charite.christo
Class Microsoft

java.lang.Object
  charite.christo.Microsoft

All Implemented Interfaces:

ChRunnable, java.awt.event.ActionListener, java.util.EventListener

public class Microsoft
extends java.lang.Object
implements java.awt.event.ActionListener, ChRunnable

HELP
Windows differs to standard OS with respect to

• File separator character "\" instead of "/".
• Path separator character ";" instead of ":".
• File system:
  • File and folder names: No case insensitivity. Some reserved words must not contain in file names.
  • File system: Until Windows Vista, the directory tree depends on the language of the Windows installation.
  • File path must not exceed 260 characters.
  • Unusual characters in file and directory names like space and Umlaute
  • Files are blocked when already open in an application.

Tips for STRAP users

• Do not use WIKI:Notepad, take WIKI:Wordpad or WIKI:Notepad_plus_plus instead because Notepad might ignore WIKI:Carriage_return characters.
• Certain file-names are reserved by the system and must be avoided. For example you cannot save your protein file as "con.pdb", but you can use "conserved.pdb".

Cygwin: To install Bioinformatics programs, STRAP uses the WIKI:Compiler of WIKI:Cygwin if no other specified.

The directory for program settings: Normally, WIKI:Dot_files are used for files that store settings, here ~/.StrapAlign/. To avoid problems in Windows, the dot is omitted. Consequently the settings directory is "%HOMEPATH%\StrapAlign\". If %HOMEPATH% contains white space then "C:\StrapAlign\" is used instead. This is the case in Windows XP but not in Windows 7. An alternative directory can be provided in the file %HOMEPATH%\StrapAlign\location_of_StrapAlign.ini.

Field Summary

static java.lang.String	CYGWIN_CORE
static java.lang.String	CYGWIN_LATEX

Fields inherited from interface charite.christo.ChRunnable

APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT

Method Summary

void	actionPerformed(java.awt.event.ActionEvent ev)
static java.lang.String	cmd()
static ChButton	newCygwinButton(java.lang.String packages)
java.lang.Object	run(java.lang.String id, java.lang.Object arg)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CYGWIN_CORE

public static final java.lang.String CYGWIN_CORE

See Also:

Constant Field Values

CYGWIN_LATEX

public static final java.lang.String CYGWIN_LATEX

See Also:

Constant Field Values

Method Detail

cmd

public static java.lang.String cmd()

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent ev)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

newCygwinButton

public static ChButton newCygwinButton(java.lang.String packages)

run

public java.lang.Object run(java.lang.String id,
                            java.lang.Object arg)

Specified by:

run in interface ChRunnable