFLGGSFYSINMLPPFWQ 196 + LT + F+ G ++ A +++ LV+ P+ FL G+ + ++ LP +Q Sbjct: 148 LYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQ 207 Query: 197 AVSHFNPVLYLVSGFRWSFYG--IADVNPATSLSMITVFLAICLGT 240 + F P+ + + R G + DV I + + L T Sbjct: 208 TAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLST 253
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 26.8 bits (59), Expect = 0.010 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 1 MMARFAAVLLVPLLAAPAVNAASITNTD 28 M + A+++ LLAA A +AA I N D Sbjct: 1 MKRKVLALVIPALLAAGAAHAAEIYNKD 28
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.3 bits (71), Expect = 0.021 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 31/191 (16%) Query: 281 FWSTLIRTLALAVLLVTSFFFLNSF----NVLRPDIAPVIGALFGTIGLVYFVGRFV--N 334 +TLI T+A+ V+L+ +F L +F N L + + IGL+ V N Sbjct: 362 MRATLIPTIAVPVVLLGTFAILAAFGYSINTL------TMFGMVLAIGLLVDDAIVVVEN 415 Query: 335 AIFAPSEPHWRLVKLSNLGARSIGYCLSAMAVVNGLDYL----FGTVSEAMGSPLVLTVV 390 E + + I L +A+V ++ FG + A+ +T+V Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 391 RSLIAALIIGIILI---AVSFSKPMLARSGDP------------DAPGRHWPRGMAIILR 435 ++ ++++ +IL + KP+ A + D H+ + IL Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 535 Query: 436 VVGAALIVTAL 446 G L++ AL Sbjct: 536 STGRYLLIYAL 546
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 3e-09 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 11 RGGIDAVVLDHLLSGETGLDILPCITSVPDHPPVIYATGSDDTSIAVAALKAGADDYMLK 70 G D VV D ++ E D+LP I PV+ + + A+ A + GA DY+ K Sbjct: 45 AGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPK 104 Query: 71 GISADYFDLLAAALEQALERARFRRETAQAQ 101 L + +AL + R + Sbjct: 105 PFDLTE---LIGIIGRALAEPKRRPSKLEDD 132
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 120 bits (302), Expect = 2e-31 Identities = 92/414 (22%), Positives = 173/414 (41%), Gaps = 16/414 (3%) Query: 106 RQAKIVALVVAVSFFMQILDGTIVATSLPQMAASFGVQPVSMSIGITVYMLTMAAFIPLS 165 R +I+ + +SFF +L+ ++ SLP +A F P S + T +MLT + + Sbjct: 11 RHNQILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 166 GWLGDRFGARRVFLASIGVFTGASLFCGLSGSLTEF-VLWRALQGAGSALMTPVGRIIVL 224 G L D+ G +R+ L I + S+ + S ++ R +QGAG+A + ++V Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129 Query: 225 KNARKSELVQAIALITWPALTAPVVGPVLGGFITTYASWHWNFLINIPIGIIGMGLVQRF 284 + K +A LI VGP +GG I Y HW++L+ IP+ I Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHY--IHWSYLLLIPMITIITVPFLMK 187 Query: 285 VPEQREADPGRLDILGFILSAAGLTLLLAALELSVKWEGGLWPVISMLAAGIVLSVVATR 344 + ++ G DI G IL + G+ + L + ++S+L+ I + Sbjct: 188 LLKKEVRIKGHFDIKGIILMSVGIVFFM----LFTTSYSISFLIVSVLSFLIF-----VK 238 Query: 345 HFLAVDNPLLDLSAFRVQTFSMSTLSAGTACRTAINATPFLLPLLFQLGFGLSSIAAGT- 403 H V +P +D + F + L G + ++P + + LS+ G+ Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGII-FGTVAGFVSMVPYMMKDVHQLSTAEIGSV 297 Query: 404 YLLVYFLGNFSMKAVTTPLLRFFGFRTVLGLNGLIAALSIVACGFLTPETPPFFIHALLF 463 + + + L+ G VL + ++S + FL T F ++F Sbjct: 298 IIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVF 357 Query: 464 LAGLSRSMEFTALNTLAFADIGPAQRSSASTLSSMLQQVSMLLGVAMAAAVLNI 517 + G S T ++T+ + + + + +L + +S G+A+ +L+I Sbjct: 358 VLG-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 78.1 bits (192), Expect = 2e-18 Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 30/200 (15%) Query: 33 PAVSRIE-RFGGRQGHGSGFAVSPDGLIITNSHVVDDA--KVVRIT----------TPDG 79 V+ I+ SG V D ++TN HVVD + P+G Sbjct: 88 APVTYIQVEAPTGTFIASGVVVGKD-TLLTNKHVVDATHGDPHALKAFPSAINQDNYPNG 146 Query: 80 FVTEGRVLGRDIDTDIALIRANASTGA--------WARLGDSQRLRRGHIAIAIGNPLGF 131 T ++ + D+A+++ + + A + ++ + G P Sbjct: 147 GFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK 206 Query: 132 EWTVTAGIVSALGRSMRAASGRLMEDVIQTDAALNPGNSGGPLVSSGGEVIGVNTAVIQG 191 + + S + L + +Q D + GNSG P+ + EVIG++ + Sbjct: 207 PV-------ATMWES-KGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPN 258 Query: 192 AQSIAFAVASNTANFVVSEI 211 + A + N NF+ I Sbjct: 259 EFNGAVFINENVRNFLKQNI 278
>cloacin#Cloacin signature. Length = 551 Score = 41.2 bits (96), Expect = 4e-06 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 7/59 (11%) Query: 35 GGGGGGNGGGG-------GGHGGGGGDHGGGGGGNGGGSGGGNGGGSHSSGGGKGSSSS 86 G GGG + G G G G G G H GGG G+G G G GN GG +GG + ++ Sbjct: 28 GVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAA 86 Score = 40.1 bits (93), Expect = 9e-06 Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 11/105 (10%) Query: 35 GGGGGGNGGGGGGHGGG--------GGDHGGG---GGGNGGGSGGGNGGGSHSSGGGKGS 83 GG G GGG G G GG G G GGG+G G+GGGNG SG G Sbjct: 22 GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81 Query: 84 SSSGGKTEIGHGSNKSSGKTGQANTTKQSVTTKGGAKKTTSVKAP 128 S+ G + + G G A + + A ++K P Sbjct: 82 SAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGP 126 Score = 36.2 bits (83), Expect = 2e-04 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 37 GGGGNGGGGGGHGGGGGDHGG--GGGGNGGGSGGGNGGGSHSSGGGKGSSSSGGKTEIGH 94 GG G G G H G +GG G G GG S G ++ GG S GH Sbjct: 3 GGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGH 62 Query: 95 GSNKSSGKTGQANTT 109 G+ +G +G + T Sbjct: 63 GNGGGNGNSGGGSGT 77 Score = 31.2 bits (70), Expect = 0.006 Identities = 16/40 (40%), Positives = 20/40 (50%) Query: 26 TDTSPAFAKGGGGGGNGGGGGGHGGGGGDHGGGGGGNGGG 65 ++ +P G G GGG G GGG + GGG G GG Sbjct: 41 SENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGN 80
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 34/186 (18%) Query: 275 RRRLLDDVARLAETAEQLLDFERNDQATDLHETVDLVEIARTVVADLAPLAIGAGYQITF 334 R +L+D + E L + R V L + V + L +I ++ F Sbjct: 183 RALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQFEDRLQF 242 Query: 335 QSEVESVKRKGSPSALPRAVSNLL-----RNAIDHG----GGGGMITVSVSAAGG-GRIS 384 ++++ P+ + V +L N I HG GG I + + G + Sbjct: 243 ENQIN-------PAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 385 VADEGPGIAAEHRELVFEPFYRVTPKSKGAGLGLSLVKQ-IVLNHGGE--VRIERRAAGA 441 V + G +E G GL V++ + + +G E +++ + Sbjct: 296 VENTGSLALKNTKE--------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 442 EVAIQL 447 + + Sbjct: 342 NAMVLI 347
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 9/169 (5%) Query: 2 RILLIEDERELAGALSAALGKHGIVTDHTMHLGDAVELTRQNHYDAILLDRRLPDGEGLR 61 IL+ +D+ + L+ AL + G T + D ++ D +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 FIPELRRTGRDTPIIVLTALNEPKQRVEGLDLGADDYLGKPFLVEELMARLRAVLRRQPN 121 +P +++ D P++V++A N ++ + GA DYL KPF + EL+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA------ 118 Query: 122 LSELKITAGRMVIDPLHLSVTVGDTPLDLPRRELLVLAALAKRKEKTVL 170 L+E K ++ D VG + +E+ + A + + T++ Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSA---AMQEIYRVLARLMQTDLTLM 164
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.9 bits (238), Expect = 5e-26 Identities = 66/255 (25%), Positives = 108/255 (42%), Gaps = 23/255 (9%) Query: 5 KTVIVTGASQGIGAGLVNAFVERGYNVVATSRQVSASDALNASDRLAV-----VDGDIGD 59 K +TGA+QGIG + +G ++ A + + +S + D+ D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 60 PETAARVAKAAIDRFGSIDALVNNAGIFLTKPFIDYTMTDFRKLSSTNLEGFIHLTQLVI 119 + G ID LVN AG+ + ++ S N G + ++ V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 120 RQMLVQKTGGSIVSITTPLIDHPIAGFSASVSMMTKGGIDAISKNLAMEYASDGIRVNTV 179 + M+ ++ GSIV++ + P +A S +K +K L +E A IR N V Sbjct: 129 KYMMDRR-SGSIVTVGSNPAGVPRTSMAAYAS--SKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 180 APGVVDTPLHK-----DNPK--------EFLKTLSPMSGISDVAEIVDAVVFLT--EAPR 224 +PG +T + +N E KT P+ ++ ++I DAV+FL +A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 225 VTGEVLHVDGGAHLG 239 +T L VDGGA LG Sbjct: 246 ITMHNLCVDGGATLG 260
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 37.6 bits (87), Expect = 1e-04 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 3/125 (2%) Query: 406 LSIDPRDPDGLQARARYRESYEGDTKGALADLSRSLADMPGSSMNWNDLGLLQSDRGANG 465 I + L + A + + G + A S + LG + G Sbjct: 29 NEISSDTLEQLYSLA-FNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYD 87 Query: 466 EAEAAFLKAIELDPEDPAPHANLAILYLDQSRMKEAKREIDTA--LAVDPSFDIALLARG 523 A ++ +D ++P + A L + + EA+ + A L D + L R Sbjct: 88 LAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRV 147 Query: 524 RYYLQ 528 L+ Sbjct: 148 SSMLE 152
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.9 bits (93), Expect = 3e-06 Identities = 20/89 (22%), Positives = 40/89 (44%) Query: 212 VGSILVTNSGDGIAKLRLLYVDKSARGLGLGKLLVDECIRFARQKGYRQLSLWTNDMLET 271 +G I + ++ +G A + + V K R G+G L+ + I +A++ + L L T D+ + Sbjct: 77 IGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINIS 136 Query: 272 ARGIYIKAGFRLVSEERHKMFGPEANGQT 300 A Y K F + + + + Sbjct: 137 ACHFYAKHHFIIGAVDTMLYSNFPTANEI 165
