>PERTACTIN#Pertactin signature. Length = 922 Score = 31.6 bits (71), Expect = 0.009 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 9/131 (6%) Query: 294 GGIATIIFGAIGVLASQALGRLAGFSVLV-SSGTLLAAMGTGNPTVAAGALYYMVSSTLT 352 GG ++ G GV S + LA V G + A TV+ G+L + + Sbjct: 281 GGFGPLLDGWYGVDVSDSTVDLAQSIVEAPQLGAAIRAGRGARVTVSGGSLSAPHGNVIE 340 Query: 353 ISAFFMLIELVERGQDAGANVLAVTMEAYGEGDEEEEEEEVGVTMPATMAVLGACFAACG 412 R A+ L++T++A V P + + G Sbjct: 341 TG-------GGARRFPPPASPLSITLQAGARAQGRALLYRVL-PEPVKLTLAGGAQGQGD 392 Query: 413 ILLAGLPPLSG 423 I+ LPP+ G Sbjct: 393 IVATELPPIPG 403
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 2e-24 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFG 63 +L DD IR +L L+ AG++ + + + D++VTD+ MP + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 FIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIER 118 + ++ + +P+LV++ ++ +A + GA ++ KPFD +LI I R Sbjct: 65 LLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>PF06580#Sensor histidine kinase Length = 349 Score = 41.4 bits (97), Expect = 1e-05 Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 51/133 (38%) Query: 470 IRNAVDHGIETPEKREAAGKNPEGTIKLSAKHRSGRILIELQDDGAGINRERVRQKAIDN 529 + N + HGI G I L +G + +E+++ G+ + Sbjct: 264 VENGIKHGIA--------QLPQGGKILLKGTKDNGTVTLEVENTGSLALKN--------- 306 Query: 530 DLIAADANLTDEEIDNLIFAPGFSTADKISDISGRGVGMDVVKRSIQALGG---RISISS 586 G G+ V+ +Q L G +I +S Sbjct: 307 ------------------------------TKESTGTGLQNVRERLQMLYGTEAQIKLSE 336 Query: 587 RPGHGSTFTMSLP 599 + G + +P Sbjct: 337 KQG-KVNAMVLIP 348
>FLAGELLIN#Flagellin signature. Length = 507 Score = 125 bits (314), Expect = 1e-33 Identities = 61/386 (15%), Positives = 119/386 (30%), Gaps = 12/386 (3%) Query: 4 ILTNISAMAALQTLRSIDAKMETTQSRVSSGLRVGTASDNAAYWSIATTMRSDNMALSAV 63 I TN ++ L + + + R+SSGLR+ +A D+AA +IA S+ L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLGAAKVDTAYSAM---ESAVEVVKQVKAKMVAATEEGVDRSKIQEEISQLQEQLR 120 G + T A+ + ++ V+++ + T D IQ+EI Q E++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SISSSASFSGENWLQADLTSATGNAVTKNVVGSFIRTADGSVSVKKID-YQLDSTTVLFD 179 +S+ F+G L G I + VK + + Sbjct: 124 RVSNQTQFNGVKVLSQ---DNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEA 180 Query: 180 EGGQLGIIDRVFNVTPASTTLKINTSGTISEHAVLTNSVDSLIKSGATFEGNYANVTTAV 239 G L + ++ AV+T++ + Y N Sbjct: 181 TVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKV-----YVNAANGQ 235 Query: 240 AGGAAAGDYVKVNGVWVKAVAAASNPGQEIAATSNAGANQWVVDVTPIPAGTVVTAAASL 299 A + V+ A + + IA G D + Sbjct: 236 LTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDG 295 Query: 300 DTVDIRTLSNEELDVMVRATDAALEAITSATADLGSISMRIAIQEDFVSKLTDSIDKGIG 359 + T++ E++ + V A + +AT + F + Sbjct: 296 NGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKL 355 Query: 360 RLVDADMNEESTKLKALQTQQQLAIQ 385 ++A+ + + + A Sbjct: 356 SDLEANNAVKGESKITVNGAEYTANA 381 Score = 78.2 bits (192), Expect = 1e-17 Identities = 32/181 (17%), Positives = 58/181 (32%) Query: 222 IKSGATFEGNYANVTTAVAGGAAAGDYVKVNGVWVKAVAAASNPGQEIAATSNAGANQWV 281 ++S + N + AV S A + A V Sbjct: 327 LQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKV 386 Query: 282 VDVTPIPAGTVVTAAASLDTVDIRTLSNEELDVMVRATDAALEAITSATADLGSISMRIA 341 + S + + + + + D+AL + + + LG+I R Sbjct: 387 TLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFD 446 Query: 342 IQEDFVSKLTDSIDKGIGRLVDADMNEESTKLKALQTQQQLAIQSLSIANTSSENILSLF 401 + +++ R+ DAD E + + Q QQ L+ AN +N+LSL Sbjct: 447 SAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLL 506 Query: 402 R 402 R Sbjct: 507 R 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 115 bits (289), Expect = 2e-30 Identities = 61/386 (15%), Positives = 118/386 (30%), Gaps = 11/386 (2%) Query: 4 ILTNIAAMSALQTLRSIGQDMEATQGRVSSGQRVGTASDNAAYWSIATTMRSDNMALSAV 63 I TN ++ L + + R+SSG R+ +A D+AA +IA S+ L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLGAAKVDTAYAGM---ESAIEVVKEIKAKLVAATEDGVDKNKVQEEITQLQEQLR 120 G + T + + ++ V+E+ + T D +Q+EI Q E++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 GISEAASFSGENWLQADLSVAGGTVTKDVVGSFVRDANGIVSVKKIDYTLDTDSVLFDTR 180 +S F+G L D + G + + VK + LD +V Sbjct: 124 RVSNQTQFNGVKVLSQDNQM--KIQVGANDGETITIDLQKIDVKSLG--LDGFNVNGPKE 179 Query: 181 ATGTKTGILDKVYTVAEDGVTLSINTGGVTSEVTVKSFSIDSLIKSGAAFQGNYASVTTA 240 AT K T + + + V + + + +TT Sbjct: 180 ATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTD 239 Query: 241 AAGGAGVGDYVKVEGTWVLAANATTAPTQEIAATTTTPAAASWIVATANAPTTTPAVTSL 300 A D K + A A + T + T Sbjct: 240 DAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTID----TKTGNDG 295 Query: 301 DGINIIGLSGTQINQMMKAVDAALKDMTSAAADLGSISMRIGLQEDFVSKLTDSIDSGVG 360 +G ++G ++ + + A ++ +A + F +S Sbjct: 296 NGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKL 355 Query: 361 RLVDAEMNEESTKLKALQTQQQLAIQ 386 ++A + + + A Sbjct: 356 SDLEANNAVKGESKITVNGAEYTANA 381 Score = 86.6 bits (214), Expect = 1e-20 Identities = 51/348 (14%), Positives = 105/348 (30%), Gaps = 12/348 (3%) Query: 65 DALGLGAAKVDTAYAGMESAIEVVKEIKAKLVAATEDGVDKNKVQEEITQLQEQLRGISE 124 D LG + + ++ K D + + + + Sbjct: 163 DVKSLGLDGFNVNGPKEATVGDLKSSFKN---VTGYDTYAVGANKYRVDVNSGAVVTDTT 219 Query: 125 AASFSGENWLQADLSVAGGTVTKDVVGSFVRD----ANGIVSVKKIDYTLDTDSVLFDTR 180 A + + ++ A ++ + G K I + Sbjct: 220 APTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFD 279 Query: 181 ATGTKTGILDKVYTVAEDGVTLSINTGGVT-SEVTVKSFSIDSLIKSGAAFQGNYASVTT 239 G I K V+ +IN VT + + + + + + + + Y SV Sbjct: 280 YKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVN 339 Query: 240 AAAGGAGVGDYVKVEGTWVLAANATTAPTQEIAATTTTPAAASWIVATANAPTTTPAVTS 299 + + + A NA ++ A A+ T T T+ Sbjct: 340 GQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTA 399 Query: 300 LD----GINIIGLSGTQINQMMKAVDAALKDMTSAAADLGSISMRIGLQEDFVSKLTDSI 355 + + ++D+AL + + + LG+I R + ++ Sbjct: 400 SGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNL 459 Query: 356 DSGVGRLVDAEMNEESTKLKALQTQQQLAIQSLSIANSSSESILSLFR 403 +S R+ DA+ E + + Q QQ L+ AN +++LSL R Sbjct: 460 NSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLAGELLIN#Flagellin signature. Length = 507 Score = 116 bits (291), Expect = 1e-30 Identities = 56/379 (14%), Positives = 111/379 (29%), Gaps = 6/379 (1%) Query: 4 ILTNINAMSALQTLRSISSNMEDTQSRISSGLKVGSASDNAAYWSIATTMRSDNEALGAV 63 I TN ++ L S++ R+SSGL++ SA D+AA +IA S+ + L Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLGAAKVDTAYAGM---ESVIDVVKQIKNKLVTAQESSADKTKIQGEITQLQDQLK 120 G + T + + + V+++ + S +D IQ EI Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 GIVESASFSGENWLKADLSAAATTKSVVGSFVREGGTVSVKTIDYLMDASKVLVDTRATG 180 + F+G L D + G + + +D V AT Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQ-KIDVKSLGLDGFNVNGPKEATV 182 Query: 181 TKTGILDKVQDVGVDTVTLTINDGGTLSEHTVQAYSLDTLTTAGAEFQGNFAKTATDNYV 240 K ++ V + + TD+ Sbjct: 183 GDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAE 242 Query: 241 KVEGSWVKAV--ASAGTQEIASTTTAAGTITAGTWMVDTTNAGAGTVAASGSVLSMNISS 298 + ++AGT E + A G ++ Sbjct: 243 NNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTT 302 Query: 299 LTGTQLSALVKAVDKSLTELTSAGAQLGSISSRISLQEDFASKLKGSIDKGVGRLVDADM 358 + G +++ V + + +A Q + F K + ++A+ Sbjct: 303 INGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANN 362 Query: 359 NEESTRLKALQTQQQLAIQ 377 + + + A Sbjct: 363 AVKGESKITVNGAEYTANA 381 Score = 79.3 bits (195), Expect = 3e-18 Identities = 50/334 (14%), Positives = 98/334 (29%), Gaps = 2/334 (0%) Query: 63 VQDALGLGAAKVDTAYAGMESVIDVVKQIKNKLVTAQESSADKTKIQGEITQLQDQLKGI 122 V + +++ + V + + Sbjct: 174 VNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAAN 233 Query: 123 VESASFSGENWLKADLSAAATTKSVVGSFVREGGTVSVKTIDYLMDASKVLVDTRATGTK 182 + + EN DL + + G + D V Sbjct: 234 GQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGN 293 Query: 183 TGILDKVQDVGVDTVTLTINDGGTLSEHTVQAYSLDTLTTAGAEFQGNFAKTATDNYVKV 242 G + + VTLT+ D + + A + + G F Sbjct: 294 DGNGKVSTTINGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESA 353 Query: 243 EGSWVKAVASAGTQEIASTTTAAGTITAGTWMV--DTTNAGAGTVAASGSVLSMNISSLT 300 + S ++A + + + A T A V A+ S L ++ Sbjct: 354 KLSDLEANNAVKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAA 413 Query: 301 GTQLSALVKAVDKSLTELTSAGAQLGSISSRISLQEDFASKLKGSIDKGVGRLVDADMNE 360 + + ++D +L+++ + + LG+I +R +++ R+ DAD Sbjct: 414 KKSTANPLASIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYAT 473 Query: 361 ESTRLKALQTQQQLAIQSLSIANSDSQNILSLFR 394 E + + Q QQ L+ AN QN+LSL R Sbjct: 474 EVSNMSKAQILQQAGTSVLAQANQVPQNVLSLLR 507
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 299 bits (766), Expect = e-105 Identities = 105/246 (42%), Positives = 158/246 (64%), Gaps = 5/246 (2%) Query: 1 MIRFLVTIAVLLALPGLANAQQFPSDLFNTQIDGSVAAWI--IRTFGLLTVLSVAPGILI 58 M R L VLL L Q P + + + G +W ++T +T L+ P IL+ Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPG-ITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILL 59 Query: 59 MVTSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQN 118 M+TSF R +I F +LR+ +G S P N +LL +A+F+TF++MSP DK + D QP + Sbjct: 60 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEE 119 Query: 119 QINEQQAIQRIAEPFRTFMNANTRDKDLKLFVDIARERGQGVMTDNVVDYRVLVPAFMLS 178 +I+ Q+A+++ A+P R FM TR+ DL LF +A + V R+L+PA++ S Sbjct: 120 KISMQEALEKGAQPLREFMLRQTREADLGLFARLANT--GPLQGPEAVPMRILLPAYVTS 177 Query: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 E++ F+IGF I +PFL+IDL++A++ MA+GMMM+PP +I+LPFK++ FVL+DGW LLVG Sbjct: 178 ELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVG 237 Query: 239 SLVRSF 244 SL +SF Sbjct: 238 SLAQSF 243
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 261 bits (668), Expect = 1e-90 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 30/243 (12%) Query: 7 PALLLPLALLAGC---------QNNQTLKEIGNAPAMSPIGSGLQFSQTPQMGMYPKQPK 57 L + L GC Q + + + P +P+ +G F Q+ Q Y QP Sbjct: 10 AISSLLVLSLTGCAWIPSTPLVQGATSAQPV---PGPTPVANGSIF-QSAQPINYGYQP- 64 Query: 58 HMASGYSLWSDSQGALFKDLRALNIGDILTVNIQINDKADFDNETERNRTNSSGLNWKAK 117 LF+D R NIGD LT+ +Q N A + +R + + Sbjct: 65 ---------------LFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTV 109 Query: 118 AQIL-GWTPDADSNIKYGSDTDTQAKGKTKRSEKLTLLVAAVVTGILENGNLIISGSQEV 176 + L G +A ++++ KG S + + V +L NGNL + G +++ Sbjct: 110 PRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQI 169 Query: 177 RVNHEIRILNVGGIVRPQDVDAQNMISYERIAEARISYGGRGRLTEVQQPPVGQQVVDLF 236 +N + G+V P+ + N + ++A+ARI Y G G + E Q Q+ Sbjct: 170 AINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNL 229 Query: 237 SPL 239 SP+ Sbjct: 230 SPM 232
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 506 bits (1304), Expect = 0.0 Identities = 363/373 (97%), Positives = 366/373 (98%) Query: 1 MRLLRIIAAAILFSAQPFLSVSAAHADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDS 60 MR+LRIIAAA++FSA PFLS A ADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDS Sbjct: 1 MRVLRIIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDS 60 Query: 61 LRSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGD 120 LRSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGD Sbjct: 61 LRSSPFTEQSMRAMLQNLGITTQGGQSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGD 120 Query: 121 ATSLRGGTLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIE 180 ATSLRGG LIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIE Sbjct: 121 ATSLRGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIE 180 Query: 181 RELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRT 240 RELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR Sbjct: 181 RELPSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPRV 240 Query: 241 ADLTRLMAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQV 300 ADLTRLMAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQV Sbjct: 241 ADLTRLMAEIENLTVETDTPAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQV 300 Query: 301 IQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVEGPDLRTLVAGLNSIGLKADGIIAILQGI 360 IQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVEGPDLRTLVAGLNSIGLKADGIIAILQGI Sbjct: 301 IQPAPFSRGQTAVQPQTDIMAMQEGSKVAIVEGPDLRTLVAGLNSIGLKADGIIAILQGI 360 Query: 361 KSAGALQAELVLQ 373 KSAGALQAELVLQ Sbjct: 361 KSAGALQAELVLQ 373
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 41.1 bits (96), Expect = 3e-06 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 15/80 (18%) Query: 4 LAIAATGMDAQQTNLEVIANNIANINTTGYKRARAEFTDLLYQTERMQGVPNRANQAIVP 63 + A +G++A Q L +NNI++ N GY R T + + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQT---TIMAQANSTLGA----------- 49 Query: 64 EGANIGLGVQTSAVRNIHTQ 83 G +G GV S V+ + Sbjct: 50 -GGWVGNGVYVSGVQREYDA 68 Score = 39.2 bits (91), Expect = 1e-05 Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 214 IKQSYLEGSNVDAVKEITDLITAQRAYEMNSKVITTADEM 253 + S V+ +E +L Q+ Y N++V+ TA+ + Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAI 538
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 33.1 bits (75), Expect = 6e-05 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 19 GISSLTESVFGSEQTTPAQQTGASFASVLGNMSVDAMNSLKKAEVAS------FEGIQGK 72 GI + + + + AQ++ A++ + + A+ F + Sbjct: 5 GIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPG 64 Query: 73 ANTREVVDAVLSAEQSLQTAIALRDKIVSAYLDITKMQI 111 +V+ + A S+Q I +R+K+V+AY ++ MQ+ Sbjct: 65 VALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 27.2 bits (60), Expect = 0.023 Identities = 9/38 (23%), Positives = 20/38 (52%) Query: 97 NVNILIEMADMREANRSYDANLQVIRQTRDLVASTIDL 134 VN+ E +++ + Y AN QV++ + + I++ Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545 Score = 26.5 bits (58), Expect = 0.038 Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 19/72 (26%) Query: 5 SAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDR------- 57 S+ A SGL L S NI++ G Y R+T Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAG-------YTRQTTIMAQANSTLGAGGWV 53 Query: 58 -----VSGVERV 64 VSGV+R Sbjct: 54 GNGVYVSGVQRE 65
>cloacin#Cloacin signature. Length = 551 Score = 32.4 bits (73), Expect = 0.010 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 13/79 (16%) Query: 739 HPVMLGSQDRLQLLQKKVRQAQEDITNNKGDVKAKQRILDIADHVKEKI------AEESR 792 H M G Q+ K ++AQ D V KQ D A K A ESR Sbjct: 380 HDPMAGGHRMWQMAGLKAQRAQTD-------VNNKQAAFDAAAKEKSDADAALSSAMESR 432 Query: 793 LEDEEHSDGGETDSNDERK 811 + E+ E + NDE+ Sbjct: 433 KKKEDKKRSAENNLNDEKN 451
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 30.8 bits (69), Expect = 0.009 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 256 IDRTKAE--ATAAKAEAAQVKASADRLAGIGGAVRAVVDGIQESRIRDQIRKEFARDLAK 313 + +T+AE A A A AQ KA A+R A + + D + E+ + R A +LA Sbjct: 62 LKKTQAEQAARAKAAAEAQAKAKANRDA----LTQRLKDIVNEALRHNASRTPSATELAH 117 Query: 314 AKAAMEKAQAEAAKAKNSQRNAEKQAADQRHAFRQQAQRLVSAQQEIRNLSAALAAALDE 373 A A +A+ E + ++ A K+A AF++ QR ++E L A E Sbjct: 118 ANNAAMQAEDERLRLAKAEEKARKEAEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAE 177 Query: 374 PQ 375 + Sbjct: 178 EK 179
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 32.4 bits (73), Expect = 0.007 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 20/100 (20%) Query: 273 DRAMTAAAKEEAKTVATASRDALVRDAREQGFLTTGMYWSTLAQVSEITTAMTNERPEDT 332 ++A A A EA+ A A+RDAL + ++ +I T Sbjct: 68 EQAARAKAAAEAQAKAKANRDALTQ------------------RLKDIVNEALRHNASRT 109 Query: 333 PPRIDGDFGE--AIQKAFDALRLQVSGEAERQALSANEFA 370 P + A+Q + LRL + E R+ A E A Sbjct: 110 PSATELAHANNAAMQAEDERLRLAKAEEKARKEAEAAEKA 149
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.7 bits (66), Expect = 0.029 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 4/78 (5%) Query: 114 VQAARSQSWAEARAMLKRAGYGISECRVDFSYYNTPEARRRLIVIGRLGERDGFIEGAIE 173 +Q R Q +AEA + AG D Y PE RL+ G G + Sbjct: 722 LQKFRGQLFAEALHLY-LAGERYFPSPEDEEIYFRPEQELRLVETGVQGRLWALLTREGA 780 Query: 174 DAATDIPK---TVRHAFT 188 AA + +V F Sbjct: 781 PAAEGAAQKGYSVNTTFV 798
