>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 97.3 bits (242), Expect = 3e-25 Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 39/279 (13%) Query: 84 QQPQRVVVLDSGEIDQVLSLGVTPVGIASPKDAS---SQPAYLENQLADVQTVGTTSELN 140 P R+V L+ ++ +L+LG+ P G+A + S+P + V VG +E N Sbjct: 33 IDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPD----SVIDVGLRTEPN 88 Query: 141 FEAIAALKPDLILGSKLRVDESYDQLSQIAPTVL-----SIRPGFPWKENFLLTADALGL 195 E + +KP ++ S S + L++IAP +P +++ AD L L Sbjct: 89 LELLTEMKPSFMVWS-AGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNL 147 Query: 196 EGKAVEVLNEYQTHVDAVRETI--DGSPEISLVRFM-PGRTRLYGNLSFIGAILKDLGLS 252 + A L +Y+ + +++ G+ + L + P ++G S IL + G+ Sbjct: 148 QSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIP 207 Query: 253 RP----------EIQNIDDLAVEISPENITDANGDWIFYSTYGKPEATEQDNILSNELWH 302 +ID LA D + + + + D +++ LW Sbjct: 208 NAWQGETNFWGSTAVSIDRLAA------YKDVD-----VLCFDHDNSKDMDALMATPLWQ 256 Query: 303 NLPAVQEGHALEVNDESWFMGLGPLGANEVLDDIENILG 341 +P V+ G V WF G L A + ++N +G Sbjct: 257 AMPFVRAGRFQRVPA-VWFYG-ATLSAMHFVRVLDNAIG 293
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.6 bits (121), Expect = 6e-09 Identities = 83/376 (22%), Positives = 132/376 (35%), Gaps = 43/376 (11%) Query: 39 ALDAMDVGLISFVMAALATHWGLSPTETSLLG---SIGFVGMAIGASLGGLLADKLGRRQ 95 ALDA+ +GLI V+ L S T+ G ++ + A + G L+D+ GRR Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRP 74 Query: 96 VFALSLLVYGVATGASALSVSLAMLMALRFVVGLGLGAELPVASTLISEFSPRKVRGRMV 155 V +SL V A + L +L R V G+ GA VA I++ + R R Sbjct: 75 VLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHF 133 Query: 156 VILEAFWALGWIMAAIVGTFVVAGSDNGWRWALALGCVPAIYAVYVRLGLPESVRFLEKK 215 + A + G + ++G + S + +A A + + + LPES + E++ Sbjct: 134 GFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAA--LNGLNFLTGCFLLPESHK-GERR 190 Query: 216 GRHDEAEAIVVSFEEAAAAEGKAADATTAVVHDNAAEGSVSIWSAALRKRTVALWIVWFC 275 EA + SF A A AL V+F Sbjct: 191 PLRREALNPLASFRWARGMTVVA-----------------------------ALMAVFFI 221 Query: 276 INL-SYYGAFIWIPSLLVADGF---TLVKSFQFTLIITLAQLPGYAVAAWLIEKWGRRST 331 + L A +W + D F L L + + + G R Sbjct: 222 MQLVGQVPAALW--VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRA 279 Query: 332 LATFLVGSAISAALYGLANVEWQILVAGCLLSFFNLGAWGALYAIGPELYPTNVRGTGTG 391 L ++ L A W LL+ +G AL A+ +G G Sbjct: 280 LMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGM-PALQAMLSRQVDEERQGQLQG 338 Query: 392 AAAGFGRIASIIAPLI 407 + A + SI+ PL+ Sbjct: 339 SLAALTSLTSIVGPLL 354
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 25.2 bits (55), Expect = 0.033 Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 5/48 (10%) Query: 26 IENKLNGLDGVENAEVKFSSGRILITHDPQK-----VSVRDLVTAVAE 68 +++ L+ L+GV + ++ + + I D ++ D++ + Sbjct: 162 VKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKV 209
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 4e-21 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%) Query: 13 GRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGL 72 +LV DD+ + ++ L RAG+D R D+VV D+ +P+ + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 73 EVCRRIRT-FSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPR 131 ++ RI+ D +L+++A+ + I GA DY+ KPF + EL+ + L P+ Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 132 TSTTPPQV 139 + + Sbjct: 124 RRPSKLED 131
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 31.1 bits (70), Expect = 0.008 Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 15/77 (19%) Query: 66 LITLAVALPTALISALLASLWLSRRLRTPL------QDLTRAATSLTAGN--YR------ 111 I L VA A+ + LW L QD LT N YR Sbjct: 24 RIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSG 83 Query: 112 -IRVPAGEAGPEVTTLA 127 I VPA + LA Sbjct: 84 AIEVPADKVHELRLRLA 100
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 28.4 bits (63), Expect = 0.029 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%) Query: 1 MKRTITIAALALTSTLVLSAC-ADNTEGENTDTTTIATTSAPDTTETTGATTDPE 54 +R + + AL S ++ A D TT TT+A + G + Sbjct: 3 SQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAGSAADQGVPASGQ 57
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.5 bits (79), Expect = 8e-04 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 19/154 (12%) Query: 28 VIEWFDFLVY-GTVAALVFNKMYFPSGNEF----LSTILAYASFSLTFFFRPIGGVIFAH 82 ++ W L + + +V N N+F ST +F LTF IG ++ Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTF---SIGTAVYGK 71 Query: 83 IGDRIGRKKTLFITLMLMGGGTVAIGLLPDYNAIGIWAPILLMFLRILQGIGIGGEWGGA 142 + D++G K+ L +++ G+V +G LL+ R +QG G Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVI-------GFVGHSFFSLLIMARFIQGAGAAAFPALV 124 Query: 143 LLLAYEYAPKKQR----GLYGAVPQMGISLGMLL 172 +++ Y PK+ R GL G++ MG +G + Sbjct: 125 MVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.9 bits (179), Expect = 2e-17 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 2/115 (1%) Query: 7 VLIVDDEPFFINALETYFSTNENINVVATAENGVQALDILSKTIVDVVLCDVRMPLLSGV 66 +L+ DD+ L + +V N ++ D+V+ DV MP + Sbjct: 6 ILVADDDAAIRTVLNQAL-SRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 67 ELMKILAEKKLTCRVLALTSFLDDYAMLSMLQFGAFGFLLKSADRDEIIEAVQSA 121 +L+ + + + VL +++ + + GA+ +L K D E+I + A Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRA 118
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 3e-06 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 9/157 (5%) Query: 83 RSRKQVEAAAREKETLEYAHQSELNRLEAELVQ-EKMEISESRRARDQETLEEIKLQLEE 141 + E + +E +T+E Q E E + ++S + +T E + E Sbjct: 1036 TTETVAENSKQESKTVEKNEQDAT---ETTAQNREVAKEAKSNVKANTQTNEVAQSGSET 1092 Query: 142 MRTQLSELSGREWGYEPTMLRAEARRILELESQQLSQQFQAPQPEVPEPVAVPEPMPEPA 201 TQ +E + + E + E+ + Q E +P A P +P Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 202 PVPEPVPEPEPVEVAVEAEEEPAPGRRRRRHAAPEET 238 + EP+ E+PA + + T Sbjct: 1153 ---VNIKEPQSQTNTTADTEQPA--KETSSNVEQPVT 1184
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 128 bits (324), Expect = 1e-34 Identities = 97/413 (23%), Positives = 183/413 (44%), Gaps = 18/413 (4%) Query: 23 VLSILVVSAMIMILNETILSVALPSIMEDFSVPETTAQWLTTGFMLTMAVVIPTTGYLLD 82 +L L + + +LNE +L+V+LP I DF+ P + W+ T FMLT ++ G L D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 83 RFSTKTIFVTALLFFTVGTLTAALAPTFA-VLLGARIVQAVGTALVMPLLMTVTLTVVPA 141 + K + + ++ G++ + +F +L+ AR +Q G A L+M V +P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 142 ERRGSMMGIISIVISVAPALGPTLSGVILNSLTWHWLFWMMLPIVVIALVIGFFLIKNIG 201 E RG G+I ++++ +GP + G+I + + W +L + +I ++ FL+K + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIP----MITIITVPFLMKLLK 190 Query: 202 ETKITPLDVLSVILSVFAFGGLVYGFSSFGAILEGEGTVGIFAIVVGAIALLIFALRQHQ 261 + I F G++ + + I ++V ++ LIF Sbjct: 191 KEV--------RIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSFLIFVKHIR- 241 Query: 262 LGKQDKALMDLRAFKVRNFSFSLTTILLAFGAMLGTVMVLPIYLQTSLGVTALVTGLVVM 321 K +D K F + + FG + G V ++P ++ ++ G V++ Sbjct: 242 --KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVII 299 Query: 322 -PGGLLQGLISPFIGRFYDKVGPRPLLIPGAIALAIAASSMTFLNENSPVWMVVVMHVVF 380 PG + + G D+ GP +L G L+++ + +FL E + +M +++ V Sbjct: 300 FPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVL 359 Query: 381 SIGMCLMMTPLMTTALGALPKHLYGHGSAILNTFQQLAGAAGTAIMIAALSFG 433 G+ T + T +L + G G ++LN L+ G AI+ LS Sbjct: 360 G-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIP 411
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 31.3 bits (71), Expect = 0.017 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%) Query: 537 IIGQDEAVKAVSRAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAGFLFGDDDSL 596 ++G+ A++ + R + R + + + G SG GK +++AL + + Sbjct: 139 LVGRSAAMQEIYRVLARL-------MQTDLTLMITGESGTGKELVARALHDYGKRRNGPF 191 Query: 597 IQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKP--FS-----VVLFDEIEKA 649 + I+M S LFG E G T R F + DEI Sbjct: 192 VAINMAAIPRDLIESELFGH--------EKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 650 HKEIYNTLLQVLEDGRLT 667 + LL+VL+ G T Sbjct: 244 PMDAQTRLLRVLQQGEYT 261
>PF05272#Virulence-associated E family protein Length = 892 Score = 38.9 bits (90), Expect = 3e-05 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 12/85 (14%) Query: 34 LVLVGPSGCGKSTTLRMLAGLENVTDGAIFIGDKDVTHVAPRDRDIAMVFQNYALYPHMT 93 +VL G G GKST + L GL+ +D IG +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT---------GKDSYEQIAGIVAY---E 646 Query: 94 VGENMGFALKIAGKSQDEINKRVDE 118 + E F A + + R D Sbjct: 647 LSEMTAFRRADAEAVKAFFSSRKDR 671
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 42.8 bits (100), Expect = 2e-06 Identities = 78/346 (22%), Positives = 135/346 (39%), Gaps = 51/346 (14%) Query: 49 EIAKAYTEETGVKVKVVTAASGSYEQTLKAEIGKDEAP-TLFQVNGPAGFITWQDYMADM 107 E+ K + ++TG+KV V E+ + P +F + G +A++ Sbjct: 48 EVGKKFEKDTGIKVTV--EHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEI 105 Query: 108 SDTEVAKQLTDDIPPLTTE----DGEVRGVPFAVEGFGIIYNDEIFDKYIATSGAKIKST 163 + K D + P T + +G++ P AVE +IYN ++ K+ Sbjct: 106 TPD---KAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPN-------PPKTW 155 Query: 164 DEITSYQKLKEVAEDMQAKKDELGIEGAFASTSLTSGEDWRWQTHLANAPIWQEYQDKGV 223 +EI + K EL +G A + W A+ +Y++ G Sbjct: 156 EEIPALDK-------------ELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYEN-GK 201 Query: 224 EDTNEIEFSYNKEYKNLFDLYLENSTVEKSLAPSKTVSDSMAEFAQGKAAMVQNGNWAWS 283 D ++ L +L + K + S + A F +G+ AM NG WAWS Sbjct: 202 YDIKDVGVDNAGAKAGL--TFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWS 259 Query: 284 QISETSGNVVKEDKIKFLPMYMGLPDEEKHGINVGTENYLGVNSEASEVDQQATKDFVDW 343 I + N + LP + G P + G+ L A+ +++ K+F++ Sbjct: 260 NIDTSKVNY----GVTVLPTFKGQPSKPFVGV-------LSAGINAASPNKELAKEFLEN 308 Query: 344 LFTSEAGKEHVVKD--LGFIAPFESYTAENTPNDPLSEQVAEAIAN 387 ++ G E V KD LG +A +SY E DP ++A + N Sbjct: 309 YLLTDEGLEAVNKDKPLGAVA-LKSYE-EELAKDP---RIAATMEN 349
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.019 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 6 YTMKNVRK--AIGDKVILDNVYMSFYPGAKIGVV----GPNGAGKSSILKIMAGLD 55 Y + +R +G +++ +V PG K G G GKS+++ + GLD Sbjct: 565 YKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLD 620
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.033 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 9/128 (7%) Query: 64 QYFSWIGGMLTGDFGTSLSSGQDLSPIIFDRLQVSLILVGCSIVLSLLIAIPLGVLSARR 123 Q W LTG SL L +IF+ ++ L++ R+ Sbjct: 16 QGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAIS---------LMGLVLTHAYRSFIKRQ 66 Query: 124 GGVIISGISQIGIAIPSFLAGILLVAVFAVGLGWLPANGWIPPSENFGGFLARLILPVLA 183 G + ++ I +P+ + ++ V + L A P +I V+ Sbjct: 67 GWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVV 126 Query: 184 LTAVQAAI 191 +T + + + Sbjct: 127 VTFMWSLL 134
>PF01540#Adhesin lipoprotein Length = 475 Score = 27.4 bits (60), Expect = 0.020 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 12/79 (15%) Query: 55 AAKKAGNIYKETLRTMRASTKTPDQDPLKETLRSFIASINQLAAKKNFIDAGVREDIVVA 114 AA K N E L+ K PD + ETL IA A K+F +AG D Sbjct: 43 AALKQANALAEELK------KNPDYSKILETLNKEIAE-----ATKSFKEAGSYGDYPAI 91 Query: 115 LEKLCEAAEASPEEIQQAI 133 + KL A E + E QQ + Sbjct: 92 ISKLSAAVENAKSE-QQKV 109
