charite.christo.metannogen
Class MSpecies

java.lang.Object
  charite.christo.metannogen.MObject
      charite.christo.metannogen.MSpecies

All Implemented Interfaces:

DialogStringMatch.Interface, ChCustomDictionaryProvider, HasChildren, HasID, HasName, HasRendererText, HasInfoText, Species, TabItemTipIcon.Interface, Cloneable, Comparable

public class MSpecies
extends MObject
implements Species, TabItemTipIcon.Interface, HasRendererText, HasChildren, HasInfoText, Comparable, DialogStringMatch.Interface, ChCustomDictionaryProvider

Field Summary

static MSpecies[]

NONE

Fields inherited from interface charite.christo.interfaces.HasRendererText

JLIST

Constructor Summary

MSpecies()

Method Summary

int	compareTo(Object o)
boolean	equals(Object o)
String[]	getAllNames()
String[]	getAllNamesLC()
Object[]	getChildren()
MReactionCollection	getCollection() Returns the reference of the containing network object.
String[]	getCustomDictionaryWords() For JOrtho
CharSequence	getFormula()
Object	getHaystacksForStringSearch(int mode)
String	getInfoText()
String	getName() The human readable name of the metabolite.
String[]	getReactionIDs()
MReaction[]	getReactions() Get a list of Reactions with this metabolite.
CharSequence	getRendererText(int options)
TabItemTipIcon	getTabItemTipIcon(MouseEvent ev)
ImageIcon	gif()
boolean	hasChildren()
int	hashCode(Object o)
boolean	isGeneral() General metabolites are for example "Sugar" or "Amino acid".
void	setCollection(MReactionCollection c)
void	setComment(CharSequence s)
void	setFormula(CharSequence s)
void	setNames(CharSequence s)
void	setReactionIDs(CharSequence s)
void	setRemark(CharSequence s)

Methods inherited from class charite.christo.metannogen.MObject

clone, getAttribute, getAttributeF, getAttributeI, getAttributes, getClientProperty, getClientPropertyMapAsString, getEntireText, getID, getIDMapped, getIDMappedSimilar, getParent, getTopAncestor, getTopAncestorID, main, putClientProperty, setAttributes, setCollection, setID, setName, setParent, setTextBlock, toString

Methods inherited from class java.lang.Object

getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface charite.christo.metannogen.Species

getAttribute, getAttributeF, getAttributeI, getID

Field Detail

NONE

public static final MSpecies[] NONE

Constructor Detail

MSpecies

public MSpecies()

Method Detail

compareTo

public int compareTo(Object o)

Specified by:

compareTo in interface Comparable

equals

public final boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public final int hashCode(Object o)

setRemark

public void setRemark(CharSequence s)

setComment

public void setComment(CharSequence s)

setFormula

public void setFormula(CharSequence s)

setReactionIDs

public void setReactionIDs(CharSequence s)

setNames

public void setNames(CharSequence s)

isGeneral

public boolean isGeneral()

Description copied from interface: Species

General metabolites are for example "Sugar" or "Amino acid".

Specified by:

isGeneral in interface Species

getFormula

public CharSequence getFormula()

getAllNamesLC

public final String[] getAllNamesLC()

getAllNames

public final String[] getAllNames()

getName

public final String getName()

Description copied from interface: Species

The human readable name of the metabolite.

Specified by:

getName in interface HasName

Specified by:

getName in interface Species

Overrides:

getName in class MObject

hasChildren

public boolean hasChildren()

Specified by:

hasChildren in interface HasChildren

getChildren

public Object[] getChildren()

Specified by:

getChildren in interface HasChildren

getReactions

public MReaction[] getReactions()

Description copied from interface: Species

Get a list of Reactions with this metabolite.

Specified by:

getReactions in interface Species

getReactionIDs

public String[] getReactionIDs()

setCollection

public void setCollection(MReactionCollection c)

getCollection

public MReactionCollection getCollection()

Description copied from interface: Species

Returns the reference of the containing network object.

Specified by:

getCollection in interface Species

Overrides:

getCollection in class MObject

getInfoText

public String getInfoText()

Specified by:

getInfoText in interface HasInfoText

getTabItemTipIcon

public TabItemTipIcon getTabItemTipIcon(MouseEvent ev)

Specified by:

getTabItemTipIcon in interface TabItemTipIcon.Interface

getRendererText

public CharSequence getRendererText(int options)

Specified by:

getRendererText in interface HasRendererText

gif

public ImageIcon gif()

getCustomDictionaryWords

public String[] getCustomDictionaryWords()

Description copied from interface: ChCustomDictionaryProvider

For JOrtho

Specified by:

getCustomDictionaryWords in interface ChCustomDictionaryProvider

getHaystacksForStringSearch

public Object getHaystacksForStringSearch(int mode)

Specified by:

getHaystacksForStringSearch in interface DialogStringMatch.Interface

Overrides:

getHaystacksForStringSearch in class MObject