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 32.6 bits (74), Expect = 0.001 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 12/104 (11%) Query: 117 TLNALYRFPL-ESLPITPYVGAGVGINVPHVEVNRPSGKTFEYQFGGATLQAQAGLSYRI 175 L A +P+ + L I +G V V + T G + G+ Y I Sbjct: 99 QLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDT------GVSPVFAGGVEYAI 152 Query: 176 TDNWSTFVEYKGTYSFIDVDIDNGASLKTDIITNAVNFGVAYKF 219 T +T +EY+ T + D + D ++ GV+Y+F Sbjct: 153 TPEIATRLEYQWTNNIGDAHTIG---TRPDNGM--LSLGVSYRF 191
>SURFACELAYER#Lactobacillus surface layer protein signature. Length = 439 Score = 32.3 bits (73), Expect = 0.002 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 122 IVSYAAGRMLGLPPKLATLIACGNSICGNSAIAAAAPAIGAKPEDVAASIAFTAVLGVAA 181 IVS AA +L + P AT + + N+ A A DV + + +A+ VA Sbjct: 7 IVSAAAAALLAVAPIAATAMPVNAATTINADSAINANT--NAKYDVDVTPSISAIAAVAK 64 Query: 182 VLLMPFLP 189 MP +P Sbjct: 65 SDTMPAIP 72
>PF05043#Transcriptional activator Length = 493 Score = 28.8 bits (64), Expect = 0.033 Identities = 9/44 (20%), Positives = 20/44 (45%) Query: 17 HLTRAAEAIGLTASAVSSAIKNLEAFYNVELFHRVGRNIELTES 60 H + AE + T AV + ++++ + +FH I + + Sbjct: 27 HRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIRIINT 70
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.1 bits (75), Expect = 4e-04 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 6/120 (5%) Query: 30 AKSLDERAQNIQDELAEAKRLREEAQ-HLLAEYQRK---RKEAEAEAAGIVAAAEREAAA 85 +K++++ Q+ + A+ + + +EA+ ++ A Q + +E + E Sbjct: 1048 SKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVE 1107 Query: 86 LTEEAKQKTEEF--VARRTALSEQKIKQAEEDAIGAVRAAAVDIAIAASEKLIAEKTTAA 143 E+AK +TE+ V + T+ K +Q+E A A D + E TTA Sbjct: 1108 KEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTAD 1167
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 48.3 bits (115), Expect = 1e-07 Identities = 28/205 (13%), Positives = 66/205 (32%), Gaps = 5/205 (2%) Query: 625 DAPGAAALRLSQKNRLAEIETELDEARSILDEAEDQLAAKTEDIRSSELRLSDVRDRSRL 684 A GA A L ++ L + L++ R + +L E E +V + L Sbjct: 128 TALGAEADTLKTQSSLLQ--ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVL 185 Query: 685 ATRHLAEAREALTAAERASG--DLLRRRDIVSEALNQIGAQIDEIAVQEENARIEMEDAP 742 L + + + ++ +L ++R L +I + V++ Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLH 245 Query: 743 DLSVLDLRLRESQLEVATDRGLLAEARARHEGVSRE-AESRQRRIQAIGQERSTWQSRAA 801 ++ + E + + L +++ E + E +++ ++ + Sbjct: 246 KQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLR 305 Query: 802 SAADHIATLREREEEAREEIAELDI 826 D+I L + E I Sbjct: 306 QTTDNIGLLTLELAKNEERQQASVI 330 Score = 38.3 bits (89), Expect = 2e-04 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 9/187 (4%) Query: 722 AQIDEIAVQEENARIEMEDAPDLSVLDLRLRE--SQLEVATDRGLLAEARARHEGVSREA 779 A++++ Q + IE+ P+L + D + S+ EV L+ E + + + Sbjct: 146 ARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQ---NQK 202 Query: 780 ESRQRRIQAIGQERSTWQSRAASAADHIATLREREEEAREEIAELDIAPEEFDEKRRNLL 839 ++ + ER T +R + + R ++ + + IA E+ + Sbjct: 203 YQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYV 262 Query: 840 ---NELQKTEDARREAADRLAEAE-NLQRAADRVAATALSELAEAREKRGRAEERLVSAR 895 NEL+ + + + A+ Q L +L + + G L Sbjct: 263 EAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNE 322 Query: 896 EKRQETE 902 E++Q + Sbjct: 323 ERQQASV 329 Score = 31.0 bits (70), Expect = 0.031 Identities = 23/179 (12%), Positives = 60/179 (33%), Gaps = 15/179 (8%) Query: 180 AELRLRAAETNLERLEDVTAQLESQIESLKRQARQANRFKMLSADIRAREATLLHIRWVE 239 + R + ++E + +L + + R L + + + + + Sbjct: 149 EQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELN 208 Query: 240 AKEAEGEAESALNQATNIVAEKAQGQMEAAKQQGIASLK------LPELREDEARVAAAL 293 + E + L + I + ++E ++ +SL + E E + A+ Sbjct: 209 LDKKRAERLTVLAR---INRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAV 265 Query: 294 QRLQIARTQLDDEANRLLRRRDELARRLSQLGEDIIREERLVSDNAQILARLDEEEAEL 352 L++ ++QL+ + +L ++E +I+ Q + EL Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEIL------DKLRQTTDNIGLLTLEL 318
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 309 bits (792), Expect = 1e-96 Identities = 110/473 (23%), Positives = 178/473 (37%), Gaps = 95/473 (20%) Query: 434 GRRVILVRIETSPEDIHGMHA--AEGILTTRGGMTSHAAVVARGMGIPCVTGAGSMRVDM 491 +++ + +P D ++ +G T GG TSH+A+++R + IP V G + + Sbjct: 154 AEETVIIAEDLTPSDTAQLNKQFVKGFATDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKI 213 Query: 492 RNKVLIGVGCMLKRGDVITIDGSSGRVLKG----EVPMTQPELSGDFGKLMEWAD----- 542 ++ GD++ +DG G V+ EV + + + + EWA Sbjct: 214 QH------------GDMVIVDGIEGIVIVNPTEEEVKAYEEKRAAFEKQKQEWAKLVGEP 261 Query: 543 ----SLRRMTVRTNADTPADARAARAFGAEGIGLCRTEHMFFEGDRIHVMREMILAESEK 598 + + N TP D A G EGIGL RTE ++ + D++ E Sbjct: 262 STTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFLYMDRDQLPTEEE-------- 313 Query: 599 GRRAALDELLPMQRSDFTELFQIMHGLPVTIRLLDPPLHEFLPKTDGEIVEVAAAMGMPQ 658 Q + E+ Q M G PV IR LD + L Sbjct: 314 ------------QFEAYKEVVQRMDGKPVVIRTLDIGGDKELSY---------------- 345 Query: 659 TVFRQRLDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVAAARITGAPVVPEIMV 718 L E NP LG R RL + +I Q RA+ A+ ++M Sbjct: 346 ------LQLPKELNPFLGFRAIRLCLEKQDIFRTQLRALLRASTYGN--------LKVMF 391 Query: 719 PLVGLRSELDYVTEVIDGVAAAVAQETGMEIEYL--TGTMIELPRAALRAHVIAEAAEFF 776 P++ EL ++ + E G+++ G M+E+P A+ A++ A+ +FF Sbjct: 392 PMIATLEELRQAKAIMQEEKDKLLSE-GVDVSDSIEVGIMVEIPSTAVAANLFAKEVDFF 450 Query: 777 SFGTNDLTQTTFGISRDDAARFINTYQRKGIIERDPFISLDFDGVGELIRIAAERGRQTR 836 S GTNDL Q T R + + P+ V +I+ A G+ Sbjct: 451 SIGTNDLIQYTMAADRMNE---------RVSYLYQPYHPAILRLVDMVIKAAHSEGKWV- 500 Query: 837 PELKLGICGEHGGDPASIHFCEDADLDYVSCSPFRVPIARLAAAQATLAAKRD 889 G+CGE GD +I LD S S + AR + + + Sbjct: 501 -----GMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKLSKEELKP 548
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.9 bits (62), Expect = 0.019 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%) Query: 1 MRKASRLFEIIQILRLARRPVTAQT-IAEKLE-----VTARSVYRDIAALQTMRVPVEGE 54 M K R +I +I+ + Q + + L+ VT +V RDI L ++VP Sbjct: 1 MNKGQRHIKIREIIT--ANEIETQDELVDILKKDGYNVTQATVSRDIKELHLVKVPTNNG 58 Query: 55 RGV 57 Sbjct: 59 SYK 61
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.7 bits (95), Expect = 6e-07 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 65 VAEADGALIGYALLLPLYRAQEGRRGLELHHLFVRDGHRGHGTGQHLVSRARDIAKRLGC 124 + + IG + + + V +R G G L+ +A + AK Sbjct: 69 LYYLENNCIGRIKI-----RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHF 123 Query: 125 DYLSVSATTGNVAAHRFYENMDF 147 L + N++A FY F Sbjct: 124 CGLMLETQDINISACHFYAKHHF 146
>SECYTRNLCASE#Preprotein translocase SecY subunit signature. Length = 437 Score = 24.7 bits (54), Expect = 0.048 Identities = 9/36 (25%), Positives = 14/36 (38%) Query: 25 RIMPVIDIFMRLFAALLAAIPQRVLRIFFLPGFFGF 60 ++ I L+ L+A +P L F F F Sbjct: 369 YVLNRITWPGSLYLGLIALVPTMALVGFGASQNFPF 404
>PF06580#Sensor histidine kinase Length = 349 Score = 44.1 bits (104), Expect = 8e-07 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 28/154 (18%) Query: 316 PIAETIESCEAMLGLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKF---- 371 +A+ + ++ L L + + L Q I D + ++ L N IK Sbjct: 217 SLADELTVVDSYLQLASIQFEDRLQFENQ--INPAIMDVQVPPMLVQTLVENGIKHGIAQ 274 Query: 372 TDAGGVVSIDAAREGRLLKLTVSDTGIGIASDKIDLLGQPFMQVQNEYTRCYEGTGLGLS 431 GG + + ++ + L V +TG + E TG GL Sbjct: 275 LPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK------------------ESTGTGLQ 316 Query: 432 LV-KGLVALHGG--TFAIASQPGEGTVVTIMLPA 462 V + L L+G ++ + G +++P Sbjct: 317 NVRERLQMLYGTEAQIKLSEKQG-KVNAMVLIPG 349
>TYPE3OMBPROT#Type III secretion system outer membrane B protein family signature. Length = 538 Score = 29.3 bits (65), Expect = 0.026 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 236 QLATTLSGLGMEFSEAAFVLQCFYPHLSAAEGDMSRAEALLDRLDIVECEE 286 Q T+L+G + F+ + FY + A GD S+ +A+++RLD + E Sbjct: 57 QNQTSLTGKSLLFARDR--AEVFYEAIKLAGGDTSKIKAMMERLDTYKLGE 105
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 28.6 bits (64), Expect = 0.039 Identities = 19/64 (29%), Positives = 27/64 (42%) Query: 33 LCGPLLGRTLVRHGAAPVLVAGSLLFAAGFAVLAFAGGVASYLLGWAVIGFAATCGLTTA 92 C P+LG R G PVL+ A +A++A A + +G V G G Sbjct: 58 ACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAG 117 Query: 93 AHAA 96 A+ A Sbjct: 118 AYIA 121
>56KDTSANTIGN#Rickettsia 56kDa type-specific antigen protein signature. Length = 533 Score = 27.2 bits (60), Expect = 0.015 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%) Query: 1 MKRVMMIAAALLMGSNLAFAAEAIE 25 MK++M+IA+A+ S L F+A AIE Sbjct: 1 MKKIMLIASAMSALS-LPFSASAIE 24
>PHAGEIV#Gene IV protein signature. Length = 426 Score = 31.1 bits (70), Expect = 0.004 Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 21/151 (13%) Query: 74 VPVGESWMIKQLLDAGARTLLVPMVDSADQARDLVSAMHYPPRGIRGMGAAVARASAFNT 133 V S + K + +P S +Q D S P G + F Sbjct: 84 VGSIPSIIQKYNPNNQDYIDELP--SSDNQEYDDNS----APSGGFFVPQNDNVTQTFKI 137 Query: 134 ITDYADSASDSVCLLVQAETRAAINDLDNILAVEGVDG-VFIGPAD-LAADMGYLGRIDE 191 A V L V++ T + N+L+V+G + V P D L +L +D Sbjct: 138 NNVRAKDLIRVVELFVKSNTSKS----SNVLSVDGSNLLVVSAPKDILDNLPQFLSTVDL 193 Query: 192 PEVQAVIEAAIVKI---------VAAGKAAG 213 P Q +IE I ++ AAG G Sbjct: 194 PTDQILIEGLIFEVQQGDALDFSFAAGSQRG 224
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 27.1 bits (60), Expect = 0.019 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 61 RAQGQNVVEAVKE------NPGTATSLLAIVGALGFAIGYAVGAGTQQS 103 +G+ VVEA P TSL I+G L AI G+G Q + Sbjct: 953 EKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 31.3 bits (71), Expect = 0.007 Identities = 11/73 (15%), Positives = 28/73 (38%) Query: 132 LAGVVLANRSRASLSRKVLAATFILQAFFGAVVATVVIPGDITSPNAVALTSPLAFSGML 191 L +S + + ++ +L A F + G I ++ + S +A S ++ Sbjct: 425 LPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484 Query: 192 GFTVIIMISAKII 204 + + A ++ Sbjct: 485 ALILTPALCATLL 497
>PF05272#Virulence-associated E family protein Length = 892 Score = 33.1 bits (75), Expect = 0.006 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 298 DWLLGLPWGKKSKIKTDLNSAETILDQDHFGLDKVKERIVEYLAVQARASKIRGP----- 352 DW+ W + +++ L D+ ++V + +++ P Sbjct: 537 DWVKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFD 596 Query: 353 -ILCLVGPPGVGKTSLAKSIA 372 + L G G+GK++L ++ Sbjct: 597 YSVVLEGTGGIGKSTLINTLV 617
>DNABINDINGHU#Prokaryotic integration host factor signature. Length = 91 Score = 116 bits (293), Expect = 4e-38 Identities = 50/88 (56%), Positives = 59/88 (67%) Query: 2 NKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKGR 61 NK +L++ VAE LTK D+A+AVDAVF V S L G ++L GFG+F V R A KGR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPSTGAEVDIPARNVPKFSAGKGLKDAV 89 NP TG E+ I A VP F AGK LKDAV Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAV 90
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.023 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 201 TEEIKPDRSNLDKPAEAPADAAPVPPSNAAKPKT--DAPETDPKLKTPATAPKAAEANVK 258 E +P+ + P EAP P KPK + +K + P + N Sbjct: 75 EPEPEPEPIP-EPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTA 133 Query: 259 TAEKEAAGSAKPS 271 A ++ + + Sbjct: 134 PARPTSSTATAAT 146
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.7 bits (222), Expect = 1e-23 Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 23/253 (9%) Query: 5 KVAIVTAGGSGMGAAVAKRLAADGYKLAILSSSGKGEELAKELGGIGVTGSNQSNDDLSR 64 K+A +T G+G AVA+ LA+ G +A + + + E + D+ Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 LADLT------LEKFGRIDVLVNSAGHGPRASILDITDEQWHTGLDVYLMNVIRPTRIVA 118 A + + G ID+LVN AG I ++DE+W V V +R V+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 119 PVMVKQKAGAIVNISTAWAFEPSSMFPTSAVFRAGLASYTKIFADTYAADNVRMNNVLPG 178 M+ +++G+IV + + A P + A +A +TK A N+R N V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 179 ----------WIDSLPAT-------EERRESVPMQRYGKSEEIAATVAFLASEGAGYITG 221 W D A E + +P+++ K +IA V FL S AG+IT Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 222 QNIRVDGGLTRSV 234 N+ VDGG T V Sbjct: 249 HNLCVDGGATLGV 261
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 50.1 bits (119), Expect = 5e-08 Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 11/191 (5%) Query: 767 DDDSAEADGDADENGVNEAANSDEDGKRKRRRRGKRGGRRNRDEALDAAEAEAGDDSETE 826 A A V E + + K + +NR+ A +A + E Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE 1084 Query: 827 GEEVSVAAPVAEEPAATEVVEDAVADVVAEEAPKKPRRTRKAKAKTEAEEAPKAETVETV 886 VA +E A V EE K + K ++ +PK E ETV Sbjct: 1085 -----VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETV 1139 Query: 887 EPVIIEPAVVEATVVDVAIEEVGEASADLAPETEAPATEEKTRANRGSNVSSSEPVVTSS 946 +P EPA V++ + ++ + +TE PA ++T +N V+ S V T + Sbjct: 1140 QPQ-AEPARENDPTVNI---KEPQSQTNTTADTEQPA--KETSSNVEQPVTESTTVNTGN 1193 Query: 947 GSSANPDGDEP 957 NP+ P Sbjct: 1194 SVVENPENTTP 1204
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 35.7 bits (82), Expect = 0.001 Identities = 9/88 (10%), Positives = 23/88 (26%) Query: 1881 HQMEVSEPVARAIAATQPAAERRVETRPQPAAVAPVQQRPAQPQPAPAPAALRGSLPLEN 1940 + +P + +P E E + V + +P+P P + ++ Sbjct: 61 EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKP 120 Query: 1941 RQTENRQAPAPAQPVAANPAGRREEGGG 1968 ++ P + Sbjct: 121 VESRPASPFENTAPARPTSSTATAATSK 148 Score = 31.5 bits (71), Expect = 0.032 Identities = 22/115 (19%), Positives = 31/115 (26%), Gaps = 11/115 (9%) Query: 1906 TRPQPAAVAPVQ--QRPAQPQPAPAPAALRGSLPLENRQTEN---RQAPAPAQPVAAN-P 1959 T PA + P Q Q P +P P P P + + P P Sbjct: 53 TMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVE 112 Query: 1960 AGRREEGGGWISDLLRGASRDGQEASAASAPRTSAEQQPTRAAD-TRNPRHMVES 2013 +R+ R AS A A T+ PR + + Sbjct: 113 QPKRDV----KPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRN 163
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 638 bits (1646), Expect = 0.0 Identities = 441/480 (91%), Positives = 464/480 (96%) Query: 3 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWVSAGEGDLVVTDVVMPDENAF 62 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRW++AG+GDLVVTDVVMPDENAF Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 63 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIAIIGRALSEPK 122 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELI IIGRAL+EPK Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 123 RKPAKLDDDMQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 182 R+P+KL+DD QDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDY 183 Query: 183 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQNRSTGRFEQAEGGTLFLDEIGDM 242 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQ RSTGRFEQAEGGTLFLDEIGDM Sbjct: 184 GKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDM 243 Query: 243 PMDAQTRLLRVLQQGEYTTVGGRTPIRTDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 302 PMDAQTRLLRVLQQGEYTTVGGRTPIR+DVRIVAATNKDLKQSINQGLFREDLYYRLNVV Sbjct: 244 PMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVV 303 Query: 303 PLRLPPLRDRAEDIPDLVRHFIQQGEKEGLEGKRFESEALEVMKAYAWPGNVRELENLIR 362 PLRLPPLRDRAEDIPDLVRHF+QQ EKEGL+ KRF+ EALE+MKA+ WPGNVRELENL+R Sbjct: 304 PLRLPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVR 363 Query: 363 RLMALYPQEVITREIIEQELQSDVPDSPLDKMAVRTGSLTISQAVEENMRDYFASFGDGL 422 RL ALYPQ+VITREIIE EL+S++PDSP++K A R+GSL+ISQAVEENMR YFASFGD L Sbjct: 364 RLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDAL 423 Query: 423 PPPGLYDRVLRELEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSRP 482 PP GLYDRVL E+EYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSR Sbjct: 424 PPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSRS 483
