>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 60.2 bits (146), Expect = 3e-12 Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 28/221 (12%) Query: 78 IDQARYALAERL---AEATLAQRRATLAQAKREYARNLQLGNLVASEQVEESRTRVEQGE 134 I + E A L ++ L Q + E + LV E ++ Q Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTT 308 Query: 135 ASVADAQVSLDTAKLNLQRTTIVSPVDGYLND-RAPRVGEYVPAGRAVLSVV-DRNSFRV 192 ++ + L + Q + I +PV + + G V ++ +V + ++ V Sbjct: 309 DNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEV 368 Query: 193 DGYFEETKLRGIHIGQPVDIIVMGEPHA----LRGHVQSIVAAIEDRDRTQGANLLPNVN 248 + + I++GQ I V P+ L G V++I + R Sbjct: 369 TALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLG--------- 419 Query: 249 PAFSWVRLAQRVPVRVVLDEVPDD---FRMIAGRTATVSMR 286 L V + + + + + +G T ++ Sbjct: 420 -------LVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIK 453 Score = 46.0 bits (109), Expect = 1e-07 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 50 VAPDVSGLITSVQVADNQEVKRGQVLFVIDQARYALAERLAEATLAQRRATLAQAKREYA 109 + P + ++ + V + + V++G VL + AEA + +++L QA+ E Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALG-------AEADTLKTQSSLLQARLEQT 151 Query: 110 RNLQLGNLVASEQVEESRTRVEQGEASVADAQVSLDTAKLNLQRTT 155 R L + ++ E + E +V++ +V T+ + Q +T Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFST 197
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.6 bits (100), Expect = 2e-06 Identities = 63/394 (15%), Positives = 136/394 (34%), Gaps = 55/394 (13%) Query: 27 LDTQMFSLVIPALLATWSIGKGQAGLIGGATLVSGALGGLLAGAIADRYGRVRALQITVC 86 L+ + ++ +P + ++ + A +++ ++G + G ++D+ G R L + Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 87 WFSAFTFLSAFAQNFEQLLVL-KALQGLGFGGEWTAGAVLLAETVGARHRGKAMGVVQSA 145 + + +F LL++ + +QG G V++A + +RGKA G++ S Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 146 WGFGWGAAVLLYMIVFAWLPSEWAWRVLFAIGALPALLVLYIRRAISEPPRATPAPAHGD 205 G G + ++ ++ W++ +L P + ++ + + + H D Sbjct: 148 VAMGEGVGPAIGGMIAHYI--HWSYLLLI-----PMITIITVPFLMKLLKKEVRIKGHFD 200 Query: 206 DAPTV----------------------------GIFDRSVLRTT--------------VV 223 + IF + + + T ++ Sbjct: 201 IKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMI 260 Query: 224 GGLIGVGAHGGYHAITIWLPTYLKTERHLSVLGTGT-YLAVVIVAFICGCFLSAYLQDRI 282 G L G G +P +K LS G+ + ++ I ++ L DR Sbjct: 261 GVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRR 320 Query: 283 GRRRNVMLFAACCAVMVNLYVFLPLNDVAMLLLGFPLGLCSAGIPATLGTLF--NELYPQ 340 G + + +V FL + + L T+ + + L Q Sbjct: 321 GPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQ 380 Query: 341 NVRGRGVGFCYNFGRIVSAGFPVLVGRMGESLPL 374 G G+ NF +S G + + S+PL Sbjct: 381 EA-GAGMSL-LNFTSFLSEGTGIAIVGGLLSIPL 412
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.1 bits (73), Expect = 0.004 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 19/134 (14%) Query: 76 LVGLYADRHGRKAALTKSVLAMCAGSMLIAVTPGYATIGMLAPALLVAARLLQGLSMGGE 135 ++G +DR GR+ L S+ ++A P +L R++ G++ G Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP--------FLWVLYIGRIVAGIT-GAT 112 Query: 136 YGTSATYLSEIAPPNRRGFYVGFLQVSVVAGQLVALGLMLAMQRIFAGTHDIERWAWRIP 195 + Y+++I + R + GF+ G + L M P Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP----------HAP 162 Query: 196 FFVGGVLALFALYM 209 FF L Sbjct: 163 FFAAAALNGLNFLT 176
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 40.7 bits (95), Expect = 4e-06 Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 6/198 (3%) Query: 159 YGAFFATG-ILVMAFMAIGLNSTTTAIAALRERNTFKLYVCFPVSRGVFLAALIVARMAM 217 Y AF A G + A A + A + + T++ + + L +++ MA Sbjct: 65 YTAFLAAGMVATSAMTAATFETIYAAFGRMEGQRTWEAMLYTQLR----LGDIVLGEMAW 120 Query: 218 MALSALVLLTVARVAFGIALPIATPDGLRALPIVLLGAAMVLSIGVLLASRARSLAAAEL 277 A A + V L ALP++ L S+G+++ + A S Sbjct: 121 AATKAALAGAGIGVVAAALGYTQWLSLLYALPVIALTGLAFASLGMVVTALAPSYDYFIF 180 Query: 278 ACNVTYYPLLFFSDLTIPMHDAPAWLKAGLAFLPTNQFAVALRGALVDGAPYAQLAPQLL 337 + P+LF S P+ P + FLP + +R ++ P + + Sbjct: 181 YQTLVITPILFLSGAVFPVDQLPIVFQTAARFLPLSHSIDLIRPIMLGH-PVVDVCQHVG 239 Query: 338 GMTACTALFLFAAVRLFR 355 + + F + L R Sbjct: 240 ALCIYIVIPFFLSTALLR 257
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.016 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 3/85 (3%) Query: 38 MIYALLPVWQSEFGLD---FAALAILRGIYAGTMATLQLSAGRLAQRLGSRTTLALGTLL 94 +I +LP + A IL +YA G L+ R G R L + Sbjct: 23 LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAG 82 Query: 95 AALGYAIAGLSGGLLGLGVALAISG 119 AA+ YAI + L L + ++G Sbjct: 83 AAVDYAIMATAPFLWVLYIGRIVAG 107
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 73.7 bits (181), Expect = 1e-16 Identities = 93/388 (23%), Positives = 143/388 (36%), Gaps = 68/388 (17%) Query: 9 SVIAVAAFAASSAAMAQSSVTLYGMLDAGIGYTSNINGHS-----RFGLDGGAAGSNKWG 63 S+IA+ A AAMA VTLYG + AG+ + ++ + G +K G Sbjct: 4 SLIALTLAALPVAAMAD--VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIG 61 Query: 64 LRGQEDLGGGLQAVFKIENGFNIGTGGIGGQGPIGTTRSLFNRQAYVGLASEQYGALRMG 123 +GQEDLG GL+A++++E +I GT NRQ+++GL +G LR+G Sbjct: 62 FKGQEDLGNGLKAIWQVEQKASIA----------GTDSGWGNRQSFIGLKGG-FGKLRVG 110 Query: 124 RQLDAVTEMVQALTGDVISASTFSTPGDVDNNDNTTNQNNAVKYISPIIHGFQAEGAYSF 183 R + + TGD+ + S V+ + +V+Y SP G Y+ Sbjct: 111 RLNSVLKD-----TGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYAL 165 Query: 184 GGVAGATGSGQSWSAAATYAQGGLTVAGGYFRAVNQGENGWLNATAQPSFGGALGYPSSG 243 AG + +S+ A Y GG V G + +N GY Sbjct: 166 NDNAGR-HNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGY---D 221 Query: 244 YNGGNAFKSAGIAQIAAQYQVGPYTAGLRYSNAQYHGNDGQPSIHFNVLGALLQYR---V 300 + A +A Q Q N+Q + A L YR V Sbjct: 222 NDALYAS-------VAVQQQDAKLVEENYSHNSQ------------TEVAATLAYRFGNV 262 Query: 301 TPALSLATGYTYVYGSAATPKQAAEGRTMASINQVSLGATYSLSKSTALYAMGAYVHAKG 360 TP +S A G+ + + +QV +GA Y SK T+ ++ Sbjct: 263 TPRVSYAHGFKGSFDATNYN---------NDYDQVVVGAEYDFSKRTSALVSAGWL---- 309 Query: 361 AQASAADFGNTSSGGNQVQVNIGMFHGF 388 G S +G+ H F Sbjct: 310 ------QEGKGESKFVSTAGGVGLRHKF 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 44.8 bits (106), Expect = 3e-07 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%) Query: 4 ILVASDDTARLTQIARLVADCGRYRTTRATGRPSQIEHRTDGLDAFDILLVDGTSLEPSE 63 ILVA DD A T + + ++ G Y + + G D+++ D + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAG-YDVRITSNAATLWRWIAAG--DGDLVVTDVVMPDENA 62 Query: 64 LPAIERICRAHAGLTCILVTADASPHVLLDAMRAGARDVLQWPLDPQALGHALGRAVAQS 123 + RI +A L ++++A + + A GA D L P D L +GRA+A+ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 124 TRR 126 RR Sbjct: 123 KRR 125
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (298), Expect = 2e-34 Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 12/256 (4%) Query: 1 MNA--LAGKVALVTGGATLIGAAVAQDLSRAGACVAILDLDADNGARVAASLGERALF-- 56 MNA + GK+A +TG A IG AVA+ L+ GA +A +D + + +V +SL A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 57 -LALDITDDRAIERAVAAIVERFGAIDVLVNLACSYVDNGIHA-TRNDWLAAMDVNVVSA 114 D+ D AI+ A I G ID+LVN+A IH+ + +W A VN Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 115 AMLAKAVHPHMARRGGGAIVNFSSISAQCAQTGRWLYPTSKAAIRQLTRSMAMDLAPDRI 174 +++V +M R G+IV S A +T Y +SKAA T+ + ++LA I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 175 RVNSVSPGWTWSRVMDEMTRGDRAKTDRV---AAPFHL---LGRVGDPSEVAQVVTFLCS 228 R N VSPG T + + + + + F L ++ PS++A V FL S Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVS 240 Query: 229 DAASFVTGADYAVDGG 244 A +T + VDGG Sbjct: 241 GQAGHITMHNLCVDGG 256
