'STRAP:multiple sequence alignments '

charite.christo
Class PrgParas

java.lang.Object
  extended by charite.christo.PrgParas

public class PrgParas
extends java.lang.Object


Field Summary
 java.lang.String _guiDescription
           
 
Constructor Summary
PrgParas()
           
 
Method Summary
 void addCommandLineOption(java.lang.String para, boolean atEnd)
           
 PrgParas addVariable(java.lang.String name, java.lang.String value)
           
 PrgParas addVariableE(java.lang.String name, java.lang.String value)
           
 java.lang.String[] asStringArray()
           
 void defineGUI(long options, java.lang.String name_descript_initVal)
           
 PrgParasGUI getGUI(boolean createOne)
           
 java.util.Map<java.lang.String,java.lang.String> getMapVariables()
           
 boolean hasGUI()
           
 void setGUI(PrgParasGUI gui)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

_guiDescription

public java.lang.String _guiDescription
Constructor Detail

PrgParas

public PrgParas()
Method Detail

setGUI

public void setGUI(PrgParasGUI gui)

getGUI

public PrgParasGUI getGUI(boolean createOne)

defineGUI

public void defineGUI(long options,
                      java.lang.String name_descript_initVal)

hasGUI

public boolean hasGUI()

getMapVariables

public java.util.Map<java.lang.String,java.lang.String> getMapVariables()

addVariable

public PrgParas addVariable(java.lang.String name,
                            java.lang.String value)

addVariableE

public PrgParas addVariableE(java.lang.String name,
                             java.lang.String value)

addCommandLineOption

public void addCommandLineOption(java.lang.String para,
                                 boolean atEnd)

asStringArray

public java.lang.String[] asStringArray()

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'