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.4 bits (159), Expect = 2e-15 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 5/175 (2%) Query: 10 QKTRSRGRPREFDMDAALDAALLVFSERGYHATSISELTEAMGLASGSIYKAFKDKRGIF 69 +KT+ + LD AL +FS++G +TS+ E+ +A G+ G+IY FKDK +F Sbjct: 3 RKTKQEAQETR---QHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59 Query: 70 VAAFAR-YRKLGRRRLEAMIASAETGREKVFQMVMYYTELSHGEAGRKGCLVVGGANDFA 128 + +G LE + +++++ E + E R+ + + Sbjct: 60 SEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 129 LLDDETAAHVVTAFAADEK-LMADLIRIGQADHTIPKTVDPDAAALAFLCLTKGL 182 + + + + ++ +P + AA+ GL Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.3 bits (76), Expect = 0.002 Identities = 57/371 (15%), Positives = 110/371 (29%), Gaps = 51/371 (13%) Query: 45 ISADLGFSPAATGLIVTLTQIGYGLGLLLIVPLGDLTENRRLVLLLIAVSAVALIGAAVS 104 I+ D PA+T + T + + +G + L D +RL+L I ++ + V Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 105 TTPAMFLTAS---LSIGLASVAVQVLVPFAANMAPDATRGQVVGNVMSGLLCGIMLARPF 161 + L + G A+ V+V A + RG+ G + S + G + Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK-ENRGKAFGLIGSIVAMGEGVGPAI 158 Query: 162 ASFVAEASSWHMVYYVTAALMLVLAIVLRANLPVRVPKTK-----------------LGY 204 +A W Y + ++ ++ + L + + K Sbjct: 159 GGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 205 GELLGSMAHLALTSRVL------QRRA-------------LYQAGMFGAFSLFWTTTPLL 245 S++ L ++ R+ + G+ +F T + Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 246 LASPAFGLTQNGIALFAL-------AGAAGAVASPIAGRLADRGMTKIASTIAMLLGMAS 298 P + ++ + + + I G L DR I + S Sbjct: 277 SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336 Query: 299 FLISHFAADGSLTALILLTGAAIMLDFGVTTNLVCGQRAIYGLNPEHRSRLNGLFMATFF 358 FL + F + + + +L T V L + L T F Sbjct: 337 FLTASFLLETTS--WFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394 Query: 359 TGGAIGSALGG 369 G A+ G Sbjct: 395 LSEGTGIAIVG 405
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 35.9 bits (83), Expect = 1e-04 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 24/128 (18%) Query: 4 TILVTGAAGQLGQRVIHHLIETYKVAPARIVA---------ATRSPEKLAELANKGVVTR 54 LVTGAAG +G H+ + A ++V + +L LA G Sbjct: 2 KYLVTGAAGFIG----FHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFH 57 Query: 55 KADFDDAASLEKAFA--GVDRLLIISTDA-----LDTPGK----RLTQHKAAVAAAVKAG 103 K D D + FA +R+ I L+ P LT + Sbjct: 58 KIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 104 VKHIAYTS 111 ++H+ Y S Sbjct: 118 IQHLLYAS 125
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 105 bits (264), Expect = 3e-29 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 11/125 (8%) Query: 107 LNMPSNITFDVDQDAVKPGFYPTLNSVAIVLRKFNRTL--IDVNGHTDSTGSLQHNQDLS 164 + S++ F+ ++ +KP L+ + L + + V G+TD GS +NQ LS Sbjct: 215 FTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLS 274 Query: 165 QRRALSVADYLGGQGIDQRRVSAVGFGPSQPVASNASEAGR---------AQNRRVEIQI 215 +RRA SV DYL +GI ++SA G G S PV N + + A +RRVEI++ Sbjct: 275 ERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334 Query: 216 APITQ 220 I Sbjct: 335 KGIKD 339
>FLAGELLIN#Flagellin signature. Length = 507 Score = 77.8 bits (191), Expect = 6e-18 Identities = 47/295 (15%), Positives = 88/295 (29%), Gaps = 14/295 (4%) Query: 36 VAKAADNAVYWSIATTARTDNKAISAIQDALGMAAATMGTAYTGVQNVIDVVSEIKAKLV 95 V A N + T + G A A D Sbjct: 227 VYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFT 286 Query: 96 AATENGVDKNKINEELKQLQEQLRSVSESATFNSDNWVILNNDATPTQPRQIPASFIRNS 155 T+ G D N ++ +V++ ++ + + S + Sbjct: 287 IDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSK-----NVYTSVVNGQ 341 Query: 156 DGTVSIGMLSYHIDNTPVGATSSKDARYLIDDRATGSGEYGVLTSAYFATELGTAQNYVL 215 S +A + + + G +A A + T + Sbjct: 342 FTFDDKTKNES-------AKLSDLEANNAVKGESKITVN-GAEYTANAAGDKVTLAGKTM 393 Query: 216 MTSKNGTTAGQVVISLSAATTQGQIGEMISVVDAALTQLTTVGSAFGALEKRIELQNDFA 275 K + ++ +AA + ++ +D+AL+++ V S+ GA++ R + Sbjct: 394 FIDKTASGVSTLINEDAAAAKKS-TANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNL 452 Query: 276 TQLHDNITAGIGRLVDADMEEESSRLRALQTQQQLGLQSLNIANATYDTVRQLFQ 330 N+ + R+ DAD E S + Q QQ G L AN V L + Sbjct: 453 GNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507 Score = 75.1 bits (184), Expect = 4e-17 Identities = 46/329 (13%), Positives = 97/329 (29%), Gaps = 12/329 (3%) Query: 1 MSIYQRVSVDAALHVLRDINRNMTVTQNHITTGMRVAKAADNAVYWSIATTARTDNKAIS 60 I + L +++ +++G+R+ A D+A +IA ++ K ++ Sbjct: 2 QVINTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLT 61 Query: 61 AIQDALGMAAATMGT---AYTGVQNVIDVVSEIKAKLVAATENGVDKNKINEELKQLQEQ 117 + T A + N + V E+ + T + D I +E++Q E+ Sbjct: 62 QASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEE 121 Query: 118 LRSVSESATFNSDNWVILNNDATPTQPRQIPAS---FIRNSDGTVSIGMLSYHIDNTPVG 174 + VS FN + Q+ A+ I + + L N Sbjct: 122 IDRVSNQTQFNGVKVL----SQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGP 177 Query: 175 ATSSKDARYLIDDRATGSGEYGVLTSAYFAT--ELGTAQNYVLMTSKNGTTAGQVVISLS 232 ++ TG Y V + Y + T + L+ Sbjct: 178 KEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLT 237 Query: 233 AATTQGQIGEMISVVDAALTQLTTVGSAFGALEKRIELQNDFATQLHDNITAGIGRLVDA 292 + + + + GA++ E + I G + Sbjct: 238 TDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNG 297 Query: 293 DMEEESSRLRALQTQQQLGLQSLNIANAT 321 + + + T + + N+ AT Sbjct: 298 KVSTTINGEKVTLTVADITAGAANVDAAT 326
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 730 bits (1885), Expect = 0.0 Identities = 314/1035 (30%), Positives = 512/1035 (49%), Gaps = 40/1035 (3%) Query: 20 LFVRRPILALVFNTLMVVAGLAAYVGVEVRELPDVDRPVVTVRTTFDGASPQTIDQELTK 79 F+RRPI A V ++++AG A + + V + P + P V+V + GA QT+ +T+ Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQ 63 Query: 80 VIEGAVARVSGLKSISSTS-SFGQSRVTLEFTDAIDLAVAANDVRDAIGRITQNLPDEAD 138 VIE + + L +SSTS S G +TL F D +A V++ + T LP E Sbjct: 64 VIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQ 123 Query: 139 APQIVKADSDSSAIMRLAVTSTKLNM--DDLTQLVENEVIDRLASVDGVADVEEYGDQEK 196 I S SS +M S DD++ V + V D L+ ++GV DV+ +G + Sbjct: 124 QQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQY 182 Query: 197 VFRVDVDQGALASRGLTIGDLTKALDNAALDVPAGSLKST------TQDIVVRATANLQT 250 R+ +D L LT D+ L + AG L T + + A + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 251 PADFSKVILQ-----DRVRLGDVATVTLGPRDGDTALRSNGKPGIGLGIIRQAQSNTLNI 305 P +F KV L+ VRL DVA V LG + + R NGKP GLGI +N L+ Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 306 STGIKAAVEQLSKTLPEGTTIAITSDDAVFIQGAIHEVVLALALAAVIVTAVIYLFLRDW 365 + IKA + +L P+G + D F+Q +IHEVV L A ++V V+YLFL++ Sbjct: 303 AKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 366 RATLIPAVSMPVALIGTLAAIYMVGFSINILTLLAIVLATGLVVDDAIVVLENIVRRRAE 425 RATLIP +++PV L+GT A + G+SIN LT+ +VLA GL+VDDAIVV+EN+ R E Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 426 -GMGPRAAAVLGTREVFFAVIATTATLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSS 484 + P+ A ++ A++ L+AVFIP++F G G ++R+F + ++ LS Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 485 IVALTLCPMLASRMLTKPMIEDHGALGRVGGAFANLYKWALHG-------CLNAPFVIIL 537 +VAL L P L + +L E H G G F + +++ L + +L Sbjct: 483 LVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLL 542 Query: 538 FSVMFAGAALIAFSTVKSELTPEEDRSLVMMRLTTPQGSSLEYTRDKMQLVEEYLQPLVD 597 + ++ F + S PEED+ + + + P G++ E T+ + V +Y + Sbjct: 543 IYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK-NE 601 Query: 598 SGDIRNVFSISG---QGGSLNSGFMVLTLAPWGERHR---TQAEIVGDINQAAAKVPALR 651 ++ +VF+++G G + N+G ++L PW ER+ + ++ K+ Sbjct: 602 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIR--D 659 Query: 652 GNAISSNSLRIR--GAGSGVQMALV---GNDHQALTAAAAKLV-QALDATGQYDTPRLTN 705 G I N I G +G L+ G H ALT A +L+ A + R Sbjct: 660 GFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNG 719 Query: 706 EPSQAQVSVAIDRERASDLGIDITGLSTAIQSLLEGRSVVDVFVDGESYPVLLTSTTRPI 765 AQ + +D+E+A LG+ ++ ++ I + L G V D G + + + + Sbjct: 720 LEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFR 779 Query: 766 DDPTDLENVFLKTGDGKIVPMSVIASMKEGSVAPQLNREQQLASVAITAGLRNGMSLGDA 825 P D++ +++++ +G++VP S + +P+L R L S+ I G S GDA Sbjct: 780 MLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDA 839 Query: 826 VKQVTELAEPLLPPGARLLPLAEAATLEENSSGMALTFGFAIIIIFLVLAAQFESVLSSL 885 + + LA LP G + + + + +++FL LAA +ES + Sbjct: 840 MALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPV 898 Query: 886 IIMSTVPLGLACAVFALIITGSSLNIYSQIGLVLLVGVMAKNGILIVEFANQLRDR-GED 944 +M VPLG+ + A + ++Y +GL+ +G+ AKN ILIVEFA L ++ G+ Sbjct: 899 SVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 958 Query: 945 VRSSIEKACALRLRPVMMTMIATILGGVPLVFAHGAGAEARVALGWVIVGGLGFATLVTL 1004 V + A +RLRP++MT +A ILG +PL ++GAG+ A+ A+G ++GG+ ATL+ + Sbjct: 959 VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018 Query: 1005 FITPVAYLLLARFAK 1019 F PV ++++ R K Sbjct: 1019 FFVPVFFVVIRRCFK 1033 Score = 92.2 bits (229), Expect = 6e-21 Identities = 85/529 (16%), Positives = 186/529 (35%), Gaps = 50/529 (9%) Query: 529 LNAPFVIILFSVMFAGAALIAFSTVKSELTPEEDRSLVMMRLTTPQGSSLEYTRDKMQLV 588 + P + +++ A +A + P V + P G+ + + Sbjct: 6 IRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQ------TVQ 58 Query: 589 EEYLQPLVDS-GDIRNVFSISGQGGSLNSGFMVLTLAPWGERHRTQAEIVGDINQAAAKV 647 + Q + + I N+ +S S S + LT + Q ++ + A + Sbjct: 59 DTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLL 118 Query: 648 PALRGNAISSNSLRIRGAGSGVQMALV------GNDHQALTAAAAKLVQALDATGQYDTP 701 P + + + + S M G ++ A V+ Sbjct: 119 P----QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK----------D 164 Query: 702 RLTNEP---------SQAQVSVAIDRERASDLGIDITGLSTAIQS----LLEGRSVVDVF 748 L+ +Q + + +D + + + + ++ + G+ Sbjct: 165 TLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPA 224 Query: 749 VDGESYPVLLTSTTRPIDDPTDLENVFLKTG-DGKIVPMSVIASMKEGSVAPQ-LNREQQ 806 + G+ + + TR +P + V L+ DG +V + +A ++ G + R Sbjct: 225 LPGQQLNASIIAQTR-FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARING 283 Query: 807 LASVAITAGLRNG---MSLGDAVKQVTELAEPLLPPGARLLPLAEAATLEENS-SGMALT 862 + + L G + A+K +P P G ++L + + S + T Sbjct: 284 KPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKT 343 Query: 863 FGFAIIIIFLVLAAQFESVLSSLIIMSTVPLGLACAVFALIITGSSLNIYSQIGLVLLVG 922 AI+++FLV+ +++ ++LI VP+ L L G S+N + G+VL +G Sbjct: 344 LFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIG 403 Query: 923 VMAKNGILIVE-FANQLRDRGEDVRSSIEKACALRLRPVMMTMIATILGGVPLVFAHGAG 981 ++ + I++VE + + + + EK+ + ++ + +P+ F G+ Sbjct: 404 LLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGST 463 Query: 982 AEARVALGWVIVGGLGFATLVTLFITPV-AYLLLARFAKPHAHEEARLH 1029 IV + + LV L +TP LL + H + Sbjct: 464 GAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFF 512
