>PF08280#M protein trans-acting positive regulator Length = 530 Score = 809 bits (2091), Expect = 0.0 Identities = 530/530 (100%), Positives = 530/530 (100%) Query: 1 MISIFSLDRIEIGEYTYQRLIWLSKCRKRGPLSLIEKYLESSIESKCQLVVLFFKTSSLP 60 MISIFSLDRIEIGEYTYQRLIWLSKCRKRGPLSLIEKYLESSIESKCQLVVLFFKTSSLP Sbjct: 1 MISIFSLDRIEIGEYTYQRLIWLSKCRKRGPLSLIEKYLESSIESKCQLVVLFFKTSSLP 60 Query: 61 ITEVAEKTGLTFLQLNHYCEELNAFFPDSLSMTIQKRMISCQFTHPSKETYLYQLYASSN 120 ITEVAEKTGLTFLQLNHYCEELNAFFPDSLSMTIQKRMISCQFTHPSKETYLYQLYASSN Sbjct: 61 ITEVAEKTGLTFLQLNHYCEELNAFFPDSLSMTIQKRMISCQFTHPSKETYLYQLYASSN 120 Query: 121 VLQLLAFLIKNGSHSRPLTDFARSHFLSNSSAYRMREALIPLLRNFELKLSKNKIVGEEY 180 VLQLLAFLIKNGSHSRPLTDFARSHFLSNSSAYRMREALIPLLRNFELKLSKNKIVGEEY Sbjct: 121 VLQLLAFLIKNGSHSRPLTDFARSHFLSNSSAYRMREALIPLLRNFELKLSKNKIVGEEY 180 Query: 181 RIRYLIALLYSKFGIKVYDLTQQDKNIIHSFLSHSSTHLKTSPWLSESFSFYDILLALSW 240 RIRYLIALLYSKFGIKVYDLTQQDKNIIHSFLSHSSTHLKTSPWLSESFSFYDILLALSW Sbjct: 181 RIRYLIALLYSKFGIKVYDLTQQDKNIIHSFLSHSSTHLKTSPWLSESFSFYDILLALSW 240 Query: 241 KRHQFSVTIPQTRIFQQLKKLFVYDSLKKSSRDIIETYCQLNFSAGDLDYLYLIYITANN 300 KRHQFSVTIPQTRIFQQLKKLFVYDSLKKSSRDIIETYCQLNFSAGDLDYLYLIYITANN Sbjct: 241 KRHQFSVTIPQTRIFQQLKKLFVYDSLKKSSRDIIETYCQLNFSAGDLDYLYLIYITANN 300 Query: 301 SFASLQWTPEHIRQCCQLFEENDTFRLLLNPIITLLPNLKEQKASLVKALMFFSKSFLFN 360 SFASLQWTPEHIRQCCQLFEENDTFRLLLNPIITLLPNLKEQKASLVKALMFFSKSFLFN Sbjct: 301 SFASLQWTPEHIRQCCQLFEENDTFRLLLNPIITLLPNLKEQKASLVKALMFFSKSFLFN 360 Query: 361 LQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILR 420 LQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILR Sbjct: 361 LQHFIPETNLFVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILR 420 Query: 421 NIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITH 480 NIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITH Sbjct: 421 NIQPPLVVVFVASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITH 480 Query: 481 SQLIPFVHHELTKGIAVAEISFDESILSIQELMYQVKEEKFQADLTKQLT 530 SQLIPFVHHELTKGIAVAEISFDESILSIQELMYQVKEEKFQADLTKQLT Sbjct: 481 SQLIPFVHHELTKGIAVAEISFDESILSIQELMYQVKEEKFQADLTKQLT 530
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 30.3 bits (68), Expect = 0.018 Identities = 19/107 (17%), Positives = 27/107 (25%), Gaps = 2/107 (1%) Query: 279 TSEHNPKTPELDGTPIPEDPKRPDESSEPALPPLMPELDGEEVP--EVPSESLEPALPPL 336 TS H PI P + P PE E P E E + A + Sbjct: 35 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 94 Query: 337 MPELDGEEVPEVPSESLEPALPPLMPELDGEEVPEVPSESLEPALPP 383 + P + +E + P P + P Sbjct: 95 EKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSST 141 Score = 30.3 bits (68), Expect = 0.021 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 7/88 (7%) Query: 272 DPPKPGDTSEHNPKTPELDGTPIPEDPKRPDESSEPALPPLMPELDGEEVPEVPSESLEP 331 +PP+ PE + PIPE PK E P + P + +E Sbjct: 61 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK-------PKPKPKPVKKVEQ 113 Query: 332 ALPPLMPELDGEEVPEVPSESLEPALPP 359 + P P + P Sbjct: 114 PKRDVKPVESRPASPFENTAPARPTSST 141
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 58.9 bits (142), Expect = 9e-12 Identities = 70/291 (24%), Positives = 110/291 (37%), Gaps = 49/291 (16%) Query: 27 KQTTDNSLKIAMITNQTGIDDKSFNQSAWEGLQAWGKENKLEKGKGYDYFQSANESEFTT 86 K LK +IT++ IDDKSFNQSA+E L+ + K G + S F + Sbjct: 55 KNAELLKLKPVLITDEGKIDDKSFNQSAFEALK------AINKQTGIEINNVEPSSNFES 108 Query: 87 NLESAVTNGYNLVFGIGFPLHDAVEKVAANN----PDNHFAIVD---DVIKGQKNVASIT 139 SA++ G+ + GF ++++ + N I+ D+ K S+ Sbjct: 109 AYNSALSAGHKIWVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQ 168 Query: 140 FSDHEAAYLAGVAAAKTTKTKQ-----VGFVGGMEGDVVKRFEKGFEAGVKSVDDTIKVR 194 F+ E+A+ G A A + V GG V F +GF G+ + K Sbjct: 169 FNIKESAFTTGYAIASWLSEQDESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSS 228 Query: 195 VAYAGS-------FADAARGKTI-------AAAQYAEGADVIYHAAGGTGAGVFSEAKSI 240 Y S F + T+ A VI A G F + Sbjct: 229 KIYHTSPVKLDSGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVA---GPATFETVRLA 285 Query: 241 NEKRKEEDKVWVIGVDRDQSEDGKYTTKDGKSANFVLTSSIKEVGKALVKV 291 N+ + +VIGVD DQ +D +LTS +K + +A+ + Sbjct: 286 NKGQ------YVIGVDSDQG-----MIQDKDR---ILTSVLKHIKQAVYET 322
>TACYTOLYSIN#Bacterial thiol-activated pore-forming cytolysin signature. Length = 574 Score = 893 bits (2309), Expect = 0.0 Identities = 568/574 (98%), Positives = 571/574 (99%) Query: 1 MKDMSNKKTFKKYSRVAGLLTAALIIGNLVTANAESNKQNTASTETTTTNEQPKPESSEL 60 MKDMSNKK FKKYSRVAGLLTAALI+GNLVTANA+SNKQNTA+TETTTTNEQPKPESSEL Sbjct: 1 MKDMSNKKIFKKYSRVAGLLTAALIVGNLVTANADSNKQNTANTETTTTNEQPKPESSEL 60 Query: 61 TTEKAGQKMDDMLNSNDMIKLAPKEMPLESAEKEEKKSEDKKKSEEDHTEEINDKIYSLN 120 TTEKAGQKMDDMLNSNDMIKLAPKEMPLESAEKEEKKSED KKSEEDHTEEINDKIYSLN Sbjct: 61 TTEKAGQKMDDMLNSNDMIKLAPKEMPLESAEKEEKKSEDNKKSEEDHTEEINDKIYSLN 120 Query: 121 YNELEVLAKNGETIENFVPKEGVKKADKFIVIERKKKNINTTPVDISIIDSVTDRTYPAA 180 YNELEVLAKNGETIENFVPKEGVKKADKFIVIERKKKNINTTPVDISIIDSVTDRTYPAA Sbjct: 121 YNELEVLAKNGETIENFVPKEGVKKADKFIVIERKKKNINTTPVDISIIDSVTDRTYPAA 180 Query: 181 LQLANKGFTENKPDAVVTKRNPQKIHIDLPGMGDKATVEVNDPTYANVSTAIDNLVNQWH 240 LQLANKGFTENKPDAVVTKRNPQKIHIDLPGMGDKATVEVNDPTYANVSTAIDNLVNQWH Sbjct: 181 LQLANKGFTENKPDAVVTKRNPQKIHIDLPGMGDKATVEVNDPTYANVSTAIDNLVNQWH 240 Query: 241 DNYSGGNTLPARTQYTESMVYSKSQIEAALNVNSKILDGTLGIDFKSISKGEKKVMIAAY 300 DNYSGGNTLPARTQYTESMVYSKSQIEAALNVNSKILDGTLGIDFKSISKGEKKVMIAAY Sbjct: 241 DNYSGGNTLPARTQYTESMVYSKSQIEAALNVNSKILDGTLGIDFKSISKGEKKVMIAAY 300 Query: 301 KQIFYTVSANLPNNPADVFDKSVTFKELQRKGVSNEAPPLFVSNVAYGRTVFVKLETSSK 360 KQIFYTVSANLPNNPADVFDKSVT KELQRKGVSNEAPPLFVSNVAYGRTVFVKLETSSK Sbjct: 301 KQIFYTVSANLPNNPADVFDKSVTLKELQRKGVSNEAPPLFVSNVAYGRTVFVKLETSSK 360 Query: 361 SNDVEAAFSAALKGTDVKTNGKYSDILENSSFTAVVLGGDAAEHNKVVTKDFDVIRNVIK 420 SNDVEAAFSAALKGTDVKTNGKYSDILENSSFTAVVLGGDAAEHNKVVTKDFDVIRNVIK Sbjct: 361 SNDVEAAFSAALKGTDVKTNGKYSDILENSSFTAVVLGGDAAEHNKVVTKDFDVIRNVIK 420 Query: 421 DNATFSRKNPAYPISYTSVFLKNNKIAGVNNRSEYVETTSTEYTSGKINLSHQGAYVAQY 480 DNATFSRKNPAYPISYTSVFLKNNKIAGVNNRSEYVETTSTEYTSGKINLSHQGAYVAQY Sbjct: 421 DNATFSRKNPAYPISYTSVFLKNNKIAGVNNRSEYVETTSTEYTSGKINLSHQGAYVAQY 480 Query: 481 EILWDEINYDDKGKEVITKRRWDNNWYSKTSPFSTVIPLGANSRNIRIMARECTGLAWEW 540 EILWDEINYDDKGKEVITKRRWDNNWYSKTSPFSTVIPLGANSRNIRIMARECTGLAWEW Sbjct: 481 EILWDEINYDDKGKEVITKRRWDNNWYSKTSPFSTVIPLGANSRNIRIMARECTGLAWEW 540 Query: 541 WRKVIDERDVKLSKEINVNISGSTLSPYGSITYK 574 WRKVIDERDVKLSKEINVNISGSTLSPYGSITYK Sbjct: 541 WRKVIDERDVKLSKEINVNISGSTLSPYGSITYK 574
>PF05043#Transcriptional activator Length = 493 Score = 76.9 bits (189), Expect = 3e-20 Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Query: 2 FLTWENLFLT-NQSRRRLKLLVV----ERSYNNVGNFLKEYFGGFFEIINFDDLRLTMVD 56 ++L + Q++ +LK+LV+ + V L Y FE+ + +L L+ Sbjct: 386 ITHTKHLVINLLQNQPKLKVLVMSNFDQYHAKFVAETLSYYCSNNFELEVWTELELSKES 445 Query: 57 MVSLSSEYDVIVTDMILEQTMDSEILFFNQMAPSVVANRLTDM 99 + S YD+I+++ I+ + +++ N + + L M Sbjct: 446 LE--DSPYDIIISNFIIPPIENKRLIYSNNINTVSLIYLLNAM 486
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 92.6 bits (230), Expect = 5e-22 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 24/160 (15%) Query: 264 DIDWTQTDDDTKYESHGMHVTGIVAGNSKEAAATGERFLGIAPEAQVMFMRVFANDVMGS 323 + D D HG HV G +A +G+APEA ++ ++V G Sbjct: 74 EGDPEIFKDY---NGHGTHVAGTIAAT-----ENENGVVGVAPEADLLIIKVLNKQGSGQ 125 Query: 324 AESLFIKAIEDAVALGADVINLSLGTANGAQLSGSKPLMEAIEKAKKAGVSVVVAAGNER 383 + + I+ I A+ D+I++SLG L EA++KA + + V+ AAGNE Sbjct: 126 YDWI-IQGIYYAIEQKVDIISMSLGGP-----EDVPELHEAVKKAVASQILVMCAAGNEG 179 Query: 384 VYGSDHDDPLATNPDYGLVGSPSTGRTPTSVAAINSKWVI 423 D+ +G P SV AIN Sbjct: 180 DGDDRTDE----------LGYPGCYNEVISVGAINFDRHA 209 Score = 79.1 bits (195), Expect = 2e-17 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 18/147 (12%) Query: 561 FDSVVSKAPSQKGNEMNHFSNWGLTSDGYLKPDITAPGGDIYSTYNDNHYGSQTGTSMAS 620 ++ V+S + FSN + D+ APG DI ST Y + +GTSMA+ Sbjct: 194 YNEVISVGAINFDRHASEFSNSNN------EVDLVAPGEDILSTVPGGKYATFSGTSMAT 247 Query: 621 PQIAGASLLVKQ-YLEKTQPNLPKEKIADIVKNLLMSNAQIHVNPETKTTTSPRQQGAGL 679 P +AGA L+KQ + +L + L+ SP+ +G GL Sbjct: 248 PHVAGALALIKQLANASFERDL----TEPELYAQLIKRT-------IPLGNSPKMEGNGL 296 Query: 680 LNIDGAVTSGLYVTGKDNYGSISLGNI 706 L + + G +S ++ Sbjct: 297 LYLTAVEELSRIFDTQRVAGILSTASL 323 Score = 40.6 bits (95), Expect = 4e-05 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 127 HDWVKTKGAWDKGYKGQGKVVAVIDTGIDPAHQS 160 + ++ W++ G+G VAV+DTG D H Sbjct: 26 VEMIQAPAVWNQTR-GRGVKVAVLDTGCDADHPD 58
>BINARYTOXINA#Clostridial binary toxin A signature. Length = 454 Score = 37.7 bits (87), Expect = 3e-05 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 27/170 (15%) Query: 88 INTSLDKTKGELSQLTPELRDQVAQLDAATHRLVIPWNIVVYRYVYETFLRDIGVSHADL 147 IN L + G L+ PEL +V ++ A IP N++VYR G L Sbjct: 295 INNYL-ISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRS--------GPQEFGL 345 Query: 148 TSYYRNHQFDPHILCKIK---------LGTRYTKHSFMSTT--ALKNGAMTHRPVEVRIC 196 T + F+ KI+ G T +F+ST+ ++ A R + +RI Sbjct: 346 TLTSPEYDFN-----KIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRIN 400 Query: 197 VKKGAKAAFVEPYSAVPSEVELLFPRGCQLEV--VGAYVSQDHKKLHIEA 244 + K + A++ E E+L G + ++ V +Y KL ++A Sbjct: 401 IPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDA 450
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 34.3 bits (78), Expect = 8e-04 Identities = 41/209 (19%), Positives = 66/209 (31%), Gaps = 26/209 (12%) Query: 89 QATTLTVQAPASSPASVSHVPSSEPLPQASATSQSTVPMAP------SATPSDVPTTPLA 142 QA +V + A V P P P + + TV T A Sbjct: 1004 QADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTA 1063 Query: 143 SAKPDSFVTASS-ELTSSTNDVSTELSSESQKQPEVPQEAVPTPKAAETTEVEPKTDISE 201 + + S+ + + TN+V+ S + Q +E T + E +VE E Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKET-ATVEKEEKAKVE-TEKTQE 1121 Query: 202 DPTSANRPVPNESASEEVSSAAPAQAPAE--------KEETSAPAAQKAVADTTS----- 248 P ++ P + SE V A + + +T+ A + A TS Sbjct: 1122 VPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQ 1181 Query: 249 ----VATSNGLSYAPNHAYNPMNAGLQPQ 273 T N + + N A QP Sbjct: 1182 PVTESTTVNTGNSVVENPENTTPATTQPT 1210 Score = 32.7 bits (74), Expect = 0.003 Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 10/168 (5%) Query: 89 QATTLTVQAPASSPASVSHVPSSEPLPQASATSQSTVPMAPSATPSDVPTTPLASAKPDS 148 + +T Q S + P +EP + T P + + T +D P + Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADT-EQPAKETSSNV 1179 Query: 149 FVTASSELTSSTNDVSTELSSESQKQPEVPQEAVPTPKAAETTEVEPKTDISEDPTSANR 208 + T +T + E PE A P + +PK S Sbjct: 1180 EQPVTESTTVNTGNSVVE-------NPENTTPATTQPTVNSESSNKPKNRHRRSVRS--V 1230 Query: 209 PVPNESASEEVSSAAPAQAPAEKEETSAPAAQKAVADTTSVATSNGLS 256 P E A+ + + + A A VA + G + Sbjct: 1231 PHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKA 1278