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 0.001 Identities = 59/253 (23%), Positives = 91/253 (35%), Gaps = 28/253 (11%) Query: 2782 STVNLGGNNLTLGGSGSGTYDGTIAGAGGSLTLGGTGTETL--NGTNTYTGGTSLTGGGT 2839 S +L G+ S +G TI G SL + + +G + G GT Sbjct: 338 SAGSLIGSKTDYSWSSNGK-TSTITGGEKSLNVDLADGKDKPNHGKSVT-----FEGSGT 391 Query: 2840 LIAGNGSALGSGALNTSGAGGTLGTSVAGTTLGNAVNLGAGSTLT--VGGANNLGLGGAI 2897 L N G+G L G GTS T G V++ G T+T V Sbjct: 392 LTLNNNIDQGAGGLFFEGDYEVKGTSDNTTWKGAGVSVAEGKTVTWKVHNPQY------- 444 Query: 2898 SGSGNLAVNGPSTTTLTGASSYTGNTTIGNGSTLVVGASGSLSGGSA---VDLAGAGATL 2954 LA G T + G G+ +G+G T+++ + SG A V + +TL Sbjct: 445 ---DRLAKIGKGTLIVEGTGDNKGSLKVGDG-TVILKQQTNGSGQHAFASVGIVSGRSTL 500 Query: 2955 DLSAATTPQSTGALSGVAGSTVNLGGNALTLGGSANGTFGGTIAGTGGSLTLSGTGTETL 3014 L+ G G ++L GN+LT N G + ++ T+ Sbjct: 501 VLNDDKQVDPNSIYFGFRGGRLDLNGNSLTFDHIRNIDDGARLVNH----NMTNASNITI 556 Query: 3015 NGTNTYTGGTTLS 3027 G + T T++ Sbjct: 557 TGESLITDPNTIT 569 Score = 32.7 bits (74), Expect = 0.048 Identities = 148/719 (20%), Positives = 207/719 (28%), Gaps = 101/719 (14%) Query: 2811 SLTLGGTGTETLNGTNTYTGGTSLTGGGTLIAGNGSALGSGALNTSGAGGTLGTSVAGTT 2870 + + T N N Y L G I G N G L Sbjct: 181 EASTASSDAGTYNDQNKYPAFVRLGSGSQFIYKKGDNYSLILNNHEVGGNNL------KL 234 Query: 2871 LGNAVNLG-AGSTLTVGGANNLGLGGAISGSGNLAVNGPSTTTLTGASSYTGNTTIGNGS 2929 +G+A G AG+ V NN G + + G S T Sbjct: 235 VGDAYTYGIAGTPYKVNHENN--------GLIGFGNSKEEHSDPKGILSQDPLTNYAVL- 285 Query: 2930 TLVVGASGS------------LSGGSAVDLAGAGATLDLSAATTPQSTGALSGVAGSTVN 2977 G SGS L GS AG S + Sbjct: 286 ----GDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSWQEWNIYKSQFTKDVLNKDSAGS 341 Query: 2978 LGGNALTLGGSANGTFGGTIAGTGGSLTLSGTGTETLNGTNTYTGGTTLSGGGTLLAGNG 3037 L G+ S+NG TI G SL + + + T G GTL N Sbjct: 342 LIGSKTDYSWSSNGK-TSTITGGEKSLNVDLADGKDKP---NHGKSVTFEGSGTLTLNNN 397 Query: 3038 SALGTGALTTTGAGGSLGTSVAGTTLTNAIGLGAGSTLTVGGANNLGLGGAIVGSGNLAV 3097 G G L G GTS T + + G T+T N A +G G L V Sbjct: 398 IDQGAGGLFFEGDYEVKGTSDNTTWKGAGVSVAEGKTVTWKVHNPQYDRLAKIGKGTLIV 457 Query: 3098 NGPSTTTLTGASSYTGNTTIGNGSTL--AVGAGGSLSAGSAVDLSGTGATLDLSAATTPQ 3155 G G+ +G+G+ + G A ++V + +TL L+ Sbjct: 458 EGTGDNK--------GSLKVGDGTVILKQQTNGSGQHAFASVGIVSGRSTLVLNDDKQVD 509 Query: 3156 TTGAVSGVSGSTVNLGSNTLTLGGAGNGTYGGTVAGTGGLTLSGSGTQTLTGTNTYTGAT 3215 G G ++L N+LT N G + ++ + T+TG + T Sbjct: 510 PNSIYFGFRGGRLDLNGNSLTFDHIRNIDDGARLVNH---NMTNASNITITGESLITDPN 566 Query: 3216 TI------------------------------NSGTLAIGAGGSLSGSSPLNLAGAGATF 3245 TI N A+ G S P N + + Sbjct: 567 TITPYNIDAPDEDNPYAFRRIKDGGQLYLNLENYTYYALRKGASTRSELPKNSGESNENW 626 Query: 3246 DVSGATTPQTTTALSGVAGSTVNLGGNTLTLGGSGSGTYGGTIAGTGGSLTLGGTGTETL 3305 G T+ + A V N + G +G +G G+L + G ++ Sbjct: 627 LYMGKTSDE--------AKRNVMNHINNERMNGF-NGYFGEEEGKNNGNLNVTFKG-KSE 676 Query: 3306 TGANTYSGGTNLTGGGTLVAGNNTALGTGVLNA-SGAGGTLAAGTPGTTLNNTVNLG--- 3361 +GGTNL G T+ G G +A AG + P NN V + Sbjct: 677 QNRFLLTGGTNLNGDLTVEKGTLFLSGRPTPHARDIAGISSTKKDPHFAENNEVVVEDDW 736 Query: 3362 TGSTLTVGGANNLGLGGAISGGGTLAVNGPATTTLSGANTYTGGTSVTGGGTLVAGTPTA 3421 N G SG + T + T T V T Sbjct: 737 INRNFKATTMNVTGNASLYSGRNVANITSNITASNKAQVHIGYKTGDTVC---VRSDYTG 793 Query: 3422 LGSGTLSVGGNGGTLGTSVAGTTLGNAVNLGAGSTLTVGGANNLGLSGPISGGGNLAVS 3480 + T + S T L VNL + +G AN L G I GN V Sbjct: 794 YVTCTTDKLSDKAL--NSFNPTNLRGNVNLTESANFVLGKAN---LFGTIQSRGNSQVR 847
>FLAGELLIN#Flagellin signature. Length = 507 Score = 35.0 bits (80), Expect = 0.002 Identities = 39/317 (12%), Positives = 64/317 (20%), Gaps = 2/317 (0%) Query: 663 VANSATGAVATLAGAAGGLGGVVGAVGNSATGAVGTLAGAVGGVGGGATGGLGSLGGVVG 722 V+N + + VGA G V Sbjct: 125 VSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVGD 184 Query: 723 TVANSATGAVGTLAGAVSGVGGGATGGLGGLGGVVGAVGNTATGAVGTLAGAVGGAGGAT 782 ++ + + Sbjct: 185 LKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENN 244 Query: 783 GGLGGIVGTVANSATDAAGTLAGAAGGLGGVVGAVGNTATGAVGTLAGAAGGAGGVAGGL 842 + T + + T A +AGA G T + T G G Sbjct: 245 TAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTIN 304 Query: 843 GGIVGTVANSATGALGTLAGAAG--GVGGATGGLGGIVGTVANSATGAVGTLAGAAGGVG 900 G V T + A T + G + + A Sbjct: 305 GEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAV 364 Query: 901 GATGGLGGIVGTVANSATGAVGTLAGAAGGVAGGATGGLGSLGGVVGTVANSATGAVGTL 960 + +A G TLAG + A+G + S + ++ Sbjct: 365 KGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASI 424 Query: 961 AGAAGGIGGVTGGLGGI 977 A + V LG I Sbjct: 425 DSALSKVDAVRSSLGAI 441
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 24.2 bits (52), Expect = 0.042 Identities = 8/25 (32%), Positives = 11/25 (44%) Query: 29 GKWAVATPEGWRPVQPGDWIVRDEG 53 +W P W P G W++ EG Sbjct: 68 EQWLGDKPVSWSPTPDGIWLMNAEG 92
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.5 bits (165), Expect = 3e-15 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 29/190 (15%) Query: 3 IRILLVEDDAPLSALIADYLRQHHYQVDTLFDGAGAVPAIVANRPDLVLLDVNLPGKDGF 62 IL+ +DDA + ++ L + Y V + A I A DLV+ DV +P ++ F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 EICREARMQYDGI-VIMVTGRDEPFDELLGLELGADDFLRKPVEPRLLLARIKAQL--RR 119 ++ + + V++++ ++ + E GA D+L KP + L+ I L + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 TRVPAGEPAPDSPQRYVFGKFSIDRADRRVHLPDGSMPRLTSTEFDLLWALVCRAGEVVS 179 R E V G + + R + Sbjct: 124 RRPSKLEDDSQDGMPLV-----------------GRSAAMQE---------IYRVLARLM 157 Query: 180 REDLTLLLRG 189 + DLTL++ G Sbjct: 158 QTDLTLMITG 167
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.2 bits (81), Expect = 6e-04 Identities = 9/105 (8%), Positives = 31/105 (29%), Gaps = 7/105 (6%) Query: 201 AAGAQTSAAIASRDDALLSLEAEVAQTYLQLRGAQAQRALADDLQRAQRELLDLTREQ-- 258 + + + + + + + Q L L +A+R L + + + Sbjct: 179 VSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLD 238 Query: 259 -----AAHGLASDLDVRSADARLAQIRAQLPQFDQQIVLLRNGLA 298 + V + + + +L + Q+ + + + Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEIL 283
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 101 bits (254), Expect = 3e-25 Identities = 73/336 (21%), Positives = 144/336 (42%), Gaps = 20/336 (5%) Query: 24 IAIVVTLAAFMEVLDTTIVNVALPHIAGTMSASYDEATWTLTSYLVANGIVLPISGFLGR 83 I I + + +F VL+ ++NV+LP IA + W T++++ I + G L Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 84 LLGRKRYFLLCIAAFTVCSFLCGVATNLGELIVF-RVLQGLFGGGLQPNQQSIILDTF-P 141 LG KR L I S + V + L++ R +QG G P +++ + P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGA-GAAAFPALVMVVVARYIP 133 Query: 142 PEQRNRAFSISAIAIVVAPVLGPTLGGWITDHFSWRWVFLLNVPIGALTVLAVMQLVEDP 201 E R +AF + + + +GP +GG I + W +LL +P+ +T++ V L++ Sbjct: 134 KENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPM--ITIITVPFLMKLL 189 Query: 202 PWRRDAERGISIDYIGIGLIAIGLGCLQVMLDRGEDEDWFGSNFIRIFAVLSALGLIGAT 261 ++ D GI L+++G+ + F +++ F ++S L + Sbjct: 190 K--KEVRIKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFV 237 Query: 262 LWLLRTKKPVVDLSCLRDRNFALGCVTIATFAAVLYGSAVIVPQLAQQ-HLGYTATLAGL 320 + + P VD ++ F +G + + G +VP + + H TA + + Sbjct: 238 KHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSV 297 Query: 321 VLSPGALLITLEIPLVSRLMPHVQTRYLVGFGFVLL 356 ++ PG + + + + L+ Y++ G L Sbjct: 298 IIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL 333
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 113 bits (285), Expect = 2e-29 Identities = 59/405 (14%), Positives = 126/405 (31%), Gaps = 85/405 (20%) Query: 118 KRPGKKTLIILGAVLIVLLVGGLVW-WLATRNQESTDDA--YTDGNAIAVAPHVSGYVTR 174 + P + ++ ++ LV + L +T + G + + P + V Sbjct: 50 ETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKE 109 Query: 175 LAVDDNTFVRRGDVLVEIDPRDYRAQVDAAQAQLGLAQAQLDAARVQLD---IARVQYPA 231 + V + VR+GDVL+++ A Q+ L QA+L+ R Q+ I + P Sbjct: 110 IIVKEGESVRKGDVLLKLTALGAEADTLKTQSS--LLQARLEQTRYQILSRSIELNKLPE 167 Query: 232 Q---YRQARAQIESAEAAYRQALAAQARQRAVDARATSQQAIDAADAQRATADANVAMAQ 288 + E +L + + + + +D A+R T A + + Sbjct: 168 LKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYE 227 Query: 289 AQA----------------------------RTASLVPQQIRQAETAVEERRQQVLQARA 320 + ++R ++ +E+ ++L A+ Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKE 287 Query: 321 -----------------------------QLETANLNLSYCEMRAPSDGWVTRRNVQ-LG 350 +L +RAP V + V G Sbjct: 288 EYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEG 347 Query: 351 SFLQPGTSIFSIVTP---RVWITANFKESQLERMRIGDRVDVSVDAYPD---LDLHGHVD 404 + ++ IV P + +TA + + + +G + V+A+P L G V Sbjct: 348 GVVTTAETLMVIV-PEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVK 406 Query: 405 SIQLGSGSRFSAFPTENATGNFVKIVQRVPVKIVL--DGPLPTRP 447 +I L + + G ++ + + + +P Sbjct: 407 NINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNIPLSS 444
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.6 bits (193), Expect = 5e-19 Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 2/186 (1%) Query: 2 KTVAITGASAGVGRATAHAFARLGANVALLARDPRALHDTACEVRAYGVQALPIAVDVSD 61 K ITGA+ G+G A A A GA++A + +P L ++A A DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 62 AAALDAAAERIEHELGPLDVWVNNAMVTVFAPFDAISPEDYARVTAVTYLGCVYGTRAAL 121 +AA+D RIE E+GP+D+ VN A V ++S E++ +V G +R+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 122 ARMAPRNRGTIVQVGSALAYRSIPLQAPYCGAKHAIRGFTDALRCELLHAHSHVRVTMVQ 181 M R G+IV VGS A A Y +K A FT L EL A ++R +V Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL--AEYNIRCNIVS 186 Query: 182 LPAIDT 187 + +T Sbjct: 187 PGSTET 192
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 31.3 bits (71), Expect = 0.001 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 9/61 (14%) Query: 77 LARAWRRRHDADAPVATRDDSTRFLARCGM---------LAALGFVIGLVFTGIVTAFVG 127 + W+ R D PV +D++ A + F++G + + + +G Sbjct: 19 WSETWKIRKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMGFLVIAFILSVLG 78 Query: 128 P 128 Sbjct: 79 Q 79