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 18/99 (18%), Positives = 41/99 (41%) Query: 110 RSVAVTPQASGTIREILIKSGDRVKAGQVLAKLDSEEQVIARGQADVAVKAAVEKSNLYH 169 RS + P + ++EI++K G+ V+ G VL KL + + ++ A + Y Sbjct: 95 RSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQ 154 Query: 170 NIKSSVSRMDVFDSEIAEQGARLQLQAAELNLARRNITA 208 + S+ + + ++ ++ + E+ I Sbjct: 155 ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKE 193 Score = 41.4 bits (97), Expect = 5e-06 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 15/94 (15%) Query: 181 FDSEIAEQGARLQLQAAEL---------NLARRNITAPIDGIVGIVPVN-IGDNVTTTTP 230 F +EI ++ + L I AP+ V + V+ G VTT Sbjct: 296 FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355 Query: 231 ---IVTLDDRSEILVDFWVPERFSNTVEVGQPVE 261 IV DD + V V + + VGQ Sbjct: 356 LMVIVPEDDT--LEVTALVQNKDIGFINVGQNAI 387
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.002 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 7/108 (6%) Query: 50 YQTIEEVRKRIENSSPGALNLVVTLNGKIVGNGGLHRLAGRRQHVASLGMGVHDDFTGRG 109 Y+ + +E A + L +G + + + V D+ +G Sbjct: 50 YEDDDMDVSYVEEEGKAAF--LYYLENNCIGRIKIRSNWNGYALIEDIA--VAKDYRKKG 105 Query: 110 FGRILLGAIVE-AADDWLAVKRLELTVYTDNDAAIGLYEKFGFEREGL 156 G LL +E A ++ LE N +A Y K F + Sbjct: 106 VGTALLHKAIEWAKENHFCGLMLETQ--DINISACHFYAKHHFIIGAV 151
>INTIMIN#Intimin signature. Length = 939 Score = 30.0 bits (67), Expect = 0.041 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 4/63 (6%) Query: 599 IEGIGEVVARAMVEFYKEPR----NVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTVVFTG 654 + + V VEF+ N+E++G + P Q +G +T Sbjct: 736 VSDVAVDVKAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTW 795 Query: 655 SLE 657 Sbjct: 796 RSA 798
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 5e-04 Identities = 26/226 (11%), Positives = 66/226 (29%), Gaps = 16/226 (7%) Query: 326 AAERNFQPVAKPAIRPSAAVAPAAAAVQPAPVMQAPK------------VSDPIAQTIRQ 373 + N + +A+ P APA + V + K ++ AQ Sbjct: 1009 SVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREV 1068 Query: 374 VEMERELEISAPRASAPVQQPAAQQEVFRPQSKIFAPAQEAPAIRPQVQQQAPTPVMSQP 433 + + + + + Q + +E ++K A ++ + + ++ P ++ Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQ 1128 Query: 434 VMSQPVQQQPIQQQPVRQEPIIRQAAEPVRMPKVEDFPPVVQAELDHRTQPASAHSQEER 493 V P Q+Q QP + ++ P+ + + T E Sbjct: 1129 V--SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTES 1186 Query: 494 GPMGLLKRITNSLGRRDDDAVAADMTAAPP--AASQQRRPLSPEAS 537 + + + + + ++ RR + Sbjct: 1187 TTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPH 1232 Score = 35.8 bits (82), Expect = 5e-04 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 11/172 (6%) Query: 324 SEAAERNFQPVAKPAIRPSAAVAPAAAAVQPAPVMQAPKVSDPIAQTIRQVEMERELEIS 383 E A+ V A + VA + + + + + + + +VE E+ E Sbjct: 1066 REVAKEAKSNV--KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQE-- 1121 Query: 384 APRASAPVQQPAAQQEVFRPQSKIFAPAQEAPAIRPQVQQQAPTPVMSQPVMSQPVQQQP 443 P+ ++ V Q E +PQ++ I+ Q T QP Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETS----S 1177 Query: 444 IQQQPVRQEPIIRQAAEPVRMPKVEDFPPVVQAELDHRTQ--PASAHSQEER 493 +QPV + + V P+ P Q ++ + P + H + R Sbjct: 1178 NVEQPVTESTTVNTGNSVVENPENTT-PATTQPTVNSESSNKPKNRHRRSVR 1228 Score = 33.9 bits (77), Expect = 0.002 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 319 IDRAISEAAERNFQPVAKPAIRPSAAVAPAAAAVQPAPVMQAPKVSDPIAQTIRQVEMER 378 + ++ SE E Q + A V+ + PKV+ ++ Q E + Sbjct: 1085 VAQSGSETKET--QTTETK--ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ 1140 Query: 379 ELEISAPRASAPVQQPAAQQEVFRPQSKIFAPAQEAPA-IRPQVQQQAPTPVMSQPVMSQ 437 + R + P Q + PA+E + + V + + V + Sbjct: 1141 P-QAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN- 1198 Query: 438 PVQQQPIQQQPVRQE 452 P P QP Sbjct: 1199 PENTTPATTQPTVNS 1213
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 46.3 bits (110), Expect = 1e-07 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 26/211 (12%) Query: 189 ERSALKNLELSVNRAHLSVEGIVATPYASGLAALVDDEVELGCAAIDMGGGTTTISVFAE 248 ER A++ S A ++ P A+ + A + G +D+GGGTT ++V + Sbjct: 122 ERRAIRE---SAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISL 178 Query: 249 GKLVHTDAVGLGG----HHVTTDLAR--GLSTRIEDAERLKVVHASALLNSSDERELISI 302 +V++ +V +GG + + R G AER+K SA DE I + Sbjct: 179 NGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAY--PGDEVREIEV 236 Query: 303 PPIGEDDRDQPSQVPRALV--SRIVSARIEETMELIRDRIQRS-------GFSPIVGKRV 353 R+ VPR S + ++E + I + + S I + + Sbjct: 237 R-----GRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGM 291 Query: 354 VLTGGASQLTGLAEVARRILARNVRIG-RPM 383 VLTGG + L L + V + P+ Sbjct: 292 VLTGGGALLRNLDRLLMEETGIPVVVAEDPL 322
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 28.3 bits (63), Expect = 0.023 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 21 LSSGKACAEALEAEGFKVTTLDVARDVSEKLAALK 55 + + + L+ +G+ VT V+RD+ E L +K Sbjct: 19 IETQDELVDILKKDGYNVTQATVSRDIKE-LHLVK 52
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 99.9 bits (249), Expect = 3e-26 Identities = 66/352 (18%), Positives = 117/352 (33%), Gaps = 69/352 (19%) Query: 1 MRCLVTGAAGFVGSPLVKRLHAEKIYDLVATTRSQTPAFPPEVAHFPIEITGGTDWT--- 57 M+ LVTGAAGF+G + KRL V + + + +E+ + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEA--GHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHK 58 Query: 58 ------------AALEGVDVIVHLAA----RVHIMNDRAADPLAEFRRTNTAAALNLAEQ 101 A + + R + N A + +N LN+ E Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHA------YADSNLTGFLNILEG 112 Query: 102 AASAGVKRFVFVSTIKVNGEENDRPFRHDDR-PKPIDPYGISKLECEIGLREIAARTGME 160 ++ ++ S+ V G PF DD P+ Y +K E+ + G+ Sbjct: 113 CRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLP 172 Query: 161 VVIIRPPLVYGPGARGNFALLVNLVRKKLPLPFASLKNH----RTLVAVQNLVDLIIACA 216 +R VYGP R + AL + L + N+ R + ++ + II Sbjct: 173 ATGLRFFTVYGPWGRPDMALF-KFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231 Query: 217 THPA-----------------APGEIFLAGDGEDLSTPALIRGIAAGLGV--KPMLVPFP 257 AP ++ G+ + I+ + LG+ K ++P Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ 291 Query: 258 PALLQMAAKALGKEAVYQRLCGSLQVDITRARDVLGWSPVVTPREGLKLAVE 309 P V + D +V+G++P T ++G+K V Sbjct: 292 PG------------DVLETSA-----DTKALYEVIGFTPETTVKDGVKNFVN 326
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 455 bits (1172), Expect = e-164 Identities = 158/331 (47%), Positives = 214/331 (64%), Gaps = 1/331 (0%) Query: 1 MRYFITGTAGFIGFHLARRLLQEGHEVTGFDGLTPYYNVKLKEMRHAALSQFPAFRPVIS 60 M+Y +TG AGFIGFH+++RLL+ GH+V G D L YY+V LK+ R L+ P F+ Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKI 59 Query: 61 MLEDRPALEAAVSAAAPDILIHLAAQAGVRYSLENPEAYIHSNVEGSWNIMEIARRVEVR 120 L DR + ++ + + + VRYSLENP AY SN+ G NI+E R +++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 121 HLMLASTSSIYGANATVPFRETDRADEPLTIYAATKKSMELMAHSYAHLHKIPTTAFRFF 180 HL+ AS+SS+YG N +PF D D P+++YAATKK+ ELMAH+Y+HL+ +P T RFF Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 181 TVYGPWGRPDMALFKFAKNMLEGQPIEIYGEGNMSRDFTYIDDLIEAIVRLSAIAPSEEN 240 TVYGPWGRPDMALFKF K MLEG+ I++Y G M RDFTYIDD+ EAI+RL + P + Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 241 RLGDAGIETLSRQAPFRVVNIGGGQPVSLMDFVETVEKALGRRAIRKMLAMQKGDVPRTF 300 + + AP+RV NIG PV LMD+++ +E ALG A + ML +Q GDV T Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLETS 299 Query: 301 AAPDLLVALTGYKPDTTLDVGVEAFVDWYID 331 A L + G+ P+TT+ GV+ FV+WY D Sbjct: 300 ADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 6e-12 Identities = 21/89 (23%), Positives = 36/89 (40%) Query: 11 PASARAEIARQKMLTAALDVFGRYGFEGASTRQLTEAAGVNLQAIPYYFGSKEGLYIATA 70 A+ RQ +L AL +F + G S ++ +AAGV AI ++F K L+ Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 71 EYLMMQIDSHVSGMRARIGAHLMALDAAG 99 E I +A+ +++ Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREI 92
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 77.6 bits (191), Expect = 6e-18 Identities = 46/255 (18%), Positives = 79/255 (30%), Gaps = 29/255 (11%) Query: 92 EANAAALRATLDKLKAGPRPTEIAQARAAYDESLADLQN--ANLAYDRARQLRPQGTISE 149 E N RA + A E L D + A + L + E Sbjct: 206 ELNLDKKRAERLTVLARINRYE--NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVE 263 Query: 150 ANLDQATAAKAMAAARSQSASEALKLLQEGSRV-----EDIAAADAQLKAAEATLASART 204 A + + S+ S + + + + LA Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE 323 Query: 205 SLADTELRAPNDGVILS-RVRENGAIVSPADTVFVLSLT-EPVWVRSYVAEPDLGRIHPG 262 + +RAP + +V G +V+ A+T+ V+ + + V + V D+G I+ G Sbjct: 324 RQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVG 383 Query: 263 MKVSIASDTRPDRPY---EGTIGFVSPVAEFTPKSVETPELRTDLVYRLRIVIDTPGP-- 317 I + P Y G + ++ A + R LV+ + I I+ Sbjct: 384 QNAIIKVEAFPYTRYGYLVGKVKNINLDA--------IEDQRLGLVFNVIISIEENCLST 435 Query: 318 -----DLRQGMPVTV 327 L GM VT Sbjct: 436 GNKNIPLSSGMAVTA 450