>PF05844#YopD protein Length = 295 Score = 26.9 bits (59), Expect = 0.005 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 12 MASISGGNAPGDAVIGGLGGLASG--LKFCKLLHPVLAG 48 MA I+G A AV+G LG L +G + K L + G Sbjct: 123 MAVIAGVGALASAVVGSLGALKNGKAISQEKTLQKNIDG 161
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.8 bits (228), Expect = 1e-23 Identities = 29/133 (21%), Positives = 65/133 (48%), Gaps = 1/133 (0%) Query: 3 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62 IL+ DD+ I ++ L++ GYD+ + DL++ D+++P+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VAKEIRKT-SHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 + I+K +P++++SA+++ + E GA DY+ KPF EL+ + L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 IETAVAEENASSG 134 + + +++ Sbjct: 125 RPSKLEDDSQDGM 137
>PF06580#Sensor histidine kinase Length = 349 Score = 44.5 bits (105), Expect = 5e-07 Identities = 30/187 (16%), Positives = 72/187 (38%), Gaps = 34/187 (18%) Query: 253 DETNRMMRMISDLL--NLSRIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVY 310 + M+ +S+L+ +L + + LA E+T +++ +F +++ ++ Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVVDSYLQLASIQF---EDRLQFENQIN 247 Query: 311 EIVRDYPITSVWLEIDNDKMTQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQG 370 + D + + ++ ++EN + + I P GGKI ++ + + + + + G Sbjct: 248 PAIMDVQVPPMLVQT-------LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 371 LGIPKTDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHHGF---IWAKSDYGKGS 427 K + TG GL +E ++ +G I GK Sbjct: 301 SLALKNT------------------KESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKV- 341 Query: 428 TFTIVLP 434 +++P Sbjct: 342 NAMVLIP 348
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 47.8 bits (113), Expect = 2e-07 Identities = 48/313 (15%), Positives = 95/313 (30%), Gaps = 10/313 (3%) Query: 209 AKVAKQFLELDANRKQLQLDILVKDIDIAQERQTKDTEALAALQQDLASYYAKRQSMEED 268 + VA + + Q + D + + + + + + AL+ + + +E Sbjct: 41 SAVATRSQTDTLEKVQERADKFEIENNTLKLKNSDLSFNNKALKDHNDELTEELSNAKEK 100 Query: 269 YQKFKQKKQVISQESDQTQTTLLELTKLIADLEKQIELVKLESGQ---EAEKKAEAKKHL 325 +K + + + + + +L K + + E A K L Sbjct: 101 LRKNDKSLSEKASKIQELEARKADLEKALEGAMNFSTADSAKIKTLEAEKAALAARKADL 160 Query: 326 EQLQEQLDGFQAEEKQRTEQLLHIDQQLCDVKQQLNELSNALERFSSDPDQLMETLREEF 385 E+ E F + + + L L + +L + FS+ ++TL E Sbjct: 161 EKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEK 220 Query: 386 VLLMQKEAALSNQLTALKAHLDKEKQARQHKAQEYQLLVTKLDQLNDESQKAQAHYKAQK 445 L ++A L L + + E L + +L + A A Sbjct: 221 AALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADS 280 Query: 446 EQVEMLLQNYQEGDKRVQELERDYQLKQERLFDLLDQ-------KKGKEARKASLESIQK 498 +++ L + +LE Q+ L KK EA LE K Sbjct: 281 AKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNK 340 Query: 499 SHSQFYAGVRAVL 511 +R L Sbjct: 341 ISEASRQSLRRDL 353 Score = 30.4 bits (68), Expect = 0.047 Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 8/163 (4%) Query: 676 ELEQISEELTRLVEQLKITEKEVAALQSDLIAKKEELTQLKLAGDQARLAEQRAQMAYQQ 735 LE L L+ + + AK + L K A E R + Sbjct: 145 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA------LEARQAELEKA 198 Query: 736 LQEKQEDSKALLAALDQSQTTHSDESLLAEQARIEEALTAIAKKKNALTCDIDDIKENKD 795 L+ S A A + + +L A +A +E+AL A + I ++ K Sbjct: 199 LEGAMNFSTADSAKIKTLE--AEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA 256 Query: 796 LIRQKTQNIHQALSQARLQERDLLNEKKFEQANQSRLRTQLKQ 838 + + + +AL A + K +A ++ L + Sbjct: 257 ALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKAD 299
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 4e-05 Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 52 SVIGVLFNLFGGVIADSFKR----KKIIITTNILCGTACLVLSFLTKEQWLVYAIVLTNV 107 + G+L +L +I ++ ++ I GT ++L+F T W+ + I+ V Sbjct: 253 AAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFAT-RGWMAFPIM---V 308 Query: 108 ILAFMSAFSSPSYKAFTKEIVKKDSISQLNSLLETTSTVIKVTVPMVAIFLYKLLGIHGV 167 +LA P+ +A V ++ QL L +++ + P++ +Y + Sbjct: 309 LLAS-GGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA----ASI 363 Query: 168 LLLDGLSFLIAALLISFILPV 188 +G +++ A L LP Sbjct: 364 TTWNGWAWIAGAALYLLCLPA 384
>PF05043#Transcriptional activator Length = 493 Score = 26.8 bits (59), Expect = 0.037 Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 10/83 (12%) Query: 71 YLTNLPALAHDSLLLSN----VSYQAT-----EALLKLYDQSRSLNKQVFLAFDKASSYS 121 L+++ + D + S+ + S + F+ F++ Sbjct: 45 DLSHVKSAFPDLIFHSSTNGIRIINTDDSDIEMVYHHFFKHSTHFSILEFIFFNEGCQAE 104 Query: 122 PDANQL-LSENTVLRLSSNGNEL 143 + +S +++ R+ S N++ Sbjct: 105 SICKEFYISSSSLYRIISQINKV 127
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 33.9 bits (77), Expect = 0.001 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 34/235 (14%) Query: 174 DNIARYKERLKDKSDQLTTFRNARKYTF------ISNLVGGKKQFEANVSEIKRLEYDLA 227 + K L + L I L K EA +E+++ Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAM 273 Query: 228 HLQDTHQDKIDSDDIEKNQQKLQLRNTKLELESSLRDKQRRLKLLDIS------------ 275 + KI + + EK + + + + + + ++Q + LD S Sbjct: 274 NFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333 Query: 276 -IEFGLYPTESDLTELQQYFPDTNLKKLYEVEAYHKKLETIL------------DSEFST 322 +E +E+ L++ D + + ++EA H+KLE D + S Sbjct: 334 KLEEQNKISEASRQSLRRDL-DASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASR 392 Query: 323 E-RESLIAEIDELESQLTTLNQELQELGNIPNLS-SEYLENYSKLTATINALKEQ 375 E ++ + ++E S+L L + +EL L+ E E +KL A ALKE+ Sbjct: 393 EAKKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEK 447
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.2 bits (65), Expect = 0.011 Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 13/77 (16%) Query: 21 SMSELARNVGIAKSTMSRYFNKTREFPLNRADDFAKALNISTEFLLGIDLNSEVDGSELL 80 S+ E+A+ G+ + + +F +++D F++ +S + ++L + Sbjct: 33 SLGEIAKAAGVTRGAIYWHFK-------DKSDLFSEIWELSESNIGELELEYQAK----- 80 Query: 81 GIYRELEEQRRVIVLDT 97 + R I++ Sbjct: 81 -FPGDPLSVLREILIHV 96
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 25.2 bits (55), Expect = 0.030 Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 6 KRLKAERIASGMTQCEVAQSMGWK 29 K L +S +TQC++ +S+GW+ Sbjct: 562 KWLSQNNKSSYLTQCKMDKSLGWR 585
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 51.8 bits (124), Expect = 2e-10 Identities = 30/119 (25%), Positives = 50/119 (42%) Query: 10 YLRRQQKRNKSFYNTLKTIVEEWMSAEGIVGKLPSYHLLLFTIQLEELLKTYLPPIPVYL 69 ++ K N+ Y +LK IVEEWM+ L H LF +E++L+ PP+ V Sbjct: 371 FVSPYYKGNQKLYTSLKLIVEEWMAKLPGKRYLNHKHFHLFCHYVEQILRNIQPPLVVVF 430 Query: 70 LTNNTAALDLMTNALSIYFPPAIATVMPVNVEIIPFKDIVKEKQSVIIADRQYLNLIQH 128 + +N L+T++ YF + I K ++I Q + + H Sbjct: 431 VASNFINAHLLTDSFPRYFSDKSIDFHSYYLLQDNVYQIPDLKPDLVITHSQLIPFVHH 489
>FLAGELLIN#Flagellin signature. Length = 507 Score = 32.3 bits (73), Expect = 0.019 Identities = 38/280 (13%), Positives = 58/280 (20%), Gaps = 24/280 (8%) Query: 1175 KVEQAKLDAIKSVDDAQTADAINDALGKGIENINNQYQHGDGVDVRKATAKGD--LEKEA 1232 V K + + + D G G V A D A Sbjct: 173 NVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAA 232 Query: 1233 AKVKALIAKDPTLTQADKDKQTAAVDAAKNTAIAAVDKATTADGVNQELGKGITAINKAY 1292 + + A+ AIA K G T K Sbjct: 233 NGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTG 292 Query: 1293 RPGEGVKARKEAAKADLEKEAAKVKALIAKDPTLTQADKDKQTAAVDAAKNTAIAAVDKA 1352 G G + + EK V + A + A + N DK Sbjct: 293 NDGNGKVS----TTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKT 348 Query: 1353 TTAEGINQELGKGITAINKAYRPGEGVKARKEAAKADLEKEAAKVKALITNDPTLTKADK 1412 +L ++ G +T A K Sbjct: 349 KNESAKLSDLEANNAVKGESKITVNG-----------------AEYTANAAGDKVTLAGK 391 Query: 1413 AKQTGAVAKALKAAIAAVDKATTAEGINQELGKGITAINK 1452 A + I A + L +A++K Sbjct: 392 TMFIDKTASGVSTLINEDA-AAAKKSTANPLASIDSALSK 430
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 31.3 bits (71), Expect = 0.003 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 37 SYQDFLDVLLSLFQFVIIILVLFFYSATINLGEVLTFLTQTSWHWQILCYLVLYLMAIIE 96 S + ++ L S+ + V++ ++++ NL +L T L +L + +I Sbjct: 133 SIKSLVEFLKSILKVVLLSILIWII-IKGNLVTLLQLPTCGIECITPLLGQILRQLMVIC 191 Query: 97 MTLLVLILIFDVLLQK 112 V+I I D + Sbjct: 192 TVGFVVISIADYAFEY 207
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 44.4 bits (105), Expect = 6e-07 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 13/112 (11%) Query: 170 QQLQDLNDAYADAQAEVNKAQIALNDTVVISSVSGTVVE-----VNNDIDPSSKNSQTLV 224 +L+ D E+ K + +V+ + VS V + + ++TL+ Sbjct: 302 DKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTT----AETLM 357 Query: 225 HVATEGQ-LQVKGTLTEYDLANVKVGQSVKIKSKVYSNQEW---TGKISYVS 272 + E L+V + D+ + VGQ+ IK + + + GK+ ++ Sbjct: 358 VIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409 Score = 37.1 bits (86), Expect = 1e-04 Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 29/185 (15%) Query: 21 ITLVLIITGVVLWKQQQNTLTADIAKEPYSTVSVTEGSIASSTLLSGTVKALSEEYIYFD 80 ++ + + + + V+ G + S S +K + + Sbjct: 62 YFIMGFLVIAFIL--------SVLG--QVEIVATANGKLTHSGR-SKEIKPIENSIV--- 107 Query: 81 ANKGNDATVTVKVGDQVTQGQQLVQYNTTTA-------QSAYDTAVRSLNKIGRQINHLK 133 + VK G+ V +G L++ A QS+ A + ++ Sbjct: 108 ------KEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIE 161 Query: 134 TYGVPAV--STETNKDEATGEETTTTVQPSAQQNANYKQQLQDLNDAYADAQAEVNKAQI 191 +P + E + EE +Q + ++ Q +AE Sbjct: 162 LNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLA 221 Query: 192 ALNDT 196 +N Sbjct: 222 RINRY 226
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 37.4 bits (87), Expect = 1e-04 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 20/81 (24%) Query: 20 ADVLIDGKQIVKIASA-----------IECQEAQVIDASGLIVAPGLVDIHVHFREPGQT 68 AD+ + +I I A I +VI G IV G +D H+HF P Q Sbjct: 86 ADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFICPQQ- 144 Query: 69 HKEDIHTGALAAAAGGVTTVV 89 A G+T ++ Sbjct: 145 --------IEEALMSGLTCML 157
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 27.5 bits (61), Expect = 0.008 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Query: 7 RMILMFDMPTDTAEE-----RKAYRKFRKFLLSEGFIMHQFSIY 45 R + FD+ T + E+ R+ Y +KF+L GF Q+S Y Sbjct: 5 RKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQYSGY 48
