PredictBias

		>BCTERIALGSPF#Bacterial general secretion pathway protein F

		           signature.

		          Length = 408

		

		 Score =  384 bits (988), Expect = e-134

		 Identities = 175/406 (43%), Positives = 268/406 (66%), Gaps = 2/406 (0%)

		

		Query: 1   MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALG 60

		           M  + ++A+DA G+  +G  EADSAR AR  LR +GL PL V+     Q+ + S  L+L 

		Sbjct: 1   MAQYHYQALDAQGKKCRGTQEADSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSLR 60

		

		Query: 61  R--KLSQREQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSL 118

		           R  +LS  + A+LTRQLA+L+ A +PL+EAL  + +Q+E+ ++ +LMAA+R++V+ GHSL

		Sbjct: 61  RKIRLSTSDLALLTRQLATLVAASMPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHSL 120

		

		Query: 119 ANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVT 178

		           A+A+   P  F  +Y A+VAAGE +G L  VL+RLADY E+R  ++ +I  A  YP ++T

		Sbjct: 121 ADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180

		

		Query: 179 VIALGIVTFLLSYVVPQVVNVFASTKQQLPLLTIVMMALSDFVRHWWWAILIGIAAVVYL 238

		           V+A+ +V+ LLS VVP+VV  F   KQ LPL T V+M +SD VR +   +L+ + A    

		Sbjct: 181 VVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFMA 240

		

		Query: 239 VKATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILSAAGVPILRALQAAGET 298

		            +  L ++  R++F R LL  PL G++ RG NT R+A TL IL+A+ VP+L+A++ +G+ 

		Sbjct: 241 FRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGDV 300

		

		Query: 299 LSNRAMRGNIEDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEG 358

		           +SN   R  +  A   VREG +L +AL     FPP++ H+I SGE +G++ +ML+RAA+ 

		Sbjct: 301 MSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAADN 360

		

		Query: 359 ESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMV 404

		           + RE   +      L EPLL+++M  +VL IVLA++ PI++LN ++

		Sbjct: 361 QDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTLM 406

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		           signature.

		          Length = 145

		

		 Score =  188 bits (480), Expect = 6e-65

		 Identities = 67/140 (47%), Positives = 94/140 (67%), Gaps = 3/140 (2%)

		

		Query: 10  QAARRQRGFTLIEIMVVVAILGILAALIVPKIMSRPDEARRIAAKQDIGTIMQALKLYRL 69

		           +A  +QRGFTL+EIMVV+ I+G+LA+L+VP +M   ++A +  A  DI  +  AL +Y+L

		Sbjct: 2   RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMYKL 61

		

		Query: 70  DNGRYPTQDQGLNALIQKPTTDPIPNNWKDGGYLERLPNDPWGNSYKYLNPGVHGEIDVF 129

		           DN  YPT +QGL +L++ PT  P+  N+   GY++RLP DPWGN Y  +NPG HG  D+ 

		Sbjct: 62  DNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADPWGNDYVLVNPGEHGAYDLL 121

		

		Query: 130 SYGADGKEGGESNDSDIGSW 149

		           S G DG+ G E    DI +W

		Sbjct: 122 SAGPDGEMGTE---DDITNW 138

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		           signature.

		          Length = 170

		

		 Score = 51.5 bits (123), Expect = 1e-10

		 Identities = 14/72 (19%), Positives = 26/72 (36%)

		

		Query: 48  RARGFTLLEMLVVLVIAGILVSVASLTLRRNPRTDLREEAQRVALLFETAGDEAQVRARP 107

		           R RGFTLLEM+++L++ G+   +  L    +      +   R                + 

		Sbjct: 2   RQRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQF 61

		

		Query: 108 IAWRTTDHGFRF 119

		                    ++F

		Sbjct: 62  FGVSVHPDRWQF 73

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 31.1 bits (70), Expect = 8e-04

		 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

		

		Query: 12 RSRGFTMIEVLVALAIIAIALAASIRAVGSMATSASDLHARLLAGWSADNALAQLRLA 69

		          R RGFT++E+++ L ++ ++       + +   S  D      A  +     AQLR  

		Sbjct: 2  RQRGFTLLEMMLILLLMGVSAGM---VLLAFPASRDD-----SAAQTLARFEAQLRFV 51

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		           signature.

		          Length = 145

		

		 Score = 34.9 bits (80), Expect = 9e-05

		 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

		

		Query: 28  ARRGERGFTLIEMMIAITILAVIA-ILSWRGLDQIIRGREKVAAAMEDERVFEQMFDQMR 86

		           A   +RGFTL+E+M+ I I+ V+A ++    +    +  ++   A+ D    E   D  +

		Sbjct: 3   ATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQK--AVSDIVALENALDMYK 60

		

		Query: 87  IDARRAATDDEAGQPAV 103

		           +D     T ++  +  V

		Sbjct: 61  LDNHHYPTTNQGLESLV 77

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score =  121 bits (306), Expect = 4e-32

		 Identities = 87/402 (21%), Positives = 163/402 (40%), Gaps = 18/402 (4%)

		

		Query: 30  LALGTFMEVLDTSIANVAVPTISGSLGVATSEGTWVISSYSVASAIAVPLTGWLARRVGE 89

		           L + +F  VL+  + NV++P I+       +   WV +++ +  +I   + G L+ ++G 

		Sbjct: 19  LCILSFFSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGI 78

		

		Query: 90  VRLFTLSVLAFTIASALCGLAENFES-LIAFRLLQGLVSGPMVPLSQTILMRSYPPAKRG 148

		            RL    ++     S +  +  +F S LI  R +QG  +     L   ++ R  P   RG

		Sbjct: 79  KRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRG 138

		

		Query: 149 LALGLWAMTVIVAPIFGPVMGGWITDNYTWPWIFYINLPIGMFSAACAFFLLR-GRETKT 207

		            A GL    V +    GP +GG I     W ++    +P  M +     FL++  ++   

		Sbjct: 139 KAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIP--MITIITVPFLMKLLKKEVR 194

		

		Query: 208 TKQRIDAIGLALLVIGVSCLQMMLDLGKDRDWFNSTFITSLALIAVVSLAFMLVWEATEK 267

		            K   D  G+ L+ +G+    +          F +++  S  +++V+S    +       

		Sbjct: 195 IKGHFDIKGIILMSVGIVFFML----------FTTSYSISFLIVSVLSFLIFVKHIRKVT 244

		

		Query: 268 EPVVDLSLFKDRNFALGAMIISFGFMAFFGSVVIFPLWLQTVMGYTAGLAGLATA-PVGF 326

		           +P VD  L K+  F +G +     F    G V + P  ++ V   +    G     P   

		Sbjct: 245 DPFVDPGLGKNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTM 304

		

		Query: 327 LALVLSPLIGRNMHRLDLRMVASFAFVVFAGVSIWNSTFTLDVPFNHVILPRLVQGIGVA 386

		             ++   + G  + R     V +   V F  VS   ++F L+     + +  +    G++

		Sbjct: 305 SVIIFGYIGGILVDRRGPLYVLNIG-VTFLSVSFLTASFLLETTSWFMTIIIVFVLGGLS 363

		

		Query: 387 CFFVPMTTITLSSISDERLASASGLSNFLRTLSGAIGTAVSS 428

		                ++TI  SS+  +   +   L NF   LS   G A+  

		Sbjct: 364 FTKTVISTIVSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVG 405

		

		

		>FLGMOTORFLIM#Flagellar motor switch protein FliM signature.

		          Length = 344

		

		 Score =  273 bits (699), Expect = 2e-92

		 Identities = 82/324 (25%), Positives = 160/324 (49%), Gaps = 10/324 (3%)

		

		Query: 5   EFMSQEEVDALLKGVTGEDDSADEPAESSG---IRPYNIATQERIVRGRMPGLEIINDRF 61

		           E +SQ+E+D LL  ++  D S ++    S    I  Y+    ++  + +M  L ++++ F

		Sbjct: 3   EVLSQDEIDQLLTAISSGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETF 62

		

		Query: 62  ARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPN 121

		           ARL    +   +R    + V+ V    Y EF R++P P+ L ++ + PL+G ++   DP+

		Sbjct: 63  ARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPS 122

		

		Query: 122 LVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYAVAWKSVRPLQFEFVR 181

		           + F ++D LFGG G+       RD T  E  ++  ++  +  +   +W  V  L+    +

		Sbjct: 123 ITFSIIDRLFGGTGQAAKVQ--RDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQ 180

		

		Query: 182 SEMHTQFANVATPNEIVIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEAL-- 239

		            E + QFA +  P+E+V++     + G   G ++ C+PY  IEPI   LSS     ++  

		Sbjct: 181 IETNPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRR 240

		

		Query: 240 EVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRAGDVLPLD---IADSITAKVD 296

		               +++ VL  ++ + ++++VA++  +  +   IL LR GD++ L    + D     + 

		Sbjct: 241 SSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIG 300

		

		Query: 297 GVPVMECGYGIFNGQYALRVQKMI 320

		                 C  G+   + A ++ + I

		Sbjct: 301 NRKKFLCQPGVVGKKIAAQILERI 324

		

		

		>SHAPEPROTEIN#Bacterial cell shape determinant MreB/Mbl protein

		           signature.

		          Length = 347

		

		 Score = 32.0 bits (73), Expect = 0.003

		 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

		

		Query: 144 AGQPGDAPFAPPTLVGDLGGGALYLAMGVLAGIVDAR-LRGKGQVVDAAIVDGSANLMNL 202

		           AG P        ++V D+GGG   +A+  L G+V +  +R  G   D AI++        

		Sbjct: 151 AGLPVSEATG--SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGS 208

		

		Query: 203 LLSIHAA 209

		           L+    A

		Sbjct: 209 LIGEATA 215

		

		

		>UREASE#Urea amidohydrolase (urease) protein signature.

		          Length = 570

		

		 Score = 30.1 bits (68), Expect = 0.003

		 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

		

		Query: 106 GGILVYDQFVTP----PTPQPVQQRRLRWGAHGRSNNGDNFYVV 145

		           GG +       P    PTPQPV  R + +GA+GRS    +   V

		Sbjct: 452 GGTIAAAPMGDPNASIPTPQPVHYRPM-FGAYGRSRTNSSVTFV 494

		

		

		>adhesinb#Adhesin B signature.

		          Length = 310

		

		 Score = 29.4 bits (66), Expect = 0.025

		 Identities = 9/36 (25%), Positives = 13/36 (36%)

		

		Query: 5  WKILGLAAAASISLAGCGGGDGGGSAQTGTLHVAMT 40

		           + L L   A + LA C          +  L+V  T

		Sbjct: 4  CRFLVLLLLAFVGLAACSSQKSSTETGSSKLNVVAT 39

		

		

		>FLGHOOKFLIK#Flagellar hook-length control protein signature.

		          Length = 375

		

		 Score = 70.6 bits (172), Expect = 2e-15

		 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 1/161 (0%)

		

		Query: 265 AASGAIAALQDAADSARATLAASSAPAALQQAA-PAALAANANAAAATAAPSLAPPVGTP 323

		           A       L      A++     S P+ +  AA P             AAP L+ P+G+ 

		Sbjct: 179 APGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPHQTQPLPTVAAPVLSAPLGSH 238

		

		Query: 324 DWTEALSQKVVFLSNAHQQSAELTLNPPDLGPLQVVLRVAENHAHALFVSQHAQVRDAVE 383

		           +W ++LSQ +   +   QQSAEL L+P DLG +Q+ L+V +N A    VS H  VR A+E

		Sbjct: 239 EWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLKVDDNQAQIQMVSPHQHVRAALE 298

		

		Query: 384 AALPKLREAMEAGGLGLGSASVSDGGFASAQQQQTPQRQSS 424

		           AALP LR  +   G+ LG +++S   F+  QQ  + Q+QS 

		Sbjct: 299 AALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQQQQSQ 339

		

		

		>FLGFLIJ#Flagellar FliJ protein signature.

