>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 91.8 bits (228), Expect = 7e-23 Identities = 75/283 (26%), Positives = 115/283 (40%), Gaps = 36/283 (12%) Query: 1 MKKRVAFAMTAVGLAAATAAHAQSSVTLYGIVDNGIAWQNNSSAVGATSGGHSKVQMSTG 60 MKK + A+ LAA A A + VTLYG + G+ + + GA + + V+ TG Sbjct: 1 MKKSL----IALTLAALPVA-AMADVTLYGTIKAGVETSRSVAHNGAQA---ASVETGTG 52 Query: 61 VW-AGSRFGLKGSEDLGGGTKAIFQLEAGVNTANGSSQWTNGIFTRQAWVGLTNATYGTL 119 + GS+ G KG EDLG G KAI+Q+E + A S W RQ+++GL +G L Sbjct: 53 IVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGW----GNRQSFIGL-KGGFGKL 107 Query: 120 TAGRQYTAYY--TLLSPYSPT-TWLTGYYGAHPGDIDSLDTSYRANNSLVYMSPKFYGFT 176 GR + ++P+ +L A P S+ Y SP+F G + Sbjct: 108 RVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLI---------SVRYDSPEFAGLS 158 Query: 177 VGGSYSFGGVAGATNRGSTWSAAIQYLNGPAGIAVGYQKVNNSTLGGGVWGANSTVQ--- 233 Y+ AG N ++ A Y NG + G + + V + Sbjct: 159 GSVQYALNDNAGRHN-SESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLV 217 Query: 234 -----NGLTAAGDGNQPAVSSINNGYATAQSQQRIAVTAGYQF 271 + L A+ Q + Y+ Q +A T Y+F Sbjct: 218 SGYDNDALYASVAVQQQDAKLVEENYSHNS-QTEVAATLAYRF 259
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 392 bits (1008), Expect = e-135 Identities = 148/469 (31%), Positives = 223/469 (47%), Gaps = 42/469 (8%) Query: 33 LRKELSRRDWKVSVVAHANELRD--TSGEITCGILDLSGGHADAIGSIASTCASMRDVVW 90 L + LSR + V + ++A L +G+ + D+ +A + Sbjct: 19 LNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLPR--IKKARPDL 76 Query: 91 VALVDVGQTASPNVRALLRDYCFDYVTLPASHQRIADTVGHAYGMECLFARDREQLESEE 150 LV Q +DY+ P + +G A E + Sbjct: 77 PVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPSKLEDDSQDG 136 Query: 151 KGIVGTCSAMLRLFDTVRRFARTDAPVFVFGETGTGKELTAVAIHRHSERRNGPFVAVNC 210 +VG +AM ++ + R +TD + + GE+GTGKEL A A+H + +RRNGPFVA+N Sbjct: 137 MPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINM 196 Query: 211 GAIPPHLLQSELFGYERGAFTGANARKIGYVEAANGGTLLLDEIGDLPHESQASLLRFLQ 270 AIP L++SELFG+E+GAFTGA R G E A GGTL LDEIGD+P ++Q LLR LQ Sbjct: 197 AAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQ 256 Query: 271 ERSIHRLGGSDPVPVDVRIVSATHVDLREAMEEGRFRADLFHRLCVMRIDQPPLRARGKD 330 + +GG P+ DVRIV+AT+ DL++++ +G FR DL++RL V+ + PPLR R +D Sbjct: 257 QGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAED 316 Query: 331 IELLAHHMLERFRGDARHRVRGFSTDAITALYKHDWPGNVRELINRVRRAVVMTEGRLIT 390 I L H +++ + V+ F +A+ + H WPGNVREL N VRR + +IT Sbjct: 317 IPDLVRHFVQQAEKEGL-DVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVIT 375 Query: 391 AQDLELEYCLDAASPSVA-------------------------------------DIRKS 413 + +E E + + + Sbjct: 376 REIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAE 435 Query: 414 IEREAIEIALLRTRGRVAASARELGVSRATLYRWMEAYGIERPRGTGSS 462 +E I AL TRG +A LG++R TL + + G+ R + S+ Sbjct: 436 MEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVSVYRSSRSA 484
>PF05211#Neuraminyllactose-binding hemagglutinin Length = 260 Score = 35.4 bits (81), Expect = 2e-04 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 19/92 (20%) Query: 188 FAFGDRQRIASVLSDSGWADVAIEPVDRMCV--------LPESALDDYIGRLGPVGFALL 239 F+F ++ ++ +G + + P + + L + LD G L P GF + Sbjct: 109 FSFAQKKEGYLAVAMNGE--IVLRPDPKRTIQKKSEPGLLFSTGLDKMEGVLIPAGFVKV 166 Query: 240 EVDEATRRRVIDT---------IRAAFERYVH 262 + E +D+ I+ F + H Sbjct: 167 TILEPMSGESLDSFTMDLSELDIQEKFLKTTH 198
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 45.3 bits (107), Expect = 4e-07 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 2/159 (1%) Query: 47 APVIRAEWGLSPAQLAPVFGAGLAGLMAGALVFGPFGDRFGRKRLLLVCVACFGIAS-AA 105 P I ++ PA V A + G V+G D+ G KRLLL + S Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 106 SASAGGLTELIVWRFVTGLGLGGAMPNAITLTSEYCPARRRSLLVTTMFCGFTIGSALGG 165 + LI+ RF+ G G + + + Y P R + +G +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 166 LAAASLIEHHGWRAVLVVGGVAPLLLLPLLAWRLPESVR 204 + + W +L++ + ++ +P L L + VR Sbjct: 157 AIGGMIAHYIHWSYLLLI-PMITIITVPFLMKLLKKEVR 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 36.4 bits (84), Expect = 2e-04 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 15/101 (14%) Query: 84 MGGIVFGHFGDRIGRKSMLMITLLLMGVPSMIIGLIPSYDSIGYWAAALLIAMRFLQGMA 143 +G V+G D++G K +L+ +++ S+I +G+ +LLI RF+QG Sbjct: 64 IGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI-------GFVGHSFFSLLIMARFIQG-- 114 Query: 144 VGGEWGGAVLMAV------EHAPKGRKGLFGSLPQTGVGLG 178 G A++M V + GL GS+ G G+G Sbjct: 115 AGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 40.2 bits (94), Expect = 1e-05 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 3/154 (1%) Query: 26 LPAISAGLHVSIAAAGQLTTIFSAVFALAALVAASFVARVERRTALLAALGAFAAANLCA 85 LP I+ + A+ + T F F++ V ++ + LL + ++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 86 AASPGYAS-LFAARVLMAASCATLILVATRFAAELAPVSQRGRAIGIVFMGISASLVLGV 144 + S L AR + A A + A P RG+A G++ ++ +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 145 PIGMRIAEWAGWRAVFV--SIAVAALPLGIWLAR 176 IG IA + W + + I + +P + L + Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLK 190
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 40.4 bits (94), Expect = 2e-06 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 7/188 (3%) Query: 14 ILLVAASRGLGLAMAEAFLNKGWHVTGTVREGSGRTKLHDLADRFDGRLEIGTLDICEPA 73 + A++G+G A+A ++G H+ K+ E D+ + A Sbjct: 11 AFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDSA 70 Query: 74 QLAALRARLSGR--RFDMLFVNAGTTN-DPNETIGEVTIDEFVRVMITNALAPMRVIETL 130 + + AR+ D+L AG ++ + + V T R Sbjct: 71 AIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR--SVS 128 Query: 131 QDLVTDDGLIGAMSSGQGSVANNVTGMREVYRGSKAALNQFMRSFAARQADTRRALALMA 190 + ++ G++ + + A Y SKAA F + A+ +++ Sbjct: 129 KYMMDRRS--GSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 191 PGWVRTEL 198 PG T++ Sbjct: 187 PGSTETDM 194
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 91.7 bits (227), Expect = 3e-24 Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 25/263 (9%) Query: 7 LQGKRVLVTGGTMGVGKAVVGLFRELGAKVLTTARTPPADTPADIFVAA----------N 56 ++GK +TG G+G+AV GA + P + A + Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 57 LATVEGCEAVAEAVMANFGGVDVIVHVVGGSRSPAGGFAALSEDAWQDELNLNLLPAVRL 116 + + + + G +D++V+V G R G +LS++ W+ ++N Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLR--PGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 117 DRALLPGMLAQRAGVVIHVTSIQHALPLPESTTAYAAAKAALSTYSKSLSKEVSPKGIRV 176 R++ M+ +R+G ++ V S +P S AYA++KAA ++K L E++ IR Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVP-RTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 177 IRVAPGWIETEAAVAFAERLAAQAGTDYEGGKQIIMDSLG----GIPLGRPSTPGEVANL 232 V+PG ET+ + D G +Q+I SL GIPL + + P ++A+ Sbjct: 183 NIVSPGSTETD--------MQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADA 234 Query: 233 IAFLASPRAASITGVEYVIDGGT 255 + FL S +A IT +DGG Sbjct: 235 VLFLVSGQAGHITMHNLCVDGGA 257
>BCTERIALGSPD#Bacterial general secretion pathway protein D signature. Length = 660 Score = 30.7 bits (69), Expect = 0.007 Identities = 9/33 (27%), Positives = 17/33 (51%) Query: 9 SLVDGDVAHNTRKVIDTIERVDVAGGTKLIVFP 41 L+ A ++++ +ERVD AG ++ P Sbjct: 166 VLLMTGRAAVIKRLLTIVERVDNAGDRSVVTVP 198
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 39.4 bits (92), Expect = 1e-05 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 13/143 (9%) Query: 84 GVRIHDFSHPH-WRDDVRIVLRASR-APAYITLPKIANAADAAEMTAFIEGTRREL---- 137 +R+ +R +R +LRAS + P IA + + A ++ + +L Sbjct: 360 AIRL-CLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEG 418 Query: 138 -GIAQPIPVDVLIETHGALAQAAALAALPTVGTLSFGLMDFVSAHHGAIPDSAMRSPGQF 196 ++ I V +++E A A V S G D + A + S + Sbjct: 419 VDVSDSIEVGIMVEIPSTAVAANLFA--KEVDFFSIGTNDLIQYTMAADRMNERVSY-LY 475 Query: 197 D--HPLVRRAKLEIAAACHAHGK 217 HP + R + A H+ GK Sbjct: 476 QPYHPAILRLVDMVIKAAHSEGK 498
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 48.7 bits (116), Expect = 2e-08 Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 20/174 (11%) Query: 5 IVNDLPLAVEALRRVIALRADHRVLWVATDGDEAVDFCVAHPPDVVLMDLVMPKVDGVAA 64 + +D L + RA + V + ++ + A D+V+ D+VMP + Sbjct: 8 VADDDAAIRTVLNQ-ALSRAGYDVR-ITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 65 TRRIMARAP-CAILIVTASVSANTSSVYEAMGAGALDAVDTPTLALGLSTDASPQALLAK 123 RI P +L+++A + T+ +A GA D P L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAI--KASEKGAYD------------YLPKPFDLTEL 111 Query: 124 IDQIGRLLESRTTALVPPGPAPTRGQPTLVAIGASAGGPTALTALLRALPADFP 177 I IGR L G P +G SA L R + D Sbjct: 112 IGIIGRALAEPKRRPSKLEDDSQDGMPL---VGRSAAMQEIYRVLARLMQTDLT 162
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.9 bits (184), Expect = 3e-16 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 645 RRRVLVVDDSLTVRELERKLLEKRGYDVTVAVDGMEGWNAVRSDAFDLVVTDVDMPRMDG 704 +LV DD +R + + L + GYDV + + W + + DLVVTDV MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 705 IELVTLIKGDPMLKRVPVMIVSYKDRDEDRRRGLDAGADYYLAKSSFHDEALLDAVHDL 763 +L+ IK +PV+++S ++ + + GA YL K E + L Sbjct: 63 FDLLPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 81.4 bits (201), Expect = 5e-19 Identities = 50/373 (13%), Positives = 104/373 (27%), Gaps = 84/373 (22%) Query: 62 VGGDVTVLAPKVNGFVDKILVTDNQRVKAGDV------------LVQLDARDYDAKLAQA 109 G + P N V +I+V + + V+ GDV ++ + A+L Q Sbjct: 92 HSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQT 151 Query: 110 S-----------------------------AEVDSARSAVTELEAKQQLQFAVIGQHAAD 140 EV S + E + Q Q + Sbjct: 152 RYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDK 211 Query: 141 KNASSAELTRAASDRVR-----------YRELVKSDAVSNQIVERADADYSKAGAAVE-- 187 K A + + + L+ A++ V + Y +A + Sbjct: 212 KRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVY 271 Query: 188 --------------RSDAALLASKRQLDVLGAQLADARARVNTALAAQRVAALNVEYTTI 233 + + L+ + ++L +L + + + I Sbjct: 272 KSQLEQIESEILSAKEEYQLVTQLFKNEILD-KLRQTTDNIGLLTLELAKNEERQQASVI 330 Query: 234 RSPVDGYVGN-RTGRVGMLANVGVPLLTVVPAS-GLWIDANFKEDQLRKMRAGDRVDVAL 291 R+PV V + G + L+ +VP L + A + + + G + + Sbjct: 331 RAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKV 390 Query: 292 DA----SSTRLHGRVDSLAPATGATFSVLPPENATGNFTKIVQRVPVRVHLDPQPGIKHV 347 +A L G+V ++ + G ++ + I Sbjct: 391 EAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGNKNIP-- 441 Query: 348 LRPGLSAVVTVHT 360 L G++ + T Sbjct: 442 LSSGMAVTAEIKT 454
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 95.3 bits (237), Expect = 5e-23 Identities = 90/411 (21%), Positives = 153/411 (37%), Gaps = 27/411 (6%) Query: 24 MCVGFFMATLDIQIVASSLRDIGGGLSASQDELSWVQTAYLIAEIIVIPMSGWLSKVMST 83 +C+ F + L+ ++ SL DI + +WV TA+++ I + G LS + Sbjct: 19 LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78 Query: 84 RWLFAASAVGFTITSMLCGLAWDINSMILF-RGLQGALGAAMIPTVFTTAFVLFPGRQRL 142 + L + S++ + S+++ R +QGA AA V P R Sbjct: 79 KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138 Query: 143 IASTTIGALASLAPAIGPVIGGWITDQWSWHWLFYLNLVPGIAVAALVPRYVHIDAPDLS 202 A IG++ ++ +GP IGG I W +L L+P I + VP + + ++ Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL---LIPMITIIT-VPFLMKLLKKEVR 194 Query: 203 LIKRGDYLGIALMSGFLGCLEYVLEEGPRKNWFGDDAIVICAWISGICGFLFIVHALTAK 262 + D GI LMS + F + +S + +F+ H Sbjct: 195 IKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVT 244 Query: 263 DPIVDLRALAVRNFGIGSLLSFVTGIGIFVTVFLTPLFLAQVRAFSSLQIG-----IALL 317 DP VD F IG L + + V + P + V S+ +IG + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 318 SVGAFQLIA-LCAYAFAARYVSMRALLVFGLICFGLGCYLYTPITHDWGWQELLLPQALR 376 SV F I + YV + + + T W + +++ L Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTAS---FLLETTSW-FMTIIIVFVLG 360 Query: 377 GIGQQFSVPPIVTMALGSLPQSRLKSASGLFNLMRNLGGAIGIAVSATMLN 427 G+ F+ I T+ SL Q + L N L GIA+ +L+ Sbjct: 361 GLS--FTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLS 409
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 32.2 bits (73), Expect = 0.010 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 51/190 (26%) Query: 658 MTKGEPGFAGIGAIFSAINLRFAREELKKANRFNQTEAGIKFDNAV-GGLVAGVAQYGSS 716 + G + I SAI+ F A+ + AG++ V G + G++QY Sbjct: 235 LDNIGAGLDTVSGILSAISASFILSN-ADADTRTKAAAGVELTTKVLGNVGKGISQY--- 290 Query: 717 ALEQMEKAGVKLSESTAKVGRFLGIVGRFGGAIVGLVSAAI---------DAYHAYDELE 767 + Q G L G I V+ AI D + +++E Sbjct: 291 IIAQRAAQG-------------LSTSAAAAGLIASAVTLAISPLSFLSIADKFKRANKIE 337 Query: 768 -----------HGNILMFALYTTSALIGGAL-------------VVAAFLGSVLTLPLLL 803 G+ L+ A + + I +L + AA S++ P+ Sbjct: 338 EYSQRFKKLGYDGDSLLAAFHKETGAIDASLTTISTVLASVSSGISAAATTSLVGAPVSA 397 Query: 804 LAALIGVLIN 813 L + +I+ Sbjct: 398 LVGAVTGIIS 407
>PF08280#M protein trans-acting positive regulator Length = 530 Score = 29.4 bits (66), Expect = 0.021 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 15/68 (22%) Query: 9 LQCLVAF-EAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREHRSLRL---- 63 LQ L + T A L+ S+ R + L L R+ L Sbjct: 122 LQLLAFLIKNGSHSRPLTDFARSHFLSNSSAYRMREALIPLL---------RNFELKLSK 172 Query: 64 -TIAGEQY 70 I GE+Y Sbjct: 173 NKIVGEEY 180
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 51.0 bits (122), Expect = 4e-09 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 30/286 (10%) Query: 82 VLGVYADKVGRKAALSLTILLMAAGTALIGIAPTYEQAGIAAPLMIVVARLLQGFSAGGE 141 VLG +D+ GR+ L +++ A A++ AP ++ + R++ G + G Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIVAGIT-GAT 112 Query: 142 MSGATAFLTEYAPPEKRAYYSSWIQSSIGFAVLLGAATGTFVTTSLDTQALHSWGWRLPF 201 + A A++ + ++RA + ++ + GF ++ G G + + PF Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGL---------MGGFSPHAPF 163 Query: 202 ----LLGIIVGPVGYFI--RSHIDETPAFSAVESQAKESSPLKEVLHTYPRETFASFSMV 255 L + G F+ SH E S + F M Sbjct: 164 FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQ 223 Query: 256 ILWTVCTYVLLFYMPTYSVRTLHL-PQSTGFTAGMVGGLMIMCCSPIVGRLADAWGRRVF 314 ++ V + + + H + G + G L + + I G +A G R Sbjct: 224 LVGQVPAALWVI----FGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRA 279 Query: 315 LSGSALAILVLAWPMFSWINHAPGFASLIVFQAVFGVLIATYTGPI 360 L +A + + ++ ++V A G+ + + Sbjct: 280 LMLGMIAD-GTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAML 324 Score = 29.0 bits (65), Expect = 0.038 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Query: 293 LMIMCCSPIVGRLADAWGRRVF----LSGSALAILVLAWPMFSWI 333 LM C+P++G L+D +GRR L+G+A+ ++A F W+ Sbjct: 54 LMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWV 98
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 63.8 bits (155), Expect = 4e-14 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 34/166 (20%) Query: 67 GGAATAAVDTAKADPAPPWLALLDSLKSNGRISLVKAPHGVEIGIDAKILFNVGDARLLP 126 G A V PAP V+ H + + +LFN A L P Sbjct: 192 GQGEAAPVVAPAPAPAPE----------------VQTKHFT---LKSDVLFNFNKATLKP 232 Query: 127 DSSPVLNQIAQALSAH--TTGDILVEGHTDSVPIANAKYESNWELSSARAGSVVRYLSER 184 + L+Q+ LS G ++V G+TD I + Y N LS RA SVV YL + Sbjct: 233 EGQAALDQLYSQLSNLDPKDGSVVVLGYTDR--IGSDAY--NQGLSERRAQSVVDYLISK 288 Query: 185 GVAPHRLAAIGRADTQPLVAGGDAGSRAR---------NRRVTIFV 221 G+ +++A G ++ P+ + R +RRV I V Sbjct: 289 GIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>SECA#SecA protein signature. Length = 901 Score = 32.2 bits (73), Expect = 0.005 Identities = 32/206 (15%), Positives = 69/206 (33%), Gaps = 34/206 (16%) Query: 231 RVIDRAQQVADHDLDVSINSELELIELADLESLIGVDKTLLLNKLSNGEIAEEVFAFRKS 290 + + V +D I + L E+ D+ L K L E ++ + Sbjct: 675 TINSIREDVFKATIDAYIPPQ-SLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEE 733 Query: 291 KVLNYVEQKGV-AYFSRRNGRRGGDVRALE--------DLVWIDQRTLFDVISAFDTYDL 341 + + + + Y + +R E D +W + + Sbjct: 734 TLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEH-----------LAAM 782 Query: 342 AKLIANLDDRAVADK------------LFSVMTEA-RRNEVSWVMRRELKLDPVEIDEIE 388 L + R A K +F+ M E+ + +S + + ++++ + + Sbjct: 783 DYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQ 842 Query: 389 QRVLEAVRVAKAPAAGATAVASASAS 414 QR +EA R+A+ SA+A+ Sbjct: 843 QRRMEAERLAQMQQLSHQDDDSAAAA 868
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 41.5 bits (97), Expect = 3e-07 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 107 QGTGAGRALFDAALEYLAETRPGPVWLGVWSGNAKAIAFYEKAGFKRVGTYD 158 + G G AL A+E+ E + L N A FY K F +G D Sbjct: 102 RKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF-IIGAVD 152
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 107 bits (269), Expect = 2e-30 Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 9/253 (3%) Query: 3 LKSKSALITGGTSGIGLATAKRFIAEGARVAVTGRDESVFERVKAEL---GEHAVVLKGD 59 ++ K A ITG GIG A A+ ++GA +A + E+V + L HA D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 60 VRSLDDMRVIAGEVNERFGGLDVVFANAGWAFPSAVNDIDDTLYNDIMDVNVKGVVFTLQ 119 VR + I + G +D++ AG P ++ + D + VN GV + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 120 AALPYL--REGSSVILNTSFVAQTGKHGISLTAAAKAAVRSLARSWSYEFLDRKIRFNAI 177 + Y+ R S++ S A + ++ A++KAA + E + IR N + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 178 APGAIDTPL-LSKWGKPD---EWVRDRKAEFAETIPVGRMGHADDIAYAALYLASDESSF 233 +PG+ +T + S W + + ++ F IP+ ++ DIA A L+L S ++ Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 234 VVGTELVVDGGAS 246 + L VDGGA+ Sbjct: 246 ITMHNLCVDGGAT 258
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 68.7 bits (168), Expect = 4e-15 Identities = 73/350 (20%), Positives = 123/350 (35%), Gaps = 38/350 (10%) Query: 1 MKKMIAATLVGALCASAHAQSSVTLFGRIGGGVRWVNGLPG------GSQIGFNNIIAGN 54 MKK + A + AL +A A VTL+G I GV + + G + G+ Sbjct: 1 MKKSLIALTLAALPVAAMAD--VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGS 58 Query: 55 EFGIRGREDLGNGLKALFVLDGAFNSGTGALKTSGTLFSQAAYVGLAGDFGRLTLGRQFN 114 + G +G+EDLGNGLKA++ ++ T ++ +++GL G FG+L +GR + Sbjct: 59 KIGFKGQEDLGNGLKAIWQVE----QKASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNS 114 Query: 115 VAEDLGIALDPLGGRGQSLAVEPGVLFDGNFFTLDSRFNNTIKYLG-QVGGLRFGANYSP 173 V +D G ++P + N +++Y + GL Y+ Sbjct: 115 VLKDTG-DINPWDSK--------SDYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYAL 165 Query: 174 GGVAGRSHAGTSYSTAAMYTYSDLMGGVSYAKTYSPDGSQSA--QTIQA-GGTLQLGRAR 230 AGR + SY Y A ++ + Q Sbjct: 166 NDNAGRHN-SESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDA 224 Query: 231 FYLSYASLNVRANKAGAPSRRDDIPSFGVVAQPLPSV-QLSAAAFYDRARNLGNVSGADG 289 Y S A + K + + V A ++ Y G+ + Sbjct: 225 LYASVAV-QQQDAKLVEENYSHN-SQTEVAATLAYRFGNVTPRVSYAHGFK-GSFDATNY 281 Query: 290 HKLTTYAI--AEYFLSKRTELYVE---IDRNGLTGAYMRDPATIAALNLR 334 + + AEY SKRT V + ++ +T + LR Sbjct: 282 NNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFV---STAGGVGLR 328
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.9 bits (75), Expect = 0.002 Identities = 58/351 (16%), Positives = 119/351 (33%), Gaps = 42/351 (11%) Query: 85 VFGHVGDRYGRKASLVWTLLIMGASTFAIGLLPTYAQVGLWAPAALVVLRLLQGIASGGE 144 V G + DR+GR+ L+ +L + P LW L + R++ GI +G Sbjct: 62 VLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPF-----LW---VLYIGRIVAGI-TGAT 112 Query: 145 WGGGVLMISENAPPEQRGYYAAWSQLGVGGGFVLSSAA--FLAAQALPDDAFRTWGWRLP 202 I++ ++R + + G G V + + P Sbjct: 113 GAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG----------FSPHAP 162 Query: 203 FLASVAI----FAIGIYIRR--HLPESRDFEQAGKRGAHAHLPIVECIRRHPKEILLAMG 256 F A+ A+ F G ++ H E R + A + + + Sbjct: 163 FFAAAALNGLNFLTGCFLLPESHKGERRPLRREAL-NPLASFRWARGMTVVAALMAVFFI 221 Query: 257 LRVAENGGAYIFLAFSLVYGKYLGIPNGTMLTGVMIAMIVEMGAMLAWGRLSDRIGRKPV 316 +++ A +++ F + G L I + + G ++ R+G + Sbjct: 222 MQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQA--MITGPVAARLGERRA 279 Query: 317 YLIGALSLVACAFPFFWLLDTRVTPLVWLALTVGTAVSHGAMIGTLPALVGELFSTEV-- 374 ++G ++A + L + + + + ++ G + +PAL + S +V Sbjct: 280 LMLG---MIADGTGYILLAFATRGWMAFPIMVL---LASGGIG--MPALQA-MLSRQVDE 330 Query: 375 RYSGVALGHEVASIFAGGM-SPLIATALLARYHASWPVSLFLIALGLVTVA 424 G G A + PL+ TA+ A +W ++ L + Sbjct: 331 ERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLC 381
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 88.2 bits (218), Expect = 6e-23 Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 18/240 (7%) Query: 25 RVVLVTGAARGLGAVIAERFHAAGYRVALADIAADAIHAHARDLDPSGERAIALPLDVTS 84 ++ +TGAA+G+G +A + G +A D + + L A A P DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 85 KRDFEAARDALVARW----GTIDVLVNNAGASKVVPAMEITAEQFDQVIDVNLRSVLFGC 140 AA D + AR G ID+LVN AG + ++ E+++ VN V Sbjct: 69 S----AAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 141 QVFGQYFAQRGAGRIVNIASLAGQNGGSATGAHYAAAKGGTLTLTKVFARDLAAQGVTVN 200 + +Y R +G IV + S ++ A YA++K + TK +LA + N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAA-YASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 201 AISPGPLDLPIVY---------ESVAPEKLRQVLASLPGGKLGSAGFVADAAVLLASGDA 251 +SPG + + + E V L +P KL +ADA + L SG A Sbjct: 184 IVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQA 243
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 104 bits (260), Expect = 3e-28 Identities = 36/150 (24%), Positives = 69/150 (46%) Query: 4 PAPIVYIVDDDSGMRTSLAWLLESVGIASEGFANAADFLARFDVNLPACLVLDVRMPEKS 63 + + DDD+ +RT L L G +NAA +V DV MP+++ Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 64 GFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRALRL 123 FD+ + LPV+ +S +++A + GA D++ KP++ +++ + RAL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 124 AQQRHAVSQRHRELRQRLDALTAREKEVLR 153 ++R + + + L +A +E+ R Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYR 151
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 9e-04 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 84 VSEAARGRGVARLMCEHSQQVARERGFLAMQFNSVVATNEVAVALWQKLGFEIVG 138 V++ R +GV + + + A+E F + N A + K F I Sbjct: 97 VAKDYRKKGVGTALLHKAIEWAKENHFCGLML-ETQDINISACHFYAKHHFIIGA 150
>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase signature. Length = 572 Score = 27.1 bits (60), Expect = 0.030 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%) Query: 2 ITLDDVD---RQLIALLRDNAR------LPVVALAKELRVARATVQNRLTRLEKNGVIVG 52 + L+ D QL ALLR + P++A +ELR A+A +Q +L GV V Sbjct: 363 LCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDVS 422 Query: 53 YTVRL 57 ++ + Sbjct: 423 DSIEV 427
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 42.8 bits (101), Expect = 5e-06 Identities = 59/279 (21%), Positives = 99/279 (35%), Gaps = 88/279 (31%) Query: 1 MKRYTVGIDLGTSNTVVAYVEAGSDAIRVFDVEQLVGPGAMAAQPLLPSVRYHPAAGELP 60 M + IDLGT+NT++ YV+ + PSV Sbjct: 8 MFSNDLSIDLGTANTLI-YVKGQGIVLNE------------------PSV---------- 38 Query: 61 PDALRLPWAADPKVNTKANAADAPAAV--IGRYARMLGAQVPGRLVSSAKSWLSHAAVDR 118 V + + A +P +V +G A+ + + PG + Sbjct: 39 -------------VAIRQDRAGSPKSVAAVGHDAKQMLGRTPGNIA-------------- 71 Query: 119 LAAILPWGAADGVDKVSPVDASASYLAHV--RDAWNARFPDAPLAQQDVILTVPASFDDG 176 AI P DGV ++ + L H + N+ +P V++ VP Sbjct: 72 --AIRP--MKDGV--IADFFVTEKMLQHFIKQVHSNSFMRPSP----RVLVCVPVGATQV 121 Query: 177 ARALTVEAARRAKLPALRLLEEPQAAFYDWLYGQRDMLRDTFTAARRVLICDVGGGTTDL 236 R E+A+ A + L+EEP AA G + A ++ D+GGGTT++ Sbjct: 122 ERRAIRESAQGAGAREVFLIEEPMAAAIG--AGLP------VSEATGSMVVDIGGGTTEV 173 Query: 237 TLVDVAPGDDGEPTFTRVGVGNHLMLGGDNMDLALARLV 275 ++ + V + + +GGD D A+ V Sbjct: 174 AVI----------SLNGVVYSSSVRIGGDRFDEAIINYV 202
>BCTLIPOCALIN#Bacterial lipocalin signature. Length = 171 Score = 30.4 bits (68), Expect = 0.008 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 29/91 (31%) Query: 287 DGALERHLPRITAAYRRKCDAMCDALRDGFGDAIEFHRPEGGMFVWARLGAVSTDVLLQQ 346 D + ER L ++TA YR + D L G+ E G + ++ Sbjct: 45 DHSFERGLSQVTAEYRVRNDGGISVLNRGYS-------EEKGEW--------------KE 83 Query: 347 AIANKIVFVPGKAFFADNVDAASLRLSFAAP 377 A GKA+F + L++SF P Sbjct: 84 A--------EGKAYFVNGSTDGYLKVSFFGP 106
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 31.5 bits (71), Expect = 6e-04 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 9/59 (15%) Query: 67 VVDIAVLPIHQKKGVGDLIMRALMDYIHENAP-----PTAYVSLMADHGTPKFYERYGF 120 + DIAV ++KKGVG ++ +++ EN T +++ A H FY ++ F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACH----FYAKHHF 146
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.9 bits (93), Expect = 8e-07 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 78 VDAIFVRPSHMGRGIGRTMLRFLEALAAEHGVVEMRLDATLNAAP---FYRSCGWTGDSI 134 ++ I V + +G+G +L A E+ + L+ FY + ++ Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAV 151 Query: 135 STY 137 T Sbjct: 152 DTM 154
>PF05043#Transcriptional activator Length = 493 Score = 31.5 bits (71), Expect = 0.005 Identities = 15/55 (27%), Positives = 31/55 (56%) Query: 22 KIRHLVLLLQIQQHGSLTRVAEHMASSQPAVTNALSELESMFGTPLFERSSRGMR 76 ++ L LL + ++ + +AE + ++ AV + LS ++S F +F S+ G+R Sbjct: 12 QLELLELLFEHKRWFHRSELAELLNCTERAVKDDLSHVKSAFPDLIFHSSTNGIR 66
>PF07212#Hyaluronoglucosaminidase Length = 336 Score = 30.8 bits (69), Expect = 0.011 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%) Query: 146 ALPVSIDALREQGRREAPHGRATAASIAYINFTSGSTGQ 184 A +SID +++Q G+ TAA YIN TSG+TG+ Sbjct: 238 AAALSIDIVKKQK-----GGKGTAAQGIYINSTSGTTGK 271
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 42.6 bits (100), Expect = 2e-06 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 20 VCALLFFATVINYMDRQILGLLAPMLQHDIGWSQVQYGRIVMAFSAFYALGLLGFGRIVD 79 +C L FF+ ++ +L + P + +D + AF +++G +G++ D Sbjct: 19 LCILSFFSV----LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSD 74 Query: 80 WLGTRVSYAVAMLVW---SIAAMLHAAVGSVTGFAFVRALLGIGEGGNFPAAIK-TTAEW 135 LG + +++ S+ + + S+ A R + G G FPA + A + Sbjct: 75 QLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMA--RFIQGAG-AAAFPALVMVVVARY 131 Query: 136 FPRRERALATGIFNSGANIGAVFAPAIIPAIAVAYGWRAAFVI 178 P+ R A G+ S +G PAI IA W +I Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI 174
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 75.3 bits (185), Expect = 5e-18 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 7/164 (4%) Query: 2 PRVAIVEDHERLAGLLSQALAAAGIESDRFGNAREAAYGVDRADYALLIIDRGLPDGDGL 61 + + +D + +L+QAL+ AG + NA + D L++ D +PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 AFLRTLRAAGRMMPCLMLTARDALHDRIDGLESGADDYVTKPFEMSELVARVRTLM---- 117 L ++ A +P L+++A++ I E GA DY+ KPF+++EL+ + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 118 -RRPALLTTLVASFADVTVDPPQRAMRCGDRTVLLAPAELQIML 160 R L V + + L +L +M+ Sbjct: 124 RRPSKLEDDSQDGMPLVGRSAAMQEIY--RVLARLMQTDLTLMI 165
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 41.7 bits (97), Expect = 2e-06 Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 55/192 (28%) Query: 83 DHDVYLKPKLAAHDTNLIVRTDRRSYSFDLLV----------LPLKERFGNAHEMYRV-- 130 D+ + L P +A TNL+VRT++ Y F L + L +K + HE+ V Sbjct: 265 DNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVSSVIE 324 Query: 131 ------------------------SFVYPDTAASDVSI-------------------AAR 147 +++ AS+ I A Sbjct: 325 EELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKALE 384 Query: 148 LACLQKRLSQPSVVRNAAYSMQVMPHAEDIAPSAVWDDGRFTYIRIPNNRRIPAIFQVED 207 + L + V RN Y ++ I PS ++DDG FTY N PAIF V+ Sbjct: 385 TQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQP 444 Query: 208 DDTERVVDKHMD 219 D + D +D Sbjct: 445 DGKLSMTDAAID 456
>PF04335#VirB8 type IV secretion protein Length = 227 Score = 193 bits (493), Expect = 2e-64 Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 9/220 (4%) Query: 4 QSDYRRALDFEASLTALQACSERRAWQVAFAAVIVAIGSAAALAVMTPFYRVVPLPIEVN 63 ++ + A +E A S++ AW VA A +A A+A +TP V P I V+ Sbjct: 11 KAYFEEAASWERDKLAAAERSKKLAWVVAGVAGALATAGVVAVAALTPLKTVEPYVITVD 70 Query: 64 KLTGEAQLIEVLDA-KHVPLREIEDKHWVEVYVRARERYDWGLLQMDYDRVLEMSDESVA 122 + TGEA + L + E K+++ YVR RE + + +D V+ MS Sbjct: 71 RNTGEASIAAKLHGDATITYDEAVRKYFLATYVRYREGWIAAAREEYFDAVMVMSARPEQ 130 Query: 123 RAYRQIYSG--PNALDQQLGASVQYRTRIVSTTLVPDEPGHAVVHLERTVRKNGIDTGEP 180 + + Y P + L I + + A V+ + + Sbjct: 131 DRWSRFYKTDNPQSPQNILANRTDVFVEIKRVSFLGGNV--AQVYFTKESVT---GSNST 185 Query: 181 AKRFVITLAFTYRPTVLVRERSAIENPFGFKVTAYSRDAE 220 V T+ + T +E +NP G++V +Y D E Sbjct: 186 KTDAVATIKYKVDGTPS-KEVDRFKNPLGYQVESYRADVE 224
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 29.0 bits (65), Expect = 0.018 Identities = 3/29 (10%), Positives = 11/29 (37%) Query: 75 INRENWSRYGLTVGTVFDVCRNLSAGAAI 103 +++E G+++ + G + Sbjct: 730 VDQEKAQALGVSLSDINQTISTALGGTYV 758
>OUTRMMBRANEA#Outer membrane protein A signature. Length = 346 Score = 36.8 bits (85), Expect = 4e-05 Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 20/142 (14%) Query: 68 GGPDTGSNVTGSLGLGYQFGNGWRAEGEYV-FKRTNNFTSYWAPFDANANEFHVSAQRLM 126 GP + + GYQ E Y R P+ + AQ + Sbjct: 48 NGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGR--------MPYKGSVENGAYKAQGVQ 99 Query: 127 LNGYKDFDLGRGFSVYGTLGIGVAIVSADGWQTNDTRRFASKTQTNLAYS--AGAGVSYA 184 L + + +Y LG V DT+ + S GV YA Sbjct: 100 LTAKLGYPITDDLDIYTRLGGMVW--------RADTKSNVYGKNHDTGVSPVFAGGVEYA 151 Query: 185 INKRFSIDLGYRYV-DMGNVET 205 I + L Y++ ++G+ T Sbjct: 152 ITPEIATRLEYQWTNNIGDAHT 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 104 bits (261), Expect = 2e-28 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 1/154 (0%) Query: 10 DRPIVAIVDDDEPVRDGLALLLRTVGLPTRCYADAQAFLADADDRALGCVLLDLRMPGMS 69 + + DDD +R L L G R ++A V+ D+ MP + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 70 GLDALDRLSARRA-LPVIVLTGHGNVDACRRAFKRGALDFLRKPVDDDELIDTVQQALRR 128 D L R+ R LPV+V++ +A ++GA D+L KP D ELI + +AL Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 129 QAAQRGQDDAGQTRAARVATLSAREREVLEGIVR 162 + + + + SA +E+ + R Sbjct: 122 PKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLAR 155
>PF06580#Sensor histidine kinase Length = 349 Score = 30.6 bits (69), Expect = 0.013 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 16/102 (15%) Query: 374 ILHNLIRNA-RDALAGMP-LGEIRISGGRAGRHYRFSVVDNGPGVPDDALPRLFEPFFTT 431 ++ L+ N + +A +P G+I + G + V + G + T Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKN----------TK 308 Query: 432 RENGLGLGLPLCDTLAQR--QDGSLMIRNRPSGGVEATLLLP 471 G GL + + L + + + + G V A +L+P Sbjct: 309 ESTGTGLQN-VRERLQMLYGTEAQIKLSEKQ-GKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 5e-20 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 2/137 (1%) Query: 771 AARVLVVDDHPVNRTLQQSQLVTLGYAADAADDGASALRRCADTRYDLVMTDLNMPGMDG 830 A +LV DD RT+ L GY + A+ R A DLV+TD+ MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 831 YTLARVLRARYPDLPVIAITAHASAAEHARCAEAGIVAVLVKPVLLDTIDRTVRRFAKIS 890 + L ++ PDLPV+ ++A + + +E G L KP L + + R ++ Sbjct: 63 FDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR--ALA 120 Query: 891 ATSRPARNTLVDLAEGP 907 R D +G Sbjct: 121 EPKRRPSKLEDDSQDGM 137
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 68.8 bits (167), Expect = 7e-14 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 14/205 (6%) Query: 509 GSDSVATGPQSTAIGTSATANSTGSVALGNGATSSGANATAIGRLATAGAANATVLGGSA 568 G ++ A G S AIG +A A +VA+G G+ ++G N+ AIG L+ A +A G ++ Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 569 TA------------TGQSAIAIGQSAHANGLSAIGIGFLSDAQADN--SVALGARSVANR 614 TA T + +A+G ++ A+ +++ IG S A++ S+A+G RS +R Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 615 DNTVSVGSASQQRQIVNVAAGTQGSDAVNVSQLAPVVTALGGGATIDSATGAVTGPTYTL 674 +N+VS+G S RQ+ ++AAGT+ +DAVNV+QL + SA Y Sbjct: 182 ENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYAD 241 Query: 675 TNGGAQTTVGGALGALDSALTTANG 699 + + SA T N Sbjct: 242 NKSSSVLGIANNYTDSKSAETLENA 266 Score = 63.0 bits (152), Expect = 5e-12 Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 3/217 (1%) Query: 106 NAALAADSATAIGANASAAGQSSVAIGGNTMAT-VNGVAIGTLSQATGANSTAVGVGAAA 164 NA+ + AIGA A AA ++VA+G ++AT VN VAIG LS+A G ++ G + A Sbjct: 64 NASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTA 123 Query: 165 TASAASALGRGAAASGTNTSAFGNGARASGDSASALGRGAVASEANSVALGANSTADRAN 224 + R + + F + A A A A+ S+A+G S DR N Sbjct: 124 QKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDREN 183 Query: 225 AVSVGTTSAQRQIINVADGTAGTDAVNLNQLNAAIAASDQYFMVNSTSANLANATGANAV 284 +VS+G S RQ+ ++A GT TDAVN+ QL I + + N SA L A A Sbjct: 184 SVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQEN--TNKRSAELLANANAYAD 241 Query: 285 AIGQAVTSSGSSSVAIGSGTSADGLHSMALGASSRVV 321 +V ++ S + + A S V+ Sbjct: 242 NKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVL 278 Score = 43.0 bits (100), Expect = 8e-06 Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 1391 GSLVVGDGSAASGENSSAIGQGSAASGDGSTAVGQGSNASGGNSSAIGQGSNASGSNSS- 1449 ++ VG GS A+G NS AIG S A GD + G S A + G+ AS S++ Sbjct: 85 AAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTA---QKDGVAIGARASTSDTGV 141 Query: 1450 AIGQGAVASGDSSTAIGQGS--SATGSGSVAIGAGSVATEANTVSFGDGTAEGNRRLVNI 1507 A+G + A +S AIG S +A S+AIG S N+VS G + NR+L ++ Sbjct: 142 AVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESL--NRQLTHL 199 Query: 1508 ADGVNASDAATKGQLDRAINGMQGQINDVAKNAYAGVAA 1546 A G +DA QL + I Q N + A A Sbjct: 200 AAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANA 238 Score = 42.2 bits (98), Expect = 1e-05 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 6/100 (6%) Query: 276 ANATGANAVAIGQAVTSSGSSSVAIGSGTSADGLHSMALGASSRVVGDSNLAVGDGATVT 335 A+A G +++AIG ++ ++VA+G+G+ A G++S+A+G S+ +GDS + G Sbjct: 65 ASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAA---- 120 Query: 336 SLTTAPTNAIAIGKGANVSDAGVAGATGSIAIGTNAAAGG 375 +TA + +AIG A+ SD GVA S A N+ A G Sbjct: 121 --STAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIG 158 Score = 40.3 bits (93), Expect = 7e-05 Identities = 36/128 (28%), Positives = 63/128 (49%) Query: 411 GINSAAAGNASVAMGPNATAAGAGSIVIGNQAATTAANSVALGNAATGSAVNTTAIGSNA 470 G+N++A G S+A+G A AA ++ +G + T NSVA+G + + G+ + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 471 KATGNNSTVLGQSSSASGLSAVGIGFRANASGQEAISLGSDSVATGPQSTAIGTSATANS 530 A + + ++S++ AVG +A+A AI S A S AIG + + Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 531 TGSVALGN 538 SV++G+ Sbjct: 182 ENSVSIGH 189 Score = 37.2 bits (85), Expect = 5e-04 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 1410 GQGSAASGDGSTAVGQGSNASGGNSSAIGQGSNASGSNSSAIGQGAVASGDSSTAIGQGS 1469 G ++A G S A+G + A+ G + A+G GS A+G NS AIG + A GDS+ G S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 1470 SATGSGSVAIGAGSVATE 1487 +A G VAIGA + ++ Sbjct: 122 TAQKDG-VAIGARASTSD 138 Score = 35.3 bits (80), Expect = 0.002 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Query: 157 AVGVGAAATASAASALGRGAAASGTNTSAFGNGARASGDSASALGRGAVASEANSVALGA 216 A+G+ A G A+A G ++ A G A A+ +A A+G G++A+ NSVA+G Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGP 105 Query: 217 NSTADRANAVSVGTTSAQRQIINVADGTAGTDAVNLNQLNAAIAASDQYFMVNSTSANLA 276 S A +AV+ G S ++ DG A + + A+ + + NS + + Sbjct: 106 LSKALGDSAVTYGAASTAQK-----DGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHS 160 Query: 277 NATGAN---AVAIGQAVTSSGSSSVAIGSGTSADGLHSMALG 315 + AN ++AIG + +SV+IG + L +A G Sbjct: 161 SHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202 Score = 32.2 bits (72), Expect = 0.019 Identities = 25/60 (41%), Positives = 36/60 (60%) Query: 1438 GQGSNASGSNSSAIGQGAVASGDSSTAIGQGSSATGSGSVAIGAGSVATEANTVSFGDGT 1497 G ++A G +S AIG A A+ ++ A+G GS ATG SVAIG S A + V++G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 46.0 bits (109), Expect = 4e-08 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Query: 7 IRIVIADDHPAVVIGARYELSATNTLAVVASANNSTELMETLANHPCDVLVSDYAMPGTE 66 I++ADD A I + + V +N+ L +A D++V+D MP Sbjct: 4 ATILVADDDAA--IRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPD-- 59 Query: 67 YGDGLAMFSAILKRYPNLRIVVMT 90 + + I K P+L ++VM+ Sbjct: 60 -ENAFDLLPRIKKARPDLPVLVMS 82
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 37.5 bits (87), Expect = 3e-05 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 6 IRVVLADDHPATLGGVQHGLSSVP-TIRLTGSAGNSTELIALLDAGVCDVLVSDYAMPGG 64 +++ADD A + LS +R+T +A L + AG D++V+D MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNA---ATLWRWIAAGDGDLVVTDVVMPD- 59 Query: 65 AYGDGIALFSYLQRNYPAVKLVVLTMLDNPAVIKGLLGLGISCIVSKSDAVDHLIPAVHA 124 + L +++ P + ++V++ + G + K + LI + Sbjct: 60 --ENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117 Query: 125 A 125 A Sbjct: 118 A 118
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 106 bits (266), Expect = 2e-29 Identities = 54/149 (36%), Positives = 79/149 (53%), Gaps = 16/149 (10%) Query: 94 FMCGKPQPVVQPAPAPAPQPAPQPVPQRQVLLQGDANFATDSAALTSQARNDLDRFIA-- 151 F G+ PVV PAPAPAP V + L+ D F + A L + + LD+ + Sbjct: 191 FGQGEAAPVVAPAPAPAP-----EVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQL 245 Query: 152 ANRGVEFARVAITGFTDSTGSAAHNRTLSEARARTVVNYLRSNGLQARSFSAEGLGAADP 211 +N + V + G+TD GS A+N+ LSE RA++VV+YL S G+ A SA G+G ++P Sbjct: 246 SNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNP 305 Query: 212 VASNATADGR---------AQNRRVEIRL 231 V N + + A +RRVEI + Sbjct: 306 VTGNTCDNVKQRAALIDCLAPDRRVEIEV 334