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 119 bits (300), Expect = 2e-34 Identities = 81/258 (31%), Positives = 127/258 (49%), Gaps = 19/258 (7%) Query: 48 LKGRKALITGGDSGIGAAVAIAYAREGADV-AIAYLPEEQADADRVLQAIEETGQKAFSF 106 ++G+ A ITG GIG AVA A +GA + A+ Y PE+ ++V+ +++ + A +F Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKL---EKVVSSLKAEARHAEAF 62 Query: 107 PGDLRDPEYCRSLVQETVNALGGLDILVNNASRQVWAPGLT-EITDENFDQTLQVNLYGS 165 P D+RD + +G +DILVN A V PGL ++DE ++ T VN G Sbjct: 63 PADVRDSAAIDEITARIEREMGPIDILVNVAG--VLRPGLIHSLSDEEWEATFSVNSTGV 120 Query: 166 FRVTKAAIPHLKP--GSSIIFTSSIQAYQPSETLLDYAMTKAALNNLSKGLASSLIGDGI 223 F +++ ++ SI+ S A P ++ YA +KAA +K L L I Sbjct: 121 FNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNI 180 Query: 224 RVNSVAPGPFWTPLQPS-----HGQPQEKIEGFGQH----APIGRAGHPVELAGAYVFLA 274 R N V+PG T +Q S +G Q I+G + P+ + P ++A A +FL Sbjct: 181 RCNIVSPGSTETDMQWSLWADENGAEQ-VIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 275 SDEASYVVGETLGVTGGT 292 S +A ++ L V GG Sbjct: 240 SGQAGHITMHNLCVDGGA 257
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.009 Identities = 36/247 (14%), Positives = 87/247 (35%), Gaps = 24/247 (9%) Query: 23 NADPKVQIQQAIEDAQRQHQEL---SQQAAAVIGNQRQ------LEMQLNRRLAEIEKLQ 73 A P + E+++++ + + Q A R+ ++ N + E+ + Sbjct: 1030 PATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSG 1089 Query: 74 GNTRQAIQLADKARADGDVKKATEYENAAEAFAAQL---VTAEQSVEDTKQLHDQALQQA 130 T++ K A + ++ + E ++ V+ +Q +T Q + ++ Sbjct: 1090 SETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN 1149 Query: 131 DQA----KKAVERNSMALQQKVAERTK-----LLSQLEQAKMQEKVSESLKSMDSLTSGS 181 D + + N+ A ++ A+ T +++ V E+ ++ T+ Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Query: 182 TPNLD---QVREKIERRYANALGQAELASNSVEGRMAEVEQAGVQMAGHSRLEQIRAEMA 238 T N + + + + R + E A+ S R ++ L RA+ Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQ 1269 Query: 239 GGSLTAG 245 +L G Sbjct: 1270 FVALNVG 1276
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 47.7 bits (113), Expect = 2e-08 Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 43/241 (17%) Query: 38 STDSVANAVAKIG----PGALNCSGVMISPSWALTARHCVDDINILGDIDTITPITPGIH 93 +T+ V I G SGV++ LT +H VD + GD + I+ Sbjct: 82 TTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATH--GDPHALKAFPSAIN 139 Query: 94 RNEGNY----MGEVYRAPS-GDLALININGVHKGTIAQLPTQEYPLGTAAQS-------- 140 ++ ++ + GDLA++ + + + + A++ Sbjct: 140 QDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITV 199 Query: 141 VGFGGGGVNIRTAESVNMILTDIYSVRSGKFHHGVGRSHYLLFDYDSAETGRIHKGDSGG 200 G+ G ES I YD + TG G+SG Sbjct: 200 TGYPGDKPVATMWESKGKIT----------------YLKGEAMQYDLSTTG----GNSGS 239 Query: 201 PIFIGD-EVVGIMSHGTINKNDGSFDDESGADVFASLEWILDTTGITVTDTAEDNNDNSD 259 P+F EV+GI G N+ + +V L+ ++ D +N DN D Sbjct: 240 PVFNEKNEVIGIHWGG--VPNEFNGAVFINENVRNFLKQNIEDIHFAN-DDQPNNPDNPD 296 Query: 260 N 260 N Sbjct: 297 N 297
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 28.3 bits (63), Expect = 0.010 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 12/94 (12%) Query: 42 RPEFKLGVTVNDKSKDEEGVPRIIEVSLRVSIEVPDGKITVEPEAIYL--IPENKVYLT- 98 P+ ++ K ++ + EV L +S+E + + ++ + + V+ Sbjct: 46 EPKLSFDLSTEAKQVGDD----LYEVCLNISVET---TMESSGDVAFICEVKQAGVFTIS 98 Query: 99 --ESDAMVDYFNNHAIFTLVPYARQAVSDLGQRA 130 E M + L PYAR+ VS L R Sbjct: 99 GLEEMQMAHCLTSQCPNMLFPYARELVSSLVNRG 132
>adhesinb#Adhesin B signature. Length = 310 Score = 29.0 bits (65), Expect = 0.012 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 1 MLKNKTLALLAVSTLMFGLSACSSDADGPDSSGASSSSTGSSSASADTTDSAAVDK 56 M K + L LL ++ GL+ACSS ++ + + ++S AD T + A DK Sbjct: 1 MKKCRFLVLLLLAF--VGLAACSSQKSSTETGSSKLNVVATNSIIADITKNIAGDK 54
>FLAGELLIN#Flagellin signature. Length = 507 Score = 34.6 bits (79), Expect = 0.003 Identities = 36/344 (10%), Positives = 83/344 (24%), Gaps = 19/344 (5%) Query: 1132 MGALAGGSVSSSDQAMNDAALQIAASQGLAPAGSIAGMEQLSAQATEAPAGKAGKQLGDL 1191 + L+ + + ++ + ++Q Q L ++ Q + + + Q+G Sbjct: 91 VRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQFNGVKVLSQDNQMKIQVGAN 150 Query: 1192 SGSALNTQLASMGQQVGDSVNSAYAAGGMGGVDVAGKVTEAAQHLSQVPGQIQNAVTNAD 1251 G + L + + V + + + Sbjct: 151 DGETITIDLQKIDVKSLGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVN 210 Query: 1252 AGSSGASFGQMAQGAAGIAGVAGVIGAAGAASSAAQGAGTVQGAMGNAAAGAGMINNAVS 1311 +G+ A A + A A I A+ Sbjct: 211 SGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIK 270 Query: 1312 GGATGSTGAAHVVNASHGPVAPGQAHYQESGHAQAFVQNNQANTAHTANTRAPSSAQIMG 1371 GG G T V + + + T N + Sbjct: 271 GGKEGDTFDYKGVTFTIDTKT---------------GNDGNGKVSTTINGEKVTLTVADI 315 Query: 1372 ANVAGSLASQAVRGIGQPGQMGANVRDAMGGSGRS----GGRGGATQGGRGAQRSGVSAK 1427 A ++ + ++ N + ++ A +G + V+ Sbjct: 316 TAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGA 375 Query: 1428 NGIRAQRGQKPSVTGQAMNAAMRSAAVSGRMANMDGNSVGGTEA 1471 G K ++ G+ M ++ VS + + T Sbjct: 376 EYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTAN 419
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 28.9 bits (64), Expect = 0.020 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 149 MTLRQGLYAGREKISRDDAKRARAEKKLT--KQQAKEAKK---------QRKLDAIYSAQ 197 Q L A R+ + RD A+K+L Q+ +E K +R LDA A+ Sbjct: 301 EHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREAK 360 Query: 198 QAEETLAQQAQSEPEESD 215 + E Q+ + + + S+ Sbjct: 361 KQLEAEHQKLEEQNKISE 378
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 35.8 bits (82), Expect = 2e-04 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 8/125 (6%) Query: 177 AEAQKAAQAQATQAQAPQVAPQPVMQNQQFQAPVPQGQQPAYAGAP-VYADAVAHATAQQ 235 A A + + + Q + Q Q ++ A V A+ + AQ Sbjct: 1029 APATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQS 1088 Query: 236 QAAAAQAPQAPAGNPFNQPPA-VAAALAPQTQP-PAVAAALAP-----QTQQPAAQPQMD 288 + + A +TQ P V + ++P +T QP A+P + Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 289 NEPPF 293 N+P Sbjct: 1149 NDPTV 1153 Score = 30.0 bits (67), Expect = 0.014 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 3/118 (2%) Query: 175 QAAEAQKAAQAQATQAQ-APQVAPQPVMQNQQFQAPVPQGQQPAYAGAPVYADAVAHATA 233 E ++ A+ + + Q P+V Q + +Q + PQ +PA P + Sbjct: 1104 ATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA-EPARENDPTVNIKEPQSQT 1162 Query: 234 QQQAAAAQAPQAPAGNPFNQPPAVAAALAPQTQPPAVAAALAPQTQQPAAQPQMDNEP 291 A Q + + N QP + + P T QP + N+P Sbjct: 1163 NTTADTEQPAKETSSNV-EQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 5e-05 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 2/118 (1%) Query: 184 NHRQEARRKTSAAKQLERDAQRKRTQAERDK-EIERKRKAQEFVAEQSGKAAAAQRRAEK 242 N +QE++ + + R A+ K ++ + E VA+ + Q K Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE-VAQSGSETKETQTTETK 1101 Query: 243 KAAKQARVDELVAQKQAAQEQKTHCKRDKQRAKKAQGRKVGAVDNSAVDDVLAYAEKT 300 + A + ++ + + QE + + ++++ + A D + E Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159
>FRAGILYSIN#Fragilysin metallopeptidase (M10C) enterotoxin signature. Length = 405 Score = 30.8 bits (69), Expect = 0.016 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Query: 497 ISKKLQDVATEVYERHGVKLHCSQKVMEFLLVDQVEESAESGGARGAVRSLQ 548 +S ++QD A VY HG+K + + F+L E S SG A+ + Sbjct: 245 VSAQMQDAANSVYAVHGLKRYVN---FHFVLY-TTEYSCPSGDAKEGLEGFT 292
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 28.9 bits (65), Expect = 7e-04 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%) Query: 19 REEGITHEDTLH-------MLNDMMAMKRSGEV 44 R+E I ED LH + +D AM R GEV Sbjct: 340 RKETIAAEDILHDIGAFSIISSDSQAMGRVGEV 372
>DPTHRIATOXIN#Diphtheria toxin signature. Length = 567 Score = 31.6 bits (71), Expect = 0.005 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Query: 132 AVEPGYIVKPRLYNFAEYGVPQFRERVLIVGIRRDTGFDFKHPAPTHGPRGDMPYKTAG- 190 A PG+ +P L++ + ++ G + ++G D K A + P AG Sbjct: 411 AYSPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAE------NTPLPIAGV 464 Query: 191 --EALKGVKDVPTNNNHMKIMPRTVEVLKRIPEGENFTAIPKDDPYYVKGMISHVYRRLH 248 + G DV + H+ + R + + R +G+ PK Y G+ ++++ H Sbjct: 465 LLPTIPGKLDVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFH 524 Query: 249 RDEPSK 254 R K Sbjct: 525 RSSSEK 530
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.4 bits (68), Expect = 0.040 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 17/234 (7%) Query: 542 RAKKRELIIAGSTRAYPRIVTDYEQIVDLLEKRDEERKIKEEEAAALATLEAEQETRALA 601 A+ E + A P T E + + ++ + + E++A E + R +A Sbjct: 1017 IARVDEAPVPPPAPATPSETT--ETVAENSKQESKTVEKNEQDAT-----ETTAQNREVA 1069 Query: 602 AAEAQAQALLLEHNPWLRDLSDEEVTALTEQEIINNVE----AALQIEEEEEEARALAAA 657 + N + S+ + T TE + VE A ++ E+ +E + + Sbjct: 1070 KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV 1129 Query: 658 EPAIQQYLSQFAFDEFPDDDNVANTVVHVAPQPILHQAVPADVTVQSSTAPVTPVVADLE 717 P +Q + E P +N + A ++S+ PV Sbjct: 1130 SPKQEQSETVQPQAE-PARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTT 1188 Query: 718 VTT---VAADPVEPTIVAAQPEVDDNLVYSTSTPNSHSDVIAVNSDTSENAAVN 768 V T V +P T QP N S N H + E A + Sbjct: 1189 VNTGNSVVENPENTTPATTQPT--VNSESSNKPKNRHRRSVRSVPHNVEPATTS 1240
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 43.9 bits (103), Expect = 1e-06 Identities = 36/191 (18%), Positives = 56/191 (29%), Gaps = 27/191 (14%) Query: 235 PYQAQ-PQYQQATPAAAPQQYQAPQPQYQ---------QSAPQAQPAPAPVAQFQQAAPQ 284 P + Q T P QA P AP PAPA ++ + + Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAE 1042 Query: 285 APAQPAQQQYQAPLPAGNPLAAGQPVAPQAPLNQPTPA-----------VQQAMPTQAPQ 333 Q ++ + A A + VA +A N ++ T+ + Sbjct: 1043 NSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKE 1102 Query: 334 TPAQPVQPPAPQAGSAFTDAPGAVPQAPAVQAAP------AVAQAPVAPVVDMTEPASPW 387 T + A + P Q Q A P V++ EP S Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 388 DLPAAPSQPAQ 398 + A QPA+ Sbjct: 1163 NTTADTEQPAK 1173 Score = 38.9 bits (90), Expect = 4e-05 Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 11/157 (7%) Query: 234 QPYQAQPQYQQATPAAAPQQYQAPQP----QYQQSAPQAQPAPAPVAQFQQAAPQAPAQP 289 + Q ++ A Q Q + Q + +A + Sbjct: 1057 DATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVET 1116 Query: 290 AQQQYQAPLPAGNPLAAGQP--VAPQA-PLNQPTPAVQQAMPTQAPQTPAQPVQPPAPQA 346 + Q + + Q V PQA P + P V P T A QP A Sbjct: 1117 EKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQP----A 1172 Query: 347 GSAFTDAPGAVPQAPAVQAAPAVAQAPVAPVVDMTEP 383 ++ V ++ V +V + P T+P Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Score = 33.1 bits (75), Expect = 0.002 Identities = 39/217 (17%), Positives = 64/217 (29%), Gaps = 7/217 (3%) Query: 194 NAPPKDTIQL-VPNEVAAGQDQSTTDASGLPLPGQGYSAPDQPYQAQPQYQQA-TPAAAP 251 N + IQ VP+ + ++ + D + +P P + A+ Q++ T Sbjct: 996 NITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNE 1055 Query: 252 QQYQAPQPQYQQSAPQAQPAPAPVAQFQQAAPQAPAQPAQQQYQAPLPAGNPLAAGQPVA 311 Q Q ++ A +A+ Q + A Q + A V Sbjct: 1056 QDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKV- 1114 Query: 312 PQAPLNQPTPAVQ-QAMPTQAPQTPAQPVQPPAPQAGSAFT-DAPGAVPQAPAVQAAPAV 369 + Q P V Q P Q QP PA + P + A PA Sbjct: 1115 -ETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPA- 1172 Query: 370 AQAPVAPVVDMTEPASPWDLPAAPSQPAQPAQGITYP 406 + +TE + + P T P Sbjct: 1173 KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Score = 33.1 bits (75), Expect = 0.003 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 5/149 (3%) Query: 230 SAPDQPYQAQPQYQQATPAAAPQ---QYQAPQPQYQQSAPQAQPAPAPVAQFQQAAPQAP 286 + + + + P+ Q Q Q + PQA+PA PQ+ Sbjct: 1102 ETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQ 1161 Query: 287 AQPAQQQYQAPLPAGNPLAAGQPVAPQAPLNQPTPAVQQAMPTQAPQTPAQPVQPPAPQA 346 Q QPV +N V+ T T + + Sbjct: 1162 TNTTADTEQPA--KETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKP 1219 Query: 347 GSAFTDAPGAVPQAPAVQAAPAVAQAPVA 375 + + +VP + ++ VA Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSSNDRSTVA 1248 Score = 31.6 bits (71), Expect = 0.006 Identities = 21/155 (13%), Positives = 35/155 (22%), Gaps = 15/155 (9%) Query: 237 QAQPQYQQATPAAAPQQYQAPQPQYQQSAPQAQPAPAP-----VAQFQQAAPQAPAQPAQ 291 + Q + T ++ + + Q P+ +P QA P P Sbjct: 1094 ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 292 QQYQAPLPAGNPLAAGQPVAPQAPLNQPTPAVQQAMPTQAPQTPAQP-------VQPPAP 344 + QP A + N P + P QP Sbjct: 1154 NIKEPQSQTNTTADTEQP-AKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVN 1212 Query: 345 QAGS--AFTDAPGAVPQAPAVQAAPAVAQAPVAPV 377 S +V P + + V Sbjct: 1213 SESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTV 1247