		          Length = 147

		

		 Score = 62.1 bits (150), Expect = 3e-15

		 Identities = 43/140 (30%), Positives = 74/140 (52%)

		

		Query: 1   MAQSFPLQLLLDRAQDDLDTATKQLGHAQRERTDAQAQLDALVRYRDEYRERFAASAQSG 60

		           MA+   L  L D A+ +++ A + LG  +R    A+ QL  L+ Y++EYR    +   +G

		Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

		

		Query: 61  MPAGNWRNFQAFLDTLDAAIEQQRRVLAAAQTRIDAARPEWQAKKRTLGSYEILQARGAR 120

		           + +  W N+Q F+ TL+ AI Q R+ L     ++D A   W+ KK+ L +++ LQ R + 

		Sbjct: 61  ITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

		

		Query: 121 QDAQRAAKREQRDADEHAAK 140

		                  + +Q+  DE A +

		Sbjct: 121 AALLAENRLDQKKMDEFAQR 140

		

		

		>FLGFLIH#Flagellar assembly protein FliH signature.

		          Length = 228

		

		 Score =  107 bits (267), Expect = 6e-31

		 Identities = 65/184 (35%), Positives = 106/184 (57%), Gaps = 4/184 (2%)

		

		Query: 18  AAAALAAELQRVRDAAHAEGLAAGHVEGQALGYQAGYEQGRAKGFDEGQAEAHAHGAQLA 77

		           A  +L  +L +++  AH +G  AG  EG+  G++ GY++G A+G ++G AEA +  A + 

		Sbjct: 36  AEPSLEQQLAQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIH 95

		

		Query: 78  A----LAASFREALAGVERDLADDIATLALEIAQQVVRQHVQHDPAALIAAAREVLAAEP 133

		           A    L + F+  L  ++  +A  +  +ALE A+QV+ Q    D +ALI   +++L  EP

		Sbjct: 96  ARMQQLVSEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEP 155

		

		Query: 134 ALAGAPHLIVNPADLPVVEAYLKDELDTLGWSVRTDAGVERGGCRAHASTGEIDATLATR 193

		             +G P L V+P DL  V+  L   L   GW +R D  +  GGC+  A  G++DA++ATR

		Sbjct: 156 LFSGKPQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATR 215

		

		Query: 194 WERV 197

		           W+ +

		Sbjct: 216 WQEL 219

		

		

		>FLGMOTORFLIG#Flagellar motor switch protein FliG signature.

		          Length = 344

		

		 Score =  299 bits (767), Expect = e-102

		 Identities = 114/324 (35%), Positives = 190/324 (58%)

		

		Query: 5   GLTKSALLLMSIGEEEAAQVFKFLAPREVQKIGAAMASLKNVTREQVEDVLSEFVHEAEK 64

		           G  K+A+LL+SIG E +++VFK+L+  E++ +   +A L+ +T E  ++VL EF      

		Sbjct: 17  GKQKAAILLVSIGSEISSKVFKYLSQEEIESLTFEIAKLETITSELKDNVLLEFKELMMA 76

		

		Query: 65  HTALSLDSSEYIRSVLTKALGEDKAGVLIDRILQGSDTSGIEGLKWMDSAAVAELIKNEH 124

		              +     +Y R +L K+LG  KA  +I+ +     +   E ++  D A +   I+ EH

		Sbjct: 77  QEFIQKGGIDYARELLEKSLGTQKAVDIINNLGSALQSRPFEFVRRADPANILNFIQQEH 136

		

		Query: 125 PQIIATILVHLDRDQASEIASCFTERLRNDVLLRIATLDGIQPTALRELDDVLTGLLSGS 184

		           PQ IA IL +LD  +AS I S     ++ +V  RIA +D   P  +RE++ VL   L+  

		Sbjct: 137 PQTIALILSYLDPQKASFILSSLPTEVQTNVARRIALMDRTSPEVVREVERVLEKKLASL 196

		

		Query: 185 DNLKRAPMGGIRTAAEILNFMTSVHEEAVLENVKQYDPDLAQKIIDQMFVFENLLDLEDR 244

		            +      GG+    EI+N      E+ ++E++++ DP+LA++I  +MFVFE+++ L+DR

		Sbjct: 197 SSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEIKKKMFVFEDIVLLDDR 256

		

		Query: 245 AIQLLLKEVESEALIVALKGAPPALRQKFLSNMSQRAAELLAEDLDARGPVRVSEVETQQ 304

		           +IQ +L+E++ + L  ALK     +++K   NMS+RAA +L ED++  GP R  +VE  Q

		Sbjct: 257 SIQRVLREIDGQELAKALKSVDIPVQEKIFKNMSKRAASMLKEDMEFLGPTRRKDVEESQ 316

		

		Query: 305 RKILQVVRNLAESGQIVIGGKAED 328

		           +KI+ ++R L E G+IVI    E+

		Sbjct: 317 QKIVSLIRKLEEQGEIVISRGGEE 340

		

		

		>FLGMRINGFLIF#Flagellar M-ring protein signature.

		          Length = 559

		

		 Score =  469 bits (1208), Expect = e-161

		 Identities = 253/559 (45%), Positives = 364/559 (65%), Gaps = 32/559 (5%)

		

		Query: 133 LARMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVP 192

		           L R++ NPR+P ++  + A+A +VA+VLW++ PDYR L+SNLSD+DGGAI+A L Q N+P

		Sbjct: 16  LNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIP 75

		

		Query: 193 YKFADAGGAILVPANQVHETRLKLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRAL 252

		           Y+FA+  GAI VPA++VHE RL+LA  GLPKGG+VGFEL+D +KFGISQF+EQVNYQRAL

		Sbjct: 76  YRFANGSGAIEVPADKVHELRLRLAQQGLPKGGAVGFELLDQEKFGISQFSEQVNYQRAL 135

		

		Query: 253 EGELQRTVESVNAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLAITR 312

		           EGEL RT+E++  V++ARVHLA+PKPS+FVR++++PSASV V L PGR LDEGQ+ A+  

		Sbjct: 136 EGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVH 195

		

		Query: 313 LVSSSVPDMPAKNVTIVDQDGNLLTQT-ASATGLDASQLKYVQQIERNTQKRIDAILAPI 371

		           LVSS+V  +P  NVT+VDQ G+LLTQ+  S   L+ +QLK+   +E   Q+RI+AIL+PI

		Sbjct: 196 LVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPI 255

		

		Query: 372 FGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELAQSGTSGVPGAL 431

		            G GN  +QV+A +DF+  EQT E Y+PNG   ++ +RS+Q + S ++      GVPGAL

		Sbjct: 256 VGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGAL 315

		

		Query: 432 SNTPPQPASAPIVA-------------SNGQPAAPAATPVSDRKDSTTNYELDKTVRHVE 478

		           SN P  P  API               ++    + +A P S +++ T+NYE+D+T+RH +

		Sbjct: 316 SNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTK 375

		

		Query: 479 QSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNV 538

		            ++G I+RLSVAVVVNY+   D K      PLTAD++ Q++ L ++AMG+ +KRGD++NV

		Sbjct: 376 MNVGDIERLSVAVVVNYKTLADGKP----LPLTADQMKQIEDLTREAMGFSDKRGDTLNV 431

		

		Query: 539 VNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPAL-RRAFPPP 597

		           VNS FSA  +    LP+W+Q   I+      +WL V   A  L+   VRP L RR     

		Sbjct: 432 VNSPFSAVDNTGGELPFWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAK 491

		

		Query: 598 AEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAFESEKNRYERNLDYARTI 657

		           A    A    +  +            +    E+ ++        +++   E      R +

		Sbjct: 492 AAQEQAQVRQETEEA--------VEVRLSKDEQLQQRR-----ANQRLGAEVMSQRIREM 538

		

		Query: 658 ARQDPKIVATVVKNWVSDE 676

		           +  DP++VA V++ W+S++

		Sbjct: 539 SDNDPRVVALVIRQWMSND 557

		

		

		>FLGHOOKFLIE#Flagellar hook-basal body complex protein FliE

		           signature.

		          Length = 103

		

		 Score = 59.3 bits (143), Expect = 6e-15

		 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 9/112 (8%)

		

		Query: 3   APVNGIASALQQMQAMAAQAAGGAASPAASLAGSGAATAGSFASAMKASLEKISGDQQKA 62

		           + + GI   + Q+QA A  A    + P  ++         SFA  + A+L++IS  Q  A

		Sbjct: 1   SAIQGIEGVISQLQATAMSARAQESLPQPTI---------SFAGQLHAALDRISDTQTAA 51

		

		Query: 63  LGEAHAFEIGAQNVSLNDVMVDMQKANIGFQFGLQVRNKLVSAYNEIMQMSV 114

		             +A  F +G   V+LNDVM DMQKA++  Q G+QVRNKLV+AY E+M M V

		Sbjct: 52  RTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSMQV 103

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 31.3 bits (71), Expect = 0.004

		 Identities = 54/298 (18%), Positives = 91/298 (30%), Gaps = 76/298 (25%)

		

		Query: 10  GGTGFIGSRLVNALVDAGAHVRIG----------ARRRDHARHLATLPVDIVELTAFDVR 59

		           G  GFIG  +   L++AG  V +G          + ++     LA       ++   D  

		Sbjct: 7   GAAGFIGFHVSKRLLEAGHQV-VGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADRE 65

		

		Query: 60  ELARFVAGAHAAVNLVGVLHGGRGKRY----GEGFERLHVALPAALAAACIEARVPRMLH 115

		            +    A  H     V +       RY       +   ++     +   C   ++  +L+

		Sbjct: 66  GMTDLFASGH--FERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLY 123

		

		Query: 116 VSA---LGADPNAP-----------SMYLRSKGDGEAALHAQAAAGVLDVTVFRPSIVFG 161

		            S+    G +   P           S+Y  +K   E   H  +    L  T  R   V+G

		Sbjct: 124 ASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFFTVYG 183

		

		Query: 162 PG---DAFLNTFARLQRIFPVLPLAMPDALMQPI-------------YVGDVAQAI---- 201

		           P    D  L  F +          AM +   + I             Y+ D+A+AI    

		Sbjct: 184 PWGRPDMALFKFTK----------AMLEG--KSIDVYNYGKMKRDFTYIDDIAEAIIRLQ 231

		

		Query: 202 -------------ANACARDATRGRTYELGGPRTYRLEEIVRYAGRLVGRPARIVRLP 246

		                            A      R Y +G      L + ++     +G  A+   LP

		Sbjct: 232 DVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLP 289

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 29.3 bits (65), Expect = 0.016

		 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 11/64 (17%)

		

		Query: 115 SVSAEMHAGFPALRSEMPLNVRESHPGRGATPAALADVARIDELWRTCLAASGGPFLFGE 174

		           +V+A +  GFPAL +     +  S    GA  AA+AD+          +AA  GPF FG 

		Sbjct: 83  AVAAPVAFGFPALSTPGAGGLAVSISA-GALSAAIADI----------MAALKGPFKFGL 131

		

		Query: 175 FSIA 178

		           + +A

		Sbjct: 132 WGVA 135

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 33.9 bits (77), Expect = 0.002

		 Identities = 29/222 (13%), Positives = 58/222 (26%), Gaps = 17/222 (7%)

		

		Query: 123  VIEPRPAESNSRMAAAAPNGWSRPATSAMPRTGPNGNANPAASTAGSYFPASPASARAGW 182

		             ++     + + + A  P+  S     A     P     PA        PA+P S     

		Sbjct: 991  TVDTTNITTPNNIQADVPSVPSNNEEIARVDEAPV--PPPA--------PATP-SETTET 1039

		

		Query: 183  NAPAGATASVAANPNNPMTPVATGVNPEFRAGAASHAPARAPAWVPARVPADARRVAMVV 242

		             A      S     N       T  N E    A S+  A       A+  ++ +      

		Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099

		