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 30.6 bits (69), Expect = 0.019 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 27 RDDNAAAPGDAA---DAASAAEAPEPASGWRFVRIGASAADAAASMSARVKDDRRLSRDR 83 RDD AAPG A S A + + + A+ A A A + A + + RD Sbjct: 202 RDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADPSLNAIIVRDS 261 Query: 84 DASVA 88 + Sbjct: 262 PERMP 266
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.0 bits (67), Expect = 0.046 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 744 QGAAIGIGRSSAVAARAAAGMATQAAAAASLQRINAARGGSPAGASVAGSGITVHFSPTI 803 GA+ + AAG+A A LQR RG +PAG +V G + P Sbjct: 223 LGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAV-----PGG 277 Query: 804 TVQGGSPDGVKDQVKQG 820 V GG G V G Sbjct: 278 AVPGGFGPGGFGPVLDG 294
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 29.8 bits (66), Expect = 0.015 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%) Query: 67 RMNPEDLGSIDIVLDEHDLEYPIDY-------REDQESAFPLEQAAVQTATEAIQLRREK 119 R++P+DLG + I L D + I R E+A P+ + Q A IQL + Sbjct: 262 RLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALEAALPVLRT--QLAESGIQLGQSN 319 Query: 120 MVADLAQNPNSYAGGNKKQLSATEKFTAAGSDPVGVIED 158 + + S++G + + A +P+ +D Sbjct: 320 ISGE------SFSGQQQAASQQQQSQRTANHEPLAGEDD 352
>PERTACTIN#Pertactin signature. Length = 922 Score = 27.8 bits (61), Expect = 0.005 Identities = 16/63 (25%), Positives = 21/63 (33%) Query: 22 SLPALSACGTPPPAPMVCPRPVLPPELLRRPAPMTPLIPGYARTTSSPTTSTPAAAAATS 81 SL A P PAP P+P P +P R +P PA ++ Sbjct: 561 SLVGAKAPPAPKPAPQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAPAPQPPAGRELSA 620 Query: 82 NRN 84 N Sbjct: 621 AAN 623
>PF07520#Virulence protein SrfB Length = 1041 Score = 26.5 bits (58), Expect = 0.031 Identities = 14/49 (28%), Positives = 20/49 (40%) Query: 9 RLTSWLVAAIILVAAIALFSPQQLPVALYKLSLVSLAAVVAYWLDRGLF 57 +L + V + V A + LSL +L YWLD G+F Sbjct: 991 KLRAERVREVFRVDAAEDAEGTMIKNDDVVLSLHTLGFEDEYWLDTGVF 1039
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 31.0 bits (70), Expect = 0.005 Identities = 18/151 (11%), Positives = 36/151 (23%), Gaps = 25/151 (16%) Query: 63 TEELSHLEVIGSMAAMLNRGAKGELAEAVDEQAELYRKLHGAGND-SHVTQVLYGAGAPL 121 EL + + + ++L+ ++L L G + S ++L G Sbjct: 94 VPELEQKQNVSELLSLLSNSPN-------ISLSQLKAYLEGKSEEPSEQFKMLCGL---R 143 Query: 122 TNSGGVPWSAAYIDTIGEPTADLRSNIAAEARAKIIYERLINVT--------DDPDIRDA 173 G P A + + + +T + Sbjct: 144 DALKGRPELAHLSHLVEQALVSMAEEQGETIVLGA------RITPEAYRESQSGVNPLQP 197 Query: 174 LGFLMTREVSHQMSFEKALYAITANFPPGKL 204 L V + FP G + Sbjct: 198 LRDTYRDAVMGYQGIYAIWSDLQKRFPNGDI 228
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.009 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 20/140 (14%) Query: 460 EGWGRLNLFAAAD---GYANFAGD--VSVTMDASL---GGFNAAD----TWR-NDIGGDG 506 EG G L L D G F GD V T D + G + A+ TW+ ++ D Sbjct: 387 EGSGTLTLNNNIDQGAGGLFFEGDYEVKGTSDNTTWKGAGVSVAEGKTVTWKVHNPQYD- 445 Query: 507 KLTFAGTGALTLTGANTYRGGTEVRGGTL------AAGSPQAFGAGDVYVGGGTVAIKAA 560 +L G G L + G +G +V GT+ AF + + G T+ + Sbjct: 446 RLAKIGKGTLIVEGTGDNKGSLKVGDGTVILKQQTNGSGQHAFASVGIVSGRSTLVLNDD 505 Query: 561 ARANINGRYTQLKGGTLELD 580 + + N Y +GG L+L+ Sbjct: 506 KQVDPNSIYFGFRGGRLDLN 525
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 28.7 bits (64), Expect = 0.035 Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 151 GVGRAA-MNRAMPDLLLRLELRLPRVLIDSLREQWQRLVDIDKQITLIE 198 G G+AA + R + D+ + + ++ ++RE W +++D+ ++ IE Sbjct: 134 GTGQAAKVQRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIE 182
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 29.5 bits (66), Expect = 0.028 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 338 VADGTTPTLHPMRRSLSRLRMLMEGGF-LMEALVLINSILEVSVSAALETAANDCD 392 V GT P ++LR + E GF L + L I+++ ++ A LE + Sbjct: 99 VHLGTRPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAA 154
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 42.7 bits (100), Expect = 2e-07 Identities = 19/77 (24%), Positives = 34/77 (44%) Query: 9 RDGVLEKTLPVFWKYGFAGTSLQQLEQATGVNKSGLYSEFEDKEDLFLHSLLYYYEHRGA 68 R +L+ L +F + G + TSL ++ +A GV + +Y F+DK DLF + G Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 69 QQILTAEPKGYGNIERF 85 ++ + Sbjct: 73 LELEYQAKFPGDPLSVL 89
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 5e-04 Identities = 25/139 (17%), Positives = 62/139 (44%), Gaps = 1/139 (0%) Query: 33 SLDAISRQWGLADSQSVYLVTVFGVTFAFAAPLLQVGFGHLRRRRQVLLGLTMFSAAALL 92 SL I+ + + + ++ T F +TF+ + L +R +L G+ + +++ Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI 95 Query: 93 LAAAPNY-PVLLLSRVLMGLGAGFIGPVLGALGSSLVEPDEQGSAIAVVLLGLSVAGLVG 151 ++ +L+++R + G GA ++ + + + + +G A ++ +++ VG Sbjct: 96 GFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 152 MPLSAWIAHAWGARALFLV 170 + IAH L L+ Sbjct: 156 PAIGGMIAHYIHWSYLLLI 174
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 69.7 bits (170), Expect = 3e-16 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 2/184 (1%) Query: 9 ALITGASSGIGAIYAQRLARRGFDLVLVARNRDRLNDFAKRITDDTQRNVDVIAADLGDP 68 A ITGA+ GIG A+ LA +G + V N ++L + + R+ + AD+ D Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEA-RHAEAFPADVRDS 69 Query: 69 HALAEIEAKL-RTDASITLLVNNAGVGTHKPLLESDVDAMTRMIDLNVTALTRLTYAAVP 127 A+ EI A++ R I +LVN AGV + + +N T + + + Sbjct: 70 AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVSK 129 Query: 128 GFVARGRGAVINISSIVAIGPELLNGVYGGSKAFTLAFTQSLHHELADKGVQVQAVLPGA 187 + R G+++ + S A P Y SKA + FT+ L ELA+ ++ V PG+ Sbjct: 130 YMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPGS 189 Query: 188 TATE 191 T T+ Sbjct: 190 TETD 193
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 67.0 bits (163), Expect = 2e-15 Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 5/190 (2%) Query: 3 LTGNTIFITGGTSGIGRALAENLHRRGNKVIVAGRRKALLDEIARANPGI----DTVELD 58 + G FITG GIG A+A L +G + L+++ + + D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 59 VGDAQQIERVARKLIADYPTLNVVVNNAGIMPFDDAGGALDDAQAVRLVTTNLLGPVRVS 118 V D+ I+ + ++ + ++++VN AG++ +L D + + N G S Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 119 AALVEHLKAQPESYIINNSSVLAFVPLAGTALYSATKAAVHSYTLSQRFALRNTSVRVLE 178 ++ +++ + I+ S A VP A Y+++KAA +T L ++R Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 179 IAPPWVDTDL 188 ++P +TD+ Sbjct: 185 VSPGSTETDM 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.5 bits (79), Expect = 8e-04 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 1/134 (0%) Query: 275 GYTLWAPTMIKSLGVGRDLFIGLIAALPNAVAMIVMITV-GQSADRRRERRVHTAVLFLL 333 G+ P M+K + IG + P +++I+ + G DRR V + L Sbjct: 274 GFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFL 333 Query: 334 AATGLTLALVWHGNLWLTVIALCIANAGLLSVPPVFWGMPTALLGPSNAASGIAWISAIG 393 + + LT + + W I + GL V + ++ L A +G++ ++ Sbjct: 334 SVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTS 393 Query: 394 NIGGFFGPYVVGVL 407 + G +VG L Sbjct: 394 FLSEGTGIAIVGGL 407
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 104 bits (261), Expect = 3e-28 Identities = 30/148 (20%), Positives = 65/148 (43%), Gaps = 4/148 (2%) Query: 14 VYVVDDDDSMRNALGRLFRSVGLGVELFGSAQEFLDFDKRDVPSCLILDVRLKGQSGLAL 73 + V DDD ++R L + G V + +A + ++ DV + ++ L Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 74 QEQIVAGDLQLPIIFITAHGDVAMSVKAMKNGALDFMSKPFRDQDMLDVVQNALLKDEKR 133 +I LP++ ++A ++KA + GA D++ KPF +++ ++ AL E + Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL--AEPK 123 Query: 134 RKSDGRLADVRRRYGTL--TPREREVMK 159 R+ D + + + +E+ + Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 30.1 bits (68), Expect = 0.026 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 18/135 (13%) Query: 378 NTDIEARRQA-EQALERSRAELAHV--TRVTMLGELAASI--AH-------EVTQPLAAI 425 TD+ + ALE+S+ EL + +G A I AH E+ + Sbjct: 34 ITDVSTEIEKLTAALEKSKEELRAIKDQTEASMGADKAEIFAAHLLVLDDPELVDGIKGK 93 Query: 426 VTSGEAGLRWLNHDVPDLDEVRDSIEQMTDD--ARRATDIIRQIRAMAKRNDRDDARVDV 483 + + + + +V D E M ++ RA D IR + + + Sbjct: 94 IENEQMNAEYALKEV--SDMFVSMFESMDNEYMKERAAD-IRDVSKRVLGHLIGVETGSL 150 Query: 484 TSIVEQSIDLMRREL 498 +I E+++ ++ +L Sbjct: 151 ATIAEETV-IIAEDL 164