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 113 bits (283), Expect = 3e-28 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 12 KIRNFSIIAHIDHGKSTLADRILEK---TETVSSREMQAQLLDSMDLERERGITIKLNAI 68 KI N ++AH+D GK+TL + +L + S + D+ LER+RGITI+ Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 ELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLA 128 + E ++IDTPGH+DF EV RSL+ +GAIL++ A G++AQT + Sbjct: 62 SFQW-----ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL 116 Query: 129 LDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDA 164 + + INKID D V ++++ + + Sbjct: 117 RKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 152 Score = 93.4 bits (232), Expect = 6e-22 Identities = 44/214 (20%), Positives = 93/214 (43%), Gaps = 16/214 (7%) Query: 171 SAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGD 230 SAK IGI+ ++E I K + T + L +F Y R + +R+ +G++ D Sbjct: 220 SAKNNIGIDNLIEVITNKFYSSTHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRD 279 Query: 231 KIQMMSNGKTFDVTEVGIFTP-KAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNP 289 +++ K +TE+ + D +G++ + + +GDT L Sbjct: 280 SVRISEKEKI-KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSV-LGDTKLLPQRE 337 Query: 290 AKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFE--PETSQALGFGF 347 E P++ + P + + L +AL ++ +D L++ T + + Sbjct: 338 RIENPL------PLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEII---- 387 Query: 348 RCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVY 381 FLG + M+V L+ ++++++ + P+V+Y Sbjct: 388 -LSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Score = 43.3 bits (102), Expect = 3e-06 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%) Query: 393 VSNPSEFPDPTRVAFIE----------EPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMD 442 VS P++F + + EPY+ +I PQE++ + + + V Sbjct: 510 VSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ 569 Query: 443 YIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDMSEYR 486 + +N V + +IP I ++ L T G + ++ Y Sbjct: 570 -LKNNEVILSGEIPARCI-QEYRSDLTFFTNGRSVCLTELKGYH 611
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 72.4 bits (177), Expect = 7e-16 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 12/105 (11%) Query: 298 QPGKPAPKTPEVPQKPDTAPHTPKTPQIPGQSKDVTPAPQSPSNRGLNKPQTQSGNQLAK 357 + K A + ++ + TP P ++ +G NQ Sbjct: 447 KLAKQAEELAKLRAGKASDSQTPDAK----------PGNKAVPGKGQAPQAGTKPNQ--N 494 Query: 358 TPAAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN 402 +T RQLP+TGET NPFFTAAA+ +M TAGV AV KR+E N Sbjct: 495 KAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKRKEEN 539
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 72.6 bits (178), Expect = 6e-17 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 1/130 (0%) Query: 3 KILAIDDDKEILKLMKTSLEIENYHVITCQEIELPIVFDDFKGYDLILLDIMMPNISGTE 62 IL DDD I ++ +L Y V + DL++ D++MP+ + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 FCYKIREE-VHSPIIFVSALDGDNEIVQALNIGGDDFIVKPFSLKQFVAKVNSHLKREER 121 +I++ P++ +SA + ++A G D++ KPF L + + + L +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 AKIKNEAEER 131 K E + + Sbjct: 125 RPSKLEDDSQ 134
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 31.6 bits (71), Expect = 0.003 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 7/47 (14%) Query: 184 NKWYLFPYDWSLKLLEPMTRMRINSIPFGAEFVPDYSQIFISLFLGI 230 NK Y+ +W+ +P+T+ +IN+IP AEF+ + S I S +G+ Sbjct: 639 NKAYI---EWT----DPITKAKINTIPTSAEFIKNLSSIRRSSNVGV 678
>MYCMG045#Hypothetical mycoplasma lipoprotein (MG045) signature. Length = 483 Score = 36.6 bits (84), Expect = 1e-04 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 31 SGSQSDKLVIYNWGDYIDPALLKKFTKETGIEVQYETFDSNEAMYTKIKQGGTTYDIAVP 90 S S V+ N+ YI P LL++ + + + T+ SNE + TY +AV Sbjct: 21 SSCGSTTFVLANFESYISPLLLER--VQEKHPLTFLTYPSNEKLINGF--ANNTYSVAVA 76 Query: 91 SDYTIDKMIKENLLNKLDKSKL 112 S Y + ++I+ +LL+ +D S+ Sbjct: 77 STYAVSELIERDLLSPIDWSQF 98
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 67.2 bits (164), Expect = 3e-15 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 2/131 (1%) Query: 3 VLIIEDDPMVDFIHRNYLEKLNLFDRIISSDSMKAVQSILTDYAIDLILLDIHITDGNGI 62 +L+ +DD + + L + + + + + + DL++ D+ + D N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGY--DVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 QFLEKWRAQHIPCEVIIISAANDGNIIRDGFHLGIIDYLIKPFTFERFQESIQQFVTHRE 122 L + + V+++SA N G DYL KPF I + + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 HLANQQLEQAQ 133 ++ + +Q Sbjct: 124 RRPSKLEDDSQ 134
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 65.8 bits (160), Expect = 4e-14 Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 45/299 (15%) Query: 36 DLKVAMVTDTGGVDDKSFNQSAWEGLQSWGKEMGLQKGTGFDYFQSTSESEYATNLDTAV 95 LK ++TD G +DDKSFNQSA+E L++ + K TG + S + + ++A+ Sbjct: 61 KLKPVLITDEGKIDDKSFNQSAFEALKA------INKQTGIEINNVEPSSNFESAYNSAL 114 Query: 96 SGGYQLIYGIGFALKDAIAKAAGD------NEGVKFVIIDDIIEGKDNV-ASVTFADHEA 148 S G+++ GF + +I + +K + ID IE + S+ F E+ Sbjct: 115 SAGHKIWVLNGFKHQQSIKQYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFNIKES 174 Query: 149 AYLAGIAAAKTTKTK-----TVGFVGGMEGTVITRFEKGFEAGVKS---------VDDTI 194 A+ G A A + V GG +T F +GF G+ + T Sbjct: 175 AFTTGYAIASWLSEQDESKRVVASFGGGAFPGVTTFNEGFAKGILYYNQKHKSSKIYHTS 234 Query: 195 QVKVDYAGSFGDAAKGKTIAAAQYAAGADVIYQAAGG---TGAGVFNEAKAINEKRSEAD 251 VK+D +G I + ADV Y G F + N+ + Sbjct: 235 PVKLD-SGFTAGEKMNTVINNVLSSTPADVKYNPHVILSVAGPATFETVRLANKGQ---- 289 Query: 252 KVWVIGVDRDQKDEGKYTSKDGKEANFVLASSIKEVGKAVQLINKQVADKKFPGGKTTV 310 +VIGVD DQ +D +L S +K + +AV + +K G K V Sbjct: 290 --YVIGVDSDQG-----MIQDKDR---ILTSVLKHIKQAVYETLLDLILEKEEGYKPYV 338
>PF06580#Sensor histidine kinase Length = 349 Score = 39.1 bits (91), Expect = 2e-05 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 312 YGKIFYFQNQVNRSLRMDKALLKQLITILFDNAIKY----TDKNGIIEIIVKTTDKNLLI 367 + F+NQ+N ++ D + L+ L +N IK+ + G I + + + + Sbjct: 236 FEDRLQFENQINPAIM-DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTL 294 Query: 368 SVIDNGPGITDEEKK 382 V + G K+ Sbjct: 295 EVENTGSLALKNTKE 309
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.5 bits (76), Expect = 7e-04 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 36 KGELVVIL-GASGAGKSTVLNILGGMD-TVDAGQVIIDGKD 74 K + V+L G G GKST++N L G+D D I GKD Sbjct: 594 KFDYSVVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGKD 634
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 41.5 bits (97), Expect = 5e-07 Identities = 13/48 (27%), Positives = 25/48 (52%) Query: 4 RHTETKAYVKTALTTLLTEQSFETLTVSDLTKKAGINRGTFYLHYTDK 51 ET+ ++ L ++Q + ++ ++ K AG+ RG Y H+ DK Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 56.6 bits (136), Expect = 4e-12 Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 14 KNDLIEKGIELVNKNGINQLSLRKVAQACGVSHAAPYSHFSNKEELLQEMQLHITKKFTE 73 + +++ + L ++ G++ SL ++A+A GV+ A Y HF +K +L E+ E Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 74 VLENTVSQYRGTPIFLLEFG-KAYISFFISRP 104 + +++ G P+ +L + ++ Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEE 104
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 4e-04 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 6/151 (3%) Query: 95 KAKDKAFEFKQKRMMKTVQSQRANAAGQNGSQFHYGTVSRSSASNTSVQRVKGARQTQKT 154 + A KQ+ Q A + S A + Q + A+ +T Sbjct: 1036 TTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKA---NTQTNEVAQSGSET 1092 Query: 155 IKQSARNSKNAIKTAAKGTVKT-TQKSVKTAQATSKAAIKTTQ--TTAKSAQAAAKASAK 211 + +K + K T+K+ + + TS+ + K Q T A+ A + Sbjct: 1093 KETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPT 1152 Query: 212 TAQKAAQAARATAKASAAAVKTTAKATVSAV 242 K Q+ T + K T+ V Sbjct: 1153 VNIKEPQSQTNTTADTEQPAKETSSNVEQPV 1183
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 38.1 bits (88), Expect = 3e-05 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 4/150 (2%) Query: 120 RFSLASVDTATIVQEAERTKDGKSAKTGQPEPDIGVQEKAQKDQLLDALMGKPVQKEDNA 179 ++ L +V+ + E K ++ T Q D + + + D A Sbjct: 968 KYKLRNVNGRYDLYNPEVEKRNQTVDTTNITT----PNNIQADVPSVPSNNEEIARVDEA 1023 Query: 180 PNPSVAKTEKSPLSEPTLEKRSKSAEGATLNKEKPSVKEELRKIKESRKEQETEVSPTLN 239 P P A S +E E + ++ N++ + + + + + N Sbjct: 1024 PVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTN 1083 Query: 240 QEKSSNQAKQPVKKTEHKQPARRKKPKKSK 269 + S + + TE K+ A +K +K+K Sbjct: 1084 EVAQSGSETKETQTTETKETATVEKEEKAK 1113 Score = 35.8 bits (82), Expect = 2e-04 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 13/151 (8%) Query: 132 VQEAERTKDGKSAKT------GQPEPDIGVQEKAQKDQLLDALMGKPV---QKEDNAPN- 181 V++ +T D + T P +E A+ D+ E A N Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 182 PSVAKTEK---SPLSEPTLEKRSKSAEGATLNKEKPSVKEELRKIKESRKEQETEVSPTL 238 +KT + +E T + R + E + K E + E+++ Q TE T Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 239 NQEKSSNQAKQPVKKTEHKQPARRKKPKKSK 269 EK + K E + + PK+ + Sbjct: 1105 TVEKEEKAKVETEKTQEVPKVTSQVSPKQEQ 1135
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 29.8 bits (67), Expect = 0.030 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 14/100 (14%) Query: 398 NDEKAVRAIEKRLTDTDQSRAKALEKEQRKLNKRLAELDRL----FSSLYEDKVMERITE 453 N + I K+L+ D + + EK ++ +L +LD+ F+ + +K + +E Sbjct: 146 NGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSE 205 Query: 454 RNFEMMSGKYQKEQLEIE----------ARLKEVTETLND 483 F+ S Y I ++K + E L Sbjct: 206 GAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQ 245