		Query: 243  AQDAPPPAGQPANTRAAAQSWQAARMQGATTA-QGGVIPVSFRSQPAPRMLPPRPEPIRA 301

		             ++      +        ++ +  ++    +  Q     V  +++PA        +P   

		Sbjct: 1100 TKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARE-----NDPTVN 1154

		

		Query: 302  AAATASASGAPPAAATAAATGAAAAPPPPAGQQDGESIRRAA 343

		                 S +         A   ++    P        +     

		Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVV 1196

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 26.8 bits (59), Expect = 0.030

		 Identities = 10/38 (26%), Positives = 17/38 (44%)

		

		Query: 102 NVDPVQEMVNMISASRSYQANVETLNTAKQLMLKTLTI 139

		            V+  +E  N+    + Y AN + L TA  +    + I

		Sbjct: 508 GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINI 545

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 81.4 bits (201), Expect = 1e-19

		 Identities = 29/128 (22%), Positives = 52/128 (40%)

		

		Query: 49  SRVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGL 108

		           + +L  +DD      +   L   G+ V   +N         + D D++  D ++P  +  

		Sbjct: 4   ATILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAF 63

		

		Query: 109 TILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQ 168

		            +L  ++      PVL++SA       ++    G  DYL KPFD  E+   +   L   +

		Sbjct: 64  DLLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPK 123

		

		Query: 169 ASPAPFET 176

		             P+  E 

		Sbjct: 124 RRPSKLED 131

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 32.0 bits (72), Expect = 0.003

		 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

		

		Query: 242 GGGVGARVGGPFIGGRGGGWGGGSDGFRGGGGGFGGGGAS 281

		           GGG G+   G   GG  G   GG +G  GGG G GG  ++

		Sbjct: 47  GGGSGS---GIHWGGGSGHGNGGGNGNSGGGSGTGGNLSA 83

		

		

		

		 Score = 31.6 bits (71), Expect = 0.003

		 Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

		

		Query: 239 TLLGGGVGARVGG-------PFIGGRGGG--WGGGSDGFRGGGGGFGGGGASG 282

		           T LG G GA  G        P+ GG G G  WGGGS    GGG G  GGG+  

		Sbjct: 25  TGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGT 77

		

		

		>SSBTLNINHBTR#Streptomyces subtilisin inhibitor signature.

		          Length = 144

		

		 Score = 29.0 bits (64), Expect = 0.020

		 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

		

		Query: 36 VLHPLAGRPLLSHVIDTARALAPSRLVVVIGHGAERVRAAVAAP 79

		          V  PLAG  L S     A   APS LV+ +GHG     AA AAP

		Sbjct: 18 VCGPLAGASLASPATAPASLYAPSALVLTVGHGES---AATAAP 58

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 28.4 bits (63), Expect = 0.037

		 Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 8/136 (5%)

		

		Query: 2   GTTIRDVAQAANVSIGTVSRALKNQPGLSEATRARIVE-----IAHRMNYDPTQLRPRIK 56

		            T++ ++A+AA V+ G +    K++  L                       P      ++

		Sbjct: 31  STSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLR 90

		

		Query: 57  -RLTFLLHRQHNNFATTPFFSHVLHGVEDACRERGIVPSLLTTGPTDDVIRQMRPHAPDA 115

		             L  +L               + H  E    E  +V          +   ++       

		Sbjct: 91  EILIHVLESTVTEERRRLLMEIIFHKCEFV-GEMAVVQQAQRNLCL-ESYDRIEQTLKHC 148

		

		Query: 116 IAVAGFMEPETLEALA 131

		           I              A

		Sbjct: 149 IEAKMLPADLMTRRAA 164

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 72.9 bits (179), Expect = 1e-16

		 Identities = 80/358 (22%), Positives = 128/358 (35%), Gaps = 48/358 (13%)

		

		Query: 18  VAALAAGAPSVRAQSSVQLYGQVDEWIGAQKFPGGQRAWGVQGGGMST-----SYWGLRG 72

		           + AL   A  V A + V LYG +   +   +      A        +      S  G +G

		Sbjct: 5   LIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSKIGFKG 64

		

		Query: 73  TEDLGGGYQAIFTLEDFFRAQNGHYGRFDGDTFFGRNAYVGLATPYGTVRAGRLTTQLFV 132

		            EDLG G +AI+ +E     Q       D      R +++GL   +G +R GRL + L  

		Sbjct: 65  QEDLGNGLKAIWQVE-----QKASIAGTDSGWG-NRQSFIGLKGGFGKLRVGRLNSVLK- 117

		

		Query: 133 STILFNPFVDSYVFSPMVYHVFLGLGTFPTYTTDQGVVGDSGWNNAIDYTSPSFGGFNAA 192

		            T   NP+     +          LG       +  ++        + Y SP F G + +

		Sbjct: 118 DTGDINPWDSKSDY----------LGVNKIAEPEARLIS-------VRYDSPEFAGLSGS 160

		

		Query: 193 AMYAFGNTAGDNRSKKWSGQLNYSNGPFAATAVYQYVNFNGGPGDLGALVSGMKSQGVAQ 252

		             YA  + AG + S+ +    NY NG F       Y         +   V+  K Q + +

		Sbjct: 161 VQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRH----HQVQENVNIEKYQ-IHR 215

		

		Query: 253 VGLSYDFKLAKIYA-QYMYTNNERNAGNWHVNTVQGGVAVPL----GPGSALASYAYS-- 305

		           +   YD     +YA   +   + +     + +  Q  VA  L    G  +   SYA+   

		Sbjct: 216 LVSGYD--NDALYASVAVQQQDAKLVEENYSHNSQTEVAATLAYRFGNVTPRVSYAHGFK 273

		

		Query: 306 --RDSGGLDQTRRTWALGYDYPLSKRTDLYAAYM---NDRYSGMSSGDTFGAGIRAKF 358

		              D+   +       +G +Y  SKRT    +       +          G G+R KF

		Sbjct: 274 GSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF 331

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 27.9 bits (62), Expect = 0.020

		 Identities = 9/48 (18%), Positives = 18/48 (37%)

		

		Query: 8   PPAAASALDAIDRELLRALADDARQPVSELARRVGLSAPSTADRLRRL 55

		                  L  ++  L+ A     R    + A  +GL+  +   ++R L

		Sbjct: 426 SGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIREL 473

		

		

		>TONBPROTEIN#Gram-negative bacterial tonB protein signature.

		          Length = 239

		

		 Score = 33.8 bits (77), Expect = 8e-04

		 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

		

		Query: 44  EPFEPVEPDNVPVQVELLKPQPIARAPAPVKPAAGRPQAAQKRAAPAHAPMPRARAPRAS 103

		           EP + V+P   PV     +P+PI   P        +P+   K       P P  +     

		Sbjct: 56  EPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK-----PKPVKKVQEQP 110

		

		Query: 104 QPVLSAAESPIESPAAASAAEPASAATAGATSEATGGAAAGAAGAGAAAPP 154

		           +  +   ES   SP   +A    +++TA A +     + A    A +   P

		Sbjct: 111 KRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQP 161

		

		

		>PF03309#Bvg accessory factor

		          Length = 271

		

		 Score =  199 bits (509), Expect = 8e-66

		 Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 47/278 (16%)

		

		Query: 5   CLLIDAGNSRIKWALADTGRHFVTSGAFEHADDTPDWSTLPAPR------GAWISNVAGD 58

		            L ID  N+     L          G+ +HA     W     P          I  + GD

		Sbjct: 2   LLAIDVRNTHTVVGLIS--------GSGDHAKVVQQWRIRTEPEVTADELALTIDGLIGD 53

		

		Query: 59  AAAA---------------RIDALIDAHWPALPRTVVRACAAQCGVTNGYAEPARLGSDR 103

		            A                  +  +++ +WP +P  ++     + G+      P  +G+DR

		Sbjct: 54  DAERLTGASGLSTVPSVLHEVRVMLEQYWPNVPHVLIEP-GVRTGIPLLVDNPKEVGADR 112

		

		Query: 104 WAGLIGAHAAFPGEHLLIATFGTATTLEALRADGRFTGGLIAPGWALMMRSLGMHTAQLP 163

		               + A+  +    +++  FG++  ++ + A G F GG IAPG  +   +    +A L 

		Sbjct: 113 IVNCLAAYHKYGTAAIVV-DFGSSICVDVVSAKGEFLGGAIAPGVQVSSDAAAARSAALR 171

		

		Query: 164 TVSIDAATSLLDELAANDAHAPFAIDTPHALSAGCLQAQAGLIE----RAWRDLEKAWKA 219

		            V +    S++ +            +T   + AG +   AGL++    R   D++    A

		Sbjct: 172 RVELTRPRSVIGK------------NTVECMQAGAVFGFAGLVDGLVNRIRDDVDGFSGA 219

		

		Query: 220 PVRLVLSGGAADAIVRALTVPHTRHDTLVLTGLALIAH 257

		            V +V +G  A  ++  L         L L GL L+  

		Sbjct: 220 DVAVVATGHTAPLVLPDLRTVEHYDRHLTLDGLRLVFE 257

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 30.6 bits (69), Expect = 0.008

		 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

		

		Query: 199 AAAEVDALRARDATLAGGLP----PVALAAVRAGATLTDTLAAALNALAA 244

		           A+  V  +R  D  L GG+      +A      G TLT TL A LNAL  

		Sbjct: 74  ASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTG 123

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 31.0 bits (70), Expect = 0.006

		 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

		

		Query: 7   TLLVDILDA--GNLSKAAQRLKMSRANVSYRLNQLEKSIGLQLVRRT 51

		            L++  L A  GN  KAA  L ++R  +  ++ +L    G+ + R +

		Sbjct: 439 PLILAALTATRGNQIKAADLLGLNRNTLRKKIREL----GVSVYRSS 481

		

		

		>PHPHTRNFRASE#Phosphoenolpyruvate-protein phosphotransferase

		           signature.

		          Length = 572

		

		 Score =  515 bits (1329), Expect = e-176

		 Identities = 197/567 (34%), Positives = 310/567 (54%), Gaps = 7/567 (1%)

		

		Query: 302 PNTLAGVCAAPGIAVGALVRWDETDIAPPELASGTPAAESRLLDRALAAVDAELETTVRE 361

		            + + G+ A+ G+A+       E ++   + +    + E   L  AL     EL     +

		Sbjct: 2   HHKITGIAASSGVAIAKAFIHLEPNVDIEKTSITDVSTEIEKLTAALEKSKEELRAIKDQ 61

		

		Query: 362 ASQRGAIGEAGIFAVHRVLLEDPSLVDAARDLI-SLGKSAGYAWRETIRAQTAVLAGVDD 420

		                   +A IFA H ++L+DP LVD  +  I +   +A YA +E      ++   +D+

		Sbjct: 62  TEASMGADKAEIFAAHLLVLDDPELVDGIKGKIENEQMNAEYALKEVSDMFVSMFESMDN 121

		

		Query: 421 ALLAERAADLRDIDKRVLRAL-GYASATARELPAEAVLAAEEFTPSDLASLDRERVTALV 479

		             + ERAAD+RD+ KRVL  L G  + +   +  E V+ AE+ TPSD A L+++ V    

		Sbjct: 122 EYMKERAADIRDVSKRVLGHLIGVETGSLATIAEETVIIAEDLTPSDTAQLNKQFVKGFA 181

		

		Query: 480 MARGGATSHAAIIARQLGIPSLVAVGDALYAIPQRTQVVVDASAGRLEYAPTALDVERAR 539

		              GG TSH+AI++R L IP++V   +    I     V+VD   G +   PT  +V+   

		Sbjct: 182 TDIGGRTSHSAIMSRSLEIPAVVGTKEVTEKIQHGDMVIVDGIEGIVIVNPTEEEVKAYE 241

		