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 34.5 bits (79), Expect = 4e-04 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 19/180 (10%) Query: 203 AREWERGTMEAMMATPVTAVELLAGKILPYFLLGLTSMTLCVLLAVFLFGVPFRG----- 257 R + T EAM+ T + +++ G++ + ++A L + Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYAL 151 Query: 258 ---SVAGLYALSAAFLIPALGQGLLISTATKNQFLASQLALISAFLPAFLLSGFLFEINS 314 ++ GL S ++ AL + + P LSG +F ++ Sbjct: 152 PVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVIT----------PILFLSGAVFPVDQ 201 Query: 315 MPRIIQWITFIVPARYLIPSLQTVFLAGDIWPMFGQAISVMLTIGGVMFALAARSTRKRI 374 +P + Q +P + I ++ + L + Q + + + F L+ R+R+ Sbjct: 202 LPIVFQTAARFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVIPFFLSTALLRRRL 260
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 49.9 bits (119), Expect = 5e-09 Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 3/199 (1%) Query: 172 TYQWFMVPNLIASIALLIGLIVTAL-SIARERELGTFDQLMVSPLRLHEILIGKLIPPMM 230 +Y F+ ++A+ A+ T + R T++ ++ + LRL +I++G++ Sbjct: 64 SYTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAAT 123 Query: 231 IGLFHITVYILAAVFLFEVPLRGSLFLLYGSAIFYLGSVAGLGLFISALSMTQQQAILGA 290 + A L L+ L A+ L + A LG+ ++AL+ + I Sbjct: 124 KAALAGAGIGVVAAALGYTQWLSLLYALPVIALTGL-AFASLGMVVTALAPSYDYFIFYQ 182 Query: 291 FLFMVPAMLLSGFATPIENMPGWLQPITFVNPLRYFLVIVKGVFLKDIPLSEVVNQTIPL 350 L + P + LSG P++ +P Q PL + + +++ + L P+ +V L Sbjct: 183 TLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIML-GHPVVDVCQHVGAL 241 Query: 351 ALIATVTLSAAAWLFRRRL 369 + + + L RRRL Sbjct: 242 CIYIVIPFFLSTALLRRRL 260
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 33.0 bits (75), Expect = 3e-04 Identities = 15/43 (34%), Positives = 24/43 (55%) Query: 14 SSLATNALADGAVTGAAGGAITGAIVGGPVGAAIGGVAGGVAG 56 +SL T + +V+ A T ++VG PV A +G V G ++G Sbjct: 366 ASLTTISTVLASVSSGISAAATTSLVGAPVSALVGAVTGIISG 408
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 2e-11 Identities = 25/135 (18%), Positives = 49/135 (36%) Query: 29 RKKQPALVRQQLLEVAARLAASDGMAAVTLDAVSSASSVSKGGLLHHFPTKNALLDALFE 88 K++ RQ +L+VA RL + G+++ +L ++ A+ V++G + HF K+ L ++E Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 89 SLLEKFDVDIEELMRGDPQPQGRFTRAYLRAVSGLKDRPDDSRSWTQVTIALLAEPRLRL 148 E P R L V + R ++ Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 149 RWRRWVQARAEEYVG 163 ++ + E Sbjct: 125 VVQQAQRNLCLESYD 139
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.5 bits (66), Expect = 0.002 Identities = 13/32 (40%), Positives = 17/32 (53%) Query: 67 KLVIIDHTAVPDALRGKGVGQALALHAVESAR 98 +I+ AV R KGVG AL A+E A+ Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAK 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 2 RVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGYE 61 +L+ +DD+A + L ++V T D D+++ D+ +PD + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARI-HAIVRRSK 120 +L ++ ++ P+L++S ++ GA DY+ KPF EL+ I A+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHAQ 124 ++ Sbjct: 125 RPSK 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 54.5 bits (131), Expect = 6e-12 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 1 MQRF---MITDNSDIVRKVGKRILSELDFLVSEASNAAEALQRCQTELPEYLIVDSGMEG 57 M + D++ I R V + LS + V SNAA + + ++ D M Sbjct: 1 MTGATILVADDDAAI-RTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 58 --ALDLIAAIRAMDGGKEVKIYYCVIEADLKKLMAGKRAGATDFLLKPFD 105 A DL+ I+ V + + + GA D+L KPFD Sbjct: 60 ENAFDLLPRIKKARPDLPVLV--MSAQNTFMTAIKASEKGAYDYLPKPFD 107
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 38.7 bits (90), Expect = 3e-05 Identities = 19/183 (10%), Positives = 51/183 (27%), Gaps = 9/183 (4%) Query: 28 QLRHDALAVDAGRLAAEIGELQAQIVEMHVEAAEQRSHLRKDENYISQLKTNLHIAEQSA 87 Q R+ L+ +L + +V E + S + + E + Sbjct: 150 QTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNL 209 Query: 88 ANKESELAAMRTRLSKLSEQADGLRIDLAARETEAE---SLKFRANALRDERDTLRQDVN 144 K +E + R+++ + + L + K ++ ++ Sbjct: 210 DKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELR 269 Query: 145 LLQKRARDAEQKLTQQQHMVIRLEDKAARESASAAEKETQLARRQQEIVKLKEQLKAANA 204 + + + E ++ + + E +L + I L +L Sbjct: 270 VYKSQLEQIESEILSAKEEYQLVTQLFKNEIL------DKLRQTTDNIGLLTLELAKNEE 323 Query: 205 EIR 207 + Sbjct: 324 RQQ 326
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 44.3 bits (104), Expect = 2e-06 Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 12/245 (4%) Query: 17 ENTPEMRVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAAIREV-EAEHSEALPLD 75 T E + + + K ++ + + +E E E ++ Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 76 EATDAGAAPETLEEQAVADESTSPPAPQTTVDEPAGEADVGSPTAEATREPDHLEADARQ 135 + A E +E SP Q+ +P E + +EP Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ--SQTNTT 1165 Query: 136 ETEEEVAAEEPLSAEPEPEQTPVSAETAAPVETYWHPSHEEEAPAEEWHAGEARDVAAEE 195 E+ A E + E ++ + VE P + A + + + Sbjct: 1166 ADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN---PENTTPATTQ-----PTVNSESSN 1217 Query: 196 MQPEHHGFETPPADHSYEEADEHRADEQHPVAAEEIAAEPAMAESHEPKAEAAYESIESF 255 H H+ E A D VA ++ + A + +A+A + ++ Sbjct: 1218 KPKNRHRRSVRSVPHNVEPATTSSNDRS-TVALCDLTSTNTNAVLSDARAKAQFVALNVG 1276 Query: 256 QPITR 260 + +++ Sbjct: 1277 KAVSQ 1281 Score = 36.2 bits (83), Expect = 7e-04 Identities = 61/354 (17%), Positives = 105/354 (29%), Gaps = 42/354 (11%) Query: 23 RVKVYERARGAVQRQLENMKPRPPEAMLQRQLEKLEAAIREVEAEHSEALPLDEATDAGA 82 +V V + A G Q+ + P +L +A+ + + +H + D GA Sbjct: 913 KVVVTKSATGNFTLQVADKTGEPN----HNELTLFDAS--KAQRDHLNVSLVGNTVDLGA 966 Query: 83 APETLE-----------EQAVADESTSPPAPQTTVDEPAGEADVGSPTAEATREPDHLEA 131 L E +++ T + A V S E R + Sbjct: 967 WKYKLRNVNGRYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDE---- 1022 Query: 132 DARQETEEEVAAEEPLSAEPEPEQTPVSAETAAPVETYWHPSHEEEAPAEEWHAGEARDV 191 A P + E T AE + + ++ + R+V Sbjct: 1023 ----------APVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETT----AQNREV 1068 Query: 192 AAEEMQPEHHGFETPPADHSYEEADEHR---ADEQHPVAAEEIAAEPAMAESHEPKAEAA 248 A E +T S E E + E V EE A PK + Sbjct: 1069 AKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKV-TS 1127 Query: 249 YESIESFQPITRGMEHASNRLVEPVADFDRAQEF--VEHSREEPLQADAAGHFDPVWAEP 306 S + Q T + R +P + Q E+P + ++ PV Sbjct: 1128 QVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTEST 1187 Query: 307 AVET-PAPAPKDAETEWAEQELRQYSETAPVTADASARAFEDVISSLEKMTPAA 359 V T + T A + SE++ + R+ V ++E T ++ Sbjct: 1188 TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSS 1241 Score = 32.3 bits (73), Expect = 0.011 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 16/136 (11%) Query: 513 QATRNEAAMTPAGSETPAQTTPT-PAQPAAP-EAQNTPPAPAQPNQQVASLNNDGAAANS 570 Q TP + + P+ + A EA PPAPA P++ + + S Sbjct: 990 QTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET-TETVAENSKQES 1048 Query: 571 KFTQRLLSDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPAASAQGDAAPPETLTPNG 630 K ++ D TE TA+ + VA++ A ++ A + + A + T Sbjct: 1049 KTVEKNEQDATE-----------TTAQNREVAKE--AKSNVKANTQTNEVAQSGSETKET 1095 Query: 631 PAASPQQAAPVGSSEK 646 ++ A V EK Sbjct: 1096 QTTETKETATVEKEEK 1111 Score = 32.3 bits (73), Expect = 0.011 Identities = 20/128 (15%), Positives = 41/128 (32%) Query: 513 QATRNEAAMTPAGSETPAQTTPTPAQPAAPEAQNTPPAPAQPNQQVASLNNDGAAANSKF 572 +A + +GSET T + A E + + Q+V + + + + Sbjct: 1077 KANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQS 1136 Query: 573 TQRLLSDGTEVDSGPATVPGTPTAEGKSVAEQNVAAADTPAASAQGDAAPPETLTPNGPA 632 ++ P P ++ + A+ A +T + Q T N Sbjct: 1137 ETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196 Query: 633 ASPQQAAP 640 +P+ P Sbjct: 1197 ENPENTTP 1204
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 1e-04 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 32 DDSFAFLEADPSGFFVGSVGEVPVGSISVVKYGDSFAFLGLYIVHPDFRGKGYGKAIWEA 91 D +++E + F+ + +G I + + +A + V D+R KG G A+ Sbjct: 54 DMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHK 113 Query: 92 GIATAEGRTIGLDGVAAQQGN------YRKAGFE-PAYSTIRYGGVPTS 133 I A+ + Q N Y K F A T+ Y PT+ Sbjct: 114 AIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTA 162