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 405 bits (1043), Expect = e-140 Identities = 158/478 (33%), Positives = 254/478 (53%), Gaps = 30/478 (6%) Query: 2 ASDILVVDDEADIREIVAGILSDEGHETRMAFDSDSALAAISERVPRLIFLDIWMQGSKL 61 + ILV DD+A IR ++ LS G++ R+ ++ + I+ L+ D+ M Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD--E 60 Query: 62 DGLALLDEIKSRHPEIPVVMISGHGNIETAVNAIKRGAFDFIEKPFKADRLILIAERALE 121 + LL IK P++PV+++S TA+ A ++GA+D++ KPF LI I RAL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 122 NSKLKREVQELKKRTGDAVELVGASLAVSQLRQTIDRVAPTNSRIMILGPSGSGKELVAR 181 K + E + G LVG S A+ ++ + + R+ T+ +MI G SG+GKELVAR Sbjct: 121 EPKRRPSKLEDDSQDGM--PLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVAR 178 Query: 182 MVHKKSSRASGPFVALNAATITPDRMEIALFGTEG---LPGQPRKVGALEEAHRGVLYLD 238 +H R +GPFVA+N A I D +E LFG E Q R G E+A G L+LD Sbjct: 179 ALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLD 238 Query: 239 EVGEMPRETQNKILRVLVDQQFERVGGGKRVKVDVRIISSTAHHLESLIAEGQFREDLYH 298 E+G+MP + Q ++LRVL ++ VGG ++ DVRI+++T L+ I +G FREDLY+ Sbjct: 239 EIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYY 298 Query: 299 RLAVVPVKVPALSERREDIPFLVDMFMRQISEQAGIRPRKIGDDAMAVLQTHDWPGNIRQ 358 RL VVP+++P L +R EDIP LV F++Q +E+ G+ ++ +A+ +++ H WPGN+R+ Sbjct: 299 RLNVVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKRFDQEALELMKAHPWPGNVRE 357 Query: 359 LRNNIERLMILAR---------------------PEGGEAPISADMLPSDIGDMLPK-IS 396 L N + RL L E A + + + + + + + Sbjct: 358 LENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFA 417 Query: 397 AQGDQHIMTLPLREAREMFERDYLVAQINRFGGNISRTAEFVGMERSALHRKLKSLGV 454 + GD + E ++A + GN + A+ +G+ R+ L +K++ LGV Sbjct: 418 SFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>PF03944#delta endotoxin Length = 633 Score = 30.0 bits (67), Expect = 4e-04 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Query: 19 NAREEFFRQRNLFLAQSYASATSEIARLNARVDGLEADLRLARGEVDDTLN 69 N ++ R+ FL Q + T +AR+NA + GL+A++ +VD+ LN Sbjct: 88 NLMQDILRETERFLNQRLNTDT--VARVNAELTGLQANVEEFNRQVDNFLN 136
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 24.6 bits (53), Expect = 0.050 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 14/71 (19%) Query: 12 VAFAAIAQAQVREAPDIPTAKDKESVRLERCSASISDF-----HGWQ---------LGKA 57 +A AI Q+ A D+P K R I D + Sbjct: 1 MAIPAIQPYQMPTASDMPQNKVSWVPDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANI 60 Query: 58 KRLRDWCRQNG 68 ++L++ C Q G Sbjct: 61 RKLKNQCVQLG 71
>FIMREGULATRY#Escherichia coli: P pili regulatory PapB protein signature. Length = 104 Score = 32.2 bits (73), Expect = 5e-04 Identities = 9/35 (25%), Positives = 21/35 (60%) Query: 213 VIDAIEDEYLSGKTGRDICRRYHISQGHMRDMVRR 247 VI A++D + G + +++C +Y ++ G+ + R Sbjct: 47 VILAMKDYLVGGHSRKEVCEKYQMNNGYFSTTLGR 81
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 24.0 bits (52), Expect = 0.047 Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 39 RLDDARRKANVHKSTALVAKAL 60 ++ DAR+K V KS +V+ AL Sbjct: 13 KIRDARKKGQVAKSKEVVSTAL 34
>PF04183#IucA / IucC family Length = 580 Score = 26.4 bits (58), Expect = 0.015 Identities = 9/46 (19%), Positives = 20/46 (43%) Query: 4 SLKVLKDIFPKNEPAFEAPFRVETDKDGEVHIRDAQGDILATFARY 49 ++++K+ FP+ + + V + + I D Q T R+ Sbjct: 446 DMRLVKEEFPEMDSLPQEVRDVTSRLSADYLIHDLQTGHFVTVLRF 491
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 31.6 bits (71), Expect = 0.007 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 22/123 (17%) Query: 191 ADVTKGMQVREEVEDYQHVGPDNARDITPAQPSVMARLRAAQEAPQQPEEEREGFDAAFV 250 A V K + + E E Q V P V +++ QE Q E + + A Sbjct: 1104 ATVEKEEKAKVETEKTQEV------------PKVTSQVSPKQE---QSETVQPQAEPARE 1148 Query: 251 HSETETALTGEILPNTNSDDESPAQSSDNAGMTPVDEAGAD-------EVPASDAPASTD 303 + T + NT +D E PA+ + + PV E+ E P + PA+T Sbjct: 1149 NDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQ 1208 Query: 304 PER 306 P Sbjct: 1209 PTV 1211
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.005 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 6/114 (5%) Query: 647 NKSLAEAQVLKAQLEAQADEKEREFDAYKLRVEDDFRRDELAQKLVIEQAEIAAKYGAQI 706 A+ + + + + R +K + + A+I Sbjct: 224 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 283 Query: 707 DIARLEVEQSRQRQDVEWAIERERLEAKRKKQIDEQRQMD--EAAKAQMMAELQ 758 +E + + E A + + + +R +D AK Q+ AE Q Sbjct: 284 K----TLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEAEHQ 333
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 30.1 bits (67), Expect = 0.041 Identities = 14/30 (46%), Positives = 21/30 (70%) Query: 662 ISELVKAEVEAEIDMARRLETVKEQASLSA 691 +SEL+K + E E+D RLE ++EQA +A Sbjct: 199 LSELIKQQRENELDQMERLEDMQEQAQANA 228
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.8 bits (80), Expect = 4e-04 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 121 GQLLMADEINRASPRTQSALLQAMQEYHITMAGQTYELPKPFHVLATQN-PLEQE 174 G L DEI Q+ LL+ +Q+ T G + ++A N L+Q Sbjct: 232 GGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQS 286
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 38.0 bits (88), Expect = 6e-05 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 7/180 (3%) Query: 49 AIANPLLTQEEREPLSTIVPVIVDRSQSQDVQDRPQMTDTALETLKDRLSRFPRIEPRIV 108 A+ P E EP P+ ++ V ++P+ ++ P+ + + V Sbjct: 60 AVQPPPEPVVEPEP--EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 117 Query: 109 EVRDDGESDSPSTQLFSALSSAVADVSPSRVGGAIFLSDGQIHDIPNALPNAEQALGFRA 168 E R ++ + + L+S+ A + S+ ++ + P QAL Sbjct: 118 ESRPASPFENTAP---ARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEG 174 Query: 169 PVHGLITGKADEFDRRIEIVRAPRFGIVNEEQQLTLRV--FDDGRPAGGGSAEVTVKMNG 226 V D ++I+ A + E + +R ++ G+P G + K+NG Sbjct: 175 QVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKING 234
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 38.4 bits (89), Expect = 2e-06 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 59 GWLYVQLLFVPETMRGKGTAAKLLAMAEEEARKRGCTGAYIDT--MNPDALRTYERYGFT 116 G+ ++ + V + R KG LL A E A++ G ++T +N A Y ++ F Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFI 147 Query: 117 RIGSL 121 IG++ Sbjct: 148 -IGAV 151
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 11/158 (6%) Query: 44 AASIAATFGLTVPQALQTGTAFFFGMLLGAAGFGRLADRYGRRRVLIVTVACDALFGVLS 103 + + A +G+ + + A G L+DR+GRR VL+V++A A+ + Sbjct: 38 SNDVTAHYGILL-------ALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIM 90 Query: 104 IFSPDFTILLILRFLTGAAVGGTLPVDYAMMAEFLPAKNRGRWLVFLEGFWAVGTLIVAL 163 +P +L I R + G G T V A +A+ R R F+ G +VA Sbjct: 91 ATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSA--CFGFGMVAG 147 Query: 164 AAWGASLAGVADAWRYIFAVTAFPAVLGLGLRFLVPES 201 G + G + + A A + L FL+PES Sbjct: 148 PVLGGLMGGFSPHAPFFAA-AALNGLNFLTGCFLLPES 184
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 59.6 bits (144), Expect = 2e-13 Identities = 26/105 (24%), Positives = 47/105 (44%) Query: 4 AHGRKKQPEIVRRSLLDCAAKLAADQGVAALSIQAVADAAGVTKGGLFHHFPSKQALLEA 63 A K++ + R+ +LD A +L + QGV++ S+ +A AAGVT+G ++ HF K L Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 64 VMADLLSALDAEIDALISQDCEAYGCFTRAYVKAVFDDRDRDSGR 108 + S + ++ R + V + + R Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERR 106
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 28.2 bits (63), Expect = 0.026 Identities = 8/14 (57%), Positives = 9/14 (64%) Query: 48 YHTALPRRYGFHGT 61 Y R+YGFHGT Sbjct: 168 YTKYKIRKYGFHGT 181
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 2e-11 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 6/110 (5%) Query: 1092 VLVAEDNDVNQIVFTQILQQAGLRFLIVGNGKKAVQAWEENNPAIILMDVSMPVMNGHQA 1151 +LVA+D+ + V Q L +AG I N + + +++ DV MP N Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 1152 TLAIRAAEQAAADGRHVPIIGVTAHTQEADRELCLQAGMDDYLSKPISPE 1201 I+ A +P++ ++A + G DYL KP Sbjct: 66 LPRIKKARP------DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLT 109 Score = 52.5 bits (126), Expect = 7e-09 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 917 IRVLVIDDNDVNRRILIEQLRTWGIDGHAVEDGPSGIAVLQEAASLGFSIDAIILDYHMP 976 +LV DD+ R +L + L G D + + + D ++ D MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG-----DLVVTDVVMP 58 Query: 977 VMNGLDVVERIRADERFDDIAIVFLT 1002 N D++ RI+ + D+ ++ ++ Sbjct: 59 DENAFDLLPRIK--KARPDLPVLVMS 82
>FLAGELLIN#Flagellin signature. Length = 507 Score = 153 bits (387), Expect = 1e-42 Identities = 85/565 (15%), Positives = 169/565 (29%), Gaps = 66/565 (11%) Query: 4 ILTNMAAMAALQTLRTIGANMADTQRQVSSGLRVQAAADNAAYWSISTTMRSDNMALSAV 63 I TN ++ L ++++ ++SSGLR+ +A D+AA +I+ S+ L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 SDALGLGAAKVDVAYAGMESTADVLS---EFRAKLVAAKEDGLDKGKIQTELDQLKDQLL 120 S G + + + L E + D IQ E+ Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SIATSASFNGVNWLNTNAPENLWELSSLPTSITSSFIRSADGSVRVGTTDIDVADVSLFN 180 ++ FNGV L+ + + + ++ + IDV + L Sbjct: 124 RVSNQTQFNGVKVLSQD------------NQMKIQVGANDGETITIDLQKIDVKSLGLDG 171 Query: 181 VGGGGALQKDIRSLGDIGGFREGEFTGIGNIGFQQFVFTGPFTFGAADHISFDLLLDASD 240 G + + L G T + A Sbjct: 172 FNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDT---------TAPT 222 Query: 241 LSAGVSYTVTL-DKTLVDAALGRPDGVINDALDFSFVLGTAFDAAGIPAGSVARSFSGAY 299 + V T DA + + A I G +F Sbjct: 223 VPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKG 282 Query: 300 SQYTIGSREG-TGEPGASVAVSNVISSFAPGNHGAGLENAPYYSLENDYPQWSFGFSGPF 358 +TI ++ G G S ++ + + AG N +L+ Sbjct: 283 VTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAANVDAATLQ-------------- 328 Query: 359 TVYRDVEFSFDIQVGNDAPVSISVTRDMVDTALGTSDGKINSAADMATVLDLALEGKGLN 418 S + + + + SD + N+A + + + N Sbjct: 329 --------SSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTAN 380 Query: 419 VSASGAAVVFDIDKTLYPLAARRSFMQISNVSDNLGPAPDFDILDVDITDPANDLDHYLS 478 + + + D I + + L+ Sbjct: 381 AAGDKVTLA-----------------GKTMFIDKTASGVSTLINEDAAAAKK-STANPLA 422 Query: 479 GVDTMLQKVISGAAALGTVKTRIDMQESFMRTLMDSIDKGIGRLVDADMNESSTRLKALQ 538 +D+ L KV + ++LG ++ R D + + + +++ R+ DAD + + Q Sbjct: 423 SIDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQ 482 Query: 539 TQEQLAIQSLQIANSNAENMMMLFR 563 +Q L AN +N++ L R Sbjct: 483 ILQQAGTSVLAQANQVPQNVLSLLR 507
>PF07132#Harpin protein (HrpN) Length = 356 Score = 31.2 bits (70), Expect = 0.004 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 2 SATTTVAGAGGAIAGGWLGRVIGGLAGSLAGPGGTAVGAWIGGQVGAMAGRAAASAIASY 61 TT+ G + GG LG +GGL SL G GG +G +GG +G+ G SA+ Sbjct: 53 DIMTTMMFMGSMMGGG-LGGGLGGLGSSLGGLGGGLLGGGLGGGLGSSLGSGLGSALGGG 111 Query: 62 MEGA 65 + GA Sbjct: 112 LGGA 115
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 29.5 bits (66), Expect = 0.032 Identities = 10/44 (22%), Positives = 21/44 (47%) Query: 378 SSDLDNDSIMILMNHNAEAYVRVFQQVNRIFDNPEEYENDIPVI 421 +S +DN +++I+ + + F+ I+ PE Y + I Sbjct: 10 NSPVDNKNVVIVRARKTNTFFKAFKVAPNIWVAPERYYGEPLDI 53
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.6 bits (66), Expect = 0.042 Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 39/165 (23%) Query: 503 DPTQICEPFVPTTVPTPPAPQTPPPG-----------------SKGSTPSGNSGGSSHSG 545 +P P P P P P + + ++ Sbjct: 72 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 131 Query: 546 TTKTGSASASTATSATAAANHRPRNFALIEKNRRAKTTFPA---------------TPSS 590 + +A+A+T+ T+ A+ R + +PA + Sbjct: 132 RLTSSTATAATSKPVTSVASG-------PRALSRNQPQYPARAQALRIEGQVKVKFDVTP 184 Query: 591 SGRAFGAFITSCLPDDAEHRADRKFDFEWQLEWWRRMTDIPVHVI 635 GR I S P + R + W+ E + + I V+++ Sbjct: 185 DGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNIL 229
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.5 bits (92), Expect = 1e-06 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 79 RHTVEHSVYVHMDHRGKGVAEALMQALIGRARAIGKHVMIAGIESRNVASIRLHEKLGF 137 +E + V D+R KGV AL+ I A+ ++ + N+++ + K F Sbjct: 89 YALIED-IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 85.3 bits (211), Expect = 2e-20 Identities = 81/348 (23%), Positives = 138/348 (39%), Gaps = 11/348 (3%) Query: 10 ITLLFVATLTIMAGTTVAPSLPAIEQSFLSTPHVGLLSRMVLTLPSVFVALCAPVAGMLA 69 I +L L + + P LP + + + + V ++L L ++ CAPV G L+ Sbjct: 8 IVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALS 67 Query: 70 DRFGRKRLLLGAILLYSLSGMSGLFADSLAGLLVGRAFLGLAIGGIMTIGTALVGDYFES 129 DRFGR+ +LL ++ ++ A L L +GR G+ G + A + D + Sbjct: 68 DRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDG 126 Query: 130 PARERYLGLQQAFTQLGGVLFVVAGGLLADIHWRAPFAVYAV-ALLILPAALLFLREPER 188 R R+ G A G V V GGL+ APF A L L E + Sbjct: 127 DERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHK 186 Query: 189 GDGRARDGGPAGAVNWPVVAVLALTVFLVNALFYTI--PSQLPFFLRELGV-----FSGS 241 G+ R + A V + A+F+ + Q+P L + + + Sbjct: 187 GERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT 246 Query: 242 IAGYAIGIFNLAGALT-ALNFARLRRHMGVAIILAVGLMLMATGFALLAMAKGLASMLSA 300 G ++ F + +L A+ + +G L +G++ TG+ LLA A Sbjct: 247 TIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPI 306 Query: 301 VAVTGLGLGVVMPAIMSTTIMLAPLRLRGRIAGIVTASMFLGHFISPL 348 + + G G+ MPA+ + +G++ G + A L + PL Sbjct: 307 MVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.6 bits (162), Expect = 9e-16 Identities = 29/162 (17%), Positives = 70/162 (43%), Gaps = 9/162 (5%) Query: 11 KRTRIQ-EEKQEAILEAALSVFSINGFRGSTIDQIAEAAGMSKPNVLYYFRTKEAMHRAL 69 ++T+ + +E ++ IL+ AL +FS G +++ +IA+AAG+++ + ++F+ K + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 70 IERVLDTWLDPLRAFDAE--GNPESEIRSYIRRKLEMSRDFPRESRLFA-----NEILQG 122 E + + A+ G+P S +R + LE + R L E + Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 123 APHIEDELKGPLKQLVDEKAEVIRAWVKAGRIAK-CDPYHLI 163 ++ + + D + ++ ++A + Sbjct: 123 MAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAA 164
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.041 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 321 VIEAIGHFDPVTFDPVLVGRVRSAAERLGYSHMDIISG 358 +++A+G DP P+L G+VR G+ ++ SG Sbjct: 803 LVQALG-ADPGKSSPMLEGQVRDWLNENGWEYLRETSG 839
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 50.1 bits (120), Expect = 1e-08 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 16/95 (16%) Query: 4 TIIKNGTIVTADLTYKADVKIEGGRITEIG----PDLTGGT---------VLDATGCFVM 50 T+I N I+ KAD+ ++ GRI IG PD+ G V+ G V Sbjct: 70 TVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEVIAGEGKIVT 129 Query: 51 PGGIDPHVHLEMPFMGTYSADDFESGTRAALAGGT 85 GG+D H+H P + SG L GGT Sbjct: 130 AGGMDSHIHFICP---QQIEEALMSGLTCMLGGGT 161
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 2e-08 Identities = 47/257 (18%), Positives = 93/257 (36%), Gaps = 25/257 (9%) Query: 102 DSLVLQKSQLEANKAKAEASVTQSKAQVLEAQANLNDAVRQRDRAARLGQSGSGSVSETE 161 + ++KS+L+ + +K VLE + +A + Q E+E Sbjct: 228 NLSRVEKSRLDDFSSLLHKQAI-AKHAVLEQENKYVEA--VNELRVYKSQLEQ---IESE 281 Query: 162 KTEAAAQVAQARLDAAKQAVSA---GEADIKVVDAQIDDIDLKLTRTGVKTPVAGIVSAK 218 A + + + +I ++ ++ + + + ++ PV+ V Sbjct: 282 ILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQL 341 Query: 219 NAKVGAIASGAGNPLFTVI-KDGAIELVADLSETDIQKVKAGQKAYLTV-AGGATK---I 273 L ++ +D +E+ A + DI + GQ A + V A T+ + Sbjct: 342 KVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYL 401 Query: 274 EGKVRLVSPTVDPTTRLGSVH---VVLPENS--------PARSGMYASAEVIVEETNALA 322 GKV+ ++ RLG V + + EN P SGM +AE+ + ++ Sbjct: 402 VGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVIS 461 Query: 323 LPLSAVTSGRDGSTTRR 339 LS + S R Sbjct: 462 YLLSPLEESVTESLRER 478 Score = 38.3 bits (89), Expect = 4e-05 Identities = 19/151 (12%), Positives = 51/151 (33%), Gaps = 9/151 (5%) Query: 56 IIATGTIRPVDEIY-VQPLVDGLSIDTLNADIGDRVEANAVLAVLSSDSLVLQKSQLEAN 114 A G + ++P+ + + + + + G+ V VL L++ EA+ Sbjct: 84 ATANGKLTHSGRSKEIKPIENSIVKEIIVKE-GESVRKGDVLLKLTA-------LGAEAD 135 Query: 115 KAKAEASVTQSKAQVLEAQANLNDAVRQRDRAARLGQSGSGSVSETEKTEAAAQVAQARL 174 K ++S+ Q++ + Q + +L E+ + + + Sbjct: 136 TLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQF 195 Query: 175 DAAKQAVSAGEADIKVVDAQIDDIDLKLTRT 205 + E ++ A+ + ++ R Sbjct: 196 STWQNQKYQKELNLDKKRAERLTVLARINRY 226