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 81.9 bits (201), Expect = 1e-17 Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 7/197 (3%) Query: 1205 GAQSIATGSGAVALGAGASAAGTGAVALGHG-VATGTNALALGNGTVASGNNAIAEGFNA 1263 G + A G ++A+GA A AA AVA+G G +ATG N++A+G + A G++A+ G A Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG-AA 120 Query: 1264 RAAGVNGLALGNTARANAADS-LAFGTTAQVDPLATNSIAIGRQANVTSTALNSVALGAS 1322 A +G+A+G ARA+ +D+ +A G ++ D A NS+AIG ++V + S+A+G Sbjct: 121 STAQKDGVAIG--ARASTSDTGVAVGFNSKAD--AKNSVAIGHSSHVAANHGYSIAIGDR 176 Query: 1323 SVADRLNSVSVGSTGQQRQIIYVARGTANTDAVNVSQLKEAVAAFGGNASVDANGAIVNP 1382 S DR NSVS+G RQ+ ++A GT +TDAVNV+QLK+ + N + + + N Sbjct: 177 SKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANA 236 Query: 1383 TYTIGGTTYRNVGDALN 1399 + +G A N Sbjct: 237 NAYADNKSSSVLGIANN 253 Score = 71.5 bits (174), Expect = 3e-14 Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 28/182 (15%) Query: 635 ATAVGANASATGRSAVALGGNTVASAQNAVALGTLSRATGLESTAVGVGAAAT------G 688 + A+GA A A +AVA+G ++A+ N+VA+G LS+A G + G + A G Sbjct: 72 SIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIG 131 Query: 689 ANTSAFGRGASAG----------------------AGNSVALGTFSVADRANSVSVGSAS 726 A S G + G G S+A+G S DR NSVS+G S Sbjct: 132 ARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHES 191 Query: 727 ARRQITNVAAGTQDNDAVNVAQLNEAIANVDGNSPYFKANGAGDGSDAASATGVGSVAVG 786 RQ+T++AAGT+D DAVNVAQL + I N+ A + + A + + Sbjct: 192 LNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIA 251 Query: 787 SN 788 +N Sbjct: 252 NN 253 Score = 68.8 bits (167), Expect = 2e-13 Identities = 88/309 (28%), Positives = 129/309 (41%), Gaps = 66/309 (21%) Query: 347 FSTGTYAANAAATVGNNSATAIGPNASATGISAVALGGNTVASAQNAVALGTLARATGLE 406 FS+ A+ + N +A I PNA ALG A G A A G+ Sbjct: 18 FSSPYAFADDYDGIPNLTAVQISPNADP------ALGLEYPVRPPVPGAGGLNASAKGIH 71 Query: 407 TTAVGVGAAATGASATALGRGAAATGTNSTALGTFASAIGTGNLAVGGGAAVAQTGRFVP 466 + A+G A A +A A+G G+ ATG NS A+G + A+G + G + + G Sbjct: 72 SIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDG---- 127 Query: 467 TNMIAIGTGARAIDGDVTGANGSIAIGSSATAAGTGSIAIGTNARHSGSSATVLGGEASA 526 +AIG+ A+ + TG Sbjct: 128 -----------------------VAIGARASTSDTG------------------------ 140 Query: 527 MGGGGGVAVGYGAMASGSSGVSLGTNSTASATS--SVALGTNSVANRANAVSVGSAAQQR 584 VAVG+ + A + V++G +S +A S+A+G S +R N+VS+G + R Sbjct: 141 ------VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNR 194 Query: 585 QITNVAAGTAGTDAVNVNQLNAAIAATDNKYVSISTGLYAADVAATAAESATAVG-ANAS 643 Q+T++AAGT TDAVNV QL I T S L A A +S++ +G AN Sbjct: 195 QLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNY 254 Query: 644 ATGRSAVAL 652 +SA L Sbjct: 255 TDSKSAETL 263 Score = 63.4 bits (153), Expect = 8e-12 Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 30/207 (14%) Query: 763 FKANGAGDGSDAASATGVGSVAVGSNAKALVAGGVAIGGSATASMANSIAIGNDVIAAQD 822 + G G ASA G+ S+A+G+ A+A VA+G + A+ NS Sbjct: 53 VRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNS------------ 100 Query: 823 GVAIGHGARAQNSNAISIGTQSAAGPNGVSLGNNALSVSDGIALGTNASAAGANSVALGS 882 VAIG ++A +A++ G S A +GV++G A + G+A+G N+ A NSVA+G Sbjct: 101 -VAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGH 159 Query: 883 GSIAAS-----------------NTVSVGSVGNERKITNVAAGTDRQDAVNLGQLQDTGL 925 S A+ N+VS+G R++T++AAGT DAVN+ QL+ Sbjct: 160 SSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIE 219 Query: 926 VAPVDPTNPGAGLTSLAVTYGTNADGS 952 + A L + A Y N S Sbjct: 220 KTQENTNKRSAELLANANAYADNKSSS 246 Score = 37.6 bits (86), Expect = 8e-04 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 23/183 (12%) Query: 3118 GLELRPGTPGDGNGGGTGTNPYFGATDLTAGGSSAANPGTGTGNVAAG-SGASIG----- 3171 +RP PG G + + A TA + A G G++A G + +IG Sbjct: 50 EYPVRPPVPGAGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKA 109 Query: 3172 ------------TGVNNGTVIGSGSTVGSSGGTAIGAGSAANGENATAIGQGSN--ATGS 3217 T +G IG+ ++ S G A+G S A+ +N+ AIG S+ A Sbjct: 110 LGDSAVTYGAASTAQKDGVAIGARAST-SDTGVAVGFNSKADAKNSVAIGHSSHVAANHG 168 Query: 3218 GSVAIGSGSVANEANTVSFGNGTDTGNRRIVNIADGVGANDAATKGQLDRAVGGLGSQIN 3277 S+AIG S + N+VS G+ ++ NR++ ++A G DA QL + + N Sbjct: 169 YSIAIGDRSKTDRENSVSIGH--ESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTN 226 Query: 3278 DLS 3280 S Sbjct: 227 KRS 229 Score = 34.5 bits (78), Expect = 0.009 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 2/142 (1%) Query: 2913 QVKNVAAGTDDTDAVNVAQLKSAGLVAPVDPTNPGSGLTSLAVTYSTNDDESANFDEVKL 2972 Q+ ++AAGT DTDAVNVAQLK + + L + A Y+ N S Sbjct: 195 QLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNY 254 Query: 2973 KGTNGTTITNVAAGAVNSTSTDAINGSQLHGTAQSVADTIGGGTTVGADGTLGNTAIEVN 3032 + A + S D +N ++ H + SVA T A+ T Sbjct: 255 TDSKSAETLENARKEAFAQSKDVLNMAKAH--SNSVARTTLETAEEHANSVARTTLETAE 312 Query: 3033 GQKYSTVAEAVQAAAAYGATDS 3054 AEA+ +A Y + S Sbjct: 313 EHANKKSAEALASANVYADSKS 334 Score = 32.9 bits (74), Expect = 0.023 Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 21/207 (10%) Query: 1297 ATNSIAIGRQANVTSTALNSVALGASSVADRLNSVSVGSTGQ---QRQIIYVARGTANTD 1353 +SIAIG A A +VA+GA S+A +NSV++G + + Y A TA D Sbjct: 69 GIHSIAIGATAEAAKGA--AVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKD 126 Query: 1354 AVNVSQLKEAVAAFGGNASVDANGAIVNPTYTIGGTTYRNVGDALNALSNLGGGGTDPLA 1413 V A G AS G V +G + + +N G + Sbjct: 127 GV----------AIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHG------YS 170 Query: 1414 VTYGTNEDGTPNFAVVTLKGTDGTTLSNVKAGVADTDAVNVSQLKDSGLIGDDGKAIAAV 1473 + G +V + L+++ AG DTDAVNV+QLK + + Sbjct: 171 IAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSA 230 Query: 1474 TYDRNADGTPNLGSVTLAGGTDGTTLS 1500 NA+ + S ++ G + T S Sbjct: 231 ELLANANAYADNKSSSVLGIANNYTDS 257
>SSPAMPROTEIN#Salmonella surface presentation of antigen gene type M signature. Length = 147 Score = 32.0 bits (72), Expect = 0.003 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 16/87 (18%) Query: 270 RYVEQNVERRSAEAA-----HSLAFLRDQLPTVKRQLEEAEQRYATLRSSGHSIDLAEEG 324 RY +++ + E A L L D L RQL E+ YA LR Sbjct: 27 RYQDEDRRLQVEEEAIVEQIAGLKLLLDTLRAENRQLSR-EEIYALLRKQ---------- 75 Query: 325 KLALQQGADLQTRVLELQQKRDELSRR 351 + +Q DL+ +++++Q+KR EL ++ Sbjct: 76 SIVRRQIKDLELQIIQIQEKRSELEKK 102
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 73.3 bits (180), Expect = 9e-17 Identities = 84/339 (24%), Positives = 126/339 (37%), Gaps = 41/339 (12%) Query: 24 VVHAQSSVSLYGLIDAFVGETHAPGAAGSAWQVGSGGMTT-----SYWGVSGSEDLGHGM 78 V A + V+LYG I A V ET A A T S G G EDLG+G+ Sbjct: 14 PVAAMADVTLYGTIKAGV-ETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGL 72 Query: 79 KAVFTLESFFRVNAGQLGSFNGQSFFGRNAFVGLSGRFGEVTVGRNTAPLFVSTLLFNPF 138 KA++ +E + G N R +F+GL G FG++ VGR + L T NP+ Sbjct: 73 KAIWQVEQKASIAGTDSGWGN------RQSFIGLKGGFGKLRVGRLNSVLK-DTGDINPW 125 Query: 139 GNSFAFSPMISHGYLGSAMGAASVQSDTAIDSSVLYQTPEIGGLSGSLLYSNAGVAGHTG 198 + +G + A SV Y +PE GLSGS+ Y+ AG Sbjct: 126 DSKS------------DYLGVNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRHN 173 Query: 199 QANYSANVLY-FAG-AFSATAAVQSLHTASLFLNGATAQTAWLVGGAY---RIHA----- 248 +Y A Y G A + H +N Q + Y ++A Sbjct: 174 SESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQ-IHRLVSGYDNDALYASVAVQ 232 Query: 249 TKLMFQYERVSDNSNVTDDTVQVGASARFGMGSMLLSWAGTRRRPVTGSGI--RWSTFAL 306 + E + S+ + V + RFG + +S+A + + + + Sbjct: 233 QQDAKLVEE--NYSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDATNYNNDYDQVVV 290 Query: 307 GYDYPLSKRTDIYAAWRY-DTITHASSGNGIGAGVRMRF 344 G +Y SKRT + + S GV +R Sbjct: 291 GAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRH 329
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.5 bits (63), Expect = 0.028 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 34 GCNGAGKTTLVKAIMGFLPHVSGEVRFGEH-----VINGMRAHEIARLG 77 G G GK+TL+ ++G G I G+ A+E++ + Sbjct: 603 GTGGIGKSTLINTLVGLDFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT 651
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 25.7 bits (56), Expect = 0.032 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 29 LSAELIEGDTNLFDLGVDSMNMTELLLQ 56 + E I +L D G+DS+ + L+ Q Sbjct: 245 ETPEDITDQEDLLDRGLDSVRIMTLVEQ 272
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 109 bits (273), Expect = 7e-32 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 10/180 (5%) Query: 1 MSSIFAGSFDDMPTMMHRRLGMFRYDVFVGRLGWQLPGADATSLTEWDQFDRGRTIHVVS 60 M IF + + L R + F RL W + D E+DQ+D T ++ Sbjct: 1 MLEIFDVNHTLLSETKSGELFTLRKETFKDRLNWAVQCTDGM---EFDQYDNNNTTYLFG 57 Query: 61 IDQAQHICGCARLIPTTQPYLLQTLCAPSAA-LDLPCAPTVWELSRFAARSAANPTM--- 116 I + R I T P ++ P +++P E SRF + + Sbjct: 58 IKD-NTVICSLRFIETKYPNMITGTFFPYFKEINIPE-GNYLESSRFFVDKSRAKDILGN 115 Query: 117 RASTGMQLFPSILAIAASLGATCVIGAMTRAVARLYQRCGLSLQLLSTAETA-GRPAYLI 175 LF S++ + G + ++ + + +R G ++++ + YL+ Sbjct: 116 EYPISSMLFLSMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRVVEQGLSEKEERVYLV 175
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 101 bits (253), Expect = 3e-25 Identities = 80/400 (20%), Positives = 158/400 (39%), Gaps = 17/400 (4%) Query: 30 FMAGMNVHVTNASLPDIRGSLGASFEEGSWITTAYLVAEIVVIPLTGWLVQVFSARRVLL 89 F + +N V N SLPDI +W+ TA+++ + + G L +R+LL Sbjct: 24 FFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLL 83 Query: 90 VGASGFLAFSLACSVAPS-ISTMIIARALQGAFGGVLIPLSFQLIVTELPPSKHPLGMAL 148 G S+ V S S +I+AR +QGA L ++ +P L Sbjct: 84 FGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGL 143 Query: 149 FAIANNVAQAAGPSVGGWLTDMYSWRWIFYLQIPPAIALVAAIGWAIRPLPVQLGMLRRA 208 + + GP++GG + W ++ + + + + + ++ L ++ + Sbjct: 144 IGSIVAMGEGVGPAIGGMIAHYIHWSYLLLI----PMITIITVPFLMKLLKKEVRIKGHF 199 Query: 209 DWFGIATMAVGLSALQIVLEEGGRKDWFASDLIVELSIVAALGLAAFVAIELRRKEPFIN 268 D GI M+VG+ + F + + IV+ L FV + +PF++ Sbjct: 200 DIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 269 LRLLGQYNFGIASLMQFLFGAVVFGVVFLVPNYFAELHGYSARDIG-LAMIPYGLVQFAM 327 L F I L + V G V +VP ++H S +IG + + P + Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 328 SFLTPPLMRRTSPRTTIVLGFVLVAAGCLMNIHLDADAASNVIVPSLIVRGIGQSFVVIA 387 ++ L+ R P + +G ++ L L + S + ++ G SF Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLL-ETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 388 LAVMAVDGIEKAQLGSASGVFNMVRNVGGAIGIAVMSQIV 427 ++ + +++ + G+ + N + GIA++ ++ Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 135 bits (342), Expect = 7e-38 Identities = 65/413 (15%), Positives = 130/413 (31%), Gaps = 68/413 (16%) Query: 14 RFSRRQLIAAGVVLAVIALAVFGWHWWT-VGRFIESTDDAYVRADVVTVSSRVSGYVTQV 72 SRR + A ++ + +A F V + + + V ++ Sbjct: 52 PVSRRPRLVAYFIMGFLVIA-FILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEI 110 Query: 73 AVDDNQPVKRGDVLVRLDDRDYRAKVDDAQAAVAAADAT--------------------- 111 V + + V++GDVL++L A Q+++ A Sbjct: 111 IVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKL 170 Query: 112 ------------------------LQAEQAAAATLDAQIGQQRSQIAQADADAAAARAEA 147 Q + + ++R++ A + Sbjct: 171 PDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLS 230 Query: 148 ARRDADATRYKQLLAESAASGQRWEQAHADALKARAELTRAGAAV--------RVQTDQQ 199 + + LL + A + + ++A EL + + + + Q Sbjct: 231 RVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQ 290 Query: 200 TVLQRRREQSTAAIAQARARLAAAQAKLALAQLDLDHTVIRATRDGSVGQRAVRA-GQYV 258 V Q + + + Q + +LA + +VIRA V Q V G V Sbjct: 291 LVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVV 350 Query: 259 EVGMPLLAVVPLSDVYVV-ANFKETQLGAMHDGQPVQIDVDTYSGHTLHGRVIGLAPGSG 317 L+ +VP D V A + +G ++ GQ I V+ + +T +G ++G Sbjct: 351 TTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFP-YTRYGYLVG------ 403 Query: 318 AQFALLPPDNATGNFTKIVQRIPVKIRVDAPPA---GVVLRPGMSVIARVDTR 367 + + D +V + + I + + L GM+V A + T Sbjct: 404 -KVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTG 455
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 33.1 bits (75), Expect = 0.006 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 674 IDRAALARLPVSRAGSDTRDAPRGALEMRLAEMWATLLELAPDEIGRDASFFELGGHSLL 733 +D+ A V + ++T E + + A LL+ P++I + G S+ Sbjct: 207 LDQLQNAPADVQKTSANTGKKNVFTCE-NIRKQIAELLQETPEDITDQEDLLDRGLDSV- 264 Query: 734 VSRLMLAVK--RELGGNAALARFMERPTIAALAALLTDES 771 R+M V+ R G ERPTI LLT S Sbjct: 265 --RIMTLVEQWRREGAEVTFVELAERPTIEEWQKLLTTRS 302
>PF07472#Fucose-binding lectin II Length = 245 Score = 148 bits (375), Expect = 5e-48 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 10/128 (7%) Query: 4 SQTSSNRAGEFSIPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAA-YHKLTTRDGPREA- 61 + R G F++PPN F N++ QQ I++++ D+ +PAA + T+D Sbjct: 126 TTGGGERDGIFNLPPNIAFGVTALVNSSAQQTIEVYVDDNPKPAATFQGAGTQDANLNTQ 185 Query: 62 TLNSGNGKIRFEVSVNGKPSATDARLAPINGKKSDGSPFTVNFGIVVSEDGHDSDYNDGI 121 +NSG GK+R V+ NGKPS +R I K FG+V SEDG D DYNDGI Sbjct: 186 IVNSGKGKVRVVVTANGKPSKIGSRQVDIFKK--------TYFGLVGSEDGTDGDYNDGI 237 Query: 122 VVLQWPIG 129 +L WP+G Sbjct: 238 AILNWPLG 245
>PF07472#Fucose-binding lectin II Length = 245 Score = 203 bits (518), Expect = 2e-67 Identities = 89/159 (55%), Positives = 114/159 (71%), Gaps = 16/159 (10%) Query: 113 GSAMHIDSYASLSAIGETAAPSSSQGGGNQGAETGGAGAGNIGGERDGTFNLPPHIKFGV 172 G ++ ++ + E P ++ GGG ERDG FNLPP+I FGV Sbjct: 103 GVGAVVNYFSKATPQPEPTQPGTTTGGG----------------ERDGIFNLPPNIAFGV 146 Query: 173 TALTNAANDQTIDIYIDDDPKPAATFKGAGAQDQNLGTKVLDSGNGRVRVIVMANGKPSR 232 TAL N++ QTI++Y+DD+PKPAATF+GAG QD NL T++++SG G+VRV+V ANGKPS+ Sbjct: 147 TALVNSSAQQTIEVYVDDNPKPAATFQGAGTQDANLNTQIVNSGKGKVRVVVTANGKPSK 206 Query: 233 LGSRQVDIFKKSYFGIVGSEDGADDDYNDGIVFLNWPLG 271 +GSRQVDIFKK+YFG+VGSEDG D DYNDGI LNWPLG Sbjct: 207 IGSRQVDIFKKTYFGLVGSEDGTDGDYNDGIAILNWPLG 245
>PF07472#Fucose-binding lectin II Length = 245 Score = 407 bits (1046), Expect = e-148 Identities = 230/245 (93%), Positives = 235/245 (95%), Gaps = 1/245 (0%) Query: 1 MSQPFTHDDLYALLQLAGNDATAVQANGDQAVLDRMRRFMTAQLVEKLPQYDVFVDIATI 60 MSQPFTHDDLYALLQLAGNDATAVQANGDQAVLDRMR+FMT QLVEKLPQYDVFVDIATI Sbjct: 1 MSQPFTHDDLYALLQLAGNDATAVQANGDQAVLDRMRQFMTTQLVEKLPQYDVFVDIATI 60 Query: 61 PYSFDVGSWQNKVKADAAGEVVACTVTWAGAPGVLPGAAAKFGVGAVVNYFSKATPQPVP 120 PYSFDVGSWQNKVKADAAG+V+ACTVTWAGAPGVLPGAAAKFGVGAVVNYFSKATPQP P Sbjct: 61 PYSFDVGSWQNKVKADAAGQVIACTVTWAGAPGVLPGAAAKFGVGAVVNYFSKATPQPEP 120 Query: 121 -PAPAPTGGGERDGVFNLPPNIAFGVTALVNSSAPQTIEVFVDDNPKPAATFQGAGTQDA 179 TGGGERDG+FNLPPNIAFGVTALVNSSA QTIEV+VDDNPKPAATFQGAGTQDA Sbjct: 121 TQPGTTTGGGERDGIFNLPPNIAFGVTALVNSSAQQTIEVYVDDNPKPAATFQGAGTQDA 180 Query: 180 NLNTQIVNSGKGKVRVVVTANGKPSKIGSRQVDIFKKTYFGLVGSEDGGDGDYNDGIAIL 239 NLNTQIVNSGKGKVRVVVTANGKPSKIGSRQVDIFKKTYFGLVGSEDG DGDYNDGIAIL Sbjct: 181 NLNTQIVNSGKGKVRVVVTANGKPSKIGSRQVDIFKKTYFGLVGSEDGTDGDYNDGIAIL 240 Query: 240 NWPLG 244 NWPLG Sbjct: 241 NWPLG 245
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 76.2 bits (187), Expect = 2e-19 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 8/175 (4%) Query: 1 MARTRNENLHQQRREQILTAAARVFKAKGFHGARTEDICAAADMSAGAVFRYFADKREMI 60 MAR + Q+ R+ IL A R+F +G +I AA ++ GA++ +F DK ++ Sbjct: 1 MARKTKQEA-QETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLF 59 Query: 61 DAIIAVEVERYTQDFDRILSKDGLRWLANITADE---LTGMLAQGDDGLGVDSWLELARD 117 I + + +K L+ + L + + L ++ Sbjct: 60 SEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEF 119 Query: 118 AERRPDIVGLDR----KMRADLAGLLASGQAEGWIRPSLDPTGTTNIVFAMFNGL 168 + R + + L + L I+ +GL Sbjct: 120 VGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 66.2 bits (161), Expect = 3e-15 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 33 EPRGARRKRETRARLLDAAFVLMAQKGMEGVAINEITEAADVGFGSFYNHFESKEAIHAA 92 + + +ETR +LD A L +Q+G+ ++ EI +AA V G+ Y HF+ K + + Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 93 VLEIVFEEFADTLDRIAGSLT-DPAEIISVSLRHTLLRARSEPVWGQFL 140 + E+ + DP ++ L H L +E + Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLM 110
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.8 bits (93), Expect = 1e-05 Identities = 73/385 (18%), Positives = 125/385 (32%), Gaps = 32/385 (8%) Query: 30 VAPIIKRELGIDD---AQMGILFSSFFIGYCVFCFIGGWAADRFGPRRVFACAAGVWSLF 86 V P + R+L + A GIL + + + + G +DRFG R V + ++ Sbjct: 27 VLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVD 86 Query: 87 CGATALAGSFAHLLVVRVAFGIGEGPMGTTTNKAISNWFPRREAGRAVGWTNAGQPLGAA 146 A A L + R+ GI I++ E R G+ +A G Sbjct: 87 YAIMATAPFLWVLYIGRIVAGITGATGAVAGA-YIADITDGDERARHFGFMSACFGFGM- 144 Query: 147 IAAPIVGLVALQFGWRVSFIVIAALGFVWLAAWWTLFRDDPASHPRVSPDEAREIASDRM 206 +A P++G + F F AAL L F + P + Sbjct: 145 VAGPVLGGLMGGFSPHAPFFAAAALNG--LNFLTGCFLLPESHKGERRPLRREAL----- 197 Query: 207 IDVSPDVHAIDRAARPLLRDLLSRPVLGVALAFFSFNYVLYFFLSWLPSYLTDYQHLDIK 266 V + FF V + + D H D Sbjct: 198 -----------NPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT 246 Query: 267 QMSVVGILPWLGATVGFVAGGTVSDRIYRRTGDVLFARKIVIVVGLAVAAVCVLLASRVS 326 +GI + +A ++ + R G+ R+ +++ +A +LLA Sbjct: 247 ---TIGISLAAFGILHSLAQAMITGPVAARLGE----RRALMLGMIADGTGYILLAFATR 299 Query: 327 SLGAAVTLIAIASLFAFMAPQACWSLLQEIVPRERVGSAGGFVHLLANLAGILSPSLTGW 386 A ++ +AS P A ++L V ER G G + L +L I+ P L Sbjct: 300 GWMAFPIMVLLAS-GGIGMP-ALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTA 357 Query: 387 LVEYGGGYASAFVLAGASALAGAVI 411 + + + +AL + Sbjct: 358 IYAASITTWNGWAWIAGAALYLLCL 382
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 104 bits (261), Expect = 4e-29 Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 8/251 (3%) Query: 6 GKKLLVVGGTSGIGLATAKQVLKSGGSVVLTGNRKDKAEAVRAELSGLGPVS-VIAANLM 64 GK + G GIG A A+ + G + +K E V + L + A++ Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 65 TEEGMNAIRAEINANHKDISLLVNSAGIFVPKAFIDHEESDYDMYLSLNRATFFITQDVV 124 ++ I A I I +LVN AG+ P + +++ S+N F V Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 125 RNMLAAKRQGAIVNVGSIGAQAALGDSAASAYSMAKAGLHALTRNLAIELADAGIRVNAV 184 + +R G+IV VGS A ++ +AY+ +KA T+ L +ELA+ IR N V Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVP--RTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 185 SPAIVQTSIYEGFMAKED-----IAGAMKALDSFHPLGRVGTPEDVANTIVFLLSDKTSW 239 SP +T + A E+ I G+++ + PL ++ P D+A+ ++FL+S + Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245 Query: 240 VTGAIWNVDAG 250 +T VD G Sbjct: 246 ITMHNLCVDGG 256
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 65.4 bits (159), Expect = 1e-15 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 6/173 (3%) Query: 2 AVGTRDALVQAGEGLMRSMGYAAFSYADLAETVGIRKASIHHHFPTKEDLGVAIVEAYVA 61 A TR ++ L G ++ S ++A+ G+ + +I+ HF K DL I E + Sbjct: 9 AQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSES 68 Query: 62 RVVEAF-ERIDRENEDFWGRL-NGFFDTFRASSDGSLLPL---CGALAAEMAALPPELQK 116 + E E + D L ++ L E +Q+ Sbjct: 69 NIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQ 128 Query: 117 LTHRFFELQLCWLTKVIDKGIGDGEIPAGVGSYQKAHQVLSVLEGASFVEWAM 169 + + + I +PA + + + A + + G W Sbjct: 129 AQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL-MENWLF 180
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 136 bits (344), Expect = 1e-37 Identities = 89/440 (20%), Positives = 132/440 (30%), Gaps = 138/440 (31%) Query: 63 PSLVQYQWHLQNTGQSAFAKAAGTPGFDLDVASLFAQGETGTGVRVLVLDDGLDIHHPDL 122 P V Q N G ++ A G GV+V VLD G D HPDL Sbjct: 9 PYQVIKQEQQVNEIP---------RGVEMIQAPAVWNQTRGRGVKVAVLDTGCDADHPDL 59 Query: 123 KDRIDSSMLYNFEANANSGDPTPLNNDAHGTTIGGIIGAT--GIGVRGVAPRVTLGGARY 180 K RI NF + + + HGT + G I AT GV GVAP L + Sbjct: 60 KARIIGG--RNFTDDDEGDPEIFKDYNGHGTHVAGTIAATENENGVVGVAPEADLLIIKV 117 Query: 181 L-CKACDTTKNKLDAFGAASFSANADIINASFGIDSTTRVEQFNPDDSTNQNVLAARLLE 239 L + + A DII+ S G P+D + + + Sbjct: 118 LNKQGSGQYDWIIQGIYYA-IEQKVDIISMSLG----------GPEDVPELHEAVKKAVA 166 Query: 240 KGRQGKGVVLVKAAGNDYIGIEGSTEGQCTAGVSCGNANYDPQ-NTMPQTIVVAAVNALG 298 ++++ AAGN+ G + + I V A+N Sbjct: 167 -----SQILVMCAAGNE--------------GDGDDRTDELGYPGCYNEVISVGAINFDR 207 Query: 299 KKSSYSSASSAVLVSGFGGEWGNQRAADWNGVFDPGPAILTTDLAGCGRGDVRAGNADAP 358 S +S++++ V + PG IL+T G Sbjct: 208 HASEFSNSNNEVDLVA------------------PGEDILSTVPGGK------------- 236 Query: 359 LPSNLDGYNPFDDPGSSVARSLNPSCNYTAKMNGTSAATPTVAGVVALMLHANPNLTWRD 418 A +GTS ATP VAG +AL+ RD Sbjct: 237 ----------------------------YATFSGTSMATPHVAGALALIKQLANASFERD 268 Query: 419 -----VRAILMKTARRIDSTRQASVMPLPDGESYTPEPTWTQNHAGFWFDNWYGFGLVDA 473 + A L+K + ++ G GL+ Sbjct: 269 LTEPELYAQLIKRTIPLGNS-----------------------------PKMEGNGLLYL 299 Query: 474 AAAVSMARNYTTYLTGPMKS 493 A ++R + T + S Sbjct: 300 TAVEELSRIFDTQRVAGILS 319
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.9 bits (168), Expect = 1e-16 Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 27/183 (14%) Query: 14 RDRLLDAAEALIYSGGIHATGVDAIVKRSGAARKSFYSHFESKEALVVAALERRDERWMR 73 R +LD A L G+ +T + I K +G R + Y HF+ K L E + Sbjct: 13 RQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGE 72 Query: 74 WFVDGTLARGKAPRAQLLGMFDVLRDWFGQPDFHGCAFLNASGEIPDADDPVRVVARMHK 133 ++ P + L + + + + + Sbjct: 73 LELEYQAKFPGDPLSVLREILIHVLESTVTEE---------------------------R 105 Query: 134 ARLLAFVRERFDAYADETGIERRGLARLARQWLVLIDGAIGVALVSGDANAARDARATAE 193 RLL + + E + ++ L + I+ + + + A R A Sbjct: 106 RRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAI 165 Query: 194 LLL 196 ++ Sbjct: 166 IMR 168
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 42.1 bits (99), Expect = 2e-06 Identities = 20/162 (12%), Positives = 50/162 (30%), Gaps = 14/162 (8%) Query: 92 AGALLGALYEEALKAARDSLDADREQVRANMADAEQRLRDATIRQETLEGALARGEARNE 151 + EE + + + E L + T+ + R E + Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSR 231 Query: 152 QLQARVTELEVQLASQTTHGSASEATLLT---TVARLEKELAAAAGRIDAEQAQNAALRD 208 ++R+ + L + + ++ +L EL ++ + Sbjct: 232 VEKSRLDDFS-SLLHK---QAIAKHAVLEQENKYVEAVNELRVYKSQL-------EQIES 280 Query: 209 RIDALQAELQQRTEHYAQQIKDAVAEAERRVKPMLVELDSLR 250 I + + E Q T+ + +I D + + + + +EL Sbjct: 281 EILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNE 322
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 67.6 bits (164), Expect = 5e-13 Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 11/158 (6%) Query: 309 GKDAYATG-NNIAVGMGAKADTGGA---GTGVIAIGEGAAAGRPGYS--GAIAIGYGARA 362 G +A A G ++IA+G A+A G A G G IA G + A P G A+ YGA + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 363 VDGTQGGYLRPVAIGAGAQAQGVSVAIGPDAQSSPGNGVALGHQASVGADATWAVALGTG 422 G VAIGA A VA+G ++++ N VA+GH + V A+ +++A+G Sbjct: 122 TAQKDG-----VAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDR 176 Query: 423 SSADRADTVSVGNAVSQRQIVNVAAGTQGTDAVNVAQL 460 S DR ++VS+G+ RQ+ ++AAGT+ TDAVNVAQL Sbjct: 177 SKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 63.8 bits (154), Expect = 8e-12 Identities = 58/178 (32%), Positives = 97/178 (54%), Gaps = 9/178 (5%) Query: 1088 AIGVGTIASGANTVAIGVRSYANSDGAVAIGNMAQTGASQPNSVAIGSNVTTNGASALAV 1147 A+G+ A G+ + A ++AIG A+ A++ +VA+G+ G +++A+ Sbjct: 46 ALGLEYPVRPPVPGAGGLNASAKGIHSIAIGATAE--AAKGAAVAVGAGSIATGVNSVAI 103 Query: 1148 GSQAKANGDNAIALGNNNVMAVGEGSIAIGNKAVSAAGTTNGIALGAGANVARSVADSMA 1207 G +KA GD+A+ G + + +AIG +A +T+ + G N +S+A Sbjct: 104 GPLSKALGDSAVTYGAASTAQ--KDGVAIGARA-----STSDTGVAVGFNSKADAKNSVA 156 Query: 1208 LGAKSSVEKGANGAVALGTGSKATRANTVSVGNTGTERQIVNVAAGTQGTDAVNVAQL 1265 +G S V ++A+G SK R N+VS+G+ RQ+ ++AAGT+ TDAVNVAQL Sbjct: 157 IGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 61.1 bits (147), Expect = 5e-11 Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 9/162 (5%) Query: 2044 GLNTGALSNESVAIGNMAQTGSDQPFSVAIGSWATTNGAHALAIGSHAKANGENAVAVGS 2103 GLN A S+AIG A+ + +VA+G+ + G +++AIG +KA G++AV G+ Sbjct: 62 GLNASAKGIHSIAIGATAEAA--KGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 2104 NGIKAIGASSIAIGNAAEASVGATNGIALGTGASVEPNVTDAMALGANTIVDDKANGAVA 2163 +AIG A S G+A+G + + +++A+G ++ V ++A Sbjct: 120 ASTAQ--KDGVAIGARASTS---DTGVAVGFNSKAD--AKNSVAIGHSSHVAANHGYSIA 172 Query: 2164 LGAGSKATRANTISVGSAGSERQIVNIAAGTQSTDAVNVAQL 2205 +G SK R N++S+G RQ+ ++AAGT+ TDAVNVAQL Sbjct: 173 IGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 60.7 bits (146), Expect = 7e-11 Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 9/162 (5%) Query: 2975 GLNTGALSNESVAIGNMAQTGSDQPFSVAIGSWVTTNGAHALAIGSHAKANGENAVAVGS 3034 GLN A S+AIG A+ + +VA+G+ G +++AIG +KA G++AV G+ Sbjct: 62 GLNASAKGIHSIAIGATAEAA--KGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 3035 NGIKAIGASSIAIGNAAEASVGATNGIALGTGASVEPNVTDAMALGANTIVDDKANGAVA 3094 +AIG A S G+A+G + + +++A+G ++ V ++A Sbjct: 120 ASTAQ--KDGVAIGARASTS---DTGVAVGFNSKAD--AKNSVAIGHSSHVAANHGYSIA 172 Query: 3095 LGASSKATRANTISVGSAGSERQIVNIAAGTQSTDAVNVAQL 3136 +G SK R N++S+G RQ+ ++AAGT+ TDAVNVAQL Sbjct: 173 IGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQL 214 Score = 57.6 bits (138), Expect = 6e-10 Identities = 56/149 (37%), Positives = 78/149 (52%), Gaps = 20/149 (13%) Query: 75 AVRSVAIGLNAVAGRFSQVVIGDGASASEDYAVAIGVNANGAGQYGVAVGEDASAHEAAV 134 + S+AIG A A + + V +G G+ A+ +VAIG + G V G ++A + V Sbjct: 69 GIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGV 128 Query: 135 AIGAGAVAQDEGVAIGVRATA-VSGSVAIGHD----------------AKADRVDTVSVG 177 AIGA A D GVA+G + A SVAIGH +K DR ++VS+G Sbjct: 129 AIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIG 188 Query: 178 GGKWGPPQRQIVNVAAGTQDTDVVNVGQL 206 RQ+ ++AAGT+DTD VNV QL Sbjct: 189 HESL---NRQLTHLAAGTKDTDAVNVAQL 214 Score = 48.4 bits (114), Expect = 4e-07 Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 19/168 (11%) Query: 891 AAGVAETDAVNVGQLSDATKSIRDSLSDGSLSMRYIKVKATGQAANPMGTNTVAIGAGAN 950 A A+ AV VG S AT +S++ G LS T AA+ + VAIGA A+ Sbjct: 78 TAEAAKGAAVAVGAGSIATGV--NSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARAS 135 Query: 951 ATGNGSLALGTGSRANGLNSVAIGFNS-VATD---------------ANQVSVGDIGNER 994 + G +A+G S+A+ NSVAIG +S VA + N VS+G R Sbjct: 136 TSDTG-VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNR 194 Query: 995 RISNVADGTEDTDAVNVNQLTEAIEKMSARTDKLSSELKSRHSSLMAN 1042 +++++A GT+DTDAVNV QL + IEK T+K S+EL + ++ N Sbjct: 195 QLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADN 242 Score = 38.7 bits (89), Expect = 4e-04 Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 15/296 (5%) Query: 2754 GSVTLGGAGAAAPVALKNVAAGVDDTDAVNVGQLNTGLSDMKRELAEGNIDLKYIKVRAD 2813 G+ GAA V ++A GV+ +V +G L+ L D + K Sbjct: 76 GATAEAAKGAAVAVGAGSIATGVN---SVAIGPLSKALGDSAVTYGAASTAQKDGVAIGA 132 Query: 2814 GAPATATGAQSVAIGSKALAGGPNSLALGAGARALGNG--SVALGSNSIATEPMTVSVGD 2871 A + TG VA+G + A NS+A+G + N S+A+G S +VS+G Sbjct: 133 RASTSDTG---VAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGH 189 Query: 2872 DGTERKIIHVKAGDVTAKSTDAINGSQLFDALGQLKSHVAAEQSHLLSRVNALADSGEPN 2931 + R++ H+ AG K TDA+N +QL + + + + + LL+ NA AD+ + Sbjct: 190 ESLNRQLTHLAAG---TKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAYADNKSSS 246 Query: 2932 SLVVVEGMGGTNTA-SLSGGDPESTTAAAIGVEAHAAGANAIALGLNTGALSNESVAIGN 2990 L + + +A +L E+ + + A +N++A A + + Sbjct: 247 VLGIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVART 306 Query: 2991 MAQTGSDQPFSVAIGSWVTTNGAHALAIGSHA--KANGENAVAVGSNGIKAIGASS 3044 +T + + + + N +A + SH AN V V ++ KAI S+ Sbjct: 307 TLETAEEHANKKSAEALASAN-VYADSKSSHTLKTANSYTDVTVSNSTKKAIRESN 361 Score = 38.7 bits (89), Expect = 4e-04 Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 14/147 (9%) Query: 3509 AGQTVMAANAGNGSNNVAIGSSSTISDDAGNATAVGANSTVRAAG------------GTA 3556 A V A + G N+VAIG S D+ A GA ST + G G A Sbjct: 85 AAVAVGAGSIATGVNSVAIGPLSKALGDS--AVTYGAASTAQKDGVAIGARASTSDTGVA 142 Query: 3557 IGAGADAHAANSTAIGQGSKARGDNSVAIGAGSVANEDNTVSFGDGSDQGKRRIVNIADG 3616 +G + A A NS AIG S ++ +I G + D S G + R++ ++A G Sbjct: 143 VGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAG 202 Query: 3617 VNASDAATKGQLDRAVGGLQGQINGVS 3643 +DA QL + + Q N S Sbjct: 203 TKDTDAVNVAQLKKEIEKTQENTNKRS 229 Score = 37.6 bits (86), Expect = 0.001 Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 3539 NATAVGANSTVRAAGGTAIGAGADAHAANSTAIGQGSKARGDNSVAIGAGSVANED 3594 ++ A+GA + A+GAG+ A NS AIG SKA GD++V GA S A +D Sbjct: 71 HSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKD 126 Score = 36.0 bits (82), Expect = 0.003 Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 3544 GANSTVRAAGGTAIGAGADAHAANSTAIGQGSKARGDNSVAIGAGSVANEDNTVSFGDGS 3603 G N++ + AIGA A+A + A+G GS A G NSVAIG S A D+ V++G S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 3604 DQGK 3607 K Sbjct: 122 TAQK 125 Score = 35.6 bits (81), Expect = 0.004 Identities = 75/385 (19%), Positives = 136/385 (35%), Gaps = 24/385 (6%) Query: 3327 ASVTLGDAGTAVGLHNVATGAVSATSTDAVNGSQLHGMATSVANAIGGDTTVDENGQVAV 3386 A+V +G A G+++VA G +S D+ A AIG + + G Sbjct: 85 AAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVG 144 Query: 3387 NSIEVGGHKYATVSQAVQAAAAYGATDSLAVRYDVDSHGNPNYGSVTLGGPAAAPVTLTN 3446 + + + + AA +G + ++ R D + + G +L LT+ Sbjct: 145 FNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNR------QLTH 198 Query: 3447 VADGKSQYDAVNYGQLSSLQSDFENRLGSMDDRVSKIETTGGGSGGEARRTVSNDLISGS 3506 +A G DAVN QL ++ A N S Sbjct: 199 LAAGTKDTDAVNVAQLKK----------EIEKTQENTNKRSAELLANANAYADNKSSSVL 248 Query: 3507 GDAGQTVMAANAGNGSNNVAIGSSSTISDDAGNATAVGANSTVRAAGGTAI-GAGADAHA 3565 G A + +A N A + S D N +NS R TA A + A Sbjct: 249 GIANNYTDSKSAETLEN--ARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEHANSVART 306 Query: 3566 ANSTAIGQGSKARGDNSVAIGAGSVANEDNTVSFGDGSDQGKRRIVNIADGVNASDAATK 3625 TA +K + + + + +T+ + V +++ + + Sbjct: 307 TLETAEEHANKKSAEALASANVYADSKSSHTLKTANSYTD-----VTVSNSTKKAIRESN 361 Query: 3626 GQLDRAVGGLQGQINGVSRNAYSGIAAATALTMIPGVDPGKTLSFGIGSASYKGYQAVAF 3685 D L +++ + G+A++ AL + ++F G Y+ QA+A Sbjct: 362 QYTDHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAI 421 Query: 3686 GGEARINKNLKMKAGVGLSSGGNTV 3710 G R+N+N+ +KAGV + + + Sbjct: 422 GSGYRVNENVALKAGVAYAGSSDVM 446 Score = 34.1 bits (77), Expect = 0.012 Identities = 26/59 (44%), Positives = 36/59 (61%) Query: 930 ATGQAANPMGTNTVAIGAGANATGNGSLALGTGSRANGLNSVAIGFNSVATDANQVSVG 988 A G A+ G +++AIGA A A ++A+G GS A G+NSVAIG S A + V+ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYG 118 Score = 33.7 bits (76), Expect = 0.015 Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 4/133 (3%) Query: 1983 AAAASGSGGGGKGPSFVTIDGMGSDGSRFNTASITTGDPESTTAAAIGVDAHAAGAN-AI 2041 AA A G+G G + V I G +++T G + + + A A+ ++ + Sbjct: 85 AAVAVGAGSIATGVNSVAI---GPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGV 141 Query: 2042 ALGLNTGALSNESVAIGNMAQTGSDQPFSVAIGSWATTNGAHALAIGSHAKANGENAVAV 2101 A+G N+ A + SVAIG+ + ++ +S+AIG + T+ ++++IG + +A Sbjct: 142 AVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAA 201 Query: 2102 GSNGIKAIGASSI 2114 G+ A+ + + Sbjct: 202 GTKDTDAVNVAQL 214 Score = 33.7 bits (76), Expect = 0.015 Identities = 27/66 (40%), Positives = 37/66 (56%) Query: 2812 ADGAPATATGAQSVAIGSKALAGGPNSLALGAGARALGNGSVALGSNSIATEPMTVSVGD 2871 A G A+A G S+AIG+ A A ++A+GAG+ A G SVA+G S A V+ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 2872 DGTERK 2877 T +K Sbjct: 120 ASTAQK 125
>BACINVASINB#Salmonella/Shigella invasin protein B signature. Length = 593 Score = 34.7 bits (79), Expect = 4e-04 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%) Query: 3 QLNVTEGVLASSLQVLTTFDLIWIVAALVLGGMAKGITGIGVPL-VAMPIVS-----QFM 56 + N G + L L T ++ +VAA+ GG + + +G+ + VA IV F+ Sbjct: 309 ETNRIMGCIGKVLGALLT--IVSVVAAVFTGGASLALAAVGLAVMVADEIVKAATGVSFI 366 Query: 57 -----PIRDAVLLLSMPIILGNIPQALEGGQVLATARKIAAPIAGTVFGNIAGVAILLSL 111 PI + VL M +I I +ALEG V ++A I G + IA VA+++ + Sbjct: 367 QQALNPIMEHVLKPLMELIGKAITKALEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVV 426 Query: 112 NSGHAQAAS 120 AA+ Sbjct: 427 AVVGKGAAA 435
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 79.9 bits (197), Expect = 2e-17 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 953 SGLQILVVDDHPVNRLVTKAQLERLGYTAVAVSNGMDALRVLDNSDFALILTDCAMPEMD 1012 +G ILV DD R V L R GY SN R + D L++TD MP+ + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 1013 GYELTKRIRSREHRSRDTPIVALTANALPDEAIRCAEAGMDGLLIKPTTLAVLRDQLAH 1071 ++L RI+ D P++ ++A AI+ +E G L KP L L + Sbjct: 62 AFDLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 50.2 bits (120), Expect = 1e-09 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 4 RVVLADDHPIMLLGCRILIEQGGLEVVGEARDSRELMSILARVACDVVITDFSMPNTGRV 63 +++ADD + + + G +V ++ L +A D+V+TD MP+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE--- 60 Query: 64 DGLPMLSMIRREHVALPVIVLTNMANAGLLRAMLNEGVLGIVEKGAERNELFAAVRAAL 122 + +L I++ LPV+V++ +G + K + EL + AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>PF04647#Accessory gene regulator B Length = 212 Score = 29.4 bits (66), Expect = 0.042 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 20/119 (16%) Query: 12 FAAPLALFTILAMVILPLPPAALDVMFTFNIVLSIVVVMV---AVTVKRP---------L 59 L +F +LA + + PA ++ + S++ ++ + L Sbjct: 81 TLTSLLVFNVLAYIAHLIDPAYFQLLILIAFITSLLALLFLVPVDNPRNLISNTEQRKTL 140 Query: 60 DFSAF-PTVILAATLMRLTLNVASTRVVLLNGYTGASAAGQVIESFANVVIGSNFVVGL 117 ++L + A G + ++F +G F+VG Sbjct: 141 KLKTSMVLMVLFGGSIGAYRLYTHQ-------IALAILLGVLWQTFTLTALGHKFIVGW 192
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 292 bits (749), Expect = 5e-99 Identities = 97/349 (27%), Positives = 178/349 (51%), Gaps = 7/349 (2%) Query: 6 TGDKTEKATPQKLRKARMEGQVARSRDIGTCVGILVALKLIVVLTPAWLVELKHIFALSF 65 +G+KTE+ TP+K+R AR +GQVA+S+++ + I+ +++ L+ + + + Sbjct: 2 SGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPA 61 Query: 66 ADLSGDDRLGNAVSMLFPAAVLLMCKMLAPL---AAVPAGIIVASLIPGGWIISHKNIMP 122 A+S + +L + PL AA+ A I + ++ G++IS + I P Sbjct: 62 E--QSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMA--IASHVVQYGFLISGEAIKP 117 Query: 123 KLNRLNPLSGLKRLVSGKHYMQFGTTVLKALVLMATLFIVCRSNLSGFIRLQGAPLADAL 182 + ++NP+ G KR+ S K ++F ++LK ++L ++I+ + NL ++L + Sbjct: 118 DIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECIT 177 Query: 183 TGGANLFLSSAVTLSCIITVFALVDIPVQQIIFKRGQRMSKRDIKEEMKQSEGRPEVKSR 242 + V + V ++ D + + + +MSK +IK E K+ EG PE+KS+ Sbjct: 178 PLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSK 237 Query: 243 IRQIQRQLARQGIRKTVPTADLVVMNPTHYAVALKYDVTRAQAPYVVAKGVDEVALFIRD 302 RQ +++ + +R+ V + +VV NPTH A+ + Y P V K D +R Sbjct: 238 RRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRK 297 Query: 303 VARGHNVEVLELPPLARAIYHTSQVNQQIPAELYRAVAQVLSYVLQIKA 351 +A V +L+ PLARA+Y + V+ IPAE A A+VL ++ + Sbjct: 298 IAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNI 346
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 118 bits (298), Expect = 2e-34 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 1/248 (0%) Query: 7 QLLPLANTIFWPFCRIAAALAASPILGDVMVPVRLRLLIALFLALAIQPGIPTMPVIDLL 66 Q L N FWP R+ A ++ +PIL + VP R++L +A+ + AI P +P V + Sbjct: 8 QWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVP-VF 66 Query: 67 QLEGVAAMAEQVLIGGLLGFVFHLVLCALQIFGTIASSQLGLSMAQINDPMNGQMADVLT 126 + +Q+LIG LGF A++ G I Q+GLS A DP + VL Sbjct: 67 SFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLA 126 Query: 127 SVMYVVFILLFFAVDGHLILTSVIARSFAVWPVGRFAFDLDALKHLAFAVGWIFSAAVAL 186 +M ++ +LLF +GHL L S++ +F P+G + +A L A IF + L Sbjct: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186 Query: 187 ALPVMFATLVVQVGLGLLNRVAPALNIFALGFSITTMFGLLLLTLLLPSLPDHYGRMVEH 246 ALP++ L + + LGLLNR+AP L+IF +GF +T G+ L+ L+P + + Sbjct: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246 Query: 247 VLELYDRL 254 + L + Sbjct: 247 IFNLLADI 254
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 52.8 bits (127), Expect = 5e-13 Identities = 23/79 (29%), Positives = 36/79 (45%) Query: 9 GFAVDALRLVLVIILVLITPGLITGVLVAIFQAATQINEQTMSFLPRLITTLVALALAGP 68 AL LVL++ I G+LV +FQ TQ+ EQT+ F +L+ + L L Sbjct: 6 FAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFLLSG 65 Query: 69 WMTGRVMHYTVEIFSRAAQ 87 W ++ Y ++ A Sbjct: 66 WYGEVLLSYGRQVIFLALA 84
>FLGBIOSNFLIP#Escherichia coli: Flagellar biosynthetic protein FliP signature. Length = 245 Score = 205 bits (523), Expect = 2e-68 Identities = 108/242 (44%), Positives = 151/242 (62%), Gaps = 3/242 (1%) Query: 6 LLRYLGLALAAFAMPALV---QAETLTLASDGVGGQGFTVKTQILVLMTLLGLLPALLMT 62 + R L +A + + Q +T GGQ +++ Q LV +T L +PA+L+ Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 63 MTSFLRYVIVLSLVKQALGLQQGLPGRIVTGVALVLTMLTMRPVGEEIWQKAFVPYDQGK 122 MTSF R +IV L++ ALG P +++ G+AL LT M PV ++I+ A+ P+ + K Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 123 ISMQTALATSEQPLGRYMLAQTNKATLAQMAKLSGTEKVMDPEKQPFLVKLSAFVLSELK 182 ISMQ AL QPL +ML QT +A L A+L+ T + PE P + L A+V SELK Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELK 180 Query: 183 TAFQMGAMLFIPFLIVDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVNTLV 242 TAFQ+G +FIPFLI+D+++ASVLMA+GMMM+ P I+LP KL+LFVLVDGW L V +L Sbjct: 181 TAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240 Query: 243 TS 244 S Sbjct: 241 QS 242
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 73.8 bits (181), Expect = 3e-20 Identities = 31/72 (43%), Positives = 47/72 (65%) Query: 34 MRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVIKVNGTPVGLGEVVV 93 + ++ IPV+LT+E+G + + +LL GS V L+ LAGEPL I +NG + GEVVV Sbjct: 54 IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVV 113 Query: 94 SGEHYGLRIIEL 105 + YG+RI ++ Sbjct: 114 VADKYGVRITDI 125
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 36.4 bits (84), Expect = 3e-05 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 19/91 (20%) Query: 194 ALDDMWLDHLFARLDAQHLRPAPDSAQANVS----------------IPVTISVHVLSKN 237 ALDD+W D L A + A D+ + IPV ++V + Sbjct: 14 ALDDLWADAL-NEQKATTTKSAADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTR 72 Query: 238 MRLDELLRMRPGDVLPV-RLP-ETVDVLVNN 266 M + ELLR+ G V+ + L E +D+L+N Sbjct: 73 MTIKELLRLTQGSVVALDGLAGEPLDILING 103
>FLAGELLIN#Flagellin signature. Length = 507 Score = 110 bits (276), Expect = 2e-29 Identities = 59/290 (20%), Positives = 116/290 (40%), Gaps = 25/290 (8%) Query: 6 TNAAAMNIKKAIGSTSNSLNTTMTRLGTGLRINSAKDDAAGLQIAVRLQAQTRGMGMAMQ 65 TN+ ++ + + + +SL++ + RL +GLRINSAKDDAAG IA R + +G+ A + Sbjct: 6 TNSLSLLTQNNLNKSQSSLSSAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQASR 65 Query: 66 NTQNASSMLQTADGAMKEVTNILYRMKDLATQAADGSSSANEKTAMQAEYDALGKELSNI 125 N + S+ QT +GA+ E+ N L R+++L+ QA +G++S ++ ++Q E +E+ + Sbjct: 66 NANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRV 125 Query: 126 MKNTTYGGAKLLQKEVKNKDDGTVVSEGGRLTKEITFQIGATKDETMAADFSKHVANAHD 185 T + G K+L + ++ Q+GA ET+ D K + Sbjct: 126 SNQTQFNGVKVLSQ-----------------DNQMKIQVGANDGETITIDLQKIDVKS-- 166 Query: 186 KFEGLSASYTGPEAGKTEEPGKELTDNANATIDLINNVLDDVGALRSAIGAAENRLAHTH 245 G +E ++ + + R + + T Sbjct: 167 ------LGLDGFNVNGPKEATVGDLKSSFKNVTGYDTYAVGANKYRVDVNSGAVVTDTTA 220 Query: 246 NNLANMSTNTADAEGRIMDADMASESAKMSSQQVLLQASMSMLKQTSSMN 295 + + A D + + + + ++ Sbjct: 221 PTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAEAKAIAGAIK 270 Score = 75.1 bits (184), Expect = 3e-17 Identities = 58/306 (18%), Positives = 103/306 (33%), Gaps = 8/306 (2%) Query: 6 TNAAAMNIKKAIGSTSNSLNTTMTRLGTGLRINSAKDDAAGLQIAVRLQAQTRGMGMAMQ 65 N +++ T + T ++ D A AV L T+ + Sbjct: 202 ANKYRVDVNSGAVVTDTTAPTVPDKVYVNAANGQLTTDDAENNTAVDLFKTTKSTAGTAE 261 Query: 66 NTQNASSMLQTADGAMKEVTNILYRMKDLATQAADG--SSSANEKTAMQAEYDALGKELS 123 A ++ +G + + + + +G S++ N + D + Sbjct: 262 AKAIAGAIKGGKEGDTFDYKGVTFTIDTKTGNDGNGKVSTTINGEKVTLTVADITAGAAN 321 Query: 124 NIMKNTTYGGAKLLQKEVKNKDDGTVVSEGGRLTKEITFQIGATKDETMAADFSKHVANA 183 ++ + + + +++ ANA Sbjct: 322 VDAATLQSSKNVYTSVVNGQFTFDDKTKNESAKLSDLEANNAVKGESKITVNGAEYTANA 381 Query: 184 HDKFEGLSASYTGPEAGKTEEPGKELTDN------ANATIDLINNVLDDVGALRSAIGAA 237 L+ + + D + I++ L V A+RS++GA Sbjct: 382 AGDKVTLAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLASIDSALSKVDAVRSSLGAI 441 Query: 238 ENRLAHTHNNLANMSTNTADAEGRIMDADMASESAKMSSQQVLLQASMSMLKQTSSMNQM 297 +NR NL N TN A RI DAD A+E + MS Q+L QA S+L Q + + Q Sbjct: 442 QNRFDSAITNLGNTVTNLNSARSRIEDADYATEVSNMSKAQILQQAGTSVLAQANQVPQN 501 Query: 298 VLSLLQ 303 VLSLL+ Sbjct: 502 VLSLLR 507
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.0 bits (148), Expect = 6e-13 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 4/123 (3%) Query: 11 KPRIALLEDNVAHARTVRHWLEAAGYDAIVEYDGRRFIDRIGREKVDMLLLDWDVPGMTG 70 I + +D+ A + L AGYD + + I D+++ D +P Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 71 IDVLIDMRKRVDYLIPIVLLTQHDDERDILHGLSCGADDYLVKPISE---RMLIARVIAQ 127 D+L ++K +P+++++ + + GA DYL KP +I R +A+ Sbjct: 63 FDLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121 Query: 128 LRK 130 ++ Sbjct: 122 PKR 124
>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE signature. Length = 103 Score = 48.1 bits (114), Expect = 9e-11 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 27 QAPSADIAGGFADLLKQAVRRTDAQQHHADDLVTAVETGASD-DLVGAMLASQQASLSFS 85 Q FA L A+ R Q A G L M Q+AS+S Sbjct: 23 QESLPQPTISFAGQLHAALDRISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQ 82 Query: 86 TMIQVRNKVMSAFDDIIKMQV 106 IQVRNK+++A+ +++ MQV Sbjct: 83 MGIQVRNKLVAAYQEVMSMQV 103
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 298 bits (764), Expect = 2e-96 Identities = 154/548 (28%), Positives = 255/548 (46%), Gaps = 44/548 (8%) Query: 30 ALSKLAPIVILAISLAALTMMLMHRQDSRYKPLFGSQEAVVAADMMAALDAEGIPYRIHP 89 A ++ IV + ++A + M++ + Y+ LF + ++A L IPYR Sbjct: 21 ANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFAN 80 Query: 90 DSGQVLVPEQKLGAARMMLAAKGVVGKLPEGLEQVDKSDPLGVSQFVQDVRFRRGLEGEL 149 SG + VP K+ R+ LA +G+ G E +D+ G+SQF + V ++R LEGEL Sbjct: 81 GSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQE-KFGISQFSEQVNYQRALEGEL 139 Query: 150 TQSIMALEPVSSARVHLSIAKSASFILADGDKSSASVVLTLKPNRKLNKEQIAAIVALVA 209 ++I L PV SARVHL++ K + F+ + SASV +TL+P R L++ QI+A+V LV+ Sbjct: 140 ARTIETLGPVKSARVHLAMPKPSLFV-REQKSPSASVTVTLEPGRALDEGQISAVVHLVS 198 Query: 210 GSVANLDPARVTVIDQSGNHLSAQIDLVLGNSTLDSELG--AQMREQVLRNIRELLTPVL 267 +VA L P VT++DQSG+ L+ G D++L + ++ R I +L+P++ Sbjct: 199 SAVAGLPPGNVTLVDQSGHLLTQSNT--SGRDLNDAQLKFANDVESRIQRRIEAILSPIV 256 Query: 268 GDGNFRASVAVELDHDRVEETREQYGEAPKVTQEAIR------DEKDIGQAALGVPGSLS 321 G+GN A V +LD E+T E Y ++ +R E+ GVPG+LS Sbjct: 257 GNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALS 316 Query: 322 NRPAPPSTASMPEAPHSAKNAQ-----------------------TRQYAYDRNVVQIKR 358 N+PAPP+ A + P + +NAQ T Y DR + K Sbjct: 317 NQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKM 376 Query: 359 SPVRVKRLNVAVVLNNAAAPGG-GKAWAPAQLAQVDTILRDGLGIDADRDDALTVSSLDF 417 + ++RL+VAVV+N G Q+ Q++ + R+ +G R D L V + F Sbjct: 377 NVGDIERLSVAVVVNYKTLADGKPLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPF 436 Query: 418 RGT-PVTESQPWWKQPDNLVTIGTWAAWALGALLGFVFIFRPLLKVLRIWANGGRDPLSQ 476 P+W+Q + + W L ++ ++ + + L + Q Sbjct: 437 SAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQ 496 Query: 477 GANAVSGGPEAPALAAAADADTQPLLLADANLPPIGSGADVLIAHLKHLAAQDPERVAEV 536 + + Q A+ L GA+V+ ++ ++ DP VA V Sbjct: 497 AQVRQETEEAVEVRLSKDEQLQQ--RRANQRL-----GAEVMSQRIREMSDNDPRVVALV 549 Query: 537 IKPWIRDD 544 I+ W+ +D Sbjct: 550 IRQWMSND 557
