>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 28.7 bits (64), Expect = 0.034 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 11/104 (10%) Query: 27 EAYVEDQKLKGEKLD-----YVAICS--PNYLHAPHMKYALKNGIDVICEK---PLVLNS 76 E Y+ + L+ +L+ CS P Y + + N I+VI K Sbjct: 187 EKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSSTHRGQ 246 Query: 77 EDLNMLAEYEKQYGAKVNSILQLRLHPSIIALRDKVQAAPADKV 120 +L ++ +Y K + +RL+ ++ LRD V+ + +K+ Sbjct: 247 SELCGKV-FKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKI 289
>PF04183#IucA / IucC family Length = 580 Score = 28.7 bits (64), Expect = 0.029 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 9/113 (7%) Query: 52 QKKKFDLLAEITQIVPEHVSVVSVRQ-PQPLGLGHAVLCAKSV---VGQDDFAVLLPDVL 107 + +L E H ++ + P V+ ++ + D+ VL+ ++ Sbjct: 313 VQSGAVILGEPAAGYVSHEGYAALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLM 372 Query: 108 VKDSSGKNDLSRMIARYNSSQAAQI--MVEAVPD---HLVDQYGIVDVKHSPN 155 D + + I R + + V HL+ +YG+ + H N Sbjct: 373 ECDENNQPLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQN 425
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.5 bits (68), Expect = 0.015 Identities = 10/24 (41%), Positives = 20/24 (83%) Query: 5 LRLPSEYSKFPELTKQVHTQLQRM 28 +RL S+YS+FPE+ + + +Q++R+ Sbjct: 152 MRLMSDYSRFPEVKELMESQMERL 175
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 126 bits (317), Expect = 3e-36 Identities = 59/293 (20%), Positives = 110/293 (37%), Gaps = 33/293 (11%) Query: 1 MEGDIRNSGELDQVFQEHAIDAVIHFAGLKAVGESQEKPLIYFDNNIAGSIQLVKSMEKA 60 + D+ + + +F + V AV S E P Y D+N+ G + +++ Sbjct: 57 HKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHN 116 Query: 61 GVYTLVFSSSATVYDEANTSPLNEEMPTGMPSNNYGYTKLIVEQLLQKLSVADSKWSIAL 120 + L+++SS++VY P + + P + Y TK E + S Sbjct: 117 KIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYS-HLYGLPATG 175 Query: 121 LRYFNPVGAHKSGRIGEDPQGIPNNLMPYVTQVAVGRREKLSIYGNDYDTIDGTGVRDYI 180 LR+F G P G P+ + T+ A+ + + +Y G RD+ Sbjct: 176 LRFFTVYG----------PWGRPDMALFKFTK-AMLEGKSIDVYN------YGKMKRDFT 218 Query: 181 HVVDLANAHLCALNNRLQAQGC---------------RAWNIGTGNGSSVLQVKNTFEQV 225 ++ D+A A + + A R +NIG + ++ E Sbjct: 219 YIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDA 278 Query: 226 NGVPVAFEFAPRRAGDVATSFADNARAVAELGWKPQYGLEDMLKDSWNWQKQN 278 G+ P + GDV + AD +G+ P+ ++D +K+ NW + Sbjct: 279 LGIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDF 331
>PF04183#IucA / IucC family Length = 580 Score = 30.6 bits (69), Expect = 0.018 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 387 ALRRNDREWVEQLPAEMEKKIIHKLYYGHFFCHVFHQDYILKKGNDPLEMEHQMWKLLDA 446 +L + R+ +L A+ +IH L GHF + ++ + P E + ++LL A Sbjct: 459 SLPQEVRDVTSRLSADY---LIHDLQTGHFVTVLRFISPLMVRLGVP---ERRFYQLLAA 512 Query: 447 RRAEYPAEHNVGHLYIAKPALANFYQKLD 475 ++Y +H P ++ + Sbjct: 513 VLSDYMKKH---------PQMSERFALFS 532
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 32.8 bits (74), Expect = 0.001 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Query: 211 LALYPLSAFRAMNK----AAETVYETLRKEGTQKNVVDIMQTRKEL 252 L LY F MNK E + E+L+KEG +K+ +D+++ K L Sbjct: 257 LELYAPDMFEYMNKLEKGGFEKISESLKKEGVEKDRIDVLKGEKAL 302
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 360 bits (926), Expect = e-126 Identities = 171/340 (50%), Positives = 226/340 (66%), Gaps = 10/340 (2%) Query: 1 MPNSKVFAVVKANAYGHGIERVYEAFKAADGFALLDLDEAKRIRALGWTGPILLLEGIFS 60 +++V++VVKANAYGHGIER++ A A DGFALL+L+EA +R GW GPIL+LEG F Sbjct: 25 ATHARVWSVVKANAYGHGIERIWSAIGATDGFALLNLEEAITLRERGWKGPILMLEGFFH 84 Query: 61 PQDLFDCVQYQLSFTIHSEAQIEWVEQHPYPAQFDVFLKMNSGMNRLGFKPQHYVQAWER 120 QDL Q++L+ +HS Q++ ++ A D++LK+NSGMNRLGF+P + W++ Sbjct: 85 AQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVNSGMNRLGFQPDRVLTVWQQ 144 Query: 121 LNNLANVAKITHMMHFSDADGDRFGQQGIDYQITAFEEIVKDLPGERSVSNSAAILRYQD 180 L +ANV ++T M HF++A+ GI + E+ + L RS+SNSAA L + + Sbjct: 145 LRAMANVGEMTLMSHFAEAEH----PDGISGAMARIEQAAEGLECRRSLSNSAATLWHPE 200 Query: 181 QLKSDYVRSGIMLYGSSPDYPTHSIADWGLQPTMSLRSEIISVQHLEPNESVGYGSNFVA 240 D+VR GI+LYG+SP IA+ GL+P M+L SEII VQ L+ E VGYG + A Sbjct: 201 -AHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTA 259 Query: 241 EQPMTIGIVACGYADGYQRISPTGTPVLVDSVRTRTVGRVSMDMLAVDLTGIESAKVGSE 300 IGIVA GYADGY R +PTGTPVLVD VRT TVG VSMDMLAVDLT A +G+ Sbjct: 260 RDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTP 319 Query: 301 VVLWGQSSTGVVLPIDDVAVSSGTVGYELMCAVTARVQFI 340 V LWG+ + IDDVA ++GTVGYELMCA+ RV + Sbjct: 320 VELWGKE-----IKIDDVAAAAGTVGYELMCALALRVPVV 354
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 81.0 bits (200), Expect = 4e-22 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 4/105 (3%) Query: 6 ESNIIGCARLLPTTQPYLLGEIFPQLLNGMPIPCSPEIWELSRFSAVDFSNPPSSSSQAV 65 ++ +I R + T P ++ F + IP E SRF VD S Sbjct: 60 DNTVICSLRFIETKYPNMITGTFFPYFKEINIPEGN-YLESSRF-FVDKSRAKDILGNE- 116 Query: 66 SSPVSIAILQEAINFAREQGAKQLITTSPLGVERLLRAAGFRAHR 110 P+S + IN+++++G + T + +L+ +G+ Sbjct: 117 -YPISSMLFLSMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRV 160
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 26.9 bits (59), Expect = 0.008 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 12 IRTLVAKEMRVEPETIDPDQKFTSYGLDSIVALSVSGDLEDLTKL--ELEPTLLWDYPTI 69 IR +A+ ++ PE I + GLDS+ +++ +E + E+ L + PTI Sbjct: 235 IRKQIAELLQETPEDITDQEDLLDRGLDSVRIMTL---VEQWRREGAEVTFVELAERPTI 291 Query: 70 NALAEYLVSELQQ 82 + L + QQ Sbjct: 292 EEWQKLLTTRSQQ 304
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 52.9 bits (127), Expect = 1e-10 Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 16/164 (9%) Query: 9 EAPLNKLLSN-----NKKAIALLDSGILSILPQRNTRGAALPNTVDTHVWLEPNNAVRIG 63 A KL+ N NK A+ S + ++ G D H WL N + Sbjct: 97 NAWFTKLVENAKKTENKDYFAV--SDGVDVIY---LEGQNEKGKEDPHAWLNLENGIIFA 151 Query: 64 FFIAALRSQQHPENKAKYWNNANTFARNMLQAAQAYDS-----SSNGKPYWSYHDAYQYL 118 IA S + P NK Y N + + + + + K + A++Y Sbjct: 152 KNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYF 211 Query: 119 ERSLNLKFAGALTDDPHVAPTAAQIKYLND-SRPKAQMCLLAES 161 ++ + A + T QIK L + R L ES Sbjct: 212 SKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVES 255
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.8 bits (93), Expect = 1e-05 Identities = 55/272 (20%), Positives = 96/272 (35%), Gaps = 23/272 (8%) Query: 1 MAAIAAPLLPVSVKQLDRRYVLILLTAIMVIANTITAFAENFHVLLLSRLILGISIGGFW 60 M AP+L + RR VL++ A + I A A VL + R++ GI+ G Sbjct: 55 MQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATG 113 Query: 61 ATAIALSGKLAPANLPIAKATAVVMAGVTFATVLGVPIGTWLSEFYGWRSAFGITAAIGL 120 A A A + + A+ + A F V G +G + + + F AA+ Sbjct: 114 AVAGAYIADITDGD-ERARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNG 171 Query: 121 VVLVLQLIFLP-------KLLPESAIHIRDLPALLRTPKARSGMLIV-LLIGLAHFCAYS 172 + + LP + L A++ R + ++ V ++ L + Sbjct: 172 LNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAA 231 Query: 173 YLAPFFKNVAGFNGTTISSLLLLYGIAGIFGNAFAG------YSGNLNVRYTLAFVGTCF 226 F ++ ++ TTI L +GI A + + GT + Sbjct: 232 LWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGY 291 Query: 227 AIVFFG------FPIFAIHEFGAIVLTALWGF 252 ++ F FPI + G I + AL Sbjct: 292 ILLAFATRGWMAFPIMVLLASGGIGMPALQAM 323
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 430 bits (1108), Expect = e-152 Identities = 176/398 (44%), Positives = 254/398 (63%), Gaps = 17/398 (4%) Query: 25 VLVINCGSSSIKYALV-SERREDRIYGLAENLGAADARIKGITVGGEPLELSIPYADHAK 83 +LVINCGSSS+KY L+ S+ GLAE +G D+ + GE +++ DH Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGLAERIGINDSLLT-HNANGEKIKIKKDMKDHKD 61 Query: 84 ALETLLARLANYKPQ---------AIGHRVVHGGSL-TKAELLTPEIVERIRAATPLAPL 133 A++ +L L N A+GHRVVHGG T + L+T ++++ I LAPL Sbjct: 62 AIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIELAPL 121 Query: 134 HNPAHLIGIEATMRLFPELPQVAVFDTAFHQTMPAHAYRYAIPKFLYTEHNVRRYGFHGT 193 HNPA++ GI+A ++ P++P VAVFDTAFHQTMP +AY Y IP YT++ +R+YGFHGT Sbjct: 122 HNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGFHGT 181 Query: 194 SHAYVSDRGSELAGKFQKG-GWLTAHLGNGSSTCAVWNGQSVDTSMGLTPLEGVVMGTRS 252 SH YVS R +E+ K + +T HLGNGSS AV NG+S+DTSMG TPLEG+ MGTRS Sbjct: 182 SHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMGTRS 241 Query: 253 GDVDPSLHSFLAKNLGWDLAKIDKVLNNESGLLGLSQLSNDMRTVIEAA-ENGNEDACLA 311 G +DPS+ S+L + ++ +LN +SG+ G+S +S+D R + +AA +NG++ A LA Sbjct: 242 GSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRAQLA 301 Query: 312 IEVFSYRLAKSLAALSCGLPSIDGLIFTGGIGENSAYIREKTLAYLPHFGLQLDKDQNNN 371 + VF+YR+ K++ + + + +D ++FT GIGEN IRE L L G +LDK++N Sbjct: 302 LNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEKNKV 361 Query: 372 LKRGTEGRIDS-GTGPQIWVIPTDEEGRIAKETRQVVE 408 RG E I + + + V+PT+EE IAK+T ++VE Sbjct: 362 --RGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIVE 397
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 29.8 bits (67), Expect = 0.038 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 18/89 (20%) Query: 442 VLGVLQDQG---FHVALVTDGRMSGASGKVPAVIHLSPEALLNGPIGKVQTGDMLIIDAE 498 V G D G H A+ MS + +PAV+ K+Q GDM+I+D Sbjct: 177 VKGFATDIGGRTSHSAI-----MSRSLE-IPAVVGTKEVTE------KIQHGDMVIVDGI 224 Query: 499 AGVLDIELDE---QTWQSRPVAQPEHQAE 524 G++ + E + ++ + A + + E Sbjct: 225 EGIVIVNPTEEEVKAYEEKRAAFEKQKQE 253
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 30.3 bits (68), Expect = 0.006 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 5 GAIQKSVMLTIIAAAVGVALFFYAAFTANVGIAYAASIVGAIGGLVLALIT 55 GAI S+ + L A+ ++ + A S+VGA ++ +T Sbjct: 362 GAIDASL------TTISTVL---ASVSSGISAAATTSLVGAPVSALVGAVT 403
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 61.2 bits (148), Expect = 4e-13 Identities = 68/263 (25%), Positives = 100/263 (38%), Gaps = 27/263 (10%) Query: 6 LAGKRFLIAGVASKLSIAYGIAQALHREGAEL-AFTYPNEKLKKRVDEFAEQFGSKLVFP 64 + GK I G A I +A+ L +GA + A Y EKL+K V + FP Sbjct: 6 IEGKIAFITGAAQ--GIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 65 CDVAVDAEIDNAFAELAKHWDGVDGVVHSIGF---APAHTLDGDFTEVTDRDGFKIAHDI 121 DV A ID A + + +D +V+ G H+L + E T F + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEAT----FSVN--- 116 Query: 122 SAYSFVAMARAAKPLLQARQGCLLTLTYQGSERVMPNYNVMGMAKASLEAGVRYLASSLG 181 S F A +K ++ R G ++T+ + + +KA+ + L L Sbjct: 117 STGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA 176 Query: 182 VDGIRVNAISAGPIRTL-----------AASGIKSFRKMLDANEKVAPLKRNVTIEEVGN 230 IR N +S G T A IK + PLK+ ++ + Sbjct: 177 EYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTG---IPLKKLAKPSDIAD 233 Query: 231 AALFLCSPWASGITGEILYVDAG 253 A LFL S A IT L VD G Sbjct: 234 AVLFLVSGQAGHITMHNLCVDGG 256
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 41.0 bits (96), Expect = 3e-06 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 21/159 (13%) Query: 13 QLIAQIDSTTQENSLKTSDANIKNLEAQRLQQIASLNEKQLEYRRQQQMYAQDATPRADL 72 Q IA+ QEN + ++ ++Q Q + + + EY+ Q++ + Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL----- 301 Query: 73 ESAEAAYKTAQAQVKALDAQIESAKITRSTAQTNIGYTRIVAPTDGTVVAI-VTEEGQTV 131 + + L ++ + + I AP V + V EG V Sbjct: 302 ----DKLRQTTDNIGLLTLELAKNEE-------RQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 132 NANQSAPTIVKIAKLQN-MTIKAQVSEADIMKVEKGQQV 169 + T++ I + + + A V DI + GQ Sbjct: 351 TTAE---TLMVIVPEDDTLEVTALVQNKDIGFINVGQNA 386 Score = 36.3 bits (84), Expect = 9e-05 Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 9/134 (6%) Query: 2 YVQLGDQVKQGQLIAQIDSTTQENSLKTSDANIKNLEAQRLQQIASLNEKQLEYRRQQQM 61 V+ G+ V++G ++ ++ + ++A+ ++ LQ Q+ R + Sbjct: 111 IVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQTRYQILSRSIELN 163 Query: 62 YAQDATPRADLESAEAAYKTAQAQVKALDAQIESAKITRSTAQTNIGYTRIVAPTDGTVV 121 + + + + + Q + + Q + + A + Sbjct: 164 KLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ--NQKYQKELNLDKKRAERLTVLA 221 Query: 122 AIVTEEGQTVNANQ 135 I E + Sbjct: 222 RINRYENLSRVEKS 235
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 32.5 bits (74), Expect = 0.005 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 18/147 (12%) Query: 18 LLLNGLLLAAAISIVHIVGMHAYHLFEAASSNVPLITLAFGISAVLSSVAIWLTSRFTLP 77 LLL G+++ S++ VG H++ + + A + V+ VA ++ Sbjct: 81 LLLFGIIINCFGSVIGFVG-HSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGK 139 Query: 78 IFRLILSSVIMGIGISASY---YVSMLGWNIDIYKKDYTSFLILFSVLIAMSGSGLAFLL 134 F LI S V MG G+ + + W S+L+L ++ ++ L Sbjct: 140 AFGLIGSIVAMGEGVGPAIGGMIAHYIHW----------SYLLLIPMITIITV----PFL 185 Query: 135 AYKLKESERHRISLKLAFAVMMTLSIM 161 LK+ R + + ++M++ I+ Sbjct: 186 MKLLKKEVRIKGHFDIKGIILMSVGIV 212
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 58.9 bits (142), Expect = 3e-13 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 18/160 (11%) Query: 1 MTLFNQKSYTSIGVDKIIAESKVAKMTFYKYFSSKEVLIEECLRR---RILEVQTSLLDK 57 + LF+Q+ +S + +I + V + Y +F K L E I E++ K Sbjct: 21 LRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAK 80 Query: 58 VNSADDPLNKLKSIFNWYIDWINTED----FSGCLFKKATIEVLQLYPSIKKQVNKYREW 113 DPL+ L+ I ++ TE+ +F K E + +++ Sbjct: 81 F--PGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC--EFVGEMAVVQQAQRNLCLE 136 Query: 114 IYSLVLSIFLE-------LEIEDPKVLSSLFLNIIDGLII 146 Y + + + + I GL+ Sbjct: 137 SYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLME 176
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 166 bits (421), Expect = 1e-53 Identities = 67/182 (36%), Positives = 90/182 (49%), Gaps = 9/182 (4%) Query: 2 LDRHVLRPVAVEYREKTPEDVRGSYRQFRKNLGEPWNAVNQLIQGRPGRAAKTLGRFTIN 61 LD +++RPVAV +R+ P+ R F NL EP VN +QG P + RF +N Sbjct: 47 LDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLN 106 Query: 62 T-LTTLGLADPASRLGLPP---EEESFGVTLGYYGVPSGPFLMLPFFGPSTLRDGVGLAV 117 T L G D A E FG TLG+YGV GP++ LPF+G TLRD G Sbjct: 107 TILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMA 166 Query: 118 DAQARPQKYIMDDQDGLYWSTNLLQAVDTRAQYLDLDQTIQG--DQYAMIRDLYLQRKAF 175 DA ++ W+ L+ ++TRAQ LD D ++ D Y M+R+ Y QR F Sbjct: 167 DALYPVLSWLTWPMSVGKWT---LEGIETRAQLLDSDGLLRQSSDPYIMVREAYFQRHDF 223 Query: 176 QI 177 Sbjct: 224 IA 225
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 37.3 bits (86), Expect = 7e-06 Identities = 16/129 (12%), Positives = 39/129 (30%), Gaps = 9/129 (6%) Query: 2 TFYKHFPSKTLLIQACLCEEQKTIEESI---LNELSLLSEAGNIARLKALLNWHVAYINQ 58 Y HF K+ L + I E + + L +L V + Sbjct: 47 AIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERR 106 Query: 59 QNFNGCLFQKAVYENEVSEEVLSVIQAHKQWKFKLVSDLM------EVPECCTAFVSSSM 112 + +F K + E++ + + ++ L +P ++ + Sbjct: 107 RLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAII 166 Query: 113 VYSMLEGML 121 + + G++ Sbjct: 167 MRGYISGLM 175
>ENTEROTOXINB#Heat labile enterotoxin B chain signature. Length = 124 Score = 28.9 bits (64), Expect = 0.015 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 213 GKKGIPHLKFKNGQVYQHKLEGSEEHSIVIASQDIVETENGLIVSLLAHQKVNKLKIFKS 272 GK+ + + FKNG ++Q ++ GS+ I + I ++ L ++ L KV KL ++ + Sbjct: 54 GKREMAIITFKNGAIFQVEVPGSQH--IDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNN 111 Query: 273 LCKYAISVLPAE 284 +AI+ + Sbjct: 112 KTPHAIAAISMA 123
>cloacin#Cloacin signature. Length = 551 Score = 40.1 bits (93), Expect = 3e-05 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 7/80 (8%) Query: 683 GETNLGQNVGRAANPAAGYYNTSGGGRGGSGGGSGGNGGGGSPAG----GGGAGTRGDGS 738 G T LG G + N GG GSG GG G G+ G GGG+GT G+ S Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLS 82 Query: 739 VL---MNKGQPNEQSSGAQT 755 + + G P + GA Sbjct: 83 AVAAPVAFGFPALSTPGAGG 102 Score = 39.3 bits (91), Expect = 5e-05 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%) Query: 704 TSGGGRGGSGGG--SGGNGGGGSPAGGGGAGTRGDGSVLMNKGQPNEQSSGAQTHLPNAT 761 + G GRG + G + GN GG G G G DGS ++ P SG+ H + Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGA-SDGSGWSSENNPWGGGSGSGIHWGGGS 60 Query: 762 PSSSNSNWQSAAAAGAREGGIGGAIASSVSF---------AGRRGLQNEASAGTSVLSDV 812 N + G+ GG A+A+ V+F AG + A A ++ ++D+ Sbjct: 61 -GHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADI 119 Query: 813 NA 814 A Sbjct: 120 MA 121
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 30.5 bits (69), Expect = 0.009 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 37/186 (19%) Query: 170 GCAIIDIGGRTTDIAMINPRGGTMQASRC----DTLDVGIITLKNKVSQNLKEFFGLSSN 225 G ++DIGG TT++A+I+ G + +S D D II ++ +G Sbjct: 160 GSMVVDIGGGTTEVAVIS-LNGVVYSSSVRIGGDRFDEAIINY-------VRRNYGSLIG 211 Query: 226 I-TDWRLSKALKTGIYNHGGKDHDI-----------SKILNAAKV-----EITDQIENSI 268 T R+ + + ++ ++ LN+ ++ E I +++ Sbjct: 212 EATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAV 271 Query: 269 KVNVQDGQ-DLGA------VLLVGGGSITLG-DELLKRFNYDNWHLVKQPEFANARGMYK 320 V ++ +L + ++L GGG++ D LL + + P ARG K Sbjct: 272 MVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGK 331 Query: 321 CAKYIS 326 + I Sbjct: 332 ALEMID 337
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 31.4 bits (71), Expect = 0.006 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 20/112 (17%) Query: 235 DLVPPDQQHRKLTETISTAHAFIAQRLVETPEGKLIGVREHLFFSKSIRNDLLDLAIQAG 294 D P Q + T + A + Q + + +GKLI S++ D+LDL I Sbjct: 26 DKNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLI----------SVKTDVLDLTINTR 75 Query: 295 GYGLVIQ-----YIRKMMNDNPQGTENSSPNFENQAKDLLNKGLISKKGFDA 341 G G V Q Y +++ + P +SP F QA+ GL + G D Sbjct: 76 G-GDVEQALLPAYPKELNSTQPFQLLETSPQFIYQAQ----SGLTGRDGPDN 122
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.015 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 289 GLVSGGGIGAAGGIGNFGAGAAVGAAVTAASMATGGAALAGKAVMGAAAGAAGGASALQA 348 G SG G G G G+G + AA +A G AL+ G A + G AL A Sbjct: 57 GGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAG--ALSA 114 Query: 349 AFQKASASME 358 A A+++ Sbjct: 115 AIADIMAALK 124
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.6 bits (118), Expect = 8e-10 Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 17/179 (9%) Query: 7 SSKKLQVVQTAIQLFTTHGFHNAGVDLIIKEAKIPKATFYNYFHSKERLIEMCIAFQKSL 66 + ++ A++LF+ G + + I K A + + Y +F K L +S Sbjct: 10 QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESN 69 Query: 67 LKEEVLSIIYSSRYYTQKDKLKEIIVLHTNLNSLYHLLLKAVFEIKRLYPQAYRMAV--- 123 + E+ + L+EI++ + I MAV Sbjct: 70 IG-ELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 124 -------EYRKWLHRELFDLIFSCETRAFKFD----ADMVLNLIDGLLLQ-VLSSNSVD 170 E + + L I + A A ++ I GL+ + + S D Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPA-DLMTRRAAIIMRGYISGLMENWLFAPQSFD 186
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 83.5 bits (206), Expect = 8e-19 Identities = 58/281 (20%), Positives = 85/281 (30%), Gaps = 56/281 (19%) Query: 590 DTLNGGWGNDKLNGGAGQDTLIGG----SGNAVMTGGDYEKDIYIFQSGHGQDIINDKSY 645 + G N G D + N GD +Y F S +D Sbjct: 231 ENETGADYNGHYGGAPMIDDIAAIQRLYGANMTTRTGD---SVYGFNSNTDRDFYTATDS 287 Query: 646 DWTNLQYFNDVKFEGANFTDAQFLRVGNDLVIKAFGTDDSVSFKNYLNDNDSYSRDFNFI 705 V G T N + G+ V Sbjct: 288 SKA---LIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVG------------------ 326 Query: 706 FADKTLTTADVMNIVIPLNGTDGNDVQNGWKGKDNLLGSLGDDTLNGLAGDDWLEGGAGN 765 G GN +N +G G+D L G + D+ L+GGAGN Sbjct: 327 -------------------GLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGN 367 Query: 766 DILNGGEGNDLLEGGAGNDTLTGGIGADTAIFKILAGFGND-ATGGNGVDTWSDFNISQG 824 D+L GG G D L GGAG DT G G D+ + + D G + +D + N Q Sbjct: 368 DVLYGGAGADTLYGGAGRDTFVYGSGQDSTVAA--YDWIADFQKGIDKIDLSAFRNEGQL 425 Query: 825 DKINISELIIGPASKENLNQFVSFEKSGSTVTLSLDRDGND 865 + + + + ++ + S L L G+ Sbjct: 426 SFVQDQ------FTGKGQEVMLQWDAANSITNLWLHEAGHS 460 Score = 69.6 bits (170), Expect = 2e-14 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 9/149 (6%) Query: 574 IIGTKLDDTLNGTKNNDTLNGGWGNDKLNGGAGQDTLIGGSGNAVMTGGDYEKDIYIFQS 633 I + G ND L G ++ L GGAG D L GG+G + GG +D +++ S Sbjct: 334 IAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYGGA-GRDTFVYGS 392 Query: 634 GH-----GQDIINDKSYDWTNLQYFNDVKFEGANFTDAQFLRVGNDLVIKAFGTDDSVSF 688 G D I D + +F QF G +++++ + + Sbjct: 393 GQDSTVAAYDWIADFQKGIDKIDLSAFRNEGQLSFVQDQFTGKGQEVMLQWDAANSITNL 452 Query: 689 KNYLNDNDSYSRDFNFIFADKTLTTADVM 717 + + S DF + +D++ Sbjct: 453 WLHEAGHS--SVDF-LVRIVGQAAQSDII 478
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 47.7 bits (113), Expect = 2e-09 Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 17/152 (11%) Query: 2 AELAGVSIGSLYQYFPSKDALIVELIRRERAKLSNHIVEVIQQSDAADLKDKLKLIIQAA 61 A+ AGV+ G++Y +F K L E+ + + +E + D L+ I+ Sbjct: 38 AKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAK-FPGDPLSVLREILIHV 96 Query: 62 VQHQLSRPQLARTLEFASELIGKDIEESEHQHELETIISDLFKRSGVSHAQTAAQDVIAL 121 ++ ++ + +E + E E+ + + + Sbjct: 97 LESTVTEERRRLLMEI-------IFHKCEFVGEMAVVQ---------QAQRNLCLESYDR 140 Query: 122 SKGMINAAGIVGESDLNHLQQRVEKAVFGYLD 153 + + + + +R + GY+ Sbjct: 141 IEQTLKHCIEAKMLPADLMTRRAAIIMRGYIS 172
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 33.9 bits (77), Expect = 0.004 Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 19/278 (6%) Query: 208 GNGSGDGAGNGIASGNGEHNYGIGNGNGDDVDITAPITGVLNISGNSFTLIGNSSSSSVN 267 N G GAG +S G + ++ +I+ LN++ NS L+GN + Sbjct: 204 NNRVGSGAGRKASSTVLTLQASEGITSRENAEISLYDGATLNLASNSVKLMGNVWMGRLQ 263 Query: 268 TAPTTTS---NTVNDNDTIDNGNSGGTGSGSGNGSGDGLLNGAASGNGEHNYGIGNGNGD 324 + +T+N + N G N + G++ + G + G Sbjct: 264 YVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAG--- 320 Query: 325 DVDITAPITGVFNFSGNSFSLIGNSSSSSINTAPTTTTNTVNDNDVTDNGNDG------G 378 ++I AP G + N + +++ N ++ N N V + N Sbjct: 321 -LNIIAPPEGGYKDKPND-KPSNTTQNNAKNDKQESSQNNSN-TQVINPPNSAQKTEIQP 377 Query: 379 GLVGGSSGNGSGDGLLNGAASGNGEHNYGIGNGNGDDADFTFPLTGVLNFSGNSLSGFGS 438 V G + ++N N + I G + T L+ ++ Sbjct: 378 TQVIDGPFAGGKNTVVN-INRINTNADGTIRVGGFKASLTTN--AAHLHIGKGGINLSNQ 434 Query: 439 SSSDSVNVAPTTATNTVNDNDTIDNANTG-GLGGGSGN 475 +S S+ V T TV+ ++N G L G S N Sbjct: 435 ASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSAN 472
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 5e-10 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 2 LPGADGLTVCREVRPHY-HQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIR 60 +P + + ++ P+L+++A+ M + E GA DY+ KP L+ I Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 61 ALLRRTDKTVEDEVAQRIEFDDLV 84 L + + LV Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPLV 140
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 3e-05 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 31/150 (20%) Query: 323 VAVETEALKTQKEIELI--PPPLYVKVDAERRYLHRVV-----QNLVGNAVRYC------ 369 +A E + + ++ I L + + V Q LV N +++ Sbjct: 218 LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQ 277 Query: 370 DNKVRITGGIHNDGMAFVCVEDDGPGIPEQDRKRVFEAFARLDDSRTRASGGYGLGLSIV 429 K+ + G ++G + VE+ G + ++ S G GL ++ Sbjct: 278 GGKILLKG-TKDNGTVTLEVENTGSLALKNTKE----------------STGTGL-QNVR 319 Query: 430 SRIAYWFGGEIKVDESPSLGGARFIMTWPA 459 R+ +G E ++ S G ++ P Sbjct: 320 ERLQMLYGTEAQIKLSEKQGKVNAMVLIPG 349
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.048 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 26/88 (29%) Query: 555 RFYQVYDPSYYKPEYAIKESWRWLHAIETGLKGKPI----------DWTVLDDVIETIVK 604 RF+ VY P + +P+ A+ +++ A+ L+GK I D+T +DD+ E I++ Sbjct: 177 RFFTVYGP-WGRPDMAL---FKFTKAM---LEGKSIDVYNYGKMKRDFTYIDDIAEAIIR 229 Query: 605 NVPVL---------EAIQDVAPDAGYRV 623 V+ E A A YRV Sbjct: 230 LQDVIPHADTQWTVETGTPAASIAPYRV 257