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 624 bits (1612), Expect = 0.0 Identities = 260/1064 (24%), Positives = 471/1064 (44%), Gaps = 71/1064 (6%) Query: 4 SAWSIRNPIAPLLGFALLMILGMQAFKTLPITRFPNIDVPVVAVTVTQSGASPSELEMQV 63 + + IR PI + +LM+ G A LP+ ++P I P V+V+ GA ++ V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 TKEIEDAVAAISGVDEIQSTVV-DGQSTTTVVFRIEKRTEEAVQDTKDAIDKIRSDLPAD 122 T+ IE + I + + ST G T T+ F+ + A ++ + LP + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 123 IEEPIVSKIDVEGQAIQTFAVSS--PNMTLEELSWFVDDTIKRSLQGQSGIGKVDRYGGA 180 +++ +S + S P T +++S +V +K +L +G+G V +G Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA- 180 Query: 181 DREVRVSLSPEKLDAYGITASEVNTQLRGTNIDLGSGRGQIGGN--------EQTIRTLG 232 +R+ L + L+ Y +T +V QL+ N + +G Q+GG +I Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAG--QLGGTPALPGQQLNASIIAQT 238 Query: 233 DTRDVSQLANTTIALS-NGRFVKLSELGTVTDTYQEQKSFSRFNGNPAVTFAVFRSKGAS 291 ++ + T+ ++ +G V+L ++ V + +R NG PA + + GA+ Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 292 EVSVAETVAESLAKVRKDHP-DVSIEMVDDAVYFTYGNYKAALDTLIEGAILAVIVVLLF 350 + A+ + LA+++ P + + D F + + TL E +L +V+ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 351 LRNWRATLIAAVALPLSAIPTFWIMDIMGFSLNLVSFLALTLATGILVDDAIVEIENIAR 410 L+N RATLI +A+P+ + TF I+ G+S+N ++ + LA G+LVDDAIV +EN+ R Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 411 HIKMGKT-PYRAALEAADEIGLAVIATSFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSV 469 + K P A ++ +I A++ + + AVF+P++F G G + QF +T+ ++ Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 470 FFSLAVARLITPLMAAYLMRAEDAMDDHHDNDSRLMKAYTRMVSATTR------KWWA-- 521 S+ VA ++TP + A L++ A +HH+N + + Sbjct: 479 ALSVLVALILTPALCATLLKPVSA--EHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGS 536 Query: 522 RYLTLIGAIGFLVASVILLAGVPGSFLPPDDASRVTLSVELPPNATLDETDRTTTEI--Y 579 L+ + V+L +P SFLP +D ++LP AT + T + ++ Y Sbjct: 537 TGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDY 596 Query: 580 HAIRDINGVESVFILGGASPKGDLELRRATVNVILQHIDHSLLKTLVNKGLGSIPLIGQY 639 + + VESVF + G S G N G+ + L Sbjct: 597 YLKNEKANVESVFTVNGFSFSGQ----------------------AQNAGMAFVSLK--- 631 Query: 640 LPKVEEKGRLRPQWDVERDIFAKVRGIPDVRIIKLNDRAEREL-SFNFLSSNEKD----- 693 P E G V ++ I D +I N A EL + D Sbjct: 632 -PWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLG 690 Query: 694 ---LNDAVGILESRLRASPI-LANVSSEGALPRPELQIRPRKDEIARLGITPQQISQTVR 749 L A L P L +V G + ++ +++ LG++ I+QT+ Sbjct: 691 HDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTIS 750 Query: 750 VATIGDIDAQLTKISLDDRQIPIRVQASLDTRRDLATIRALKIKTASGSLVPLYSVADID 809 A G + R + VQA R + L +++A+G +VP + Sbjct: 751 TALGG---TYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSH 807 Query: 810 YAEGPSSIKRNDRNRVVSIGSDVPFGTALDTSTAEFKRIVEETKLPASVRLAESGDAKVQ 869 + G ++R + + I + GT+ + A + + +KLPA + +G + + Sbjct: 808 WVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENL--ASKLPAGIGYDWTGMSYQE 865 Query: 870 GEMQQGFVNAMLLGLMLVLVVLILLFKDVIQPFTILFSLPLAIGGVAVALIITQNALSMP 929 + + ++V + L L++ P +++ +PL I GV +A + + Sbjct: 866 RLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY 925 Query: 930 VLIGILMLMGIVTKNAILLVDFAIE-MRRHGMERVHAMIEAGRKRARPIIMTSIAMSAGM 988 ++G+L +G+ KNAIL+V+FA + M + G V A + A R R RPI+MTS+A G+ Sbjct: 926 FMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGV 985 Query: 989 LPSALGVGEGGSFRAPMAIAVIGGIIVSTVLSLIVVPAFFLIMD 1032 LP A+ G G + + I V+GG++ +T+L++ VP FF+++ Sbjct: 986 LPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 1102 bits (2853), Expect = 0.0 Identities = 503/570 (88%), Positives = 538/570 (94%), Gaps = 1/570 (0%) Query: 1 MPYKISRAAYAGMFGPTVGDKVRLADTELFIEIEKDHTTYGEEVKFGGGKVIRDGMGQSQ 60 M Y++SRAAYA MFGPTVGDKVRLADTELFIE+EKD TT+GEEVKFGGGKVIRDGMGQSQ Sbjct: 1 MSYRMSRAAYANMFGPTVGDKVRLADTELFIEVEKDFTTHGEEVKFGGGKVIRDGMGQSQ 60 Query: 61 ATRAEGAVDTVITNVVIVDHSGIYKADVGLKNGRIHAIGKAGNPDTQPGVTIIVGPSTEA 120 TR GAVDTVITN +I+DH GI KAD+GLK+GRI AIGKAGNPD QPGVTIIVGP TE Sbjct: 61 VTREGGAVDTVITNALILDHWGIVKADIGLKDGRIAAIGKAGNPDMQPGVTIIVGPGTEV 120 Query: 121 IAGEGRILTAGGMDAHIHYICPQQIEEALMSGVTCMLGGGSGPAHGTLATTCT-GAWHIE 179 IAGEG+I+TAGGMD+HIH+ICPQQIEEALMSG+TCMLGGG+GPAHGTLATTCT G WHI Sbjct: 121 IAGEGKIVTAGGMDSHIHFICPQQIEEALMSGLTCMLGGGTGPAHGTLATTCTPGPWHIA 180 Query: 180 RMIESFDAFPMNLALAGKGNASLPAPLEEMILAGASSLKLHEDWGTTPAAIDNCLTVADE 239 RMIE+ DAFPMNLA AGKGNASLP L EM+L GA+SLKLHEDWGTTPAAID CL+VADE Sbjct: 181 RMIEAADAFPMNLAFAGKGNASLPGALVEMVLGGATSLKLHEDWGTTPAAIDCCLSVADE 240 Query: 240 YDVQVMIHTDTLNESGFVEDTVAAIRGRTIHAFHTEGAGGGHAPDIIKVCGNPNVIPSST 299 YDVQVMIHTDTLNESGFVEDT+AAI+GRTIHA+HTEGAGGGHAPDII++CG PNVIPSST Sbjct: 241 YDVQVMIHTDTLNESGFVEDTIAAIKGRTIHAYHTEGAGGGHAPDIIRICGQPNVIPSST 300 Query: 300 NPTRPYTVNTLAEHLDMLMVCHHLSPSIPEDIAFAESRIRKETIAAEDILHDIGAFSIIS 359 NPTRPYTVNTLAEHLDMLMVCHHLSP+IPEDIAFAESRIRKETIAAEDILHDIGAFSIIS Sbjct: 301 NPTRPYTVNTLAEHLDMLMVCHHLSPTIPEDIAFAESRIRKETIAAEDILHDIGAFSIIS 360 Query: 360 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEEVGENDNFRVRRYIAKYTINPAIAQGVS 419 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEE G+NDNFRV+RYIAKYTINPAIA G+S Sbjct: 361 SDSQAMGRVGEVAIRTWQTADKMKRQRGRLKEETGDNDNFRVKRYIAKYTINPAIAHGLS 420 Query: 420 HEIGSVEVGKRADLVLWNPAFFGVKPEMVLLGGSIAAAPMGDPNASIPTPQPMHYRPMFA 479 HEIGS+EVGKRADLVLWNPAFFGVKP+MVLLGG+IAAAPMGDPNASIPTPQP+HYRPMF Sbjct: 421 HEIGSLEVGKRADLVLWNPAFFGVKPDMVLLGGTIAAAPMGDPNASIPTPQPVHYRPMFG 480 Query: 480 AYGKLRTNSSVTFVSQASLDVGLAQRLGVAKKLLAVKNVRGGISKASMIHNSLTPHIEVD 539 AYG+ RTNSSVTFVSQASLD GLA RLGVAK+L+AV+N RGGI KASMIHNSLTPHIEVD Sbjct: 481 AYGRSRTNSSVTFVSQASLDAGLAGRLGVAKELVAVQNTRGGIGKASMIHNSLTPHIEVD 540 Query: 540 PETYEVRADGELLTCEPATVLPMAQRYFLF 569 PETYEVRADGELLTCEPATVLPMAQRYFLF Sbjct: 541 PETYEVRADGELLTCEPATVLPMAQRYFLF 570
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 28.9 bits (64), Expect = 0.042 Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 218 AIAGLPAGTTKPANGSAAGFSLLFIAEGGFALGDAVGGGGRE--FVVPARGIYLVTLSLA 275 A+ L T + + A G GG G AV GG F G Y V +S + Sbjct: 249 AVVHLQRATIRRGDAPAGG-----AVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGS 303 Query: 276 VVSSSGHRVTLFVNGAAASFGIAGNASTAGSSQSATSLLALETGDRLRLQH 326 V + V GAA G + +G S SA +ETG R Sbjct: 304 SVELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPHGNVIETGGARRFAP 354
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 26.8 bits (59), Expect = 0.012 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 34 LIIIDHTGVPDALRGRGVGQALAAHAIDEAR 64 +I+ V R +GVG AL AI+ A+ Sbjct: 89 YALIEDIAVAKDYRKKGVGTALLHKAIEWAK 119
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.5 bits (196), Expect = 2e-19 Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 2 RVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGYE 61 +L+ +DD+A + L ++V T D D+++ D+ +PD + ++ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARI-HAIVRRSK 120 +L ++ ++ P+L++S ++ GA DY+ KPF EL+ I A+ + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHAQ 124 ++ Sbjct: 125 RPSK 128
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 37.7 bits (87), Expect = 8e-05 Identities = 43/247 (17%), Positives = 91/247 (36%), Gaps = 19/247 (7%) Query: 169 AATRDLEAEQAKQSATRFRKEGETASRELQDVAARNKEAMSAVARESRKVARLEEQVATL 228 + T + AE +KQ + K E ++ + A+N+E A+ + K +VA Sbjct: 1034 SETTETVAENSKQES----KTVEKNEQDATETTAQNREVAKE-AKSNVKANTQTNEVAQS 1088 Query: 229 MAKNADLDTMLTLRNQEAARLKEQLAAAGGRENDMIIRLPNPAVPAEKAAPPPQ-QPAPA 287 ++ + T T + A KE+ A + + ++ + P ++ + Q Q PA Sbjct: 1089 GSETKETQT--TETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPA 1146 Query: 288 PEAAPAIAADAGQAATE---------EESPALPVVEEPTAPQPNGLEQEIEDIRNQGTAL 338 E P + Q+ T +E+ + + N +E+ N A Sbjct: 1147 RENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPAT 1206 Query: 339 TERLLNVRGTGNDEPIRREIARIAAEMIALTAAREGEKSPIP--ELLAKASGSSGRESLA 396 T+ +N + + R R + ++S + +L + + + ++ A Sbjct: 1207 TQPTVNSESSNKPKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARA 1266 Query: 397 KRAKVVM 403 K V + Sbjct: 1267 KAQFVAL 1273
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 4e-04 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 32 VVLVGPSGCGKSTLLRMIAGLETVTSGDISISNRVVNEIEPKDRDIAMVFQNYALY 87 VVL G G GKSTL+ + GL+ + I +D Y Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI---------GTGKDSYEQIAGIVAY 645
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 71.2 bits (174), Expect = 2e-17 Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 19/207 (9%) Query: 21 RRPRRSAEETRRDILAKAEELFRERGFNAVAIADIAAALGMSPANVFKNFSSKNALVDAI 80 R+ ++ A+ETR+ IL A LF ++G ++ ++ +IA A G++ ++ +F K+ L I Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 81 A---FEQIGAFERDI---RPLDKNHAPLSRLRHLARTLMEQHHQDL------NDNPYIFE 128 IG E + P D L H+ + + + + L + ++ E Sbjct: 63 WELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGE 122 Query: 129 MILMTAKQDMKCGDYYKAVIASLLADIISDGIDAG-IYAPADIPPLAETVLHALTSVIHP 187 M ++ Q C + Y + + I+A + A A + ++ ++ Sbjct: 123 MAVVQQAQRNLCLESY-----DRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN 177 Query: 188 VLIAREDIGNLATRCDQLVDLIDAGLR 214 L A + +L V ++ Sbjct: 178 WLFAPQSF-DLKKEARDYVAILLEMYL 203
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.1 bits (117), Expect = 2e-08 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 20/132 (15%) Query: 69 EIRPRVTGIIREIPFKEGSEVKQGDILYQIEDNTYLAEVAQAKANVAKAEASIPSAQANL 128 EI+P I++EI KEG V++GD+L ++ A+A+ K ++S+ A+ Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTA-------LGAEADTLKTQSSLLQARLEQ 150 Query: 129 ARYERLVNS----GATQIEYENAKVTLLQAEADVAQTKAAL---------ETAEINLDLT 175 RY+ L S +++ + +E +V + + + + + L+L Sbjct: 151 TRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLD 210 Query: 176 KVRAPFDGITSA 187 K RA + + Sbjct: 211 KKRAERLTVLAR 222 Score = 43.3 bits (102), Expect = 1e-06 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 9/98 (9%) Query: 105 AEVAQAKANVAKAEASIPSAQANLARYERLVNSGATQIEYENAKVTLLQAEADVAQTKAA 164 E+ K+ + + E+ I SA+ TQ+ L Q ++ Sbjct: 266 NELRVYKSQLEQIESEILSAKEEYQL--------VTQLFKNEILDKLRQTTDNIGLLTLE 317 Query: 165 LETAEINLDLTKVRAPFDGITSA-TAFSIGNVVTANQT 201 L E + +RAP + G VVT +T Sbjct: 318 LAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAET 355
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1118 bits (2893), Expect = 0.0 Identities = 582/1031 (56%), Positives = 742/1031 (71%), Gaps = 5/1031 (0%) Query: 1 MAHFFIRRPVFAWVIAIVIMLGGALAIATLSISQYPDIAPTTVRVSATYNGASAETVEKS 60 MA+FFIRRP+FAWV+AI++M+ GALAI L ++QYP IAP V VSA Y GA A+TV+ + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VTTIIEDGMTGLDDLTYMTSSS-STGSAEVTLTFGNSIMPDIAQVQVQNKLQLVQSQLPD 119 VT +IE M G+D+L YM+S+S S GS +TLTF + PDIAQVQVQNKLQL LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 120 TVQQQGIQVSRSTSSILMVGALISTDGKRNSADLGDVFSSRVEDQIKRLEGVGSINVFGS 179 VQQQGI V +S+SS LMV +S + D+ D +S V+D + RL GVG + +FG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 180 EYAMRIWLDPFKLNKYQLTTADVTSAIESQNTQVSVGSLGAVPAVKGQQLNVTVTAQSQL 239 +YAMRIWLD LNKY+LT DV + ++ QN Q++ G LG PA+ GQQLN ++ AQ++ Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 240 TTVADFESVILKVEKDGATVRLSDVARIEIGQETYGGDSRSNGRPSAGFAVNLATGANAL 299 +F V L+V DG+ VRL DVAR+E+G E Y +R NG+P+AG + LATGANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 300 DTAARVKAALANVEGSLPEGVAIEYPYDTTPFVKLSIEKVVHTLIEAIILVFVVLLVFLQ 359 DTA +KA LA ++ P+G+ + YPYDTTPFV+LSI +VV TL EAI+LVF+V+ +FLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 360 NLRATFIPMIAVPVVLLGTFGILALTGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIM 419 N+RAT IP IAVPVVLLGTF ILA GYSINTLTMF MVLAIGLLVDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 420 SEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFFGGSTGIIYRQFSVTIVSAMLL 479 E+ L P EATEKSM +I GA++GIA+VL+AVFIPMAFFGGSTG IYRQFS+TIVSAM L Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 480 SAVVAIVLTPALCATMLKPI--DHHKKQRGPGAWFNRGFGKTTDGYVSSIGYLLKRPLRV 537 S +VA++LTPALCAT+LKP+ +HH+ + G WFN F + + Y +S+G +L R Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 538 MIIFAIVIGGCAWFFSKLPSSFLPQEDQGVLLTIIQTPTGSNIERTNEVVKQVESYFREK 597 ++I+A+++ G F +LPSSFLP+EDQGV LT+IQ P G+ ERT +V+ QV Y+ + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 EAANVESVFGVLGFSFSGSGQNNAIVFTKLKDFSERTAPDQHAGAIVQRAMGTFFGFRDA 657 E ANVESVF V GFSFSG QN + F LK + ER + A A++ RA RD Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 658 QVFPLLPPAIQGMGTSSGFSMYLVDSGRNGTDALTASSKELIALATGNP-KISSLRSDSQ 716 V P PAI +GT++GF L+D G DALT + +L+ +A +P + S+R + Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 717 DNETQMKIILDQEKMGAMGVDLSSVNLMLSTIFAGRDVNDFTLNGELKPVYVQGDAPYRM 776 ++ Q K+ +DQEK A+GV LS +N +ST G VNDF G +K +YVQ DA +RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 777 QPDDLKFWYARNTNGEMVPFSSFSEVKWINAPPSLARFNGTGAISLEGTAGAGVASGEAM 836 P+D+ Y R+ NGEMVPFS+F+ W+ P L R+NG ++ ++G A G +SG+AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 837 DEMERLTASLPGGYTVAWQGISYQERLSGSQAPMLYALSVLIVFLCLAALYESWSIPFSV 896 ME L + LP G W G+SYQERLSG+QAP L A+S ++VFLCLAALYESWSIP SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 897 ILAVPVGVLGALTAAHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKERQEH-GLSLV 955 +L VP+G++G L AA F Q NDVYF VGLLTTIGL+AKNAILIVEFAK+ E G +V Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 956 EAALEAAKLRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFF 1015 EA L A ++RLRPI+MTSLAFILGV+PLAI+ GAGS AQNA+GIGV+GGM+SATLL IFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1016 VPSFFVIIRRL 1026 VP FFV+IRR Sbjct: 1021 VPVFFVVIRRC 1031
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 54.0 bits (129), Expect = 4e-10 Identities = 87/357 (24%), Positives = 135/357 (37%), Gaps = 45/357 (12%) Query: 70 EQCQDKATTLAAAGTPVAMAYVGSRTLKQFAQNDLIVPVPMTEDEKKSYYPNIVDTVTFE 129 ++ ++K +AA G + + +AQ+ L+ + + + YP D V + Sbjct: 67 DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYN 126 Query: 130 DTQWGVPVAFSTKALYWNKDLFKQAGLDPEVPPKTWAEEIAFAKQIKEKTGIAGYGLPAK 189 P+A +L +NKDL PPKTW E A K++K K G A Sbjct: 127 GKLIAYPIAVEALSLIYNKDLLPN-------PPKTWEEIPALDKELKAK------GKSAL 173 Query: 190 TFDNTMHQFMHWVYT----------NNGKVIDGDKITVDSPQVVAALTAYKD-ITPYSVE 238 F N + W NGK D + VD+ A LT D I + Sbjct: 174 MF-NLQEPYFTWPLIAADGGYAFKYENGKY-DIKDVGVDNAGAKAGLTFLVDLIKNKHMN 231 Query: 239 GPTAYEQNEIRAIFLDGKVGMIQAGSGAATRLQETKINWGIATLPL---GPEAKGPGTLL 295 T Y E A F G+ M G A + + +K+N+G+ LP P G L Sbjct: 232 ADTDYSIAE--AAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVL- 288 Query: 296 ITDSLAIFKGTGVEEKATEFAK--FITSPGPQGEYELQGGAGLTPLRPSA--KVDEFVAK 351 S I + +E A EF + +T G L+ PL A +E +AK Sbjct: 289 ---SAGINAASPNKELAKEFLENYLLTDEG------LEAVNKDKPLGAVALKSYEEELAK 339 Query: 352 DPFWKPLIDGIAYGGPEPLFTDYKGFQDVMIEMVQSVVTGKATPEDAAKKASSALEQ 408 DP ++ G P F + V + +G+ T ++A K A + + + Sbjct: 340 DPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITK 396
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 0.003 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 7/97 (7%) Query: 29 HRITGGALYFGTLLVAWWLIAIASGPAYYDWVNWAMGTIIGRLI----LIGYTWALVHHM 84 I A+ L++ + W+ MG II R++ +IG W + + Sbjct: 41 SMIFNIAISLMGLVLTHAYRSF---IKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTS 97 Query: 85 LGGLRHFMWDLGYGFEKHFTTKLAKASWVVSICLTAL 121 + L F+ F + VV+ + L Sbjct: 98 IWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLL 134
