'STRAP:multiple sequence alignments '

charite.christo
Class ChZip

java.lang.Object
  extended by charite.christo.ChZip

public class ChZip
extends java.lang.Object

to extract jar packages


Field Summary
static long PACK_IF_NEWER
           
 
Method Summary
static boolean checkIntegrityOfZipFile(java.io.File f, java.util.List<java.lang.String> listOfEntries)
           
static boolean extractAll(java.io.File jf, java.io.File destDirectory)
           
static boolean extractAll(java.util.zip.ZipFile jf, java.io.File destDirectory)
           
static java.lang.String[] extractAllFilesWithEnding(java.util.zip.ZipFile zf, java.lang.String sRoot, java.lang.String[] fileExtension, java.io.File dirDest)
           
static ChZip getInstance(java.io.File parent)
           
static java.io.InputStream inputStream(java.lang.String entry, java.util.zip.ZipFile zf)
           
 int jarFiles_modificationCount()
           
 java.io.File[] jarFiles()
           
 java.util.zip.ZipFile[] jarFilesJF()
           
 java.lang.String[] joinFiles(java.lang.String fn, java.util.Map<java.lang.String,java.util.zip.ZipFile> map)
           
static void main(java.lang.String[] argv)
           
static void makeZipFile(java.io.File jarFile, java.io.File jarDir, java.io.File[] files, java.io.FileFilter filter)
           
 java.net.URL resource(java.lang.String s)
           
 java.io.InputStream resourceAsStream(java.lang.String s)
           
static boolean supportForPack200()
           
static java.io.File unpack200(java.io.File fPack, long options)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

PACK_IF_NEWER

public static final long PACK_IF_NEWER
See Also:
Constant Field Values
Method Detail

jarFiles_modificationCount

public int jarFiles_modificationCount()

jarFiles

public java.io.File[] jarFiles()

jarFilesJF

public java.util.zip.ZipFile[] jarFilesJF()

joinFiles

public java.lang.String[] joinFiles(java.lang.String fn,
                                    java.util.Map<java.lang.String,java.util.zip.ZipFile> map)

resource

public java.net.URL resource(java.lang.String s)

resourceAsStream

public java.io.InputStream resourceAsStream(java.lang.String s)

getInstance

public static ChZip getInstance(java.io.File parent)

supportForPack200

public static boolean supportForPack200()

unpack200

public static java.io.File unpack200(java.io.File fPack,
                                     long options)

extractAll

public static boolean extractAll(java.io.File jf,
                                 java.io.File destDirectory)

extractAll

public static boolean extractAll(java.util.zip.ZipFile jf,
                                 java.io.File destDirectory)

extractAllFilesWithEnding

public static java.lang.String[] extractAllFilesWithEnding(java.util.zip.ZipFile zf,
                                                           java.lang.String sRoot,
                                                           java.lang.String[] fileExtension,
                                                           java.io.File dirDest)

checkIntegrityOfZipFile

public static boolean checkIntegrityOfZipFile(java.io.File f,
                                              java.util.List<java.lang.String> listOfEntries)

inputStream

public static java.io.InputStream inputStream(java.lang.String entry,
                                              java.util.zip.ZipFile zf)

makeZipFile

public static void makeZipFile(java.io.File jarFile,
                               java.io.File jarDir,
                               java.io.File[] files,
                               java.io.FileFilter filter)

main

public static void main(java.lang.String[] argv)

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'