>FLGMOTORFLIG#Flagellar motor switch protein FliG signature. Length = 344 Score = 173 bits (441), Expect = 1e-53 Identities = 85/331 (25%), Positives = 167/331 (50%), Gaps = 6/331 (1%) Query: 23 SLAAVERAAIILLSIGEEAAAGVLRCLSREELLDVTLAMSRMQGVKVDAVQNTIERFFTN 82 +L ++AAI+L+SIG E ++ V + LS+EE+ +T +++++ + + N + F Sbjct: 14 ALTGKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKEL 73 Query: 83 FREQSGVRGASRSFLQRSLEMALGGVVANSVLNKIYGDAIGPKMARLQWAQPQWLADRLR 142 Q ++ + + LE +LG A ++N + ++ A P + + ++ Sbjct: 74 MMAQEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQ 133 Query: 143 DEHVRMQAMFLVFLPPEQASRVIQALPEARREQVLLDIARLTEIDHDLLRDLEDVVDSCV 202 EH + A+ L +L P++AS ++ +LP + V IA + +++R++E V++ + Sbjct: 134 QEHPQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKL 193 Query: 203 ANLGT-QSTAVEGVRQAADIINRMPGDRTQ---MVEILRARDPELVAAVEDLIYDFAVIA 258 A+L + T+ GV +IIN DR ++E L DPEL ++ ++ F I Sbjct: 194 ASLSSEDYTSAGGVDNVVEIINMA--DRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIV 251 Query: 259 NQDDEVISVILEHVDTALWGVALKGADPAVRDALLRSMPRRAVQAFEEMLRRTEPALPSK 318 DD I +L +D ALK D V++ + ++M +RA +E + P Sbjct: 252 LLDDRSIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKD 311 Query: 319 VESARREIMDIIRGLADDGDIELRLVAEEEL 349 VE ++++I+ +IR L + G+I + EE++ Sbjct: 312 VEESQQKIVSLIRKLEEQGEIVISRGGEEDV 342
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 55.2 bits (132), Expect = 2e-11 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 5/191 (2%) Query: 15 IRAASEQLGEFAAPD---EVGLLSEQLHAPPTGELLDEARQAGYADGFAAGERVGAEGAR 71 I E + E A P ++ L Q H + E RQ G+ G+ G G E Sbjct: 25 IVEPEETIIEEAEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGL 84 Query: 72 RDVRSGFDALVAPVDALVRGFQRVQQAYRAKVRSEVAKLVGDVARQVVRAELETRPERIL 131 + +S + A + LV FQ A + + S + ++ + ARQV+ ++ Sbjct: 85 AEAKSQQAPIHARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALI 144 Query: 132 AFVDEAVGTLTKPPESVSVRLNPSDYARLAQ--AAPDRVHGWQLVPDDRLEPGECRVRAD 189 + + + +R++P D R+ A +HGW+L D L PG C+V AD Sbjct: 145 KQIQQLLQQEPLFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSAD 204 Query: 190 DIEMDAGCGQR 200 + ++DA R Sbjct: 205 EGDLDASVATR 215
>FLGHOOKFLIK#Flagellar hook-length control protein signature. Length = 375 Score = 28.6 bits (63), Expect = 0.050 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 237 ASVPETGAPTAPQQRLIDALGERLSVQMAQGTRQAVIRLEPGSNGSIHIELRQNANGMAV 296 + P AP + +L + +S+ QG + A +RL P G + I L+ + N + Sbjct: 226 VAAPVLSAPLGSHE-WQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQI 284 Query: 297 HLSATHPEVVFQLQAIGESLRQDL 320 + + H V L+A LR L Sbjct: 285 QMVSPHQHVRAALEAALPVLRTQL 308
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 33.8 bits (77), Expect = 9e-04 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Query: 216 VMGHTDSVPYRNSDSGSRS-NWDLSVDRAMSARSWVLQGGVNSEQVMQVIGMADRAPLVN 274 V+G+TD + GS + N LS RA S +++ G+ ++++ GM + P+ Sbjct: 257 VLGYTDRI-------GSDAYNQGLSERRAQSVVDYLISKGIPADKI-SARGMGESNPVTG 308 Query: 275 NPRAAINRRIEFLV-LTPER 293 N + +R + L P+R Sbjct: 309 NTCDNVKQRAALIDCLAPDR 328
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 134 bits (339), Expect = 4e-40 Identities = 75/200 (37%), Positives = 98/200 (49%), Gaps = 4/200 (2%) Query: 55 ATEPHLSSQAATWTNMMRARAEALAEPQQGVLGNGAPATGPNFADS---DQQAFLAEIMP 111 E L ++ M + Q + A N+ DS D +AFLA++ Sbjct: 99 TPEQPLPEESTPAAPMKFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSL 158 Query: 112 HARRAGAMIGAAPELIAAHAALESGWGSKPLKNVRGETTHNLFGIKSAGGWAGESAAAVT 171 A+ A G LI A AALESGWG + ++ GE ++NLFG+K++G W G T Sbjct: 159 PAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITT 218 Query: 172 TEYVNGSAVKMVDHFRAYRSYSGAFHDYAKLLRDSRRYAGVRNVGDDASAFASALKRGGY 231 TEY NG A K+ FR Y SY A DY LL + RYA V A A AL+ GY Sbjct: 219 TEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAV-TTAASAEQGAQALQDAGY 277 Query: 232 ATDPAYATKLVEMVGLVKRM 251 ATDP YA KL M+ +K + Sbjct: 278 ATDPHYARKLTNMIQQMKSI 297
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 30.3 bits (68), Expect = 0.002 Identities = 8/39 (20%), Positives = 17/39 (43%) Query: 91 SNVSAVEEMADMMAASRAFSTNVEVLTRIKGMQQDLLRM 129 S V+ EE ++ + + N +VL + L+ + Sbjct: 507 SGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 35.7 bits (82), Expect = 3e-04 Identities = 15/43 (34%), Positives = 23/43 (53%) Query: 345 RAVEQSNVDMTAELVSLMGAQQNYQANSKVLSTENEMMRALMQ 387 + S V++ E +L QQ Y AN++VL T N + AL+ Sbjct: 502 QQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 544 Score = 29.9 bits (67), Expect = 0.021 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 2 SFNIALAGINAINGQLNQISNNIANSGTLGFKSGR 36 N A++G+NA LN SNNI++ G+ Sbjct: 3 LINNAMSGLNAAQAALNTASNNISSYNVAGYTRQT 37
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 33.0 bits (75), Expect = 0.001 Identities = 10/46 (21%), Positives = 20/46 (43%) Query: 5 LYTAMTGAEHSLRALNVRANNLSNAQTSGFRADLASVTSQAARGYG 50 + AM+G + ALN +NN+S+ +G+ + + Sbjct: 4 INNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGA 49
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 38.0 bits (88), Expect = 3e-05 Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 208 NGIGTIKQGALEGSNVLAVEEMVEMIAAQRTYEMNTKVLSAADNMMQYL 256 N + + S V EE + Q+ Y N +VL A+ + L Sbjct: 494 NVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDAL 542 Score = 35.7 bits (82), Expect = 2e-04 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 13/74 (17%) Query: 7 ISKTGIQAQDAKLQAIANNLANVNTVGFKRDRAVFEDMFYRAERQPGAQVSDNATGPGVQ 66 + +G+ A A L +NN+++ N G+ R + +++ G G Sbjct: 6 NAMSGLNAAQAALNTASNNISSYNVAGYTRQTTI-------------MAQANSTLGAGGW 52 Query: 67 LGNGTRIAGTQKVF 80 +GNG ++G Q+ + Sbjct: 53 VGNGVYVSGVQREY 66
>FLGLRINGFLGH#Flagellar L-ring protein signature. Length = 232 Score = 140 bits (354), Expect = 1e-43 Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 6/162 (3%) Query: 59 LTSDVRAFRAGDVLTVDLEESTQASKKSGTQVGKDS----SLSAKKPSLFGKALPVEAEL 114 L D R GD LT+ L+E+ ASK S +D L G A++ Sbjct: 65 LFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADV 124 Query: 115 GTKSG--FNGAGSSSQQNTLRGSVTVVVQRVMPNGLLQVRGEKRLVLNQGEENVRLAGYV 172 G FNG G ++ NT G++TV V +V+ NG L V GEK++ +NQG E +R +G V Sbjct: 125 EASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVV 184 Query: 173 RAADIDSNNRVSSQRVANARITYAGRGSLADASQPGMLTRFF 214 I +N V S +VA+ARI Y G G + +A G L RFF Sbjct: 185 NPRTISGSNTVPSTQVADARIEYVGNGYINEAQNMGWLQRFF 226
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 309 bits (792), Expect = e-105 Identities = 136/372 (36%), Positives = 199/372 (53%), Gaps = 10/372 (2%) Query: 7 TIRAAALAIVIGIALSSTIEAHAQTVGNLVDVEGVRENALVGYGIVVGLAGSGDGT-QAK 65 I AA + + + +A + ++ ++ R+N L+GYG+VVGL G+GD + Sbjct: 6 IIAAALVFSALPFLSTPPAQADTSRIKDIASLQAGRDNQLIGYGLVVGLQGTGDSLRSSP 65 Query: 66 YTTQSLTNMLKQFGTRLPENINLRSRNAAAVIVSATFPPGYRRGQKVDVTVSSLGDAKSL 125 +T QS+ ML+ G ++N AAV+V+A PP G +VDVTVSSLGDA SL Sbjct: 66 FTEQSMRAMLQNLGITTQGG-QSNAKNIAAVMVTANLPPFASPGSRVDVTVSSLGDATSL 124 Query: 126 RGGTLLMTPLRAADGDVYALAQGNLVIPGLNVQGRSGTSVTINTPTTGRIPKGATIEREI 185 RGG L+MT L ADG +YA+AQG L++ G + QG ++T T+ R+P GA IERE+ Sbjct: 125 RGGNLIMTSLSGADGQIYAVAQGALIVNGFSAQG-DAATLTQGVTTSARVPNGAIIEREL 183 Query: 186 ATDFADTPTVRLNLKRPDFQTASSIADVINN----ALGSEVASTVDATSVDVVAPQVPSQ 241 + F D+ + L L+ PDF TA +ADV+N G +A D+ + V P+ + Sbjct: 184 PSKFKDSVNLVLQLRNPDFSTAVRVADVVNAFARARYGDPIAEPRDSQEIAVQKPR-VAD 242 Query: 242 RVAFVARLNALKVSKGAEVPRVVFNSRTGTVVISQGVTVKPAVVSHGSLKVTIAEGTMVS 301 +A + L V +VV N RTGT+VI V + VS+G+L V + E V Sbjct: 243 LTRLMAEIENLTVETDT-PAKVVINERTGTIVIGADVRISRVAVSYGTLTVQVTESPQVI 301 Query: 302 QPNAFANGSTVTAPVSEIGVTQAGGNAFQWTSGASLQAIVDTITRTGATPDDLMAILQAL 361 QP F+ G T P ++I Q G G L+ +V + G D ++AILQ + Sbjct: 302 QPAPFSRGQTAVQPQTDIMAMQEGSKVAI-VEGPDLRTLVAGLNSIGLKADGIIAILQGI 360 Query: 362 SEAGALTGDLVV 373 AGAL +LV+ Sbjct: 361 KSAGALQAELVL 372
>FLGFLGJ#Flagellar protein FlgJ signature. Length = 313 Score = 36.2 bits (83), Expect = 8e-06 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%) Query: 14 ASIETAAVKAPDEAYRARVEDAAVKFEGLFIAQMLSEMKKATDQFKADNGFADRSSEAMI 73 S+ KA ++ A + A + EG+F+ ML M+ A + D F+ + Sbjct: 16 QSLNELKAKAGEDP-AANIRPVARQVEGMFVQMMLKSMRDALPK---DGLFSSEHTRLYT 71 Query: 74 DYANRAVADAIAKQRGFGIADTLVAQMLPPDATPSKD 110 ++ +A + +G G+A+ +V QM P P + Sbjct: 72 SMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQPLPEES 108
>FLGHOOKAP1#Flagellar hook-associated protein signature. Length = 546 Score = 113 bits (283), Expect = 3e-29 Identities = 77/312 (24%), Positives = 129/312 (41%), Gaps = 17/312 (5%) Query: 1 MDRSARNTANQQTVGYTRQGVLRTARAS---------GGVDASSVIRFGDH-ANTQQKWA 50 ++ ++ N ++ GYTRQ + S GV S V R D Q + A Sbjct: 18 LNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAA 77 Query: 51 SHGSVGEHRAVESYFRQLEEVMGLKDGSIKVSMGKFFGALDAASADVANSALRQQVLLAA 110 S G A +++ ++ S+ M FF +L ++ + A RQ ++ + Sbjct: 78 QTQSSG-LTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKS 136 Query: 111 GGMAKSFNSVQQMMRGQLDTLRQQSAATVEQINGLSRTAAELNRLVAEAEANGGA--PSE 168 G+ F + Q +R Q + A+V+QIN ++ A LN ++ G P+ Sbjct: 137 EGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNN 196 Query: 169 LIDQRDQAIDQLSALVDIRTVRQPDGTVDVSLAGGTPLIAGHQVAKMRVETLSGGTFELK 228 L+DQRDQ + +L+ +V + Q GT ++++A G L+ G ++ S Sbjct: 197 LLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRTT 256 Query: 229 LEL----AGTQYPVDGAKIGGELGGLSSFAKDTLLPQMEAIRSLAAELAGSFNEQVTAGF 284 + AG + G LGG+ +F L + LA A +FN Q AGF Sbjct: 257 VAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGF 316 Query: 285 GMGGSPGKALFT 296 G G+ F Sbjct: 317 DANGDAGEDFFA 328 Score = 63.4 bits (154), Expect = 7e-13 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 317 SGDPKAPGNSDNLLKLIELRSRRVDLPGFGEASLGDAYVLLVGKLGAQSEQNQSSLAIAV 376 S + ++ N L++L+S G S DAY LV +G ++ ++S A Sbjct: 436 SEEDAGDSDNRNGQALLDLQSN--SKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQG 493 Query: 377 NVRQRAEEAWQSLSGVSMDEEAVNFSEALQVYSANMKVISVAKELFDATI 426 NV + QS+SGV++DEE N Q Y AN +V+ A +FDA I Sbjct: 494 NVVTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALI 543
>FLAGELLIN#Flagellin signature. Length = 507 Score = 35.4 bits (81), Expect = 2e-04 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 6/138 (4%) Query: 13 LATLRASNSKAADLTSKISTGQRVQRASDDPIAAARLLLIERDTSV---LQRYQKNIDTL 69 L S S + ++S+G R+ A DD AA + R TS L + +N + Sbjct: 14 QNNLNKSQSSLSSAIERLSSGLRINSAKDD---AAGQAIANRFTSNIKGLTQASRNANDG 70 Query: 70 SVRLQKNEVHLDGMLDTVMAVHDSLLSAADGSRSAADLNALAAPLRMRLNNLKQAANAKD 129 Q E L+ + + + V + + A +G+ S +DL ++ ++ RL + + +N Sbjct: 71 ISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSNQTQ 130 Query: 130 GDGNFLFSGSQTNTAPIA 147 +G + S + Sbjct: 131 FNGVKVLSQDNQMKIQVG 148
>PF00577#Outer membrane usher protein FimD Length = 878 Score = 76.0 bits (187), Expect = 4e-16 Identities = 101/683 (14%), Positives = 206/683 (30%), Gaps = 100/683 (14%) Query: 152 LPASGSTGLIAYNY-LNLTGGQGREIGGRYSFDAIG----SVGNWSITTGLQATQNRGM- 205 L G + NY + Q R G + ++G W + + N Sbjct: 177 LWDPGINAGLL-NYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDS 235 Query: 206 RRASEIEYSVPRLYAQREFEGKFAR--AG--FFTPDLATGIRPPRMPGGGAATTLGVMFG 261 S+ ++ + +R+ +R G + D+ GI G Sbjct: 236 SSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGIN-----------FRGAQLA 284 Query: 262 TSEAREVEGARPSLYPVYVTANRQGMVEIYRNGALIHSQAVQPGLQVVDTRPLPSGIYEV 321 + + + R ++ A V I +NG I++ V PG ++ ++ Sbjct: 285 SDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDL 344 Query: 322 EVRLVE-DGQVTSTQHELVYKPAAWSDPTQR---WKYAFFAGQERNLIGEDRSHAFTAGG 377 +V + E DG P + QR +Y+ AG+ R+ + F Sbjct: 345 QVTIKEADGSTQIFT-----VPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQST 399 Query: 378 AINYLAHPRVVLGASAQHVADANVFGASLDWQFTDRARTYWNVYHSSKHGVGGDVQILMP 437 ++ L + Q F + ++ ++ Sbjct: 400 LLHGLP-AGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQS 458 Query: 438 YR----------DGSVSL---SHSQRWQRSDRRHRNGRSSVRSGKVQDSAITWSHRFTPQ 484 R ++ L +S + R + + + QD I +FT Sbjct: 459 VRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDY 518 Query: 485 TSIMSR-------------ASYASGATTGLGVD----------LSVSHRHSLFGNDLTWR 521 ++ ++ +G + D+ W Sbjct: 519 YNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAF--EDINWT 576 Query: 522 VSGFDRPTGTLARTRNRGVDLGLSIALGKEKRSYNVNLGTRSGSDGQRDHYASLGVRQEL 581 +S + + R++ + L ++I RS + + + + H + + Sbjct: 577 LS-YSLTKNAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNL- 634 Query: 582 DAGFFKSVGANGTVDRYGLSMGATTQ-FEHSVARGDAFLQRSSKEGGIAGGMNLSS---- 636 AG + ++ + + Y + G +S + G A L G G + S Sbjct: 635 -AGVYGTLLEDNNLS-YSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQ 692 Query: 637 -TVGTNGKSAAVSGKGNAF---NGESAVIVDLASDFEDVKVHAQDTSGGSIELRPGRNLV 692 G +G G ++ V+V A +D KV ++ +G + R G ++ Sbjct: 693 LYYGVSG-GVLAHANGVTLGQPLNDTVVLVK-APGAKDAKV--ENQTGVRTDWR-GYAVL 747 Query: 693 P-VSAYRAGRLQYFFDRSQAPA-ATLQPAATHYHLNKGGVGYEKVHVMKTMTVIGRLVDH 750 P + YR R+ D + L A + +G + + + ++ L H Sbjct: 748 PYATEYRENRVA--LDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTL-TH 804 Query: 751 SGKPVRAAHLSSPAGRSVTEADG 773 + KP+ P G VT Sbjct: 805 NNKPL-------PFGAMVTSESS 820
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.1 bits (125), Expect = 4e-10 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 7/122 (5%) Query: 13 RINVVVADDHPVVSTGVAAILTAEMDINVVGVASTISELLLLLQQQPCDVLICDYSFSGD 72 ++VADD + T + L+ +V ++ + L + D+++ D + Sbjct: 3 GATILVADDDAAIRTVLNQALSRA-GYDVRITSNA-ATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 73 QQPDGVALFKRLRRNHPHVAIVVLTAHQDIALLVSRVMNTGVAGFLRKSSQDFARLAAIV 132 + L R+++ P + ++V++A + G +L K D L I+ Sbjct: 61 ---NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIK-ASEKGAYDYLPKPF-DLTELIGII 115 Query: 133 RR 134 R Sbjct: 116 GR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 61.4 bits (149), Expect = 1e-11 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 898 SDASVLVVEDDRVSAQLMCDQLRMLGIGHVEVVCSAEDGIRRCQSRIYDLVVTDSNLPGK 957 + A++LV +DD ++ L G V + +A R + DLVVTD +P + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGY-DVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 958 GGAELLSDLRAAGISWPVVLCTADATLSR-VANVPFDAL--ITKPSTLSDLSHVLQNVLG 1014 +LL ++ A PV++ +A T + A + KP L++L ++ L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 1015 P 1015 Sbjct: 121 E 121
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 35.6 bits (82), Expect = 2e-04 Identities = 17/110 (15%), Positives = 46/110 (41%), Gaps = 5/110 (4%) Query: 32 KINIVVADSYPMIVQGLRHVFSSVENMRIVAEAHTLSGMASLLSSCECDVLICDYAFGDD 91 I+VAD I L S + ++ + +++ + D+++ D Sbjct: 3 GATILVADDDAAIRTVLNQALSR-AGYDVRITSNAATLWR-WIAAGDGDLVVTDVV---M 57 Query: 92 PGPDGMRMLETIRRNHPNVKIILLAELRDGLSVQRVLKKGVSAFVVKSSD 141 P + +L I++ P++ +++++ ++ + +KG ++ K D Sbjct: 58 PDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFD 107
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 7e-19 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 995 SGTRILVVDDHPINRLVIEAQLARLGYTAIAVSNGTDALHALDDSDIALVLSDCAMPDMD 1054 +G ILV DD R V+ L+R GY SN + D LV++D MPD + Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 1055 GYDLARRIRSREPRSRHIPILALTANALPDEAIRCAEAGMDGLIVKPTTLTVLREELAR 1113 +DL RI+ P +P+L ++A AI+ +E G + KP LT L + R Sbjct: 62 AFDLLPRIKKARP---DLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 52.9 bits (127), Expect = 2e-10 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 4/119 (3%) Query: 4 RVVLADDHPIMLLGCRLLIEQNGMEVVGEARDSSELMSILAHVACDVVITDFSMPNTGRA 63 +++ADD + + + G +V +++ L +A D+V+TD MP Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMP---DE 60 Query: 64 DGLAMLSTLRREHGALPVIVLTNMANAGLLRAMLNEGVLGIVEKGAEKSELFAAVRTAL 122 + +L +++ LPV+V++ +G + K + +EL + AL Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 61.1 bits (147), Expect = 1e-11 Identities = 50/163 (30%), Positives = 93/163 (57%), Gaps = 9/163 (5%) Query: 556 GMRTIANSDNSVAIGNMAQTGSEQPYSVAIGSHVTTNGASALAIGSQARANGENAIAVGN 615 G+ A +S+AIG A+ + + +VA+G+ G +++AIG ++A G++A+ G Sbjct: 62 GLNASAKGIHSIAIGATAE--AAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 616 NNVHAIGESSIAIGNGAEAVVGATNGIALGTGASVARNVTDAMALGAKAFVEKRANGAVA 675 + + +AIG A + G+A+G + + +++A+G + V ++A Sbjct: 120 ASTAQ--KDGVAIGARAST---SDTGVAVGFNSKA--DAKNSVAIGHSSHVAANHGYSIA 172 Query: 676 LGAGSQASRANTISVGNAGSERQIVNVAAGTQGTDAVNVAQLQ 718 +G S+ R N++S+G+ RQ+ ++AAGT+ TDAVNVAQL+ Sbjct: 173 IGDRSKTDRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLK 215 Score = 47.6 bits (112), Expect = 2e-07 Identities = 50/148 (33%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 347 AAGSADTDAVNVGQLTAATQPIRDELADVSLAMKSIQIKPQGVDAIAAGTNA----VAVG 402 AA + ++ G + A P+ L D ++ + + AI A + VAVG Sbjct: 85 AAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARASTSDTGVAVG 144 Query: 403 AGANAMANGSIALGAGSRVTGLN--SVAIGINSVALETNQVSVGDVGRERRISNLAAGTK 460 + A A S+A+G S V + S+AIG S N VS+G R++++LAAGTK Sbjct: 145 FNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHESLNRQLTHLAAGTK 204 Query: 461 GTDAVNLNQLSDAIGKVSSRTDKLSFDL 488 TDAVN+ QL I K T+K S +L Sbjct: 205 DTDAVNVAQLKKEIEKTQENTNKRSAEL 232 Score = 45.3 bits (106), Expect = 1e-06 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%) Query: 386 PQGVDAIAAGTNAVAVGAGANAMANGSIALGAGSRVTGLNSVAIGINSVALETNQVSVGD 445 G++A A G +++A+GA A A ++A+GAGS TG+NSVAIG S AL + V+ G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 446 VGRERR----ISNLAAGTKGTDAVNLNQLSDAIGKVS 478 ++ I A+ + AV N +DA V+ Sbjct: 120 ASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVA 156 Score = 44.9 bits (105), Expect = 1e-06 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 9/128 (7%) Query: 865 IGTGSGSV----INSDAGDTTAIGANSTQQASSGTAIGAGADARAINSTAIGQAASAHGE 920 I TG SV ++ GD+ ++ G AIGA A + A+G + A + Sbjct: 94 IATGVNSVAIGPLSKALGDSAVTYGAASTAQKDGVAIGARAST-SDTGVAVGFNSKADAK 152 Query: 921 NSTAVGQGATAWGNN--SIAIGAGSVADADNAVSFGNSATGMTRTLTNVSAGVAPTDAVN 978 NS A+G + N+ SIAIG S D +N+VS G+ + + R LT+++AG TDAVN Sbjct: 153 NSVAIGHSSHVAANHGYSIAIGDRSKTDRENSVSIGHES--LNRQLTHLAAGTKDTDAVN 210 Query: 979 VQQLDESV 986 V QL + + Sbjct: 211 VAQLKKEI 218 Score = 40.7 bits (94), Expect = 3e-05 Identities = 28/62 (45%), Positives = 38/62 (61%) Query: 898 GAGADARAINSTAIGQAASAHGENSTAVGQGATAWGNNSIAIGAGSVADADNAVSFGNSA 957 G A A+ I+S AIG A A + AVG G+ A G NS+AIG S A D+AV++G ++ Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 958 TG 959 T Sbjct: 122 TA 123 Score = 36.8 bits (84), Expect = 5e-04 Identities = 84/389 (21%), Positives = 142/389 (36%), Gaps = 39/389 (10%) Query: 655 TDAMALGAKAFVEKRANGAVALGAGSQASRANTISVG---NAGSERQIVNVAAGTQGTDA 711 ++A+GA A K A AVA+GAGS A+ N++++G A + + AA T D Sbjct: 70 IHSIAIGATAEAAKGA--AVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAASTAQKDG 127 Query: 712 VNVAQLQGAAASLASVIGGDTTVDGSGHVAIHSIEVSGHKYATVSAAVQAAAAYGATDSL 771 V + + + + +G ++ D VAI GH + AA +G + ++ Sbjct: 128 VAIGA-RASTSDTGVAVGFNSKADAKNSVAI------GH-------SSHVAANHGYSIAI 173 Query: 772 AVRYDLDSHGNPNYGSVTLGGPSAAPVMLTNVADGKSRYDAVNYGQLSSLQSDFENRMGA 831 R D + + G +L LT++A G DAVN QL Sbjct: 174 GDRSKTDRENSVSIGHESLNR------QLTHLAAGTKDTDAVNVAQLKK----------- 216 Query: 832 MDDRVSKIETDTGDSRDDSRVMTMANLRRDNNDIGTGSGSVINSDAGDTTAIGANSTQQA 891 + K + +T + A ++ + + + +S + +T Sbjct: 217 ---EIEKTQENTNKRSAELLANANAYADNKSSSVLGIANNYTDSKSAETLENARKEAFAQ 273 Query: 892 SSGTAIGAGADARAINSTAIGQAASAHGENSTAVGQGATAWGNNSIAIGAGSVADADNAV 951 S A A + ++ T + A + + A N A S ++ Sbjct: 274 SKDVLNMAKAHSNSVARTTLETAEEHANSVARTTLETAEEHANKKSAEALASANVYADSK 333 Query: 952 SFGNSATGMTRTLTNVSAGVAPTDAVNVQQLDESVGGLRSQIEHDRADANGGTASAVAIA 1011 S T + T VS + Q D L ++++ + G AS+ A+ Sbjct: 334 SSHTLKTANSYTDVTVSNSTKKAIRESNQYTDHKFRQLDNRLDKLDTRVDKGLASSAALN 393 Query: 1012 SLPQAPAPGKSVVAVGGGTYAGQSALAVG 1040 SL Q GK G G Y ALA+G Sbjct: 394 SLFQPYGVGKVNFTAGVGGYRSSQALAIG 422 Score = 36.4 bits (83), Expect = 6e-04 Identities = 26/96 (27%), Positives = 46/96 (47%) Query: 884 GANSTQQASSGTAIGAGADARAINSTAIGQAASAHGENSTAVGQGATAWGNNSIAIGAGS 943 G N++ + AIGA A+A + A+G + A G NS A+G + A G++++ GA S Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 944 VADADNAVSFGNSATGMTRTLTNVSAGVAPTDAVNV 979 A D ++T T ++ ++V + Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAI 157
>MPTASEINHBTR#Metalloprotease inhibitor signature. Length = 122 Score = 28.8 bits (64), Expect = 0.024 Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 438 DQYLVQRGLPIAPARWNPATPIIASLEADGTGI 470 D ++ L P W+P I + A+GTGI Sbjct: 63 DVACAEQWLGDKPVSWSPTPDGIWLMNAEGTGI 95
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 48.9 bits (116), Expect = 4e-08 Identities = 33/262 (12%), Positives = 78/262 (29%), Gaps = 39/262 (14%) Query: 24 AQQAARSAEAFARAAAAEARAAAERHAAAEAEAQAAAQRHTAAAADAEAAQ----RRHAD 79 AQ + EA + A + + E Q + TA E A+ + Sbjct: 1063 AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEV 1122 Query: 80 ATAAAEAAAQRHTDAATQAEAASQRHAEATALTE---ALAQRHADAEAASQRHAAAIAEA 136 ++ + ++ Q +A R + T + + AD E ++ ++ + + Sbjct: 1123 PKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQP 1182 Query: 137 EAAAQRHHAAATEADAAAQRHAAATAEAEAAAKRHAEATAEAEAAAQRHMAAIAEAEALA 196 + T + + E T A + + + + Sbjct: 1183 VTEST-------------------TVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRH 1223 Query: 197 QRHTQALADTQAAAQRHAEATAEAEAITQRHAEAIAQAEAAAQRHAEATAEAEAITQRHT 256 +R +++ E + +A + + ++A A Q Sbjct: 1224 RRSVRSVPHNV-----------EPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQ--F 1270 Query: 257 EAIAQAEAAAQHHAKAIADAEA 278 A+ +A +QH ++ + E Sbjct: 1271 VALNVGKAVSQHISQLEMNNEG 1292
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 60.6 bits (147), Expect = 2e-12 Identities = 57/350 (16%), Positives = 119/350 (34%), Gaps = 54/350 (15%) Query: 9 VLVTGASGFVGSAVARIAQQKGYAVRVL------VRPTSPRTNVADL---DAEIVTGDMR 59 LVTGA+GF+G V++ + G+ V + + + + L + D+ Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLA 62 Query: 60 DEASMRAALR--GVRYLLHVAAD--YRLWAPDPDEIERANLEGAVATMRAARAEGVERIV 115 D M + R +P +NL G + + R ++ ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 116 Y--TSSVATLKVTSAGDPSDENRPLTAEQAIGVYKRSKVLAERAVERMIADEGLPAVIVN 173 Y +SSV L + P + + + +Y +K E GLPA + Sbjct: 123 YASSSSVYGL---NRKMPFSTDDS--VDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177 Query: 174 PSTPIGPR---DVKPTPTGRIIVEAALGKIPAFVDTGLNLVHVDDVAHGHFLALERGRIG 230 T GP D+ + ++E + + + ++DD+A Sbjct: 178 FFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEA----------- 226 Query: 231 ERYILGGENLPLQQMLADIAQMTGRKAPTIALPRWPLY--------PLAVGAEAVAKFTK 282 I+ +++ AD P ++ + +Y L +A+ Sbjct: 227 ---IIRLQDVIPH---ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG 280 Query: 283 KEPFVTVDGLRMSKNKMYFTSA---KAERELGYR-ARPYREGLRDALDWF 328 E + L + + TSA +G+ ++G+++ ++W+ Sbjct: 281 IE--AKKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWY 328
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 33.4 bits (76), Expect = 2e-04 Identities = 13/60 (21%), Positives = 20/60 (33%) Query: 86 NRTLFIYDLDIVPSRRRQGWATRALDALDAEAHRYGVTEIGLSVFNHNAAARALYRSCGF 145 N I D+ + R++G T L A + L + N +A Y F Sbjct: 87 NGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>cloacin#Cloacin signature. Length = 551 Score = 27.4 bits (60), Expect = 0.041 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 88 GAAFNGGTGAAVGAGAGLLAGSVVGAGAAQGSAYDVQRR-YDYAYLQCMYATGNRVPVPG 146 G N G + G G G VG GA+ GS + + + ++ G G Sbjct: 6 GRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNG 65 Query: 147 GMSGGSGGGYGGGGYGTAPRAA 168 G +G SGGG G GG +A A Sbjct: 66 GGNGNSGGGSGTGGNLSAVAAP 87
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 30.0 bits (67), Expect = 0.014 Identities = 46/198 (23%), Positives = 66/198 (33%), Gaps = 18/198 (9%) Query: 8 TVTRPGQAMLAAMTAAETGDDVWGDDPTVLRLQAVTAERAGKEAGLFFPSGTQSNLAALM 67 TVT ++A D W DD L + A+ + ++ L G Q Sbjct: 112 TVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQ------- 164 Query: 68 SHCERGDEYIVGQLAHTYKYEGGGAAVLGSIQPQPIENAPDGTLPLAKIAAAIKPLDNHF 127 ERG V + A GG + G++Q E+ P + L P Sbjct: 165 --IERGANVTVQRSA----IVDGGLHI-GALQSLQPEDLPPSRVVLRDTNVTAVPASGAP 217 Query: 128 ARTRLL-ALENTIGGQVLPEGYVQEAVAFARSRGLSTHLDGARVCNAAVASGRPIAELCA 186 A +L A E T+ G + G A A +G HL A + +G + Sbjct: 218 AAVSVLGASELTLDGGHITGG---RAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAV 274 Query: 187 PFDTVSICFSKGLGAPVG 204 P V F G PV Sbjct: 275 PGGAVPGGFGPGGFGPVL 292
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 45.6 bits (108), Expect = 2e-07 Identities = 57/377 (15%), Positives = 122/377 (32%), Gaps = 54/377 (14%) Query: 57 LAPDLGASARAIGFVPTLTQLGYALGILLLAPLGDRFDRRRVIVTKAAALVVALLLASIA 116 +A D + +V T L +++G + L D+ +R+++ ++ + Sbjct: 40 IANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVG 99 Query: 117 PS-LGLLLAASF--AIGLAATMAQDVVPAAATLAHDAHRGRIVGTVMTGLLLGILLSRVV 173 S LL+ A F G AA A +V A +RG+ G + + + +G + + Sbjct: 100 HSFFSLLIMARFIQGAGAAAFPALVMV-VVARYIPKENRGKAFGLIGSIVAMGEGVGPAI 158 Query: 174 AGFVAETAGWRAMFALAAASVAVIGAVAARGLPRFEPTTRLPYRA-------------LI 220 G +A W + + + +I L + E + + ++ Sbjct: 159 GGMIAHYIHWSYLLLIPMIT--IITVPFLMKLLKKEVRIKGHFDIKGIILMSVGIVFFML 216 Query: 221 GSLGALWR-----------------------------AHSALRRAALAQGLLAVGFSAFW 251 + + L G++ + F Sbjct: 217 FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFV 276 Query: 252 STLAVMLHGAPFHLGSAAAGAFGL--AGAAGALAAPVAGRLADHHGPERVTRIGIGIATL 309 S + M+ L +A G+ + + + + G L D GP V IG+ ++ Sbjct: 277 SMVPYMM-KDVHQLSTAEIGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSV 335 Query: 310 SFALMAAAPLMSPHAQLVLLAVATIGFDLGVQATLIAHQSIVYRIDPASRSRLNAVLFVG 369 SF + + +++ V +G + + + + ++L Sbjct: 336 SFLTASFLLETTSWFMTIII-VFVLGGLSFTK--TVISTIVSSSLKQQEAGAGMSLLNFT 392 Query: 370 MFIGMAAGAAIGSLLLA 386 F+ G AI LL+ Sbjct: 393 SFLSEGTGIAIVGGLLS 409
>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature. Length = 296 Score = 59.2 bits (143), Expect = 3e-12 Identities = 76/293 (25%), Positives = 119/293 (40%), Gaps = 26/293 (8%) Query: 1 MSARPFDPRRRSLLGGAAACALAGALPGGVLAQVAAAAPKRVIVIGGALAETAFAL---- 56 MS P RRR L A AL+ L A AA P R++ + E AL Sbjct: 1 MSGLPLISRRRLL----TAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVP 56 Query: 57 -GGAETPRYRLVGADTTCTYPDAAKRLPKVGYQRALSAEGLLSLRPDLVLASAEAGP-PT 114 G A+T YRL ++ P + VG + + E L ++P ++ SA GP P Sbjct: 57 YGVADTINYRLWVSE-----PPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPE 111 Query: 115 AIAQVKGAGVTVTTFDERHDVESVRAKITGVAQALDVRDAGTALLQRFDRDWQAARDAVA 174 +A++ G D + + R +T +A L+++ A L +++ ++ + Sbjct: 112 MLARI-APGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMK---- 166 Query: 175 ARVPGGAQPPRVLFVLNHTGAQALVAGQRTAADAMIRYAGARNAMQGFDHYKPLTT---E 231 R P +L L LV G + ++ G NA QG ++ T + Sbjct: 167 PRFVKRGARPLLLTTLIDP-RHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSID 225 Query: 232 ALAAAAPDVVLISDEGLAAVGGHAALLATPGFGATPAGRARRVVSLDALFLLG 284 LAA VL D + AL+ATP + A P RA R + A++ G Sbjct: 226 RLAAYKDVDVLCFDHDNSKD--MDALMATPLWQAMPFVRAGRFQRVPAVWFYG 276
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 96.0 bits (239), Expect = 2e-24 Identities = 86/390 (22%), Positives = 134/390 (34%), Gaps = 64/390 (16%) Query: 1 MNKKLLTIAALAATAGTAHAQSSVTLYGVIDAGISYVNHSKTANGGTGKLFKYDDGVAQG 60 M K L+ AL A A + VTLYG I AG+ + V G Sbjct: 1 MKKSLI---ALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 61 SRWGLRGTEDLGGGLKAIFVLENGFNSGNGTIGQGGAIFGRQAYVGLSQSQYGTVTFGRQ 120 S+ G +G EDLG GLKAI+ +E G RQ+++GL +G + GR Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVE----QKASIAGTDSGWGNRQSFIGLK-GGFGKLRVGRL 112 Query: 121 YSFSTDILGSNYSTGGNTVAGNYAYHVNDIDQLTSSRINNAVKFQSANYSGFTFGALYGF 180 S D N + G + +L S V++ S ++G + Y Sbjct: 113 NSVLKDTGDINPWDSKSDYLGVNKIAEPE-ARLIS------VRYDSPEFAGLSGSVQYAL 165 Query: 181 SNSTDFAGAPATTTGTTTTAGSSRAYSFGLNYANGPVSVGAAYTDIRYPSQSTPGFSTTI 240 +++ +S +Y G NY NG V R+ Sbjct: 166 NDNAGR--------------HNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQ-------- 203 Query: 241 ANLSTGNVRDLRTYGVGGRYVWGPATAWLLWTRTQFSTVSGAGGTFYNAYEAGAKYAF-- 298 N+ + + + Y A + + Q + + + + E A A+ Sbjct: 204 ---ENVNIEKYQIHRLVSGYDNDALYA-SVAVQQQDAKLVEENYSHNSQTEVAATLAYRF 259 Query: 299 ---TPALSGGLGYTYTNATQNGNSWHWNQVNGIADYALSKRTDVYGLVVYQQASGKGVQA 355 TP +S G+ + N N+ ++QV A+Y SKRT + Q Sbjct: 260 GNVTPRVSYAHGFKGSFDATNYNN-DYDQVVVGAEYDFSKRTSALVSAGWLQ-------- 310 Query: 356 QIGSSTSYFNTSGTGSKNQIAARIGIRHKF 385 G A +G+RHKF Sbjct: 311 ---------EGKGESKFVSTAGGVGLRHKF 331
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 46.8 bits (111), Expect = 8e-08 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 40 LTPIAHDLNATEGIAGQAISISGFFAVLASLFVAPLAGRFD-RRHVLMSMTVLMLISIVL 98 L IA+D N + + + L+ + +R +L + + S++ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 99 IAVSPNFAVLMIARAFLGLAVGGFWSLSTATVIQLVPAQRVPKALGTIYMGNAIATAFAA 158 F++L++AR G F +L V + +P + KA G I A+ Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 159 PIGAYVGGHLGWRFVFAALVPLVLVNLVWQAVSLP 193 IG + ++ W ++ L+P++ + V + L Sbjct: 157 AIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLL 189
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.1 bits (166), Expect = 3e-16 Identities = 31/159 (19%), Positives = 72/159 (45%), Gaps = 8/159 (5%) Query: 20 RRKYDPEQTKRNILDVATQEFSAMGLAGARVDAIAERTNTTKRMLYYYFESKEGLYEAVL 79 + K + ++T+++ILDVA + FS G++ + IA+ T+ +Y++F+ K L+ + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 80 EKVYGDIRALEQELHVGDM-EPREGMRRLVEFTFD--YHDKHRDFVRLV---SIENIHGA 133 E +I LE E +P +R ++ + ++ R + + E + Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 134 KYVEQLKSFKNRNVSIIKTLEELVERGAASGVFRKDIDA 172 V+Q + +N + +E+ ++ + + D+ Sbjct: 124 AVVQQAQ--RNLCLESYDRIEQTLKHCIEAKMLPADLMT 160
>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family signature. Length = 1024 Score = 128 bits (323), Expect = 8e-32 Identities = 83/295 (28%), Positives = 117/295 (39%), Gaps = 28/295 (9%) Query: 711 IMYGGAGNDRMWGGVGHDYMDGGDGADFVSGGDGND-TVFGGAGNDELHGDAGNDRLLGE 769 + G G+D+++ G + G G D V + + G+ R+LG Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEAGNYTVTRVLGG 672 Query: 770 AGNDRIFGEAGDDVLWGGDGDDV------LVGFTASN-DAKQTLSWGESDNDMLYGGNGN 822 +V G + N L E L G Sbjct: 673 DVKVLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEE----LIGTTRA 728 Query: 823 DALYGGLGNDYLDGGNDNDFLDGGDGDDRLFGGAGDDELNGGNGHDALSGETGNDKIFGG 882 D +G D G + +D ++G DG+DRL+G G+D L+GGNG D L G GNDK+ G Sbjct: 729 DKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGV 788 Query: 883 AGNDTIWGGDGDDILVGFTASNDAKQSLAAWETDDDTIYGGAGNDLILGGLGNDLLHGEA 942 AGN+ + GGDGDD S +D +YG G DL+ GG G+DLL G Sbjct: 789 AGNNYLNGGDGDDEFQVQGNSLAKNVLFGG--KGNDKLYGSEGADLLDGGEGDDLLKGGY 846 Query: 943 GNDE------------IQGGDGHDKLYGGDGN--DRLFGQVGNDILYGGAGDDLL 983 GND G DKL D + D F + GND++ ++L Sbjct: 847 GNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNVL 901 Score = 127 bits (320), Expect = 2e-31 Identities = 68/191 (35%), Positives = 92/191 (48%), Gaps = 7/191 (3%) Query: 609 LAGDGNDMMGGSSRNDNLWGGTGNDTLFGYDGDDRLYGEEGDDELNGGAGNDVLDGGIGN 668 + D GS D G G+D + G DG+DRLYG++G+D L+GG G+D L GG GN Sbjct: 723 IGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDGN 782 Query: 669 DKLFGHVGNDIMNGGDGDDIMLGFTASNDSKQTLAWGETDDDIMYGGAGNDRMWGGVGHD 728 DKL G GN+ +NGGDGDD S G +D +YG G D + GG G D Sbjct: 783 DKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLF--GGKGNDKLYGSEGADLLDGGEGDD 840 Query: 729 YMDGGDGADFV--SGGDGNDTVF-GGAGNDELH-GDAGNDRLLGE-AGNDRIFGEAGDDV 783 + GG G D G G+ + G D+L D + + GND I + +V Sbjct: 841 LLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKLSLADIDFRDVAFKREGNDLIMYKGEGNV 900 Query: 784 LWGGDGDDVLV 794 L G + + Sbjct: 901 LSIGHKNGITF 911 Score = 125 bits (315), Expect = 6e-31 Identities = 86/288 (29%), Positives = 117/288 (40%), Gaps = 48/288 (16%) Query: 756 ELHGDAGNDRLLGEAGNDRIFGEAGDDVLWGGDGDDVLVGFTASNDAKQTLSWGESDNDM 815 E H G+D++ AG+ I+ G DV++ D + + + G Sbjct: 613 ESHLGDGDDKVFLSAGSANIYAGKGHDVVYYDKTDTGYLTIDGTKATEA----GNYTVTR 668 Query: 816 LYGGNGNDALYGGLGNDYLDGGNDNDFLDGGDGDDRLFGGAGDDELNGGNGHDALSGETG 875 + GG+ L + + G + + G E + + L G T Sbjct: 669 VLGGDVK-VLQEVVKEQEVSVGKRTEKTQYRSYEFTHINGKNLTETDNLYSVEELIGTTR 727 Query: 876 NDKIFGGAGNDTIWGGDGDDILVGFTASNDAKQSLAAWETDDDTIYGGAGNDLILGGLGN 935 DK FG D G DGDD LI G GN Sbjct: 728 ADKFFGSKFTDIFHGADGDD--------------------------------LIEGNDGN 755 Query: 936 DLLHGEAGNDEIQGGDGHDKLYGGDGNDRLFGQVGNDILYGGAGDDLLVGFTGDNEAKRT 995 D L+G+ GND + GG+G D+LYGGDGND+L G GN+ L GG GDD Sbjct: 756 DRLYGDKGNDTLSGGNGDDQLYGGDGNDKLIGVAGNNYLNGGDGDDEF-----------Q 804 Query: 996 LGPGETDDDYLYGGEGNDTLLGGLGDDYLDGGAGADHMEGGEGNDTYI 1043 + + L+GG+GND L G G D LDGG G D ++GG GND Y Sbjct: 805 VQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYR 852 Score = 124 bits (313), Expect = 9e-31 Identities = 91/313 (29%), Positives = 133/313 (42%), Gaps = 42/313 (13%) Query: 639 DGDDRLYGEEGDDELNGGAGNDVLDGGIGNDKLFGHVGNDIMNGGDGDDIMLGFTASNDS 698 DGDD+++ G + G G+DV+ + G++ D + + + D Sbjct: 618 DGDDKVFLSAGSANIYAGKGHDVVYYDKTD---TGYLTIDGTKATEAGNYTVTRVLGGDV 674 Query: 699 K--------QTLAWGETDDDIMYGGAGNDRMWGGVGHDYMDGGDGADFVSGGDGNDTVFG 750 K Q ++ G+ + Y + G D + + G D FG Sbjct: 675 KVLQEVVKEQEVSVGKRTEKTQYRSYEFTHI-NGKNLTETDNLYSVEELIGTTRADKFFG 733 Query: 751 GAGNDELHGDAGNDRLLGEAGNDRIFGEAGDDVLWGGDGDDVLVGFTASNDAKQTLSWGE 810 D HG G+D + G GNDR++G+ G+D L GG+GD Sbjct: 734 SKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNGD-------------------- 773 Query: 811 SDNDMLYGGNGNDALYGGLGNDYLDGGNDND---FLDGGDGDDRLFGGAGDDELNGGNGH 867 D LYGG+GND L G GN+YL+GG+ +D + LFGG G+D+L G G Sbjct: 774 ---DQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGA 830 Query: 868 DALSGETGNDKIFGGAGNDT--IWGGDGDDILVGFTASNDAKQSLAAWETDDDTIYGGAG 925 D L G G+D + GG GND G G I+ D K SLA + D + G Sbjct: 831 DLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKED-KLSLADIDFRDVA-FKREG 888 Query: 926 NDLILGGLGNDLL 938 NDLI+ ++L Sbjct: 889 NDLIMYKGEGNVL 901 Score = 108 bits (271), Expect = 9e-26 Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 29/215 (13%) Query: 635 LFGYDGDDRLYGEEGDDELNGGAGNDVLDGGIGNDKLFGHVGNDIMNGGDGDDIMLGFTA 694 L G D+ +G + D +G G+D+++G GND+L+G GND ++GG+G Sbjct: 722 LIGTTRADKFFGSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNG--------- 772 Query: 695 SNDSKQTLAWGETDDDIMYGGAGNDRMWGGVGHDYMDGGDGADFVSGGDGNDTVFGGAGN 754 DD +YGG GND++ G G++Y++GGDG D Sbjct: 773 --------------DDQLYGGDGNDKLIGVAGNNYLNGGDGDDEFQVQG------NSLAK 812 Query: 755 DELHGDAGNDRLLGEAGNDRIFGEAGDDVLWGGDGDDVLVGFTASNDAKQTLSWGESDND 814 + L G GND+L G G D + G GDD+L GG G+D+ + G+ D Sbjct: 813 NVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDGGKEDKL 872 Query: 815 MLYGGNGNDALYGGLGNDYLDGGNDNDFLDGGDGD 849 L + D + GND + + + L G + Sbjct: 873 SLADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKN 907 Score = 85.0 bits (210), Expect = 1e-18 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 16/136 (11%) Query: 1377 GNALDNTIIGNRGNNVLDGGAGNDILIGGLGNDTYRFGRGSGCDTIRDDDETLGNSDVIS 1436 G ++ + G+ G ++LDGG G+D+L GG GND YR+ G G I DD G D +S Sbjct: 817 GGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLSGYGHHIIDDDG---GKEDKLS 873 Query: 1437 IGAGVSADQLWFRHVGNDL-------EISILGTGDTATVRDWYL-----GSRYQIEQIRV 1484 + A + + F+ GNDL + +G + T R+W+ S ++IEQI Sbjct: 874 L-ADIDFRDVAFKREGNDLIMYKGEGNVLSIGHKNGITFRNWFEKESGDISNHEIEQIFD 932 Query: 1485 DDGRTLVNADVEKLVQ 1500 GR + ++K ++ Sbjct: 933 KSGRIITPDSLKKALE 948 Score = 53.0 bits (127), Expect = 9e-09 Identities = 57/180 (31%), Positives = 76/180 (42%), Gaps = 36/180 (20%) Query: 550 NDKIYWINSRDFIMFGPTQIKVSPSNRSYLIGTDGNDVFDANYYAAYGHWIDSNLLVNFL 609 ND++Y D + G + L G DGND G+ N L Sbjct: 755 NDRLYGDKGNDTLSGG--------NGDDQLYGGDGNDKL----IGVAGN----NYLN--- 795 Query: 610 AGDGNDMM---GGSSRNDNLWGGTGNDTLFGYDGDDRLYGEEGDDELNGGAGND--VLDG 664 GDG+D G S + L+GG GND L+G +G D L G EGDD L GG GND Sbjct: 796 GGDGDDEFQVQGNSLAKNVLFGGKGNDKLYGSEGADLLDGGEGDDLLKGGYGNDIYRYLS 855 Query: 665 GIGNDKLFGHVGNDIMNGGDGDDIMLGFTASNDSKQTLAWGETDDD-IMYGGAGNDRMWG 723 G G+ + GG D + L ++ + +A+ +D IMY G GN G Sbjct: 856 GYGHHIIDDD-------GGKEDKLSL----ADIDFRDVAFKREGNDLIMYKGEGNVLSIG 904 Score = 36.5 bits (84), Expect = 0.001 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 1381 DNTIIGNRGNNVLDGGAGNDILIGGLGNDTYRFGRGSGCDTIRDDDETLGNSDVISIGAG 1440 D+ I GN GN+ L G GND L GG G+D G G +D+ +G + + G Sbjct: 746 DDLIEGNDGNDRLYGDKGNDTLSGGNGDDQLYGGDG--------NDKLIGVAGNNYLNGG 797 Query: 1441 VSADQLWFRHVGNDLEISILGTGD 1464 D+ + + G G+ Sbjct: 798 DGDDEFQVQGNSLAKNVLFGGKGN 821 Score = 31.5 bits (71), Expect = 0.036 Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 1377 GNALDNTIIGNRGNNVLDGGAGNDILIGGLGNDTYRFGRG 1416 G+ + G G+++++G GND L G GNDT G G Sbjct: 733 GSKFTDIFHGADGDDLIEGNDGNDRLYGDKGNDTLSGGNG 772
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 113 bits (284), Expect = 4e-32 Identities = 55/145 (37%), Positives = 75/145 (51%), Gaps = 11/145 (7%) Query: 87 FQCGAAPAEAASAATPAPAAVIERVNLSGDALFATDHATLAPTARESLDRLLSE--RADR 144 F G A A A PAP + L D LF + ATL P + +LD+L S+ D Sbjct: 191 FGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDP 250 Query: 145 TYSQVTVTGFTDSVGSDDYNLALSKRRAESVAAYLKAHGLKTDSITVSGRGKADPVASN- 203 V V G+TD +GSD YN LS+RRA+SV YL + G+ D I+ G G+++PV N Sbjct: 251 KDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNT 310 Query: 204 --------ATPEGRASNRRVEIRLQ 220 A + A +RRVEI ++ Sbjct: 311 CDNVKQRAALIDCLAPDRRVEIEVK 335
>OMADHESIN#Yersinia outer membrane adhesin signature. Length = 455 Score = 36.4 bits (83), Expect = 0.001 Identities = 40/131 (30%), Positives = 68/131 (51%) Query: 2331 GQNASATGGKAVSIGSGNTASGDGAVAIGDPNVATGTGAVAMGANNTATGDGAVSLGNQN 2390 G NASA G +++IG+ A+ AVA+G ++ATG +VA+G + A GD AV+ G + Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 2391 TATGASALALGSANQATADNTIALGSQATASATGAQAYGSAAKATAADALAFGTNAQANV 2450 TA A+ + + S+A A + A + S A ++A G ++ + Sbjct: 122 TAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTDR 181 Query: 2451 ANSIALGANSV 2461 NS+++G S+ Sbjct: 182 ENSVSIGHESL 192 Score = 35.3 bits (80), Expect = 0.004 Identities = 64/294 (21%), Positives = 109/294 (37%) Query: 2301 AAGVNASAAGASSVAVGDGSNAQTAGAVAIGQNASATGGKAVSIGSGNTASGDGAVAIGD 2360 A G+NASA G S+A+G + A AVA+G + ATG +V+IG + A GD AV G Sbjct: 60 AGGLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGA 119 Query: 2361 PNVATGTGAVAMGANNTATGDGAVSLGNQNTATGASALALGSANQATADNTIALGSQATA 2420 + A G +T+ AV ++ A + A+ S A +IA+G ++ Sbjct: 120 ASTAQKDGVAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKT 179 Query: 2421 SATGAQAYGSAAKATAADALAFGTNAQANVANSIALGANSVTAAAVGTSSATIGGVTYPF 2480 + + G + LA GT V + T SA + + Sbjct: 180 DRENSVSIGHESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKRSAELLANANAY 239 Query: 2481 AGGSPVGVVSVGAPGQERQITNVAAGRISATSTDAINGSQLNATNNAINTLSTSTASNVA 2540 A V+ + + + + + + ++ +T + Sbjct: 240 ADNKSSSVLGIANNYTDSKSAETLENARKEAFAQSKDVLNMAKAHSNSVARTTLETAEEH 299 Query: 2541 SLSTGINSLSTGLSTTNSNVASLSTSTSTAINSLSTGLSTTNNNVNSLSTSTST 2594 + S +L T N A S + +S S+ T N+ ++ S ST Sbjct: 300 ANSVARTTLETAEEHANKKSAEALASANVYADSKSSHTLKTANSYTDVTVSNST 353 Score = 35.3 bits (80), Expect = 0.004 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Query: 244 GATGRNVAIGSSGTTANGATAAGGAVAIGRGQVATGDGAVAIGDPNSATGTGALAIGAND 303 G I S A A G AVA+G G +ATG +VAIG + A G A+ GA Sbjct: 62 GLNASAKGIHSIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGAAS 121 Query: 304 TSNGSGAIALGNSNSASGTGSVALGNSSTATNSAVAIGSSASATGTNG-AIAIGNAATAN 362 T+ G +A+G S S TG NS ++VAIG S+ +G +IAIG+ + + Sbjct: 122 TAQKDG-VAIGARASTSDTGVAVGFNSKADAKNSVAIGHSSHVAANHGYSIAIGDRSKTD 180 Query: 363 GTGAIALGN 371 ++++G+ Sbjct: 181 RENSVSIGH 189