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.0 bits (75), Expect = 0.002 Identities = 27/139 (19%), Positives = 43/139 (30%), Gaps = 11/139 (7%) Query: 43 DDKTPASPVKPGAPETKPEAVATGNPAPVWDQPKKTPIEPEPNVGKADSAAAGPKAESIG 102 P S + +P P PV EPEP A E Sbjct: 45 APAQPISVTMVAPADLEPPQAVQPPPEPV------VEPEPEPEPIPEPPKEAPVVIE--- 95 Query: 103 DKQKEPVSSVPVPPKADAKPTADTAGA-SAAATAAAASKPAFGATASAGTSGNASAAKPS 161 K K P P K +P D S A+ + PA +++A + + + Sbjct: 96 -KPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVA 154 Query: 162 ATTPSSGPAKPSTPPQAER 180 + + +P P +A+ Sbjct: 155 SGPRALSRNQPQYPARAQA 173
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 33.8 bits (77), Expect = 0.001 Identities = 30/105 (28%), Positives = 33/105 (31%), Gaps = 8/105 (7%) Query: 431 EGPVEDLTIENAIAAAPARAEPVAKTIVVEAAPEPRTEPRPAPATPIEVAPTVSVPKEKK 490 E P I + A P A E EP EP P P P E AP V + K Sbjct: 42 ELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE-APVVIEKPKPK 100 Query: 491 PVT-------IEAPVETEAADEKAEAVPFFGGAPDDPGVKKPGAE 528 P +E P E A PF AP P A Sbjct: 101 PKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAA 145
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 47.5 bits (113), Expect = 4e-08 Identities = 59/314 (18%), Positives = 128/314 (40%), Gaps = 15/314 (4%) Query: 53 LGLIGLFQFLPSLLLILVTGTVADRHNRRRIMAICLLIAALCAVALLGLTLAHRFSPWPV 112 L L L QF + +L G ++DR RR ++ + L AA V + A W + Sbjct: 49 LALYALMQFACAPVL----GALSDRFGRRPVLLVSLAGAA---VDYAIMATAPFL--WVL 99 Query: 113 FAILVVFGIERAFMGPAVQSLAPNLVPVEDLPNAIAWNSSSWQMASILGPVAGGLLYGLG 172 + +V GI A G + ++ ++ + S+ + + GPV GGL+ G Sbjct: 100 YIGRIVAGITGA-TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFS 158 Query: 173 ASVAYSVAFVLFIVSAILAVTIRKPEQRGPAKAISLETM--LAGFKFISQEKIVLGAISL 230 + A L ++ + + +G + + E + LA F++ +V +++ Sbjct: 159 PHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV 218 Query: 231 DLFAVLLGGA-VALMPIFAKEVLTLGPWGLGLLRAAPGI-GAITVAVILAFKPIRHHAGL 288 L+G AL IF ++ +G+ AA GI ++ A+I R Sbjct: 219 FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERR 278 Query: 289 LMFVGVGLFGISTVVFGLSETAWLSIAALVVMGASDMVSVYVRETLIALWTPDEVRGRVN 348 + +G+ G ++ + W++ +V++ + + + + +++ +E +G++ Sbjct: 279 ALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPAL-QAMLSRQVDEERQGQLQ 337 Query: 349 AVNMVFVGASNELG 362 ++ +G Sbjct: 338 GSLAALTSLTSIVG 351 Score = 35.6 bits (82), Expect = 3e-04 Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 12/175 (6%) Query: 6 AENRFGAFRHSSYRRFFSARFFSAFAIQIVSVSVG--WQMYEVTGNAFYLGLIGL----F 59 A N +FR + +A F +Q+V W ++ + IG+ F Sbjct: 196 ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAF 255 Query: 60 QFLPSLLLILVTGTVADRHNRRRIMAICLLIAALCAVALLGLTLAHRFSPWPVFAILVVF 119 L SL ++TG VA R RR + + + IA LL + +P+ +L Sbjct: 256 GILHSLAQAMITGPVAARLGERRALMLGM-IADGTGYILL-AFATRGWMAFPIMVLLASG 313 Query: 120 GIERAFMGPAVQSLAPNLVPVEDLPNAIAWNSSSWQMASILGPVAGGLLYGLGAS 174 GI PA+Q++ V E ++ + SI+GP+ +Y + Sbjct: 314 GIGM----PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASIT 364
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 179 bits (455), Expect = 9e-51 Identities = 102/449 (22%), Positives = 188/449 (41%), Gaps = 92/449 (20%) Query: 1 MALRNIAIIAHVDHGKTTLVDELLKQSGSFRENQRVME--RVMDSNDIEKERGITILAKA 58 M + NI ++AHVD GKTTL + LL SG+ E V + D+ +E++RGITI Sbjct: 1 MKIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGI 60 Query: 59 TSIEWKDTRINIVDTPGHADFGGEVERILSMVDGAIVLVDAAEGPMPQTKFVVGKALKVG 118 TS +W++T++NI+DTPGH DF EV R LS++DGAI+L+ A +G QT+ + K+G Sbjct: 61 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 120 Query: 119 LRPIVAINKIDRPDARHEEVVNEVFDLFAA----------------------------LD 150 + I INKID+ V ++ + +A ++ Sbjct: 121 IPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNMCVTNFTESEQWDTVIE 180 Query: 151 ATDEQLD--------------------------FPILYGSGRSGWMNVNPEGPTDEGLAP 184 D+ L+ FP+ +GS ++ G+ Sbjct: 181 GNDDLLEKYMSGKSLEALELEQEESIRFHNCSLFPVYHGSAKNN-----------IGIDN 229 Query: 185 LLDLVVKHVPEPKVEEGPFRMIGTI--LEANNFLGRIITGRIASGSIKPNQAVKVLGQDG 242 L++++ G + G + +E + R+ R+ SG + +V++ ++ Sbjct: 230 LIEVITNKFYSS-THRGQSELCGKVFKIEYSEKRQRLAYIRLYSGVLHLRDSVRISEKEK 288 Query: 243 KLIENGRISKILAFRGIERTSIEEAHAGDIVAIAGLS---KGTVADTFCDPAVMEPMQAQ 299 +I+++ E I++A++G+IV + + DT P Sbjct: 289 I-----KITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLPQRERIENPL 343 Query: 300 PIDPPTVTMSFIVNDSPLAGTEGDKVTSRVIRDRLFKEAEGNVALKIEESADKDSFFVSG 359 P+ TV P + + + D L + ++ + L+ + +S Sbjct: 344 PLLQTTV--------EPSKPQQREML-----LDALLEISDSDPLLRYYVDSATHEIILSF 390 Query: 360 RGELQLAVLIENMRRE-GFELAVSRPRVV 387 G++Q+ V ++ + E+ + P V+ Sbjct: 391 LGKVQMEVTCALLQEKYHVEIEIKEPTVI 419 Score = 38.3 bits (89), Expect = 9e-05 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 395 QLMEPVEEVVIDVDEEHSGVVVQKMSERKAEMVELRPSGGNRVRLVFFAPTRGLIGYQSE 454 +L+EP I +E+ + A +V+ + N V L P R + Y+S+ Sbjct: 534 ELLEPYLSFKIYAPQEYLSRAYTDAPKYCANIVDTQ-LKNNEVILSGEIPARCIQEYRSD 592 Query: 455 LLTDTRGTAVMNRLFHDYQPYKGE 478 L T G +V Y GE Sbjct: 593 LTFFTNGRSVCLTELKGYHVTTGE 616
>SECGEXPORT#Protein-export SecG membrane protein signature. Length = 110 Score = 26.4 bits (58), Expect = 0.011 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 36 IILRQRGTQWHPGANVGIGKDHTIFALTAGNVNFRTKANG 75 +I+ Q+G GA+ G G T+F ++G+ NF T+ Sbjct: 19 LIMLQQGKGADMGASFGAGASATLFG-SSGSGNFMTRMTA 57
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 28.2 bits (63), Expect = 0.040 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 16/76 (21%) Query: 90 VLLPKVEQPADINDLADLLAEA---------DAPGRLKVWAMIETPFGVLNAASIADAAH 140 V+ P + ++ ++ E D ++V M+E P + A A Sbjct: 389 VMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVSDSIEVGIMVEIPSTAVAANLFAK--- 445 Query: 141 TPDARLAAFVIGLNDL 156 + F IG NDL Sbjct: 446 ----EVDFFSIGTNDL 457
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 24.7 bits (53), Expect = 0.027 Identities = 12/28 (42%), Positives = 20/28 (71%) Query: 11 EKPRRLSPAAERALKEAEERRRQKADLQ 38 EK R+ + AAE+A +EAE+RR++ + Sbjct: 137 EKARKEAEAAEKAFQEAEQRRKEIEREK 164
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 144 bits (364), Expect = 7e-47 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 3/150 (2%) Query: 7 AQGAVSPSLNILAQYIKDLSFENPGAPRSLQARDNAPSININVNVNANPISGSDFDVVLT 66 Q P L I Y+KD+SFE P P Q D P ++ +++ A + ++V L Sbjct: 12 TQATQQPVLQIQRIYVKDVSFEAPNLPHIFQQ-DWEPKLSFDLSTEAKQVGDDLYEVCLN 70 Query: 67 LNAEA--KDGDKVLFAAELVYGGVFRIAGFPQEHMLPVLFIECPRLLFPFARQIIADVTR 124 ++ E + V F E+ GVF I+G + M L +CP +LFP+AR++++ + Sbjct: 71 ISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLTSQCPNMLFPYARELVSSLVN 130 Query: 125 NGGFPPLMIDPIDFAQMFAQRVAEEQAKAK 154 G FP L + P++F +F + ++ + Sbjct: 131 RGTFPALNLSPVNFDALFMDYLQRQEQAEQ 160
>PF06580#Sensor histidine kinase Length = 349 Score = 28.3 bits (63), Expect = 0.043 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 89 ENRVAEALSRVKAGGLIVAAGSKEDGILTLRKTLTKLGIETESTPKYHGVAL 140 EN + ++++ GG I+ G+K++G +TL T + ++T + G L Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG-SLALKNTKESTGTGL 315
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 74.5 bits (183), Expect = 8e-16 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 18/137 (13%) Query: 415 IMGHVDHGKTSLLDAIRQANVVAGEAG------------------GITQHIGAYQVEKNG 456 ++ HVD GKT+L +++ + E G GIT G + Sbjct: 8 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN 67 Query: 457 QKITFIDTPGHAAFTAMRARGAQATDIAVLVVAADDSVMPQTIESINHAKAAGVPIVVAI 516 K+ IDTPGH F A R D A+L+++A D V QT + + G+P + I Sbjct: 68 TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFI 127 Query: 517 NKIDKHEANPEKVRQQL 533 NKID++ + V Q + Sbjct: 128 NKIDQNGIDLSTVYQDI 144
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 123 bits (309), Expect = 8e-32 Identities = 58/279 (20%), Positives = 106/279 (37%), Gaps = 29/279 (10%) Query: 212 RQVSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFN---------------GSISSST 256 + +++ L I QV ++ +AEV LG IS++ Sbjct: 331 NDLERVIAQLDIR-RPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAI 389 Query: 257 SNNGFEFANPSNLGNAISGASRIASGAIGSGSLNFATYLNAMEQAGVVRTLAEPSLTAIS 316 + + + + S S A G N+A L A+ + LA PS+ + Sbjct: 390 AGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLD 449 Query: 317 GEQAKFYVGGDFRLPAEQEVTIDKDTGQQTITRTTDTVDYGITLNFRPVVLSPGRISLKI 376 +A F VG + + T D T+ R GI L +P + + L+I Sbjct: 450 NMEATFNVGQEVPVLTGS-QTTSGDNIFNTVER----KTVGIKLKVKPQINEGDSVLLEI 504 Query: 377 ETNVSEPTYEGNVVTGNAGRNIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQDNIRQA 436 E VS + + + G + R + V + SG ++V+ GL+ ++ Sbjct: 505 EQEVSSVADAASSTSSDLG--------ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDT 556 Query: 437 MSGLPGISKVPIFGTLFRSKDFIRNETELVIIATPYLVR 475 +P + +P+ G LFRS ++ L++ P ++R Sbjct: 557 ADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIR 595
>PREPILNPTASE#Type IV prepilin cysteine protease (C20) family signature. Length = 290 Score = 43.6 bits (103), Expect = 9e-08 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 27/164 (16%) Query: 4 AAIFLTLPLCVAFAALNDLFSMTIPNRIPLILLLSFVVVAPLTGMDWQTFAMSIAAATAV 63 L L + DL M +P+++ L LL ++ L G + + ++ A A Sbjct: 134 TLAALLLTWVLVALTFIDLDKMLLPDQLTLPLLWGGLLFNLLGG--FVSLGDAVIGAMAG 191 Query: 64 FLVCF-------ALFAANAMGGGDAKLLTAATVWYGFNISLVEFLLAVTFLGGVLTIGIL 116 +LV + L MG GD KLL A W G+ + LL+ +G + IG++ Sbjct: 192 YLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS-LVGAFMGIGLI 250 Query: 117 LLRSRSQEIMAAGIPIPDSLLVAKKIPYGIGIAVAGL--LTYGD 158 LLR+ Q +K IP+G +A+AG L +GD Sbjct: 251 LLRNHHQ---------------SKPIPFGPYLAIAGWIALLWGD 279
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 73.3 bits (180), Expect = 2e-16 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 16/153 (10%) Query: 1 MSALARVLVVDDSPTMRGLISAVL-KADPEVEVVGQAGNAMEARAAIKQLNPDVVTLDIE 59 M+ A +LV DD +R +++ L +A +V + NA I + D+V D+ Sbjct: 1 MTG-ATILVADDDAAIRTVLNQALSRAGYDVRITS---NAATLWRWIAAGDGDLVVTDVV 56 Query: 60 MPEMNGLEFLEKIMRLRP-MPVIMVSSLTHRGADASLAALEIGAFDCVGKPAPGDARPFG 118 MP+ N + L +I + RP +PV+++S+ ++ A E GA+D + KP Sbjct: 57 MPDENAFDLLPRIKKARPDLPVLVMSA--QNTFMTAIKASEKGAYDYLPKPF-------- 106 Query: 119 DLADKVKAAARSQHAAYRAARPESAAAVQPTPV 151 DL + + R+ R + P+ Sbjct: 107 DLTELIGIIGRALAEPKRRPSKLEDDSQDGMPL 139
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 3e-24 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 6 KIKVLIVDDQVTSRLLLSDALTQLGFKQITAAGDGEQGLKIMEQQPHHLVISDFNMPKMD 65 +L+ DD R +L+ AL++ G+ + + + + LV++D MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 66 GLGFLHAVRA-NPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMRAAIE 122 L ++ P ++++AQ KA++ GA + L KPF + ++ I Sbjct: 62 AFDLLPRIKKARPDLP---VLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 385 bits (991), Expect = e-130 Identities = 139/576 (24%), Positives = 242/576 (42%), Gaps = 61/576 (10%) Query: 14 PQVLKNVAALGQTRLLMLGGVGVLSMALILAAALYVNRPAYETLYVGLEKSDLNKISIAL 73 P+ L+ + L + L G ++A+++A L+ P Y TL+ L D I L Sbjct: 10 PKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQL 69 Query: 74 AESGLDFQVGTDGASLQVPVGLTSKARLLLAERGLPDSANAGYELFDNVGSLGLTSFMQE 133 + + ++ +++VP + RL LA++GLP G+EL D G++ F ++ Sbjct: 70 TQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQ-EKFGISQFSEQ 128 Query: 134 VTRVRALEGEISRSIQQIDGVAAARVHIVMPDVGNFRRGEQKPTASVMIR--ASATAGRK 191 V RALEGE++R+I+ + V +ARVH+ MP F R ++ P+ASV + Sbjct: 129 VNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEG 188 Query: 192 ASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQEITTNI 251 +++ HLV+SAV GL +VTL+D +G LL + + L A +V+ I I Sbjct: 189 QISAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRI 248 Query: 252 DKALAPFLGMDNFRSSVTAQLNTDSRQIQETVYDPESRVERSVRTVKEDQK--------- 302 + L+P +G N + VTAQL+ +++ E Y P ++ ++ Sbjct: 249 EAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYP 308 Query: 303 -------SHETQPDTAATV---------EQNVPQAAPQGGGSGPQSSDESAKKEEQTNYE 346 S++ P A + QN PQ + + + S ++ E +NYE Sbjct: 309 GGVPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSN--SAGPRSTQRNETSNYE 366 Query: 347 INSKTVATVKNGYTVEKISVAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKIVTSAAGIS 406 ++ T N +E++SVAVVVN +A P+ + +++ + A G S Sbjct: 367 VDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLT----ADQMKQIEDLTREAMGFS 422 Query: 407 SDRGDVVTLTAMDFLETQLLDEAATGPGI-MEVLSRNSAGIINSLAFVAVAFLVIWLGVR 465 RGD + + F + + + P + L + VA+++ VR Sbjct: 423 DKRGDTLNVVNSPF--SAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVR 480 Query: 466 PLVRTVTGNGAAAGQLSQETAGLELPDFSPGMDAGAGGLMEGFGADFGFDSTDDLLAGGD 525 P + AA + A E A S D+ L Sbjct: 481 PQLTRRVEEAKAAQE-------------------QAQVRQETEEAVEVRLSKDEQLQQRR 521 Query: 526 SEGTFNRRVR-EGPERRLSRMVEISEERAAKILRKW 560 + N+R+ E +R+ M + A ++R+W Sbjct: 522 A----NQRLGAEVMSQRIREMSDNDPRVVALVIRQW 553
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 50.6 bits (121), Expect = 3e-08 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 5/119 (4%) Query: 1045 RVLCIDNEPKILEGMTLLLTGWGCEVLPTGSVATLEEPFLSLAAAPDVIIADYHLDDGDG 1104 +L D++ I + L+ G +V T + ATL A D+++ D + D + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWR--WIAAGDGDLVVTDVVMPDENA 62 Query: 1105 ISAIRLIRTFHGKAIPALLVTADRSPEVRSDAEKYGISVQHKPVKPAALRAYINQISSA 1163 + I+ +P L+++A + A + G KP L I I A Sbjct: 63 FDLLPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYL--PKPFDLTELIGIIGRA 118
>MECHCHANNEL#Bacterial mechano-sensitive ion channel signature. Length = 136 Score = 126 bits (318), Expect = 1e-40 Identities = 64/140 (45%), Positives = 85/140 (60%), Gaps = 12/140 (8%) Query: 1 MLNEFKTFIARGNVMDLAVGVIIGAAFSKIVDSVVNDLIMPIVGAIFGGFDFSNYFLPLS 60 ++ EF+ F RGNV+DLAVGVIIGAAF KIV S+V D+IMP +G + GG DF + + L Sbjct: 3 IIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTL- 61 Query: 61 SSVTATSLAAARDQGAVFAYGSFLTVLINFLILAWIIFLMVKGVNKLRDSVDRKKVEEKP 120 A V YG F+ + +FLI+A+ IF+ +K +NKL +K EE Sbjct: 62 ------RDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL-----NRKKEEPA 110 Query: 121 EAAPPPEDVKLLTEIRDLLK 140 A P ++ LLTEIRDLLK Sbjct: 111 AAPAPTKEEVLLTEIRDLLK 130
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 139 bits (351), Expect = 1e-40 Identities = 78/349 (22%), Positives = 140/349 (40%), Gaps = 51/349 (14%) Query: 1 MAVLVTGGAGYIGSHMVWALLDAGEEVVVVDRLSTG-------SRWAVA--PAARFYLGD 51 M LVTG AG+IG H+ LL+AG +VV +D L+ +R + P +F+ D Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 52 AADRAMLDQIFEENQIETIFHFAGSVSVPESISQPLEYYENNTGTTRALVAAAVAHGIRN 111 ADR + +F E +F ++V S+ P Y ++N ++ + I++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 112 FIFSSTAAVYG---NQPF--EGPVPETAILSPENPYGLSKLASEIMLRDVVQAHDFNYVA 166 +++S+++VYG PF + V P + Y +K A+E+M + Sbjct: 121 LLYASSSSVYGLNRKMPFSTDDSVDH-----PVSLYAATKKANELMAHTYSHLYGLPATG 175 Query: 167 LRYFNVAGADPQGRAGPSPTGVANLIKVACEAATGRRDRVEVYGTDYPTADGTGVRDYIH 226 LR+F V G P GR + + G+ ++VY G RD+ + Sbjct: 176 LRFFTVYG--PWGRPDMALFKFTKAML------EGK--SIDVYN------YGKMKRDFTY 219 Query: 227 VSDLIDAHVLAMAHLRAGGGT---------------RTLNCGYGVGYSVLDVLHAVQRES 271 + D+ +A + + R N G ++D + A++ Sbjct: 220 IDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDAL 279 Query: 272 EHEFPIIHCPRRAGDIATMVADSARIQSELGWRPRFNDLSTIVRTALQW 320 E P + GD+ AD+ + +G+ P + V+ + W Sbjct: 280 GIEAKKNMLPLQPGDVLETSADTKALYEVIGFTPE-TTVKDGVKNFVNW 327
>FLGMOTORFLIM#Flagellar motor switch protein FliM signature. Length = 344 Score = 56.8 bits (137), Expect = 3e-11 Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 18/224 (8%) Query: 95 MMAVGNGFVIALMERMLGAAPDTIGEPDERSLSHIELDLAAMVLGRIAGVLRSGVNAPGG 154 ++ V ++++R+ G +R L+ IE + V+ RI +R Sbjct: 116 VLEVDPSITFSIIDRLFGGTGQAAK--VQRDLTDIENSVMEGVIVRILANVRESWTQVID 173 Query: 155 FEATID-----PPFNANGRSAFDEMIAGVYGVTIRMKIDIGRVSSEFALIVPQ---RPLL 206 + P F + EM+ V + ++ +G +P P++ Sbjct: 174 LRPRLGQIETNPQFAQIVPPS--EMV-----VLVTLETKVGEEEGMMNFCIPYITIEPII 226 Query: 207 KTSIVAPKASAQALKKQEEWMEMISQQVKRSQVTLEARIKLETLTLRTISRLVAGDVIPF 266 S+ ++M ++ ++ + + A + L++R I L GD+I Sbjct: 227 SKLSSQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRL 286 Query: 267 QDLKQDDIGVEVSANGSKLYNCEFGKSGERYMVRVKNNVSTDDE 310 D D +S K + C+ G G++ ++ + + + Sbjct: 287 HDTHVGD-PFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTSQ 329