>PF03309#Bvg accessory factor Length = 271 Score = 87.9 bits (218), Expect = 7e-24 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 24/168 (14%) Query: 7 GLQCGYEVPSQLGIDRWLQ-VLAVAEEKENYCIIGCGTALTID-LTKGKQHLGGYILPNL 64 G+ + P ++G DR + + A + ++ G+++ +D ++ + LGG I P + Sbjct: 97 GIPLLVDNPKEVGADRIVNCLAAYHKYGTAAIVVDFGSSICVDVVSAKGEFLGGAIAPGV 156 Query: 65 YLQRDALIQNTK-----GIKIPDSAFDNLNPGNNTVDAVHHGILLGLISTIESIMQQS-- 117 + DA + + P S G NTV+ + G + G ++ ++ + Sbjct: 157 QVSSDAAAARSAALRRVELTRPRSVI-----GKNTVECMQAGAVFGFAGLVDGLVNRIRD 211 Query: 118 --------PKKLLLTGGDAPLFAKFLQKYQPTVETDLLLKGLQQYIAH 157 ++ TG APL L + + L L GL + + Sbjct: 212 DVDGFSGADVAVVATGHTAPLVLPDL-RTVEHYDRHLTLDGL-RLVFE 257
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 59.3 bits (143), Expect = 5e-11 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 7/272 (2%) Query: 604 EQVLQKQQPELQALDQIIVQQKDELGQLQVDLQQKQQVIKQKQKDLQQLDVQIAKQQTAA 663 + +AL + +EL + L++ + + +K +Q+L+ + A + A Sbjct: 70 KLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKAL 129 Query: 664 QAFLLQKQQLKDQLAQLDTQLEEDAMQKDDLEIDLHALAMKLETILPDYKTLQFQVEELT 723 + + ++ L+ + A +K DLE L KTL+ + L Sbjct: 130 EGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALE 189 Query: 724 EQLEEQQQVLQQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQITAQMEQAKKFVD 783 + E ++ L+ LE + + L ++ + +E A F Sbjct: 190 ARQAELEKALEGAMNFSTADSAKIKT-------LEAEKAALAARKADLEKALEGAMNFST 242 Query: 784 PIQLELPNLESEFQQQFAQTEKLQKTWNEWQIELNSVQEKQQTLTDQRHQYQQQDEKLRE 843 ++ LE+E A+ +L+K + K +TL ++ + + L Sbjct: 243 ADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEH 302 Query: 844 QLEAKRLAWQAAKSDREHYQEQLKELNAELQT 875 Q + Q+ + D + +E K+L AE Q Sbjct: 303 QSQVLNANRQSLRRDLDASREAKKQLEAEHQK 334 Score = 54.7 bits (131), Expect = 2e-09 Identities = 55/344 (15%), Positives = 126/344 (36%), Gaps = 5/344 (1%) Query: 108 AKPEEMRIFIEEAAGVSRYQARRRETLQHLEHTEQNLSRLEDIALELKSQLKTLKRQSEA 167 ++ + + E A + L + L D E S K R+++ Sbjct: 47 SQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDK 106 Query: 168 AVQYKTLESQIRTLKIEILSFQAEKSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLES 227 ++ K + Q + L E ++ + ++ L + + + +E LE Sbjct: 107 SLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEG 166 Query: 228 TSALFQRLIQQSSPLQQEWQQAEKKLSELKMTLEQKQSLFQQNSTTLVQLEQQKAQTKER 287 + L+ E E + +EL+ LE + +S + LE +KA R Sbjct: 167 AMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAAR 226 Query: 288 LQLSELQLETLNSQLEEQTEALTAIEHTAAEAEQSFAGLQSQQRQAQQQFEQVKAQVEKQ 347 E LE + + + +E A E A L+ A A+++ Sbjct: 227 KADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTL 286 Query: 348 QQQKMQMSAQIEQLGKNVQRIEQQKETLQHQANQIQSQVHEDEQGELEQLQQQLCREIST 407 + +K + A+ L Q + +++L+ + + +LE Q+L + Sbjct: 287 EAEKAALEAEKADLEHQSQVLNANRQSLRRDL-----DASREAKKQLEAEHQKLEEQNKI 341 Query: 408 LEAEIEQYVQRIEQAQQAHQVNKNQQQTLKTEIQVLLSEQKNLS 451 EA + + ++ +++A + + + Q L+ + ++ + +++L Sbjct: 342 SEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLR 385 Score = 44.7 bits (105), Expect = 2e-06 Identities = 35/255 (13%), Positives = 86/255 (33%), Gaps = 6/255 (2%) Query: 695 EIDLHALAMKLETILPDYKTLQFQVEELTEQLEEQQQVLQQQQQEREILRRNSTQTTQQI 754 L + + + + TL+ + +L+ + + + +E + + + + Sbjct: 49 TDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEKLRKNDKSL 108 Query: 755 ELLEKDISFLQSQYQQITAQMEQAKKFVDPIQLELPNLESEFQQQFAQTEKLQKTWNEWQ 814 I L+++ + +E A F ++ LE+E A+ L+K Sbjct: 109 SEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAM 168 Query: 815 IELNSVQEKQQTLTDQRHQYQQQDEKLREQLEAKRLAWQAAKSDREHYQEQLKELNAELQ 874 + K +TL ++ + + +L + LE A + + + + L A Sbjct: 169 NFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARKA 228 Query: 875 ------TGLKIDLTEHQQKLEKVQKQFEKIGAVNLAASQEFEEVSQRFDELSHQIQDLEN 928 G T K++ ++ + + A + E S +I+ LE Sbjct: 229 DLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEA 288 Query: 929 TVTQLKDAMKSIDQE 943 L+ ++ + Sbjct: 289 EKAALEAEKADLEHQ 303 Score = 40.0 bits (93), Expect = 5e-05 Identities = 48/312 (15%), Positives = 119/312 (38%), Gaps = 11/312 (3%) Query: 597 RIRLDEIEQVLQKQQPELQALDQIIVQQKDELGQLQVDLQQKQQVIKQKQKDLQQLDVQI 656 ++ + E AL+ + + L IK + + L + Sbjct: 168 MNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALAARK 227 Query: 657 AKQQTAAQAFLLQKQQLKDQLAQLDTQLEEDAMQKDDLEIDLHALAMKLETILPDYKTLQ 716 A + A + + ++ L+ + ++ +LE L Sbjct: 228 ADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNF-------STADS 280 Query: 717 FQVEELTEQLEEQQQVLQQQQQEREILRRNSTQTTQQIELLEKDISFLQSQYQQITAQME 776 +++ L + + + + ++L N + ++ + L++++Q++ Q + Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 777 QAKKFVDPIQLELPNLESEFQQQFAQTEKLQKTWNEWQIELNSVQEKQQTLTDQRHQYQQ 836 ++ ++ +L +Q A+ +KL++ + +I S Q ++ L R ++ Sbjct: 341 ISEASRQSLRRDLDASREAKKQLEAEHQKLEE---QNKISEASRQSLRRDLDASREA-KK 396 Query: 837 QDEKLREQLEAKRLAWQAAKSDREHYQEQLKELNAELQTGLKIDLTEHQQKLEKVQKQFE 896 Q EK E+ +K A + + E ++ ++ AELQ L+ + ++KL K ++ Sbjct: 397 QVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELA 456 Query: 897 KIGAVNLAASQE 908 K+ A + SQ Sbjct: 457 KLRAGKASDSQT 468
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 3e-04 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 13/167 (7%) Query: 25 QPVIPRHVRDQLEQPEVTVASAAVAARVEPTLSEPAQSEEKGTKELEQASQAQTVQTQVP 84 P + V + EQ E A A +PT++ +E ++ A Q P Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVN----IKEPQSQTNTTADTEQ------P 1171 Query: 85 VEKTPVEVEEVKAEENTVSPTVSENSSVELVDTVSAEPEVVSSSEPKVAEGQPKTEPELS 144 ++T VE+ E TV+ S + E + +P V S S K ++ + Sbjct: 1172 AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVP 1231 Query: 145 LNPNIETAEIAEFEGESNILDVHLHEQQRFDDESALAMAEQIIALNV 191 N T + + + D A A Q +ALNV Sbjct: 1232 HNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKA---QFVALNV 1275 Score = 32.7 bits (74), Expect = 0.002 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 15/130 (11%) Query: 33 RDQLEQPEVTVASAAVAARVEPTLSEPAQSEEKGTKELEQASQAQTVQTQVPVEKTPVEV 92 R L PEV + V T + E+ ++ P TP E Sbjct: 977 RYDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSET 1036 Query: 93 EEVKAEE-NTVSPTVSENSSVELVDTVSAEPEVVSSSEPKVAEGQPKTEPELSLNPNIET 151 E AE S TV +N ++E + E + ++ N +T Sbjct: 1037 TETVAENSKQESKTVEKNEQ--------------DATETTAQNREVAKEAKSNVKANTQT 1082 Query: 152 AEIAEFEGES 161 E+A+ E+ Sbjct: 1083 NEVAQSGSET 1092
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 36.0 bits (83), Expect = 2e-05 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 14/97 (14%) Query: 46 HEMQEE-----ASHADAIIRRVLFLGAKPNMHREDINVGTDV---------VSCLKADLA 91 HE EE A D I R+L +G +P ++ + ++A + Sbjct: 47 HEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITDGGNETSASEMVQALVN 106 Query: 92 LEYHVREKLATGIKLCEEKGDYISRDMLRQQLSDTEE 128 + + I L EE D + D+ + + E+ Sbjct: 107 DYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEK 143
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.006 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 42 YAQQRLNLNHANFGLLLLCMGI-GSMIAMPATGALVKRWGCRPLIAVATILLMVLLPSLT 100 + + R + + G+ L GI S+ TG + R G R + + I L Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA 295 Query: 101 IWHSLVSMAVALFIFGTAAGSLGVAINLQAVVVEKHSLRALMSSFHGMCSLGGLIGAMLV 160 + + + + + + V++ L S + SL ++G +L Sbjct: 296 FATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLF 355 Query: 161 TALLA 165 TA+ A Sbjct: 356 TAIYA 360
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.6 bits (64), Expect = 0.012 Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 13/157 (8%) Query: 18 IYLTSKYQLNPAFAGLAYTFFAL--SMTSGRFAGHILLKQWGEKTIVTYSAIVAALAMVT 75 I+ ++ + G++ F + S+ G + + GE+ + I + Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMITG-PVAARLGERRALMLGMIADGTGYIL 293 Query: 76 IVMAPVWQVVVLGYALLGLG--CSNIVPVMFSRVGRQNDMPKAAALSLVSTIAYTGSLSG 133 + A + LL G + M SR + + + + S+ G Sbjct: 294 LAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSL--AALTSLTSIVG 351 Query: 134 PALIGLI-----GQWTSLTTVLSGVAVLLTMIAILNR 165 P L I W + G A+ L + L R Sbjct: 352 PLLFTAIYAASITTWNGWAWIA-GAALYLLCLPALRR 387
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 531 bits (1369), Expect = 0.0 Identities = 151/645 (23%), Positives = 259/645 (40%), Gaps = 78/645 (12%) Query: 1 MDWMEQEQERGITITSAATTCFWSGMGNQFPQHRINVIDTPGHVDFTIEVERSMRVLDGA 60 D E++RGITI + T+ W ++N+IDTPGH+DF EV RS+ VLDGA Sbjct: 43 TDNTLLERQRGITIQTGITSFQWEN-------TKVNIIDTPGHMDFLAEVYRSLSVLDGA 95 Query: 61 CMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFRVVEQMKTRLGANPVPI 120 ++ A GVQ Q+ ++ K +P + F+NK+D+ G + V + +K +L A V Sbjct: 96 ILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK 155 Query: 121 VVPIGAEDTFTGVVDLIEMKAIIWDEASQGMKFEYGEIPADLVDTAQEWRTNMVEAAAEA 180 V M + E+ Q + E Sbjct: 156 ----------QKVELYPNMCVTNFTESEQ------------------------WDTVIEG 181 Query: 181 SEELMDKYLEEGDLSKEDIIAGLRARTLASEIQVMLCGSAFKNKGVQRMLDAVIEFLPSP 240 +++L++KY+ L ++ R + + GSA N G+ +++ + S Sbjct: 182 NDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYSS 241 Query: 241 TEVKAIEGILDDKDETKASREASDEAPFSALAFKIMNDKFVGNLTFVRVYSGVLKQGDAV 300 T ++ FKI + L ++R+YSGVL D+V Sbjct: 242 TH--------------------RGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSV 281 Query: 301 YNPVKSKRERIGRIVQMHANERQDIDEIRAGDIAACVG----LKDVTTGDTLCDEKNIIT 356 K K +I + E ID+ +G+I L V GDT + Sbjct: 282 RISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQR--- 336 Query: 357 LERMEFPDPVIQLAVEPKTKADQEKMSIALGRLAKEDPSFRVHTDEESGQTIIAGMGELH 416 ER+E P P++Q VEP +E + AL ++ DP R + D + + I++ +G++ Sbjct: 337 -ERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQ 395 Query: 417 LDIIVDRMKREFGVEANIGKPMVAYRETIKKTVEQEGKFVRQTGGKGKFGHVYVRLEPLD 476 +++ ++ ++ VE I +P V Y E K E + + + + + PL Sbjct: 396 MEVTCALLQEKYHVEIEIKEPTVIYMERPLKKA--EYTIHIEVPPNPFWASIGLSVSPLP 453 Query: 477 VEAAGKEYEFAEEVVGGVVPKEFFGAVDKGIQERMKNGVLAGYPVVGVKAVLFDGSYHDV 536 + G ++ V G + + F AV +GI+ + G L G+ V K G Y+ Sbjct: 454 L---GSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSP 509 Query: 537 DSDELSFKMAGSYAFRDGFMKADPVLLEPIMKVEVETPEDYMGDIMGDLNRRRGMVQGMD 596 S F+M KA LLEP + ++ P++Y+ D + + Sbjct: 510 VSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDT- 568 Query: 597 DLPGGTKAIKAEVPLAEMFGYATQMRSMSQGRATYSMEFAKYAET 641 L + E+P + Y + + + GR+ E Y T Sbjct: 569 QLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVT 613
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 44.0 bits (104), Expect = 3e-07 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Query: 195 INADLVAGKVAEALGAEKLILLTNISGVL----DENKNLLTGLTTQEVDRLIETG-VIYG 249 I+ DL K+AE + A+ ++LT+++G E + L + +E+ + E G G Sbjct: 213 IDKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAG 272 Query: 250 GMIPKVGCALDAVKGG 265 M PKV A+ ++ G Sbjct: 273 SMGPKVLAAIRFIEWG 288 Score = 36.7 bits (85), Expect = 7e-05 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%) Query: 27 GKTLVVKYGGNAMTDPELESSF----------ARDIVLLKTVGLNPIVVHGGGPQVDSFL 76 GK +V+ GGNA+ + S+ AR I + G ++ HG GPQV S L Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 77 KQ 78 Sbjct: 62 LH 63
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 32.4 bits (74), Expect = 7e-04 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 6/101 (5%) Query: 80 QVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMV-IPAPDNTAAFADAKKLFDAVK 138 + ++ ++ G P+ V + Q+ + + LM ++ + A + Sbjct: 121 YLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQA- 179 Query: 139 VQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 179 + S+ S+ A VR G L+GA Sbjct: 180 AEGLECR----RSLSNSAATLWHPEAHFDWVRPGIILYGAS 216
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 38.0 bits (88), Expect = 2e-04 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 20/226 (8%) Query: 288 LVQIFETGQKQYQLAEQQLKQTLDFEQQHQHALNQVRQSIQERA-----FIADEYKKCKE 342 QI T Q Q A +L Q + AL + + + I +YK Sbjct: 6 TAQIKSTLQSAKQSAANKLHSAG---QSTKDALKKAAEQTRNAGNRLILLIPKDYKGQG- 61 Query: 343 KRQVIEQNLSPLQQQQNAVQQQVAQLEQNKIHLQQQLLQTQQYAV--LDKGLSAHLHQLG 400 +L+ L + + + +V E+N + +Q+ T + + ++G++ QL Sbjct: 62 ------SSLNDLVRTADELGIEVQYDEKNGTAITKQVFGTAEKLIGLTERGVTIFAPQLD 115 Query: 401 QFIQNYQAIEEQLGNPTL-AHQKLSEAKSELEQLTASLGTVEQIELKLEQQRKDKEQKLA 459 + +Q YQ LG L +A L LGT +K+++ K K++ Sbjct: 116 KLLQKYQKAGNILGGGAENIGDNLGKAGGILSTFQNFLGTALS-SMKIDELIK-KQKSGG 173 Query: 460 QVTQLDLIQQKIKIYHELYAELQHFSEKYTQASTQEEQLKTVCQLA 505 V+ +L + I++ ++L + + S Q L +V Sbjct: 174 NVSSSELAKASIELINQLVDTVASLNNNVNSFSQQLNTLGSVLSNT 219
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 114 bits (286), Expect = 3e-30 Identities = 70/411 (17%), Positives = 156/411 (37%), Gaps = 70/411 (17%) Query: 4 KRKKFLGFFALILLIAAILYAIWALFLNHSVSTDNAYVGAETAQITSMVSGQVAQVLVKD 63 +R + + +F + L+ A + ++ + + + +I + + V +++VK+ Sbjct: 55 RRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKE 114 Query: 64 TQTVHRGDVLVRIDDR--DAKIALAQAEAELAKAKRQYKQTAANSSSLNS---------- 111 ++V +GDVL+++ +A Q+ A+ ++ Q + S LN Sbjct: 115 GESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEP 174 Query: 112 -------QVVVRADE-----INSAKAQVAQAQADYDKAALE------------------- 140 + V+R ++ + Q Q + + DK E Sbjct: 175 YFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEK 234 Query: 141 --LNRRAQLAASGAVSKEELTKAQSAVETAKAGLELAKAGLAQATSSRKAAESTLAANEA 198 L+ + L A++K + + ++ A L + K+ L Q S +A+ Sbjct: 235 SRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQ 294 Query: 199 LIQGVSETST------PDVQVAQAHVEQAQLDLERTVIRAPVDGVITRRNIQ-VGQRVAP 251 L + +E ++ + + + + + +VIRAPV + + + G V Sbjct: 295 LFK--NEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT 352 Query: 252 GTSMMMIVPLND-LYVDANFKESQLKKVRPGQPVTLTSDLYGDDVEYHGKVVGFSGGTGS 310 ++M+IVP +D L V A + + + GQ + + + +G +VG Sbjct: 353 AETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAF--PYTRYGYLVG------- 403 Query: 311 AFALIPAQNATGNWIKVVQRLPVRIALDPKELAEH----PLRVGLSMEAKV 357 I + +V V I+++ L+ PL G+++ A++ Sbjct: 404 KVKNINLDAIEDQRLGLVFN--VIISIEENCLSTGNKNIPLSSGMAVTAEI 452
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 105 bits (264), Expect = 9e-27 Identities = 86/394 (21%), Positives = 161/394 (40%), Gaps = 20/394 (5%) Query: 3 VLDTTIANVSVPHITGNLAVSSTQGTWVVTSYAVAEAICVPLTGWLAGRFGTVRVFIFGL 62 VL+ + NVS+P I + WV T++ + +I + G L+ + G R+ +FG+ Sbjct: 27 VLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGI 86 Query: 63 IGFTVFSFLCGLATS-LEMLVFFRIGQGLCGGPLMPLSQTLLMRIFPQEKHAQAMGLWAM 121 I S + + S +L+ R QG L ++ R P+E +A GL Sbjct: 87 IINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGS 146 Query: 122 TTVVGPILGPILGGLISDNLSWHWIFFINLP-VGIVCVLAAMRLLRVAETETISLRIDTV 180 +G +GP +GG+I+ + HW + + +P + I+ V M+LL+ I Sbjct: 147 IVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDI--- 201 Query: 181 GLGLLILWIGALQLMLDLGHERDWFNSTSIVILALTAAIGFVVFLIWELTDKHPVVDVKV 240 G++++ +G + ML F S+ + F++F+ P VD + Sbjct: 202 -KGIILMSVGIVFFMLFTTSYSISFLIVSV--------LSFLIFVKHIRKVTDPFVDPGL 252 Query: 241 FRHRGFAISVLALSLGFGAFFGSIVLIPQWLQM--NLSYTATWAGYLTATMGFGSLTMSP 298 ++ F I VL + FG G + ++P ++ LS + + + Sbjct: 253 GKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF-GY 311 Query: 299 IVAKLSTKHDPRALASFGLILLGIVTLMRAFWTTDADFMALAWPQILQGFAVPFFFIPLS 358 I L + P + + G+ L + L +F + + + + F +S Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASF-LLETTSWFMTIIIVFVLGGLSFTKTVIS 370 Query: 359 NIALGSVLQQEIASAAGLMNFLRTMAGAIGASIA 392 I S+ QQE + L+NF ++ G +I Sbjct: 371 TIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIV 404
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 50.3 bits (120), Expect = 8e-09 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 1/174 (0%) Query: 7 IATFFDAYTVLAIAFALPQLITEWHLTPAYVGAIIAAGYVGQLVGAIFFGSLAEKVGRLK 66 I +FF + + +LP + +++ PA + A + +G +G L++++G + Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 67 VLSFTILLFVAMDISCLFAWSGMSLLIF-RFLQGVGTGGEVPVASAYINEFIGAEKRGKF 125 +L F I++ + S SLLI RF+QG G + + +I E RGK Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 126 FLLYEVLFPLGLMFAGMAAFFLMPIYGWKVMFIVGLIPSLLVIPLRFFLPESPR 179 F L + +G + W + ++ +I + V L L + R Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 83.6 bits (206), Expect = 1e-21 Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 13/222 (5%) Query: 2 ADILSDLVQQEAQALQQQGLKAHAVTVDLANADSIENTVAKSVEVLKGLDGLVNCAALAT 61 D + +++ +L+ + A A D+ ++ +I+ A+ + +D LVN A + Sbjct: 38 VDYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLR 97 Query: 62 NVGGKNMIDYDPELWDRVMNINVKGTWLISKACVPHLKQSAAGKIINVASDTALWGAPNL 121 ++ D E W+ ++N G + S++ ++ +G I+ V S+ A ++ Sbjct: 98 PGLIHSLSD---EEWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSM 154 Query: 122 MAYVASKGAIVAMTRSMARELGQFNICVNTLSPGL--TLVEATEYVPQERHDLYVNGRAI 179 AY +SK A V T+ + EL ++NI N +SPG T ++ + + + + + G Sbjct: 155 AAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLE 214 Query: 180 Q--------RQQLPQDLNGTALYLLSDLSSFVTGQNIPVNGG 213 + P D+ L+L+S + +T N+ V+GG Sbjct: 215 TFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGG 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 2e-07 Identities = 71/352 (20%), Positives = 124/352 (35%), Gaps = 25/352 (7%) Query: 8 AKLGWLMTSFLLAYGFSSVFLSFLGDIFNPKKMLFWSVTSWGLLMLCMGFTTSYSGMLIL 67 A G L+ + L + L L D F + +L S+ + M + I Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIG 102 Query: 68 RVLLGLAEGPLFALAYTIVKQTYTDRQQARASTMFLLGTPIGA-FLGFPITAAVLAHHDW 126 R++ G+ I T RA + G + P+ ++ Sbjct: 103 RIVAGITGATGAVAGAYIADIT---DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP 159 Query: 127 HTTFFVMAALTLIAILSIVFGLRNLQL--KKTVELEGESKRTNFKGHIANTKVLVSNSAF 184 H FF AAL + L+ F L ++ + E + +F+ T V + F Sbjct: 160 HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVF 219 Query: 185 WLVCLFNIALMTYLWGLNS-----WVPSYLMQDKGFNLKEFGVYSSFPFIAMLIGEVVGA 239 +++ L LW + W + G +L FG+ S AM+ G Sbjct: 220 FIMQLVGQVPAA-LWVIFGEDRFHWDAT----TIGISLAAFGILHSL-AQAMITG----- 268 Query: 240 FLSDKLGRRAIQVFSGLLLAGIFMYVMVIMTEPLLIIAAMSLSAMAWGFGVAAVFALLAR 299 ++ +LG R + G++ G ++ T + M L A + G G+ A+ A+L+R Sbjct: 269 PVAARLGERRA-LMLGMIADGTGYILLAFATRGWMAFPIMVLLA-SGGIGMPALQAMLSR 326 Query: 300 VTTSNVGATAGGIFNGLGNFASAIAPVLIGYIVMQHIVLIWELPSWLQSLSL 351 G L + S + P+L I I W +W+ +L Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT-TWNGWAWIAGAAL 377
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 115 bits (288), Expect = 3e-27 Identities = 83/272 (30%), Positives = 131/272 (48%), Gaps = 14/272 (5%) Query: 327 SKHDYIFGSEDNNIDIQGGDGNDHIYGGGGDDEIYGGEGDDYLEGGHGSDELHGGNDNDK 386 ++ D FGS+ +I G DG+D I G G+D +YG +G+D L GG+G D+L+GG+ NDK Sbjct: 726 TRADKFFGSKFTDI-FHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDK 784 Query: 387 LVGMDGDNYLYGDDGNDLLL---GGADKDELYGGSGNDYLNGGSGADLLDGGTGNDILVG 443 L+G+ G+NYL G DG+D K+ L+GG GND L G GADLLDGG G+D+L G Sbjct: 785 LIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKG 844 Query: 444 --GPNWLIAEGGEGNDIIFADPNK-----VSNLERVDELSGGAGNDIFYGSIGPSNIKGA 496 G + G G+ II D K +++++ D GND+ + + Sbjct: 845 GYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIG 904 Query: 497 EGNDIIYSANGQDIITGGDGNDI--IYGYSGEDTTESTIRNNLSGGTGNDLIYGSVNSDF 554 N I + + ++I I+ SG T +++ L N+ +D Sbjct: 905 HKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRNNKASYVYGNDA 964 Query: 555 IEGGVGTNILEGKESVDNYIITENEGLGLGTQ 586 + G ++ + II+ + + Sbjct: 965 LAYGSQGDLNPLINEISK-IISAAGSFDVKEE 995 Score = 111 bits (280), Expect = 2e-26 Identities = 80/336 (23%), Positives = 131/336 (38%), Gaps = 58/336 (17%) Query: 901 GDDYLYGGTGKDVVYGGAGRD--YISGGDDDDKLIGGYEADVIYGGEGNDNITGDLLNLF 958 GDD ++ G +Y G G D Y D I G +A GN +T L Sbjct: 619 GDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATE----AGNYTVTRVLGGDV 674 Query: 959 GTTAPPTSADSTRYGNDLIFGGKGEYQIWSNGGDDIIFGGTDKDYIDGGEGNDYLYGDNE 1018 G K +Y + Y L + Sbjct: 675 KVLQEVVKEQEVSVGKR---TEKTQY----------------RSYEFTHINGKNLTETDN 715 Query: 1019 DQLID--IDGKEKDDVFGGKGDDFLFGGAGNDQLYGGKDNDILYGGANDDLIKGEDGNDI 1076 ++ I D FG K D G G+D + G ND LYG +D + G +G+D Sbjct: 716 LYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQ 775 Query: 1077 IYGGDGNDI--------FLFGGEGND------------ILYGEDANDKIHGDSGDDIIFG 1116 +YGGDGND +L GG+G+D +L+G NDK++G G D++ G Sbjct: 776 LYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDG 835 Query: 1117 GTGNDNLQGGQGSDLYVFSIGDGTDTIVEEVSDIASLNYQNFIYFTFNSDQIRGVIRDGY 1176 G G+D L+GG G+D+Y + G G I ++ L+ + + + R+G Sbjct: 836 GEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLAD-----IDFRDV-AFKREGN 889 Query: 1177 DLIIKYDQ-----YNQDDQVIVKDYYKVRNTNNHSY 1207 DLI+ + + + +++++ + + ++ Sbjct: 890 DLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNH 925 Score = 108 bits (272), Expect = 2e-25 Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 34/244 (13%) Query: 358 DEIYGGEGDDYLEGGHGSDELHGGNDNDKLVGMDGDNYLYGDDGNDLLLGGADKDELYGG 417 +E+ G D G +D HG + +D + G DG++ LYGD GND L GG D+LYGG Sbjct: 720 EELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGG 779 Query: 418 SGNDYLNGGSGADLLDGGTGNDILVGGPNWLIAEGGEGNDIIFADPNKVSNLERVDELSG 477 GND L G +G + L+GG G+D N L + L G Sbjct: 780 DGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAK----------------------NVLFG 817 Query: 478 GAGNDIFYGSIGPSNIKGAEGNDIIYSANGQDIIT--GGDGNDIIYGYSGEDTTESTIRN 535 G GND YGS G + G EG+D++ G DI G G+ II G++ S Sbjct: 818 GKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLS---- 873 Query: 536 NLSGGTGNDLIYGSVNSDFI----EGGVGTNILEGKESVDNYIITENEGLGL-GTQYIID 590 L+ D+ + +D I EG V + + + N+ E+ + + I D Sbjct: 874 -LADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFD 932 Query: 591 QDGR 594 + GR Sbjct: 933 KSGR 936 Score = 92.7 bits (230), Expect = 2e-20 Identities = 73/235 (31%), Positives = 106/235 (45%), Gaps = 48/235 (20%) Query: 878 ILGSGSVDNLYGDENSDHLYGRGGDDYLYGGTGKDVVYGGAGRDYISGGDDDDKLIGGYE 937 ++G+ D +G + +D +G GDD + G G D +YG G D +SGG+ DD+L Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQL----- 776 Query: 938 ADVIYGGEGNDNITGDLLNLFGTTAPPTSADSTRYGNDLIFGGKGEYQIWSNGGDDIIFG 997 YGG+GND + G GN+ + GG G+ + G Sbjct: 777 ----YGGDGNDKLIGV------------------AGNNYLNGGDGDDEFQVQG------N 808 Query: 998 GTDKDYIDGGEGNDYLYGDNEDQLIDIDGKEKDDVFGGKGDDFLFGGAGND-QLYG-GKD 1055 K+ + GG+GND LYG L+D GG+GDD L GG GND Y G Sbjct: 809 SLAKNVLFGGKGNDKLYGSEGADLLD----------GGEGDDLLKGGYGNDIYRYLSGYG 858 Query: 1056 NDILY--GGANDDL-IKGEDGNDIIYGGDGNDIFLFGGEGNDILYGEDANDKIHG 1107 + I+ GG D L + D D+ + +GND+ ++ GEGN + G Sbjct: 859 HHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRN 913 Score = 92.0 bits (228), Expect = 3e-20 Identities = 74/325 (22%), Positives = 117/325 (36%), Gaps = 70/325 (21%) Query: 884 VDNLYGDENSDHLYGRGGDDYLYGGTGKDVVYGGAGRDYISGGDDDDKLIGGYEADVIYG 943 DNLY E L G D +G D+ +G G D I G D +D+L G D + G Sbjct: 713 TDNLYSVE---ELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSG 769 Query: 944 GEGNDNITGDLLNLFGTTAPPTSADSTRYGNDLIFGGKGEYQIWSNGGDDIIFGGTDKDY 1003 G G+D ++GG G+D + G +Y Sbjct: 770 GNGDDQ---------------------------LYGGD---------GNDKLIGVAGNNY 793 Query: 1004 IDGGEGNDYLYGDNEDQLIDIDGKEKDDVFGGKGDDFLFGGAGNDQLYGGKDNDILYGGA 1063 ++GG+G+D + L+GGK ND LYG Sbjct: 794 LNGGDGDDEF-------------------------QVQGNSLAKNVLFGGKGNDKLYGSE 828 Query: 1064 NDDLIKGEDGNDIIYGGDGNDIFLFG-GEGNDILYGEDA-NDKIH-GDSG-DDIIFGGTG 1119 DL+ G +G+D++ GG GNDI+ + G G+ I+ + DK+ D D+ F G Sbjct: 829 GADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREG 888 Query: 1120 NDNLQGGQGSDLYVFSIGDGTDTIVEEVSDIASLNYQNFIYFTFNSDQIRGVIRDGYDLI 1179 ND + ++ +G T + + I F+ R + D Sbjct: 889 NDLIMYKGEGNVLSIGHKNGI-TFRNWFEKESGDISNHEIEQIFDKSG-RIITPDSLKKA 946 Query: 1180 IKYDQYNQDDQVIVKDYYKVRNTNN 1204 ++Y Q N + + + Sbjct: 947 LEYQQRNNKASYVYGNDALAYGSQG 971 Score = 91.2 bits (226), Expect = 5e-20 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 19/201 (9%) Query: 871 GGLGDDFILGSGSVDNLYGDENSDHLYGRGGDDYLYGGTGKDVVYGGAGRDYISGGDDDD 930 G D GS D +G + D + G G+D LYG G D + GG G D + GGD +D Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGND 783 Query: 931 KLIGGYEADVIYGGEGNDNITGDLLNLFGTTAPPTSADSTRYGNDLIFGGKGEYQIWSNG 990 KLIG + + GG+G+D + +++FGGKG +++ + Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNS---------------LAKNVLFGGKGNDKLYGSE 828 Query: 991 GDDIIFGGTDKDYIDGGEGND-YLYGDNE-DQLIDIDGKEKDDVF--GGKGDDFLFGGAG 1046 G D++ GG D + GG GND Y Y +ID DG ++D + D F G Sbjct: 829 GADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREG 888 Query: 1047 NDQLYGGKDNDILYGGANDDL 1067 ND + + ++L G + + Sbjct: 889 NDLIMYKGEGNVLSIGHKNGI 909 Score = 85.4 bits (211), Expect = 3e-18 Identities = 89/335 (26%), Positives = 129/335 (38%), Gaps = 45/335 (13%) Query: 729 KGGDNQDIILGGVGKDKIYGGDGEDLLISSGKDTIVASSFATYLLEKYNNQVNPNATLAD 788 GD D + G IY G G D++ DT + T E N V L Sbjct: 615 HLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRV--LGG 672 Query: 789 LTNLITNDASSHWDINFNFTKQWSEETQSYTYFFTENGVITPFLLPGINIFSDIASNTLN 848 ++ T E+TQ +Y FT + ++ T Sbjct: 673 DVKVLQEVVKEQEVSVGKRT----EKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRA 728 Query: 849 LTSIYSLLETDDGGALGADTVYGGLGDDFILGSGSVDNLYGDENSDHLYGRGGDDYLYGG 908 G+ D +G GDD I G+ D LYGD+ +D L G GDD LYGG Sbjct: 729 ---------DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGG 779 Query: 909 TGKDVVYGGAGRDYISGGDDDDKLI---GGYEADVIYGGEGNDNITGDLLNLFGTTAPPT 965 G D + G AG +Y++GGD DD+ +V++GG+GND + G Sbjct: 780 DGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGS------------ 827 Query: 966 SADSTRYGNDLIFGGKGEYQIWSNGGDDIIFGGTDKDYIDGGEGNDYLY--GDNEDQLID 1023 G DL+ GG+G+ + G+DI + G G+ + G ED+L Sbjct: 828 ------EGADLLDGGEGDDLLKGGYGNDIYRYLS-------GYGHHIIDDDGGKEDKLSL 874 Query: 1024 IDGKEKDDVFGGKGDDFLFGGAGNDQLYGGKDNDI 1058 D +D F +G+D + + L G N I Sbjct: 875 ADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGI 909 Score = 83.5 bits (206), Expect = 1e-17 Identities = 99/429 (23%), Positives = 148/429 (34%), Gaps = 103/429 (24%) Query: 340 IDIQGGDGND---------HIYGGGGDDEIYGGEGDDYLEGGHGSDELHGGN-------- 382 I+ GDG+D +IY G G D +Y + D G+ GN Sbjct: 612 IESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLG 671 Query: 383 -----------DNDKLVGMDGDNYLYGDDGNDL-----------------LLGGADKDEL 414 + + VG + Y L+G D+ Sbjct: 672 GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKF 731 Query: 415 YGGSGNDYLNGGSGADLLDGGTGNDILVGGPNWLIAEGGEGNDIIFADPNKVSNLERVDE 474 +G D +G G DL++G GND L G +GND + Sbjct: 732 FGSKFTDIFHGADGDDLIEGNDGNDRLY---------GDKGNDTL--------------- 767 Query: 475 LSGGAGNDIFYGSIGPSNIKGAEGNDIIYSANGQDIITGGDGNDIIYGYSGEDTTESTIR 534 SGG G+D Y G +GND + G + + GGDG+D S + Sbjct: 768 -SGGNGDDQLY---------GGDGNDKLIGVAGNNYLNGGDGDDEFQVQGN-----SLAK 812 Query: 535 NNLSGGTGNDLIYGSVNSDFIEGGVGTNILEGKESVDNYIITENEGLGLGTQYIIDQDGR 594 N L GG GND +YGS +D ++GG G ++L+G D Y G +IID DG Sbjct: 813 NVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYG-----HHIIDDDGG 867 Query: 595 IQ-------INLATLAVGTYDENIRAWYSSNNLYIIRKLGEGTDKEIISIHKIGDEKNTI 647 + I+ +A ++ + N+ I T + + GD N Sbjct: 868 KEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFE-KESGDISNHE 926 Query: 648 YIEGWGKNGDFGLVFSEITPTNLPSFDNLSTLNNGNNIAYNQTSVNGASGNDYLSGTTGN 707 + + K+G ITP +L NN + Y ++ S D Sbjct: 927 IEQIFDKSGR------IITPDSLKKALEYQQRNNKASYVYGNDALAYGSQGDLNPLINEI 980 Query: 708 DIIDGANGN 716 I A G+ Sbjct: 981 SKIISAAGS 989 Score = 83.5 bits (206), Expect = 1e-17 Identities = 60/202 (29%), Positives = 84/202 (41%), Gaps = 34/202 (16%) Query: 2878 GTSSIDTLYGASGNDTITGLAGNDVLYGQSGNDTLNGGTGNDTMYGGKGDDIFVIDSSTD 2937 G+ D +GA G+D I G GND LYG GNDTL+GG G+D +YGG G+D + + + Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNN 792 Query: 2938 IVNENVNEGIDTVQSSITYSLGNNVENLTLTGTTAINGTGNALNNTLLGNSAINTLTDGA 2997 +N +G D Q + N L G + L Sbjct: 793 YLNG--GDGDDEFQV----------------------QGNSLAKNVLFGGKGNDKLYGSE 828 Query: 2998 GDDYLDGGAGNDKLLGGLGNDVYVVDSTT--DTITENTNEGIDTVRSS------VTYT-L 3048 G D LDGG G+D L GG GND+Y S I ++ + D + + V + Sbjct: 829 GADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKE-DKLSLADIDFRDVAFKRE 887 Query: 3049 GNNLENLTLTGTTAINATGNAL 3070 GN+L G N + Sbjct: 888 GNDLIMYKGEGNVLSIGHKNGI 909 Score = 70.4 bits (172), Expect = 1e-13 Identities = 67/261 (25%), Positives = 104/261 (39%), Gaps = 35/261 (13%) Query: 1502 AIGGIGDDTLISNAANNLLQGGAGKDTYIFNGNFGHDQIIDVDHNNKII------ILNNG 1555 + G GDD + +A + + G G D ++ ID + +L Sbjct: 614 SHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGD 673 Query: 1556 FDNLNLVLAEDTILLLNSNSSIQLDINQFESIIINGITYLKNDFIANFGGYISVNH-DYF 1614 L V+ E + + Q +E ING + D + + I D F Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQY--RSYEFTHINGKNLTETDNLYSVEELIGTTRADKF 731 Query: 1615 LESNQNNVVILGTGDFHIVGNDLDNKIIGNSGNNTISAGDGNDTLQGGFGNDEINGGTGD 1674 S ++ FH G D D+ I GN GN+ + GNDTL GG G+D++ GG G+ Sbjct: 732 FGSKFTDI-------FH--GADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGN 782 Query: 1675 DTLIGGLGNDVLYGGLGNDQYIFKDN----------DGDDVIVDSDGLNKI-------YL 1717 D LIG GN+ L GG G+D++ + N G+D + S+G + + L Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLL 842 Query: 1718 NHSLSNQISLHVISDGDLTIT 1738 N I ++ G I Sbjct: 843 KGGYGNDIYRYLSGYGHHIID 863 Score = 70.4 bits (172), Expect = 1e-13 Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 35/202 (17%) Query: 2221 QYNYTDSNDSISDLIHSSNISGYYNNHYIYAKDGNDTIEIMEVTSTVYGGNGNDSITLKS 2280 TD+ S+ +LI ++ ++ + + G D + + G +GND + Sbjct: 709 NLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDD------LIEGNDGNDRL---- 758 Query: 2281 GDAYGGEGNDAIAINNGIAYGENGDDLIIIQAGDAYGGDGNDSITILTDASY--GGDGND 2338 YG +GND ++ G NGDD + YGGDGND + + +Y GGDG+D Sbjct: 759 ---YGDKGNDTLS-------GGNGDDQL-------YGGDGNDKLIGVAGNNYLNGGDGDD 801 Query: 2339 VL------MGSGQFYGGKGDDTLIANNDSAYMNGGEGADILQGGSGNDTYIVDELDILQL 2392 + +GGKG+D L + + ++GGEG D+L+GG GND Y + Sbjct: 802 EFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHI 861 Query: 2393 ENETGGYDTIVYQYDVGNIDLA 2414 ++ GG + + D+ D+A Sbjct: 862 IDDDGGKEDKLSLADIDFRDVA 883 Score = 65.8 bits (160), Expect = 3e-12 Identities = 63/326 (19%), Positives = 110/326 (33%), Gaps = 79/326 (24%) Query: 2862 SDIFKLTFVVQNLTVNGTSSIDTLYGASGNDTITGLAGNDVLYGQSGNDTLNGGTGNDTM 2921 ++ + ++Q+ +V + + D G+D ++ +G+ + G G+D + Sbjct: 588 GAVYDYSNLIQHASVGNNQYREIRIESHLGD------GDDKVFLSAGSANIYAGKGHDVV 641 Query: 2922 YGGKGDDIFVIDSSTD-------IVNENVNEGIDTVQSSI---TYSLGNNVENL------ 2965 Y K D ++ T V + + +Q + S+G E Sbjct: 642 YYDKTDTGYLTIDGTKATEAGNYTVTRVLGGDVKVLQEVVKEQEVSVGKRTEKTQYRSYE 701 Query: 2966 -------------TLTGTTAINGT----------------GNALNNTLLGNSAINTLTDG 2996 L + GT G ++ + GN + L Sbjct: 702 FTHINGKNLTETDNLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGD 761 Query: 2997 AGDDYLDGGAGNDKLLGGLGNDVYVVDSTTDTITENTNEGIDTVRSSVTYTLGNNLENLT 3056 G+D L GG G+D+L GG GND + + + + N +G D + Sbjct: 762 KGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYL--NGGDGDDEFQV-------------- 805 Query: 3057 LTGTTAINATGNALNNTLIGNNEVNILNGGAGNDILDGQGGNDQFTGGTGSDTLIYQLL- 3115 + N L G + L G G D+LDG G+D GG G+D Y Sbjct: 806 --------QGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGY 857 Query: 3116 ---IASEATGGNGTDSWSDFTVGNVS 3138 I + G S +D +V+ Sbjct: 858 GHHIIDDDGGKEDKLSLADIDFRDVA 883 Score = 60.8 bits (147), Expect = 1e-10 Identities = 28/67 (41%), Positives = 41/67 (61%) Query: 693 NGASGNDYLSGTTGNDIIDGANGNNFINGLDGDDTLKGGDNQDIILGGVGKDKIYGGDGE 752 +GA G+D + G GND + G GN+ ++G +GDD L GGD D ++G G + + GGDG+ Sbjct: 741 HGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGD 800 Query: 753 DLLISSG 759 D G Sbjct: 801 DEFQVQG 807 Score = 60.0 bits (145), Expect = 1e-10 Identities = 30/90 (33%), Positives = 43/90 (47%) Query: 694 GASGNDYLSGTTGNDIIDGANGNNFINGLDGDDTLKGGDNQDIILGGVGKDKIYGGDGED 753 G + D G+ DI GA+G++ I G DG+D L G D + GG G D++YGGDG D Sbjct: 724 GTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGND 783 Query: 754 LLISSGKDTIVASSFATYLLEKYNNQVNPN 783 LI + + + N + N Sbjct: 784 KLIGVAGNNYLNGGDGDDEFQVQGNSLAKN 813 Score = 59.6 bits (144), Expect = 2e-10 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 12/125 (9%) Query: 1986 TIWNYKKIIDNISKVEIFGTENNDEIHSEDILNTIYAKGGNDNIITGNKGSVTYGGDGDD 2045 +++ +++I + FG++ D H D + I GND + GG+GDD Sbjct: 715 NLYSVEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDD 774 Query: 2046 NISGGTGKNIIFGDSGNDNIYNYGEGSLFGGDGDDRLSGGDRSY----LDGGNGYDIYNI 2101 + GG G + + G +GN+ L GGDGDD S L GG G D Sbjct: 775 QLYGGDGNDKLIGVAGNN--------YLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYG 826 Query: 2102 SEDSN 2106 SE ++ Sbjct: 827 SEGAD 831 Score = 56.5 bits (136), Expect = 2e-09 Identities = 65/352 (18%), Positives = 133/352 (37%), Gaps = 46/352 (13%) Query: 2348 GGKGDDTLIANNDSAYMNGGEGADILQGGSGNDTYIVDELDILQLENETGGY-------- 2399 G GDD + + SA + G+G D++ + Y+ + E G Y Sbjct: 616 LGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTID---GTKATEAGNYTVTRVLGG 672 Query: 2400 DTIVYQYDVGNIDLA-NSQFEAIELFGFSDSYLLGN--TANNSL------IGNSGNNYLD 2450 D V Q V +++ + E + + +++ G T ++L IG + + Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFF 732 Query: 2451 GRTGSDYMAGGAGDDYYVVDVTDTIITDEDGNTRIIDGDQVAEDFDAGTDTIELWQDARF 2510 G +D G GDD + + + + GN + G + G + + Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGND-TLSGGNGDDQLYGGDG------NDKL 785 Query: 2511 IGQDENGNPVLT-----NNYRLLEDNIENLVLKGSA--KTAFGNGLDNIITSNAQDNYID 2563 IG GN L + +++ +++ VL G +G+ +++ D+ + Sbjct: 786 IG--VAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLK 843 Query: 2564 GLGGDDTYIYTKGGGTDTYSFYDDLSATNTLQIQGYNSSDVFAQKYGNSVYLSFK----- 2618 G G+D Y Y G G DD + L + + DV ++ GN + + Sbjct: 844 GGYGNDIYRYLSGYGHHI--IDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVL 901 Query: 2619 --GTSDHIWLSNYYVADT-ESNTYKMDQIEFDSGTVWSSSDIDTLVNRAANN 2667 G + I N++ ++ + + ++++QI SG + + + + N Sbjct: 902 SIGHKNGITFRNWFEKESGDISNHEIEQIFDKSGRIITPDSLKKALEYQQRN 953 Score = 56.1 bits (135), Expect = 3e-09 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 21/113 (18%) Query: 664 EITPTNLPSFDNLSTLNNGNNIAYNQTSVNGASGNDYLSGTTGNDIIDGANGNNFINGLD 723 E+ T S + + A + G GND L G GND + G NG++ + G D Sbjct: 721 ELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGD 780 Query: 724 GDDTLKGGDN---------------------QDIILGGVGKDKIYGGDGEDLL 755 G+D L G ++++ GG G DK+YG +G DLL Sbjct: 781 GNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLL 833 Score = 52.7 bits (126), Expect = 2e-08 Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 40/341 (11%) Query: 1667 EINGGTGDDTLIGGLGNDVLYGGLGNDQYIFKDNDGDDVIVDSDGLNKIYLNHSLSNQIS 1726 E + G GDD + G+ +Y G G+D + D + +D + N++++ + Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATE-AGNYTVTRVLG 671 Query: 1727 --LHVISDGDLTITYGENSNILIKDYFNYSEQFELVFSNNEVWSKDQIGEKLKSEIFGTS 1784 + V+ + Y +Y + + D + E+ GT+ Sbjct: 672 GDVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTH---INGKNLTETDNL--YSVEELIGTT 726 Query: 1785 GNDVLAGEVYLKNKFIALQGDDKIIGGNKDDLIYADIVDNSDSDLKGNYTIINEDGIISL 1844 D G + + F GDD I G + +D +Y D KGN T+ +G L Sbjct: 727 RADKFFGSKF-TDIFHGADGDDLIEGNDGNDRLYGD---------KGNDTLSGGNGDDQL 776 Query: 1845 MYYEKGNDIIIGGKGNDSLFGGRGNDTY----------IFNRGDGVDKIY-----DFYTY 1889 Y GND +IG GN+ L GG G+D + + G G DK+Y D Sbjct: 777 -YGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDG 835 Query: 1890 LDNSDEMNAKVTELNWGIKLSDGVFEDFARQDGKYNRIKFQDVLKEEVLLILVGNDLEIT 1949 + D + + G GK +++ D+ +V GNDL + Sbjct: 836 GEGDDLLKGGYGNDIYRYLSGYG-HHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMY 894 Query: 1950 YGMNDKIIITN-----FKDTMSTRYGFSESYSIAELEFSDG 1985 G + + I + F++ G ++ I ++ G Sbjct: 895 KGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFDKSG 935 Score = 34.9 bits (80), Expect = 0.006 Identities = 23/74 (31%), Positives = 33/74 (44%) Query: 1487 DEGQTFIGYGTVIENAIGGIGDDTLISNAANNLLQGGAGKDTYIFNGNFGHDQIIDVDHN 1546 D+G + G + GG G+D LI A NN L GG G D + GN ++ Sbjct: 761 DKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKG 820 Query: 1547 NKIIILNNGFDNLN 1560 N + + G D L+ Sbjct: 821 NDKLYGSEGADLLD 834
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 57.3 bits (138), Expect = 1e-12 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 20/194 (10%) Query: 5 ETSSKKLHVIRTAINLFTTYGFHTTGVDLIVKKSGIPKATLYNYFHSKEGLIEMCIAFQK 64 E + H++ A+ LF+ G +T + I K +G+ + +Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 SLLKEEVLAIIYSNRYCTPTDKLKEIVVLHVNL---NSLYHLLLKAFFEIKGTYPQAYRM 121 S + E L + P L+EI++ + LL++ F M Sbjct: 68 SNIGELELEYQ-AKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKC---EFVGEM 123 Query: 122 AI--EYRKWLIRELFDLIFSLETRA-----LKPD------ADMVLNLIDGLIFGFISTNS 168 A+ + ++ L E +D I L D A ++ I GL+ ++ Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 169 LSERDEVLERFFKI 182 + + + I Sbjct: 184 SFDLKKEARDYVAI 197
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 33.6 bits (77), Expect = 0.001 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 15/110 (13%) Query: 83 LDAGRVIVVAGFQG----FDANGNTTTLGRGGSDTSGVAIAAALKADECQIYTDVDGVYT 138 ++ G +++ +G G + D +G +A + AD I TDV+G Sbjct: 183 VERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAAL 242 Query: 139 TDPRVAPKAKKIDRISFEEMLEMA--------SLGSKVLQ-IRSVEFAGK 179 K + + + EE+ + S+G KVL IR +E+ G+ Sbjct: 243 YYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE 290
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 35.9 bits (82), Expect = 3e-04 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%) Query: 248 DELGAIQAVVDQLHAEKTALEQKVGDLEKNQMTPEKLEQAAAERAAVIADAKALVPTVKT 307 + + ++Q ++ L A K ++E + + Q E +A + A A + Sbjct: 195 EAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMPA 254 Query: 308 EGCTCEQIKRDVIAAKAGDALVTALMGNVSVGDAKPEQIDTTFRALCAVKG 358 G V+A AG L+ G S+ A + I R L + Sbjct: 255 NG--------SVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPS 297
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.0 bits (70), Expect = 0.004 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 162 VVAPADGVVVQTGHYFFNGQTVLIDHGQGLISMFCHLSEIKVEKGQHIRQGETL 215 V+ + V G +G++ I + I + EI V++G+ +R+G+ L Sbjct: 76 VLGQVEIVATANGKLTHSGRSKEIKPIENSI-----VKEIIVKEGESVRKGDVL 124
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.2 bits (81), Expect = 0.001 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 31/171 (18%) Query: 547 VVGQDEAVVAVSNAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELTKALANFLFDSDDAM 606 +VG+ A+ + + R +D + + G +G GK + +AL ++ + Sbjct: 139 LVGRSAAMQEIYRVLAR--LMQTD-----LTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 607 IRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGVLTEAVRRKPYSV-------VLFDEVEKA 659 + I+M+ S L G E G T A R + DE+ Sbjct: 192 VAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 660 HPDVFNILLQVLDDG---RLTDSQGRVVDFKNTVIVMTSNLGSQDVRELGE 707 D LL+VL G + D + IV +N +D+++ Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVR---IVAATN---KDLKQSIN 288
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 54.6 bits (131), Expect = 1e-11 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 14/181 (7%) Query: 5 ETSSKKLHIIRTAIRLFTTHGFHTTGVDLIVKESEIPKATLYNYFHSKERLIEICIAFQK 64 E + HI+ A+RLF+ G +T + I K + + + +Y +F K L + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 65 SLLKEEVLAIIYSSRYCTPTDKLKEIVVLHVN---SNSLYHLLLKAFFEIKVAYQQAYRM 121 S + E L + P L+EI++ + + LL++ F + + Sbjct: 68 SNIGELELEYQ-AKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVV 126 Query: 122 A-------IEYRKWLTREILELIFSLETRA-LKPD--ANMVLNLIDGLMFGFLSTKSLDE 171 +E + + + I + A L A ++ I GLM +L + Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFD 186 Query: 172 R 172 Sbjct: 187 L 187
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 64.5 bits (157), Expect = 2e-13 Identities = 71/358 (19%), Positives = 134/358 (37%), Gaps = 45/358 (12%) Query: 23 GVQKSMLGVVFSASLFGLFVGSFLLSLLSDRFGRRPILLISTFIFSILMLLTPHVGNIEQ 82 + G++ + F + +L LSDRFGRRP+LL+S ++ + + Sbjct: 39 NDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWV 98 Query: 83 LTVIRFVTGIFLGGIMPNVMAYSSEIVPYQSRIFTMMVISCGYTVGAMLGGGISALLVPW 142 L + R V GI G AY ++I R +S + G + G + L+ + Sbjct: 99 LYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGF 157 Query: 143 GGWQAIFYFGGIIPLIIFFITFFKLPES-------LYFLSENSKNSSKILFWLKKFYPAL 195 A F+ + + F F LPES L + N S + + + Sbjct: 158 SP-HAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALM 216 Query: 196 TFNSEIKIINNTEVQVKKSPLELFKNQRAFFTYSIWIISILNMISLYFLANWLPTLAKES 255 ++++ QV + +F R F + I I ++ + + + Sbjct: 217 AVFFIMQLVG----QVPAALWVIFGEDR--FHWDATTIGI--SLAAFGILH--------- 259 Query: 256 GLSLNQALLIGSTLQLGGTIGSVVMGLKIDKTGFYKVLIPVFLVAVISVALIGYSVSHIV 315 SL QA++ G G ++++G+ D TG+ L+ ++ + Sbjct: 260 --SLAQAMITGPVAARLGERRALMLGMIADGTGY---------------ILLAFATRGWM 302 Query: 316 LLFIIIFIAGFAIVGGQPAINALSASYYPVSLRTTGVGWSIGIARLGSVIGPLFGGYL 373 I++ +A I G PA+ A+ + + G + L S++GPL + Sbjct: 303 AFPIMVLLASGGI--GMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAI 358 Score = 34.4 bits (79), Expect = 8e-04 Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 8/156 (5%) Query: 248 LPTLAKESGLSLNQALLIGSTLQLGGT---IGSVVMGLKIDKTGFYKVLIPVFLVAVISV 304 LP L ++ S + G L L + V+G D+ G VL+ A + Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 305 ALIGYSVSHIVLLFIIIFIAGFAIVGGQPAINALSASYYPVSLRTTGVGWSIGIARLGSV 364 A++ + + +L+I +AG G A A R G+ G V Sbjct: 88 AIMATA-PFLWVLYIGRIVAGITGATG-AVAGAYIADITDGDERARHFGFMSACFGFGMV 145 Query: 365 IGPLFGGYLSQFLVITHL-FVIAAIPSLFVIIMLMI 399 GP+ GG + F H F AA + + Sbjct: 146 AGPVLGGLMGGFSP--HAPFFAAAALNGLNFLTGCF 179
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 33.2 bits (76), Expect = 0.001 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 21/95 (22%) Query: 145 NDKTPMAVGSTFKLLVLKAYEDAIKKGELKRETIVSLKEKNRSFPTGVLQNLPANTPV-- 202 +++ PM STFK+++ A + G+ + E + ++ Q+L +PV Sbjct: 59 DERFPMM--STFKVVLCGAVLARVDAGDEQLERKIHYRQ----------QDLVDYSPVSE 106 Query: 203 -------NLELLAQLMIQISDNTATDSLIEVLKKP 230 + L I +SDN+A + L+ + P Sbjct: 107 KHLADGMTVGELCAAAITMSDNSAANLLLATVGGP 141
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.011 Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 485 APINGVISAWKVENGEQVTEGQVVAIMEAMKMEVQVLAHRSGVIQIGAE 533 N ++ V+ GE V +G V+ + A+ E L +S ++Q E Sbjct: 101 PIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLE 149
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 29.4 bits (66), Expect = 0.011 Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 151 IWDVVEDAELKTKVTELAERLAKQPTFGLSLIKKAIHQSSNNTFDEQVLLERDLQRIAGR 210 V + E K V+EL L+ P LS +K + S ++ +L + GR Sbjct: 90 YLSKVPELEQKQNVSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGR 149 Query: 211 SE 212 E Sbjct: 150 PE 151
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.031 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 4/104 (3%) Query: 108 SREDQDAFALRSQQKTAAAQQNGFFNDEILPVEITD----RKKNVVVVNRDEHPRETTLE 163 + ++ A A+ + K + F I + + ++++ + + Sbjct: 637 NGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQ 696 Query: 164 ALAKLKAPFKKEGGSVTAGNASGVNDGAACVLITNREFANTYGL 207 A +L + S+ + +G+ D A L ++E A G+ Sbjct: 697 ARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGV 740
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.1 bits (101), Expect = 9e-08 Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 9/153 (5%) Query: 2 TFYKYFPSKESLIMECLNHRNINIQ---NSIYEKLSLHPAVSPIEKIHLIFNWYIDWVNS 58 Y +F K L E NI K P E + + + Sbjct: 47 AIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERR 106 Query: 59 ENFNGCLFKKAFI--EVSKQYTSIREPFQEYTNWLINLLNSLLVELDIK---DPTPLTHI 113 +F K E++ + R E + + L + + I Sbjct: 107 RLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAII 166 Query: 114 IISIIDGIIIDGTIDKDLID-PSKKWQYIEYLI 145 + I G++ + D + Y+ L+ Sbjct: 167 MRGYISGLMENWLFAPQSFDLKKEARDYVAILL 199
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 721 bits (1862), Expect = 0.0 Identities = 244/840 (29%), Positives = 391/840 (46%), Gaps = 51/840 (6%) Query: 11 FDTNFLVGNAQ-KIDIGRFKYGNPILPGEYSLDVYINGQWLGKRKFVFKSTHSNENAKTC 69 F+ FL + Q D+ RF+ G + PG Y +D+Y+N ++ R F + S + C Sbjct: 49 FNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPC 108 Query: 70 FTPDMLLEYGVKPEIFHH-EVSSTYTCNDLDKWVNDAFYQFDTSRLRLDISIPQVALQKN 128 T L G+ + + C L ++DA Q D + RL+++IPQ + Sbjct: 109 LTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRLNLTIPQAFMSNR 168 Query: 129 AQGYVDPRLWDRGINAAFFAYNASAYRIVNNNHETNH-AFMGTNVGLNLYDWQLRHTGQW 187 A+GY+ P LWD GINA YN S + N +H A++ GLN+ W+LR W Sbjct: 169 ARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTW 228 Query: 188 KWQDHNEIQEKVSSYTSNNTYAQKAFPKLNSVVTLGDYFTNNNFFDALPYRGINISSDDR 247 + + + + NT+ ++ L S +TLGD +T + FD + +RG ++SDD Sbjct: 229 SYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDN 288 Query: 248 MLPNSMLGYAPQIRGYAKTNAKVEVRQQGNLIYQTTLTPGSFEINDLYPTGFGGELQVSI 307 MLP+S G+AP I G A+ A+V ++Q G IY +T+ PG F IND+Y G G+LQV+I Sbjct: 289 MLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTI 348 Query: 308 YETNGEIQKFSIPYASVIEMLRPKMSRYSFTLGQFRDAN-INLKPWLVQGKYQRGINNYL 366 E +G Q F++PY+SV + R +RYS T G++R N KP Q G+ Sbjct: 349 KEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGW 408 Query: 367 TSYTGFQATENYQSFLIGSAFAT-PIGAISFDATQSSAEFEQKPTLKGRSYRLSYNRLFT 425 T Y G Q + Y++F G +GA+S D TQ+++ G+S R YN+ Sbjct: 409 TIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLN 468 Query: 426 PTNTNLTLATYRYSTENYLKLRDSILIRDLQQQDIDSFSVG--------------KQKSE 471 + TN+ L YRYST Y D+ R V ++ + Sbjct: 469 ESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGK 528 Query: 472 FQITLNQGLPNQWGNFYLVGSWINYWNQPNRNQQFQFGYSNQFKDLTYSISAITHEFDQE 531 Q+T+ Q L YL GS YW N ++QFQ G + F+D+ +++S Sbjct: 529 LQLTVTQQLGR-TSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSY------SL 581 Query: 532 NQNSGH---ETQYLLSLSFPLQFKKN----------TVNFNSSIAKDSRTLGMSGYIG-- 576 +N+ + L+++ P + +++ S + R ++G G Sbjct: 582 TKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTL 641 Query: 577 ---NRFDYGSSISYQDAG----QTSLNINGTYRTNYTTIGASFGQSDTYQQEMINLNGSL 629 N Y Y G ++ YR Y + SD +Q ++G + Sbjct: 642 LEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGV 701 Query: 630 VAHSQGILFGPDQVQTMVLVYAPQATGARVGNTPGLSINKQGYAVIPYVTPYRLNDISLD 689 +AH+ G+ G T+VLV AP A A+V N G+ + +GYAV+PY T YR N ++LD Sbjct: 702 LAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALD 761 Query: 690 PQGMPSTVELTETSHRIAPYAGSITKVNFSTKTGYAVFISTQTPNGGHLPFAAQVFNQNN 749 + V+L + P G+I + F + G + + T T N LPF A V ++++ Sbjct: 762 TNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLM-TLTHNNKPLPFGAMVTSESS 820 Query: 750 EIVGMVAQGSRIYLRTPLTQDHLYVKWGQSNSEECQLDYDIQSKILQEKQSIIMTEAVCK 809 + G+VA ++YL + VKWG+ + C +Y + + ++Q + A C+ Sbjct: 821 QSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPE--SQQQLLTQLSAECR 878
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.8 bits (67), Expect = 0.011 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 20 LLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRL 79 +L+ D I V++QA G+D + I +G D+V+T P + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-DLVVTDVVMP-DENAF 63 Query: 80 SEVARIKGWDAD 91 + RIK D Sbjct: 64 DLLPRIKKARPD 75
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 40.0 bits (93), Expect = 1e-06 Identities = 12/54 (22%), Positives = 26/54 (48%) Query: 2 TLDVLAAELDLAKGTLYKHFQSKDELYMLLIIRNERMLLEMVQDTEKAFPEHLA 55 +L +A + +G +Y HF+ K +L+ + +E + E+ + + FP Sbjct: 33 SLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPL 86