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1096 bits (2836), Expect = 0.0 Identities = 437/1042 (41%), Positives = 658/1042 (63%), Gaps = 16/1042 (1%) Query: 3 ISRFFVDRPVFAGVLSVLIVVAGLIGLRALPISEYPEVVPPSVVVRATYPGANPSVIAET 62 ++ FF+ RP+FA VL++++++AG + + LP+++YP + PP+V V A YPGA+ + +T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 VATPLEEQINGVEGMLYMSSQATSDGVLNVTVTFKLGTDPDKAQQLVQNRVSQAEPRLPA 122 V +E+ +NG++ ++YMSS + S G + +T+TF+ GTDPD AQ VQN++ A P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 123 EVRALGITTVKSSPDFIMVVNLVSDGDSHDITYLRNYATLNIKDRLARIPGVGQVQVFGA 182 EV+ GI+ KSS ++MV VSD + +Y N+KD L+R+ GVG VQ+FG Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG- 179 Query: 183 GDYSMRVWLDPQKAAEHDLAASDISNAISSQNVQAAAGIIGASPSQPGVDLQLNVNAQGR 242 Y+MR+WLD ++ L D+ N + QN Q AAG +G +P+ PG L ++ AQ R Sbjct: 180 AQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR 239 Query: 243 LRTPEEFGNIIVKTGANGEITRLRDVARIELGAADYTLRSLLDGKPAVAVAVLQAPGSNA 302 + PEEFG + ++ ++G + RL+DVAR+ELG +Y + + ++GKPA + + A G+NA Sbjct: 240 FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 303 IEIADNVRATMDQLQLAMPEGVKYEIVYDTTKFVRSSIEKVIDTLLEAIALVVLVVIVFL 362 ++ A ++A + +LQ P+G+K YDTT FV+ SI +V+ TL EAI LV LV+ +FL Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 363 QTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVER- 421 Q RA++IP IAVPV ++GTFA++ FG+SIN L++FG+VLAIG++VDDAIVVVENVER Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 422 NIEQGLSPRAATYKAMKEVSGPIIAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTV 481 +E L P+ AT K+M ++ G ++ IA+VL AVF+P+AF G +G YRQF++TI + Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 482 ISAFNSLTLSPALAALLLKGHHAPKDWLTRFMDAIFGWFFRGFNRVFGAGSNAYGKGVGG 541 +S +L L+PAL A LLK ++ G FF FN F N Y VG Sbjct: 480 LSVLVALILTPALCATLLKP-------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGK 532 Query: 542 LVSRKSIVMVVYLALVGATYSMFTTVPGGFVPSQDKQYLIGFAQLPDAASLDRTEDVIKR 601 ++ +++Y +V +F +P F+P +D+ + QLP A+ +RT+ V+ + Sbjct: 533 ILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQ 592 Query: 602 MTDIALA--QPGVANAIAFPGLSINGFTNSSNAGIVFVTLKDFEERKTPDLSGGAIAMAL 659 +TD L + V + G S +G + NAG+ FV+LK +EER + S A+ Sbjct: 593 VTDYYLKNEKANVESVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRA 650 Query: 660 NQKFGVIQDAFIAMFPPPPVNGLGTTGGFKLQIEDRAGLGNQALDEATKAVLAKAYQTP- 718 + G I+D F+ F P + LGT GF ++ D+AGLG+ AL +A +L A Q P Sbjct: 651 KMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPA 710 Query: 719 ELAGLFSSFQINVPQLYADLDRAKAEQLGVSVTDVFQTLQIYLGSLYVNDFNAFGRTYSV 778 L + + + Q ++D+ KA+ LGVS++D+ QT+ LG YVNDF GR + Sbjct: 711 SLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKL 770 Query: 779 RVQADAKFRAQPEDIGQLKVRSASGEMIPLSALLKVQPSTGPERANRYNGFLAADINGGP 838 VQADAKFR PED+ +L VRSA+GEM+P SA G R RYNG + +I G Sbjct: 771 YVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEA 830 Query: 839 APGFSSGQAQAAIEKILRETLPSGIDFEWTDLTYQQILAGNSSVVVFPLALLLVFLVLAA 898 APG SSG A A +E + + LP+GI ++WT ++YQ+ L+GN + + ++ ++VFL LAA Sbjct: 831 APGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 899 QYESLTLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFAR 958 YES ++P++++++VP+G++ L L N+++ +GL+ +GLSAKNAILIVEFA+ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 959 EL-EFEGRTPREAAVEASRLRLRPILMTSMAFIMGVVPLVVSTGAGAEMRAAMGVAVFSG 1017 +L E EG+ EA + A R+RLRPILMTS+AFI+GV+PL +S GAG+ + A+G+ V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1018 MIGVTFFGIFMTPVFYVLLRRL 1039 M+ T IF PVF+V++RR Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRC 1031 Score = 93.7 bits (233), Expect = 2e-21 Identities = 70/323 (21%), Positives = 130/323 (40%), Gaps = 20/323 (6%) Query: 738 LDRAKAEQLGVSVTDVF-----QTLQIYLGSLYVNDFNAFGRTYSVRVQADAKFRAQPED 792 LD + ++ DV Q QI G L G+ + + A +F+ PE+ Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQL-GGTPALPGQQLNASIIAQTRFKN-PEE 245 Query: 793 IGQLKVR-SASGEMIPLSALLKVQPSTGPER-ANRYNGFLAADINGGPAPGFSSGQ-AQA 849 G++ +R ++ G ++ L + +V+ R NG AA + A G ++ A+A Sbjct: 246 FGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKA 305 Query: 850 AIEKI--LRETLPSGIDFEWTDLTYQQILAGNSSV--VVFPL--ALLLVFLVLAAQYESL 903 K+ L+ P G+ Y S+ VV L A++LVFLV+ +++ Sbjct: 306 IKAKLAELQPFFPQGMKVL---YPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNM 362 Query: 904 TLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVE-FARELEF 962 L + VP+ +L + G N T G+V+ +GL +AI++VE R + Sbjct: 363 RATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME 422 Query: 963 EGRTPREAAVEASRLRLRPILMTSMAFIMGVVPLVVSTGAGAEMRAAMGVAVFSGMIGVT 1022 + P+EA ++ ++ +M +P+ G+ + + + S M Sbjct: 423 DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSV 482 Query: 1023 FFGIFMTPVFYVLLRRLTGNRPL 1045 + +TP L + Sbjct: 483 LVALILTPALCATLLKPVSAEHH 505
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 46.4 bits (110), Expect = 1e-07 Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 7/194 (3%) Query: 67 SGRLEAVDRVQ-IRPRVEGAILSVAFREGALVKQGDLLFTIDPAPYQASVAQAQGQVASA 125 +G+L R + I+P + + +EG V++GD+L + +A + Q + A Sbjct: 87 NGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQA 146 Query: 126 EAKVSLAQTELDRGRRLSDNRTISQSDLDQRQSALAEAQAGLRSAQAALRS-----AQLN 180 + + Q + + + E + + Q Sbjct: 147 RLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKE 206 Query: 181 LDYTQVRAPVSGRIGKIEVTAGNLVAAGSASPALTTLVSVDPI-YASFNASEEMVTRALA 239 L+ + RA + +I S ++L+ I + E A+ Sbjct: 207 LNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVN 266 Query: 240 QLPQTDSALPPVEQ 253 +L S L +E Sbjct: 267 ELRVYKSQLEQIES 280 Score = 46.0 bits (109), Expect = 2e-07 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 10/99 (10%) Query: 111 YQASVAQAQGQVASAEAKVSLAQTELDRGRRLSDNRTISQSDLDQRQSALAEAQAGLRSA 170 + + Q+ E+++ A+ E +L N + + L + + Sbjct: 264 AVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDK---------LRQTTDNIGLL 314 Query: 171 QAALRSAQLNLDYTQVRAPVSGRIGKIEV-TAGNLVAAG 208 L + + +RAPVS ++ +++V T G +V Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 106 bits (265), Expect = 7e-30 Identities = 74/255 (29%), Positives = 115/255 (45%), Gaps = 12/255 (4%) Query: 2 ASNKDSKVALVTGASRGIGAAVARRLARDGFTVVVNYSGSAAAAEDLAREIEQAGGRALT 61 A + K+A +TGA++GIG AVAR LA G + + E + ++ A Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQG-AHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 62 AKADVSDAEAVRRMFDAAEGAFGGVDVLVNNAGIMMLSPLAEADDENFGRQIGVNLKGTF 121 ADV D+ A+ + E G +D+LVN AG++ + DE + VN G F Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVF 121 Query: 122 NTLREAARRLRD--GGRVINFSTSVVGLKLENYGVYAATKAAVETLTAIMAKEMRGRNIT 179 N R ++ + D G ++ ++ G+ + YA++KAA T + E+ NI Sbjct: 122 NASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIR 181 Query: 180 VNAIAPGPVATDLFL------NGKTEELISRMAKMN---PLERLGSPEDIASAVAFLAGP 230 N ++PG TD+ NG + + + PL++L P DIA AV FL Sbjct: 182 CNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSG 241 Query: 231 DGGWINGQTLRANGG 245 G I L +GG Sbjct: 242 QAGHITMHNLCVDGG 256
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 130 bits (329), Expect = 3e-35 Identities = 86/411 (20%), Positives = 169/411 (41%), Gaps = 17/411 (4%) Query: 14 NRGAITACVILAVIMQALDTTIANVALPYIQGSVSASADQINWVLTSYIVAAAIMTPPSG 73 N+ I C++ L+ + NV+LP I + NWV T++++ +I T G Sbjct: 13 NQILIWLCIL--SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 74 FLAAKFGRKRVLLVAIAGFVAASVLCGLAQSLNQIVAF-RLLQGLFGASLVPLSQGILLD 132 L+ + G KR+LL I SV+ + S ++ R +QG A+ L ++ Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVAR 130 Query: 133 IYTVEERGSAMALFGVSVMVGPVLGPVIGGWLTDNISWRWVFYINVPIGALAFMGIVVFV 192 E RG A L G V +G +GP IGG + I W ++ I + + + Sbjct: 131 YIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLK 190 Query: 193 TETKRDLLAKLDWFGFGMMSLFIAALQLFLDRGEQLDWFSSGEIMLEAIICAAAFYLLLV 252 E + D G +MS+ I L F++ + I+ +F + + Sbjct: 191 KEVRIK--GHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVK 238 Query: 253 HTLTAEKSFVNPKLFLDQNFTVSMIFIFVVGVTYLASLALMTPYLQTLMGYPVITAG-IV 311 H FV+P L + F + ++ ++ T ++++ ++ + G ++ Sbjct: 239 HIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVI 298 Query: 312 MGPRGLGTMLCMFIVGRLIGKVDTRLLLVLGLGLTAWAMYDMTGWTPDVSQWTIVSVGFI 371 + P + ++ +I G L+ + +L +G+ + + + + + W + + Sbjct: 299 IFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTA-SFLLETTSWFMTIIIVF 357 Query: 372 QGAGLGFLFVPLTTVAFATLPAHMRGDGTGLYNLSRNIGSAVGISIVSALI 422 GL F ++T+ ++L G G L N + + GI+IV L+ Sbjct: 358 VLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 93.7 bits (233), Expect = 6e-23 Identities = 55/362 (15%), Positives = 104/362 (28%), Gaps = 88/362 (24%) Query: 101 VSGLVDRIDVHENQAVKAGQVLFSLKADSFKIALDGAKAQLGAQR--------------- 145 + +V I V E ++V+ G VL L A + ++ L R Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 146 -----------------------NQIMNLKASYQQSLAEITQAQADLPYYQDQFDRQQAL 182 +K + + Q + +L + + A Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 183 VNNGSATQSAYDE--------------AKHNLEAAQQKVAVAKAEAATTLAQLGG----- 223 +N AKH + + K A E +QL Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282 Query: 224 -----------------SADQPVEENALYLQAKSNVDNARRELANSIVKAPFDGIVTNVH 266 D+ + + S+++AP V + Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342 Query: 267 ALQVGSYLQASQQAFSLVATDH-LWIAASPKETELTYVKPGQMATIYVDTYPGVTW---S 322 G + ++ +V D L + A + ++ ++ GQ A I V+ +P + Sbjct: 343 VHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLV 402 Query: 323 GKVESISPASGSSFSLLPAQNTTGNWVKVVQRIPMRVSIEDAAGKP-PLRVGMSTVVDVE 381 GKV++I+ + G V+ I + K PL GM+ +++ Sbjct: 403 GKVKNINLDA-------IEDQRLGLVFNVIISIE--ENCLSTGNKNIPLSSGMAVTAEIK 453 Query: 382 TG 383 TG Sbjct: 454 TG 455