		Query: 540 HERQRLAGVREANRRMSGEAAVTRDGHKIEVAANIATLDDARVAVDNGADAVGLLRTELM 599

		            +R      ++   ++ GE + T+DG  +E+AANI T  D    + NG + +GL RTE +

		Sbjct: 242 EKRAAFEKQKQEWAKLVGEPSTTKDGAHVELAANIGTPKDVDGVLANGGEGIGLYRTEFL 301

		

		Query: 600 FIHRQAAPTTSEHQQSYQSIVDALQGRTAIIRTLDVGADKEVDYLTLPPEPNPALGLRGI 659

		           ++ R   PT  E  ++Y+ +V  + G+  +IRTLD+G DKE+ YL LP E NP LG R I

		Sbjct: 302 YMDRDQLPTEEEQFEAYKEVVQRMDGKPVVIRTLDIGGDKELSYLQLPKELNPFLGFRAI 361

		

		Query: 660 RLAQVRPDLLDDQLQGLLSVKPYGSVRILLPMVTDVGELVRIRERIDAFARALGR----- 714

		           RL   + D+   QL+ LL    YG+++++ PM+  + EL + +  +      L       

		Sbjct: 362 RLCLEKQDIFRTQLRALLRASTYGNLKVMFPMIATLEELRQAKAIMQEEKDKLLSEGVDV 421

		

		Query: 715 ADPIEVGVMIEVPSAALLADQLAKHADFLSIGTNDLTQYTLAMDRCQADLAAQADGLHPA 774

		           +D IEVG+M+E+PS A+ A+  AK  DF SIGTNDL QYT+A DR    ++      HPA

		Sbjct: 422 SDSIEVGIMVEIPSTAVAANLFAKEVDFFSIGTNDLIQYTMAADRMNERVSYLYQPYHPA 481

		

		Query: 775 VLRLVDATVRGAEKHGKWVGVCGALGGDPVAVPVLVGLGVTELSVDPVSVPGIKAQVRRL 834

		           +LRLVD  ++ A   GKWVG+CG + GD VA+P+L+GLG+ E S+   S+   ++Q+ +L

		Sbjct: 482 ILRLVDMVIKAAHSEGKWVGMCGEMAGDEVAIPLLLGLGLDEFSMSATSILPARSQLLKL 541

		

		Query: 835 DYQLCRQRAQDLLALESAQAVRAASRE 861

		             +  +  AQ  L L++A+ V    ++

		Sbjct: 542 SKEELKPFAQKALMLDTAEEVEQLVKK 568

		

		

		>TYPE3IMSPROT#Type III secretion system inner membrane S protein

		           family signature.

		          Length = 354

		

		 Score = 32.8 bits (75), Expect = 3e-04

		 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

		

		Query: 51  KRETKQQFIDAIAAGRRRYRQIEIQSQDVL-PVGDATYVVAG 91

		           KRE K+         +RR    EIQS+++   V  ++ VVA 

		Sbjct: 222 KREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAN 263

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 95.3 bits (237), Expect = 2e-23

		 Identities = 76/368 (20%), Positives = 144/368 (39%), Gaps = 31/368 (8%)

		

		Query: 100 RATTSLAAIFALRMLGLFMIMPVFSVYAKT-IPGGDNVVLVGIALGAYGVTQSLLYIFYG 158

		           R    + +  AL  +G+ +IMPV     +  +   D     GI L  Y + Q       G

		Sbjct: 5   RPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLG 64

		

		Query: 159 WASDKFGRKPVIAAGLLIFALGSFVAAFAHDITWIIVGRVIQGM-GAVSSAVLAFIADLT 217

		             SD+FGR+PV+   L   A+   + A A  +  + +GR++ G+ GA  +   A+IAD+T

		Sbjct: 65  ALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADIT 124

		

		Query: 218 SEHNRTKAMAMVGGSIGVSFAVAIVGAPI--VFHWVGMSGLFAIVGALSVVAIGVVLWVV 275

		               R +    +    G      + G  +  +         F    AL+ +      +++

		Sbjct: 125 DGDERARHFGFMSACFGFGM---VAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLL 181

		

		Query: 276 PDAPRPVHVPAPFAEVLHNVELLRLNFGVLVLHATQTALFLVVPRLLVDGGLPVA----- 330

		           P++ +    P    E L+ +   R   G+ V+ A     F+    + + G +P A     

		Sbjct: 182 PESHKGERRPLR-REALNPLASFRWARGMTVVAALMAVFFI----MQLVGQVPAALWVIF 236

		

		Query: 331 ----SHWQ-----VYLPVMGL--AFVMMVPAIIVAEKQGKMKPVLLGGIAAILIGQLLLG 379

		                HW      + L   G+  +    +    VA + G+ + ++L G+ A   G +LL 

		Sbjct: 237 GEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALML-GMIADGTGYILLA 295

		

		Query: 380 MATHTILIVAAILFIYFLGFNILEASQPSLVSKLAPGSRKGAATGVYNTTQSIGLALGGV 439

		            AT   +     + +      I   +  +++S+     R+G   G      S+   +G +

		Sbjct: 296 FATRGWMAF--PIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPL 353

		

		Query: 440 VGGVLLKH 447

		           +   +   

		Sbjct: 354 LFTAIYAA 361

		

		

		>cloacin#Cloacin signature.

		          Length = 551

		

		 Score = 41.6 bits (97), Expect = 7e-07

		 Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

		

		Query: 109 GGRGGSGGGGGGDDG-GYGGGGG-YGGGRDMERGGGGGGRASGGGGAGARSGGGGGGGGA 166

		           GG  G G GGG  DG G+      +GGG       GGG     GGG G   GG G GG  

		Sbjct: 22  GGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNL 81

		

		Query: 167 SRPSAPAGGGF 177

		           S  +AP   GF

		Sbjct: 82  SAVAAPVAFGF 92

		

		

		

		 Score = 32.0 bits (72), Expect = 0.001

		 Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 16/79 (20%)

		

		Query: 114 SGGGGGGD-----------DGGYGGGGGYGGGRD-----MERGGGGGGRASGGGGAGARS 157

		           SGG G G            +GG  G G  GG  D      E    GGG  SG    G   

		Sbjct: 2   SGGDGRGHNTGAHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGGSG 61

		

		Query: 158 GGGGGGGGASRPSAPAGGG 176

		            G GGG G S   +  GG 

		Sbjct: 62  HGNGGGNGNSGGGSGTGGN 80

		

		

		

		 Score = 29.3 bits (65), Expect = 0.011

		 Identities = 22/59 (37%), Positives = 22/59 (37%)

		

		Query: 109 GGRGGSGGGGGGDDGGYGGGGGYGGGRDMERGGGGGGRASGGGGAGARSGGGGGGGGAS 167

		           GG G     GGG   G GGG G  GG     G      A    G  A S  G GG   S

		Sbjct: 48  GGSGSGIHWGGGSGHGNGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALSTPGAGGLAVS 106

		

		

		>SALSPVBPROT#Salmonella virulence plasmid 65kDa B protein signature.

		          Length = 591

		

		 Score = 61.3 bits (148), Expect = 3e-11

		 Identities = 56/208 (26%), Positives = 81/208 (38%), Gaps = 40/208 (19%)

		

		Query: 12  LNLPSGGGSVGGDGGDFSVDLNTGTATLKFDLTVPAGPNGITPPHTLQYSAGAGDGAFGL 71

		             LP GG ++   G D       G A++   L + A   G  P   L YS+G G+G FG+

		Sbjct: 18  PFLPKGGKALSQSGPD-------GLASITLPLPISAE-RGFAPALALHYSSGGGNGPFGV 69

		

		Query: 72  GWSLGLMTIRRR-----------------------ITPATGAAEPAPPGACTLVGVGELV 108

		           GWS   M+I R                         T +TG A P P        V    

		Sbjct: 70  GWSCATMSIARSTSHGVPQYNDSDEFLGPDGEVLVQTLSTGDA-PNPVTCFAYGDVSFPQ 128

		

		Query: 109 DMGARRFRPIVDATGLLIEFTGAS------WTATDKTDTQYTLGTSANAQIGDGGALP-- 160

		                R++P  +++   +E+   +      W   D     + LG +A A++ D  A    

		Sbjct: 129 SYTVTRYQPRTESSFYRLEYWVGNSNGDDFWLLHDSNGILHLLGKTAAARLSDPQAASHT 188

		

		Query: 161 AAWLVDRCADSAGNAIAYTWLAVGGARV 188

		           A WLV+     AG  I Y++LA  G  V

		Sbjct: 189 AQWLVEESVTPAGEHIYYSYLAENGDNV 216

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 39.8 bits (93), Expect = 6e-05

		 Identities = 27/230 (11%), Positives = 60/230 (26%), Gaps = 27/230 (11%)

		

		Query: 653 QANGQIDAAQQQLAVAQAQAHAYQAGVTVAQTRATNAAKNAQEYGALNSQVIVIQATGQQ 712

		            A       Q  L  A+ +   YQ      +       K   E             + ++

		Sbjct: 131 GAEADTLKTQSSLLQARLEQTRYQILSRSIELNKLPELKLPDEPYFQ-------NVSEEE 183

		

		Query: 713 VSGGDDGDYNGVSAMANQYLSG-----QRISGDSATVAAATNLAANRLSQQFQIDSMNRT 767

		           V           S   NQ         ++ +     +A           ++ ++D  +  

		Sbjct: 184 VLRLTSLIKEQFSTWQNQKYQKELNLDKKRAERLTVLARINRYENLSRVEKSRLDDFSSL 243

		

		Query: 768 TAE---MQQALAQAQAQLAAANAQVSAAGANLAVAQLNAQAAAQTLGVFDADTFTPQVWK 824

		             +    + A+ + + +   A  ++    + L   +    +A +   +            

		Sbjct: 244 LHKQAIAKHAVLEQENKYVEAVNELRVYKSQLEQIESEILSAKEEYQLVTQL-------- 295

		

		Query: 825 AMGNFIQQIYERYMNMALRAAKLMQQAYNFENDVSVSFIKASYQGVVNGL 874

		               F  +I ++          L  +    E     S I+A     V  L

		Sbjct: 296 ----FKNEILDKLRQTTDNIGLLTLELAKNEERQQASVIRAPVSVKVQQL 341

		

		

		>YERSSTKINASE#Yersinia serine/threonine protein kinase signature.