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 31.8 bits (72), Expect = 7e-04 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 11/138 (7%) Query: 1 MVVIVIMTIMTSLVVLNIGGVDQKKAMQARELFLLDLQKINKESLDQSRVLALETHGETD 60 M+++++M + +V+L A Q F L+ + + L + + Sbjct: 12 MLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFFGVS------ 65 Query: 61 VSPFSYELYEYHDQSTLQVQNIKNRWQKYTEFKTRQLPAHVSFSVQPLDDQ--NYSKAKN 118 V P ++ + + W Y R S S + N + A+ Sbjct: 66 VHPDRWQFLVLEARDGADPAPADDGWSGYRWLPLRAGRVATSGS---IAGGKLNLAFAQG 122 Query: 119 TDLIGGQTPQLIWFGNGE 136 G P ++ F GE Sbjct: 123 EAWTPGDNPDVLIFPGGE 140
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 98.2 bits (245), Expect = 8e-31 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 1 MIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVGRNPK 60 +I ++A L + AV + + L+ ++++ GFG+F + R R GRNP+ Sbjct: 7 LIAKVAEAT-ELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRNPQ 65 Query: 61 TGKSVDVAAKAVPHFKPGKALRDAV 85 TG+ + + A VP FK GKAL+DAV Sbjct: 66 TGEEIKIKASKVPAFKAGKALKDAV 90
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 104 bits (261), Expect = 1e-26 Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 33/263 (12%) Query: 36 VEISAEILKQ-LKARAEDSLQNPVNGAVITVPAYFDEAQRQATRDAAQLAGLNVLRLLNE 94 ++ ++L+ +K +S P ++ VP + +R+A R++AQ AG + L+ E Sbjct: 84 FFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEE 143 Query: 95 PTAAAVAYGLDQESNLATDRNYVIYDLGGGTFDVSILRFSQGVFEVLATGGHTALGGDDL 154 P AAA+ GL + ++ D+GGGT +V+++ + V +GGD Sbjct: 144 PMAAAIGAGLPVSEATGS----MVVDIGGGTTEVAVISLNGVV-----YSSSVRIGGDRF 194 Query: 155 DRLIVKWAKKQLNIDVLSDEDYAVFIVAARQAKEQLST----QDSVELKL--------LE 202 D I+ + ++ ++ + A + K ++ + + E+++ + Sbjct: 195 DEAIINYVRRNYGS-LIGEA-------TAERIKHEIGSAYPGDEVREIEVRGRNLAEGVP 246 Query: 203 ATLTLDRPTFESIIQVALDKTISVCKRVLRDAKLEL-TDIQN--VVLVGGSTRSYAVQKA 259 TL+ +Q L +S L EL +DI +VL GG + + Sbjct: 247 RGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRL 306 Query: 260 VREVFAQEPLCTINPDEVVAIGA 282 + E + +P VA G Sbjct: 307 LMEETGIPVVVAEDPLTCVARGG 329
>PF04183#IucA / IucC family Length = 580 Score = 211 bits (539), Expect = 8e-64 Identities = 85/446 (19%), Positives = 171/446 (38%), Gaps = 33/446 (7%) Query: 34 ASLLEKWIQSRDALLQFLKQRHN-DFDDLVKAGQNFIESEQALILGHSMHPAPKSRNGFV 92 A ++ + LQ LK R DL+ + Q L+ GH K R G+ Sbjct: 93 AEHMQDLYATLLGDLQLLKARRGLSASDLINL---NADRLQCLLSGHPKFVFNKGRRGWG 149 Query: 93 HEDWLKFSPEHAGKTQLHYWLVHQNYIAEGCATEQPISDQVKDAI---RWYLSESDLNLL 149 E +++PE+A +LH+ V + ++ C E I + A+ + Sbjct: 150 KEALERYAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQEFARFSQVWQEN 209 Query: 150 KTHVEFKLLPLHPWQARYLQGKPWFEQLKQTGQLIDIGLRGWQFSPTTSIRTLASFNAPW 209 + LP+HPWQ + + + G+++ +G G Q+ S+RTL + + Sbjct: 210 GLDHNWLPLPVHPWQWQQKIATDFIADFAE-GRMVSLGEFGDQWLAQQSLRTLTNASRRG 268 Query: 210 --MVKTSLSVMITNSIRVNLAKECHRGEISYRLWHSDLGKKILKQCPTLKAVNDPAWIAL 267 +K L++ T+ R + G ++ R + +PA + Sbjct: 269 GLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYV 328 Query: 268 QIDGEIINETICIFRDQPFAVQQQVTCI---ASLCQDHPNKELNRFNALFDQIAQKNQQT 324 +G P+ Q+ + I P++ L + +N Q Sbjct: 329 SHEGYA------ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLME--CDENNQP 380 Query: 325 -------NFKEIALDWFDHFLKIGLAPLMYVYHKYGMAFESHQQNVLLELEDGLPKNLWL 377 A W ++ + PL ++ +YG+A +H QN+ L +++G+P+ + L Sbjct: 381 LAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLL 440 Query: 378 RDNQG-FYYIEEFATEIVEALPDLLEKAHAVGPKDF-VDERFSYYFFGNTLFGLINAIGP 435 +D QG ++E E+ ++LP + + D+ + + + +F T+ I+ + Sbjct: 441 KDFQGDMRLVKEEFPEM-DSLPQEVRDVTSRLSADYLIHDLQTGHFV--TVLRFISPLMV 497 Query: 436 TGYISEDELLIHLQQNLLQLLEQYPD 461 + E L L ++++P Sbjct: 498 RLGVPERRFYQLLAAVLSDYMKKHPQ 523
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 126 bits (319), Expect = 3e-34 Identities = 89/430 (20%), Positives = 180/430 (41%), Gaps = 19/430 (4%) Query: 9 LNNSSFNPAIPHLMSYFQVGEVWASWVVVAFLLAMSISLPLAGFLSQRFGKRSIYLIALL 68 LN N ++P + + F +WV AF+L SI + G LS + G + + L ++ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 69 GFALASTAGGLFNQFESVLI-ARALQGFCSGLMIPLSLGLIFSVTPSEQRGSTTGLWGAM 127 S G + + F S+LI AR +QG + L + ++ P E RG GL G++ Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 128 IMLTLAVGPMLGALVLVWLNWKALFFINLPVACLALILGYVFLPKEQGDNKQEFDWAGFF 187 + + VGP +G ++ +++W + + +P+ + + + L K++ K FD G Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGII 205 Query: 188 FLGSSIVLLLGTLSQIHQIQDLFQPLYGAL-LVLSVLLFIRFIFLQKNKSMPLIEPALFA 246 + IV + LF Y L++SVL F+ F+ + + P ++P L Sbjct: 206 LMSVGIVFFM-----------LFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGK 254 Query: 247 TKGFRYSLVICVAQTVGLFIGMLLIPLWIQHLLKLSPLWTGFALMSSAVVTGICSQP-AG 305 F ++ + + ++P ++ + +LS G ++ ++ I G Sbjct: 255 NIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGG 314 Query: 306 KYLDHYGAAKIMSLGLMITVASFLLLAWAPIQNVWFIVFCMILHGLGMGLSYMPSTTAGL 365 +D G ++++G+ SFL ++ WF+ ++ G+ + +T Sbjct: 315 ILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVS 374 Query: 366 NSLRQQQQHLVTQAAALNNLFRRIFAAVAVVIAALYLQLRQQSLPLNTQAIFTSFHTMQE 425 +SL+QQ+ +L N + + I L + L + S + Sbjct: 375 SSLKQQE---AGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQRLLPMEVDQSTYLYSN 431 Query: 426 IFVCCAILIL 435 + + + +I+ Sbjct: 432 LLLLFSGIIV 441
>PF04183#IucA / IucC family Length = 580 Score = 98.4 bits (245), Expect = 7e-26 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 22/198 (11%) Query: 32 VEQRVIKQLLQALIFEDIIHSEYDGKNFIIEVQNSQGQTIRYVAAGQRQYSYKLVRLARN 91 V +R++ ++L L +E + H+E G + + Q+ + R Sbjct: 9 VNRRLVAKMLSELEYEQVFHAESQGDDRYC------------INLPGAQWRFIAERGIWG 56 Query: 92 QDVFRQDENGHYQIATLNLVIDEILRTITDAAKVED-----FIFELKRTFIHDLQSQAC- 145 + + A ++ +L + + D + +L T + DLQ Sbjct: 57 W---LWIDAQTLRCADEPVLAQTLLMQLKQVLSMSDATVAEHMQDLYATLLGDLQLLKAR 113 Query: 146 FDHYALPAIQYPYDILESYLMDGHPYHPCYKSRVGFSLQDNVRYGVEFAQPIALVWLAVH 205 A I D L+ L+ GHP K R G+ + RY E+A L WLAV Sbjct: 114 RGLSASDLINLNADRLQC-LLSGHPKFVFNKGRRGWGKEALERYAPEYANTFRLHWLAVK 172 Query: 206 QDIVAKKHSEDIEPDSFF 223 ++ + + +++ Sbjct: 173 REHMIWRCDNEMDIHQLL 190
>PF04183#IucA / IucC family Length = 580 Score = 249 bits (638), Expect = 1e-80 Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 19/319 (5%) Query: 1 MTNLQHPEKPYIKLSMSLTNTSSSRVLAKHTVMNGPIITDWLQRLIKQSKTAQELDFAVL 60 +TN IKL +++ NTS R + + GP+ + WLQ++ T + +L Sbjct: 261 LTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVIL 320 Query: 61 REVYGLSVD---FTKLPKSHAQQAYGTIGCLWRESVHQYLREGEDAIPLNGVSHIQKDGQ 117 E V + L ++ + +G +WRE+ ++L+ E + + + ++ Q Sbjct: 321 GEPAAGYVSHEGYAALARAPYRYQ-EMLGVIWRENPCRWLKPDESPVLMATLMECDENNQ 379 Query: 118 ALIAPWLQQYG--VESWTRQLLKVVITPLIHLLFAEGIATESHGQNIILVHKQGWPTRVL 175 L ++ + G E+W QL +VV+ PL HLL G+A +HGQNI L K+G P RVL Sbjct: 380 PLAGAYIDRSGLDAETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVL 439 Query: 176 LKDFHDGVRYSPAHLAHPELAPELDQLPPEHAKTNSMSFILTDDLNGIRDFSCACLFFVA 235 LKDF +R PE+D LP E + + FV Sbjct: 440 LKDFQGDMRLVKEEF------PEMDSLPQEVRD------VTSRLSADYLIHDLQTGHFVT 487 Query: 236 LTDIAIFLNQDFDLPEKNFWQWAAEVIQNYQQQHPEHASRYQLFDVFAEKLRIESLTKRR 295 + L +PE+ F+Q A V+ +Y ++HP+ + R+ LF +F ++ L + Sbjct: 488 VLRFISPLMVRLGVPERRFYQLLAAVLSDYMKKHPQMSERFALFSLFRPQIIRVVLNPVK 547 Query: 296 L-FGDRSIQIKFVDNPLAP 313 L + D + + N L Sbjct: 548 LTWPDLDGGSRMLPNYLED 566
>PF04183#IucA / IucC family Length = 580 Score = 192 bits (489), Expect = 3e-56 Identities = 111/512 (21%), Positives = 195/512 (38%), Gaps = 37/512 (7%) Query: 54 SADKVQAFYEQLQKCL-KQYHLLQQHR-VNAHDLLNQSSAHRFRILEQYAGYRDRPYHPL 111 S V + L L LL+ R ++A DL+N ++ +L P Sbjct: 88 SDATVAEHMQDLYATLLGDLQLLKARRGLSASDLINLNADRLQCLLS------GHPKFVF 141 Query: 112 AKLKEGLSQQEYMQYCPEFAQELSIHWVAVHKDKMMFGEGVENIFKQQPSEIFIPRAERY 171 K + G ++ +Y PE+A +HW+AV ++ M++ E Q + P+ E Sbjct: 142 NKGRRGWGKEALERYAPEYANTFRLHWLAVKREHMIWRCDNEMDIHQLLTAAMDPQ-EFA 200 Query: 172 QLKQEMFQRGLNETHIAMPIHPWQFEHLLPKFYADDIAEGICHPLNFMSKGMYASASMRS 231 + Q + GL+ + +P+HPWQ++ + + D AEG L A S+R+ Sbjct: 201 RFSQVWQENGLDHNWLPLPVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRT 260 Query: 232 LLSK-NVLEESLKLPIGIKALGSLRFLPIVKMINGEKNQKLLQQAKAKDAVLKQKLWLCE 290 L + +KLP+ I R +P + G + LQQ A DA L Q + Sbjct: 261 LTNASRRGGLDIKLPLTIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVIL 320 Query: 291 ETQWWSYLPEKQNDRTADNEWLFVEKPTHLAAQRRHIPAELLQEPYQLIPMASLGHTI-T 349 Y+ + A + + E L R P L+ + MA+L Sbjct: 321 GEPAAGYVSHEGYAALARAPYRYQE---MLGVIWRENPCRWLKPDESPVLMATLMECDEN 377 Query: 350 GQPAIFDYILQLQHKDINSKQILIEFEKLCTCFFDVNLRLF-RLGLMGEIHGQNICLVLK 408 QP YI ++++ +L L R G+ HGQNI L +K Sbjct: 378 NQPLAGAYI---DRSGLDAETW---LTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMK 431 Query: 409 NGEFDGLMFRD-HDSLRIYLPWVEQSGLKDPNYLSPHDFRNTLYHESIEALLFYIQTLGI 467 G ++ +D +R+ + + L P + R+ S + L+ +QT G Sbjct: 432 EGVPQRVLLKDFQGDMRLVKEE-----FPEMDSL-PQEVRDVTSRLSADYLIHDLQT-GH 484 Query: 468 QVNLGCIVDNLASHYQIEVKDLWSVLAHALQQVIQNLNFQ-PEILAQLQHLLFEVPEWPY 526 V + + L + + + +LA V+ + + P++ + P+ Sbjct: 485 FVTVLRFISPLMVRLGVPERRFYQLLA----AVLSDYMKKHPQMSERFALFSLFRPQIIR 540 Query: 527 KQLLRPLL---EQDTRIGSMPSGIGKTRNPLW 555 L L + D +P+ + +NPLW Sbjct: 541 VVLNPVKLTWPDLDGGSRMLPNYLEDLQNPLW 572
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.7 bits (90), Expect = 3e-05 Identities = 78/402 (19%), Positives = 137/402 (34%), Gaps = 76/402 (18%) Query: 2 ICNEFNLSPTQWGYTIAAITLSLAVLSIPVAALSDKHASGWKRGIFQWPLVIGFTFISLL 61 I N+FN P + A L+ ++ + LSD+ G KR L+ G Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQL--GIKR-----LLLFGIIINCFG 92 Query: 62 SGITSLSSSFYKFVTL-RIMVSLGCGVAEPVGVSNTAEWWPKEHRGFAIG---------- 110 S I + SF+ + + R + G + + A + PKE+RG A G Sbjct: 93 SVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGE 152 Query: 111 ----------AHHSGYPVGALLSGVAMATIIT--YFGPQNWRYAF---FLGIIFAVPALT 155 AH+ + L+ + + T+ + R GII + Sbjct: 153 GVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIV 212 Query: 156 FWAIYSTRKRYSEF------------HQSCVDNQFTPPTDFVHDEGEEKTSTHSTWERLK 203 F+ +++T S H V + F P + Sbjct: 213 FFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKN----------------- 255 Query: 204 QTLSSRGIVFTAASTLITHVVYIGFLTIFPAFLYNIVGLDLAKSAGLSAVF--TITGMMG 261 + I GF+++ P + ++ L A G +F T++ ++ Sbjct: 256 -----IPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTA-EIGSVIIFPGTMSVIIF 309 Query: 262 QIIWPTLSDKIGRRLTLILCGCWMAVS--IASFCL--TSGVVSVIAIQLFFGLSANAIWP 317 I L D+ G L + +++VS ASF L TS +++I + + GLS Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKT-- 367 Query: 318 IFYATASDYAPAGAIGTANSLITVAQYVGGAVAPIIMGYLLT 359 + S G SL+ ++ I+G LL+ Sbjct: 368 VISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409 Score = 31.4 bits (71), Expect = 0.007 Identities = 42/185 (22%), Positives = 66/185 (35%), Gaps = 20/185 (10%) Query: 225 YIGFLTIFPAFLYNIVGLDLAKSAGLS--------AVFTITGMMGQIIWPTLSDKIG-RR 275 + F ++ + N+ D+A F +T +G ++ LSD++G +R Sbjct: 21 ILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKR 80 Query: 276 LTLILCGCWMAVSIASFCLTSGVVSVIAIQLFFGLSANAIWPIFYATASDYAPAGAIGTA 335 L L S+ F S +I + G A A + + Y P G A Sbjct: 81 LLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKA 140 Query: 336 NSLITVAQYVGGAVAPIIMGYLLTSFGGWHSHQGYIWCFLLMSCCAFIGVILQIILGYLI 395 LI +G V P I G + W +LL+ I +I L L+ Sbjct: 141 FGLIGSIVAMGEGVGPAIGGMIAHYIH---------WSYLLL--IPMITIITVPFLMKLL 189 Query: 396 KKEKS 400 KKE Sbjct: 190 KKEVR 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 33.7 bits (77), Expect = 0.001 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 229 LWMPQILKAFH-LTAMQTGLLNMIPFGLAAAFM-IVWGVHADKSGN-KSLNTAIPLFVTS 285 +P ++K H L+ + G + + P ++ + G+ D+ G LN + S Sbjct: 277 SMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVS 336 Query: 286 FGLLLTIFTSSLTLSLLLFSLVLMGNYAIKGPFWALVSERLPPTLVAVGIAAVNTIAHIG 345 F + ++ ++ VL G K +VS L G++ +N + + Sbjct: 337 FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLS 396 Query: 346 TGLMNSIMG 354 G +I+G Sbjct: 397 EGTGIAIVG 405
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 9e-08 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 5/179 (2%) Query: 4 IICFLIIFTDGIDTAAMGFIAPALAQDWGVDRSQ---LGPVMSAALGGMIIGALVSGPTA 60 I+ + D + + + P L +D G +++ A V G + Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 61 DRFGRKIVLAFSMLVFGGFTLASAYATNLDSLVVLRFLTGIGLGAAMPNATTLFSEYCPT 120 DRFGR+ VL S+ A A L L + R + GI GA A ++ Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDG 126 Query: 121 RIRSLLVTCMFCGYNLGMATGGFISSWLIPTYGWHSLFLLGGWSPLILMILVILVLPES 179 R+ M + GM G + + + H+ F + + +LPES Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPES 184
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 28.6 bits (64), Expect = 0.018 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 184 AEFMQKAINNSQLAKLE-ASHLSNIEQPQRFTQELTRFIQ 222 Q+ + + ++ SH + E P + + R Q Sbjct: 139 LTVWQQLRAMANVGEMTLMSHFAEAEHPDGISGAMARIEQ 178
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 27.1 bits (60), Expect = 0.016 Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 9 PFISVEIIDSTEIAQDYFNKARASIQSILDQAKEQ 43 PF+ E+ +A+ F+++ SIQ ++ Q KE+ Sbjct: 485 PFVHHELTKGIAVAEISFDESILSIQELMYQVKEE 519
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 199 bits (508), Expect = 2e-64 Identities = 82/292 (28%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 21 TTQSNPDWGLDRIDQKALPLNSTYSYLQTGSGTTAYIVDTGILSSHQEFSGRVLSGYTAI 80 + G++ I A+ + G G ++DTG + H + R++ G Sbjct: 17 QQVNEIPRGVEMIQAPAVWNQTR------GRGVKVAVLDTGCDADHPDLKARIIGGRNFT 70 Query: 81 SDGNG----TTDCNGHGTHVAGTVGGT-----TYGVAKSVNLVPIRILGCDGSGASSNVI 131 D G D NGHGTHVAGT+ T GVA +L+ I++L GSG +I Sbjct: 71 DDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWII 130 Query: 132 AGLDWILKNGKKPAVVNMSLGGATSSS-LDSAVENLYNNGYVMVVAAGNSNTDA----CT 186 G+ + ++ +++MSLGG L AV+ + +++ AAGN Sbjct: 131 QGIYYAIEQKVD--IISMSLGGPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTDEL 188 Query: 187 SSPARVSKAITVAATDNTDTRASYSNYGSCVDIFAPGSQINSSWIGSNTATKILNGTSMA 246 P ++ I+V A + + +SN + VD+ APG I S+ G AT +GTSMA Sbjct: 189 GYPGCYNEVISVGAINFDRHASEFSNSNNEVDLVAPGEDILSTVPGGKYAT--FSGTSMA 246 Query: 247 TPHVAGVVAEMLQSTPTASPQTISTNLLNQASSNVVKNPSGSPNRLLYNLLN 298 TPHVAG +A + Q + + ++ L SP LL Sbjct: 247 TPHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGNSPKMEGNGLLY 298
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 30.1 bits (68), Expect = 0.005 Identities = 8/37 (21%), Positives = 17/37 (45%) Query: 124 SKATLLSGIYDLLPIQETHLNHVLNLSQEDILKYSPI 160 K L + + + L ++ Q+D++ YSP+ Sbjct: 68 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 104
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 303 bits (778), Expect = 5e-96 Identities = 112/421 (26%), Positives = 179/421 (42%), Gaps = 65/421 (15%) Query: 356 QDGDVLVSDMTDPDWEPVMK-RAAAIITNRGGRTCHAAIIARELGVPAIVGCGNATEVLT 414 ++ ++ D+T D + K T+ GGRT H+AI++R L +PA+VG TE + Sbjct: 155 EETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQ 214 Query: 415 DGQEVTVSCAEG---------DTGFIYEGALDFEVQRNSIESMPKL--------SFKIMM 457 G V V EG + E FE Q+ + ++ Sbjct: 215 HGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAA 274 Query: 458 NVGNPDRAFDFAQIPNEGIGLARLEFIINRMIGVHPKALLNIESLPRETRAAVMTRTAGY 517 N+G P EGIGL R EF+ ++ + LP E Sbjct: 275 NIGTPKDVDGVLANGGEGIGLYRTEFLY-----------MDRDQLPTE------------ 311 Query: 518 ASPVEFYVEKLVEGIATLAAAFADKPVIVRMSDFKSNEYANLIGGKLYEPEEENPMLGFR 577 E+ E + KPV++R D ++ + L P+E NP LGFR Sbjct: 312 --------EEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSY----LQLPKELNPFLGFR 359 Query: 578 GASRYVSDNFRDCFELECRALKKVRDEMGLTNIQIMIPFVRTVSE---AKRVIELLAQNG 634 + +D F + RAL + N+++M P + T+ E AK +++ Sbjct: 360 AIRLCLE--KQDIFRTQLRALLRAS---TYGNLKVMFPMIATLEELRQAKAIMQEEKDKL 414 Query: 635 LKRG---ENGLKVIMMCELPTNALLAEQFLEHFDGFSIGSNDLTQLTLGLDRDSGIVSHL 691 L G + ++V +M E+P+ A+ A F + D FSIG+NDL Q T+ DR + VS+L Sbjct: 415 LSEGVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYL 474 Query: 692 FDERDAAVKALLSMAIHACRKAGKYVGICGQGPSDHPDLAKWLMEQGIESVSLNPDSVLD 751 + A+ L+ M I A GK+VG+CG+ D L+ G++ S++ S+L Sbjct: 475 YQPYHPAILRLVDMVIKAAHSEGKWVGMCGEMAGD-EVAIPLLLGLGLDEFSMSATSILP 533 Query: 752 T 752 Sbjct: 534 A 534
>DNABINDNGFIS#DNA-binding protein FIS signature. Length = 98 Score = 95.8 bits (238), Expect = 9e-30 Identities = 42/71 (59%), Positives = 61/71 (85%) Query: 16 LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG 75 LR V +A+++YFAQL G+ + +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG Sbjct: 27 LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG 86 Query: 76 TLRKKLKAHGL 86 TLRKKLK +G+ Sbjct: 87 TLRKKLKKYGM 97
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 49.4 bits (118), Expect = 1e-08 Identities = 52/286 (18%), Positives = 103/286 (36%), Gaps = 38/286 (13%) Query: 12 FIFRPLGGLFFGHLGDKYGRQKVLAITVIIMSISTFGIGLIPSYETIGLWAPILLLIVKI 71 F P+ G L D++GR+ VL +++ ++ + P LW +L I +I Sbjct: 57 FACAPVLG----ALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-----LW---VLYIGRI 104 Query: 72 VQGFSIGGEYSGAAIFVAEYSPDRKR----GFMGSWLDFGSIAGFVLGAATVALITHAVG 127 V G + G + A ++A+ + +R GFM + FG +AG VLG Sbjct: 105 VAGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---------- 153 Query: 128 EARFAEWGWRIPFFLALPLGIIGLYLRNRLEETPVYQQHSEQQAQKSKPQKFSFKEIFVK 187 + PFF A L + L + + + P SF+ Sbjct: 154 ---MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLA-SFRWARGM 209 Query: 188 HKRSLLVCIGLVISTNVTYYMLLTYLPSYFSHNLGYSEAHGALIIIAVMVGMLFVQPVI- 246 + L+ + ++ L + + + + + A + Q +I Sbjct: 210 TVVAALMAVFFIMQLVGQVPAALWVI--FGEDRFHWDATTIGISLAAFGILHSLAQAMIT 267 Query: 247 GYLSDKFGRRPFIFIGSFSLIFLSYPAFVLLNSGVNYQIFIGLLIL 292 G ++ + G R + +G + ++LL + +++L Sbjct: 268 GPVAARLGERRALMLG----MIADGTGYILLAFATRGWMAFPIMVL 309 Score = 39.8 bits (93), Expect = 1e-05 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 12/126 (9%) Query: 196 IGLVISTNVTYYMLLTYLPSYFSHNLGYSEAHGALIIIAVMVGMLFVQPVIGYLSDKFGR 255 IGL++ V +L + S AH +++ + PV+G LSD+FGR Sbjct: 21 IGLIMP--VLPGLLRDLVHS------NDVTAHYGILLALYALMQFACAPVLGALSDRFGR 72 Query: 256 RPFIFIGSFSLIFLSYPAFVLLNSGVNYQIFIGLLILALSLNMSIGVMASTLPALFPTEI 315 RP + + SL + ++ + + ++IG ++ ++ + V + + + + Sbjct: 73 RPVLLV---SLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDE 128 Query: 316 RYSALG 321 R G Sbjct: 129 RARHFG 134
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 385 bits (990), Expect = e-123 Identities = 138/755 (18%), Positives = 267/755 (35%), Gaps = 79/755 (10%) Query: 93 LDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPEVAQSGI-GLLNNYDF--YT 149 + D + + Q L P A+M + G + PE+ GI L NY+F + Sbjct: 139 TSMIHDATAQLDVGQQRLNLTIPQAFMSNRARG---YIPPELWDPGINAGLLNYNFSGNS 195 Query: 150 YRPYQGGSTSSLFTEQRFFSPLGV--IKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQ 207 + GG++ + + +G ++++ + N ++ S + ++ +T + Sbjct: 196 VQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNS----SDSSSGSKNKWQHINTWLE 251 Query: 208 FDNQKNATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPS 267 D + LGD T + + G Q+ + + PD P G A + Sbjct: 252 RDIIPLRSRLTLGDGYTQG-DIF-DGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTA 309 Query: 268 TVDLIINGQKTSSTEVQSGPFILNNVPFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLL 327 V + NG ++ V GPF +N++ G+ V +A G +VP+ L Sbjct: 310 QVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQ 369 Query: 328 KPGLFDYSLSLGKIREDYGLKNFSYGKFASAADARYGVNDWLTVEGRTELSSDLQLWGAG 387 + G YS++ G+ R + + +G+ T+ G T+L+ + + G Sbjct: 370 REGHTRYSITAGEYRSGNAQQ---EKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFG 426 Query: 388 SVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSIN------- 440 + LG LS TQ+ + +G Y+ + N G +I Sbjct: 427 IGKNMGALGALSVDMTQANSTL----PDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYS 482 Query: 441 -------HNQRDDEYTDLSRLQYSNLISVNSNKSLTANTYFATKNS---------GTFGV 484 + + +I V + N + + G Sbjct: 483 TSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTST 542 Query: 485 GYINTKANDFKN-----RFLNLSWAPVLPTYMNGVTVSLSA--NRDFIEKEWSAAFQL-- 535 Y++ + T + +LS ++ +K L Sbjct: 543 LYLSGSHQTYWGTSNVDEQFQAGLN----TAFEDINWTLSYSLTKNAWQKGRDQMLALNV 598 Query: 536 SIPL----------FQRNATVNSGYAFNKQGDTGY-LNFNRSVPSEGGFGVDL----TRR 580 +IP R+A+ + + + G ++ + + Sbjct: 599 NIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGG 658 Query: 581 FNENSEDLNQARVNYRNSYINTDFGLSGNHDY-NYWFGLSGSLIYMAGDLFASNRLGESF 639 + NS A +NYR Y N + G S + D ++G+SG ++ A + L ++ Sbjct: 659 GDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTV 718 Query: 640 ALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFTITQVEQ 699 L+ D + EN R++ +G+ +P T Y + ++D L N + Sbjct: 719 VLVKAPGAKD--AKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVA 776 Query: 700 RIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVV-HRADQESSYVGMDGIVYLE 758 + RG+ V +F I + LT + KP+P G++V + Q S V +G VYL Sbjct: 777 NVVPTRGAIVRAEFKARVGIKLLMTLTH-NNKPLPFGAMVTSESSQSSGIVADNGQVYLS 835 Query: 759 NLKPNNTVTVQ--RSDQNICKADFSVDVEQAKQQI 791 + V V+ + C A++ + E +Q + Sbjct: 836 GMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLL 870
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 121 bits (305), Expect = 3e-35 Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 10/252 (3%) Query: 18 QIIIVTGGGSGIGRCTAHELASLGAQVILTGRTEEKLQQVKQEIIEDGGKASYRVCDNRD 77 +I +TG GIG A LAS GA + EKL++V + + A D RD Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 78 EEKVKQTVSSIVEEFGQINGLVNNAGGQFPAFLETMSANAFDSVIRNNLLGTFLMMREVF 137 + + + I E G I+ LVN AG P + ++S +++ N G F R V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 138 NQSMVKTGGSIVNMTIDMWSGLP--SMGHSGAARAGIDNLTKTSALEWARAGVRVNAVAP 195 M + GSIV + + +G+P SM +++A TK LE A +R N V+P Sbjct: 129 KYMMDRRSGSIVTVGSNP-AGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 196 G-------WVMASGLDSYKDGMKAMIPTVSSKIPLKRMATESEVSALMCFLLSPAASFIT 248 G W + + + + +K + T + IPLK++A S+++ + FL+S A IT Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHIT 247 Query: 249 GMNVRIDGGASL 260 N+ +DGGA+L Sbjct: 248 MHNLCVDGGATL 259
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 82.3 bits (203), Expect = 8e-19 Identities = 59/194 (30%), Positives = 83/194 (42%), Gaps = 29/194 (14%) Query: 61 IENAIGGAYDDILVGNNLSNRLEGGAGNDTLKGNWGDDVLLGGAGNDTLDGGKGADSLIG 120 +E IG D G+ ++ G G+D ++GN G+D L G GNDTL GG G D L G Sbjct: 719 VEELIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYG 778 Query: 121 GTGDDTYYVDNVGDSIVENTSEGNDKVISDINYTLGDNLENLTLNGADNLNGNGNALNNV 180 G G+D + + N +G+D+ + NV Sbjct: 779 GDGNDKLIGVAGNNYL--NGGDGDDEFQV----------------------QGNSLAKNV 814 Query: 181 IIGNAGNNNLNGYAGNDTLNGGAGNDTLDGGAGNDT--LDGGIGIDTLI--GGLGDDIYY 236 + G GN+ L G G D L+GG G+D L GG GND G G + GG D + Sbjct: 815 LFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSL 874 Query: 237 VD-NVNDVIIEKIN 249 D + DV ++ Sbjct: 875 ADIDFRDVAFKREG 888 Score = 75.0 bits (184), Expect = 2e-16 Identities = 78/333 (23%), Positives = 117/333 (35%), Gaps = 57/333 (17%) Query: 64 AIGGAYDDILVGNNLSNRLEGGAGNDTLKGNWGDDVLLGGAGNDTLDGGK---------G 114 + G DD + + S + G G+D + + D L G + G Sbjct: 614 SHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGGD 673 Query: 115 ADSLIGGTGDDTYYVDNVGDSI----VENTSEGNDKV-----ISDINYTLGDNLENLTLN 165 L + V + E T + + + +G + Sbjct: 674 VKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTRADKFFG 733 Query: 166 GADNLNGNGNALNNVIIGNAGNNNLNGYAGNDTLNGGAGNDTLDGGAGNDTLDGGIGIDT 225 +G +++I GN GN+ L G GNDTL+GG G+D L GG GND L G G + Sbjct: 734 SKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNY 793 Query: 226 LIGGLGDDIYYVDNVNDVIIEKINEGFETVNSTVSYALDSGNALNNLNLLGTDNIDGTGN 285 L GG GDD + V + A N L G GN Sbjct: 794 LNGGDGDDEFQV-------------------------QGNSLAKNVLF-------GGKGN 821 Query: 286 GNGNTIVGNSGNNILSGGTNNDVLNGGAGNDILNGGKD--NDTLI-GGLGSDTALYKLLN 342 + + G+ G ++L GG +D+L GG GNDI + + G D ++ Sbjct: 822 ---DKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADID 878 Query: 343 TNDVT-GGNGADVWKDFKVGNTLTDSEADKIDI 374 DV G D+ GN L+ + I Sbjct: 879 FRDVAFKREGNDLIMYKGEGNVLSIGHKNGITF 911