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 1075 bits (2781), Expect = 0.0 Identities = 494/638 (77%), Positives = 562/638 (88%) Query: 1 MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTDTMNLERQRGITIQTAV 60 MKIIN+G+LAHVDAGKTTLTESLLY SGAI ELGSVD+GTTRTD LERQRGITIQT + Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 61 TSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAKDGIQAQTRILFHALQTMK 120 TSFQWE+ KVNIIDTPGHMDFLAEVYRSLSVLDGA+LL+SAKDG+QAQTRILFHAL+ M Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 121 IPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQHPHINVTDNDDMEQWDAVIM 180 IPTIFFINKIDQ GIDL VY+++K KLS+EI++KQKV +P++ VT+ + EQWD VI Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 181 GNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYHGSAKNNLGIRQLIEVIASKFYS 240 GND+LLEKYMSGK + ELEQEE+ RF N +LFPVYHGSAKNN+GI LIEVI +KFYS Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNIGIDNLIEVITNKFYS 240 Query: 241 STPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLHLRDVIRISEKEKIKITEMCVPTNG 300 ST GQSELCG+VFKIEYSEKR+R Y+R+YSG LHLRD +RISEKEKIKITEM NG Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEKIKITEMYTSING 300 Query: 301 ELYSSDTACSGDIVILPNDVLQLNSILGNEMLLPQRKFIENPLPMLQTTIAVKKSEQREI 360 EL D A SG+IVIL N+ L+LNS+LG+ LLPQR+ IENPLP+LQTT+ K +QRE+ Sbjct: 301 ELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREM 360 Query: 361 LLGALTEISDGDPLLKYYVDTTTHEIILSFLGNVQMEVICAILEEKYHLEAEIKEPTVIY 420 LL AL EISD DPLL+YYVD+ THEIILSFLG VQMEV CA+L+EKYH+E EIKEPTVIY Sbjct: 361 LLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIY 420 Query: 421 MERPLRKAEYTIHIEVPPNPFWASVGLSIEPLPIGSGVQYESRVSLGYLNQSFQNAVMEG 480 MERPL+KAEYTIHIEVPPNPFWAS+GLS+ PLP+GSG+QYES VSLGYLNQSFQNAVMEG Sbjct: 421 MERPLKKAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEG 480 Query: 481 VLYGCEQGLYGWKVTDCKICFEYGLYYSPVSTPADFRLLSPIVLEQALKKAGTELLEPYL 540 + YGCEQGLYGW VTDCKICF+YGLYYSPVSTPADFR+L+PIVLEQ LKKAGTELLEPYL Sbjct: 481 IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYL 540 Query: 541 HFEIYAPQEYLSRAYHDAPRYCADIVSTQIKNDEVILKGEIPARCIQEYRNDLTYFTNGQ 600 F+IYAPQEYLSRAY DAP+YCA+IV TQ+KN+EVIL GEIPARCIQEYR+DLT+FTNG+ Sbjct: 541 SFKIYAPQEYLSRAYTDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGR 600 Query: 601 GVCLTELKGYHPAIGKFICQPRRPNSRIDKVRHMFHKL 638 VCLTELKGYH G+ +CQPRRPNSRIDKVR+MF+K+ Sbjct: 601 SVCLTELKGYHVTTGEPVCQPRRPNSRIDKVRYMFNKI 638
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 126 bits (317), Expect = 7e-33 Identities = 76/407 (18%), Positives = 146/407 (35%), Gaps = 95/407 (23%) Query: 1 MDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLIPIVVVNKIDK 60 +DTPGH DF EV R + ++DG +L++ A +G QTR + + + I +NKID+ Sbjct: 73 IDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQ 132 Query: 61 PSARP-------------------------------------AEVVDEVLELFIELGADD 83 + V E + +E Sbjct: 133 NGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIEGNDDLLEKYMSG 192 Query: 84 EQLE-----------------FPVVYASAINGTSSLSDDPADQEHTMAPIFDTIIDHIPA 126 + LE FPV + SA N + + + I + + Sbjct: 193 KSLEALELEQEESIRFHNCSLFPVYHGSAKNNIG------------IDNLIEVITNKFYS 240 Query: 127 PVDNSDEPLQFQVSLLDYNDFVGRIGIGRVFRGTVKVGDQVTLSKLDGTTKNFRVTKLFG 186 L +V ++Y++ R+ R++ G + + D V +S + ++T+++ Sbjct: 241 STHRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRIS----EKEKIKITEMYT 296 Query: 187 FFGLERREIQEAKAGDLIAVSGMEDIFVGETITPTDCVEALPILRIDEPTLQMTFLVNNS 246 E +I +A +G+++ + E + + + T + + P LQ T Sbjct: 297 SINGELCKIDKAYSGEIVILQN-EFLKLNSVLGDTKLLPQRERIENPLPLLQTT------ 349 Query: 247 PFAGREGKWITSRKVEER--LLAELQT----DVSLRVDPTDSPDKWTVSGRGELHLSILI 300 + K ++R LL L D LR + + +S G++ + + Sbjct: 350 ---------VEPSKPQQREMLLDALLEISDSDPLLRYYVDSATHEIILSFLGKVQMEVTC 400 Query: 301 ETMRRE-GYELQVSRPEVIIKEIDGVKCEPFERVQIDTPEEYQGAII 346 ++ + E+++ P VI E K E + I+ P A I Sbjct: 401 ALLQEKYHVEIEIKEPTVIYMERPLKKAE--YTIHIEVPPNPFWASI 445 Score = 42.5 bits (100), Expect = 3e-06 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 328 EPFERVQIDTPEEYQGAIIQSLSERKGDMLDMQMVGNGQTRLIFLIPARGLIGYSTEFLS 387 EP+ +I P+EY + +++D Q + N + L IPAR + Y ++ Sbjct: 537 EPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSDLTF 595 Query: 388 MTRGYGIMNHTFDQYLPVV 406 T G + Y Sbjct: 596 FTNGRSVCLTELKGYHVTT 614
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 52.9 bits (127), Expect = 3e-12 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 8 IRNVAIIAHVDHGKTTLVDELLKQSHTLDERKELQE--RAMDSNDLEKERGITILAKNTA 65 I N+ ++AHVD GKTTL + LL S + E + + D+ LE++RGITI T+ Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62 Query: 66 V 66 Sbjct: 63 F 63
>PF03309#Bvg accessory factor Length = 271 Score = 31.3 bits (71), Expect = 0.004 Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 14/126 (11%) Query: 5 LLGIDLGGTTIKFGILTAAGEVQE---KWAIETNILEGGKHIVPDIVASIKHRLDLYGLS 61 LL ID+ T G+++ +G+ + +W I T + D +A L G Sbjct: 2 LLAIDVRNTHTVVGLISGSGDHAKVVQQWRIRTE-----PEVTADELALTIDG--LIGDD 54 Query: 62 SADFVGIGMGSPGAVDRDTNTVTGAFNLNWKETQEVGSVVEKELGIPFAIDNDANVAALG 121 + G S V + V W V GIP +DN V A Sbjct: 55 AERLTGASGLS--TVPSVLHEVRVMLEQYWPNVPHVLIEPGVRTGIPLLVDNPKEVGA-- 110 Query: 122 ERWVGA 127 +R V Sbjct: 111 DRIVNC 116
>HELNAPAPROT#Helicobacter neutrophil-activating protein A family signature. Length = 153 Score = 151 bits (383), Expect = 1e-49 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 4/154 (2%) Query: 19 KKEASKNEKT--KAVLNQAVADLSVAASIVHQVHWYMRGPGFLYLHPKMDELLDSLNANL 76 K E +K +T + LN +++ + S +H+ HWY++GP F LH K +EL D + Sbjct: 2 KTENAKTNQTLVENSLNTQLSNWFLLYSKLHRFHWYVKGPHFFTLHEKFEELYDHAAETV 61 Query: 77 DEMSERLITIGGAPYSTLAEFSKHSKLDEAKGTYDKTVAQHLARLVEVYLYLSSLYQVGL 136 D ++ERL+ IGG P +T+ E+++H+ + + + + ++ + LV Y +SS + + Sbjct: 62 DTIAERLLAIGGQPVATVKEYTEHASITDGGN--ETSASEMVQALVNDYKQISSESKFVI 119 Query: 137 DITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERG 170 + +E D T DLF E EK +WML + G Sbjct: 120 GLAEENQDNATADLFVGLIEEVEKQVWMLSSYLG 153
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 29.4 bits (66), Expect = 0.009 Identities = 42/160 (26%), Positives = 59/160 (36%), Gaps = 25/160 (15%) Query: 70 SLIIILWASMVHWVSASYCYLLLFSLLFSLF--DWRSQ------EYPFILWLFSFVSLLL 121 +L+ + A + + LLL +L +L D P + F L Sbjct: 118 ALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGG 177 Query: 122 FYSIN---------YLSLILLLLGLLAHLRPFSIGAGDFFYLASLALVLDLTSLIWLIQL 172 F S+ YL L L +G GDF LA+L L +L ++ L Sbjct: 178 FVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLL 237 Query: 173 ASLAGITACLLL-------GIKRIPFIPYLSFGLFWIVLL 205 +SL G + L K IPF PYL+ WI LL Sbjct: 238 SSLVGAFMGIGLILLRNHHQSKPIPFGPYLAIA-GWIALL 276
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 33.4 bits (76), Expect = 7e-04 Identities = 9/34 (26%), Positives = 19/34 (55%) Query: 8 KLILQGGKAMVTIKQVAEEAGVSRSTVSRYISQK 41 +L Q G + ++ ++A+ AGV+R + + K Sbjct: 22 RLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55
>LPSBIOSNTHSS#Lipopolysaccharide core biosynthesis protein signature. Length = 166 Score = 153 bits (388), Expect = 2e-50 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 2/157 (1%) Query: 5 IGLYTGSFDPVTNGHLDIVKRASGLFDQIYVGIFDNPTKKSYFKLEVRKAMLTQALADFT 64 +Y GSFDP+T GHLDI++R LFDQ+YV + NP K+ F ++ R + +A+A Sbjct: 2 NAIYPGSFDPITFGHLDIIERGCRLFDQVYVAVLRNPNKQPMFSVQERLEQIAKAIAHLP 61 Query: 65 NVIVVTSHERLAIDVAKELRVTHLIRGLRNATDFEYEENLEYFNHLLAPNIETVYLISRN 124 N V + E L ++ A++ + ++RGLR +DFE E + N LA ++ETV+L + Sbjct: 62 NAQVDSF-EGLTVNYARQRQAGAILRGLRVLSDFELELQMANTNKTLASDLETVFLTTST 120 Query: 125 KWQALSSSRVRELIHFQSSLEGLVPQSVIAQV-EKMN 160 ++ LSSS V+E+ F ++E VP V A + ++ + Sbjct: 121 EYSFLSSSLVKEVARFGGNVEHFVPSHVAAALYDQFH 157
>CARBMTKINASE#Bacterial carbamate kinase signature. Length = 314 Score = 406 bits (1046), Expect = e-145 Identities = 141/315 (44%), Positives = 204/315 (64%), Gaps = 6/315 (1%) Query: 3 KQKIVVALGGNAIL--STDASAKAQQEALMSTSKSLVKLIKEGHEVIVTHGNGPQVGNLL 60 +++V+ALGGNA+ S + + + T++ + ++I G+EV++THGNGPQVG+LL Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 61 Query: 61 LQQAAADSEKN-PAMPLDTCVAMTEGSIGFWLVNALDNELQAQGIQKEVAAVVTQVIVDA 119 L A + PA P+D AM++G IG+ + AL NEL+ +G++K+V ++TQ IVD Sbjct: 62 LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 121 Query: 120 KDPAFENPTKPIGPFLTEEDAKKQMAESGASFKEDAGRGWRKVVPSPKPVGIKEANVIRS 179 DPAF+NPTKP+GPF EE AK+ E G KED+GRGWR+VVPSP P G EA I+ Sbjct: 122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKK 181 Query: 180 LVDSGVVVVSAGGGGVPVVEDATSKSLTGVEAVIDKDFASQTLSELVDADLFIVLTGVDN 239 LV+ GV+V+++GGGGVPV+ + + GVEAVIDKD A + L+E V+AD+F++LT V+ Sbjct: 182 LVERGVIVIASGGGGVPVILED--GEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNG 239 Query: 240 VYINFNKPDQAKLEEVTVSQMKEYITQDQFAPGSMLPKVEAAIAFVENKPNAKAIITSLE 299 + + + L EV V ++++Y + F GSM PKV AAI F+E +AII LE Sbjct: 240 AALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEW-GGERAIIAHLE 298 Query: 300 NIDNVLSANAGTQII 314 L GTQ++ Sbjct: 299 KAVEALEGKTGTQVL 313
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 34.0 bits (78), Expect = 0.002 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 805 YLPLADLLNVEEELVRLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQ 864 + +L E + V EL ++ +L+ + ++ +AK E + + + Sbjct: 248 AIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEI------LSAKEEYQLVTQLFKNEIL 301 Query: 865 AKYDATQERIAEM 877 K T + I + Sbjct: 302 DKLRQTTDNIGLL 314
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 1e-19 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 6/133 (4%) Query: 4 KVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPGMT 63 +L+ DD+ I L + G++V + ++ D++++DV MP Sbjct: 5 TILVADDDAAIRTVLNQAL--SRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 64 GLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQAKMKQFKDC 123 DL+ K P L L++S F KA E YL KP D L + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD---LTELIGIIGRA 118 Query: 124 LDAQQAESIRQEA 136 L + + E Sbjct: 119 LAEPKRRPSKLED 131
>PF06580#Sensor histidine kinase Length = 349 Score = 180 bits (458), Expect = 8e-54 Identities = 71/324 (21%), Positives = 133/324 (41%), Gaps = 34/324 (10%) Query: 251 LSKAYRMQYNRSGDLLAYVAVRKSYLLAEAVRTVFVHGLVSLLLAWLLLQLL-FRVFRNY 309 L+ AYR R G L + + A + + V+ W LL + + Sbjct: 55 LTHAYRSFIKRQG-WLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFT 113 Query: 310 IQQVSEITDTVEMVAAGDLSLTIDNSHMELELYHISEAINQMLASIKAYIDEVYVLEVEQ 369 + I V +V + M LY + +A ID+ + Sbjct: 114 LPLALSIIFNVVVV-----------TFMWSLLYF---GWHFFKNYKQAEIDQWK-MASMA 158 Query: 370 RDAQMRALQSQINPHFLYNTLEYIRMYALSCQQEELADVIYAFASLLRNNI--SQDKMTT 427 ++AQ+ AL++QINPHF++N L IR L + +++ + + L+R ++ S + + Sbjct: 159 QEAQLMALKAQINPHFMFNALNNIRALILE-DPTKAREMLTSLSELMRYSLRYSNARQVS 217 Query: 428 LKEELAFCEKYIYLYQMRYPDSFAYHVKIDESIADLAIPKFVIQPLVENYFVHGIDYSRN 487 L +EL + Y+ L +++ D + +I+ +I D+ +P ++Q LVEN HGI Sbjct: 218 LADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIAQLPQ 277 Query: 488 DNALSIKALDETDHLLIQVLDNGRGISQERLADMEKRLQEHQTTGNSSIGLQNVYLRLFH 547 + +K + + ++V + G L T ++ GLQNV RL Sbjct: 278 GGKILLKGTKDNGTVTLEVENTG-------------SLALKNTKESTGTGLQNVRERLQM 324 Query: 548 HFRDRVSWSMAKEPNGGFIIQIRI 571 + ++++ G + I Sbjct: 325 LYGTEAQIKLSEKQ-GKVNAMVLI 347