		          Length = 732

		

		 Score = 33.9 bits (77), Expect = 0.004

		 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

		

		Query: 149 QVLDGLAHAHANGVVHRDLKPQNVMVTTLDGEPCAKILDFGI 190

		           ++LD   H    GVVH D+KP NV+     GEP   ++D G+

		Sbjct: 253 RLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPV--VIDLGL 292

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 57.9 bits (140), Expect = 6e-11

		 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

		

		Query: 484 HALVVDDNENARETLGAMLTALGIRADLRGTGKEGLRCFGECQHDIVVLDLELPDISGFE 543

		             LV DD+   R  L   L+  G    +        R       D+VV D+ +PD + F+

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 544 VAEQIRWATSPDAAKKTTILGVSAYES------AMLKGDHAVFDAFVPKPIHLDTLNGIV 597

		           +  +I+      A     +L +SA  +      A  KG    +D ++PKP  L  L GI+

		Sbjct: 65  LLPRIK-----KARPDLPVLVMSAQNTFMTAIKASEKG---AYD-YLPKPFDLTELIGII 115

		

		Query: 598 SR 599

		            R

		Sbjct: 116 GR 117

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 32.3 bits (73), Expect = 0.005

		 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

		

		Query: 530 HQGLLSSLPSQPLGAPSPRTSHHHPAAIHRNARPPSPPQSSDPSRTRSPRSPEPESLAKP 589

		           HQ +    P+QP+       +   P        PP P    +P     P  P+   +   

		Sbjct: 38  HQVIELPAPAQPISVTMVAPADLEPP--QAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 95

		

		Query: 590 RSRSPFRALGLRCRPLRLRPSPAVRR-GRRGGLRRTSPIEDERPRAPPPIVARNGRAGDT 648

		           + +   +      +P  ++     +R  +    R  SP E+  P  P    A    +   

		Sbjct: 96  KPKPKPKP-----KPKPVKKVEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPV 150

		

		Query: 649 LA----PRQLTCNSPPRPSRPRRA 668

		            +    PR L+ N P  P+R +  

		Sbjct: 151 TSVASGPRALSRNQPQYPARAQAL 174

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 34.0 bits (78), Expect = 0.001

		 Identities = 16/42 (38%), Positives = 24/42 (57%)

		

		Query: 287 ILIALALLIGTPFFVFFGSLSDKIGRKPIILAGCLIAALTYF 328

		           IL+AL  L+        G+LSD+ GR+P++L     AA+ Y 

		Sbjct: 47  ILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAVDYA 88

		

		

		

		 Score = 33.6 bits (77), Expect = 0.002

		 Identities = 46/264 (17%), Positives = 93/264 (35%), Gaps = 28/264 (10%)

		

		Query: 77  AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLMQGLALG 136

		           A V G L D  GR+   L+++    +   ++   P          V++I  R++ G+  G

		Sbjct: 60  APVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAP-------FLWVLYIG-RIVAGIT-G 110

		

		Query: 137 GEYGGAATYVAEHAPAHRRGFYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGNWGWRV 196

		                A  Y+A+      R  +  ++      G+      + G    +G    G +    

		Sbjct: 111 ATGAVAGAYIADITDGDERARHFGFMSACFGFGM------VAG--PVLGGLM-GGFSPHA 161

		

		Query: 197 PFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLT 256

		           PF A+  L  ++      L         +   + +  PL             +  +  L 

		Sbjct: 162 PFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASF-----RWARGMTVVAALM 216

		

		Query: 257 AGQAVVWYTGQFYA---LFFLTQTLKVDGGSANILIALALLIGTPF-FVFFGSLSDKIGR 312

		           A   ++   GQ  A   + F       D  +  I +A   ++ +    +  G ++ ++G 

		Sbjct: 217 AVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGE 276

		

		Query: 313 KPIILAGCLIAALTYFPLFKALTH 336

		           +  ++ G +IA  T + L    T 

		Sbjct: 277 RRALMLG-MIADGTGYILLAFATR 299

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 43.7 bits (103), Expect = 1e-06

		 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 21/75 (28%)

		

		Query: 408 LIDNAIRY----TPTGGRITVRVRADHAAGVVHLEVEDTGPGIPANERERVVERFYRILG 463

		           L++N I++     P GG+I ++   D+  G V LEVE+TG     N +E           

		Sbjct: 263 LVENGIKHGIAQLPQGGKILLKGTKDN--GTVTLEVENTGSLALKNTKE----------- 309

		

		Query: 464 REGDGSGLGLAIVRE 478

		                +G GL  VRE

		Sbjct: 310 ----STGTGLQNVRE 320

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 95.7 bits (238), Expect = 2e-24

		 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

		

		Query: 46  RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGLD 105

		            IL+A+DD+ +   L ++L ++GY V    N       ++    DL++ D+ +P     D

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 106 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNE-LEARVRALTRR 162

		           +L R++    +LPVL+++A ++    +K  + GA DY+ KPF L E +    RAL   

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEP 122

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 44.5 bits (105), Expect = 3e-08

		 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

		

		Query: 33 RRMMRGRGFTLIELMIVLAIVGVVAAYAIPAYQDYLARSRVGEGLALAASARLAVAENA 91

		          R   + RGFTL+E+M+V+ I+GV+A+  +P            +     A + +   ENA

		Sbjct: 2  RATDKQRGFTLLEIMVVIVIIGVLASLVVPNLM-----GNKEKADKQKAVSDIVALENA 55

		

		

		>PF06580#Sensor histidine kinase

		          Length = 349

		

		 Score = 29.8 bits (67), Expect = 0.026

		 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

		

		Query: 205 AALSVLLSVGLALTVSRGPWLQVGVM----------VVAGFWMAFAQTR--RDPA--ARR 250

		           + + ++L+      + R  WL++ +           VV G     A T   R  A    +

		Sbjct: 49  SLMGLVLTHAYRSFIKRQGWLKLNMGQIILRVLPACVVIGMVWFVANTSIWRLLAFINTK 108

		

		Query: 251 ARAWVIPVVLGALFVAVNVAVRWANAHYHLGLAESAAERMRDAGQIA 297

		             A+ +P+ L  +F  V V   W+  ++     ++  +   D  ++A

		Sbjct: 109 PVAFTLPLALSIIFNVVVVTFMWSLLYFGWHFFKNYKQAEIDQWKMA 155

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 43.0 bits (101), Expect = 8e-08

		 Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 2/131 (1%)

		

		Query: 6   APVGDSRDGRCRRTTTNMKTYSTYLTLPLAASLLAGCAAFAPSDAAKLECTMPVAAYPEN 65

		            P  D +    R  +    T     T   A +  +       S    L    P   YP  

		Sbjct: 113 QPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQ--YPAR 170

		

		Query: 66  AKPLERRATVLVRAMITASGNAENVTVTTSSRNAAADRAAVDAMSRIVCSQTPARGGEPY 125

		           A+ L     V V+  +T  G  +NV + ++      +R   +AM R          G   

		Sbjct: 171 AQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVV 230

		

		Query: 126 PFTLTRPFVFE 136

		                     E

		Sbjct: 231 NILFKINGTTE 241

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 29.7 bits (66), Expect = 0.023

		 Identities = 14/35 (40%), Positives = 17/35 (48%)

		

		Query: 32  VVFVGPSGCGKSTLMRMIAGLEDISGGELLIDGAK 66

		           VV  G  G GKSTL+  + GL+  S     I   K

		Sbjct: 599 VVLEGTGGIGKSTLINTLVGLDFFSDTHFDIGTGK 633

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 72.0 bits (176), Expect = 5e-17

		 Identities = 53/199 (26%), Positives = 76/199 (38%), Gaps = 16/199 (8%)

		

		Query: 3   IRDNVFLITGGASGLGAGTARLLTEAGGKVVLADLNQDAGEALARELGGVFVRCDVAREE 62

		           I   +  ITG A G+G   AR L   G  +   D N +  E +   L       +    +

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 63  DAQAAVAA------ATKLGTLRGLVNCAGIAPAAKTVGKDGPHPLELFAKTITVNLIGTF 116

		              +A           ++G +  LVN AG+       G       E +  T +VN  G F

		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVL----RPGLIHSLSDEEWEATFSVNSTGVF 121

		

		Query: 117 NMIRVAAAAMAANEPAPTGERGVIVSTASVAAFDGQIGQAAYAASKAGVAGMTLPIARDL 176

		           N  R  +  M           G IV+  S  A   +   AAYA+SKA     T  +  +L

		Sbjct: 122 NASRSVSKYMMDRR------SGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLEL 175

		

		Query: 177 SRNAIRVMTIAPGIFETPM 195

		           +   IR   ++PG  ET M

		Sbjct: 176 AEYNIRCNIVSPGSTETDM 194

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 26.0 bits (57), Expect = 0.010

		 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

		

		Query: 33  KLAYPIRDGIPVMLVDEARQTVEGTPVDPAGPAQGR 68

		           KL Y + D +  +L+DEAR     TP+  +GPA+  

		Sbjct: 202 KLHYALVDEVDSILIDEAR-----TPLIISGPAEDS 232

		

		

		>FLGHOOKAP1#Flagellar hook-associated protein signature.

		          Length = 546

		

		 Score = 29.9 bits (67), Expect = 0.012

		 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

		

		Query: 149 TLMPAAQRLAARLLMIAEGYG---GISTRHRRIRLSQERLGAMLSLSRQTANQLLKELA 204

		           TL+  A+  AAR  +I +  G      T  + +R   +++   +  S    N   K++A

		Sbjct: 118 TLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIA 176

		

		

		>NUCEPIMERASE#Nucleotide sugar epimerase signature.

		          Length = 334

		

		 Score = 38.6 bits (90), Expect = 3e-05

		 Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 51/192 (26%)

		

		Query: 32  RVLIVG-CGDVGMRCAAQLRARHENLRVIALTS---------RRSRCAELRAAGVVPVVG 81

		           + L+ G  G +G   + +L       +V+ + +         +++R   L   G      

		Sbjct: 2   KYLVTGAAGFIGFHVSKRLLEAGH--QVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKI 59

		

		Query: 82  DLDARATLERIARVAHV--VLHLAPPQATGHVDRRTQALVAALASPRRPRQLAPAYGRLR 139

		           DL  R  +  +    H   V                   +A   S   P     AY    

		Sbjct: 60  DLADREGMTDLFASGHFERVFISP-------------HRLAVRYSLENPH----AYADSN 102

		

		Query: 140 -AGW----AAARSARPRFQASAIVPDAPSRPVVVYASTSGVYGDCGGARVDETRPV-RPA 193

		             G+       R  + +               ++YAS+S VYG            V  P 

		Sbjct: 103 LTGFLNILEGCRHNKIQH--------------LLYASSSSVYGLNRKMPFSTDDSVDHPV 148

		

		Query: 194 NPRAQRRVSAER 205

		           +  A  + + E 

		Sbjct: 149 SLYAATKKANEL 160

		

		

		>PF05616#Neisseria meningitidis TspB protein

		          Length = 501

		

		 Score = 27.4 bits (60), Expect = 0.036

		 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 15/61 (24%)

		

		Query: 77  WLADVRK--------GNDPSAAKLAARMS--PTVKELCTQFMEEYSRP-----RNKPSTV 121

		           W  D R+        G D S  +L +  S  P VKEL    ME  +RP     RN+P   

		Sbjct: 131 WYEDERRINRTYGCYGVDSSIMRLMSDYSRFPEVKELMESQMERLARPYWEKLRNRPDMY 190

		

		Query: 122 D 122

		            

		Sbjct: 191 Y 191

		

		

		>FERRIBNDNGPP#Ferrichrome-binding periplasmic protein signature.

		          Length = 296

		

		 Score = 43.4 bits (102), Expect = 6e-07

		 Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 15/174 (8%)

		

		Query: 50  ACALAPAVAHAELAVTDDAGHTITLAAPARRVVSLAPHVTELIYAAG----GGAKLVGAV 105

		           A AL+P +     A                R+V+L     EL+ A G    G A  +   

		Sbjct: 15  AMALSPLLWQMNTAHAAAID--------PNRIVALEWLPVELLLALGIVPYGVADTINYR 66

		

		Query: 106 SYSDYPPAAKAIPRVGSNQALDLERIAALKPDLIVVWRHGNAGRETERLRALGIPLYFSE 165

		            +   PP   ++  VG     +LE +  +KP  +V         E     A G    FS+

		Sbjct: 67  LWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSD 126

		

		Query: 166 PRH-LDDVAASLDKLGTLLGTREIAAAAANAYRQQIARLRARYAGK--PPVTVF 216

		            +  L     SL ++  LL  +  A      Y   I  ++ R+  +   P+ + 

		Sbjct: 127 GKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLT 180

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score =  114 bits (286), Expect = 9e-30

		 Identities = 73/398 (18%), Positives = 153/398 (38%), Gaps = 16/398 (4%)

		

		Query: 25  LAVLDGAIANVALPTIARDLRASDAASIWIVNAYQLAVTISLLPLASLGDRIGYRRVYIA 84

		            +VL+  + NV+LP IA D     A++ W+  A+ L  +I       L D++G +R+ + 

		Sbjct: 25  FSVLNEMVLNVSLPDIANDFNKPPASTNWVNTAFMLTFSIGTAVYGKLSDQLGIKRLLLF 84

		

		Query: 85  GLALFTAASLGCALS-STLPALATLRVIQGFGAAGIMSVNTALVRMIYPSSQLGRGVAIN 143

		           G+ +    S+   +  S    L   R IQG GAA   ++   +V    P    G+   + 

		Sbjct: 85  GIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAAAFPALVMVVVARYIPKENRGKAFGLI 144