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 28.7 bits (64), Expect = 0.030 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 18/110 (16%) Query: 175 SSVTPIEWVDSGQTNL--NP-ETNFIIEVIRSASPLKGGALVQIAKPAEGV-PTLSITYH 230 + +T +W ++ + N+ P +F+ EV RS S L G L+ AK +GV I +H Sbjct: 58 TGITSFQWENT-KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAK--DGVQAQTRILFH 114 Query: 231 TPQELTAAINGLINPT--YVQQLDTGSAIFQLQFQHQLGRNLK-KLIRLQ 277 +++ PT ++ ++D +Q + L +++ Q Sbjct: 115 ALRKMGI-------PTIFFINKIDQNGIDLSTVYQ-DIKEKLSAEIVIKQ 156
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 29.1 bits (65), Expect = 0.014 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 26 TSMAAGEYISVKSQEDIEKSDLAIEAKELKKYPQKELDELTQIYIS---RGLSKELAKEV 82 + EY+ + ++ + ++ +L S G+SK L+ E+ Sbjct: 155 SIYPGIEYVYPPKSPKLNP--FDFSYDMIENFTKENSLQLNDNIFSKIFTGVSKTLSSEI 212 Query: 83 AIQLTTHD 90 +L + Sbjct: 213 CFRLKNNS 220
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 41.7 bits (98), Expect = 2e-06 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 140 IPVINENDTVSTDEIRFGDNDTLAAMVAGQVHADLLIILTDQQGMFDSDPRHNPDAKLLS 199 +PVI E+ + E D D +A +V+AD+ +ILTD G + L Sbjct: 197 VPVILEDGEIKGVEAVI-DKDLAGEKLAEEVNADIFMILTDVNGAALY--YGTEKEQWLR 253 Query: 200 TVRAMDDVLFEMAGGGGVLGRGGMVTKVRAA-RLAAKSGCPTLIAS 244 V+ + + G G M KV AA R G +IA Sbjct: 254 EVKVEELRKYYEEGH---FKAGSMGPKVLAAIRFIEWGGERAIIAH 296 Score = 36.7 bits (85), Expect = 1e-04 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 9/91 (9%) Query: 15 KRIVVKIGSSLLTANGQGLDLD----AISHWAKQIADLHNAGHEIILVSSGAVAEGMV-- 68 KR+V+ +G + L GQ + + A+QIA++ G+E+++ G + Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 69 RMKLASRPTDLPS--LQACAAIGQMGLIHTW 97 M +P+ + A+ Q G I Sbjct: 63 HMDAGQATYGIPAQPMDVAGAMSQ-GWIGYM 92
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 91.2 bits (226), Expect = 2e-26 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 10/142 (7%) Query: 2 WYEVARKPAFFQKKCAYNVSATYTLNENGNIVVDNRCYDNQKQL-QQSIGEAFVVNPPYN 60 WYEVAR F++ + V+A Y + +G I V NR Y +K +++ G+A+ VN + Sbjct: 38 WYEVARLDHSFERGLS-QVTAEYRVRNDGGISVLNRGYSEEKGEWKEAEGKAYFVNGSTD 96 Query: 61 TKLKVSFLPEAVRWIPIIRGDYWILKLD-EDYQTVLVGEPSRKYLWVLSRTPHPHKEVVD 119 LKVSF G Y + +LD E+Y V P+ +YLW+LSRTP + ++D Sbjct: 97 GYLKVSFFGP-------FYGSYVVFELDRENYSYAFVSGPNTEYLWLLSRTPTVERGILD 149 Query: 120 EYLNYAKTLGFDIRDIIHTEHK 141 +++ +K GFD +I+ + + Sbjct: 150 KFIEMSKERGFDTNRLIYVQQQ 171
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 66.2 bits (161), Expect = 7e-14 Identities = 49/300 (16%), Positives = 91/300 (30%), Gaps = 16/300 (5%) Query: 6 SQNLPAAPPPP------------TAQQLAAQKQKAEQAQQAKLAEEKRKAEEAAKAKQAA 53 P PP P ++Q + +K EQ A+ + A+EA +A Sbjct: 1020 VDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKAN 1079 Query: 54 EQQRLEEAQKQQAEAKRQAEAK--ARAEAEQKRKAEQNAKAEADAKARQKATEEAKRKAE 111 Q + + + E K A E E+K K E E Q + ++ + + Sbjct: 1080 TQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139 Query: 112 -TEARLKREAQKAENAKLQAQQEAKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQAADN 170 +A RE N K + Q + A+ + AK+ + + +N Sbjct: 1140 QPQAEPARENDPTVNIK-EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198 Query: 171 AKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQKAAEDAKR 230 + A + + + + + E A + + Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTN 1258 Query: 231 KAEADAKAKQQKAAEDARRKAEIEAEEKAASAKKAQEEAAQKKGEAKKIASSAKRDFEQK 290 +DA+AK Q A + + + + + K +SS R F K Sbjct: 1259 AVLSDARAKAQFVALNVGKAVSQHISQLEMNNEGQYNVWVSNTSMNKNYSSSQYRRFSSK 1318 Score = 63.9 bits (155), Expect = 4e-13 Identities = 36/265 (13%), Positives = 92/265 (34%), Gaps = 15/265 (5%) Query: 10 PAAPPPPTAQQLAAQKQKAEQAQQAKLAE----EKRKAEEAAKAKQAAEQQRLEEAQKQQ 65 P Q + + A++ E A + + AE + Q+ + Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSK----QESK 1049 Query: 66 AEAKRQAEAKARAEAEQKRKAEQNAKAEADAKARQKATEEAKRKAETEARLKREAQKAEN 125 K + +A A+ + A++ A+++ KA + E A+ +ET+ + + E Sbjct: 1050 TVEKNEQDAT-ETTAQNREVAKE---AKSNVKANTQTNEVAQSGSETKE--TQTTETKET 1103 Query: 126 AKLQAQQEAKRKAEADAKAKQQKAAEDAKR-KAEADAKAKQQAADNAKRKAEADAKAKQQ 184 A ++ +++AK + E + + + K+ ++E + A +N + +++ Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 185 KAAEDAKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQKAA 244 A+ + E + +Q + + + + +++ K + Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 245 EDARRKAEIEAEEKAASAKKAQEEA 269 + R E S+ A Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 60.8 bits (147), Expect = 4e-12 Identities = 42/308 (13%), Positives = 94/308 (30%), Gaps = 18/308 (5%) Query: 42 KAEEAAKAKQAAEQQRLEEAQKQQAEAKRQAEAKARA------------EAEQKRKAEQN 89 + E+ + Q E AR +E +N Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAEN 1043 Query: 90 AKAEADA--KARQKATEEAKRKAE--TEARLKREAQKAENAKLQAQQEAKRKAEADAKAK 145 +K E+ K Q ATE + E EA+ +A N Q+ E K + K Sbjct: 1044 SKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET 1103 Query: 146 QQKAAED-AKRKAEADAKAKQQAADNAKRKAEADAKAKQ-QKAAEDAKRKAEADAKAKQQ 203 E+ AK + E + + + + ++ +++ Q + A E+ + +++ Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTN 1163 Query: 204 KAAEDAKRKAEADAKAKQQKAAEDAKRKAEADAKAKQQKAAEDARRKAEIEAEEKAASAK 263 A+ + E + +Q + + + + E+ K + Sbjct: 1164 TTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 264 KAQEEAAQKKGEAKKIASSAKRDFEQKIRRAWDVPTGSSGKTVSVRFTLSDSGSVSSIVI 323 + + E +S+ + + + S +F + G S I Sbjct: 1224 RRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAVSQHI 1283 Query: 324 TRSSGDDA 331 ++ ++ Sbjct: 1284 SQLEMNNE 1291
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 108 bits (271), Expect = 6e-31 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 60 VHFDYDSSDLSTEDYQTLQAHAQFL--MANANSKVALTGHTDERGTREYNMALGERRAKA 117 V F+++ + L E L L + + V + G+TD G+ YN L ERRA++ Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 118 VQNYLITSGVNPQQLEAVSYGKEAPV---------NPGHDESAWKENRRVEINYEAV 165 V +YLI+ G+ ++ A G+ PV +RRVEI + + Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGI 337
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.024 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 19/98 (19%) Query: 123 VQVSADTQEFAINASNQRHWEQPVKQYIEEL--------------LAGKTSVREKDFNMR 168 + SA T E AIN + + P + +++ + GKT K +R Sbjct: 512 GEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLR 571 Query: 169 WVAC-----MVGDVHRILCRGGIFLYPYDLKDPKKAGR 201 ++ ++G V R++ G F Y L+ G+ Sbjct: 572 YLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGK 609
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 28.1 bits (62), Expect = 0.011 Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 4 AGFTHGGFYKHFSSKTDLVTITAKYGLEQVLKRIEGL 40 AG T G Y HF K+DL + + + + Sbjct: 41 AGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEY 77
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 61.2 bits (148), Expect = 2e-13 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Query: 12 SKDLQEKYGVQVEFIQADLSNDQDICKIEDVLKNDADIEILVNNAGIALNGNFLTQDRNE 71 S + ++ D + +I + + I+ILVN AG+ G + E Sbjct: 51 SLKAEARHAEAFPADVRDSAAIDEIT--ARIEREMGPIDILVNVAGVLRPGLIHSLSDEE 108 Query: 72 IEKLLTLNMTAVVRLSHAMSQSLIRKGKGAIINLGSVLGLAPEFGSTIYGASKSFIQFFS 131 E ++N T V S ++S+ ++ + G+I+ +GS P Y +SK+ F+ Sbjct: 109 WEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFT 168 Query: 132 QGLHLELKDHGVYVQAVLPSATKTEI 157 + L LEL ++ + V P +T+T++ Sbjct: 169 KCLGLELAEYNIRCNIVSPGSTETDM 194
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 46.2 bits (109), Expect = 1e-08 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 2 KNGLDHTTVLKVCEIAGVGSGSFYEYFKNKEALFVEM---QQHFIAEISKVIYGVIPEIL 58 + G+ T++ ++ + AGV G+ Y +FK+K LF E+ + I E+ P Sbjct: 26 QQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPG-- 83 Query: 59 DLEIPEAIRTIFLKIGEFLAKDNN 82 + +R I + + E + Sbjct: 84 --DPLSVLREILIHVLESTVTEER 105
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.8 bits (134), Expect = 3e-12 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 13/163 (7%) Query: 1 MDKLTAEAGLTRGALYHHFGDKRGLFAAVVDQIDSQMAEYAQQ-HREQPDDLWEGLLLEG 59 + ++ AG+TRGA+Y HF DK LF+ + + +S + E + + P D L Sbjct: 34 LGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREIL 93 Query: 60 QTYIQNALNPE----FQRIVLRDGPAVLGDPAHWPSQNRCLQSTRECVEQLLAAERIK-- 113 +++ + E I+ V +Q + + +EQ L Sbjct: 94 IHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKM 153 Query: 114 ---IVDPEAAAVLLNGAAMNAAL-WVASSEYPEQVLPEALNAF 152 + AA+++ G W+ + + + L + + Sbjct: 154 LPADLMTRRAAIIMRGYISGLMENWLFAPQSFD--LKKEARDY 194
>INTIMIN#Intimin signature. Length = 939 Score = 36.2 bits (83), Expect = 0.002 Identities = 77/341 (22%), Positives = 117/341 (34%), Gaps = 60/341 (17%) Query: 35 ADKTIDAKVTFTDAAGNSSSVNDTHTYTVDTVAPNAPVLDPINATDPVSGQAEPGSTVTV 94 D GNSS + T+ TV N V+D + TD + + + Sbjct: 521 GSNVYKVTARAYDRNGNSS---NNVLLTI-TVLSNGQVVDQVGVTDFTADKTSAKA---- 572 Query: 95 TYPDGTTATVVAGTDGSWSVPNPGNLVDGDTVTATA--------TDPAG------NTSLP 140 DGT A T V V + V+ TA T+ +G + P Sbjct: 573 ---DGTEAITYTATVKKNGVAQANVPVSFNIVSGTAVLSANSANTNGSGKATVTLKSDKP 629 Query: 141 GTGTVSADITAPVVALDD---VLTNDSTPALTGTVNDPTATVVVNVDGVDY-PAVNNGDG 196 G VSA AL+ + + + ++T D T V D + Y V GD Sbjct: 630 GQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDK 689 Query: 197 TWTLADNTLPTL------------ADGPHTITVTATDAA-GNVGNDTAVVTVDTTAPGVS 243 + + T T +G +T+T+T V + V VD AP V Sbjct: 690 PVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVE 749 Query: 244 FTDASTNDTTPA--LTGTIDDPTATVVVTVDGVDYPAV-NNGDGTWTLADNTLPSL---- 296 F T D + + TV + V+ A NG TW A+ + S+ Sbjct: 750 FFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVDASS 809 Query: 297 ------IDGPHTVSVTATDPAGNVSLPATGTVTISSSSILA 331 G T+SV ++D + AT T+ +S I+ Sbjct: 810 GQVTLKEKGTTTISVISSD-----NQTATYTIATPNSLIVP 845
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 30.2 bits (68), Expect = 0.015 Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 130 YKYTVGQPFIYPRNDLNYAENFLHMM 155 Y T G+P PR + + +M Sbjct: 610 YHVTTGEPVCQPRRPNSRIDKVRYMF 635
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 32.9 bits (75), Expect = 9e-04 Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 3 SWRLFCPDYEIKLWNEKSF----DINSHPFTLSAYNQKKYAYVSDYVRAYALHNFGGIYL 58 S + D+++ + + ++ DI + A+ SD +R + L +GG+++ Sbjct: 92 SVKKNSGDFKVIIIDGNNYKEWVDIPDFLIKRWQEGKMLDAWFSDILRLFLLCKYGGLWI 151 Query: 59 DTDVELKENLDIFLQHEAFTGFEGKGSP 86 D V + + + ++ F+ Sbjct: 152 DATVYMFDKVPNYIVESNRFMFQSSFLE 179
>PF06580#Sensor histidine kinase Length = 349 Score = 42.2 bits (99), Expect = 2e-06 Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 24/110 (21%) Query: 298 VIQNLVSNALK--FTDVDGSGKVFIEAKQVGTNVEITVRDTGLGMTEQQMANLFHPRITA 355 ++Q LV N +K + GK+ ++ + V + V +TG + Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNT----------- 307 Query: 356 SFKGTAGEKGAGLGLSLCKRFVEI---NQGKISVTSQKGVGTTFKVLLPS 402 ++ G GL + +++ + +I ++ ++G VL+P Sbjct: 308 -------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIPG 349
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.3 bits (68), Expect = 0.030 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 503 QKIKDLVDKNQDDEY-YSLYFFQTNQYSDAIKYLEKL-YQKHQDSKFSFYLFESYIKVKN 560 + ++ + Y + +Q+ +Y DA K + L H DS+F L + Sbjct: 26 AMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQ 85 Query: 561 FKKAKYLF 568 + A + + Sbjct: 86 YDLAIHSY 93
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 612 bits (1579), Expect = 0.0 Identities = 199/992 (20%), Positives = 405/992 (40%), Gaps = 50/992 (5%) Query: 1 MLSVPGVKTVRGYSF-FGDSFVYVIFDEHTDLYWARSRVLEYLNQIQGKMPANAKS-SLG 58 M + + + S G + + F TD A+ +V L +P + + Sbjct: 69 MNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGIS 128 Query: 59 PDATGVGWVYEYALVDPTGQHDLSQLRSIQDWFLKYELKTLPNVAEVATIGGMVKQYQVV 118 + + ++ V + +K L L V +V G ++ Sbjct: 129 VEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-YAMRIW 187 Query: 119 LDPSKMAALGITQNNVIEAIQKANQETGG------SVLEMAETEYMVRASGYLKTLEDFR 172 LD + +T +VI ++ N + L + + A K E+F Sbjct: 188 LDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFG 247 Query: 173 QIPIKTNSFGIPVTLGDVATIQLGPEMRRGITELNGQGETVGGVVILRAGKNARETITAV 232 ++ ++ NS G V L DVA ++LG E I +NG+ G + L G NA +T A+ Sbjct: 248 KVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK-PAAGLGIKLATGANALDTAKAI 306 Query: 233 KAKLAELQQSLPKGVQVVPVYDRSKLIDRAVENLSHKLIEEFIVVALVCGLFLWHLRSAM 292 KAKLAELQ P+G++V+ YD + + ++ + L E ++V LV LFL ++R+ + Sbjct: 307 KAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATL 366 Query: 293 VAIVSLPLGILSAFLVMYYQGLNANIMSLGGIAIAIGAMVDAAVVMVENAHKHIETWQHE 352 + +++P+ +L F ++ G + N +++ G+ +AIG +VD A+V+VEN + + Sbjct: 367 IPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMME---- 422 Query: 353 HPNQVLETQARWNIIAHSASEVGPALFFCLLIITLSFIPIFTLQAQEGRLFSPLAFTKTY 412 + S S++ AL ++++ FIP+ G ++ + T Sbjct: 423 ------DKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVS 476 Query: 413 AMAAAAGLSITLIPVLMGYWIRGKLPSEQRNP------LNR---FLIKIYRPMLDQVLTH 463 AMA + +++ L P L ++ N N + Y + ++L Sbjct: 477 AMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGS 536 Query: 464 PKTTLFGALLIFLISLFPLTRLGGEFLPNMDEGDLLYMPSALPGLSAAKASELLQQTDR- 522 L LI + RL FLP D+G L M G + + ++L Q Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 523 -MIKTVPEVATVFGKAGRAESATDPAPLEMFETTIQFKPRSEW-RSGMTPDKLIKELDKA 580 + V +VF G + S F + KP E + + +I Sbjct: 597 YLKNEKANVESVFTVNGFSFSGQAQNAGMAF---VSLKPWEERNGDENSAEAVIHRAKME 653 Query: 581 VQVPGLTNIWVPPIRNRIDMLATGVKSPIGIKISANDLQDIDRVAQQIEQVAKQVPG-VS 639 + + + +++ I + + + Q+ +A Q P + Sbjct: 654 LGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLV 713 Query: 640 SALAERLTGGRYVDVDINRMQAARYGLNINDVQQIVSSAIGGENIGETVEALARFPINVR 699 S L +++++ +A G++++D+ Q +S+A+GG + + ++ + V+ Sbjct: 714 SVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQ 773 Query: 700 YPREIRNSLEALRNLPIVTESGQQIVLSSVANIQITDGPPMLKSENARPSGWVYVDVQGR 759 + R E + L + + +G+ + S+ G P L+ N PS + + Sbjct: 774 ADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPG 833 Query: 760 DLASVVQDLKQSIDQKVKRSSAMSISYSGQFEFMERANARLKVVIPITLMIIFLLLYLIF 819 + L +++ K+ + ++G + + ++ I+ +++FL L ++ Sbjct: 834 TSSGDAMALMENLASKLPAG--IGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALY 891 Query: 820 RQVQDAVLIMATLPFALIGGIWAMYLSGFHFSVAIAVGFIALAGVAAEFGVVMLFYLKQA 879 V +M +P ++G + A L V VG + G++A+ ++++ + K Sbjct: 892 ESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDL 951 Query: 880 VEHAQQNLSSSTAPLTEQQLNEAIRTGAVLRVRPKAMTVAVILAGLIPILLGTGTGSELM 939 +E ++ + EA +R+RP MT + G++P+ + G GS Sbjct: 952 ME--KEGKG----------VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 940 SRIALPMVGGMISAPLLSMFVIPAAYQLLIKR 971 + + + ++GGM+SA LL++F +P + ++ + Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 79.1 bits (195), Expect = 5e-17 Identities = 91/551 (16%), Positives = 204/551 (37%), Gaps = 77/551 (13%) Query: 456 MLDQVLTHPKTTLFGALLIFLISLFPLTRLGGEFLPNMDEGDLLYMP-----SALPGLSA 510 M + + P A+++ + + +L P + P + PG A Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIA------PPAVSVSANYPGADA 54 Query: 511 AK-ASELLQQTDRMIKTVPEVATVFGKAGRAESATDPAPLEMFETTIQFKPRSEWRSGMT 569 + Q ++ + + + + + A S T T+ F+ G Sbjct: 55 QTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVT---------ITLTFQS------GTD 99 Query: 570 PDKLIKE-----------LDKAVQVPGLTNIWVPPIRNRIDMLATGVKSPIGIKISANDL 618 PD + L + VQ G++ ++ G S + +D+ Sbjct: 100 PDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSY----LMVAGFVSDNP-GTTQDDI 154 Query: 619 QDIDRVAQQIEQVAKQVPGVSSALAERLTGGRY---VDVDINRMQAARYGLNINDVQQIV 675 D VA ++ ++ GV +L G +Y + +D + + +Y L DV + Sbjct: 155 SDY--VASNVKDTLSRLNGVGDV---QLFGAQYAMRIWLDADLL--NKYKLTPVDVINQL 207 Query: 676 SSA---IGGENIGETVEALARFPINVRYPREIR-NSLEALRNLPI-VTESGQQIVLSSVA 730 I +G T AL +N + R + E + + V G + L VA Sbjct: 208 KVQNDQIAAGQLGGT-PALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVA 266 Query: 731 NIQI-TDGPPMLKSENARPS-GWVYVDVQGRDLASVVQDLKQSI-DQKVKRSSAMSISY- 786 +++ + ++ N +P+ G G + + +K + + + M + Y Sbjct: 267 RVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYP 326 Query: 787 SGQFEFMERANARLKVVIPITLMIIFLLLYLIFRQVQDAVLIMATLPFALIGGIWAMYLS 846 F++ + + + +M++FL++YL + ++ ++ +P L+G + Sbjct: 327 YDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAF 386 Query: 847 GFHFSVAIAVGFIALA-GVAAEFGVVMLFYLKQAVEHAQQNLSSSTAPLTEQQLNEAIRT 905 G+ + + + + LA G+ + +V++ + VE TE+ +++ Sbjct: 387 GYSINT-LTMFGMVLAIGLLVDDAIVVV----ENVERVMMEDKLPPKEATEKSMSQI--Q 439 Query: 906 GAVLRVRPKAMTVAVILAGLIPILLGTGTGSELMSRIALPMVGGMISAPLLSMFVIPAAY 965 GA++ V+ A IP+ G+ + + ++ +V M + L+++ + PA Sbjct: 440 GALV------GIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 Query: 966 QLLIKRKLSTH 976 L+K + H Sbjct: 494 ATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 1e-08 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 32/161 (19%) Query: 152 HQVERTRRVQSNITLQAPISGFIDSLEVR-NGMALAMGQTLATIKGIN-PIWLEAAVPEK 209 ++ + Q ++AP+S + L+V G + +TL I + + + A V K Sbjct: 316 LELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNK 375 Query: 210 QIAGIKRGMSVEANFAAFSQ----KVTGKVIDILPTLDTTSRT---IKVRIELPNPSG-- 260 I I G + AF + GKV +I R V I + Sbjct: 376 DIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLST 435 Query: 261 -----QLKPGMFASVNIINNPQSSLVVPEQAVIRTGTRNVV 296 L GM A I+TG R+V+ Sbjct: 436 GNKNIPLSSGM----------------AVTAEIKTGMRSVI 460
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.4 bits (105), Expect = 7e-08 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 2 LPKLDGWNIINDIRKSGKSMPILFLSARDQIDDRVKGLELGADDYLVKPF---AFAELLA 58 +P + ++++ I+K+ +P+L +SA++ +K E GA DYL KPF ++ Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116 Query: 59 RIKSLLRRGQQKEDSNLITIADL 81 R + +R K + + L Sbjct: 117 RALAEPKRRPSKLEDDSQDGMPL 139
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.032 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 18/73 (24%) Query: 31 AIRQKPTDIELVEDI------------RLPLQSGTIFARHYHPA------PNKKLPLIVF 72 IR L+EDI L +A+ H + + F Sbjct: 81 KIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHF 140 Query: 73 YHGGGFVVGGLDT 85 Y F++G +DT Sbjct: 141 YAKHHFIIGAVDT 153
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.0 bits (72), Expect = 8e-04 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%) Query: 90 EMAPPAAPTDAVPPAPNQAAPAPQDPST----PPPAANPNQSADPMAKDGA-LPA 139 E+A A + P+ A P + P PNQ+ PM + LP+ Sbjct: 454 ELAKLRAGKASDSQTPD-AKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPS 507
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 52.6 bits (126), Expect = 1e-09 Identities = 71/362 (19%), Positives = 131/362 (36%), Gaps = 48/362 (13%) Query: 55 LPAFSQSFQISPASSSLALSLTTAFLAISIVLSSAFSQAIGRRGVIFTSMLCAAILNIVS 114 LP + F PAS++ + +I + S +G + ++ ++ +++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 115 MFTPNWHSLLI-ARALEGLLLGGVPAVTMAWIAEEIAPEHLGKTMGLYIAGTAFGGMMGR 173 ++ SLLI AR ++G PA+ M +A I E+ GK GL + A G +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 174 VGMGILVEYFSW---------------------------RTALGLLGAICFICSIAFLKL 206 G++ Y W + + G I I F L Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 207 LPVSRN--FVQKKGLNLGFHMQMWRAH---------LSNTKLLRLFAIGFLLTSV---FV 252 S + F+ L+ ++ R N + G ++ FV Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 253 TLFNYATFRLSGAPYSLSQTQISLIFLSYSFGMVSSSLAGSLADRFGKKTMMMSGFALMI 312 ++ Y + S ++ +IF ++ + G L DR G ++ G + Sbjct: 277 SMVPYMMKDVHQ--LSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS 334 Query: 313 VGSL---MTLLSSLFGIIIGIAFITTGFFITHSLTSSSVGAESKQAKAHAS-SLYLLFYY 368 V L L ++ + + I I F+ G T ++ S+ V + KQ +A A SL + Sbjct: 335 VSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394 Query: 369 MG 370 + Sbjct: 395 LS 396
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 40.8 bits (95), Expect = 1e-06 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 24/161 (14%) Query: 7 RLDKDNAAVLLVDHQAGLLSLVRDIDP--DKFKNNVLAVANAAKYFNLPTILTTSFET-- 62 D + A +L+ D Q + + N+ + N +P + T + Sbjct: 25 VPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQN 84 Query: 63 -----------GPNGPLVPELKEIHPDAPFIPRPGQI-------NAWDNEDFVKAVKATG 104 GP P ++I P + +A+ + ++ ++ G Sbjct: 85 PDDRALLTDFWGPGLNSGPYEEKI--ITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEG 142 Query: 105 KKQLIIAGVVTEVCVAFPALSALAEGFEVFVITDASGTFNE 145 + QLII G+ + A A E + F + DA F+ Sbjct: 143 RDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSL 183
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.011 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 330 RSAEIACVAVHPSYRKSNRGSQILQFLEEKAKQQGIRQLFVLTTR----TAHWFLEHGFH 385 A I +AV YRK G+ +L E AK+ L + T H++ +H F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 386 QVSVD-----DLPNAR-QALYNYQR 404 +VD + P A A++ Y + Sbjct: 148 IGAVDTMLYSNFPTANEIAIFWYYK 172
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.4 bits (164), Expect = 7e-16 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 5/156 (3%) Query: 17 EGLGAPQPAILPLQLSSASDRDYDFLVSTLEKQFGRLDGILHNAGILGERVELAH-YPAE 75 A P + ++ D + + +E++ G +D +++ AG+L R L H E Sbjct: 52 LKAEARHAEAFPADVRDSAA--IDEITARIEREMGPIDILVNVAGVL--RPGLIHSLSDE 107 Query: 76 VWDDVMAVNLRAPFALTQALLPLLQKSENASVVFTSSGVGREARALWGAYSVSKVAIEAV 135 W+ +VN F ++++ + + S+V S R AY+ SK A Sbjct: 108 EWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMF 167 Query: 136 SKIFAAEHTYPNIRFNCINPGATRTAMRAKAYPEED 171 +K E NIR N ++PG+T T M+ + +E+ Sbjct: 168 TKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADEN 203
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 29.0 bits (65), Expect = 0.010 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%) Query: 43 EPHMQTWLKQIPSDVRFVRTPAAMNKVWEQGARTYYTSEALGVRKRTHL 91 E + +P D R TPA+M R TS+ L R + L Sbjct: 162 ETELNEA---LPGDARDTTTPASMAATL----RKLLTSQRLSARSQRQL 203
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 38.1 bits (88), Expect = 8e-06 Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 2 AELDIAKGTLYKHFRSKNELLLELIIQNEKQILEISQ 38 + +G +Y HF+ K++L E+ +E I E+ Sbjct: 39 KAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75
>PF07328#T-DNA border endonuclease VirD1 Length = 144 Score = 28.9 bits (64), Expect = 0.011 Identities = 9/45 (20%), Positives = 16/45 (35%) Query: 27 VNALISAYDNTVQVTWLKQEGDRVAANEAFLKLAGSARSLLTVER 71 +N + A + T + +R KL+ L+ V R Sbjct: 85 INQIAKAANRTHDPAYHSFMAERKVLGLELSKLSAVLAPLMEVSR 129
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.7 bits (72), Expect = 0.007 Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 48/212 (22%) Query: 121 IPPKVDFKHEGVERILKL---MLPALFGVSVTQINLLLNTIWASFMQDGSVSWLYSAERM 177 +P + + G+ +L PAL +S + L L ++ S+ SV M Sbjct: 850 LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV--------M 901 Query: 178 TELPLGLIGVAIGTVILPSLSARHAEQDQAKFRSMIDWAAKV--IVLVGLPASIALFMLS 235 +PLG++GV + + F D V + +GL A A+ ++ Sbjct: 902 LVVPLGIVGVLLAATL---------------FNQKNDVYFMVGLLTTIGLSAKNAILIVE 946 Query: 236 ----------TPIIQALFQRGEFDLRDTQMTALALQCMSAGVISFMLIKVFAPGFYAQQD 285 +++A LR MT+LA GV+ + G AQ Sbjct: 947 FAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLA---FILGVLPLAIS--NGAGSGAQNA 1001 Query: 286 TKTPVRVGLMSVAANAI-----LNVVFIGFFK 312 V G++S AI VV FK Sbjct: 1002 VGIGVMGGMVSATLLAIFFVPVFFVVIRRCFK 1033