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 100 bits (250), Expect = 9e-30 Identities = 32/83 (38%), Positives = 60/83 (72%), Gaps = 3/83 (3%) Query: 93 SGLSENMELIMDIPIDVQIVLGTSRMLVSGLMGLEEGATIALDRKIGEPVEIMVNGRRIA 152 SG ++++LIMDIP+ + + LG +RM + L+ L +G+ +ALD GEP++I++NG IA Sbjct: 48 SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107 Query: 153 RGEITVLEDDDTRFGVKLIEVMS 175 +GE+ V+ D ++GV++ ++++ Sbjct: 108 QGEVVVVAD---KYGVRITDIIT 127
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 295 bits (758), Expect = e-101 Identities = 73/332 (21%), Positives = 163/332 (49%), Gaps = 6/332 (1%) Query: 14 KPLSQADKAAAVLLAMGKGVAGKLLKFFTQHELQMIISSAQTLRVIPPDELAQIVAEFED 73 L+ KAA +L+++G ++ K+ K+ +Q E++ + L I + ++ EF++ Sbjct: 13 SALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKE 72 Query: 74 LFTEGTGLMDNAK-AIESILEEGLTPEEVDSLLGRRTAFQAYEASIWDRLQEAEPEFVGK 132 L + +LE+ L ++ ++ + A ++ ++ ++ A+P + Sbjct: 73 LMMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGS--ALQSRPFEFVRRADPANILN 130 Query: 133 FLLREHPQTIAYILSMLPSSFGAKVLLTIPEEQRADIMNRTVNMKEVSPTAAQIIEKRVV 192 F+ +EHPQTIA ILS L + +L ++P E + ++ R M SP + +E+ + Sbjct: 131 FIQQEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLE 190 Query: 193 NLINEIEAE--RNAGGSTKVADLMNELEKPQVDTLLSSLETLSKEAANKVKPKIFLFDDL 250 + + +E +AGG V +++N ++ ++ SLE E A ++K K+F+F+D+ Sbjct: 191 KKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDI 250 Query: 251 MFMPQRSRVMLLNDVSADVLTMALRGATMEIKECVLSSISPRQRRMIESDLAVPQASINT 310 + + RS +L ++ L AL+ + ++E + ++S R M++ D+ Sbjct: 251 VLLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEF-LGPTRR 309 Query: 311 REVAIARRAVAQEAIRLANSGQIQLKEAGADE 342 ++V +++ + +L G+I + G ++ Sbjct: 310 KDVEESQQKIVSLIRKLEEQGEIVISRGGEED 341
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 368 bits (947), Expect = e-129 Identities = 99/349 (28%), Positives = 183/349 (52%), Gaps = 9/349 (2%) Query: 8 DSKTEAPTEKKLRDAAEKGNLPFSREVPIFASSLAFYCYLVF---FLPDGAGRIGETLKD 64 KTE PT KK+RDA +KG + S+EV A +A L+ + + ++ + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 65 LFGQPEQWNLGTRPDALSLLYFLGTSMAYLLMPAMIMFIVFGLASSFFQNLPSPVLERVR 124 P L D + L +F L P + + + +AS Q E ++ Sbjct: 63 QSYLPFSQALSYVVDNVLLEFFY------LCFPLLTVAALMAIASHVVQYGFLISGEAIK 116 Query: 125 PQWSRVSPAKGFTRIYSKQGFVEFGKSLFKILIVSTIMFFSLRGDFYSLIDLMFSDPQVI 184 P +++P +G RI+S + VEF KS+ K++++S +++ ++G+ +L+ L + I Sbjct: 117 PDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECI 176 Query: 185 FVRVVEIVKKMMVVILLSTALLAAVDLLWTRHHWFTQLKMTKHEVKEEYKQSQGDPVVKS 244 + +I++++MV+ + +++ D + + + +LKM+K E+K EYK+ +G P +KS Sbjct: 177 TPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKS 236 Query: 245 RQRSIARDRARRRMINNVPRATLVIANPTHFAVALRYVREESDAPIVVAKGQDLIALKIR 304 ++R ++ R M NV R+++V+ANPTH A+ + Y R E+ P+V K D +R Sbjct: 237 KRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVR 296 Query: 305 EIAEENNIPVFEDPPLARSMFAQVSIDSVIPPAFYKAVAELVHRVYAMK 353 +IAEE +P+ + PLAR+++ +D IP +A AE++ + Sbjct: 297 KIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQN 345
>FLAGELLIN#Flagellin signature. Length = 507 Score = 152 bits (384), Expect = 4e-43 Identities = 75/504 (14%), Positives = 145/504 (28%), Gaps = 69/504 (13%) Query: 4 IMTNAAAMAALQTLRMIDKSLETTQARVSSGYRVETAADNAAYWSISTTMRSDNTALSAV 63 I TN+ ++ L SL + R+SSG R+ +A D+AA +I+ S+ L+ Sbjct: 4 INTNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQA 63 Query: 64 QDALGLG---AAKVDTAFEAIESAIETVESLKAKLVAAYGVGSNRSKIQEEIKQLQDQLK 120 G A + A I + ++ V L + S+ IQ+EI+Q +++ Sbjct: 64 SRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEID 123 Query: 121 SISESASFSGENWLQAKIG----------------------DGKTPAAEEPTIKKIVASF 158 +S F+G L K Sbjct: 124 RVSNQTQFNGVKVLSQDNQMKIQVGANDGETITIDLQKIDVKSLGLDGFNVNGPKEATVG 183 Query: 159 TRTAAGAVGVTTVDYSLDSSTVLFDLSGGKFGILDTEARFLRKNETIVTMRTTDTPALPA 218 ++ Y++ ++ D++ G T K T Sbjct: 184 DLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAEN 243 Query: 219 VPTVTDKDYVVTTLKDSEVAALSGFTVKAT------------------------GIYTNA 254 V +T +E A++G + T Sbjct: 244 NTAVDLFKTTKSTAGTAEAKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTI 303 Query: 255 ANTEGYLKISDDVWVKLTSTDPADAAAPTTDSTTPVVTTTSPNTNWYYDVSSAIDPDDRK 314 + L ++D ++ ++ T + + + Sbjct: 304 NGEKVTLTVADITAGAANVDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNA 363 Query: 315 LGISVSTLDINKLTDLAQKMGTMTGEQY--------------------TEADVLDAMMSF 354 + +T ++ Sbjct: 364 VKGESKITVNGAEYTANAAGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLAS 423 Query: 355 VDGQLEAMTSAASSLGSLQSRIDMQENFVSSLMDVIDKGIGRLVDADMNEESTRLKALQT 414 +D L + + SSLG++Q+R D + + + ++ R+ DAD E + + Q Sbjct: 424 IDSALSKVDAVRSSLGAIQNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQI 483 Query: 415 QQQLGIQSLSIANANAENILQLFK 438 QQ G L+ AN +N+L L + Sbjct: 484 LQQAGTSVLAQANQVPQNVLSLLR 507
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 36.2 bits (83), Expect = 3e-04 Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 6/114 (5%) Query: 187 TQQVKITRADQQQEPVEPQQAAESKQEDAAENAQAIALKSSETPVDKAEDGKSMEVAAVV 246 T + Q P P E + D A SET AE+ K Sbjct: 994 TTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEK 1053 Query: 247 PQQRP-----DASEQAALAQPKPDAQRQASDLQQKASDADREKADTLREEIEKQ 295 +Q E A A+ A Q +++ Q S+ +E T +E Sbjct: 1054 NEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSET-KETQTTETKETATV 1106 Score = 33.5 bits (76), Expect = 0.002 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%) Query: 188 QQVKITRADQQQEPVEPQQAAESKQEDAAENAQAIALKSSETPVD----KAEDGKSMEVA 243 Q ++ + + Q ++ + Q K + T K E K+ EV Sbjct: 1064 QNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVP 1123 Query: 244 AVVPQQRP-DASEQAALAQPKPDAQRQASDLQQKASDADREKADT 287 V Q P + Q +P + + ++ ADT Sbjct: 1124 KVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADT 1168
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.0 bits (78), Expect = 3e-04 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 6/123 (4%) Query: 2 IVVVDERELVKDGYTSLFGREGIPSTGFDPAEFGEWVSTAAESDLAAVEAFLIGQGDRSY 61 I+V D+ ++ R G A A + DL + ++ + ++ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTD--VVMPDENAF 63 Query: 62 SLPKAIRDR-TTAPVIAVSDQPSLESTLALFDSGVDDVVRKPVHPREILA---RAAAIRR 117 L I+ PV+ +S Q + + + + G D + KP E++ RA A + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 118 RLQ 120 R Sbjct: 124 RRP 126
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 43.8 bits (103), Expect = 9e-07 Identities = 14/48 (29%), Positives = 26/48 (54%) Query: 378 IQKGALEGSNVDIASELTDMIESQRIYTANSKVFQTGSDLMDVLINLK 425 + S V++ E ++ Q+ Y AN++V QT + + D LIN++ Sbjct: 499 LSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR 546 Score = 39.6 bits (92), Expect = 2e-05 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 9 TGVSGMNAQANKLGTVGDNIANASTTGYKRASTSFS-SLVLPSSSGSYASGGVQSNVRYS 67 +SG+NA L T +NI++ + GY R +T + + + G +G S V+ Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQRE 65 Query: 68 ISEQGNLSYTTSSTDLA 84 + T + Sbjct: 66 YDAFITNQLRAAQTQSS 82
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 71.5 bits (175), Expect = 2e-15 Identities = 57/313 (18%), Positives = 124/313 (39%), Gaps = 15/313 (4%) Query: 4 TSAMNTAQSIFNNTGKQTDVTAKNIANVGNANYVKRTAILGT---TMAGATIVTNG---- 56 +S +N A S N + + NI++ A Y ++T I+ T+ V NG Sbjct: 1 SSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVS 60 Query: 57 ---RAQNESLLRQTISSASLATGQNTVLTGLEEVRSIFGSNNYESAPSTYMEELLKSLSS 113 R + + Q ++ + ++G + ++ ++ ++ S+ +T M++ SL + Sbjct: 61 GVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS--TSSLATQMQDFFTSLQT 118 Query: 114 YAAKPSNAALAATAVTSASDVASSLNKASAELQAMRLRADKEMSLQVDKLNGLLAKFEEA 173 + + A + + + + L+ + + + VD++N + Sbjct: 119 LVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASL 178 Query: 174 NNEVKAQTAIGG--DPSDALDQRETLLKDISSIIGINVVNRPNNDVALYTTEGATLFEIV 231 N+++ T +G P++ LDQR+ L+ +++ I+G+ V + + G +L + Sbjct: 179 NDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGS 238 Query: 232 PRKVTFKAQPGYDATTTGNAIYVDGVALKAGSGSNTTAEGSLQGLMQIRDDLAPTMQSQL 291 + A P + YVDG A GSL G++ R ++ L Sbjct: 239 TAR-QLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTL 297 Query: 292 DEIARGLISMFAE 304 ++A F Sbjct: 298 GQLALAFAEAFNT 310 Score = 34.9 bits (80), Expect = 7e-04 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Query: 432 RSGATSANEAKSALYERSATSYSNNTAVSLDEELSLLMDIEQSYKAATKLVTTVDEMLKS 491 S AT N + L + S S V+LDEE L +Q Y A +++ T + + + Sbjct: 487 TSSATQGNV-VTQLSNQQQ-SISG---VNLDEEYGNLQRFQQYYLANAQVLQTANAIFDA 541 Query: 492 LMDM 495 L+++ Sbjct: 542 LINI 545
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 51.7 bits (124), Expect = 1e-12 Identities = 20/77 (25%), Positives = 40/77 (51%) Query: 5 DALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQVQEMTLTFVPKIVTIMIVLGV 64 D + A++ VL+ +G + A I+G+ + Q +TQ+QE TL F K++ + + L + Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 AAPFVGAQIALFSNLVF 81 + + G + + V Sbjct: 63 LSGWYGEVLLSYGRQVI 79
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 30.7 bits (69), Expect = 0.006 Identities = 10/41 (24%), Positives = 18/41 (43%) Query: 208 EAARDAFAEAEKLKPGNPRARFYLALSLEQAGKADEARAAF 248 + A +++ + PR F+ A L Q G+ EA + Sbjct: 87 DLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGL 127
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 65.0 bits (158), Expect = 1e-13 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 25/157 (15%) Query: 137 GSGFFISEDGYIVTNNHVVD----DGSAYTIVM--------NDGTELDAKLVGRDPRTDL 184 SG + ++TN HVVD D A +G ++ DL Sbjct: 104 ASGVVVG-KDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDL 162 Query: 185 ALLKV-------DVNRKFTYVQFADDSKIRVGDWVVAVGNPFGLGGTVTSGIISARGRDI 237 A++K + +++++ +V + G P ++G+ Sbjct: 163 AIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMW---ESKGKIT 219 Query: 238 GSGPYDDYLQIDAAVNRGNSGGPAFNLNGEVVGINTA 274 +Q D + GNSG P FN EV+GI+ Sbjct: 220 YLKGEA--MQYDLSTTGGNSGSPVFNEKNEVIGIHWG 254
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 1e-19 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 1/124 (0%) Query: 29 KILVIEDDLEAAAYMTKAFREAGIVADHASDGESGLFMGCENAYDVMVIDRMLPRRDGLS 88 ILV +DD + +A AG S+ + D++V D ++P + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 89 VISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIE-VLGRRKG 147 ++ +++ + PVL++SA + G DYLPKP+ +EL+ I L K Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 148 KPEQ 151 +P + Sbjct: 125 RPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.001 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 17/72 (23%) Query: 362 LIDNAMKYACE-SEGDKKLAVRLVKEPEAIVLSVADNGPGIPADKRGEVLKRFVRLDESR 420 L++N +K+ K+ ++ K+ + L V + G L Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGS----------------LALKN 306 Query: 421 SKPGTGLGLSLV 432 +K TG GL V Sbjct: 307 TKESTGTGLQNV 318
>PF06580#Sensor histidine kinase Length = 349 Score = 33.7 bits (77), Expect = 0.003 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 26/105 (24%) Query: 671 LLSNAVKF----TGDGGRIALRTHVHEAAMILTIADTGIGIPTQALEKIGQPFEQVQSQY 726 L+ N +K GG+I L+ + L + +TG Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG------------------SLAL 304 Query: 727 AKSQGGSGLGLA-ISRSLVKLHGG--TMKIRSCEGRGTVVTIIIP 768 ++ +G GL + L L+G +K+ +G+ + ++IP Sbjct: 305 KNTKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAM-VLIP 348
>TCRTETOQM#Tetracycline resistance protein TetO/TetQ/TetM family signature. Length = 639 Score = 31.4 bits (71), Expect = 0.005 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 25/128 (19%) Query: 30 NAGKSTLVNRLV---GAKVSIVSHKVQTTRAV------MRGIAIH--------DNAQIVF 72 +AGK+TL L+ GA + S TTR RGI I +N ++ Sbjct: 13 DAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNI 72 Query: 73 MDTPGIFKPRRRLDRAMVTSAWGGAKDADLILLLIDSERGLKGDAETILEGLKDVPQKKI 132 +DTPG + R++ S GA +LLI ++ G++ + L+ + I Sbjct: 73 IDTPGHMDFLAEVYRSL--SVLDGA------ILLISAKDGVQAQTRILFHALRKMGIPTI 124 Query: 133 LCLNKIDQ 140 +NKIDQ Sbjct: 125 FFINKIDQ 132
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 51.0 bits (122), Expect = 1e-10 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 5/114 (4%) Query: 1 MVPQRVIIVEDEYLVALDVEAVLQSMGVETITIATTLAQAREAAGQDVADCVLLDVSLSD 60 M +++ +D+ + + L G + + A D V+ DV + D Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPD 59 Query: 61 GKSYDFARELRAA--GIPFGFVSGYGDTTGFPEDLMHAPL--LGKPFGENEIVG 110 ++D ++ A +P +S + L KPF E++G Sbjct: 60 ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIG 113
>BONTOXILYSIN#Bontoxilysin signature. Length = 1196 Score = 34.9 bits (80), Expect = 3e-04 Identities = 10/32 (31%), Positives = 20/32 (62%) Query: 218 VYDPRGLSENAARDGFVQAALKALQRRASPPA 249 +YD LS+++ R+ F+QA + L+R + + Sbjct: 63 IYDSNFLSQDSERENFLQAIIILLKRINNTIS 94
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.4 bits (123), Expect = 3e-09 Identities = 62/341 (18%), Positives = 122/341 (35%), Gaps = 11/341 (3%) Query: 47 STFGLAMALQNLFWGLGQPFFGAIADKYGTGRVLVLSGFLYAAGLICMSFGTSPFWLHFG 106 + +G+ +AL L P GA++D++G VL++S A M+ W+ + Sbjct: 43 AHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-LWVLYI 101 Query: 107 GGVLVGLGIAAGSFSVILSAFARHVTPQQRSLAFGIGTAAGSAGMFLFAPISQGLISAYG 166 G ++ G I + +V + A +R+ FG +A GM P+ GL+ + Sbjct: 102 GRIVAG--ITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA-GPVLGGLMGGFS 158 Query: 167 WSDSLVWLAVMMMLVPLLA-FPMRGNSSSGSQSQTQFQQTAGEALREALGHKSYLLLTTG 225 A + L L F + + + + + R A G L Sbjct: 159 PHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAV 218 Query: 226 FFVCGFQVAFITAHFPAYLGD-IGIEPRYAVIAMALIGFFNIIG-SLAAGVIAQRYSKPY 283 FF+ A + + D + I++A G + + ++ G +A R + Sbjct: 219 FFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERR 278 Query: 284 MLAYIYIARSIAVTAFLLLPQSPLSVILFAAVMGILWLSTVPPTNALVAIMFGTRHLGML 343 L IA + ++ + V+ +P A+++ G L Sbjct: 279 ALMLGMIADGTGYILLAFATRGWMAFPIM--VLLASGGIGMPALQAMLSRQVDEERQGQL 336 Query: 344 GGVVFLSHQIGSFLGVWLGGFLYD-RLGSYD-LVWWLGVGM 382 G + + S +G L +Y + +++ W G + Sbjct: 337 QGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAAL 377
>ALARACEMASE#Alanine racemase signature. Length = 356 Score = 232 bits (593), Expect = 2e-75 Identities = 112/374 (29%), Positives = 173/374 (46%), Gaps = 28/374 (7%) Query: 21 PLRLTVDLGALADNWRDMKKRSGKARTAAVVKADAYGLGIEDCGATLYHAGARDFFVATV 80 P++ ++DL AL N +++ + AR +VVKA+AYG GIE + + F + + Sbjct: 4 PIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIERIWSAIGATDG--FALLNL 61 Query: 81 AEGATLRSYAPEARIFVLSGIWQGQE-RQVFDNDLVPVLASEEQLSFWMATVAERGDHPC 139 E TLR + I +L G + Q+ + L + S QL A R P Sbjct: 62 EEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLK---ALQNARLKAPL 118 Query: 140 ALH--VDTGFNRLGLPLDDALFLADDVTRPASFDPVLVLSHLACADTPSSPMNRAQLESF 197 ++ V++G NRLG D L + + A+ + ++SH A A+ P + Sbjct: 119 DIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISG--AMARI 176 Query: 198 RKVSAAFEGIESSLSASAGIFLGPDYHFDLTRPGIALYGGEAVNDVANP----MRPVAKA 253 + + E SLS SA P+ HFD RPGI LYG + +RPV Sbjct: 177 EQAAEGLEC-RRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTL 235 Query: 254 EARIIQIREAGEGQTVSYGGSFLLKRASRLAIASVGYADGYQRSLSGSGIPLREMGHGGA 313 + II ++ G+ V YGG + + R+ I + GYADGY R +G P+ Sbjct: 236 SSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAP-TGTPV-------- 286 Query: 314 YGVVNDHRVPVAGRVTMDLTIFDVTDVPANAIRNGDYIELFGPNVPVDETARAAGTIGYE 373 +V+ R G V+MD+ D+T P I G +EL+G + +D+ A AAGT+GYE Sbjct: 287 --LVDGVRTMTVGTVSMDMLAVDLTPCPQAGI--GTPVELWGKEIKIDDVAAAAGTVGYE 342 Query: 374 MLTGLGLRYERQYL 387 ++ L LR + Sbjct: 343 LMCALALRVPVVTV 356