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 26.3 bits (58), Expect = 0.022 Identities = 11/47 (23%), Positives = 19/47 (40%) Query: 2 PRKTYTEEFKRDAVALYENSAGTSIQKIANDLGINRMTLKNWITKYG 48 E + + + + K A+ LG+NR TL+ I + G Sbjct: 428 LYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELG 474
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 35.0 bits (80), Expect = 3e-04 Identities = 40/223 (17%), Positives = 64/223 (28%), Gaps = 38/223 (17%) Query: 60 QDPGFGLFTTNPVKHTDEHIGAL----YFSDLPGISNLTCTANYIGGKFWTTAHHCVEG- 114 + L + + TD G Y + +G T H V+ Sbjct: 65 EHANVILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDAT 124 Query: 115 -----RSRFVGFIEQSDGQYAG---IEHVYTKSSDYDIALIKVGSGIDAEQFSLTRSRPA 166 + D G E + S + D+A++K + Sbjct: 125 HGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIG------- 177 Query: 167 VGKMLEVVGFAVVNPFSSRATMEVTNSNTVANYPMSNLYYKDVFSAKPAGSFPYV----- 221 EVV A S+ A +V + TV YP S Sbjct: 178 -----EVVKPA---TMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAMQYD 229 Query: 222 --ISGGDSGAAVW--SGETMYGIASGSNGSTKNLAANVGPHVS 260 +GG+SG+ V+ E + GI G + N A + +V Sbjct: 230 LSTTGGNSGSPVFNEKNEVI-GIHWGGVPNEFNGAVFINENVR 271
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.026 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 155 GKYAGRPKALDKEQIQEAKDMIAQGETKSAVAKHFGINRSTLYEYLK 201 G Y ++ I A + A + A G+NR+TL + ++ Sbjct: 427 GLYDRVLAEMEYPLILAA--LTATRGNQIKAADLLGLNRNTLRKKIR 471
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 27.5 bits (60), Expect = 0.031 Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 12/153 (7%) Query: 22 AATIMATGALAGTAPQATAAV--DTTAPYVSYVVDIP-GKVGEPIKPQYLTISDQSAYTV 78 A ++MA G + T TA D T V Y + + K+G P ++ S TV Sbjct: 295 APSVMAVGFASLTYSSRTAEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAKASG-TV 353 Query: 79 TFKYMPSWLKYDANKKMLYGTPTEVDVWTPE-VHVVDAHGNKT--VRYFTVVAVPANTAP 135 + + N L + V P+ V V A N T + TV + A P Sbjct: 354 DLPMRLT-NEARGNTTTL-SVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPP 411 Query: 136 T--TTTPSTPKPS-TPQVTTPTTPKAPTLPKST 165 T TP++P + P TTP PK + + Sbjct: 412 LILTWTPASPPGNQNPSSTTPVVPKPVPVYEGA 444
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 36.1 bits (83), Expect = 4e-04 Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 22/139 (15%) Query: 442 DDLLSGDGLFGPNITDGDGNLPSVDDGKDGDDGSDGSDGRDGVVAIDVVDNADGTVTVTL 501 DD+ + L+G N+T D G + + RD D++ + Sbjct: 249 DDIAAIQRLYGANMTTR---------TGDSVYGFNSNTDRD---FYTATDSSKALIFSVW 296 Query: 502 SDGTTFTLD-AGQDGKDGLDGLDGTGLTLESATPDEDGNITYVLSDGTEFTVRNGVDGSD 560 G T T D +G ++ S GN++ E G Sbjct: 297 DAGGTDTFDFSGYSNNQRINL----NEGSFSDVGGLKGNVSIAHGVTIE-----NAIGGS 347 Query: 561 GKDGKDGVNGTDGVDGSDG 579 G D G + + + G G Sbjct: 348 GNDILVGNSADNILQGGAG 366
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 31.5 bits (71), Expect = 0.005 Identities = 26/162 (16%), Positives = 44/162 (27%), Gaps = 10/162 (6%) Query: 57 TGDITFHFTDGTFVTLKAGVDGKDGTDGQDGVIGKDATIVDVATESNGDVKLTFSDGTVV 116 TGD + F T D G T +N + L + V Sbjct: 266 TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDV 325 Query: 117 TIPAAKDGVDGEDGKDGEDATVVSTATD-----ANGNIVITFSDGS-VLVVANGKDGNDG 170 + + + + + + + ++ G+ VL G D G Sbjct: 326 GGLKGNVSIAHGVTIE----NAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADTLYG 381 Query: 171 SDGQDGADGENGKDGENGANATIVDQIANDDGSITIVFSDGS 212 G+D +G+D A I D D F + Sbjct: 382 GAGRDTFVYGSGQDSTVAAYDWIADFQKGIDKIDLSAFRNEG 423
>CABNDNGRPT#NodO calcium binding signature. Length = 479 Score = 32.6 bits (74), Expect = 0.008 Identities = 46/210 (21%), Positives = 63/210 (30%), Gaps = 31/210 (14%) Query: 255 GKDGEDGKDGEDGKDLTVTDTYINDDGDTVVELSDGSTII-VKKGTDGKDGADGSD---G 310 + E G D + DD + L + G + D Sbjct: 229 WGENETGADYNG----HYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNTDRDFYTA 284 Query: 311 ADGVSITVENSYVDADGNTVVEFSDGS-NVTINKGEKGDKGDAGADGEDGADGESITVVN 369 D + S DA G +FS S N IN E G G SI Sbjct: 285 TDSSKALI-FSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKGNV-----SIAHGV 338 Query: 370 TSNDAEGNTLVELSDGTVITINKGD---KGDAGADGEDGSNGADGESITVIETRFDADGN 426 T +A G S ++ N D +G AG D G GAD T + G Sbjct: 339 TIENAIGG-----SGNDILVGNSADNILQGGAGNDVLYGGAGAD--------TLYGGAGR 385 Query: 427 TVVVFSNGTEITINKGEKGDKGDTGEDGKD 456 V+ +G + T+ + G D D Sbjct: 386 DTFVYGSGQDSTVAAYDWIADFQKGIDKID 415
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.8 bits (64), Expect = 0.011 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 109 RLDTSW-DFAT---LGVRPESAGRGLGSALIKEALLRVSESDHRRVSLETSAESNVS--- 161 ++ ++W +A + V + +G+G+AL+ +A+ E+ + LET + N+S Sbjct: 81 KIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQ-DINISACH 139 Query: 162 LYERHGFKV 170 Y +H F + Sbjct: 140 FYAKHHFII 148
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.4 bits (68), Expect = 0.004 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 14/74 (18%) Query: 26 IVVLVGLPGAGKSTIGRRLARALNTELVDSDELIERATGK-----ACGAVFSELGE-PAF 79 VVL G G GKST+ L SD + TGK G V EL E AF Sbjct: 598 SVVLEGTGGIGKSTLINTLV----GLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMTAF 653 Query: 80 RELEAIHVAEALKS 93 R + AEA+K+ Sbjct: 654 RRAD----AEAVKA 663
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 28.2 bits (63), Expect = 0.049 Identities = 10/16 (62%), Positives = 10/16 (62%) Query: 230 AVFAGNTIHAVHTAGA 245 A G TIHA HT GA Sbjct: 263 AAIKGRTIHAYHTEGA 278
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.3 bits (68), Expect = 0.017 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 1/90 (1%) Query: 503 RPAPTTNSPIIALPPTWIIGPEDPESTDPTAPTEPTEPSEPVATDEPSETSEQTSPLLAP 562 PAP + + P + P+ + P EP EP+ P P Sbjct: 43 LPAPAQPISVTMVAPADLEPPQAVQP-PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 101 Query: 563 STTPETEPETTEAPVETTEASSEITVSEVN 592 P+ + + + S N Sbjct: 102 KPKPKPVKKVEQPKRDVKPVESRPASPFEN 131
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 49.7 bits (118), Expect = 1e-09 Identities = 23/90 (25%), Positives = 40/90 (44%) Query: 1 MTIDEGRRQFEVNVFGAMALTRLVLPHMQKQKWGTIVNITSMGGKIYTPLGGWYHGTKFA 60 ++ +E F VN G +R V +M ++ G+IV + S + Y +K A Sbjct: 104 LSDEEWEATFSVNSTGVFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAA 163 Query: 61 LEALSDALRLEVAPFGIDVVVIEPGGIATE 90 + L LE+A + I ++ PG T+ Sbjct: 164 AVMFTKCLGLELAEYNIRCNIVSPGSTETD 193
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 43.0 bits (101), Expect = 7e-07 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 102 VANLGSHREPDLEALAAAQPSLIINGQRFAQYYDDIIALNPDATVVELDPRDGE-PLDQE 160 V ++G EP+LE L +PS ++ + + + + P + DG+ PL Sbjct: 78 VIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRG---FNFSDGKQPLA-M 133 Query: 161 LIRQAETLGEIFGEEEDAAKIVADFESALERAKTAYA 197 + + ++ + A +A +E + K + Sbjct: 134 ARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFV 170
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.4 bits (66), Expect = 0.009 Identities = 9/33 (27%), Positives = 16/33 (48%) Query: 9 PPKAPTWLGWVLMIGGIIGLILSVIIMAEKLAI 41 + P + + +M +I ILSV+ E +A Sbjct: 53 VSRRPRLVAYFIMGFLVIAFILSVLGQVEIVAT 85
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 66.5 bits (162), Expect = 1e-14 Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 20/180 (11%) Query: 53 NPQRVVVLEPLELDTAIALGITPVGAAVANNVTGIPAYLG----VDGIEPVGTVSEPNIE 108 +P R+V LE L ++ +ALGI P G A + ++ D + VG +EPN+E Sbjct: 34 DPNRIVALEWLPVELLLALGIVPYGVA---DTINYRLWVSEPPLPDSVIDVGLRTEPNLE 90 Query: 109 AIAALEPDLILGTDSRHAEIYDRLESIAPTVFMT-----THVDPWKDNVVFIGDALGKKQ 163 + ++P ++ + + + + L IAP + + ++ + D L + Sbjct: 91 LLTEMKPSFMVWS-AGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQS 149 Query: 164 ESEDLIQGFNDKCEEIKSEHDVEGKT----VNMIRPRDEQTMSLYGPTSFAGSSLECAGL 219 +E + + D +K G +I PR M ++GP S L+ G+ Sbjct: 150 AAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRH---MLVFGPNSLFQEILDEYGI 206
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 33.4 bits (76), Expect = 0.001 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 22/154 (14%) Query: 183 GRKIGITAGHC--GKSGDAVR----------SADSFWVGDTGTVVYNAPNADYSVIEFGS 230 G+ +T H GD + + D ++++F Sbjct: 110 GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSP 169 Query: 231 NAELSNTYNGVTANAVGGGVTN--GQEVCKNGVATGYTCGLVWTADERMTMSQVCAGR-- 286 N + + V + Q + G +W + ++T + A + Sbjct: 170 NEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITYLKGEAMQYD 229 Query: 287 -----GDSGAPLI-ADGRVVGLVSGGVIPDYNLA 314 G+SG+P+ V+G+ GGV ++N A Sbjct: 230 LSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGA 263
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 32.1 bits (73), Expect = 0.003 Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 28/217 (12%) Query: 55 QARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSIPVMAKARIGHF-- 112 + +I + +A AL+ V S M + + E A I ++K +GH Sbjct: 91 KGKIENE-QMNAEYALKEVSDMFVSM--FESMDNEYMKE---RAADIRDVSKRVLGHLIG 144 Query: 113 VEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIR 172 VE L + + + +E L+P+D T +NK +F F T++G R + A M R Sbjct: 145 VETGSLATIAEETVIIAEDLTPSD-TAQLNK-QFVKGFA---TDIGG---RTSHSAIMSR 196 Query: 173 SKGE---AGTGDVSEAVRHLRTI-----RGDINRLRSLDEDELFVAAKEF----QAPYDL 220 S GT +V+E ++H + G + + +E + + + + + Sbjct: 197 SLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAK 256 Query: 221 VREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGV 257 + ST K +A + TP D V G EG+ Sbjct: 257 LVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGI 293
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 0.034 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 228 KVAGYWLDRYDLLTKENSTFTGASYTDINAQLPAKIILLVIALFVAIAFFSAIFLKDLRI 287 K+ G+ YD+++ + + L K +V FS + L I Sbjct: 436 KITGHVSFGYDVVSDILKIKDTGDWKPLFLTL-EKKAADAGVSYVVALLFSLLAGTTLGI 494 Query: 288 PGLAVVLMLLSSVI 301 G+A+V +L S I Sbjct: 495 WGIAIVTGILCSYI 508