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 30.2 bits (68), Expect = 0.016 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 11/115 (9%) Query: 75 SRRPRARRVQIFSPDALEQANAALDGADASQQQCARPLLEKAGSNDGCRKLPDIQKALKR 134 RP + + + + A A + A L + G R L + ++ + Sbjct: 71 KARPDLPVLVMSAQNTFMTAIKASE-KGAYDYLPKPFDLTELIGIIG-RALAEPKRRPSK 128 Query: 135 LDVARGSFANL---SEPIGKLMVDLVLASAVRSREFRVRPILLMGEPGVGKTHFA 186 L+ L S + ++ L +++ GE G GK A Sbjct: 129 LEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL------TLMITGESGTGKELVA 177
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 72.8 bits (178), Expect = 2e-17 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 5/190 (2%) Query: 3 MTGNTIFITGGTSGIGRALAEQFHALGNKVIIAGRRKALLDEVTTANPGM----EGVALD 58 + G FITG GIG A+A + G + L++V ++ E D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 59 ISDAADIDRVAAQLIRDYPSLNVLINNAGIMPFDDPSGRIDDSVSRQILDTNLLGPIRLT 118 + D+A ID + A++ R+ +++L+N AG++ + D N G + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 119 SALIEHLKAQPRATIIHNTSVLAYVPIATNAVYSASKAALHSYALSQRFMLKGTSVSVQE 178 ++ +++ + +I+ S A VP + A Y++SKAA + L ++ Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 179 IAPPWVDTDL 188 ++P +TD+ Sbjct: 185 VSPGSTETDM 194
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 58.0 bits (140), Expect = 3e-11 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 5/151 (3%) Query: 37 LPVMAKDFGLPVPTVAVLVIVFTLVLALSSPISTVATGRMARKWVLLAAMSLFAIGNVTA 96 LP +A DF P + + F L ++ + + + ++ K +LL + + G+V Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 97 AVSASFA-LLIGARVLMAIAAGLYVPAANGLAGVIVPPSMRGRALAIVSAGQTLAIALGL 155 V SF LLI AR + A + + +P RG+A ++ + + +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 156 PLGGMIGHAFGWRATFLLVGAMSVIAIAGIF 186 +GGMI H W L+ +I I + Sbjct: 157 AIGGMIAHYIHWSYLLLI----PMITIITVP 183
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 76.0 bits (187), Expect = 2e-19 Identities = 21/101 (20%), Positives = 43/101 (42%) Query: 9 IIDDDQSVRRATGSLVRSLGWEVRTYESGEEFLSAERIADVACIISDVQMPGISGLEMYE 68 + DDD ++R + G++VR + D +++DV MP + ++ Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 69 MLLERGVAPPVIFITSFPSEATHRQAMKLGAICVFSKPVDP 109 + + PV+ +++ + T +A + GA KP D Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDL 108
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 99.5 bits (248), Expect = 1e-26 Identities = 32/143 (22%), Positives = 62/143 (43%) Query: 16 VVDDDDSMRSALGMLLRSVGLRVELFSSAQEFLAFDKPDVSSCLILDVRLKGQSGLVLQE 75 V DDD ++R+ L L G V + S+A + ++ DV + ++ L Sbjct: 8 VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDLLP 67 Query: 76 QIVAGDMGLPIIFITAHGDVAMSVKAMKNGALDFLSKPFRDQEMLDAVEGALLKHEARRR 135 +I LP++ ++A ++KA + GA D+L KPF E++ + AL + + R Sbjct: 68 RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKRRPS 127 Query: 136 TDGRVAEVRRRYESLTPREREVM 158 ++ + +E+ Sbjct: 128 KLEDDSQDGMPLVGRSAAMQEIY 150
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.3 bits (89), Expect = 5e-05 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 1/156 (0%) Query: 252 IFSSKIFWIFGIIYFLDVFGIYGYTLWAPTIIKSLGVERNSLIGLLAALPNAVAVIVM-I 310 + + F I + + + G+ P ++K + + IG + P ++VI+ Sbjct: 252 LGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGY 311 Query: 311 IAGRKADSRRERRLLVAALFLMAAAGLTLALVWHGTLWLSIAALCIANAGLLSIPPIFWG 370 I G D R +L + ++ + LT + + T W + GL + Sbjct: 312 IGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTVIST 371 Query: 371 MPTAVLSPRNAASGIAWISAIGNIGGFFGPYVVGLL 406 + ++ L + A +G++ ++ + G +VG L Sbjct: 372 IVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407 Score = 35.2 bits (81), Expect = 5e-04 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 2/161 (1%) Query: 246 SINQNNIFSSKIFWIFGIIYFLDVFGIYGYTLWAPTIIKSLGVERNSLIGLLAALPNAVA 305 S +Q+N+ ++I I+ F V + P I S + A + Sbjct: 4 SYSQSNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFS 63 Query: 306 VIVMIIAGRKADSRRERRLLVAALFLMAAAGLTLALVWHGTLWLSIAALCIANAGLLSIP 365 + + G+ +D +RLL+ + + + + V H L I A I AG + P Sbjct: 64 IGTAVY-GKLSDQLGIKRLLLFGIIINCFGSV-IGFVGHSFFSLLIMARFIQGAGAAAFP 121 Query: 366 PIFWGMPTAVLSPRNAASGIAWISAIGNIGGFFGPYVVGLL 406 + + + N I +I +G GP + G++ Sbjct: 122 ALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMI 162
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 32.7 bits (74), Expect = 0.003 Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 200 IHDAPRVAMREDEDVSREIQQALEADGIKLELQSRIAN 237 + +A R ++R D D SRE ++ LEA+ KLE Q++I+ Sbjct: 306 VLNANRQSLRRDLDASREAKKQLEAEHQKLEEQNKISE 343
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 104 bits (261), Expect = 4e-26 Identities = 87/421 (20%), Positives = 169/421 (40%), Gaps = 21/421 (4%) Query: 32 IRLALLTFALSLATFIEVLDSTVTNVAVPAISGSLGVSNSQGTWVISSYSVAAAIAVPLT 91 +R + L + +F VL+ V NV++P I+ + WV +++ + +I + Sbjct: 10 LRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVY 69 Query: 92 GWLARRVGELRLFVGAVLLFTLTSLLCGLARD-LHVLVICRALQGLCSGPMVPLSQTILL 150 G L+ ++G RL + +++ S++ + +L++ R +QG + L ++ Sbjct: 70 GKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVA 129 Query: 151 RTFPPDKRTIALALWAMTVLLAPIFGPVVGGWIVDNFSWPWIFLINLPIGLFSFAVCTAM 210 R P + R A L V + GP +GG I W ++ LI + I + + + Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKL 188 Query: 211 LRPDAQRGAAGPIDVPGIVLLVIGVGSLQAMLDLGHDRGWFDSPLIVTLAVVAALAIVSL 270 L+ + + G D+ GI+L+ +G+ F + ++ +V+ L+ + Sbjct: 189 LKKEVRI--KGHFDIKGIILMSVGIVFFM----------LFTTSYSISFLIVSVLSFLIF 236 Query: 271 LIWEAGEAHPVVDLSLFRDRTFSFCVLIISLGMMSFSVVGVVFPLWMQAVMGYNAFHAGL 330 + P VD L ++ F VL + + + + P M+ V + G Sbjct: 237 VKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGS 296 Query: 331 ATASLGVLA-LVFSILVGLHAHRFDARVLATFGFLVFAAVLAWDAQFTLKMTFAQIAAPG 389 G ++ ++F + G+ R + G + F +V A F L+ T + Sbjct: 297 VIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIG-VTFLSVSFLTASFLLETTSWFMTIII 355 Query: 390 LIQGIGLPCFFIPLTAATLSRIPDDRLAAASSLSNFLRTLSAAFGTA-----MSVTLWDN 444 + GL ++ S + A SL NF LS G A +S+ L D Sbjct: 356 VFVLGGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLDQ 415 Query: 445 R 445 R Sbjct: 416 R 416
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 72.6 bits (178), Expect = 5e-16 Identities = 45/273 (16%), Positives = 80/273 (29%), Gaps = 32/273 (11%) Query: 107 AFAQAKAQLAQAVRQVANARISNTMYVEAVNARRADLSLAQRALAA-RSGASVEIVAPEE 165 F+ + Q Q + R + +N + + L S + +A Sbjct: 194 QFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHA 253 Query: 166 LARARAAVAGAQANLAAAQAQLDAARA--LGSKLPVDESPAVVQAAAQFKLAYR------ 217 + A L ++QL+ + L +K + + KL Sbjct: 254 VLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGL 313 Query: 218 ----------NLKRTTIVAPVDGTIGQRSVQ-VGQQVGPGVPLMSIVQLN-RLWVEANFK 265 + + I APV + Q V G V LM IV + L V A + Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQ 373 Query: 266 EGQIRHMRVGQPVEVVSDLYGSRIA--YRGRVQGFSAGTGSAFSMLPSQNAAGNWIKVVQ 323 I + VGQ + + + G+V+ + G V+ Sbjct: 374 NKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDA-------IEDQRLGLVFNVII 426 Query: 324 RVPVVIALDPRDVAAHPLRVGLSMRATVDTHDR 356 + PL G+++ A + T R Sbjct: 427 SIEENCLS--TGNKNIPLSSGMAVTAEIKTGMR 457 Score = 61.0 bits (148), Expect = 3e-12 Identities = 30/189 (15%), Positives = 67/189 (35%), Gaps = 8/189 (4%) Query: 12 PAALNDPALDARRATRRKRFTVFFAI-VLLAAIAWIAYWLLSDRYYEDTDDAYVAGSIVQ 70 PA L L +RR R +F + L+ A + + +G + Sbjct: 43 PAHL---ELIETPVSRRPRLVAYFIMGFLVIAFIL-SVLGQVEIVATANGKLTHSGRSKE 98 Query: 71 VAAQIPGAVTDVVVADTQAVRAGQPLVRLDDTEASVAFAQAKAQLAQAVRQVANARISNT 130 + V +++V + ++VR G L++L A + ++ L QA + +I + Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQIL-S 157 Query: 131 MYVEAVNARRADLS--LAQRALAARSGASVEIVAPEELARARAAVAGAQANLAAAQAQLD 188 +E L + ++ + + E+ + + + NL +A+ Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 189 AARALGSKL 197 A ++ Sbjct: 218 TVLARINRY 226
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 84.6 bits (209), Expect = 4e-22 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 11/116 (9%) Query: 65 ILFDFDRYNLKPDVRRIVERIGRTLRSAGING--VRVYGYSDDEGTAAYDAELSRRRAEV 122 +LF+F++ LKP+ + ++++ L + V V GY+D G+ AY+ LS RRA+ Sbjct: 221 VLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQS 280 Query: 123 VAVELVDVGLDAKRIAIVGKGKLDPVGDN---------RTPAGRAQNRRAAIVVSP 169 V L+ G+ A +I+ G G+ +PV N A +RR I V Sbjct: 281 VVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKG 336
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 86.3 bits (213), Expect = 3e-22 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 10/180 (5%) Query: 2 KTVLITGCSSGFGLEIARHFLARDWQVVATMRKPN-DDVLPPSERLRV-----LPLDVTN 55 K ITG + G G +AR ++ + A P + + S + P DV + Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 56 ADSIRAAID----AAGPIDVLVNNAGFGAAAPAELMPLDTVRALFDTNTIGTIAVTQAVL 111 + +I GPID+LVN AG + + A F N+ G +++V Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 112 PQFRARGAGVVVNVTSSVTLKALPLVSAYRASKAAVNAYTESMAAELEPFGVRAHLVLPG 171 R +G +V V S+ ++AY +SKAA +T+ + EL + +R ++V PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 55.8 bits (134), Expect = 5e-10 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 31 IAELLDESVDEIASLDDDEDLLSCGLDSIRLMYLQTRVNRLGHALTFDALARTPTLGAWT 90 IAELL E+ ++I D EDLL GLDS+R+M L + R G +TF LA PT+ W Sbjct: 239 IAELLQETPEDI---TDQEDLLDRGLDSVRIMTLVEQWRREGAEVTFVELAERPTIEEWQ 295 Query: 91 TLL 93 LL Sbjct: 296 KLL 298
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 51.2 bits (122), Expect = 5e-10 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 34 IAPSKTALLVMHYQTDILGLFPSVAP---ELLANTRRLCDAARAAGVGVWFANLRFSPG- 89 P++ LL+ Q + F + A EL AN R+L + G+ V + PG Sbjct: 26 PDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTA---QPGS 82 Query: 90 -YPEVSPLNKNGQGIKQLGLFIDDAPCPELAKRPDEPLIVAHRASVFFGTDLQARLIAQG 148 P+ L + G ++ ELA D+ ++ R S F T+L + +G Sbjct: 83 QNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFKRTNLLEMMRKEG 142 Query: 149 VDTLIMVGI-ASTGVMLSSI 167 D LI+ GI A G ++++ Sbjct: 143 RDQLIITGIYAHIGCLVTAC 162
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 63.1 bits (153), Expect = 1e-13 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 19/207 (9%) Query: 9 GRRIVITGANSGTGKEATRRLVAAGADVIMAVRSESKGDAARRDIRKEFPGTSIEVRTLD 68 G+ ITGA G G+ R L + GA + + K + ++ E E D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAE--ARHAEAFPAD 65 Query: 69 LSSLASVRNFGRQLLEEGRPLDVLVNNAGIMMP-PTRVLSSDGFELQLATNFLGHFALTN 127 + A++ ++ E P+D+LVN AG++ P LS + +E + N G F + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 128 LLLPLLLEAKSPRVATMTSSAAMGATINFDDLQGERSYKPMTAYAQSKLACLLLANRLA- 186 + +++ +S + T+ S+ A + M AYA SK A ++ L Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTS------------MAAYASSKAAAVMFTKCLGL 173 Query: 187 EIARERGWPLLSTSAHPGHTRTNLQTS 213 E+A + + PG T T++Q S Sbjct: 174 ELA---EYNIRCNIVSPGSTETDMQWS 197
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 69.9 bits (171), Expect = 4e-16 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 4 RILLVEDDTRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSIRPDLVILDVNLPGKDGFE 63 IL+ +DD + T++ L + Y+V + I + DLV+ DV +P ++ F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 64 ICREARKQYDGV-IIMVTARDEPFDELLGLEFGADDYVHKPVEPRILLARIKAQLRRAPA 122 + +K + +++++A++ + E GA DY+ KP + L+ I L Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 123 RAAE 126 R ++ Sbjct: 125 RPSK 128
>PF06580#Sensor histidine kinase Length = 349 Score = 31.4 bits (71), Expect = 0.005 Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 35/184 (19%) Query: 201 DSIAQDVTELEELIDMSLTYARLEYSSLQSNLEMTAPVAWFEHQVNDAQLLYPDRAIESR 260 + +T L EL+ SL Y+ SL L + + + A + + DR ++ Sbjct: 191 TKAREMLTSLSELMRYSLRYSNARQVSLADELTVV------DSYLQLASIQFEDR-LQFE 243 Query: 261 IEIGADLRVKMDRRLMSYAMRNLLRNASKYA------KSRIVVGISLVHGNIGIFVEDDG 314 +I + D ++ ++ L+ N K+ +I++ + +G + + VE+ G Sbjct: 244 NQINPAIM---DVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTG 300 Query: 315 PGVPESERERIFDAFVRLDRRTGGYGLGLSITR---QVLHAHNGRIAVVDPVELGGARFE 371 ++ +E G GL R Q+L+ +I + + + G Sbjct: 301 SLALKNTKE--------------STGTGLQNVRERLQMLYGTEAQIKLSE--KQGKVNAM 344 Query: 372 ISWP 375 + P Sbjct: 345 VLIP 348
>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein signature. Length = 347 Score = 354 bits (910), Expect = e-124 Identities = 166/340 (48%), Positives = 226/340 (66%), Gaps = 2/340 (0%) Query: 1 MSTPLFGKLFAQPVAIDPGTASTRIYTHERGVVLNQPSVVCFRKGGASDARPTLEAVGEL 60 M G +F+ ++ID GTA+T IY +G+VLN+PSVV R+ A + AVG Sbjct: 1 MLKKFRG-MFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDRAGSPKSVA-AVGHD 58 Query: 61 AKALLGREPGHLEAVRPMRHGVIADAHAAEQMIRSFIDMSRTRSRFGRRVEVTLCVPSDA 120 AK +LGR PG++ A+RPM+ GVIAD E+M++ FI + S V +CVP A Sbjct: 59 AKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGA 118 Query: 121 TAVERRAIREAAFAAGVSEVELIEESLAAGLGAGLPVTEPVGSMVIDIGGGTTEVAVIAL 180 T VERRAIRE+A AG EV LIEE +AA +GAGLPV+E GSMV+DIGGGTTEVAVI+L Sbjct: 119 TQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISL 178 Query: 181 GGIVYREAIRVGGSQFDAAIVNHVRNLYGVLLGEQTAEHVKKAIGSATSAVPRTSTRAVG 240 G+VY ++R+GG +FD AI+N+VR YG L+GE TAE +K IGSA G Sbjct: 179 NGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRG 238 Query: 241 RSIGDGLPRSVELSNHDVADALAAPLKQVIGAVKSVLENAPAELVTDIANRGVVLTGGGA 300 R++ +G+PR L+++++ +AL PL ++ AV LE P EL +DI+ RG+VLTGGGA Sbjct: 239 RNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGA 298 Query: 301 LLADLERLLYDETGLVARIADEPATCAVRGAGEAMGRLAM 340 LL +L+RLL +ETG+ +A++P TC RG G+A+ + M Sbjct: 299 LLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALEMIDM 338
>OMPADOMAIN#OMPA domain signature. Length = 346 Score = 30.7 bits (69), Expect = 0.004 Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 103 GLNEATAMRDYLVARGVPADRIAV 126 A ++ DYL+++G+PAD+I+ Sbjct: 274 SERRAQSVVDYLISKGIPADKISA 297
>INTIMIN#Intimin signature. Length = 939 Score = 43.5 bits (102), Expect = 1e-05 Identities = 66/279 (23%), Positives = 96/279 (34%), Gaps = 22/279 (7%) Query: 1667 STGAVNLAGTGATFDVSGATGTQTVGALSGAAGTNVNLGANALALNGSGSSTFGGTIGGA 1726 T A+ T V+ A + +SG A L AN+ NGSG +T Sbjct: 574 GTEAITYTATVKKNGVAQANVPVSFNIVSGTA----VLSANSANTNGSGKATVTLKSDKP 629 Query: 1727 GGVTVASGTQ----------VLTGDNTYTGGTTIAAGGTLQLGNGGTSGSVAGNVVDNGA 1776 G V V++ T V+ D T T I A T + NG + + V+ Sbjct: 630 GQVVVSAKTAEMTSALNANAVIFVDQTKASITEIKADKTTAVANGQDAITYTVKVMKGDK 689 Query: 1777 LIVNQSGNVTIASVLSGTGSLTQAGSGRLTLTGTSTLSGPTTVGAGTLAVNGSLGQSTVT 1836 + NQ T + +G +T TST G + V A V + V Sbjct: 690 PVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVKAPEVE 749 Query: 1837 VQNGATLTGTG-TIGGLVVQGGATAAATQPGAALNV--GGNVTFQPGSTFQVAATPQQSG 1893 T+ I G V+G Q G GGN + S A+ Sbjct: 750 FFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASVD--- 806 Query: 1894 SLAASGTATLNGGTVQVLANQSGYQPSTTYTILSASSGV 1932 A+SG TL ++ S + TYTI + +S + Sbjct: 807 --ASSGQVTLKEKGTTTISVISSDNQTATYTIATPNSLI 843
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 34.1 bits (78), Expect = 7e-05 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 61 GWLHVDLLVVPESARGQGAGTRIMDLAEREAVARGCHSAWLDTFDFQ--ARPFYEKRGY 117 G+ ++ + V + R +G GT ++ A A L+T D A FY K + Sbjct: 88 GYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 83.9 bits (207), Expect = 3e-20 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 10/184 (5%) Query: 20 ALLAGLLVLLAGCQKELYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVA 79 ++A +L + L+S LS++D +VA L I N + + V Sbjct: 37 IVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGA--------IEVP 88 Query: 80 DGDMQAALTVLQANGLPKPSYASLGELFQKQGLVSTPAEERVRYLYGVSQDLSRTLQDIE 139 + L GLPK EL ++ + E+V Y + +L+RT++ + Sbjct: 89 ADKVHELRLRLAQQGLPKGGAVGF-ELLDQEKFGISQFSEQVNYQRALEGELARTIETLG 147 Query: 140 GVVVARVQVVIPENDPLADKIKPSSAAVYIRYRPGVDL-RAMAPMVKDLVAHSIEGLQYD 198 V ARV + +P+ + K SA+V + PG L V LV+ ++ GL Sbjct: 148 PVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPG 207 Query: 199 NVSL 202 NV+L Sbjct: 208 NVTL 211
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 134 bits (339), Expect = 3e-40 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 3/248 (1%) Query: 15 LRPLLYVMPRLLPIMFVVPVFNEQIITGLVRNGIAVVIAAFVAPTIDAAQVAALPFLMWC 74 L + + R+L ++ P+ +E+ + V+ G+A++I +AP++ A V F Sbjct: 13 LNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF-AL 71 Query: 75 LLVAKEAMVGMLLAGAFSAVLFAIQGVGYLIDFQTGSGSAAFFDPMGGHEGGPTSGFLNF 134 L ++ ++G+ L A++ G +I Q G A F DP + ++ Sbjct: 72 WLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIMDM 131 Query: 135 VAIALFVTAGGLQVLVQLFAQSYAWWPIGSLGPDFSSMLQTFIVRQTDTIFEWMVKLAAP 194 +A+ LF+T G L+ L ++ PIG +S + + IF + LA P Sbjct: 132 LALLLFLTFNGHLWLISLLVDTFHTLPIGG--EPLNSNAFLALTKAGSLIFLNGLMLALP 189 Query: 195 VTIVLVLVELGIGLVGRAVPQLNIFVFSQPLKSALAVLMMILFLPVVYASLHSLLSPDSG 254 + +L+ + L +GL+ R PQL+IFV PL + + +M +P++ L S Sbjct: 190 LITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEIFN 249 Query: 255 LMALLRAL 262 L+A + + Sbjct: 250 LLADIISE 257
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 244 bits (625), Expect = 6e-81 Identities = 93/339 (27%), Positives = 174/339 (51%), Gaps = 3/339 (0%) Query: 2 AEKDQKPTAKRLREAREKGDVPKSAETVSSAFFVGVCVALAVGIGALFARVQALFRLVFD 61 EK ++PT K++R+AR+KG V KS E VS+A V + L F L + + Sbjct: 3 GEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAE 62 Query: 62 AVGAADPSARLAALIDGAARDWATLSAQIVAAGLQAGLLAGFVQVGGVMAWSRLVPQLSR 121 S L+ ++D ++ L ++ + + VQ G +++ + P + + Sbjct: 63 QSYL-PFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKK 121 Query: 122 LNPAEGMKNLWSLRNLVNLAKMLMKTALLVATLGWLIVESLDPSVQSGFTRPASILALIV 181 +NP EG K ++S+++LV K ++K LL + +I +L +Q I L+ Sbjct: 122 INPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECITPLLG 181 Query: 182 KLLMLLFGWAALIYIVMALIDIVHQRHEFNQKMKMSIDEVRREHKEDEGDPHIQAKRRQL 241 ++L L + ++V+++ D + +++ +++KMS DE++RE+KE EG P I++KRRQ Sbjct: 182 QILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQF 241 Query: 242 AREAQFASLPDRIGYASVVVYSP-RVAVALYYG-GMGSLPWVLARGEGDAAERIVRLARD 299 +E Q ++ + + +SVVV +P +A+ + Y G LP V + + + ++A + Sbjct: 242 HQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEE 301 Query: 300 ALRPTLANVGLAQALYETTPENGTIQPQHFRAVAQLLKW 338 P L + LA+ALY + I + A A++L+W Sbjct: 302 EGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRW 340
>PF03544#Gram-negative bacterial tonB protein Length = 243 Score = 36.9 bits (85), Expect = 0.001 Identities = 13/67 (19%), Positives = 20/67 (29%) Query: 23 PVVAPPPPPPPPPKKDDPAAGPANPTAAPPIPVTASLATDPSKPTNAEIQSATSLIQSMA 82 PVV P P P PK P+ + + + P +AT+ Sbjct: 91 PVVIEKPKPKPKPKPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPV 150 Query: 83 AQYTAPP 89 + P Sbjct: 151 TSVASGP 157
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 46.2 bits (109), Expect = 3e-07 Identities = 47/263 (17%), Positives = 73/263 (27%), Gaps = 28/263 (10%) Query: 264 ASMRAAPVSVPVPVPALAPVAAAPAVATPAVAAAA--------PAVAVPTVAAAVPAAAA 315 R V A P+V + A PA A P+ A + Sbjct: 985 VEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENS 1044 Query: 316 PAAAAAPAVAAAPAASVVPAAAMAAVPAAA-VIAAPAVADKAAPAPAAPVADTKAAEPVQ 374 + A A A + V A + A T + + Sbjct: 1045 KQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETK--E 1102 Query: 375 PVADKAPEPAPAVADKTPEPAPAVADKAP-----EPAQPVADKAPEPMPA-------ATD 422 + E A +KT E + +P E QP A+ A E P + Sbjct: 1103 TATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQT 1162 Query: 423 TTQAAGEPVAEPMPAAAVVAAPAADAKAAEPAPQATAEAPAPAAPQPAVAAAPADMPAAD 482 T A E A+ + + + E PA QP V + ++ P Sbjct: 1163 NTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNR 1222 Query: 483 AK-----APDAVESAGTAAAQAA 500 + P VE A T++ + Sbjct: 1223 HRRSVRSVPHNVEPATTSSNDRS 1245 Score = 43.1 bits (101), Expect = 3e-06 Identities = 42/251 (16%), Positives = 67/251 (26%), Gaps = 16/251 (6%) Query: 305 TVAAAVPAAAAPAAAAAPAVAAAPAASVVPAAAMAAVPAAAVIAAPAVADKAAP---APA 361 TV A P+V + A PA A + + Sbjct: 991 TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKT 1050 Query: 362 APVADTKAAEPVQPVADKAPEPAPAVADKTPEPAPAVADKAPEPAQPVADKAPEPMPAA- 420 + A E + A E V T A + + Q K + Sbjct: 1051 VEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110 Query: 421 -----TDTTQAAGEPVAE--PMPAAAVVAAPAADAKAAEPAPQATAEAPAPAAPQPAVAA 473 T+ TQ + ++ P + P A+ A E P + P A Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEP-ARENDPTVNIKEPQSQTNTTADTE 1169 Query: 474 APADMPAADAKAPDAVESAGTAAAQAAGMPALTDPAQALPPATVDQQAAP----AAPVAP 529 PA +++ + P + P T PA P + P V Sbjct: 1170 QPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRS 1229 Query: 530 APTVISTSTSS 540 P + +T+S Sbjct: 1230 VPHNVEPATTS 1240 Score = 32.3 bits (73), Expect = 0.006 Identities = 24/186 (12%), Positives = 48/186 (25%), Gaps = 20/186 (10%) Query: 313 AAAPAAAAAPAVAAAPAASVVPAAAMAAVPAAAVIAAPAVADKAAPAPAAPVADTKAAEP 372 P + + + +V P A A V + A A ++ Sbjct: 1120 QEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNV 1179 Query: 373 VQPVADKAPEPAPAVADKTPEPAPAVADKAPEPAQPVADKAPEPMPAATDTTQAAGEPVA 432 QPV + + + P QP T ++++ +P Sbjct: 1180 EQPVTESTTV------NTGNSVVENPENTTPATTQP------------TVNSESSNKP-- 1219 Query: 433 EPMPAAAVVAAPAADAKAAEPAPQATAEAPAPAAPQPAVAAAPADMPAADAKAPDAVESA 492 + +V + P A + + A A A A + ++ Sbjct: 1220 KNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGKAV 1279 Query: 493 GTAAAQ 498 +Q Sbjct: 1280 SQHISQ 1285
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 360 bits (926), Expect = e-122 Identities = 145/466 (31%), Positives = 211/466 (45%), Gaps = 48/466 (10%) Query: 47 AALVDVLASRGWDVWRAKTVADALNLVKANRPHAGIVDFDSFASPDVASFEAL----LRD 102 L L+ G+DV A + A + D PD +F+ L Sbjct: 17 TVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDV---VMPDENAFDLLPRIKKAR 73 Query: 103 PRVGWVALADGERLRNITIARLIRHCCFDYVRNAAAYTTIGYLVGHAYGMLKLADGDPAA 162 P + + ++ A +DY+ T + ++G A K Sbjct: 74 PDLPVLVMSAQNTFMTAIKA--SEKGAYDYLPKPFDLTELIGIIGRALAEPK-RRPSKLE 130 Query: 163 EAPPPGGAMIGACGAMRRLFATIRKVANTEATVFIAGESGTGKELTAAAIHRQSSRADAP 222 + G ++G AM+ ++ + ++ T+ T+ I GESGTGKEL A A+H R + P Sbjct: 131 DDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGP 190 Query: 223 FVAVNCAAIPTTLLQAELFGHERGAFTGAHQRKIGRIEAAHGGTLFLDEIGDMPFESQAS 282 FVA+N AAIP L+++ELFGHE+GAFTGA R GR E A GGTLFLDEIGDMP ++Q Sbjct: 191 FVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTR 250 Query: 283 LLRFLQEGKIERLGGHASIPVDVRIVSATHVDLEAAMQAGRFRADLYYRLCVLRIDEPPL 342 LLR LQ+G+ +GG I DVRIV+AT+ DL+ ++ G FR DLYYRL V+ + PPL Sbjct: 251 LLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPL 310 Query: 343 RMRGRDIMLLADDVLRRYRDDGSYRIRGFTPCAIEAIHNYPWPGNVRELINRIRFAVVMT 402 R R DI L +++ +G ++ F A+E + +PWPGNVREL N +R + Sbjct: 311 RDRAEDIPDLVRHFVQQAEKEG-LDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALY 369 Query: 403 NGPLISAADLELR-------------------------------------PYTSLRPPTL 425 +I+ +E Sbjct: 370 PQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLY 429 Query: 426 AQARRQAERHAIEETLLRHRHQHADVAAELGISRATLYRLMIAHGL 471 + + E I L R A LG++R TL + + G+ Sbjct: 430 DRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 475
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 29.0 bits (65), Expect = 0.018 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 34 VAVYRSAAELVASLGGVDCDIVLVDYAIRGDEQMDGLALFDWLRRTRPNVGIVVLVANEN 93 V + +AA L + D D+V+ D + + L +++ RP++ ++V+ A Sbjct: 30 VRITSNAATLWRWIAAGDGDLVVTD--VV-MPDENAFDLLPRIKKARPDLPVLVMSAQNT 86 Query: 94 P 94 Sbjct: 87 F 87
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 29.8 bits (67), Expect = 0.015 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%) Query: 1 MRILVVG-AGAVGGYFGGRLAAAGRDVTFL----------VRDGRAAALARDGLLIRSPR 49 M+ LV G AG +G + RL AG V + ++ R LA+ G + Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFH--K 58 Query: 50 GDLT 53 DL Sbjct: 59 IDLA 62
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 106 bits (266), Expect = 6e-27 Identities = 74/416 (17%), Positives = 158/416 (37%), Gaps = 23/416 (5%) Query: 24 HSWALVVLLVGAILPPLDYFIVNLALPAIRDGIGAHQAELQLVVSAYACANAVVQITGGR 83 H+ L+ L + + L+ ++N++LP I + A V +A+ ++ G+ Sbjct: 12 HNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71 Query: 84 LGDLYGRKRMFMIGMAGFVLASTLCGLADNG-TVLVGGRVLQGLFAAILAPQVLATIRSV 142 L D G KR+ + G+ S + + + ++L+ R +QG AA V+ + Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 143 FSPQEQVRVMGFYGFAFGLAAVIGQLGGGALISLHPFGLGWRAIFLVNLPIGILALIGSW 202 + + + G G + +G GG + H +L+ +P+ + + Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMI--AHYIHWS----YLLLIPMITIITVPFL 185 Query: 203 RFIPENRAPRGQRIDVPGTVLMSLFLLMLVYPLTHGREAGWPLWMIACGVGALPMLGALL 262 + + D+ G +LMS+ ++ + T + + +++ Sbjct: 186 MKLLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLS------------F 233 Query: 263 AVEARRLARGHDPLLDVRLLRNPVVALGLLLAFL-FYTLSAFFLSYGIYLQGCLNWSPLA 321 + + + + DP +D L +N +G+L + F T++ F ++ S Sbjct: 234 LIFVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAE 293 Query: 322 SGFAIL-PLGLGFLASPLLTTRLVARFGGYRVLTLGFAMLAAGVAIAAALARDGAPGPGF 380 G I+ P + + + LV R G VL +G L+ A+ L + Sbjct: 294 IGSVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLL-ETTSWFMT 352 Query: 381 YAGIAAIGIGQGLVLPSVVRIVLAEVDAARAGVASGMVSAMLQIGAAVGAATIGGV 436 + +G G + IV + + AG +++ + G A +GG+ Sbjct: 353 IIIVFVLG-GLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 43.6 bits (103), Expect = 6e-07 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 37/203 (18%) Query: 13 LVLGASGGIGGEVARQLRDAGWQVRA-----------LKRGLDAEVVERDGIAWVRGDAL 61 LV GA+G IG V+++L +AG QV LK+ E++ + G + + D Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQA-RLELLAQPGFQFHKIDLA 62 Query: 62 DRDAVVRAAR--GCSVIVHAVNPPGYR----NWATQVLPMID---NTIAAARAAQ-ATVV 111 DR+ + + + + R N + N + R + ++ Sbjct: 63 DREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLL 122 Query: 112 LPGTVYNFGADA-FPVLREDAPQHPATRKGAIRVELERRLQDASA-HGVPAIVVRAGDFF 169 + +G + P +D+ HP + A + E S +G+PA +R + Sbjct: 123 YASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVY 182 Query: 170 GPQLGNSWFSQGLVKAGRPVAAI 192 GP GRP A+ Sbjct: 183 GP-------------WGRPDMAL 192
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 32.5 bits (74), Expect = 0.003 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 247 LLIAGGSRIGSDVLYALIVVFTLTYVTTVLHLSRPVALTAVMIGTACNALAVPFFGALSD 306 L A G + VL L+ + H +AL A+M P GALSD Sbjct: 15 ALDAVGIGLIMPVLPGLLRDLVHS-NDVTAHYGILLALYALM-----QFACAPVLGALSD 68 Query: 307 RFGRRPVYLAGAIAGIVWAFVF 328 RFGRRPV L V + Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIM 90
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 119 bits (299), Expect = 8e-32 Identities = 93/360 (25%), Positives = 154/360 (42%), Gaps = 23/360 (6%) Query: 42 LLAIALDAMGFGLVYPMMSAIFSDPHAGILPADAGAHARNFYLGLGYGVYPLCMFFGSSL 101 L +ALDA+G GL+ P++ + D D AH G+ +Y L F + + Sbjct: 11 LSTVALDAVGIGLIMPVLPGLLRDLV---HSNDVTAH-----YGILLALYALMQFACAPV 62 Query: 102 MGELSDRYGRRRVLLLCVLGLAAGYAMMAAGAWHASVALLLAGRGLTGLMAGCQGIAQAA 161 +G LSDR+GRR VLL+ + G A YA+MA + +L GR + G+ +A A Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATA---PFLWVLYIGRIVAGITGATGAVAGAY 119 Query: 162 ITDLSTPDTKAYNMSIMSLAFSAGVIVGPVLGGVTSDRTISPLFDYGTPFMLVAALSLIC 221 I D++ D +A + MS F G++ GPVLGG+ SP PF AAL+ + Sbjct: 120 IADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGG--FSP----HAPFFAAAALNGLN 173 Query: 222 ACWTWVSYRDSAAPRGDT-RIDPLLPLRIIVEAARQRDVAFLSVVFFLMQVGYGLYLQTI 280 +S R + L PL A VA L VFF+MQ+ + Sbjct: 174 FLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALW 233 Query: 281 MLLLQAKFGYTSARLGLFSGVIGLCFVFGLLCVVRLMLRVWRVIDIAKTGLLVAGLGQIL 340 ++ + +F + + +G+ G+ + + G++ G G IL Sbjct: 234 VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYIL 293 Query: 341 SALFPHEPVLWALAMVVGCFDMV--AYTTMYTAFSDAVSDDRQGWALGVAGSVMAVAWVV 398 A + + + +++ + A M S V ++RQG G ++ ++ +V Sbjct: 294 LAFATRGWMAFPIMVLLASGGIGMPALQAM---LSRQVDEERQGQLQGSLAALTSLTSIV 350
>ISCHRISMTASE#Isochorismatase signature. Length = 312 Score = 59.6 bits (144), Expect = 5e-13 Identities = 46/208 (22%), Positives = 71/208 (34%), Gaps = 25/208 (12%) Query: 4 PTIRTLAGASAPTSIAAARTALLVIDFQNEYFSGRLP--IPDGPGALGNARRVIAFADRA 61 PT + R LL+ D Q YF N R++ + Sbjct: 12 PTASDMPQNKVSWVPDPNRAVLLIHDMQ-NYFVDAFTAGASPVTELSANIRKLKNQCVQL 70 Query: 62 GIPVFHVQHVGT---ADSPIFAD----GSDGFRFH----SDLHPAPQHTVVQKTSVSVFP 110 GIPV + G+ D + D G + + ++L P V+ K S F Sbjct: 71 GIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPEDDDLVLTKWRYSAFK 130 Query: 111 TTDLDARLKAAGIDTLIVTGLMTHACVAGAARDAVPLGYAVIVVDDACATRDLDVADGGT 170 T+L ++ G D LI+TG+ H A +A V DA VAD Sbjct: 131 RTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDA-------VADFS- 182 Query: 171 VPHRDLHRATLAALSDTFGDVLTTEQVL 198 + H+ L + + T+ +L Sbjct: 183 ---LEKHQMALEYAAGRCAFTVMTDSLL 207
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 208 bits (532), Expect = 4e-67 Identities = 97/373 (26%), Positives = 147/373 (39%), Gaps = 53/373 (14%) Query: 1 MNKTLIVAAAAASFATVAHAQSSVTLYGVLDAGITYQSNVGGKSLWS----MGSGIDQ-- 54 M K+LI AA A + VTLYG + AG+ +V + G+GI Sbjct: 1 MKKSLIALTLAA---LPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57 Query: 55 SRFGLRGSEDLGGGLKAIFTLESGFNIGNGRFANGNGGMFNRQAFVGLSSQYGTVTLGKQ 114 S+ G +G EDLG GLKAI+ +E +I A + G NRQ+F+GL +G + +G+ Sbjct: 58 SKIGFKGQEDLGNGLKAIWQVEQKASI-----AGTDSGWGNRQSFIGLKGGFGKLRVGRL 112 Query: 115 YDATQDY--LAPLTATGSW-GGTYFAHPLNNDRLSTNGDVALNNSIKYTSANYAGLQFGG 171 +D + P + + G A P RL S++Y S +AGL Sbjct: 113 NSVLKDTGDINPWDSKSDYLGVNKIAEP--EARLI---------SVRYDSPEFAGLSGSV 161 Query: 172 TYSFSNNTNFGNNRAYSGGLSYQFQGLKLGAAYSQANLGDGTNTNGASTLGGQGRVRTYG 231 Y+ ++N N+ +Y G +Y+ G + + V Y Sbjct: 162 QYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYD 221 Query: 232 AAAGYAFGPAQVGAA--WTQSRIDNQAAGVPTLRADNYEVNAKYNLTPALGLGAAYTYTN 289 A YA Q A ++ N V A + N ++ A G ++ T Sbjct: 222 NDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFG-NVTPRVSYAHGFKGSFDAT- 279 Query: 290 AKVNNGSSHWNQFGVQADYALSKRTDVYAQAVYQRGAKGNNIVGTGIYNGDNTTASSSSV 349 N ++ ++Q V A+Y SKRT A + + KG S Sbjct: 280 ----NYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKG-----------------ESKF 318 Query: 350 NQTAATVGLRHRF 362 TA VGLRH+F Sbjct: 319 VSTAGGVGLRHKF 331
>AUTOINDCRSYN#Autoinducer synthesis protein signature. Length = 216 Score = 131 bits (332), Expect = 1e-40 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 10/155 (6%) Query: 11 LPHELAADLGRYRRRVFVEQLGWALPSANESFERDQFDRDDTVYVFARNADGDMCGCARL 70 L + +L R+ F ++L WA+ + E DQ+D ++T Y+F D + R Sbjct: 12 LSETKSGELFTLRKETFKDRLNWAVQCTD-GMEFDQYDNNNTTYLFGIK-DNTVICSLRF 69 Query: 71 LPTTRPYLLKSLFADLVAEDMPLPQSAAVWELSRFAATDDEGGPGNAEWAVRP----MLA 126 + T P ++ F ++ +P+ E SRF D+ + P + Sbjct: 70 IETKYPNMITGTFFPYFK-EINIPEG-NYLESSRFFV--DKSRAKDILGNEYPISSMLFL 125 Query: 127 AVVECAAQLGARQLIGVTFASMERLFRRIGIHAHR 161 +++ + G + + M + +R G Sbjct: 126 SMINYSKDKGYDGIYTIVSHPMLTILKRSGWGIRV 160
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 31.6 bits (71), Expect = 0.009 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 402 SAVLMQARNDAESASARLTRTKEEAVRQVVAAQNAVQTSLASHDAAKALVDAAQTSYDAA 461 + +A +AE + R K E RQ+ A+ + A + AKA V+ AQ AA Sbjct: 143 AEAAEKAFQEAEQRRKEIEREKAETERQLKLAEAEEKRLAALSEEAKA-VEIAQKKLSAA 201 Query: 462 LTAYRNGVGSVTDATIAQSQLLAARNAEVDSYAGALSAAAA 502 + G + S + AR+AE+ + AG + A Sbjct: 202 QSEVVKMDGEIKTLNSRLSSSIHARDAEMKTLAGKRNELAQ 242
>adhesinmafb#Neisseria meningitidis: adhesin MafB signature. Length = 467 Score = 30.4 bits (68), Expect = 0.027 Identities = 27/108 (25%), Positives = 34/108 (31%), Gaps = 13/108 (12%) Query: 281 AILERGGYPVDVTLALPPADALPPLARIAATDLQDAITHFAEPGATA--------PTVDA 332 IL Y +D A+ LP + A ++ F + A P Sbjct: 250 DILYGTRYAIDKA-AMRNIAPLPAEGKFAVIGGLGSVAGFEKNTREAVDRWIQENPNAAE 308 Query: 333 TAEASANATPAAAAATPEAPAAAPAPAPHGGFFLPDARTN---PDHIR 377 T EA N AA A A AA P A G F + D R Sbjct: 309 TVEAVFNVAAAAKVAK-LAKAAKPGKAAVSGDFADSYKKKLALSDSAR 355
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 102 bits (257), Expect = 7e-27 Identities = 72/343 (20%), Positives = 123/343 (35%), Gaps = 52/343 (15%) Query: 15 PALLLAGTAHAQQSITLYGLIDEGLNFTSNAGGHRAWQMSSGDT-----FGSRWGLKGSE 69 AL +A A +TLYG I G+ + + + A S GS+ G KG E Sbjct: 11 AALPVAAMA----DVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQE 66 Query: 70 DLGGGDKAIFQLENGFNVNSGKLGQDSSMFGRQAFVGLSSSRYGTLTLGRQYDTSVDALG 129 DLG G KAI+Q+E ++ G DS RQ+F+GL +G L +GR D Sbjct: 67 DLGNGLKAIWQVEQKASIA----GTDSGWGNRQSFIGLKGG-FGKLRVGRLNSVLKDTGD 121 Query: 130 FGGITAAGNWAGDIATHPFDNDNTDWDFRVNNAVKYVTPTYRGLTAEAMYGFSNQPGGFS 189 + ++ G + +V+Y +P + GL+ Y ++ G Sbjct: 122 INPWDSKSDYLGVNKIAEPEARLI--------SVRYDSPEFAGLSGSVQYALNDN-AGRH 172 Query: 190 NNRVWGATLNYQSGNLTAAASYLKLNNPGLAAGGTVNSGDLFNGSSQQDIGVAASYQFTH 249 N+ + A NY++G + + N Q + + Y Sbjct: 173 NSESYHAGFNYKNGGFFVQYGGAYKRHH--------QVQENVNIEKYQIHRLVSGY---- 220 Query: 250 VLVGAAWSHVDVYNPDGNAWIDNTALQNGATWNAWKFDNFELNAQYYFTHALWLGASYTF 309 + V +A ++ + N+ E+ A + + + Sbjct: 221 ---DNDALYASVAVQQQDA----KLVEENYSHNS----QTEVAATLAYR---FGNVTPRV 266 Query: 310 TIAHLYTSDTKYV---PKWHQIGMMLDYDLSKRTSLYLQGAWQ 349 + AH + + Q+ + +YD SKRTS + W Sbjct: 267 SYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWL 309
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 40.3 bits (94), Expect = 4e-06 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 322 RSCWTEGPYCYLQDLYTAPDARGQGAGGALIEAVYERAREAGASRVYWLTHETNTTARAL 381 RS W Y ++D+ A D R +G G AL+ E A+E + T + N +A Sbjct: 83 RSNWNG--YALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHF 140 Query: 382 YDK 384 Y K Sbjct: 141 YAK 143
>V8PROTEASE#V8 serine protease family signature. Length = 336 Score = 60.8 bits (147), Expect = 3e-12 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 26/157 (16%) Query: 124 SGSGSGFIVSADGLILTSAHVVDEATDVTVRLTDRR-----------EFKAT-VLAVDPQ 171 + SG +V +LT+ HVVD L F A + + Sbjct: 101 TFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE 159 Query: 172 SDVAVLRVDATK--------LPFVRIGDSSKVRAGEPVMTIGAPDGSGNTVTAGIVSATS 223 D+A+++ + + + ++++ + + + G P G T Sbjct: 160 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP-GDKPVATMWESKGKI 218 Query: 224 RRLPDGSAFPFFETDIAPNPDNSGGPVFNRAGDVIGI 260 L + D++ NSG PVFN +VIGI Sbjct: 219 TYLKG----EAMQYDLSTTGGNSGSPVFNEKNEVIGI 251
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 54.8 bits (132), Expect = 2e-10 Identities = 74/318 (23%), Positives = 117/318 (36%), Gaps = 21/318 (6%) Query: 18 TLIVLCALSVLPLSLFLPSLPAIVRDLHTDYALVA---LSLGGYAAVAASLECVTGPLSD 74 ++ AL + + L +P LP ++RDL + A + L YA + + V G LSD Sbjct: 9 VILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSD 68 Query: 75 RFGRRPIVLTSVALFALGSLGCAMATDIRVFLGCRLMQAAITSVYPVSMAAIRDSGGGAR 134 RFGRRP++L S+A A+ A A + V R++ + V+ A I D G Sbjct: 69 RFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDE 128 Query: 135 AASRIGYAAMAAAFAPMLGPTLGGALDETVGWRASFWLLAVIGTALLAWCVRDLAETHTH 194 A G+ + F + GP LGG + A F+ A + L E+H Sbjct: 129 RARHFGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLTGCFLLPESHKG 187 Query: 195 RPSSFGQQLRAYPALLRARRFWAYALCMAFSTGAFYAFLAGAPLAATTLFGI-----PPA 249 ++ A R R + + + P A +FG Sbjct: 188 ERRPLRREALNPLASFRWARGMT-VVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDAT 246 Query: 250 EIGFYMGTITAGFVCGSF----LAARVARRHALATTILCGRIVACAGPLIGLALLFGGVT 305 IG ++ A + S + VA R ++ G I G LL Sbjct: 247 TIGI---SLAAFGILHSLAQAMITGPVAARLGERRALMLGMIAD----GTGYILLAFATR 299 Query: 306 HALAWFGPCVLVGVGNGL 323 +A+ +L G G+ Sbjct: 300 GWMAFPIMVLLASGGIGM 317
>PF05272#Virulence-associated E family protein Length = 892 Score = 29.3 bits (65), Expect = 0.033 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 9/145 (6%) Query: 238 RDANGHERWW-LDVTGKGGRQRLVPATDEMMAE-LTRYRRTHGLPALPLDGEPTPLVLPF 295 D G+ R+W + V G+ L ++ AE L Y P D E Sbjct: 700 FDITGNRRFWPVLVPGRANLVWLQKFRGQLFAEALHLYLAGERYFPSPEDEEIYFRP--- 756 Query: 296 GQARKPLTRAALHRIVKQVFRHAAGRLRANGETGEQAARVLEQ----ASAHWLRHSAGSH 351 Q + + R+ + R A + G A S Sbjct: 757 EQELRLVETGVQGRLWALLTREGAPAAEGAAQKGYSVNTTFVTIADLVQALGADPGKSSP 816 Query: 352 MADGRVDLRLVRDNLGHVSLTTTSQ 376 M +G+V L + ++ T+ + Sbjct: 817 MLEGQVRDWLNENGWEYLRETSGQR 841
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 142 bits (360), Expect = 8e-40 Identities = 92/412 (22%), Positives = 173/412 (41%), Gaps = 18/412 (4%) Query: 7 HSVLLWIVAAAFFMQSLDTTIVNTALPSIAQSLHASPLAMQPVVVVYTLTMAMLTPASGW 66 + +L+W+ +FF L+ ++N +LP IA + P + V + LT ++ T G Sbjct: 13 NQILIWLCILSFF-SVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGK 71 Query: 67 LADRFGTRRVFSVAILVFVLASIGCAASHTLGQ-LVVARAVQGIGGSMLLPIGRLAVLRR 125 L+D+ G +R+ I++ S+ H+ L++AR +QG G + + + V R Sbjct: 72 LSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARY 131 Query: 126 VPGEQYVAAIAFVSIAGQLGPIVGPTLGGWLTQAISWHWVFIVNVPVGVVGFIAVQRYLP 185 +P E A + +G VGP +GG + I HW +++ +P+ + + L Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYI--HWSYLLLIPMITIITVPFLMKLL 189 Query: 186 HDQATQPPPFDFVGCALLSAAMIALSLAIDPPMSTHRAAWSAALAGLGLASALAYLPHAR 245 + FD G L+S ++ L + + L ++ H R Sbjct: 190 KKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLIVSVLSF--------LIFVKHIR 241 Query: 246 RRTQPLFRLGLFREPNFGSGLLGNLLCRIGTSSVPFMLPLLMQVQLGYTPLRSG-LMMLP 304 + T P GL + F G+L + + M+P +M+ + G +++ P Sbjct: 242 KVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFP 301 Query: 305 AAIAGVIAKRWIAPLVKRFG--YAAFLVVNTGIVGCAIAGFALVSARPAPVLEGVLLIVF 362 ++ +I LV R G Y + V V A F L + + +++ V Sbjct: 302 GTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTI--IIVFVL 359 Query: 363 GAANSMQFAAMNGVTLKGLSHADAGSGNSLFTMMQMLAMGLGVSIGGGLVNL 414 G + + + + L +AG+G SL L+ G G++I GGL+++ Sbjct: 360 GGLSFTKTVI-STIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 116 bits (292), Expect = 2e-30 Identities = 78/406 (19%), Positives = 166/406 (40%), Gaps = 13/406 (3%) Query: 14 RRGVTLLTLCIAVLVAQVDTAVVNLATRAIGAYFHAGVGALQWVVDSYNLTYAVLLLTGG 73 R L+ LCI + ++ V+N++ I F+ + WV ++ LT+++ G Sbjct: 11 RHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYG 70 Query: 74 LLADLYGRRRVFMAGTAVFTIASLLCALAPS-VSVLIAARALAGVGAALLLPASLAVVRV 132 L+D G +R+ + G + S++ + S S+LI AR + G GAA PA + VV Sbjct: 71 KLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAA-AFPALVMVVVA 129 Query: 133 VWRDPVERGRALGIWAACNGVAMAIGPTLGGVLIRHFGWRSIFFVVVPLSIAAMLLAIPA 192 + RG+A G+ + + +GP +GG++ + W + +++P+ + + Sbjct: 130 RYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMK 187 Query: 193 VPESSDPHGRHFDGAAQVTGALALGALAYAAIVFREAPVACAIAGCIAVASFAGFVAIER 252 + + HFD + ++ + + + + ++V SF FV R Sbjct: 188 LLKKEVRIKGHFDIKGIILMSVGIVFFMLFTTSYSISFLI------VSVLSFLIFVKHIR 241 Query: 253 RHGESALVPLDIFRISAFRGAIVATTGMTFGMYGVLFLLPLTWQSIGRLDSTGAGLALLP 312 + V + + F ++ + + G + ++P + + +L + G ++ Sbjct: 242 K-VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIF 300 Query: 313 MALVFVVVS-PCSGPLSERIGTRATTAGGVAVIASGLAVISVSASSSSLLGAEIGLALTG 371 + V++ G L +R G GV ++ S ++S I + Sbjct: 301 PGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMT-IIIVFVL 359 Query: 372 LGMGIATGPLMTVAVGAVDAARSGTASALVNVARMAGATLGIAVLG 417 G+ + T+ ++ +G +L+N GIA++G Sbjct: 360 GGLSFTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVG 405