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 2e-06 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 9/111 (8%) Query: 62 VRSRVGGYLQEVHFEDGALVKQGDLLFVIDQRPFITALNQAKAALEASQSALVFADAQYK 121 ++ ++E+ ++G V++GD+L + A+A +QS+L+ A + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQT 151 Query: 122 RAQSLASSGSQSAQTLDDRRREFESAEANVRGAQAAADRAALDLEYTEIKA 172 R Q S S L + + E NV + + + +++ + Sbjct: 152 RYQ--ILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQN 200 Score = 33.3 bits (76), Expect = 0.002 Identities = 16/108 (14%), Positives = 43/108 (39%), Gaps = 13/108 (12%) Query: 102 AKAALEASQSALVFADAQYKRAQS----LASSGSQSAQTLDDRRREFES--------AEA 149 AK A+ ++ V A + + +S + S + + + F++ Sbjct: 250 AKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 150 NVRGAQAAADRAALDLEYTEIKAPLSGRI-DRRLISPGNLVQADQTVL 196 N+ + + + I+AP+S ++ ++ + G +V +T++ Sbjct: 310 NIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLM 357
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1009 bits (2611), Expect = 0.0 Identities = 430/1043 (41%), Positives = 641/1043 (61%), Gaps = 18/1043 (1%) Query: 4 AHFFVDRPIFAAVISILFLVVGGIAYTQLPVAQYPEIAPPTIVVRTSYPGADPQTIADTV 63 A+FF+ RPIFA V++I+ ++ G +A QLPVAQYP IAPP + V +YPGAD QT+ DTV Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 STPLEQQINGVEDMLYMSSYSSADGAISLTITFKLGTDLDKVQVLVQNRVSIALPRLPEE 123 + +EQ +NG+++++YMSS S + G++++T+TF+ GTD D QV VQN++ +A P LP+E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VQRLGVTTDKSSPDLMMVVHLLSPSHRYDQLYVSNYARNRIRDVLVRLDGVGDVQVFGER 183 VQ+ G++ +KSS +MV +S + Q +S+Y + ++D L RL+GVGDVQ+FG Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 QYSMRIWLDPEKLSAYGMTSDDVVSALREQNVQVSGGKIGAPPVTGRNAFEYTVRTDGRF 243 QY+MRIWLD + L+ Y +T DV++ L+ QN Q++ G++G P ++ RF Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 SDVREFRYVIVKSTTSGRLVQLQDVARIELGAQDYVTNSYLNNDPAVALGIFARPGTNAL 303 + EF V ++ + G +V+L+DVAR+ELG ++Y + +N PA LGI G NAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 DTAHQVQALMKDISQNFPEGLEYRIVYDTTEFISASINEVYKTIVEAAILVAIVVLVFLQ 363 DTA ++A + ++ FP+G++ YDTT F+ SI+EV KT+ EA +LV +V+ +FLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 SWRTAIIPIVAIPVSLIGTFAVLLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNL 423 + R +IP +A+PV L+GTFA+L AFG+S+N LT+FG+VLAIG++VDDAIVVVENVER + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 424 A-RGMTPKQASHVTMDEVGTAVVAISLVLIAVFVPTAFIPGISGQFYRQFAVTIAVTTAI 482 + PK+A+ +M ++ A+V I++VL AVF+P AF G +G YRQF++TI A+ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SALNSLTLSPALAGILLKAHDHEKKRKSIASRLGAGLASGFNRGFDRMSSGYSWTVRHLV 542 S L +L L+PAL LL K + G FN FD + Y+ +V ++ Sbjct: 481 SVLVALILTPALCATLL------KPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKIL 534 Query: 543 SSWVGLTCSMVAFAALLGATWYMTTRVPSGFIPTMDQGYAIIVVQLPDGASLARTDAVIK 602 S ++ +A ++ + R+PS F+P DQG + ++QLP GA+ RT V+ Sbjct: 535 GS---TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLD 591 Query: 603 RVGDIA--RTVPGVGNAVQFAGFSGATFTNASNSGVVFVPFKSFAEREEDGENANKIIGE 660 +V D V + GFS + A N+G+ FV K + ER D +A +I Sbjct: 592 QVTDYYLKNEKANVESVFTVNGFSFS--GQAQNAGMAFVSLKPWEERNGDENSAEAVIHR 649 Query: 661 LFGKLQSIQEAFIIAIPPPSVRGVGNSGGFKMQISDLENPDMTRVLGLARQMMGAAATT- 719 +L I++ F+I P++ +G + GF ++ D + Q++G AA Sbjct: 650 AKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHP 709 Query: 720 EGLTGVFTTFSDASPQYFLSIDRDKARFLNVPIPNIFNALSINLGVAYVNDFNAFGRVYQ 779 L V + + Q+ L +D++KA+ L V + +I +S LG YVNDF GRV + Sbjct: 710 ASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKK 769 Query: 780 VRAQADRQYRMDKEDILALKVRSATGALVPLGTLMDIQDSSGPALVQRYNMYVSVPLQGN 839 + QAD ++RM ED+ L VRSA G +VP G ++RYN S+ +QG Sbjct: 770 LYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGE 829 Query: 840 PTPGTSTGDALKKMEELAAKILPPGTTFEWTELAYQETHTGNTAVYIFALSVIFVFLALA 899 PGTS+GDA+ ME LA+K LP G ++WT ++YQE +GN A + A+S + VFL LA Sbjct: 830 AAPGTSSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLA 888 Query: 900 AQYESWVLPLAIILIVPLAVLAALIGVALRGMDNNVLTQIGLIVLIGLAAKNAILIVEFA 959 A YESW +P++++L+VPL ++ L+ L N+V +GL+ IGL+AKNAILIVEFA Sbjct: 889 ALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFA 948 Query: 960 RQA-EEEGKSPVEAAIEASHLRLRPILMTAFAFIFGVLPLAIATGPGAEMRQSLGTAVFS 1018 + E+EGK VEA + A +RLRPILMT+ AFI GVLPLAI+ G G+ + ++G V Sbjct: 949 KDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMG 1008 Query: 1019 GMLGVTLFGLFLTPVFYVVLRGR 1041 GM+ TL +F PVF+VV+R Sbjct: 1009 GMVSATLLAIFFVPVFFVVIRRC 1031 Score = 97.2 bits (242), Expect = 2e-22 Identities = 74/423 (17%), Positives = 147/423 (34%), Gaps = 30/423 (7%) Query: 649 EDGENANKIIGELFGKLQSIQEAFIIAIPPPSVRGVGNSGGFKMQIS------DLENPDM 702 + G + + ++ KLQ + + +S + M D+ Sbjct: 95 QSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDI 154 Query: 703 TRVLGLARQMMGAAATTEGLTGVFTTFSDASPQYFLSIDRDKARFLNVPIPNIFNALS-- 760 + + A + + G+ V A + +D D + ++ N L Sbjct: 155 SDYV--ASNVKDTLSRLNGVGDV--QLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQ 210 Query: 761 -INLGVAYVNDFNAF-GRVYQVRAQADRQYRMDKEDILALKVR-SATGALVPLGTLMDIQ 817 + + A G+ A +++ + E+ + +R ++ G++V L + ++ Sbjct: 211 NDQIAAGQLGGTPALPGQQLNASIIAQTRFK-NPEEFGKVTLRVNSDGSVVRLKDVARVE 269 Query: 818 DSSGP-ALVQRYNMYVSVPLQGNPTPGTSTGDALK----KMEELAAKILPPG----TTFE 868 ++ R N + L G + D K K+ EL P G ++ Sbjct: 270 LGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQP-FFPQGMKVLYPYD 328 Query: 869 WTELAYQETHTGNTAVYIFALSVIFVFLALAAQYESWVLPLAIILIVPLAVLAALIGVAL 928 T + + V +++ VFL + ++ L + VP+ +L +A Sbjct: 329 TTPFV---QLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAA 385 Query: 929 RGMDNNVLTQIGLIVLIGLAAKNAILIVE-FARQAEEEGKSPVEAAIEASHLRLRPILMT 987 G N LT G+++ IGL +AI++VE R E+ P EA ++ ++ Sbjct: 386 FGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGI 445 Query: 988 AFAFIFGVLPLAIATGPGAEMRQSLGTAVFSGMLGVTLFGLFLTPVFYVVLRGRRRSRPA 1047 A +P+A G + + + S M L L LTP L + Sbjct: 446 AMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHH 505 Query: 1048 ERL 1050 E Sbjct: 506 ENK 508
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 77.4 bits (190), Expect = 8e-20 Identities = 38/204 (18%), Positives = 82/204 (40%), Gaps = 9/204 (4%) Query: 1 MVRRPRRKAEETRQDILSMAEMLFRERGFAAVSIADIAGALDMSPANVFKHFRSKVALVD 60 M R+ +++A+ETRQ IL +A LF ++G ++ S+ +IA A ++ ++ HF+ K L Sbjct: 1 MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS 60 Query: 61 AIAGRHLDNAAERFVPLDQDIPAE-EQLLRFVLR------LLEGHLQDIQKSPYIFEMVV 113 I N E + P + +LR +L + E + + + + V Sbjct: 61 EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV 120 Query: 114 STIEAKLEAGKRYRARIEEKLREIIRKGMTEGRYH-CRDPERAAHTVADVLACVLHPILI 172 + +A + +++ + ++ + RAA + ++ ++ L Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF 180 Query: 173 VRDDKETLVRRAGEIVGFVDAALQ 196 L + A + V + Sbjct: 181 -APQSFDLKKEARDYVAILLEMYL 203
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.7 bits (98), Expect = 3e-06 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 10/105 (9%) Query: 71 IRPQVSGIIREIAFREGGEIKKGDLLYQIEDAPYIAAVEQAKAAISKAEASVPSAESNLE 130 I+P + I++EI +EG ++KGD+L ++ A+A K ++S+ A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQT 151 Query: 131 RYQRLVGSGATQIEYE---TARTTLLQAKAEVESAKAALSAAQID 172 RYQ L S E E +L Q Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFS 196 Score = 41.0 bits (96), Expect = 7e-06 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 9/109 (8%) Query: 95 LLYQIEDAPYIAAVEQAKAAISKAEASVPSAESNLERYQRLVGSGATQIEYETARTTLLQ 154 L + + + + K+ + + E+ + SA+ + TQ+ L Q Sbjct: 255 LEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL--------VTQLFKNEILDKLRQ 306 Query: 155 AKAEVESAKAALSAAQIDLDHTKIVAPFDG-VIDQTAYNVGNVVSANQT 202 + L+ + + I AP V + G VV+ +T Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1099 bits (2844), Expect = 0.0 Identities = 584/1032 (56%), Positives = 743/1032 (71%), Gaps = 6/1032 (0%) Query: 1 MAKFFIRRPIFAWVIAITIMLAGLLAIFTLSISQYPDIAPTTVRINATYRGASAETVEKS 60 MA FFIRRPIFAWV+AI +M+AG LAI L ++QYP IAP V ++A Y GA A+TV+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTTIIEDGMTGLDDLTYMTSTS-STGSASIQLTFGTSIDPDIAQVQVQNKLQLVQSQLPG 119 VT +IE M G+D+L YM+STS S GS +I LTF + DPDIAQVQVQNKLQL LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 DVIDAGISVTRSTSSILLVGSLVSTDGKRNSVDLGNIMSTSIEDQIQRLEGVGSINVFGS 179 +V GISV +S+SS L+V VS + D+ + ++++++D + RL GVG + +FG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 GYAMRIWLDPFKLVKYQLTPSDVTAAIQAQNTQVSVGSLGAQPTTPGQQLNVTITAQSQL 239 YAMRIWLD L KY+LTP DV ++ QN Q++ G LG P PGQQLN +I AQ++ Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 TTVADFEHIILKVEKDGATVRLSDVSRIEIGQESYGGSSRYNGLPSSGFAVNLAIGANAI 299 +F + L+V DG+ VRL DV+R+E+G E+Y +R NG P++G + LA GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 DTAARVRSALDVIGRTLPEGVKITYPYDTTPFVELSIEKVVHTLIEAIVLVFVVLLVFLQ 359 DTA +++ L + P+G+K+ YPYDTTPFV+LSI +VV TL EAI+LVF+V+ +FLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRATLIPTIAVPVVLLGTFGVLAATGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIM 419 N+RATLIPTIAVPVVLLGTF +LAA GYSINTLTMF MVLAIGLLVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 SEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAMLL 479 E+KL P EATEKSM +I GA+VGIA+VL+AVFIPMAFFGGSTG IYRQFSITIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SALVAIVLTPALCATMLKPVSEH---RKHRVGDWFNRNFTRSTKGYVRTIGYLLKRPIRV 536 S LVA++LTPALCAT+LKPVS K WFN F S Y ++G +L R Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 