>SECA#SecA protein signature. Length = 901 Score = 1124 bits (2908), Expect = 0.0 Identities = 420/861 (48%), Positives = 568/861 (65%), Gaps = 46/861 (5%) Query: 4 LSKVLRVGEGRAVKRLHKIADQVIALEDKFANLTDEELKAKTAEFKERIAGGEGLDEIFL 63 L+KV R ++R+ K+ + + A+E + L+DEELK KTAEF+ R+ GE L+ + Sbjct: 6 LTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLENLIP 65 Query: 64 EAFATAREAAWRVLGQKHYHVQIMGGAALHFGNVAEMRTGEGKTLTCVLPAYLNALEGKG 123 EAFA REA+ RV G +H+ VQ++GG L+ +AEMRTGEGKTLT LPAYLNAL GKG Sbjct: 66 EAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKG 125 Query: 124 VHVVTVNDYLAKRDAEMMGRVHRYLGLEVGVILSDMRPDERREAYAADITYGTNNELGFD 183 VHVVTVNDYLA+RDAE + +LGL VG+ L M +REAYAADITYGTNNE GFD Sbjct: 126 VHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFD 185 Query: 184 YLRDNMARSLSDLVQRGHNYAIVDEVDSILIDEARTPLIISGPVDGTSQFYNVFAQIVPR 243 YLRDNMA S + VQR +YA+VDEVDSILIDEARTPLIISGP + +S+ Y +I+P Sbjct: 186 YLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPH 245 Query: 244 MTK-----------DVHYEVDERKKTVGVKEEGVEYVEDQLGI-------DNLYAPEHSQ 285 + + + H+ VDE+ + V + E G+ +E+ L ++LY+P + Sbjct: 246 LIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 305 Query: 286 LVSYLNNAIKAQELFTRDKDYIVRNGEVMIVDGFTGRVLAGRRYNEGMHQAIEAKERVEI 345 L+ ++ A++A LFTRD DYIV++GEV+IVD TGR + GRR+++G+HQA+EAKE V+I Sbjct: 306 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQI 365 Query: 346 KNENQTLATVTLQNYFRLYTKLAGMTGTAETEAAELNQIYKLDVIAIPTNRPNQREDLTD 405 +NENQTLA++T QNYFRLY KLAGMTGTA+TEA E + IYKLD + +PTNRP R+DL D Sbjct: 366 QNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPD 425 Query: 406 LVYKTQEAKFAAVVDDIAERTEKGQPVLVGTVSVERSEYLSQLLTKRGIKHNVLNAKHHE 465 LVY T+ K A+++DI ERT KGQPVLVGT+S+E+SE +S LTK GIKHNVLNAK H Sbjct: 426 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHA 485 Query: 466 QEAQIVAQAGLPGAVTVATNMAGRGTDIVLGGNPEILLDIKLRERGLDPFEDEESYQEAW 525 EA IVAQAG P AVT+ATNMAGRGTDIVLGG+ + + + + Sbjct: 486 NEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVA---------------ALENPT 530 Query: 526 DAELPAMKQRCEERGDKVREAGGLYVLGTERHESRRIDNQLRGRSARQGDPGSTRFYLSM 585 ++ +K + R D V EAGGL+++GTERHESRRIDNQLRGRS RQGD GS+RFYLSM Sbjct: 531 AEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSM 590 Query: 586 RDDLMVRFVGPTMENMMNRLNVPDDVPIESKTVTNSIKGAQAQVENQNFEMRKNVLKYDE 645 D LM F + MM +L + IE VT +I AQ +VE++NF++RK +L+YD+ Sbjct: 591 EDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDD 650 Query: 646 VMNEQRKVIYSERREILESADISRYIQNMIEETVSAYVDG-ATANGYVEDWDLDKLWNAL 704 V N+QR+ IYS+R E+L+ +D+S I ++ E+ A +D E WD+ L L Sbjct: 651 VANDQRRAIYSQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERL 710 Query: 705 EALYDPSINWTDLVEGSEYGKPGELSAEDLRTALVNDAHAEYAKLEEAVSAIGGEAQIRN 764 + +D + + ++ K EL E LR ++ + Y + EE V G +R+ Sbjct: 711 KNDFDLDLPIAEWLD-----KEPELHEETLRERILAQSIEVYQRKEEVV----GAEMMRH 761 Query: 765 IERMVLMPVIDTKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQKEGGDMFNGMKDGIKEE 824 E+ V++ +D+ W+EHL MDYL++GI LR AQ+DP EY++E MF M + +K E Sbjct: 762 FEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYE 821 Query: 825 TVRQLFLLRKQFIKQDAEVAD 845 + L ++ ++ EV + Sbjct: 822 VISTLSKVQ---VRMPEEVEE 839
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.9 bits (77), Expect = 9e-04 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 34 LVLVGPSGCGKSTTLRALAGLEGVESGVIKI-DGKD 68 +VL G G GKST + L GL+ I GKD Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 67.8 bits (165), Expect = 2e-14 Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 31/293 (10%) Query: 141 TVDSATYNGTLYALPQNTNGQLLFRNTEIIPEAPANWADLVESCTLAEEAGVDCLTTQLK 200 T D+ YNG L A P L N +++P P W ++ + G L L+ Sbjct: 119 TWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQ 178 Query: 201 QYEGLSVNTIGFIEGWGGSVLD------DDGNVTVDSDDAKAGLQALVDGFDDGTISKAS 254 + T I GG D +V VD+ AKAGL LVD + ++ + Sbjct: 179 E----PYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADT 234 Query: 255 LAATEEETNLAFTEGQTAYAINWPYMYTNSEEAEATAG-----KFEVQPLVGKDGVGVST 309 + E AF +G+TA IN P+ ++N + ++ G F+ QP K VGV Sbjct: 235 DYSIAEA---AFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQP--SKPFVGV-- 287 Query: 310 LGGYNNGINVNSENKATARDFIEFIINEENQTWFADNSFPPVLASIYDDESLVEQYPYLP 369 + GIN S NK A++F+E + + + P ++ +S E+ P Sbjct: 288 ---LSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVAL---KSYEEELAKDP 341 Query: 370 ALKESLENAAPRPVSPFYPAISK---AIQDNAYAALNGNVDVDQATTDMKAAI 419 + ++ENA + P P +S A++ A +G VD+A D + I Sbjct: 342 RIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRI 394
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 1e-04 Identities = 35/165 (21%), Positives = 54/165 (32%), Gaps = 23/165 (13%) Query: 218 RIANQEADLVEQTQLDAN-KAAADAQVGEARAQAMQAERLADEKARL---------EVLR 267 + N E + QT N + Q + E ++A + E Sbjct: 979 DLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTE 1038 Query: 268 QQAEN-KQIELEAEVN--KVADAERYRR------KQEVEADTFEQTRRAQAQVEIAEAEA 318 AEN KQ E N + R K V+A+T + AQ+ E E + Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANT-QTNEVAQSGSETKETQT 1097 Query: 319 TAAKVRAMAEAEA---VRLKGQAEADAIKAKAEAYRENQEALLAQ 360 T K A E E V + E + ++ +E E + Q Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQ 1142 Score = 35.8 bits (82), Expect = 4e-04 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 5/146 (3%) Query: 191 LGAPEIQAKKQAAEIAETEAARAIAKSRIANQEADLVEQTQLDANKAAADAQVGEARAQA 250 A + + + E E +A A++R +EA + N+ A Q Sbjct: 1039 TVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGS-ETKETQT 1097 Query: 251 MQAERLAD----EKARLEVLRQQAENKQIELEAEVNKVADAERYRRKQEVEADTFEQTRR 306 + + A EKA++E + Q K + + ++ + + + E D + Sbjct: 1098 TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKE 1157 Query: 307 AQAQVEIAEAEATAAKVRAMAEAEAV 332 Q+Q AK + + V Sbjct: 1158 PQSQTNTTADTEQPAKETSSNVEQPV 1183
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 49.2 bits (117), Expect = 8e-09 Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 33/247 (13%) Query: 61 PERVVTLGVTDADIVLALGTVPVGNT---GYKFFENGLGPWTDELVEGKELTLLDSDSTP 117 P R+V L +++LALG VP G Y+ W E + + + P Sbjct: 35 PNRIVALEWLPVELLLALGIVPYGVADTINYRL-------WVSEPPLPDSVIDVGLRTEP 87 Query: 118 DLEQVAALEPDLIIGVSAGFDDVVYEQLSDIAP--VVARPAGTAAYAVAREEATNLVARA 175 +LE + ++P ++ SAG+ E L+ IAP G A+AR+ T + Sbjct: 88 NLELLTEMKPSFMVW-SAGYGP-SPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLL 145 Query: 176 MGQSEKGQELNEETDALIQAARDENPSFDGKTGTVILPYQ----GKYGAYLPGDARGQFL 231 QS L + + I++ + P F + +L + P + L Sbjct: 146 NLQSAAETHL-AQYEDFIRSMK---PRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEIL 201 Query: 232 DSLGISLPEAVLSRDTGDSFFVDVPAESVKDV----DGDVLLV-LSNDENLDITAENPLF 286 D GI P A G++ F A S+ + D DVL N +++D PL+ Sbjct: 202 DEYGI--PNAW----QGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLW 255 Query: 287 ETLNVVQ 293 + + V+ Sbjct: 256 QAMPFVR 262
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 54.4 bits (131), Expect = 5e-10 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 23/128 (17%) Query: 47 RVLVTGATGYIGGRLITELLAAGFQVRA---------TSRKKTSLQRFDWYEDVEAVEAD 97 + LVTGA G+IG + LL AG QV S K+ L+ + + D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLA-QPGFQFHKID 60 Query: 98 LTDATELDTLFKD--VDVVYYLVHSMGGKNVDFEEQEQRT--------AENVIQAADQAG 147 L D + LF + V+ H + V + + N+++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLA---VRYSLENPHAYADSNLTGFLNILEGCRHNK 117 Query: 148 IKQIVYLS 155 I+ ++Y S Sbjct: 118 IQHLLYAS 125
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 61.9 bits (150), Expect = 3e-14 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 22/162 (13%) Query: 52 LALPE---IENSIDLERYKGKWYQVAAIPQPFSLQCSHDVTADYGVIDSDTISVTNKCGT 108 L +PE + +L Y GKWY+VA + F S VTA+Y V + ISV N+ Sbjct: 17 LGMPESVKPVSDFELNNYLGKWYEVARLDHSFERGLSQ-VTAEYRVRNDGGISVLNRG-- 73 Query: 109 FFGP-----SVIEGSAKVV---SNASLKVSFPGIPFQSEDNQANYRVTYIE-DDYSLAIV 159 + EG A V ++ LKVSF G PF +Y V ++ ++YS A V Sbjct: 74 -YSEEKGEWKEAEGKAYFVNGSTDGYLKVSFFG-PF-----YGSYVVFELDRENYSYAFV 126 Query: 160 GSPSRSSGFILSRTPQLSSDQWSHVRNITEDSGWWPCAFITV 201 P+ ++LSRTP + ++++ G+ I V Sbjct: 127 SGPNTEYLWLLSRTPTVERGILDKFIEMSKERGFDTNRLIYV 168
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 65.2 bits (159), Expect = 7e-13 Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 26/246 (10%) Query: 88 LSELDIVSDEVSPA-IPSEDG-RAVQVFVPLNPSAELTESVEKLSETLTQQTPDYVSTYV 145 S + +G ++++ P +++ + ++ + Sbjct: 800 FSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGYDW- 858 Query: 146 TGPAGFTADLSAAFAGIDGLLLAVALAAVLVILVIVYRSFILPIAVLATSLFALTVALLV 205 G + + L+A++ V + L +Y S+ +P++V+ + LL Sbjct: 859 ---TGMSYQERLSGNQA-PALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914 Query: 206 VWWLAKWDILLLSGQTQGIL----FILVIGAATDYSLLYVARFREELRVQQDKGI--ATG 259 L Q + + IG + ++L V F ++L ++ KG+ AT Sbjct: 915 AT---------LFNQKNDVYFMVGLLTTIGLSAKNAILIVE-FAKDLMEKEGKGVVEATL 964 Query: 260 KAIRASVEPILASGSTVIAGLLCLLFSDLKSNSTLGPVASV---GIIFAMLSALTLLPAL 316 A+R + PIL + I G+L L S+ + V G++ A L A+ +P Sbjct: 965 MAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVF 1024 Query: 317 LFVFGR 322 V R Sbjct: 1025 FVVIRR 1030 Score = 47.5 bits (113), Expect = 2e-07 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 17/171 (9%) Query: 526 DASIHD--RNLIIPIVLLVILVILMLLLRSIVAPLLLVVTTVVSFATALGVAALLFNHVF 583 SIH+ + L I+L + +++ L L+++ A L+ + V LG A+L + Sbjct: 334 QLSIHEVVKTLFEAIML--VFLVMYLFLQNMRATLIPTIAVPVVL---LGTFAILAAFGY 388 Query: 584 SFPGADPAVPLYGFVFLVALGIDYNIFLVTRIREETKTHGT--RLGILRGLTVTGGVITS 641 S + ++G V + L +D I +V + + + ++ G + Sbjct: 389 SI----NTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVG 444 Query: 642 AGVVLAATFAALYVIPIL---FLAQIAFIVAFGVLIDTLLVRAFLVPALFY 689 +VL+A F + Q + + + + ++LV L PAL Sbjct: 445 IAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL-SVLVALILTPALCA 494 Score = 36.4 bits (84), Expect = 4e-04 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 23/220 (10%) Query: 108 RAVQVFVPLNPSA---ELTESVEKLSETLTQQTPDYVS-TYVTGPAGFTADLSAAFAGID 163 A + + L A + ++++ L P + Y F I Sbjct: 285 PAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ------LSIH 338 Query: 164 GLLLAVALAAVLVILVIVYRSFILPIAVLATSLFALTVALLVVWWLAKWDILLLSGQTQG 223 ++ + A +LV LV+ F+ + A+ V LL + + ++ T Sbjct: 339 EVVKTLFEAIMLVFLVMYL--FLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMF 396 Query: 224 ILFILVIGAATDYSLLYVARFREELRVQQDKGIATGKAIRASVE----PILASGSTVIAG 279 + +L IG D +++ V RV + + +A S+ ++ + A Sbjct: 397 GM-VLAIGLLVDDAIVVVENVE---RVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAV 452 Query: 280 LLCLLF---SDLKSNSTLGPVASVGIIFAMLSALTLLPAL 316 + + F S + ++L AL L PAL Sbjct: 453 FIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492 Score = 35.6 bits (82), Expect = 7e-04 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 19/164 (11%) Query: 534 LIIPIVLLVILVILMLLLRSIVAPLLLVVTTVVSFATALGVAALLFNHVFSFPGADPAVP 593 ++ I +V+ + L L S P+ +++ + L +AA LFN Sbjct: 874 ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVL-LAATLFNQKNDVYF------ 926 Query: 594 LYGFVFLVALGIDYNIFLVTRIREETKTHGTRLGILRGLTVTGGVITSAGVVLAATFAAL 653 + G + + L I +V ++ + G + T+ + +++ + L Sbjct: 927 MVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG---VVEATLMAVRMRLRPILMTSLAFIL 983 Query: 654 YVIPILF--------LAQIAFIVAFGVLIDTLLVRAFLVPALFY 689 V+P+ + V G++ TLL F VP F Sbjct: 984 GVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLA-IFFVPVFFV 1026