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 81.8 bits (202), Expect = 5e-18 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 18/139 (12%) Query: 461 IMGHVDHGKTTLLDTLRNSRVATGEAG------------------GITQHIGAYQIEEAG 502 ++ HVD GKTTL ++L + A E G GIT G + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 503 KKITFLDTPGHAAFTSMRARGASVTDITILIVAADDGVMPQTIEAINHSKAAGVPIIVAI 562 K+ +DTPGH F + R SV D IL+++A DGV QT + + G+P I I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 563 NKIDKPGANPERVIAELAE 581 NKID+ G + V ++ E Sbjct: 128 NKIDQNGIDLSTVYQDIKE 146
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 92.5 bits (229), Expect = 4e-23 Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 8/125 (6%) Query: 23 SLTAAQAILESGWGKHA-------PHNALFGIKADASWTGKSFNTKTQEEYQPGIVTDIV 75 L AQA LESGWG+ P LFG+KA +W G T E Y+ G + Sbjct: 172 HLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITTTE-YENGEAKKVK 230 Query: 76 DRFRAYDSWTDSIIDHGKFLNDNPRYQSVVGETDYKKACHAIKDAGYATASGYAELLIQL 135 +FR Y S+ +++ D+ L NPRY +V ++ A++DAGYAT YA L + Sbjct: 231 AKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNM 290 Query: 136 IEEND 140 I++ Sbjct: 291 IQQMK 295
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 44.3 bits (104), Expect = 4e-07 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 16/99 (16%) Query: 3 LEERIPIKVLFDRKDAAEWQKLNPVVDDGELVVELDTHRLKVGDGKLNYNDLPYYEGPQG 62 + E IP++V F R A EW + + ++ + E+ E DT K GDGK ++ L Y P Sbjct: 1 MTETIPLRVQFKRMTAEEWTRSDVILLESEIGFETDTGYAKFGDGKNQFSKLKYLNKP-- 58 Query: 63 ESITKVQLSENGDLSVWIGDKET--KLGNIKGQKGDKGT 99 DL + +ET K+ ++ K DK Sbjct: 59 ------------DLGAFAQKEETNSKITKLESSKADKNA 85
>MICOLLPTASE#Microbial collagenase metalloprotease (M9) signature. Length = 1104 Score = 29.3 bits (65), Expect = 0.036 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 123 TSDVVILADGVIEIIDLKYGKGMPVSANQNPQMGLYALGAYASYDMV--YDFDRIKMTII 180 + + ++ D +E+I+ ANQ + + G + D Y FD K + Sbjct: 850 SKKIKVVEDKPVEVINESEPNNDFEKANQIAKSNMLVKGTLSEEDYSDKYYFDVAKKGNV 909 Query: 181 QPRLDSVSSVDI 192 + L++++SV I Sbjct: 910 KITLNNLNSVGI 921
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 3e-08 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 2 KILLIDDHRLFAKSIQLLFQQYD-EVDVIDTITSHFNDVTIDLSKYDIILLDINLTNISK 60 IL+ DD + + +V + + + + D+++ D+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWI--AAGDGDLVVTDVVM---PD 59 Query: 61 ENGLEIAKELIQSTPHLKVVMLTGYVKSIYRERAKKVGAYGFVDKNIDPKQLISILKK 118 EN ++ + ++ P L V++++ + +A + GAY ++ K D +LI I+ + Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.8 bits (67), Expect = 0.006 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Query: 1 MKKKERHEKILDILKVDGFIKVKDIIDEM-----NISDMTARRDLDTLADKGLL-IRTHG 54 M K +RH KI +I+ + +++D + N++ T RD+ L L+ + T+ Sbjct: 1 MNKGQRHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKEL---HLVKVPTNN 57 Query: 55 GAQYLDYSSAKDEGHEKTHTEKKVL 79 G+ YS D+ K+ L Sbjct: 58 GSYK--YSLPADQRFNPLSKLKRSL 80
>60KDINNERMP#60kDa inner membrane protein signature. Length = 548 Score = 24.5 bits (53), Expect = 0.019 Identities = 8/17 (47%), Positives = 10/17 (58%) Query: 19 FFIFDMLFVSFHIWLEW 35 + +LFVSF IW W Sbjct: 7 LLVIALLFVSFMIWQAW 23
>PF04605#Virulence-associated protein D (VapD) Length = 125 Score = 29.8 bits (67), Expect = 0.008 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 227 INGYKVTSWNDLTEAV-DLATRD-LGPSQTIKVTYKSHQRLKTV 268 + ++ L E + DL +D + +Q+LK + Sbjct: 80 FDITEIGEQYSLKETIQDLCAKDFHQKLKEFTEKTPKNQKLKDL 123
>PF05272#Virulence-associated E family protein Length = 892 Score = 34.7 bits (79), Expect = 6e-04 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 34 IVFVGPSGCGKSTTLRMIAGLEDISEGELKIGGEVVNDKSPKDRDIAMVFQNYALY 89 +V G G GKST + + GL+ S+ IG +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIG---------TGKDSYEQIAGIVAY 645
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 7e-04 Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 243 ALWSEHGNLVQTAQRLYIHRNSLQYKLDKF 272 AL + GN ++ A L ++RN+L+ K+ + Sbjct: 444 ALTATRGNQIKAADLLGLNRNTLRKKIREL 473
>STREPKINASE#Streptococcus streptokinase protein signature. Length = 440 Score = 792 bits (2047), Expect = 0.0 Identities = 378/440 (85%), Positives = 401/440 (91%) Query: 1 MKNYLSFGMFALLFALTFGTVKPVQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQEIS 60 MKNYLSFGMFALLFALTFGTV VQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQ+IS Sbjct: 1 MKNYLSFGMFALLFALTFGTVNSVQAIAGPEWLLDRPSVNNSQLVVSVAGTVEGTNQDIS 60 Query: 61 LKFFEIDLTSRPAHGGKTEQGLSPKSKPFATNSSAMPHKLEKADLLKAIQEQLIANVHSN 120 LKFFEIDLTSRPAHGGKTEQGLSPKSKPFAT+S AM HKLEKADLLKAIQEQLIANVHSN Sbjct: 61 LKFFEIDLTSRPAHGGKTEQGLSPKSKPFATDSGAMSHKLEKADLLKAIQEQLIANVHSN 120 Query: 121 DGYFEVIDFASDATITDRNGKVYFADRDDSVTLPTQPVQEFLLSGHVRVRPYQPKAVHNS 180 D YFEVIDFASDATITDRNGKVYFAD+D SVTLPTQPVQEFLLSGHVRVRPY+ K + N Sbjct: 121 DDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPIQNQ 180 Query: 181 AERVNVNYEVSFVSETGNLDFTPSLKERYHLTTLAVGDSLSSQELAAIAQFILSKEHPDY 240 A+ V+V Y V F + DF P LK+ L TLA+GD+++SQEL A AQ IL+K HP Y Sbjct: 181 AKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGY 240 Query: 241 IITKRDSSIVTHDNDIFRTILPMDQEFTYHIKDREQAYKANSKTGIVEKTNNTDLISEKY 300 I +RDSSIVTHDNDIFRTILPMDQEFTY +K+REQAY+ N K+G+ E+ NNTDLISEKY Sbjct: 241 TIYERDSSIVTHDNDIFRTILPMDQEFTYRVKNREQAYRINKKSGLNEEINNTDLISEKY 300 Query: 301 YVLKKGEEPYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360 YVLKKGE+PYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAK Sbjct: 301 YVLKKGEKPYDPFDRSHLKLFTIKYVDVDTNELLKSEQLLTASERNLDFRDLYDPRDKAK 360 Query: 361 LLYNNLDAFGIMDYTLTGKVEDNHNDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEER 420 LLYNNLDAFGIMDYTLTGKVEDNH+DTNRIITVYMGKRPEGENASYHLAYDKDRYTEEER Sbjct: 361 LLYNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKRPEGENASYHLAYDKDRYTEEER 420 Query: 421 EVYSYLRYTGTPIPDNPKDK 440 EVYSYLRYTGTPIPDNP DK Sbjct: 421 EVYSYLRYTGTPIPDNPNDK 440
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 59.7 bits (144), Expect = 9e-12 Identities = 42/124 (33%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 305 EKAPEKSPEVTPTPEMPEQP---GEKAPEKSPEVTPTPEMPEQPGEKAPEKSKEVTPAPE 361 K E+S ++T + Q E K E+ + KA + Sbjct: 416 NKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEELAKLRAGKASDSQTPDAKPGN 475 Query: 362 KPADKEANQTPERRNGNMAKTPVANNHRRLPATGEQANPFFTAAAVAVMTTAGVLAVTKR 421 K + N K P+ R+LP+TGE ANPFFTAAA+ VM TAGV AV KR Sbjct: 476 KAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGETANPFFTAAALTVMATAGVAAVVKR 535 Query: 422 KENN 425 KE N Sbjct: 536 KEEN 539
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 33.7 bits (77), Expect = 0.001 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 38/155 (24%) Query: 8 RMRPKTISEVIGQKHLVGEGKIIRRMVE-----ANRLSSMILYGPPGIGKTSIASAIAGT 62 R K + LVG ++ + ++++ G G GK +A A+ Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 63 TRYAFRTF--------------------------NATIDSKKRLQEIAEEAKFSGGLVLL 96 + F A S R ++ + G L Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQ-------AEGGTLF 236 Query: 97 LDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPF 131 LDEI + Q LL +L+ G +G T Sbjct: 237 LDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRS 271
>PF05043#Transcriptional activator Length = 493 Score = 562 bits (1449), Expect = 0.0 Identities = 109/473 (23%), Positives = 217/473 (45%), Gaps = 20/473 (4%) Query: 34 ELSKALNISMLTLQTCLTNMQ-FMKEVGGITYKNGYITIWYHQHCGLQEVYQKALRHSQS 92 EL++ LN + ++ L++++ ++ + NG I ++ VY +HS Sbjct: 30 ELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINT-DDSDIEMVYHHFFKHSTH 88 Query: 93 FKLLETLFFRDFNSLEELAEELFVSISTLKRLIKKTNAYLTHTFGITILTSPVQVSGDEH 152 F +LE +FF + E + +E ++S S+L R+I + N + F + +PVQ+ G+E Sbjct: 89 FSILEFIFFNEGCQAESICKEFYISSSSLYRIISQINKVIKRQFQFEVSLTPVQIIGNER 148 Query: 153 QIRLFYLKYFSEAYKISEWPFGEMLNLKNCERLLSLMIKEVDVRVNFTLFQHLKILSSVN 212 IR F+ +YFSE Y EWPF E + + +LL L+ KE +N + + LK+L N Sbjct: 149 DIRYFFAQYFSEKYYFLEWPF-ENFSSEPLSQLLELVYKETSFPMNLSTHRMLKLLLVTN 207 Query: 213 LIRYYKGYSAVYDNKKTSHRFSQLIQSSLEIQDLSRLFYLKFGLYLDETTIAEMFSNHVN 272 L R G+ D + + + + I+ +++ F ++ + LDE + ++F ++ Sbjct: 208 LYRIKFGHFMEVDKDSFNDQSLDFLMQAEGIEGVAQSFESEYNISLDEEVVCQLFVSYFQ 267 Query: 273 DQLEIGYAF--DSIKQDSPTGCRKVTNWVHLL----DELEIRLNLSVTNKYEVAVILHNT 326 I + +K+DS V HLL D++ ++ + + NK + LHNT Sbjct: 268 KMFFIDESLFMKCVKKDS-----YVEKSYHLLSDFIDQISVKYQIEIENKDNLIWHLHNT 322 Query: 327 TVLKEEDITANYLFFDYKKSYLNFYKQEHPHLYKACVAGVEKLMRSEKEPISKELTNQLI 386 L +++ ++ FD K + + ++ P + + + + S + N L Sbjct: 323 AHLYRQELFTEFILFDQKGNTIRNFQNIFPKFVSDVKKELSHYLETLEVCSSSMMVNHLS 382 Query: 387 YAFFITWENSFLKVNQKDEKIRLLVI----ERSFNSVGNFLKKYIGEFFSITNFNELDAL 442 Y F ++ + + Q K+++LV+ + V L Y F + + EL+ Sbjct: 383 YTFITHTKHLVINLLQNQPKLKVLVMSNFDQYHAKFVAETLSYYCSNNFELEVWTELELS 442 Query: 443 TIDLEEIEKQYDVIVTDVMVGKSDELEIFFFYKMIPEAIIDKLNAFLNISFAD 495 LE + YD+I+++ ++ + + + + ++I LNA + I + Sbjct: 443 KESLE--DSPYDIIISNFIIPPIENKRLIYSNNINTVSLIYLLNAMMFIRLDE 493
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.8 bits (77), Expect = 0.001 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 7/96 (7%) Query: 107 VTKQPDSSDQSTPS------PKDQSSQKESQNKDGRPTPSPDQQKDQTPDKTPEKSADKT 160 V + + + P P D ++ P P+ + + P+ E Sbjct: 37 VHQVIELPAPAQPISVTMVAPADLE-PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 95 Query: 161 PEKGPEKATEKTPEPNRDAPKPIQPPLAAAAPVFAP 196 K K K + + ++P + A F Sbjct: 96 KPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFEN 131 Score = 33.8 bits (77), Expect = 0.001 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 139 PSPDQQKD---QTPDKTPEK---SADKTPEKGPEKATEKTPEPNRDAPKPIQPPLAAAAP 192 P+P Q P P PE E PEP ++AP I+ P P Sbjct: 44 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 103 Query: 193 VFAPWRESDKDLSKLKPSSRSSAA 216 P ++ ++ +KP A+ Sbjct: 104 KPKPVKKVEQPKRDVKPVESRPAS 127
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 32.1 bits (73), Expect = 0.002 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Query: 10 VINGLIIVVVTSILLVLYFAMPIYYTKVKDKEVKREFDQTSKQIKGKTVTEIRDILTKKI 69 V + LI+ ++ A+ + + KE +K+ +TEIRD+L ++ Sbjct: 82 VFDFLIVA------FAIFMAIKLINKLNRKKEEPAAAPAPTKEEV--LLTEIRDLLKEQN 133 Query: 70 NK 71 N+ Sbjct: 134 NR 135