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.4 bits (188), Expect = 1e-19 Identities = 24/114 (21%), Positives = 46/114 (40%) Query: 4 RGIVSIVDDDRSIRRATRSLVRSLGWDVRVYESGEAFLDADLILDVACIISDVHMKGITG 63 + + DDD +IR + G+DVR+ + D +++DV M Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 64 LEMYETLLERGPAPPVIFITAFPSEATRERAMKLGAICVFSKPVDPARIQERLE 117 ++ + + P PV+ ++A + T +A + GA KP D + + Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.3 bits (221), Expect = 3e-23 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 9/189 (4%) Query: 6 FITAVNSGFGREMSEQLLARGDRVVGT------VRELQSVEDLHERYPESFRRLPLDVTD 59 FIT G G ++ L ++G + + ++ S R+ E+F P DV D Sbjct: 12 FITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF---PADVRD 68 Query: 60 VAAIPKVVQRAFAEYGRVDVVVNNAGYGLFGPAEGLTNEQIRDQIDTNLVGPIHVTRAVL 119 AAI ++ R E G +D++VN AG G L++E+ N G + +R+V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 120 PHLRAQGGGRIVAMSTYGGQAAHPGASLYHASKWGLEGFFESLASEVAFFDIGVTIVEPG 179 ++ + G IV + + + Y +SK F + L E+A ++I IV PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 180 SVRTAFRRT 188 S T + + Sbjct: 189 STETDMQWS 197
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 82.8 bits (204), Expect = 6e-21 Identities = 64/199 (32%), Positives = 87/199 (43%), Gaps = 13/199 (6%) Query: 3 IKDRVFLITGAGSGLGAAVARMVVAQGGKAVLLDVNDEAGTSLANELGAAARF---VKTD 59 I+ ++ ITGA G+G AVAR + +QG +D N E + + L A AR D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 VTSEADGQAAVAAARDAFGRVDVLVNCAGVAPGEKVVGRDGPHSLDRFARAVSINLVGTF 119 V A A G +D+LVN AGV G S + + S+N G F Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR----PGLIHSLSDEEWEATFSVNSTGVF 121 Query: 120 NMIRLAAEAMSKQDADAEGERGVIVNTASVAAFDGQIGQAAYAASKSGVVGMTLPIAREL 179 N R ++ M + G IV S A + AAYA+SK+ V T + EL Sbjct: 122 NASRSVSKYMMDR------RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175 Query: 180 ARFGIRVVTVAPGIFATPM 198 A + IR V+PG T M Sbjct: 176 AEYNIRCNIVSPGSTETDM 194
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 27.6 bits (61), Expect = 0.015 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 6/105 (5%) Query: 31 YPKEWLDVWQN-DLTISPETIEGAIGYVAESGESIIGFW-IRASLNSDRPTPGWLFVHPD 88 + K + +++ D+ +S EG ++ + IG IR++ N + V D Sbjct: 42 FSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWN-GYALIEDIAVAKD 100 Query: 89 HMGQGVARALWESVRTEAAARGIKRFVIEADPNAAP---FYLTLG 130 + +GV AL A ++E FY Sbjct: 101 YRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHH 145
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 63.4 bits (154), Expect = 6e-13 Identities = 65/392 (16%), Positives = 142/392 (36%), Gaps = 44/392 (11%) Query: 39 LDRGTLAVASSAIRGDLGLSLAQMGLLLSAFSWSYALCQFPVGGLVDRIGPRRLLGIGLI 98 L+ L V+ I D A + +AF ++++ G L D++G +RLL G+I Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 99 VWSFAQAAGGIV-STFGWFIVARIVLGIGEAPQFPSAARVVSNWFPLRARGTPTGIFNAA 157 + F G + S F I+AR + G G A VV+ + P RG G+ + Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSI 147 Query: 158 SPLGTALAPLLLSVLVASFDWRWAFIVTGALGLVVAVVWFALYRDPVRAELSVAERGYLD 217 +G + P + ++ W + ++ ++ ++ ++ E+ + +G+ D Sbjct: 148 VAMGEGVGPAIGGMIAHYIHWSYLLLI-----PMITIITVPFLMKLLKKEVRI--KGHFD 200 Query: 218 ADAQSVVAAPKLTFVEWRSLFSHGTTWGMLIGFFGSVYLNWVYLTWL------PGYLTME 271 +++ + F+ LF+ + LI S + ++ + PG Sbjct: 201 IKGIILMSVGIVFFM----LFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNI 256 Query: 272 RHMSLVRTGFAAS---------VPFLCGFVGSL--------------VAGWLSDFVTRRS 308 M V G VP++ V L ++ + ++ Sbjct: 257 PFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGIL 316 Query: 309 RSPVASRRNAVVAAMLGMVAFTIPAALVQSNTV--ALACISVVIFLANAASACSWALATA 366 + V+F + L+++ + + + V+ L+ + S ++++ Sbjct: 317 VDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSS 376 Query: 367 AAPPSRIASLGAIQNFGGFIGGALAPILTGII 398 A + + NF F+ + G + Sbjct: 377 LKQQEAGAGMSLL-NFTSFLSEGTGIAIVGGL 407
>PF03627#PapG Length = 336 Score = 32.2 bits (73), Expect = 0.002 Identities = 10/23 (43%), Positives = 11/23 (47%) Query: 133 RLLARLPSDLPLGLYECPAPYRR 155 LP+DLPLG Y PY Sbjct: 155 IFKVALPADLPLGDYSVTIPYTS 177
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.4 bits (105), Expect = 3e-07 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 13/160 (8%) Query: 12 TILLVGASGLLGRAVAASLSREP----SLTLLATIRNPQGAGAKRLALPPDN--IAELDV 65 L+ GA+G +G V+ L + L + A+ L ++D+ Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDL 61 Query: 66 LDSPSLERLFEIHKPAAVILCAAER--RPDVCERDPAAARAINVTAPARIGALAARYGAW 123 D + LF V + R + +P A N+T I Sbjct: 62 ADREGMTDLFASGHFERVFISPHRLAVRYSL--ENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 124 TLGI-STDYVF-DGKAAPYSE-DATPNPLNIYGRTKLEGE 160 L S+ V+ + P+S D+ +P+++Y TK E Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANE 159
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 36.7 bits (85), Expect = 1e-04 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Query: 289 MLMIAAPVVGHLSDRFGRIRVMLIALILVGVTTWPLFVLLNRYPTVETLLAVQALVGLLI 348 M APV+G LSDRFGR V+L++L V + ++ P + L + + G+ Sbjct: 55 MQFACAPVLGALSDRFGRRPVLLVSLAGAAVD----YAIMATAPFLWVLYIGRIVAGITG 110 Query: 349 AVSLAPLPALLADIFPTSTR 368 A A +ADI R Sbjct: 111 ATGAVAG-AYIADITDGDER 129 Score = 33.3 bits (76), Expect = 0.002 Identities = 62/356 (17%), Positives = 121/356 (33%), Gaps = 32/356 (8%) Query: 47 FFPTHDAATSLLLSVGTFGISFVTRPLGSIVLGSYADRAGRKASLTISIGLMMLGTAMIA 106 ++D + + + + + VLG+ +DR GR+ L +S+ + A++A Sbjct: 35 LVHSNDVTAHYGILLALYALMQF---ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA 91 Query: 107 FAPTYAQIGIASPLLIIVARMLQGFSTGGEFGAATAFMVEQADARRRGFFASWQMSTQGL 166 AP ++ + R++ G TG A A++ + D R + + G Sbjct: 92 TAPFLW--------VLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGF 142 Query: 167 ATVLAAGVSALLSLLLTADQLHAWGWRVAFAVGLLIGPVGLYIRRNIDEPADFRRLGEAG 226 V + L+ + A A+ L G ++ E R Sbjct: 143 GMVAGPVLGGLM-----GGFSPHAPFFAAAALNGLNFLTGCFLLP---ESHKGERRPLRR 194 Query: 227 RAKSPLRDVFVRDRANMLLGAGVVA-TATAFNYVHKLYMPTYAVKQLHIPATSSYLGAVV 285 A +PL ++ V V + + H AT+ + Sbjct: 195 EALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAA 254 Query: 286 TGAMLMIA-APVVGHLSDRFGRIRVMLIALILVGVTTWPLFVLLNRYPTVETLLAVQALV 344 G + +A A + G ++ R G R +++ +I T + L R ++ + A Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLGMIA-DGTGYILLAFATRGWMAFPIMVLLASG 313 Query: 345 GLLIAVSLAPLPALLADIFP-TSTRGTGLALSYNFSVTLFGGFA-PLIVTWLIDAT 398 G+ +PAL A + G ++T PL+ T + A+ Sbjct: 314 GIG-------MPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 9e-07 Identities = 60/306 (19%), Positives = 111/306 (36%), Gaps = 11/306 (3%) Query: 81 VFGALSDRYGRVRVLTWTILLFAIFTGLCAFARGFEDLLVYRTIAGIGLGGEFGIGMALA 140 V GALSDR+GR VL ++ A+ + A A L + R +AGI G + A Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYI 120 Query: 141 AEAWPAAKRARVSCYVALGWQAGVLLAALLTPFLLLHIGWRGMFVVGVLPALLAWVMRN- 199 A+ +RAR +++ + G++ +L + F L ++ Sbjct: 121 ADITDGDERARHFGFMSACFGFGMVAGPVLGGL-MGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 200 KLHEPEAFVQR-ATQPTSNAFRMLVADGRTARTSLGIVILCSVQNFGYYGIMIWLPTFLS 258 L E +R + N + + + +Q G +W+ F Sbjct: 180 LLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWV-IFGE 238 Query: 259 KQMGFSLTKSGL-WTAATVVGMMIGVWVFGQLADRIGRKPTFLLYQLGSVVTVIAYARLS 317 + + T G+ A ++ + + G +A R+G + + LG + Y L+ Sbjct: 239 DRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM---LGMIADGTGYILLA 295 Query: 318 HPTTMLWAGALMGMFVNGMVG--GYGTLMSEGYPTAARATAQNVLWNIGRAVGGFGPVAV 375 T A +M + +G +G ++S + Q L + GP+ Sbjct: 296 FATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLF 355 Query: 376 GALAAH 381 A+ A Sbjct: 356 TAIYAA 361 Score = 32.1 bits (73), Expect = 0.004 Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 8/148 (5%) Query: 269 GLWTAATVVGMMIGVWVFGQLADRIGRKPTFLLYQLGSVVTVIAYARLSHPTTMLWAGAL 328 G+ A + V G L+DR GR+P L+ G+ V A + +L+ G + Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMA-TAPFLWVLYIGRI 104 Query: 329 MGMFVNGMVGGYGTLMSEGYPTAARATAQNVLWNIGRAVGGFGPVA---VGALAAHYGFQ 385 + G +++ RA + A GFG VA +G L + Sbjct: 105 VAGITGATGAVAGAYIADITDGDERARHFGFM----SACFGFGMVAGPVLGGLMGGFSPH 160 Query: 386 TAIALLAGLYVLDMIATLFLIPELKGVE 413 A L L+ + FL+PE E Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGE 188
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 71.0 bits (174), Expect = 8e-16 Identities = 65/368 (17%), Positives = 115/368 (31%), Gaps = 68/368 (18%) Query: 17 LVSLAHAQSSSVTMWGQVDSGVTYISNKRGGASWGTASGIGAP-----TRWGLRGNEALG 71 L +L A + VT++G + +GV + + + G ++ G +G E LG Sbjct: 10 LAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLG 69 Query: 72 GGYRAVFALESGFNVNTGMLIKSNTLFDRQAYVGLDGPFGTITFGRQADLMDDVAIRYSN 131 G +A++ +E ++ + +RQ+++GL G FG + GR ++ D Sbjct: 70 NGLKAIWQVEQKASIAGT----DSGWGNRQSFIGLKGGFGKLRVGRLNSVLKDT---GDI 122 Query: 132 AFWNRSLYAFHAGNLDSLTNGYQIENAVKYRSPEWYGIRVGALYGF---TGSDATGHSAG 188 W+ + +V+Y SPE+ G+ Y G S Sbjct: 123 NPWDSKSDYLGVNKIAEPEARLI---SVRYDSPEFAGLSGSVQYALNDNAGRH-NSESYH 178 Query: 189 AYATYDRGPLSVGVTYMTTQRRVLDLYNYFGWTRFLDQTLSAQKTFQSNEVNNLGIGLTY 248 A Y G V + Q E N+ + Sbjct: 179 AGFNYKNGGFFVQYGGAYKRHH------------------------QVQENVNIEKYQIH 214 Query: 249 RITEPWHVNVLY------TRTDIKGARTATHMQNIDVGTLYQFTAAEAV-TLDYTYSR-- 299 R+ + + LY + +H +V + + Y + Sbjct: 215 RLVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKG 274 Query: 300 -LDGM----HWNTLEAGNLYALSKRTQLQATLTWQLASGNGATAATYPNGPSSGRSQLLA 354 D ++ + G Y SKRT + W L G G + Sbjct: 275 SFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGW-LQEGKGESKFV----------STAG 323 Query: 355 HVGMTHSF 362 VG+ H F Sbjct: 324 GVGLRHKF 331