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.003 Identities = 38/192 (19%), Positives = 57/192 (29%), Gaps = 34/192 (17%) Query: 14 RAAKEGRSTDAPRRRRRRSIEDGGVSVAELTGSIPAVKEKPAESKHSSVPIDAPAEP--- 70 K ++ D +I+ SV I V E P VP APA P Sbjct: 984 EVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAP-------VPPPAPATPSET 1036 Query: 71 -EVVEAPKPEPAEEVEVAS--------VEGDVDKQETPERPAP--SNEETMVLRIVDEKD 119 E V + ++ VE +V K+ A +NE E Sbjct: 1037 TETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQ 1096 Query: 120 PISLTTGAFPVVPAVAAKPAPVVRAEKDADVETAVKADFAEVEVDNTDTTQMAVVEEVDE 179 K V E+ A VET + +V + + + + Sbjct: 1097 T-------------TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQA 1143 Query: 180 EPEQENKMSVFA 191 EP +EN +V Sbjct: 1144 EPARENDPTVNI 1155 Score = 30.4 bits (68), Expect = 0.008 Identities = 27/190 (14%), Positives = 53/190 (27%), Gaps = 19/190 (10%) Query: 3 EEKLTVAELMARAAKEGRSTDAPRRRRRRSIEDGGVSVAELTGSIPAVKEKPAESKHSSV 62 EEK V + + S +P++ + +++ + +PA +V Sbjct: 1109 EEKAKVETEKTQEVPKVTSQVSPKQEQSETVQ---------------PQAEPARENDPTV 1153 Query: 63 PIDAPAEPEVVEAPKPEPAEEVEVASVEGDVDKQETPERPAPSNEETMVLRIVDEKDPIS 122 I P A +PA+E + + T S E P Sbjct: 1154 NIKEPQSQTNTTADTEQPAKETSSNVEQ--PVTESTTVNTGNSVVENPENTTPATTQPTV 1211 Query: 123 LTTGAFPVVPAVAAKPAPVVRAEKDADVETAVKADFAEVEVDNTDTTQMAVVEEVDEEPE 182 + + P + + T+ D T T AV+ + + + Sbjct: 1212 NSESSN--KPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQ 1269 Query: 183 QENKMSVFAI 192 A+ Sbjct: 1270 FVALNVGKAV 1279
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 32.9 bits (75), Expect = 0.007 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 39/212 (18%) Query: 179 DVAGWVGVGFTPQRYVELFTNGTDASQITIAVNDGADPMAVRNRIGKNHRDLLPLLPEQI 238 DVA V +G + NG A+ + I + GA+ + I +L P P+ + Sbjct: 264 DVAR-VELGGENYNVIARI-NGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGM 321 Query: 239 IDQTTGDTAR---------QLEFMTYVLLAFAAIALIVGSF------IIANTFAMIVAQR 283 DT ++L F + L + + IA ++ Sbjct: 322 KVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLL---- 377 Query: 284 TGEFALLRSIGVSTFQIGFSVIMEAVFVGLIGGFIGIAVGFGVVNALVQVLN----QFGD 339 G FA+L G+S+ +F G++ +A+G V +A+V V N D Sbjct: 378 -GTFAIL-------AAFGYSINTLTMF-GMV-----LAIGLLVDDAIVVVENVERVMMED 423 Query: 340 TLSSIDITYNAGSFIFPVLFAVTATVLSSISP 371 L + T + S I L + + + P Sbjct: 424 KLPPKEATEKSMSQIQGALVGIAMVLSAVFIP 455
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.0 bits (218), Expect = 3e-22 Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 2 TRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGT 61 IL+ +D+ ++ L L + G+D I + T + + D+V+ D+++P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DVCKELRSV-STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRG 120 D+ ++ +PV++++A+++ + + E GA DY+ KP+ ELI I L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 121 VTETEAEELPLDDQILEGGRVRM 143 ++ E+ D L G M Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAM 146
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 32.3 bits (73), Expect = 0.002 Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 2/61 (3%) Query: 211 PEGEALAPITLNLTNEVVCDEPETPVEPEVPVEPETPVDPETSVDPETPVDPETSVDPEK 270 P PI++ + + P+ P PV P P+ P+ Sbjct: 39 PAPAQ--PISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 96 Query: 271 P 271 Sbjct: 97 K 97 Score = 31.5 bits (71), Expect = 0.004 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 7/84 (8%) Query: 205 VMGTFYPEGEALAPITLNLTNEVVCDEPETPVEPEVPVEPETPV-DPETSVDPETPVDPE 263 V +A+ P EPE EP E PV + P+ P Sbjct: 50 VTPADLEPPQAVQPP------PEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 103 Query: 264 TSVDPEKPGDDNKDDGSNSSSNGD 287 V + D + +S + Sbjct: 104 KKVQEQPKRDVKPVESRPASPFEN 127
>PF05272#Virulence-associated E family protein Length = 892 Score = 31.6 bits (71), Expect = 0.004 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 15 GKKLLDAVSLKAY-PG----EVLGLIGPNGAGKSTLLSVLSGDRLPDSGEVNVG 63 GK +L + PG + L G G GKSTL++ L G ++G Sbjct: 577 GKYILMGHVARVMEPGCKFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG 630
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 51.6 bits (123), Expect = 2e-10 Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 15/171 (8%) Query: 2 TLEAIEDNATRLILERGFDNVTIEDICAEAGISKRTFFNYVESKESV--AIGHTAKLPTD 59 T + I D A RL ++G + ++ +I AG+++ + + + K + I ++ Sbjct: 12 TRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIG 71 Query: 60 EEREAFLATRHENIIDTVFDLVINLFGNHDNSKSGVAGDIMRRRKEIRVKHPELAVQHFA 119 E + A + + + +++I++ +S V + R EI + H V A Sbjct: 72 ELELEYQAKFPGDPLSVLREILIHVL------ESTVTEERRRLLMEI-IFHKCEFVGEMA 124 Query: 120 RFHQAREGLEH----LIVEYFEKWPGSQHLDEPADREAIA--IVGLLISVM 164 QA+ L I + + ++ L A + G + +M Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLM 175
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 24.5 bits (53), Expect = 0.032 Identities = 7/26 (26%), Positives = 15/26 (57%) Query: 9 DSPQALENAESNPLWSQLPAVKNGQL 34 D+ + ++ + PLW +P V+ G+ Sbjct: 241 DNSKDMDALMATPLWQAMPFVRAGRF 266
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 84.8 bits (210), Expect = 5e-20 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 41/298 (13%) Query: 280 RVLVTGAGGSIGSQLCTEIAKYGPAELMMLDRDETGLQQVLINVAGNGLLDTDAV--VLA 337 + LVTGA G IG + + + G +++ +D V + A LL Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAG-HQVVGIDNLNDY-YDVSLKQARLELLAQPGFQFHKI 59 Query: 338 DIREADAMKEIFLKRKPEVVFHAAALKHLPMLEQYPDEGWKTNVLGTLNVLAAAEAVGVE 397 D+ + + M ++F E VF + + + P +N+ G LN+L ++ Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ 119 Query: 398 TFVNIST---------------DKAANPTSVLGHSKRVAEKLTAWYGQNSTSKYLSVRFG 442 + S+ D +P S+ +K+ E + Y +RF Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 443 NVIGSRG--SM-LPTFTRLIMEDKPLTV-THPDVTRFFMTIPEACQLVLQA--------- 489 V G G M L FT+ ++E K + V + + R F I + + +++ Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDVIPHADT 239 Query: 490 ------GGIGRS---GEVLILDMGEPVSILEIAQRMIAMSGKDIDIVFTGLREGEKMH 538 G S V + PV +++ Q + G + L+ G+ + Sbjct: 240 QWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQPGDVLE 297
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 38.7 bits (90), Expect = 2e-05 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 64 AEAGSPTKPLVLLIHGAFGGWYDY-REVIGPLADAGFHVAAIDLRGYGMSDKPPTGYDLR 122 A + PLV+ + G GGW + V G L G+ V Y K P + Sbjct: 44 AASSHTKPPLVIFLSGD-GGWATLDKAVGGILQQQGWPVVGWSSLKYYWKQKDP-----K 97 Query: 123 HAAGELSSVI----AALGHDDALLVGSDTGASIAWAIASMYPERVRGLISLGAI 172 + ++I A G +L+G GA + + + P R R + + Sbjct: 98 DVTQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMPARYRKNVLGAVL 151
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 60.0 bits (145), Expect = 4e-12 Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 48/190 (25%) Query: 220 GSGFVASPDYVVTNAHVVAGTSTVSLDTMI-------------GTRSAEVVFYDPNLDIA 266 SG V D ++TN HVV T G + ++ Y D+A Sbjct: 104 ASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLA 163 Query: 267 VL-YSPDL-------GLDPLPWA-STPLDTGDEAIVMGFPQSGPFNASPARVRERIMITG 317 ++ +SP+ + P + + V G+P Sbjct: 164 IVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP------------------GD 205 Query: 318 SNIYANGQHEREAYSVRGS-------IQSGNSGGPMTNEMGEVVGVVFGAAIDGSDTGYV 370 + + + + ++G GNSG P+ NE EV+G+ +G + G V Sbjct: 206 KPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIHWG-GVPNEFNGAV 264 Query: 371 LTAEEVQERI 380 E V+ + Sbjct: 265 FINENVRNFL 274
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.0 bits (67), Expect = 0.004 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 80 PNVESEPATVN--QRSTPTTSAYEPPATESPEEPTTQIQESPVQPPVPA 126 P VE TV+ +TP + P+ S E ++ E+PV PP PA Sbjct: 983 PEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPA 1031
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 95.7 bits (238), Expect = 4e-25 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 2 SKILLAEDDAGIADFIVRGLIREGFECEVTESGAEAFARAHSGDFDLMVLDLGLPHMDGT 61 + IL+A+DDA I + + L R G++ +T + A + +GD DL+V D+ +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 DVLEQLRNLQVTLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARIK--LRLAK 119 D+L +++ + LP++V++A+ ++ E GA DY+PKPF EL+ I L K Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 HTPQETPTDARVLRN 134 P + D++ Sbjct: 124 RRPSKLEDDSQDGMP 138
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 30.0 bits (67), Expect = 0.048 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 14/98 (14%) Query: 406 IGNSYVVLLLVG-AAIGAVLTFTYSAKLVL-------------GAFVDGPRDMSHVKEAP 451 IG+S L+G IG VL S V G + D+ H++E Sbjct: 156 IGSSDTQRSLLGRIGIGDVLLIRTSRAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEEN 215 Query: 452 VSLWLPAALPGLMSLPLVLVLSLFDAPVSAAATSAAGE 489 + LPGL LP+ L L+ V+ A A G+ Sbjct: 216 NTTETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQ 253
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 43.7 bits (103), Expect = 1e-06 Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 12/185 (6%) Query: 32 VALVATFGGLLFGYDTGVINGALNPMTRELGLT---AFTEGVVTSSLLFGAAAGAMFFGR 88 V L L G+I L + R+L + G++ + A A G Sbjct: 9 VILSTVA---LDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGA 65 Query: 89 ISDNWGRRKTIISLAVAFFVGTMICVFAPSFAVMVVGRVLLGLAVGGASTVVPVYLAELA 148 +SD +GRR ++ V I AP V+ +GR++ G+ G V Y+A++ Sbjct: 66 LSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADIT 124 Query: 149 PFEIRGSLAGRNELMIVVGQLAAFVINAIIGNVFGHHDGVWRYMLAIAAIPAIALFFGML 208 + R G G +A V+ ++G H A AA+ + G Sbjct: 125 DGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAP-----FFAAAALNGLNFLTGCF 179 Query: 209 RVPES 213 +PES Sbjct: 180 LLPES 184 Score = 29.4 bits (66), Expect = 0.038 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%) Query: 76 LFGAAAGAMFFGRISDNWGRRKTIISLAVAFFVGTMICVFAPSFAVMVVGRVLLGLAVGG 135 + + A AM G ++ G R+ ++ +A G ++ FA + VLL + G Sbjct: 257 ILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLA-SGGI 315 Query: 136 ASTVVPVYLAELAPFEIRGSLAGRNELMIVVGQLAAFVINAIIGNVFGHHDGVWRYMLAI 195 + L+ E +G L G + + L + V + ++ W I Sbjct: 316 GMPALQAMLSRQVDEERQGQLQG---SLAALTSLTSIVGPLLFTAIYAASITTWNGWAWI 372 Query: 196 AAIPAIALFFGMLR 209 A L LR Sbjct: 373 AGAALYLLCLPALR 386
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.8 bits (90), Expect = 2e-06 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 12/72 (16%) Query: 54 IAFASYFNEPTRAVIEYIAVLESHQGMGLGSQLLNVVATSFPE------VYLETDDD--- 104 I S +N A+IE IAV + ++ G+G+ LL+ A + + + LET D Sbjct: 80 IKIRSNWNG--YALIEDIAVAKDYRKKGVGTALLH-KAIEWAKENHFCGLMLETQDINIS 136 Query: 105 AVDFYRKLGFVI 116 A FY K F+I Sbjct: 137 ACHFYAKHHFII 148
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.6 bits (69), Expect = 0.002 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 4 AQHKLNSSMQFRTVMRKGRRAGSKTVVVHLWDSAESLDGTEKQGEVASFGG-PRFGLVVS 62 AQ + + +F V + GS VV L D A G E +A G P GL + Sbjct: 236 AQTRFKNPEEFGKVTLRVNSDGS---VVRLKDVARVELGGENYNVIARINGKPAAGLGIK 292 Query: 63 KAVG-NAVVRHRTSRRLRHICASIAEKSPE 91 A G NA+ T++ ++ A + P+ Sbjct: 293 LATGANAL---DTAKAIKAKLAELQPFFPQ 319