>PF05860#haemagglutination activity domain. Length = 117 Score = 30.9 bits (70), Expect = 0.002 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 48 GSQISTIQGTTEQTGPGHLYLINPDEI 74 G +S I G +L+LINP+ I Sbjct: 66 GGSVSNIDGLIRANATANLFLINPNGI 92
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 26.0 bits (57), Expect = 0.031 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 48 AVLMAVVTPTALATGPAETI--ACAITAVAALRLSLLPAATVGVAAVALL 95 VL AV P A G I +IT V+A+ LS+L A + A A L Sbjct: 447 MVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 2e-05 Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 14/198 (7%) Query: 60 EFSATVAEVAWLSAAYMAPYATFSIALFKIRAQYGLRPFAELSIIAFVVASCLNLFVTDL 119 +F+ A W++ A+M ++ + K+ Q G++ II S + FV Sbjct: 43 DFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG-FVGHS 101 Query: 120 HSAIVI--RFVSGMAAAPISSLGFLYILEAFPPARKFSLGFSIALTGTL--LSAPIARIV 175 +++I RF+ G AA +L + + P + G + L G++ + + + Sbjct: 102 FFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENR---GKAFGLIGSIVAMGEGVGPAI 158 Query: 176 SPSLLEIDGWNALYSMEVGFALISFAMIYVLKVTPPPRAKVIERMDILSYLLFAGGLGCL 235 + W+ L +I+ + L ++ DI +L + G+ Sbjct: 159 GGMIAHYIHWSYLLL----IPMITIITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFF 214 Query: 236 AVMLTLGRFYWWFETWWL 253 ML + F + Sbjct: 215 --MLFTTSYSISFLIVSV 230
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 103 bits (259), Expect = 1e-26 Identities = 59/408 (14%), Positives = 122/408 (29%), Gaps = 84/408 (20%) Query: 7 TPVSILVLLGGLAGVALVLYAWRLPPFLSTVEMTDNAFVRGYVTTMSPQVSGYVVDVPVK 66 P + + G +A +L G + P + V ++ VK Sbjct: 56 RPRLVAYFIMGFLVIAFILSVLG--QVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVK 113 Query: 67 DYQEVKQGTLLAKIDDRIYRQKQAQAAATLDTQ--------------------------- 99 + + V++G +L K+ + ++L Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 100 ------------------KAALDNSRQQENAANANILSSQAAVDSAEASL--KQAQLASD 139 K + Q+ N+ +A + A + + + Sbjct: 174 PYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVE 233 Query: 140 RQ-----DNLIKSG-VGTSSLQE-------------EAHAALEKARASLSQAKAALEVSR 180 + +L+ + ++ E + LE+ + + AK ++ Sbjct: 234 KSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVT 293 Query: 181 QDLQT-IIVNRSSLQAAVANAEAAVELTKIDLANTEIHAPVDGRLGEVGVRT-GQYVTAG 238 Q + I+ + + + + I APV ++ ++ V T G VT Sbjct: 294 QLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA 353 Query: 239 TQLMAVVPHD--VWVIANFKETQLAGMQVGQPVTISVDALHRRK---LTGHVERFSPATG 293 LM +VP D + V A + + + VGQ I V+A + L G V+ + Sbjct: 354 ETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA- 412 Query: 294 SEFAVIKPDNATGNFVKIAQRLGVRIAIDADQPLAADLSPGMSVVVHV 341 D G + + ++ + LS GM+V + Sbjct: 413 ------IEDQRLGLVFNVIISIEENCLSTGNKNIP--LSSGMAVTAEI 452
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.5 bits (92), Expect = 1e-06 Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 73 ISDLWVDPNWQGKGIGKALILHFLDRMRAQGLPFATIDTHAGNQTAIGLYERCGFQI 129 I D+ V +++ KG+G AL+ ++ + ++T N +A Y + F I Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFII 148
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 6e-06 Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 77 ISDFWVDPDFQRRRVGTLLLADMERLIRDKGFDAIRLETHAQNEPAVAFFRHHDY 131 I D V D++++ VGT LL ++ F + LET N A F+ H + Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.002 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 85 ALLHQLYVAPEFQRQGVGRDLFAELETCFP---DAEIMRLEVEPKNTVAIAFYEGVGF 139 AL+ + VA +++++GVG L + + LE + N A FY F Sbjct: 90 ALIEDIAVAKDYRKKGVGTALL-HKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.2 bits (91), Expect = 2e-06 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 60 LYVAELDGEVVGTFQTAILTKLVGRGAKSMVIEAVQTRADMRGRGIGAVMINHCLEEARR 119 ++ L+ +G K+ +IE + D R +G+G +++ +E A+ Sbjct: 67 AFLYYLENNCIGRI------KIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKE 120 Query: 120 QGLNAAQLTSNMARLDAHRFYERLGF 145 L + + A FY + F Sbjct: 121 NHFCGLMLETQDINISACHFYAKHHF 146
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 29.0 bits (65), Expect = 0.040 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 29/193 (15%) Query: 258 FATLDSTIALMFALLINASIL-----ILAAATFNKTGQTNVAELGEAHNLLAPLLGLAIA 312 + +AL L+ + L ++ L + + Sbjct: 29 VVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFFYLCF 88 Query: 313 PTLFGVALLCCGINSTV---TATLAGQIVMEGFLKMRLAPWLRRLITRAIAIVPAAAVTV 369 P L AL+ I S V ++G+ + K+ +R+ Sbjct: 89 PLLTVAALM--AIASHVVQYGFLISGEAIKPDIKKINPIEGAKRI--------------- 131 Query: 370 FYGDSGTAELL--ILTQVVLSLQLSFAVFPLVMFTADKAKMGALKA-PLWLSAFAWLIAV 426 + E L IL V+LS+ + + ++ G PL L+ + Sbjct: 132 -FSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLGQILRQLMVI 190 Query: 427 VIAVLNVKLLLDF 439 V + D+ Sbjct: 191 CTVGFVVISIADY 203
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 34.0 bits (78), Expect = 0.001 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 23 RIALIPPISAARWLLVLVALAGIYFFHGFLVPVLAALVIGF-ASWPVYTRLLRQVGGNTT 81 + A+I P +L +VA+A + +VP + I + P+ TR+L +G + Sbjct: 170 QQAMIYPC-----VLTVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVL--MGMSDA 222 Query: 82 LGATIAIILILAFLVV 97 + +L+ Sbjct: 223 VRTFGPWMLLALLAGF 238
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 45.7 bits (108), Expect = 7e-09 Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 39 DIGALEQDNVSFFVARHDGRVVGCGALVEAGDGTAEVKRMFVDPDARGLRIGKLIMDTLV 98 D+ +E++ + F+ + +G + +G A ++ + V D R +G ++ + Sbjct: 56 DVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAI 115 Query: 99 ARGAELGLSAIRLETGISQPEAIGLYRKAGF 129 E + LET A Y K F Sbjct: 116 EWAKENHFCGLMLETQDINISACHFYAKHHF 146
>BACYPHPHTASE#Salmonella/Yersinia modular tyrosine phosphatase signature. Length = 468 Score = 26.3 bits (57), Expect = 0.047 Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 62 PGEQAPQTAGAQPPATAPATTPQATAAVTPKEEESLTKQAISRVSRILPSTEGIKHL 118 P + P T+G A AT P + P+ L+ + + + + P+T ++L Sbjct: 162 PPRERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTLRNTLAPATNDPRYL 218
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 28.3 bits (63), Expect = 0.049 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Query: 210 VSIVFAQADGLALGAAQAIKVANPSQK-IVVGGFDGDTAALEALKNGVFD 258 +V + L IK A P +V+ + A++A + G +D Sbjct: 53 TDVVMPDENAFDL--LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYD 100
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 29.4 bits (66), Expect = 0.009 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 9/117 (7%) Query: 20 AQHLNLSQATVSRMLKRAEAEGIVRTSIIPPPGTYSDLEAQLRERFDLPEAIVVDCSEDR 79 N++QATVSR +K +V+ YS Q + ++D Sbjct: 31 KDGYNVTQATVSRDIKEL---HLVKVPTNNGSYKYSLPADQRFNPLSKLKRSLMDAFVKI 87 Query: 80 DGA---IMARIGEAAAHFLEVTLSQN---EIIGVSSWSQTIFKMVENIHPLKGAKAR 130 D A I+ + A + + EI+G TI + K + + Sbjct: 88 DSASHLIVLKTMPGNAQAIGALMDNLDWEEIMGTICGDDTILIICRTHDDTKVVQKK 144
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 128 bits (322), Expect = 5e-38 Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 5/254 (1%) Query: 5 EGQSVFVTGGNKGIGYGIARRFAEEGAKVALASVDRDTHDAARKLADETGAVTHGVILDV 64 EG+ F+TG +GIG +AR A +GA +A + + + DV Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 RDAAAVREAYGAAEEAIGALSISVQNAGVITISKIEELTQEQWDFNLDVNTKGAFLCCQE 124 RD+AA+ E E +G + I V AGV+ I L+ E+W+ VN+ G F + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 125 AIRRFRESGTKGRLVNTASGQARQGFIYTPHYAASKFGVIGLTQSLAKELAPEGITVNAI 184 + + G +V S A YA+SK + T+ L ELA I N + Sbjct: 127 VSKYMMDR-RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 CPGIIHTEMWDYNDRVWGQMLGDYKPGELMAEWVR-NIPMRRAGTPAEVAALVAFLASED 243 PG T+M +W G + + E + IP+++ P+++A V FL S Sbjct: 186 SPGSTETDM---QWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 244 AAYITGQTINVDGG 257 A +IT + VDGG Sbjct: 243 AGHITMHNLCVDGG 256
>ABC2TRNSPORT#ABC-2 type transport system membrane protein signature. Length = 262 Score = 75.7 bits (186), Expect = 2e-18 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 3/226 (1%) Query: 18 RRTLLQSVVSPVISTSLYFIVFGTAIGSRIQEVGGVSYGAFITPGLIMLTLLTQCIGNGS 77 ++ L S++ + +Y G +G + VGGVSY AF+ G++ + +T Sbjct: 28 KKAALASLLGHLAEPLIYLFGLGAGLGVMVGRVGGVSYTAFLAAGMVATSAMTAATFETI 87 Query: 78 FGIYFPKF-TGTVYEILSAPVAMTEILAGYVGAAATKGLMIGTIILITASFFVDITIAHP 136 + + T +L + + +I+ G + AATK + G I + A+ Sbjct: 88 YAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLSL 147 Query: 137 FMMILFFVLTAVSFSLFGFIIGIWATNFEQLNLIPMLVVPPLTFLGGSFYSIDMLPPFWQ 196 + LT ++F+ G ++ A +++ LV+ P+ FL G+ + +D LP +Q Sbjct: 148 LYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVFQ 207 Query: 197 TVSHFNPVLYLISGFRWSFYE--IADVNPVISLAMITLFLAFCLGV 240 T + F P+ + I R + DV + I + + F L Sbjct: 208 TAARFLPLSHSIDLIRPIMLGHPVVDVCQHVGALCIYIVIPFFLST 253
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.5 bits (97), Expect = 4e-07 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 9/90 (10%) Query: 70 ALVAILDGKIVGDIGLTRHTNRRAHAGSIGMGVHDAYTGRGIGSAMIGEILAIADRWL-- 127 A + L+ +G I + + N A I V Y +G+G+A++ A W Sbjct: 67 AFLYYLENNCIGRIKIRSNWNGYALIEDIA--VAKDYRKKGVGTALLH----KAIEWAKE 120 Query: 128 -DLKRIELTVITDNEPALALYRKFGFEVEG 156 + L N A Y K F + Sbjct: 121 NHFCGLMLETQDINISACHFYAKHHFIIGA 150
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 30.4 bits (68), Expect = 0.021 Identities = 39/251 (15%), Positives = 79/251 (31%), Gaps = 15/251 (5%) Query: 139 TDAHRTLLDAFAGLSDEARAVQGFYRTWKDAERALKTHRAKVEAAAREADYLRSSVEELE 198 L A G + + A +T + + AL+ +A++E A A ++ Sbjct: 154 AARKADLEKALEGAMNFSTADSAKIKTLEAEKAALEARQAELEKALEGAMNFSTADSAKI 213 Query: 199 TLSPRDGE--EDELAERRAVMQKSERIAGDIAEASEFLNGNASPVPVIASMMRRLERKSH 256 + A+ ++ + + + + L + + + LE+ Sbjct: 214 KTLEAEKAALAARKADLEKALEGAMNFSTADSAKIKTLEAEKA---ALEARQAELEKALE 270 Query: 257 EAPGLLEDTVQLLDAALDSLSNAQMEVEAALRRTEFDPRELERVEERLFALRAAGRKYNV 316 A + + + E +++ + + L A R A ++ Sbjct: 271 GAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKKQLEA 330 Query: 317 AVPDLPAL---AEKMVADL-ADLDAGEEKLGKLEANLGVVKADF---DRAAQSLS---DK 366 L +E L DLDA E +LEA ++ + + QSL D Sbjct: 331 EHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNKISEASRQSLRRDLDA 390 Query: 367 RRHAADALSGA 377 R A + A Sbjct: 391 SREAKKQVEKA 401
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 41.2 bits (96), Expect = 1e-05 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 10/204 (4%) Query: 331 ADMRAAAAVAKPLIRPSAAVASAPAAVQPAPAVSQAQKAVDPIAQTIRSAEAEMERELG- 389 AD+ + + + + R A PA P+ + ++T+ E + Sbjct: 1005 ADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQ 1064 Query: 390 ---FAAHQQPAQDFRPQSKLFASSPAEA----PAALRPAQPVQQVAPAPVAPAPVYHAPE 442 A + Q+ A S +E + V++ A V P+ Sbjct: 1065 NREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPK 1124 Query: 443 QVAAPAPRMQQPQAPIYQEPAPVARQPEPVRMPKVEDFPPVVKAEMEHRTHAAPAAQEER 502 + +P+ +Q + Q A AR+ +P K A+ E + E+ Sbjct: 1125 VTSQVSPKQEQSET--VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQP 1182 Query: 503 GPMGLLKRITNSLGRREEEEVPSD 526 NS+ E P+ Sbjct: 1183 VTESTTVNTGNSVVENPENTTPAT 1206
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 45.5 bits (108), Expect = 2e-07 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 26/222 (11%) Query: 178 LLGVDMHVVTVERTALKNLELCVNRAHLSVEGMVATPYASGLAALVDDEVELGCAAIDMG 237 L+ V + VER A++ A ++ P A+ + A + G +D+G Sbjct: 111 LVCVPVGATQVERRAIRESAQ---GAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIG 167 Query: 238 GGTTTISVFAEGRLIHTDAIGLGG----HHVTTDLAR--GLSTRIEDAERLKVVHGSALL 291 GGTT ++V + ++++ ++ +GG + + R G AER+K GSA Sbjct: 168 GGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYP 227 Query: 292 NGADERDMISIPPIGEDDRDQPSQVSRALV--TRIVRARIEETLELIRDRIQKS------ 343 DE I + R+ V R + + ++E L I + + Sbjct: 228 --GDEVREIEVR-----GRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPP 280 Query: 344 -GFSPIVGKRVVLTGGASQLTGLPETARRILARNVRIG-RPM 383 S I + +VLTGG + L L V + P+ Sbjct: 281 ELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPL 322
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.2 bits (68), Expect = 0.015 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 16/99 (16%) Query: 302 IFIPIAGKLAEKFGRREILILTTVLIGLFSFLLPTLMTGSEGSIFVFAALAMMLMGMTYG 361 P+ G L+++FGRR +L L+ L + + + ++V + ++ G+T Sbjct: 58 ACAPVLGALSDRFGRRPVL-----LVSLAGAAVDYAIMATAPFLWVL-YIGRIVAGITGA 111 Query: 362 LIGTALAA-----PFPTRVRYTGSSITFNMAGIFGASLA 395 A A R R+ G M+ FG + Sbjct: 112 TGAVAGAYIADITDGDERARHFGF-----MSACFGFGMV 145
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 30.7 bits (69), Expect = 0.002 Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 81 LAVRPSHKNKGIGRELVRIAIAAARRKGSEAVIL 114 +AV ++ KG+G L+ AI A+ ++L Sbjct: 95 IAVAKDYRKKGVGTALLHKAIEWAKENHFCGLML 128
>TRNSINTIMINR#Translocated intimin receptor (Tir) signature. Length = 549 Score = 30.5 bits (68), Expect = 0.011 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 88 VPPGQELPAATPAAAAGATGAAANTSAPVCQR---SAIVDAAADLTD 131 +PP LP+ T AA G TG +++ + R S + ++ AD D Sbjct: 16 IPPAPPLPSQTDGAARGGTGHLISSTGALGSRSLFSPLRNSMADSVD 62
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 40.8 bits (95), Expect = 6e-06 Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 20/187 (10%) Query: 24 VPVPQPKPGEA-QSSTPSEKPREEKLQNPAEAPKPEPKPQVPEASKPDGEKTAADKEPGD 82 V Q+ PS E++ EAP P P P P + + + + Sbjct: 992 VDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTV 1051 Query: 83 AKKEGEGKGSEGQQKPADGVKKAEEKPREPVKPEDPAELEACLGALKEIGAQFK-KLEPI 141 K E + + Q + E K + E + Q E Sbjct: 1052 EKNEQDATETTAQNREVA----KEAKSN---VKANTQTNEVAQSGSETKETQTTETKETA 1104 Query: 142 RDEEQGCGIEAPIELSVVLPGIKLEPSGTMRCETALALSRWTKEMMLPAAALALPEKKVT 201 E++ +A +E + P T + ++ + E + P A A Sbjct: 1105 TVEKEE---KAKVETE----KTQEVPKVT----SQVSPKQEQSETVQPQAEPARENDPTV 1153 Query: 202 AIANAST 208 I + Sbjct: 1154 NIKEPQS 1160 Score = 29.6 bits (66), Expect = 0.017 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 6/96 (6%) Query: 33 EAQSSTPSEKPREEKLQN--PAEAPKPEPKPQVPEASKPDGEKTAADKEPGDAKKEGEGK 90 E T P++E+ + P P E P V T AD E + + Sbjct: 1121 EVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVE 1180 Query: 91 GSEGQQKPADGVKKAEEKPRE----PVKPEDPAELE 122 + + E P +P +E Sbjct: 1181 QPVTESTTVNTGNSVVENPENTTPATTQPTVNSESS 1216
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 34.4 bits (79), Expect = 0.002 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 1/52 (1%) Query: 527 TGVKILLVDHEDSFVHTLANYFRQTGATVSTVRSPVAA-DVFDRFQPDLVVL 577 TG IL+ D + + L + G V + DLVV Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVT 53
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.1 bits (96), Expect = 5e-07 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 13/98 (13%) Query: 49 VHDMIENGHPQFVAIVDDEVIGWCDIR-----RVSRETRAHCGTLGMGILPAYRDKGLGA 103 V + E G F+ +++ IG IR E A YR KG+G Sbjct: 57 VSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVA--------KDYRKKGVGT 108 Query: 104 RLMRRTLDAARQCGLHRIELSVHGDNARAIALYEKIGF 141 L+ + ++ A++ + L N A Y K F Sbjct: 109 ALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>UREASE#Urea amidohydrolase (urease) protein signature. Length = 570 Score = 29.7 bits (67), Expect = 0.034 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 12/89 (13%) Query: 13 TGRQPADMVLKGGRFFDLVTGELVASDIAICGDTIVGTCENYEGRREIDITGKIVVPGFI 72 G AD+ LK GR + G+ D+ IVG G I GKIV G + Sbjct: 81 WGIVKADIGLKDGRIAAI--GKAGNPDMQPGVTIIVGP-----GTEVIAGEGKIVTAGGM 133 Query: 73 DTHLHIESSLVTPHEFDRCVLPYGVTTAI 101 D+H+H + P + + L G+T + Sbjct: 134 DSHIH----FICPQQIEE-ALMSGLTCML 157