537 MLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGSTTQQTQAVVEKVENYYREN 596 +L++ L+ AG LF RLPSSFLP+EDQGV LT++ P G+T ++TQ V+++V +YY +N Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 597 EKDAVESVFGALGFGFNGSGQNSAIVFTKLKDFSLRTDPNLSAQSVVNRALRSFFAMREA 656 EK VESVF GF F+G QN+ + F LK + R SA++V++RA +R+ Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 657 QVFALLPPAIQGLGVSSGFSMYLVDTGGHGNDALTAASKRLIQMGNSS-GKIVALRSSNK 715 V PAI LG ++GF L+D G G+DALT A +L+ M +V++R + Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 716 EVEPQMRIVLDQEKIGAMGVDIASVNSMLSIIFTGRDVNDFTLNGEIKPVYVQGDAPFRM 775 E Q ++ +DQEK A+GV ++ +N +S G VNDF G +K +YVQ DA FRM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 776 QPDDLNHWYARNNSGEMVPFSAFTKTEWVKGAPSLARFNAVSAIPLDGASAPGVSSGDAM 835 P+D++ Y R+ +GEMVPFSAFT + WV G+P L R+N + ++ + G +APG SSGDAM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 836 NEMEALTEQLGGGYTVAWQGISYQERLSGSQAPILYAISVLVVFLCLAALYESWSIPFSV 895 ME L +L G W G+SYQERLSG+QAP L AIS +VVFLCLAALYESWSIP SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 896 IMAVPVGILGALAAATLFGQANDVYFKVGLLTTIGLAAKNAILIVEFAKDRME-SGLGLY 954 ++ VP+GI+G L AATLF Q NDVYF VGLLTTIGL+AKNAILIVEFAKD ME G G+ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 955 EATLEAARLRLRPIIMTSLAFILGVVPLAVATGAGSAAQNAIGIGVLGGMLAATMLGIFF 1014 EATL A R+RLRPI+MTSLAFILGV+PLA++ GAGS AQNA+GIGV+GGM++AT+L IFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1015 VPSFFVVIRRIF 1026 VP FFVVIRR F Sbjct: 1021 VPVFFVVIRRCF 1032 Score = 89.5 bits (222), Expect = 4e-20 Identities = 97/530 (18%), Positives = 187/530 (35%), Gaps = 48/530 (9%) Query: 527 GYLLKRPIRVMLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGSTTQQTQA-V 585 + ++RPI ++ +++ A +LP + P +++ PG+ Q Q V Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIA-PPAVSVSANYPGADAQTVQDTV 61 Query: 586 VEKVENYYRENEKDAVESVFGALGFGFNGSGQNSAIVFTKLKDFSLRTDPNLSAQSVVNR 645 + +E +++ G + S +SA T F TDP+++ V N+ Sbjct: 62 TQVIE-----------QNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNK 110 Query: 646 ALRSFFAMREAQVFALLPPAIQGLGV-----SSGFSMYLV---DTGGHGNDALTAASKRL 697 LLP +Q G+ SS + M D G D ++ Sbjct: 111 L---------QLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASN 161 Query: 698 IQMGNSSGKIVALRSSNKEVEPQMRIVLDQEKIGAMGVDIASVNSMLSI----IFTGRDV 753 ++ S V + MRI LD + + + V + L + I G+ Sbjct: 162 VKDTLSRLNGVGDVQLFGA-QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLG 220 Query: 754 NDFTLNGEIKPVYVQGDAPFRMQPDDLNHWYARNNSGEMVPFSAFTKTEW-VKGAPSLAR 812 L G+ + F+ + N+ G +V + E + +AR Sbjct: 221 GTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIAR 280 Query: 813 FN-----AVSAIPLDGASAPGVSSGDAMNEMEALTEQLGGG--YTVAW-QGISYQERLSG 864 N + GA+A + ++ L G + Q + Sbjct: 281 INGKPAAGLGIKLATGANALDTAKA-IKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHE 339 Query: 865 SQAPILYAISVLVVFLCLAALYESWSIPFSVIMAVPVGILGALAAATLFGQANDVYFKVG 924 + AI ++VFL + ++ +AVPV +LG A FG + + G Sbjct: 340 VVKTLFEAI--MLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG 397 Query: 925 LLTTIGLAAKNAILIVEFAKDRM-ESGLGLYEATLEAARLRLRPIIMTSLAFILGVVPLA 983 ++ IGL +AI++VE + M E L EAT ++ ++ ++ +P+A Sbjct: 398 MVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMA 457 Query: 984 VATGAGSAAQNAIGIGVLGGMLAATMLGIFFVPSFFVVIRRIFATRGKNA 1033 G+ A I ++ M + ++ + P+ + + + Sbjct: 458 FFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEN 507
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 9e-06 Identities = 25/198 (12%), Positives = 63/198 (31%), Gaps = 22/198 (11%) Query: 249 PASALVDELLKGRGQPVFRGGINSGIPADLIRNRPDIRVAERDLAAATANIGVAEAQLYP 308 +++V E++ G+ V +G + L++ AE D +++ A + Sbjct: 102 IENSIVKEIIVKEGESVRKGDV-------LLK--LTALGAEADTLKTQSSLLQARLEQTR 152 Query: 309 SISLSGSISPSYINQRGIHGDLTPWSFGPTLNLPIFDGGRLRANVKSAQSTAATAYLNWK 368 LS SI + + + + + + V S + W+ Sbjct: 153 YQILSRSIELNKLPELKLPDEPYFQNVSE-------------EEVLRLTSLIKEQFSTWQ 199 Query: 369 STVLTAVEQVENALAAVRRDARTVAALQAQVKTTQETLELSTASYKDGASSLLDVLDAQR 428 + ++ A + + + + L+ ++ A + VL+ + Sbjct: 200 NQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQEN 259 Query: 429 QVSLAQASLAQAVQQMAK 446 + A L Q+ + Sbjct: 260 KYVEAVNELRVYKSQLEQ 277
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 31.0 bits (70), Expect = 0.007 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 15/105 (14%) Query: 46 VVIIHGRNEYIEKYFETIRDL-TGQGLWVATFDLRGQGGSSRLLKRRNHGHIRRFADYER 104 V+++ GR I++ + + V T L Sbjct: 166 VLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLS-------------WASAADVVKLVT 212 Query: 105 DLDTFLEKIVLPDTRLPFYLLGHSTGGLIALSAAPYLTTRIDRMV 149 +L+ K LP + + + T + +S P RI M+ Sbjct: 213 ELNKDTSKSALPGSMVANVVADERT-NAVLVSGEPNSRQRIIAMI 256
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.8 bits (67), Expect = 0.015 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 105 NSLRVAGGLGTIPRIVAEN---MEIYARRLPVQEGLDRVEAVYKPYHAALRRL--IARTH 159 N + GL T + A+N + +A+ L +EG VEA A RL I T Sbjct: 922 NDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEAT---LMAVRMRLRPILMTS 978 Query: 160 VQFGFGVL 167 + F GVL Sbjct: 979 LAFILGVL 986
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 90.7 bits (225), Expect = 1e-24 Identities = 35/117 (29%), Positives = 58/117 (49%) Query: 4 KILLAEDDNDMRRFLVKALEKAGYKVLSYDNGASAYDRLREEPFSLLLTDIVMPEMDGIE 63 IL+A+DD +R L +AL +AGY V N A+ + + L++TD+VMP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSKAPKDAKVLSKPFHLRDLVDEVNKMLAA 120 L R + PDL V+ ++ + L KPF L +L+ + + LA Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.9 bits (67), Expect = 0.006 Identities = 19/101 (18%), Positives = 25/101 (24%), Gaps = 8/101 (7%) Query: 27 LPWAVIGIAAIGGIVAHD---NWKSLQPMLERESTPIVRETAEPRPVPRKDVPPKQVAVA 83 PW + I G V L + PI P D+ P Q Sbjct: 14 FPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQPISVTMVAP-----ADLEPPQAVQP 68 Query: 84 APTPRAAQPLPPAAIPTPVIQPVKAVPAPASPGAQQTATGA 124 P P P IP P + + P + Sbjct: 69 PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 109 Score = 28.4 bits (63), Expect = 0.021 Identities = 12/62 (19%), Positives = 20/62 (32%) Query: 65 AEPRPVPRKDVPPKQVAVAAPTPRAAQPLPPAAIPTPVIQPVKAVPAPASPGAQQTATGA 124 EP P P K+ P +P+ P ++PV++ PA + Sbjct: 80 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTS 139 Query: 125 FG 126 Sbjct: 140 ST 141
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.4 bits (66), Expect = 0.025 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 22/91 (24%) Query: 240 ERVAD----GRFVLGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPQAAAEPEL 295 ER AD + VLG +++G + + +++ +D T + +L Sbjct: 126 ERAADIRDVSKRVLG-HLIGVETGS-LATIAEETVIIAEDLT-----------PSDTAQL 172 Query: 296 GRRYLAFFMSKEGQT-----IMARELQIPAV 321 ++++ F + G IM+R L+IPAV Sbjct: 173 NKQFVKGFATDIGGRTSHSAIMSRSLEIPAV 203
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 42.6 bits (100), Expect = 1e-06 Identities = 16/97 (16%), Positives = 29/97 (29%) Query: 400 LALDPDLPEAHASHGLALHQSGYDDRAAAAFERALTLDPNLFEANFHYARFFFMRGNFAE 459 + D E S +QSG + A F+ LD G + Sbjct: 29 NEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 88 Query: 460 SVQYFTRAAEIRPDDYVSPIHLMAAYSSLGRPVDTEN 496 ++ ++ A + + P H G + E+ Sbjct: 89 AIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAES 125
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 2e-22 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Query: 2 RILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDWLD 61 IL+ +D+ A+ L+ L G+ V + + A+ IAA + DLV+ D+ +P+ + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLL----R 117 +L ++ + VL+++A+ T +K + GA DYL KPFD+ E + L R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 118 RQAGLRSATVGFGGI 132 R + L + + Sbjct: 125 RPSKLEDDSQDGMPL 139
>PF06580#Sensor histidine kinase Length = 349 Score = 31.8 bits (72), Expect = 0.006 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 22/90 (24%) Query: 365 NAIAYA----GKGAEVTVRIIAAADAVRLEVEDNGPGIPREKLEAVRRRFSRGNDSGAPG 420 N I + +G ++ ++ V LEVE+ G + Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSL---------------ALKNTKES 310 Query: 421 AGLGLPIVEE-IANLF--NAALTLEPGAGG 447 G GL V E + L+ A + L G Sbjct: 311 TGTGLQNVRERLQMLYGTEAQIKLSEKQGK 340
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 31.3 bits (71), Expect = 0.006 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 12/130 (9%) Query: 150 LGTGVGGGLVADGRLVNEAGGFAGEWGHGPIIASAAGNPPVAIPAYACGCGQKGC---VD 206 LG G V +G+ ++ + GF G + + +G+ +I +Y V+ Sbjct: 208 LGNGSSIAAVKNGKSIDTSMGFTPL--EGLAMGTRSGSIDPSIISYLMEKENISAEEVVN 265 Query: 207 TVGGARGLERLHKTVHDLDLASEEIIDQ-WRRGEKKATRTIDVYVDLVASPLALTINITG 265 + G+ + D ++ D ++ G+K+A ++V+ V + G Sbjct: 266 ILNKKSGVYGISGISSDF----RDLEDAAFKNGDKRAQLALNVFAYRVKKTIGSYAAAMG 321 Query: 266 A--TIVPVGG 273 IV G Sbjct: 322 GVDVIVFTAG 331