>PilS_PF08805#PilS N terminal Length = 185 Score = 132 bits (333), Expect = 2e-41 Identities = 41/165 (24%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 38 RGASLLEAISYLGIAAIVVIGAIALLAGAFSSANTNSITEQVNAIQSGVKKLYMGQSASY 97 +GA+L+E + +G+ ++ A L + S+ +++ V + + +K L + Sbjct: 26 KGATLMEVLLVVGVIVVLAASAYKLYSMVQSNIQSSNEQNNVLTVIANMKSLKFQGRYTD 85 Query: 98 ANLSNSVLASAGVFPSTLAPASGSGAITNMWNGTITVAAATNNSNQFTITYTNVPRSVCV 157 +N + L + G+ PS + + + N W G++T+ +++ + F + NVP+ C+ Sbjct: 86 SNYIKT-LYAQGLLPSDMIADTTGASAKNPWGGSVTITTSSDKYS-FNVVEANVPQKNCM 143 Query: 158 NSVTAGGSWISIT-VNETALTLPATPDSAATACASGDTNTVAWTS 201 V A S +I+ +N T + SAAT CAS D+NT+ +++ Sbjct: 144 AMVNALRSSSAISKINNT----STSTVSAATVCAS-DSNTLTFST 183
>BCTERIALGSPH#Bacterial general secretion pathway protein H signature. Length = 170 Score = 44.6 bits (105), Expect = 2e-07 Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 7 RQRGFTIVEMLAALAIASLMIVGVTAMIDTSLADAKGQQAAAWQAQMTQAAAQLITQNQ 65 RQRGFT++EM+ L + + V S D+ Q A ++AQ+ + + Q Sbjct: 2 RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQ 60
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 264 bits (675), Expect = 2e-82 Identities = 93/312 (29%), Positives = 153/312 (49%), Gaps = 27/312 (8%) Query: 277 SQQLSSAVASSGPTAGGQASGGGDEEALPVIEADQRTNSVLIRDTPDRMYQYPALIQRLD 336 + Q + P A +AS A +EAD N++++RD+P+RM Y LI LD Sbjct: 223 TIQQVTVDNQRIPQAATRAS------AQARVEADPSLNAIIVRDSPERMPMYQRLIHALD 276 Query: 337 VKPRLIEIEAHIFEVDTSSIRQLGVNWTAHNSHIDLQTGNGLGAQNTYGGTLTQNFGNTT 396 IE+ I +++ + +LGV+W ++TGN G + N Sbjct: 277 KPSARIEVALSIVDINADQLTELGVDWRV-----GIRTGNNHQVVIKTTGDQSNIASN-- 329 Query: 397 LAGNVTAAAMPVGGVLSAVIGNAGRYLMANVSALEEQNLAKIDASPKVTTLDNIEADMAN 456 G + S V YL+A V+ LE + A++ + P + T +N +A + + Sbjct: 330 ------------GALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377 Query: 457 QTQFFVRVSGYTSADLYSVSTGVSLRVLPMVVDEGGRTQIKLDVAIQDGQL--TSRTVDN 514 ++V+V+G A+L ++ G LR+ P V+ +G +++I L++ I+DG S ++ Sbjct: 378 SETYYVKVTGKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEG 437 Query: 515 IPVISSTNINTSAFVNEGEALLIAGYKNDGRIDTTTGVPVLSKIPVIGNLFKYTDRENTR 574 IP IS T ++T A V G++L+I G D + VP+L IP IG LF+ R Sbjct: 438 IPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELTRR 497 Query: 575 MERLFLLTPRII 586 RLF++ PRII Sbjct: 498 TVRLFIIEPRII 509 Score = 177 bits (449), Expect = 3e-50 Identities = 70/244 (28%), Positives = 110/244 (45%), Gaps = 11/244 (4%) Query: 4 FRFGLLFILVAAC----VAATVHAAPVNWHTRMVDYTADSKDIKDVLRDFAASQGIPADI 59 F F V +++ A ++W Y A + ++D+L DF A+ + Sbjct: 3 FPLHSFFKRVLTGTLLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVV 62 Query: 60 SKDVQGSVTGKF-HMPPQRLLDTLASSFGFVWYYDGQVLDIVTPDEMKSTLIKLDHGSTA 118 S + V+G+F H PQ L +AS + VWYYDG VL I E+ S LI+L A Sbjct: 63 SDKINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAA 122 Query: 119 QLRSTLAAMNVTDPRFRITYDDVQGAAIVNGPPNYVKLVGDVAQRLDTTTRHRA----GT 174 +L+ L + +PRF D V+GPP Y++LV A L+ T+ R+ Sbjct: 123 ELKQALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGAL 182 Query: 175 VVQVYPLHHAWAMDRSVVADGQSMTLLGVATVLNNVYH--PQQGGGGNSGGGGRAPNVQR 232 ++++PL +A A DR++ + GVAT+L V Q ++ +A Sbjct: 183 AIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQAATRAS 242 Query: 233 AQPM 236 AQ Sbjct: 243 AQAR 246
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 78.7 bits (194), Expect = 6e-19 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 1/129 (0%) Query: 5 TRIMLLEDDRIQQTMLVSWLKAEGYQVEAFDNGIEARNHLSDHWADLMILDWDVPGLSGD 64 I++ +DD +T+L L GY V N ++ DL++ D +P + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 65 KLLSWVRGRSRSTVPVIFQTVHSDEEEIVRILDTGADDFLIKPVDRIVFLARIRALLRRF 124 LL ++ R +PV+ + + ++ + GA D+L KP D + I L Sbjct: 64 DLLPRIKKA-RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122 Query: 125 QTAGSERRR 133 + S+ Sbjct: 123 KRRPSKLED 131
>TYPE3OMGPROT#Type III secretion system outer membrane G protein family signature. Length = 607 Score = 164 bits (417), Expect = 2e-46 Identities = 83/273 (30%), Positives = 126/273 (46%), Gaps = 14/273 (5%) Query: 77 PPWSSAPYRYSTSGASLPDTLRALSAATHVPIAFDAGLPGRVEGRFEL-PPQRFVEMLAH 135 W PY Y G SL D L A + + +V G+FE PQ F++ +A Sbjct: 29 LDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIAS 88 Query: 136 GYGLVWYYDGTVLHVDAAGTQTTLIVRLNYARPTDLHALLAQTGIDDVRFVARDDAPARG 195 Y LVWYYDG VL++ + ++RL + +L L ++GI + RF R D + Sbjct: 89 LYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFGWRPD-ASNR 147 Query: 196 LITFRGPPAWIALVGRAAQRLDADARARV----KTAVRIVPLHYGNAADRSAFANGRSNV 251 L+ GPP ++ LV + A L+ + R A+ I PL Y +A+DR+ Sbjct: 148 LVYVSGPPRYLELVEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVA 207 Query: 252 VQGVASRAARVLDPHDSLRATITEYEAP--------LPVLGADAGTNAVLVRDRPERLDA 303 GVA+ RVL + T+ P + AD NA++VRD PER+ Sbjct: 208 APGVATILQRVLSDATIQQVTVDNQRIPQAATRASAQARVEADPSLNAIIVRDSPERMPM 267 Query: 304 DVRAIIALDRPRQHVGLGLLVAEVDTDALGAIG 336 R I ALD+P + + L + +++ D L +G Sbjct: 268 YQRLIHALDKPSARIEVALSIVDINADQLTELG 300
>PF05932#Tir chaperone protein (CesT) Length = 127 Score = 29.0 bits (65), Expect = 0.003 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 8/96 (8%) Query: 37 DVRLD-----HFENDPEAMYVNFHYGTVTAGRTLVIFRLMLEANLLIYAQDQAQLGLDAD 91 ++ +D D + G + + + L L L LGLD Sbjct: 31 NMIIDNTFALTLSCDYARERLLL-IGLLEPHKDIPQQCL-LAGALNPLLNAGPGLGLDEK 88 Query: 92 TGGIILILRLPLTPDVDGAVVADTVSHYTEHGRYWR 127 +G +P + + ++ E R WR Sbjct: 89 SGLYHAYQSIPRE-KLSVPTLKREMAGLLEWMRGWR 123
>FLGPRINGFLGI#Flagellar P-ring protein signature. Length = 373 Score = 28.0 bits (62), Expect = 0.036 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 71 IGVHQGLLKLAIFNVSGRGCTFS-GVPSGGWFGEGSVIKREL 111 V QG L + F+ G T + GV + G++I+REL Sbjct: 142 YAVAQGALIVNGFSAQGDAATLTQGVTTSARVPNGAIIEREL 183
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 637 bits (1645), Expect = 0.0 Identities = 247/1056 (23%), Positives = 444/1056 (42%), Gaps = 51/1056 (4%) Query: 3 IVNLALRRPYTFIVMAIMIVLATPLALMRTPVDVLPAINIPVISVIWNYSGFSATEMTNR 62 + N +RRP V+AI++++A LA+++ PV P I P +SV NY G A + + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 63 ITSVHERILTTTVNNIQHVESTSLP-GIAVVKVFLQPGANVQTAIAQTVSSAQAIVRQMP 121 +T V E+ + ++N+ ++ STS G + + Q G + A Q + Q +P Sbjct: 61 VTQVIEQNMNG-IDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLP 119 Query: 122 QGATPPLVITYSASSIPVIQLGLSS--KTLSEQSLADIALNFLRPQLITVPGVQIPFPYG 179 Q + +SS ++ G S ++ ++D + ++ L + GV +G Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 180 GRTRVVAIDLDPQALQAKGLTPADIVNAVNAQNLVLPTGT-----AKMGQT-EYRIDTNA 233 + + I LD L LTP D++N + QN + G A GQ I Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 234 SADTVADISNLPVQT-INGATTYLREVAAVRDGFAPQTNVVRQNGQRGVLISILKSGDAS 292 + + ++ +G+ L++VA V G + R NG+ + I + A+ Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 293 TLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFVNAAVQGVIHEALIAAVLTAMMILLF 352 L +KA L ++ P P+G+ + +D + FV ++ V+ A +L +++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 353 LGNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVGILVDDATVTIENIER 412 L N R+TLI I++P+ + + L+A G +IN +T+ G+ LA+G+LVDDA V +EN+ER Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 HLH-LGTNLHDAILEGAGEIAVPALVSTLCICIVFVPMFFLTGVARFLFVPLAEAVVFAM 471 + +A + +I + + + VF+PM F G ++ + +V AM Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 472 LASYVLSRTLVPTLAMLLFRPQQANTGADHSTSRFARIHHAFNHAFERLRAWYIVLLSIL 531 S +++ L P L L +P A+H ++ FN F+ Y + + Sbjct: 479 ALSVLVALILTPALCATLLKPV----SAEHHENK-GGFFGWFNTTFDHSVNHYTNSVGKI 533 Query: 532 LVRRRFYALCFLGFCVLSTGLVFMLGRDFFPNADSGNLRLHVRAPTGYRIEETARLADQV 591 L Y L + L L F P D G ++ P G E T ++ DQV Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 592 ERVIRETVPPDELGAIVDNLGLPVSGINLSYSNAGTIGTLDGELLIALKPGHRATGH--- 648 L N+ + S+S G ++LKP G Sbjct: 594 TDYY--------LKNEKANVESVFTVNGFSFSGQAQN---AGMAFVSLKPWEERNGDENS 642 Query: 649 ---YVQTLRTLLPQRFPGVEFFFQPSDIITQILNFGQPAAIDVQVLGNDLASNMTIAS-S 704 + + L + G F I+ L ++ +T A Sbjct: 643 AEAVIHRAKMELGKIRDGFVIPFNMPAIVE--LGTATGFDFELIDQAGLGHDALTQARNQ 700 Query: 705 LMKKIRQIPGAV-DVHVLQRNDEPTLLADMDRTRMQQLNLSAQNVAQNMLISLSGSSQTT 763 L+ Q P ++ V D ++D+ + Q L +S ++ Q + +L G+ Sbjct: 701 LLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND 760 Query: 764 PSFWINPRTGVQYPLQIQTPQYNLSSVDDLLGTPISASGRTGTPLQLLGNLVQVRSTVNP 823 G L +Q +D+ + ++ P Sbjct: 761 -----FIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVP---FSAFTTSHWVYGS 812 Query: 824 AVITHYNIRPAIDVYVSVEGRDLGAVAGEIDRIVADARATLPRGTDLTMRGQIETMRTSY 883 + YN P++++ G +G+ ++ + + LP G G R S Sbjct: 813 PRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQERLSG 869 Query: 884 IGLGAGVAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTG 943 A VA++ V+V+L + ++SW P+ ++ +P + G+ + V + G Sbjct: 870 NQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVG 929 Query: 944 AIMTVGVATANSILVVSFARQRLAA-GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMA 1002 + T+G++ N+IL+V FA+ + G + A L A R+RP+LMT+LA I+G++P+A Sbjct: 930 LLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLA 989 Query: 1003 LGLGEGAEQNAPLGRAVIGGLLFATVSTLLFVPLVF 1038 + G G+ +G V+GG++ AT+ + FVP+ F Sbjct: 990 ISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFF 1025 Score = 126 bits (317), Expect = 2e-31 Identities = 82/517 (15%), Positives = 179/517 (34%), Gaps = 43/517 (8%) Query: 3 IVNLALRRPYTFIVMAIMIVLATPLALMRTPVDVLPAINIPVISVIWNY-SGFSATEMTN 61 V L ++++ +IV + +R P LP + V + +G + Sbjct: 529 SVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQK 588 Query: 62 RITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQTV----------- 110 + V + L N++ V V F G +A Sbjct: 589 VLDQVTDYYLKNEKANVESV--------FTVNGFSFSGQAQNAGMAFVSLKPWEERNGDE 640 Query: 111 SSAQAIV-RQMPQGATPPLVITYSASSIPVIQLGLSS----KTLSEQSLADIALNFLRPQ 165 +SA+A++ R + + +++LG ++ + + + L AL R Q Sbjct: 641 NSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQ 700 Query: 166 LITVPGVQIPFPYGGRTRVVA------IDLDPQALQAKGLTPADIVNAVNAQNLVLPTGT 219 L+ + R + +++D + QA G++ +DI ++ Sbjct: 701 LLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVND 760 Query: 220 AKMGQTEYRIDTNASAD---TVADISNLPVQTINGATTYLREVAAVRDGFAPQTNVVRQN 276 ++ A A D+ L V++ NG + + R N Sbjct: 761 FIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGS-PRLERYN 819 Query: 277 GQRGVLISILKSGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFVNAAVQGVIH 336 G + I + S+ ++ ++ L K LP G+ + Q Sbjct: 820 GLPSMEIQGEAAPGTSSGDAMALMENLASK----LPAGIGYDWTGMSYQERLSGNQAPA- 874 Query: 337 EALIAAVLTAMMILLFL-GNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALA 395 + + + + L L +W + + + +PL I L+A + + ++ + GL Sbjct: 875 -LVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTT 933 Query: 396 VGILVDDATVTIENI-ERHLHLGTNLHDAILEGAGEIAVPALVSTLCICIVFVPMFFLTG 454 +G+ +A + +E + G + +A L P L+++L + +P+ G Sbjct: 934 IGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNG 993 Query: 455 VARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFR 491 + V+ M+++ +L+ VP +++ R Sbjct: 994 AGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR 1030
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 39.4 bits (92), Expect = 2e-05 Identities = 21/193 (10%), Positives = 53/193 (27%), Gaps = 22/193 (11%) Query: 86 ASGYVLRWQADIGAHVKQGQTLAELDTPELNQELAQATAQRQQAQAALALAKTS------ 139 + V G V++G L +L + + + QA+ + Sbjct: 103 ENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIEL 162 Query: 140 ----------FDRAQQLRQRDAVSQQELDDRQGAFSQGSANLAAADANMRRLT-ELKGFQ 188 Q + + + + L + FS + N+ + E Sbjct: 163 NKLPELKLPDEPYFQNVSEEEVLRLTSL--IKEQFSTWQNQKYQKELNLDKKRAERLTVL 220 Query: 189 RIVAPID---GIVTQRNVDVGDLVNSGNAGRSLFTVVQADRLRLYVQVPQAYAQQVKVGQ 245 + + + R D L++ + + + ++ +Q ++ Sbjct: 221 ARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIES 280 Query: 246 HVSVAQAELPGRT 258 + A+ E T Sbjct: 281 EILSAKEEYQLVT 293
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 30.2 bits (68), Expect = 0.020 Identities = 14/102 (13%), Positives = 37/102 (36%) Query: 162 RNVEAAQASTEQSRDDFANARLVLSADLASSYFTLRELDTEIDVVKRSIDLQQKALDYVS 221 V + ++ + N + +L + I+ + +++ LD S Sbjct: 182 EEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFS 241 Query: 222 ARHDLGAVSGLDLLQQRAQLDATRTQAQLLIQQRAQVETAIA 263 + A++ +L+Q + + ++ Q Q+E+ I Sbjct: 242 SLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEIL 283
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.9 bits (210), Expect = 4e-21 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 2 KVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVE-FDYDVVVLDVMLPKLDGF 60 +L+ +D+ + L L+ G+ V + W+ + D D+VV DV++P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAAT-LWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 61 GVLRALRA-QKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 +L ++ + PV++++A++ ++ GA DYL KPF ELI + + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 120 VQESTLISIGDLRVDLIGR 138 + S L + L+GR Sbjct: 124 RRPSKLEDDSQDGMPLVGR 142
>PF06580#Sensor histidine kinase Length = 349 Score = 36.4 bits (84), Expect = 2e-04 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 31/133 (23%) Query: 303 RASDLKDVSLADEVRRMLDFLEIPLDEAQLRAELHGDARAAVDPSLFRRAMTNLLI---- 358 R S+ + VSLADE+ + +L++ A ++ E ++P++ + +L+ Sbjct: 209 RYSNARQVSLADELTVVDSYLQL----ASIQFEDRLQFENQINPAIMDVQVPPMLVQTLV 264 Query: 359 -NAIQH----SAPGATLNVTITRRDTLVEMAVSNPGEPIDPVQRSHVFERFYRLEEARAN 413 N I+H G + + T+ + V + V N G N Sbjct: 265 ENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALK------------------N 306 Query: 414 SKENHGLGLSIVK 426 +KE+ G GL V+ Sbjct: 307 TKESTGTGLQNVR 319
>PF06580#Sensor histidine kinase Length = 349 Score = 42.5 bits (100), Expect = 2e-06 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 24/104 (23%) Query: 367 LIDNAIRYA----GDRAVITVRVSRDGADARLDVIDNGPGIPADERDAVFERFHRGSKTQ 422 L++N I++ I ++ ++D L+V + G + + Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK-------------- 308 Query: 423 TVEGTGLGLSIVRE-IARVH--QGSVTLADAAGGGLIVTIRLPA 463 E TG GL VRE + ++ + + L++ G + +P Sbjct: 309 --ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVN-AMVLIPG 349
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 96.8 bits (241), Expect = 2e-25 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Query: 2 RVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGLE 61 +L+ +D+ + LN ALS A + V ++ + D LV+ D+ +P + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTE-LEARARALIRRSL 120 +L R++ R +PVL+++A + +K + GA DYL KPF+LTE + RAL Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 GHEHSRVE 128 + Sbjct: 125 RPSKLEDD 132
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 63.4 bits (154), Expect = 5e-13 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 3/161 (1%) Query: 32 SLPAMADALHGTDAQLQLTLTLYMVGYALSMLVSGPLSDRYGRRPVLLGGLCVYVVASVA 91 SLP +A+ + A T +M+ +++ V G LSD+ G + +LL G+ + SV Sbjct: 36 SLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVI 95 Query: 92 CAWSTS-IPALIAARMFQALGGCCGTVIGRVIVRERFPAATQATMLGHISAGMALSPVVA 150 S LI AR Q G + V+V P + G I + +A+ V Sbjct: 96 GFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 151 PLAGSAIAQWLGWRGVFGWLAAGGLVATAMVLRYLPETRER 191 P G IA ++ W + + T L L + R Sbjct: 156 PAIGGMIAHYIHWSYLLLIPMI--TIITVPFLMKLLKKEVR 194
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 80.6 bits (199), Expect = 3e-19 Identities = 78/324 (24%), Positives = 126/324 (38%), Gaps = 35/324 (10%) Query: 20 AACLAAPAAHAQSSVTMYGIMDAGIEFTNHAAPEGGNSVKLKSGNKNT---SRWGLRGVE 76 A LAA A + VT+YG + AG+E + A G + +++G S+ G +G E Sbjct: 7 ALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQE 66 Query: 77 DLGGGLKAVFRLESGIDLANGASDDGPDSIFARRATVGLKGKWGELSLGRNFTVTYDY-- 134 DLG GLKA++++E +A S G R++ +GLKG +G+L +GR +V D Sbjct: 67 DLGNGLKAIWQVEQKASIAGTDSGWG-----NRQSFIGLKGGFGKLRVGRLNSVLKDTGD 121 Query: 135 MLPFDPMGYAQNYSWATSSMATGGRKDGLFTRSSNAVRYDG-EFSGFKFGALYGFGNVPG 193 + P+D + +A + +VRYD EF+G Y + G Sbjct: 122 INPWDSKS----DYLGVNKIA---EPEARLI----SVRYDSPEFAGLSGSVQYALNDNAG 170 Query: 194 SMKTSSKYDFAVGYETGPFAAVVTFDRQNGAADSVTPADTVNYIQGIHAGLSYDFGNL-K 252 S Y Y+ G F + V + Q YD L Sbjct: 171 R-HNSESYHAGFNYKNGGFFVQYGGAYKR--HHQVQENVNIEKYQIHRLVSGYDNDALYA 227 Query: 253 TMAG-YRNYKRTFHTTAANQLSDMYWLGGSYQF-----TPTFSLIAAVYHQNIKGGTDAD 306 ++A ++ K + N ++ + + + TP S + D Sbjct: 228 SVAVQQQDAKLVEENYSHNSQTE---VAATLAYRFGNVTPRVSYAHGFKGSFDATNYNND 284 Query: 307 PTLVSVRAQYALSKRTVLYAAGAF 330 V V A+Y SKRT + + Sbjct: 285 YDQVVVGAEYDFSKRTSALVSAGW 308
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 43.7 bits (103), Expect = 1e-06 Identities = 51/344 (14%), Positives = 97/344 (28%), Gaps = 75/344 (21%) Query: 235 TAAGVTVGIITIGGVSQTLQDLKQFTSSNGYGTVSTQTVKTNGTGGSYTDDQDGQGEWDL 294 GV V ++ G DLK + T+ G +D G Sbjct: 39 RGRGVKVAVLD-TGCDADHPDLK--------ARIIGGRNFTDDDEGDPEIFKDYNGHGTH 89 Query: 295 DSQSIVGSAGGQVGKLVFYMADLNA---------AGNTGLTQAFNRAVSDNTAKVINVSL 345 + +I + V ADL + Q A+ +I++SL Sbjct: 90 VAGTIAATENENGVVGVAPEADLLIIKVLNKQGSGQYDWIIQGIYYAIEQK-VDIISMSL 148 Query: 346 GWCETDANADGTLDAEEQIFTTAAAQGQTFSVSSGDEGVYECNNRGYPDGSNYTVSWPAS 405 G + + A A ++G+EG + + +P Sbjct: 149 G-------GPEDVPELHEAVKKAVASQILVMCAAGNEGDGDDRTD--------ELGYPGC 193 Query: 406 SPHVLAIGGTTLYTTSAGAFSNETVWNEGLDSNGKLWATGGGVSTILPAPSWQSGSNRQL 465 V+++G ++ FSN + L A G + + +P Sbjct: 194 YNEVISVGAINFDRHAS-EFSNSN-------NEVDLVAPGEDILSTVP------------ 233 Query: 466 PDVAFDAAQSTGAYIYNYGQLQQIGGTSLAAPIFTGFWARLLAANGTGLGFPASNFYADI 525 G+ GTS+A P G A + + ++ Sbjct: 234 -----------------GGKYATFSGTSMATPHVAGALALIKQLANASFERDLTE--PEL 274 Query: 526 PSHPSLVRYDVVSGNNGYQGYGY-KAGTGWDLTTGFGSLNIANL 568 + + R + + +G G +L+ F + +A + Sbjct: 275 YAQ-LIKRTIPLGNSPKMEGNGLLYLTAVEELSRIFDTQRVAGI 317
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 115 bits (290), Expect = 4e-30 Identities = 81/398 (20%), Positives = 155/398 (38%), Gaps = 12/398 (3%) Query: 27 VALATLDTAIANTALPAIAADLHASPAASVWIINAYQLAMVATLLPFASLGDIVGHKRVY 86 + L+ + N +LP IA D + PA++ W+ A+ L + L D +G KR+ Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 87 VAGLAVFTLASL-GCSLASTLPMLTAARIVQGFGASAIMSVNVALIRGLFPAHRLGRGVG 145 + G+ + S+ G S +L AR +QG GA+A ++ + ++ P G+ G Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 146 FNALVVGVSFAVGPTIASLILSVAAWPWLFAVNVPLGVFALAVAIPSLPQTARGKHAFDP 205 +V + VGP I +I W +L + + + + + + L + R K FD Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVRIKGHFDI 201 Query: 206 VAALFNVITFASLIFALGEFAQRGPLSVVFAAAAVAFSFGWLLIRRQAGHPAPMLPVDLF 265 + + + + S+ F +V + ++ P + L Sbjct: 202 KGIILMSVGIVFFMLFTTSY------SISFLIVSVLSFL--IFVKHIRKVTDPFVDPGLG 253 Query: 266 RRPVFTLSALTAVCAFAAQGLAFVSLPFYFETVLHRSAVETGF-LMTPWSAIVALAAPIA 324 + F + L F +P+ + V S E G ++ P + V + I Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313 Query: 325 GRLSDRYPPGLLGAIGLALLSAGMVSLAALPVSPGVVDIGWRMMLCGAGFGFFQSPNLKA 384 G L DR P + IG+ LS ++ + L + + ++ G F ++ Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWF-MTIIIVFVLGGLSFTKTVISTI 372 Query: 385 LMSSAPPERSGGASGIIATARLIGQATGAALVALSFGI 422 + SS + +G ++ + + TG A+V I Sbjct: 373 VSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>PF06580#Sensor histidine kinase Length = 349 Score = 28.7 bits (64), Expect = 0.040 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 12/109 (11%) Query: 195 SIYLAIFGRTFVIGIAVTLFALLLGYPLAYWISTLSERRANLVMILVLIPFWTSVLVRVA 254 S+Y + + + IA++L L+L + +I + N+ I++ + + +V Sbjct: 32 SLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRV--LPACVVIGM 89 Query: 255 AWIV----------LLQSEGLINTALIGSGLISHPLTLLFNRVGVYISM 293 W V + ++ + T + +I + + + F +Y Sbjct: 90 VWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVVVTFMWSLLYFGW 138
>PF05272#Virulence-associated E family protein Length = 892 Score = 30.8 bits (69), Expect = 0.011 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 37 LTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 67 + L G G GK+T + L G +F + + Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDI 629
>PYOCINKILLER#Pyocin S killer protein signature. Length = 617 Score = 30.9 bits (69), Expect = 0.024 Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 18/177 (10%) Query: 9 LLAAVVSAAHAAAPAPAAASAASGAAPALTPQEARQALNVLENPRDRAQVETTLRAIAAV 68 L +S+ AA A+ AA A +E A + + E R AA+ Sbjct: 192 LFTEAISSLQIRMNTLTAAKASIEAAAANKAREQAAA-------EAKRKAEEQARQQAAI 244 Query: 69 GALSAPAVPASAAPATSGASAAAAPAALTSNGLASML---VRQGSRWATQIGNALQESLR 125 A + A+PA+ + + A A + LA + + R + + Sbjct: 245 RAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFA 304 Query: 126 SLLDIGSVGSWWHDKLVSADQRADLTRTLGILVAVLLPALIVEWLAKRLLRRALATV 182 SL W D+ + + A LG+ A L V A + +A TV Sbjct: 305 SLTYSSRTAEQWQDQTPDSVRYA-----LGMDAAKLGLPPSVNLNA---VAKASGTV 353
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 63.1 bits (153), Expect = 5e-14 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 16 ARGDETRQRIIEAAIELFGERGFAGASTREIAAMAGVNAPALQYYFENKEGVYRACVETI 75 ETRQ I++ A+ LF ++G + S EIA AGV A+ ++F++K ++ E Sbjct: 7 QEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELS 66 Query: 76 AEHGWQVFAPAVGHARAMLDGHASVDALIDAFI 108 + ++ + + ++ + Sbjct: 67 ESNIGELELEYQAKFPGDP--LSVLREILIHVL 97
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 129 bits (326), Expect = 1e-35 Identities = 56/370 (15%), Positives = 114/370 (30%), Gaps = 81/370 (21%) Query: 69 SMTAAPKVAGYVTDVYVRDNQPVKAGDPLVRLD-------VRQYQVALAQAQATV----- 116 S P V ++ V++ + V+ GD L++L + Q +L QA+ Sbjct: 96 SKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQI 155 Query: 117 ----------------------------------------DARRADIARAEADISQQRAN 136 + + E ++ ++RA Sbjct: 156 LSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAE 215 Query: 137 LEQADAQAKVSRINAQHASDEYTRYAPLAATGAETHERVADLKSTRDQAAATLAANNASI 196 A+ ++ ++ L A V + ++ +A L + + Sbjct: 216 RLTVLARINRYENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQL 275 Query: 197 AAARTQIASFTA---------------QLQQARAQLEAAQASAAQAQLDLDNTIVRSTLA 241 ++I S +L+Q + A+ + +++R+ ++ Sbjct: 276 EQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVS 335 Query: 242 GRVGDRTVR-VGQYVQPGTRLLTVVPVDSIYLV-ANFKETQIGNMRIGQPVELHVDALPD 299 +V V G V L+ +VP D V A + IG + +GQ + V+A P Sbjct: 336 VKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPY 395 Query: 300 ---GPLSGVVDSFAPGTGAQFALLPPENATGNFTKIVQRVPVRIRLAANARAQRMLLPGL 356 G L G V + + G ++ + N L G+ Sbjct: 396 TRYGYLVGKVKNINLDA-------IEDQRLGLVFNVIISIEENCLSTGN--KNIPLSSGM 446 Query: 357 SVTVDVDTRS 366 +VT ++ T Sbjct: 447 AVTAEIKTGM 456
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 86.9 bits (215), Expect = 2e-20 Identities = 66/400 (16%), Positives = 158/400 (39%), Gaps = 15/400 (3%) Query: 32 ALMATLDISITNSALPQIQGEIGATGTEGTWISTGYLMSEIVMIPLAAWLTRVFGLRNFL 91 + + L+ + N +LP I + W++T ++++ + + L+ G++ L Sbjct: 23 SFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLL 82 Query: 92 LTNSALFIAFSMMCGWSHS-LPMMIAGRIGQGFTGGALIPTAQTIIRTRLPLSQLPVGMT 150 L + S++ HS ++I R QG A ++ +P Sbjct: 83 LFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFG 142 Query: 151 LFGLIVLLGPLFGPVLGGWLAENVNWSWCFFLNLPVCLLLMALLVFGLPSDRPQWSAFFN 210 L G IV +G GP +GG +A ++WS + L +P+ ++ + L + + + Sbjct: 143 LIGSIVAMGEGVGPAIGGMIAHYIHWS--YLLLIPMITIITVPFLMKLL--KKEVRIKGH 198 Query: 211 ADWLGILGLAIGLSSLTVVLEEGQRERWFESQMIVTLSIVSFIGMVLIALSQRFAKRPIM 270 D GI+ +++G+ + +L F + ++ IVS + ++ R P + Sbjct: 199 FDIKGIILMSVGI--VFFML--------FTTSYSISFLIVSVLSFLIFVKHIRKVTDPFV 248 Query: 271 RLSLMRNPRYASVIVIVSAVGAGLYGVSYLLPQFLAIVAGYNAEQAGAIMLLSGLPAFLV 330 L +N + ++ + + G ++P + V + + G++++ G + ++ Sbjct: 249 DPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVII 308 Query: 331 MPILPRLLGKVDFRILVITGLLLFCLSCMLDISLTAQSVGHDFVWSQLIRGLAQMLAMMP 390 + +L + V+ + F L S ++ + Sbjct: 309 FGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSFTKTV 368 Query: 391 LNQASMAAVAREDSGDAAGLYNMARNLGGSIGLAIIGTVI 430 ++ +++ ++++G L N L G+AI+G ++ Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLL 408
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 49.8 bits (119), Expect = 9e-09 Identities = 33/213 (15%), Positives = 74/213 (34%), Gaps = 32/213 (15%) Query: 43 AATRVDVTEDLPGRVAAV-RVAEIRPQVSGIVQRRLFEQGTEVRAGQPLFQINPAPFKAE 101 +V++ G++ R EI+P + IV+ + ++G VR G L ++ +A+ Sbjct: 76 VLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEAD 135 Query: 102 MDTAAASLQRAQAALERAKVQ----------------TARFKPLVEADAISRQVYDDAVS 145 +SL +A+ R ++ F+ + E + + Sbjct: 136 TLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL--IKE 193 Query: 146 QRDQAAADVAQARATLARRQLDLKFATVEAPIAGRIDQALVTEGALVSSSDSQPMA---- 201 Q Q L +++ + TV A I + + V + L D + Sbjct: 194 QFSTWQNQKYQKELNLDKKRAER--LTVLARINRYENLSRVEKSRL---DDFSSLLHKQA 248 Query: 202 ----RIQQIDQVYVDVRQPAASLEALRDALASQ 230 + + + YV+ ++ + + S+ Sbjct: 249 IAKHAVLEQENKYVEAVNELRVYKSQLEQIESE 281 Score = 29.0 bits (65), Expect = 0.034 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 61 RVAEIRPQVSGIVQR-RLFEQGTEVRAGQPLFQINP 95 + + IR VS VQ+ ++ +G V + L I P Sbjct: 326 QASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVP 361
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1090 bits (2821), Expect = 0.0 Identities = 532/1028 (51%), Positives = 718/1028 (69%), Gaps = 7/1028 (0%) Query: 1 MAEFFIRRPVFAWVIALFIILTGLIAIPQLPVARYPSVAPPSVTITASYPGATPQTMNDG 60 MA FFIRRP+FAWV+A+ +++ G +AI QLPVA+YP++APP+V+++A+YPGA QT+ D Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 61 VLSLIERELSGVKNLLYFESSADTSGQAQITVTFKPGTNPEMAQVDVQNKIKSVEPRLPA 120 V +IE+ ++G+ NL+Y S++D++G IT+TF+ GT+P++AQV VQNK++ P LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 121 AVRQNGLIVESASSGFLMIVSLRSDNGRFDEGALADYMARSVSEELRRIDGVGRVLQFGS 180 V+Q G+ VE +SS +LM+ SDN + ++DY+A +V + L R++GVG V FG+ Sbjct: 121 EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180 Query: 181 ERAMRIWVDPQKLINFGLSMSDLTTAIGQQNVQIAPGSLGALPALPGQRVTVPLTAQGQL 240 + AMRIW+D L + L+ D+ + QN QIA G LG PALPGQ++ + AQ + Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 241 TTPEAFAKVVLRANADGSKVVLGDVARVELGSQNYTFVSRENNKPATLAGVQLAPGANAV 300 PE F KV LR N+DGS V L DVARVELG +NY ++R N KPA G++LA GANA+ Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 301 KTADAIRARMAELSKSMPSGMSYSIPLDTSPFVKISIEKVLHTLLEAMVLVFLVMYLFLQ 360 TA AI+A++AEL P GM P DT+PFV++SI +V+ TL EA++LVFLVMYLFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 361 NVRYTLIPAIVAPVAMLGTFTVMLLTGFSINVLTMFGMVLAIGIIVDDAIVVVENVERLM 420 N+R TLIP I PV +LGTF ++ G+SIN LTMFGMVLAIG++VDDAIVVVENVER+M Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLSPKDATSKAMKEITGAIIGVTLVLTAVFLPMAMASGSVGVIYKQFTLSMAVSILF 480 E+ L PK+AT K+M +I GA++G+ +VL+AVF+PMA GS G IY+QF++++ ++ Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 481 SALLALTLTPALCATMLKPIAAGHHE-KRGFFGWFNRRFDRLTKWYETRVGRLVGRTGRV 539 S L+AL LTPALCAT+LKP++A HHE K GFFGWFN FD Y VG+++G TGR Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540 Query: 540 MLVFVAISGALVLGFRSLPSSFLPDEDQGYFITSFLLPADATAERTHDVVKTLEKHL--A 597 +L++ I +V+ F LPSSFLP+EDQG F+T LPA AT ERT V+ + + Sbjct: 541 LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600 Query: 598 SRPAIQSSISVIGYGFSGQGSNAAINWSVMKDWKNRGGASTIEEGML--AQQAMAGVTEG 655 + ++S +V G+ FSGQ NA + + +K W+ R G E ++ A+ + + +G Sbjct: 601 EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660 Query: 656 TVMSLLPPAIDELGNSSGFSMRLEDRANQGAAALKAAEVKLLELAAQSKV-VTGVYPDSL 714 V+ PAI ELG ++GF L D+A G AL A +LL +AAQ + V P+ L Sbjct: 661 FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720 Query: 715 PAGTSIRLEIDRAKAQALGVSFTTLSDTLSTAMGSTYVNDFPNAGRMQQVIIQADAPARM 774 +LE+D+ KAQALGVS + ++ T+STA+G TYVNDF + GR++++ +QADA RM Sbjct: 721 EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRM 780 Query: 775 QIDNVMKLYVRNAAGGMVPLSEVVRPVWTDTPLQMVRFKGYPSARIAGNAAPGQSSGAAM 834 ++V KLYVR+A G MVP S W ++ R+ G PS I G AAPG SSG AM Sbjct: 781 LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840 Query: 835 AEMERLAAQLPPGFAVEWTGQSLQERQSASQAPMLMVLSMIVVFLVLAALYESWSIPLSV 894 A ME LA++LP G +WTG S QER S +QAP L+ +S +VVFL LAALYESWSIP+SV Sbjct: 841 ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900 Query: 895 MLVVPLGLIGAIGAVLLRGMPNDVFFKVGMITVIGLSAKNAILIVEFAKQLRE-EGKGLI 953 MLVVPLG++G + A L NDV+F VG++T IGLSAKNAILIVEFAK L E EGKG++ Sbjct: 901 MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960 Query: 954 EAAVQASKLRLRPILMTSLAFGLGVVPLMIATGASAETQHAIGTGVFGGMVTATVLAIFF 1013 EA + A ++RLRPILMTSLAF LGV+PL I+ GA + Q+A+G GV GGMV+AT+LAIFF Sbjct: 961 EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020 Query: 1014 VPVFFVFV 1021 VPVFFV + Sbjct: 1021 VPVFFVVI 1028 Score = 80.7 bits (199), Expect = 2e-17 Identities = 57/323 (17%), Positives = 124/323 (38%), Gaps = 17/323 (5%) Query: 719 SIRLEIDRAKAQALGVSFTTLSDTLSTA---MGSTYVNDFPNA-GRMQQVIIQADAPARM 774 ++R+ +D ++ + + L + + + P G+ I A R Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT--RF 240 Query: 775 Q-IDNVMKLYVR-NAAGGMVPLSEVVRPVWTDTPLQ--MVRFKGYPSARIAGNAAPGQS- 829 + + K+ +R N+ G +V L +V R V + R G P+A + A G + Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVAR-VELGGENYNVIARINGKPAAGLGIKLATGANA 299 Query: 830 ---SGAAMAEMERLAAQLPPGFAVEWT-GQSLQERQSASQAPMLMVLSMIVVFLVLAALY 885 + A A++ L P G V + + + S + + ++++VFLV+ Sbjct: 300 LDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFL 359 Query: 886 ESWSIPLSVMLVVPLGLIGAIGAVLLRGMPNDVFFKVGMITVIGLSAKNAILIVE-FAKQ 944 ++ L + VP+ L+G + G + GM+ IGL +AI++VE + Sbjct: 360 QNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419 Query: 945 LREEGKGLIEAAVQASKLRLRPILMTSLAFGLGVVPLMIATGASAETQHAIGTGVFGGMV 1004 + E+ EA ++ ++ ++ +P+ G++ + M Sbjct: 420 MMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479 Query: 1005 TATVLAIFFVPVFFVFVMSIQER 1027 + ++A+ P ++ Sbjct: 480 LSVLVALILTPALCATLLKPVSA 502
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 86.8 bits (215), Expect = 6e-22 Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 16/182 (8%) Query: 1 MTNSLILIAEDEPDISDILDAYLKHDGFRTYRVADGQAVLDMQPHLKPDLILLDVKMPRK 60 MT + IL+A+D+ I +L+ L G+ ++ + DL++ DV MP + Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 NGWDVLAELRRRD-NTPVVVLTAFDRDLDRLQALHAGADDYIVKPFNPAEVVARL-RAIL 118 N +D+L +++ + PV+V++A + + ++A GA DY+ KPF+ E++ + RA+ Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 119 RRSAAPPTLRMLRVGDLEIDTDSYLARVRTAGTEVPITLTLTEFRLLAHMARSPSRVFTR 178 P L + + S A ++ +R+LA + ++ + Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRS--AAMQEI------------YRVLARLMQTDLTLMIT 166 Query: 179 GE 180 GE Sbjct: 167 GE 168
>SUBTILISIN#Subtilisin serine protease family (S8) signature. Length = 326 Score = 44.8 bits (106), Expect = 6e-07 Identities = 51/243 (20%), Positives = 75/243 (30%), Gaps = 40/243 (16%) Query: 302 TDTDGTVEWNLDSQSIVGAAGG----SVKQVVFYVAPSMTLTAITAAYNKAVTDNVAKVI 357 T GT+ + +VG A +K V S I A+ V +I Sbjct: 88 THVAGTIAATENENGVVGVAPEADLLIIK--VLNKQGSGQYDWIIQGIYYAIEQKV-DII 144 Query: 358 NVSLGVCESSANSTGSQATDDTIFKQAVAQGQTFSVSAGDHGAYECASGTPSRSTYTVSE 417 ++SLG K+AVA +AG+ G + T + Sbjct: 145 SMSLG-------GPEDVPELHEAVKKAVASQILVMCAAGNEGDGDD-------RTDELGY 190 Query: 418 PATSPYVIAVGGTTLFTNTSTNAYNSEIVWNDPSWQPGT-VWST--GGGYSKYE----AA 470 P VI+VG + S PG + ST GG Y+ + A Sbjct: 191 PGCYNEVISVGAINF---DRHASEFSNSNNEVDLVAPGEDILSTVPGGKYATFSGTSMAT 247 Query: 471 P------TWQSSTLTGSTKRALPDVGFDADLRTGAILVVNGQTSDTLWGSGYLNNEGGTS 524 P S +R L + A L I + N S + G+G L Sbjct: 248 PHVAGALALIKQLANASFERDLTEPELYAQLIKRTIPLGN---SPKMEGNGLLYLTAVEE 304 Query: 525 LAA 527 L+ Sbjct: 305 LSR 307
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 53.9 bits (129), Expect = 2e-09 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 21/179 (11%) Query: 419 APEAFAQHRANAPHAEVPVPHPPGATHDTRQQAMQREHAAQETRAAAQQQQQQRAEMQRH 478 P + + A E PVP P AT + + + +Q Q Sbjct: 1007 VPSVPSNNEEIARVDEAPVPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNR 1066 Query: 479 DAAQQ-----REALQQRNAAQQQEHAQAQQRDEAQQQQRVEAQ--QRDEARQQQRS---- 527 + A++ + Q AQ + Q E ++ VE + + E + Q Sbjct: 1067 EVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVT 1126 Query: 528 --EAAQQQQRKEMQPHPEAPP--------REHAAPQPRQAAPEHAHAPHPAESHPPHES 576 + +Q+Q + +QP E +E + A E + P Sbjct: 1127 SQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTE 1185 Score = 42.0 bits (98), Expect = 7e-06 Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 38/188 (20%) Query: 419 APEAFAQHRANAPHAEVPVPHPPGATHDTRQQAMQREHAAQETRAAAQQ----------- 467 A E AQ+R A A+ V + + +E ET+ A Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 468 QQQQRAEMQRHDAAQQREALQQRNAAQ-QQEHAQAQQRDEAQQQQRVEAQQRDEARQQQR 526 + Q+ ++ + +Q ++ + A+ +E+ E Q Q A A++ Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSS 1177 Query: 527 --------------------------SEAAQQQQRKEMQPHPEAPPREHAAPQPRQAAPE 560 Q E P+ R P P Sbjct: 1178 NVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPA 1237 Query: 561 HAHAPHPA 568 + + Sbjct: 1238 TTSSNDRS 1245 Score = 36.2 bits (83), Expect = 4e-04 Identities = 20/158 (12%), Positives = 41/158 (25%), Gaps = 8/158 (5%) Query: 423 FAQHRANAPHAEVPVPHPPGATHDTRQQAMQREHAAQETRAAAQQQQQQRAEMQRHDAAQ 482 + + V T + Q + + E A + Sbjct: 978 YDLYNPEVEKRNQTVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPVPPPAPATPSETT 1037 Query: 483 QREALQQRNAAQQQEHAQAQQRDEAQQQQRV--EAQQRDEARQQQRSEAAQQQQRKEMQP 540 + A + ++ E + + Q + V EA+ +A Q +E AQ + Sbjct: 1038 ETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQT-NEVAQSGSETK--- 1093 Query: 541 HPEAPPREHAAPQPRQAAPEHAHAPHPAESHPPHESRE 578 E E + + + P S+ Sbjct: 1094 --ETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV 1129
>ADHESNFAMILY#Adhesin family signature. Length = 309 Score = 32.1 bits (73), Expect = 0.006 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 16/170 (9%) Query: 242 KEAEAIENEDEEAEEEEEEEEEEEDDGAAQASANAAQLEALKRASLEKFSQISE---WFD 298 A+ I + + +E E +L+ L + S +KF++I Sbjct: 149 IFAKNIAKQLSAKDPNNKEFYE------KNLKEYTDKLDKLDKESKDKFNKIPAEKKLIV 202 Query: 299 KMRRAFEKEGYKSKAYLKAQETIQSELMTIRFTARTVERLCDTLRAQVDEVRQVERQILH 358 AF Y SKAY I T ++ L + LR VE + Sbjct: 203 TSEGAF---KYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDD 259 Query: 359 IVVDKCGMPRSEFIARFPGSETDLDWAEKITAEGHPYSAVLSRNVPAIRE 408 + + AE+ EG Y +++ N+ I E Sbjct: 260 RPMKTV---SQDTNIPIYAQIFTDSIAEQGK-EGDSYYSMMKYNLDKIAE 305
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 384 bits (988), Expect = e-131 Identities = 139/383 (36%), Positives = 202/383 (52%), Gaps = 40/383 (10%) Query: 122 FDYVTLPLPYEWISHVLGHARGMAALDRVDGAAYAASIGEHGMIGNCEAMQQLFSTIRKV 181 +DY+ P + ++G A +A R S ++G AMQ+++ + ++ Sbjct: 99 YDYLPKPFDLTELIGIIGRA--LAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156 Query: 182 AKTDASVFISGESGTGKELTALAIHERSGRGKGPFVAINCGAIPHHLLQSELFGYERGAF 241 +TD ++ I+GESGTGKEL A A+H+ R GPFVAIN AIP L++SELFG+E+GAF Sbjct: 157 MQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAF 216 Query: 242 TGANQRRAGRIESANGGTLFLDEIGDMPVESQASLLRFLQEGKIERLGGQESIVVDVRII 301 TGA R GR E A GGTLFLDEIGDMP+++Q LLR LQ+G+ +GG+ I DVRI+ Sbjct: 217 TGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIV 276 Query: 302 SATHVDLDGAVEAGRFRADLYHRLCVLRIHEPPLRARGKDIDILAHYVLQKFKADSGRKI 361 +AT+ DL ++ G FR DLY+RL V+ + PPLR R +DI L + +Q+ + + G + Sbjct: 277 AATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQAEKE-GLDV 335 Query: 362 SGFTSAALDAMRRYEWPGNVRELINRVRRAIVMAESRLLTPHDLGLDTPGET-------- 413 F AL+ M+ + WPGNVREL N VRR + ++T + + E Sbjct: 336 KRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKA 395 Query: 414 -----------------------------EPVTLEQARALAERTAIENALLRNDHRINKA 444 ++ A E I AL KA Sbjct: 396 AARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKA 455 Query: 445 AAELGISRVTLYRMMIEHGLNDH 467 A LG++R TL + + E G++ + Sbjct: 456 ADLLGLNRNTLRKKIRELGVSVY 478
>INFPOTNTIATR#Macrophage infectivity potentiator signature. Length = 233 Score = 92.7 bits (230), Expect = 1e-26 Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Query: 3 VITTESGLKYEDLTEGTGAEAQAGKTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62 ++ SGL+Y+ + GTGA+ TV+V YTG L DG FDS++ P F + V Sbjct: 121 IVVLPSGLQYKIIDAGTGAKPGKSDTVTVEYTGTLIDGTVFDSTEKAGKPATFQVS--QV 178 Query: 63 IKGWDEGVQGMKVGGVRRLTIPPQLGYGPRGAGGVIPPNATLVFEVELLDV 113 I GW E +Q M G + +P L YGPR GG I PN TL+F++ L+ V Sbjct: 179 IPGWTEALQLMPAGSTWEVFVPADLAYGPRSVGGPIGPNETLIFKIHLISV 229
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 44.6 bits (105), Expect = 2e-08 Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 80 ITSLVVDESCRGQGVGGALIAAAHSWFESVGCVKLEVTSGDHRLDAHRFYARYGF 134 I + V + R +GVG AL+ A W + L + + D + A FYA++ F Sbjct: 92 IEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHF 146
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 132 bits (334), Expect = 4e-36 Identities = 82/399 (20%), Positives = 156/399 (39%), Gaps = 21/399 (5%) Query: 30 LDVTIVNIALAHLAADLHLPVAGLQWVVDAYTLAFAVLMLSAGALGDRFGTRRLYVAGLL 89 L+ ++N++L +A D + P A WV A+ L F++ G L D+ G +RL + G++ Sbjct: 28 LNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGII 87 Query: 90 LFAFASLACGAAVAPA-MLIAARALQGVGAAAMLPNSLALLNDACRHDPRLRARAVSGWT 148 + F S+ + +LI AR +QG GAAA + ++ R +A Sbjct: 88 INCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYI--PKENRGKAFGLIG 145 Query: 149 AAGSIAIAAGPVVGGLLIAAWGWRGIFLVNLPLCAAGLAATFAWVPARREQAAPARSTRS 208 + ++ GP +GG++ W + L+ + R Sbjct: 146 SIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKE-------VRIKGH 198 Query: 209 LDPRGQFIAIAMLTVLTGAVIEWRPLGFTHPVVAGGFVLAALAALAFVAVESRTATPMLP 268 D +G + + + FT +++ L+ L FV + P + Sbjct: 199 FDIKGIILMSVGIVFF---------MLFTTSYSISFLIVSVLSFLIFVKHIRKVTDPFVD 249 Query: 269 LSLFRHPAFSTAVLFGICVNLTYYGTVFVLALYLQRARGESALQAGLAFL-PLTGGFLLS 327 L ++ F VL G + T G V ++ ++ S + G + P T ++ Sbjct: 250 PGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIF 309 Query: 328 NLASGRVVARHGPRVPMVAGALVAALGYGSLHFVDAATPLGVLLVPFLLIPSGMGFAVPA 387 G +V R GP + G ++ + + F+ T + + + + G+ F Sbjct: 310 GYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSW-FMTIIIVFVLGGLSFTKTV 368 Query: 388 MTTAVLASVAPERAGIASAVLNTARQAGGAIGVAAFGAL 426 ++T V +S+ + AG ++LN G+A G L Sbjct: 369 ISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGL 407
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 34.9 bits (80), Expect = 6e-04 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 1/158 (0%) Query: 53 LDSIARDFGVSQAAVGGVITATQLGCALALLFVVPLGDLLNRKRLIAVQLVLLSAACIGV 112 L IA DF A+ V TA L ++ L D L KRL+ +++ + Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 113 ATAPTRGALLAGMVAIGLLGTAMTQGLIACSAA-LVGAGERGRVVGAAQGGVVVGLLAAR 171 + +LL I G A L+ A + RG+ G V +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGP 156 Query: 172 SLAGVVTDIAGWRAVYLVSGALAIAMLVVLSRLLPDMR 209 ++ G++ W + L+ I + ++ L ++R Sbjct: 157 AIGGMIAHYIHWSYLLLIPMITIITVPFLMKLLKKEVR 194
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 88.3 bits (219), Expect = 9e-22 Identities = 91/381 (23%), Positives = 132/381 (34%), Gaps = 66/381 (17%) Query: 14 LLTASHAAHATEVTLYG----LFDTSLTVVWNADAQGRNLVGLGNGNLLGNRFGVKGAED 69 L A A +VTLYG +TS +V N G G +L G++ G KG ED Sbjct: 9 TLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDL-GSKIGFKGQED 67 Query: 70 LGGGLKAIFTLENGFNPNTGALGQGNRMFGRQAFVGLESARWGTLTLGRQYDALADV--- 126 LG GLKAI+ +E G + RQ+F+GL +G L +GR L D Sbjct: 68 LGNGLKAIWQVEQ----KASIAGTDSGWGNRQSFIGL-KGGFGKLRVGRLNSVLKDTGDI 122 Query: 127 -AWPITGDFYFGSVYATPGDVDNYDTSSRTDNAVKYTSPVVGGFQFVGMYALGGVAGKSG 185 W D+ + A P + S V+Y SP G YAL AG+ Sbjct: 123 NPWDSKSDYLGVNKIAEP---EARLIS------VRYDSPEFAGLSGSVQYALNDNAGRHN 173 Query: 186 AGQTWSAGLSYNHGPFDAAGGYYHAANRASLANGVRTGWNGTSDGTFDGSLVNGGYISAK 245 +++ AG +Y +G F G + + N + + + GY Sbjct: 174 -SESYHAGFNYKNGGFFVQYGG-------AYKRHHQVQENVNIE-KYQIHRLVSGY-DND 223 Query: 246 SIGIARGALRYTFAPFTIGIDYSNAQYKADAMSAFRSTQKYDTARGFFNYQATASLLVGV 305 ++ + + N+Q + A A+R F N S G Sbjct: 224 ALYASVAVQQQDAKLVEENYS-HNSQTEVAATLAYR----------FGNVTPRVSYAHGF 272 Query: 306 GYSYTKARGDTSATYHQVSAGADYVLSKRTDLYAVGAWQRANGEQRTLDGGTQAAQASIG 365 S+ + Y QV GA+Y SKRT W + Sbjct: 273 KGSFDATNYNN--DYDQVVVGAEYDFSKRTSALVSAGWLQEG------------------ 312 Query: 366 SYGYGGTRTQGIVNLGLRHRF 386 +GLRH+F Sbjct: 313 --KGESKFVSTAGGVGLRHKF 331