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 83.0 bits (205), Expect = 1e-20 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 1/128 (0%) Query: 3 KILVVEDDDTISQVICEFLKANNYDPDCVFDGQAALDKWQTTSYDLIILDIMLPSLSGLE 62 ILV +DD I V+ + L YD + DL++ D+++P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 63 VLKTIRKT-SDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVLRVSTP 121 +L I+K D+P+++++A + T + + DY+ KPF LI I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 DEKRQIGD 129 + D Sbjct: 125 RPSKLEDD 132
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 54.4 bits (131), Expect = 4e-10 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 60 DISLTLAGEVTANNSSKVKIDSSKGEVKDVFVKKGDVVKVGQPLFSYETSQRLTAQSSEF 119 +I T G++T + SK VK++ VK+G+ V+ G L +LTA +E Sbjct: 81 EIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLL------KLTALGAEA 134 Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESLLEQIRSAEDSVSQAL 179 D + Q + A L+ Y I K PDE + + E +L Sbjct: 135 DTL----KTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190 Query: 180 SDAKTADSDVKTAQIELDKANATA 203 + + + Q EL+ A Sbjct: 191 IKEQFSTWQNQKYQKELNLDKKRA 214 Score = 39.4 bits (92), Expect = 2e-05 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 16/180 (8%) Query: 120 DVQTKANQLQVAKTNAALKWETYNRKVNEINTLKSRYNTAPDESL---LEQIRSAEDSVS 176 D + ++ +AK + Y VNE+ KS+ E L E + + Sbjct: 239 DFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKN 298 Query: 177 QALSDAKTADSDVKTAQIELDKANATATMEKGKLEYDTVKSDTAGTIVSLNTDLPNQSKS 236 + L + ++ +EL K + + +++ + + L Sbjct: 299 EILDKLRQTTDNIGLLTLELAKNEE-------RQQASVIRAPVSVKVQQLKVHTEGGVV- 350 Query: 237 KKENETFMEII-DKSKMLVKGNISEFDRDKLKIGQKVEV-IDRKDNSK--KWTGKVTQVG 292 ET M I+ + + V + D + +GQ + ++ ++ GKV + Sbjct: 351 -TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNIN 409
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 45.4 bits (107), Expect = 6e-07 Identities = 48/262 (18%), Positives = 80/262 (30%), Gaps = 13/262 (4%) Query: 361 KPAEDERSSQATEPANPSKENSSTDASQGSHDSENPATDSPSQPQASDQGNHQSQVPNAK 420 + QA P+ PS + PAT S + ++ +S+ Sbjct: 995 TNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKN 1054 Query: 421 PQTDKTDTP-NAPVPPQNTPNAPAIPQDTPKVPEAGGQSGPAGNAEEKAPDSGPKESGQ- 478 Q T N V + N A Q T +V ++G ++ E K + KE Sbjct: 1055 EQDATETTAQNREVAKEAKSNVKANTQ-TNEVAQSGSETKETQTTETKETATVEKEEKAK 1113 Query: 479 ---SSSKESPSVGEDTTPNQPDVLVGGQREPIDITEDTITDAPPTVSGHNASTQPQSVVE 535 ++E P V +P Q Q E + + + PTV+ +Q + + Sbjct: 1114 VETEKTQEVPKVTSQVSPKQE------QSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167 Query: 536 DTAPQRPDVLVGGQSEPIDITQDTQPGMSGSNDATVINEDTKPKRVFHFDNKEPQASEKA 595 P + Q T +T + N T+P NK ++ Sbjct: 1168 TEQPAKETSSNVEQPVTESTTVNTGNSVV-ENPENTTPATTQPTVNSESSNKPKNRHRRS 1226 Query: 596 AEQKLAPHDSHTTPQTSDDTAA 617 + TT T A Sbjct: 1227 VRSVPHNVEPATTSSNDRSTVA 1248 Score = 35.0 bits (80), Expect = 0.001 Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 8/162 (4%) Query: 293 LSEEAPNLRTAKEKVKTLKGILHDYYVDIKEPEKAKKYRVEDETLPSQPEAPAKPEAPAP 352 E +T + K V+ ++ ++ K + Q E PA Sbjct: 1088 SGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAR 1147 Query: 353 SPSP--------APGQKPAEDERSSQATEPANPSKENSSTDASQGSHDSENPATDSPSQP 404 P + A+ E+ ++ T ST + G+ ENP +P+ Sbjct: 1148 ENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATT 1207 Query: 405 QASDQGNHQSQVPNAKPQTDKTDTPNAPVPPQNTPNAPAIPQ 446 Q + ++ N ++ ++ N ++ + + Sbjct: 1208 QPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVAL 1249 Score = 33.9 bits (77), Expect = 0.002 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 31/217 (14%) Query: 322 KEPEKAKKYRVEDETLPSQPEAPAKPEAPAPSPSPAPGQKPAEDERSSQATEP-ANPSKE 380 K + ET + E AK E P + + + S+ +P A P++E Sbjct: 1089 GSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE 1148 Query: 381 NSSTDASQGSHDSENPATDSPSQPQASDQGNHQSQVPNAKPQTDKTDTPNAPVPPQNTPN 440 N T + + ++ + Q + + + + P + T T + P+NT Sbjct: 1149 NDPTVNIK---EPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNT-GNSVVENPENTTP 1204 Query: 441 APAIPQDTPKVPEAGGQSGPAGNAEEKAPDSGPKESGQSSSKESPSVGEDTTPNQPDVLV 500 A P + PK + S + P E T + D Sbjct: 1205 ATTQPTVNSESSNK------------------PKNRHRRSVRSVPHNVEPATTSSNDRST 1246 Query: 501 GGQREPIDITEDTITDAPPTVSGHNASTQPQSVVEDT 537 + + + +A + Q V + Sbjct: 1247 VALCDLTSTNTNAVLS--------DARAKAQFVALNV 1275
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 35.8 bits (82), Expect = 1e-04 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 12/89 (13%) Query: 191 IEEDTKPKRFFHFDN-EPQAPEKPKEQPSNSLPQ----------APVYKAAHHLPASGDK 239 EE K + D+ P A K P AP+ + LP++G+ Sbjct: 452 AEELAKLRAGKASDSQTPDAKPGNKAVPGKGQAPQAGTKPNQNKAPMKETKRQLPSTGET 511 Query: 240 REASFTIVALTIIGAAGLLSKKRRDTEEN 268 FT ALT++ AG+ + +R EEN Sbjct: 512 ANPFFTAAALTVMATAGVAAVVKR-KEEN 539
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 32.0 bits (72), Expect = 0.013 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 6/145 (4%) Query: 24 APTVLGQEVSNTEASASSTASVDATASGTTASGASSEATVATTNGGSQSTQVAAETTPQP 83 PTV +E + + + T S + TV T N ++ + T QP Sbjct: 1150 DPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQP 1209 Query: 84 QVQTSEQPAATSTSLASSTSSSEDKAPKAASTKSSSA-----TVASSSNGSNQGAGTEVE 138 V + + S S + P S+ S ++++N A + + Sbjct: 1210 TVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQ 1269 Query: 139 PQMMDVEQYKVNKEKTELTVKDDNQ 163 ++V + V++ ++L + ++ Q Sbjct: 1270 FVALNVGKA-VSQHISQLEMNNEGQ 1293
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 59.3 bits (143), Expect = 6e-14 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%) Query: 2 EMHFVRTEPEARRIAETFCAENTQTKTPMRVQQLSYPSDTDHSGGEL-----YIYALSPA 56 + +F R E EA+ A TF ++ K R + D + GGEL Y+Y +S Sbjct: 28 DQNFARNEKEAKDSAITFIQKSAAIKAGARSAE-DIKLDKVNLGGELSGSNMYVYNISTG 86 Query: 57 GFIIVSGDTRAHTILGYSFDNNLDLN-HDNVRSMVEAYQKQI 97 GF+IVSGD R+ ILGYS + D N +N+ S +E+Y +QI Sbjct: 87 GFVIVSGDKRSPEILGYSTSGSFDANGKENIASFMESYVEQI 128
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 710 bits (1833), Expect = 0.0 Identities = 396/398 (99%), Positives = 397/398 (99%) Query: 1 MNKKKLGIRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE 60 MNKKKLG+RLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE Sbjct: 1 MNKKKLGVRLLSLLALGGFVLANPVFADQNFARNEKEAKDSAITFIQKSAAIKAGARSAE 60 Query: 61 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF 120 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF Sbjct: 61 DIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKRSPEILGYSTSGSFDANGKENIASF 120 Query: 121 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 180 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE Sbjct: 121 MESYVEQIKENKKLDTTYAGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 180 Query: 181 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY 240 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY Sbjct: 181 QSFVGQHAATGCVATATAQIMKYHNYPNKGLKDYTYTLSSNNPYFNHPKNLFAAISTRQY 240 Query: 241 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ 300 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ Sbjct: 241 NWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQ 300 Query: 301 SVHQINRSDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG 360 SVHQINR DFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG Sbjct: 301 SVHQINRGDFSKQDWEAQIDKELSQNQPVYYQGVGKVGGHAFVIDGADGRNFYHVNWGWG 360 Query: 361 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP 398 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP Sbjct: 361 GVSDGFFRLDALNPSALGTGGGAGGFNGYQSAVVGIKP 398
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 30.0 bits (67), Expect = 0.021 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 22/145 (15%) Query: 242 GGQVMETVGIENMIGTLYT--EGPKLMAEVEAHTKSYDVDIIKAQLATSIEKKENIEVTL 299 G M+ G+E +GTL E P + A + + + +DI+K K++ + T Sbjct: 205 NGSAMQIRGVEKALGTLKITHENPNVEANYDENAAALSIDIVK--------KQKGGKGTA 256 Query: 300 ANGAVLQAKTAILALGAKWRNINVPGEDEFRNKGVTYCPHCDGPLFEGKDVAVIGGGNSG 359 A G + + + + RN+ +D+F K DG + K + GN Sbjct: 257 AQGIYINSTSGTTGKLLRIRNLG---DDKFYVKH-------DGGFYAKKTSQI--DGNLK 304 Query: 360 LEAALDLAGLAKHVYVLEFLPELKA 384 L+ A YV + +LKA Sbjct: 305 LKNPTADDHAATKAYVDSEVKKLKA 329
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 47.4 bits (113), Expect = 7e-08 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%) Query: 46 IAIKDGLIVALG-SGEPDAE-----LVGPQTIMRSYKGKIATPGIIDCHTHLV 92 I +KDG I A+G +G PD + +VGP T + + +GKI T G +D H H + Sbjct: 88 IGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVTAGGMDSHIHFI 140
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 43.9 bits (103), Expect = 2e-06 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 20/221 (9%) Query: 64 ETIQEAKATIDAVEKTLSQQKAELTELATALTKTTAEINHLKEQQDNEQKALTSAQEIYT 123 + K D + + LS K +L + +L++ ++I L+ ++ + +KAL A T Sbjct: 78 FNNKALKDHNDELTEELSNAKEKLRKNDKSLSEKASKIQELEARKADLEKALEGAMNFST 137 Query: 124 NTLASSE--------------------ETLLAQGAEHQRELTATETELHNAQADQHSKET 163 A + E + ++ E E +A Q E Sbjct: 138 ADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEK 197 Query: 164 ALSEQKASISAETTRAQDLVEQVKTSEQNIAKLNAMISNPDAITKAAQTANDNTKALSSE 223 AL +A++ + + L + A L + + A +A + Sbjct: 198 ALEGAMNFSTADSAKIKTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAA 257 Query: 224 LEKAKADLENQKAKVKKQLTEELAAQKAALAEKEAELSRLK 264 LE +A+LE T + A K AEK A + Sbjct: 258 LEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALEAEKA 298 Score = 40.4 bits (94), Expect = 3e-05 Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 6/207 (2%) Query: 64 ETIQEAKATIDAVEKTLSQQKAELTELATALTKTTAEINHLKEQQDNEQKALTSAQEIYT 123 E A KTL +KA L L K + + K L + + Sbjct: 165 EGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIKTLEAEKAALA 224 Query: 124 NTLASSEETLLAQGAE---HQRELTATETELHNAQADQHSKETALSEQKASISAETTRAQ 180 A E+ L ++ E E +A Q E AL +A++ + + Sbjct: 225 ARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKIK 284 Query: 181 DLVEQVKTSEQNIAKLNAMISNPDAITKAAQTANDNTKALSSELEKAKADLENQKA---K 237 L + E A L +A ++ + D ++ +LE LE Q Sbjct: 285 TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEA 344 Query: 238 VKKQLTEELAAQKAALAEKEAELSRLK 264 ++ L +L A + A + EAE +L+ Sbjct: 345 SRQSLRRDLDASREAKKQLEAEHQKLE 371 Score = 37.7 bits (87), Expect = 2e-04 Identities = 62/310 (20%), Positives = 113/310 (36%), Gaps = 46/310 (14%) Query: 5 ERMDLEQTKPNQVKQKIALTSTIALLSASVGVSHQVKADDRASGETKASNTHDDSLPKPE 64 + DLE+ + A ++ I L A + + + A N K + Sbjct: 156 RKADLEKALEGAMNFSTADSAKIKTLEAEKAAL-EARQAELEKALEGAMNFSTADSAKIK 214 Query: 65 TIQEAKATIDAVEKTLSQQKAELTELATALTKTTAEINHLKEQQDNEQKALTSAQEIYTN 124 T++ KA + A + L + +TA + + K + Q L A E N Sbjct: 215 TLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMN 274 Query: 125 TLASSE---ETLLAQGAEHQRELTATETELHNAQADQHSKETALS--------------- 166 + +TL A+ A + E E + A++ S L Sbjct: 275 FSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQK 334 Query: 167 -----------------------EQKASISAETTRAQDLVEQVKTSEQNI-AKLNAMISN 202 E K + AE + ++ + + S Q++ L+A Sbjct: 335 LEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDASREA 394 Query: 203 PDAITKAAQTAN---DNTKALSSELEKAKADLENQKAKVKKQLTEELAAQKAALAEKEAE 259 + KA + AN + L+ ELE++K E +KA+++ +L E A K LA++ E Sbjct: 395 KKQVEKALEEANSKLAALEKLNKELEESKKLTEKEKAELQAKLEAEAKALKEKLAKQAEE 454 Query: 260 LSRLKSSAPS 269 L++L++ S Sbjct: 455 LAKLRAGKAS 464