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 522 bits (1345), Expect = e-170 Identities = 247/1044 (23%), Positives = 445/1044 (42%), Gaps = 57/1044 (5%) Query: 13 LSRWAIGHPSIARFLFGLIIITGVFGLMRMGQREDPEFTFRVMVVQAIWPGASIQEMEDQ 72 ++ + I P A L ++++ G ++++ + P + V A +PGA Q ++D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 73 VVNKIERKLQETPHIDWVKSYT-RAGSAIITLQVKGDTNSKDVADAFYQVRKKVGDISSE 131 V IE+ + ++ ++ S + AGS ITL + T D A QV+ K+ + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGT---DPDIAQVQVQNKLQLATPL 117 Query: 132 LPQGLLGPY-FNDEFGDTFITLHSISGDGYSY--PELKKFAI-QARDMLLTTPGVEKAVI 187 LPQ + ++ +++ + D ++ + +D L GV + Sbjct: 118 LPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQL 177 Query: 188 IGDQPEKIYIDVSSKALAERGLTILDLQNAVKGQNNVDPAGSVDTGL------RSVRISV 241 G Q + I + + L + LT +D+ N +K QN+ AG + + I Sbjct: 178 FGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIA 236 Query: 242 EGDVKKAADIRELRLRAG--GQVTRLGDIATVSSGLEDPYQRKYRFNGHDSVQVGVVMAK 299 + K + ++ LR G V RL D+A V G E+ Y R NG + +G+ +A Sbjct: 237 QTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN-YNVIARINGKPAAGLGIKLAT 295 Query: 300 GFNVTDVGKGVEATYQRFEEALPYGVAVDQIANQPDVVTDAISEFMHALGEALVIVLVVS 359 G N D K ++A + P G+ V + V +I E + L EA+++V +V Sbjct: 296 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 360 FLSIG-WRSGLVIAIAIPLVLAATFALMYELGIDLQRISLGALIIALGLLVDDAMIVVEM 418 +L + R+ L+ IA+P+VL TFA++ G + +++ +++A+GLLVDDA++VVE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 419 MER-KLEEGLVKVEAASFAYSSTAFPMLTGTLITTAGFIPVGFAASTAGEYVRSLFYVVG 477 +ER +E+ L EA + S ++ ++ +A FIP+ F + G R + Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 478 IALVTSWFVAVYFTPWLGYMILKQRHHAGEHHDA-------FDTRFYRRLRG---TVGWA 527 A+ S VA+ TP L +LK + EHH+ F+T F + +VG Sbjct: 476 SAMALSVLVALILTPALCATLLKPV--SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 528 VRHRVIVLLLTLGTFVTSLWAFQFIPQNFFPQSSRPEILVDLWLPEGTSIKEVETQAKAL 587 + LL+ + F +P +F P+ + L + LP G + + + + Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 588 EAKMMDDPDKRFIATYIGEGAPRFFLPLDQQLRNPNFAQL-LVMANEEPARERLIIKLRR 646 + + + + G Q +N A + L E E + Sbjct: 594 TDYYLKNEKANVESVFTVNG-----FSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIH 648 Query: 647 ILAEDFPSIRGKVDRLFLGPP-------TGWPVQMRVM-GPDRKEVRAIADQVKARFEAN 698 + IR F P TG+ ++ G + +Q+ + Sbjct: 649 RAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQH 708 Query: 699 P-MLGAIHDDWLEQVPAMKLVIDQDRARALGVTSQRVRQVLQTAMSGAPLDDFRDGEETV 757 P L ++ + LE KL +DQ++A+ALGV+ + Q + TA+ G ++DF D Sbjct: 709 PASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVK 768 Query: 758 SIVAREPDANRSLLSAVNSVYVPTDFGGFVPVSQVAKVVPVMEQGIEWRRDRLPTITIRA 817 + + R L V+ +YV + G VP S V R + LP++ I+ Sbjct: 769 KLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG 828 Query: 818 TLPDGVQPNDVVMKMYADMKDLRDSLPAGYNVEIQGGAEDAAESQMSIAAKAPIMLAVII 877 G D + A M++L LPAG + G + S A I V+ Sbjct: 829 EAAPGTSSGDAM----ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVF 884 Query: 878 VLLMVQLQHFGKAMLVLATGPLGIIGAAAALLISGAPFGFVAILGVIALLGIIMRNSIIL 937 + L + + + V+ PLGI+G A + ++G++ +G+ +N+I++ Sbjct: 885 LCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILI 944 Query: 938 VDQIDQ-DIKAGMQRQEAIVGAAVRRFRPIMLTALTAVLALIPISRGVFWG-----PLAY 991 V+ K G EA + A R RPI++T+L +L ++P++ G + Sbjct: 945 VEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGI 1004 Query: 992 AMMGGILVATVLTILVLPAGYALF 1015 +MGG++ AT+L I +P + + Sbjct: 1005 GVMGGMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 40.6 bits (95), Expect = 7e-06 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 9/129 (6%) Query: 76 VSGKITERLVDIGDRVTPGDVLARVDATDYQLAVKTAEANLAAAE------RGVETADLA 129 + + E +V G+ V GDVL ++ A + +++L A + + + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 130 NKRAEQLFDKSVAPKSQLEQAALSHDQAI-SQRDAARSALDQAKNQVSYTELKAGQNGIV 188 NK E ++ E+ L I Q ++ Q +++ + +A + ++ Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQK--ELNLDKKRAERLTVL 220 Query: 189 TAINADIGQ 197 IN Sbjct: 221 ARINRYENL 229
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 2e-16 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 15/160 (9%) Query: 19 RILDAAERLFRHYGYSKTTVADIARDLGMSPANIYRFFASKVEIHQALCGRMLATAYQIA 78 ILD A RLF G S T++ +IA+ G++ IY F K ++ + + ++ Sbjct: 15 HILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELE 74 Query: 79 YD-IRHQPVSASERLRRYVKTQHQLTLDLMLDEMKVHEMIIVAI-----ERDWHVIEKHI 132 + P LR + L+ + E + ++ + + V+++ Sbjct: 75 LEYQAKFPGDPLSVLREILIH----VLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQ 130 Query: 133 D----RVHDLIAEIIAEGIAAGEFAEQ-DPVVASRCFGAA 167 +D I + + I A A+ Sbjct: 131 RNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGY 170
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 136 bits (344), Expect = 3e-41 Identities = 81/251 (32%), Positives = 121/251 (48%), Gaps = 4/251 (1%) Query: 5 LQGKNILITGAAQGIGLAIAKAFISENAAVYLVDRDAAVLARAATDLASIGARVGYLPAD 64 ++GK ITGAAQGIG A+A+ S+ A + VD + L + + L + PAD Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 65 ITDAGTITRVVAEANEEIGPLNALVNNAGVNVFAEPLATTDDEWNRCFDINLKGAWNCCK 124 + D+ I + A E+GP++ LVN AGV + +D+EW F +N G +N + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 125 AVLPGFIERGGGVILNIASTHAFTIIPHTFPYPLAKHALLGMTKSLGLEYAPRNIRVNAL 184 +V ++R G I+ + S A Y +K A + TK LGLE A NIR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 APGYVSTQKVIDYWNSFPDPEAAKAG---TMKLH-PGGRIATPEEIAMAAVFMISDECPF 240 +PG T W E G T K P ++A P +IA A +F++S + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 241 MNATCLTIDGG 251 + L +DGG Sbjct: 246 ITMHNLCVDGG 256
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.3 bits (89), Expect = 1e-04 Identities = 47/251 (18%), Positives = 87/251 (34%), Gaps = 52/251 (20%) Query: 569 KSVIGQGDAVQAVSRAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDET 628 ++G+ A+Q + R + R + + + G +G GK + +AL + Sbjct: 137 MPLVGRSAAMQEIYRVLARLMQT----DLTL---MITGESGTGKELVARALHDYGKRRNG 189 Query: 629 AMVRMDMSEYMEKHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQV-------VLFDEIE 681 V ++M+ + L G E GA T A R + + DEI Sbjct: 190 PFVAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIG 241 Query: 682 KAHPDVFNILLQVLDDG---RLTDGQGRTVDFRNTMIIMTSNLGAEYLTQLPDGEDSDSV 738 D LL+VL G + D R I+ +N Sbjct: 242 DMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN------------------ 280 Query: 739 REQVMEVVRGHFRPEFLNRIDEIILF---HRLKREEMGAIVDIQLKRLVALLSERKIVID 795 ++ + +G FR + R++ + L R + E++ +V +++ E V Sbjct: 281 KDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEK---EGLDVKR 337 Query: 796 LDEEARHWLAN 806 D+EA + Sbjct: 338 FDQEALELMKA 348
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 36.3 bits (83), Expect = 9e-05 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Query: 125 DTSDNDGDDVVVVQPPQ---SRQHQPQAQPKPAPAPVAAPAPAPQPEIIDGTGPQPEIE- 180 D+ N DV V+ P P AQP P +P PA P P GT P PE + Sbjct: 298 DSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDP 357 Query: 181 GIPAEVAMDEEGSAGQSRERQPRRRSPGNRPRRPRR-GADG 220 + + D +G G + P R R+ R+ G DG Sbjct: 358 DLNPDANPDTDGQPGTRPDSPAVPDRPNGRHRKERKEGEDG 398
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 579 bits (1495), Expect = 0.0 Identities = 172/553 (31%), Positives = 288/553 (52%), Gaps = 3/553 (0%) Query: 182 TIDGDTYNDGIGLGYVVLH-EPRIVVTNLLNEDAEKEIRRLAEAMGSLRISIDDMLSRRD 240 I G + G+ + +H EP + + D EI +L A+ + + + + + Sbjct: 4 KITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQTE 63 Query: 241 VSMEGEHREVLETYRMFAHDQGWVRKLEEAIRN-GLTAEAAVEKVQSDTKARMMRLTDPY 299 SM + E+ + + D V ++ I N + AE A+++V + + + Y Sbjct: 64 ASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDNEY 123 Query: 300 LRERMHDFEDLANRLLRQLTGYTGRTTAEGFPSDAIILARAMGAAELLDYPRANVRGLVL 359 ++ER D D++ R+L L G + A + +I+A + ++ + V+G Sbjct: 124 MKERAADIRDVSKRVLGHLIGVETGSLAT-IAEETVIIAEDLTPSDTAQLNKQFVKGFAT 182 Query: 360 EEGAVTSHVVIVARAMGIPVIGQAAGVVALAENGDAVIIDADEGHVHLRPMADHRRSYEE 419 + G TSH I++R++ IP + V ++GD VI+D EG V + P + ++YEE Sbjct: 183 DIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEE 242 Query: 420 KVRFRARRQEQFRALRAIEPVTRDGQRISLMMNAGLLVDLPQLSESGAEGIGLFRTELQF 479 K ++++++ L T+DG + L N G D+ + +G EGIGL+RTE + Sbjct: 243 KRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLY 302 Query: 480 MIASTMPKADEQEQFYRNVIKQAAGRVVTFRTLDIGGDKVVPYFRGHEEENPALGWRAIR 539 M +P +EQ + Y+ V+++ G+ V RTLDIGGDK + Y + +E NP LG+RAIR Sbjct: 303 MDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAIR 362 Query: 540 LSLDRPGLLRTQLRALLKASADTELKLMVPMVTEVSELKTVRELLQKEVQHLSRFGHGLP 599 L L++ + RTQLRALL+AS LK+M PM+ + EL+ + ++Q+E L G + Sbjct: 363 LCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVS 422 Query: 600 RKLQFGAMLEVPALLWQLDELMAAVDFVSVGSNDLFQFSMAVDRGNARVSDRFDPLGKPF 659 ++ G M+E+P+ + VDF S+G+NDL Q++MA DR N RVS + P Sbjct: 423 DSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPAI 482 Query: 660 LRILRDIVRGANRNKTPVTLCGELAGKPLSAMALLGIGFRSISMSPASIGPVKAMLLGLD 719 LR++ +++ A+ V +CGE+AG ++ LLG+G SMS SI P ++ LL L Sbjct: 483 LRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLS 542 Query: 720 VEALAKVMDEVLD 732 E L + L Sbjct: 543 KEELKPFAQKALM 555
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 27.4 bits (61), Expect = 0.020 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 17/87 (19%) Query: 57 KKDERQTLAMDAMRQEALQKLKEA------VAAVKANSEDVGTKFPEEARKIHYGEADAR 110 + + +L + A++Q L +++A + VKAN+ G + A A Sbjct: 2 TRPIQASLDLQALKQN-LSIVRQAATHARVWSVVKANAYGHGIERIWSA-------IGAT 53 Query: 111 GIIGQATLDEAQALVEEGIEIAAIPVL 137 L+EA L E G + P+L Sbjct: 54 DGFALLNLEEAITLRERGWK---GPIL 77