		

		Query: 144 AMVVALSSAVGPTIASAVLAVAPWPWLFAINVPIGVAAVYGSLRALPVNPGR-DAPYDFV 202

		             +VA+   VGP I   +     W +L    +P+        L  L     R    +D  

		Sbjct: 145 GSIVAMGEGVGPAIGGMIAHYIHWSYLL--LIPMITIITVPFLMKLLKKEVRIKGHFDIK 202

		

		Query: 203 SAMMNACVFGLLIVSVDGLGHGEDRVSVALTALAAVVIGYF-FVRRQLTQPAPLLPVDLL 261

		             ++ +      ++            S +++ L   V+ +  FV+       P +   L 

		Sbjct: 203 GIILMSVGIVFFMLFTT---------SYSISFLIVSVLSFLIFVKHIRKVTDPFVDPGLG 253

		

		Query: 262 RIPIFALSISTSVASFTSQMLAFVALPFWLQNTLGFSQVQTG-LYMTPWPLVIVVAAPLA 320

		           +   F + +      F +       +P+ +++    S  + G + + P  + +++   + 

		Sbjct: 254 KNIPFMIGVLCGGIIFGTVAGFVSMVPYMMKDVHQLSTAEIGSVIIFPGTMSVIIFGYIG 313

		

		Query: 321 GVLSDRYSAGALGGVGLALFASGLLALATIGAHPTPVDIVWRMALCGAGFGLFQSPNNRA 380

		           G+L DR     +  +G+   +   L  + +    T   +   +     G    ++  +  

		Sbjct: 314 GILVDRRGPLYVLNIGVTFLSVSFLTASFL-LETTSWFMTIIIVFVLGGLSFTKTVISTI 372

		

		Query: 381 ILSAAPRERAGGASGMLGTARLTGQTFGAALVALIFGV 418

		           + S+  ++ AG    +L       +  G A+V  +  +

		Sbjct: 373 VSSSLKQQEAGAGMSLLNFTSFLSEGTGIAIVGGLLSI 410

		

		

		>PYOCINKILLER#Pyocin S killer protein signature.

		          Length = 617

		

		 Score = 31.7 bits (71), Expect = 0.007

		 Identities = 43/225 (19%), Positives = 78/225 (34%), Gaps = 12/225 (5%)

		

		Query: 106 LAQARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYA 165

		           L Q +   L A+  L    +  E   +  R   I    ++        E     +     

		Sbjct: 136 LNQKKITSLGAKNFLTRTAE--EIGEQAVREGNINGPEAYMRFLDREMEGLTAAYNVKLF 193

		

		Query: 166 NKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIM 225

		            + I+SL++       +K   +  A +      A EA+   E   R     RA   Y + 

		Sbjct: 194 TEAISSLQIRMNTLTAAKASIEAAAANKAREQAAAEAKRKAEEQARQQAAIRAANTYAMP 253

		

		Query: 226 TGRCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMAL 285

		                   AA      +++  QG   +A+     I  L R +A+        +A+ F +L

		Sbjct: 254 ANGSVVATAA---GRGLIQVAQGAASLAQAISDAIAVLGRVLASAPS----VMAVGFASL 306

		

		Query: 286 TFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQAL 330

		           T++  T     +W +    +  + +  D  K+  P  V L+  A 

		Sbjct: 307 TYSSRT---AEQWQDQTPDSVRYALGMDAAKLGLPPSVNLNAVAK 348

		

		

		>RTXTOXINA#Gram-negative bacterial RTX toxin determinant A family

		           signature.

		          Length = 1024

		

		 Score = 35.7 bits (82), Expect = 4e-05

		 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

		

		Query: 95  APNGLAANAGIAAVTQVLTGNI----ASNGLAHGPTAGVASASGIGGMIAGSVTNAVAPL 150

		           A     A AG+   T+VL GN+    +   +A     G+++++   G+IA +VT A++PL

		Sbjct: 263 ADTRTKAAAGVELTTKVL-GNVGKGISQYIIAQRAAQGLSTSAAAAGLIASAVTLAISPL 321

		

		Query: 151 T 151

		           +

		Sbjct: 322 S 322

		

		

		>PF00577#Outer membrane usher protein FimD

		          Length = 878

		

		 Score = 30.2 bits (68), Expect = 0.023

		 Identities = 36/244 (14%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

		

		Query: 92  FRSVSDHGSASYMAGRSSAFDASYKTAKSSSSTSDSSSWSRSGSQSASSS--AANGSLSV 149

		           + + +D   +          D   +     +   + +   R   Q   +       +L +

		Sbjct: 486 YFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYL 545

		

		Query: 150 TTSK----------------IGLASNGGTASVSGGANLSASEKESFSVAKSFVPVPHGF- 192

		           + S                 +  A      ++S     +A +K    +    V +P    

		Sbjct: 546 SGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHW 605

		

		Query: 193 --SANGSENESVTASISGSAHLNWGKQTYSGQYGAYDATKKSSTDSTSSASDSSWSASHS 250

		             S + S+    +AS S S  LN      +G YG        S    +  +      S S

		Sbjct: 606 LRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGS 665

		

		Query: 251 DTSASSSSSGAMNKTASASFSKQSKWNYNDTRSSVDVTKTGSVTQYVDTRQAGTLTATTG 310

		              A+ +  G     A+  +S      ++D    +    +G V   +      TL     

		Sbjct: 666 TGYATLNYRGGY-GNANIGYS------HSDDIKQLYYGVSGGV---LAHANGVTLGQPLN 715

		

		Query: 311 DKAA 314

		           D   

		Sbjct: 716 DTVV 719

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score =  338 bits (868), Expect = e-114

		 Identities = 131/343 (38%), Positives = 190/343 (55%), Gaps = 38/343 (11%)

		

		Query: 166 ESNEMVGACDAMQQLFRTIRKIALTDATVFISGESGTGKELSALAIHERSARGKAPFVAI 225

		           +   +VG   AMQ+++R + ++  TD T+ I+GESGTGKEL A A+H+   R   PFVAI

		Sbjct: 135 DGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAI 194

		

		Query: 226 NCGAIPPNLLQSELFGYERGAFTGANQRKIGRVEAAAGGTLFLDEIGDMPLESQASMLRF 285

		           N  AIP +L++SELFG+E+GAFTGA  R  GR E A GGTLFLDEIGDMP+++Q  +LR 

		Sbjct: 195 NMAAIPRDLIESELFGHEKGAFTGAQTRSTGRFEQAEGGTLFLDEIGDMPMDAQTRLLRV 254

		

		Query: 286 LQEGKIERLGGREPIPVDVRIVSATHVDIEAAIREGRFREDLYHRLCVLRLDIPALRARG 345

		           LQ+G+   +GGR PI  DVRIV+AT+ D++ +I +G FREDLY+RL V+ L +P LR R 

		Sbjct: 255 LQQGEYTTVGGRTPIRSDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRA 314

		

		Query: 346 KDIEILAHRALHKFGGDSARQIRGFTSCAIEAMYRYSWPGNVRELINRIRRAIVLSDSCL 405

		           +DI  L    + +   +    ++ F   A+E M  + WPGNVREL N +RR   L    +

		Sbjct: 315 EDIPDLVRHFVQQAEKE-GLDVKRFDQEALELMKAHPWPGNVRELENLVRRLTALYPQDV 373

		

		Query: 406 ISAADLD-------------------------------LAQFVTQHA------TTLAQAR 428

		           I+   ++                               + Q+               +  

		Sbjct: 374 ITREIIENELRSEIPDSPIEKAAARSGSLSISQAVEENMRQYFASFGDALPPSGLYDRVL 433

		

		Query: 429 DIAEHRAIEASLLRHRGHLAEAATELGVSCTALSRLMAKYGLP 471

		              E+  I A+L   RG+  +AA  LG++   L + + + G+ 

		Sbjct: 434 AEMEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIRELGVS 476

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 41.6 bits (97), Expect = 3e-06

		 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 16/148 (10%)

		

		Query: 149  QQQADAARARHDARLARQKREREAAEARAAARRAASAAAA-APAPTAAASAAPAADDPEA 207

		              +  A  ++ +++   +K E++A E  A  R  A  A +   A T     A +  + + 

		Sbjct: 1036 TTETVAENSKQESK-TVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKE 1094

		

		Query: 208  KKRAIIA----------AALERARKKKEELAAQGAGPKN----TEGVSAAVQAQIDAAEA 253

		             +               A +E  + ++         PK     T    A    + D    

		Sbjct: 1095 TQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVN 1154

		

		Query: 254  RRRRLAGQRDREDDARPASDTSPTPKTE 281

		             +   +      D  +PA +TS   +  

		Sbjct: 1155 IKEPQSQTNTTADTEQPAKETSSNVEQP 1182

		

		

		>HTHTETR#TetR bacterial regulatory protein HTH signature.

		          Length = 215

		

		 Score = 73.1 bits (179), Expect = 4e-18

		 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 10/189 (5%)

		

		Query: 5   KIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKELLFTAVL 64

		           K K++ + TR+ IL  A   F+  G+    + +IA+ A      +Y++F  K  LF+ + 

		Sbjct: 4   KTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIW 63

		

		Query: 65  EYAFSALMEAERTIDLDGVAPVEAITR---LAHFVWDYYRDHPDLLRLLNNENLHEARYL 121

		           E + S + E E            ++ R   +         +   LL  +          +

		Sbjct: 64  ELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFVGEM 123

		

		Query: 122 QKSTRIREMI-SPIVKTLDGVLERGQKAGLFRTDIDPLRFYVTLSGL------GYYMVSN 174

		               + +  +       ++  L+   +A +   D+   R  + + G        +     

		Sbjct: 124 AVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLFAPQ 183

		

		Query: 175 RFTLAAIFG 183

		            F L     

		Sbjct: 184 SFDLKKEAR 192

		

		

		>PF03544#Gram-negative bacterial tonB protein

		          Length = 243

		

		 Score = 29.9 bits (67), Expect = 0.018

		 Identities = 12/62 (19%), Positives = 20/62 (32%)

		

		Query: 415 QPKKPAPQAGPTPTSPSTPRQSTSGRETASAAPAKAAALRLTSAKRPAAKTRAAKPAAAK 474

		           QPK+        P SP           + + A        + S  R  ++ +   PA A+

		Sbjct: 113 QPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQ 172

		

		Query: 475 RA 476

		             

		Sbjct: 173 AL 174

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 43.9 bits (103), Expect = 7e-06

		 Identities = 45/294 (15%), Positives = 83/294 (28%), Gaps = 21/294 (7%)

		

		Query: 718  AATPAPTATSETSDATDAKDAIGAADTKPQAVVAQHAPAIAAADRPPSTVHPASAAAVAN 777

		              TP        S  ++ +  I   D    A V   APA  +        +    +    

		Sbjct: 997  ITTPNNIQADVPSVPSNNE-EIARVDE---APVPPPAPATPSETTETVAENSKQESKTVE 1052

		

		Query: 778  DNARHPVAAPASPSAAAAAIDAAAQAP-KTNAGAIDRQSIGAVSGETAHAVAQPAVAAAS 836

		             N +   A   +      A +A +     T    + +        +T        V    

		Sbjct: 1053 KNEQD--ATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEE 1110

		

		Query: 837  HAAARVSPAIADLRHA--LAPWEDARDTAAAAATSA--PAPTESRAQPQSPQGTTQSVAA 892

		             A           +    ++P ++  +T    A  A    PT +  +PQS   TT     

		Sbjct: 1111 KAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQ 1170

		

		Query: 893  PA---PDKTEAAASNGSTVPSASASAVSPAAPATSSAAAAPVAPASSATQTSTGNAAGAA 949

		            PA       E   +  +TV + ++   +P    T+ A   P   + S+ +    +     

		Sbjct: 1171 PAKETSSNVEQPVTESTTVNTGNSVVENPE--NTTPATTQPTVNSESSNKPKNRHRRSVR 1228

		