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 162 bits (412), Expect = 9e-53 Identities = 81/188 (43%), Positives = 112/188 (59%) Query: 1 MGRNNTDALTDLNLDIFYQGLQEGAQNKTARLTDEEMAKAINDYKKTLEAKQLVEFQKQG 60 +G+N + D+N D+ +G+Q+G LT+E+M ++ ++K L AK+ EF K+ Sbjct: 42 LGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEEQMKDVLSKFQKDLMAKRSAEFNKKA 101 Query: 61 QQNAQAGAAFLAENAKKSGVITTKSGLQYQVLKEGTGKTPKATSRVKVNYEGRLLDGTVF 120 ++N G AFL+ N K G++ SGLQY+++ GTG P + V V Y G L+DGTVF Sbjct: 102 EENKAKGDAFLSANKSKPGIVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVF 161 Query: 121 DSSIARNHPVDFQLNQVIAGWTEGLQTMKEGGKTRFFIPAKLAYGEVGAGDSIGPNSTLI 180 DS+ P FQ++QVI GWTE LQ M G F+PA LAYG G IGPN TLI Sbjct: 162 DSTEKAGKPATFQVSQVIPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLI 221 Query: 181 FDIELLQV 188 F I L+ V Sbjct: 222 FKIHLISV 229
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 145 bits (368), Expect = 2e-45 Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 10/218 (4%) Query: 33 TTEVGRKADKNASPIQKISYVLGYEVAQQTPP---ELDTKAFVQGIHDARNKQPSAYTQE 89 T A + K+SY +G ++ + +++ +G+ D + T+E Sbjct: 17 TAMAATDATSLTTDKDKLSYSIGADLGKNFKNQGIDINPDVLAKGMQDGMSGAQLILTEE 76 Query: 90 DLKAAVAAYEKELQQK--MQHQDKPEQAGTAADSADAQFLAENKTKAGVKTTASGLQYII 147 +K ++ ++K+L K + K E+ D+ FL+ NK+K G+ SGLQY I Sbjct: 77 QMKDVLSKFQKDLMAKRSAEFNKKAEENKAKGDA----FLSANKSKPGIVVLPSGLQYKI 132 Query: 148 TKEGTGKQPTAQSIVKVHYEGRLINGQVFDSSYKRGQPVEFPLNQVIPGWTEGLQLMKEG 207 GTG +P V V Y G LI+G VFDS+ K G+P F ++QVIPGWTE LQLM G Sbjct: 133 IDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVSQVIPGWTEALQLMPAG 192 Query: 208 GKATFFIPSNLAYGPQELPG-IPANSTLIFDVELISVK 244 F+P++LAYGP+ + G I N TLIF + LISVK Sbjct: 193 STWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISVK 230
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 33.3 bits (76), Expect = 0.003 Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 23/153 (15%) Query: 172 QGQDKEHITKVLNAILATYSAQ------NIERRSAESA----------QTLKFLDEQLPD 215 ++ +T ++ +T+ Q N++++ AE + +L D Sbjct: 180 SEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDD 239 Query: 216 LKKQLDDAERQFNKFRQQYNT-VDVTKESELYLTQSITLETKKAELEQKQAEMAAKYTAE 274 L + +Q N V+ E +Y +Q +E++ +++ + + Sbjct: 240 FSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFK-- 297 Query: 275 HPAMREINGQLAAINKQIGELNSTLKQLPDVQR 307 EI +L IG L L + + Q+ Sbjct: 298 ----NEILDKLRQTTDNIGLLTLELAKNEERQQ 326
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 143 bits (362), Expect = 3e-43 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 15/174 (8%) Query: 3 LILPPLRERGEDVLLLANHFIQKICMEWETPSKQLTEAAKTYLLQQHFPGNVRELRNMIE 62 L LPPLR+R ED+ L HF+Q+ E K+ + A + +PGNVREL N++ Sbjct: 305 LRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELENLVR 363 Query: 63 RAITLSEDATIDISHLHPAPLRANISNPFVSATQNIQTTVAAPQVVKK------------ 110 R L I + LR+ I + + +++ Q V++ Sbjct: 364 RLTALYPQDVITREII-ENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDA 422 Query: 111 -LPSEGLERYLENIEKDILINALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLD 163 PS +R L +E +++ AL T N+ AA LG+ +LR ++++ G+ Sbjct: 423 LPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.4 bits (214), Expect = 5e-24 Identities = 25/51 (49%), Positives = 35/51 (68%) Query: 1 MFGHKKGSFTGATQDKQGLILSAHGGSLFLDEIAELPLSMQVKLLRAVQEK 51 +FGH+KG+FTGA G A GG+LFLDEI ++P+ Q +LLR +Q+ Sbjct: 208 LFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQG 258
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 112 bits (281), Expect = 4e-32 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 1/137 (0%) Query: 1 MQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI 60 + L+R G + + D +TD+ +PD + DL+ + + P+ P+ Sbjct: 19 LNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPV 78 Query: 61 AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDAAE-NALENKL 119 V++A AI A + GA+D++ KP + L ++ +AL K E ++ + Sbjct: 79 LVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMP 138 Query: 120 LIGRSLPIQQLRIAIKK 136 L+GRS +Q++ + + Sbjct: 139 LVGRSAAMQEIYRVLAR 155
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.2 bits (151), Expect = 9e-14 Identities = 15/88 (17%), Positives = 32/88 (36%) Query: 14 AESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIAVSGLAEEPYPSL 73 + + +V+ DV MP + R+ + P+ V+ +S Sbjct: 33 TSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIK 92 Query: 74 LLKAGAKGYITKGAPIAEMVRAINKVMQ 101 + GA Y+ K + E++ I + + Sbjct: 93 ASEKGAYDYLPKPFDLTELIGIIGRALA 120
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 48.8 bits (116), Expect = 4e-09 Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 30/231 (12%) Query: 11 QQPQIPNIST-FSLFNEP----------SANAAQESVNLELQGVMVGYPNRFSSAVIKID 59 QQP N T F + E +N ++NL L GVM G + S A+I D Sbjct: 57 QQPVTLNDFTLFGVSPEKNKAGALDASQMSNLPPSTLNLSLTGVMAGDDDSRSIAIISKD 116 Query: 60 NTAERYRVGETIGSTSYQLAEVYWDHVVLSQGNGSTRELQFKGLPNGLYQPMTPDASQQS 119 N V E + + ++ + D VVL G Y+ + + + S Sbjct: 117 NEQFSRGVNEEVPGYNAKIVSIRPDRVVLQY--------------QGRYEVLGLYSQEDS 162 Query: 120 ATPSQPTEPMNTAQQALGQAIQQMQGNREQYLRDMGVSGNSGEGYEVTERTPTALRNKLG 179 + P +N Q + + D N +GY + + ++G Sbjct: 163 GSDGVPGAQVNEQLQQRASTTMSDYVSFSPIMND-----NKLQGYRLNPGPKSDSFYRVG 217 Query: 180 LRPGDRIVSLNGQTIGQGQTDVQLLEQARRAGQVKIEIKRGDQVMTIQQNF 230 L+ D V+LNG + + + +E+ + ++R Q I F Sbjct: 218 LQDNDMAVALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYMEF 268
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 356 bits (915), Expect = e-116 Identities = 198/608 (32%), Positives = 301/608 (49%), Gaps = 71/608 (11%) Query: 6 SGNTIKLVPDSNVKNSGIPYDSR-NRVRGDQIVTRVIWLENTNPNDLIPALRPLMPQFAH 64 + +K+V + K + +P S GD++VTRV+ L N DL P LR L Sbjct: 96 NNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVVPLTNVAARDLAPLLRQLNDNAGV 155 Query: 65 MAAI--AGTNALIISDRAANIYQLENIIRNLDGTGQNDIEAITLQSSQAEEIITQLEAMS 122 + + +N L+++ RAA I +L I+ +D G + + L + A +++ + ++ Sbjct: 156 GSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVPLSWASAADVVKLVTELN 215 Query: 123 ATGASKDFSGARI-RIIADNRTNRILIKGDPQTRKRIRHMIEMLDVPSADRLGGLKVFRL 181 + G+ + ++AD RTN +L+ G+P +R+RI MI+ LD A G KV L Sbjct: 216 KDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQA-TQGNTKVIYL 274 Query: 182 KYASAKNLSEILQGLVTGQAVSSSNNSNNSSNSSNPINSLIGNNQNSGSNTSGSNGASIS 241 KYA A +L E+L G +SS+ S + Sbjct: 275 KYAKASDLVEVLTG------ISSTMQSEKQAAKPVAAL---------------------- 306 Query: 242 TPAINLNGNSNSSNQNNITSFNQNGVSIIADNAQNSLVVKADPQLMREIESAIQQLDVRR 301 + I A N+L+V A P +M ++E I QLD+RR Sbjct: 307 ----------------------DKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 344 Query: 302 QQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSIAAGYLSGGSAGA 361 QVL+EA I EV D LGIQWA + G+ F+N G +S+ AG G Sbjct: 345 PQVLVEAIIAEVQDADGLNLGIQWA----NKNAGMTQFTNSGLPISTAIAGANQYNKDGT 400 Query: 362 -ASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPSIVTMDNEEAYI 420 +S++A+ + NG G + + L+ AL ++TK+++L+TPSIVT+DN EA Sbjct: 401 VSSSLASALSSFNGIAAGFYQGN-----WAMLLTALSSSTKNDILATPSIVTLDNMEATF 455 Query: 421 VVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRLEVEQEVSAVQD 480 VGQ VP +TGS TT+ N + TVERK VG+ LKV P I EG +V LE+EQEVS+V D Sbjct: 456 NVGQEVPVLTGSQTTSGD--NIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVAD 513 Query: 481 SRGQAA---DLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSSIPYVGRLF 537 + + + R + AVL G+TVV+GGL+ S + +P L IP +G LF Sbjct: 514 AASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALF 573 Query: 538 RSDNRSNVKRNLLVFIHPTIVGDANDVRRLSQQRYNQLYSLQL-AMDKNGNFAKLPEQVD 596 RS ++ KRNL++FI PT++ D ++ R+ S +Y Q K N A L + + Sbjct: 574 RSTSKKVSKRNLMLFIRPTVIRDRDEYRQASSGQYTAFNDAQSKQRGKENNDAMLNQDLL 633 Query: 597 DIYNQKMT 604 +IY ++ T Sbjct: 634 EIYPRQDT 641
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 78.0 bits (192), Expect = 1e-17 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 13 VNVGTIGHVDHGKTTLTAAI--ATICAKTYGGEAKDYSQIDSAPEEKARGITINTSHVEY 70 +N+G + HVD GKTTLT ++ + G K ++ D+ E+ RGITI T + Sbjct: 4 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF 63 Query: 71 DSPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPMPQTREHILLSRQVGVPY 130 +D PGH D++ + + +DGAIL+ +A DG QTR R++G+P Sbjct: 64 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP- 122 Query: 131 IIVFLNKCDLVDDEELLELVEMEVRELLS 159 I F+NK D + L V +++E LS Sbjct: 123 TIFFINKIDQNGID--LSTVYQDIKEKLS 149
>SECETRNLCASE#Bacterial translocase SecE signature. Length = 127 Score = 75.3 bits (185), Expect = 2e-20 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 5/126 (3%) Query: 21 SAEVVRSGSPLDIVLWVIAIALLLSATMVNQHLPAYWAPANDVWVRVGVIFACIVVALGL 80 + E SG L+ + WV+ +ALLL A + N P +R + I A G+ Sbjct: 4 NTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLP-----LRALAVVILIAAAGGV 58 Query: 81 LYATHQGKGFVRLLKDARVELRRVTWPTKQETVTTSWQVLLVVVVASLVLWCFDYGLGWL 140 T +GK V ++AR E+R+V WPT+QET+ T+ V V V SL+LW D L L Sbjct: 59 ALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRL 118 Query: 141 IKLIIG 146 + I G Sbjct: 119 VSFITG 124
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.5 bits (76), Expect = 0.003 Identities = 43/239 (17%), Positives = 91/239 (38%), Gaps = 5/239 (2%) Query: 159 AEANDVREAYSTWQRNIRQHQAALDAQATRLQRIATLELQIEELEEIIQTDYKEIEQEFD 218 A A + + + A T A LE + ELE+ ++ + Sbjct: 222 ALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSA 281 Query: 219 RLSHHEHIMQDCSYSLNALDEAEQNITQEMSSIIRRLESHAGRSEQLSEIYNSLLNAQSE 278 ++ E L+ Q + S+ R L++ +QL + L Sbjct: 282 KIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKI 341 Query: 279 IDDATSNLRQFIDRQSFDPERMEELNSKLEVFHRLARKYRT----QPETLKEEYETWQSE 334 + + +LR+ +D +++E + KLE ++++ R + +E + + Sbjct: 342 SEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQVEKA 401 Query: 335 LEQLH-QLEDPETLAEQVEKSHQEFLEKAQHLDNIRREAAAPLAKQLTEQVKPLALPEA 392 LE+ + +L E L +++E+S + ++ L A L ++L +Q + LA A Sbjct: 402 LEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRA 460
>INVEPROTEIN#Salmonella/Shigella invasion protein E (InvE) signature. Length = 372 Score = 33.9 bits (77), Expect = 4e-04 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%) Query: 7 LKGRDDQRLQKILQLAEPFGISVQK-ASRDSLEKLAGL-PFHQGVVAAVRPHPTLNEKDL 64 L+ + ++IL+L ISV A D L + L P +V +R L KDL Sbjct: 86 LEDEALPKAKQILKL-----ISVHGGALEDFLRQARSLFPDPSDLVLVLRE--LLRRKDL 138 Query: 65 DQLLAETPDALLLALDQVTDPHNLGACIRTA 95 ++++ + ++LL +++ TDP L A I A Sbjct: 139 EEIVRKKLESLLKHVEEQTDPKTLKAGINCA 169
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 283 bits (725), Expect = 2e-98 Identities = 131/247 (53%), Positives = 166/247 (67%), Gaps = 2/247 (0%) Query: 1 MMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQPIRWYQNIPVISWLVLRGKC 60 M+E++WQ E + NP+ +D L P S CP C PI +NIP++SWL LRG+C Sbjct: 40 MLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPHCNHPITALENIPLLSWLWLRGRC 99 Query: 61 GHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPD 120 CQ PIS RYP +ELLT L S+ V M P L L+LTWVL+ALTFID D LLPD Sbjct: 100 RGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPD 159 Query: 121 RFTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLL 180 + TL L GL N + S A+ G + G+L LW +Y+ FK++TGKEGMGYGDFKLL Sbjct: 160 QLTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLL 219 Query: 181 AALGAWMGPLMLPLIVLLSSLLGAIIGIILLKLRNDN--QPFAFGPYIAIAGWVAFLWGD 238 AALGAW+G LP+++LLSSL+GA +GI L+ LRN + +P FGPY+AIAGW+A LWGD Sbjct: 220 AALGAWLGWQALPIVLLLSSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGD 279 Query: 239 QIMKIYL 245 I + YL Sbjct: 280 SITRWYL 286
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 376 bits (968), Expect = e-131 Identities = 112/382 (29%), Positives = 206/382 (53%), Gaps = 12/382 (3%) Query: 4 AKVTLRKQGVTVRNIREKRKNILEG-------LFKKKVTTLDITIFTRQLATMMKAGVPL 56 A+ LR++G+ ++ E R + + K +++T D+ + TRQLAT++ A +PL Sbjct: 28 ARQLLRERGLVPLSVDENRGDQQKSGSTGLSLRRKIRLSTSDLALLTRQLATLVAASMPL 87 Query: 57 VQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGA 116 + + VA+ E P + +++ ++ +V G + A A++ +P F+ L+C++V +GE SG Sbjct: 88 EEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSLADAMKCFPGSFERLYCAMVAAGETSGH 147 Query: 117 LETMLDRVAIYKEKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGA 176 L+ +L+R+A Y E+ + ++ +I++AM YP + VVAI V IL+ VVP + F Sbjct: 148 LDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVSILLSVVVPKVVEQFIHMKQ 207 Query: 177 DLPAFTQMVVNMSKWMQEY--WFIMIIAIGAVIAAFLEAKKRSKKFRDGLDKLALKLPIF 234 LP T++++ MS ++ + W ++ + G + + R +K R + L LP+ Sbjct: 208 ALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVM---LRQEKRRVSFHRRLLHLPLI 264 Query: 235 GDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVATGQQLQ 294 G + ARY+RTL+ A+ VPL+ A+ + +N + + V G L Sbjct: 265 GRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARHRLSLATDAVREGVSLH 324 Query: 295 FAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAIL 354 A+ + FP M M+A GE SG LDSML++ A + E + + + EPL++ + Sbjct: 325 KALEQTALFPPMMRHMIASGERSGELDSMLERAADNQDREFSSQMTLALGLFEPLLVVSM 384 Query: 355 GVLVGGLVIAMYLPIFQMGSVV 376 +V +V+A+ PI Q+ +++ Sbjct: 385 AAVVLFIVLAILQPILQLNTLM 406
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 95.4 bits (237), Expect = 4e-29 Identities = 45/98 (45%), Positives = 66/98 (67%) Query: 1 MHSFVLVVHIILAVLMIALILVQHGKGADAGASFGGGGAATVFGASGSGNFLTRVTAILT 60 M+ +LVV +I+A+ ++ LI++Q GKGAD GASFG G +AT+FG+SGSGNF+TR+TA+L Sbjct: 1 MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLA 60 Query: 61 ALFFVTSLTLAVFAKKQTTEAYSLKTVQTTAPAQTTSP 98 LFF+ SL L +T + + + A + T P Sbjct: 61 TLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQP 98
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 29.9 bits (67), Expect = 0.023 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 23/145 (15%) Query: 109 IALNLPESTQYTPTENTSTVAETTSNEH----NLNISTGTA-----PALNSSSPAPVAPF 159 I NL + + +NT+ TT+NE + ++T A LNS+ +AP Sbjct: 25 IVGNLVTANADSNKQNTANTETTTTNEQPKPESSELTTEKAGQKMDDMLNSNDMIKLAP- 83 Query: 160 TEKPSTQTLQPTIATMNTESSAVEKQPSTSLKSSDGNQTTTVKKAAQSKTAQQKNVLSKN 219 M ES+ E++ S K S+ + T + S + VL+KN Sbjct: 84 -------------KEMPLESAEKEEKKSEDNKKSEEDHTEEINDKIYSLNYNELEVLAKN 130 Query: 220 TPKKQKISAYKGPAPTGKYVVQRNE 244 + +G K++V + Sbjct: 131 GETIENFVPKEGVKKADKFIVIERK 155
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 29.1 bits (65), Expect = 0.028 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 288 LDEIEDMIRNSNQWAKVVPNTREASM-----TDLTPVAVT-GTLTVPVGR 331 + EIE++ ++ AKVV N R ++ ++ VAV+ GTLTV V Sbjct: 247 MAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTE 296
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 29.2 bits (65), Expect = 0.026 Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 286 EQTQADEEEAQAAIQEGIAKAEKEEKIVTDEIAQPYKE 323 +Q Q +++AQA QE +A A +D+IAQ YK+ Sbjct: 343 QQGQGQQQQAQATAQEAVAAAAVRLLNGSDQIAQLYKD 380
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 31.9 bits (72), Expect = 0.004 Identities = 7/41 (17%), Positives = 18/41 (43%) Query: 240 AYGAPKAISSFVIPTGYSFNLDGSTLYQSIAAIFIAQLYGI 280 + A ++ + TGY + +T+++S I + + Sbjct: 186 SNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAM 226
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 46.0 bits (109), Expect = 1e-07 Identities = 61/386 (15%), Positives = 121/386 (31%), Gaps = 29/386 (7%) Query: 2 VVDGIDIMLLSYSLTSLKAEFGLTTFQAGALGSA----SLAGMGIGGILGGWACDKFGRV 57 +D + I L+ L L + + G +L +LG + D+FGR Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS-DRFGRR 73 Query: 58 RTIANSVTFFSVATCLLGFTQSFEQFMALRFIGALGIGALYMACNTLMAEYVPTTYRTTV 117 + S+ +V ++ R + + GA +A+ R Sbjct: 74 PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARH 132 Query: 118 LGTLQTGQTVGYIAATLLAGAIIPDHGWRVLFFLTVVPAFVNIFLQRFVPEPKSWQLTKI 177 G + G +A +L G + F + + +PE Sbjct: 133 FGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESH------- 185 Query: 178 ESLQGNRQPKERVVAEKPKSSSIYKQIFNNFKHRKMFLLWMTTAFFLQ-FGYYGINNWMP 236 +G R+P R A P +S + + + M F +Q G W+ Sbjct: 186 ---KGERRP-LRREALNPLASFRWARGM------TVVAALMAVFFIMQLVGQVPAALWV- 234 Query: 237 SYLETEVHMNFKNLT-SYMVGSYTAMILGKILAGYLADKFNRRAVFVFGTIASAVFLPII 295 + E H + + S + ++ G +A + R + G IA ++ Sbjct: 235 IFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL 294 Query: 296 IFFNTPDNILYLLITFGFLYGIPYGVNATYMAESFSTDVRGTAIGGAYNIGRVGAAIAPA 355 F +++ GI ++ + +G G + + + + P Sbjct: 295 AFATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353 Query: 356 TIGFL--ASGGTFTMAFIVMGAAYFV 379 + AS T+ + GAA ++ Sbjct: 354 LFTAIYAASITTWNGWAWIAGAALYL 379
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.6 bits (64), Expect = 0.046 Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 248 RNELIPLLSEHFLRKTAKE 266 R E IP L HF+++ KE Sbjct: 313 RAEDIPDLVRHFVQQAEKE 331
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.6 bits (69), Expect = 0.011 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 317 DRGFIFLLLIVSASGLVLMAFRNTPYMALLLIFHLATVMTFFITMP 362 +R + L +I +G +L+AF +MA ++ LA + I MP Sbjct: 276 ERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA---SGGIGMP 318
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.3 bits (84), Expect = 2e-04 Identities = 66/356 (18%), Positives = 128/356 (35%), Gaps = 46/356 (12%) Query: 12 LMRPLGAIFLGAYVDKVGRRKGLIVTLSLMAIGTILITFVPGYETIGIIAPILVVIGRLL 71 LM+ A LGA D+ GRR L+V+L+ A+ ++ P ++ IGR++ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIV 105 Query: 72 QGFSAGVESGGVSIYLAEIATDKNRGFITSWQSGSQQIAVVFAALLGYWLNTILTHAQVG 131 G + G Y+A+I R + S +V +LG + G Sbjct: 106 AGIT-GATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM---------G 155 Query: 132 EWGWRIPFLI-----GCLIIPLIFLFRRTLEETEDFKAQKTHPSSKEIFSTLVSNWRIVL 186 + PF G + FL + + P +E + L S +R Sbjct: 156 GFSPHAPFFAAAALNGLNFLTGCFLLPES-------HKGERRPLRREALNPLAS-FRWAR 207 Query: 187 AGMMMSAMTTTTF-------YFITVYTTVYAKRTLEMSVTDSLLATVFVGLSNFFWLPMG 239 +++A+ F ++ R + T + F L + + Sbjct: 208 GMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMIT 267 Query: 240 GLLSDKIG-RRPVLVGITTLAIFTSYPVLSWLVSDISFSNLLITLAYFSFFFGMYNGTMV 298 G ++ ++G RR +++G+ +A T Y +L++ +++ LA + Sbjct: 268 GPVAARLGERRALMLGM--IADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLS 325 Query: 299 ATLAEVMPKRVRTVGFSLAFSLAAAIFGGMTPMACTFLVENTGNASTPAFWLMLAA 354 + E +++ G A + +I G P+ T + + W+ AA Sbjct: 326 RQVDEERQGQLQ--GSLAALTSLTSIVG---PLLFTAIYAASITTWNGWAWIAGAA 376
>INTIMIN#Intimin signature. Length = 939 Score = 31.6 bits (71), Expect = 0.005 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 10/57 (17%) Query: 267 VRYYDDQWSLNLGLGQR-FSPKWLGSVSVGWDSGAGDKVSTGGPTKGYYNLGVGAQY 322 RY D +++ NLG GQR F P+ + +V D + LG+G +Y Sbjct: 248 ARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDF---------SGDNTRLGIGGEY 295
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 59.5 bits (144), Expect = 8e-12 Identities = 64/355 (18%), Positives = 124/355 (34%), Gaps = 17/355 (4%) Query: 22 MMFGAMIFGTLSDKLGRKKTILICVTLFSGFTFIGAFAKGPTEFAIL-RFIAGLGIGGVM 80 G ++G LSD+LG K+ +L + + + IG I+ RFI G G Sbjct: 62 FSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFP 121 Query: 81 PNVVALMTEYAPKKIRSTLVAIMFSGYAIGGMTSALLGAWLVKDMGWQIMFLIAGIPLLL 140 V+ ++ Y PK+ R ++ S A+G +G + + W + LI I ++ Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181 Query: 141 LPLIWKFLPESLAFLVKSNHSEQAKNIVSKIAPQTQVNANTQLVLNEST-------TTDA 193 +P + K L + + + V + + + L S Sbjct: 182 VPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIR 241 Query: 194 PVRALFQQGRTFSTFMFWIAFFMCLLMVYALGSW--LPKLMLQAGYSLG---ASMLFLFA 248 V F F I ++ + + + M++ + L + +F Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 249 LNIGGMVGAIGGGALADRFHLKPVITIMFIVGSAALILLGI---NSPQFILYSLIAIAGA 305 + ++ GG L DR V+ I S + + + F+ ++ + G Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGG 361 Query: 306 ATIGSQILLYTFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALLSFELPHQ 360 + ++ ++ T V+ GM + + G + G LLS L Q Sbjct: 362 LSF-TKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415 Score = 31.4 bits (71), Expect = 0.006 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 255 VGAIGGGALADRFHLKPVITIMFIVGSAALILLGINSPQF---ILYSLIAIAGAATIGSQ 311 +G G L+D+ +K ++ I+ ++ + F I+ I AGAA + Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPA- 122 Query: 312 ILLYTFVAQFYPTALRSTGMGWASGIGRIGAIIGPVLTGALLS-FELPHQMNFLAIAIPG 370 L+ VA++ P R G I +G +GP + G + + + I I Sbjct: 123 -LVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIIT 181 Query: 371 V 371 V Sbjct: 182 V 182
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 94.3 bits (234), Expect = 3e-25 Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 7/259 (2%) Query: 3 NRQRFTDKVVIVTGSAQGIGRGVALQVAAEGGQVVMAD-RSEYVEEVLTEIQRTGGDAVT 61 N + K+ +TG+AQGIG VA +A++G + D E +E+V++ ++ A Sbjct: 2 NAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEA 61 Query: 62 VNADLETYAGAQAVVTKAIEHYGRVDILINNVGGAIWMKPFEEFSEEEIIKEVNRSLFPT 121 AD+ A + + G +DIL+ NV G + S+EE + + Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 122 LWCCRAVLPAMIKQQAGVIVNVSSIA--TRGINRIPYSASKGGVNALTASLAFEHAKDGI 179 R+V M+ +++G IV V S + Y++SK T L E A+ I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 180 RVNAVATGGTEAPPRKVPRNANPLSQNEKDWMQQVVDQTKDRTFMGRYGTIQEQVNAILF 239 R N V+ G TE + + + ++ ++ K + + + +A+LF Sbjct: 181 RCNIVSPGSTET---DMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLF 237 Query: 240 LASDEASYMTGSVIPVGGG 258 L S +A ++T + V GG Sbjct: 238 LVSGQAGHITMHNLCVDGG 256
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 28.9 bits (64), Expect = 0.027 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 188 VTNDFDLVALE-KLNELQAKFPWFEYRTVVASPESNHERKG 227 +T D+DL AL L E++ + P E+ VV +P S ++KG Sbjct: 488 LTADYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKG 528
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 29.0 bits (65), Expect = 0.017 Identities = 9/52 (17%), Positives = 15/52 (28%) Query: 253 AGSWGKQGGGSYGFENGHMLLWTQWANPEDRPNFPKADEYTEKYGEAMSKWM 304 A + G G + L + P ++ + P E M W Sbjct: 72 ALNPLLNAGPGLGLDEKSGLYHAYQSIPREKLSVPTLKREMAGLLEWMRGWR 123
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 34.9 bits (80), Expect = 0.001 Identities = 29/162 (17%), Positives = 47/162 (29%), Gaps = 19/162 (11%) Query: 524 DGNPLNRKVPTSDLESQGVEVGLSGQITDNVNLSLGYAQFSIKDTKNGGEARIY-NPNQT 582 D +N PT + G Q+ V +GY K E Y Sbjct: 41 DTGFINNNGPTHE-NQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQ 99 Query: 583 LNLLTTYTPPVLPKL----KVGAGLQWQDGIKLYDSNVNGTIK-QDAYALVNLMASYEVN 637 L Y P+ L ++G + D SNV G + Y + Sbjct: 100 LTAKLGY--PITDDLDIYTRLGGMVWRAD----TKSNVYGKNHDTGVSPVFAGGVEYAIT 153 Query: 638 DHITLQANGNNIFDKKYLNSFPDGQAFYGAPANYTVAVKFKY 679 I + + ++ N+ D P N +++ Y Sbjct: 154 PEIATRL------EYQWTNNIGDAHTIGTRPDNGMLSLGVSY 189
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 2e-08 Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 14/289 (4%) Query: 13 SGRIQKLLVQEGDKVQAGQVLATL-------NTNALQIQAKQAQAQLKAQQEAIIKQEVG 65 + +++++V+EG+ V+ G VL L +T Q QA+ + Q E+ Sbjct: 104 NSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELN 163 Query: 66 ARPEEITQAKAQLASAQAELDKTNKNLQRLQILVSSTDGRAISQQELDYAKSNQHSAEAA 125 PE + + E +L + Q + + LD ++ + + A Sbjct: 164 KLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQ-KYQKELNLDKKRAERLTVLAR 222 Query: 126 VRERQANLELL---IKGARKEDREATRAQYEVTKANLDLIKYNLTQAELRSPVNAVVRAR 182 + + + + + A++ V + ++ +S + + Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI 282 Query: 183 LQEVGDMTTAQKAVYTLALTNPKWIRVYVN--EQDLSSIKMGGTAQVIRDAYPNQPINGK 240 L + + L + + +L+ + A VIR + K Sbjct: 283 LSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLK 342 Query: 241 IGYISSVAEFTPKTVQTEEIRTTLVYEVRVYVNDPNDQLKMGQPVTVKV 289 + V + TL V D + +GQ +KV Sbjct: 343 VHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDI-GFINVGQNAIIKV 390 Score = 37.1 bits (86), Expect = 7e-05 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 8 LAFEQSGRIQKLLVQEGDKVQAGQVLATLNTNALQIQAKQAQAQLKAQQ-EAIIKQEVGA 66 L +Q+ +L QE V+A L + QI+++ A+ + Q + K E+ Sbjct: 243 LLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL- 301 Query: 67 RPEEITQAKAQLASAQAELDKTNKNLQRLQILVSSTDGRAISQQ 110 +++ Q + EL K + Q I + + + Sbjct: 302 --DKLRQTTDNIGLLTLELAKNEERQQASVI-RAPVSVKVQQLK 342