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 127 bits (321), Expect = 3e-35 Identities = 61/296 (20%), Positives = 113/296 (38%), Gaps = 81/296 (27%) Query: 2 LNFIYWPISAILWFWHKAFSFVLSPDSGITWALSIMFLTFTVRMVLVKPMVNTMRSQRKM 61 L FI P+ +L + H W SI+ +TF VR ++ S KM Sbjct: 333 LWFISQPLFKLLKWIHSFVG---------NWGFSIIIITFIVRGIMYPLTKAQYTSMAKM 383 Query: 62 QDMAPKMQAIREKYKNDQQKMMEETRKLQKEVGVNPIAGCLPMLVQIPVFLGLFHVLRSF 121 + + PK+QA+RE+ +D+Q++ +E L K VNP+ GC P+L+Q+P+FL L+++L Sbjct: 384 RMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMG- 442 Query: 122 NRTGSGVGQLEMTVEQNANTPNYIFGVDEVQSFLRADLFGAPLSSYITMPADAFDAFLGL 181 +L AP + +I + ++ Sbjct: 443 ----------------------------------SVELRQAPFALWIHDLSAQDPYYI-- 466 Query: 182 DVSRLNIALVAAPMILIIVVATHMNARLSVNRQEARKAAGKQQAASSDQMAMQMQMMNKM 241 + +++ V ++S + M M + Sbjct: 467 -------------LPILMGVTMFFIQKMSPTTV------------TDPMQQKIMTFMPVI 501 Query: 242 MLWFMPATILFTGFIW-TIGLLVYMMSNNVWTFFQQRYIFAKMDAEEAAEEEEKRA 296 F F+W GL++Y + +N+ T QQ+ I+ ++ E+K++ Sbjct: 502 FTVF---------FLWFPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS 548
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 30.8 bits (69), Expect = 0.012 Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 8/86 (9%) Query: 54 TAAAPKRESTPAAPAPEAPAQAAPQHTEATKP-----EVVPEPAAPAPTQSAQQEAPQAQ 108 T E A Q P+ T P E V A PA + Q Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQ 1159 Query: 109 PAQQSEFGASYLEIPIEQIRPNPQQP 134 + + E P ++ N +QP Sbjct: 1160 SQTNTT---ADTEQPAKETSSNVEQP 1182
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 28.0 bits (62), Expect = 0.022 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 32 EVAAKADPVFEKEAWLSTTLL-------EYESCGFNIGYRNGTPALASVIFCERDAAPGA 84 V + P FE W T +YE ++ Y A + + E + G Sbjct: 21 VVFGRMIPAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLE-NNCIGR 79 Query: 85 KALPTAPVSSDAAIISSLFIDEVFRGTGMESALLDAS 121 + + + A+I + + + +R G+ +ALL + Sbjct: 80 IKIRSN--WNGYALIEDIAVAKDYRKKGVGTALLHKA 114
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 33.6 bits (77), Expect = 0.002 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 19/147 (12%) Query: 346 VAVIGGLIALRNMDRLDRRT--------TFIIGL--SLTTTFHLLIAAAGTLLPEGNSIR 395 VI L AL+ + T + + A G I Sbjct: 93 TVVIPRLEALKKEGQAGTAKITQYTRYLTVALAILQGTGLVATARSAPLFGRCSVGGQIV 152 Query: 396 PFAIMILVVGFVLSMQTFLNVAVWVWLAEIFPVRMKGIGTGISVFCGWGI-----NGVLA 450 P + + V+ M V +WL E+ + +GIG G+S+ I + + A Sbjct: 153 PDQSIFTTITMVICM--TAGTCVVMWLGEL--ITDRGIGNGMSILMFISIAATFPSALWA 208 Query: 451 LFFPALVSGVGITFSFLIFAVVGVIAL 477 + ++G I F +I + ++AL Sbjct: 209 IKKQGTLAGGWIEFGTVIAVGLIMVAL 235
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.5 bits (154), Expect = 7e-15 Identities = 31/83 (37%), Positives = 44/83 (53%) Query: 7 KAAETRQRFIDVAHELFLEHGYGSTSMNQIAQAAGGSRANLYLHFRNKPDLMMAKMRELE 66 +A ETRQ +DVA LF + G STS+ +IA+AAG +R +Y HF++K DL E Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 67 PAVRTPVLKVFDLPEHTLESILR 89 + L+ S+LR Sbjct: 68 SNIGELELEYQAKFPGDPLSVLR 90
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.003 Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 10/147 (6%) Query: 89 GFVYMTSLVASFIADRV---LGSERTLFYSAIIVMLGHIALALIPGYTGLSIGLVLIGLG 145 F + SL + I V LG R L I G+I LA G +++ L Sbjct: 254 AFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT--RGWMAFPIMVLLA 311 Query: 146 SGGVKTAAQVVLGQLYSRTDTRRDAGF--SIFYMGVNLGGLFGPLITNALWGWGGFHWGF 203 SGG+ A L + SR G +L + GPL+ A++ W Sbjct: 312 SGGIGMPA---LQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNG 368 Query: 204 GIAAVGMALGLIQYVAMRKTTIGAAGH 230 G AL L+ A+R+ AG Sbjct: 369 WAWIAGAALYLLCLPALRRGLWSGAGQ 395
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 63.1 bits (153), Expect = 6e-14 Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 26/228 (11%) Query: 2 KSIFISGAANGIGKAVALKFLHEGWLVGAYDLA----EITYSHPNLRWGY-----LNVRQ 52 K FI+GAA GIG+AVA +G + A D E S + +VR Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 53 SESWDKALEDFATHTGGTIDVVDNNAGVIIEGPLQDAEEGSVDKLLAINVNGVTLGARAA 112 S + D+ G ID++ N AGV+ G + + + ++N GV +R+ Sbjct: 69 SAAIDEITARIEREMGP-IDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 113 HPYLARTPGAQLLNMSSASAVYGQPQIAVYSASKFYVAGLTEALNLEWRKDDIRVVDV-- 170 Y+ ++ + S A + +A Y++SK T+ L LE + +IR V Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSP 187 Query: 171 --------WPLWAKTDLVNGVKAKSLK--RLGVRIT----PEQVAQAV 204 W LWA + V SL+ + G+ + P +A AV Sbjct: 188 GSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAV 235
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 36.3 bits (84), Expect = 6e-05 Identities = 36/172 (20%), Positives = 54/172 (31%), Gaps = 37/172 (21%) Query: 1 MKVFIIGAAGGIGNRLSSLLHARGDAVSGM------------HRNLEQASKITDTGATAV 48 MK + GAAG IG +S L G V G+ LE ++ G Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQ---PGFQFH 57 Query: 49 LGDLIHNSTEELAELFRGH--DAIVFSAGAHGT--GQENT-TLIDG--AGLRKAADAASA 101 DL E + +LF + + S EN D G + Sbjct: 58 KIDL--ADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH 115 Query: 102 ANVSRFILVSAFPESSRGENTTENFEH----------YMKVKKSADVYLSHT 143 + + S+ S G N F Y KK+ ++ ++HT Sbjct: 116 NKIQHLLYASS--SSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL-MAHT 164
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 64.3 bits (156), Expect = 7e-15 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 8/146 (5%) Query: 15 ANRRRNRPSP-RQRLLDSATNLFTTEGIRVIGIDRILREADVAKASLYSLFGSKDALVIA 73 A + + RQ +LD A LF+ +G+ + I + A V + ++Y F K L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 74 YLENLDQLWREAWRERTVGM-----KDPEDKIIAFFDQCIEEEPEKDFRGSHFQNAASEY 128 E + E E + +I + + EE + F Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 129 PRPETDSEKGIVAAVLEHREWCHKTL 154 ++ LE + +TL Sbjct: 122 EMAV--VQQAQRNLCLESYDRIEQTL 145
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 94.2 bits (234), Expect = 6e-23 Identities = 59/274 (21%), Positives = 104/274 (37%), Gaps = 71/274 (25%) Query: 4 ILIYPVSGVMKLWHLLLHNVAGLDDSLAWFFSLFGLVITIRAIIAPFTWQMYKSGRTAAH 63 + P+ ++K H + N W FS+ + +R I+ P T Y S Sbjct: 335 FISQPLFKLLKWIHSFVGN---------WGFSIIIITFIVRGIMYPLTKAQYTSMAKMRM 385 Query: 64 IRPHRAALREEYKGKYDEASIRELQKRQNDLNKEYGINPLAGCVPGLIQIPIVLGLYWAL 123 ++P A+RE + + + L K +NPL GC P LIQ+PI L LY+ L Sbjct: 386 LQPKIQAMRERLGDDK-----QRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYML 440 Query: 124 LRMARPEGGLENPVFQSIGFLTPEEVESFLAGRVSNVPLPAYVSMPTEQLKYLSTTQAEV 183 + S P ++ + Q Y Sbjct: 441 M-------------------------GSVEL---RQAPFALWIHDLSAQDPY-------- 464 Query: 184 LSFVLPLFITAAILTAINMAMSMYRSFQTNDYASGFSNGML-KFMIVMSILAPIFPLSLG 242 ++LP+ M ++M+ F + ++ M K M M ++ +F L Sbjct: 465 --YILPIL----------MGVTMF--FIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW-- 508 Query: 243 LTGPFPTAIALYWVSNNLWTLLQTIIMMVILERK 276 FP+ + LY++ +NL T++Q ++ LE++ Sbjct: 509 ----FPSGLVLYYIVSNLVTIIQQQLIYRGLEKR 538
>PF06580#Sensor histidine kinase Length = 349 Score = 41.0 bits (96), Expect = 7e-06 Identities = 55/359 (15%), Positives = 126/359 (35%), Gaps = 56/359 (15%) Query: 66 LLFVWGFLYFYGSTKRVDLSHGMQ---LGWLFVLTL---------VWIFMVPIVPVSIYL 113 L +GF YGS K + + +G + + + M I+ + Sbjct: 24 TLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPA 83 Query: 114 LFPLFFLYLQVMPDVRGIIAILGATAIAIASQYSVGLTFGGVMGPVVSAIVTVAIDYAFR 173 + ++ + ++A + +A ++ + F V+ + +++ + Sbjct: 84 CVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFF-- 141 Query: 174 TLWRVNNEKQELIDQLIETRSQLAVTERNAGIAAERQRI-AHEIHDTVAQGLSSIQMLLH 232 N KQ IDQ ++A + A + A + +I H + + L++I+ L Sbjct: 142 -----KNYKQAEIDQW-----KMASMAQEAQLMALKAQINPHFMFNA----LNNIRAL-- 185 Query: 233 VSEQEILVAEMEEKPKEAIVKKMRLARQTASDNLSEARAMIAAL-QPAALSKTSLEAALH 291 + E K +E + L R +L + A +L + + L+ A Sbjct: 186 -------ILEDPTKAREMLTSLSELMRY----SLRYSNARQVSLADELTVVDSYLQLASI 234 Query: 292 RVTEPLLGINFVISVDGDVRQLPMKTEATLLRIAQGAIGNVAKHSEAKNC-HVTLTYEDT 350 + + L F ++ + + + + + + I + + T ++ Sbjct: 235 QFEDRL---QFENQINPAIMDVQVPP-MLVQTLVENGIKHGIAQLPQGGKILLKGTKDNG 290 Query: 351 EVRLDVVDDGVGFEPSEVSSTPAGLGHIGLTALQQRAMELHGE---VIVESAYGQGTAV 406 V L+V + G + ST GL +++R L+G + + G+ A+ Sbjct: 291 TVTLEVENTGSLALKNTKEST-----GTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 53.3 bits (128), Expect = 1e-10 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 10/125 (8%) Query: 2 IRVLLADDHEIVRLGLRAVLESAEDIEVVGEVSTAEGAVQAAQEGGIDVILMDLRFGPGV 61 +L+ADD +R L L +V S A + G D+++ D+ Sbjct: 4 ATILVADDDAAIRTVLNQALSR-AGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE- 60 Query: 62 QGTQVSTGADATAAIKRNIDNPPKVLVVTNYDTDTDILGAIEAGALGYLLKDAPPSELLA 121 D IK+ + P VLV++ +T + A E GA YL K +EL+ Sbjct: 61 ------NAFDLLPRIKKARPDLP-VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113 Query: 122 AVRSA 126 + A Sbjct: 114 IIGRA 118
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 85.3 bits (211), Expect = 6e-20 Identities = 77/362 (21%), Positives = 152/362 (41%), Gaps = 26/362 (7%) Query: 47 FNTTAANASWIITVTLLVGAVATPVMGRLADMYGKKKMMLISLVPFILGSVICAVSVDLI 106 FN A+ +W+ T +L ++ T V G+L+D G K+++L ++ GSVI V Sbjct: 44 FNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFF 103 Query: 107 PMII-GRGFQGLGSGLIP-LGISLMHDLLPREKAGSAIALMSSSMGIGGALGLPLAAAIA 164 ++I R QG G+ P L + ++ +P+E G A L+ S + +G +G + IA Sbjct: 104 SLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIA 163 Query: 165 QFASWRVLFWFTALVALTVGAVIWKAIPARPRIVRSGGFDYFGALGLAMGLIALLLAVSK 224 + W L + +TV ++ K + R G FD G + +++G++ +L + Sbjct: 164 HYIHWSYLLLIPMITIITVPFLM-KLLKKEVR--IKGHFDIKGIILMSVGIVFFMLFTTS 220 Query: 225 GSEWGWRSALTIGLFVAALVILVGWGWFETRQKSPLIDLRTTIRATVLMTNIASILIGFT 284 S + + + I + P +D ++ + +I T Sbjct: 221 YS-ISFLIVSVLSFLIFVKHIR--------KVTDPFVDPGLGKNIPFMIGVLCGGIIFGT 271 Query: 285 MYGMNLILPQVMQLPVILGYGLGQSMLQMGIWLIPMGLGMMLISNAGAAISAAHGPRVTL 344 + G ++P +M+ + L + + I + P + +++ G + GP L Sbjct: 272 VAGFVSMVPYMMK----DVHQLSTAEIGSVI-IFPGTMSVIIFGYIGGILVDRRGPLYVL 326 Query: 345 TIAGVVIAVGYALTATVLFT-------IGNRTPGGDADNALILTTLVLFSVCSLVVGIGI 397 I ++V + + +L T I GG + +++T+V S+ G G+ Sbjct: 327 NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGM 386 Query: 398 GL 399 L Sbjct: 387 SL 388
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.9 bits (101), Expect = 2e-06 Identities = 59/362 (16%), Positives = 122/362 (33%), Gaps = 50/362 (13%) Query: 57 LPTMTEELGITPTESALTVSATTGMLALCIVPASILSEKFGRGRVLTISLTLAIIVGLIL 116 LP + + P + +A ++ LS++ G R+L + + +I Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 117 PLVPN-ITALILLRGLQGALLAGTPAVAMTWLSEEIHPKDIGHAMGIYIAGNTVGGLTGR 175 + + + LI+ R +QGA A PA+ M ++ I ++ G A G+ + +G G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 176 MIPAGLLEVTHWQNALLGSSIAALIFGVIMVVLLPKQRKFQPKNINLRH----------- 224 I + HW LL I I V ++ L K+ + +++ Sbjct: 157 AIGGMIAHYIHWSYLLLIPMI--TIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFF 214 Query: 225 ------------------------EISAMAAHWRNPRL----ALLFGT--AFLGMGTFVS 254 I + + +P L + G + GT Sbjct: 215 MLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAG 274 Query: 255 LYNYLGFRMIDQFGLSEVLVGAVFIM--YLAGTWSSTQAGALREKIGNGSTVIFLSLTMI 312 + + + M D LS +G+V I ++ G L ++ G + + Sbjct: 275 FVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLS 334 Query: 313 ASMALMGI----NNLWVTLVALFVFTAAFFALHSSASGWIGIIATKDRAEASSMYLFCYY 368 S + ++T++ +FV F ++ + ++ S+ F + Sbjct: 335 VSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSF 394 Query: 369 VG 370 + Sbjct: 395 LS 396 Score = 32.5 bits (74), Expect = 0.003 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 89 ASILSEKFGRGRVLTISLTLAIIVGLILPLVPNITALILLRGLQGAL--LAGTPAVAMTW 146 IL ++ G VL I +T + L + T+ + + L L+ T V T Sbjct: 313 GGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVISTI 372 Query: 147 LSEEIHPKDIGHAMGIYIAGNTVGGLTGRMIPAGLLEV 184 +S + ++ G M + + + TG I GLL + Sbjct: 373 VSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.029 Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 181 VLWLQGPNGSGKSTLLRGLA 200 + L+G G GKSTL+ L Sbjct: 598 SVVLEGTGGIGKSTLINTLV 617