		Query: 950  GIAGAAFGMLDAARAAAATASAAAASASATTPAVGTPGGDRAASTAAAASSAGA 1003

		             +              ++   +  A    T+        D  A     A + G 

		Sbjct: 1229 SVPHN-----VEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNVGK 1277

		

		

		

		 Score = 42.7 bits (100), Expect = 1e-05

		 Identities = 43/298 (14%), Positives = 72/298 (24%), Gaps = 23/298 (7%)

		

		Query: 430  AATPQPVARSQTAAPAAEIARKRPAAPARAPLYAWNEKPAERIAPAASVHETLRSIEASA 489

		                      Q   P+     +  A    AP+           APA     T    E S 

		Sbjct: 994  TTNITTPNNIQADVPSVPSNNEEIARVDEAPV--------PPPAPATPSETTETVAENSK 1045

		

		Query: 490  AQWTALAGATGAAAAPEAACEPALAPAARSGDAAMQAASGMHAPTTVETAAVAIPAGTAT 549

		             +   +      A    A        A  +  A  Q      + +  +         TAT

		Sbjct: 1046 QESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETAT 1105

		

		Query: 550  AVPPVDDRV-------APDIAADVTCAAEDGAAEAVEAVEAVEAVEAVEAATVPATPAVI 602

		                   +V        P + + V+   E       +A  A E  +       P +    

		Sbjct: 1106 VEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPAREN-DPTVNIKEPQSQTNT 1164

		

		Query: 603  GSSAIANARAAASAVAPASGGVGTRIAHGHETRLSVEAAPTATEDARHADASFALDAAAA 662

		             +     A+  +S V        T               P  T+   ++++S        

		Sbjct: 1165 TADTEQPAKETSSNVEQPVTESTTVNTGNSVVENPENTTPATTQPTVNSESSNK------ 1218

		

		Query: 663  GAAVGNAVPGVDVAATVDESAKQSPLPSAAPASGAAAPLAASATSSGAAATQPVAAAT 720

		                 +      V   V+ +   S   S        +    +  S   A  Q VA   

		Sbjct: 1219 -PKNRHRRSVRSVPHNVEPATTSSNDRSTVALCDLTSTNTNAVLSDARAKAQFVALNV 1275

		

		

		>TCRTETA#Tetracycline resistance protein signature.

		          Length = 399

		

		 Score = 61.0 bits (148), Expect = 3e-12

		 Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 6/148 (4%)

		

		Query: 259 VIAACIIVPQAIVAMLSPWVGRSAQRWGRRPILLLGFAALPLRALLFAGVSSPYLLVPVQ 318

		           ++ A   + Q   A   P +G  + R+GRRP+LL+  A   +   + A     ++L   +

		Sbjct: 47  ILLALYALMQFACA---PVLGALSDRFGRRPVLLVSLAGAAVDYAIMATAPFLWVLYIGR 103

		

		Query: 319 MLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGLFGLAAGVGATLSTALAGFAADHFGNA 378

		           ++ GI+ A   V    I AD+  G  R     G      G G      L G     F   

		Sbjct: 104 IVAGITGATGAVAGAYI-ADITDGDERARH-FGFMSACFGFGMVAGPVLGGLMGG-FSPH 160

		

		Query: 379 MSFFGLAAAGALATLLVWFAMPETRDAT 406

		             FF  AA   L  L   F +PE+    

		Sbjct: 161 APFFAAAALNGLNFLTGCFLLPESHKGE 188

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 30.8 bits (69), Expect = 0.007

		 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

		

		Query: 3    VEPASEPVAAPEPASAPEPVETTAPKKPHREAAPRRKPARVAPPVPR-------PAPPPA 55

		            V+P +EP    +P    +  ++        E   +   + V  PV          +    

		Sbjct: 1139 VQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSNVEQPVTESTTVNTGNSVVEN 1198

		

		Query: 56   PLVTTRAIERSQVHALLDSEVRRSGKVIGRAVDMTADAAGA 96

		            P  TT A  +  V++   ++ +   +   R+V    + A  

		Sbjct: 1199 PENTTPATTQPTVNSESSNKPKNRHRRSVRSVPHNVEPATT 1239

		

		

		>TCRTETB#Tetracycline resistance protein TetB signature.

		          Length = 458

		

		 Score = 32.9 bits (75), Expect = 1e-04

		 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

		

		Query: 16  LEPHCRGMALALNSSGIFAGISLGSALGGRVADT--WGVGLLAPTSAALTVAALIAF 70

		           +    RG A  L  S +  G  +G A+GG +A    W   LL P    +TV  L+  

		Sbjct: 132 IPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHYIHWSYLLLIPMITIITVPFLMKL 188

		

		

		>HTHFIS#FIS bacterial regulatory protein HTH signature.

		          Length = 484

		

		 Score = 89.1 bits (221), Expect = 1e-22

		 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 3/157 (1%)

		

		Query: 9   TVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLD 68

		           T+++ +D+  IR  +  AL   G  V             A    DL + D+ +PD +  D

		Sbjct: 5   TILVADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDGDLVVTDVVMPDENAFD 64

		

		Query: 69  VIRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHL--RRR 125

		           ++  ++    ++PV+V+SA+      + A + GA DYL KPF ++EL+  I   L   +R

		Sbjct: 65  LLPRIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIGIIGRALAEPKR 124

		

		Query: 126 NQGGAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPL 162

		                 +        V    A++ ++R    +  T L

		Sbjct: 125 RPSKLEDDSQDGMPLVGRSAAMQEIYRVLARLMQTDL 161

		

		

		>RTXTOXIND#Gram-negative bacterial RTX secretion protein D

		           signature.

		          Length = 478

		

		 Score = 31.7 bits (72), Expect = 0.015

		 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 23/116 (19%)

		

		Query: 404 LPPLAPLTRVPPARVLRREWGDAGRVAWLGYAVGIALFAALLIAAAGNLTLGAIVAGGFA 463

		           LP    L   P +R  R           + Y +   L  A +++  G + + A       

		Sbjct: 42  LPAHLELIETPVSRRPR----------LVAYFIMGFLVIAFILSVLGQVEIVATA----N 87

		

		Query: 464 GSLVLFALVARLALFALARV----VRDG-RVAAGLGWRYALASLDRRGAASALQIT 514

		           G L        +     + V    V++G  V  G      L  L   GA +    T

		Sbjct: 88  GKLTHSGRSKEIKPIENSIVKEIIVKEGESVRKG----DVLLKLTALGAEADTLKT 139

		

		

		>SECGEXPORT#Protein-export SecG membrane protein signature.

		          Length = 110

		

		 Score = 82.7 bits (204), Expect = 6e-24

		 Identities = 47/102 (46%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

		

		Query: 8   IIVVQLLSALGVIGLVLLQHGKGADMGAAFGSGASGSLFGATGSANFLSRTTAVLATIFF 67

		           ++VV L+ A+G++GL++LQ GKGADMGA+FG+GAS +LFG++GS NF++R TA+LAT+FF

		Sbjct: 5   LLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFF 64

		

		Query: 68  VATLALTYLGSYKSAPSVGVLGAAPAPAASAAAASQAPAASA 109

		           + +L L  + S K+           APA +      APA   

		Sbjct: 65  IISLVLGNINSNKTNKGSEWEN-LSAPAKTEQTQPAAPAKPT 105

		

		

		>OUTRMMBRANEA#Outer membrane protein A signature.

		          Length = 346

		

		 Score = 29.9 bits (67), Expect = 0.013

		 Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 10/96 (10%)

		

		Query: 138 YAVILAGWASNSKYAFLGAMR-------AAAQMVSYEISMGFALVLVLMTAGSLNLSEIV 190

		           Y     GW+      F+            A     Y+++      +     G +      

		Sbjct: 29  YTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPY---K 85

		

		Query: 191 GSQQHGFFAGHGVNFLSWNWLPLLPVFVIYFISGIA 226

		           GS ++G +   GV   +    P+     IY   G  

		Sbjct: 86  GSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGM 121

		

		

		>OMADHESIN#Yersinia outer membrane adhesin signature.

		          Length = 455

		

		 Score = 29.1 bits (64), Expect = 0.015

		 Identities = 15/45 (33%), Positives = 25/45 (55%)

		

		Query: 150 AIAVGVVAAAAAGVQIAIAEGTLVVVPSGYALNALLLALGEAWFT 194

		           +IA+G  A AA G  +A+  G++    +  A+  L  ALG++  T

		Sbjct: 72  SIAIGATAEAAKGAAVAVGAGSIATGVNSVAIGPLSKALGDSAVT 116

		

		

		>ECOLNEIPORIN#E.coli/Neisseria porin superfamily signature.

		          Length = 331

		

		 Score = 94.1 bits (234), Expect = 2e-23

		 Identities = 89/396 (22%), Positives = 140/396 (35%), Gaps = 75/396 (18%)

		

		Query: 51  MKKSLLALVALSAFAGAAHAQSSVTLYGIIDEGFNINTNAGGKHL-----YNLSSGVLQG 105

		           MKKSL+AL  L+A   AA A   VTLYG I  G   + +              +  V  G

		Sbjct: 1   MKKSLIALT-LAALPVAAMAD--VTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLG 57

		

		Query: 106 SRWGLRGTEDLGGGLKALFVLENGFDVNSGKLNQGGLEFGRQAYVGLSSSFGTVTLGRQY 165

		           S+ G +G EDLG GLKA++ +E    +       G     RQ+++GL   FG + +GR  

		Sbjct: 58  SKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGN----RQSFIGLKGGFGKLRVGRLN 113

		

		Query: 166 DSVVDF--VGPLEA-GDQWGGYIAAHPGDLDNFNNAYRVNNAVKFTSANYGGFTFGGLYS 222

		             + D   + P ++  D  G    A P   +    +      V++ S  + G +    Y+

		Sbjct: 114 SVLKDTGDINPWDSKSDYLGVNKIAEP---EARLIS------VRYDSPEFAGLSGSVQYA 164

		

		Query: 223 FGGVAGDFSRNQTWSLGAGYTNGPLVLGVGYLNARTPSTAGGLFGNNTTSSSPAAVTTPV 282

		               AG    ++++  G  Y NG   +  G    R       +                 

		Sbjct: 165 LNDNAG-RHNSESYHAGFNYKNGGFFVQYGGAYKRHHQVQENVNIEK------------- 210

		

		Query: 283 YAGYASAHTYQVIGAGGAYSFGAATVGVTYSNIKFMNFASTVFPNQTATFNNAEINFKY- 341

		                    YQ+      Y   A    V     +        + + + T   A + +++ 

		Sbjct: 211 ---------YQIHRLVSGYDNDALYASV-AVQQQDAKLVEENYSHNSQTEVAATLAYRFG 260

		

		Query: 342 QLTPTLLAGAAYDYTQGSKIAGA-SAAKYHQGSVGVDYFLSKRTDVYAIGVYQHASGNVI 400

		            +TP +    +Y +              Y Q  VG +Y  SKRT       +        

		Sbjct: 261 NVTPRV----SYAHGFKGSFDATNYNNDYDQVVVGAEYDFSKRTSALVSAGWLQ------ 310

		

		Query: 401 EADGNTVGPATAAINGLTPSSNRNQFTARVGIRHKF 436

		           E  G +   +TA                 VG+RHKF

		Sbjct: 311 EGKGESKFVSTAGG---------------VGLRHKF 331

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  125 bits (314), Expect = 1e-36

		 Identities = 77/257 (29%), Positives = 131/257 (50%), Gaps = 8/257 (3%)

		

		Query: 14  LAGKVALVTGAGRGIGAAIARAFAREGAAVAIAELDAALADETVDAIARDVADARVLAVP 73

		           + GK+A +TGA +GIG A+AR  A +GA +A  + +    ++ V ++  +   A   A P

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAE--AFP 63

		