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 40.7 bits (95), Expect = 4e-06 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 11/176 (6%) Query: 170 ARERERGTLEALFVTPVRPFEIVLAKLI----PYVVVGMIDIVICIVAAHFIFEVPMRGS 225 R + T EA+ T +R +IVL ++ + G I + A + + + + Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAG-IGVVAAALGYTQWLSLLYA 150 Query: 226 LFSILFASFLYLIVSLLLGLTISGFAQSQFQASQIALLASFMPALMLSGFVFDTRNLPLV 285 L I + + +++ + F + + P L LSG VF LP+V Sbjct: 151 LPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLV-----ITPILFLSGAVFPVDQLPIV 205 Query: 286 VQIISQLLPATHFMVLIKTLFMGGDDWKLWLKECGILLGYIVVLICAVNFSLKKRL 341 Q ++ LP +H + LI+ + +G + G L YIV+ L++RL Sbjct: 206 FQTAARFLPLSHSIDLIRPIMLGHPVVDVCQ-HVGALCIYIVIPFFLSTALLRRRL 260
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 54.6 bits (131), Expect = 1e-10 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 2/171 (1%) Query: 163 AREREQGTFDQLLVTPYTPLQIMIGKALPPIFVGLMQSTIILLIILFWFKIPMNGSIGLL 222 R Q T++ +L T I++G+ + I ++ + L Sbjct: 92 GRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSLLYAL 151 Query: 223 YFGLFSFNVAVVGVGLSISALSLNMQQAMLFTFLLIMPLMLLSGLLTPVENMPKALQVAT 282 + +A +G+ ++AL+ + + + L+I P++ LSG + PV+ +P Q A Sbjct: 152 PVIALT-GLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAA 210 Query: 283 YANPLRFGINLVQRVYLEGASFAQVKLNFLPMIVLGIVTLPLAAWLFRNRL 333 PL I+L++ + L V + + + ++ L+ L R RL Sbjct: 211 RFLPLSHSIDLIRPIMLGHPV-VDVCQHVGALCIYIVIPFFLSTALLRRRL 260
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 47.5 bits (113), Expect = 3e-08 Identities = 65/322 (20%), Positives = 110/322 (34%), Gaps = 41/322 (12%) Query: 16 TEVNSNSSRIGVKGEEKLTDKLSAVYLAEWAISTDGSGSDTDLSARNRFIGLKTEGVGTL 75 T + S+IG KG+E L + L A++ E S +G+D+ R FIGLK G G L Sbjct: 51 TGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLKG-GFGKL 107 Query: 76 KVGKYDSYFKTSAGSNQDIFNDDTRLDITNIMYGENRLDNVVGFELDPKLLAGLTFNIMA 135 +VG+ +S K G + L + I E RL + D AGL Sbjct: 108 RVGRLNSVLK-DTGDINPWDSKSDYLGVNKIAEPEARL---ISVRYDSPEFAGL------ 157 Query: 136 QTGESTSDSKKGETGKDSKNDSFDSVSTSLGYENKDLGLAIAAAGDFGIKGKYAAYGLKD 195 S S + ++ + +S Y+N G + G + + + Sbjct: 158 ------SGSVQYALNDNAGRHNSESYHAGFNYKNG--GFFVQYGGAYKRHHQVQENVNIE 209 Query: 196 VYTDAYRVTGSYDIAKSGFVVGALWQHAEPTDDLTAYGQTYKSDGSIDKAGKAYRGLEEE 255 Y +R+ YD AL+ + Q + + + Sbjct: 210 KY-QIHRLVSGYD-------NDALY--------ASVAVQQQDAKLVEENYSHN----SQT 249 Query: 256 AYAVTAAYKIPNTKIKVKAEYASAETQVSGQADRKIDLYGLGLDYQINKQARFYGIVAQQ 315 A T AY+ N +V + + + + D +G +Y +K+ Sbjct: 250 EVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWL 309 Query: 316 KRDWLNDDDKQTVVGTGIEYNF 337 + T G G+ + F Sbjct: 310 QEGKGESKFVSTAGGVGLRHKF 331
>PF05704#Capsular polysaccharide synthesis protein Length = 307 Score = 25.6 bits (56), Expect = 0.028 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 4/57 (7%) Query: 28 LQDDYNLIYASKGFCFKDQDAKEKYGNENCHTTKP----KFSDKEQQRLDAIKERQK 80 + D+ + A K N N H + + + + + QK Sbjct: 222 IFHDFVSVMAVSKEYSKYWKEIPYVNNVNPHMLQYLGNLPYDNSMFNYIKSTSPVQK 278
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 47.9 bits (114), Expect = 4e-09 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 10/113 (8%) Query: 58 VHAFRTAEIRPQVGGIIEKVLFKQGSEVRAGQALYKINSETFEADVNSNRASLNKAEAEV 117 H+ R+ EI+P I+++++ K+G VR G L K+ + EAD ++SL +A E Sbjct: 91 THSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQ 150 Query: 118 ARLKVQLERYEQ----------LLPSNAISKQEVSNAQAQYRQALADVAQMKA 160 R ++ E +S++EV + ++ + K Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY 203
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.4 bits (175), Expect = 8e-17 Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 1 MSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEVLNKIRQ-KAQTPVIMLTALDQD 59 V N A+ DL++ D+ +P+ N +++L +I++ + PV++++A + Sbjct: 28 YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTF 87 Query: 60 IDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 95 + + A GA D++ KPF+ E++ + L + Sbjct: 88 MTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 53.9 bits (129), Expect = 9e-11 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 21 LALDVTDAVATKDVVQKIIKHFGHLDIAFANAGISWRDGASTIASCDEAEFDKIVEVDLL 80 DV D+ A ++ +I + G +DI AG+ R G I S + E++ V+ Sbjct: 62 FPADVRDSAAIDEITARIEREMGPIDILVNVAGV-LRPGL--IHSLSDEEWEATFSVNST 118 Query: 81 GVWRTVRAALPEV-TRNKGQILITSSVYCFGMANTP------YAASKAAVEMLGRCLRTE 133 GV+ R+ + R G I+ S A P YA+SKAA M +CL E Sbjct: 119 GVFNASRSVSKYMMDRRSGSIVTVGS----NPAGVPRTSMAAYASSKAAAVMFTKCLGLE 174 Query: 134 IAYTGATASVVYPGWTAT 151 +A ++V PG T T Sbjct: 175 LAEYNIRCNIVSPGSTET 192
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 48.9 bits (116), Expect = 2e-09 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 1/127 (0%) Query: 5 AQHFGKIDVVIANAGIASTEALEHMAPETFERTIDINLTGVFRTFRAAIPYVK-QTQGYL 63 + G ID+++ AG+ + ++ E +E T +N TGVF R+ Y+ + G + Sbjct: 80 EREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSKYMMDRRSGSI 139 Query: 64 LAVSSMAAFVHSPLNTHYTSSKAGVWALCDSLRLELKYLNVGVGSLHPTFFKTPLMDNIQ 123 + V S A V Y SSKA L LEL N+ + P +T + ++ Sbjct: 140 VTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLW 199 Query: 124 NDPAGKA 130 D G Sbjct: 200 ADENGAE 206
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 29.7 bits (66), Expect = 0.013 Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 73 AKSSSAPMSQKQQTTDSFREEKYENYYIEQYKT 105 +K ++A M KQ +TD EK +YY E K Sbjct: 388 SKKNNAEMKSKQMSTDQMTSEKEFDYYTETLKA 420
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.3 bits (94), Expect = 5e-07 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 6/108 (5%) Query: 41 LWIAIQEGTVVGSVQLSLVSKKNGVHRAEVEKLMVLTSARKQGIATLLLNELENFSKEKG 100 ++ E +G +++ N A +E + V RK+G+ T LL++ ++KE Sbjct: 67 AFLYYLENNCIGRIKIR----SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 101 LRLLVLDTREGDVSEL-LYSKIGFVRVGVIPNFALSSNGNYDGTAIYY 147 L+L+T++ ++S Y+K F +G + S+ + AI++ Sbjct: 123 FCGLMLETQDINISACHFYAKHHF-IIGAVDTMLYSNFPTANEIAIFW 169
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 1e-10 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 4/135 (2%) Query: 2 IQKEAGVSKATMYGCFKNKEAMFAAVIERQCTNMQKQIM-SVETKAKNLRSALTEIGKTY 60 I K AGV++ +Y FK+K +F+ + E +N+ + + + S L EI Sbjct: 37 IAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHV 96 Query: 61 LCFILSHSGLAFFRVCI---AEAVRFPELSEKFFEVGPQRLANIIAGYLEKSIKQGEIEL 117 L ++ I E V + ++ + I L+ I+ + Sbjct: 97 LESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPA 156 Query: 118 TSSSEVAANIFLSLL 132 + AA I + Sbjct: 157 DLMTRRAAIIMRGYI 171
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 45.3 bits (107), Expect = 4e-07 Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 18/319 (5%) Query: 1 MGISVDSGYWVSSIYASAMIIGMILSTSWAVIFSMRRVLLFAIGLCLFSSVLIPFSPN-I 59 S WV++ + IG + + ++R+LLF I + F SV+ + Sbjct: 44 FNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFF 103 Query: 60 EIFYLLRGLQGLANGLTIPLLMACALRFLGPEIRLWGLACYALTATFFPNLSAALAAFYL 119 + + R +QG L+M R++ E R + A+ Sbjct: 104 SLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163 Query: 120 DVIGWKMIFFQTIPFCALSAALVYFGIPQDPLNYSRIKTYDWTGAILAIIGLASLSTMLL 179 I W + ++ V F + +D G IL +G+ +L Sbjct: 164 HYIHWSYLLL----IPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIV---FFML 216 Query: 180 HGNHLDWFHSKLICVLALISAITLPLFLIHEWRYPTPLIKPQMLEIRNFGYAVI-ALFCF 238 ++S ++ +F+ H + P + P + + F V+ F Sbjct: 217 FTTSYSISF-------LIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIF 269 Query: 239 VVIGMSTSTLPLNYLSAVHGYKPTQTMWIGLQIAALQFIYIPIVIKVLNQAWVDSRYVHG 298 + S +P + VH + + + + I + +L YV Sbjct: 270 GTVAGFVSMVPY-MMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDR-RGPLYVLN 327 Query: 299 FGLLLVMVGCLGASQLDTT 317 G+ + V L AS L T Sbjct: 328 IGVTFLSVSFLTASFLLET 346
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 112 bits (281), Expect = 3e-30 Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 75/354 (21%) Query: 2 VIAFIIVLVSILWILKVIFLPSSVVKTDDARVDV--EYSTIAPKVSGNIEEIYIKDHQTV 59 ++A+ I+ ++ + + +V T + ++ I P + ++EI +K+ ++V Sbjct: 59 LVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESV 118 Query: 60 KKGQLLARIDARDYQAALAEAESNYAKAQAD----------------------------- 90 +KG +L ++ A +A + +S+ +A+ + Sbjct: 119 RKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQN 178 Query: 91 ------------LNEAMLAVERQPTVIRET-----------EAQLRKVEAGIKLTKDNTA 127 + E + Q A++ + E ++ K Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 128 RYEQLQALGAESRLITQQSKTTLTEQYADLDSSKEKVIDAQYQLNQYK---IQVQAK--- 181 + L A ++ + + E +L K ++ + ++ K V Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 182 ---------QAALKQAQAALDKAKLNLSYTEIRAPIDGMIGQKSAN-VGNFVGAGNPLMV 231 + L K + + IRAP+ + Q + G V LMV Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMV 358 Query: 232 VVPLDQVY-VEANFREIELKQIKIGQPVTVYVDAYNV----ELKGVVDSFSPST 280 +VP D V A + ++ I +GQ + V+A+ L G V + + Sbjct: 359 IVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA 412
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 71.6 bits (175), Expect = 6e-17 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 1/157 (0%) Query: 4 QKVVDEIIAAGGEAMANGASVTDIEQVQQMVDETIARWERVDILINNAGILRDKTFSKMS 63 +KVV + A A A A V D + ++ +DIL+N AG+LR +S Sbjct: 46 EKVVSSLKAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLS 105 Query: 64 LDDFRTVIDVHLMGAVNCTKAVWDIMREQKYGRIVMTTSSSGLYGNFGQSNYSAAKMALV 123 +++ V+ G N +++V M +++ G IV S+ + Y+++K A V Sbjct: 106 DEEWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAV 165 Query: 124 GLMQTLALEGEKSNVRVNCLAP-TAATRMLEGLLPEE 159 + L LE + N+R N ++P + T M L +E Sbjct: 166 MFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADE 202
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.0 bits (202), Expect = 4e-21 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 10/221 (4%) Query: 4 DLNIEGLNTVVEPLRQAGVEVVAQVCDVSCEADVQALVQSAVTQFGRIDVGINNAGMSPP 63 D N E L VV L+ A DV A + + + G ID+ +N AG+ P Sbjct: 39 DYNPEKLEKVVSSLKAEARHAEAFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRP 98 Query: 64 MKSFIDTDEADLDLSFAVNAKGVFFGMKHQIRQMLQQGGGIILNVASVAGLGAAPKLAAY 123 +DE + + +F+VN+ GVF + + M+ + G I+ V S +AAY Sbjct: 99 GLIHSLSDE-EWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAY 157 Query: 124 AAAKHAVVGLTKTAAVEYANKGIRVNAICPFYTTTPMVV------DSELKEKQDFLAQ-- 175 A++K A V TK +E A IR N + P T T M + + + L Sbjct: 158 ASSKAAAVMFTKCLGLELAEYNIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFK 217 Query: 176 -ASPMKRLGHPSEVVAMMLMMCAKENSYLTGQAIAIDGGVT 215 P+K+L PS++ +L + + + ++T + +DGG T Sbjct: 218 TGIPLKKLAKPSDIADAVLFLVSGQAGHITMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (313), Expect = 7e-37 Identities = 89/255 (34%), Positives = 126/255 (49%), Gaps = 9/255 (3%) Query: 8 LTGKIALVTGASRGIGEEIAKLLAEQGAHVIVSSRKIEDCQRVANEIIAANGKAEAAACH 67 + GKIA +TGA++GIGE +A+ LA QGAH+ E ++V + + A AEA Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 VGKLEDIAAIFEYIRKEHGRLDILVNNAAANPYFGHILDTDIGAYNKTVEVNIRGYFFMS 127 V I I I +E G +DILV N A G I + T VN G F S Sbjct: 66 VRDSAAIDEITARIEREMGPIDILV-NVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 128 IEAGKLMKEQGSGAIVNTASVNALQPGDRQGIYSITKAAVVNMTKAFAKECGPLGIRVNA 187 K M ++ SG+IV S A P Y+ +KAA V TK E IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 188 LLPGLTKTKFASALFENED----IYKSWMDT----IPLRRHAEPREMAGTVLYLVSDAAS 239 + PG T+T +L+ +E+ + K ++T IPL++ A+P ++A VL+LVS A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 240 YTNGECIVVDGGLTI 254 + + VDGG T+ Sbjct: 245 HITMHNLCVDGGATL 259
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.6 bits (105), Expect = 3e-08 Identities = 21/153 (13%), Positives = 61/153 (39%), Gaps = 10/153 (6%) Query: 6 ERASTSKIAKVAGVAEGTLFTYFSNKEELLNQLYLSLKAELRQ-VMMLSYPTNADLQTQM 64 S +IAK AGV G ++ +F +K +L ++++ ++ + + + D + + Sbjct: 30 SSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVL 89 Query: 65 SHIWQSYLDWSLEAPLKRKVMAQLSTSEQ-------ITEQSKQIGMQTFCDFTQNIQERI 117 I L+ ++ +R +M + + + + + + ++++ Q ++ I Sbjct: 90 REILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCI 149 Query: 118 NDGKLRDY--PPLFIASILGALAEVTLNFIAQD 148 L + G ++ + N++ Sbjct: 150 EAKMLPADLMTRRAAIIMRGYISGLMENWLFAP 182
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 50.4 bits (120), Expect = 5e-09 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 328 PVSAVQPVEVISQPAMVEPEPEPEPEPE---PEPEPEPEPEPEPEPEPEPEPEPNQDLMV 384 P AVQP EPEP PEP E +P+P+P+P+P+P + + +P +D+ Sbjct: 57 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 116 Query: 385 FDPN 388 + Sbjct: 117 VESR 120 Score = 48.8 bits (116), Expect = 2e-08 Identities = 38/118 (32%), Positives = 45/118 (38%), Gaps = 26/118 (22%) Query: 324 QVIAPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEP-EPEPEPEPEPEPEPEPNQDL 382 QVI + QP+ V MV P P+ P EPEPEPEP PEP E Sbjct: 34 QVIELPAPAQPISV----TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE----- 84 Query: 383 MVFDPNHHELIGLESAVVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIEPEPASTAE 440 A V + P P +K VQ Q + VK +E PAS E Sbjct: 85 ---------------APVVIEKPKPKPKPKPKPVKK-VQEQPKRDVKPVESRPASPFE 126 Score = 35.3 bits (81), Expect = 4e-04 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 325 VIAPVSAVQPVEVISQPAMV---EPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPNQD 381 V+ P +P+ + A V +P+P+P+P+P+P + + +P+ + +P P ++ Sbjct: 68 VVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFEN 127
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 256 bits (656), Expect = 1e-82 Identities = 86/401 (21%), Positives = 182/401 (45%), Gaps = 13/401 (3%) Query: 1 MHVATPSLSAPLNLTANQLLWIIDIYSLIMAGLILPMGALGDRIGFKKLLFIGTAVFGVG 60 ++V+ P ++ N W+ + L + G L D++G K+LL G + G Sbjct: 33 LNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFG 92 Query: 61 SLAAAFSPTAYA-LIASRAVLGLGAAMLIPATLSGIRNAFTEEKQRNFALGLWSTVGGGG 119 S+ + ++ LI +R + G GAA PA + + + ++ R A GL ++ G Sbjct: 93 SVIGFVGHSFFSLLIMARFIQGAGAAA-FPALVMVVVARYIPKENRGKAFGLIGSIVAMG 151 Query: 120 AAFGPLVGGFVLEHFHWGAVFLINIPIILVVLVMIVMIIPKQQEKTDQPINLGQALVLVV 179 GP +GG + + HW +L+ IP+I ++ V +M + K++ + ++ +++ V Sbjct: 152 EGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSV 209 Query: 180 AILSLIYSIKSAMYNFSVLTVVMFVVGISTLIHFIRSQKRAMTPMIDLELFKHPVISTSI 239 I+ + S +F +++V+ F++ F++ ++ P +D L K+ + Sbjct: 210 GIVFFMLFTTSYSISFLIVSVLSFLI-------FVKHIRKVTDPFVDPGLGKNIPFMIGV 262 Query: 240 VMAVVSMIALVGFELLLSQELQFVHGFSPLQA-AMFIIPFMIAISLGGPLAGICLNKWGL 298 + + + GF ++ ++ VH S + ++ I P +++ + G + GI +++ G Sbjct: 263 LCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGP 322 Query: 299 RRVSSLGILVSALSLWGLAQLNFSTDHFLAWTCMVFLGFSIEIALLASTAAIMSSVPPQK 358 V ++G+ ++S + L +T F+ + LG + ST S + Sbjct: 323 LYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEA 382 Query: 359 ASAAGAIEGMAYELGAGLGVAIFGLMLSWFYSRSIILPAEL 399 + + ++ L G G+AI G +LS +LP E+ Sbjct: 383 GAGMSLLNFTSF-LSEGTGIAIVGGLLSIPLLDQRLLPMEV 422
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 43.5 bits (102), Expect = 9e-08 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%) Query: 6 TEGFTAMTVRRIATEAQTSTGQVHHHFSSASHLKAEAFLKLMEQLDEIEQTL-------- 57 +G ++ ++ IA A + G ++ HF S L +E + + E+E Sbjct: 26 QQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDP 85 Query: 58 --QTTSQFQRLFILLGAENIDRLQPYLRLWNEAELLIEQDIEIQKAYNLAMQSWHQAIVQ 115 + E RL + + + + +Q+A + I Q Sbjct: 86 LSVLREILIHVLESTVTEERRRL--LMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQ 143 Query: 116 SIECGQKEGEFKNRSNSTDIAWRLIAFVCGL 146 +++ + + A + ++ GL Sbjct: 144 TLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.5 bits (185), Expect = 2e-17 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 23/262 (8%) Query: 182 AKPLAGKTALVTGASRGIGEAIAHVLARDGAHVICLDVPQQQADLDRVAADISGST---L 238 AK + GK A +TGA++GIGEA+A LA GAH+ +D ++ + + Sbjct: 3 AKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF 62 Query: 239 AIDITAADAGEKIKAAAAKQ-GGLDIIVHNAGITRDKTLANMKPELWDLVININ----LS 293 D+ + A ++I A ++ G +DI+V+ AG+ R + ++ E W+ ++N + Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 294 AAERVNDYLLENDGLNANGRIVCVSSISGIAGNLGQTNYAASKAGVIGLVKFTA-PILKN 352 A+ V+ Y+++ G IV V S YA+SKA + K + + Sbjct: 123 ASRSVSKYMMDRRS----GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEY 178 Query: 353 GITINAVAPGFIETQMTAAIPFAIREAGRRMNS----------MQQGGLPVDVAETIAWF 402 I N V+PG ET M ++ A + + +++ P D+A+ + + Sbjct: 179 NIRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFL 238 Query: 403 ASTASTGVNGNVVRVCGQSLLG 424 S + + + + V G + LG Sbjct: 239 VSGQAGHITMHNLCVDGGATLG 260
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.4 bits (118), Expect = 1e-08 Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 20 ATVDVAPVVSKTITDWQEYSGRLEAIDQVDIRPQVSGKLIAVHFKDGSLVKKGDLLFTID 79 V++ + +T +SGR + I +P + + + K+G V+KGD+L + Sbjct: 78 GQVEIVATANGKLT----HSGRSKEI-----KPIENSIVKEIIVKEGESVRKGDVLLKLT 128 Query: 80 PRPFEAELNRAKAQLASAEAQVTYTASNLSRIQRLIQSNAVSRQE----LDLAENDARSA 135 EA+ + ++ L A + LSR L + + + +++E + Sbjct: 129 ALGAEADTLKTQSSLLQARLEQ-TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRL 187 Query: 136 NANLQAARAAVQSARLNLE 154 + ++ + Q+ + E Sbjct: 188 TSLIKEQFSTWQNQKYQKE 206 Score = 49.1 bits (117), Expect = 2e-08 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 12/105 (11%) Query: 86 ELNRAKAQLASAEAQVTYTASNLSRIQRLIQSNAVSRQELDLAENDARS--------ANA 137 + + + A ++ S L +I+ I S +++E L ++ Sbjct: 253 AVLEQENKYVEAVNELRVYKSQLEQIESEILS---AKEEYQLVTQLFKNEILDKLRQTTD 309 Query: 138 NLQAARAAVQSARLNLEYTRITAPVSGRISRAEV-TVGNVVSAGN 181 N+ + + + I APVS ++ + +V T G VV+ Sbjct: 310 NIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAE 354
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1003 bits (2596), Expect = 0.0 Identities = 397/968 (41%), Positives = 593/968 (61%), Gaps = 18/968 (1%) Query: 1 MLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQAMPRLPEDVQRLGVTTLKSSP 60 ++YM S ++S G++TIT+ F+ G DPD AQ VQN++ A P LP++VQ+ G++ KSS Sbjct: 75 LMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSS 134 Query: 61 TLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVGEVGLFGSGDYAMRVWLDPQKV 120 + MV S + + +Y NVKD L+RL GVG+V LFG YAMR+WLD + Sbjct: 135 SYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQYAMRIWLDADLL 193 Query: 121 AQRNLTATEIVNAIREQNIQVAAGTIGASPSNS--PLQLSVNAQGRLTTEQEFADIILKT 178 + LT +++N ++ QN Q+AAG +G +P+ L S+ AQ R +EF + L+ Sbjct: 194 NKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRV 253 Query: 179 APDGAVTRLGDVARVELAASQYGLRSLLDNKQAVAIPIFQAPGANALQVSDQVRSTMKEL 238 DG+V RL DVARVEL Y + + ++ K A + I A GANAL + +++ + EL Sbjct: 254 NSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAEL 313 Query: 239 SKDFPSSIKYDIVYDPTQFVRASIKAVVHTLLEAIALVVVVVILFLQTWRASIIPLLAVP 298 FP +K YD T FV+ SI VV TL EAI LV +V+ LFLQ RA++IP +AVP Sbjct: 314 QPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVP 373 Query: 299 VSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVER-NIEAGLNPREATYR 357 V ++GTFA++ AFGYSIN L++FGMVLAIG++VDDAIVVVENVER +E L P+EAT + Sbjct: 374 VVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEK 433 Query: 358 AMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVISAFNSLTLSPALA 417 +M ++ G ++ IA+ L AVF+P+AF G TG Y+QF++TI + +S +L L+PAL Sbjct: 434 SMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALC 493 Query: 418 ALLLKGHDAKPDALTRIMNRVFGRFFALFNRVFSRASDRYSQGVSRVISHKASAMGVYAA 477 A LLK ++ + G FF FN F + + Y+ V +++ + +YA Sbjct: 494 ATLLKP-------VSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYAL 546 Query: 478 LLGLTVGISYIVPGGFVPAQDKQYLISFAQLPNGASLDRTEAVIRKMSDTALK--QPGVE 535 ++ V + +P F+P +D+ ++ QLP GA+ +RT+ V+ +++D LK + VE Sbjct: 547 IVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVE 606 Query: 536 SAVAFPGLSINGFTNSSSAGIVFVTLKPFDERKAKDLSANAIAGALNQKYSAIQDAYIAV 595 S G S +G + +AG+ FV+LKP++ER + SA A+ + I+D ++ Sbjct: 607 SVFTVNGFSFSG--QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIP 664 Query: 596 FPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFM-KAAQSAPELGPMFSSYQINVP 654 F P ++ LGT GF +L D+ LG+ AL A + AAQ L + + + Sbjct: 665 FNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTA 724 Query: 655 QLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFGRVYQVRAQADAPFRANPED 714 Q +++D+ KA+ GV+++D+ T+ LG YVNDF GRV ++ QADA FR PED Sbjct: 725 QFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPED 784 Query: 715 ILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSADINGGPAPGYSSSQAEAAVE 774 + +L R++ G+MVP S+ YG + RYNG S +I G APG SS A A +E Sbjct: 785 VDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALME 844 Query: 775 RIAAQTLPRGIKFEWTDLTYQKILAGNAGLWVFPISVLLVFLVLAAQYESLTLPLAVILI 834 +A++ LP GI ++WT ++YQ+ L+GN + IS ++VFL LAA YES ++P++V+L+ Sbjct: 845 NLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLV 903 Query: 835 VPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAILIVEFAREL-EMQGATAFKAA 893 VP+GI+ L L N+++ +GL+ +GL+ KNAILIVEFA++L E +G +A Sbjct: 904 VPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEAT 963 Query: 894 VEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGMIGVTFFGLFLTPA 953 + A R+RLRPILMTS+AFI+GV+PL S GAGS ++A+G+ V GM+ T +F P Sbjct: 964 LMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPV 1023 Query: 954 FYVLIRTL 961 F+V+IR Sbjct: 1024 FFVVIRRC 1031 Score = 84.1 bits (208), Expect = 2e-18 Identities = 86/461 (18%), Positives = 169/461 (36%), Gaps = 40/461 (8%) Query: 534 VESAVAFP-GLSINGFTN-------SSSAGIVFVTLKPFDERKAKDLSANAIAGALNQKY 585 V+ V ++NG N S SAG V +TL F D++ + L Sbjct: 57 VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLT-FQSGTDPDIAQVQVQNKLQLAT 115 Query: 586 SAIQDAYIAVFPPPPVMGLGTMGGFKLQLE---DRGALGYSALNDAAQNFMKAAQSAPEL 642 + + + + + D ++D + +K L Sbjct: 116 PLLPQE----VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVK-----DTL 166 Query: 643 GPMFSSYQINV----PQLNVDLDRVKAKQQGVAVTDVFNTM-----QIYLGSQYVNDFNR 693 + + + + + LD + + DV N + QI G Q Sbjct: 167 SRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAG-QLGGTPAL 225 Query: 694 FGRVYQVRAQADAPFRANPEDILQLKTR-NSAGQMVPLSSLVNVTQTYGP-EMVVRYNGY 751 G+ A F NPE+ ++ R NS G +V L + V ++ R NG Sbjct: 226 PGQQLNASIIAQTRF-KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGK 284 Query: 752 TSADINGGPAPGYSSSQ-AEAAVERIA--AQTLPRGIKFEWT-DLTYQKILAGNAGLWVF 807 +A + A G ++ A+A ++A P+G+K + D T L+ + + Sbjct: 285 PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTL 344 Query: 808 PISVLLVFLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGL 867 +++LVFLV+ +++ L + VP+ +L + N T G+++ +GL Sbjct: 345 FEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGL 404 Query: 868 ACKNAILIVE-FARELEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGS 926 +AI++VE R + +A ++ ++ ++ +P+ G+ Sbjct: 405 LVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 927 EMRHAMGVAVFFGMIGVTFFGLFLTPAF-YVLIRTLNSKHK 966 + + + M L LTPA L++ ++++H Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHH 505