>PF05844#YopD protein Length = 295 Score = 33.1 bits (75), Expect = 0.002 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Query: 91 AVPAPGISIPAAPSAPGSAIPTPGTAIPVPGSATPVPAPGVSAPGASVPSIPVPGSVTPP 150 ++ A +IP+ P APG+A G ++ P +A +P V A A + P V P Sbjct: 7 SLAATQAAIPSEPIAPGAA----GRSVGTPQAAAELPQ--VPAARADRVELNAPRQVLDP 60 Query: 151 APGISAPGGAL 161 + A G L Sbjct: 61 V-RMEAAGSEL 70
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 37.5 bits (87), Expect = 8e-05 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 15/143 (10%) Query: 255 GFTISLHVAGMYALSPVFGLLTDKLGRNVTIYSGFAMLATSAAFLIIWPEPQWAMITSMI 314 G ++L+ +A +PV G L+D+ GR + A A A + P W + I Sbjct: 46 GILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-LWVLYIGRI 104 Query: 315 LLGL-GWNSALVGSSTLLVDATPIHHRTYAQGRSDLTMNLAGASGGLIAGPLIA--MGG- 370 + G+ G A+ G+ + D T R G A G++AGP++ MGG Sbjct: 105 VAGITGATGAVAGA--YIADITDGDERARHFGFMS-----ACFGFGMVAGPVLGGLMGGF 157 Query: 371 ---MPLLAGVVLAVVALQTVLSF 390 P A L + T Sbjct: 158 SPHAPFFAAAALNGLNFLTGCFL 180 Score = 32.9 bits (75), Expect = 0.002 Identities = 58/337 (17%), Positives = 93/337 (27%), Gaps = 27/337 (8%) Query: 63 IFSIPLARMVSTYDRRTSLSTGMLLGCVGALLAILGAQFGLFPVVLLAFLFLGSMSAVNL 122 + L + + RR L + V + V+ + + G A Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATA---PFLWVLYIGRIVAGITGATGA 114 Query: 123 QARFAATDVASEETRGRDLSIVVWSTTIGAIAGPNLFEPSARFSETLGLEQHAGAYLLCL 182 A D+ + R R + G +AGP L FS HA + Sbjct: 115 VAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFS------PHAPFFAAAA 168 Query: 183 FGQLIAIAVWRFTLPKGLKPEATPNAPTEKKRLT---------PKALQAITSVATAHFSM 233 L + F LP+ K E P L A Sbjct: 169 LNGLNFLTGC-FLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQ 227 Query: 234 VGLMSMAAIHMQGHGASLTIIGFTIS-LHVAGMYALSPVFGLLTDKLGRNVTIYSGFAML 292 V T IG +++ + A + + G + +LG + G Sbjct: 228 VPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIAD 287 Query: 293 ATSAAFLIIWPEPQWAMITSMILLGLGWNSALVGSSTLLVDATPIHHRTYAQGRSDLTMN 352 T L + W M+LL G + +L + QG + Sbjct: 288 GTGYILL-AFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTS 345 Query: 353 LAGASGGLIAGPLIAM-----GGMPLLAGVVLAVVAL 384 L G L+ + A G +AG L ++ L Sbjct: 346 LTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCL 382
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.018 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Query: 25 PAFRVLRE--KRMLDFRAPITVITGENGVGKSTLLEAI 60 A + + R++ + +ITGE+G GK + A+ Sbjct: 144 AAMQEIYRVLARLMQTDLTL-MITGESGTGKELVARAL 180
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 29.0 bits (65), Expect = 0.008 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 13/93 (13%) Query: 4 NLFLLLAAGTLISAGVYLLLDRAMTKMIMGLML----IGNGANLLILVAGGSAGSPPILG 59 ++F + ++AG ++ M +G ++ IGNG ++L+ +A P L Sbjct: 156 SIFTTITMVICMTAGTCVV-------MWLGELITDRGIGNGMSILMF-ISIAATFPSALW 207 Query: 60 RESEIYGDKTADPLAQAMILTAIVISMALTAFM 92 + G + ++ +I +AL F+ Sbjct: 208 AIKK-QGTLAGGWIEFGTVIAVGLIMVALVVFV 239
>PF07201#Hypersensitivity response secretion protein HrpJ Length = 293 Score = 31.7 bits (72), Expect = 0.004 Identities = 8/44 (18%), Positives = 17/44 (38%) Query: 217 LEGAVHSGQYGGAAPDAVAALVRVLDTLRDEHGRTVIDGVNTTA 260 L G + + + + L ++ +E G T++ G T Sbjct: 139 LCGLRDALKGRPELAHLSHLVEQALVSMAEEQGETIVLGARITP 182
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 3e-04 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 10 GGTFGSSSG-GFSGGQSGFGGGSQNSGFGGSSGGFSGGSSNGSFGGSTGGFTPAGATSNP 68 G G+S G G+S + +GGGS + G G G NG+ GG +G A + P Sbjct: 28 GVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAP 87 Query: 69 SGFSTPKVAESPAPG 83 F P ++ A G Sbjct: 88 VAFGFPALSTPGAGG 102 Score = 31.2 bits (70), Expect = 0.003 Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 2/94 (2%) Query: 16 SSGGFSGGQSGFGGGSQNSGFGGSSGGFSGGSSNGSFGGSTGGFTPAGATSNPSGFSTPK 75 S G G +G S N G + G GG+S+GS S G+ S Sbjct: 2 SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61 Query: 76 VAESPAPGRSSGRKRAGGRLQS--APTEWILPGL 107 G S G GG L + AP + P L Sbjct: 62 HGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPAL 95 Score = 30.8 bits (69), Expect = 0.003 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 8 PPGGTFGSSSGGFSGGQSGFGGGSQNSGFG-GSSGGFSGGSSNGSFG 53 P GG GS G G GGG+ NSG G G+ G S ++ +FG Sbjct: 45 PWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFG 91
>cloacin#Cloacin signature. Length = 551 Score = 30.8 bits (69), Expect = 0.027 Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 856 GTGSGGGFGSSNGGGFGSGSGSNDTNGGFGSSGGFGA 892 G GSG G G G G+G G+ ++ GG G+ G A Sbjct: 47 GGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 46.1 bits (109), Expect = 2e-07 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 4/112 (3%) Query: 124 EVIDEPEYEPELESEPVHAVPGPAQVPEQVFEQVVAPEPVLDPEPELVPEQEFTPEFTPE 183 +VI+ P + V Q + V P++ P+ Sbjct: 34 QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 93 Query: 184 PEPAPEPVAEPEPMAEPAPELVRKPAHQAEP----SVAEIPETPEPDPTPAP 231 P+P P+P + +P ++ + A P + A + + T P Sbjct: 94 PKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 145 Score = 41.1 bits (96), Expect = 9e-06 Identities = 22/86 (25%), Positives = 28/86 (32%), Gaps = 5/86 (5%) Query: 162 PVLDPEPELVPEQEFTPEFTPEPEPAPEPVAEPE-PMAEPAPELVRKPAHQAEPSVAEIP 220 P P+ V PEPEP P P E P+ P+ KP + V Sbjct: 52 PADLEPPQAVQPPPEPVV-EPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV---Q 107 Query: 221 ETPEPDPTPAPRRRRQNTGSHRSASA 246 E P+ D P R + A Sbjct: 108 EQPKRDVKPVESRPASPFENTAPARL 133 Score = 39.6 bits (92), Expect = 3e-05 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 1/102 (0%) Query: 127 DEPEYEPELESEPVHAVPGPAQVPE-QVFEQVVAPEPVLDPEPELVPEQEFTPEFTPEPE 185 D + P P P + ++ P+P+ P+ + P+ + Sbjct: 54 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 113 Query: 186 PAPEPVAEPEPMAEPAPELVRKPAHQAEPSVAEIPETPEPDP 227 P P AP + A S P Sbjct: 114 VKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 155 Score = 31.9 bits (72), Expect = 0.007 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 3/99 (3%) Query: 154 FEQVVA-PEPVLDPEPELVPEQEFTPEFTPEPEPAPEPVAEPEPMAEPAPELVRKPAHQA 212 QV+ P P +V + P +P P P EPEP P P P Sbjct: 32 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP-KEAPVVIE 90 Query: 213 EPSVA-EIPETPEPDPTPAPRRRRQNTGSHRSASAEAQS 250 +P + P P+R + S ++ E + Sbjct: 91 KPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTA 129
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 28.4 bits (63), Expect = 0.041 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 241 GMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTASSQIA 280 G +I F +V +L+L RNPDF+ + ++A Sbjct: 171 ARVPNGAIIERELPSKFKDSVNLVLQL-RNPDFSTAVRVA 209
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.6 bits (82), Expect = 3e-04 Identities = 75/380 (19%), Positives = 128/380 (33%), Gaps = 44/380 (11%) Query: 57 NATSLYSMAVAIAGVIVAVVAPVMGRRSDIKGTRRRSLRMWTLVTVFLMFCLFTVKNTDP 116 + T+ Y + +A+ ++ APV+G SD G RR + + +L + + + Sbjct: 40 DVTAHYGILLALYALMQFACAPVLGALSDRFG--RRPVLLVSLAGAAVDYAIMATAPFLW 97 Query: 117 TFFWFGVAIMAIANITFEFAEVQYYAQLSQISTRENVGRVSGFGWSMGYFGGIVLLLVCY 176 + G + I T A Y A ++ R FG+ FG Sbjct: 98 VLY-IGRIVAGITGATGAVA-GAYIADITDGDER-----ARHFGFMSACFG--------- 141 Query: 177 LGFVAGDGDTRGFLNLPIEDGMNIRLVAVLAAVWFLVSAIPALLRVPEIEAQVAAEDHPK 236 G VAG G + G + AA ++ + +PE E P Sbjct: 142 FGMVAGPV-LGGLMG-----GFSPHAPFFAAAALNGLNFLTGCFLLPE---SHKGERRPL 192 Query: 237 GLIAAYKDLFGQIAELWKQDRNSVYFLIAAAVFRDGLAGVF-TFGAILAVSVYGLSAGDV 295 A + W + V L+A + V I + A + Sbjct: 193 RREA--LNPLASFR--WARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI 248 Query: 296 LLFGVAANVVSALGALLGGFLDDRV----GPKPIILISLAIMIADAAILFFVEGPTNFWI 351 G++ L +L + V G + +++ MIAD + T W+ Sbjct: 249 ---GISLAAFGILHSLAQAMITGPVAARLGERRALMLG---MIADGTGYILLAFATRGWM 302 Query: 352 F--GLILCAFVGPAQSASRSYLTRLSPDGQEGQLFGLYATTGRAVSWMVPSLFGVFVGLT 409 ++L A G A ++ L+R + ++GQL G A S + P LF + Sbjct: 303 AFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAAS 362 Query: 410 GDDRTGILAIALILLFGIVL 429 G IA L+ + L Sbjct: 363 ITTWNGWAWIAGAALYLLCL 382
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 50.0 bits (119), Expect = 5e-10 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 2 RTSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLAD 61 ++ IL A+ + + + S +A+A G+++ + +HF + L + EL Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 62 DWDKELRDIT-RDPEDPLERLRAVVV-TLAENVSRPELLLLIDAPSHPDFLNAWRTVNHQ 119 + + + + P DPL LR +++ L V+ LL++ H V Q Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 120 WI 121 Sbjct: 129 AQ 130
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 152 bits (386), Expect = 3e-43 Identities = 82/398 (20%), Positives = 159/398 (39%), Gaps = 16/398 (4%) Query: 28 FLIGVDNSILYTALPLLREQLAATETQALWIINAYPLLMAGLLLGTGTLGDKIGHRRMFL 87 F ++ +L +LP + W+ A+ L + G L D++G +R+ L Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 88 MGLSIFGIASLGAAFAPTAWA-LVAARAFLGIGAATMMPATLALIRITFEDERERNTAIG 146 G+ I S+ + ++ L+ AR G GAA PA + ++ + + R A G Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAA-AFPALVMVVVARYIPKENRGKAFG 142 Query: 147 IWGSVAILGAAAGPIIGGALLEFFWWGSVFLINVPVAVIALIATLFVAPANIANPSKHWD 206 + GS+ +G GP IGG + + W +L+ +P+ I + L H+D Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLLKKEVRIKGHFD 200 Query: 207 FLSSFYALLTLAGLIITIKESVNTARHMPLLLGAVIMLIIGAVLFSSRQKKIEEPLLDLS 266 ++ ++ I+ + + +I+ ++ ++F +K+ +P +D Sbjct: 201 IK----GIILMSVGIVFFMLFTTSY-----SISFLIVSVLSFLIFVKHIRKVTDPFVDPG 251 Query: 267 LFRNRLFLGGVVAAGMAMFTVSGLEMTTSQRFQLSVGFTPLEAG-LLMIPAALGSFPMSI 325 L +N F+ GV+ G+ TV+G + + E G +++ P + Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 326 IGGANLHRWGFKPLISGGFAATAVGIALCIWGATHTDGLPFFIAGLFFMGAGAGSVMSVS 385 IGG + R G +++ G +V F + F+ G +V Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVS--FLTASFLLETTSWFMTIIIVFVLGGLSFTKTVI 369 Query: 386 STAIIGSAPVRKAGMASSIEEVSYEFGTLLSVAILGSL 423 ST + S ++AG S+ + +AI+G L Sbjct: 370 STIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 100 bits (251), Expect = 1e-26 Identities = 34/118 (28%), Positives = 56/118 (47%) Query: 9 IRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGF 68 +LV DD+ I +L +L G+ V ++ + D + DV+MP + F Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 69 ELLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 +LL +++ D PVL ++A++ I GA DY+ KPF L E+I + L Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>PF06580#Sensor histidine kinase Length = 349 Score = 38.3 bits (89), Expect = 6e-05 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 26/106 (24%) Query: 385 LVANGLNHG----GPDAEVSIEINTDGQNVRILVADNGVGMSEEDAQHIFERFYRADSSR 440 LV NG+ HG ++ ++ D V + V + G + + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKE------------- 309 Query: 441 SRASGGSGLGLAITK---SLVEGHGGTVTVDSVQGEGTVFTITLPA 483 +G GL + ++ G + + QG+ + +P Sbjct: 310 -----STGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNA-MVLIPG 349