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.8 bits (202), Expect = 3e-20 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 1/135 (0%) Query: 2 RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGWT 61 IL+ +D+ L + L+ AGY V + T + DL+V DV++P ++ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 LLQNLR-RSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120 LL ++ PVL ++A++ +K E GA DYL KPFD EL I L + Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 RDSNTLRVADLELDL 135 R S + + L Sbjct: 125 RPSKLEDDSQDGMPL 139
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 819 bits (2116), Expect = 0.0 Identities = 234/1065 (21%), Positives = 433/1065 (40%), Gaps = 62/1065 (5%) Query: 5 LIRFAIAHRWLVMLAIAAVAALGVFSYQRLPIDAVPDITNVQVQINTSAPGYSPLEAEQR 64 + F I + + G + +LP+ P I V ++ + PG + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 65 ITYPVETVMAGLPGLEQTRSIS-RYGLSQVTVIFKDGTDIYFARQLVNERIQEAKDKLPP 123 +T +E M G+ L S S G +T+ F+ GTD A+ V ++Q A LP Sbjct: 61 VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120 Query: 124 GIAPAMGPTSTGLGEIYLWTVEADANARKPDGTRYTAADLRELQDWVVRPQLRNVRGVTE 183 + YL D T D+ + V+ L + GV + Sbjct: 121 EVQQQGISVEKSSS-SYLMVA-----GFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGD 174 Query: 184 VNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALERNNDNVGAGYI------EKRGEQYL 237 V G R+ + L Y LT DV+ L+ ND + AG + + Sbjct: 175 VQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNAS 233 Query: 238 VRVPGQARTVDDIANIVL-TNVGGVPVRMKDVGVVDIGRELRTGAATSNGEEVVLGTVFM 296 + + + ++ + L N G VR+KDV V++G E A NG+ + + Sbjct: 234 IIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKL 293 Query: 297 LMGENSRTVSKAVAAKMEDVNRTLPAGVKAIPVYDRTVLVEKAVATVKKNLLEGAVLVIA 356 G N+ +KA+ AK+ ++ P G+K + YD T V+ ++ V K L E +LV Sbjct: 294 ATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFL 353 Query: 357 VLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANLMSLG--ALDFGIIVDGAVVIV 414 V++LFL N+RA LI + +P+ +L TF + S N +++ L G++VD A+V+V Sbjct: 354 VMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVV 413 Query: 415 ENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALIFGQLIIMVVYLPIFALTGVEG 474 EN R + + + + + AL+ +++ V++P+ G G Sbjct: 414 ENVERVMMEDKLP---------PKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTG 464 Query: 475 KMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVE---EKENRLMGWARRA------ 525 ++ +IT+V A+A ++++ + PA A + E + GW Sbjct: 465 AIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVN 524 Query: 526 -YEPVLAAFMTRPARVMIGAGAIVLVTLGLATRLGSEFIPSLNEGDLAVSALRIPGTSLS 584 Y + + R ++ IV + L RL S F+P ++G G + Sbjct: 525 HYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQE 584 Query: 585 QSVE-MQKSIEKTLKARFPEIERVFARTGTAEIAADPMPPNLSDGYIMLKPADTWPDPKK 643 ++ + + + + LK +E VF G + N ++ LKP + + Sbjct: 585 RTQKVLDQVTDYYLKNEKANVESVFTVNG---FSFSGQAQNAGMAFVSLKPWEERNGDEN 641 Query: 644 PRDRLVREIEEALAELP-GNAYEFSQPIQLRFNELISGVRSDVA-VKIFGDDMAVLNQTG 701 + ++ + L ++ G F+ P EL + D + G L Q Sbjct: 642 SAEAVIHRAKMELGKIRDGFVIPFNMP---AIVELGTATGFDFELIDQAGLGHDALTQAR 698 Query: 702 EQIAAALQKVPGA-SEVKVEQTTGLPVLTVNLDRDKLARYGVSVADLQDSVAAAVGGQKA 760 Q+ + P + V+ + +D++K GVS++D+ +++ A+GG Sbjct: 699 NQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYV 758 Query: 761 GTLFQGDRRFDIVVRLPDELRSDIEAIKRLPIALPAPAAGASAPLAAAPYVPLAELATID 820 R + V+ + R E + +L + A VP + T Sbjct: 759 NDFIDRGRVKKLYVQADAKFRMLPEDVDKLYV-----------RSANGEMVPFSAFTTSH 807 Query: 821 VAPGPNQISREDGKRRVVVSANVRGRDVGSFVADAREQLQQ-DVRVPAGYWVSWGGQFEQ 879 G ++ R +G + + G+ DA ++ ++PAG W G Q Sbjct: 808 WVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPAGIGYDWTGMSYQ 864 Query: 880 LQSASERLKLVVPLALFMVFVLLFVMFNNVKDGLLVFTGIPFALSGGVVSLWLRGIPLSI 939 + + + +V ++ +VF+ L ++ + + V +P + G +++ L + Sbjct: 865 ERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDV 924 Query: 940 TAAVGFIALSGVAVLNGLVMISFIRNLRD-EGMPLDAAVHDGALTRLRPVLMTALVASLG 998 VG + G++ N ++++ F ++L + EG + A RLRP+LMT+L LG Sbjct: 925 YFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILG 984 Query: 999 FLPMAFATGTGAEVQRPLATVVIGGILSSTALTLLVLPVLYRVSH 1043 LP+A + G G+ Q + V+GG++S+T L + +PV + V Sbjct: 985 VLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIR 1029 Score = 87.2 bits (216), Expect = 2e-19 Identities = 76/532 (14%), Positives = 154/532 (28%), Gaps = 56/532 (10%) Query: 2 FERLIRFAIAHRWLVMLAIAAVAALGVFSYQRLPIDAVPDITNVQVQINTSAPGYSPLEA 61 + + + +L A + A V + RLP +P+ P + E Sbjct: 526 YTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQER 585 Query: 62 EQRITYPVETVMAGLPGLEQTRSISRYGLSQ---------VTVIFKDGTDIYFARQLVNE 112 Q++ V + G S V K + Sbjct: 586 TQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEA 645 Query: 113 RIQEAKDKLPP----GIAPAMGPTSTGLGEIYLWTVEADANARKPDGTRYTAADLRELQD 168 I AK +L + P P LG A + L Sbjct: 646 VIHRAKMELGKIRDGFVIPFNMPAIVELG---------TATGFDFELIDQAGLGHDALTQ 696 Query: 169 WV---------VRPQLRNVRGVTEVNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALER 219 L +VR ++ ++++ + K + G++L+D+ + + Sbjct: 697 ARNQLLGMAAQHPASLVSVRPNGLEDT-----AQFKLEVDQEKAQALGVSLSDINQTIST 751 Query: 220 NNDNVGAGYIEKRGEQY--LVRVPGQAR-TVDDIANIVLTNVGGVPVRMKDVGVVDIGRE 276 RG V+ + R +D+ + + + G V Sbjct: 752 ALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWV-- 809 Query: 277 LRTGAATSNGEEVVLGTVFMLMGENSRTVSKAVAAKMEDVNRTLPAGVKAIPVYDRTVLV 336 G+ + ++ + T S A ME++ LPAG+ + Sbjct: 810 --YGSPRLERYNGLP-SMEIQGEAAPGTSSGDAMALMENLASKLPAGI-GYDWTGMSYQE 865 Query: 337 EKAVATVKKNLLEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANLM 396 + + V+V L + + LV+PL ++ ++ Sbjct: 866 RLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVY 925 Query: 397 SLGAL--DFGIIVDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALIF 454 + L G+ A++IVE G+ + A + R ++ Sbjct: 926 FMVGLLTTIGLSAKNAILIVE----FAKDLMEKEGKGV-----VEATLMAVRMRLRPILM 976 Query: 455 GQLIIMVVYLPIFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALF 506 L ++ LP+ G + + I V+ + +A +L + F+P + Sbjct: 977 TSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVI 1028
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 53.7 bits (129), Expect = 8e-10 Identities = 54/361 (14%), Positives = 115/361 (31%), Gaps = 42/361 (11%) Query: 83 DGKPVDKG---VTVSGTLVRYDRTHAPLRFDAAGQKFVSAQSIAKPHVFDATIDVKAGND 139 +G+ V KG + ++ D A + Q +++ + ++K ++ Sbjct: 114 EGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDE 173 Query: 140 AASFPFARADGAIALTDAQLATSRIALAKAGPAQIATPFQLPGEIKFNEDRTAHVVPRVA 199 F L L + + + Q +L + K E T Sbjct: 174 PY---FQNVSEEEVLRLTSLIKEQFSTWQNQKYQK----ELNLDKKRAERLTVLARINRY 226 Query: 200 GIVEQVSVSLGQNVAKGQVLA---VIASTDLADRRSELLTAERRLS---GARATYERERT 253 E +S + L IA + ++ ++ + A L E E Sbjct: 227 ---ENLSRVEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEIL 283 Query: 254 LWKERIS-AEQDYQQ-AQVQLREAEIAVQNARQKLAALNAPVGAGALNRYELRAPFAGTI 311 KE Q ++ +LR+ + +LA +RAP + + Sbjct: 284 SAKEEYQLVTQLFKNEILDKLRQTTDNIGLLTLELAKNEE-----RQQASVIRAPVSVKV 338 Query: 312 VE-KHATPGEAI-AADASMFVISDLSTVWAEMAVPAQRLNDVRVGRDATVSATAFESRSS 369 + K T G + A+ M ++ + T+ V + + + VG++A + AF Sbjct: 339 QQLKVHTEGGVVTTAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRY 398 Query: 370 GPI----AYVG--SLLGEQTRT-APARVVLP-------NPDRVWRPGMFVNVSVDAGRQA 415 G + + ++ ++ + + N + GM V + G ++ Sbjct: 399 GYLVGKVKNINLDAIEDQRLGLVFNVIISIEENCLSTGNKNIPLSSGMAVTAEIKTGMRS 458 Query: 416 V 416 V Sbjct: 459 V 459 Score = 38.7 bits (90), Expect = 5e-05 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 11/132 (8%) Query: 181 PGEIKFNEDRTAHVVPRVAGIVEQVSVSLGQNVAKGQVLAVIASTDLADRRSELLTAERR 240 G++ + + P IV+++ V G++V KG VL + + ++ L + Sbjct: 87 NGKLTHSGRSKE-IKPIENSIVKEIIVKEGESVRKGDVLLKLTALGA---EADTLKTQSS 142 Query: 241 LSGARATYERERTLWKE-------RISAEQDYQQAQVQLREAEIAVQNARQKLAALNAPV 293 L AR R + L + + + V E +++ + Sbjct: 143 LLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQK 202 Query: 294 GAGALNRYELRA 305 LN + RA Sbjct: 203 YQKELNLDKKRA 214
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 55.0 bits (132), Expect = 1e-11 Identities = 24/179 (13%), Positives = 48/179 (26%), Gaps = 15/179 (8%) Query: 22 RAAERRDALIRAATRVFGTVGFRKATVRSICQEAKLNDRYFYAAFDSTEDLLRCTYLHHA 81 A E R ++ A R+F G ++ I + A + Y F DL + Sbjct: 8 EAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSE 67 Query: 82 QQLHDAVAQAVAARGGELRERVDAGLAAFFAFLRDPCAARVLLLEVMGVSADT------- 134 + + + A G+ + L R LL+E++ + Sbjct: 68 SNIGELELEYQAKFPGDPLSVLREILIHVLESTVTE-ERRRLLMEIIFHKCEFVGEMAVV 126 Query: 135 ----DMTYQRMLIDFGKLIMAIGAPGEAVTPAERTEQRLIGLALVGAMTNVGAAWLLTD 189 + + R + + G ++ + WL Sbjct: 127 QQAQRNLCLESYDRIEQTLKHCIEAKMLPAD---LMTRRAAIIMRGYISGLMENWLFAP 182
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 66.6 bits (162), Expect = 6e-15 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 2/193 (1%) Query: 2 KGFSGKVAAITGAGSGMGRSLAVELARRGCEVALADVNETGLAGTAAACAQHGVRVSTRR 61 KG GK+A ITGA G+G ++A LA +G +A D N L ++ Sbjct: 4 KGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFP 63 Query: 62 LDVADRDAVFAWADFVRAEHGKVNLIFNNAGVSLAASAETARLADLEWIVGINFWGVVHG 121 DV D A+ + E G ++++ N AGV + + E +N GV + Sbjct: 64 ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123 Query: 122 TQAFLPHLRASGDGHVVNTSSLFGLVAMPTQSAYNATKFAVRGFTEALRMELELDGAPVS 181 +++ ++ G +V S V + +AY ++K A FT+ L +EL + Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELA--EYNIR 181 Query: 182 ATCVHPGGVATSI 194 V PG T + Sbjct: 182 CNIVSPGSTETDM 194
>cloacin#Cloacin signature. Length = 551 Score = 34.3 bits (78), Expect = 0.001 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 248 GTLTGGLGGGSSSGSGGTSGTSSGGPLAPITGLLGTVTGALGGIGSSGTSGTGGTSGTGG 307 G G+GGG+S GSG +S + G G + G SG GG +GG Sbjct: 23 GPTGLGVGGGASDGSGWSSENNPWG---------GGSGSGIHWGGGSGHGNGGGNGNSGG 73 Query: 308 TSGTGGAGLGGLLAPVTNLVNALTPLGASLTGTVTTPGGNLSGTLGGVLTS 358 SGTGG L + APV AL+ GA V+ G LS + ++ + Sbjct: 74 GSGTGG-NLSAVAAPVAFGFPALSTPGAGGLA-VSISAGALSAAIADIMAA 122 Score = 30.8 bits (69), Expect = 0.011 Identities = 28/115 (24%), Positives = 43/115 (37%) Query: 165 GGVTLLGTPLNGLLSTLGSGLGLAGTKVGGATDNPVGAGLGGVVTQLGNTVTSTGGLVHD 224 G +NG + LG G G + + +NP G G G + G + GG + Sbjct: 11 TGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGN 70 Query: 225 NNAGSSSSGTGGSNPLAPITGLLGTLTGGLGGGSSSGSGGTSGTSSGGPLAPITG 279 + GS + G + G T G GG + S S G + +A + G Sbjct: 71 SGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKG 125
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 64.1 bits (156), Expect = 3e-13 Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 2/138 (1%) Query: 40 VPEMPSALHTSPAMVQLTLSVYMVVLGLGQLMFGPLSDRLGRRPVLLGGALLFSVASLAL 99 +P++ + + PA + +M+ +G ++G LSD+LG + +LL G ++ S+ Sbjct: 37 LPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG 96 Query: 100 AMAGSG-GVFVALRLLQALGASAALVATFATVRDVYADRPEGSTLYSQFGAILAFVPALG 158 + S + + R +Q GA AA A V Y + + G+I+A +G Sbjct: 97 FVGHSFFSLLIMARFIQGAGA-AAFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVG 155 Query: 159 PMLGAGIAHGFGWRAIFM 176 P +G IAH W + + Sbjct: 156 PAIGGMIAHYIHWSYLLL 173
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 68.3 bits (167), Expect = 1e-15 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 2 IRVILADDHAVMRDGLRHILERAGGFEIVGEASDGSGTLALAERAAADVLLLDLSMPAPT 61 +++ADD A +R L L RAG V S+ + D+++ D+ MP Sbjct: 4 ATILVADDDAAIRTVLNQALSRAG--YDVRITSNAATLWRWIAAGDGDLVVTDVVMPDEN 61 Query: 62 GIELIRLVKRRAPSLRTLVLTMHAETQYAARAFKAGATGYLTKDSATAELVEAVGK 117 +L+ +K+ P L LV++ A +A + GA YL K EL+ +G+ Sbjct: 62 AFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGR 117
>GPOSANCHOR#Gram-positive coccus surface protein anchor signature. Length = 539 Score = 36.2 bits (83), Expect = 3e-04 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 5/109 (4%) Query: 303 RALAGARYQHLLVVQKSAQLNDANERLEQRVAARTAQ---LSASNRDLRREVEERVRAER 359 +AL GA K L LE A Q L+A+ + LRR+++ A++ Sbjct: 267 KALEGAMNFSTADSAKIKTLEAEKAALEAEKADLEHQSQVLNANRQSLRRDLDASREAKK 326 Query: 360 ALQASREELREIAAISASAREAEQRRI--ARELHDELAQTLATLKNDLE 406 L+A ++L E IS ++R++ +R + +RE +L L+ + Sbjct: 327 QLEAEHQKLEEQNKISEASRQSLRRDLDASREAKKQLEAEHQKLEEQNK 375
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.7 bits (233), Expect = 2e-24 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Query: 2 RILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGFT 61 ILV +DDA I + L+R G+ V + ++ AT + DLVV D +P + F Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFD---YRELDARVQALLRR 118 +L ++ + PVL+++A++ + GA DYL KPFD + R A +R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 119 NSGHANDVLTLGGLVIDRSSRLAEL 143 D G ++ RS+ + E+ Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEI 149
>PF06580#Sensor histidine kinase Length = 349 Score = 30.2 bits (68), Expect = 0.016 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 24/102 (23%) Query: 367 NALLHGHA---DDIVVSVATMGNADQAVTLTVTDNGRGMPREHWDAALQPFVRIAPDGSE 423 N + HG A + + + VTL V + G + Sbjct: 266 NGIKHGIAQLPQGGKILLKGTKDNGT-VTLEVENTGSLALK------------------N 306 Query: 424 RRTGSGLGLAIVQEVMKA-HGGRVGFAFPDA-GGFAVVLTFP 463 + +G GL V+E ++ +G + G ++ P Sbjct: 307 TKESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 30.1 bits (67), Expect = 0.021 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 452 LPLPGAVPSATHSAESAPQSPSSADAAPQPASTPAAPSAPATQPHPE 498 +P P P + + + P S A PA+ PA P T+P+PE Sbjct: 310 IPRPDLTPGSAEAPNAQPLPEVSP--AENPANNPAPNENPGTRPNPE 354
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 87.6 bits (217), Expect = 3e-22 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 2 RILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGFE 61 IL+ +D+ + + L + L+ A Y V + N D DL+V DV++P + F+ Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLRRLRA-QKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 +L R++ + PVL+++A+ + E GA DYL KPF E + I L R Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 121 NVR 123 Sbjct: 125 RPS 127
>PF06580#Sensor histidine kinase Length = 349 Score = 37.5 bits (87), Expect = 9e-05 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 38/187 (20%) Query: 291 IEECERLQRMIENM--LFLARTDNARQHLKTVELDAGSELRRLASYFHA----LADEAGV 344 +E+ + + M+ ++ L + ++ EL + SY D Sbjct: 187 LEDPTKAREMLTSLSELMRYSLRYSNARQVSLA----DELTVVDSYLQLASIQFEDRLQF 242 Query: 345 HIDVHGEAPVVADATLFRRAVSNLASNALEHA----EAASTIELAVSTQGGYAVVEVTNR 400 + P + D + V L N ++H I L + G +EV N Sbjct: 243 ENQI---NPAIMDVQVPPMLVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENT 299 Query: 401 GVAIPPEQVERIFERFYRIDSSRHGAARNAGLGLAIVKSIIELHRGK---VEVASRDGRT 457 G E + G GL V+ +++ G ++++ + G+ Sbjct: 300 GSLALKNTKE------------------STGTGLQNVRERLQMLYGTEAQIKLSEKQGKV 341 Query: 458 TFALYFP 464 + P Sbjct: 342 NAMVLIP 348
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 44.0 bits (104), Expect = 7e-07 Identities = 65/358 (18%), Positives = 128/358 (35%), Gaps = 26/358 (7%) Query: 47 GASATTIGLIEGIAEATSPVVKVFSGTLSDYLRNRKWLAVAGYALGALSKPLFAIAPTIG 106 G++ + G LSD R+ + + A A+ + A AP + Sbjct: 39 NDVTAHYGILLALYALMQFACAPVLGALSDRF-GRRPVLLVSLAGAAVDYAIMATAPFLW 97 Query: 107 VVVTARIVDRVGKGIRGAPRDALVADVTPVHLRGAAYGLRQSLDTVGAFLGPLLAVAIML 166 V+ RIV + G GA A +AD+T R +G + G GP+L L Sbjct: 98 VLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLG---GL 153 Query: 167 MWRDDFRLAFWLAVIPGVLAVALLAVGIDEPARAPGEKRVNPIRREVVAQLGARYWWVVA 226 M F+ A L + E + P+RRE + A + W Sbjct: 154 MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGER----RPLRREAL-NPLASFRWARG 208 Query: 227 VGGV-------FVLARFSEAFLVLRAMGS----GVPVALVPLVMVAMNVVYAL-SAYPFG 274 + V F++ + L + + + + A ++++L A G Sbjct: 209 MTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITG 268 Query: 275 KLADTTSHTKLMVVGLALLIAADLVLAHGAHWPTVLVGVALWGLHMGMTQGLLAMMVAQA 334 +A + +++G+ ++LA + L G+ L M+++ Sbjct: 269 PVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLAS-GGIGMPALQAMLSRQ 327 Query: 335 APAELRGTAFGVFNLISGIVTLVSSVVAGVLWDRAGAAATFYAGAIFSAATIVLLVCV 392 E +G G ++ + ++V ++ ++ A+ T + G + A + L+C+ Sbjct: 328 VDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA---ASITTWNGWAWIAGAALYLLCL 382 Score = 29.4 bits (66), Expect = 0.027 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 241 LVLRAMGSGVPVALVPLVM--------VAMNVVYALSAYPF---------GKLADTTSHT 283 + L A+G G+ + ++P ++ V + L+ Y G L+D Sbjct: 14 VALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRR 73 Query: 284 KLMVVGLALLIAADLVLAHGAHWPTVLVGVALWGLHMGMTQGLLAMMVAQAAPAELRGTA 343 +++V LA ++A + +G + G+ G T + +A + R Sbjct: 74 PVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARH 132 Query: 344 FGVFNLISGIVTLVSSVVAGVLWDRAGAAATFYAGAIFSAATIVL 388 FG + G + V+ G++ A F+A A + + Sbjct: 133 FGFMSACFGFGMVAGPVLGGLMGG-FSPHAPFFAAAALNGLNFLT 176
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 28.7 bits (64), Expect = 0.043 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 204 IVMPVILAQMLRKRLLANGQAAFDAAMTRIGP---WSIAALLATLVLLFAFQGEAILKQP 260 I++ ++ K +A A R+ P S+A +L L L + + + Sbjct: 942 ILIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 1001 Query: 261 LVIALL 266 + I ++ Sbjct: 1002 VGIGVM 1007
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 71.8 bits (176), Expect = 6e-15 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 4/141 (2%) Query: 770 RVLFVDDNPVNRSLVHDQLDVLGYRADVASSVAEALDLVERHDYAIVMTDLNMPGLDGYA 829 +L DD+ R++++ L GY + S+ A + D +V+TD+ MP + + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 830 LARMLRERGRALPILAVTAHAEPDEMRLSKEAGIDEIVTKP----TSLRSLEQAIAKYAG 885 L +++ LP+L ++A + E G + + KP + + +A+A+ Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 886 PWRPGRAIPPASASTRGPLPR 906 G Sbjct: 125 RPSKLEDDSQDGMPLVGRSAA 145
>PRTACTNFAMLY#Pertactin virulence factor family signature. Length = 910 Score = 87.4 bits (216), Expect = 2e-19 Identities = 205/939 (21%), Positives = 324/939 (34%), Gaps = 99/939 (10%) Query: 203 APAVYMQGNNDTLVNSGTIQ--TTGTATSGGSVDAVVSNTLGSSFTATITNQAGGRIISN 260 APA + NN ++V +G Q + G V T+ S QA G ++ N Sbjct: 29 APAAHADWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVS-----GRQAQGILLEN 83 Query: 261 NGIGVRSTNGATTITNAGLIQGGGGTAIQGGNGNVTLILQTGSQIVGTANGGAGTNTVTL 320 ++ NG ++T++G + G G L + + + L Sbjct: 84 PAAELQFRNG--SVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIAL 141 Query: 321 QGTGTASNAFTNFQSLTMAGADWTWAGTG-TFSTALVQSGTLNLTGTLGTTTASVVATVN 379 G + A +L AG G T + + G L++ + + Sbjct: 142 YVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRV 201 Query: 380 AGATLQANA---SNLPLSVTDNGLVRFQQDSAGTYTGTISGSGAVEKTGAGTLTLTPSAA 436 A S P +V+ G D G +G A++ GA + Sbjct: 202 VLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQ--GAVVHLQRATIR 259 Query: 437 GGNTYSGGTTITQGTLSVAADNALGAASGPLTFNG--GTLQLGSAFDLAASRAMSITSNN 494 G+ +GG A G +G G GS+ +LA S + Sbjct: 260 RGDAPAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEA--PEL 317 Query: 495 GTIDTQGFNSTITQNITGTGGLTKLGAGTLTLNGANTYAGGTALNAGTLVVGDAAHASAA 554 G G + +T G L+ + GA +A A + TL G A A Sbjct: 318 GAAIRVGRGARVT---VSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKAL 374 Query: 555 LGGGGP----VTVASGTMLGGYGGVTGNVTNNGTLSVANALASLASGAT----------- 599 L P +T+ G G V + + S+ +LAS A Sbjct: 375 LYRVLPEPVKLTLTGGADAQG-DIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSL 433 Query: 600 ----GNFRINGNLTNAGLVQLGGSG---------VGNTLTVAGNYVGQNATLALNTTLAG 646 + + N +N G ++L G G + N + + +N Sbjct: 434 SIDNATWVMTDN-SNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFA-- 490 Query: 647 DGAPSDKLVVSGGTASGSSTLKVTNVGGAGAQTTGDGIQVVQATNGATTSANAFSLSGGT 706 D SDKLVV ASG L V N +G++ ++ T + + + G Sbjct: 491 DLGLSDKLVVMQD-ASGQHRLWVRN---SGSEPASANTLLLVQTPLGSAATFTLANKDGK 546 Query: 707 VSAGAYTYFLAKGGESNGTGDSWYLRNTVPPKPQPPVVQPGQPTPPAEPPIMAAEGTPES 766 V G Y Y LA +NG G + PP P+P QP P +P A P + Sbjct: 547 VDIGTYRYRLA----ANGNGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPA 602 Query: 767 IVEAVDHAGVGGTPEPVYRPEVPLYAEAPAVARQLDLLQIDTFHDRQGEQGLLAENGSVP 826 E A V YAE+ A++++L G L N Sbjct: 603 GRELSAAANAAVNTGGVGLASTLWYAESNALSKRL---------------GELRLNPDAG 647 Query: 827 ASWVRVWGGNSNIKQKGDATPSFDGTVWGMQVGQDLYADTTASGHRNHYGFFLGFSRAVG 886 +W R + + + A FD V G ++G D +G R H G G++R Sbjct: 648 GAWGRGFAQRQQLDNR--AGRRFDQKVAGFELGAD--HAVAVAGGRWHLGGLAGYTRGDR 703 Query: 887 DVKGFALAQPDLGVGSLQVNAYNLGGYWTHIGPGGWYTDAVLMGS----ALTVRTHSSDI 942 G G ++ ++GGY T+I G+Y DA L S V Sbjct: 704 GFTGD---------GGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGYA 754 Query: 943 VNGSTNGNAFTGSVEAGLPIALGNGLTLEPQAQLVWQWLSLDRFNDGVS-SIAWNNGNTF 1001 V G + S+EAG +G LEPQA+L + + G++ Sbjct: 755 VKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGSSV 814 Query: 1002 VGRIGARLQYAFD-ASGVSWKPYLRVNVLRSFGTDDKTTFGGSTTIGTQVGQTAGQIGVG 1060 +GR+G + + A G +PY++ +VL+ F G G A ++G+G Sbjct: 815 LGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRA-ELGLG 873 Query: 1061 LVAQLTKRGSAYATVSYLTNLGGEHQRTITGNAGVRWAW 1099 + A L + S YA+ Y G + T +AG R++W Sbjct: 874 MAAALGRGHSLYASYEYSK--GPKLAMPWTFHAGYRYSW 910
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 112 bits (281), Expect = 4e-32 Identities = 82/259 (31%), Positives = 121/259 (46%), Gaps = 10/259 (3%) Query: 1 MRLDSYAGQAVMITGAASGFGALLASELAAMGARLALGDLNGEALERVAAPLRAAGADVI 60 M G+ ITGAA G G +A LA+ GA +A D N E LE+V + L+A Sbjct: 1 MNAKGIEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE 60 Query: 61 AQRCDVRVETEVAALVQEAVARFGRLDVGINNAGIAPPMKALIDTDEADLDLNFAVNAKG 120 A DVR + + G +D+ +N AG+ P + + + + F+VN+ G Sbjct: 61 AFPADVRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTG 119 Query: 121 VFFGMKHQIRQMLAQREGVILNVASMAGLGGAPKLAAYAASKHAVVGLTKTAALEYARHG 180 VF + + M+ +R G I+ V S +AAYA+SK A V TK LE A + Sbjct: 120 VFNASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYN 179 Query: 181 IRVNAVCPFYSTTSM---VTDSEIGDRQ---DFLAQ---GSPMKRLGRPDEIVATMLMLC 231 IR N V P + T M + E G Q L G P+K+L +P +I +L L Sbjct: 180 IRCNIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLV 239 Query: 232 AKDNTYLTGQAVAVDGGVS 250 + ++T + VDGG + Sbjct: 240 SGQAGHITMHNLCVDGGAT 258
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 125 bits (314), Expect = 6e-37 Identities = 87/255 (34%), Positives = 121/255 (47%), Gaps = 9/255 (3%) Query: 8 LTGKIALVTGASRGIGEEIAKLLAEQGAYVIVSSRKLDDCQAVADAIVAAGGRAEALACH 67 + GKIA +TGA++GIGE +A+ LA QGA++ + + V ++ A AEA Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 68 VGRLEDIAATFEHIRGKHGRLDILVNNAAANPYFGHILDTDLAAYEKTVDVNIRGYFFMS 127 V I I + G +DILVN A G I +E T VN G F S Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVN-VAGVLRPGLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 128 VEAGKLMKTHGGGAIVNTASVNALQPGDRQGIYSITKAAVVNMTKAFAKECGPLGIRVNA 187 K M G+IV S A P Y+ +KAA V TK E IR N Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 188 LLPGLTKTKFAGALFADKD--------IYETWMTKIPLRRHAEPREMAGTVLYLVSDAAS 239 + PG T+T +L+AD++ ET+ T IPL++ A+P ++A VL+LVS A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 240 YTNGECIVVDGGLTI 254 + + VDGG T+ Sbjct: 245 HITMHNLCVDGGATL 259
>PF06580#Sensor histidine kinase Length = 349 Score = 29.4 bits (66), Expect = 4e-04 Identities = 10/46 (21%), Positives = 23/46 (50%) Query: 1 MLGTILIIVLILLLIGAFPAWPHSRSWGYWPSGTVGLIVVIVVILV 46 M+ I I ++ L+L A+ ++ + W G + L V+ +++ Sbjct: 42 MIFNIAISLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVI 87
>TYPE4SSCAGX#Type IV secretion system CagX conjugation protein signature. Length = 522 Score = 27.1 bits (59), Expect = 0.022 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 38 EQAASAAASPRAAKKAERAADRAFAKKVRQAIVRAPGVGNAQ-VTVFAKAKTGDVTLAGQ 96 EQA A R +K ERA +RA + + A+ + N + ++ K + + + Sbjct: 156 EQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRENELDQME 215 Query: 97 IADESQDRAAVDAARQVPGVTSVKSKLQLR 126 ++ Q++A +A +Q+ + +++ +R Sbjct: 216 RLEDMQEQAQANALKQIEELNKKQAEEAVR 245
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 61.2 bits (148), Expect = 9e-14 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 7/188 (3%) Query: 8 RAERREATRERLLAAARTIFAEKGYAAASVEDIAAAAGHTRGAFYSNFRGKADVLFELLG 67 + + TR+ +L A +F+++G ++ S+ +IA AAG TRGA Y +F+ K+D+ E+ Sbjct: 5 TKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64 Query: 68 RDQDEAAAALQRIVGAHDPDDDAQ-----RAMLAYWRRGTTQPASRLMWLDAQLQAARDP 122 + D + +L + + Sbjct: 65 LSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMA 124 Query: 123 QFRARFGALLHDRRAFAAACIDAYAARVGVSLPLPTQVLALGLTALCDGMHSHGAAEARP 182 + L + + + L T+ A+ + G+ + P Sbjct: 125 VVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMEN--WLFAP 182 Query: 183 TDDTLADT 190 L Sbjct: 183 QSFDLKKE 190
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 81.0 bits (200), Expect = 1e-19 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 6/137 (4%) Query: 18 VLIAEDEPEIAEILTAYFARNGLRTVHAADGRRALELHLSLKPDLVLLDVQMPHVDGWKV 77 +L+A+D+ I +L +R G ++ + DLV+ DV MP + + + Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 78 LAEIR-HRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVARAQAVLRRSMAG 136 L I+ R D PV++++A + + + GA DY+ KPF+ E++ L Sbjct: 66 LPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE---- 121 Query: 137 SRQEEQRVLRAAPFEID 153 + L + Sbjct: 122 -PKRRPSKLEDDSQDGM 137
>PF06580#Sensor histidine kinase Length = 349 Score = 38.7 bits (90), Expect = 3e-05 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 20/71 (28%) Query: 254 LLENARRHAV-----PGAIRIQTRIEDGMCRLRVEDDGPGIPAEFAPHVFQAFRRVDESQ 308 L+EN +H + G I ++ ++G L VE+ G ++ Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLAL---------------KNT 307 Query: 309 PGGTGLGLAVV 319 TG GL V Sbjct: 308 KESTGTGLQNV 318
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 39.4 bits (92), Expect = 1e-05 Identities = 49/306 (16%), Positives = 95/306 (31%), Gaps = 37/306 (12%) Query: 32 VATFTTGLVHSLTLLFAARLLLGIGEGATLPAQARAVTHWFPRERRGVVQGFTHSFSRLG 91 V L +L+ R++ GI GAT + + R F + Sbjct: 85 VDYAIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDER------ARHFGFMS 137 Query: 92 NA-----VTPPIVAALTTWLSWRAAFFVIGAVTLVWLAWWIVGFREHPAGDDDGRPRAAR 146 V P++ L S A FF A+ L + F + + RP Sbjct: 138 ACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNG--LNFLTGCFLLPESHKGERRPLRRE 195 Query: 147 PVAPSGPTPWGPLFRRMAPTIFVYFC------YGWTAWLFFTWLPTFFLNGQGLNLKSTA 200 + P W +A + V+F W+ F F + + + A Sbjct: 196 ALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFG-EDRFHWDATTIGISLAA 254 Query: 201 LFASGVFFAGVVGDTLGGWLCDRIYRKTGNLALSRQSVIVTSFVGALVCLLPLAFVHSTA 260 ++ + L +R G + I+ +F P+ + ++ Sbjct: 255 FGILHSLAQAMITGPVAARLGERRALMLG-MIADGTGYILLAFATRGWMAFPIMVLLASG 313 Query: 261 GVALCLSGSFLCLELTIGPIWAVPSDIAPTHA-GIASGMMNAGSAISGILSPILFGYLVD 319 G+ + + A+ S G G + A ++++ I+ P+LF + Sbjct: 314 GIGM-------------PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360 Query: 320 RT-GSW 324 + +W Sbjct: 361 ASITTW 366
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 50.2 bits (120), Expect = 8e-09 Identities = 73/394 (18%), Positives = 134/394 (34%), Gaps = 32/394 (8%) Query: 21 LFMTFGFVFFDRLALSFL---FPFMSAELHLTNTQ---LGMVSSALALTWALSGAATGAW 74 L + V D + + + P + +L +N G++ + AL GA Sbjct: 7 LIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGAL 66 Query: 75 SDARGTRKPLLVAAVLGFSVCSALSGLVGGFASLIAFRALMGIAEGPVLPLSQSLMVESS 134 SD G R+P+L+ ++ G +V A+ L R + GI G ++ + + + + Sbjct: 67 SDRFG-RRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADIT 124 Query: 135 TPSRRGLNMGLLQGSAAGLLGAMIGPPVVIGIATAYGWREAFYVSCIPGFLIAFCIWRWV 194 R + G + +A M+ PV+ G+ + F+ + L + Sbjct: 125 DGDERARHFGFM---SACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181 Query: 195 REMPPGGVRHVQADTAAVPAASGAEFSRWALLKERNILLCVLISCFFLTWFVVIISFAP- 253 E G R A P AS RWA L + FF+ V + A Sbjct: 182 PE-SHKGERRPLRREALNPLAS----FRWARGMTVVAALMAV---FFIMQLVGQVPAALW 233 Query: 254 VFLVESR-HLAPSDMGVVMTCLGAA-WVFWGFAVPAISDRIGRKPTMIGFALIAAMCPVV 311 V E R H + +G+ + G + ++ R+G + + +IA + Sbjct: 234 VIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGER-RALMLGMIADGTGYI 292 Query: 312 LI-HVGSVWALGALVFVTYTGLGCFTLFMATIPAETVPPRAIASALGLIMGAGEL---IG 367 L+ W + F L + M + A + + G + G+ + Sbjct: 293 LLAFATRGW----MAFPIMVLLASGGIGMPALQA-MLSRQVDEERQGQLQGSLAALTSLT 347 Query: 368 GFVAPTVAGFAADRYGLQFAMWTSTTGAILACVL 401 V P + + W GA L + Sbjct: 348 SIVGPLLFTAIYAASITTWNGWAWIAGAALYLLC 381
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 89.0 bits (220), Expect = 2e-23 Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 21/250 (8%) Query: 8 DGQSVVVTGGTSGIGARTALRFAQAGASVVALGLDATGPHAPVHAGV------RCVELDV 61 +G+ +TG GIG A A GA + A+ + V + DV Sbjct: 7 EGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 62 TDGAAL----TRTIAALPRLDVLVNGVGISRHAG--EYRMDQFEHVLNVNLMSVMRASDA 115 D AA+ R + +D+LVN G+ R +++E +VN V AS + Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRS 126 Query: 116 ALPALTAN-GGSIVNIASMYTYFGSKDRPAYSASKGGIAQLTRSLAQAWADHGIRVNAVA 174 + GSIV + S AY++SK T+ L A++ IR N V+ Sbjct: 127 VSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVS 186 Query: 175 PGWIDTPLSSALMADTLASRRILERT--------PLGRWGTADEVAEVILFLCSPGASFV 226 PG +T + +L AD + ++++ + PL + ++A+ +LFL S A + Sbjct: 187 PGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGHI 246 Query: 227 TGAVVPVDGG 236 T + VDGG Sbjct: 247 TMHNLCVDGG 256
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 71.8 bits (176), Expect = 4e-16 Identities = 74/355 (20%), Positives = 124/355 (34%), Gaps = 61/355 (17%) Query: 3 KKTFLALAACTLPAAAFAQSSVTMFGLMDTGISYVSNQGGHGAAKFDDNIF-----FPNL 57 KK+ +AL LP AA A VT++G + G+ + +GA + Sbjct: 2 KKSLIALTLAALPVAAMAD--VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59 Query: 58 LGFEGKEDLGAGTRAIFRLVNQYSLGNGSIIGGGLFARTAYVGLQNDRYGTLTLGNQYEF 117 +GF+G+EDLG G +AI+++ + S+ G R +++GL+ +G L +G Sbjct: 60 IGFKGQEDLGNGLKAIWQVEQKASIAGT---DSGWGNRQSFIGLKGG-FGKLRVGRLN-- 113 Query: 118 MVDALAASGNEIAQDLVGLYGFRNGPFDRLGLPNNPTGAFDW---DRVAGSNRVANSVKY 174 G N D+ +++A SV+Y Sbjct: 114 ------------------------SVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRY 149 Query: 175 TSPSLSGLTFGALYGFGNVAGSIGANNTVSVGASYDHGPFG--AGAAYTNQKYGAADGLP 232 SP +GL+ Y + AG + + G +Y +G F G AY + Sbjct: 150 DSPEFAGLSGSVQYALNDNAGR-HNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENV-N 207 Query: 233 PTSVRNWGAGVHY-------TVGTVTGKALVTT---VHNARNGAGAWSAEAGAAWRP--S 280 + Y +V A + HN++ A A P S Sbjct: 208 IEKYQIHRLVSGYDNDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVS 267 Query: 281 PVWVIGASYTYMKGNDTLDDAHAHQLLAAVQYWLSKRTMVYVAGVHQRASHGSNA 335 S+ N+ D Q++ +Y SKRT V+ + G + Sbjct: 268 YAHGFKGSFDATNYNNDYD-----QVVVGAEYDFSKRTSALVSAGWLQEGKGESK 317
>ECOLIPORIN#E.coli/Salmonella-type porin signature. Length = 383 Score = 31.0 bits (70), Expect = 0.006 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 174 GLSYGGRTGPVFDAKVMWTINRRNPATDYRSGQEFIVDYSAGWGFGNGLTVGAGGYFYRQ 233 L Y G+ V N RN D R S + G G + G Y Sbjct: 169 ALQYQGKNESQSADDVNIGTNNRNNGDDIRYDNGDGFGISTTYDIGMGFSAG-AAYTTSD 227 Query: 234 MTDD-AQAGQTIA-GNRGRSFAIGPSIKYDS 262 T++ AG TIA G++ ++ G +KYD+ Sbjct: 228 RTNEQVNAGGTIAGGDKADAWTAG--LKYDA 256
>VACJLIPOPROT#VacJ lipoprotein signature. Length = 251 Score = 218 bits (557), Expect = 5e-72 Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 8/238 (3%) Query: 3 KVRIIAATVAASAMLTGCATGP--NRNPNDPLEPMNRAMYKFN-DTVDTNIAQPIAKGYQ 59 K+R+ A + + +L GCA+ + +DPLE NR MY FN + +D I +P+A ++ Sbjct: 2 KLRLSALALGTT-LLVGCASSGTDQQGRSDPLEGFNRTMYNFNFNVLDPYIVRPVAVAWR 60 Query: 60 KVTPTPVRTAISNFFSNLGDLGNMANNLLQLRITDATQDLMRVAMNSLFGVAGLIDIATP 119 P P R +SNF NL + M N LQ R +N++ G+ G ID+A Sbjct: 61 DYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTRFFLNTILGMGGFIDVAGM 120 Query: 120 AGLPKH---HQDFGLTMARWGMPSGPYLVLPVFGPSTIRDGVGRAVDVRFNLLNYIEPAA 176 A FG T+ +G+ GPY+ LP +G T+RD G D + +L+++ Sbjct: 121 ANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDDGGDMADALYPVLSWLTWPM 180 Query: 177 RNPMYIAQFISARSDLLGATDLLKQAALDPYSFVRDAYLQQRKSLTYHGQSASAAAPN 234 + + I R+ LL + LL+Q + DPY VR+AY Q+ + G+ PN Sbjct: 181 SVGKWTLEGIETRAQLLDSDGLLRQ-SSDPYIMVREAYFQRHDFIANGGELKPQENPN 237
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 58.3 bits (141), Expect = 1e-10 Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 18/205 (8%) Query: 284 TLLAVLVILWLALRSKRMIGSVLVTLFVGLVVTAALGLAMVGSLNMISVAFMVLFVGLGV 343 +L LV+ L L++ R + + V L+ T A+ A S+N +++ MVL +GL V Sbjct: 348 IMLVFLVMY-LFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLV 406 Query: 344 DFSIQYGVKYREERFRDERID--HALIGAAHSMGMPLALATAAVAASFFSFIPTAYRGVS 401 D +I V+ E ++++ A + + L ++A FIP A+ G S Sbjct: 407 DDAIVV-VENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSA---VFIPMAFFGGS 462 Query: 402 E------LGLIAGVGMFVALLTTLTLLPALLRLF-----APPGESKTPGFPWLAPVDDYL 450 + M +++L L L PAL A E+K F W D+ Sbjct: 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS 522 Query: 451 DRHRKPILIGTLAVVIGALPLLAFL 475 H + L L + A + Sbjct: 523 VNHYTNSVGKILGSTGRYLLIYALI 547 Score = 32.1 bits (73), Expect = 0.013 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 36/182 (19%) Query: 268 DEFASVEDGAALNGVLTLLAVLVILWLALRSKRMIGSVLVTLFVGLVVTAALGLAMVGSL 327 + + A ++ + V + L S + SV++ + +G+V L + Sbjct: 863 YQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIV-GVLLAATLFNQ- 920 Query: 328 NMISVAFMVLFVGLG----------VDFSIQYGVKYREERFRDERIDHA---------LI 368 V FMV + V+F+ + +E + E A + Sbjct: 921 -KNDVYFMVGLLTTIGLSAKNAILIVEFAKD--LMEKEGKGVVEATLMAVRMRLRPILMT 977 Query: 369 GAAHSMGM-PLALATAAVAASFFSFIPTAYRGVSELGLIAGVGMFVALLTTLTLLPALLR 427 A +G+ PLA++ A + + + G+ +G GM A L + +P Sbjct: 978 SLAFILGVLPLAISNGAGSGAQNAV------GIGVMG-----GMVSATLLAIFFVPVFFV 1026 Query: 428 LF 429 + Sbjct: 1027 VI 1028
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 62.7 bits (152), Expect = 3e-14 Identities = 31/201 (15%), Positives = 73/201 (36%), Gaps = 13/201 (6%) Query: 20 KPRTKPAEVRLEELMAAAETLFLAQGVEATTISEIVEHAQVAKGTFYHYFESKADMLAAL 79 + + A+ + ++ A LF QGV +T++ EI + A V +G Y +F+ K+D+ + + Sbjct: 3 RKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEI 62 Query: 80 AQRYTASFLDQLQHAVNGCDADDWLARLRAWIRASIE----------IYAATYRTHDIVY 129 + ++ + D + LR + +E + + + V Sbjct: 63 WELSESNIGELELEYQAKFPGDPL-SVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 130 TNHHHHDRENADKNAILEQLGAILDGGVRAGAWRLAHPP-VTALLIYAGVHGATDHIIAS 188 + +++ L + A A+++ + G ++ + + Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 189 PET-DRVAFVDAVVDDCLRML 208 P++ D V L M Sbjct: 182 PQSFDLKKEARDYVAILLEMY 202
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 127 bits (320), Expect = 5e-34 Identities = 83/421 (19%), Positives = 163/421 (38%), Gaps = 15/421 (3%) Query: 2 SRYRRAALVLAACLGTFLATLDISIVNVALPTLQTALDTDIGGLQWVINAYALALSAFML 61 S R +++ C+ +F + L+ ++NV+LP + + WV A+ L S Sbjct: 8 SNLRHNQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTA 67 Query: 62 SAGPLGDRYGHKRVWLASVILFTAGSIVCACAGRIEPLL-AGRAIQGLAGALLIPGAMPI 120 G L D+ G KR+ L +I+ GS++ LL R IQG AGA P + + Sbjct: 68 VYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQG-AGAAAFPALVMV 126 Query: 121 LTHAFPDARERARVIGGWSAFSALALIVGPLLGGLLVEHGGWQDIFLVNVPIGIVAVLLG 180 + + R + G + A+ VGP +GG++ + W + L+ + I L Sbjct: 127 VVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLM 186 Query: 181 TWGIPERRHPEHAAFDPFGQVLSVAWLGLLTYGLIGIGEVGTSHVKVLAPLAGAAVVFVV 240 E R H FD G +L + TS+ + + + F++ Sbjct: 187 KLLKKEVRIKGH--FDIKGIILMSVGIVFFMLFT-------TSYSISFLIV--SVLSFLI 235 Query: 241 FVRVETRVARPLLPVWLFRDRRLVRANLASFVLGFSGYSSLFFLSLFLQQAQGRAPAAAG 300 FV+ +V P + L ++ + L ++ + + + ++ + A G Sbjct: 236 FVKHIRKVTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIG 295 Query: 301 WQLM-PQFVMTAITSVLFGRIAARIPLRALMVAGYGLIGAMLVVMAGFGAATPYAALGVV 359 ++ P + I + G + R ++ G + + + T + ++ Sbjct: 296 SVIIFPGTMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIII 355 Query: 360 LALLGVGMGLAVPATGMTVMELAPAERAGMASATMNALRQTGMSLGIAVLGSMMSVGALH 419 + +LG + + L E AG + +N GIA++G ++S+ L Sbjct: 356 VFVLGGLSFTKTVISTIVSSSLKQQE-AGAGMSLLNFTSFLSEGTGIAIVGGLLSIPLLD 414 Query: 420 R 420 + Sbjct: 415 Q 415
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 70.6 bits (173), Expect = 1e-16 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 9 PAARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNADEALALAESLEPDLALMDVGMNGM 68 A +L+ DD +R L L A V NA + + DL + DV M Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 69 NGITLAGVFHERFPGIRVLMLSMHDNIEYVTQAVRAGASGYLLKDSPASEIVRAIGAVLA 128 N L + P + VL++S + +A GA YL K +E++ IG LA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120
>PF06580#Sensor histidine kinase Length = 349 Score = 37.9 bits (88), Expect = 6e-05 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 397 HTVTLTIADNGCGFDAERSQADVRHGIGLRNMRERLDALGG---TLTITSQVGHTIVAAS 453 TVTL + + G ++ G GL+N+RERL L G + ++ + G Sbjct: 290 GTVTLEVENTGSLALKNTKES---TGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVL 346 Query: 454 VP 455 +P Sbjct: 347 IP 348
>TONBPROTEIN#Gram-negative bacterial tonB protein signature. Length = 239 Score = 29.6 bits (66), Expect = 0.024 Identities = 28/146 (19%), Positives = 44/146 (30%), Gaps = 19/146 (13%) Query: 338 AGASGVAVSLVCADEAPQLAAIEALIRQTLRREEEPGFEAEHRVPETSATGEIIKKPKKP 397 A A ++V++V + A++ + E EP E + KPK Sbjct: 40 APAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK 99 Query: 398 KKPKVAQAVPVGKQASGKKPPAQGGEGKRKAVAQHAKPAVGTGTDYTIGSPFSVQKPRSK 457 KP K Q + ++ A P T S + Sbjct: 100 PKPVK-------------KVQEQPKRDVKPVESRPASPFENTAPARLTSS------TATA 140 Query: 458 PAGKAGTGKPAGKSAGGRGKPGKPSR 483 K T +G A R +P P+R Sbjct: 141 ATSKPVTSVASGPRALSRNQPQYPAR 166
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 30.2 bits (68), Expect = 0.035 Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 165 FGAFLIMVIILAVLALIVVKALTNSPWGTFTVAATIPIALFMGVYTRYIRPGRIGEVSII 224 +V I V+ + + AL S +V +P+ + + + + ++ Sbjct: 869 GNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMV 928 Query: 225 GFIGLMAAIA 234 G + + A Sbjct: 929 GLLTTIGLSA 938
>PF06580#Sensor histidine kinase Length = 349 Score = 29.8 bits (67), Expect = 0.007 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 8/95 (8%) Query: 101 WSLFGVSWGLAVFGIVQELTLGRRTRLLSMILYV---LMGWLALVAVRPLIHALP----- 152 W G+ WG+ +L +L SMI + LMG + A R I Sbjct: 13 WYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRSFIKRQGWLKLN 72 Query: 153 PIGTAWLVAGGVIYSAGIYFFINDERIRHGHGIWH 187 V + ++F N R I Sbjct: 73 MGQIILRVLPACVVIGMVWFVANTSIWRLLAFINT 107
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 123 bits (310), Expect = 2e-33 Identities = 72/363 (19%), Positives = 138/363 (38%), Gaps = 13/363 (3%) Query: 13 RVLAATCVSYMLVLLDASIVNVALTDIAHTFGSRVAGLQWIVNAYTLAFASLLLTGGTLG 72 ++L C+ +L+ ++NV+L DIA+ F A W+ A+ L F+ G L Sbjct: 14 QILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLS 73 Query: 73 DRLGDRTVYVAGLAVFVTASALCGVAPT-LPALAVARALQGVGSAMLVPCSLALINRAFP 131 D+LG + + + G+ + S + V + L +AR +QG G+A P + ++ + Sbjct: 74 DQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAF-PALVMVVVARYI 132 Query: 132 EPAARASAISVWMGCGGIAMASGPLIGGLLIDLSGWRSLFFVNLPLGLAGIWLGRTVAPA 191 R A + + GP IGG++ W L + + + + + + Sbjct: 133 PKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKK 191 Query: 192 AVDRSRQFDWGGQAAAIVAIGALIGTLIEGPSLGWRSAPIVGGAVASVVAWIAFIAIEAR 251 V FD G V I + L S I + SV++++ F+ + Sbjct: 192 EVRIKGHFDIKGIILMSVGIVFFM--------LFTTSYSI-SFLIVSVLSFLIFVKHIRK 242 Query: 252 RREPMLPLAFFRNRLFAGSTFVSMASAFVFYGLLFVLSLFYRQVRGASPLDTGLAFL-PM 310 +P + +N F G + ++ + V S + G + P Sbjct: 243 VTDPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPG 302 Query: 311 TAMVALGGLTSGRIVARFGARGTMCAAFGLYAAGALGMTAIGATTPAWLAVAPMLAIGFA 370 T V + G G +V R G + + L + + TT ++ + + +G Sbjct: 303 TMSVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGL 362 Query: 371 SGS 373 S + Sbjct: 363 SFT 365