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 30.8 bits (69), Expect = 0.012 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 9/124 (7%) Query: 255 VFPGNQGGPLMHAIAAKAICFKEAMSDDFKAYQQQVVKNAQAMAEVFIARGYDVVSGG-- 312 + NQG + ++ A A D K A+ + A+ +V S G Sbjct: 212 IDADNQGQLNITSVVAAINSKYFAAQYDKKQLTNVTFDTETAVKDALKAQKIEVSSVGYF 271 Query: 313 TDNHLFLLSL-IKQDVTGKDADAWLGAAHITVNKNSVPNDPRSPFVTS------GIRIGT 365 H F +++ + GK A + V VP+ ++ + R+GT Sbjct: 272 KAPHTFTVNVKATSNKNGKSATLPVTVTVPNVADPVVPSQSKTIMHNAYFYDKDAKRVGT 331 Query: 366 PAVT 369 VT Sbjct: 332 DKVT 335
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 66.1 bits (161), Expect = 3e-15 Identities = 48/218 (22%), Positives = 103/218 (47%), Gaps = 7/218 (3%) Query: 3 LYFVIFGNLVGSRIGEMGGVSYMQFIVPGLIMMAVITNS-YANVSSSFFSVKFQKSIEEL 61 +Y G +G +G +GGVSY F+ G++ + +T + + + ++F ++ Q++ E + Sbjct: 44 IYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAM 103 Query: 62 IMSPVPLHIILWGYVIGGICRGVLVGAIVTAMSMFFTDLFIHNWFVTIYT---VLITSVL 118 + + + L I+ G + + L GA + ++ L W +Y + +T + Sbjct: 104 LYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAA---LGYTQWLSLLYALPVIALTGLA 160 Query: 119 FSLGGFINAVYAKSFDDISIIPTFVLTPLTYLGGVFYAISALGPFWQKLSLINPIVYMVN 178 F+ G + A S+D T V+TP+ +L G + + L +Q + P+ + ++ Sbjct: 161 FASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSID 220 Query: 179 AFRFGILGHSDVNVSFSLIIVTLCCAVLYGIAYYLLAR 216 R +LGH V+V + + + + + ++ LL R Sbjct: 221 LIRPIMLGHPVVDVCQHVGALCIYIVIPFFLSTALLRR 258
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.4 bits (120), Expect = 4e-10 Identities = 15/97 (15%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 13 VVNKAIDLFHHRGFHLIGVDRIVKESEITKATFYNYFHSKERLIEICLMVQKEKLQEQVV 72 +++ A+ LF +G + I K + +T+ Y +F K L + + + E + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 73 AMVEYDLSTP-AIDKLKKLYFLHTDIEGPYYLLFKAV 108 P ++ + ++ L + + L + Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEI 112
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 26.9 bits (59), Expect = 0.043 Identities = 11/34 (32%), Positives = 14/34 (41%) Query: 117 AFGTVDSVWKSLLSYGLSQSERGNQRPYINSCYW 150 A G LL +GL Q+E N+ P W Sbjct: 49 ATGAAVGTVSGLLGWGLKQAEEANKTPDKPDKVW 82
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 35.3 bits (81), Expect = 3e-05 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 17/87 (19%) Query: 34 VAIEDDLIVGHVAISPVTITSGDTGWYGLG---PISVCPKKQGIGIGSLLMNAALQKLKE 90 + ++ +G + I + W G I+V + G+G+ L++ A++ KE Sbjct: 69 LYYLENNCIGRIKIR--------SNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKE 120 Query: 91 LGGKGCVL------LGDPNYYSRFGFK 111 G +L + ++Y++ F Sbjct: 121 NHFCGLMLETQDINISACHFYAKHHFI 147
>PF05272#Virulence-associated E family protein Length = 892 Score = 32.0 bits (72), Expect = 0.005 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Query: 83 GGIAERAKMRSQAIATLALVALVYP---FFEGMVWNGNYGLQKWLETTFGAAFHDFAGSV 139 G A+ QAI A + V+P + + W+ L+KWL G D+ Sbjct: 510 GTGEASAQTTEQAINVAADMNRVHPFRDWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRR 569 Query: 140 V--VHAMGGWIALAAV 153 + + +G +I + V Sbjct: 570 LRYLQLVGKYILMGHV 585
>TATBPROTEIN#Bacterial sec-independent translocation TatB protein signature. Length = 171 Score = 28.1 bits (62), Expect = 0.041 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 23/102 (22%) Query: 110 LPFAIFALAAIIRRGLKPIDDFKNELKE-------RDS---------EELTPIEVHDYPQ 153 LP A+ +A IR +NEL + +DS LTP E+ Sbjct: 25 LPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTP-ELKASMD 83 Query: 154 ELLPTIDEMNRLFERISKAQNEQKQFIADAAHELRTPVTALN 195 EL + M +R A + +K +D AH + PV N Sbjct: 84 ELRQAAESM----KRSYVANDPEKA--SDEAHTIHNPVVKDN 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 47.5 bits (113), Expect = 5e-09 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 2 MDGMQVLKQIRQRAA-TPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARI-HAL 59 + +L +I++ PVL++SA++ + GA DYL KP++ EL+ I AL Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 60 LRRSGVEAQLASQDQ 74 ++L Q Sbjct: 120 AEPKRRPSKLEDDSQ 134
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 35.7 bits (82), Expect = 3e-04 Identities = 15/41 (36%), Positives = 18/41 (43%) Query: 29 VQEQRQVQQQQQQVQQQQQVQLAEVKAQPQPVAAPVSPLAG 69 + + Q QQ Q Q Q Q A+ AQ AA V L G Sbjct: 330 IHLNFVMPPQAQQQQGQGQQQQAQATAQEAVAAAAVRLLNG 370
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.8 bits (80), Expect = 5e-04 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 13/212 (6%) Query: 82 LFIFFITLLFMNLTGATQDIATDALAVNLLQHDQQHWGNTFQVVGSRLGF-IVGGGAVLW 140 L++ +I + +TGAT +A +A ++ F + + GF +V G + Sbjct: 96 LWVLYIGRIVAGITGATGAVAGAYIADITDGDERARH---FGFMSACFGFGMVAGPVLGG 152 Query: 141 CLDWLSWQPTFLLLAALVFIN-TLPILLFKEPSHTSHSPHQYSQPSLVTKIKSYLGYFSQ 199 + S F AAL +N L E P + + + + G Sbjct: 153 LMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGM--- 209 Query: 200 NKELRSWLIVLITFKVADGLAGPLLKPLMVD-MGLSFTQIGIYITMLGAIAALLGALIAG 258 + + + V ++ + L D T IGI + G + +L A+I G Sbjct: 210 -TVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 259 WMLKYISRSTALMAFSILKIMSLGGYAYLAYA 290 + + ALM I GY LA+A Sbjct: 269 PVAARLGERRALMLGMIADGT---GYILLAFA 297
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.2 bits (216), Expect = 1e-19 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Query: 1334 IMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEV 1393 I++ DD +R V ++ L R GYDV + + DL++ D+ MP + F++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1394 LNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVASE 1453 L ++ +P+++++++ +A G Y+ KPF EL+ I L + Sbjct: 66 LPRIKKARPD--LPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 1454 SEVK 1457 Sbjct: 124 RRPS 127
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 57.5 bits (139), Expect = 1e-13 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 1 MTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQG 60 A DLV+ DVVMP N F +I + +PV+++S ++ + +G Sbjct: 40 WRWIAAGDGDLVVTDVVMPDENAFDLLPRI-KKAR-PDLPVLVMSAQNTFMTAIKASEKG 97 Query: 61 AIDYLIKPIEEKQLIDVIKQFL 82 A DYL KP + +LI +I + L Sbjct: 98 AYDYLPKPFDLTELIGIIGRAL 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.6 bits (186), Expect = 2e-19 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 2/115 (1%) Query: 2 VIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCA 61 V DD IR L R G +V + IA + D+V D++MP + + Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 62 LIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVS 116 IK + ++PV+++S+++ K G+ +YL KPF EL+ I ++ Sbjct: 68 RIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.0 bits (104), Expect = 5e-07 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 49/217 (22%) Query: 102 RLNNQDNAARLAQAQANLASAQAQAELARNLMNRKQRLLNQGFIARVEF---EQSQVDYK 158 LN A A + + + + ++ ++ LL++ IA+ E V+ Sbjct: 206 ELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 159 GQLESVRAQ-------------------------------QANVDIA------KKADRDG 181 +L ++Q Q +I K + Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQ 325 Query: 182 ---IITSPISGVITKRQV-EPGQTVSVGQTLFEIV-NPDQLEIQAKLPIEQQSALKVGSS 236 +I +P+S + + +V G V+ +TL IV D LE+ A + + + VG + Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQN 385 Query: 237 IQYQI----QGNSKQLHAILTRISPVADQDSRQIEFF 269 ++ L + I+ A +D R F Sbjct: 386 AIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVF 422 Score = 37.1 bits (86), Expect = 1e-04 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 10/120 (8%) Query: 75 IQAQVSATATAVTANVGQKVQKGQVLVRLNNQDNAARLAQAQANLASAQAQAELARNLMN 134 I+ ++ + G+ V+KG VL++L A + Q++L A+ + + L Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSR 158 Query: 135 --RKQRLLNQGFIARVEFEQS--------QVDYKGQLESVRAQQANVDIAKKADRDGIIT 184 +L F+ K Q + + Q+ ++ R +T Sbjct: 159 SIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLT 218
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 775 bits (2002), Expect = 0.0 Identities = 283/1020 (27%), Positives = 488/1020 (47%), Gaps = 34/1020 (3%) Query: 1 MVLGLASWKRMTVEEFPNIDFPFVVVTTQYAGASPEAVESDITKKLEDQINTISGIKQIT 60 M+ G + ++ V ++P I P V V+ Y GA + V+ +T+ +E +N I + ++ Sbjct: 20 MMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMS 79 Query: 61 SRS-SEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEIDTPIVQRYDPSSSPIMS 119 S S S G + F T IA V++K+ E+ + SSS +M Sbjct: 80 STSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMV 139 Query: 120 VVFESNSMSLAQ--LSSYVDKKIVPQLKTVSGVGNVNLLGDAKRQIRIKVHPEQLQSYGI 177 F S++ Q +S YV + L ++GVG+V L G A+ +RI + + L Y + Sbjct: 140 AGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-AQYAMRIWLDADLLNKYKL 198 Query: 178 GIDQVINTLKNENIEVPAGTL------QQKNSELVVQIQSKVIHPLGFGDLVI-ANKNGS 230 VIN LK +N ++ AG L + + Q++ +P FG + + N +GS Sbjct: 199 TPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGS 258 Query: 231 PIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKAQMP 290 + LK VA VE A NG+ A + I ++ AN + L +L+ P Sbjct: 259 VVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFP 318 Query: 291 AGLNYKVVADSSKGIRASIKDVVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLG 350 G+ D++ ++ SI +VV+T+ E +L L++ LFL + R+T+I + +P+ LLG Sbjct: 319 QGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLG 378 Query: 351 TLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVVRENIVRH-TELGKDHVTAALDGTKEI 409 T + AFG+SIN +T+ + L+IGLL+DDAIVV EN+ R E A +I Sbjct: 379 TFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQI 438 Query: 410 GLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKD 469 A++ + + AVF+P+AF GG G + QF +T+ +A+ +S+ ++ L P L A Sbjct: 439 QGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498 Query: 470 PVKKKESRLQR-FFNYISNLLDGLTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMI 528 PV + + FF + + D + Y + L ++I + + + L + Sbjct: 499 PVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRL 558 Query: 529 GTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQVDQII--RQFPDVVSTYGVVNSEVDS 586 + F+P D+G + P ++ E TQ L QV + +V S + V Sbjct: 559 PSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSG 618 Query: 587 GKNHAGLG-VTLKPKQERSADLTTLNNEFRDRLQSVAGIRVTSVAAAQDS------VSGG 639 +AG+ V+LKP +ER+ D + + IR V + G Sbjct: 619 QAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATG 678 Query: 640 QKPIMISIKGSDLNELQKISDRFMAEMEK-IDGVVDLESSFKEPKPTLGVHINRVLASDL 698 +I G + L + ++ + + +V + + E + +++ A L Sbjct: 679 FDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQAL 738 Query: 699 GLSVSQIANAIRPLIAGDNVTTWEDRDGETYDVNIRLNENKRVLPQDVQNLYLNSNKTNA 758 G+S+S I I + G V + D G + ++ + R+LP+DV LY+ +A Sbjct: 739 GVSLSDINQTISTALGGTYVNDFID-RGRVKKLYVQADAKFRMLPEDVDKLYV----RSA 793 Query: 759 NGQNILVPLSAVATTQEKLGASQINRRDLEREVLIEAN-TSGRPSGDIGQDIDKMQKAFK 817 NG+ +VP SA T+ G+ ++ R + + I+ G SGD ++ + K Sbjct: 794 NGE--MVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLAS--K 849 Query: 818 LPAGYTFDTQGANADMAESAGYALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLI 877 LPAG +D G + S A + +S V +++ L + + S+ P ++M +PL ++ Sbjct: 850 LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIV 909 Query: 878 GVFLALFLFRSTLNLFSIIGIIMLMGLVTKNAILLIDFIKKAME-DGISRYDAILQAGKT 936 GV LA LF +++ ++G++ +GL KNAIL+++F K ME +G +A L A + Sbjct: 910 GVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRM 969 Query: 937 RLRPILMTTSAMVMGMVPLALGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLD 996 RLRPILMT+ A ++G++PLA+ G G + V+GG++++TLL + VPV F + Sbjct: 970 RLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 2e-08 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 1011 RILCLDNDETILEGMSSLLGRWGYQVFKATEPEQALEIIQKENIQVWLIDQHLNHNQLGV 1070 IL D+D I ++ L R GY V + I + + + D + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD-ENAF 63 Query: 1071 DFITQNRQED--VPVALITADSHPELPQQ 1097 D + + ++ +PV +++A + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIK 92
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 1e-13 Identities = 20/75 (26%), Positives = 36/75 (48%) Query: 5 AEPDLVLLDLNLPGASGFSALVYVRAQYPSIPIIVVSAHEEASIIQRAIAHGAMGYIPKS 64 + DLV+ D+ +P + F L ++ P +P++V+SA +A GA Y+PK Sbjct: 46 GDGDLVVTDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKP 105 Query: 65 AHPSHIGEAIRQVLD 79 + + I + L Sbjct: 106 FDLTELIGIIGRALA 120
>NAFLGMOTY#Sodium-type flagellar protein MotY precursor signature. Length = 293 Score = 28.2 bits (62), Expect = 0.042 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 8 LAKTEKLKVIAAILPGPWKPALAAKQLATIDYLTQ------GRIAINVVSGWFRGEFDAI 61 + +T + +I+ +P PW+P A ++ + + Q G+ A ++S +G + Sbjct: 80 MGETRNVSLIS--MPPPWRPGEHADRITNLKFFKQFDGYVGGQTAWGILSELEKGRYPTF 137 Query: 62 G-EEWPEHDER 71 ++W D+R Sbjct: 138 SYQDWQSRDQR 148
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 55.4 bits (133), Expect = 1e-11 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 13/163 (7%) Query: 2 KQALLVIDVQNDYFKNGKMELVGP-DQALDKIKQLEQYFNEKDLPIIYVQH---INPPQA 57 + LL+ D+Q +YF + P + I++L+ + +P++Y NP Sbjct: 30 RAVLLIHDMQ-NYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDR 88 Query: 58 SFF--------QENTEGVLLHPELSAGSDSLIVTKHYPNSFLETNLKELLKAHQIEQLVI 109 + + EL+ D L++TK ++F TNL E+++ +QL+I Sbjct: 89 ALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLII 148 Query: 110 TGMMTHICIDSGTRTAKELGYQPILIGDATATRDLSHNGKTVK 152 TG+ HI A + +GDA A L + ++ Sbjct: 149 TGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALE 191
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.1 bits (184), Expect = 6e-18 Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 3/194 (1%) Query: 15 KNFKNKVAAITGAGSGIGQQLAILLAKQGCHLSLSDINEKGLEKTVELLKPYSNITVTTK 74 K + K+A ITGA GIG+ +A LA QG H++ D N + LEK V LK + Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEAR-HAEAF 62 Query: 75 KLDVSDREAVKQWAQETVQDHGCVNLIFNNAGVALGSTVEGATYEDLEWIVGINFWGVVY 134 DV D A+ + ++ G ++++ N AGV + + E+ E +N GV Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 135 GTKEFLPFIKQTQDGHIINISSLFGLTAQPTQSGYNATKFAVRGFTESLRQELDIEKCGV 194 ++ ++ + G I+ + S + + + Y ++K A FT+ L EL + + Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL--AEYNI 180 Query: 195 SSLCVHPGGIRTNI 208 V PG T++ Sbjct: 181 RCNIVSPGSTETDM 194
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 41.7 bits (98), Expect = 2e-08 Identities = 13/49 (26%), Positives = 24/49 (48%) Query: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLD 54 IL+ DD+ IR +++ +L AG+ +A + I L++ D Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTD 54
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 32.5 bits (74), Expect = 5e-04 Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 1 MLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRANAL 46 +++A+ ++ + GA DY+ KPF EL+ I L Sbjct: 80 VMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRR 125
>PF06580#Sensor histidine kinase Length = 349 Score = 31.0 bits (70), Expect = 0.009 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 25/103 (24%) Query: 289 LITNAIKY----TPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDR 344 L+ N IK+ P+GG I + D V++TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK----------------- 305 Query: 345 SRQTGGTGLGLAIVKH---VLMQHGAYLDVQSKENEGSTFTAV 384 TG GL V+ +L A + + K+ + + + Sbjct: 306 -NTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLI 347
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.4 bits (110), Expect = 1e-07 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 2/157 (1%) Query: 32 LPNIANDLGISIPTAGMLITGYALGVMLGAPFMTLRFGGFARRNALIFLMAIFTVGNLIA 91 LP+IAND + + T + L +G + L+F + I G++I Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 92 AFSPNYMSLL-GARLITSLNHGAFFGIGSVVAASIVPAHKQASAVATMFMGLTIANIGGV 150 ++ SLL AR I AF + VV A +P + A + + + G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 151 PLATWVGQNIGWRMSFLAISVLGIITMLALWKALPQG 187 + + I W L I ++ IIT+ L K L + Sbjct: 157 AIGGMIAHYIHWSYLLL-IPMITIITVPFLMKLLKKE 192
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 240 bits (614), Expect = 6e-72 Identities = 109/493 (22%), Positives = 224/493 (45%), Gaps = 29/493 (5%) Query: 17 VGIFVLSVLMFKMVPQQFFPPSNRAEILVDLKLEEGASLTATEQAVKKVEQFLSKQKGID 76 I V++F +P F P ++ L ++L GA+ T++ + +V + K + + Sbjct: 545 ALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKAN 604 Query: 77 NYVAYVGTGSPRFYLPLDQQLPQASFAQFVVLASSLDDRDEIRRSLETQIKQL---LPQV 133 + G + Q Q + FV L ++R+ S E I + L ++ Sbjct: 605 VESVFTVNG----FSFSGQ--AQNAGMAFVSL-KPWEERNGDENSAEAVIHRAKMELGKI 657 Query: 134 RTRVSLLENGPPV-------GYPLQYRVSGEDLNLVRKEA-QQVARVISENPNT-TNVHL 184 R + N P + G+ + + +A Q+ + +++P + +V Sbjct: 658 RDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRP 717 Query: 185 DWGEPSKIISIQIDQDRARQMGVSSLDLANFLNASITGSAIEQYREKRELIEIRLRGDKA 244 + E + +++DQ++A+ +GVS D+ ++ ++ G+ + + ++ + ++ ++ D Sbjct: 718 NGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 245 ERVEVASLASLAVPTANGTTVPLAQIAKIEYKFEDGLIWHRNRLPTITVRADIRTNLQPA 304 R+ + L V +ANG VP + + + + N LP++ ++ P Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQG----EAAPG 833 Query: 305 TVVGELAESMDKLRAELPSGYLIEVGGTVEESARGQSSVNAGMPLFLAVVMTLLMIQLKS 364 T G+ M+ L ++LP+G + G + + A + + VV L +S Sbjct: 834 TSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYES 893 Query: 365 LSRATIVFLTAPLGLIGVVLFLLLFNKPFGFVAMLGTIALSGMIMRNSLILIDQIEQ-DR 423 S V L PLG++GV+L LFN+ M+G + G+ +N++++++ + Sbjct: 894 WSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLME 953 Query: 424 QAGHPTWEAIIDATVRRFRPIILTALAAVLAMIPLSRSIFFG-----PMAVAIMGGLIVA 478 + G EA + A R RPI++T+LA +L ++PL+ S G + + +MGG++ A Sbjct: 954 KEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSA 1013 Query: 479 TLLTLFFLPALYA 491 TLL +FF+P + Sbjct: 1014 TLLAIFFVPVFFV 1026 Score = 89.5 bits (222), Expect = 7e-21 Identities = 78/519 (15%), Positives = 180/519 (34%), Gaps = 45/519 (8%) Query: 1 MVEFCVTYRKTVIATTVGIFVLSVLMFKMVPQQFFPPSNRAEILVDLKLEEGASLTATEQ 60 M F + + + + L +P +P + V + T + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 AVKKVEQFLSKQKGIDN---YVAYVGTGSPRFYLPLDQQLPQASFAQFVVLASSLDDRDE 117 + +EQ ++ + G+ + A + + Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIA--------------QVQ 106 Query: 118 IRRSLETQIKQLLPQVRTRVSLLENGPPVGYPLQYRVSGEDLNLVRKE-----AQQVARV 172 ++ L+ LLPQ + + Y + ++ + + A V Sbjct: 107 VQNKLQ-LATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDT 165 Query: 173 ISENPNTTNVHLDWGEPSKIISIQIDQDRARQMGVSSLDLANFL---NASITGSAI--EQ 227 +S +V L + + I +D D + ++ +D+ N L N I + Sbjct: 166 LSRLNGVGDVQLFGAQ--YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTP 223 Query: 228 YREKREL-IEIRLRGDKAERVEVASLASLAVPTANGTTVPLAQIAKIEYKFEDGLIWHR- 285 ++L I + E + ++G+ V L +A++E E+ + R Sbjct: 224 ALPGQQLNASIIAQTRFKNPEEFGKV--TLRVNSDGSVVRLKDVARVELGGENYNVIARI 281 Query: 286 NRLPTITVRADIRTNLQPATVVGELAESMDKLRAELPSGYLIEVGGTVEESARGQSSVNA 345 N P + + T + + +L+ P G + + + Q S++ Sbjct: 282 NGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLY--PYDTTPFVQLSIHE 339 Query: 346 GM-PLFLAVVMTLLMIQ--LKSLSRATIVFLTAPLGLIGVVLFLLLFNKPFGFVAMLGTI 402 + LF A+++ L++ L+++ I + P+ L+G L F + M G + Sbjct: 340 VVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399 Query: 403 ALSGMIMRNSLILIDQIEQDRQAGH-PTWEAIIDATVRRFRPIILTALAAVLAMIPL--- 458 G+++ +++++++ +E+ P EA + + ++ A+ IP+ Sbjct: 400 LAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFF 459 Query: 459 --SRSIFFGPMAVAIMGGLIVATLLTLFFLPALYAAWFK 495 S + ++ I+ + ++ L+ L PAL A K Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 218 bits (557), Expect = 1e-64 Identities = 113/468 (24%), Positives = 196/468 (41%), Gaps = 21/468 (4%) Query: 2 VVQTYWPGATAKEVSTLVTDRIEKELMTTGQYDKIMAYSRPGESMVTFVAKDSLTSAQIP 61 V +PGA A+ V VT IE+ + + + S S+ + S T I Sbjct: 44 SVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIA 103 Query: 62 DVWYNVRKKVNDIRHELPSGVQGP-FFNDEFGDTFGNIYVLTGKDFDYAL--LKEYADR- 117 V V+ K+ LP VQ ++ ++ + + + +Y Sbjct: 104 QV--QVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASN 161 Query: 118 LQLQLQRVKDVGKVELIGLQDQKIWIEISNTKAVQLGIPVSAIQEALQKQNSMASAGFFE 177 ++ L R+ VG V+L G Q + I + + + + L+ QN +AG Sbjct: 162 VKDTLSRLNGVGDVQLFGAQYA-MRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLG 220 Query: 178 TGTD------RIQIRVSGQLQSVDDIKKMPLLVGD--KTIQLGDVADVYRGFSQPAQPRM 229 I + ++ ++ K+ L V ++L DVA V G + Sbjct: 221 GTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGG-ENYNVIA 279 Query: 230 RFMGDNGIGIAVSMRKGGDIIALGKNLETEFAQLQKTLPLGMKLQKVSDQPVAVQRSIHE 289 R G G+ + + G + + K ++ + A+LQ P GMK+ D VQ SIHE Sbjct: 280 RINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHE 339 Query: 290 FVKVLAEAVIIVLLVSFFSLG-FRTGLVVAFSIPLVLAMTFAGMNLFDVGLHKISLGALI 348 VK L EA+++V LV + L R L+ ++P+VL TFA + F ++ +++ ++ Sbjct: 340 VVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399 Query: 349 LALGLLVDDAIIAVEMMA-IKMEQGYSRIKAAGFAWKTTAFPMLTGTLITAAGFY-LLPA 406 LA+GLLVDDAI+ VE + + ME +A + ++ ++ +A F + Sbjct: 400 LAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFF 459 Query: 407 QSSTGEYTRSIFQVVTIALLVSWVAAVLFVPYLGENYYLILPRPVIKH 454 STG R + A+ +S + A++ P L L+ P H Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPAL--CATLLKPVSAEHH 505 Score = 84.5 bits (209), Expect = 2e-19 Identities = 63/356 (17%), Positives = 134/356 (37%), Gaps = 26/356 (7%) Query: 106 FDYALLKEYADRL-QLQLQRVKDVGKVELIGLQDQ-KIWIEISNTKAVQLGIPVSAIQEA 163 + L + ++L + Q + V GL+D + +E+ KA LG+ +S I + Sbjct: 689 LGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQT 748 Query: 164 LQKQNSMASAGFFETGTDRIQIRVSGQ---LQSVDDIKKMPLLVGD-KTIQLGDVADVYR 219 + F ++ V +D+ K+ + + + + + Sbjct: 749 ISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHW 808 Query: 220 GFSQPAQPRMRFMGDNGIGIAVSMRKG---GDIIALGKNLETEFAQLQKTLPLGMKLQKV 276 + P R+ G + I G GD +AL +NL ++ LP G+ Sbjct: 809 VYGSPRL--ERYNGLPSMEIQGEAAPGTSSGDAMALMENLASK-------LPAGIGYD-W 858 Query: 277 SDQPVAVQRSIHEFVKVLAEAVIIVLLVSFFSL-GFRTGLVVAFSIPLVLAMTFAGMNLF 335 + + S ++ ++A + ++V L + + V +PL + LF Sbjct: 859 TGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF 918 Query: 336 DVGLHKISLGALILALGLLVDDAIIAVEMM-AIKMEQGYSRIKAAGFAWKTTAFPMLTGT 394 + + L+ +GL +AI+ VE + ++G ++A A + P+L + Sbjct: 919 NQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTS 978 Query: 395 LITAAGFYLLPAQSSTG-EYTRSIFQVVTIALLVSWVAAVLFVPYLGENYYLILPR 449 L G L + G ++ V ++ + + A+ FVP ++++ R Sbjct: 979 LAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF----FVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.3 bits (102), Expect = 8e-07 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 18/176 (10%) Query: 31 VGGQVTARYVDVGDRVRVGQVLAKLDVADAQLQLNAAKAQLENAQA------AAKTASDE 84 V V G+ VR G VL KL A+ ++ L A+ + + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 85 LKRFQQLLPINAVSRS--------QYDTVKNQYDAAQAALQQARSNYE-VSANQTGYNQL 135 K + LP ++ +K Q+ Q Q N + A + Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLAR 222 Query: 136 VSNKNGVITARNIEIG---QVVAAGQAAYQLAIDGEREVVIGVPEQAVSEIKVGQA 188 ++ + + ++ A ++ E + V V E V + ++ Q Sbjct: 223 INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQI 278
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 44.2 bits (104), Expect = 5e-08 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 7/148 (4%) Query: 1 MNLIAQEAGVTKLTVYNHFQDKANLFICAITETCEETLGTKPFEL--DASADFYQTLYIV 58 + IA+ AGVT+ +Y HF+DK++LF I E E +G E D L + Sbjct: 34 LGEIAKAAGVTRGAIYWHFKDKSDLFS-EIWELSESNIGELELEYQAKFPGDPLSVLREI 92 Query: 59 CSRALQIIYSPEALKLEHVL---FELAAEQSPLALQFFNASHTRLQNQLVEFFQKAAQLG 115 L+ + E +L + + + Q +++ + + + Sbjct: 93 LIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAK 152 Query: 116 FIQAD-DPLYQTELLLTLLLGVRHHKVL 142 + AD ++ + G+ + + Sbjct: 153 MLPADLMTRRAAIIMRGYISGLMENWLF 180