charite.christo
Class NCBI_separateEntries

java.lang.Object
  charite.christo.AbstractInteractiveFileProcessor
      charite.christo.NCBI_separateEntries

All Implemented Interfaces:

java.awt.event.ActionListener, java.util.EventListener

public class NCBI_separateEntries
extends AbstractInteractiveFileProcessor

HELP This utility allows to split a multiple sequences file where the sections are separated by a line containing only two slashes. The ncbi server is producing this kind of concatenated file when requesting the result with parameters Display=GenPept.and send-to=text. SEE_DIALOG:charite/christo/strap/DialogFetchSRS

Constructor Summary

NCBI_separateEntries()

Method Summary

java.lang.String	fileEntry(BA byteArray, java.io.File f)
java.io.File[]	processFile(BA byteArray, java.io.File f, boolean overwrite)

Methods inherited from class charite.christo.AbstractInteractiveFileProcessor

actionPerformed, getCreatedFiles, interactiveProcess, setErrorNonSelected, setTextNorth

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NCBI_separateEntries

public NCBI_separateEntries()

Method Detail

fileEntry

public java.lang.String fileEntry(BA byteArray,
                                  java.io.File f)

Specified by:

fileEntry in class AbstractInteractiveFileProcessor

processFile

public java.io.File[] processFile(BA byteArray,
                                  java.io.File f,
                                  boolean overwrite)

Specified by:

processFile in class AbstractInteractiveFileProcessor