'STRAP:multiple sequence alignments '

charite.christo
Class FileEditorEclipse

java.lang.Object
  extended by charite.christo.FileEditorEclipse
All Implemented Interfaces:
ChRunnable, FileEditor

public class FileEditorEclipse
extends java.lang.Object
implements ChRunnable, FileEditor

Opens a file in Eclipse. Interprocess communication via port. Using the Eclipse plugin written by Luca Barbieri.


Field Summary
 
Fields inherited from interface charite.christo.ChRunnable
APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT
 
Constructor Summary
FileEditorEclipse()
           
 
Method Summary
 boolean editFile(java.io.File file, int lineNumber)
           
static void execute(java.lang.String cmd, java.lang.Object[][] args, java.io.OutputStream stream)
           
static void main(java.lang.String[] argv)
           
 java.lang.Object run(java.lang.String id, java.lang.Object arg)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

FileEditorEclipse

public FileEditorEclipse()
Method Detail

main

public static void main(java.lang.String[] argv)

editFile

public boolean editFile(java.io.File file,
                        int lineNumber)
Specified by:
editFile in interface FileEditor

run

public java.lang.Object run(java.lang.String id,
                            java.lang.Object arg)
Specified by:
run in interface ChRunnable

execute

public static void execute(java.lang.String cmd,
                           java.lang.Object[][] args,
                           java.io.OutputStream stream)
                    throws java.io.IOException
Throws:
java.io.IOException

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'