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.1 bits (62), Expect = 0.041 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 41 GPNGAGKTTMLKIAATLLYPSEGTVDILGHR 71 G G GK+T++ L + S+ DI + Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 60.3 bits (146), Expect = 3e-13 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 27/221 (12%) Query: 31 LSVESIVERTLNIAGREGFAAVTMNRLARDMGVTPRALYNHVLNRQEIIDRVWVRIID-- 88 L+ ES+++ L + G +T +LA+ +G+ LY HV N++ ++D + V I+ Sbjct: 4 LNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARH 63 Query: 89 -DIKVPDLDPDNWRQSIHTLWSSLRDQFRETPRVLLVALDEQISTQGTSPL--RIAGAEE 145 D +P ++W+ + S R R LL D GT P + E Sbjct: 64 HDYSLP-AAGESWQSFLRNNAMSFR-------RALLRYRDGAKVHLGTRPDEKQYDTVET 115 Query: 146 SLKFLTDIGLSLKEATIIREMMMADVFSFTLTSDYTFDNRPEGEKPDVFAPVPKPWLDEN 205 L+F+T+ G SL++ +++ + S +T E ++ DEN Sbjct: 116 QLRFMTENGFSLRDG----------LYAISAVSHFTLGAVLEQQEHTAALTDRPAAPDEN 165 Query: 206 PDVEAPLTRKAVEESVST-SDELFGYMVEARIAYIEKLLAA 245 PL R+A++ S ++ F + +E+ I E L A Sbjct: 166 L---PPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQLTA 203
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 78.9 bits (194), Expect = 8e-20 Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 23/248 (9%) Query: 1 MKKKIAVVTGATGGMGIEIVKDL-SRDHIVYALGRNPEHLAALAEIEGVEPIESDIVK-E 58 ++ KIA +TGA G+G + + L S+ + A+ NPE L + E ++ + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 59 VLEEGGVDK-----LKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSR 113 V + +D+ + + +D LV+ A V R I + S EW A +N SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 114 QLLPALRAA-SGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTV 172 + + SG ++ + S P YA+SK A E A IR + V Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 173 SPGPTNTPMLQGLMDSQ----------GTNFRPEIYI----EPKEIANAIRFVIDAGETT 218 SPG T T M L + F+ I + +P +IA+A+ F++ +G+ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV-SGQAG 244 Query: 219 QITNVDVR 226 IT ++ Sbjct: 245 HITMHNLC 252
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.1 bits (67), Expect = 0.026 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Query: 104 IPKPN--PGSGNGGNGG-----NPDGGPDGGDSGDDDSGDD-DPDPEPDKPEDGKPDGDK 155 IP+P+ PGS N +P P + +++ G +P+P+PD D PD D Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSPAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDG 369 Query: 156 PRGPR 160 G R Sbjct: 370 QPGTR 374
>BCTERIALGSPC#Bacterial general secretion pathway protein C signature. Length = 272 Score = 30.3 bits (68), Expect = 0.013 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 164 AGIEHGDKILAVNGQEMASFTAIRDAILELPGETA-TLTIEREGTLFDVDLQ 214 G++ D +A+NG ++ + A+ + TLT+ER+G D+ ++ Sbjct: 216 VGLQDNDMAVALNGLDLRDAEQAKKAMERMADVHNFTLTVERDGQRQDIYME 267
>TETREPRESSOR#Tetracycline repressor protein signature. Length = 218 Score = 27.2 bits (60), Expect = 0.049 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query: 125 DKALSLLNSIGLGDLAKRKVSELSGGQQA----RVNLARALMNS 164 D AL LLN G+ L RK+++ G +Q V RAL+++ Sbjct: 11 DAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDA 54
>PF06580#Sensor histidine kinase Length = 349 Score = 40.2 bits (94), Expect = 9e-06 Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 49/351 (13%) Query: 37 WGVWVLAFGYGVVYVAGVVPNSPFKNHPMAWFLVLSLLWASLIWD-GPEPAYLVFPMFFL 95 WGV+ L G+G + G K H M + + +SL+ L + + Sbjct: 20 WGVYTL-TGFGFASLYG-----SPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNM 73 Query: 96 AVLITTPLKSAIIIAILTAIAVVTLAMHLGF----SVGVVTGPILGALVAWVMGT-CFQL 150 +I L + ++I ++ +A ++ L F V L + V+ T + L Sbjct: 74 GQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSL 133 Query: 151 LAQALKELVDARASAIRASK--SAGEQAERARIAGEIH-----DTVAQGLSSIQMLLHAA 203 L + + + I K S ++A+ + +I+ + L++I+ L+ Sbjct: 134 LYFGWHFFKNYKQAEIDQWKMASMAQEAQLMALKAQINPHFMFNA----LNNIRALILED 189 Query: 204 EKRVDDP-QALSHIRLARQTTADNLAETRQIIAALQPTPLIGADLPVALARLSSTTPMGQ 262 + + +LS L R + + A + L ++ + L +A + Sbjct: 190 PTKAREMLTSLS--ELMRYSLRYSNARQVSLADELT---VVDSYLQLASIQ------FED 238 Query: 263 NITFEVDGSPRVLPDAMEAEIVR-IAQTLLGNVVRHAQADSAK-----MTLTYQDDQILL 316 + FE + P M+ ++ + QTL+ N ++H A + + T + + L Sbjct: 239 RLQFENQ----INPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 317 DVIDNGQGFDVAEVIRKKSIGLPTAQRRAEGLGG---TIIIESTIGSGTGI 364 +V + G + GL + R + L G I + G + Sbjct: 295 EVENTGSLA-LKNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 62.9 bits (153), Expect = 8e-14 Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 8/123 (6%) Query: 2 IRILLADDHPVVRAGLASLLVSEDDFEIVDMVGTPDDAVARAAEGGVDVVLMDLRFGDQP 61 IL+ADD +R L L V + A G D+V+ D+ D Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPD-- 59 Query: 62 GIEVAGGVEATRRIRALDNPPQVLVVTNYSTDGDVVGAVSAGAVGYLLKDSSPEDLIAGV 121 + RI+ VLV++ +T + A GA YL K +LI + Sbjct: 60 ----ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115 Query: 122 RDA 124 A Sbjct: 116 GRA 118
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 28.8 bits (64), Expect = 0.009 Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 96 APDQVNEFVAEAESQPVEESVVEAKVPKQQVAPQPAQKPEQKPEQKSAQPAQSEPDDG 153 A E V E E +P + P P+P KP+ KP +K + + + Sbjct: 60 AVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117 Score = 28.0 bits (62), Expect = 0.017 Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 83 APQQIAPPSTTTRAPDQVNEFVAEAESQPVEESVVEAKVPKQQVAPQPAQKPEQKPEQKS 142 P + PP P+ V E E E P + K + P+P KP +K +++ Sbjct: 51 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 110 Query: 143 A 143 Sbjct: 111 K 111
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 177 bits (451), Expect = 3e-60 Identities = 46/151 (30%), Positives = 83/151 (54%), Gaps = 6/151 (3%) Query: 1 MTRTARQALILQILDKQKVTSQVQLSELLLDEGIDITQATLSRDLDELGARKVRPDGGRA 60 M + R I +I+ ++ +Q +L ++L +G ++TQAT+SRD+ EL KV + G Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGSY 60 Query: 61 YYAVGPVDSIAREDLRGPSEKLRRMLDELLVSTDHSGNIAMLRTPPGAAQYLASFIDRVG 120 Y S+ + P KL+R L + V D + ++ +L+T PG AQ + + +D + Sbjct: 61 KY------SLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLD 114 Query: 121 LKEVVGTIAGDDTVFVLARDPLTGKELGELL 151 +E++GTI GDDT+ ++ R K + + + Sbjct: 115 WEEIMGTICGDDTILIICRTHDDTKVVQKKI 145
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 37.9 bits (88), Expect = 3e-05 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 10/61 (16%) Query: 30 KIVVVKYGGNAMVDDDLKAAFAADMVFLRTV----------GAKPVVVHGGGPQISEMLN 79 K VV+ GGNA+ K ++ M +R G + V+ HG GPQ+ +L Sbjct: 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLL 62 Query: 80 R 80 Sbjct: 63 H 63
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 29.3 bits (65), Expect = 0.005 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%) Query: 27 EDTTEETSTTSSSTTSSSSSSSSSSTAATSEESSAVEEPAVEAPVEEAPVEAPVEQAPVV 86 T E+ ++ TT+ + + + + + E + +E E A V Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 87 EQAPVEQAPAPVQEAPAPVEQAPAPVQEAPAADAPPALP 125 ++ + QE P Q P QE P A P Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVS-PKQEQSETVQPQAEP 1145
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 30.2 bits (68), Expect = 0.015 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 16/117 (13%) Query: 89 YYCKRRITKIYPMHLIALAMFIVASAKFTTTGITWVLDFARVELWLPNALLI----HTWN 144 C+ I+ YP L+ L +++ A T W A + W+ AL Sbjct: 100 RGCQAPISARYP--LVELLTALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLL 157 Query: 145 PDWVTLGGLNVPSWSLGAEMLFYLTFPLFIPLVRKVKG--VGNWWAFGITFAVSLAL 199 PD +TL L W G L + F+ L V G G + + +A L Sbjct: 158 PDQLTLPLL----W-GG---LLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLT 206
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.3 bits (63), Expect = 0.029 Identities = 7/29 (24%), Positives = 17/29 (58%) Query: 46 LFSNGAVWMWMIAIVMVFLALLSFIMIPV 74 F ++ W++AI+++ L+ + +PV Sbjct: 4 FFIRRPIFAWVLAIILMMAGALAILQLPV 32
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 30.0 bits (67), Expect = 0.040 Identities = 7/39 (17%), Positives = 16/39 (41%) Query: 449 STKKVDTIVLDKTGTVTTGTMSVTDVTAINYSETEILEF 487 + LD+ G ++ + +V AI+ + + F Sbjct: 158 QPASTVKVTLDQDGVAKLSSVQIKNVYAIDTTYNSNVNF 196
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 149 bits (378), Expect = 1e-41 Identities = 102/407 (25%), Positives = 184/407 (45%), Gaps = 17/407 (4%) Query: 46 VLSALMVAMMMASLDQMIFGTALPTIVGELGGV-DHMMWVITAYLLAETIMLPIYGKLGD 104 +L L + + L++M+ +LP I + WV TA++L +I +YGKL D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 105 LVGRKGLFIGALGIFLIGSVIGGLAGNM-TWLIVGRAVQGIGGGGLMILSQAIIADVVPA 163 +G K L + + I GSVIG + + + LI+ R +QG G L ++A +P Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 164 RERGRYMGVMGGVFGLSAVLGPLLGGWFTEGPGWRWAFWMNIPLGIIAIGVAIYFLDIPK 223 RG+ G++G + + +GP +GG W++ + IP+ I + L + Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH--WSYLLLIPMITIITVPFLMKLLKKE 192 Query: 224 KSVKFRWDYLGTFFMIVAATSLILFTTWGGSQYEWSDPIIIGLIITTIVAAALLVVVELR 283 +K +D G M V +LFTT Y +I ++++ + V + Sbjct: 193 VRIKGHFDIKGIILMSVGIVFFMLFTT----SYSI------SFLIVSVLSFLIFVKHIRK 242 Query: 284 AKDPLVPMSFFQNRNFTLTTIAGLILGIAMFGIIGYLPTYLQMVHGINATEAGYMLI-PM 342 DP V +N F + + G I+ + G + +P ++ VH ++ E G ++I P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 343 MVGMMGTSIWTGIRISNTGKYKLFPPIGMVVTFVALIFFARMEVSTTLWQIGIYLFVLGV 402 + ++ GI + G + IG+ V+ + + + +T+ + I +FVLG Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVL-NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLG- 360 Query: 403 GLGLAMQVLVLIVQNTLPTAVVGSATAVNNFFRQIGSSLGSALVGGM 449 GL V+ IV ++L G+ ++ NF + G A+VGG+ Sbjct: 361 GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 143 bits (363), Expect = 1e-39 Identities = 109/417 (26%), Positives = 186/417 (44%), Gaps = 20/417 (4%) Query: 50 IIAALMLAMLLSSLGQTIFGSALPTIVGELGGV-NHMTWVITAFLLGQTISLPIFGKLGD 108 I+ L + S L + + +LP I + WV TAF+L +I ++GKL D Sbjct: 15 ILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 109 QFGRKYLFMFAIALFVVGSIIGALAQNMTT-LIVARALQGIAGGGLMILSQAITADVTTA 167 Q G K L +F I + GS+IG + + + LI+AR +QG L + A Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPK 134 Query: 168 RERAKYMGIMGSVFGLSSILGPLLGGWFTDGPGWRWGLWLNVPIGIIALVAIAVLLKLPA 227 R K G++GS+ + +GP +GG W L +P +I ++ + L+KL Sbjct: 135 ENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIH--WSYLLLIP--MITIITVPFLMKLLK 190 Query: 228 RE-RGKVSVDWLGSIFMAIATTAFVLAVTWGGNEYEWASPMIIGLFITTLVAAIVFVFVE 286 +E R K D G I M++ F+L T Y I ++++ ++FV Sbjct: 191 KEVRIKGHFDIKGIILMSVGIVFFMLFTT----SYSI------SFLIVSVLSFLIFVKHI 240 Query: 287 KRAVDPLVPMGLFSNRNFVLTAVAGIGVGLFMMGTIAYMPTYLQMVHGLNPTQAGLMLI- 345 ++ DP V GL N F++ + G + + G ++ +P ++ VH L+ + G ++I Sbjct: 241 RKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIF 300 Query: 346 PMMIGLIGTSTVVGNIVSKTGKYKWYPFIGMLIMVLALVLLSTLTPSASLALIGLYFFVF 405 P + +I + G +V + G IG+ + ++ + S L + S + + FV Sbjct: 301 PGTMSVIIFGYIGGILVDRRGPLYVL-NIGVTFLSVSFLTASFLLETTSWFMTIIIVFVL 359 Query: 406 GFGLGCAMQILVLIVQNSFPITMVGTATGSNNFFRQIGGAVGSALIGGLFISNLSDR 462 G GL ++ IV +S G NF + G A++GGL L D+ Sbjct: 360 G-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415