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.0 bits (83), Expect = 3e-04 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 7/143 (4%) Query: 32 MLFLVFVGTVVNYVDRANLSVAAPLLKHEFGLDPVAIG--VLFSAYSWTYVLANLPGGWV 89 + V G ++ +S+ ++K L IG ++F + + ++ GG + Sbjct: 258 FMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG-TMSVIIFGYIGGIL 316 Query: 90 VDRFGSRVMYAVALLTWSSFTLLQGFAGRFA---TLFGLRLGVGIAEAPTFPINNRVVSI 146 VDR G + + + S L F + +G I+ +VS Sbjct: 317 VDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST-IVSS 375 Query: 147 WFAQRERGIATSVYLVGQYVGMA 169 Q+E G S+ ++ Sbjct: 376 SLKQQEAGAGMSLLNFTSFLSEG 398
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 32.6 bits (74), Expect = 0.001 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 215 GKALWLCQEDGRTLASLAIDGDPATGVAHLRWFIVNDALRGSGVGRQLMTLAMRFVDEHR 274 GKA +L + + + I + G A + V R GVG L+ A+ + E+ Sbjct: 64 GKAAFLYYLENNCIGRIKIRSN-WNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENH 122 Query: 275 FRETYLWTFKGLDAARHLYESFGFAL 300 F L T +A H Y F + Sbjct: 123 FCGLMLETQDINISACHFYAKHHFII 148
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.6 bits (56), Expect = 0.038 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 15/60 (25%) Query: 4 YKELKAQMDALAEKAEA-------------ARVAEFQAIVDDIRTKVAEYGITEKDIFGT 50 + L + L A A+F+ VD + K G++ DI T Sbjct: 691 HDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVD--QEKAQALGVSLSDINQT 748
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.6 bits (69), Expect = 0.008 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%) Query: 182 GDAPSVSMALQDARRPFVTANHAMWQIFEPDLRRRLDALSAEAGIVERVRAALLELIPGG 241 + P + AR ++ + A+ + DAL + LI Sbjct: 385 SEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAA 444 Query: 242 LATTDGV----ARTLAISKRTLQRRL 263 L T G A L +++ TL++++ Sbjct: 445 LTATRGNQIKAADLLGLNRNTLRKKI 470
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 53.2 bits (128), Expect = 4e-10 Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 30/179 (16%) Query: 9 VMVTGATGYVAGWLVQRLLEAGLTVHAAVRDPDSPD-KLEHLQRIAAGKPGTIRYFRADL 67 +VTGA G++ + +RLLEAG V D D L+ + +PG ++ + DL Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPG-FQFHKIDL 61 Query: 68 LEPGSYADAMAGC------GTVFHTASPFTV--TVTDPQKELVDPALLGTRNVLETANRT 119 + + M VF + V ++ +P D L G N+LE R Sbjct: 62 AD----REGMTDLFASGHFERVFISPHRLAVRYSLENPHA-YADSNLTGFLNILEGC-RH 115 Query: 120 PSVRRVVLTSSCAAIYGDNADLAATPGGVFTEAIWNTSSSLTH--QPYSYSKTVAEREA 176 ++ ++ SS +++YG N + F+ S+ H Y+ +K E A Sbjct: 116 NKIQHLLYASS-SSVYGLNRKMP------FST-----DDSVDHPVSLYAATKKANELMA 162
>PERTACTIN#Pertactin signature. Length = 922 Score = 32.8 bits (74), Expect = 0.007 Identities = 44/183 (24%), Positives = 65/183 (35%), Gaps = 12/183 (6%) Query: 42 GDASTGGGAASTAPPATSVFQVGTTTVD-PNLPPEPALPADTQVCSTLEAANTLVSRPD- 99 GD S AS AP A VF TVD ++ A + + + R D Sbjct: 204 GDTSVTAVPASGAPAAVFVFGANELTVDGGHITGGRAAGVAAMDGAIVHLQRATIRRGDA 263 Query: 100 ---GSLPPEADPSTAGVGKAVSTATANPDQARIQAALDACGAAVDAE-VGATIAA-ADAA 154 G++P A P A G + +D + V+A +GA I A A Sbjct: 264 PAGGAVPGGAVPGGAVPGGFGPLLDGWYGVDVSDSTVDLAQSIVEAPQLGAAIRAGRGAR 323 Query: 155 ATAAQKTAAAPNANL--AGASGEELAKPKYRASKFAVRLVVNRAGPGNGFISGPLTLPSG 212 T + + +AP+ N+ G P AS ++ L G + L P Sbjct: 324 VTVSGGSLSAPHGNVIETGGGARRFPPP---ASPLSITLQAGARAQGRALLYRVLPEPVK 380 Query: 213 VTL 215 +TL Sbjct: 381 LTL 383
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 28.4 bits (63), Expect = 0.016 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 255 IAATVIGGTLLTGGVGYVIGSVFGVGILGTIQVLITFDGTLSS-WWTRI--VIGALLCVF 311 +A ++G +L G G +G+ FG G T+ F + S + TR+ ++ L + Sbjct: 12 VAIGLVGLIMLQQGKGADMGASFGAGASATL-----FGSSGSGNFMTRMTALLATLFFII 66 Query: 312 CVLQRVIERHATRRRTGGTGLGAQRPTRDTAPARPAPPEEDI 353 ++ I + T + + L A T T PA PA P DI Sbjct: 67 SLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDI 108
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.3 bits (219), Expect = 6e-22 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 19 GAHILIVDDRPNDLRLLTEILRAAQCRISVAFDGLQAYHRAQAIAPDLILMDVRMPRMDG 78 GA IL+ DD +L + L A + + + + A DL++ DV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 79 FAASRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGALDYIVKPFEPAEVIARIRNHLK 138 F + +PV++++A I E GA DY+ KPF+ E+I I L Sbjct: 63 FDLLPRIKKA--RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 139 RGRRSQ 144 +R Sbjct: 121 EPKRRP 126
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 57.6 bits (138), Expect = 2e-10 Identities = 95/377 (25%), Positives = 160/377 (42%), Gaps = 30/377 (7%) Query: 1138 VAIGQAASSAQADAIALGSGATATGAQSVAQGANAVAVSVGSVALGS-----------GA 1186 +AIG A +A+ A+A+G+G+ ATG SVA G + A+ +V G+ GA Sbjct: 73 IAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGA 132 Query: 1187 RSTATD-ALALGAGASATFANSVALGAGSLTTVGALTNYVAYGLSSPQSSAGEVNVG--- 1242 R++ +D +A+G + A NSVA+G S + +A G S V++G Sbjct: 133 RASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYS-IAIGDRSKTDRENSVSIGHES 191 Query: 1243 -NRQITGLAAGKNGTDAVNVSQLDSIANQLTTLIDQRTTNLGGQYTTNPNGANVPPGSTG 1301 NRQ+T LAAG TDAVNV+QL + ++R+ L + + Sbjct: 192 LNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIA 251 Query: 1302 ANSSAGGSGAVASGSNSTAVGNSSLA---------SGNGSTAIGVGSTASGNNSTALGTG 1352 N + S + A S S +T A+ T L T Sbjct: 252 NNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTLETA 311 Query: 1353 SNDGGRSNVVAVGSADSARQVVNVAAGTQGTDAVNVNQLNAVSNQFTQSLNTVNNQLTQM 1412 + + A+ SA+ + +V N+ +S +++ Q+ Sbjct: 312 EEHANKKSAEALASANVYADSKSSHTLKTANSYTDVTVSNSTKKAIRESNQYTDHKFRQL 371 Query: 1413 QQQIQQTDSMAREGIAATAAMASI--PHMDRDSNFAMGVGTATFQGQKAMAVGVQARVTE 1470 ++ + D+ +G+A++AA+ S+ P+ NF GVG ++ +A+A+G RV E Sbjct: 372 DNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVG--GYRSSQALAIGSGYRVNE 429 Query: 1471 NLKATLNGGFAGSQRVV 1487 N+ +AGS V+ Sbjct: 430 NVALKAGVAYAGSSDVM 446 Score = 44.9 bits (105), Expect = 2e-06 Identities = 80/353 (22%), Positives = 144/353 (40%), Gaps = 34/353 (9%) Query: 369 TSIGINSVAAADWTVAIGASNSVAAGAGAGSIAGGNNSKVLGGTG------AVALGQGQT 422 T++ I+ A + V G + A G +S +G T AVA+G G Sbjct: 35 TAVQISPNADPALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSI 94 Query: 423 VSGDGAVAIGDPSSAIGTGAVTMGSNNTANGNGAVAIGNTNNAQGTGSLALGNTSTAAAA 482 +G +VAIG S A+G AVT G+ +TA +G VAIG + TG +A+G S A A Sbjct: 95 ATGVNSVAIGPLSKALGDSAVTYGAASTAQKDG-VAIGARASTSDTG-VAVGFNSKADAK 152 Query: 483 GAIAFGASA--VANNANDVALGSGSVTDVPHPTATGTLGGVTYNYNGTNPTSVVSVGAAG 540 ++A G S+ AN+ +A+G S TD + VS+G Sbjct: 153 NSVAIGHSSHVAANHGYSIAIGDRSKTDRENS---------------------VSIGHES 191 Query: 541 TERQITNVAAGRVNSASTDAINGSQLAATNTALDSLSTSTASSITSLSTGVSSLSTGLSS 600 RQ+T++AAG + TDA+N +QL + ++ + + + + + Sbjct: 192 LNRQLTHLAAG---TKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVL 248 Query: 601 TNSAVTSLSTSTSTGISSLSTGLSSTNSAVTSLSTSTSTGISSLSTGLSSTDSTVTSLST 660 + + S S T ++ + + + +++ + ++V + Sbjct: 249 GIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVARTTL 308 Query: 661 STSTGLSSANSSITSLSTSTSTGINSLSTGLSSTDSTVTSLSTSTSTGLSSAN 713 T+ ++ S+ S + S T ++ T ++S ST + +N Sbjct: 309 ETAEEHANKKSAEALASANVYADSKSSHTLKTANSYTDVTVSNSTKKAIRESN 361 Score = 40.7 bits (94), Expect = 5e-05 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 5/157 (3%) Query: 207 ALGLGASAAGAQSVALGYATHATDTGTVAIGNQATSTGSAGVAVGSGALATGNSGVAMGV 266 ALGL A G A ++AIG A + A VAVG+G++ATG + VA+G Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP 105 Query: 267 NSGAKGTSSIAIGWGGTA---GVPGSGTQSLGTSSIAMGSNTTAGADNALAFGLNAN--A 321 S A G S++ G TA GV S + +A+G N+ A A N++A G +++ A Sbjct: 106 LSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAA 165 Query: 322 SGVSSIAMGVQSTATALFGVALGNLALATGTSATALG 358 + SIA+G +S V++G+ +L + A G Sbjct: 166 NHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202 Score = 40.3 bits (93), Expect = 6e-05 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 105 VNSTAFGNLSTAAGTSATALGPGAHAMGDGSTAVGINAQATGVDSASLGVQAIGSGAYS- 163 +N++A G S A G +A A A A+G GS A G+N+ A G S +LG A+ GA S Sbjct: 63 LNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAST 122 Query: 164 -----VAIGNLSSATQSG-AVAMGSGAAATGVAAIGLGNNAFASGQYAAALGLGASAAGA 217 VAIG +S + +G AV S A A AIG ++ A+ Y+ A+G + Sbjct: 123 AQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRE 182 Query: 218 QSVALGYATHATDTGTVAIGNQAT 241 SV++G+ + +A G + T Sbjct: 183 NSVSIGHESLNRQLTHLAAGTKDT 206 Score = 39.5 bits (91), Expect = 1e-04 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 8/133 (6%) Query: 316 GLNANASGVSSIAMGVQSTATALFGVALGNLALATGTSATALGPGATASAVGATSIGINS 375 GLNA+A G+ SIA+G + A VA+G ++ATG ++ A+GP + A A + G S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 376 VAAADWTVAIGASNSVAAGAGAGSIAGGNNSKVLGGTGAVALGQGQTVSGDG--AVAIGD 433 A D VAIGA A +A G NSK +VA+G V+ + ++AIGD Sbjct: 122 TAQKD-GVAIGAR----ASTSDTGVAVGFNSKA-DAKNSVAIGHSSHVAANHGYSIAIGD 175 Query: 434 PSSAIGTGAVTMG 446 S +V++G Sbjct: 176 RSKTDRENSVSIG 188 Score = 38.3 bits (88), Expect = 2e-04 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 14/115 (12%) Query: 81 SAGGGSATGGASSISVGNGSVATQVNSTAFGNLSTAAGTSATALGPGAHAMGDG------ 134 + G + ++++VG GS+AT VNS A G LS A G SA G + A DG Sbjct: 74 AIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGAR 133 Query: 135 ------STAVGINAQATGVDSASLG--VQAIGSGAYSVAIGNLSSATQSGAVAMG 181 AVG N++A +S ++G + YS+AIG+ S + +V++G Sbjct: 134 ASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIG 188 Score = 37.2 bits (85), Expect = 5e-04 Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 6/118 (5%) Query: 295 GTSSIAMGSNTTAGADNALAFGLNANASGVSSIAMGVQSTATALFGVALGNLALATGTSA 354 G ++ A G ++ A A A A A G SIA GV S A ALG+ A+ G ++ Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 355 TALGPGATASAVGATS-----IGINSVAAADWTVAIGASNSVAAGAGAGSIAGGNNSK 407 TA G A +TS +G NS A A +VAIG S+ VAA G SIA G+ SK Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGY-SIAIGDRSK 178 Score = 35.6 bits (81), Expect = 0.001 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 18/143 (12%) Query: 139 GINAQATGVDSASLGVQAIGSGAYSVAIGNLSSATQSGAVAMGSGAAATGVAAIGLGNNA 198 G+NA A G+ +S+AIG + A + AVA+G+G+ ATGV ++ +G + Sbjct: 62 GLNASAKGI--------------HSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLS 107 Query: 199 FASGQYAAALGLGASAAGAQSVALGYATHATDTGTVAIGNQATSTGSAGVAVGSGALATG 258 A G A G AS A VA+G +DTG VA+G + + VA+G + Sbjct: 108 KALGDSAVTYG-AASTAQKDGVAIGARASTSDTG-VAVGFNSKADAKNSVAIGHSSHVAA 165 Query: 259 NSG--VAMGVNSGAKGTSSIAIG 279 N G +A+G S +S++IG Sbjct: 166 NHGYSIAIGDRSKTDRENSVSIG 188 Score = 34.9 bits (79), Expect = 0.003 Identities = 36/142 (25%), Positives = 65/142 (45%) Query: 111 GNLSTAAGTSATALGPGAHAMGDGSTAVGINAQATGVDSASLGVQAIGSGAYSVAIGNLS 170 G ++A G + A+G A A + AVG + ATGV+S ++G + G +V G S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 171 SATQSGAVAMGSGAAATGVAAIGLGNNAFASGQYAAALGLGASAAGAQSVALGYATHATD 230 +A + G + + A+G + A A A +A S+A+G + Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 231 TGTVAIGNQATSTGSAGVAVGS 252 +V+IG+++ + +A G+ Sbjct: 182 ENSVSIGHESLNRQLTHLAAGT 203 Score = 34.5 bits (78), Expect = 0.003 Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 2/185 (1%) Query: 115 TAAGTSATALGPGAHAMGDGSTAVGINAQATGVDSASLGVQAIGSGAYSVAIGNLSSATQ 174 +AA SA P A A Q + +LG++ A G +SA Sbjct: 10 SAALISALFSSPYAFADDYDGIPNLTAVQISPNADPALGLEYPVRPPVPGAGGLNASAKG 69 Query: 175 SGAVAMGSGAAATGVAAIGLGNNAFASGQYAAALGLGASAAGAQSVALGYATHATDTGTV 234 ++A+G+ A A AA+ +G + A+G + A+G + A G +V G A+ A G V Sbjct: 70 IHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDG-V 128 Query: 235 AIGNQATSTGSAGVAVGSGALATGNSGVAMGVNSGAKGTSSIAIGWGGTAGVPGSGTQSL 294 AIG +A ST GVAVG + A + VA+G +S +I G + + S+ Sbjct: 129 AIGARA-STSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSI 187 Query: 295 GTSSI 299 G S+ Sbjct: 188 GHESL 192 Score = 33.7 bits (76), Expect = 0.007 Identities = 27/80 (33%), Positives = 42/80 (52%) Query: 1305 SAGGSGAVASGSNSTAVGNSSLASGNGSTAIGVGSTASGNNSTALGTGSNDGGRSNVVAV 1364 AGG A A G +S A+G ++ A+ + A+G GS A+G NS A+G S G S V Sbjct: 59 GAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG 118 Query: 1365 GSADSARQVVNVAAGTQGTD 1384 ++ + + V + A +D Sbjct: 119 AASTAQKDGVAIGARASTSD 138
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 113 bits (285), Expect = 3e-32 Identities = 57/149 (38%), Positives = 75/149 (50%), Gaps = 14/149 (9%) Query: 85 IVFQCGAAPAPAAAAVAPAPAPV---EKVSLTGDAYFATDSAVLTPAATATLDKLLNQ-- 139 + ++ G A A APAPAP + +L D F + A L P A LD+L +Q Sbjct: 187 VSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLS 246 Query: 140 QGDRHFARVEVDGYTDATGSDAHNQALSKRRADAVAGYLREHGLKADSFAANGHGEANPA 199 D V V GYTD GSDA+NQ LS+RRA +V YL G+ AD +A G GE+NP Sbjct: 247 NLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPV 306 Query: 200 ASNDTVEGRAR---------NRRVEISLQ 219 N + R +RRVEI ++ Sbjct: 307 TGNTCDNVKQRAALIDCLAPDRRVEIEVK 335
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.7 bits (59), Expect = 0.032 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 15/89 (16%) Query: 43 FELDRNQVARIRGLGQSVGRIRCTCERGGRELQFYLHGKQVSQGVWVG-----VASADPD 97 E+D+ + LG S+ I T + L G V+ + G AD Sbjct: 728 LEVDQEKAQA---LGVSLSDINQT-------ISTALGGTYVNDFIDRGRVKKLYVQADAK 777 Query: 98 YLPTAATIATWEVPNRDDVFAFPGARADL 126 + + V + + A Sbjct: 778 FRMLPEDVDKLYVRSANGEMVPFSAFTTS 806
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.1 bits (65), Expect = 0.005 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 75 LLDHLYIVPAHQGKGIGAAVLREILAEADEHRMPVHVGALRGSDSN----RFYERHGF 128 L++ + + ++ KG+G A+L E + + L D N FY +H F Sbjct: 91 LIEDIAVAKDYRKKGVGTALL-HKAIEWAKENHFCGL-MLETQDINISACHFYAKHHF 146
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 111 bits (278), Expect = 1e-28 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 10 PSILLVDDEPNVLSALRRVFRPTGYDIATADSGEAALEILASTDIDLIVSDMRMPHMSGA 69 +IL+ DD+ + + L + GYD+ + +A+ D DL+V+D+ MP + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 70 EFLARARALYPDTMRILLTGYAEIASVVQAVNEGGVYRYLNKPWDDHDLLLTIEQALEQR 129 + L R + PD ++++ + ++A +E G Y YL KP+D +L+ I +AL + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKA-SEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 130 RLRREAARLAA 140 + R + Sbjct: 123 KRRPSKLEDDS 133
>PF06580#Sensor histidine kinase Length = 349 Score = 42.2 bits (99), Expect = 4e-06 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 45/194 (23%) Query: 397 IATLIDESIDGALRVRRIVQDLRDFSR-----------PASDEWSVVDLHAGLESTLNVV 445 I LI ++ + R ++ L + R +DE +VVD + L S Sbjct: 182 IRALI---LEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQ--F 236 Query: 446 HNELKYKADIVRDYGDVPHVECLPSQLNQVFM-NLLVNAAQAIPERGVITIRTSSDGEQV 504 + L+++ I DV +P L Q + N + + +P+ G I ++ + D V Sbjct: 237 EDRLQFENQINPAIMDVQ----VPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTV 292 Query: 505 SIAISDTGAGMTPDVVRRIFDPFFTTKPVGQGTGLGLSVSHGIVER------HRGAIDVT 558 ++ + +TG+ K + TG GL + ER I ++ Sbjct: 293 TLEVENTGSLA--------------LKNTKESTGTGL---QNVRERLQMLYGTEAQIKLS 335 Query: 559 SEPGRGTTFRIRLP 572 + G + +P Sbjct: 336 EKQG-KVNAMVLIP 348
>PF06580#Sensor histidine kinase Length = 349 Score = 29.1 bits (65), Expect = 0.032 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 30/191 (15%) Query: 188 EAAARLIRSG-GRMQGLLDDLCDFNRTQLGLG-INVVPRNIDLAHVLVNVVDELRAGHPD 245 LI + + +L L + R L V +L V + + D Sbjct: 180 NNIRALILEDPTKAREMLTSLSELMRYSLRYSNARQVSLADELTVVD-SYLQLASIQFED 238 Query: 246 REITVDMRGDLRGEWDEQRMQQL-LSNLVGNAIKYGARDTP----VRVVATTTGDEVFVE 300 R + + + + ++ + + LV N IK+G P + + T V +E Sbjct: 239 R-LQFEN--QINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLE 295 Query: 301 VGNSGPAIDPRMLDRIFDPLERGEERQGRTGDDAGLGLGLFIAR-EIAKAHRGRIDARSD 359 V N+G T + G GL R ++ +I Sbjct: 296 VENTGSLA------------------LKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEK 337 Query: 360 QTETVFAVRLP 370 Q + V +P Sbjct: 338 QGKVNAMVLIP 348
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.010 Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 34 VFLGPSGCGKSTLLRMIAGLEDVTEGELRIG 64 V G G GKSTL+ + GL+ ++ IG Sbjct: 600 VLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 45.1 bits (106), Expect = 3e-07 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 35/269 (13%) Query: 9 LLALTTAAACAAGMADAGTLKVNVAARGNQRATWQAVFDQFHKANPDVDLKISYVGEEAY 68 L ALTT A+ +A K+ + G++ + + + K D +K++ + Sbjct: 12 LSALTTMMFSASALAKIEEGKLVIWINGDK--GYNGLAEVGKKFEKDTGIKVTVEHPDKL 69 Query: 69 KVQMSGWLAT-DPPDVLSWNNGERLAYFAKRGLIEDLGAD--WQKNGWNDTYASVKQSST 125 + + AT D PD++ W + +R +A+ GL+ ++ D +Q + T+ +V+ Sbjct: 70 EEKFPQVAATGDGPDIIFWAH-DRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVR---- 124 Query: 126 YGGKVYSLPLGYDAYGLFYRKDLFEKAGIHGEPADWPQFLDACRKLKAAGIAPIAVAARD 185 Y GK+ + P+ +A L Y KDL + P W + ++LKA G + + ++ Sbjct: 125 YNGKLIAYPIAVEALSLIYNKDL-----LPNPPKTWEEIPALDKELKAKGKSALMFNLQE 179 Query: 186 ---AWTLAAWFDYLDLRINGYAF---HQKLMAGDVAYTDPRVRAVYAAWKKLIDDKYFID 239 W L A GYAF + K DV + +A LI +K+ Sbjct: 180 PYFTWPLIA-------ADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH--- 229 Query: 240 NALSYDVD-SLSPLIVN-GQAAMTLMGTW 266 ++ D D S++ N G+ AMT+ G W Sbjct: 230 --MNADTDYSIAEAAFNKGETAMTINGPW 256