		Query: 74  ADVAQAESVAAALACTERAFGPLDVLVNNAGVNVFGDPLALAEEDWRRCFAIDLDGVWHG 133

		           ADV  + ++    A  ER  GP+D+LVN AGV   G   +L++E+W   F+++  GV++ 

		Sbjct: 64  ADVRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNA 123

		

		Query: 134 CRAALPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHGVLGLTRALGVEYAPRNVRVN 193

		            R+    M++R  GSIV + S  A         Y  +K   +  T+ LG+E A  N+R N

		Sbjct: 124 SRSVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCN 183

		

		Query: 194 AIAPGYIETQSTHDWWNAQPDPEAARRETLALQ-----PMKRIGRADEVAMTAVFLASDE 248

		            ++PG  ET      W  + +      +          P+K++ +  ++A   +FL S +

		Sbjct: 184 IVSPGSTETDMQWSLWADE-NGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQ 242

		

		Query: 249 APFINASCITIDGGRSV 265

		           A  I    + +DGG ++

		Sbjct: 243 AGHITMHNLCVDGGATL 259

		

		

		>PF05272#Virulence-associated E family protein

		          Length = 892

		

		 Score = 29.7 bits (66), Expect = 0.037

		 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

		

		Query: 18  RALD-GISFDVQAGQVHGLMGENGAGKSTLLKILGGEY 54

		           R ++ G  FD        L G  G GKSTL+  L G  

		Sbjct: 587 RVMEPGCKFDY----SVVLEGTGGIGKSTLINTLVGLD 620

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score =  127 bits (319), Expect = 2e-37

		 Identities = 78/251 (31%), Positives = 112/251 (44%), Gaps = 8/251 (3%)

		

		Query: 27  LAGRAVLITGGATGIGASFVEHFARQGARVAFVDLDEQAARALAARLADAAHEPVFVACD 86

		           + G+   ITG A GIG +     A QGA +A VD + +    + + L   A        D

		Sbjct: 6   IEGKIAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPAD 65

		

		Query: 87  LTDIAALRGAIEAIRARIGPIAALVNNAANDVRHAIADVTPDSFDACIAVNLRHQFFAAQ 146

		           + D AA+      I   +GPI  LVN A       I  ++ + ++A  +VN    F A++

		Sbjct: 66  VRDSAAIDEITARIEREMGPIDILVNVAGVLRPGLIHSLSDEEWEATFSVNSTGVFNASR 125

		

		Query: 147 AVIDDMKRLGGGSIVNLGSISWMLKNAGYPVYASAKAAVQGLTRALARELGPFGIRVNTL 206

		           +V   M     GSIV +GS    +       YAS+KAA    T+ L  EL  + IR N +

		Sbjct: 126 SVSKYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIV 185

		

		Query: 207 VPGWVMTDKQRRLWLDDAGRAAIKAGQCIDAEL--------LPGDLARMALFLAADDSRM 258

		            PG   TD Q  LW D+ G   +  G     +          P D+A   LFL +  +  

		Sbjct: 186 SPGSTETDMQWSLWADENGAEQVIKGSLETFKTGIPLKKLAKPSDIADAVLFLVSGQAGH 245

		

		Query: 259 ITAQDVVVDGG 269

		           IT  ++ VDGG

		Sbjct: 246 ITMHNLCVDGG 256

		

		

		>ALARACEMASE#Alanine racemase signature.

		          Length = 356

		

		 Score = 31.3 bits (71), Expect = 0.002

		 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

		

		Query: 99  VHTIDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPSDAAELARAIAALPALR 158

		           VH+  +LK  Q    + P         + + ++   ++ G  P     + + + A+  + 

		Sbjct: 100 VHSNWQLKALQNARLKAPLD-------IYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVG 152

		

		Query: 159 LRGLMAIPEPAADPE 173

		              LM+    A  P+

		Sbjct: 153 EMTLMSHFAEAEHPD 167

		

		

		>PYOCINKILLER#Pyocin S killer protein signature.

		          Length = 617

		

		 Score = 30.5 bits (68), Expect = 0.021

		 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 23/132 (17%)

		

		Query: 262 DALASLEPAEIQLQEASYSLSHYAQRLDLDPDRLAQVETRLDALHSTARKFRLPPETLHG 321

		           +A       E++   A+Y++        L  + ++ ++ R++ L +              

		Sbjct: 171 EAYMRFLDREMEGLTAAYNV-------KLFTEAISSLQIRMNTLTAAKASIEAAAANK-- 221

		

		Query: 322 EHEARRAQLAELDAAADLSALQAIADRAKDAYL----------ADAKKLSKARAQAAKAL 371

		              AR    AE    A+  A Q  A RA + Y           A  + L +  AQ A +L

		Sbjct: 222 ---AREQAAAEAKRKAEEQARQQAAIRAANTYAMPANGSVVATAAGRGLIQV-AQGAASL 277

		

		Query: 372 GAAVTTGMQELS 383

		             A++  +  L 

		Sbjct: 278 AQAISDAIAVLG 289

		

		

		>SECA#SecA protein signature.

		          Length = 901

		

		 Score = 28.7 bits (64), Expect = 0.014

		 Identities = 17/49 (34%), Positives = 23/49 (46%)

		

		Query: 93  IKSEEALADDAIAYVGDDVNDLPVIDLVGVSYAPADAHALVKRRVDYVV 141

		           +  EE L  + I   G+ +     I L+    A   AHAL  R VDY+V

		Sbjct: 280 VLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIV 328

		

		

		>OMPADOMAIN#OMPA domain signature.

		          Length = 346

		

		 Score = 98.9 bits (246), Expect = 2e-27

		 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

		

		Query: 33  QGGAVSTQPNPENVAQVTVDPLNDPNSPLAKRSVYFDFDSYSVQDQYQPLLQQHAQYLKS 92

		           QG A          A           S      V F+F+  +++ + Q  L Q    L +

		Sbjct: 193 QGEAAPVVAPAPAPAPEVQTKHFTLKS-----DVLFNFNKATLKPEGQAALDQLYSQLSN 247

		

		Query: 93  HPQRH--ILIQGNTDERGTSEYNLALGQKRAEAVRRALSLLGVGDSQMEAVSLGKEKPVA 150

		              +   +++ G TD  G+  YN  L ++RA++V   L   G+   ++ A  +G+  PV 

		Sbjct: 248 LDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVT 307

		

		Query: 151 LGHDEASWAQNRRADLV 167

		                      +RA L+

		Sbjct: 308 ---GNTCDNVKQRAALI 321

		

		

		>IGASERPTASE#IgA-specific serine endopeptidase (S6) signature.

		          Length = 1541

		

		 Score = 58.2 bits (140), Expect = 2e-11

		 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 10/149 (6%)

		

		Query: 77   VAPPPPPVKNEEADIALQQKRREQQAAAEREAQLEEQRRQQQLKAQQ-----LAAQQAAQ 131

		            V PP P   +E  +   +  ++E +   + E    E   Q +  A++      A  Q  +

		Sbjct: 1025 VPPPAPATPSETTETVAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNE 1084

		

		Query: 132  LAAQKAVEREKQKQAEKLKQQQQLAEQQRKLEQQKLEQQKLE-----QQKKQEQLAAQKK 186

		            +A   +  +E Q    K     +  E+ +   ++  E  K+      +Q++ E +  Q +

		Sbjct: 1085 VAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAE 1144

		

		Query: 187  ADAEKAAKAAAAKANAAAKAKLDKERQAR 215

		               E        +  +      D E+ A+

		Sbjct: 1145 PARENDPTVNIKEPQSQTNTTADTEQPAK 1173

		

		

		

		 Score = 36.2 bits (83), Expect = 2e-04

		 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 16/148 (10%)

		

		Query: 86   NEEADIALQQKRREQQAAAEREAQLEEQRRQQQLKAQQLAAQQAAQLAAQKAVEREKQKQ 145

		            N E +   Q                 +         +     +A       A   E  + 

		Sbjct: 982  NPEVEKRNQTVDTTNITTPNNIQA--DVPSVPSNNEEIARVDEAPVPPPAPATPSETTET 1039

		

		Query: 146  -AEKLKQQQQLAEQQRKLEQQKLEQQKLE------------QQKKQEQLAAQKKADAEKA 192

		             AE  KQ+ +  E+  +   +   Q +              Q  +  Q  ++ K      

		Sbjct: 1040 VAENSKQESKTVEKNEQDATETTAQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTE 1099

		

		Query: 193  AKAAAAKANAAAKAKLDKERQARLAQLQ 220

		             K  A       KAK++ E+   + ++ 

		Sbjct: 1100 TKETATVE-KEEKAKVETEKTQEVPKVT 1126

		

		

		

		 Score = 30.8 bits (69), Expect = 0.010

		 Identities = 13/109 (11%), Positives = 39/109 (35%)

		

		Query: 87   EEADIALQQKRREQQAAAEREAQLEEQRRQQQLKAQQLAAQQAAQLAAQKAVEREKQKQA 146

		            +EA   ++   +  + A       E Q  + +  A     ++A     +     +   Q 

		Sbjct: 1070 KEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKEEKAKVETEKTQEVPKVTSQV 1129

		

		Query: 147  EKLKQQQQLAEQQRKLEQQKLEQQKLEQQKKQEQLAAQKKADAEKAAKA 195

		               ++Q +  + Q +  ++      +++ + Q    A  +  A++ +  

		Sbjct: 1130 SPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTEQPAKETSSN 1178

		

		

		>DHBDHDRGNASE#2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

		           signature.

		          Length = 261

		

		 Score = 88.2 bits (218), Expect = 5e-23

		 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 4/180 (2%)

		

		Query: 2   IVFVTGASAGFGAAIARAFVKGGHRVVASARRKERLDALAAELGGALLPIE---LDVRDR 58

		           I F+TGA+ G G A+AR     G  + A     E+L+ + + L       E    DVRD 

		Sbjct: 10  IAFITGAAQGIGEAVARTLASQGAHIAAVDYNPEKLEKVVSSLKAEARHAEAFPADVRDS 69

		

		Query: 59  AAVEAVPAALPAEFAAIDVLVNNAGLALGVEPAHRASLDEWQTMIDTNCSGLVTVTRTLL 118

		           AA++ + A +  E   ID+LVN AG+ L     H  S +EW+     N +G+   +R++ 

		Sbjct: 70  AAIDEITARIEREMGPIDILVNVAGV-LRPGLIHSLSDEEWEATFSVNSTGVFNASRSVS 128

		

		Query: 119 PGMVERGRGHIFNLGSVAGSYPYPGGNVYGATKAFVRQFSLNLRADLIGTPLRVTDIEPG 178

		             M++R  G I  +GS     P      Y ++KA    F+  L  +L    +R   + PG

		Sbjct: 129 KYMMDRRSGSIVTVGSNPAGVPRTSMAAYASSKAAAVMFTKCLGLELAEYNIRCNIVSPG 188

		

		

		>BCTERIALGSPH#Bacterial general secretion pathway protein H

		          signature.

		          Length = 170

		

		 Score = 38.4 bits (89), Expect = 5e-06

		 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

		

		Query: 12 GFMLVELMVALVIVALVAVLSVPTFAGARMRDRVDARARVFGASLAYARGEAV 64

		          GF L+E+M+ L+++ + A + +  F  +R        AR F A L + +   +

		Sbjct: 5  GFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLAR-FEAQLRFVQQRGL 56

		

		

		>BCTERIALGSPG#Bacterial general secretion pathway protein G

		          signature.

		          Length = 145

		

		 Score = 47.6 bits (113), Expect = 1e-09

		 Identities = 16/59 (27%), Positives = 35/59 (59%)

		

		Query: 4  IERSSRLRGFTLIEVVVALAIVAVLAAFAVPSYRSHVERGNRLTAIAALYRAAQYVDAF 62

		          +  + + RGFTL+E++V + I+ VLA+  VP+   + E+ ++  A++ +      +D +

		Sbjct: 1  MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAVSDIVALENALDMY 59