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 29.9 bits (67), Expect = 0.003 Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 78 AFLEGVYVEEAFRRQGVAAALVAEVTRWAVGQGVSELASDADIANVDSHRMHAALGF 134 A +E + V + +R++GV AL+ + WA L + N+ + +A F Sbjct: 90 ALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>SECFTRNLCASE#Bacterial translocase SecF protein signature. Length = 333 Score = 29.0 bits (65), Expect = 0.040 Identities = 24/148 (16%), Positives = 61/148 (41%), Gaps = 9/148 (6%) Query: 146 LKAPSAENLELLEAAISKETDKEVR---TRMEEARAVSLLSSDRPLDQKKDAIATIKSLG 202 ++ +A ++ + AA+ +V R R ++ R Q+ A + Sbjct: 57 TESTTAIDVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQ 116 Query: 203 GRDAIGILMAASSSVDQSLKPDIDEAISSIESSLAFWDYVQNVWYGLSLGSVLLLAAIGL 262 G++ + + A ++VD +LK E++ S + V + L +V+++ I + Sbjct: 117 GQELVNKVETALTAVDPALKITSFESVGPKVSG----ELVWTAVWSLLAATVVIMFYIWV 172 Query: 263 AI--TFGVMGIINMAHGEMVMIGAYSTF 288 F + ++ + H ++ +G ++ Sbjct: 173 RFEWQFALGAVVALVHDVLLTVGLFAVL 200
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 124 bits (313), Expect = 9e-37 Identities = 72/254 (28%), Positives = 114/254 (44%), Gaps = 8/254 (3%) Query: 9 LENRTAIITGSGRGLGFEIASAFAEAGAHVWLTGRNAEMLEQAVETLRKAGGKADYAAFD 68 +E + A ITG+ +G+G +A A GAH+ N E LE+ V +L+ A+ D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 69 IADTAAGSALVRRIMAEFGHLDILVNNVGARDRRPLAEFTDEDVLELIRTDLTSSISLSR 128 + D+AA + RI E G +DILVN G + +DE+ + T + SR Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 129 DAAEAMNTNGYGRIITITSILGHIVRPGDAIYPVAKQGLTGLMRAIAVEYGARGITSNAI 188 ++ M G I+T+ S + R A Y +K + + +E I N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 189 APGMFATETNAAL-----AENPDMVAFA---KLRVPLERWGRPDEIAGAALFLASDAASF 240 +PG T+ +L + K +PL++ +P +IA A LFL S A Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 241 VNGHVLTVDGGMSV 254 + H L VDGG ++ Sbjct: 246 ITMHNLCVDGGATL 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 1e-15 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 920 PRRTIVVVDDNEDHRELMRQVLSPLDFVVLTAQSGPECLTLIEGVKPDLFLIDISMPGMS 979 TI+V DD+ R ++ Q LS + V + I DL + D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 980 GWQLVTKLREAGQTAPLIMLSANIGDGTVAGAGEDNHNDA---IAKPVDIRHLCDRLA 1034 + L+ ++++A P++++SA T A + + A + KP D+ L + Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQ---NTFMTAIKASEKGAYDYLPKPFDLTELIGIIG 116
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 3e-22 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%) Query: 9 PRDIVLLVDDSPEALGFLTDALEQSGFSALIATSGQAALNIAERITPDIILLDAVMPTMD 68 +L+ DD L AL ++G+ I ++ D+++ D VMP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 69 GFETCRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHL 128 F+ R+K A +PV+ M+ ++A E G DYL KP ++ EL I L Sbjct: 62 AFDLLPRIK--KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 129 SNARSAQSARVA 140 + + S Sbjct: 120 AEPKRRPSKLED 131
>SECA#SecA protein signature. Length = 901 Score = 31.8 bits (72), Expect = 0.001 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%) Query: 56 SMEPPSLLVCLNNRTLLHELLLCRPDFIVNVLTQDQAALSDAFSGKVSPEERFRDG 111 S L+ + H L D+IV + + D +G+ R+ DG Sbjct: 300 SPANIMLMHHVTAALRAHALFTRDVDYIV---KDGEVIIVDEHTGRTMQGRRWSDG 352
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 35.7 bits (82), Expect = 9e-05 Identities = 48/210 (22%), Positives = 73/210 (34%), Gaps = 35/210 (16%) Query: 12 TAAVMAATSAYSADLANYNAQQFDYANPPAFSWGGAYIGAHGGVASPRFNPLAGGRG--- 68 TA +A A A +A A P +W Y GA G + G Sbjct: 4 TAIAIAVALAGFATVAQ--------AAPKDNTW---YTGAKLGWSQYHDTGFINNNGPTH 52 Query: 69 ---LTGGVQAGYNFQFGSGVVGAELEGSYLGNDARVPNGRLRERFRGAAK-----LKAGV 120 L G GY VG E+ +LG R+P E A+ K G Sbjct: 53 ENQLGAGAFGGYQVNPY---VGFEMGYDWLG---RMPYKGSVENGAYKAQGVQLTAKLGY 106 Query: 121 ALDRTL-LYGTAGLTTTKFKDGNGVTG-PDDWKRGYLVGAGVEQSFGGGLSAKFEYNYVN 178 + L +Y G + + V G D + GVE + ++ + EY + N Sbjct: 107 PITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTN 166 Query: 179 TGNVSTTTSSGRSKTDVSDHVIKAGLNYRF 208 N+ + G T + ++ G++YRF Sbjct: 167 --NIGDAHTIG---TRPDNGMLSLGVSYRF 191
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 88.7 bits (220), Expect = 1e-22 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 2 RILLLEDEPEMARALLEALRRRDVLADHVSTISDADALARDGSYDVLVLDRRLPDGEGLS 61 IL+ +D+ + L +AL R S + G D++V D +PD Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LVSSLRRRKHSVPILVLTALGSVDHRVDGLDAGADDYLAKPFAIEELLARL-RALHRR 118 L+ +++ + +P+LV++A + + + GA DYL KPF + EL+ + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 49.6 bits (118), Expect = 1e-09 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 1/126 (0%) Query: 14 LEAAYEALLESGVDSVKILPLAKKLNLSRTSFYWFFKDREELLAALLSRWREKNTGSILR 73 L+ A + GV S + +AK ++R + YW FKD+ +L + + L Sbjct: 17 LDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELE 76 Query: 74 QSEAYAETLAEAMLNVFDCWLDSSLFDSKFEFAVRSWALQSDDILAELRKADQMRMEALS 133 + + + L+S++ + + + + + E+ Q + Sbjct: 77 YQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEII-FHKCEFVGEMAVVQQAQRNLCL 135 Query: 134 RMFMRF 139 + R Sbjct: 136 ESYDRI 141
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 94.1 bits (234), Expect = 2e-24 Identities = 36/128 (28%), Positives = 57/128 (44%) Query: 2 RLLVVEDDDVLLDGLRVGLQLAGFTVDAVMTLGDAKIALENCRFDAVVLDVMLPDGSGLD 61 +LV +DD + L L AG+ V + D VV DV++PD + D Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLRHTRNERNRVPILLLTAKDATTDKICGLDAGADDYLGKPFDLDEVAARLRAIIRRGEG 121 LL + R +P+L+++A++ I + GA DYL KPFDL E+ + + + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 RSEGTLSA 129 R Sbjct: 125 RPSKLEDD 132
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 29.2 bits (65), Expect = 0.037 Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 7/94 (7%) Query: 134 AEAPFGIRPQEPPAFQSFALIAPSAEPEK----AEQSVPSPVPPAEPGMVEGFLARGGTA 189 EAP I +P + +P++ E SP P A T+ Sbjct: 88 KEAPVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATS 147 Query: 190 LLLASFMGLGVLLAFTPCVFPMYPILAATLGRQG 223 + P YP A L +G Sbjct: 148 ---KPVTSVASGPRALSRNQPQYPARAQALRIEG 178
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.0 bits (78), Expect = 8e-04 Identities = 67/340 (19%), Positives = 130/340 (38%), Gaps = 23/340 (6%) Query: 40 IREIGLSNTV---YSLLMLFAAIINVSASVLMGIVADRLGEYRKPMLFIALFGVS-GYML 95 +R++ SN V Y +L+ A++ + + ++G ++DR G R+P+L ++L G + Y + Sbjct: 32 LRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFG--RRPVLLVSLAGAAVDYAI 89 Query: 96 VYLAGNATAFVSAKLILLPIFGAMNSLIFAHVRADARNLSTGDMIAVN-SIMRATISLSW 154 + ATA L + I + A A +++ GD A + M A Sbjct: 90 M-----ATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGM 144 Query: 155 VLVPGLVGIFLISSGNMLTAFLFSGLCALVCFLLVAFCLPRAATPAVAN-TEARFGLRAS 213 V P L G+ S + F + + FL F LP + AS Sbjct: 145 VAGPVLGGLMGGFSPHA--PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLAS 202 Query: 214 LAEIGSRRVLLRIIAIALICSML-HLNDSIRSLIITGQAKGTVADIGIVAGIVAALEIVF 272 V+ ++A+ I ++ + ++ + + IGI L + Sbjct: 203 FRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLA 262 Query: 273 -ILLWGWIEKKVPQTLTLAAGAVLYAVYLILQGLATAPWHIYAQTVISALGAAAIISIPI 331 ++ G + ++ + L G + IL AT W + V+ A G + ++ Sbjct: 263 QAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQ- 321 Query: 332 TYLQELIADRP-----GLGSSLIAVNIFLGAGLGALIFAL 366 L + + G ++L ++ +G L I+A Sbjct: 322 AMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAA 361
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 4e-29 Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 12/252 (4%) Query: 7 QLAVVTGAAGDIGRAIAAALSESHAKVVLVDIDADALSNALSQLSGPGFVAKT--CDVTD 64 ++A +TGAA IG A+A L+ A + VD + + L +S L A+ DV D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 65 PQDLARLAAEV-SELGDVATLVNNAGAARAVSLHDTTADIWRRDNALNLEAPFLCFRAFE 123 + + A + E+G + LVN AG R +H + + W ++N F R+ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 124 DALKRTR-GSVVNITS-VNGMAVFGHPAYSAAKAGLIHLTKLIAVEYGKFGIRSNAVAPG 181 + R GS+V + S G+ AY+++KA + TK + +E ++ IR N V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 182 TVRT----QAWEARAASNPQV---FEEAKHWYPLQRIVRPEDVASAVAFLAGPQAQAISG 234 + T W + + E K PL+++ +P D+A AV FL QA I+ Sbjct: 189 STETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHITM 248 Query: 235 VCLPVDCGLTAG 246 L VD G T G Sbjct: 249 HNLCVDGGATLG 260
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.011 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 32 VVFVGPSGCGKSTLLRMIAGLE 53 VV G G GKSTL+ + GL+ Sbjct: 599 VVLEGTGGIGKSTLINTLVGLD 620
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 109 bits (273), Expect = 1e-30 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 22/173 (12%) Query: 58 RRNAALIGAGIGALAGGAIGNYMDGQEAELRAQLQGTGVSVSRRGDSIVLNMPSNITFAT 117 R + ++ G+ G + ++Q + + S++ F Sbjct: 177 RPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQ-----------TKHFTLKSDVLFNF 225 Query: 118 DQDQVIPPFYQTLDSVGIVLNKFNRTL--IDINGHTDSTGSPGYNQGLSERRAASVANYL 175 ++ + P LD + L+ + + + G+TD GS YNQGLSERRA SV +YL Sbjct: 226 NKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYL 285 Query: 176 GARGVDQRRISTLGFGASQPIASN---------ATPDGRAQNRRVEVLISPLK 219 ++G+ +IS G G S P+ N A D A +RRVE+ + +K Sbjct: 286 ISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIK 338
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 35.2 bits (81), Expect = 4e-04 Identities = 56/293 (19%), Positives = 99/293 (33%), Gaps = 22/293 (7%) Query: 40 PKIPEFAARLSLSESA---LGLIILVFGIGSLVFMPIAGSQIARFGSRTVSLVTAAIFLP 96 P +P L S G+++ ++ + P+ G+ RFG R V LV+ A Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV 85 Query: 97 TLLFISWAGTIWAGVIAVFLFG--GLTGAMDVAMNANAVAVERDMRR-AIMSSCHAFWSL 153 ++ A +W I + G G TGA+ A A+ + R MS+C + Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSAC---FGF 142 Query: 154 GGLIGAGLGGYLITAIGVQG---HAVALTVIALVLLVIAWPRVLADRPHPEAERPKGGL- 209 G + G LGG + A AL + + P P L Sbjct: 143 GMVAGPVLGGLM-GGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLA 201 Query: 210 ------PLTPLPWIIGLMALFSMIPEGAILDWGALYLRNELGASVSQSGFAFAAFSMTMA 263 +T + ++ + + ++ + W ++ + + G + AAF + + Sbjct: 202 SFRWARGMTVVAALMAVFFIMQLVGQVPAALW-VIFGEDRFHWDATTIGISLAAFGILHS 260 Query: 264 -AMRFAGDLVRDRFGAVNTLRFCSVMSITGLLIAGLAGNSTFAIIGFAIAGIG 315 A V R G L + TG ++ A A + G Sbjct: 261 LAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASG 313
>ARGREPRESSOR#Bacterial arginine repressor signature. Length = 149 Score = 27.9 bits (62), Expect = 0.026 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 7/48 (14%) Query: 8 ERQALILAQLRQSGRVLAQD------LAQNFGVSEDTVRRDLREMAAR 49 +R I + + + QD + V++ TV RD++E+ Sbjct: 5 QRHIKIREIITAN-EIETQDELVDILKKDGYNVTQATVSRDIKELHLV 51
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 37.1 bits (86), Expect = 4e-04 Identities = 12/48 (25%), Positives = 22/48 (45%) Query: 1081 GNASHIGAPMPGVISRVFVNQGQEVKAGDVLLSIEAMKMETALHAERD 1128 G + I ++ + V +G+ V+ GDVLL + A+ E + Sbjct: 94 GRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQS 141
>PF07520#Virulence protein SrfB Length = 1041 Score = 33.4 bits (76), Expect = 0.018 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 2/109 (1%) Query: 1757 RGRSLREAAAFDTGATLSSTDGFTLDPILS-LRRTVRVPAGKKVSVIFWTIAAPSREEVD 1815 G + R A DT + + P + + + W + +E Sbjct: 142 TGHTHRVQIALDTALSDQDQSAHYVAPERADSEKPREFRLVSDPGAMSWFLQRLEADEDG 201 Query: 1816 KAIDRYRHPDAFAHELVHAWTRTQVQMRHVGVTSQQAAAFQHLGRYLTY 1864 A+D + E+ + R + R + F+H RYL+Y Sbjct: 202 NAVDLQLWVSDWLKEMFLDFKRAERPGRSISE-ENLPHMFEHWARYLSY 249
>SYCDCHAPRONE#Gram-negative bacterial type III secretion SycD chaperone signature. Length = 168 Score = 37.6 bits (87), Expect = 2e-05 Identities = 19/110 (17%), Positives = 36/110 (32%) Query: 98 AVMQQIAIANPADRDVLAAYGKAQAAAGQLEQALSTIQRAQTPDRPDWRLYSAEGAVLDQ 157 + + + + L + Q +G+ E A Q D D R + GA Sbjct: 23 GTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQA 82 Query: 158 LGRSNDARSRYRQALDLKPNDPSVLSNLGMSYVLSSDPRTAETYLQSAIA 207 +G+ + A Y + +P + + + AE+ L A Sbjct: 83 MGQYDLAIHSYSYGAIMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQE 132
>cloacin#Cloacin signature. Length = 551 Score = 30.1 bits (67), Expect = 0.014 Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 39 KRVQAAETDHANIKAARDRVQELSKRRKSMQDNLREMEKKQSEKAKKAKN 88 + Q A+TD N +AA D + + + E KK+ +K + A+N Sbjct: 395 LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAEN 444
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 36.7 bits (85), Expect = 2e-04 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 79 ASPTPNLIILETASAPGSLLDDLAPLAEVCDPSTRVIIVGRHNDITLYRDLIRNGISEYL 138 A+ +L++ + + D L + + P V+++ N G +YL Sbjct: 44 AAGDGDLVVTDVVMPDENAFDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYL 102 Query: 139 VAPVSMADLLGSIATIFVDPEAEPLGRNIAFIGAKGGVGSS 179 P + +L+G I +P+ P VG S Sbjct: 103 PKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDGMPLVGRS 143
>MALTOSEBP#Maltose binding protein signature. Length = 396 Score = 30.1 bits (67), Expect = 0.017 Identities = 84/366 (22%), Positives = 142/366 (38%), Gaps = 52/366 (14%) Query: 5 ISMAAVAVSISATSSMAATN----ITWWHGMGGRNGEVINEVSQKFNEAQKECALTPVSK 60 ++++A+ + + S++A + W +G G NG + EV +KF E +T Sbjct: 10 LALSALTTMMFSASALAKIEEGKLVIWINGDKGYNG--LAEVGKKF-EKDTGIKVTVEHP 66 Query: 61 GSYEEALASGIAAFRSGEQPNIL-QVFDAGAATIINAKGAVIPAEDLINKAGYKFDREAF 119 EE +AA +G+ P+I+ D + A I + Y F +A Sbjct: 67 DKLEEKFPQ-VAA--TGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDA- 122 Query: 120 INGVRYFYAAADGKFVGMPFNSSAPIMYINDEALKKAGVEAPKTWEEFEQVAPKLKEAGY 179 VRY +GK + P A + N + L PKTWEE + +LK G Sbjct: 123 ---VRY-----NGKLIAYPIAVEALSLIYNKDLLPNP----PKTWEEIPALDKELKAKG- 169 Query: 180 IPLVQSQLTWQFTENFFS------RNNIQFATNNNGYDSVSDTKLKV--TDPNLVMMFDK 231 +S L + E +F+ F N YD + D + L + D Sbjct: 170 ----KSALMFNLQEPYFTWPLIAADGGYAFKYENGKYD-IKDVGVDNAGAKAGLTFLVDL 224 Query: 232 LKDWKDKGLFAYYGAGWNDNQKPFEEGKVALWIGSSGSFGGLQKTATMPFSATFLPYWGS 291 +K+ Y A + F +G+ A+ I ++ + + + + T LP + Sbjct: 225 IKNKHMNADTDYSIA-----EAAFNKGETAMTINGPWAWSNIDTS-KVNYGVTVLP---T 275 Query: 292 IKGAGTNSFIG--GAALFAMSGKSEAENKCVADFFQFLTSPEIQ-VFYHKATGYVAITKA 348 KG + F+G A + A S E + + ++ LT ++ V K G VA+ Sbjct: 276 FKGQPSKPFVGVLSAGINAASPNKELAKEFLENY--LLTDEGLEAVNKDKPLGAVALKSY 333 Query: 349 AYEKAK 354 E AK Sbjct: 334 EEELAK 339
>PF06580#Sensor histidine kinase Length = 349 Score = 27.9 bits (62), Expect = 0.050 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 11/145 (7%) Query: 38 SFYLEDPFGFGASFVGLANYSDAIFNPEYLNIAKFTVVFTVLVTFFSLALGLLLAVKADA 97 ++ G+G + ++ +P+ + ++F + ++ +GL+L + Sbjct: 11 YYWYCQGIGWGVYTLTGFGFASLYGSPKLHS-----MIFNIAISL----MGLVLTHAYRS 61 Query: 98 VIRGSSAYKTLLISVYAIAPPVAGLIGMMFFDQHIGPFVKMAAFLGWDMKVGLNYFDTAF 157 I+ K + + P +IGM++F + + +A + L + Sbjct: 62 FIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSII 121 Query: 158 AMVV--VAVWKQIPYNFIFFLSGLQ 180 VV +W + + + FF + Q Sbjct: 122 FNVVVVTFMWSLLYFGWHFFKNYKQ 146
>PF05272#Virulence-associated E family protein Length = 892 Score = 35.0 bits (80), Expect = 5e-04 Identities = 14/33 (42%), Positives = 19/33 (57%) Query: 33 IVLVGPSGCGKSTLLRMVAGLEDISEGTVKIGD 65 +VL G G GKSTL+ + GL+ S+ IG Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGT 631
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 38.7 bits (90), Expect = 5e-05 Identities = 46/225 (20%), Positives = 71/225 (31%), Gaps = 49/225 (21%) Query: 139 AESGPEAAWAGAGIDILAPRSLIALANHFRGTQLLSRPTPAIRANPVNLPDLADIKGQES 198 + +A+ GA + P L L + L+ P + D + G+ + Sbjct: 87 FMTAIKASEKGAYDYLPKPFDLTELIGIIG--RALAEPKRRPSKLEDDSQDGMPLVGRSA 144 Query: 199 A----RRALEVAAAGGHNLLMVGPPGSGKSMLAARLPSILPPLEAAELLEVSMVHSIAGQ 254 A R L L++ G G+GK ++A L H Sbjct: 145 AMQEIYRVLARLMQTDLTLMITGESGTGKELVARAL------------------H----- 181 Query: 255 LSGGKLSDRR--PFRTPHHSATMAALIG------------GGLRAKPGEASLAHHGVLFL 300 RR PF + +A LI G G A G LFL Sbjct: 182 ----DYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFL 237 Query: 301 DEFPEFSPQVLDALRQPLETGECIIARANHRVSYPAEIQLVAAMN 345 DE + L + L+ GE R +++++VAA N Sbjct: 238 DEIGDMPMDAQTRLLRVLQQGE--YTTVGGRTPIRSDVRIVAATN 280