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 41.7 bits (98), Expect = 3e-06 Identities = 65/318 (20%), Positives = 112/318 (35%), Gaps = 29/318 (9%) Query: 26 AALMLGVAMSFTAPYLSLFGVEAAGMSPFLAGIFMTSIAASGVVASTWAGRWSDRRERHR 85 A+ +G+ M L + + GI + A + G SDR R R Sbjct: 17 DAVGIGLIMPVLPGLLRDLVHSNDVTAHY--GILLALYALMQFACAPVLGALSDRFGR-R 73 Query: 86 PLLVVSLGAAALGFALLCVLRAH-----GPVIAAGTILLGAGAVSLSQIFSFARAVLPVA 140 P+L+VSL AA+ +A++ G ++A T GA A + + + Sbjct: 74 PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAY---------IADIT 124 Query: 141 DDAQRELASAALRTMLSIAWVFGPALGALILAQTGFTGLFLAAAAGFVACAAIVA--RIP 198 D +R + V GP LG L + F AAAA + +P Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGL-MGGFSPHAPFFAAAA-LNGLNFLTGCFLLP 182 Query: 199 EPARRPVAAHVQAPDRVAPPPDAARVAVVVVATRASVLRTLFALTLIGLAANATMIVLPL 258 E + + R A P A+ + A+++ F + L+G A + + Sbjct: 183 ESHKG----ERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAA---LWVI 235 Query: 259 YIVHALGGTPANVSAAL-GLAALLEIPMMLWLGIRSTRLDKARWLTACALVHAAYFVGLA 317 + + +L L + + G + RL + R L + ++ LA Sbjct: 236 FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA 295 Query: 318 TVTRVNLILPLQLLSACV 335 TR + P+ +L A Sbjct: 296 FATRGWMAFPIMVLLASG 313
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 25.4 bits (55), Expect = 0.027 Identities = 8/25 (32%), Positives = 15/25 (60%) Query: 32 FSFNEATGRYEIYPATRSLASLKGI 56 F+ N+ G Y +P + +++L GI Sbjct: 113 FNVNDVLGVYSPHPYEQEVSALGGI 137
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 630 bits (1626), Expect = 0.0 Identities = 241/1070 (22%), Positives = 423/1070 (39%), Gaps = 59/1070 (5%) Query: 3 IVRLALRRPYTFVVLALLIFIAGPLALLRTPTDIFPNIDIPVVSIVWSYNGFSAEDMAKR 62 + +RRP VLA+++ +AG LA+L+ P +P I P VS+ +Y G A+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITSNYERALTSDVDDIEHIESQSLN-GVSVVKVFFHPGADINRAIAQAASNAASILRILP 121 +T E+ + +D++ ++ S S + G + + F G D + A Q + +LP Sbjct: 61 VTQVIEQNMNG-IDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLP 119 Query: 122 PGTLPPNIITYNASTVPILQLGLSSDTLAEQQ--LYDLGNSFIRTQLATVQGAAVPLPFG 179 I +S+ ++ G SD Q + D S ++ L+ + G FG Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 GKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGT------AKIGTHEYNVQMNG 233 + + + LD L L P+DV+N + QN + G ++ Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 STQTVAALNDLPVKTIG-GNVVYVRDVAHVRDGYAPQTNIVRVDGKRAALLTVEKTGSAS 292 + + ++ G+VV ++DVA V G I R++GK AA L ++ A+ Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 TLTIIDQVKAMLPKIAAGLPNTLRIAPLDDQSVFVKAAVQGVVREALIAACLTALMILLF 352 L +KA L ++ P +++ D + FV+ ++ VV+ A L L++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LGSWRATLIIAITIPLAVLTSLLALSVLGQTINIMTLGGLALAVGILVDDATVAIENITH 412 L + RATLI I +P+ +L + L+ G +IN +T+ G+ LA+G+LVDDA V +EN+ Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HL-ELGAPLEEAILTGAGEIAVPTFVSTLSICIVFVPMFLLTGVARYLFVPLAEAVIFAM 471 + E P +EA +I + + VF+PM G ++ + ++ AM Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 IASYFFSRTLVPTLAMALMRAKGSGRPPRGAFARIARFQAAFEHRFEAVRLRYRALLSAA 531 S + L P L L++ F F F+ Y + Sbjct: 479 ALSVLVALILTPALCATLLKPV-----SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 532 IARRRRFAAAFLLACVASTGLYAFAGQDFFPSVDTGEIRLHLRAPTGTRIEETARLTDEV 591 + R+ + L L+ F P D G ++ P G E T + V Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK----V 589 Query: 592 EAKIRSVIPANQLAGVLDNIGVPVSGINLTYDSSDPIGTEDADVLVTLKPDHASTAA--Y 649 ++ N+ A V V + V+LKP Sbjct: 590 LDQVTDYYLKNEKANVESVFTVNGFSFS-------GQAQNAGMAFVSLKPWEERNGDENS 642 Query: 650 VAKLRNVLAQAFPGVTFAFLPADIVSQILNFGLPAPIDIQIV---GNKLDQNRAVANALL 706 + + + F+ + I+ G D +++ G D N LL Sbjct: 643 AEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLL 702 Query: 707 AKLRGVRG-LVDARIQQPGDEPAINVNVDRTKAIQAGLDQRDVAQNLLIALSGSSQTTPN 765 LV R D + VD+ KA G+ D+ Q + AL G+ N Sbjct: 703 GMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGT---YVN 759 Query: 766 FWLDPRNGVSYPVLVQTPQYTVNSLQSLANVPLPAGTARSPQTPAGGPAAGAPAQNLLGA 825 ++D G + VQ + + + + + A Sbjct: 760 DFIDR--GRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVP---------------FSA 802 Query: 826 LGTFSRATQQAVVSHYNVQPVLDIFASVQGRDLGGVTADVTQLVDAARAQLPPGASIVLR 885 T + YN P ++I G + D L++ ++LP G Sbjct: 803 FTTSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWT 859 Query: 886 GQVQAMHESFAGLLGGLALAISLVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTR 945 G S +A++ +V+L + ++SW P+ ++ +P + G+ + Sbjct: 860 GMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFN 919 Query: 946 TTLSVPALTGTILCIGIATANSILVVNAARELLAA-GAPPWQAALDAGFNRFRPVVMTAL 1004 V + G + IG++ N+IL+V A++L+ G +A L A R RP++MT+L Sbjct: 920 QKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSL 979 Query: 1005 AMLIGMLPMALGLGDGGEQNAPLGRAVIGGLAFGTVSTLLFVPVLFGFVH 1054 A ++G+LP+A+ G G +G V+GG+ T+ + FVPV F + Sbjct: 980 AFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.9 bits (101), Expect = 2e-06 Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 12/159 (7%) Query: 58 ALGIVPRIDARAAQRAQVAAQQALPVSVVVPGAAPADQTLTLPGSVMPYADA-SIYARTS 116 L ++ +R + L ++ ++ + T G + + I + Sbjct: 45 HLELIETPVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIEN 104 Query: 117 GYIAHWSADLGARVKAGQTLAQISAPDLDAQLRQARADEASAQANYDYAKSTAQRWQDML 176 + G V+ G L +++A A AD Q++ A+ R+Q + Sbjct: 105 SIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 177 KTQSVSQQDTDTKVADMNAKRAMLASAQANVAHLAELVS 215 ++ +++ + + ++ V L L+ Sbjct: 158 RSIELNKLP----ELKLPDEPYFQNVSEEEVLRLTSLIK 192
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.4 bits (79), Expect = 0.001 Identities = 26/199 (13%), Positives = 57/199 (28%), Gaps = 16/199 (8%) Query: 237 QAETQLESTRTQ--DTDIDASRAQLQHAIATLVGESASTFALPP---HVQPFHVPAIPAG 291 AE T++ ++ +R Q+ L P +V V + + Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 292 VPSQLLERRPDIAAAERRVAAANAQIGEARAAFFPDLVLSASAGLESSFFAPW------- 344 + Q + E + A+ A LS F+ Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIA 250 Query: 345 ----LAAPSLFWSLGPQLAGTLFDGGRRSASLRGAHAQYDGAVADYRQTVLVAFQQVEDQ 400 L + + +L + + + A +Y ++ +L +Q D Sbjct: 251 KHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDN 310 Query: 401 LSALDALASEAGSQQRATD 419 + L ++ +Q+A+ Sbjct: 311 IGLLTLELAKNEERQQASV 329
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 80.3 bits (198), Expect = 1e-19 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%) Query: 2 RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGWG 61 IL+ +D+ L + L +G+ V + + D++V DV++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTL--ARRG 118 +L R++ PVL ++A++ + E GA DYL KPF EL+ I + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 119 PPRETEHLAVGDLDI-------DVVRRRVKRGA 144 P + E + + + + R + R Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLM 157
>PF06580#Sensor histidine kinase Length = 349 Score = 34.8 bits (80), Expect = 5e-04 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 26/103 (25%) Query: 321 TLSNLVENALTYGEPP------VEITTRAHGEHYELVVRDHGPGVSEPDLDRVLRPFVRL 374 + LVEN + +G + + L V + G Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLA--------------- 303 Query: 375 DPARGGTSHSGLGLAIVH-RLVRHHGG--TLQIANAADGGLVI 414 + +G GL V RL +G ++++ + Sbjct: 304 --LKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.5 bits (222), Expect = 1e-22 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 9 SAPQVLLVDDDAELRDLLRRFFQQRGIEFSVLHDATNLARRLERERPAIIVLDLMMPGVD 68 + +L+ DDDA +R +L + + G + + +A L R + ++V D++MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 69 GLTALKQLRASGDTIPVIMLTARAEGIDRVLGLELGADDYLGKPFMPQELLARIQAVL-- 126 L +++ + +PV++++A+ + + E GA DYL KPF EL+ I L Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 127 -RRQGPPRTTAVQE 139 +R+ Q+ Sbjct: 122 PKRRPSKLEDDSQD 135