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 109 bits (274), Expect = 2e-31 Identities = 29/63 (46%), Positives = 41/63 (65%) Query: 9 KTRNIGIMAHVDAGKTTTTERILYYTGKIHKIGETHEGASQMDWMEQEQERGITITSAAT 68 K NIG++AHVDAGKTT TE +LY +G I ++G +G ++ D E++RGITI + T Sbjct: 2 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGIT 61 Query: 69 QLN 71 Sbjct: 62 SFQ 64
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 485 bits (1249), Expect = e-167 Identities = 142/594 (23%), Positives = 244/594 (41%), Gaps = 65/594 (10%) Query: 1 MDFTIEVQRSLRVLDGAVTVLDSQSGVEPQTETVWRQATEYGVPRIVFANKMDKIGADFL 60 MDF EV RSL VLDGA+ ++ ++ GV+ QT ++ + G+P I F NK+D+ G D Sbjct: 79 MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLS 138 Query: 61 YSVQTLHDRLQANAHPIQLPIGAEDDFRGIIDLIKMKAEIYTNDLGTDILEEDIPEEYLE 120 Q + ++L A +IK K E+Y N T+ E + Sbjct: 139 TVYQDIKEKLSAEI------------------VIKQKVELYPNMCVTNFTESE------- 173 Query: 121 QAQEYREKLIEAVAETDEDLMMKYLEGEEITNDELIAGIRKATINVEFFPVLCGSAFKNK 180 + V E ++DL+ KY+ G+ + EL N FPV GSA N Sbjct: 174 --------QWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNNI 225 Query: 181 GVQLMLDAVIAYLPSPLDIPAIKGVNPDTDAEEERPASDEEPFAALAFKIMTDPFVGRLT 240 G+ +++ + S + FKI RL Sbjct: 226 GIDNLIEVITNKFYSSTH-------------------RGQSELCGKVFKIEYSEKRQRLA 266 Query: 241 FFRVYSGVLNSGSYVMNTSKGKRERIGRILQMHANSRQEIETVYAGDIAAAVG----LKD 296 + R+YSGVL+ V + K K +I + +I+ Y+G+I L Sbjct: 267 YIRLYSGVLHLRDSVRISEKEK-IKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNS 325 Query: 297 TTTGDSLTDEKAKVILESIEVPEPVIQLMVEPKSKADQDKMGVALQKLAEEDPTFRVETN 356 GD+ + E IE P P++Q VEP ++ + AL ++++ DP R + Sbjct: 326 VL-GDTKLLPQR----ERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVD 380 Query: 357 VETGETVIAGMGELHLDVLVDRMKREFKVEANVGAPQVSYRETFRASTQARGFFKRQSGG 416 T E +++ +G++ ++V ++ ++ VE + P V Y E R +A + Sbjct: 381 SATHEIILSFLGKVQMEVTCALLQEKYHVEIEIKEPTVIYME--RPLKKAEYTIHIEVPP 438 Query: 417 KGQFGDVWIEFTPNEEGKGFEFENAIVGGVVPREFIPAVEKGLIESMANGVLAGYPMVDV 476 + + + +P G G ++E+++ G + + F AV +G+ G L G+ + D Sbjct: 439 NPFWASIGLSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDC 497 Query: 477 KAKLYDGSYHDVDSSETAFKIAASLALKEAAKSAQPAILEPMMLVTITAPEDNLGDVMGH 536 K G Y+ S+ F++ A + L++ K A +LEP + I AP++ L Sbjct: 498 KICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYTD 557 Query: 537 VTARRGRVDGMEAHGNSQIVRAYVPLAEMFGYATVLRSATQGRGTFMMVFDHYE 590 + + N I+ +P + Y + L T GR + Y Sbjct: 558 APKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYH 611
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 27.4 bits (61), Expect = 0.024 Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 163 MTLLISMVGTITGLFIGLLIGIFRTAPKAKHKVAALGQKLFGWLLTIYI 211 + L++S TI IGLL+G+F+T + + + G KL G L +++ Sbjct: 14 LVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62
>cloacin#Cloacin signature. Length = 551 Score = 31.6 bits (71), Expect = 0.010 Identities = 13/21 (61%), Positives = 13/21 (61%) Query: 619 SGGGISGGGGFSGGGGGGGGG 639 SG G GG G SGGG G GG Sbjct: 60 SGHGNGGGNGNSGGGSGTGGN 80
>INTIMIN#Intimin signature. Length = 939 Score = 27.0 bits (59), Expect = 0.043 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 3 GLKKISKEKMLPIGFPERFFEEGKLQN-NVS----FSRQHVLRGLHAEPWDKYISVADDG 57 G + I +G +RFF + NV FS + G+ E W Y + +G Sbjct: 247 GARYIDSRFTANLGAGQRFFLPENMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNG 306
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 132 bits (334), Expect = 4e-38 Identities = 74/344 (21%), Positives = 136/344 (39%), Gaps = 44/344 (12%) Query: 4 NIIVTGGAGFIGSNFVHY-VYNNHPDVHVTVLDKLT--YAGN--RANIEAILGDRVELVV 58 +VTG AGFIG + + H V +D L Y + +A +E + + Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGH---QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHK 58 Query: 59 GDIADAELVDKLAA--KTDAIVHYAAESHNDNSLEDPSPFIHTNFIGTYTLLEAARKYDI 116 D+AD E + L A + + SLE+P + +N G +LE R I Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKI 118 Query: 117 RFHHV--STDEVYGDLPLREDLPGQGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWV 174 + H + S+ VYG L +P + + +P S Y++TK A++L+ + Sbjct: 119 Q-HLLYASSSSVYG---LNRKMPFSTDDSVD--------HPVSLYAATKKANELMAHTYS 166 Query: 175 RSFGVKATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGEGKNVRDWIHTNDHSIG 234 +G+ AT YGP+ + + + +L G +Y GK RD+ + +D + Sbjct: 167 HLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEA 226 Query: 235 VWAIL------------------TKGRIGETYLIGADGEKNNKEVLELILEKMGQPKDAY 276 + + Y IG + ++ + + +G Sbjct: 227 IIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKK- 285 Query: 277 DHVTDRAGHDLRYAIDSTKLREELGWEPQFTNFSEGLEETIKWY 320 + + + G L + D+ L E +G+ P+ T +G++ + WY Sbjct: 286 NMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNWY 328
>ANTHRAXTOXNA#Anthrax toxin LF subunit signature. Length = 800 Score = 29.3 bits (65), Expect = 0.031 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 20/178 (11%) Query: 31 KALKEDDADSLIALGEYLESIGFLPHAKRIYLQLADDYPELNINLAQIAAEDDAIEEAF- 89 + L E++ +S+ + GE + P A R + + P+L IN+ A + +E + Sbjct: 118 QDLSEEEKNSMNSRGEKV------PFASRFVFEKKRETPKLIINIKDYAINSEQSKEVYY 171 Query: 90 -----LYLDKVSKDS---PNYLSALLVMADLYDMEGLTEVAREKLLQAVSISPEPLVIFG 141 + LD +SKD P +L+ + ++D D + + +K + + ++ + + I Sbjct: 172 EIGKGISLDIISKDKSLDPEFLNLIKSLSD--DSDSSDLLFSQKFKEKLELNNKSIDINF 229 Query: 142 LAEIDMSLQY-FKEAIDYYAQLDNRQILELTGISTYQRIGRAYASLGKFEAAIEFLEK 198 + E Q+ F A YY D+R +LEL ++ + + G FE E L+K Sbjct: 230 IKENLTEFQHAFSLAFSYYFAPDHRTVLELYAPDMFEYMNK--LEKGGFEKISESLKK 285
>FbpA_PF05833#Fibronectin-binding protein Length = 577 Score = 707 bits (1826), Expect = 0.0 Identities = 196/577 (33%), Positives = 325/577 (56%), Gaps = 32/577 (5%) Query: 15 MSFDGFFLHHLTNELKENLLYGRIQKVNQPFERELVLTIRNHRKNYKLLLSAHPVFGRVQ 74 M+ DG FL+ + +ELK ++ G+I KVNQP + E++L IR R ++KLL+S+ + R+ Sbjct: 1 MALDGIFLYSIIDELKNTIINGKIDKVNQPEKDEIILNIRKGRLSFKLLISSSSNYPRIH 60 Query: 75 ITQADFQNPQVPNTFTMIMRKYLQGAVIEQLEQIDNDRIIEIKVSNKNEIGDAIQATLII 134 +T NP F M++RKY+ A I + QI+ DRI+ I + +E+G +LII Sbjct: 61 LTDLTKPNPIKAPMFCMVLRKYISNAKIVDIHQINQDRIVVIDFESTDELGFNSIYSLII 120 Query: 135 EIMGKHSNIILVDRAENKIIESIKHVGFSQNSYRTILPGSTYIEPPKTAAVNPFTITD-- 192 EIMG+HSN+ L+ + +N I++SIKH+ N+YR+I PG Y+ PPK+ +NPF + Sbjct: 121 EIMGRHSNMTLIRKRDNIIMDSIKHITPDINTYRSIYPGIEYVYPPKSPKLNPFDFSYDM 180 Query: 193 VPLFEILQTQELTVKSLQQHFQGLGRDTAKELAELLTTDKLKR---------------FR 237 + F + +L + F G+ + + E+ L + + F+ Sbjct: 181 IENFTKENSLQLNDNIFSKIFTGVSKTLSSEICFRLKNNSIDLSLSNLKEIVEVCKDLFK 240 Query: 238 EFFARPTQANLTTASFEPVLF---------SDSHATFETLSEMLDHFYQDKAERDRINQQ 288 E + + N T + V F +++ S++L++FY K + DR+ + Sbjct: 241 EIQSNKFEFNCYTKNNSFVGFYCLNLMSKEDYKKIQYDSSSKLLENFYYAKDKSDRLKSK 300 Query: 289 ASDLIHRVQTELDKNRNKLSKQEAELLATENAELFRQKGELLTTYLSLVPNNQDSVILDN 348 +SDL V +++ K L E+ ++F+ GELLT + + + L N Sbjct: 301 SSDLQKIVMNNINRCTKKDKILNNTLKKCEDKDIFKLYGELLTANIYALKKGLSHIELAN 360 Query: 349 YYT--GEKIEIALDKALTPNQNAQRYFKKYQKLKEAVKHLSGLIADTKQSITYFESVDYN 406 YY+ + ++I LD+ TP+QN Q Y+KKY KLK++ + + + ++ + Y SV N Sbjct: 361 YYSENYDTVKITLDENKTPSQNVQSYYKKYNKLKKSEEAANEQLLQNEEELNYLYSVLTN 420 Query: 407 LSQA-SIDDIEDIREELYQAGFLKSRQ--RDKRHKRKKPEQYLASDGKTILMVGRNNLQN 463 ++ A + D+IE+I++EL + G++K ++ + K+ K KP +++ DG I VG+NN+QN Sbjct: 421 INNADNYDEIEEIKKELIETGYIKFKKIYKSKKSKTSKPMHFISKDGIDIY-VGKNNIQN 479 Query: 464 EELTFKMAKKGELWFHAKDIPGSHVIIKDNLDPSDEVKTDAAELAAYYSKARLSNLVQVD 523 + LT K A K ++WFH K+IPGSHVI+K+ +D + +AA LAAYYSK++ S+ V VD Sbjct: 480 DYLTLKFANKHDIWFHTKNIPGSHVIVKNIMDIPESTLLEAANLAAYYSKSQNSSNVPVD 539 Query: 524 MIEAKKLHKPSGAKPGFVTYTGQKTLRVTPDQAKILS 560 E K + KP+GAKPG V Y+ +T+ VTP + + Sbjct: 540 YTEVKNVKKPNGAKPGMVIYSTNQTIYVTPTNPNLKN 576
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 47.4 bits (113), Expect = 5e-08 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 16/191 (8%) Query: 170 RKTVERAGIKVENIIISPLAMAKTILNEGEREFGATVIDMGGGQTTVASMRAQELQYTNI 229 R++ + AG + +I P+A A G+ V+D+GGG T VA + + Y++ Sbjct: 127 RESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSS 186 Query: 230 YAEGGEYITKDISKVLKTSLAI------AEALKFNFGQAEISEASITETVK-VDVV-GSE 281 GG+ + I ++ + AE +K G A + V+ ++ G Sbjct: 187 VRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVP 246 Query: 282 EPVEVTERYLSEIISARIRHILDRVKQDLER------GRLLDLPGGIVLIGGGAIMPGVV 335 + + E + + I+ V LE+ + + G+VL GGGA++ + Sbjct: 247 RGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISE--RGMVLTGGGALLRNLD 304 Query: 336 EIAQEIFGVTV 346 + E G+ V Sbjct: 305 RLLMEETGIPV 315
>LIPPROTEIN48#Mycoplasma P48 major surface lipoprotein signature. Length = 428 Score = 30.7 bits (69), Expect = 0.010 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%) Query: 154 FEQEDQLSKVKHLGAVTKVFKDANQMPESTQLE-AVKEYFSRDLKTLLFIGGSAGAHVFN 212 FE ++K + + N + S+ E A S K + G Sbjct: 83 FEALKAINKQTGI--------EINNVEPSSNFESAYNSALSAGHKIWVLNGFKHQQS-IK 133 Query: 213 QFISDHPELKQRYNIINITGDPHLNELSSHLYRVDYVTD 251 Q+I H E +R I I D + Y + + Sbjct: 134 QYIDAHREELERNQIKIIGIDFDIETEYKWFYSLQFNIK 172
