'STRAP:multiple sequence alignments '

charite.christo
Class ChSet<E>

java.lang.Object
  extended by charite.christo.ChSet<E>
All Implemented Interfaces:
HasModiCount, java.lang.Iterable<E>, java.util.Collection<E>, java.util.Set<E>

public class ChSet<E>
extends java.lang.Object
implements java.util.Set<E>, HasModiCount


Field Summary
static long IDENTITY
           
static long WEAK_REFERENCE
           
 
Constructor Summary
ChSet(long options, java.lang.Class clazz)
           
 
Method Summary
 boolean add(E o)
           
 boolean addAll(java.util.Collection<? extends E> c)
           
 E[] asArray()
           
 E[] asArray(ChRunnable run, java.lang.String runID)
           
 void clear()
           
 boolean contains(java.lang.Object o)
           
 boolean containsAll(java.util.Collection<?> c)
           
 boolean isEmpty()
           
 java.util.Iterator iterator()
           
 int modificationCount()
           
 boolean remove(java.lang.Object o)
           
 boolean removeAll(java.util.Collection<?> c)
           
 boolean retainAll(java.util.Collection<?> c)
           
 int size()
           
 java.lang.Object[] toArray()
           
<T> T[]
toArray(T[] a)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface java.util.Set
equals, hashCode
 

Field Detail

WEAK_REFERENCE

public static final long WEAK_REFERENCE
See Also:
Constant Field Values

IDENTITY

public static final long IDENTITY
See Also:
Constant Field Values
Constructor Detail

ChSet

public ChSet(long options,
             java.lang.Class clazz)
Method Detail

modificationCount

public int modificationCount()
Specified by:
modificationCount in interface HasModiCount

iterator

public java.util.Iterator iterator()
Specified by:
iterator in interface java.lang.Iterable<E>
Specified by:
iterator in interface java.util.Collection<E>
Specified by:
iterator in interface java.util.Set<E>

size

public int size()
Specified by:
size in interface java.util.Collection<E>
Specified by:
size in interface java.util.Set<E>

isEmpty

public boolean isEmpty()
Specified by:
isEmpty in interface java.util.Collection<E>
Specified by:
isEmpty in interface java.util.Set<E>

contains

public boolean contains(java.lang.Object o)
Specified by:
contains in interface java.util.Collection<E>
Specified by:
contains in interface java.util.Set<E>

add

public boolean add(E o)
Specified by:
add in interface java.util.Collection<E>
Specified by:
add in interface java.util.Set<E>

remove

public boolean remove(java.lang.Object o)
Specified by:
remove in interface java.util.Collection<E>
Specified by:
remove in interface java.util.Set<E>

clear

public void clear()
Specified by:
clear in interface java.util.Collection<E>
Specified by:
clear in interface java.util.Set<E>

removeAll

public boolean removeAll(java.util.Collection<?> c)
Specified by:
removeAll in interface java.util.Collection<E>
Specified by:
removeAll in interface java.util.Set<E>

retainAll

public boolean retainAll(java.util.Collection<?> c)
Specified by:
retainAll in interface java.util.Collection<E>
Specified by:
retainAll in interface java.util.Set<E>

addAll

public boolean addAll(java.util.Collection<? extends E> c)
Specified by:
addAll in interface java.util.Collection<E>
Specified by:
addAll in interface java.util.Set<E>

containsAll

public boolean containsAll(java.util.Collection<?> c)
Specified by:
containsAll in interface java.util.Collection<E>
Specified by:
containsAll in interface java.util.Set<E>

toArray

public java.lang.Object[] toArray()
Specified by:
toArray in interface java.util.Collection<E>
Specified by:
toArray in interface java.util.Set<E>

toArray

public <T> T[] toArray(T[] a)
Specified by:
toArray in interface java.util.Collection<E>
Specified by:
toArray in interface java.util.Set<E>

asArray

public E[] asArray()

asArray

public E[] asArray(ChRunnable run,
                   java.lang.String runID)

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'