>PF06340#Vibrio cholerae toxin co-regulated pilus biosynthesis protein F (TcpF) Length = 338 Score = 27.7 bits (61), Expect = 0.017 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 3 PAD-TDADARRIHEDWHAAVVARDFDALMSLYAD 35 + +D R ED+ A ++A D+D+L LY D Sbjct: 84 SSTESDGAKTRTKEDFSARLLAGDYDSLQKLYID 117
>ENTEROTOXINA#Heat-labile enterotoxin A chain signature. Length = 258 Score = 26.5 bits (58), Expect = 0.025 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 10/57 (17%) Query: 43 LGRFHERLVGPHPAWSYQIAFDAARFDDIVPWLVLNHGALDIFLHPNTHDELRDHRD 99 LG + PHP A + I W +N G +D LH N R++RD Sbjct: 119 LGVY-----SPHPYEQEVSALGGIPYSQIYGWYRVNFGVIDERLHRN-----REYRD 165
>STREPTOPAIN#Streptopain (C10) cysteine protease family signature. Length = 398 Score = 32.7 bits (74), Expect = 0.005 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 36/202 (17%) Query: 91 YTKATPAATVTPYHLDARQGNAQRAGGTPHTWADAQAAWDHGRMNRWPDAKTPLSMGYYD 150 Y + P +TP + G G T A A + + +P+ K Y Sbjct: 160 YNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGCVATATAQIMKYHNYPN-KGLKDYTYTL 218 Query: 151 AAEVPFQRALADAFTLCDHYHCGMHTGTIANRLFYWSGTNG--PNGISPADGSRVNIAAL 208 ++ P+ + F I+ R + W+ S ++ Sbjct: 219 SSNNPYFNHPKNLF------------AAISTRQYNWNNILPTYSGRESNVQKMAISELMA 266 Query: 209 NNQFNGGNDIGPSSQGWTWTTYADRLQQAGVNWKVYQSLIDNFGCNEMMSFRH------- 261 + + D GPSS + R+Q+A L +NFG N+ + + Sbjct: 267 DVGISVDMDYGPSSGS----AGSSRVQRA---------LKENFGYNQSVHQINRGDFSKQ 313 Query: 262 -WRAAIEQMPAARRPAYVASTD 282 W A I++ + +P Y Sbjct: 314 DWEAQIDKELSQNQPVYYQGVG 335
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 39.9 bits (93), Expect = 1e-06 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 10/120 (8%) Query: 36 PSLEKWQKRLDSVR----EHGMSLVAEIDGTVVGHLGLHPEPNPRRRHAAALGMMVDAAR 91 P ++++ V E + + ++ +G + + N +A + V Sbjct: 45 PYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWN---GYALIEDIAVAKDY 101 Query: 92 HGRGIGGRLLAAAIDLAENWLNITRLELTVFTDNRAAIALYEKHGFRIEGESPDYALRDG 151 +G+G LL AI+ A+ + L L N +A Y KH F I D L Sbjct: 102 RKKGVGTALLHKAIEWAKE-NHFCGLMLETQDINISACHFYAKHHFIIGAV--DTMLYSN 158
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 369 bits (949), Expect = e-126 Identities = 159/488 (32%), Positives = 229/488 (46%), Gaps = 37/488 (7%) Query: 31 SAGTV-VVDRDARVVWMNERYAARFGFADPQQAVGLDCEAVIPNSLMREVVSTGQP--IL 87 + T+ V D DA + + + +R G D + + ++ G ++ Sbjct: 2 TGATILVADDDAAIRTVLNQALSR---------AGYDVRITSNAATLWRWIAAGDGDLVV 52 Query: 88 LDIMETGREPLVV--------TRLPL-----KNEAGETVGAIGFALFDQLKTLTPIFSRY 134 D++ + LP+ +N + A +D L + Sbjct: 53 TDVVMPDENAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYL-PKPFDLTEL 111 Query: 135 AQLQQQ-LIATQRSLAQARRAKYTFASFVGTSAASLETKRQARRAAQVDSPVLLLGETGT 193 + + L +R ++ VG SAA E R R Q D +++ GE+GT Sbjct: 112 IGIIGRALAEPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGT 171 Query: 194 GKELLAHAIHAASARALQPLVTVNVAAIPDTLLETEFFGAAPGAYTGADRKGRVGKFELA 253 GKEL+A A+H R P V +N+AAIP L+E+E FG GA+TGA + G+FE A Sbjct: 172 GKELVARALHDYGKRRNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTR-STGRFEQA 230 Query: 254 DRGTLFLDEIGDMPLPLQGKLLRVLQDKEFEPVGSNRIVRADVRIIAATSADLPALVAAG 313 + GTLFLDEIGDMP+ Q +LLRVLQ E+ VG +R+DVRI+AAT+ DL + G Sbjct: 231 EGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQG 290 Query: 314 RFRADLYYRLNVLTIHAPPLRERASDIAALVYATLEELAAQHGRAAHCELTDDALRMLCA 373 FR DLYYRLNV+ + PPLR+RA DI LV +++ A + G +AL ++ A Sbjct: 291 LFREDLYYRLNVVPLRLPPLRDRAEDIPDLVRHFVQQ-AEKEGLDVKR-FDQEALELMKA 348 Query: 374 YPWPGNVRELRNTLERALMLSDRSVIDARALAPFLG------PVRISPDGAAPAQRVGAV 427 +PWPGNVREL N + R L + VI + L P+ + + AV Sbjct: 349 HPWPGNVRELENLVRRLTALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAV 408 Query: 428 PAEQRAVDAPTASAAPA-ASYADALAAWERQFLTDALAACDGKVVDAAARIGIGRATLYK 486 R A A P Y LA E + AL A G + AA +G+ R TL K Sbjct: 409 EENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRK 468 Query: 487 KLAALGID 494 K+ LG+ Sbjct: 469 KIRELGVS 476
>CHLAMIDIAOM6#Chlamydia cysteine-rich outer membrane protein 6 signature. Length = 547 Score = 24.7 bits (53), Expect = 0.044 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 5 VAGLGGCGG---GAPLFTSDGRPTTQVQCTGNDWS 36 +A + CGG A + T P QV G DWS Sbjct: 293 IATVSYCGGHKNTASVTTVINEPCVQVSIAGADWS 327
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 60.8 bits (147), Expect = 8e-14 Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 15/205 (7%) Query: 1 MGVSRQQAAENRHAIVAAAERLFRLRGVDAVGLTELMKEAGFTQGGFYNHFKSKDALVAE 60 ++Q+A E R I+ A RLF +GV + L E+ K AG T+G Y HFK K L +E Sbjct: 2 ARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSE 61 Query: 61 VMDKAMQ------DRADSPNAGSVAKQVTAYLSGAHRDNVEGG---------CPLSGFAG 105 + + + + G + L V F G Sbjct: 62 IWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVG 121 Query: 106 DAPRLTDAARACYTRGVAAYLERLERMVATEGSVAADARDDAIAVLSQMVGALVLSRAVA 165 + + A R + L+ + + A A ++ + L+ + A Sbjct: 122 EMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFA 181 Query: 166 GTDPALADEILDAARRALVGQPDDP 190 L E D L P Sbjct: 182 PQSFDLKKEARDYVAILLEMYLLCP 206
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 63.9 bits (155), Expect = 2e-14 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 17/208 (8%) Query: 3 IEGAVVFITGANRGLGLEFAKQALERGARKVYAGARDP-------ASVTLPGVVP--VKL 53 IEG + FITGA +G+G A+ +GA + A +P +S+ Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGA-HIAAVDYNPEKLEKVVSSLKAEARHAEAFPA 64 Query: 54 DVTDPAAVAA-----AADAARDVTLLINNAGIARLGSLTDDGAVDALRAHLETNVFGMLA 108 DV D AA+ + + +L+N AG+ R G L + + A N G+ Sbjct: 65 DVRDSAAIDEITARIEREMGP-IDILVNVAGVLRPG-LIHSLSDEEWEATFSVNSTGVFN 122 Query: 109 MSRAFAGTLAAHGGGAILNILSVASWVNRPILSGYGVSKSAAWALTNGLRHSLREQHTQV 168 SR+ + + G+I+ + S + V R ++ Y SK+AA T L L E + + Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 169 VGLHAGFIDTDLTAGLDVPKATPADVVR 196 + G +TD+ L + V++ Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIK 210
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.8 bits (106), Expect = 4e-07 Identities = 62/292 (21%), Positives = 100/292 (34%), Gaps = 62/292 (21%) Query: 20 TVLVCGANGFIGRALCAQLEAGGHRVLRGVRHAAGPYDVAIDFAH--------------D 65 LV GA GFIG + +L GH+V+ G+ + YDV++ A D Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVV-GIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60 Query: 66 VDPHAWLARL---KGVDVVINAVGMLADRR----GATLDAVHRAAPSALFTACCRAGVRR 118 + + L + V + LA R + + C ++ Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQH 120 Query: 119 VIQISALGVERGDTR----------------YFASKQAADRFLQTLP----IDFRIVRPA 158 ++ S+ V G R Y A+K+A + T + +R Sbjct: 121 LLYASSSSV-YGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179 Query: 159 LVYGAAG----ASARFFR-MLASLPVHVLPAGGHQRLRPVHVDDLAEVVARLVMQPSDSP 213 VYG G A +F + ML + V G +R ++DD+AE + RL + Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYGKMKR-DFTYIDDIAEAIIRLQDVIPHAD 238 Query: 214 PARAR------------RVIDVVGRDEVEYREMLAAYRAALGFPPAARVTLP 253 RV ++ VE + + A ALG A + LP Sbjct: 239 TQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALG-IEAKKNMLP 289
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 44.4 bits (105), Expect = 5e-07 Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 76/320 (23%) Query: 187 LVTGGTGFIGETLVNQLLDAGQTVTLL---------ARDPLRAAYL-------FQGRVRS 230 LVTG GFIG + +LL+AG V + + R L + + Sbjct: 4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLAD 63 Query: 231 VTSIDQLQPHERFDTVVNLAGAPVLGARWSKRRQALLLASRVGVTQALMRWVETAEVKPR 290 + L F+ V L R+S S + ++ +++ Sbjct: 64 REGMTDLFASGHFERVFISPHR--LAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHL 121 Query: 291 TWIQASAIGYYGVRPG-----DERLDEGSS--AGTGFMSDLCRRWEAAAEPL-----ERH 338 + +S++ YG+ D+ +D S A T + A E + + Sbjct: 122 LYASSSSV--YGLNRKMPFSTDDSVDHPVSLYAAT----------KKANELMAHTYSHLY 169 Query: 339 GVRAVVLRLGIVFGPGGALRPMLLPHYFG---LGGR----FGDGAQVMSWIHRDDVLRIV 391 G+ A LR V+GP G RP + F L G+ + G + + DD+ + Sbjct: 170 GLPATGLRFFTVYGPWG--RPDMALFKFTKAMLEGKSIDVYNYGKMKRDFTYIDDIAEAI 227 Query: 392 ARAMSNP------------------GMHGVYN--AVAPVPLTQRAFVQVVTKVLRRPA-- 429 R + VYN +PV L ++Q + L A Sbjct: 228 IRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMD--YIQALEDALGIEAKK 285 Query: 430 -FLHMPAAPLRAAMGEMAEL 448 L + + + L Sbjct: 286 NMLPLQPGDVLETSADTKAL 305
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 48.5 bits (115), Expect = 2e-09 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 10/189 (5%) Query: 3 RPRSPDKHDAILAAAARALAEDGASATTAR-IAKLAGVAEGTVFTYFETKDALLNALYLS 61 + + + IL A R ++ G S+T+ IAK AGV G ++ +F+ K L + ++ Sbjct: 6 KQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWEL 65 Query: 62 LKAGLREAMMTGFPE-HAPAEQAVRHAWNGYVSWGVANPDGRRAL-------QQLGVSGR 113 ++ + E + + +R + V R + + +G Sbjct: 66 SESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAV 125 Query: 114 IDDAHRAAGAEGFGGIGSLLREQVGASGTLNRDEAHAFCSALFTSIAETAMESIARDPAR 173 + A R E + I L+ + A + I+ ME+ P Sbjct: 126 VQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL-MENWLFAPQS 184 Query: 174 ADAYREAGF 182 D +EA Sbjct: 185 FDLKKEARD 193
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 99.0 bits (246), Expect = 1e-26 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 9/188 (4%) Query: 3 KVWLVTGAARGLGRAISEAVLAAGDRLVAGARDPARLADLAE------RYGDRLLPVELD 56 K+ +TGAA+G+G A++ + + G + A +P +L + R+ + D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAF---PAD 65 Query: 57 VTDEAAAAQAVSAARAAFGRIDVLVNNAGYGHTAPFEQMSADAFRDQIETNLFGVINLTR 116 V D AA + + G ID+LVN AG +S + + N GV N +R Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125 Query: 117 AVLPTMRAQRAGHIFQVSSVGGRTSTPGLSAYQAAKWAVGGFSDVLAKEAAPFGVRVCTL 176 +V M +R+G I V S ++AY ++K A F+ L E A + +R + Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185 Query: 177 EPGGMRTE 184 PG T+ Sbjct: 186 SPGSTETD 193
>NUCEPIMERASE#Nucleotide sugar epimerase signature. Length = 334 Score = 34.0 bits (78), Expect = 6e-04 Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 151 IVVTGAAGGVGSVATALLARLGYRVVAVTGRPADADYLRQLGAAEILDRGQFS 203 +VTGAAG +G + L G++VV + D + E+L + F Sbjct: 3 YLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQ 55
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 77.7 bits (191), Expect = 4e-20 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 1/180 (0%) Query: 2 LLRTGLEILTEKGFSATGLDEILGRAGVPKGSFYHYFDSKEAFGLKLIDRYAEFFARKLD 61 +L L + +++G S+T L EI AGV +G+ Y +F K ++ + Sbjct: 16 ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELEL 75 Query: 62 RHFSQLERSPLARVRAFVDDARDGMARHAYNRGCL-IGNLGQEMGTLPESFRARLRATFE 120 + ++ PL+ +R + + R + I E + R Sbjct: 76 EYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCL 135 Query: 121 DWQRRLAECLDAAQQAGELAESADPAALAAFFWIGWEGAVLRAKLERSDQPLALFAQFFF 180 + R+ + L +A L A G + L A+ + Sbjct: 136 ESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYV 195
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 38.3 bits (89), Expect = 5e-05 Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 8/182 (4%) Query: 258 STLRDAMTNWRVFVLAFVNFCGIVGSLGVGLWMPQIIKQFGVEHAVVGWLTAIPYAIGAG 317 S LR N + L ++F ++ + + + +P I F A W+ + Sbjct: 8 SNLRH---NQILIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSI 64 Query: 318 AMLWWARLANRAANRIPYVAGALALAAAALCASAFMHAPVFKLI-ALCVTVSGILAFQAT 376 + +L+++ + + G + ++ H+ LI A + +G AF A Sbjct: 65 GTAVYGKLSDQLGIKRLLLFGIIINCFGSVIG-FVGHSFFSLLIMARFIQGAGAAAFPAL 123 Query: 377 YWAIPSGFLTGRAAAGGLALIVSVGNLGGFVGPSMIGALKQFSGG---FTAPLIAVSGVL 433 + + ++ LI S+ +G VGP++ G + + P+I + V Sbjct: 124 VMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVP 183 Query: 434 LL 435 L Sbjct: 184 FL 185
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 65.6 bits (160), Expect = 5e-14 Identities = 77/373 (20%), Positives = 123/373 (32%), Gaps = 82/373 (21%) Query: 35 AQSSVTLYGIADVGVEHINNTNTGGAQTRE----ASGNLSGSRWGLKGVEDLGGGMKAIF 90 A + VTLYG GVE + GAQ GS+ G KG EDLG G+KAI+ Sbjct: 17 AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIW 76 Query: 91 QLENGFNINDGTTAQSTKGLGSNAATTSRIFGRQAWVGLAYRGQQLTFGRQNALFYEQAV 150 Q+E +I + RQ+++GL +L GR N++ + Sbjct: 77 QVEQKASIAGTDSGWGN---------------RQSFIGLKGGFGKLRVGRLNSVLKD--- 118 Query: 151 AFDPMGASSRYSVLSVDYAAAARIDN---SVKYTG-VFGPLTAQAMYSTRYDTGYGAEVP 206 D S+ L V+ A + SV+Y F L+ Y+ + G Sbjct: 119 TGDINPWDSKSDYLGVNK--IAEPEARLISVRYDSPEFAGLSGSVQYALNDNAGRH---- 172 Query: 207 GAQLTGRFFSGALTFSQGPLAASVSYEQRNSNTVATNTGTERRATAAASYAIGPVKGFAG 266 + + G + + V N E+ + + +G Sbjct: 173 ----NSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEK----YQIHRLV-----SG 219 Query: 267 YRYLRASNAFLPANPIRVANGAEASAANLYWAG----------AQYAVSPAFVVTATAYY 316 Y + + + + A L A A V +Y Sbjct: 220 YD----------NDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYA 269 Query: 317 Q----DVHSTSADPWL--AVLCADYLLSKRTDIYATAGFARNKGGSALGVNGYGTVAPDH 370 +T+ + V+ A+Y SKRT +AG+ + G + V Sbjct: 270 HGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFV---------- 319 Query: 371 NQTGVVIGMRQKF 383 T +G+R KF Sbjct: 320 -STAGGVGLRHKF 331
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 34.0 bits (78), Expect = 0.001 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 36/364 (9%) Query: 53 LPTLALQFGLN---KAQLGMFTSVTAAGQIIGGILFGFVSDRIGRVRTALLCVGIYSLFS 109 LP L + A G+ ++ A Q + G +SDR GR L+ + ++ Sbjct: 28 LPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDY 87 Query: 110 GLIAFAPDAHAFATLRFFGALGMGGTWTAGAALIAETWHPSRRGKGGALMQMGLPIGAIL 169 ++A AP R + G T A IA+ R + M G + Sbjct: 88 AIMATAPFLWVLYIGRIVAGI-TGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA 146 Query: 170 AIAISGIVGATHGGLGGDSWRLLFLIGASPFFILFWVARKTPESPIWLERRHAKPQARKP 229 + G+ +GG S F A+ + F ERR + +A P Sbjct: 147 GPVLGGL-------MGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNP 199 Query: 230 DTAGHEKLNVRGLLTAFCFIFFLQYLYWGV------------FTWTPTFLITVKHLDFVH 277 + + + A +FF+ L V F W T + Sbjct: 200 LASFRWARGMTV-VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTI---------- 248 Query: 278 SLKFVLALQFGAIAGFLLFSAWVDRIGRRPMFLAYLLVGALAVGVYIVSANPLLLMTAIF 337 + ++A ++ R+G R + ++ + + + + Sbjct: 249 GISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMV 308 Query: 338 LTGFSVNGIFAGAGPFLAEIIGNTASRGFFMGLAYNGGRLGGFIAPLIIGALASTSGGFV 397 L GI A + + +G G L + PL+ A+ + S Sbjct: 309 LLASG--GIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTW 366 Query: 398 LGLA 401 G A Sbjct: 367 NGWA 370 Score = 32.5 bits (74), Expect = 0.003 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 7/125 (5%) Query: 298 AWVDRIGRRPMFLAYLLVGALAVGVYIVSANPLLLMTAIFLTGFSVNGIFAGAGPFLAEI 357 A DR GRRP+ L L A+ + + +L + G + A AG ++A+I Sbjct: 65 ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADI 123 Query: 358 I-GNTASRGF-FMGLAYNGGRLGGFIAPLIIGALASTSGGFVLGLATTIVAFVAAAAVVL 415 G+ +R F FM + G +A ++G L A + + Sbjct: 124 TDGDERARHFGFMSACFG----FGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCF 179 Query: 416 FAPET 420 PE+ Sbjct: 180 LLPES 184
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.6 bits (69), Expect = 0.012 Identities = 58/311 (18%), Positives = 97/311 (31%), Gaps = 16/311 (5%) Query: 68 QLIVAPVAGSRIGSANARRVTLCVLTTSLLLTGSLFTLSLLGLLGVKLILAHALAI-GVS 126 Q APV G + RR L V L G+ +++ +L + G++ Sbjct: 56 QFACAPVLG-ALSDRFGRRPVLLVS-----LAGAAVDYAIMATAPFLWVLYIGRIVAGIT 109 Query: 127 SAVETPARQVLLLTSLQDATHTSNAVAMNTMVYNVGRMVGPTIAGFVYPTLGPRTSFAIY 186 A T A + + D + + + G + GP + G + P F Sbjct: 110 GA--TGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLM-GGFSPHAPFFAA 166 Query: 187 AL--ALCFMAACVRSIRTATVDRPSRAESGLRDAVGYVLSDAFS--ARYLPILACIGLFA 242 A L F+ C + +R L + + + A + + + L Sbjct: 167 AALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVG 226 Query: 243 GSYQTLVPLLADQGFHDAARFTGVFFACAGAGSLSAAVLLSSAFGPRAS-RRFIAYAPWT 301 L + + FH A G+ A G A +++ R RR + Sbjct: 227 QVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIA 286 Query: 302 AVGALAVLAATTDAAGSIPAFYALGFSLTFAATSTNATIQRQCPEHVRGGLVGMYGMAYN 361 +LA T + P L + A + RQ E +G L G + Sbjct: 287 DGTGYILLAFATRGWMAFPIMVLLASG-GIGMPALQAMLSRQVDEERQGQLQGSLAALTS 345 Query: 362 GTMPFGYLLVG 372 T G LL Sbjct: 346 LTSIVGPLLFT 356
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 312 bits (801), Expect = e-104 Identities = 141/472 (29%), Positives = 233/472 (49%), Gaps = 33/472 (6%) Query: 9 AWHELVRRYRDVWRHCWKRRHWMTLPAFDANEAEFLPAALSVQAAPVSPAGRWVARILTL 68 + E + RY+ VW WK R + P + +E EFLPA L + PVS R VA + Sbjct: 7 GFSEFLLRYKLVWSETWKIRKQLDTPVREKDENEFLPAHLELIETPVSRRPRLVAYFIMG 66 Query: 69 LVTTAILWSYFGKIDIVVDGGGKIIPSVRTKTLAAVEVASVRALHVRDGQIVKTGDALID 128 + A + S G+++IV GK+ S R+K + +E + V+ + V++G+ V+ GD L+ Sbjct: 67 FLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKGDVLLK 126 Query: 129 LDTRVIDAERQRANGDRLNAVLQVERARALIDAIDTGR--------PPRLADVEGVSPER 180 L +A+ + L A L+ R + L +I+ + P +V R Sbjct: 127 LTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQNVSEEEVLR 186 Query: 181 RREVERHLLDQWRD-----------FVARRDRLDSEVHRYGQAAPLAARRADDYARLMRT 229 + + W++ A R + + ++RY + + R DD++ L+ Sbjct: 187 LTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSLLHK 246 Query: 230 GDVAEHAWIEAEQQRIDMAGQLADARHQRAAL--------------VAETRRNIQDALND 275 +A+HA +E E + ++ +L + Q + + I D L Sbjct: 247 QAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQ 306 Query: 276 AQRIVDASSGDMRRAEAHGELLRLTAPIDGTVQQLAVHTIGTAVPAAQPLMQIVPREGAV 335 + + ++ + E + + AP+ VQQL VHT G V A+ LM IVP + + Sbjct: 307 TTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTL 366 Query: 336 EMEAFVDNRDIGFVKEGQVASVKIDAFEYTKYGTVSAIVSHVSRDAIDDDKKGLVYSVRI 395 E+ A V N+DIGF+ GQ A +K++AF YT+YG + V +++ DAI+D + GLV++V I Sbjct: 367 EVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLDAIEDQRLGLVFNVII 426 Query: 396 MLDRSALVVDGREIALSPGMSGSAEIRTGTRRVIEYVLSPLLQHARESLRER 447 ++ + L + I LS GM+ +AEI+TG R VI Y+LSPL + ESLRER Sbjct: 427 SIEENCLSTGNKNIPLSSGMAVTAEIKTGMRSVISYLLSPLEESVTESLRER 478
>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature. Length = 1541 Score = 33.9 bits (77), Expect = 0.003 Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 8/122 (6%) Query: 33 AASAPVASGVGAAAPAISLPDAIAQLKQMQAELDRIKQQTSTASNSKELDALDDSAQEL- 91 A + A ++ + Q+ + + QT+ + ++ + + E Sbjct: 1058 ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETE 1117 Query: 92 -STDVAKLQSDLTPQRAQVQAQLDVLGPAPAEGAAPEAPAV-AKQRAALDARKTQIDAAL 149 + +V K+ S ++P++ Q + AE A P V K+ + + Sbjct: 1118 KTQEVPKVTSQVSPKQEQSETVQ-----PQAEPARENDPTVNIKEPQSQTNTTADTEQPA 1172 Query: 150 KQ 151 K+ Sbjct: 1173 KE 1174
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 45.2 bits (107), Expect = 3e-07 Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 9/143 (6%) Query: 59 VAPGLVKSGILSATTHGLFGTTGVASFIAALFSGLFIGTIACGFLADRFGRRAIFTWSLL 118 V PGL++ + S +G +A F G L+DRFGRR + SL Sbjct: 27 VLPGLLRDLVHSNDVTAHYGI-----LLALYALMQFACAPVLGALSDRFGRRPVLLVSLA 81 Query: 119 WYTAANVVMAFQDTATGLNFWRFVVGLGLGVEMVTIGTYISELVPKQIRGRAFACEQA-- 176 +MA L R V G+ G G YI+++ R R F A Sbjct: 82 GAAVDYAIMATAPFLWVLYIGRIVAGIT-GATGAVAGAYIADITDGDERARHFGFMSACF 140 Query: 177 -VGFVAVPVVAFLAYLLVPHAPL 198 G VA PV+ L PHAP Sbjct: 141 GFGMVAGPVLGGLMGGFSPHAPF 163
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 91.4 bits (227), Expect = 8e-23 Identities = 72/323 (22%), Positives = 119/323 (36%), Gaps = 47/323 (14%) Query: 20 AGAQSSITLYGLISAGVGFATNQGGKNAWQALSGT-----NQNPRWGLKGKEDLGQGLSA 74 A + +TLYG I AGV + + A A T + + G KG+EDLG GL A Sbjct: 15 VAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKA 74 Query: 75 VFQLENGFNVMTGTAAQNGREFGRMAYVGLADRTYGALTFGRQYDAIHDYIGPVIIASNG 134 ++Q+E ++ A + R +++GL +G L GR + D S Sbjct: 75 IWQVEQKASI----AGTDSGWGNRQSFIGLK-GGFGKLRVGRLNSVLKDTGDINPWDSKS 129 Query: 135 VNIGDNDNGYNDIRVQNSVKYVSPVHYGLKFTALYGFSNTTGFANNSAYSFGLGYERGPL 194 +G N + R+ SV+Y SP GL + Y ++ G N+ +Y G Y+ G Sbjct: 130 DYLGVNKIAEPEARLI-SVRYDSPEFAGLSGSVQYALNDNAGRHNSESYHAGFNYKNGGF 188 Query: 195 RWSVVYAQYNHPYSATNQDGAIANDYASPLLIFSKSAMSPAAYASRQRIAGTGGFYTIGR 254 A H N + + Y Sbjct: 189 FVQYGGAYKRHHQVQENVNIEKYQIHR------------------------LVSGYDND- 223 Query: 255 AQFAAMFTDVR-YDYLDNSHLHLQNLGVNVVY-----TMTPQLFLGAAYAFTNGK-YDVI 307 A +A++ + ++ ++ H V +TP++ +YA +D Sbjct: 224 ALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRV----SYAHGFKGSFDAT 279 Query: 308 DKRPKWHQVNLQADYFLSKRTDV 330 + + QV + A+Y SKRT Sbjct: 280 NYNNDYDQVVVGAEYDFSKRTSA 302
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 88.3 bits (219), Expect = 1e-21 Identities = 74/369 (20%), Positives = 125/369 (33%), Gaps = 67/369 (18%) Query: 24 AQSSVTLYGILDAGITYVNNTGGSHVVKFDDGVA-----YGNRFGLKGTEDLGGGLKAVF 78 A + VTLYG + AG+ + + G++ G KG EDLG GLKA++ Sbjct: 17 AMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIW 76 Query: 79 TLESGFHLGNGQLGFGGAEFGRQAYVGLQNDWGTLSFGNQLDITNELVSIYNISAWGSGY 138 +E G RQ+++GL+ +G L G + L +I+ W S Sbjct: 77 QVEQ----KASIAGTDSGWGNRQSFIGLKGGFGKLRVGRLNSV---LKDTGDINPWDSKS 129 Query: 139 AIHQGDFDRFNGDRLPNSVKFLSNDLSGFKFGAMYSFGNVAGNFHRNSAWSAGASFTKGD 198 + RL SV++ S + +G Y+ + AG H + ++ AG ++ G Sbjct: 130 DYLGVNKIAEPEARL-ISVRYDSPEFAGLSGSVQYALNDNAG-RHNSESYHAGFNYKNGG 187 Query: 199 FSIGAAYTRLNNPNGIYAFDPYAMIGTHTFLGQQTVTVDPATGARTDLFANTPMDVDSQG 258 F + + Q+ V ++ R Sbjct: 188 FFVQYGGAYKRHHQ-----------------VQENVNIEKYQIHRL------------VS 218 Query: 259 TFGIGTSYTIGKLTLDANYSYTTIKGFGQSSHMQVYEGGGLYQF-----TPALSFIAGYQ 313 + Y + SH E + TP +S+ G++ Sbjct: 219 GYDNDALYASVAVQQQDAKLVE-----ENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFK 273 Query: 314 HTRF---EGHHWNQGTAGLHYLLSKRTDIYISGDYLRASQGVDAVVGYSFTPSTTQTQAD 370 + + ++Q G Y SKRT +S +L+ +G T Sbjct: 274 GSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGES---------KFVSTAGG 324 Query: 371 VRIGMRHSF 379 V G+RH F Sbjct: 325 V--GLRHKF 331
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 31.7 bits (72), Expect = 0.005 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 14/270 (5%) Query: 70 MFALTLVVGQVADRYDRRRIATICQSVEALAAGVFLLGAVQGWLAAPAVYAL--AAIVGT 127 FA V+G ++DR+ RR + + S+ A ++ AP ++ L IV Sbjct: 56 QFACAPVLGALSDRFGRRPV--LLVSLAGAAVDYAIMAT------APFLWVLYIGRIVAG 107 Query: 128 ARAFESPSVSSLLPAVVPRTDLPRATALSTSANQAAQILGPAFGGLLYGVGAPVAFGTSV 187 + + + + R ++ + GP GGL+ G F + Sbjct: 108 ITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAA 167 Query: 188 AAFAVAAMLSGTIPLRSAPPAREPVTLRSV--FSGIAFIRREPAILGALSLDLFAVLFGG 245 A + + + S R P+ ++ + + R + +++ L G Sbjct: 168 ALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQ 227 Query: 246 A-TALLPIYARDILQVGPWGLG-ALRAAPAVGALAGTLWLTRFPLKGRPGRAMFGGVIAF 303 AL I+ D +G +L A + +LA + + RA+ G+IA Sbjct: 228 VPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIAD 287 Query: 304 GIATIVFGLSRHFALSLVALAALGASDVIS 333 G I+ + ++ + L + + Sbjct: 288 GTGYILLAFATRGWMAFPIMVLLASGGIGM 317
>THERMOLYSIN#Thermolysin metalloprotease (M4) family signature. Length = 544 Score = 63.5 bits (154), Expect = 1e-12 Identities = 89/488 (18%), Positives = 167/488 (34%), Gaps = 65/488 (13%) Query: 109 VVTSERNDADFTVVRLQQQAAGLPVYGSDIAVTVAKDGRILYVASNTIGGVVA-TTRKSQ 167 ++ ++ ++ TV+R +Q A G+ + V DG + ++ I + T + Sbjct: 78 LIGNKLDELGHTVMRFEQAIAASLCMGAVLVAHV-NDGELSSLSGTLIPNLDKRTLKTEA 136 Query: 168 AVDQQQALDRARAYLGVSGFTHL-------DAQLVAFVDQAGTHTAWKVRGRPQDGPKGD 220 A+ QQA A+ + +LV + D+ A++V R G+ Sbjct: 137 AISIQQAEMIAKQDVADRVTKERPAAEEGKPTRLVIYPDEETPRLAYEVNVRFLTPVPGN 196 Query: 221 WELLIDSGSGEVLRAEDKAFYA-TDGTGFVFRPDPLSPTKSSYGSTGYKDSSDADSTQLT 279 W +ID+ G+VL ++ A G V + + G Y + T + Sbjct: 197 WIYMIDAADGKVLNKWNQMDEAKPGGAQPVAGTSTVGVGRGVLGDQKYIN------TTYS 250 Query: 280 AARVRVTLKELAQSGTRYTLTGPYAACVDFDAPLDKACP----SQSTPAFEFTRGNLYFE 335 + L++ + +T +D P + F + Sbjct: 251 SYYGYYYLQDNTRGSGIFT----------YDGRNRTVLPGSLWADGDNQFF---ASYDAA 297 Query: 336 AVNVYYH---IDTFLRYVNQTLGIKALPYQYTGGVQYDPHGESGDDNSSYSSSSGRLTFG 392 AV+ +Y+ + + + V+ L V Y G +N+ ++ S + +G Sbjct: 298 AVDAHYYAGVVYDYYKNVHGRLSYDGSNAAIRSTVHYG----RGYNNAFWNGSQ--MVYG 351 Query: 393 QGGVDD----AEDADVVIHELGHGIHDWVTNGGLSQQEG-LSEGTGD---YLAAAYSRDF 444 G + DVV HEL H + D+ + G ++E D L Y+ Sbjct: 352 DGDGQTFLPFSGGIDVVGHELTHAVTDYTAGLVYQNESGAINEAMSDIFGTLVEFYANRN 411 Query: 445 NQWSPSDAQYHWVYNWDG----HNEFWGGRVTNWNVGRTYAQARGAEIHTAGQY------ 494 W + Y D + G +++ T Q G +G Sbjct: 412 PDWEIGEDIYTPGVAGDALRSMSDPAKYGDPDHYSKRYTGTQDNGGVHTNSGIINKAAYL 471 Query: 495 ---WASCNLVARDAIGAQAMDKAFLKGLSM-TNSSTNQKAAAQAVLTAASALGYS-SAQL 549 V+ IG M K F + L ++N A + AA+ L S S ++ Sbjct: 472 LSQGGVHYGVSVTGIGRDKMGKIFYRALVYYLTPTSNFSQLRAACVQAAADLYGSTSQEV 531 Query: 550 TAIGNAYN 557 ++ A+N Sbjct: 532 NSVKQAFN 539
>TYPE4SSCAGA#Type IV secretion system CagA exotoxin signature. Length = 1147 Score = 30.8 bits (69), Expect = 0.009 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 96 GGIPFELHSP-DDMSLIGVVVEPELMQQIEDAADVRLDARALRHGVVE 142 G P + H DD+S +G+ EL Q+I++ +A+A G +E Sbjct: 940 AGFPLKRHDKVDDLSKVGLSRNQELAQKIDNLNQAVSEAKAGFFGNLE 987
>BLACTAMASEA#Beta-lactamase class A signature. Length = 286 Score = 369 bits (949), Expect = e-131 Identities = 118/270 (43%), Positives = 162/270 (60%), Gaps = 1/270 (0%) Query: 41 AAAAADAIAPAAAATTLADLERDAGGRLGVCAIDTASGR-VIEHRAGERFPFCSTFKAML 99 A A + E GR+G+ +D ASGR + RA ERFP STFK +L Sbjct: 13 ATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVL 72 Query: 100 SAAVLAQSVERPGLLQQRVTYTKADLVNYSPVSEKHVGSGMTVAALCEAAIQYSDNSAAN 159 AVLA+ L++++ Y + DLV+YSPVSEKH+ GMTV LC AAI SDNSAAN Sbjct: 73 CGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAAN 132 Query: 160 LLMKLIGGPSAVTAYARSIGDDAFRLDRWETELNTALPGDPRDTTTPAAMAASLRVLTLG 219 LL+ +GGP+ +TA+ R IGD+ RLDRWETELN ALPGD RDTTTPA+MAA+LR L Sbjct: 133 LLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTS 192 Query: 220 DALPAAQRAQLVAWLRGNKVGDKRMRAGVPAGWVVGDKTGTGDYGTTNDAGVIWPTSRAP 279 L A + QL+ W+ ++V +R+ +PAGW + DKTG G+ G ++ P ++A Sbjct: 193 QRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVALLGPNNKAE 252 Query: 280 IVLAVYYTQTRADARAKDDVIASVARIVAQ 309 ++ +Y T A ++ IA + + + Sbjct: 253 RIVVIYLRDTPASMAERNQQIAGIGAALIE 282
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 24.0 bits (52), Expect = 0.048 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%) Query: 9 LLISLVLVAIVVYPYVRIVRRTGHSGWWILTMFVPVLNFVMLWVFAFARW 58 L +++LV +V+Y +++ +R T I T+ VPV V+L FA Sbjct: 344 LFEAIMLVFLVMYLFLQNMRAT-----LIPTIAVPV---VLLGTFAILAA 385
>PF06580#Sensor histidine kinase Length = 349 Score = 39.5 bits (92), Expect = 2e-05 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 23/108 (21%) Query: 350 LLNNLVDNAIRYA----GEGARVDVSARIDGTTPVLEVADDGPGIPEAERTDVWERFYRG 405 L+ LV+N I++ +G ++ + D T LEV + G + + Sbjct: 259 LVQTLVENGIKHGIAQLPQGGKILLKGTKDNGTVTLEVENTGSLALKNTK---------- 308 Query: 406 EGAQAATSSGSGLGLSIV-KRIAEQHRASVALGTTRGGRGLTVTVRFP 452 +G GL V +R+ + + + + V P Sbjct: 309 --------ESTGTGLQNVRERLQMLYGTEAQIKLSEKQGKVNAMVLIP 348
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 93.0 bits (231), Expect = 3e-24 Identities = 31/127 (24%), Positives = 59/127 (46%) Query: 2 RVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGLS 61 +L+ +DD I + L Q L + G+ V + + A L++ D+ +P+ + Sbjct: 5 TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64 Query: 62 VLAALRRRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRRHAG 121 +L +++ +LP ++++A++ I + GA DYL KPF+L EL+ I Sbjct: 65 LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124 Query: 122 RAQTTLA 128 R Sbjct: 125 RPSKLED 131
>ACETATEKNASE#Acetate kinase family signature. Length = 400 Score = 357 bits (919), Expect = e-124 Identities = 152/398 (38%), Positives = 226/398 (56%), Gaps = 16/398 (4%) Query: 5 VLVLNAGSSSLKFSVYDTREDRSLDAGLHGQVENLHDTPHLFVTDAEGATLADSAVARPG 64 +LV+N GSSSLK+ + ++++ L GL E + +T Sbjct: 3 ILVINCGSSSLKYQLIESKDGNVLAKGL---AERIG-INDSLLTHNANGEKIKIKKDMKD 58 Query: 65 HQGAI-EALHAWFAAHVG---REAAFDGVGHRVVHGGPYFTAPVRIDARVLDAIASLAPL 120 H+ AI L A + G + D VGHRVVHGG YFT+ V I VL AI L Sbjct: 59 HKDAIKLVLDALVNSDYGVIKDMSEIDAVGHRVVHGGEYFTSSVLITDDVLKAITDCIEL 118 Query: 121 APLHQPHHVDAIRAVAAVAPNLPQVACFDTAFHATVPALEREFALPRAL-TEQGIVRYGF 179 APLH P +++ I+A + P++P VA FDTAFH T+P + +P T+ I +YGF Sbjct: 119 APLHNPANIEGIKACTQIMPDVPMVAVFDTAFHQTMPDYAYLYPIPYEYYTKYKIRKYGF 178 Query: 180 HGLSYEYIATALAA-LDPSWMQHRTVVAHLGNGASLCALANGRSVATTMGFTAVDGLPMG 238 HG S++Y++ A L+ + + HLGNG+S+ A+ NG+S+ T+MGFT ++GL MG Sbjct: 179 HGTSHKYVSQRAAEILNKPIESLKIITCHLGNGSSIAAVKNGKSIDTSMGFTPLEGLAMG 238 Query: 239 TRTGALDPGVILYLQRHTGRSLDEVEHLIYAESGLLGVSGVSSDMRTLLASDA----PSA 294 TR+G++DP +I YL S +EV +++ +SG+ G+SG+SSD R L + A Sbjct: 239 TRSGSIDPSIISYLMEKENISAEEVVNILNKKSGVYGISGISSDFRDLEDAAFKNGDKRA 298 Query: 295 AHAVELFAYRAARELAALAGVLGGLDTLVFTAGIGEHAPRVRERICRRAAWLGIVLDDAA 354 A+ +FAYR + + + A +GG+D +VFTAGIGE+ P +RE I +LG LD Sbjct: 299 QLALNVFAYRVKKTIGSYAAAMGGVDVIVFTAGIGENGPEIREFILDGLEFLGFKLDKEK 358 Query: 355 N-AAGLP-VISSDASRVTVRVIPTDENLMIARHTRRVL 390 N G +IS+ S+V V V+PT+E MIA+ T +++ Sbjct: 359 NKVRGEEAIISTADSKVNVMVVPTNEEYMIAKDTEKIV 396
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 50.8 bits (121), Expect = 1e-09 Identities = 44/185 (23%), Positives = 67/185 (36%), Gaps = 7/185 (3%) Query: 6 KRGLVVGIANGQSIAWGCARAFCRAGATL-AVTWQSDKTLPHVEPLFAQLDAPIRMPLDV 64 K + G A G I AR GA + AV + +K V L A+ P DV Sbjct: 9 KIAFITGAAQG--IGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADV 66 Query: 65 GRPDQMAAVFDAIAVQWGAIDFVLHSVAYAPKADLQGRVVDSSPEGFSLAMDTSCHSFIR 124 + + I + G ID +++ + + FS+ S F Sbjct: 67 RDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSV---NSTGVFNA 123 Query: 125 MARLAEPLMT-RGGSLMAMSYLGAEQVVANYGVMGPVKAALEASVRYLAAELGGAGIRVN 183 +++ +M R GS++ + A + KAA + L EL IR N Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183 Query: 184 AVSPG 188 VSPG Sbjct: 184 IVSPG 188
>TCRTETB#Tetracycline resistance protein TetB signature. Length = 458 Score = 115 bits (289), Expect = 4e-30 Identities = 86/407 (21%), Positives = 166/407 (40%), Gaps = 15/407 (3%) Query: 9 LIVACAL-FMESVDANIIVTALPAMARDFGHNPVTLNIAITAYVVGLGVFIPICGWLADR 67 LI C L F ++ ++ +LP +A DF P + N TA+++ + + G L+D+ Sbjct: 16 LIWLCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQ 75 Query: 68 FSARAVFRTAIGIFVVGSLMCAASNS-LGVLTFARFIQGVGGAMMVPVGRIIIFRAVPRA 126 + + I I GS++ +S +L ARFIQG G A + +++ R +P+ Sbjct: 76 LGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKE 135 Query: 127 DLVRAMNYLAIPALFGPTVGPLVGGFITTYLHWRMIFFINVPIGIYGIYLASKHIANTHE 186 + +A + G VGP +GG I Y+HW + I + I I + K + Sbjct: 136 NRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPM-ITIITVPFLMKLLKKEVR 194 Query: 187 PDPGPLDWFGFLLSASGAALLLMGLTLIDGSLTSRSNAIIMCAAGAAMLALYVPYARRKE 246 G D G +L + G ++ T S +I ++V + R+ Sbjct: 195 IK-GHFDIKGIILMSVGIVFFMLFTT---------SYSISFLIVSVLSFLIFVKHIRKVT 244 Query: 247 RPVLDLSFLKIPTYHASVVGGSLFRIGLGAVPFLLPLALQEGLGMSAFHSG-LITCASAL 305 P +D K + V+ G + + ++P +++ +S G +I + Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304 Query: 306 GGAVSRSTATHTLRRFGFRTVLIYNAAFAGLAIAAYGVFHPGMATWAIWLIVLVGGIFPA 365 + + R G VL F ++ + + +IV V G Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIGVTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLSF 364 Query: 366 LQFTSLNSMIYADISPRDAGRATSLGSVVQQMSLGLGVTVAGLVLHV 412 + T +++++ + + ++AG SL + +S G G+ + G +L + Sbjct: 365 TK-TVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 53.9 bits (129), Expect = 3e-11 Identities = 28/181 (15%), Positives = 66/181 (36%), Gaps = 13/181 (7%) Query: 9 PRQRRSVATVDAIVEAAARILERDGFAGYTTNAVAALAGVSIGSLYQYFPNRDALTAALV 68 ++ + T I++ A R+ + G + + +A AGV+ G++Y +F ++ L + + Sbjct: 4 KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63 Query: 69 ERESAHLLDDVD----------RAAALSSCDDVLRALVRGAVAHQMRRPVLARLIDFEEA 118 E +++ + + VL + V + + + E Sbjct: 64 ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123 Query: 119 RLPLGART---ERVADRIHATLLHALRLRDAPRVAAPDVVAHDLLAIVKGIVDAAGARGE 175 + A+ DRI TL H + + P A + + G+++ + Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183 Query: 176 T 176 + Sbjct: 184 S 184
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 226 bits (578), Expect = 2e-77 Identities = 82/220 (37%), Positives = 129/220 (58%), Gaps = 10/220 (4%) Query: 6 NPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLF 65 N ++LIA++A + PF T + K +V ++R+ALG+QQ+P N+ LNG+AL+LS+F Sbjct: 3 NDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMF 62 Query: 66 IMAPVGMSIRDALQARHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTA 125 +M P+ + + S + D L +D+L+ ++ + +FF Sbjct: 63 VMWPIMHDAYVYFEDEDVTFNDI---SSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQ 119 Query: 126 TSVWPKNRA-------DGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANI 178 D I+ + L+P++ L+E+ AF+IGF +Y+ F+VVDL+V+++ Sbjct: 120 LKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSV 179 Query: 179 LLALGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 LLALGM M+SP TIS P KL+LFVALDGW+LL GL+L Y Sbjct: 180 LLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219
>FLGMOTORFLIN#Flagellar motor switch protein FliN signature. Length = 137 Score = 54.5 bits (131), Expect = 2e-11 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 312 VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGV 371 V L EL T M + EL L G+V+ L + + ++ NG LI G ++ V K GV Sbjct: 62 VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPL-DILINGYLIAQGEVVVVADKYGV 120 Query: 372 RVVTLTQPAPRER 384 R+ + P+ R R Sbjct: 121 RITDIITPSERMR 133 Score = 29.9 bits (67), Expect = 0.007 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 189 ALAVFFAAAPAALADARAAYANL---PVPLVFEIGRTELTTAELADVVGGDIIAIER 242 A AVF ++ A + PV L E+GRT +T EL + G ++A++ Sbjct: 35 ADAVFQQLGGGDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDG 91
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 121 bits (305), Expect = 2e-35 Identities = 79/255 (30%), Positives = 120/255 (47%), Gaps = 14/255 (5%) Query: 16 GRVVLVTGAAQGIGAAIARRFAESDAFVAVADLNGDAAAAQADALASAGGDARAYRVDAA 75 G++ +TGAAQGIG A+AR A A +A D N + +L + A A+ D Sbjct: 8 GKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVR 67 Query: 76 SRGDLDALVAAVERDGGRLDVVIHNAAYFPLTPFMQIDEPTLDRTLSVNLSALFWLAQAA 135 +D + A +ER+ G +D++++ A + + + T SVN + +F +++ Sbjct: 68 DSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSV 127 Query: 136 LPAFQRAGAGRLLVTSSVTG--PRVVYPGLAHYAASKAGVNGFIRAAALELARRNVTVNG 193 +G ++ S PR +A YA+SKA F + LELA N+ N Sbjct: 128 SKYMMDRRSGSIVTVGSNPAGVPRT---SMAAYASSKAAAVMFTKCLGLELAEYNIRCNI 184 Query: 194 VEPGMIRTPAAGNL-----GDASV----AAQIAHDIPLARMGEPEDIANAMLFLASADAA 244 V PG T +L G V IPL ++ +P DIA+A+LFL S A Sbjct: 185 VSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAG 244 Query: 245 YITGQTIVVDGGATL 259 +IT + VDGGATL Sbjct: 245 HITMHNLCVDGGATL 259
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 79.7 bits (196), Expect = 5e-20 Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 26/253 (10%) Query: 5 LKGKAVAITGGFGHLGVATAAWLGERGARVALIGRGA-----APAAQTLPGVPADALRIG 59 ++GK ITG +G A A L +GA +A + ++ A+A Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPA- 64 Query: 60 GIDLVDPQAAVQALDTVNREFGRVDALLNIAGAFVWQTIADGDAATWDRMYELNVKTALN 119 D+ D A + + RE G +D L+N+AG I W+ + +N N Sbjct: 65 --DVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFN 122 Query: 120 ASKAALPYLVASQAGRIVNIGAGAAFKAGAGMGAYAAAKAGVTRLTEALAAELLDRGVTV 179 AS++ Y++ ++G IV +G+ A M AYA++KA T+ L EL + + Sbjct: 123 ASRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 180 NALLPSIIDTPPNRKDMPDAD------------------FSRWVRPEQLAATIGFLLSAD 221 N + P +T D + + +P +A + FL+S Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 222 AQAITGASIPVSG 234 A IT ++ V G Sbjct: 243 AGHITMHNLCVDG 255
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 85.7 bits (212), Expect = 2e-21 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 1 MTQPTILIVEDEQAIADTIVYALGTDGMQTVHCTLAQAALDRLRDTHVDLVVLDVGLPDL 60 MT TIL+ +D+ AI + AL G + A + DLVV DV +PD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 61 SGFEVCRRLRT-FTDIPVIFLTARHDEIDRIV-GLEIGADDYVVKPFSPRELAARVRVIL 118 + F++ R++ D+PV+ ++A + + E GA DY+ KPF EL + L Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSA-QNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRAL 119 Query: 119 RRFHRTAAPEPAPA 132 R + + Sbjct: 120 AEPKRRPSKLEDDS 133
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 70.2 bits (172), Expect = 2e-15 Identities = 78/355 (21%), Positives = 117/355 (32%), Gaps = 45/355 (12%) Query: 21 AQTSGSVTLYGTVDTGIIYSTNQQFTRADGSTGGGHAWQMGGGNLVPSRFGFQGAEPLGG 80 VTLYGT+ G+ S + + G + S+ GF+G E LG Sbjct: 15 VAAMADVTLYGTIKAGVETSRSVA-HNGAQAASVETG---TGIVDLGSKIGFKGQEDLGN 70 Query: 81 GLDAVFTLEQQFLSANGQALQGGTAFSRQAWVGLRQEGIGTLGLGRQYDSYTDMLGAYVS 140 GL A++ +EQ+ A +RQ+++GL+ G G L +GR D Sbjct: 71 GLKAIWQVEQK----ASIAGTDSGWGNRQSFIGLKG-GFGKLRVGRLNSVLKD----TGD 121 Query: 141 SNNWSTPYGSHLGDVDNLNAAFNFNNAVKFTSADFNGLTFGGTFSFGGQAGDFSAKRGYA 200 N W +LG V+ + +V++ S +F GL+ ++ AG Y Sbjct: 122 INPW-DSKSDYLG-VNKIAEPEARLISVRYDSPEFAGLSGSVQYALNDNAG-RHNSESYH 178 Query: 201 VAATYTRAPVAFSVGYLDLHQPLDAALGGASSYIGDFACSNPGAMYCLLQDAGSMRAFGA 260 Y G Y + Y D ++ A A Sbjct: 179 AGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKY----QIHRLVSGY----DNDALYASVA 230 Query: 261 GGSVTLGAATVALTYTHTRLGDSRYFSTAAQPRTQAFTFDIGELNVTYMFTPALQGGVAY 320 A V Y+H AA + G + TP + A+ Sbjct: 231 --VQQQDAKLVEENYSHN-----SQTEVAAT-----LAYRFGNV------TPRV--SYAH 270 Query: 321 IFNAAHTDGRGTTRYHQVNVGANYSLSKRTALYAVAIGQVASGTGLGTDADGNAA 375 F + Y QV VGA Y SKRT+ V+ G + G G Sbjct: 271 GFKGSFDATNYNNDYDQVVVGAEYDFSKRTSAL-VSAGWLQEGKGESKFVSTAGG 324
>VACCYTOTOXIN#Helicobacter pylori vacuolating cytotoxin signature. Length = 1291 Score = 30.4 bits (68), Expect = 0.009 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%) Query: 62 APTVEHFASVWANGIGAPLFNSLLVGFGTTLLALALAFPA 101 AP E +VWAN IG NS G +L + A Sbjct: 1016 APKYEKPTNVWANAIGGTSLNS---GGNASLYGTSAGVDA 1052
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 29.2 bits (65), Expect = 0.017 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 4/114 (3%) Query: 10 VTASDVAARAGVSRSAVSRAFSPTASIAPQTRERVMVAARAL--GYQVNLIARDMITQRS 67 + ++A AGV+R A+ F + + + E L YQ + R Sbjct: 32 TSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLRE 91 Query: 68 SMIGVVTAGFENPFRARLLSDLMAALGQRALTPLVTNAED--PRQVRQSLEQLL 119 +I V+ + R L+ + +V A+ + +EQ L Sbjct: 92 ILIHVLESTVTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTL 145
>SACTRNSFRASE#Streptothricin acetyltransferase signature. Length = 173 Score = 37.6 bits (87), Expect = 7e-06 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%) Query: 41 EPTDAAAVLVRIDDGRAYVAVDPQGTCVGFAFYRLLDAQRLYLEELDVAPSHAGQRIGAR 100 E AA L +++ C+G R +E++ VA + + +G Sbjct: 61 EEEGKAAFLYYLEN-----------NCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTA 109 Query: 101 LIEQVIARAAREHVEQVVLSTFRDAPWNAP---YYARLGFRIID-DTAL 145 L+ + I A H ++L T N +YA+ F I DT L Sbjct: 110 LLHKAIEWAKENHFCGLMLETQDI---NISACHFYAKHHFIIGAVDTML 155
