'STRAP:multiple sequence alignments '

charite.christo.metannogen
Class Columns

java.lang.Object
  extended by charite.christo.metannogen.Columns

public final class Columns
extends Object


Field Summary
static String ACCEPTED
           
static String COMMENT
           
static String COMPARTMENT
           
static String CONFIDENCE
           
static String DATASET_ID
           
static String[] DEFAULT_COLUMNS
           
static String DELTA_G
           
static String EC
           
static String EQUATION
           
static String EXCLUDED
           
static int I_ACCEPTED
           
static int I_COMMENT
           
static int I_COMPARTMENT
           
static int I_CONFIDENCE
           
static int I_DATASET_ID
           
static int I_EC
           
static int I_EQUATION
           
static int I_EXCLUDED
           
static int I_PATHWAY
           
static int I_SCIENTIST
           
static String PATHWAY
           
static String SCIENTIST
           
static String SERVER_TIME_SEC
           
 
Method Summary
static int countColumns()
           
static String[] getNames()
           
static int maxNameLength()
           
static void setAdditionalColumns(String[] cols)
           
static int toIndex(String s)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

SCIENTIST

public static final String SCIENTIST
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Constant Field Values

DATASET_ID

public static final String DATASET_ID
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Constant Field Values

EC

public static final String EC
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Constant Field Values

EQUATION

public static final String EQUATION
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Constant Field Values

COMMENT

public static final String COMMENT
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Constant Field Values

CONFIDENCE

public static final String CONFIDENCE
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Constant Field Values

COMPARTMENT

public static final String COMPARTMENT
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Constant Field Values

DELTA_G

public static final String DELTA_G
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Constant Field Values

ACCEPTED

public static final String ACCEPTED
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Constant Field Values

EXCLUDED

public static final String EXCLUDED
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Constant Field Values

SERVER_TIME_SEC

public static final String SERVER_TIME_SEC
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Constant Field Values

PATHWAY

public static final String PATHWAY
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Constant Field Values

DEFAULT_COLUMNS

public static final String[] DEFAULT_COLUMNS

I_SCIENTIST

public static final int I_SCIENTIST
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Constant Field Values

I_DATASET_ID

public static final int I_DATASET_ID
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Constant Field Values

I_EC

public static final int I_EC
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Constant Field Values

I_EQUATION

public static final int I_EQUATION
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Constant Field Values

I_COMMENT

public static final int I_COMMENT
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Constant Field Values

I_CONFIDENCE

public static final int I_CONFIDENCE
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Constant Field Values

I_COMPARTMENT

public static final int I_COMPARTMENT
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Constant Field Values

I_ACCEPTED

public static final int I_ACCEPTED
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Constant Field Values

I_EXCLUDED

public static final int I_EXCLUDED
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Constant Field Values

I_PATHWAY

public static final int I_PATHWAY
See Also:
Constant Field Values
Method Detail

setAdditionalColumns

public static void setAdditionalColumns(String[] cols)

toIndex

public static int toIndex(String s)

getNames

public static String[] getNames()

countColumns

public static int countColumns()

maxNameLength

public static int maxNameLength()

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, StrapProtein and StrapEvent.'