>ARGDEIMINASE#Bacterial arginine deiminase signature. Length = 409 Score = 578 bits (1492), Expect = 0.0 Identities = 191/410 (46%), Positives = 276/410 (67%), Gaps = 9/410 (2%) Query: 5 TPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDE 64 PI+++SEIG+LKKVLLHRPG+E+ENL P ++ LFDDIP+LE A++EH+ FA L++ Sbjct: 6 NPINIFSEIGRLKKVLLHRPGEELENLTPFIMKNFLFDDIPYLEVARQEHEVFASILKNN 65 Query: 65 GIEVLYLETLAAESLVTP-EIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEK 123 +E+ Y+E L +E LV+ + FI +++ EA I+ T +++ ++ +I K Sbjct: 66 LVEIEYIEDLISEVLVSSVALENKFISQFILEAEIKTDFTINLLKDYFSSL-TIDNMISK 124 Query: 124 TMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSE 183 ++GV EL +S L DLV F IDPMPN+ FTRDPFA+IG GV++N MF++ Sbjct: 125 MISGVVTEELKNYTSS---LDDLVNGANLFIIDPMPNVLFTRDPFASIGNGVTINKMFTK 181 Query: 184 TRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAA 243 R RET++ +YIF +HP+Y VP+ +R E +EGGDELVL+K +L +GIS+RT+A Sbjct: 182 VRQRETIFAEYIFKYHPVYKE-NVPIWLNRWEEASLEGGDELVLNKGLLVIGISERTEAK 240 Query: 244 SIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSV 303 S+EKL +++FK F +LAF+ NR +MHLDTVFT +DY FT + +Y + Sbjct: 241 SVEKLAISLFKNKTSFDTILAFQIPKNRSYMHLDTVFTQIDYSVFTSFTSDDMYFSIYVL 300 Query: 304 TYDNE--ELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAP 361 TY+ ++HI +EK + ++L+ LG K+D+I+C G +L+ REQWNDG+N L IAP Sbjct: 301 TYNPSSSKIHIKKEKARIKDVLSFYLG-RKIDIIKCAGGDLIHGAREQWNDGANVLAIAP 359 Query: 362 GVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411 G ++ Y+RN +TN + E G+K+ +I SEL RGRGGPRCMSMP REDI Sbjct: 360 GEIIAYSRNHVTNKLFEENGIKVHRIPSSELSRGRGGPRCMSMPLIREDI 409
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 123 bits (311), Expect = 4e-39 Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%) Query: 1 MNKKETRHQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDT 60 MNK + RH IR +I+ I TQ EL + L+K+G +TQAT+SRD+KEL+LVKV + N + Sbjct: 1 MNKGQ-RHIKIREIITANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNGS 59 Query: 61 HYEALAISQTRWEH-RLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIV 119 + +L Q +L+ + DA V + H I+LKT+PG AQ+ G+++D + EI+ Sbjct: 60 YKYSLPADQRFNPLSKLKRSLMDAFVKIDSASHLIVLKTMPGNAQAIGALMDNLDWEEIM 119 Query: 120 ATVCGDDTCLIVCEDNEQAKACYETL 145 T+CGDDT LI+C ++ K + + Sbjct: 120 GTICGDDTILIICRTHDDTKVVQKKI 145
>PF06580#Sensor histidine kinase Length = 349 Score = 183 bits (466), Expect = 6e-55 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 9/198 (4%) Query: 362 EKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGN- 420 + +L AL +QINPHF++N L+ I + D + E+ SL++ R +L N Sbjct: 155 ASMAQEAQLMALKAQINPHFMFNALNNIRALIL-EDPTKAREMLTSLSELMRYSLRYSNA 213 Query: 421 EYIRLADELDHVSQYLFIQKQRYGDKLSYEVQGLDVYADFVIPKLILQPLVENAIYHGIK 480 + LADEL V YL + ++ D+L +E Q D +P +++Q LVEN I HGI Sbjct: 214 RQVSLADELTVVDSYLQLASIQFEDRLQFENQINPAIMDVQVPPMLVQTLVENGIKHGIA 273 Query: 481 EVDRKGMIKVTVSDTAQHLVLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHY 540 ++ + G I + + + L V + G ++ ++ G GL+NV +RL++ Y Sbjct: 274 QLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTKEST-------GTGLQNVRERLQMLY 326 Query: 541 GEGYHMTIHSQSDQFTEI 558 G + + + + + Sbjct: 327 GTEAQIKLSEKQGKVNAM 344
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 2e-24 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%) Query: 3 SLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLN 62 ++L+ +D+ +R + + + + V N W D+V+TD+ MP N Sbjct: 5 TILVADDDAAIRTVLNQALSRAGY---DVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 63 GIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKK 122 L IK+ P ++ ++ + F A+ A + GA DYL KPF D+ +++G + + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPF---DLTELIGIIGRA 118 Query: 123 LELSKKTETIQELVEQPQKEVSAIAMAIHE------RLADSDLTL 161 L K+ + E Q + + A+ E RL +DLTL Sbjct: 119 LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTL 163
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 28.6 bits (64), Expect = 0.036 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 264 LASVATSIVGVVSFLGL---IVPHMSRLLVGSKHQILIPFSALLGAFVFLLADTLGRSLA 320 + S A + +GL H S+L++ Q +PFS L V + L Sbjct: 29 VVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFF-YLC 87 Query: 321 YPLEISPAIIMSIVGG 336 +PL ++ A +M+I Sbjct: 88 FPL-LTVAALMAIASH 102
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 70.4 bits (172), Expect = 4e-16 Identities = 55/265 (20%), Positives = 104/265 (39%), Gaps = 24/265 (9%) Query: 27 VACVNQHPKTAKETEQQRIVATSVAVVDICDRLNLDLVGVCDSKLYTL----PKRYDAVK 82 + A + RIVA V++ L + GV D+ Y L P D+V Sbjct: 20 PLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVI 79 Query: 83 RVGLPMNPDIELIASLKPTWILSPNSLQEDLEPKYQKLDTEYGFLNLRSVEG------MY 136 VGL P++EL+ +KP++++ P + L +G Sbjct: 80 DVGLRTEPNLELLTEMKPSFMV----WSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMAR 135 Query: 137 QSIDDLGNLFQRQQEAKELRQQYQDYYRAFQAKRKGK-KKPKVLILMGLPGSYLVATNQS 195 +S+ ++ +L Q A+ QY+D+ R+ + + + +P +L + P LV S Sbjct: 136 KSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNS 195 Query: 196 YVGNLLDLAGGENVYQ--SDEKEFLSVNPEDMLA-KEPDLILRTAHAIPDKVKVMFDKEF 252 +LD G N +Q ++ +V+ + + A K+ D++ D +M Sbjct: 196 LFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALM----- 250 Query: 253 AENDIWKHFTAVKEGKVYDLDNTLF 277 +W+ V+ G+ + F Sbjct: 251 -ATPLWQAMPFVRAGRFQRVPAVWF 274
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 30.3 bits (68), Expect = 0.014 Identities = 14/42 (33%), Positives = 17/42 (40%) Query: 117 KPTDHSKPTDQPKPTDQPKPSPSKVDTAPASSLSRQLPEVRT 158 KP KP K +QPK V++ PAS P T Sbjct: 93 KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLT 134
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 343 bits (882), Expect = e-119 Identities = 121/368 (32%), Positives = 194/368 (52%), Gaps = 23/368 (6%) Query: 7 RPTVARVNLQAIKENVASVQKHIPLGVKTYAVVKADAYGHGAVQVSKALLPQVDGYCVSN 66 RP A ++LQA+K+N++ V++ + ++VVKA+AYGHG ++ A+ DG+ + N Sbjct: 3 RPIQASLDLQALKQNLSIVRQAAT-HARVWSVVKANAYGHGIERIWSAI-GATDGFALLN 60 Query: 67 LDEALQLRQAGIDKEILIL-GVLLPNELELAVANAITVTIAS---LDWIALARLEKKECQ 122 L+EA+ LR+ G IL+L G +LE+ + +T + S L + ARL+ Sbjct: 61 LEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAP--- 117 Query: 123 GLKVHVKVDSGMGRIGLRSSKEVNLLIDSLKELGADVEGIFTHFATADEADDTKFNQQLQ 182 L +++KV+SGM R+G + + + + + +HFA A+ D + Sbjct: 118 -LDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGIS--GAMA 174 Query: 183 FFKKLIAGLEDKPRLVHASNSATSIWHSDTIFNAVRLGIVSYGLNPSGS-DLSLPFPLQE 241 ++ GL SNSA ++WH + F+ VR GI+ YG +PSG L+ Sbjct: 175 RIEQAAEGL---ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRP 231 Query: 242 ALSLESSLVHVKMISAGDTVGYGVTYTAKKSEYVGTVPIGYADGWTRNM-QGFSVLVDGQ 300 ++L S ++ V+ + AG+ VGYG YTA+ + +G V GYADG+ R+ G VLVDG Sbjct: 232 VMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGV 291 Query: 301 FCEIIGRVSMDQLTIRLSKA--YPLGTKVTLIGSNQQKNISTTDIANYRNTINYEVLCLL 358 +G VSMD L + L+ +GT V L G K I D+A T+ YE++C L Sbjct: 292 RTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWG----KEIKIDDVAAAAGTVGYELMCAL 347 Query: 359 SDRIPRIY 366 + R+P + Sbjct: 348 ALRVPVVT 355
>SECA#SecA protein signature. Length = 901 Score = 1052 bits (2723), Expect = 0.0 Identities = 394/903 (43%), Positives = 560/903 (62%), Gaps = 73/903 (8%) Query: 1 MANILRKVIENDKG-ELRKLEKIAKKVESYADQMASLSDRDLQGKTLEFKERYQKGETLE 59 + +L KV + LR++ K+ + + +M LSD +L+GKT EF+ R +KGE LE Sbjct: 2 LIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVLE 61 Query: 60 QLLPEAFAVVREAAKRVLGLFPYRVQIMGGIVLHNGDVPEMRTGEGKTLTATMPVYLNAI 119 L+PEAFAVVREA+KRV G+ + VQ++GG+VL+ + EMRTGEGKTLTAT+P YLNA+ Sbjct: 62 NLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121 Query: 120 AGEGVHVITVNEYLSTRDATEMGEVYSWLGLSVGINLAAKSPAEKREAYNCDITYSTNSE 179 G+GVHV+TVN+YL+ RDA ++ +LGL+VGINL KREAY DITY TN+E Sbjct: 122 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNE 181 Query: 180 VGFDYLRDNMVVRQEDMVQRPLNFALVDEVDSVLIDEARTPLIVSGAVSSETNQLYIRAD 239 GFDYLRDNM E+ VQR L++ALVDEVDS+LIDEARTPLI+SG + ++Y R + Sbjct: 182 YGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSS-EMYKRVN 240 Query: 240 MFVKTLT------------SVDYVIDVPTKTIGLSDSGIDKAESYFNLS-------NLYD 280 + L + +D ++ + L++ G+ E +LY Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 281 IENVALTHFIDNALRANYIMLLDIDYVVSEDGEILIVDQFTGRTMEGRRFSDGLHQAIEA 340 N+ L H + ALRA+ + D+DY+V +DGE++IVD+ TGRTM+GRR+SDGLHQA+EA Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIV-KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 359 Query: 341 KEGVRIQEESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREVYNMRIIPIPTNRPIA 400 KEGV+IQ E++T ASIT+QN FR+Y+KLAGMTGTA TE EF +Y + + +PTNRP+ Sbjct: 360 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMI 419 Query: 401 RIDHTDLLYPTLESKFRAVVEDVKTRHAKGQPILVGTVAVETSDLISRKLVEAGIPHEVL 460 R D DL+Y T K +A++ED+K R AKGQP+LVGT+++E S+L+S +L +AGI H VL Sbjct: 420 RKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 479 Query: 461 NAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLG----------------------- 497 NAK H EA I+ AG AVTIATNMAGRGTDI LG Sbjct: 480 NAKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKA 539 Query: 498 ------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMRRFG 551 + V E GGL +IGTERHESRRIDNQLRGRSGRQGD G S+FYLS+ED LMR F Sbjct: 540 DWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFA 599 Query: 552 SDRIKAFLDRMKLDEEDTVIKSGMLGRQVESAQKRVEGNNYDTRKQVLQYDDVMREQREI 611 SDR+ + ++ + + I+ + + + +AQ++VE N+D RKQ+L+YDDV +QR Sbjct: 600 SDRVSGMMRKLGM-KPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRA 658 Query: 612 IYANRRDVITANRDLGPEIKAMIKRTIDRAVDAHARSNR---KDAIDAIVTFARTSLVPE 668 IY+ R +++ + D+ I ++ + +DA+ I + + + Sbjct: 659 IYSQRNELLDVS-DVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLD 717 Query: 669 ESIS--AKELRGLKDDQIKEKLYQRALAIYDQQLSKLRDQEAIIEFQKVLILMIVDNKWT 726 I+ + L ++ ++E++ +++ +Y ++ + E + F+K ++L +D+ W Sbjct: 718 LPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVVG-AEMMRHFEKGVMLQTLDSLWK 776 Query: 727 EHIDALDQLRNAVGLRGYAQNNPVVEYQAEGFKMFQDMIGAIEFDVTRTMMKAQIH-EQE 785 EH+ A+D LR + LRGYAQ +P EY+ E F MF M+ +++++V T+ K Q+ +E Sbjct: 777 EHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEE 836 Query: 786 RERASQRATTAAPQNIQSQQSANTDD-------------LPKVERNEACPCGSGKKFKNC 832 E Q+ A + Q QQ ++ DD KV RN+ CPCGSGKK+K C Sbjct: 837 VEELEQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQC 896 Query: 833 HGR 835 HGR Sbjct: 897 HGR 899