>OMPTIN#Omptin serine protease signature. Length = 317 Score = 33.4 bits (76), Expect = 0.001 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 17/119 (14%) Query: 235 AAVVTVGTFHAGTAPNVIPETATLQLSVRSLDAATRDEVEARIRRIADAQARAYGTVAQV 294 + + +F + + P+ +S+ +L T++ V +A+ R V+Q+ Sbjct: 11 TTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERV-----YLAEEGGR---KVSQL 62 Query: 295 DYQAISRVVVNDAA--AADLAVETITALA-GAGGLTLLADGVMGSEDFSWMTERVPGCY 350 D++ N+AA + + + ++ GA G T L D WM PG + Sbjct: 63 DWK------FNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTW 115
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 54.8 bits (132), Expect = 2e-10 Identities = 65/323 (20%), Positives = 117/323 (36%), Gaps = 46/323 (14%) Query: 43 VALYGSVDMGINYQS-VGGRSTWQTQSG-----GEWTSKFGFFGRENLGGGWRAEFNLES 96 V LYG++ G+ V + SK GF G+E+LG G +A + +E Sbjct: 21 VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQ 80 Query: 97 GFLANNGAQQDTQSFFNRQSWIGLMSDRYGRLRLGKQIGTGLPLFIDVFGTVGTNSVYTW 156 + A D+ NRQS+IGL +G+LR+G+ + D +S + Sbjct: 81 K---ASIAGTDSGW-GNRQSFIGLKGG-FGKLRVGRLNS----VLKDTGDINPWDSKSDY 131 Query: 157 LGAAAVQTARGVGYNSDLGPGATQLPARVDN---AITYRTPIVAGTTTLMLMYAPSNVAG 213 LG + A + ++ Y +P AG + + YA ++ AG Sbjct: 132 LGVNKI--------------------AEPEARLISVRYDSPEFAGLSG-SVQYALNDNAG 170 Query: 214 RAPAASAQGALLQWYNGTTYLAASY---NQVWGVNGASTVRNDLYGLGAVYDTGRLVLSA 270 R + + A + NG ++ + + ++ L + YD L S Sbjct: 171 R-HNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEKYQIHRLVSGYDNDALYASV 229 Query: 271 SFNQYAPKLAGDGIARVYT--LGTIVPFGVNAVRASIVYRDTSGVRDAAGRPAKDSALGV 328 + Q KL + + + + + V + Y + V Sbjct: 230 AVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFK-GSFDATNYNNDYDQV 288 Query: 329 MLGYDYLLSKRTGLYARTGFIRN 351 ++G +Y SKRT G+++ Sbjct: 289 VVGAEYDFSKRTSALVSAGWLQE 311
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 30.6 bits (69), Expect = 0.014 Identities = 75/359 (20%), Positives = 136/359 (37%), Gaps = 52/359 (14%) Query: 82 IGAYADRVGRKPALVLTVALMALGTGIIGFAPTYAQIGIAAPLLIVIGRLLQGFSAGGEV 141 +GA +DR GR+P L++++A A+ I+ AP ++ IGR++ G + G Sbjct: 63 LGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLW--------VLYIGRIVAGIT-GATG 113 Query: 142 GAATTLLMESGGARRSGELVSWQMASQGGAALAGALVALTLSRWLPSDALQGWGWRVPFV 201 A + + + A G +AG ++ + + P PF Sbjct: 114 AVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSP---------HAPFF 164 Query: 202 LGLLIGPVGFYLRRHLDDTLPHPAAGAPRVSRRIPWRQVAAGTLLVIGGTSTMYTIVFFL 261 + + F L LP G R P R+ A L M + + Sbjct: 165 AAAALNGLNFLTGCFL---LPESHKG-----ERRPLRREALNPLASFRWARGMTVVAALM 216 Query: 262 PSFLTLTL--GMPASVALLSG--------------CTAGAVM--LVGSPFAGRFADRLRR 303 F + L +PA++ ++ G A ++ L + G A RL Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276 Query: 304 RKPMLRTVCAISTALVLPAFHAMRTWPSVVTVLAVVVVLIGLMTLSSPAGFVMILEALRP 363 R+ ++ + A T +L AF A R W + ++VL+ + PA M+ + Sbjct: 277 RRALMLGMIADGTGYILLAF-ATRGW-----MAFPIMVLLASGGIGMPALQAMLSRQVDE 330 Query: 364 EVRATSLGMIYALGVTIFGGFAQLIVSALWRATGSFYAPAWYVLAGGSASLVGLALFRE 422 E + G + AL ++ L+ +A++ A+ + W +AG + L+ L R Sbjct: 331 ERQGQLQGSLAAL-TSLTSIVGPLLFTAIYAASIT-TWNGWAWIAGAALYLLCLPALRR 387
>HTHTETR#TetR bacterial regulatory protein HTH signature. Length = 215 Score = 68.9 bits (168), Expect = 2e-16 Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 12/205 (5%) Query: 9 PSKRRTRGRPLADASVGPDVILRAARRTFAKRGYDATSVREVARELGIDAALIAHHFGTK 68 K + + IL A R F+++G +TS+ E+A+ G+ I HF K Sbjct: 2 ARKTKQEAQETRQH------ILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDK 55 Query: 69 ETLWLAVVEQIVELAEPMFDALRALRASSLPH--RDRVRRALELCVDHEFAEPDI--GMF 124 L+ + E + +A R+ + LE V E + +F Sbjct: 56 SDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTV-TEERRRLLMEIIF 114 Query: 125 FSTAATEEGGRLDRLQERIVRPYHDAMFPLLADAVEAGAIRP-VDPNVLFFMIASAIGTT 183 E + + Q + +D + L +EA + + ++ I Sbjct: 115 HKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGL 174 Query: 184 VSYSHMMLEYTSLPTRPEAFREAVL 208 + + L + +L Sbjct: 175 MENWLFAPQSFDLKKEARDYVAILL 199
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 75.9 bits (186), Expect = 2e-18 Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 18/258 (6%) Query: 8 RTAIVTGGSSGIGFAIASRLVQDGYRVAIVGRDAARLEAAVARLGGAAIGQVGDLSVRHD 67 + A +TG + GIG A+A L G +A V + +LE V+ L A + D Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 68 AEAVVAAIVARW----PRIDVLVNNAGLTGRVGADTKAGEAEAVWDAVLHANLKSLFLTT 123 + A+ I AR ID+LVN AG+ R G + E W+A N +F + Sbjct: 69 SAAI-DEITARIEREMGPIDILVNVAGVL-RPGLIHSLSDEE--WEATFSVNSTGVFNAS 124 Query: 124 MAVLPHVAD-RAARIVNIGSIAARAGSLLPGGLAYAAAKAGVEGFTVALARELGPRGATV 182 +V ++ D R+ IV +GS A AYA++KA FT L EL Sbjct: 125 RSVSKYMMDRRSGSIVTVGSNPAGVPRTSMA--AYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 183 NTVAPGYIAG-------TRFFGDSGVAPAVAAMIRVQTPVGRAGQPDDVADAVAWLAGPR 235 N V+PG G V + P+ + +P D+ADAV +L + Sbjct: 183 NIVSPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242 Query: 236 ASFVTGATIAVNGGWRVG 253 A +T + V+GG +G Sbjct: 243 AGHITMHNLCVDGGATLG 260
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 43.7 bits (103), Expect = 8e-07 Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 28/130 (21%) Query: 67 ELRPRVSGYLQRVAYKEGDVVAQGALLFEIDPRPYRIALDRANAQQQRARAAA------- 119 E++P + ++ + KEG+ V +G +L ++ + + +AR Sbjct: 98 EIKPIENSIVKEIIVKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILS 157 Query: 120 --------------------SLANVQLKRVQTLIDAH-ATSQEELDNARATAEQARADLQ 158 +++ ++ R+ +LI +T Q + ++ RA+ Sbjct: 158 RSIELNKLPELKLPDEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERL 217 Query: 159 AADAAVADAK 168 A + + Sbjct: 218 TVLARINRYE 227 Score = 43.7 bits (103), Expect = 1e-06 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 10/114 (8%) Query: 109 NAQQQRARAAASLANVQLKRVQTLIDAHATSQEELDNARATAE--------QARADLQAA 160 + + A L V +++ + +++EE + Q ++ Sbjct: 256 EQENKYVEAVNELR-VYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIGLL 314 Query: 161 DAAVADAKLNLGFTEVRAPIAGRV-GRAVATVGNLARADDTLLTTVVSQDPVYV 213 +A + + +RAP++ +V V T G + +TL+ V D + V Sbjct: 315 TLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTAETLMVIVPEDDTLEV 368
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 1000 bits (2586), Expect = 0.0 Identities = 433/1045 (41%), Positives = 621/1045 (59%), Gaps = 20/1045 (1%) Query: 4 SRFFIDRPIFAVVLSIVIFALGLISIPMLPAGEYPEVVPPSVVVRATYPGANPKEIAESV 63 + FFI RPIFA VL+I++ G ++I LP +YP + PP+V V A YPGA+ + + ++V Sbjct: 2 ANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTV 61 Query: 64 AEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLQGVDPDTAAVRVQNRVSQALSRLPDE 123 + +E+ +NG++ +MYM S + S GS+ + +TF G DPD A V+VQN++ A LP E Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQE 121 Query: 124 VRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIGDVGVYGSG 183 V+Q G++ +K S + LM S + + +Y+ +VKD LSRL G+GDV ++G Sbjct: 122 VQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG-A 180 Query: 184 DYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPSPKKNDFLVSINVRGRL 243 YAMR+WLD + L LT DVI ++ QN Q++AGQLG P+ SI + R Sbjct: 181 QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240 Query: 244 RTVQEFSDIVLRNGDDGQVVKLSDVARIELGAGDYTLRSYFNDRHSAVVGIFLSPGANAL 303 + +EF + LR DG VV+L DVAR+ELG +Y + + N + +A +GI L+ GANAL Sbjct: 241 KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300 Query: 304 DVAKAVYAKLDELSKRFPPGVAYRPVWDPTVFVRESIRAVQHTLIEAVVLVVLVVILFLQ 363 D AKA+ AKL EL FP G+ +D T FV+ SI V TL EA++LV LV+ LFLQ Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360 Query: 364 TWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNI 423 RA++IP +AVPV ++GTFA L GYSINTLT+FG+VLAIG++VDDAIVVVENVER + Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420 Query: 424 A-QGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMSGVTGQFYKQFAVTIAISTVI 482 L P++A ++M ++ G +V IA+VL AVF+PMAF G TG Y+QF++TI + + Sbjct: 421 MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480 Query: 483 SAINSLTLSPALAAKLLRPHGAPKDALTRALDRAFGWLFHPFNRFFERSSDRYHGVVGRT 542 S + +L L+PAL A LL+P A FGW FN F+ S + Y VG+ Sbjct: 481 SVLVALILTPALCATLLKPVSAEHHENKGGF---FGW----FNTTFDHSVNHYTNSVGKI 533 Query: 543 LKRRGVVFAVYAALLAATALLFNAVPGGFIPVQDKLYLFAGAKLPEGASLARTSAVTEQM 602 L G +YA ++A +LF +P F+P +D+ +LP GA+ RT V +Q+ Sbjct: 534 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 593 Query: 603 TKIALGT--DGVEMVPAFAGLNALQGVNTPNITNSYVILKPFDQRHR---TAAQINADLN 657 T L VE V G + N ++V LKP+++R+ +A + Sbjct: 594 TDYYLKNEKANVESVFTVNGFSF--SGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAK 651 Query: 658 ARFAAIDGGITYALMPPPIQGLGNGSGYSLYLEDRGGLGYGELQKALTAFQAAVAKTPGM 717 I G P I LG +G+ L D+ GLG+ L +A A+ P Sbjct: 652 MELGKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPAS 711 Query: 718 SYPV-SSYQANIPQLEVKVDRLKAKAQGVALTDLFNTLQVYLGSMYVNDFNVFGRVYRVM 776 V + + Q +++VD+ KA+A GV+L+D+ T+ LG YVNDF GRV ++ Sbjct: 712 LVSVRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLY 771 Query: 777 AQADAGHRQTAADIANLRTRNAKGEMVPIGSMVTVGPAYGPDPVVRYNGYPAADLIGDAD 836 QADA R D+ L R+A GEMVP + T YG + RYNG P+ ++ G+A Sbjct: 772 VQADAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAA 831 Query: 837 PKAMSSSQAIAKLQQIAKDVLPPGITLEWTDLSYQQVTQSNAAIVVFPLAVMLVFLVLAS 896 P SS A+A ++ +A LP GI +WT +SYQ+ N A + ++ ++VFL LA+ Sbjct: 832 PGT-SSGDAMALMENLASK-LPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAA 889 Query: 897 LYESWTLPLAVILIVPVCMCAALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILIVEFAR 956 LYESW++P++V+L+VP+ + L L N+V+ VGL+ +GL+ KNAILIVEFA+ Sbjct: 890 LYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAK 949 Query: 957 EL-EIQGKGVVEAALEACKLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAATGVTVFAG 1015 +L E +GKGVVEA L A ++RLRPI+MTS+AFI G +PL I +GAGS + A G+ V G Sbjct: 950 DLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGG 1009 Query: 1016 MLGVTLFGLFLTPVFYVAIRKLAGG 1040 M+ TL +F PVF+V IR+ G Sbjct: 1010 MVSATLLAIFFVPVFFVVIRRCFKG 1034 Score = 85.3 bits (211), Expect = 7e-19 Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 23/329 (6%) Query: 730 QLEVKVDRLKAKAQGVALTDLFNTLQ---VYLGSMYVNDFNVFGRVYRVMAQADAGHRQT 786 + + +D + D+ N L+ + + + + + Sbjct: 183 AMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRFKN 242 Query: 787 AADIANLRTR-NAKGEMVPIGSMVTVGPAYGPDP-VVRYNGYPAADLI----GDADPKAM 840 + + R N+ G +V + + V + R NG PAA L A+ Sbjct: 243 PEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDT 302 Query: 841 SSS--QAIAKLQQIAKDVLPPGITLEWTDLSYQQVTQSNAAI--VVFPL--AVMLVFLVL 894 + + +A+LQ P G+ + + Y +I VV L A+MLVFLV+ Sbjct: 303 AKAIKAKLAELQPF----FPQGMKVLYP---YDTTPFVQLSIHEVVKTLFEAIMLVFLVM 355 Query: 895 ASLYESWTLPLAVILIVPVCMCAALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILIVE- 953 ++ L + VPV + + G N G+V+ +GL +AI++VE Sbjct: 356 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415 Query: 954 FARELEIQGKGVVEAALEACKLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAATGVTVF 1013 R + EA ++ +V ++ A +P+ G+ + +T+ Sbjct: 416 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475 Query: 1014 AGMLGVTLFGLFLTPVFYVAIRKLAGGTP 1042 + M L L LTP + K Sbjct: 476 SAMALSVLVALILTPALCATLLKPVSAEH 504
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 74.9 bits (184), Expect = 5e-17 Identities = 58/423 (13%), Positives = 121/423 (28%), Gaps = 102/423 (24%) Query: 8 RPSVKGRVIALAIVALGIAALAYAY--HRTTAYPSTDDASIDADVVHVASPVGGRIVQLA 65 S + R++A I+ + A + + + + + ++ Sbjct: 52 PVSRRPRLVAYFIMGFLVIAFILSVLGQVEIVATANGKLTHSGRSKEIKPIENSIVKEII 111 Query: 66 VHENQRVAKGDLLYVIDPVPYRLTVAQAQADLELAR-------ASLDTRRR------SLI 112 V E + V KGD+L + + + Q+ L AR + L Sbjct: 112 VKEGESVRKGDVLLKLTALGAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLP 171 Query: 113 GERSNASVAAEQVKRATQNY-------------------------DLATRDVNRL----- 142 E +V+ E+V R T +NR Sbjct: 172 DEPYFQNVSEEEVLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSR 231 Query: 143 ---------APLAAQGYVSAQQF----------------DQAKVRQRDASVSLAQAQEQQ 177 + L + ++ ++++ Q ++ + A+ + Q Sbjct: 232 VEKSRLDDFSSLLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL 291 Query: 178 RAS---AQTIGDDADAIATLHAREAALARAQHALDDTVVRAPHDGLVTGLSVL-PGETLA 233 + + + LA+ + +V+RAP V L V G + Sbjct: 292 VTQLFKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVT 351 Query: 234 PNQSIFTLIDASEWFAV-GNFRETSLNRIAVGDCATV-YSMIDRSR--PLTGKVVGIGAG 289 +++ ++ + V + + I VG A + +R L GKV I Sbjct: 352 TAETLMVIVPEDDTLEVTALVQNKDIGFINVGQNAIIKVEAFPYTRYGYLVGKVKNINLD 411 Query: 290 IADSARINLPRSLPIVQNSVNWVHVAQRFPVRVKLDEP------DGKLVRVGASAIVEVR 343 + R+ L F V + ++E + G + E++ Sbjct: 412 AIEDQRLGLV------------------FNVIISIEENCLSTGNKNIPLSSGMAVTAEIK 453 Query: 344 HGS 346 G Sbjct: 454 TGM 456
>SECA#SecA protein signature. Length = 901 Score = 29.8 bits (67), Expect = 0.020 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 193 TRAAPGGTGDAKCGGNYAASLAAQAEAIREGCEQVVFLDAVERRWIEELGGMNV 246 T A GT D GG++ A +AA E E++ V + E GG+++ Sbjct: 504 TNMAGRGT-DIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHI 556
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 42.5 bits (100), Expect = 2e-06 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 42 GIISGALPLIARDFGLDYRAQE----LVAAAILLGAVIGALAGTRMSAAFGRRKTITIVS 97 G+I LP + RD L+A L+ + G +S FGRR + + Sbjct: 22 GLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG-ALSDRFGRRPVLLVSL 80 Query: 98 AIYAAGVLAAALSPDAWSLAASRLVLGFAVGGSTQIVPT-YIAELAEPDKRGRLVTYFNV 156 A A A +P W L R+V G + G+T V YIA++ + D+R R + + Sbjct: 81 AGAAVDYAIMATAPFLWVLYIGRIVAG--ITGATGAVAGAYIADITDGDERARHFGFMSA 138 Query: 157 SIGIGILLAALIG 169 G G++ ++G Sbjct: 139 CFGFGMVAGPVLG 151
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 89.9 bits (223), Expect = 3e-22 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61 IL+ DD L+ L GY V + + + +A D+V+ D +MPD + F+ Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFDL 65 Query: 62 CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRSR 121 RIK+ LPV+ M+A ++ G DY+ KP EL IG + + Sbjct: 66 LPRIKK--ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 AQLYA 126 + Sbjct: 124 RRPSK 128
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 74.1 bits (182), Expect = 1e-15 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 931 RRTILVVDDLDDQRDIVVQLLTPLGFDVAEAASGTDALRWLAMHTADAIIMDISMPLMDG 990 TILV DD R ++ Q L+ G+DV ++ RW+A D ++ D+ MP + Sbjct: 3 GATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENA 62 Query: 991 YETSRLISENQLSNAPIVLLSANAFADDRDRASATGCKGYLVKPLQVNLLLDKLAQLLAL 1050 ++ I + + P++++SA +AS G YL KP + L+ + + LA Sbjct: 63 FDLLPRIKK-ARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAE 121
>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature. Length = 331 Score = 101 bits (253), Expect = 2e-26 Identities = 76/395 (19%), Positives = 138/395 (34%), Gaps = 68/395 (17%) Query: 1 MKKYLAIPAAVACLLASAAHAQSSVTLYGTIDAGLDYISNQKSAAGAGPVYGVQSGNVST 60 MKK L I +A L +A + VTLYGTI AG++ + +G V Sbjct: 1 MKKSL-IALTLAALPVAAM---ADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDL 56 Query: 61 -SRWGLRGNEDLGGGLAAVFTLENGFNVANGKLGNGGDEFGRQAWVGLASRQWGTVTLGR 119 S+ G +G EDLG GL A++ +E ++A G RQ+++GL +G + +GR Sbjct: 57 GSKIGFKGQEDLGNGLKAIWQVEQKASIA----GTDSGWGNRQSFIGLKG-GFGKLRVGR 111 Query: 120 QYDFLVDF--VAPLSATGSGFGGNLADHPYDNDNLANDTRMNNAVKFRSANYGGFTFGGA 177 L D + P + G N P + R+ + ++ S + G + Sbjct: 112 LNSVLKDTGDINPWDSKSDYLGVNKIAEP--------EARLISV-RYDSPEFAGLSGSVQ 162 Query: 178 YGFSNQGGGFSNDNAYSVGAQYVNGPVDLAVAYLQSNQPGGVDAPQNTGGSLSSADGDAM 237 Y ++ G N +Y G Y NG + Sbjct: 163 YALND-NAGRHNSESYHAGFNYKNGGFFVQYGGAYKR----------------HHQVQEN 205 Query: 238 LTGGRWRTFGAGAHYAFDHAAI-GFVYTRTILNDPRELSQGGAYGRVNGQLLTFSNYELN 296 + +++ + Y D+ A+ V + + + ++ T + N Sbjct: 206 VNIEKYQIHRLVSGY--DNDALYASVAVQQQDAKL--VEENYSHNSQTEVAATLAYRFGN 261 Query: 297 GRYFLTPAFSLGGAYTFTQGRFDDADHGIAPKWNQFMLQADYALSRRTDLYLEGVYQRVT 356 ++ A G++ + + ++Q ++ A+Y S+RT + + + Sbjct: 262 VTPRVSYAHGFKGSF----DATNYNND-----YDQVVVGAEYDFSKRTSALVSAGWLQ-- 310 Query: 357 GADGVAVLGHAGIFNLAASGNDRQAVVAAGIRHKF 391 G G+RHKF Sbjct: 311 EGKG--------------ESKFVSTAGGVGLRHKF 331
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 35.6 bits (82), Expect = 3e-04 Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 6/148 (4%) Query: 117 ELDQQLQQARADLQSSLANEKLAASTAARWTRMLAQDSVSQQETDEKSSDLAAKQAIVAA 176 E + + +A +L+ + + S V+Q +E L + Sbjct: 256 EQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQL--VTQLFKNEILDKLRQTTDNIGL 313 Query: 177 NEANVRRLDALEAFKRIVAPFDGVVTARKT-DIGQLISAGGGAGPELFAVSDVHRMRVYV 235 + + + + I AP V K G +++ + V + + V Sbjct: 314 LTLELAKNEERQQASVIRAPVSVKVQQLKVHTEGGVVTTA---ETLMVIVPEDDTLEVTA 370 Query: 236 SVPQNEAAAIRPGMTATLTVPEHPGETF 263 V + I G A + V P + Sbjct: 371 LVQNKDIGFINVGQNAIIKVEAFPYTRY 398 Score = 34.4 bits (79), Expect = 7e-04 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 11/103 (10%) Query: 85 IHAQVSGYLHAWYTDIGAHVKSGQLLGLIDTPELDQQLQQARADLQSSLANEKLAASTAA 144 I + + G V+ G +L + A AD + ++ A Sbjct: 99 IKPIENSIVKEIIVKEGESVRKGDVLLKLTAL-------GAEADTLKTQSSLLQARLEQT 151 Query: 145 RWTRMLAQDSVSQQETDEKSSDLAAKQAIVAANEANVRRLDAL 187 R+ + S S + L + +E V RL +L Sbjct: 152 RYQIL----SRSIELNKLPELKLPDEPYFQNVSEEEVLRLTSL 190
>ACRIFLAVINRP#Acriflavin resistance protein family signature. Length = 1034 Score = 641 bits (1655), Expect = 0.0 Identities = 247/1079 (22%), Positives = 435/1079 (40%), Gaps = 68/1079 (6%) Query: 4 IVRLALTRPYTFVVLALLILIAGPLAAVRTPIDIFPDIRIPVISVVWNYAGLQPDDMSGR 63 + + RP VLA+++++AG LA ++ P+ +P I P +SV NY G + Sbjct: 1 MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60 Query: 64 VITYYERTLGTTVNDVQHIESQSFR-GYGIVKIFFQPTVDIRTATAQVTSISQTVLKQMP 122 V E+ + ++++ ++ S S G + + FQ D A QV + Q +P Sbjct: 61 VTQVIEQNM-NGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLP 119 Query: 123 PGTTPPQILNYNASTVPVLQIALTSNTLDEQK--LGDYAVNFIRPQLLSVPGVAIPTPYG 180 I +S+ ++ S+ + + DY + ++ L + GV +G Sbjct: 120 QEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFG 179 Query: 181 GKTREVQIDLDPQALQSKGLSAQDVAHALAQQNQIIPAGT------QKIGRFEYNIKLNN 234 + ++I LD L L+ DV + L QN I AG + +I Sbjct: 180 AQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT 238 Query: 235 SPLSLDALNDLPIKSVG-GTTIYIRDVAHVRDGYPPQGNIVRVDGHRAVLMSILKNGSAS 293 + + + ++ G+ + ++DVA V G I R++G A + I A+ Sbjct: 239 RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGAN 298 Query: 294 TLDIIAGVKAKLPLVEQTLPPGLKLVTMGDQSTFVNGAVSGVAREGIIAAALTSLMILLF 353 LD +KAKL ++ P G+K++ D + FV ++ V + A L L++ LF Sbjct: 299 ALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLF 358 Query: 354 LGSWRSTLIIAASIPLAVLSAIALLAATGETLNVMTLGGLALAVGILVDDATVTIENV-N 412 L + R+TLI ++P+ +L A+LAA G ++N +T+ G+ LA+G+LVDDA V +ENV Sbjct: 359 LQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 418 Query: 413 WHLEQGKDTRTAIVDGAKQIVMPALVSLLCICIVFVPMLMLDGISRFLFVPMAKAVIFSM 472 +E + A QI + + + VF+PM G + ++ + ++ +M Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478 Query: 473 VSSFVLSRTFVPMLAQYLLKPHASAGHASGELAAVMDPHAGHAGAHDVPPSRNPLVRFQR 532 S +++ P L LLKP ++ H F Sbjct: 479 ALSVLVALILTPALCATLLKPVSAEHH-------------------------ENKGGFFG 513 Query: 533 AFERRFESVRASYRILLGLALTRRKPFVVAFLCIVAASFLLAPSLGRNFFPTIDSGEIAL 592 F F+ Y +G L +++ + IVA +L L +F P D G Sbjct: 514 WFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLT 573 Query: 593 HVRAPVGTRVEETAAELDRIENTIRGVIPPAQLREVIDNIGLPNSGINLTYNNSGTLGPQ 652 ++ P G E T LD++ + L+ N+ + +++ Sbjct: 574 MIQLPAGATQERTQKVLDQVTDYY--------LKNEKANVESVFTVNGFSFSGQ---AQN 622 Query: 653 DGDILISL-----SRDHAPTADYV-HTLRERLPRAYPGTTFSFLPADIVSQILNFGAPAP 706 G +SL +A+ V H + L + G F IV L Sbjct: 623 AGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVE--LGTATGFD 680 Query: 707 VDLQVAGPNQQANLAYAHELYRKLR--LIAGVADPRIQQASTYPQFTVTVDRTRADQLGI 764 +L L A + A + R QF + VD+ +A LG+ Sbjct: 681 FELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGV 740 Query: 765 TEQDVTNSVVATLAGTSQVDPTYWLNPRNGVSYPIVAQTPQYRMTTLSALQNLPVTGANG 824 + D+ ++ L GT D G + Q + L V ANG Sbjct: 741 SLSDINQTISTALGGTYVNDFI-----DRGRVKKLYVQADAKFRMLPEDVDKLYVRSANG 795 Query: 825 QSQLLGGLATITRGVGNAVVSHYNIEPLFDIYATTQGRDLGAVATDIDDVVKATAKDLPK 884 + T G+ + YN P +I G + D +++ A LP Sbjct: 796 EMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAP---GTSSGDAMALMENLASKLPA 852 Query: 885 GSTVTLRGQVQTMNGAFAGLLLGLVGAIVLIYLLIVVNFHSWADAFVIVSALPAALAGIV 944 G G + + + V+++L + + SW+ ++ +P + G++ Sbjct: 853 GIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVL 912 Query: 945 WMLFTTHTPLSVPALTGAILCMGVATANSILVVSFARERLAETGNALASA-LEAGFTRFR 1003 + V + G + +G++ N+IL+V FA++ + + G + A L A R R Sbjct: 913 LAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLR 972 Query: 1004 PVLMTALAMIIGMAPMALGLGDGGEQNAPLGRAVIGGLACATIATLFFVPVVFSLVHRR 1062 P+LMT+LA I+G+ P+A+ G G +G V+GG+ AT+ +FFVPV F ++ R Sbjct: 973 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRRC 1031 Score = 92.6 bits (230), Expect = 5e-21 Identities = 93/535 (17%), Positives = 189/535 (35%), Gaps = 50/535 (9%) Query: 550 GLALTRRKPFVVAFLCIVAASFLLAPSLGRNFFPTIDSGEIALHVRAPVGTRVEETAAEL 609 + R V + ++ A L L +PTI +++ P G + + Sbjct: 3 NFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYP-GADAQTVQDTV 61 Query: 610 DR-IENTIRGVIPPAQLREVIDNIGLPNSGINLTYNNSGTLGPQDGDILISLSRDHAPTA 668 + IE + G+ + D+ G I LT+ D I+ + Sbjct: 62 TQVIEQNMNGIDNLMYMSSTSDSAGS--VTITLTFQ-------SGTDPDIAQVQ------ 106 Query: 669 DYVHTLRERLPRAYPGTTFSFLPADIVSQILNFGAPAPVDLQV------AGPNQQANLAY 722 ++ +L A P LP ++ Q ++ + L V Q +++ Sbjct: 107 -----VQNKLQLATP-----LLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISD 156 Query: 723 --AHELYRKLRLIAGVADPRIQQASTYPQFTVTVDRTRADQLGITEQDVTNSVVATLA-- 778 A + L + GV D +Q + +D ++ +T DV N + Sbjct: 157 YVASNVKDTLSRLNGVGD--VQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQI 214 Query: 779 GTSQVDPTYWLNPRNGVSYPIVAQTPQYRMTTLSALQNLPV-TGANGQSQLLGGLATITR 837 Q+ T L P ++ I+AQT R + + ++G L +A + Sbjct: 215 AAGQLGGTPAL-PGQQLNASIIAQT---RFKNPEEFGKVTLRVNSDGSVVRLKDVARVEL 270 Query: 838 GVGN-AVVSHYNIEP--LFDIYATTQGRDLGAVATDIDDVVKATAKDLPKG-STVTLRGQ 893 G N V++ N +P I T L A I + P+G + Sbjct: 271 GGENYNVIARINGKPAAGLGIKLATGANAL-DTAKAIKAKLAELQPFFPQGMKVLYPYDT 329 Query: 894 VQTMNGAFAGLLLGLVGAIVLIYLLIVVNFHSWADAFVIVSALPAALAGIVWMLFTTHTP 953 + + ++ L AI+L++L++ + + + A+P L G +L Sbjct: 330 TPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYS 389 Query: 954 LSVPALTGAILCMGVATANSILVVSFARERLAETGNALASALEAGFTRFRPVLMTALAMI 1013 ++ + G +L +G+ ++I+VV + E A E ++ + L+ ++ Sbjct: 390 INTLTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVL 449 Query: 1014 IGM-APMALGLGDGGEQNAPLGRAVIGGLACATIATLFFVPVVFSLVHRRDALKH 1067 + PMA G G ++ +A + + L P + + + + + +H Sbjct: 450 SAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEH 504
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 84.5 bits (209), Expect = 4e-21 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 2/139 (1%) Query: 2 AHILTIEDDPLIADHIAHTLRAAGHQIDVARTGRDGMARAMSANYDVVTLDRMLPDLDGL 61 A IL +DD I + L AG+ + + + + D+V D ++PD + Sbjct: 4 ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63 Query: 62 TILATMRGVGLDTPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRRRP 121 +L ++ D PVLVMSA + I+ G DYL KPF L E+ I + Sbjct: 64 DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123 Query: 122 RGARVETVLRAGELALDLV 140 R R + + + LV Sbjct: 124 R--RPSKLEDDSQDGMPLV 140
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 97.8 bits (243), Expect = 1e-26 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%) Query: 3 VSKKFAAVTGAGSGIGRAAAIALARAGFTVALLGRTEASLSETQNAIRAAGGDAQVFPVD 62 + K A +TGA GIG A A LA G +A + L + ++++A A+ FP D Sbjct: 6 IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65 Query: 63 VTDEASVDHAFAQIAQRFGRLDVLFNNAGRNAPVVALDEYELDVWNSVVATNLTGVFLCA 122 V D A++D A+I + G +D+L N AG P + + W + + N TGVF + Sbjct: 66 VRDSAAIDEITARIEREMGPIDILVNVAGVLRP-GLIHSLSDEEWEATFSVNSTGVFNAS 124 Query: 123 RAAWRLMKTQTPQGGRIINNGSISAHAPRPDTIAYTATKHAVTGITKSLALDGRRYNIAC 182 R+ + M + + G I+ GS A PR AY ++K A TK L L+ YNI C Sbjct: 125 RSVSKYMMDR--RSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRC 182 Query: 183 GQIDIGNAATALTERM 198 + G+ T + + Sbjct: 183 NIVSPGSTETDMQWSL 198
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 45.6 bits (108), Expect = 4e-08 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 7/156 (4%) Query: 8 TRLRVLLVTDTDKPIGELGDALARLGYEMLNDVATPARLPAAVEEQRPDVVIIDTDSPSR 67 T +L+ D L AL+R GY++ + A L + D+V+ D P Sbjct: 2 TGATILVADDDAAIRTVLNQALSRAGYDVRI-TSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 68 DTLEQLAVMHATAPR-PVLMFSHDADQELIRAAVGAGVSAYLVEGLSAERLAPILEVALA 126 + + L + P PVL+ S A G YL + L I+ ALA Sbjct: 61 NAFDLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALA 120 Query: 127 RFSHDDALRRRLADVEREL-----AERKLIDRAKRV 157 + + L A +++ R+ Sbjct: 121 EPKRRPSKLEDDSQDGMPLVGRSAAMQEIYRVLARL 156
>TCRTETA#Tetracycline resistance protein signature. Length = 399 Score = 38.3 bits (89), Expect = 5e-05 Identities = 69/312 (22%), Positives = 116/312 (37%), Gaps = 28/312 (8%) Query: 40 PLMPLIAREFHLTAAQVANINI--AAVAAT-IAVRLLVGPLCDRFGPRRVYAGLLLLGAI 96 P++P + R+ + A+ I A A A ++G L DRFG R V L A+ Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV 85 Query: 97 PVFAVSFTHDYLWFLICRLGIGAIGA-GFVITQYHTSVMFAPNVVGTANATTAGWGNAGA 155 ++ I R+ G GA G V Y A G A G+ +A Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAY-----IADITDGDERARHFGFMSACF 140 Query: 156 GATQALMPLLVAAGLMLGFGEDSSWRIALVVPGVAMLAMAWAYWRFTQDCPQGDFVALRK 215 G P+L GLM GF + + A + G+ L + + +G+ LR+ Sbjct: 141 GFGMVAGPVL--GGLMGGFSPHAPFFAAAALNGLNFLTGCF----LLPESHKGERRPLRR 194 Query: 216 QGVTVDSGKKGGWASFFRACGNYRVWMLFVTYGACFGVEVFIHNIAALYYVDHFKLSLKD 275 + + + + WA ++ V + +V + ++ D F Sbjct: 195 EALNPLASFR--WARGMTVVA----ALMAVFFIMQLVGQVPA-ALWVIFGEDRFHWDATT 247 Query: 276 AGFAVGMFGLLALFARALGGWLSDKIAARRSLDVRATLLCALIIGEGLGLIWFSHAQGIG 335 G ++ FG+L A+A+ ++ +AAR L +I +G G I + A Sbjct: 248 IGISLAAFGILHSLAQAM---ITGPVAARLG---ERRALMLGMIADGTGYILLAFATRGW 301 Query: 336 MALVAMLAFGLF 347 MA M+ Sbjct: 302 MAFPIMVLLASG 313
>SECBCHAPRONE#Bacterial protein-transport SecB chaperone protein signature. Length = 170 Score = 28.7 bits (64), Expect = 0.004 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 4/56 (7%) Query: 10 TRVCPLDD----IVPNTGVCALVNGEQVAVFHVAHADGGVFAIDNVDPVSQAAVMS 61 T + D + N V + F GVF I ++ + A ++ Sbjct: 55 TEAKQVGDDLYEVCLNISVETTMESSGDVAFICEVKQAGVFTISGLEEMQMAHCLT 110
>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature. Length = 261 Score = 95.9 bits (238), Expect = 8e-26 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 6/184 (3%) Query: 4 KRILITGAGTGFGREVALRLAERGHDVTAGVRTAVEIDALTDAAAQRGTALRAVKLDVTS 63 K ITGA G G VA LA +G + A +++ + + A DV Sbjct: 9 KIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRD 68 Query: 64 A------YDRARAAELDVDVLVNNAGVGEAGALVDLPVEIVRELFDVNVFGPLELTQQIA 117 + R +D+LVN AGV G + L E F VN G ++ ++ Sbjct: 69 SAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128 Query: 118 RGMLARKHGKIVFVSSIAGLITGPFTGAYCASKHAIESVAEAMHAELAPHGIRVAVVNPG 177 + M+ R+ G IV V S + AY +SK A + + ELA + IR +V+PG Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188 Query: 178 PYRT 181 T Sbjct: 189 STET 192
>PF06580#Sensor histidine kinase Length = 349 Score = 32.9 bits (75), Expect = 0.006 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 16/154 (10%) Query: 438 WWMTFA----LTLASLALSLAKG---LAFVEAGVLGTLLVLLLVSRRRFNRHSSLLAERF 490 W+ TL + G L + + +L+ L+L R +R Sbjct: 13 WYCQGIGWGVYTLTGFGFASLYGSPKLHSMIFNIAISLMGLVLTHAYRS------FIKRQ 66 Query: 491 TVSWFVSVAMVLMLAVWVLFFAFRDVPYTRDLWSHFSFDARAPRALRATLAAGVF---VA 547 ++L + + +W +F P A LA + V Sbjct: 67 GWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTKPVAFTLPLALSIIFNVVV 126 Query: 548 LFALWQLLRPAPGRFVKPAQQDLIDAEQIIRAQE 581 + +W LL F Q ++ + AQE Sbjct: 127 VTFMWSLLYFGWHFFKNYKQAEIDQWKMASMAQE 160
>PF06057#Type IV secretory pathway VirJ component Length = 243 Score = 307 bits (789), Expect = e-106 Identities = 73/211 (34%), Positives = 104/211 (49%), Gaps = 3/211 (1%) Query: 215 ELDVSDLPLVELPAKGGSDRLAIVISGDGGWRDLDKTIAEALQRDGVSVVGIDSLRYFWS 274 L V V + L I +SGDGGW LDK + LQ+ G VVG SL+Y+W Sbjct: 33 LLPVEPSTQVNAASSHTKPPLVIFLSGDGGWATLDKAVGGILQQQGWPVVGWSSLKYYWK 92 Query: 275 EKPPAQVSRDLARVMRTYMARWHASRVALVGYSFGADVMPFAYNRLPADLRDKVAVMSLL 334 +K P V++D ++ Y A + +V L+GYSFGA+V+PF N +PA R V LL Sbjct: 93 QKDPKDVTQDTLAIIDKYQAEFGTQKVILIGYSFGAEVIPFVLNEMPARYRKNVLGAVLL 152 Query: 335 GFAPSADFQIRVTGWLGMPASDKALKVAPEIAKVPPTLVQCFYGAEETDT--MCPALANT 392 + S+DF+I V+ + PE+ K + C YG E+ +CP + Sbjct: 153 SPSQSSDFEIHVSEMVTSDNQSARYLTLPEVNKQTTVPMLCLYGKEDDAPLHLCPEVKQP 212 Query: 393 GADVIKTQGDHHFGRDYIALEKKILGAFGKP 423 V++ G H F DY + K I G + KP Sbjct: 213 NVTVMELSGGHSFDDDYDKVVKLIKG-WLKP 242 Score = 39.8 bits (93), Expect = 1e-05 Identities = 17/76 (22%), Positives = 25/76 (32%) Query: 17 MMLAAAVCAAQPADVKAETVSGGRYGPVTVTKPSGPLRGFVVLFSREAGWHAADQQAADA 76 + A A + AD T+ S V+ S + GW D+ Sbjct: 14 LCSTANAFADEFADNLGLTLLPVEPSTQVNAASSHTKPPLVIFLSGDGGWATLDKAVGGI 73 Query: 77 LAKAGAMTVGVDSGRY 92 L + G VG S +Y Sbjct: 74 LQQQGWPVVGWSSLKY 89
>BCTERIALGSPF#Bacterial general secretion pathway protein F signature. Length = 408 Score = 66.8 bits (163), Expect = 2e-14 Identities = 53/267 (19%), Positives = 116/267 (43%), Gaps = 16/267 (5%) Query: 24 RKIEKMLSNGLPLLKVLEELELRASHDGRKPTLPEAILFGEWRRTVQNGGSLAEGMDGWV 83 R++ +++ +PL + L+ + + S L A+ R V G SLA+ M + Sbjct: 75 RQLATLVAASMPLEEALDAVA-KQSEKPHLSQLMAAV-----RSKVMEGHSLADAMKCFP 128 Query: 84 PQAEQM---IVLAGEQSGRLEGALRSVTGIVTSGRRIRNAIAQGLAYPVALLAMMLAYLY 140 E++ +V AGE SG L+ L + +++R+ I Q + YP L + +A + Sbjct: 129 GSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLTVVAIAVVS 188 Query: 141 LFGARLVPQFAA--IEDPERWHGSARLLYDLSVFVQAWLPECLIVVVVLVALLVWSMPRW 198 + + +VP+ I + S R+L +S V+ + P L+ ++ + + Sbjct: 189 ILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMAFRVMLRQE 248 Query: 199 SGRLR-SRFDNYAPW--SLYRLMVGSSFLTAFASMQAAGFTVEKSLAQLAD-HAKPWLRE 254 R+ R + P + R + + + + + A+ + +++ D + + R Sbjct: 249 KRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDVMSNDYARH 308 Query: 255 RIDDTLFGVKSGLNVGEAMRMSGHRFP 281 R+ V+ G+++ +A+ + FP Sbjct: 309 RLSLATDAVREGVSLHKALEQTA-LFP 334
>TYPE3IMQPROT#Type III secretion system inner membrane Q protein family signature. Length = 86 Score = 56.3 bits (136), Expect = 2e-14 Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 4 DTLIGLTSQGLLLCLYISLPAIIVSALSGLIVAFLQAITSLQDQTISHSVKLFAVIGTLL 63 D L+ ++ L L L +S IV+ + GL+V Q +T LQ+QT+ +KL V L Sbjct: 2 DDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLF 61 Query: 64 LTAGWGGTTILRFALRLL 81 L +GW G +L + +++ Sbjct: 62 LLSGWYGEVLLSYGRQVI 79
>TYPE3IMPPROT#Type III secretion system inner membrane P protein family signature. Length = 224 Score = 215 bits (548), Expect = 6e-73 Identities = 72/213 (33%), Positives = 117/213 (54%), Gaps = 7/213 (3%) Query: 10 LLIAVIAIGLIPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVTLYVMAP 69 L+ + L+PF+ T + K +V ++RNALG+QQ+P NM LNG+A+L++++VM P Sbjct: 7 LIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWP 66 Query: 70 IGMSAADTMRHEQLANSPAEIMVQAFGASQAPFRTFLKAHSRERERLFFMRSAHVIWPES 129 I A E + + + + +R +L +S FF + Sbjct: 67 IMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQYGE 126 Query: 130 LA-------NALHEDDLIVLAPAFTLTELADAFKIGFLLYIAFIIVDFVIANVLLAMGLN 182 + + + + L PA+ L+E+ AFKIGF LY+ F++VD V+++VLLA+G+ Sbjct: 127 ETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMM 186 Query: 183 QIQPTNVAIPFKLLLFVAMDGWSALIHGLILTY 215 + P ++ P KL+LFVA+DGW+ L GLIL Y Sbjct: 187 MMSPVTISTPIKLVLFVALDGWTLLSKGLILQY 219
>TYPE3OMOPROT#Type III secretion system outer membrane O protein family signature. Length = 303 Score = 59.2 bits (143), Expect = 5e-12 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 22/179 (12%) Query: 180 PAPLPARLGRIRVPGYLIVGEKALPIATLRRLRPGDVVLRFADPAFAGWDGAAPTHALAL 239 PA R +R P ++G + L R+ GDV+L A Sbjct: 138 PAVGGGRPKMLRWPLRFVIGSSDTQRSLLGRIGIGDVLLIRTSRAEV------------- 184 Query: 240 RWGVAGMHQYVAHATLDGPRLVLDTEPA-MTDRNDHPVPGAPDAETQTSLDELELPVSFE 298 + ++G +V + + + N+ AET L++L + + F Sbjct: 185 ---YCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTET----AETLPGLNQLPVKLEFV 237 Query: 299 IETVTLPLAQLSALRPGYVIELRGTLRDARIRLLAYGQLIGIGELVTVGEQLGVRVIDV 357 + + LA+L A+ ++ L T + + ++A G L+G GELV + + LGV + + Sbjct: 238 LYRKNVTLAELEAMGQQQLLSL-PTNAELNVEIMANGVLLGNGELVQMNDTLGVEIHEW 295
>PF05616#Neisseria meningitidis TspB protein Length = 501 Score = 27.4 bits (60), Expect = 0.050 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 67 PLRRPADADAPDDVLADTADP-PDTDADADDDLDADAPPAER 107 P PA+ AP++ +P PD D + D + D D P R Sbjct: 333 PAENPANNPAPNENPGTRPNPEPDPDLNPDANPDTDGQPGTR 374
>TYPE3IMSPROT#Type III secretion system inner membrane S protein family signature. Length = 354 Score = 284 bits (728), Expect = 3e-96 Identities = 114/348 (32%), Positives = 193/348 (55%), Gaps = 9/348 (2%) Query: 1 MSDEKTEQPTRRKLKEARKKGTVAKSVDLVAAVLVLVSLA-LFTFAWHPLLDALHQNISR 59 MS EKTEQPT +K+++ARKKG VAKS ++V+ L++ A L + + + Sbjct: 1 MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIP 60 Query: 60 AIDFCGS-ERSMHTLWSVLMHELANGAIACCAISVAAALAAALSIGAQVGLQVSFDPVMP 118 A +++ + + + L C + AAL A S Q G +S + + P Sbjct: 61 AEQSYLPFSQALSYV---VDNVLLEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKP 117 Query: 119 KMDRLSPAAGLKQIFSKRALIDLLKMSVKAVVIAAALWHVIVSLFPLITSAMAEPLAALS 178 + +++P G K+IFS ++L++ LK +K V+++ +W +I + + ++ Sbjct: 118 DIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKGNLVTLLQLPTCGIECIT 177 Query: 179 QILWHALLKLLFAAAVLFLVVGVVDWKIQHWLMMRAQRMSKDEVKRELKEREGEPKLKHE 238 +L L +L+ V F+V+ + D+ +++ ++ +MSKDE+KRE KE EG P++K + Sbjct: 178 PLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSK 237 Query: 239 RRKRAKELVNGGGESLSGAVGRANVVVVNPTHYAVALRYVRGETPLPVVLAKGIDDAARE 298 RR+ +E+ + ++ V R++VVV NPTH A+ + Y RGETPLP+V K D + Sbjct: 238 RRQFHQEIQS---RNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQT 294 Query: 299 IRALATQRGVPIVANPPVARALY-EVAEHRPIPSELFEVVAAILRWVE 345 +R +A + GVPI+ P+ARALY + IP+E E A +LRW+E Sbjct: 295 VRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE 342
>FLGMRINGFLIF#Flagellar M-ring protein signature. Length = 559 Score = 92.3 bits (229), Expect = 4e-23 Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 9/199 (4%) Query: 1 MNARIRIVGRASVHACVVLCVALCIALAGCKQE-LYGNLSEQDCNEIVAALLQAGIDAKK 59 + A RI + A V + VA+ + L+ NLS+QD IVA L Q I + Sbjct: 19 LRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRF 78 Query: 60 ESADGGKTWSAKVDDAHIVQAMNVLREHGLPAHKYDDLGDLFKKDGLVSTPTEERVRFIY 119 + G D H + L + GLP +L ++ + E+V + Sbjct: 79 AN--GSGAIEVPADKVH--ELRLRLAQQGLPKGGAVGF-ELLDQEKFGISQFSEQVNYQR 133 Query: 120 GVSQELSKTLSQIDGVMVARVHIVLPDNDPLAMHVKPSSASVFIKYLPTANL--AMIEPQ 177 + EL++T+ + V ARVH+ +P K SASV + P L I Sbjct: 134 ALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQIS-A 192 Query: 178 IKNLVVHSVEGLSYDKVSL 196 + +LV +V GL V+L Sbjct: 193 VVHLVSSAVAGLPPGNVTL 211
>FLGFLIH#Flagellar assembly protein FliH signature. Length = 228 Score = 28.6 bits (63), Expect = 0.022 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 12/76 (15%) Query: 163 QVRVHPDEHDAAVETFSHAVA--QWRARGQPVQLTVHADRTLDRGACVCDTDIGSVDASL 220 Q+RVHPD+ + ++ WR RG P TL G C D G +DAS+ Sbjct: 162 QLRVHPDDLQRVDDMLGATLSLHGWRLRGDP---------TLHPGGCKVSADEGDLDASV 212 Query: 221 KVQIDAV-RMAADAAL 235 + + R+AA + Sbjct: 213 ATRWQELCRLAAPGVV 228
>RTXTOXIND#Gram-negative bacterial RTX secretion protein D signature. Length = 478 Score = 29.8 bits (67), Expect = 0.006 Identities = 15/131 (11%), Positives = 40/131 (30%), Gaps = 6/131 (4%) Query: 4 RRAMAFSTIRNRLTRARAALRDTLAEQQRERDEADARLAEQQRVLTHAAQEVDRRAARID 63 R + + L +++ ER AR+ + + +D ++ Sbjct: 186 RLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSS--- 242 Query: 64 RLLDGHGPVRIDELLDWEKLLADAHARRARELDTLQQLRDGVAAINHAIGTTRTAILRHD 123 L + +L+ E +A L+Q+ + + T + +++ Sbjct: 243 --LLHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEY-QLVTQLFKNE 299 Query: 124 VRIDLCSARLD 134 + L + Sbjct: 300 ILDKLRQTTDN 310
>TYPE3IMRPROT#Type III secretion system inner membrane R protein family signature. Length = 261 Score = 137 bits (348), Expect = 1e-41 Identities = 47/240 (19%), Positives = 106/240 (44%), Gaps = 2/240 (0%) Query: 17 LSFMILVAVCGVRLLVLMTIFPPTGGELITKRIRNAMVVLWSIYVAYGQQALMTQLHGGF 76 LS++ L +R+L L++ P + KR++ + ++ + +A A + F Sbjct: 10 LSWLNLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFSFF 69 Query: 77 LLAVVVKEAVIGLVIAFVASPVFWVAEAVGTYIDDLTGYNNVQITNPSLGQQTTLTSTLL 136 L + V++ +IG+ + F F G I G + +P+ + + ++ Sbjct: 70 ALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLARIM 129 Query: 137 MQCATVAFWTLGGMTFLLGAVFQTYVWWPLGSLTPVPRAFIEAFVMQQTDSLMVTIAKLA 196 A + F T G +L+ + T+ P+G AF+ + + + + LA Sbjct: 130 DMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFL--ALTKAGSLIFLNGLMLA 187 Query: 197 GPAVLLLLLVDVGVGLLSRIASKLDLVSLAQPVKGALAVLLLALMIGMFIGQVKDQVALL 256 P + LLL +++ +GLL+R+A +L + + P+ + + L+A ++ + + + + Sbjct: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSEI 247
>PF05272#Virulence-associated E family protein Length = 892 Score = 28.9 bits (64), Expect = 0.009 Identities = 11/43 (25%), Positives = 14/43 (32%) Query: 109 DKSRWPTMADPEWAEALHAYYGSSPYWLIEEGETALDSPPYEA 151 + +AEALH Y Y+ E E P E Sbjct: 718 NLVWLQKFRGQLFAEALHLYLAGERYFPSPEDEEIYFRPEQEL 760
>CHANLCOLICIN#Channel forming colicin signature. Length = 522 Score = 28.9 bits (64), Expect = 0.013 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Query: 66 LEGVAIGAIVGLVGAALLYLGGLHSPLAWIGVPLVGGYVGALCGA 110 LE A A V V ALL+ + L G+ +V G + + Sbjct: 467 LEKKAADAGVSYV-VALLFSLLAGTTLGIWGIAIVTGILCSYIDK 510
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 91.0 bits (226), Expect = 2e-21 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 520 LDGQRVLVVDDDATSRTSLAAALETMGAQVSTARSGHDALEAVERQPPSVVLSDLAMPDG 579 + G +LV DDDA RT L AL G V + + +V++D+ MPD Sbjct: 1 MTGATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDE 60 Query: 580 DGYWLLDRIRRLPNGGGHLPVVAVTAHAGKADRRRVMAAGFDAYLCKPVDMPTLASVI 637 + + LL RI++ LPV+ ++A + G YL KP D+ L +I Sbjct: 61 NAFDLLPRIKKA---RPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGII 115
>HTHFIS#FIS bacterial regulatory protein HTH signature. Length = 484 Score = 326 bits (836), Expect = e-111 Identities = 124/344 (36%), Positives = 172/344 (50%), Gaps = 32/344 (9%) Query: 5 ANRTKQRADGRRLSGRSAAMRTLLGRIEKIAPTRASVMIAGESGVGKDIVARRLHDLSAR 64 + DG L GRSAAM+ + + ++ T ++MI GESG GK++VAR LHD R Sbjct: 127 SKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKR 186 Query: 65 HDGPFVPMNCGAIPAELAEAQLFGHEKGSFTGAITQREGFFEAARGGTLLLDEIAEMPAA 124 +GPFV +N AIP +L E++LFGHEKG+FTGA T+ G FE A GGTL LDEI +MP Sbjct: 187 RNGPFVAINMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMD 246 Query: 125 LQVKLLRAIESNTIVRVGGTEPIPLDVRFVSATRHNPADAVRDGRLREDLFYRLAAFAIY 184 Q +LLR ++ VGG PI DVR V+AT + ++ G REDL+YRL + Sbjct: 247 AQTRLLRVLQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLR 306 Query: 185 VPPLRQRDGDVEMIAQEFVDTLNARHRAHKRLTDAAIAALRAYSWPGNVRELHNTIERAY 244 +PPLR R D+ + + FV KR A+ ++A+ WPGNVREL N + R Sbjct: 307 LPPLRDRAEDIPDLVRHFVQQAEKEGLDVKRFDQEALELMKAHPWPGNVRELENLVRRLT 366 Query: 245 ILADEGI---------------DVALPKQALPAAESTAEGAM-------------ALPVG 276 L + + D + K A + + A+ ALP Sbjct: 367 ALYPQDVITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPS 426 Query: 277 ATLHHAQQRF----IAETLRHFDGNKPRAAKALGISLKTLYNRL 316 I L GN+ +AA LG++ TL ++ Sbjct: 427 GLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKI 470