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 3e-06 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 3/106 (2%) Query: 65 KVSDVRPQVSGIILKRLFV-EGSDVKAGQVLYQIDPATYQAAYDQARGTLENARATLASA 123 + +++P + I+ K + V EG V+ G VL ++ +A + + +L AR Sbjct: 95 RSKEIKPIENSIV-KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRY 153 Query: 124 KTKADRFTELVKINAVSKQDYDDAVAAVRADAASVTADEAALESAR 169 + + EL K+ + D + +T+ S Sbjct: 154 QILSRSI-ELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTW 198 Score = 40.2 bits (94), Expect = 1e-05 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 19/154 (12%) Query: 49 QRIVETTELSGRLSAQKVSDVRPQVSGIILKRLFVEGSDVKAGQVLYQIDPATYQAAYDQ 108 + E R+ ++ D L + + K + + Sbjct: 220 LARINRYENLSRVEKSRLDDFSS---------LLHKQAIAKHAVLEQENKYVEAVNELRV 270 Query: 109 ARGTLENARATLASAKTKADRFTELVKINAVSKQDYDDAVAAVRADAASVTADEAALESA 168 + LE + + SAK + T+L K + D + + + L Sbjct: 271 YKSQLEQIESEILSAKEEYQLVTQLFK------NEILDKLRQTTDNIGLL---TLELAKN 321 Query: 169 RVNLEYTHVRAPISGRI-GASTVTEGALVTSNQT 201 + + +RAP+S ++ TEG +VT+ +T Sbjct: 322 EERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1174 bits (3038), Expect = 0.0 Identities = 614/1053 (58%), Positives = 774/1053 (73%), Gaps = 26/1053 (2%) Query: 1 MAEFFIKRPILAWVMAIVIMLVGAAAVTSLPVAQYPTIAPPSVQVTATYPGASADTVAAT 60 MA FFI+RPI AWV+AI++M+ GA A+ LPVAQYPTIAPP+V V+A YPGA A TV T Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTQVIEQKLSGIDNVLYMSSTSSSAGQATITLTFNPGTNPDIAQVQVQNKVTQATPTLPQ 120 VTQVIEQ ++GIDN++YMSSTS SAG TITLTF GT+PDIAQVQVQNK+ ATP LPQ Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 TVQEQGVQVAKASTSFLMIVALSSPGGTWNSVDLGNIIATRIEDPLAQLNGVGDVTLFGA 180 VQ+QG+ V K+S+S+LM+ S D+ + +A+ ++D L++LNGVGDV LFGA Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 QHAMRIWLNPVKLRSFGLAPSDVTTAITNQNVELSTGQVGGSPATDSQAINATIRSSSLL 240 Q+AMRIWL+ L + L P DV + QN +++ GQ+GG+PA Q +NA+I + + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 TSADQFADILLRVNSDGSRVLLKDVARVEVGGDSYDTASRLNGKPASALAIKLATGANAL 300 + ++F + LRVNSDGS V LKDVARVE+GG++Y+ +R+NGKPA+ L IKLATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 DAANAVRAKLAEIQLQLPKDVAISYPYDTTPFVRISIEEVVKTLFEAVVLVFLVMYLFLQ 360 D A A++AKLAE+Q P+ + + YPYDTTPFV++SI EVVKTLFEA++LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NVRATLIPTLVVPVALLGTFGVMSMIGFSINVLSMFAMVLAIGLLVDDAIVVVENVERIM 420 N+RATLIPT+ VPV LLGTF +++ G+SIN L+MF MVLAIGLLVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEKLGPKEATHKAMGQITGALVGVTTVLTAVFIPMAFFGGSTGAIYRQFSITIVSAMLL 480 E+KL PKEAT K+M QI GALVG+ VL+AVFIPMAFFGGSTGAIYRQFSITIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SVMLALTLTPALCATLLKRADVEHH-AKRGFFGWFNRWFAKRNAGYSSSLARVVARPARY 539 SV++AL LTPALCATLLK EHH K GFFGWFN F Y++S+ +++ RY Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 MLLYGAIAGVVALLYVTLPSSFLPDEDQGYFIVSISAPAGTPASRTLKTVEAVEQYVLKD 599 +L+Y I + +L++ LPSSFLP+EDQG F+ I PAG RT K ++ V Y LK+ Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 600 E-PGVKQVIAINGFSFNGQGQNNAIAFVTLKDWSLR-GSRDSVSAIIARANQHFAGNRDA 657 E V+ V +NGFSF+GQ QN +AFV+LK W R G +S A+I RA RD Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 658 RIFVLNPPAIQELGTQSGLDFEIEDRGGAGHDKLLAVRNQFLGMASKEP-TLAMVRPAGL 716 + N PAI ELGT +G DFE+ D+ G GHD L RNQ LGMA++ P +L VRP GL Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 717 EDTPQLQVDIDREKANALGLSISDVNATLQTAFGSSYVNNYIDTGRVQKVYVQSDAPYRM 776 EDT Q ++++D+EKA ALG+S+SD+N T+ TA G +YVN++ID GRV+K+YVQ+DA +RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 777 MPADLGDWYVKASSSASSSSSSSSSSTTTSTTGYDSTMVPFSSFAKSHWTFGPPQIERYN 836 +P D+ YV+++ + MVPFS+F SHW +G P++ERYN Sbjct: 781 LPEDVDKLYVRSA---------------------NGEMVPFSAFTTSHWVYGSPRLERYN 819 Query: 837 RQLATGISAATRPGVSTGEAMTAVEQLARKLPPGFAVEWTGQSYQEKQAGSQATVLYAIS 896 + I PG S+G+AM +E LA KLP G +WTG SYQE+ +G+QA L AIS Sbjct: 820 GLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAIS 879 Query: 897 LVVVFLCLAGLYESWSIPLAVLLVVPLGVLGALLAAHGRGLSNDIYFKVGLLATIGLSTK 956 VVVFLCLA LYESWSIP++V+LVVPLG++G LLAA ND+YF VGLL TIGLS K Sbjct: 880 FVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAK 939 Query: 957 NAILIVEFAKDLQ-AQGRSLVDAVLEAAHMRLRPILMTSLAFVFGVLPLVISTGAGAGAR 1015 NAILIVEFAKDL +G+ +V+A L A MRLRPILMTSLAF+ GVLPL IS GAG+GA+ Sbjct: 940 NAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQ 999 Query: 1016 HAIGTGVTGGMIAATVLAIFFVPVFFVVVRRLF 1048 +A+G GV GGM++AT+LAIFFVPVFFVV+RR F Sbjct: 1000 NAVGIGVMGGMVSATLLAIFFVPVFFVVIRRCF 1032 Score = 69.9 bits (171), Expect = 4e-14 Identities = 49/346 (14%), Positives = 112/346 (32%), Gaps = 34/346 (9%) Query: 721 QLQVDIDREKANALGLSISDV-----NATLQTAFGSSYVNNYIDTGRVQKVYVQSDAPYR 775 +++ +D + N L+ DV Q A G + ++ + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 776 MMPADLGDWYVKASSSASSSSSSSSSSTTTSTTGYDSTMVPFSSFAKSHWTFGPPQI-ER 834 P + G ++ +S S V A+ + R Sbjct: 243 --PEEFGKVTLRVNSDGSV--------------------VRLKDVARVELGGENYNVIAR 280 Query: 835 YNRQLATGISAATRPGVSTGEAMTAV----EQLARKLPPGFAVEWT-GQSYQEKQAGSQA 889 N + A G+ G + + A+ +L P G V + + + + + Sbjct: 281 INGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEV 340 Query: 890 TVLYAISLVVVFLCLAGLYESWSIPLAVLLVVPLGVLGALLAAHGRGLSNDIYFKVGLLA 949 ++++VFL + ++ L + VP+ +LG G S + G++ Sbjct: 341 VKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVL 400 Query: 950 TIGLSTKNAILIVE-FAKDLQAQGRSLVDAVLEAAHMRLRPILMTSLAFVFGVLPLVIST 1008 IGL +AI++VE + + +A ++ ++ ++ +P+ Sbjct: 401 AIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFG 460 Query: 1009 GAGAGARHAIGTGVTGGMIAATVLAIFFVPVFFVVVRRLFNEHGHT 1054 G+ + M + ++A+ P + + + H Sbjct: 461 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHE 506
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 29.0 bits (65), Expect = 0.046 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 67 LGYFFLAIPAATVVKKFSYKTTILVGLLLYTTGCLLFFPAASMAKYGMFLVALFVIAAG 125 L A+ V + + +++G++ TG +L A + M + ++A+G Sbjct: 258 LHSLAQAMITGPVAARLGERRALMLGMIADGTGYILL---AFATRGWMAFPIMVLLASG 313
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.6 bits (144), Expect = 3e-13 Identities = 33/195 (16%), Positives = 58/195 (29%), Gaps = 16/195 (8%) Query: 2 RANKRQLVVDKATELFSRHGFHPVGVDWIIDDSGVARMTLYRHFASKDELIREVLVQRYD 61 RQ ++D A LFS+ G + I +GV R +Y HF K +L E+ Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 62 LIVGSIDAQLQHVVD-----PVERVKTVFDWYEAWFRTPEFAGCLFERALAEFGTAYAPI 116 I E + V + R +F + A + Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV--GEMAVV 126 Query: 117 SDVAIRYRRKMVEWMAELIEAVV------PAETANRLATVFMMLLDGATVEARAFNDSA- 169 + + + + ++ + R A + + G +E F + Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISG-LMENWLFAPQSF 185 Query: 170 -AAQRAWQAAHALLE 183 + A LLE Sbjct: 186 DLKKEARDYVAILLE 200
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.9 bits (64), Expect = 0.033 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 255 AFSALSLDDAE--AQKAEDAIWGAIR-AVHERMIFARERQEWARRTGNAEDVAIEQARID 311 L L AE A+K +A A + A R RE+ E R+ AE A + Sbjct: 126 EDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALS 185 Query: 312 ENQRLADVLRRAVGAALS 329 E + ++ ++ + AA S Sbjct: 186 EEAKAVEIAQKKLSAAQS 203
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.7 bits (181), Expect = 2e-15 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 1264 RVLLVEDDQETALSLTALLELAGATVTAAKSGAEALERLPETPVDAIVSDIGLPDMDGYE 1323 +L+ +DD L L AG V + A + D +V+D+ +PD + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 1324 LIRHIKADPRWATLRTVALTGRNRQDDVRAAAEAGFDTHLSKPLD 1368 L+ IK L + ++ +N A+E G +L KP D Sbjct: 65 LLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD 107
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 30.5 bits (69), Expect = 0.019 Identities = 10/17 (58%), Positives = 15/17 (88%) Query: 387 GAVQVGADADLVVWDPA 403 G+++VG ADLV+W+PA Sbjct: 424 GSLEVGKRADLVLWNPA 440
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.009 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 17/95 (17%) Query: 254 MNAVDFIAQVRQADALANVPVGRRVVVIGGGNTAIDAAVQSRKLGA----------ERVT 303 NA D + ++++A V++ A+++ + GA + Sbjct: 60 ENAFDLLPRIKKARP-------DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI 112 Query: 304 MVYRRGVDAMSATWAEREFAQKSGVTLVTHAKPVR 338 + R + ++ E + G+ LV + ++ Sbjct: 113 GIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQ 147
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.6 bits (144), Expect = 4e-13 Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 17/170 (10%) Query: 21 RRRKAHIRESNEAHLLACAEAVFAERGLAGASTAMIAERAGLPKANVHYYFPTKLALYRR 80 R+ K +E+ + +L A +F+++G++ S IA+ AG+ + ++++F K L+ Sbjct: 3 RKTKQEAQETRQH-ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 81 VLDDLFEDWHRAAGSFEA--GDDPVEAIGSYVRAKMALSQRRPLGSKVWANEIIHGAEH- 137 + + + ++A DP+ + + + + ++ I H E Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEE-RRRLLMEIIFHKCEFV 120 Query: 138 --------MQDILSQRVKPWFDARINVIDGWIARG-LLAPIDPHALMYLI 178 Q L + + I L A + ++ Sbjct: 121 GEMAVVQQAQRNLCLESYDRIEQTLKHC---IEAKMLPADLMTRRAAIIM 167